Query 006683
Match_columns 635
No_of_seqs 358 out of 3958
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 06:10:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006683.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006683hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 3.4E-69 1.2E-73 617.8 44.5 538 34-635 2-585 (823)
2 4f11_A Gamma-aminobutyric acid 100.0 3.2E-48 1.1E-52 410.6 35.0 370 32-445 12-425 (433)
3 3o21_A Glutamate receptor 3; p 100.0 3.4E-47 1.1E-51 395.8 38.4 353 32-410 3-380 (389)
4 3hsy_A Glutamate receptor 2; l 100.0 5.4E-46 1.8E-50 385.4 32.6 351 34-409 2-373 (376)
5 1jdp_A NPR-C, atrial natriuret 100.0 3.5E-45 1.2E-49 388.2 39.4 357 32-406 7-397 (441)
6 3sm9_A Mglur3, metabotropic gl 100.0 2E-45 6.9E-50 391.6 34.4 355 32-402 11-462 (479)
7 1dp4_A Atrial natriuretic pept 100.0 1.3E-45 4.4E-50 391.1 32.6 376 33-445 1-419 (435)
8 3saj_A Glutamate receptor 1; r 100.0 3.3E-45 1.1E-49 380.8 34.5 348 31-408 7-375 (384)
9 3om0_A Glutamate receptor, ion 100.0 2.2E-45 7.6E-50 383.5 33.0 357 33-410 3-381 (393)
10 2e4u_A Metabotropic glutamate 100.0 2.4E-44 8.1E-49 391.6 39.5 376 32-446 12-484 (555)
11 3h6g_A Glutamate receptor, ion 100.0 1.4E-44 4.7E-49 378.0 35.4 357 32-409 2-382 (395)
12 3ks9_A Mglur1, metabotropic gl 100.0 1.9E-44 6.6E-49 385.7 35.1 380 31-445 14-496 (496)
13 4gpa_A Glutamate receptor 4; P 100.0 1.3E-43 4.6E-48 370.0 39.1 350 32-409 3-377 (389)
14 3mq4_A Mglur7, metabotropic gl 100.0 3.3E-45 1.1E-49 391.0 24.0 359 32-402 14-467 (481)
15 3qek_A NMDA glutamate receptor 100.0 5.2E-44 1.8E-48 372.0 32.1 320 32-403 3-369 (384)
16 3i45_A Twin-arginine transloca 100.0 2.5E-39 8.6E-44 337.2 31.7 348 32-406 3-362 (387)
17 4f06_A Extracellular ligand-bi 100.0 7.2E-39 2.4E-43 331.4 31.7 344 32-396 3-353 (371)
18 3td9_A Branched chain amino ac 100.0 2.2E-38 7.4E-43 327.6 33.2 342 32-404 14-363 (366)
19 3h5l_A Putative branched-chain 100.0 7.2E-39 2.5E-43 337.3 30.0 338 32-395 12-388 (419)
20 3i09_A Periplasmic branched-ch 100.0 3.8E-38 1.3E-42 326.9 33.2 336 32-394 2-342 (375)
21 3n0w_A ABC branched chain amin 100.0 1.6E-38 5.5E-43 330.1 29.8 336 32-394 4-346 (379)
22 3ipc_A ABC transporter, substr 100.0 4E-38 1.4E-42 324.3 30.4 343 33-404 1-352 (356)
23 4gnr_A ABC transporter substra 100.0 1.3E-37 4.6E-42 319.9 33.7 338 32-402 5-352 (353)
24 3hut_A Putative branched-chain 100.0 2.6E-37 9E-42 318.5 32.5 345 32-404 2-354 (358)
25 4evq_A Putative ABC transporte 100.0 3.1E-37 1.1E-41 320.0 32.2 345 32-403 14-363 (375)
26 3qel_B Glutamate [NMDA] recept 100.0 7.5E-38 2.6E-42 321.0 26.5 321 32-403 2-351 (364)
27 1usg_A Leucine-specific bindin 100.0 3.7E-37 1.3E-41 315.8 31.6 338 33-398 1-345 (346)
28 4eyg_A Twin-arginine transloca 100.0 4.8E-37 1.6E-41 317.8 32.7 345 32-403 4-359 (368)
29 3lkb_A Probable branched-chain 100.0 4.8E-37 1.6E-41 320.6 28.8 350 32-408 5-379 (392)
30 3n0x_A Possible substrate bind 100.0 1.5E-36 5.2E-41 314.4 29.7 331 32-392 2-346 (374)
31 3eaf_A ABC transporter, substr 100.0 5.1E-36 1.7E-40 312.6 31.5 341 33-404 3-372 (391)
32 3lop_A Substrate binding perip 100.0 4.3E-36 1.5E-40 310.1 30.6 339 32-396 3-354 (364)
33 3sg0_A Extracellular ligand-bi 100.0 1.1E-35 3.7E-40 309.7 22.5 339 32-398 25-385 (386)
34 1pea_A Amidase operon; gene re 100.0 1.5E-33 5.2E-38 293.2 32.8 346 32-401 5-357 (385)
35 3snr_A Extracellular ligand-bi 100.0 1.2E-33 4.2E-38 291.5 26.0 337 32-398 5-361 (362)
36 2h4a_A YRAM (HI1655); perplasm 100.0 1.3E-28 4.4E-33 246.8 19.1 310 36-399 2-318 (325)
37 3ckm_A YRAM (HI1655), LPOA; pe 100.0 2.4E-28 8.1E-33 247.6 20.1 315 34-401 2-322 (327)
38 1yae_A Glutamate receptor, ion 99.6 1.6E-15 5.4E-20 152.2 7.0 123 449-577 9-142 (312)
39 4gvo_A LMO2349 protein; struct 99.5 1.2E-14 4.2E-19 140.0 6.4 108 451-574 7-117 (243)
40 1pb7_A N-methyl-D-aspartate re 99.5 9.2E-15 3.1E-19 145.0 5.0 104 452-567 40-156 (292)
41 4h5g_A Amino acid ABC superfam 99.5 1.5E-14 5.1E-19 139.4 6.3 102 451-566 10-112 (243)
42 3g3k_A Glutamate receptor, ion 99.5 2.6E-14 8.9E-19 139.1 7.3 114 452-571 3-125 (259)
43 3i6v_A Periplasmic His/Glu/Gln 99.4 1.8E-13 6.2E-18 130.8 7.5 98 452-565 4-101 (232)
44 2v3u_A Glutamate receptor delt 99.4 2.1E-13 7.2E-18 133.1 7.4 109 452-568 2-118 (265)
45 1mqi_A Glutamate receptor 2; G 99.4 2E-13 7E-18 133.1 6.8 111 452-568 3-122 (263)
46 2a5s_A N-methyl-D-aspartate re 99.4 2E-13 7E-18 134.7 6.4 82 486-567 56-144 (284)
47 2rc8_A Glutamate [NMDA] recept 99.4 1.9E-13 6.5E-18 135.7 6.2 79 487-565 68-153 (294)
48 3kzg_A Arginine 3RD transport 99.4 7.4E-13 2.5E-17 126.9 9.2 106 452-573 2-108 (237)
49 3k4u_A Binding component of AB 99.3 1.4E-12 4.9E-17 125.5 8.5 99 451-565 3-101 (245)
50 3tql_A Arginine-binding protei 99.3 2.1E-12 7.2E-17 122.5 9.1 99 453-567 2-100 (227)
51 3kbr_A Cyclohexadienyl dehydra 99.3 1.2E-12 4.1E-17 125.5 7.4 100 450-565 12-111 (239)
52 3hv1_A Polar amino acid ABC up 99.3 1.8E-12 6.3E-17 126.6 7.8 109 450-574 18-126 (268)
53 2iee_A ORF2, probable ABC tran 99.3 8E-13 2.7E-17 129.5 5.2 102 449-566 17-121 (271)
54 1lst_A Lysine, arginine, ornit 99.3 2.3E-12 8E-17 123.4 7.9 100 452-567 3-102 (239)
55 4dz1_A DALS D-alanine transpor 99.3 5.2E-12 1.8E-16 122.8 9.5 100 451-566 27-126 (259)
56 3del_B Arginine binding protei 99.3 5.9E-12 2E-16 120.9 8.1 109 451-576 9-119 (242)
57 4f3p_A Glutamine-binding perip 99.3 7.9E-12 2.7E-16 120.6 9.0 100 450-566 21-120 (249)
58 3mpk_A Virulence sensor protei 99.3 9.7E-12 3.3E-16 121.4 9.4 100 451-566 30-129 (267)
59 3h7m_A Sensor protein; histidi 99.3 1.1E-11 3.7E-16 118.2 9.2 109 451-576 9-118 (234)
60 4eq9_A ABC transporter substra 99.2 5.2E-12 1.8E-16 121.5 6.1 107 451-574 6-114 (246)
61 1ii5_A SLR1257 protein; membra 99.2 1.3E-11 4.5E-16 117.5 8.5 98 452-565 3-104 (233)
62 2y7i_A STM4351; arginine-bindi 99.2 1.5E-11 5E-16 116.9 8.8 98 452-565 5-103 (229)
63 1wdn_A GLNBP, glutamine bindin 99.2 1.6E-11 5.3E-16 116.3 8.8 98 452-566 2-99 (226)
64 2q88_A EHUB, putative ABC tran 99.2 1.6E-11 5.6E-16 119.0 8.5 98 452-566 12-110 (257)
65 2pvu_A ARTJ; basic amino acid 99.1 6.9E-11 2.4E-15 115.6 9.2 108 450-574 39-146 (272)
66 2vha_A Periplasmic binding tra 99.1 7.7E-11 2.6E-15 116.3 7.9 107 451-573 15-128 (287)
67 2pyy_A Ionotropic glutamate re 99.1 7.1E-11 2.4E-15 111.9 7.2 97 452-565 2-98 (228)
68 2yln_A Putative ABC transporte 99.1 1.2E-10 4E-15 114.8 7.6 106 452-573 56-162 (283)
69 1xt8_A Putative amino-acid tra 99.1 2.6E-10 8.8E-15 112.9 8.5 106 452-573 43-151 (292)
70 2yjp_A Putative ABC transporte 99.0 3.1E-10 1.1E-14 112.2 7.9 107 452-574 54-163 (291)
71 3qax_A Probable ABC transporte 99.0 4E-10 1.4E-14 109.7 7.7 107 452-575 30-139 (268)
72 4i62_A Amino acid ABC transpor 99.0 3E-10 1E-14 110.7 6.7 98 452-565 38-138 (269)
73 2v25_A Major cell-binding fact 99.0 6.4E-10 2.2E-14 107.6 7.8 103 452-570 37-143 (259)
74 2rjo_A Twin-arginine transloca 98.5 1E-05 3.5E-10 81.2 22.0 215 32-268 3-231 (332)
75 2h3h_A Sugar ABC transporter, 98.5 6.8E-06 2.3E-10 81.7 20.1 209 35-269 2-217 (313)
76 3brq_A HTH-type transcriptiona 98.4 7.3E-06 2.5E-10 80.6 18.3 212 32-269 17-237 (296)
77 3l49_A ABC sugar (ribose) tran 98.4 1.4E-05 4.7E-10 78.4 20.0 212 33-269 4-225 (291)
78 2x7x_A Sensor protein; transfe 98.4 2.2E-05 7.7E-10 78.4 21.1 212 32-269 4-223 (325)
79 3ksm_A ABC-type sugar transpor 98.4 1.6E-05 5.4E-10 77.2 19.3 210 35-269 1-222 (276)
80 3brs_A Periplasmic binding pro 98.4 1.7E-05 5.7E-10 77.7 19.2 211 33-268 4-224 (289)
81 2fn9_A Ribose ABC transporter, 98.4 2E-05 6.7E-10 77.3 19.1 207 35-268 3-224 (290)
82 1dbq_A Purine repressor; trans 98.4 2.5E-05 8.7E-10 76.4 19.8 212 32-268 5-223 (289)
83 3o74_A Fructose transport syst 98.4 1.8E-05 6.1E-10 76.7 18.3 210 35-269 3-216 (272)
84 2qu7_A Putative transcriptiona 98.3 7.2E-06 2.5E-10 80.4 15.1 213 32-268 6-223 (288)
85 3c3k_A Alanine racemase; struc 98.3 5.7E-05 1.9E-09 73.8 21.5 207 32-268 6-220 (285)
86 2iks_A DNA-binding transcripti 98.3 2.9E-05 9.8E-10 76.3 19.4 211 32-269 18-234 (293)
87 2qh8_A Uncharacterized protein 98.3 2.1E-05 7.2E-10 77.7 17.4 189 32-242 6-203 (302)
88 3h75_A Periplasmic sugar-bindi 98.3 0.00013 4.3E-09 73.7 23.3 219 34-269 3-242 (350)
89 3lft_A Uncharacterized protein 98.3 7.5E-05 2.6E-09 73.4 20.9 209 34-267 2-219 (295)
90 1tjy_A Sugar transport protein 98.3 5.6E-05 1.9E-09 75.1 19.7 207 36-269 5-223 (316)
91 2vk2_A YTFQ, ABC transporter p 98.2 6E-05 2.1E-09 74.4 19.5 213 34-269 2-228 (306)
92 2fep_A Catabolite control prot 98.2 4.7E-05 1.6E-09 74.6 18.0 213 31-269 13-232 (289)
93 3l6u_A ABC-type sugar transpor 98.2 0.0001 3.6E-09 72.1 20.6 212 32-269 6-229 (293)
94 2fvy_A D-galactose-binding per 98.2 9.7E-05 3.3E-09 73.0 20.2 204 35-256 3-226 (309)
95 3rot_A ABC sugar transporter, 98.2 2.3E-05 7.8E-10 77.2 15.4 214 34-269 3-226 (297)
96 3m9w_A D-xylose-binding peripl 98.2 0.00016 5.6E-09 71.5 21.1 209 35-267 3-221 (313)
97 2ioy_A Periplasmic sugar-bindi 98.2 0.00019 6.3E-09 70.0 20.9 209 35-269 2-217 (283)
98 3lkv_A Uncharacterized conserv 98.2 4.7E-05 1.6E-09 75.1 16.6 191 32-243 6-204 (302)
99 3o1i_D Periplasmic protein TOR 98.2 3.8E-05 1.3E-09 75.7 16.0 204 32-258 3-218 (304)
100 3gbv_A Putative LACI-family tr 98.1 0.00017 5.7E-09 71.0 20.3 214 32-269 6-233 (304)
101 3egc_A Putative ribose operon 98.1 5.4E-05 1.9E-09 74.1 16.6 212 32-269 6-223 (291)
102 3d02_A Putative LACI-type tran 98.1 0.00028 9.5E-09 69.4 21.5 212 33-269 3-224 (303)
103 3g1w_A Sugar ABC transporter; 98.1 0.00032 1.1E-08 69.0 21.9 212 35-269 5-222 (305)
104 3d8u_A PURR transcriptional re 98.1 0.00013 4.4E-09 70.7 18.6 209 34-268 3-217 (275)
105 2o20_A Catabolite control prot 98.1 7.2E-05 2.5E-09 74.9 17.1 212 32-269 61-276 (332)
106 3k4h_A Putative transcriptiona 98.1 0.00013 4.5E-09 71.3 18.6 212 32-268 6-228 (292)
107 3dbi_A Sugar-binding transcrip 98.1 7.4E-05 2.5E-09 75.0 17.1 213 32-269 59-279 (338)
108 3bbl_A Regulatory protein of L 98.1 6.3E-05 2.1E-09 73.6 16.1 211 33-269 3-225 (287)
109 2h0a_A TTHA0807, transcription 98.1 2.9E-05 9.8E-10 75.5 13.0 205 36-268 1-216 (276)
110 3clk_A Transcription regulator 98.1 4.4E-05 1.5E-09 74.8 14.1 210 32-268 6-221 (290)
111 8abp_A L-arabinose-binding pro 98.1 0.00018 6.2E-09 70.9 18.4 216 34-270 2-234 (306)
112 2hsg_A Glucose-resistance amyl 98.1 8.3E-05 2.8E-09 74.4 16.1 212 32-269 58-276 (332)
113 1jx6_A LUXP protein; protein-l 98.0 0.00022 7.5E-09 71.6 19.1 218 32-268 41-267 (342)
114 2rgy_A Transcriptional regulat 98.0 5.8E-05 2E-09 73.9 14.4 211 32-268 6-225 (290)
115 3hcw_A Maltose operon transcri 98.0 0.0003 1E-08 69.0 19.4 213 32-269 5-229 (295)
116 3jy6_A Transcriptional regulat 98.0 0.00021 7.3E-09 69.2 17.5 209 32-268 5-217 (276)
117 3kke_A LACI family transcripti 98.0 0.00026 8.8E-09 69.8 18.3 211 32-268 13-233 (303)
118 3gyb_A Transcriptional regulat 98.0 5.8E-05 2E-09 73.4 13.3 207 32-269 3-213 (280)
119 1qpz_A PURA, protein (purine n 97.9 0.00045 1.5E-08 69.3 19.4 211 33-268 57-274 (340)
120 3k9c_A Transcriptional regulat 97.9 0.00042 1.4E-08 67.7 18.5 209 32-268 10-221 (289)
121 3ctp_A Periplasmic binding pro 97.9 9.1E-05 3.1E-09 74.0 13.8 205 32-268 58-267 (330)
122 3gv0_A Transcriptional regulat 97.9 0.00028 9.7E-09 68.8 16.9 211 32-268 6-224 (288)
123 2dri_A D-ribose-binding protei 97.9 0.0014 4.7E-08 63.2 21.6 208 36-269 3-216 (271)
124 1byk_A Protein (trehalose oper 97.9 0.00049 1.7E-08 65.7 18.2 200 35-269 3-206 (255)
125 3e61_A Putative transcriptiona 97.9 0.00023 7.8E-09 69.0 15.5 204 32-268 6-213 (277)
126 3tb6_A Arabinose metabolism tr 97.9 0.00023 8E-09 69.7 15.1 210 35-267 16-236 (298)
127 3g85_A Transcriptional regulat 97.8 7.5E-05 2.6E-09 73.0 10.8 209 32-268 9-224 (289)
128 3huu_A Transcription regulator 97.8 0.0005 1.7E-08 67.7 16.8 210 32-269 20-239 (305)
129 3hs3_A Ribose operon repressor 97.8 0.00063 2.1E-08 65.9 17.3 203 32-268 8-214 (277)
130 2ozz_A Hypothetical protein YH 97.8 9E-06 3.1E-10 75.2 3.7 76 486-567 29-110 (231)
131 3qk7_A Transcriptional regulat 97.8 0.00033 1.1E-08 68.7 15.1 213 32-269 4-224 (294)
132 3kjx_A Transcriptional regulat 97.8 0.00058 2E-08 68.5 17.1 211 32-268 66-283 (344)
133 3h5o_A Transcriptional regulat 97.8 0.0012 3.9E-08 66.2 19.1 210 32-268 60-275 (339)
134 1gud_A ALBP, D-allose-binding 97.8 0.0031 1E-07 61.4 21.5 213 35-269 2-228 (288)
135 3e3m_A Transcriptional regulat 97.8 0.0019 6.6E-08 65.0 20.6 214 32-268 68-286 (355)
136 3bil_A Probable LACI-family tr 97.7 0.0011 3.9E-08 66.6 17.7 209 33-269 65-278 (348)
137 3jvd_A Transcriptional regulat 97.7 0.0016 5.6E-08 64.9 17.9 204 32-269 62-268 (333)
138 3uug_A Multiple sugar-binding 97.7 0.0016 5.3E-08 64.9 17.5 207 34-259 3-230 (330)
139 2fqx_A Membrane lipoprotein TM 97.6 0.0044 1.5E-07 61.3 20.1 210 33-268 3-223 (318)
140 3cs3_A Sugar-binding transcrip 97.6 0.0014 4.8E-08 63.4 16.0 191 32-258 6-202 (277)
141 3miz_A Putative transcriptiona 97.6 0.00024 8.4E-09 69.8 10.3 204 32-258 11-222 (301)
142 4fe7_A Xylose operon regulator 97.6 0.0049 1.7E-07 63.5 20.5 213 31-268 22-239 (412)
143 3s99_A Basic membrane lipoprot 97.5 0.013 4.4E-07 58.6 22.3 201 32-257 24-230 (356)
144 2hqb_A Transcriptional activat 97.5 0.016 5.5E-07 56.5 22.6 196 33-256 4-204 (296)
145 1jye_A Lactose operon represso 97.5 0.0062 2.1E-07 61.1 19.0 209 32-268 59-274 (349)
146 3qi7_A Putative transcriptiona 97.1 0.028 9.5E-07 55.6 17.7 215 32-258 10-250 (371)
147 3h5t_A Transcriptional regulat 97.0 0.0065 2.2E-07 61.4 13.9 215 32-268 66-304 (366)
148 3n5l_A Binding protein compone 96.4 0.0011 3.7E-08 65.4 2.5 100 452-573 3-110 (310)
149 3p7i_A PHND, subunit of alkylp 95.9 0.0029 9.9E-08 62.6 2.3 77 492-573 34-120 (321)
150 3ixl_A Amdase, arylmalonate de 95.2 0.18 6.2E-06 47.0 12.0 130 89-253 59-201 (240)
151 3uif_A Sulfonate ABC transport 93.5 0.073 2.5E-06 53.1 5.5 79 494-573 35-117 (348)
152 2xed_A Putative maleate isomer 93.4 2.3 7.8E-05 40.4 15.6 89 156-251 135-227 (273)
153 3ix1_A N-formyl-4-amino-5-amin 92.9 0.082 2.8E-06 51.5 4.7 85 486-573 16-104 (302)
154 2nr1_A NR1 M2, M2; receptor, s 91.7 0.033 1.1E-06 30.7 0.0 18 612-629 7-24 (27)
155 2x26_A Periplasmic aliphatic s 91.5 0.14 4.8E-06 49.9 4.4 69 497-568 24-98 (308)
156 2dgd_A 223AA long hypothetical 91.5 4 0.00014 37.3 14.2 91 155-252 96-191 (223)
157 2fqx_A Membrane lipoprotein TM 90.8 5.4 0.00019 38.7 15.2 125 36-167 131-263 (318)
158 3qsl_A Putative exported prote 90.6 0.32 1.1E-05 48.0 6.2 75 496-573 56-136 (346)
159 3s99_A Basic membrane lipoprot 89.3 5.3 0.00018 39.5 13.7 89 35-130 150-238 (356)
160 4ddd_A Immunogenic protein; ss 88.0 0.84 2.9E-05 44.8 6.8 87 486-575 44-146 (327)
161 2hqb_A Transcriptional activat 87.8 7.7 0.00026 37.1 13.6 120 36-168 128-247 (296)
162 3ksx_A Nitrate transport prote 87.4 0.51 1.7E-05 46.2 4.9 74 497-573 50-129 (324)
163 3un6_A Hypothetical protein sa 87.3 0.33 1.1E-05 48.1 3.4 66 500-568 78-146 (341)
164 2q5c_A NTRC family transcripti 86.7 17 0.00057 32.3 17.3 159 35-259 5-163 (196)
165 2eq5_A 228AA long hypothetical 85.7 4.6 0.00016 37.0 10.2 175 34-252 6-194 (228)
166 2pju_A Propionate catabolism o 84.1 23 0.00078 32.2 13.8 163 35-259 13-175 (225)
167 2zsk_A PH1733, 226AA long hypo 80.8 11 0.00038 34.4 10.6 76 93-202 69-144 (226)
168 1jfl_A Aspartate racemase; alp 80.3 2.1 7.2E-05 39.4 5.5 40 86-126 63-102 (228)
169 3lr1_A Tungstate ABC transport 79.5 2.5 8.5E-05 39.0 5.6 76 488-567 18-96 (236)
170 3muq_A Uncharacterized conserv 79.0 3 0.0001 38.5 6.0 76 488-567 18-96 (237)
171 3s81_A Putative aspartate race 76.8 1.6 5.6E-05 41.2 3.6 41 86-127 88-128 (268)
172 3jv9_A OXYR, transcriptional r 75.6 11 0.00038 33.3 9.0 69 489-565 17-86 (219)
173 3bfj_A 1,3-propanediol oxidore 75.6 9.6 0.00033 38.2 9.1 88 157-252 23-114 (387)
174 3ox4_A Alcohol dehydrogenase 2 74.4 5.8 0.0002 39.7 7.1 80 155-242 19-98 (383)
175 2l82_A Designed protein OR32; 73.0 30 0.001 26.6 10.2 99 144-258 4-105 (162)
176 1twy_A ABC transporter, peripl 72.7 8.8 0.0003 36.0 7.8 72 490-566 41-114 (290)
177 3m9w_A D-xylose-binding peripl 72.5 9.2 0.00031 36.7 8.0 80 168-257 3-84 (313)
178 1zbm_A Hypothetical protein AF 72.3 1.6 5.6E-05 41.4 2.4 59 503-565 37-98 (280)
179 1atg_A MODA, periplasmic molyb 71.8 5.1 0.00018 36.1 5.7 74 490-567 13-92 (231)
180 2k1e_A Water soluble analogue 71.7 5.4 0.00019 31.2 4.9 41 590-634 21-62 (103)
181 4gd5_A Phosphate ABC transport 70.2 2.7 9.1E-05 40.0 3.4 36 32-75 36-71 (279)
182 2x7q_A Ca3427, possible thiami 70.1 6.3 0.00021 38.2 6.1 77 490-568 30-113 (321)
183 2zzv_A ABC transporter, solute 69.8 8.3 0.00029 38.2 7.0 62 492-553 53-118 (361)
184 2f5x_A BUGD; periplasmic bindi 67.7 17 0.00058 35.1 8.5 82 486-570 30-126 (312)
185 3g1w_A Sugar ABC transporter; 67.2 9.5 0.00032 36.4 6.7 81 168-257 5-87 (305)
186 2jfn_A Glutamate racemase; cel 67.1 27 0.00093 33.1 9.7 40 88-127 75-114 (285)
187 2y7p_A LYSR-type regulatory pr 65.6 13 0.00043 33.4 6.9 70 489-566 21-91 (218)
188 3l49_A ABC sugar (ribose) tran 65.5 16 0.00054 34.4 7.9 81 167-257 5-87 (291)
189 3cvg_A Putative metal binding 65.4 9.7 0.00033 36.4 6.3 75 488-566 32-116 (294)
190 4dik_A Flavoprotein; TM0755, e 65.1 69 0.0024 32.1 12.7 94 168-272 266-365 (410)
191 3k9c_A Transcriptional regulat 64.9 56 0.0019 30.5 11.8 118 35-162 127-251 (289)
192 2gzm_A Glutamate racemase; enz 64.8 37 0.0013 31.7 10.1 122 89-245 58-189 (267)
193 3gbv_A Putative LACI-family tr 64.0 20 0.0007 33.8 8.5 88 163-257 4-95 (304)
194 3uhj_A Probable glycerol dehyd 64.0 11 0.00039 37.5 6.7 74 157-242 43-116 (387)
195 1rrm_A Lactaldehyde reductase; 63.6 10 0.00036 37.9 6.4 89 157-253 21-111 (386)
196 1us5_A Putative GLUR0 ligand b 62.7 17 0.00057 34.8 7.6 77 492-571 37-127 (314)
197 2ih3_C Voltage-gated potassium 62.7 12 0.0004 30.4 5.3 41 590-634 42-83 (122)
198 3ojc_A Putative aspartate/glut 62.3 4.8 0.00017 37.0 3.3 59 91-177 70-128 (231)
199 8abp_A L-arabinose-binding pro 61.4 23 0.00079 33.5 8.3 79 168-257 3-83 (306)
200 4exl_A PBP 1, phosphate-bindin 61.3 29 0.00098 32.4 8.6 72 491-566 18-92 (265)
201 1vlj_A NADH-dependent butanol 61.1 20 0.00069 36.0 8.0 87 157-251 33-122 (407)
202 3jvd_A Transcriptional regulat 60.1 82 0.0028 30.2 12.2 118 34-163 174-298 (333)
203 1o2d_A Alcohol dehydrogenase, 60.0 50 0.0017 32.6 10.5 99 142-251 19-119 (371)
204 3uug_A Multiple sugar-binding 60.0 20 0.0007 34.4 7.7 80 168-257 4-85 (330)
205 3o74_A Fructose transport syst 59.8 83 0.0028 28.8 11.8 117 35-162 121-245 (272)
206 2qpq_A Protein BUG27; alpha/be 59.7 23 0.00077 34.0 7.7 82 486-570 21-117 (301)
207 3ksm_A ABC-type sugar transpor 59.0 29 0.00099 32.1 8.4 122 33-162 126-254 (276)
208 4ecf_A ABC-type phosphate tran 58.8 26 0.00089 32.7 7.9 73 490-566 17-92 (264)
209 2dvz_A BUGE, putative exported 58.8 21 0.00072 34.4 7.3 81 487-570 33-130 (314)
210 1b73_A Glutamate racemase; iso 58.5 29 0.00098 32.2 8.0 123 87-245 53-183 (254)
211 3l6u_A ABC-type sugar transpor 58.2 25 0.00085 33.0 7.8 83 165-257 6-90 (293)
212 3d02_A Putative LACI-type tran 57.6 21 0.00071 33.8 7.2 81 168-257 5-87 (303)
213 3hcw_A Maltose operon transcri 57.3 66 0.0023 30.1 10.7 116 35-162 132-258 (295)
214 2vvt_A Glutamate racemase; iso 56.9 18 0.00062 34.4 6.4 122 88-244 78-209 (290)
215 1mkz_A Molybdenum cofactor bio 56.7 44 0.0015 28.8 8.3 66 168-241 11-78 (172)
216 1jq5_A Glycerol dehydrogenase; 56.4 37 0.0012 33.6 8.9 95 142-250 10-106 (370)
217 3kn3_A Putative periplasmic pr 56.2 7.2 0.00025 36.0 3.3 75 488-566 18-95 (242)
218 3ce9_A Glycerol dehydrogenase; 56.1 40 0.0014 33.1 9.0 95 142-250 12-108 (354)
219 3gzg_A Molybdate-binding perip 56.0 17 0.00058 33.8 5.9 72 491-566 37-114 (253)
220 3oxn_A Putative transcriptiona 55.5 27 0.00093 31.4 7.4 70 489-566 32-102 (241)
221 3r26_A Molybdate-binding perip 55.5 18 0.00061 33.2 6.0 71 491-565 21-97 (237)
222 2g29_A Nitrate transport prote 55.4 8.3 0.00029 39.1 4.0 65 498-565 56-134 (417)
223 2oho_A Glutamate racemase; iso 55.2 32 0.0011 32.3 7.8 36 91-126 68-103 (273)
224 4dik_A Flavoprotein; TM0755, e 55.0 1.7E+02 0.0059 29.1 17.3 153 35-208 231-389 (410)
225 2dwu_A Glutamate racemase; iso 54.8 47 0.0016 31.2 8.9 123 88-245 61-193 (276)
226 3rot_A ABC sugar transporter, 54.7 12 0.00042 35.4 5.0 82 168-257 4-87 (297)
227 1zuw_A Glutamate racemase 1; ( 54.6 31 0.001 32.4 7.5 123 88-244 57-189 (272)
228 2jfq_A Glutamate racemase; cel 54.6 24 0.00084 33.4 6.9 38 89-127 77-114 (286)
229 1i6a_A OXYR, hydrogen peroxide 54.5 29 0.001 30.6 7.3 69 489-565 18-87 (219)
230 3onm_A Transcriptional regulat 53.6 36 0.0012 30.6 7.9 69 489-567 40-109 (238)
231 1tjy_A Sugar transport protein 53.5 12 0.00042 36.0 4.7 81 168-257 4-86 (316)
232 2a9h_A Voltage-gated potassium 53.2 20 0.00068 30.4 5.4 41 590-634 65-106 (155)
233 3ist_A Glutamate racemase; str 52.4 53 0.0018 30.7 8.7 37 89-126 60-96 (269)
234 2fn9_A Ribose ABC transporter, 51.8 27 0.00091 32.8 6.8 80 168-257 3-84 (290)
235 3gyb_A Transcriptional regulat 51.7 39 0.0013 31.4 8.0 117 35-162 119-242 (280)
236 2l69_A Rossmann 2X3 fold prote 51.7 71 0.0024 23.7 7.7 53 144-202 53-105 (134)
237 3h5o_A Transcriptional regulat 51.6 1.3E+02 0.0045 28.7 12.1 120 35-162 179-305 (339)
238 3h75_A Periplasmic sugar-bindi 51.3 23 0.00078 34.5 6.4 80 167-257 3-87 (350)
239 2pfy_A Putative exported prote 51.2 31 0.001 32.9 7.1 62 492-553 21-85 (301)
240 3qvl_A Putative hydantoin race 51.0 1.2E+02 0.0041 27.8 10.8 85 35-127 2-97 (245)
241 3ho7_A OXYR; beta-alpha-barrel 50.9 32 0.0011 30.6 7.0 70 489-566 24-94 (232)
242 4edp_A ABC transporter, substr 50.5 6.3 0.00021 38.5 2.1 64 1-75 4-69 (351)
243 2h3h_A Sugar ABC transporter, 50.1 24 0.00082 33.7 6.2 80 169-257 3-83 (313)
244 3hl0_A Maleylacetate reductase 50.0 16 0.00055 36.0 4.9 86 142-242 12-97 (353)
245 3tmg_A Glycine betaine, L-prol 49.2 41 0.0014 31.7 7.6 81 492-576 32-119 (280)
246 2hxr_A HTH-type transcriptiona 49.0 46 0.0016 29.7 7.8 70 489-566 43-113 (238)
247 4ab5_A Transcriptional regulat 48.2 20 0.00067 31.7 5.0 70 489-566 21-91 (222)
248 2ql3_A Probable transcriptiona 48.2 39 0.0013 29.4 7.0 68 490-565 19-87 (209)
249 1p99_A Hypothetical protein PG 47.8 18 0.0006 34.6 4.7 45 32-86 38-82 (295)
250 4gd5_A Phosphate ABC transport 47.7 37 0.0013 31.8 7.1 71 493-567 53-124 (279)
251 3jzd_A Iron-containing alcohol 47.7 16 0.00054 36.1 4.4 75 156-242 25-99 (358)
252 2pfz_A Putative exported prote 46.9 34 0.0012 32.6 6.7 61 492-552 20-83 (301)
253 1ixh_A Phosphate-binding prote 46.7 26 0.0009 33.8 5.9 72 491-566 16-88 (321)
254 3tb6_A Arabinose metabolism tr 46.4 57 0.0019 30.4 8.3 79 168-257 16-100 (298)
255 2hzl_A Trap-T family sorbitol/ 46.1 32 0.0011 33.9 6.5 60 493-552 53-116 (365)
256 3iwt_A 178AA long hypothetical 45.9 44 0.0015 28.9 6.7 65 169-241 17-90 (178)
257 2is8_A Molybdopterin biosynthe 45.7 61 0.0021 27.6 7.4 65 169-241 3-71 (164)
258 1jx6_A LUXP protein; protein-l 45.3 42 0.0014 32.4 7.2 83 168-257 44-129 (342)
259 2fvy_A D-galactose-binding per 45.1 51 0.0017 31.0 7.7 80 168-257 3-85 (309)
260 2fp4_A Succinyl-COA ligase [GD 45.1 2.1E+02 0.0071 27.2 12.4 145 81-254 80-234 (305)
261 3kjx_A Transcriptional regulat 45.1 83 0.0028 30.3 9.4 118 36-162 187-313 (344)
262 3dbi_A Sugar-binding transcrip 45.0 51 0.0017 31.7 7.8 85 162-257 56-144 (338)
263 3d8u_A PURR transcriptional re 44.8 1.4E+02 0.0049 27.2 10.8 120 35-163 121-248 (275)
264 2xmo_A LMO2642 protein; phosph 44.4 41 0.0014 34.0 7.2 13 32-44 37-49 (443)
265 3jy6_A Transcriptional regulat 44.1 53 0.0018 30.4 7.5 79 166-257 6-86 (276)
266 3tpf_A Otcase, ornithine carba 43.8 2.2E+02 0.0075 27.1 13.3 129 35-204 37-176 (307)
267 2l69_A Rossmann 2X3 fold prote 43.8 97 0.0033 23.0 8.8 95 141-251 25-119 (134)
268 3qk7_A Transcriptional regulat 43.5 2E+02 0.0069 26.6 12.6 120 35-163 127-255 (294)
269 3cs3_A Sugar-binding transcrip 43.3 1.5E+02 0.0052 27.1 10.7 116 35-162 119-243 (277)
270 2pjk_A 178AA long hypothetical 42.9 1E+02 0.0035 26.6 8.5 69 165-241 13-90 (178)
271 4esw_A Pyrimidine biosynthesis 42.6 31 0.0011 33.5 5.8 88 486-576 20-112 (342)
272 3rfq_A Pterin-4-alpha-carbinol 42.4 59 0.002 28.4 6.8 66 168-241 31-98 (185)
273 2fyi_A HTH-type transcriptiona 41.9 56 0.0019 29.0 7.1 70 489-565 27-97 (228)
274 3zy2_A Putative GDP-fucose pro 41.4 1.4E+02 0.0047 28.9 9.5 90 147-257 260-349 (362)
275 4dz1_A DALS D-alanine transpor 41.2 50 0.0017 30.2 6.8 55 165-237 135-190 (259)
276 3g85_A Transcriptional regulat 40.8 1.1E+02 0.0037 28.3 9.2 122 35-163 128-257 (289)
277 1y5e_A Molybdenum cofactor bio 40.6 98 0.0034 26.4 8.0 68 166-241 12-81 (169)
278 3l6g_A Betaine ABC transporter 40.4 71 0.0024 29.5 7.6 81 490-574 16-103 (256)
279 3p6l_A Sugar phosphate isomera 39.7 1.6E+02 0.0055 26.8 10.1 94 155-257 24-129 (262)
280 3umf_A Adenylate kinase; rossm 39.5 11 0.00037 34.2 1.6 37 92-128 25-61 (217)
281 2x7x_A Sensor protein; transfe 39.4 80 0.0027 30.1 8.2 81 167-257 6-88 (325)
282 3e3m_A Transcriptional regulat 38.9 1.2E+02 0.0041 29.3 9.5 121 35-163 188-317 (355)
283 3r7f_A Aspartate carbamoyltran 38.8 88 0.003 29.8 7.9 135 35-204 37-179 (304)
284 2g2c_A Putative molybdenum cof 38.7 72 0.0025 27.2 6.8 65 169-241 7-78 (167)
285 2rjo_A Twin-arginine transloca 38.7 50 0.0017 31.7 6.6 80 168-257 6-89 (332)
286 3eff_K Voltage-gated potassium 38.6 38 0.0013 27.9 4.8 39 592-634 23-62 (139)
287 3brq_A HTH-type transcriptiona 38.4 73 0.0025 29.6 7.6 84 162-257 14-102 (296)
288 2ioy_A Periplasmic sugar-bindi 38.3 53 0.0018 30.6 6.5 80 168-257 2-83 (283)
289 3k4h_A Putative transcriptiona 37.7 38 0.0013 31.6 5.4 82 164-257 5-93 (292)
290 2h9b_A HTH-type transcriptiona 37.7 73 0.0025 30.0 7.5 69 489-565 103-172 (312)
291 1byk_A Protein (trehalose oper 37.5 71 0.0024 29.0 7.2 114 36-162 117-235 (255)
292 2dri_A D-ribose-binding protei 37.5 56 0.0019 30.1 6.5 80 168-257 2-83 (271)
293 3kke_A LACI family transcripti 37.3 65 0.0022 30.4 7.0 86 160-257 8-95 (303)
294 3cij_A UPF0100 protein AF_0094 37.0 69 0.0024 30.1 7.2 71 491-565 19-95 (295)
295 3cfz_A UPF0100 protein MJ1186; 36.8 68 0.0023 30.2 7.0 72 490-565 18-95 (292)
296 3cfx_A UPF0100 protein MA_0280 36.4 74 0.0025 30.0 7.2 71 491-565 19-95 (296)
297 3c3k_A Alanine racemase; struc 35.9 2E+02 0.007 26.4 10.3 116 35-162 125-250 (285)
298 1ta9_A Glycerol dehydrogenase; 35.4 61 0.0021 33.0 6.6 82 157-249 81-164 (450)
299 3gv0_A Transcriptional regulat 35.1 1.1E+02 0.0039 28.3 8.3 119 34-162 127-254 (288)
300 2v25_A Major cell-binding fact 34.9 75 0.0026 28.6 6.9 70 493-565 161-232 (259)
301 2bon_A Lipid kinase; DAG kinas 34.9 94 0.0032 30.0 7.8 94 144-255 12-105 (332)
302 2o20_A Catabolite control prot 34.9 1.7E+02 0.0059 27.7 9.8 118 35-162 181-305 (332)
303 3e61_A Putative transcriptiona 34.8 55 0.0019 30.3 6.0 78 166-257 7-87 (277)
304 1gud_A ALBP, D-allose-binding 34.1 1.4E+02 0.0048 27.6 8.8 121 34-162 133-260 (288)
305 3huu_A Transcription regulator 34.0 33 0.0011 32.5 4.3 86 160-257 15-107 (305)
306 2fep_A Catabolite control prot 33.9 70 0.0024 29.8 6.6 78 168-257 17-96 (289)
307 3fzv_A Probable transcriptiona 33.8 77 0.0026 29.6 6.9 70 489-566 108-179 (306)
308 2h98_A HTH-type transcriptiona 33.7 96 0.0033 29.3 7.6 68 489-564 103-171 (313)
309 1dbq_A Purine repressor; trans 33.3 2.8E+02 0.0097 25.3 11.2 118 36-162 128-253 (289)
310 3hs3_A Ribose operon repressor 33.3 50 0.0017 30.6 5.4 69 161-240 4-75 (277)
311 3sr0_A Adenylate kinase; phosp 32.9 18 0.00063 32.3 2.0 31 98-128 2-32 (206)
312 2rgy_A Transcriptional regulat 32.8 2.9E+02 0.01 25.3 11.4 119 35-162 129-255 (290)
313 4a8p_A Putrescine carbamoyltra 32.6 2.8E+02 0.0095 27.0 10.4 133 35-204 42-183 (355)
314 3uor_A ABC transporter sugar b 32.5 42 0.0014 34.2 5.0 26 52-77 41-66 (458)
315 3kbq_A Protein TA0487; structu 32.0 1E+02 0.0036 26.4 6.6 61 169-237 5-68 (172)
316 2b4l_A Glycine betaine-binding 31.8 89 0.0031 29.1 6.7 70 492-565 181-257 (268)
317 2iks_A DNA-binding transcripti 31.8 37 0.0013 31.8 4.2 85 162-257 15-101 (293)
318 3clk_A Transcription regulator 31.8 2.4E+02 0.0082 25.9 10.1 120 35-163 126-252 (290)
319 3fni_A Putative diflavin flavo 31.7 2.2E+02 0.0076 23.7 8.8 89 168-269 5-97 (159)
320 3lvu_A ABC transporter, peripl 31.4 63 0.0022 29.7 5.7 42 492-537 145-186 (258)
321 1ixc_A CBNR, LYSR-type regulat 31.2 82 0.0028 29.1 6.6 69 489-565 104-173 (294)
322 2lnd_A De novo designed protei 30.7 1.3E+02 0.0043 21.7 5.6 40 218-257 38-78 (112)
323 2qip_A Protein of unknown func 30.6 2.4E+02 0.0082 23.7 8.8 95 156-257 36-134 (165)
324 3grf_A Ornithine carbamoyltran 30.5 2.6E+02 0.0089 26.8 9.8 133 35-204 45-192 (328)
325 3egc_A Putative ribose operon 30.0 50 0.0017 30.9 4.8 81 165-257 6-88 (291)
326 3dnf_A ISPH, LYTB, 4-hydroxy-3 30.0 1E+02 0.0035 29.1 6.6 53 73-125 186-239 (297)
327 4f2g_A Otcase 1, ornithine car 29.8 1.5E+02 0.0051 28.3 7.8 129 35-204 46-184 (309)
328 1twy_A ABC transporter, peripl 29.6 32 0.0011 32.0 3.3 57 32-104 27-83 (290)
329 3lmz_A Putative sugar isomeras 29.4 1.9E+02 0.0065 26.2 8.7 94 155-257 32-127 (257)
330 3pam_A Transmembrane protein; 29.2 63 0.0021 29.7 5.2 42 492-537 144-185 (259)
331 4f2d_A L-arabinose isomerase; 29.1 90 0.0031 32.2 6.7 80 50-130 26-106 (500)
332 3dmy_A Protein FDRA; predicted 28.7 4.3E+02 0.015 26.9 11.6 145 81-256 45-198 (480)
333 1pvv_A Otcase, ornithine carba 28.5 3.9E+02 0.013 25.4 11.4 133 35-204 47-185 (315)
334 4a8t_A Putrescine carbamoyltra 28.3 2.7E+02 0.0092 26.9 9.5 129 35-204 64-205 (339)
335 1jye_A Lactose operon represso 28.3 87 0.003 30.2 6.3 63 166-237 60-124 (349)
336 2vk2_A YTFQ, ABC transporter p 28.3 89 0.0031 29.3 6.3 79 168-257 3-84 (306)
337 3ldc_A Calcium-gated potassium 28.1 1.1E+02 0.0039 22.2 5.4 22 613-634 28-50 (82)
338 2ozz_A Hypothetical protein YH 28.1 81 0.0028 28.6 5.5 69 493-566 125-200 (231)
339 3o1i_D Periplasmic protein TOR 27.9 47 0.0016 31.2 4.2 81 168-257 6-88 (304)
340 3fxq_A LYSR type regulator of 27.6 1.2E+02 0.0039 28.4 7.0 72 489-566 105-177 (305)
341 3o6p_A Peptide ABC transporter 27.6 67 0.0023 28.8 5.0 42 492-537 115-158 (229)
342 2esn_A Probable transcriptiona 27.4 80 0.0027 29.6 5.8 70 489-566 114-187 (310)
343 1uuy_A CNX1, molybdopterin bio 27.3 1.7E+02 0.0057 24.8 7.2 66 168-241 6-80 (167)
344 3bil_A Probable LACI-family tr 27.1 4.1E+02 0.014 25.2 11.4 118 35-164 185-309 (348)
345 1uth_A LYSR-type regulatory pr 27.0 93 0.0032 29.3 6.2 69 490-566 119-188 (315)
346 1jlj_A Gephyrin; globular alph 26.8 1.7E+02 0.0057 25.5 7.2 69 165-241 12-87 (189)
347 2rin_A Putative glycine betain 26.8 73 0.0025 30.2 5.3 78 493-574 24-112 (298)
348 3okf_A 3-dehydroquinate syntha 26.5 1.7E+02 0.0057 29.0 7.9 90 142-242 41-133 (390)
349 4h33_A LMO2059 protein; bilaye 26.4 1.1E+02 0.0037 25.1 5.5 22 613-634 43-65 (137)
350 2xwv_A Sialic acid-binding per 26.2 1.4E+02 0.0048 28.4 7.2 46 492-537 22-69 (312)
351 2w7y_A FCSSBP, probable sugar 26.0 74 0.0025 31.8 5.5 50 52-103 56-105 (430)
352 3gd5_A Otcase, ornithine carba 26.0 3.3E+02 0.011 26.0 9.6 133 35-204 49-187 (323)
353 4ep1_A Otcase, ornithine carba 25.8 2.5E+02 0.0087 27.1 8.7 129 35-204 71-209 (340)
354 3tsm_A IGPS, indole-3-glycerol 25.7 3.5E+02 0.012 25.1 9.5 87 156-258 82-171 (272)
355 1pc3_A Phosphate-binding prote 25.4 57 0.0019 31.9 4.3 70 492-565 42-114 (350)
356 2qu7_A Putative transcriptiona 25.4 1.6E+02 0.0054 27.2 7.5 119 35-162 123-253 (288)
357 3sds_A Ornithine carbamoyltran 25.4 3.8E+02 0.013 26.0 10.0 132 35-204 67-218 (353)
358 2ef0_A Ornithine carbamoyltran 25.3 4.4E+02 0.015 24.9 10.9 132 35-204 46-184 (301)
359 1sw5_A Osmoprotection protein 25.2 1E+02 0.0036 28.6 6.0 82 493-576 23-134 (275)
360 2qh8_A Uncharacterized protein 24.8 2.2E+02 0.0075 26.5 8.4 113 33-162 139-254 (302)
361 2vha_A Periplasmic binding tra 24.5 1.5E+02 0.0051 27.3 7.1 69 493-564 143-218 (287)
362 1dxh_A Ornithine carbamoyltran 24.3 3.3E+02 0.011 26.2 9.2 130 35-204 46-186 (335)
363 2pbq_A Molybdenum cofactor bio 24.2 1.9E+02 0.0064 24.8 7.0 64 169-241 7-77 (178)
364 4es6_A Uroporphyrinogen-III sy 23.9 85 0.0029 28.8 5.0 87 154-254 115-206 (254)
365 3l4e_A Uncharacterized peptida 23.8 1.3E+02 0.0043 26.7 5.9 100 155-271 15-123 (206)
366 1oj7_A Hypothetical oxidoreduc 23.8 93 0.0032 31.1 5.6 82 158-251 43-127 (408)
367 3hly_A Flavodoxin-like domain; 23.7 1.5E+02 0.0051 24.8 6.2 88 169-270 2-93 (161)
368 3g23_A Peptidase U61, LD-carbo 23.7 2.4E+02 0.0083 26.2 8.1 82 168-253 4-89 (274)
369 1qpz_A PURA, protein (purine n 23.6 4.6E+02 0.016 24.6 11.1 119 35-162 178-304 (340)
370 3brs_A Periplasmic binding pro 23.5 4.2E+02 0.014 24.0 13.5 120 34-162 131-257 (289)
371 3miz_A Putative transcriptiona 23.4 1.9E+02 0.0064 26.9 7.6 69 159-237 5-76 (301)
372 3bbl_A Regulatory protein of L 23.4 4.2E+02 0.015 24.1 12.1 119 35-162 126-254 (287)
373 2hsg_A Glucose-resistance amyl 23.3 1E+02 0.0036 29.3 5.8 80 166-257 59-140 (332)
374 1m3s_A Hypothetical protein YC 23.2 3.4E+02 0.012 22.9 9.3 43 85-127 26-69 (186)
375 3cg1_A UPF0100 protein PF0080; 22.9 1.3E+02 0.0045 28.1 6.3 70 492-565 20-100 (296)
376 1nrz_A PTS system, sorbose-spe 22.8 2.1E+02 0.007 24.3 6.7 80 154-249 14-93 (164)
377 1ccw_A Protein (glutamate muta 22.7 3.1E+02 0.01 22.2 9.5 86 169-269 5-94 (137)
378 1oth_A Protein (ornithine tran 22.4 3.1E+02 0.011 26.2 8.6 129 35-204 47-185 (321)
379 3t6k_A Response regulator rece 22.4 2.7E+02 0.0093 21.8 7.5 58 184-256 15-74 (136)
380 1di6_A MOGA, molybdenum cofact 22.1 2E+02 0.0069 25.2 6.8 66 168-241 4-75 (195)
381 4edp_A ABC transporter, substr 22.1 1.2E+02 0.0041 29.0 6.0 71 490-564 49-148 (351)
382 2csu_A 457AA long hypothetical 21.9 1.1E+02 0.0037 31.2 5.7 144 81-256 73-227 (457)
383 2zay_A Response regulator rece 21.9 2.6E+02 0.0088 22.2 7.3 55 185-254 20-76 (147)
384 1vsq_C Mannose-specific phosph 21.8 1.9E+02 0.0065 24.6 6.3 80 154-249 17-96 (165)
385 3k6v_A Solute-binding protein 21.8 1.6E+02 0.0056 28.6 6.8 71 492-566 58-134 (354)
386 1jeo_A MJ1247, hypothetical pr 21.8 3.6E+02 0.012 22.6 9.4 44 84-127 28-72 (180)
387 1al3_A Cys regulon transcripti 21.7 1.6E+02 0.0055 27.7 6.8 71 489-566 106-177 (324)
388 3pzy_A MOG; ssgcid, seattle st 21.6 1.8E+02 0.0061 24.6 6.2 65 168-241 8-75 (164)
389 2q9u_A A-type flavoprotein; fl 21.6 5.5E+02 0.019 25.1 11.0 87 167-267 256-349 (414)
390 2i6u_A Otcase, ornithine carba 21.5 5E+02 0.017 24.5 9.9 134 35-204 40-179 (307)
391 2q5c_A NTRC family transcripti 20.9 3.5E+02 0.012 23.5 8.2 51 69-129 118-168 (196)
392 3qax_A Probable ABC transporte 20.8 33 0.0011 31.4 1.4 18 220-237 168-185 (268)
393 3omb_A Extracellular solute-bi 20.8 1.2E+02 0.0042 31.3 6.1 15 218-232 186-200 (535)
394 2qv7_A Diacylglycerol kinase D 20.7 2.7E+02 0.0093 26.6 8.2 78 167-254 24-102 (337)
395 1ryo_A Serotransferrin; iron t 20.7 1.1E+02 0.0037 29.6 5.0 41 491-534 19-62 (327)
396 1r9l_A Glycine betaine-binding 20.6 1.4E+02 0.0049 28.3 6.0 70 492-564 24-101 (309)
397 4eys_A MCCC family protein; MC 20.4 1.8E+02 0.0063 28.2 6.7 64 36-103 7-79 (346)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=3.4e-69 Score=617.79 Aligned_cols=538 Identities=18% Similarity=0.310 Sum_probs=440.6
Q ss_pred eEEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCC-CHHHHHHHHHHHhhcCCeEEEEcCCChhhHHH
Q 006683 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR-DPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (635)
Q Consensus 34 ~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~-~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~ 112 (635)
+||||+++|+++. ....|+++|+|+||+++ ++|+++++|+++ ++..+.+++|+++ +++|.+||||.+|..+.+
T Consensus 2 ~ikIG~l~~~tg~---~~~~a~~lAveeiN~~~--~~l~~~~~D~~~~~~~~a~~~~~~l~-~~~V~aiiG~~~S~~~~a 75 (823)
T 3kg2_A 2 SIQIGGLFPRGAD---QEYSAFRVGMVQFSTSE--FRLTPHIDNLEVANSFAVTNAFCSQF-SRGVYAIFGFYDKKSVNT 75 (823)
T ss_dssp EEEEEEEEETTCH---HHHHHHHHHHHHTCCSS--CEEEEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCCTTTHHH
T ss_pred cceEEEEeCCCCh---HHHHHHHHHHHHHhcCC--eEEEEEEEEcCCCChHHHHHHHHHHH-hcCcEEEEcCCChhHHHH
Confidence 6999999999965 78899999999999996 999999999998 9999999999999 679999999999999999
Q ss_pred HHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHH
Q 006683 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEA 192 (635)
Q Consensus 113 v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~ 192 (635)
++++++.+++|+|++. .+.. ..+||+||+.|+ ++.+++++++++||++|++|+ +++|| ....+.+++.
T Consensus 76 ~~~i~~~~~iP~is~~----~~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d~~~g--~~~~~~~~~~ 143 (823)
T 3kg2_A 76 ITSFCGTLHVSFITPS----FPTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRG--LSTLQAVLDS 143 (823)
T ss_dssp HHHHHHHTTCEEEECS----CCCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-CGGGC--THHHHHHHHH
T ss_pred HHHHhhcCCCceeecc----cCCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-eCChh--HHHHHHHHHH
Confidence 9999999999999973 3333 357899999999 889999999999999999999 67889 9999999999
Q ss_pred HhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEeeCchhh
Q 006683 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVAN 272 (635)
Q Consensus 193 l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~ 272 (635)
+++.| +||+..+.++......+ .|++.++++++++++|+|++ .+...++..+++++.++|+.++.|+||.++.+..
T Consensus 144 ~~~~g-~~v~~~~~~~~~~~~~~--~d~~~~l~~i~~~~~~vii~-~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~ 219 (823)
T 3kg2_A 144 AAEKK-WQVTAINVGNINNDKKD--ETYRSLFQDLELKKERRVIL-DCERDKVNDIVDQVITIGKHVKGYHYIIANLGFT 219 (823)
T ss_dssp HHHTT-CEEEEEECSSCCSSSTT--TTTTTHHHHTTTTTCCEEEE-ECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSS
T ss_pred hhccC-CceEEEEeecCCCCccc--hhHHHHHHHHHhcCCeEEEE-ECCHHHHHHHHHHHHHcCcCCCCeEEEEeccccc
Confidence 99999 99999887766521111 57889999999999999999 9999999999999999999998899999885433
Q ss_pred hhcccChhhhhhccceEEEEeecCCCCchhHHHHHHHHHhhccCCCCCCCCCCcchhhhHhhHHHHHHHHHHhhccc---
Q 006683 273 ALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNYN--- 349 (635)
Q Consensus 273 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~~--- 349 (635)
..+.. .......|++++..+.++. |.+++|.++|+++|..+++......++.+++++||||+++++|+++++.+
T Consensus 220 ~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~ 296 (823)
T 3kg2_A 220 DGDLL--KIQFGGAEVSGFQIVDYDD-SLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIE 296 (823)
T ss_dssp SSCCS--SSSSSBCEEEEEESSCTTS-HHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ccchH--HhhcCCCCceEeeeecCCc-hHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 22211 1123345577777765554 78999999999888766554444457788999999999999999997631
Q ss_pred -----------------CCChHHHHHHHHcCcccceeeeEEEeCCCCCCCCcEEEEEeeCCceEEEEeecCCCCCccccC
Q 006683 350 -----------------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKTSS 412 (635)
Q Consensus 350 -----------------~~~~~~l~~~l~~~~f~g~~G~v~F~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~~~~~~~~ 412 (635)
+.++++|+++|++++|+|++|+++||++|++.+..|+|++++++++++||.|++..++.....
T Consensus 297 ~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~~vg~w~~~~g~~~~~~ 376 (823)
T 3kg2_A 297 ISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVLTED 376 (823)
T ss_dssp CCCSSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEEEEEEEETTTEEEECCC
T ss_pred cccCCCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCCeeEEEEcCCCCceeccC
Confidence 256889999999999999999999999999988999999999999999999998766543210
Q ss_pred CCccCCCCCcccccCCCcccccCCCCcCcCCCccccCCCCCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeH
Q 006683 413 KHNVGDISSNIAAEGFTGPVIWPGNLINRNPKGWAMPSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSI 492 (635)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~i~Wp~~~~~~~P~~~~~~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~ 492 (635)
.. ....+++|+|++... +||++.+++.+. .++ +.+++|||+
T Consensus 377 -------------------------------~~--~~~~~~~l~v~~~~~---~P~~~~~~~~~~-~~~--~~~~~G~~~ 417 (823)
T 3kg2_A 377 -------------------------------DT--SGLEQKTVVVTTILE---SPYVMMKANHAA-LAG--NERYEGYCV 417 (823)
T ss_dssp -------------------------------CC--SSCCCCCEEEEECCC---TTTSEECTTGGG-CCG--GGGEESHHH
T ss_pred -------------------------------cc--cccCCCEEEEEEecC---CCcEEEecCccc-cCC--CCceEEEHH
Confidence 00 123578999999654 577776432100 011 348999999
Q ss_pred HHHHHHHHHCCCcccEEEecC---------CCChhhHHHHHHcCcccEEEecccccccccccccccccceeeeeEEEEeC
Q 006683 493 ELFRLVVDHLNYDLPYEFVPH---------DGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPA 563 (635)
Q Consensus 493 dl~~~la~~l~~~~~~~~~~~---------~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~ 563 (635)
||++++|+++|++++++.+++ +|+|++++++|.+|++|++++++++|++|.+.+|||.||+.+++++++|+
T Consensus 418 dl~~~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~v~~ 497 (823)
T 3kg2_A 418 DLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKK 497 (823)
T ss_dssp HHHHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEEEEEEC
T ss_pred HHHHHHHHHcCCcEEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCCEEEEEEC
Confidence 999999999999999888762 46799999999999999999999999999999999999999999999998
Q ss_pred CCCC--CcceeecCCCHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCC--------------cccccchhhHhHHHHhhc
Q 006683 564 KQEE--STWMFTKPFTWEMWMVTAASFIYTMFIVWLLEHQSNPEFRGT--------------LKDQISNILWFAFSTIFF 627 (635)
Q Consensus 564 ~~~~--~~~~~l~pf~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~w~~~~~~~~ 627 (635)
+.+. +.+.|++||++.+|++++++++++++++|+++|+++.+|..+ ...++.+++|++++++++
T Consensus 498 ~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 577 (823)
T 3kg2_A 498 PQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQ 577 (823)
T ss_dssp CCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHHTTTTSCC
T ss_pred CCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHHHHHHHHHHHHHh
Confidence 8643 678999999999999999999999999999999876554321 123488999999999999
Q ss_pred cCCCCCCC
Q 006683 628 SHSEYPLN 635 (635)
Q Consensus 628 q~~~~~~~ 635 (635)
||.+..++
T Consensus 578 ~g~~~~p~ 585 (823)
T 3kg2_A 578 QGADISPR 585 (823)
T ss_dssp ------CC
T ss_pred cCCCcCCc
Confidence 99877653
No 2
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=3.2e-48 Score=410.60 Aligned_cols=370 Identities=20% Similarity=0.284 Sum_probs=317.1
Q ss_pred CCeEEEEEEeeCCC-----cCcHHHHHHHHHHHHhHhcCC--CCeEEEEEEecCCCCHHHHHHHHHHHhhc-CCeEEEEc
Q 006683 32 EEVTKIGAIVDANS-----QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAG 103 (635)
Q Consensus 32 ~~~i~IG~i~p~s~-----~~g~~~~~a~~~Av~~iN~~~--~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~~v~aiiG 103 (635)
.++|+||+++|+++ ..|.....|+++|+++||+++ +|++|+++++|+++++..++..+++|+.+ ++|.+|||
T Consensus 12 ~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~v~aviG 91 (433)
T 4f11_A 12 SPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNESLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLMVFG 91 (433)
T ss_dssp CCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHTTTTTTCEEEEEEEECTTCHHHHHHHHHHHHHHSCCCSEEEE
T ss_pred CCceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhccCCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEEC
Confidence 57899999999996 457889999999999999985 57999999999999999999999999975 59999999
Q ss_pred CCChhhHHHHHHhhccCCccEEeecCCCCCCCCCCC-CCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCC
Q 006683 104 METWEETAVVAEIASRVQVPILSFAAPAVTPLSMSR-RWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGD 182 (635)
Q Consensus 104 ~~~s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~-~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~ 182 (635)
|.+|..+.++++++..+++|+|+++++ ++.+++. .|||+||+.|++..++.++++++++++|++|++|+++++||
T Consensus 92 ~~~S~~~~a~~~~~~~~~ip~is~~~~--~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g-- 167 (433)
T 4f11_A 92 GVCPSVTSIIAESLQGWNLVQLSFAAT--TPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRF-- 167 (433)
T ss_dssp CCSHHHHHHHHHTHHHHTCEEEESSCC--CGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHH--
T ss_pred CCcchHHHHHHHHHHhcCceEEEcccC--CccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEecchhh--
Confidence 999999999999999999999999999 8999884 79999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCe
Q 006683 183 SGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDS 262 (635)
Q Consensus 183 ~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~ 262 (635)
....+.+++.+++.| ++|+..+.++. |+..++++++++++|+|++ .+...++..++++++++|+.++++
T Consensus 168 ~~~~~~~~~~~~~~g-~~v~~~~~~~~---------d~~~~l~~i~~~~~~vii~-~~~~~~~~~~~~~a~~~g~~~~~~ 236 (433)
T 4f11_A 168 SEVRNDLTGVLYGED-IEISDTESFSN---------DPCTSVKKLKGNDVRIILG-QFDQNMAAKVFCCAYEENMYGSKY 236 (433)
T ss_dssp HHHHHHHHHHSSSSS-CEEEEEEEESS---------CCHHHHHHHHHTTCCEEEE-ECCHHHHHHHHHHHHHTTCCSTTC
T ss_pred HHHHHHHHHHHHHcC-ceEEEEeccCc---------CHHHHHHHHhhCCCeEEEE-eCcHHHHHHHHHHHHHcCCCCCCe
Confidence 999999999999999 99999888763 2568899999999999999 999999999999999999999889
Q ss_pred EEEeeCchhhhhc-----------ccChhhhhhccceEEEEeecCCCC-------chhHHHHHHHHHhhccCCCCCCCCC
Q 006683 263 VWIVTNTVANALD-----------SLNTTVISSMEGTLGIKSYYSDDS-------SPYKEFSALFRRNFTSEYPEEDHFH 324 (635)
Q Consensus 263 ~~i~~~~~~~~~~-----------~~~~~~~~~~~g~~~~~~~~~~~~-------~~~~~f~~~~~~~~~~~~~~~~~~~ 324 (635)
+||.++.....+. .......+.++|++++.++.+... +..++|.++|+++.. +..
T Consensus 237 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~-------~~~ 309 (433)
T 4f11_A 237 QWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRS-------GVG 309 (433)
T ss_dssp EEEEESCSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHT-------TSC
T ss_pred EEEEcCcchHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcC-------CCC
Confidence 9999988332221 011233467899999887654321 347888888887621 346
Q ss_pred CcchhhhHhhHHHHHHHHHHhhccc-----------------CCChHHHHHHHHcCcccceeeeEEEeCCCCCCCCcEEE
Q 006683 325 PSIHALRAHDSIKIITEAIGRLNYN-----------------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRI 387 (635)
Q Consensus 325 ~~~~~~~~yDav~~~a~Al~~~~~~-----------------~~~~~~l~~~l~~~~f~g~~G~v~F~~~g~~~~~~~~i 387 (635)
++.+++++||||+++++||++++.+ +.+++.|+++|++++|+|++|+|+| ++|++. ..|.|
T Consensus 310 ~~~~a~~~YDAv~~la~Al~~a~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~~-~~~~I 387 (433)
T 4f11_A 310 PSKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGERM-GTIKF 387 (433)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEEE-CEEEE
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhccCCCCcccccccccHHHHHHHHHHHHhcEEEccceEEEE-ecCcee-eeEEE
Confidence 7788999999999999999998542 1147899999999999999999999 799997 89999
Q ss_pred EEeeCCceEEEEeecCCCCCccccCCCccCCCCCcccccCCCcccccCCCCcCcCCCc
Q 006683 388 VNVVGKKYKELDFWLPNFGFSKTSSKHNVGDISSNIAAEGFTGPVIWPGNLINRNPKG 445 (635)
Q Consensus 388 ~~~~~~~~~~vG~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Wp~~~~~~~P~~ 445 (635)
++++++++++||.|++... ++. +++ +.|.||++ .+|.+
T Consensus 388 ~~~~~g~~~~VG~~~~~~~---~l~-------~~~-------~~i~W~~~---~~P~D 425 (433)
T 4f11_A 388 TQFQDSREVKVGEYNAVAD---TLE-------IIN-------DTIRFQGS---EPPKD 425 (433)
T ss_dssp EEEETTEEEEEEEEETTTT---EEE-------ECT-------TTCCCSSS---SCCCS
T ss_pred EEEECCceEEEEEEECCCC---eEE-------EeC-------CceECCCC---CCCCC
Confidence 9999999999999986432 221 222 67999998 56765
No 3
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=3.4e-47 Score=395.75 Aligned_cols=353 Identities=16% Similarity=0.244 Sum_probs=300.6
Q ss_pred CCeEEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCC----CCeEEEEEEecCCC-CHHHHHHHHHHHhhcCCeEEEEcCCC
Q 006683 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS----RNHKLSLQIRDHNR-DPFQAATAAQELINKEKVKVIAGMET 106 (635)
Q Consensus 32 ~~~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~----~g~~l~~~~~D~~~-~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (635)
+++||||+++|+++. ....|+++|+++||+++ +|++|+++++|++| ++..+++++|+|+ +++|.+||||.+
T Consensus 3 ~~~i~IG~i~~~sg~---~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li-~~~V~aiiG~~~ 78 (389)
T 3o21_A 3 PNTISIGGLFMRNTV---QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQF-SRGVYAIFGFYD 78 (389)
T ss_dssp CSEEEEEEEECTTCH---HHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHH-TTTCSCEEECCC
T ss_pred CceeEEEEEeCCCCH---HHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHH-hcCcEEEEeCCC
Confidence 578999999999965 88999999999999986 47999999999987 9999999999999 569999999999
Q ss_pred hhhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchH
Q 006683 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (635)
Q Consensus 107 s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~ 186 (635)
|..+.++++++..++||+|+++. +.++ ..+|.||+.|+ ++.+++++++++||++|++|| |++|| ....
T Consensus 79 S~~~~a~~~i~~~~~iP~Is~s~----~~~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g--~~~~ 146 (389)
T 3o21_A 79 QMSMNTLTSFCGALHTSFVTPSF----PTDA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-DTERG--FSVL 146 (389)
T ss_dssp TTTHHHHHHHHHHHTCCEEECSC----CCSS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-CSTTC--SHHH
T ss_pred hhHHHHHHHHhccCCCceeecCC----CCcc--CCceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-cCcHH--HHHH
Confidence 99999999999999999998753 3333 34567777787 899999999999999999999 77999 9999
Q ss_pred HHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEe
Q 006683 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (635)
Q Consensus 187 ~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~ 266 (635)
+.+.+.+++.| +||+..+.++... ..|++.++++|+++++|+|++ .+...++..++++++++|+.++.|+||.
T Consensus 147 ~~~~~~~~~~g-~~v~~~~~~~~~~-----~~d~~~~l~~ik~~~~~vii~-~~~~~~~~~i~~qa~~~g~~~~~~~~i~ 219 (389)
T 3o21_A 147 QAIMEAAVQNN-WQVTARSVGNIKD-----VQEFRRIIEEMDRRQEKRYLI-DCEVERINTILEQVVILGKHSRGYHYML 219 (389)
T ss_dssp HHHHHHHHHTT-CEEEEEECTTCCC-----THHHHHHHHHHHTTTCCEEEE-ESCHHHHHHHHHHHHHHCSCSTTCEEEE
T ss_pred HHHHHHhhcCC-CeEEEEEecCCCC-----cHHHHHHHHHHHhCCCeEEEE-ECCHHHHHHHHHHHHHcCcccCCeEEEE
Confidence 99999999999 9999887665322 158999999999999999999 9999999999999999999998999999
Q ss_pred eCchhhhhcccChhhhhhccceEEEEeecCCCCchhHHHHHHHHHhhccCCCCCCCCCCcchhhhHhhHHHHHHHHHHhh
Q 006683 267 TNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (635)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~ 346 (635)
++.+....+. ........|++++..+.+. .|.+++|.++|+++|...++......+..+++++|||++++++|++++
T Consensus 220 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~ 296 (389)
T 3o21_A 220 ANLGFTDILL--ERVMHGGANITGFQIVNNE-NPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYL 296 (389)
T ss_dssp CCTTGGGCCC--HHHHHTTCEEEEEESCCTT-CHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcccccH--HHHhcCCcceEEEEEecCC-ChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHHHHHHHH
Confidence 8866544322 1222345677887766554 488999999999888655443222346788999999999999999988
Q ss_pred cc-------------c-------CCChHHHHHHHHcCcccceeeeEEEeCCCCCCCCcEEEEEeeCCceEEEEeecCCCC
Q 006683 347 NY-------------N-------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFG 406 (635)
Q Consensus 347 ~~-------------~-------~~~~~~l~~~l~~~~f~g~~G~v~F~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~~ 406 (635)
+. | +.++..|+++|++++|+|++|++.||++|++.+..|+|+++.++++++||.|++..+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g 376 (389)
T 3o21_A 297 RRQRVDVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYER 376 (389)
T ss_dssp HHTTCCCC-----CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTE
T ss_pred HhhCcccccCCCCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCceeeeEEcCCCC
Confidence 62 2 346789999999999999999999999999988899999999999999999999887
Q ss_pred Cccc
Q 006683 407 FSKT 410 (635)
Q Consensus 407 ~~~~ 410 (635)
+...
T Consensus 377 ~~~~ 380 (389)
T 3o21_A 377 FVPF 380 (389)
T ss_dssp EECC
T ss_pred cccc
Confidence 6543
No 4
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=5.4e-46 Score=385.38 Aligned_cols=351 Identities=17% Similarity=0.253 Sum_probs=279.2
Q ss_pred eEEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCC-CCHHHHHHHHHHHhhcCCeEEEEcCCChhhHHH
Q 006683 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHN-RDPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (635)
Q Consensus 34 ~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~-~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~ 112 (635)
+|+||+++|+++ .....|+++|+++||+. |++|+++++|++ +||..+.+++|+|+ +++|.+||||.+|..+.+
T Consensus 2 ~i~IG~i~~~sg---~~~~~~~~lAv~~iN~~--g~~l~~~~~d~~~~d~~~a~~~~~~li-~~~V~aiiG~~~S~~~~a 75 (376)
T 3hsy_A 2 SIQIGGLFPRGA---DQEYSAFRVGMVQFSTS--EFRLTPHIDNLEVANSFAVTNAFCSQF-SRGVYAIFGFYDKKSVNT 75 (376)
T ss_dssp EEEEEEEEETTC---HHHHHHHHHHHHHTCCS--SCEEEEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCCTTTHHH
T ss_pred ceeEEEEeCCCC---HHHHHHHHHHHHHHhcC--CeEEEEEEeecCCCChHHHHHHHHHHH-hcCcEEEECCCchhHHHH
Confidence 699999999985 46789999999999998 799999999965 59999999999999 568999999999999999
Q ss_pred HHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHH
Q 006683 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEA 192 (635)
Q Consensus 113 v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~ 192 (635)
++++++.++||+|+++++ . ...++|+||+.|+ ++.+++++++++||++|++|+ |++|| ....+.+++.
T Consensus 76 v~~~~~~~~ip~is~~~~--~----~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g--~~~~~~~~~~ 143 (376)
T 3hsy_A 76 ITSFCGTLHVSFITPSFP--T----DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRG--LSTLQAVLDS 143 (376)
T ss_dssp HHHHHHHHTCEEEECSCC--C----CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTC--SHHHHHHHHH
T ss_pred HHHHhccCcCceeecCCC--C----cccCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-eCchh--HHHHHHHHHH
Confidence 999999999999998755 3 2346789999887 899999999999999999999 78999 9999999999
Q ss_pred HhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEeeCchhh
Q 006683 193 LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVAN 272 (635)
Q Consensus 193 l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~ 272 (635)
+++.| ++|+....++...... ..|++.++++|+++++|+|++ .+...++..++++++++|+.++.|+||.++....
T Consensus 144 ~~~~g-~~v~~~~~~~~~~~~~--~~d~~~~l~~i~~~~~~vii~-~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~ 219 (376)
T 3hsy_A 144 AAEKK-WQVTAINVGNINNDKK--DETYRSLFQDLELKKERRVIL-DCERDKVNDIVDQVITIGKHVKGYHYIIANLGFT 219 (376)
T ss_dssp HHHHT-CEEEEEECTTCC----------------------CEEEE-ESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTT
T ss_pred hhhcC-CeEEEEEecccccccc--chhHHHHHHHHhhCCCeEEEE-ECCHHHHHHHHHHHHHcccCCCCcEEEEcCCCcc
Confidence 99999 9999876554321001 167999999999999999999 9999999999999999999988899999874322
Q ss_pred hhcccChhhhhhccceEEEEeecCCCCchhHHHHHHHHHhhccCCCCCCCCCCcchhhhHhhHHHHHHHHHHhhcc----
Q 006683 273 ALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY---- 348 (635)
Q Consensus 273 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~---- 348 (635)
..... +......+++++....+. .|..++|.++|+++|..+++......|+.+++++|||++++++|+++++.
T Consensus 220 ~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~~ 296 (376)
T 3hsy_A 220 DGDLL--KIQFGGANVSGFQIVDYD-DSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIE 296 (376)
T ss_dssp STTGG--GSCCTTCEEEEEESCCTT-SHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccchH--HhhcCCcCceEEEEecCC-chHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 21110 111122346667655444 48899999999988876554322235788999999999999999999763
Q ss_pred ---------c-------CCChHHHHHHHHcCcccceeeeEEEeCCCCCCCCcEEEEEeeCCceEEEEeecCCCCCcc
Q 006683 349 ---------N-------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSK 409 (635)
Q Consensus 349 ---------~-------~~~~~~l~~~l~~~~f~g~~G~v~F~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~~~~~ 409 (635)
| |.++..|+++|++++|+|++|+|+||++|++.+..++|+++.++++++||.|++..++..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~~~ 373 (376)
T 3hsy_A 297 ISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVV 373 (376)
T ss_dssp CSCCCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred cccCCCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCceEEEEEcCCCCcee
Confidence 1 245689999999999999999999999999988999999999999999999999877653
No 5
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=3.5e-45 Score=388.18 Aligned_cols=357 Identities=15% Similarity=0.176 Sum_probs=292.8
Q ss_pred CCeEEEEEEeeCCC---cCcHHHHHHHHHHHHhHhcCC-------CCeEEEEEEecCCCCHHHHHHHHHHHhh---cCCe
Q 006683 32 EEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS-------RNHKLSLQIRDHNRDPFQAATAAQELIN---KEKV 98 (635)
Q Consensus 32 ~~~i~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~-------~g~~l~~~~~D~~~~~~~a~~~~~~li~---~~~v 98 (635)
+++|+||+++|+++ ..|.....|+++|+++||+++ +|++|+++++|+++++. ++..+.+++- +++|
T Consensus 7 ~~~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~-a~~~~~~~~~~~~~~~v 85 (441)
T 1jdp_A 7 PQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALFSLVDRVAAARGAKP 85 (441)
T ss_dssp CCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH-HHHHHHHHHHHTTTCCC
T ss_pred CCceEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchh-HHHHHHHHHHhhccCCc
Confidence 57899999999984 345678899999999999976 37999999999999998 6665555431 3499
Q ss_pred EEEEcCCChhhHHHHHHhhccCCccEEeecCCCCCCCCCCC--CCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEc
Q 006683 99 KVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSR--RWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYED 176 (635)
Q Consensus 99 ~aiiG~~~s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~--~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~ 176 (635)
.+||||.+|..+.+++++++.+++|+|+++++ ++.++++ .|||+||+.|++..++.++++++++|||++|++|+++
T Consensus 86 ~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~--~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d 163 (441)
T 1jdp_A 86 DLILGPVCEYAAAPVARLASHWDLPMLSAGAL--AAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSD 163 (441)
T ss_dssp SEEECCCSHHHHHHHHHHHHHHTCCEEESCCC--SGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEEC
T ss_pred eEEECCCchhhHHHHHHHHhhcCCcEEcCCCC--chhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEEc
Confidence 99999999999999999999999999999999 8999884 7999999999999999999999999999999999999
Q ss_pred CCCCCCcc---hHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHH
Q 006683 177 NVYGGDSG---KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEAN 253 (635)
Q Consensus 177 ~~~g~~~~---~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~ 253 (635)
++|| +. ..+.+++.+++.| +||+....++... .++..++++++ +++|+|++ ++...++..+++++.
T Consensus 164 ~~~g--~~~~~~~~~~~~~~~~~g-~~v~~~~~~~~~~------~d~~~~l~~i~-~~~~vii~-~~~~~~~~~~~~~~~ 232 (441)
T 1jdp_A 164 DKLE--RNCYFTLEGVHEVFQEEG-LHTSIYSFDETKD------LDLEDIVRNIQ-ASERVVIM-CASSDTIRSIMLVAH 232 (441)
T ss_dssp CSSS--CHHHHHHHHHHHHHHHHT-CEEEEEEECTTSC------CCHHHHHHHHH-HHCSEEEE-ESCHHHHHHHHHHHH
T ss_pred CCcc--cchHHHHHHHHHHHHhcC-cEEEEEEecCCcc------cCHHHHHHHhh-cCCcEEEE-ecCHHHHHHHHHHHH
Confidence 9999 88 8999999999999 9999887665433 45889999999 89999999 999999999999999
Q ss_pred HcCCCCCCeEEEeeC----------chhhhhcccChhhhhhccceEEEEeecCCCCchhHHHHHHHHHhhccCCCCCCCC
Q 006683 254 RMGLVGKDSVWIVTN----------TVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHF 323 (635)
Q Consensus 254 ~~g~~~~~~~~i~~~----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 323 (635)
++|+.++.|+||.++ .|... ...........+++.++..+... .|.+++|.++|++++....+.. ..
T Consensus 233 ~~gl~~~~~v~i~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~g~~~~~~~-~p~~~~F~~~~~~~~~~~~~~~-~~ 309 (441)
T 1jdp_A 233 RHGMTSGDYAFFNIELFNSSSYGDGSWKRG-DKHDFEAKQAYSSLQTVTLLRTV-KPEFEKFSMEVKSSVEKQGLNM-ED 309 (441)
T ss_dssp HTTCTTTTCEEEEECSSCCCSTTTCTTCCS-STTHHHHHHHGGGEEEEEECCCC-CHHHHHHHHHHHHHHHTTTCCC-CS
T ss_pred HcCCCCCCEEEEEEeccccccccCCCCccC-CcccHHHHHHHHhheEEeecCCC-CchHHHHHHHHHHHHhhCCCCc-cc
Confidence 999998889999887 33211 00001011234556666655443 4889999999988743210110 11
Q ss_pred CCcchhhhHhhHHHHHHHHHHhhcc---cCCChHHHHHHHHcCcccceeeeEEEeCCCCCCCCcEEEEEee---CCceEE
Q 006683 324 HPSIHALRAHDSIKIITEAIGRLNY---NISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV---GKKYKE 397 (635)
Q Consensus 324 ~~~~~~~~~yDav~~~a~Al~~~~~---~~~~~~~l~~~l~~~~f~g~~G~v~F~~~g~~~~~~~~i~~~~---~~~~~~ 397 (635)
.++.+++++||||+++++||+++.. ++.++++|+++|++++|+|++|+++||++|++. ..|+|++++ ++.+++
T Consensus 310 ~~~~~~~~~YdAv~~~A~Al~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~~-~~~~I~~~~~~~~g~~~~ 388 (441)
T 1jdp_A 310 YVNMFVEGFHDAILLYVLALHEVLRAGYSKKDGGKIIQQTWNRTFEGIAGQVSIDANGDRY-GDFSVIAMTDVEAGTQEV 388 (441)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHSSEEEEETTEEEEECTTSBBC-CEEEEEEEEETTTTEEEE
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCCeeECCccceEECCCCCcc-ccEEEEecccCCCCceEE
Confidence 2456788999999999999999853 236889999999999999999999999999986 899999995 467999
Q ss_pred EEeecCCCC
Q 006683 398 LDFWLPNFG 406 (635)
Q Consensus 398 vG~w~~~~~ 406 (635)
||.|++..+
T Consensus 389 VG~~~~~~~ 397 (441)
T 1jdp_A 389 IGDYFGKEG 397 (441)
T ss_dssp EEEEETTTT
T ss_pred EEEEcCCCC
Confidence 999998653
No 6
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=2e-45 Score=391.55 Aligned_cols=355 Identities=16% Similarity=0.244 Sum_probs=296.7
Q ss_pred CCeEEEEEEeeCC------------Cc-CcHHHHHHHHHHHHhHhcCC---CCeEEEEEEecCCCCHHHHHHHHHHHhhc
Q 006683 32 EEVTKIGAIVDAN------------SQ-MGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELINK 95 (635)
Q Consensus 32 ~~~i~IG~i~p~s------------~~-~g~~~~~a~~~Av~~iN~~~---~g~~l~~~~~D~~~~~~~a~~~~~~li~~ 95 (635)
+++|.||+++|++ .. .|.+...|+++|+|+||+++ ||++|+++++|+++++..|++.+.++++.
T Consensus 11 ~GDi~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~~~~~ll~~ 90 (479)
T 3sm9_A 11 EGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFVRA 90 (479)
T ss_dssp CCSEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCChHHHHHHHHHHHhC
Confidence 5789999999996 12 67889999999999999998 69999999999999999999999999964
Q ss_pred ------------------------CCeEEEEcCCChhhHHHHHHhhccCCccEEeecCCCCCCCCCCC-CCceEEEEecC
Q 006683 96 ------------------------EKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSR-RWPYLIRMASN 150 (635)
Q Consensus 96 ------------------------~~v~aiiG~~~s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~-~~p~~~r~~p~ 150 (635)
++|.+||||.+|..+.+++++++.+++|+|+++++ ++.|+++ +|||+||+.|+
T Consensus 91 ~~~~~~~pny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~--~~~lsd~~~~p~~fr~~ps 168 (479)
T 3sm9_A 91 SLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYAST--SAKLSDKSRYDYFARTVPP 168 (479)
T ss_dssp CC-----------------------CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCC--CGGGGCTTTTTTEEESSCC
T ss_pred CCccCCCCCCccCCCCccccccCCCceEEEECCCCcHHHHHHHHHHhcCCccEECCCcC--CccccCcccCCCeEEeCCc
Confidence 47999999999999999999999999999999999 9999985 79999999999
Q ss_pred cHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHH-Hhhhh
Q 006683 151 DSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGEL-KKVQD 229 (635)
Q Consensus 151 ~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l-~~l~~ 229 (635)
+..++.++++++++|||+||++|+++++|| +...+.+++++++.| +||++.+.++... ...++..++ +.+++
T Consensus 169 d~~~~~a~~~ll~~fgw~~V~ii~~dd~~G--~~~~~~~~~~~~~~G-i~v~~~~~i~~~~----~~~d~~~~l~~~i~~ 241 (479)
T 3sm9_A 169 DFYQAKAMAEILRFFNWTYVSTVASEGDYG--ETGIEAFEQEARLRN-ISIATAEKVGRSN----IRKSYDSVIRELLQK 241 (479)
T ss_dssp THHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHHHHHHHHHTTT-CEEEEEEEECC------CHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEecchhh--HHHHHHHHHHHHHCC-ceEEEEEEcCCCC----ChHHHHHHHHHHHhc
Confidence 999999999999999999999999999999 999999999999999 9999998887643 126788888 67888
Q ss_pred cCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEeeCchhhhhcccChhhhhhccceEEEEeecCCCCchhHHHHHHH
Q 006683 230 KQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALF 309 (635)
Q Consensus 230 ~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~ 309 (635)
+++++||+ ++...++..+++++.++|+. ++||+++.|........ .....+.|+++++.+..+. |++++|+..+
T Consensus 242 s~a~vIi~-~~~~~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~~~-~~~~~~~G~l~~~~~~~~i-pgf~~fl~~~ 315 (479)
T 3sm9_A 242 PNARVVVL-FMRSDDSRELIAAASRANAS---FTWVASDGWGAQESIIK-GSEHVAYGAITLELASQPV-RQFDRYFQSL 315 (479)
T ss_dssp TTCCEEEE-ECCHHHHHHHHHHHHHTTCC---CEEEECTTTTTCHHHHT-TCTTTTTTCEEEEECCCCC-HHHHHHHHTC
T ss_pred CCCeEEEE-EcChHHHHHHHHHHHHhCCE---EEEEEechhhcCccccc-cccccCceEEEEEeccCCC-cchhhHhhcc
Confidence 89999999 99999999999999999997 59999999865321111 1124678999999887766 7888887653
Q ss_pred H---------------HhhccCCCCC----CCCCC-----------cchhhhHhhHHHHHHHHHHhhcc--c--------
Q 006683 310 R---------------RNFTSEYPEE----DHFHP-----------SIHALRAHDSIKIITEAIGRLNY--N-------- 349 (635)
Q Consensus 310 ~---------------~~~~~~~~~~----~~~~~-----------~~~~~~~yDav~~~a~Al~~~~~--~-------- 349 (635)
+ ..|.+..... ..|.. ....+..|+||+++|+|||++.. |
T Consensus 316 ~p~~~p~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~~~~c~ 395 (479)
T 3sm9_A 316 NPYNNHRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPNTTKLCD 395 (479)
T ss_dssp CTTTCTTCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTCSSCCH
T ss_pred CcCcCCCCHHHHHHHHHHcCCCCCCCcccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcCCCCcCCC
Confidence 2 2232221110 01221 12346899999999999999853 1
Q ss_pred ---CCChHHHH-HHHHcCcccce------ee-eEEEeCCCCCCCCcEEEEEeeC----CceEEEEeec
Q 006683 350 ---ISSPEMLL-RQMLSSDFSGL------SG-KIRFKDGELLNADTLRIVNVVG----KKYKELDFWL 402 (635)
Q Consensus 350 ---~~~~~~l~-~~l~~~~f~g~------~G-~v~F~~~g~~~~~~~~i~~~~~----~~~~~vG~w~ 402 (635)
..++++|+ ++|++++|.+. .| .|.||++|++. ..|+|++++. ..+++||.|+
T Consensus 396 ~~~~~~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~~-~~YdI~n~~~~~~~~~~~~VG~~~ 462 (479)
T 3sm9_A 396 AMKILDGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDGM-GRYNVFNFQNVGGKYSYLKVGHWA 462 (479)
T ss_dssp HHHSCCHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBCC-CCEEEEEEEESSSCEEEEEEEEES
T ss_pred CCCCcChHHHHHHHhcceeeccccCccccCCCeEEECCCCCcc-cceEEEEEEECCCcEEEEEEEEEe
Confidence 24788999 99999999998 56 99999999996 8999999963 3568999997
No 7
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=1.3e-45 Score=391.08 Aligned_cols=376 Identities=14% Similarity=0.183 Sum_probs=306.3
Q ss_pred CeEEEEEEeeCCC---cCcHHHHH-HHHHHHHhHhcCC---CCeEEEEEEecC-----CCCHHHHHHHHHHHhhcCCeEE
Q 006683 33 EVTKIGAIVDANS---QMGKQAIT-AMKIAVQNFNSDS---RNHKLSLQIRDH-----NRDPFQAATAAQELINKEKVKV 100 (635)
Q Consensus 33 ~~i~IG~i~p~s~---~~g~~~~~-a~~~Av~~iN~~~---~g~~l~~~~~D~-----~~~~~~a~~~~~~li~~~~v~a 100 (635)
++|+||+++|+++ ..|..... |+++|+++||+++ +|++|+++++|+ +|++..++..+.+++.+++|.+
T Consensus 1 g~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~a 80 (435)
T 1dp4_A 1 SDLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAV 80 (435)
T ss_dssp CEEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSE
T ss_pred CceEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceE
Confidence 4799999999984 55777777 9999999999997 589999999999 4556688888888887889999
Q ss_pred EEcCCChhhHHHHHHhhccCCccEEeecCCCCCCCCCCC-CCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEE------
Q 006683 101 IAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSR-RWPYLIRMASNDSEQMKCIADLARKYNWRRVAAI------ 173 (635)
Q Consensus 101 iiG~~~s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~-~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii------ 173 (635)
||||.+|..+.+++++++.+++|+|+++++ ++.++++ .|||+||+.|++..++.++++++++++|++|++|
T Consensus 81 viG~~~S~~~~av~~~~~~~~ip~is~~~~--~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~ 158 (435)
T 1dp4_A 81 FLGPGCVYSAAPVGRFTAHWRVPLLTAGAP--ALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRL 158 (435)
T ss_dssp EECCCSHHHHHHHHHHHHHHTCCEEESCCC--CGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCS
T ss_pred EECCCChHHHHHHHHHHHhcCCcEEccccc--ccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEccCC
Confidence 999999999999999999999999999999 8999884 6999999999999999999999999999999999
Q ss_pred EEcCCCCCCcchHHHHHHHHhc-cCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHH
Q 006683 174 YEDNVYGGDSGKLALLAEALQN-VSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEA 252 (635)
Q Consensus 174 ~~~~~~g~~~~~~~~~~~~l~~-~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a 252 (635)
+++++|| .. .+.+.+.+.+ .| +||+....++.+. .++..+++++++ ++|+|++ .+...++..+++++
T Consensus 159 ~~~~~~g--~~-~~~~~~~~~~~~g-~~v~~~~~~~~~~------~d~~~~l~~i~~-~~~viv~-~~~~~~~~~~~~~a 226 (435)
T 1dp4_A 159 GDDRPCF--FI-VEGLYMRVRERLN-ITVNHQEFVEGDP------DHYPKLLRAVRR-KGRVIYI-CSSPDAFRNLMLLA 226 (435)
T ss_dssp SSCCHHH--HH-HHHHHHHHHHHHC-CEEEEEEECTTCG------GGHHHHHHHHHH-HCSEEEE-ESCHHHHHHHHHHH
T ss_pred CCcchHH--HH-HHHHHHHHHhhcC-eEEEEEEEecCch------hhHHHHHHHHHh-hCceEEE-ecChHHHHHHHHHH
Confidence 5555565 44 4567777777 89 9999887654332 679999999998 9999999 99999999999999
Q ss_pred HHcCCCCCCeEEEeeCchhhhhc---------------ccChhhhhhccceEEEEeecCCCCchhHHHHHHHHHhhccCC
Q 006683 253 NRMGLVGKDSVWIVTNTVANALD---------------SLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEY 317 (635)
Q Consensus 253 ~~~g~~~~~~~~i~~~~~~~~~~---------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 317 (635)
.++|+.++.++||.++.+..... .......+..+|++.+.+..+. ++..++|.++|++.+...+
T Consensus 227 ~~~g~~~~~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~ 305 (435)
T 1dp4_A 227 LNAGLTGEDYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPD-NPEYLEFLKQLKLLADKKF 305 (435)
T ss_dssp HHTTCCTTTCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCC-SHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCEEEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCCC-ChhHHHHHHHHHHHhcCCC
Confidence 99999887789999987654210 0011223467888887775443 4788999999987764311
Q ss_pred CCCC--CCCCcchhhhHhhHHHHHHHHHHhhcc---cCCChHHHHHHHHcCcccceeeeEEEeCCCCCCCCcEEEEEe--
Q 006683 318 PEED--HFHPSIHALRAHDSIKIITEAIGRLNY---NISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNV-- 390 (635)
Q Consensus 318 ~~~~--~~~~~~~~~~~yDav~~~a~Al~~~~~---~~~~~~~l~~~l~~~~f~g~~G~v~F~~~g~~~~~~~~i~~~-- 390 (635)
.|. ...++.+++++||||+++++||+++.. .+.++++|+++|++++|+|++|+++||++|++. ..|.|+++
T Consensus 306 -~~~~~~~~~~~~~~~~ydav~~~a~Al~~~~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~fd~~g~~~-~~~~i~~~~~ 383 (435)
T 1dp4_A 306 -NFTVEDGLKNIIPASFHDGLLLYVQAVTETLAQGGTVTDGENITQRMWNRSFQGVTGYLKIDRNGDRD-TDFSLWDMDP 383 (435)
T ss_dssp -CCCCCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCTTCHHHHHHTTTTEEEEETTEEEEECTTSBBC-CCEEEEEECT
T ss_pred -CcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhCceeeccceeEEECCCCCcc-ceeEEEEecC
Confidence 111 112566889999999999999999832 136899999999999999999999999999997 79999999
Q ss_pred eCCceEEEEeecCCCCCccccCCCccCCCC-CcccccCCCcccccCCCCcCcCCCc
Q 006683 391 VGKKYKELDFWLPNFGFSKTSSKHNVGDIS-SNIAAEGFTGPVIWPGNLINRNPKG 445 (635)
Q Consensus 391 ~~~~~~~vG~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~Wp~~~~~~~P~~ 445 (635)
.++.+++||.|++..+ ++. + ++ +.|+||++ ++|++
T Consensus 384 ~~g~~~~vg~~~~~~~---~l~-------~~~~-------~~i~W~~~---~~P~~ 419 (435)
T 1dp4_A 384 ETGAFRVVLNYNGTSQ---ELM-------AVSE-------HKLYWPLG---YPPPD 419 (435)
T ss_dssp TTCCEEEEEEECTTTC---CEE-------ESTT-------CCCCCTTS---SCCCS
T ss_pred CCCcEEEEEEecCCCc---eEE-------EcCC-------ceeeCCCC---CCCCC
Confidence 5678999999998653 121 1 11 67999987 56654
No 8
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=3.3e-45 Score=380.76 Aligned_cols=348 Identities=16% Similarity=0.249 Sum_probs=295.9
Q ss_pred CCCeEEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCC-CHHHHHHHHHHHhhcCCeEEEEcCCChhh
Q 006683 31 IEEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR-DPFQAATAAQELINKEKVKVIAGMETWEE 109 (635)
Q Consensus 31 ~~~~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~-~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (635)
.+++||||+++|+++. ....|+++|++++|+++ +|+++++|+++ ++..+++++|+|+ +++|.+||||.+|..
T Consensus 7 ~~~~ikIG~~~~~sg~---~~~~a~~lAv~~iN~~g---~l~~~~~D~~~~d~~~a~~~~~~l~-~~~V~aiiG~~~S~~ 79 (384)
T 3saj_A 7 MPNNIQIGGLFPNQQS---QEHAAFRFALSQLTEPP---KLLPQIDIVNISDSFEMTYRFCSQF-SKGVYAIFGFYERRT 79 (384)
T ss_dssp CCSEEEEEEEESCSSS---HHHHHHHHHHTTCCSSS---EEEEEEEECCTTCHHHHHHHHHHHH-HTTCSCEEECCCHHH
T ss_pred CCcceeEEEEecCCCH---HHHHHHHHHHHHHhcCC---ccceeeEecccCchhhHHHHHHHHH-hcCeEEEECCCCHHH
Confidence 3688999999999975 78899999999999985 99999999886 9999999999999 569999999999999
Q ss_pred HHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHH
Q 006683 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALL 189 (635)
Q Consensus 110 ~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~ 189 (635)
+.++++++..+++|+|+++ ++.++ ..+|.||+.|+ ++.+++++++++||++|++|+ +++|| ....+.+
T Consensus 80 ~~a~~~~~~~~~iP~is~~----~~~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d~~~g--~~~~~~~ 147 (384)
T 3saj_A 80 VNMLTSFCGALHVCFITPS----FPVDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-DADRG--LSVLQRV 147 (384)
T ss_dssp HHHHHHHHHHHTCCEEECS----CCCSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTC--SHHHHHH
T ss_pred HHHHHHHhccCCCCeEecc----ccCcC--ccCceEEeccc---HHHHHHHHHHHCCCcEEEEEE-eCchh--HHHHHHH
Confidence 9999999999999999984 34443 34677888887 899999999999999999999 66899 9999999
Q ss_pred HHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEeeCc
Q 006683 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (635)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~ 269 (635)
++.+++.| +||+..+.++.+. .|++.++++++++++|+|++ .+...++..++++++++|+.++.|+||.++.
T Consensus 148 ~~~~~~~g-~~v~~~~~~~~~~------~d~~~~l~~ik~~~~~vii~-~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~ 219 (384)
T 3saj_A 148 LDTAAEKN-WQVTAVNILTTTE------EGYRMLFQDLEKKKERLVVV-DCESERLNAILGQIVKLEKNGIGYHYILANL 219 (384)
T ss_dssp HHHHHHHT-CEEEEEEGGGCCH------HHHHHTTTTCCSCSEEEEEE-ECCGGGHHHHHHHHHHTCCTTCEEEEEESSS
T ss_pred HHHhhhcC-ceEEEEEeccCCc------hhHHHHHHHHhccCCcEEEE-EcCHHHHHHHHHHHHHcCCCCCCcEEEEECC
Confidence 99999999 9999887544433 78999999999999999999 9999999999999999999998899999875
Q ss_pred hhhhhcccChhhhhhccceEEEEeecCCCCchhHHHHHHHHHhhccCCCCCCCCCCcchhhhHhhHHHHHHHHHHhhcc-
Q 006683 270 VANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY- 348 (635)
Q Consensus 270 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~- 348 (635)
+...... ........|++++.++.+. .|..++|.++|+++|..+++......++.+++++|||++++++|+++++.
T Consensus 220 ~~~~~~~--~~~~~~~~~v~~~~~~~~~-~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~Al~~~~~~ 296 (384)
T 3saj_A 220 GFMDIDL--NKFKESGANVTGFQLVNYT-DTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQ 296 (384)
T ss_dssp CGGGSCH--HHHHHTTCCEEEEECCCTT-SHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccccH--HHhhCCCcceEEEEeecCC-ChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 4332211 1122344568888776554 47899999999999876654322334677899999999999999998864
Q ss_pred ------------c-------CCChHHHHHHHHcCcccceeeeEEEeCCCCCCCCcEEEEEeeCCceEEEEeecCCCCCc
Q 006683 349 ------------N-------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFS 408 (635)
Q Consensus 349 ------------~-------~~~~~~l~~~l~~~~f~g~~G~v~F~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~~~~ 408 (635)
| +.++..|+++|++++|+|++|+++||++|++.+..|+|++++++++++||.|++..++.
T Consensus 297 ~~~~~~~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~W~~~~gl~ 375 (384)
T 3saj_A 297 RIDISRRGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDDKFV 375 (384)
T ss_dssp TCCCCCCCSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTEEE
T ss_pred ccceecCCCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCcceeEEEcCCCCcc
Confidence 1 26899999999999999999999999999998899999999999999999999876654
No 9
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=2.2e-45 Score=383.55 Aligned_cols=357 Identities=15% Similarity=0.276 Sum_probs=292.5
Q ss_pred CeEEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCC---CCeEEEEEEecCCCCH-HHHHHHHHHHhhcCCeEEEEcCCChh
Q 006683 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDP-FQAATAAQELINKEKVKVIAGMETWE 108 (635)
Q Consensus 33 ~~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~---~g~~l~~~~~D~~~~~-~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (635)
++||||+++|+++..|.....|+++|+++||+++ ||++|+++++|+++++ ..+...+|+++ +++|.+||||.+|.
T Consensus 3 ~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~-~~~V~aiiG~~~S~ 81 (393)
T 3om0_A 3 SSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQIL-PKGVVSVLGPSSSP 81 (393)
T ss_dssp CEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHG-GGCCSCEECCSSCH
T ss_pred cceeEEEEecCCCcccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHHHHHHHH-hcCcEEEECCCCch
Confidence 5799999999999899999999999999999987 5799999999999976 45667889998 68999999999995
Q ss_pred h-HHHHHHhhccCCccEEeecCCCCCCCCCCCCCceE--EEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcch
Q 006683 109 E-TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYL--IRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (635)
Q Consensus 109 ~-~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~--~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~ 185 (635)
. +.+++++++.+++|+|+++++ +. ....+|++ ||+.|++..++.+++++++++||++|++|+++++|| +.+
T Consensus 82 ~~~~a~~~i~~~~~ip~is~~a~--~~--~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g--~~l 155 (393)
T 3om0_A 82 ASASTVSHICGEKEIPHIKVGPE--ET--PRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECL--LRL 155 (393)
T ss_dssp HHHHHHHHHHHHHTCCEEECSCC--CC--C----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHH--HHT
T ss_pred hHHHHHHHHHhccCCCeEeccCC--cC--ccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCchHH--HHH
Confidence 4 579999999999999999877 41 23568888 999999999999999999999999999999999998 776
Q ss_pred HHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEE
Q 006683 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWI 265 (635)
Q Consensus 186 ~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i 265 (635)
.+.+ +.+.+.| ++|+... ++ .. .|++.++++|+++++|+|++ .+...++..++++++++|+.++.|+||
T Consensus 156 ~~~~-~~~~~~g-~~v~~~~-~~-~~------~d~~~~l~~i~~~~~~vii~-~~~~~~~~~~~~~a~~~g~~~~~~~~i 224 (393)
T 3om0_A 156 EELV-RGFLISK-ETLSVRM-LD-DS------RDPTPLLKEIRDDKVSTIII-DANASISHLVLRKASELGMTSAFYKYI 224 (393)
T ss_dssp HHHH-HHHHHSS-SCEEEEE-CC--C------CCSHHHHHHHHHHTCSEEEE-ESCHHHHHHHHHHHHHTTTTSTTCEEE
T ss_pred HHHH-HhhhccC-CeEEEEe-cC-CC------CCHHHHHHHHHhcCCeEEEE-ECCHHHHHHHHHHHHHcCcccCCeEEE
Confidence 5555 4567788 8887654 33 22 46889999999999999999 999999999999999999999889999
Q ss_pred eeCchhhhhcccChhhhhhccceEEEEeecCCCCchhHHHHHHHHHhhccCCCCCCCCCCcchhhhHhhHHHHHHHHHHh
Q 006683 266 VTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGR 345 (635)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~ 345 (635)
.++......+.. .......|++++....+. .|.+++|.++|+++|...+.......|+.+++++|||++++++|+++
T Consensus 225 ~~~~~~~~~~l~--~~~~~~~~~~g~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~la~Al~~ 301 (393)
T 3om0_A 225 LTTMDFPILHLD--GIVEDSSNILGFSMFNTS-HPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRE 301 (393)
T ss_dssp ECCTTGGGCCCT--TTCCSSCSEEEEECCCTT-STTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred Eecccccccchh--hhhccCCcEEEEEEecCC-ccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHHHHHHHH
Confidence 887654332211 112345678888766554 47899999999999864321111124677899999999999999998
Q ss_pred hccc---------------CCChHHHHHHHHcCcccceeeeEEEeCCCCCCCCcEEEEEeeCCceEEEEeecCCCCCccc
Q 006683 346 LNYN---------------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFGFSKT 410 (635)
Q Consensus 346 ~~~~---------------~~~~~~l~~~l~~~~f~g~~G~v~F~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~~~~~~ 410 (635)
++.. +.++..|+++|++++|+|++|+++||++|++.+..|+|++++++++++||+|++..++..+
T Consensus 302 ~~~~~~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~gl~~~ 381 (393)
T 3om0_A 302 LNRSQEIGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREIGVWYSNRTLAMN 381 (393)
T ss_dssp HTTTSCCCCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEEEEEEEEECC------
T ss_pred HhhcccCcCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCceEeeeEcCCCCcccc
Confidence 8631 3689999999999999999999999999999889999999999999999999998776543
No 10
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=2.4e-44 Score=391.64 Aligned_cols=376 Identities=16% Similarity=0.261 Sum_probs=308.5
Q ss_pred CCeEEEEEEeeCCC-------------cCcHHHHHHHHHHHHhHhcCC---CCeEEEEEEecCCCCHHHHHHHHHHHhh-
Q 006683 32 EEVTKIGAIVDANS-------------QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELIN- 94 (635)
Q Consensus 32 ~~~i~IG~i~p~s~-------------~~g~~~~~a~~~Av~~iN~~~---~g~~l~~~~~D~~~~~~~a~~~~~~li~- 94 (635)
+++|+||+++|+++ ..|.....|+++|+|+||+++ ||++|+++++|+++++..|++.+.++++
T Consensus 12 ~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~~~l~~ 91 (555)
T 2e4u_A 12 EGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFVRA 91 (555)
T ss_dssp CCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCChHHHHHHHHHHHhC
Confidence 57899999999983 257788899999999999987 6899999999999999999999888774
Q ss_pred -----------------------cCCeEEEEcCCChhhHHHHHHhhccCCccEEeecCCCCCCCCCCC-CCceEEEEecC
Q 006683 95 -----------------------KEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSR-RWPYLIRMASN 150 (635)
Q Consensus 95 -----------------------~~~v~aiiG~~~s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~-~~p~~~r~~p~ 150 (635)
+++|.+||||.+|..+.+++++++.+++|+|+++++ ++.|+++ +|||+||+.|+
T Consensus 92 ~~~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~--~~~lsd~~~~p~~fr~~p~ 169 (555)
T 2e4u_A 92 SLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYAST--SAKLSDKSRYDYFARTVPP 169 (555)
T ss_dssp TC--------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCC--CGGGGCTTTCTTEEESSCC
T ss_pred cCcccCCCCcccCCCccccccccCCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcC--CCccCCcccCCCceeeCCC
Confidence 578999999999999999999999999999999999 8999984 79999999999
Q ss_pred cHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhh-
Q 006683 151 DSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD- 229 (635)
Q Consensus 151 ~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~- 229 (635)
+..++.++++++++|||++|++|+++++|| +...+.+++.+++.| +||++.+.++... ...++..+++++++
T Consensus 170 d~~~~~a~~~ll~~fgw~~V~ii~~d~~~g--~~~~~~~~~~~~~~g-i~v~~~~~~~~~~----~~~~~~~~l~~i~~~ 242 (555)
T 2e4u_A 170 DFYQAKAMAEILRFFNWTYVSTVASEGDYG--ETGIEAFEQEARLRN-ICIATAEKVGRSN----IRKSYDSVIRELLQK 242 (555)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEESSTTH--HHHHHHHHHHHHTTT-CEEEEEEEECTTC----CHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHcCCeEEEEEEeeChHH--HHHHHHHHHHHHHCC-ccEEEEEEeCCCC----ChHHHHHHHHHHhcc
Confidence 999999999999999999999999999999 999999999999999 9999988887532 12689999999975
Q ss_pred cCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEeeCchhhhhcccChhhhhhccceEEEEeecCCCCchhHHHHH--
Q 006683 230 KQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSA-- 307 (635)
Q Consensus 230 ~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~-- 307 (635)
+++|+||+ .+...++..+++++.++|+ + ++||+++.|........ .....++|++++..+..+. |++++|+.
T Consensus 243 s~a~vIi~-~~~~~~~~~~~~~~~~~g~-~--~~~i~s~~~~~~~~~~~-~~~~~~~G~l~~~~~~~~i-pgf~~f~~~~ 316 (555)
T 2e4u_A 243 PNARVVVL-FMRSDDSRELIAAANRVNA-S--FTWVASDGWGAQESIVK-GSEHVAYGAITLELASHPV-RQFDRYFQSL 316 (555)
T ss_dssp TTCCEEEE-ECCHHHHHHHHHHHHHTTC-C--CEEEECTTTTTCGGGTT-TCHHHHTTCEEEEECCCCC-HHHHHHHHTC
T ss_pred CCCCEEEE-EcCHHHHHHHHHHHHHhcC-C--eEEEEeccccccchhhc-cchhhcceEEEEEeccCCC-CcHHHHHhhC
Confidence 69999999 9999999999999999998 3 79999988865322211 1134678999988765443 45555443
Q ss_pred -------------HHHHhhccCCC-------CCCCC--------CCcchhhhHhhHHHHHHHHHHhhccc----------
Q 006683 308 -------------LFRRNFTSEYP-------EEDHF--------HPSIHALRAHDSIKIITEAIGRLNYN---------- 349 (635)
Q Consensus 308 -------------~~~~~~~~~~~-------~~~~~--------~~~~~~~~~yDav~~~a~Al~~~~~~---------- 349 (635)
.|++.|....+ .|.+. .+..+++.+||||+++|+||+++..+
T Consensus 317 ~p~~~p~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~~~~~~~ 396 (555)
T 2e4u_A 317 NPYNNHRNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQTTKLCD 396 (555)
T ss_dssp CTTTCTTCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTTCSSCCG
T ss_pred CcccCCCCHHHHHHHHHHcCCCCCCCCccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCCCCcccc
Confidence 34444543221 11110 14457889999999999999998641
Q ss_pred ---CCChHHHHH-HHHcCccc------ceeee-EEEeCCCCCCCCcEEEEEee--CC--ceEEEEeecCCCCCccccCCC
Q 006683 350 ---ISSPEMLLR-QMLSSDFS------GLSGK-IRFKDGELLNADTLRIVNVV--GK--KYKELDFWLPNFGFSKTSSKH 414 (635)
Q Consensus 350 ---~~~~~~l~~-~l~~~~f~------g~~G~-v~F~~~g~~~~~~~~i~~~~--~~--~~~~vG~w~~~~~~~~~~~~~ 414 (635)
..++++|++ +|++++|+ |.+|. |.||++|++. ..|+|++++ ++ .+++||.|++ ++.
T Consensus 397 ~~~~~~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~~-~~y~I~~~~~~~g~~~~~~VG~~~~------~l~-- 467 (555)
T 2e4u_A 397 AMKILDGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDGM-GRYNVFNLQQTGGKYSYLKVGHWAE------TLS-- 467 (555)
T ss_dssp GGTSCCHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCCC-CCEEEEEEECTTSSCEEEEEEEESS------SEE--
T ss_pred ccCCCCcccccHHhHhceeecccccccCCCCCeEEEcCCCCcc-ceEEEEEEEecCCcEEEEEEEEecc------eEE--
Confidence 156889999 99999999 99996 9999999986 899999995 33 6899999984 121
Q ss_pred ccCCCCCcccccCCCcccccCCCCcCcCCCcc
Q 006683 415 NVGDISSNIAAEGFTGPVIWPGNLINRNPKGW 446 (635)
Q Consensus 415 ~~~~~~~~~~~~~~~~~i~Wp~~~~~~~P~~~ 446 (635)
+++ +.|.|++ . ++|++-
T Consensus 468 -----i~~-------~~I~W~~--~-~~P~S~ 484 (555)
T 2e4u_A 468 -----LDV-------DSIHWSR--N-SVPTSQ 484 (555)
T ss_dssp -----CCG-------GGCCCTT--S-SCCCCC
T ss_pred -----Eec-------cccccCC--C-CCccee
Confidence 232 6799997 3 788763
No 11
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=1.4e-44 Score=377.97 Aligned_cols=357 Identities=19% Similarity=0.275 Sum_probs=300.6
Q ss_pred CCeEEEEEEeeCCC-cCcHHHHHHHHHHHHhHhcCC---CCeEEEEEEecCC-CCHHHHHHHHHHHhhcCCeEEEEcCCC
Q 006683 32 EEVTKIGAIVDANS-QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHN-RDPFQAATAAQELINKEKVKVIAGMET 106 (635)
Q Consensus 32 ~~~i~IG~i~p~s~-~~g~~~~~a~~~Av~~iN~~~---~g~~l~~~~~D~~-~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (635)
+++||||+++|+++ ..|.....|+++|+++||+++ |+++|++++.|.. .|+..+...+|+++ +++|.+||||.+
T Consensus 2 ~~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~-~~~V~aiiG~~~ 80 (395)
T 3h6g_A 2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQL-SLGVAAIFGPSH 80 (395)
T ss_dssp CEEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHH-HHCCSCEECCSS
T ss_pred CcceEEEEEecCCCcccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhh-hcCcEEEECCCC
Confidence 46899999999974 567889999999999999987 4689999998876 68989999999999 679999999999
Q ss_pred hhhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchH
Q 006683 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (635)
Q Consensus 107 s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~ 186 (635)
|..+.+++++++.+++|+|+++++ ++.+++. .+|+||+.|++..++.+++++++++||++|++|+ +++|| ....
T Consensus 81 S~~~~a~~~~~~~~~ip~is~~~~--~~~l~~~-~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d~~~g--~~~~ 154 (395)
T 3h6g_A 81 SSSANAVQSICNALGVPHIQTRWK--HQVSDNK-DSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTG--LIRL 154 (395)
T ss_dssp HHHHHHHHHHHHHTTCCEEECSCC--CCCTTCC-CCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-SSTHH--HHHT
T ss_pred hhHHHHHHHHHhcCCCCeEeeccC--ccccccc-CceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE-EChhH--HHHH
Confidence 999999999999999999999999 8888764 5889999999999999999999999999999998 66789 8889
Q ss_pred HHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEe
Q 006683 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (635)
Q Consensus 187 ~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~ 266 (635)
+.+++.+++.| ++++... ++.+. .|++.++++++++++|+|++ .+...++..++++++++|+.++.|+||+
T Consensus 155 ~~~~~~~~~~g-~~v~~~~-~~~~~------~d~~~~l~~i~~~~~~vi~~-~~~~~~~~~~~~qa~~~gl~~~~~~~i~ 225 (395)
T 3h6g_A 155 QELIKAPSRYN-LRLKIRQ-LPADT------KDAKPLLKEMKRGKEFHVIF-DCSHEMAAGILKQALAMGMMTEYYHYIF 225 (395)
T ss_dssp HHHHTGGGTSS-CEEEEEE-CCSSG------GGGHHHHHHHHHTTCCEEEE-ESCHHHHHHHHHHHHHTTCCSTTCEEEE
T ss_pred HHHHHhhhcCC-ceEEEEE-eCCCc------hhHHHHHHHHhhcCCeEEEE-ECCHHHHHHHHHHHHHccccCCceEEEE
Confidence 99999999999 9998875 66554 68999999999999999999 9999999999999999999999999998
Q ss_pred eCchhhhhcccChhhhhhccc--eEEEEeecCCCCchhHHHHHHHHHhhccCCCCCC----CCCCcchhhhHhhHHHHHH
Q 006683 267 TNTVANALDSLNTTVISSMEG--TLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEED----HFHPSIHALRAHDSIKIIT 340 (635)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~----~~~~~~~~~~~yDav~~~a 340 (635)
+.......+... . ...| +.++....+. +|..++|.++|++++....+... ...++.+++++|||+++++
T Consensus 226 ~~~~~~~~~~~~---~-~~~g~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a 300 (395)
T 3h6g_A 226 TTLDLFALDVEP---Y-RYSGVNMTGFRILNTE-NTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVS 300 (395)
T ss_dssp CCTTGGGBCCTT---T-TTSCCEEEEEECSCTT-SHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHH
T ss_pred ecCceeEechHH---h-ccCccceEEEEEecCC-cHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHH
Confidence 864332221111 1 1233 4555554443 47899999999987644332110 1125678999999999999
Q ss_pred HHHHhhcc-------c-----CCChHHHHHHHHcCcccceeeeEEEeC-CCCCCCCcEEEEEeeCCceEEEEeecCCCCC
Q 006683 341 EAIGRLNY-------N-----ISSPEMLLRQMLSSDFSGLSGKIRFKD-GELLNADTLRIVNVVGKKYKELDFWLPNFGF 407 (635)
Q Consensus 341 ~Al~~~~~-------~-----~~~~~~l~~~l~~~~f~g~~G~v~F~~-~g~~~~~~~~i~~~~~~~~~~vG~w~~~~~~ 407 (635)
+|++++++ | +.++..|+++|++++|+|++|+++||+ +|++.+..+.|++++++++++||.|++..++
T Consensus 301 ~Al~~a~~~~~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~~~vG~w~~~~g~ 380 (395)
T 3h6g_A 301 VAVQQFPQMTVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGL 380 (395)
T ss_dssp HHHHTCTTCCCCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEEEEEEEEETTTEE
T ss_pred HHHHhhhcCCCcCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccCCceEEEEEcCCCCc
Confidence 99999864 1 368999999999999999999999998 9999888999999999999999999998776
Q ss_pred cc
Q 006683 408 SK 409 (635)
Q Consensus 408 ~~ 409 (635)
..
T Consensus 381 ~~ 382 (395)
T 3h6g_A 381 NM 382 (395)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 12
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=1.9e-44 Score=385.72 Aligned_cols=380 Identities=18% Similarity=0.262 Sum_probs=302.2
Q ss_pred CCCeEEEEEEeeCCC-----------------cCcHHHHHHHHHHHHhHhcCC---CCeEEEEEEecCCCCHHHHHHHHH
Q 006683 31 IEEVTKIGAIVDANS-----------------QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQ 90 (635)
Q Consensus 31 ~~~~i~IG~i~p~s~-----------------~~g~~~~~a~~~Av~~iN~~~---~g~~l~~~~~D~~~~~~~a~~~~~ 90 (635)
.+++|.||+++|.+. ..|.+...|+.+|+||||+++ ||++|+++++|+++++..|++.+.
T Consensus 14 ~~GDi~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~~~~a~~~a~ 93 (496)
T 3ks9_A 14 MDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQSI 93 (496)
T ss_dssp ECCSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHHHHHH
T ss_pred cCCCEEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCCcHHHHHHHH
Confidence 368899999999762 135788999999999999998 799999999999999999999999
Q ss_pred HHh----------------------------hcCCeEEEEcCCChhhHHHHHHhhccCCccEEeecCCCCCCCCCCC-CC
Q 006683 91 ELI----------------------------NKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSR-RW 141 (635)
Q Consensus 91 ~li----------------------------~~~~v~aiiG~~~s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~-~~ 141 (635)
+++ .+++|.+|||+.+|..+.+++++++.+++|+|+++++ ++.++++ +|
T Consensus 94 ~ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~--~~~lsd~~~~ 171 (496)
T 3ks9_A 94 EFIRDSLISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSAT--SIDLSDKTLY 171 (496)
T ss_dssp HHHSTTC--------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCC--CGGGGCTTTC
T ss_pred HHHHhhhccccccCCCCccccCcccccccccCCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcC--CccccCccCC
Confidence 987 3678999999999999999999999999999999999 9999984 79
Q ss_pred ceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHH
Q 006683 142 PYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVR 221 (635)
Q Consensus 142 p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~ 221 (635)
||+||+.|++..++.++++++++|||+||++|++|++|| +...+.+++++++.| +||++.+.++... ...++.
T Consensus 172 p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G--~~~~~~~~~~~~~~G-i~v~~~~~i~~~~----~~~d~~ 244 (496)
T 3ks9_A 172 KYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYG--ESGMDAFKELAAQEG-LSIAHSDKIYSNA----GEKSFD 244 (496)
T ss_dssp TTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHHHHHHHHHHTT-CEEEEEEEECTTC----CHHHHH
T ss_pred CceEEecCChHHHHHHHHHHHHHcCCcEEEEEEeccHHH--HHHHHHHHHHHHHcC-ceEEEEEEECCCC----CHHHHH
Confidence 999999999999999999999999999999999999999 999999999999999 9999988886432 127899
Q ss_pred HHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEeeCchhhhhcccChhhhhhccceEEEEeecCCCC
Q 006683 222 GELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDS 299 (635)
Q Consensus 222 ~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 299 (635)
.+++++++. ++++|++ ++...++..+++++.+.|++++ +.||+++.|........ .....+.|+++++.+..+.
T Consensus 245 ~~l~~i~~~~~~a~vii~-~~~~~~~~~l~~~~~~~g~~~k-~~~i~s~~w~~~~~~~~-~~~~~~~G~l~~~~~~~~i- 320 (496)
T 3ks9_A 245 RLLRKLRERLPKARVVVC-FCEGMTVRGLLSAMRRLGVVGE-FSLIGSDGWADRDEVIE-GYEVEANGGITIKLQSPEV- 320 (496)
T ss_dssp HHHHHHHTTTTTTCEEEE-ECCHHHHHHHHHHHHHHTCCSC-CEEEECTTTTTCHHHHT-TCHHHHTTCEEEEECCCCC-
T ss_pred HHHHHHHhccCceEEEEE-ecChHHHHHHHHHHHHhCCCCc-EEEEEechhcccccccc-ccccccCceEEEeccCCcC-
Confidence 999999985 8899999 9999999999999999999875 57899988864322111 1235678999999887766
Q ss_pred chhHHHHHHHH----------HhhccCCCCC-------------CCCCC----------cchhhhHhhHHHHHHHHHHhh
Q 006683 300 SPYKEFSALFR----------RNFTSEYPEE-------------DHFHP----------SIHALRAHDSIKIITEAIGRL 346 (635)
Q Consensus 300 ~~~~~f~~~~~----------~~~~~~~~~~-------------~~~~~----------~~~~~~~yDav~~~a~Al~~~ 346 (635)
|++++|+++++ +.||...+.| ..|+. .......|+||+++|+|||++
T Consensus 321 pgf~~fl~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m 400 (496)
T 3ks9_A 321 RSFDDYFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNM 400 (496)
T ss_dssp HHHHHHHTTCCTTTCCSCTTHHHHHHHHTTCBCCC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred cchHhHhccCCcCCCCCCHHHHHHHHHHcCCCCCCCccccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 78998876532 2233222222 11221 112346999999999999988
Q ss_pred cc---------c----CCChHHHHHHHHcCcccceee-eEEEeCCCCCCCCcEEEEEeeC-----CceEEEEeecCCCCC
Q 006683 347 NY---------N----ISSPEMLLRQMLSSDFSGLSG-KIRFKDGELLNADTLRIVNVVG-----KKYKELDFWLPNFGF 407 (635)
Q Consensus 347 ~~---------~----~~~~~~l~~~l~~~~f~g~~G-~v~F~~~g~~~~~~~~i~~~~~-----~~~~~vG~w~~~~~~ 407 (635)
.. | ...+++|+++|++++|.+.+| .|.||++|+.. ..|+|++++. ..+++||.|+..
T Consensus 401 ~~~~~~~~~~~c~~~~~~~~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~~-~~YdI~n~~~~~~~~~~~~~VG~~~~~--- 476 (496)
T 3ks9_A 401 HHALCPGHVGLCDAMKPIDGSKLLDFLIKSSFIGVSGEEVWFDEKGDAP-GRYDIMNLQYTEANRYDYVHVGTWHEG--- 476 (496)
T ss_dssp HHHHSTTCSSCCGGGSSCCHHHHHHHHHTCEEECTTSCEEECCTTSCCC-CEEEEEEEEECC--CEEEEEEEEEETT---
T ss_pred HhccCCCCCCCCcCCCCCCHHHHHHHHHhcCCcCCCCCEEEECCCCCcc-ceEEEEEEEECCCCCEEEEEEEEEeCC---
Confidence 53 1 236889999999999999999 79999999996 8999999963 356899999731
Q ss_pred ccccCCCccCCCCCcccccCCCcccccCCCCcCcCCCc
Q 006683 408 SKTSSKHNVGDISSNIAAEGFTGPVIWPGNLINRNPKG 445 (635)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~i~Wp~~~~~~~P~~ 445 (635)
++. |++ +.| |.++.. ++|++
T Consensus 477 --~l~-------i~~-------~~i-w~~~~~-~vP~~ 496 (496)
T 3ks9_A 477 --VLN-------IDD-------YKI-QMNKSG-LVPRG 496 (496)
T ss_dssp --EEE-------ECT-------TTC-------------
T ss_pred --eEE-------Eeh-------hhc-ccCCCC-CCCCC
Confidence 222 332 456 877766 77754
No 13
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=1.3e-43 Score=369.96 Aligned_cols=350 Identities=14% Similarity=0.204 Sum_probs=289.8
Q ss_pred CCeEEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCC----CeEEEEEEecC-CCCHHHHHHHHHHHhhcCCeEEEEcCCC
Q 006683 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSR----NHKLSLQIRDH-NRDPFQAATAAQELINKEKVKVIAGMET 106 (635)
Q Consensus 32 ~~~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~----g~~l~~~~~D~-~~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (635)
+++|+||+++|.++ .+...|+++|+++||++++ +++|.+...++ .+++..+.+.+|+++ +++|.+||||.+
T Consensus 3 P~~I~IG~lf~~~~---~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~V~aiiG~~~ 78 (389)
T 4gpa_A 3 PSSVQIGGLFIRNT---DQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQY-SRGVFAIFGLYD 78 (389)
T ss_dssp CSEEEEEEEECTTC---HHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHH-HTTCSEEEECCC
T ss_pred CCeEEEEEEEcCCC---hHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHH-hcCCEEEEeCCc
Confidence 57899999999874 5778899999999999873 45555555553 468889999999999 799999999999
Q ss_pred hhhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchH
Q 006683 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (635)
Q Consensus 107 s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~ 186 (635)
|..+.+++++++.++||+|+++++ .+.. ..|++++ .|. +.+++++++++|+|++|++||+++.++ . ..
T Consensus 79 S~~~~~v~~i~~~~~ip~is~~~~--~~~~--~~~~~~~--~~~---~~~a~~~l~~~~~w~~vaii~~~d~~~--~-~~ 146 (389)
T 4gpa_A 79 KRSVHTLTSFCSALHISLITPSFP--TEGE--SQFVLQL--RPS---LRGALLSLLDHYEWNCFVFLYDTDRGY--S-IL 146 (389)
T ss_dssp TTTHHHHHHHHHHTTCEEEECSCC--CSSC--CSSEEEC--SCC---CHHHHHHHHHHTTCCEEEEEECSTTCS--H-HH
T ss_pred cHHHHHHHHHHHHhCCCceecccc--cccc--ccCCccc--cCC---HHHHHHHHHHHcCCcEEEEEEecchhh--H-HH
Confidence 999999999999999999998766 4322 3455544 444 357899999999999999999887765 4 46
Q ss_pred HHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEe
Q 006683 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (635)
Q Consensus 187 ~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~ 266 (635)
+.+.+.+.+.| ++|+....++... .+++.+++++++.++++|++ .+...++..+++++.++|+.++.++|+.
T Consensus 147 ~~~~~~~~~~g-~~v~~~~~~~~~~------~d~~~~l~~i~~~~~~vIv~-~~~~~~~~~il~~a~~~g~~~~~~~~i~ 218 (389)
T 4gpa_A 147 QAIMEKAGQNG-WHVSAICVENFND------VSYRQLLEELDRRQEKKFVI-DCEIERLQNILEQIVSVGKHVKGYHYII 218 (389)
T ss_dssp HHHHHHHHTTT-CEEEEEECTTCCH------HHHHHHHHHHHHHTCCEEEE-ECCHHHHHHHHHHHHHHTCSBTTCEEEE
T ss_pred HHHHHHHHhcC-ceEEEEeecCCcc------hhHHHHHHHhhccCCcEEEE-EechhHHHHHHHHHHHhCCCCCceEEEE
Confidence 77888899999 9999887665544 78999999999999999999 9999999999999999999999999999
Q ss_pred eCchhhhhcccChhhhhhccceEEEEeecCCCCchhHHHHHHHHHhhccCCCCCCCCCCcchhhhHhhHHHHHHHHHHhh
Q 006683 267 TNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (635)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~ 346 (635)
++.+...... .+......++.++....+.. |.+++|.++|++.+...+.. .+..+..+++++||||+++|+||+++
T Consensus 219 ~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~a~~YDAV~~~A~Al~~~ 294 (389)
T 4gpa_A 219 ANLGFKDISL--ERFIHGGANVTGFQLVDFNT-PMVTKLMDRWKKLDQREYPG-SETPPKYTSALTYDGVLVMAETFRSL 294 (389)
T ss_dssp CSSBGGGSCC--HHHHHHBCEEEEEECSCTTS-HHHHHHHHHHTTSCTTTSTT-TTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eCccccchhh--hhhhhcccceEEEEeecCCC-hHHHHHHHHHHHHhhhhccc-CCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 9877654332 23345566778887766554 78999999998776544322 24568889999999999999999998
Q ss_pred ccc--------------------CCChHHHHHHHHcCcccceeeeEEEeCCCCCCCCcEEEEEeeCCceEEEEeecCCCC
Q 006683 347 NYN--------------------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFG 406 (635)
Q Consensus 347 ~~~--------------------~~~~~~l~~~l~~~~f~g~~G~v~F~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~~ 406 (635)
..+ |.+|..|+++|++++|+|++|+|.||++|+|.+..|+|++++++++++||+|++..+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~~~VG~W~~~~g 374 (389)
T 4gpa_A 295 RRQKIDISRRGNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDK 374 (389)
T ss_dssp HHTTCCCCCTTCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEEEEEEEEETTTE
T ss_pred HhhcccccccCCccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEEEEEEEEECCCC
Confidence 542 246789999999999999999999999999988899999999999999999999876
Q ss_pred Ccc
Q 006683 407 FSK 409 (635)
Q Consensus 407 ~~~ 409 (635)
+..
T Consensus 375 l~~ 377 (389)
T 4gpa_A 375 LVL 377 (389)
T ss_dssp EEE
T ss_pred eEE
Confidence 543
No 14
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=3.3e-45 Score=390.98 Aligned_cols=359 Identities=18% Similarity=0.281 Sum_probs=271.7
Q ss_pred CCeEEEEEEeeCCC-------------cCcHHHHHHHHHHHHhHhcCC---CCeEEEEEEecCCCCHHHHHHHHHHHhhc
Q 006683 32 EEVTKIGAIVDANS-------------QMGKQAITAMKIAVQNFNSDS---RNHKLSLQIRDHNRDPFQAATAAQELINK 95 (635)
Q Consensus 32 ~~~i~IG~i~p~s~-------------~~g~~~~~a~~~Av~~iN~~~---~g~~l~~~~~D~~~~~~~a~~~~~~li~~ 95 (635)
+++|+||+++|+++ ..|.+...|+++|+|+||+++ ||++|+++++|+++++..+++.+.++++.
T Consensus 14 ~gdi~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~~~~a~~~a~~ll~~ 93 (481)
T 3mq4_A 14 EGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFVQA 93 (481)
T ss_dssp CCSEEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTCHHHHHHHHGGGGGG
T ss_pred CCCEEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCChHHHHHHHHHHHhC
Confidence 57899999999983 257899999999999999998 69999999999999999999999999863
Q ss_pred ----------------------CCeEEEEcCCChhhHHHHHHhhccCCccEEeecCCCCCCCCCC-CCCceEEEEecCcH
Q 006683 96 ----------------------EKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMS-RRWPYLIRMASNDS 152 (635)
Q Consensus 96 ----------------------~~v~aiiG~~~s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~-~~~p~~~r~~p~~~ 152 (635)
++|.+|||+.+|..+.+++++++.+++|+|+++++ ++.|++ .+|||+||+.|++.
T Consensus 94 ~~~~~~pny~C~~~~~~~~~~~~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~--~~~lsd~~~~p~~fr~~psd~ 171 (481)
T 3mq4_A 94 LIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYAST--APELSDDRRYDFFSRVVPPDS 171 (481)
T ss_dssp GSCCCC--------------CCCCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCC--CGGGGCTTTTTTEEESSCCTH
T ss_pred CcccCCCCcccCCCCCcccccCCCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccC--CccccCcccCCceEEecCchH
Confidence 68999999999999999999999999999999999 999998 58999999999999
Q ss_pred HHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhc-cCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhh-hc
Q 006683 153 EQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQN-VSSSEIQSRLVLPPISSISDPKEAVRGELKKVQ-DK 230 (635)
Q Consensus 153 ~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~-~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~-~~ 230 (635)
.++.++++++++|||+||++|++|++|| +...+.+++.+++ .| +||++.+.++......+ .++..++++++ ++
T Consensus 172 ~~~~a~~~ll~~fgw~~V~li~~d~~~G--~~~~~~~~~~~~~~~G-i~va~~~~i~~~~~~~~--~d~~~~l~~i~~~s 246 (481)
T 3mq4_A 172 FQAQAMVDIVKALGWNYVSTLASEGSYG--EKGVESFTQISKEAGG-LSIAQSVRIPQERKDRT--IDFDRIIKQLLDTP 246 (481)
T ss_dssp HHHHHHHHHHHHHTCCEEEEC---CHHH--HHHHHHHHHCC---CC-CEECCCCCCCCC--------CCSHHHHCCCCC-
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEcchhH--HHHHHHHHHHHHHhCC-EEEEEEEEcCCCCccch--HHHHHHHHHHHhcC
Confidence 9999999999999999999999999999 9999999988875 78 99998887765431110 26778999998 57
Q ss_pred CceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEeeCchhhhhcccChhhhhhccceEEEEeecCCCCchhHHHHHHHH
Q 006683 231 QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFR 310 (635)
Q Consensus 231 ~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~ 310 (635)
++|+||+ .+...++..+++++.+.|+.++ ++||.++.|........ .....+.|+++++++..+. |++++|+..++
T Consensus 247 ~a~vIi~-~~~~~~~~~l~~~~~~~g~~~~-~~wI~s~~w~~~~~~~~-~~~~~~~G~l~~~~~~~~i-pgf~~fl~~~~ 322 (481)
T 3mq4_A 247 NSRAVVI-FANDEDIKQILAAAKRADQVGH-FLWVGSDSWGSKINPLH-QHEDIAEGAITIQPKRATV-EGFDAYFTSRT 322 (481)
T ss_dssp ---CEEE-CCCSSHHHHHC----------C-CCEEEC------------------CCCEEEEECCCCC-HHHHHHHHTCC
T ss_pred CCEEEEE-EEChHHHHHHHHHHHHccCCcc-eEEEEECcccccccccc-ccchhhccEEEEecCcCcc-ccHHHHhhcCC
Confidence 9999999 9999999999999999999863 68999998865322211 2235678999999887765 78998876532
Q ss_pred ----------HhhccCCCCC-------------CCCCC------------cchhhhHhhHHHHHHHHHHhhcc--c----
Q 006683 311 ----------RNFTSEYPEE-------------DHFHP------------SIHALRAHDSIKIITEAIGRLNY--N---- 349 (635)
Q Consensus 311 ----------~~~~~~~~~~-------------~~~~~------------~~~~~~~yDav~~~a~Al~~~~~--~---- 349 (635)
+.||+..+.| ..|.. .......||||+++|+|||++.. |
T Consensus 323 p~~~p~d~~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~~ 402 (481)
T 3mq4_A 323 LENNRRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADYR 402 (481)
T ss_dssp TTTCTTCTTHHHHHHHHHTCCC------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred cCcCCCCHHHHHHHHHhcCCCCCCccccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 2222211111 01211 13345799999999999998853 1
Q ss_pred -------CCChHHHHHHHHcCcccceee-eEEEeCCCCCCCCcEEEEEeeC-----CceEEEEeec
Q 006683 350 -------ISSPEMLLRQMLSSDFSGLSG-KIRFKDGELLNADTLRIVNVVG-----KKYKELDFWL 402 (635)
Q Consensus 350 -------~~~~~~l~~~l~~~~f~g~~G-~v~F~~~g~~~~~~~~i~~~~~-----~~~~~vG~w~ 402 (635)
..++++|+++|++++|.+.+| .|.||++|++. ..|+|++++. ..+++||.|+
T Consensus 403 ~~c~~~~~~~~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~~-~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 403 GVCPEMEQAGGKKLLKYIRNVNFNGSAGTPVMFNKNGDAP-GRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp -CCHHHHTSCHHHHHHHHHTCEEECTTSSEEECCTTSCCC-CEEEEEEEC-----CCCEEEEEEEE
T ss_pred CCCCCCCCcCHHHHHHHHhcceeecCCCCEEEECCCCCCc-eeEEEEEEEECCCCcEEEEEEEEEc
Confidence 246789999999999999999 99999999996 8999999962 2678999997
No 15
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=5.2e-44 Score=372.01 Aligned_cols=320 Identities=19% Similarity=0.293 Sum_probs=268.1
Q ss_pred CCeEEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCC--CeEEEEEEecCCCCHHHHHHHHHH-HhhcCCeEEEEc-----
Q 006683 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSR--NHKLSLQIRDHNRDPFQAATAAQE-LINKEKVKVIAG----- 103 (635)
Q Consensus 32 ~~~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~--g~~l~~~~~D~~~~~~~a~~~~~~-li~~~~v~aiiG----- 103 (635)
+++||||+++|++ ....|+++|++++|++++ +++|+++..|+++||..+++.+++ |+ +++|.+|||
T Consensus 3 ~~~i~IG~i~~~s-----~~~~~~~lAv~~iN~~~~~~~~~l~~~~~d~~~d~~~a~~~~~~~Li-~~~V~aiiG~~~~~ 76 (384)
T 3qek_A 3 PKIVNIGAVLSTK-----KHEQIFREAVNQANKRHFTRKIQLQATSVTHRPNAIQMALSVCEDLI-SSQVYAILVSHPPA 76 (384)
T ss_dssp CEEEEEEEEESSH-----HHHHHHHHHHHHHHHHSCCSSEEEEEEEEECCSSHHHHHHHHHHHTG-GGTEEEEEECC---
T ss_pred ceEEEEeEEeeCc-----hHHHHHHHHHHHHhccccCCceEEEEEEecccCCHHHHHHHHHHHHH-HcCceEEEEecCCC
Confidence 5789999999998 678999999999999874 578999999999999999988776 78 469999999
Q ss_pred CCChhhHHHHHHhhccCCccEEeecCCCCCCCCCC-CCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCC
Q 006683 104 METWEETAVVAEIASRVQVPILSFAAPAVTPLSMS-RRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGD 182 (635)
Q Consensus 104 ~~~s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~-~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~ 182 (635)
|.++..+.++++++..+++|+|+++++ ++.+++ ..|||+||+.|++..++.+++++++++||++|++|+++++||
T Consensus 77 ~~~s~~~~a~~~~~~~~~iP~is~~~~--~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~~~G-- 152 (384)
T 3qek_A 77 PTDHLTPTPISYTAGFYRIPVIGLTTR--MSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEG-- 152 (384)
T ss_dssp -----CCHHHHHHHHTTTCCEEESSCC--CGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHH--
T ss_pred CccchhHHHHHHHHhcCCCCEEecccC--chhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCccc--
Confidence 567788899999999999999999999 888987 578999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhccCCeEE-----------EE----------EeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCC
Q 006683 183 SGKLALLAEALQNVSSSEI-----------QS----------RLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQAS 241 (635)
Q Consensus 183 ~~~~~~~~~~l~~~g~~~v-----------~~----------~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~ 241 (635)
+...+.+++.+++.| +++ .+ ...+..+. .|++.++++++++++|+|++ ++.
T Consensus 153 ~~~~~~~~~~~~~~g-~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~------~d~~~~l~~i~~~~~~vii~-~~~ 224 (384)
T 3qek_A 153 RAAQKKLETLLEGKE-SKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGT------KNLTALLLEAKELEARVIIL-SAS 224 (384)
T ss_dssp HHHHHHHHHHHC---------------CCSCCCCCCCCEEEEEEEECTTC------SCCHHHHHHHHTSSCCEEEE-ECC
T ss_pred HHHHHHHHHHHHhcc-CccccccccccceeeeccccCcccceecccCCch------hhHHHHHHHHHhcCCcEEEE-ECC
Confidence 999999999999998 753 21 11122222 56899999999999999999 999
Q ss_pred hhHHHHHHHHHHHcCCCCCCeEEEeeCchhhhhcccChhhhhhccceEEEEeecCCCCchhHHHHHHHHHhhccCCCCCC
Q 006683 242 LDMTIHLFTEANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEED 321 (635)
Q Consensus 242 ~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 321 (635)
..++..++++++++|+++++++||+++.+.... ......+|++++..+.+..
T Consensus 225 ~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~-----~~~~~~~g~lg~~~~~~~~----------------------- 276 (384)
T 3qek_A 225 EDDATAVYKSAAMLDMTGAGYVWLVGEREISGS-----ALRYAPDGIIGLQLINGKN----------------------- 276 (384)
T ss_dssp HHHHHHHHHHHHHTTCSSTTCEEECCSGGGSGG-----GGSSCCTTCEEEEETTTTC-----------------------
T ss_pred HHHHHHHHHHHHHcCCccCCeEEEEeccccccc-----cccccCCccEEEEEcCCCc-----------------------
Confidence 999999999999999998889999999875321 1224678999998764321
Q ss_pred CCCCcchhhhHhhHHHHHHHHHHhhcc----------c------CCChHHHHHHHHcCcc-cceeeeEEEeCCCCCCCCc
Q 006683 322 HFHPSIHALRAHDSIKIITEAIGRLNY----------N------ISSPEMLLRQMLSSDF-SGLSGKIRFKDGELLNADT 384 (635)
Q Consensus 322 ~~~~~~~~~~~yDav~~~a~Al~~~~~----------~------~~~~~~l~~~l~~~~f-~g~~G~v~F~~~g~~~~~~ 384 (635)
.++.+||||+++++|++++.. | |..+..|++.+++++| +|++|++.||++|++.+..
T Consensus 277 ------~~~~~YdAV~~~a~Al~~~~~~~~~~~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~~ 350 (384)
T 3qek_A 277 ------ESAHISDAVAVVAQAIHELFEMENITDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQ 350 (384)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHTSSSCCCCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCBCSCC
T ss_pred ------hhHHHHHHHHHHHHHHHHHHhccCCCCCCCccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCCCccc
Confidence 257899999999999998753 1 3467788999999998 9999999999999987799
Q ss_pred EEEEEeeCCceEEEEeecC
Q 006683 385 LRIVNVVGKKYKELDFWLP 403 (635)
Q Consensus 385 ~~i~~~~~~~~~~vG~w~~ 403 (635)
|+|+++++.++++||.|+.
T Consensus 351 ~~I~~~~~~~~~~VG~w~~ 369 (384)
T 3qek_A 351 YSIMNLQNRKLVQVGIFNG 369 (384)
T ss_dssp EEEEEEETTEEEEEEEECS
T ss_pred EEEEEEcCCceEEEEEEeC
Confidence 9999999999999999983
No 16
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=100.00 E-value=2.5e-39 Score=337.15 Aligned_cols=348 Identities=19% Similarity=0.190 Sum_probs=294.6
Q ss_pred CCeEEEEEEeeCCCc--CcHHHHHHHHHHHHhHhcCCC--C-eEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCC
Q 006683 32 EEVTKIGAIVDANSQ--MGKQAITAMKIAVQNFNSDSR--N-HKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (635)
Q Consensus 32 ~~~i~IG~i~p~s~~--~g~~~~~a~~~Av~~iN~~~~--g-~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (635)
+++|+||+++|+++. .|.....|+++|++++|++++ | ++|+++++|+++++..+.+.+++|+.+++|.+||||.+
T Consensus 3 ~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~ 82 (387)
T 3i45_A 3 LEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGTFL 82 (387)
T ss_dssp CCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEECCS
T ss_pred CCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEECCcc
Confidence 578999999999863 467789999999999999983 4 99999999999999999999999996679999999999
Q ss_pred hhhHHHHHHhhccCCccEEeecCCCCCCCCCC-CCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcch
Q 006683 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMS-RRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (635)
Q Consensus 107 s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~-~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~ 185 (635)
|..+.++++++...+||+|++.++ ++.++. ..+||+||+.|++..++.++++++.+++|++|++|+.+++|| +..
T Consensus 83 s~~~~a~~~~~~~~~ip~i~~~~~--~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g--~~~ 158 (387)
T 3i45_A 83 SHVGLAVSDFARQRKVLFMASEPL--TDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYG--QSA 158 (387)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSCC--CGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHH--HHH
T ss_pred hHHHHHHHHHHHHcCceEEecCCC--chhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCCchHh--HHH
Confidence 999999999999999999999988 788875 578999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHhcc--CCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeE
Q 006683 186 LALLAEALQNV--SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSV 263 (635)
Q Consensus 186 ~~~~~~~l~~~--g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~ 263 (635)
.+.+++.+++. | ++++....++.+. .++...++++++.++|+|++ .+...++..+++++.+.|+... .
T Consensus 159 ~~~~~~~l~~~~~g-~~vv~~~~~~~~~------~d~~~~~~~i~~~~~d~v~~-~~~~~~~~~~~~~~~~~g~~~~--~ 228 (387)
T 3i45_A 159 VARFKELLLAARPE-VTFVAEQWPALYK------LDAGPTVQALQQAEPEGLFN-VLFGADLPKFVREGRVRGLFAG--R 228 (387)
T ss_dssp HHHHHHHHHHHCTT-CEEEEEECCCTTC------CCHHHHHHHHHHTCCSEEEE-CCCTTHHHHHHHHHHHHTSSTT--C
T ss_pred HHHHHHHHHHhCCC-cEEEeeecCCCCC------cCHHHHHHHHHhCCCCEEEE-cCccHHHHHHHHHHHHcCCCCC--C
Confidence 99999999998 8 9998887777654 56899999999999999999 9899999999999999999654 3
Q ss_pred EEeeCch--hhhhcccChhhhhhccceEEEEe-ecCCCCchhHHHHHHHHHhhccCCCCCCCCCCcchhhhHhhHHHHHH
Q 006683 264 WIVTNTV--ANALDSLNTTVISSMEGTLGIKS-YYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIIT 340 (635)
Q Consensus 264 ~i~~~~~--~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a 340 (635)
++.+... ...+.... ....+|++.... +.....|..++|.++|+++|. ..|+.++..+|||+++++
T Consensus 229 ~i~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--------~~p~~~~~~~Yda~~~~a 297 (387)
T 3i45_A 229 QVVSMLTGEPEYLNPLK---DEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARWK--------EDPFVGSLVGYNTLTAMA 297 (387)
T ss_dssp EEEEEEEESHHHHGGGG---GGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHHS--------SCCCHHHHHHHHHHHHHH
T ss_pred eEEeecCCChHHHHHhh---hhccCceEEecccccCCCCHHHHHHHHHHHHHHC--------CCCCcHHHHHHHHHHHHH
Confidence 3333222 12222111 134577765533 333456889999999999884 357788999999999999
Q ss_pred HHHHhhcccCCChHHHHHHHHcCcccceeeeEEEeCCCCCCCCcEEEEEee-CCceEEEEeecCCCC
Q 006683 341 EAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV-GKKYKELDFWLPNFG 406 (635)
Q Consensus 341 ~Al~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~F~~~g~~~~~~~~i~~~~-~~~~~~vG~w~~~~~ 406 (635)
+|+++++. .+++.|+++|++++|+|++|+++|++++++....+.|.+++ +++..+++.|....+
T Consensus 298 ~Al~~ag~--~~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~g~~~i~~w~~~~~ 362 (387)
T 3i45_A 298 VAFEKAGG--TESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGKGVMVDWRYVDG 362 (387)
T ss_dssp HHHHHHTS--CCHHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTEEEEEEEEEECG
T ss_pred HHHHHhCC--CCHHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEeeCCceeEEeeEEeCc
Confidence 99999987 89999999999999999999999997555555788888875 566789999976543
No 17
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=100.00 E-value=7.2e-39 Score=331.36 Aligned_cols=344 Identities=18% Similarity=0.220 Sum_probs=288.6
Q ss_pred CCeEEEEEEeeCCC---cCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCC-CHHHHHHHHHHHhhcCCeEEEEcCCCh
Q 006683 32 EEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR-DPFQAATAAQELINKEKVKVIAGMETW 107 (635)
Q Consensus 32 ~~~i~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~-~~~~a~~~~~~li~~~~v~aiiG~~~s 107 (635)
.++||||+++|+|+ ..|.....|+++|++++|..-.|++|+++++|+++ +|..++..+.+|+.+++|.+||||.+|
T Consensus 3 Ad~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~nggi~G~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG~~~S 82 (371)
T 4f06_A 3 ADTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHGNKVAGHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLAGLYFT 82 (371)
T ss_dssp -CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHCSEETTEEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEECCSH
T ss_pred CCcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhCCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 57899999999995 45788999999999999933368999999999975 899999999999988999999999999
Q ss_pred hhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHH
Q 006683 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLA 187 (635)
Q Consensus 108 ~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~ 187 (635)
..+.+++++++..++|+|+++++ ++.++.. .||+||+.|++..++.++++++++.+|+++++|+.+++|| +...+
T Consensus 83 ~~~~a~~~~~~~~~vp~i~~~a~--~~~~~~~-~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g--~~~~~ 157 (371)
T 4f06_A 83 PNAMAVAPLLQEAKVPMVVMNAA--TSSITEK-SPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPG--IDAET 157 (371)
T ss_dssp HHHHHHGGGHHHHTCCEEESSCC--CGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHH
T ss_pred cchHHHHHHHHhhcCCccccccc--cchhccc-CCcceecccchhhhhhhhhhhhhhcCceEEEEEcCCcccc--hhHHH
Confidence 99999999999999999999988 7877764 4899999999999999999999999999999999999999 99999
Q ss_pred HHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEee
Q 006683 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (635)
Q Consensus 188 ~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~~ 267 (635)
.+++.+++.| ++++..+.++.+. +|+++++.++++.++|+|++......+...+++++.+.|+....+.++..
T Consensus 158 ~~~~~~~~~g-~~vv~~~~~~~~~------~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 230 (371)
T 4f06_A 158 AFKKTFEAEG-GKVVEAVRMPLST------TDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVKLMST 230 (371)
T ss_dssp HHHHHHHHTT-CEEEEEEEECTTC------CCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCEEEEE
T ss_pred HHHHHHHhcC-CceEEEEecCccc------ccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcEEEEe
Confidence 9999999999 9999999998876 67999999999999999987244557888899999999998766666665
Q ss_pred CchhhhhcccChhhhhhccceEEEEeecCC-CCchhHHHHHHHHHhhccCCCCCCCCCCcchhhhHhhHHHHHHHHHHhh
Q 006683 268 NTVANALDSLNTTVISSMEGTLGIKSYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (635)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~ 346 (635)
......... ........|++....+... ..|..++|.+.|+++|... ..++.++..+||+++++++|+++.
T Consensus 231 ~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~------~~~~~~a~~~Yda~~~l~~Ai~~~ 302 (371)
T 4f06_A 231 GDVVTEPDL--PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAKL------DEVTMTSVAAYDGARLIYKMIEAT 302 (371)
T ss_dssp GGGGCGGGH--HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCCG------GGCCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCCHHHH--HhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCCC------CCccchHHHHHHHHHHHHHHHHHh
Confidence 543221111 1122456777776655433 4578899999999887421 246778999999999999999965
Q ss_pred cccCCChHHHHHHHHcCcccceeeeEEEeCCCCCCCCcEEEEEee--CCceE
Q 006683 347 NYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV--GKKYK 396 (635)
Q Consensus 347 ~~~~~~~~~l~~~l~~~~f~g~~G~v~F~~~g~~~~~~~~i~~~~--~~~~~ 396 (635)
.. ..+++.++++|++++|+|++|+++||++++.....+.|.+++ +|+++
T Consensus 303 ag-~~d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~~~dGk~v 353 (371)
T 4f06_A 303 SG-KSDPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVEKVDGKLI 353 (371)
T ss_dssp TT-SCCHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEEEETTEEE
T ss_pred cC-CCCHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEEecCCEEE
Confidence 43 278999999999999999999999998777666778888886 56653
No 18
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=2.2e-38 Score=327.58 Aligned_cols=342 Identities=18% Similarity=0.245 Sum_probs=294.9
Q ss_pred CCeEEEEEEeeCCC---cCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChh
Q 006683 32 EEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (635)
Q Consensus 32 ~~~i~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (635)
+.++|||+++|+|+ ..|.....|+++|++++|+ -.|++++++++|+++++..+.+.+++++.+++|.+||||.++.
T Consensus 14 ~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~-i~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG~~~s~ 92 (366)
T 3td9_A 14 RKVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT-VLGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIGEVASA 92 (366)
T ss_dssp --CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE-ETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHH
T ss_pred cceEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh-cCCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEccCCch
Confidence 46899999999995 4578999999999999998 4589999999999999999999999999767799999999999
Q ss_pred hHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH-HHCCCeEEEEEEE-cCCCCCCcchH
Q 006683 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA-RKYNWRRVAAIYE-DNVYGGDSGKL 186 (635)
Q Consensus 109 ~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l-~~~~w~~vaii~~-~~~~g~~~~~~ 186 (635)
.+.++++++...++|+|++.++ ++.++. .+||+||+.|++..++.++++++ +++||++|++|+. +++|| ....
T Consensus 93 ~~~~~~~~~~~~~iP~i~~~~~--~~~~~~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~--~~~~ 167 (366)
T 3td9_A 93 HSLAIAPIAEENKVPMVTPAST--NPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYS--VGLS 167 (366)
T ss_dssp HHHHHHHHHHHTTCCEEESSCC--CGGGTT-TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHH--HHHH
T ss_pred hHHHHHHHHHhCCCeEEecCCC--CccccC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHH--HHHH
Confidence 9999999999999999999888 777755 56999999999999999999999 6689999999987 56788 8888
Q ss_pred HHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEe
Q 006683 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (635)
Q Consensus 187 ~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~ 266 (635)
+.+++.+++.| ++++... ++.+. .++...++++++.++|+|++ .+....+..+++++++.|+.. .|+.
T Consensus 168 ~~~~~~~~~~G-~~v~~~~-~~~~~------~d~~~~~~~l~~~~~d~v~~-~~~~~~a~~~~~~~~~~g~~~---~~~~ 235 (366)
T 3td9_A 168 NFFINKFTELG-GQVKRVF-FRSGD------QDFSAQLSVAMSFNPDAIYI-TGYYPEIALISRQARQLGFTG---YILA 235 (366)
T ss_dssp HHHHHHHHHTT-CEEEEEE-ECTTC------CCCHHHHHHHHHTCCSEEEE-CSCHHHHHHHHHHHHHTTCCS---EEEE
T ss_pred HHHHHHHHHCC-CEEEEEE-eCCCC------ccHHHHHHHHHhcCCCEEEE-ccchhHHHHHHHHHHHcCCCc---eEEe
Confidence 99999999999 9998877 77654 46788999999999999999 999999999999999999965 6777
Q ss_pred eCchhhhhcccChhhhhhccceEEEEeecCCC--CchhHHHHHHHHHhhccCCCCCCCCCCcchhhhHhhHHHHHHHHHH
Q 006683 267 TNTVANALDSLNTTVISSMEGTLGIKSYYSDD--SSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIG 344 (635)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~ 344 (635)
++.+.... .. .......+|++....+.+.. .|..++|.++|+++|. ..|+.++..+|||++++++|++
T Consensus 236 ~~~~~~~~-~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g--------~~p~~~~~~~yda~~~~~~al~ 305 (366)
T 3td9_A 236 GDGADAPE-LI-EIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKYG--------KEPAALNALGYDAYMVLLDAIE 305 (366)
T ss_dssp CGGGCSTH-HH-HHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHHS--------SCCCHHHHHHHHHHHHHHHHHH
T ss_pred eCCcCCHH-HH-HHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHC--------CCCchhHHHHHHHHHHHHHHHH
Confidence 66543211 10 11224668888777654432 5789999999999884 4578899999999999999999
Q ss_pred hhcccCCChHHHHHHHHcCc-ccceeeeEEEeCCCCCCCCcEEEEEeeCCceEEEEeecCC
Q 006683 345 RLNYNISSPEMLLRQMLSSD-FSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPN 404 (635)
Q Consensus 345 ~~~~~~~~~~~l~~~l~~~~-f~g~~G~v~F~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~ 404 (635)
+++. .+++.+.++|++++ |+|++|+++|+++|++. ..+.|+++++++++.|+.|++.
T Consensus 306 ~ag~--~~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~~ 363 (366)
T 3td9_A 306 RAGS--FDREKIAEEIRKTRNFNGASGIINIDENGDAI-KSVVVNIVKNGSVDFEAVINPD 363 (366)
T ss_dssp HHTS--CCHHHHHHHHTTCCSEEETTEEECBCTTSCBC-CCEEEEEEETTEEEEEEEECGG
T ss_pred HhCC--CCHHHHHHHHHhCCCCcccceeeEECCCCCcc-CceEEEEEECCEEEEEEecChh
Confidence 9987 89999999999997 99999999999999987 5699999999999999999864
No 19
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=100.00 E-value=7.2e-39 Score=337.34 Aligned_cols=338 Identities=10% Similarity=0.056 Sum_probs=282.2
Q ss_pred CCeEEEEEEeeCCCc---CcHHHHHHHHHHHHhHhcCCC--CeEEEEEEecCC-CCHHHHHHHHHHHhhcCCeEEEEcCC
Q 006683 32 EEVTKIGAIVDANSQ---MGKQAITAMKIAVQNFNSDSR--NHKLSLQIRDHN-RDPFQAATAAQELINKEKVKVIAGME 105 (635)
Q Consensus 32 ~~~i~IG~i~p~s~~---~g~~~~~a~~~Av~~iN~~~~--g~~l~~~~~D~~-~~~~~a~~~~~~li~~~~v~aiiG~~ 105 (635)
+++|+||+++|+++. .|.....|+++|++++|++++ |++|+++++|++ +++..+.+.+++|+.+++|.+||||.
T Consensus 12 ~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~aiiG~~ 91 (419)
T 3h5l_A 12 SDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGILGRPIELVFADTQSKGVDVVIQSAQRLIDRDNASALIAGY 91 (419)
T ss_dssp -CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBTTBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEEECSC
T ss_pred CCCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcCceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEEEccc
Confidence 468999999999964 478999999999999999984 799999999987 69999999999999779999999999
Q ss_pred ChhhHHHHHHhhccCCccEEeecCCCCCCCCC-----C-CCCceEEEEecCcHHHHHHHHHHHHHC--------CCeEEE
Q 006683 106 TWEETAVVAEIASRVQVPILSFAAPAVTPLSM-----S-RRWPYLIRMASNDSEQMKCIADLARKY--------NWRRVA 171 (635)
Q Consensus 106 ~s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~-----~-~~~p~~~r~~p~~~~~~~al~~~l~~~--------~w~~va 171 (635)
+|..+.+++++++.++||+|++++. +.+. + ..|+|+||+.|++..++.+++++++++ +|++|+
T Consensus 92 ~s~~~~a~~~~~~~~~ip~i~~~~~---~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va 168 (419)
T 3h5l_A 92 NLENGTALHDVAADAGVIAMHANTV---AVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKIA 168 (419)
T ss_dssp CSSCSCHHHHHHHHHTCEEEECCCC---HHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEEE
T ss_pred cchhHHHhHHHHHHcCCeEEEcCcc---hhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhccccCCCCEEE
Confidence 9999999999999999999997543 3322 2 468999999999999999999999875 899999
Q ss_pred EEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCC-hhHHHHHHH
Q 006683 172 AIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQAS-LDMTIHLFT 250 (635)
Q Consensus 172 ii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~-~~~~~~~l~ 250 (635)
+|+++++|| +...+.+++.+++.| ++|+..+.++.+. .|++.+++++++.++|+|++ .+. +.++..+++
T Consensus 169 il~~~~~~g--~~~~~~~~~~~~~~g-~~vv~~~~~~~~~------~d~~~~l~~i~~~~~d~v~~-~~~~~~~~~~~~~ 238 (419)
T 3h5l_A 169 IITGPGIYS--VNIANAIRDGAGEYG-YDVSLFETVAIPV------SDWGPTLAKLRADPPAVIVV-THFYPQDQALFMN 238 (419)
T ss_dssp EEECSSHHH--HHHHHHHHHHGGGGT-CEEEEEEECCSSC------SCCHHHHHHHHHSCCSEEEE-CCCCHHHHHHHHH
T ss_pred EEEcCcchh--HHHHHHHHHHHHHcC-CeEEEEecCCCCC------ccHHHHHHHHHhcCCCEEEE-ccccCchHHHHHH
Confidence 999999999 999999999999999 9999988887765 57899999999999999999 754 678999999
Q ss_pred HHHHcCCCCCCeEEEeeCchhhhhcccChhhhhhccceEEEEeecCCCCchhHHHHHHHHHhhccCCCCCCCCCCc-chh
Q 006683 251 EANRMGLVGKDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPS-IHA 329 (635)
Q Consensus 251 ~a~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~-~~~ 329 (635)
++.++|+.. .|+.+..+... ... .......+|++....+....+|..++|.++|+++|. ..+. .++
T Consensus 239 ~~~~~g~~~---~~~~~~~~~~~-~~~-~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~g--------~~p~~~~a 305 (419)
T 3h5l_A 239 QFMTDPTNS---LVYLQYGASLA-AFR-DIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERYG--------DLSSTASG 305 (419)
T ss_dssp HHTTSCCSC---EEEECSGGGSH-HHH-HHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHHC--------TTSCHHHH
T ss_pred HHHHcCCCc---eEEecCCCCcH-HHH-HhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHhC--------CCCCcchh
Confidence 999999933 67776655421 111 112245678876665544456789999999999985 2343 588
Q ss_pred hhHhhHHHHHHHHHHhhccc-----CCChHHHHHHHHcCcccceeeeEEEeCCCCCC------------CCcEEEEEeeC
Q 006683 330 LRAHDSIKIITEAIGRLNYN-----ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLN------------ADTLRIVNVVG 392 (635)
Q Consensus 330 ~~~yDav~~~a~Al~~~~~~-----~~~~~~l~~~l~~~~f~g~~G~v~F~~~g~~~------------~~~~~i~~~~~ 392 (635)
..+|||++++++|+++++.+ ..+++.++++|++++|+|++|+++|+++|+.. ...+.|+|+++
T Consensus 306 ~~~Yda~~~~~~a~~~a~~~~~~g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~~~~~~~~~~~~~~~~~~~i~q~q~ 385 (419)
T 3h5l_A 306 CQTYSALYAYSIAAALAGGPGAPYDDVQNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTETNDPSLGMPHIFSQIFD 385 (419)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCTTCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTCSCTTSSEECEEEECCC
T ss_pred HHHHHHHHHHHHHHHHhcCCccCCCccCHHHHHHHHHhCCcccCceEEEECCCCCccccccCccCCccccCCceEEEeeC
Confidence 99999999999999988752 13678999999999999999999999999843 23466888888
Q ss_pred Cce
Q 006683 393 KKY 395 (635)
Q Consensus 393 ~~~ 395 (635)
+++
T Consensus 386 g~~ 388 (419)
T 3h5l_A 386 KAE 388 (419)
T ss_dssp TTS
T ss_pred Cce
Confidence 877
No 20
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=100.00 E-value=3.8e-38 Score=326.88 Aligned_cols=336 Identities=14% Similarity=0.198 Sum_probs=291.2
Q ss_pred CCeEEEEEEeeCCCc---C-cHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCCh
Q 006683 32 EEVTKIGAIVDANSQ---M-GKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETW 107 (635)
Q Consensus 32 ~~~i~IG~i~p~s~~---~-g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s 107 (635)
.++|+||+++|+++. . |.....|+++|++++|..-.|++++++++|+++++..+.+.+++|+.+++|.+||||.+|
T Consensus 2 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~~~s 81 (375)
T 3i09_A 2 ADSVKIGFITDMSGLYADIDGQGGLEAIKMAVADFGGKVNGKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGGTNS 81 (375)
T ss_dssp CSSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHHTSEETTEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEECSCH
T ss_pred CCCeEEEEEeCCCcccccccCHHHHHHHHHHHHHhCCCCCCeEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECCCCc
Confidence 468999999999853 3 778999999999999532258999999999999999999999999966999999999999
Q ss_pred hhHHHHHHhhccCCccEEeecCCCCCCCCCC-CCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchH
Q 006683 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMS-RRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (635)
Q Consensus 108 ~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~-~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~ 186 (635)
..+.++++++...++|+|+++++ ++.+++ ..+||+||+.|++..++.++++++.+++|++|++|+.++++| +...
T Consensus 82 ~~~~a~~~~~~~~~ip~i~~~~~--~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g--~~~~ 157 (375)
T 3i09_A 82 ATALSMNQVAAEKKKVYINIGAG--ADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFG--KALE 157 (375)
T ss_dssp HHHHHHHHHHHHHTCEEEECSCC--CGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHH
T ss_pred HHHHHHHHHHHHcCceEEEeCCC--chhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecccHHH--HHHH
Confidence 99999999999999999999888 788877 478999999999999999999999999999999999999999 8999
Q ss_pred HHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEe
Q 006683 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (635)
Q Consensus 187 ~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~ 266 (635)
+.+++.+++.| ++++....++.+. .|+...++++++.++|+|++ .+...++..+++++++.|+..+. .++.
T Consensus 158 ~~~~~~~~~~G-~~v~~~~~~~~~~------~d~~~~l~~i~~~~~d~v~~-~~~~~~~~~~~~~~~~~g~~~~~-~i~g 228 (375)
T 3i09_A 158 KNTADVVKANG-GKVLGEVRHPLSA------SDFSSFLLQAQSSKAQILGL-ANAGGDTVNAIKAAKEFGITKTM-KLAA 228 (375)
T ss_dssp HHHHHHHHHTT-CEEEEEEEECTTC------SCCHHHHHHHHHTCCSEEEE-ECCHHHHHHHHHHHHHTTGGGTC-EEEE
T ss_pred HHHHHHHHHcC-CEEeeeeeCCCCC------ccHHHHHHHHHhCCCCEEEE-ecCchhHHHHHHHHHHcCCCcCc-eEEe
Confidence 99999999999 9999888887665 56889999999999999999 99999999999999999998765 4444
Q ss_pred eCchhhhhcccChhhhhhccceEEEEeecCCCCchhHHHHHHHHHhhccCCCCCCCCCCcchhhhHhhHHHHHHHHHHhh
Q 006683 267 TNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (635)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~ 346 (635)
.+.+........ .+..+|++...++.....|..++|.++|+++|. ..|+.+++.+|||++++++|++++
T Consensus 229 ~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g--------~~p~~~a~~~Yda~~~~~~Al~~a 297 (375)
T 3i09_A 229 LLMFINDVHALG---LETTQGLVLTDSWYWNRDQASRQWAQRYFAKMK--------KMPSSLQAADYSSVTTYLKAVQAA 297 (375)
T ss_dssp SSCCHHHHHHHC---HHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS--------SCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHhhhC---hhhhCCeeeeeeecCCCCHHHHHHHHHHHHHHC--------CCCcHHHHHHHHHHHHHHHHHHHh
Confidence 444433222111 145678877776655556889999999999984 457889999999999999999999
Q ss_pred cccCCChHHHHHHHHcCcccceeeeEEEeCCCCCCCCcEEEEEeeCCc
Q 006683 347 NYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKK 394 (635)
Q Consensus 347 ~~~~~~~~~l~~~l~~~~f~g~~G~v~F~~~g~~~~~~~~i~~~~~~~ 394 (635)
+. .+++.|+++|++++|+|++|.++|+++|++. ..+.|++++++.
T Consensus 298 g~--~~~~~l~~aL~~~~~~~~~G~~~f~~~g~~~-~~~~i~~v~~~~ 342 (375)
T 3i09_A 298 GS--TDSDKVMAQLKKMKIDDFYAKGYIRTDGSMI-HDMYLMEVKKPS 342 (375)
T ss_dssp TS--CCHHHHHHHHTTSCEESSSCEEEECTTSBEE-CCEEEEEECCGG
T ss_pred CC--CCHHHHHHHHhCCCccCCCCceEECCCCCee-eeeEEEEEeccc
Confidence 87 7999999999999999999999999999886 678899997643
No 21
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=100.00 E-value=1.6e-38 Score=330.10 Aligned_cols=336 Identities=14% Similarity=0.172 Sum_probs=288.7
Q ss_pred CCeEEEEEEeeCCCc---C-cHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCCh
Q 006683 32 EEVTKIGAIVDANSQ---M-GKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETW 107 (635)
Q Consensus 32 ~~~i~IG~i~p~s~~---~-g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s 107 (635)
+++|+||+++|+++. . |.....|+++|++++|..-.|++++++++|+++++..+.+.+++|+.+++|.+||||.+|
T Consensus 4 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~~~s 83 (379)
T 3n0w_A 4 TGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDVGGKALGQPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFDVVNS 83 (379)
T ss_dssp --CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHTTTEETTEECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEECCCH
T ss_pred CCcEEEEEEeCCccccccccCHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEcCCCc
Confidence 578999999999853 3 788999999999999532258999999999999999999999999966999999999999
Q ss_pred hhHHHHHHhhccCCccEEeecCCCCCCCCCC-CCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchH
Q 006683 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMS-RRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (635)
Q Consensus 108 ~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~-~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~ 186 (635)
..+.++++++...++|+|++.++ ++.+++ ..+||+||+.|++..++.++++++.++||++|++|+.++++| +...
T Consensus 84 ~~~~a~~~~~~~~~ip~i~~~~~--~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g--~~~~ 159 (379)
T 3n0w_A 84 GTALAINNLVKDKKKLAFITAAA--ADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYG--DLMN 159 (379)
T ss_dssp HHHHHHHHHHHHHTCEEEECSCC--CTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHH
T ss_pred HHHHHHHHHHHHcCceEEEcCCC--chhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecccchh--HHHH
Confidence 99999999999999999999888 788887 468999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEe
Q 006683 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (635)
Q Consensus 187 ~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~ 266 (635)
+.+++.+++.| ++++....++.+. .|+...++++++.++|+|++ .+...++..++++++++|+..+.+ ++.
T Consensus 160 ~~~~~~~~~~G-~~v~~~~~~~~~~------~d~~~~l~~i~~~~~d~v~~-~~~~~~~~~~~~~~~~~g~~~~~~-~~~ 230 (379)
T 3n0w_A 160 AAIRRELTAGG-GQIVGSVRFPFET------QDFSSYLLQAKASGAQLIVS-TSGGAANINIMKQAREFGLPSKTQ-KVG 230 (379)
T ss_dssp HHHHHHHHHHT-CEEEEEEEECTTC------CCCHHHHHHHHHHTCSEEEE-CCCHHHHHHHHHHHHHTTCSCSSC-EEE
T ss_pred HHHHHHHHHcC-CEEEEEEeCCCCC------CCHHHHHHHHHHCCCCEEEE-ecccchHHHHHHHHHHcCCCCCCc-EEE
Confidence 99999999999 9999888887665 56888999999999999999 999999999999999999987643 344
Q ss_pred eCch-hhhhcccChhhhhhccceEEEEeecCCCCchhHHHHHHHHHhhccCCCCCCCCCCcchhhhHhhHHHHHHHHHHh
Q 006683 267 TNTV-ANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGR 345 (635)
Q Consensus 267 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~ 345 (635)
+..+ ........ ....+|++...++.....|..++|.++|+++|. ..|+.+++.+||+++++++|+++
T Consensus 231 ~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g--------~~p~~~~~~~Yda~~~~~~Al~~ 299 (379)
T 3n0w_A 231 GMIDILTDVKSAG---LRVMQGQEYATSFYWNMDDRTRAFAKRFYAKMG--------KMPTNNQAGGYSAALQYLKAVNA 299 (379)
T ss_dssp CCBCCHHHHHHHC---HHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHS--------SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ecccchHHHHhhC---HHhhCCeEEEeeecCCCCHHHHHHHHHHHHHHC--------CCCChHHHHHHHHHHHHHHHHHH
Confidence 4332 22221111 245788877776655556889999999999984 45788999999999999999999
Q ss_pred hcccCCChHHHHHHHHcCcccceee-eEEEeCCCCCCCCcEEEEEeeCCc
Q 006683 346 LNYNISSPEMLLRQMLSSDFSGLSG-KIRFKDGELLNADTLRIVNVVGKK 394 (635)
Q Consensus 346 ~~~~~~~~~~l~~~l~~~~f~g~~G-~v~F~~~g~~~~~~~~i~~~~~~~ 394 (635)
++. .+++.|+++|++++|+++.| .++|+++|++. ..+.|++++++.
T Consensus 300 ag~--~~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~~-~~~~i~~~~~~~ 346 (379)
T 3n0w_A 300 IGS--KDPQKVFAYLKTIKFDDAVTRHGTLRPGGRLV-RDMYLVRAKKPE 346 (379)
T ss_dssp HTC--CCHHHHHHHHTTCCBCSSSCCSBEECTTSBEE-CCEEEEEECCGG
T ss_pred hCC--CCHHHHHHHHhcCCccccCCCceeECCCCCcc-cceEEEEEEchh
Confidence 987 89999999999999999988 49999999886 789999997654
No 22
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=100.00 E-value=4e-38 Score=324.33 Aligned_cols=343 Identities=15% Similarity=0.145 Sum_probs=294.7
Q ss_pred CeEEEEEEeeCCC---cCcHHHHHHHHHHHHhHhcCC--CCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCCh
Q 006683 33 EVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETW 107 (635)
Q Consensus 33 ~~i~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~--~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s 107 (635)
++|+||+++|+++ ..|.....|+++|++++|+++ +|++++++++|+++++..+.+.+++|+ +++|.+||||.++
T Consensus 1 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi~G~~~~l~~~d~~~~~~~~~~~~~~l~-~~~v~~iig~~~s 79 (356)
T 3ipc_A 1 MDVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGDDVSDPKQGISVANKFV-ADGVKFVVGHANS 79 (356)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBCEEEEEEECTTCHHHHHHHHHHHH-HTTCCEEEECSSH
T ss_pred CeEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHHHHHHHHHH-HCCCcEEEcCCCc
Confidence 3699999999985 357889999999999999998 489999999999999999999999999 5999999999999
Q ss_pred hhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH-HHCCCeEEEEEEEcCCCCCCcchH
Q 006683 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA-RKYNWRRVAAIYEDNVYGGDSGKL 186 (635)
Q Consensus 108 ~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l-~~~~w~~vaii~~~~~~g~~~~~~ 186 (635)
..+.++.+++...++|+|++.++ ++.+++..+|++||+.|++..++.++++++ +++||++|++|+.++++| +...
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~--~~~~ 155 (356)
T 3ipc_A 80 GVSIPASEVYAENGILEITPAAT--NPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYG--QGLA 155 (356)
T ss_dssp HHHHHHHHHHHTTTCEEEESSCC--CGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECSSHHH--HHHH
T ss_pred HHHHHHHHHHHhCCCeEEecCCC--CcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCCChHH--HHHH
Confidence 99999999999999999999988 788888778999999999999999999976 567999999999988899 8889
Q ss_pred HHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEe
Q 006683 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (635)
Q Consensus 187 ~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~ 266 (635)
+.+++.+++.| ++++....++... .++...++++++.++++|++ .+....+..+++++++.|+.. .|+.
T Consensus 156 ~~~~~~l~~~g-~~v~~~~~~~~~~------~d~~~~~~~l~~~~~d~v~~-~~~~~~a~~~~~~~~~~g~~~---~~~~ 224 (356)
T 3ipc_A 156 DETKKAANAAG-VTEVMYEGVNVGD------KDFSALISKMKEAGVSIIYW-GGLHTEAGLIIRQAADQGLKA---KLVS 224 (356)
T ss_dssp HHHHHHHHHTT-CCCSEEEECCTTC------CCCHHHHHHHHHTTCCEEEE-ESCHHHHHHHHHHHHHHTCCC---EEEE
T ss_pred HHHHHHHHHcC-CEEEEEEeeCCCC------CCHHHHHHHHHhcCCCEEEE-ccCchHHHHHHHHHHHCCCCC---cEEE
Confidence 99999999999 9988777776554 46788999999999999999 899999999999999999975 6777
Q ss_pred eCchhhhhcccChhhhhhccceEEEEeecCCCCchhHHHHHHHHHhhccCCCCCCCCCCcchhhhHhhHHHHHHHHHHhh
Q 006683 267 TNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (635)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~ 346 (635)
++.+.... .. .......+|++....+.+...|..++|.++|+++ . ..|+.++..+|||++++++|++++
T Consensus 225 ~~~~~~~~-~~-~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~-~--------~~p~~~~~~~yda~~~~~~al~~a 293 (356)
T 3ipc_A 225 GDGIVSNE-LA-SIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA-G--------FNPEAYTLYSYAAMQAIAGAAKAA 293 (356)
T ss_dssp CGGGCSHH-HH-HHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT-T--------CCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred eccccCHH-HH-HHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc-C--------CCcchhHHHHHHHHHHHHHHHHHh
Confidence 65543211 10 1122456788777665555568899999999886 3 246678999999999999999999
Q ss_pred cccCCChHHHHHHHHcCcccceeeeEEEeCCCCCCCCcEEEEEeeC---CceEEEEeecCC
Q 006683 347 NYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVG---KKYKELDFWLPN 404 (635)
Q Consensus 347 ~~~~~~~~~l~~~l~~~~f~g~~G~v~F~~~g~~~~~~~~i~~~~~---~~~~~vG~w~~~ 404 (635)
+. .+++.|.++|++.+|+|++|+++|+++|++....+.|+++++ |+|+.+..|.+.
T Consensus 294 g~--~~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~~ 352 (356)
T 3ipc_A 294 GS--VEPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSHH 352 (356)
T ss_dssp TC--CCHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSSEEEEEC----
T ss_pred CC--CCHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCcEEEEeccccc
Confidence 87 899999999999999999999999999999878999999984 999999998653
No 23
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=100.00 E-value=1.3e-37 Score=319.93 Aligned_cols=338 Identities=18% Similarity=0.233 Sum_probs=278.7
Q ss_pred CCeEEEEEEeeCCC---cCcHHHHHHHHHHHHhHhcCCC--CeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCC
Q 006683 32 EEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSR--NHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (635)
Q Consensus 32 ~~~i~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~~--g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (635)
+++||||+++|+|+ ..|.....|+++|+++||+.++ |++|+++++|++++|..+++++.+|+.++++.+|+||.+
T Consensus 5 ~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~Gr~ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~g~~~ 84 (353)
T 4gnr_A 5 EKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGIDGKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVGPAT 84 (353)
T ss_dssp -CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECCCS
T ss_pred CCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEecCCCCHHHHHHHHHHHHhhCCceEEecccc
Confidence 57899999999995 4578999999999999999984 799999999999999999999999998899999999999
Q ss_pred hhhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCC-CeEEEEEEEcC-CCCCCcc
Q 006683 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYN-WRRVAAIYEDN-VYGGDSG 184 (635)
Q Consensus 107 s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~-w~~vaii~~~~-~~g~~~~ 184 (635)
|..+.++++++...++|+|++.++ ++.+++. ++|+||+.|++..++.++++++.+.+ +++++++++++ +|| +.
T Consensus 85 s~~~~a~~~~~~~~~vp~i~~~~~--~~~l~~~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg--~~ 159 (353)
T 4gnr_A 85 SGATAAAVANATKAGVPLISPSAT--QDGLTKG-QDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYA--KG 159 (353)
T ss_dssp HHHHHHHHHHHHHTTCCEEESSCC--CTTTTTT-CTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEETTCHHH--HH
T ss_pred CcccceehhhhhccCcceEeeccc--ccccccC-CccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEcCchHHH--HH
Confidence 999999999999999999999988 7887753 58999999999999999999996654 45555555543 477 66
Q ss_pred hHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEE
Q 006683 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVW 264 (635)
Q Consensus 185 ~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~ 264 (635)
+.+.+.+ +.| .+++..+.++.+. .|++.+++++++.++|+|++ .+...++..++++++++|+.. .+
T Consensus 160 ~~~~~~~---~~g-~~vv~~~~~~~~~------~d~~~~l~~i~~~~~d~v~~-~~~~~~~~~~~~~~~~~g~~~---~~ 225 (353)
T 4gnr_A 160 IAKSFRE---SYK-GEIVADETFVAGD------TDFQAALTKMKGKDFDAIVV-PGYYNEAGKIVNQARGMGIDK---PI 225 (353)
T ss_dssp HHHHHHH---HCC-SEEEEEEEECTTC------CCCHHHHHHHHTSCCSEEEC-CSCHHHHHHHHHHHHHTTCCS---CE
T ss_pred HHHHHHH---HcC-CEEEEEEeeCCCC------CCHHHHHHHHHhcCCCEEEE-ecCcHHHHHHHHHHHHcCCCC---cE
Confidence 6665553 457 8899888888876 67999999999999999999 999999999999999999977 35
Q ss_pred EeeCchhhhhcccChhhhhhccceEEEEeecCC--CCchhHHHHHHHHHhhccCCCCCCCCCCcchhhhHhhHHHHHHHH
Q 006683 265 IVTNTVANALDSLNTTVISSMEGTLGIKSYYSD--DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEA 342 (635)
Q Consensus 265 i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~A 342 (635)
+..+.+.... ..........+|.+....+... ..|..++|.++|+++|. ..|+.++.++||+++++++|
T Consensus 226 ~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g--------~~p~~~a~~~Yda~~~la~A 296 (353)
T 4gnr_A 226 VGGDGFNGEE-FVQQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKYN--------EEPSTFAALAYDSVHLVANA 296 (353)
T ss_dssp EECGGGCSHH-HHHHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHHS--------SCCCHHHHHHHHHHHHHHHH
T ss_pred EEecccccch-hhhhhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHhC--------CCCChhHHHHHHHHHHHHHH
Confidence 5554433211 0011112455677766654333 34778899999999984 46788999999999999999
Q ss_pred HHhhcccCCChHHHHHHHHcC-cccceeeeEEEeCCCCCCCCcEEEEEeeCCceEEEEeec
Q 006683 343 IGRLNYNISSPEMLLRQMLSS-DFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWL 402 (635)
Q Consensus 343 l~~~~~~~~~~~~l~~~l~~~-~f~g~~G~v~F~~~g~~~~~~~~i~~~~~~~~~~vG~w~ 402 (635)
++++ .++..++++|+++ +|+|++|+++||++|++. ..+.++++++|+++.+....
T Consensus 297 i~~a----~~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~v~~Gk~~~~~~v~ 352 (353)
T 4gnr_A 297 AKGA----KNSGEIKDNLAXTKDFEGVTGQTSFDADHNTV-KTAYMMTMNNGKVEAAEVVK 352 (353)
T ss_dssp HTTC----SSHHHHHHHHHTCCCEEETTEEECCCTTSCCC-CCEEEEEEETTEEEEEEEEC
T ss_pred HhcC----CCHHHHHHHHHhcCCCccCceeEEECCCcCCc-CCeEEEEEECCEEEEEEEeC
Confidence 9866 3688999999987 699999999999999986 67889999999998876543
No 24
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=100.00 E-value=2.6e-37 Score=318.46 Aligned_cols=345 Identities=14% Similarity=0.175 Sum_probs=294.0
Q ss_pred CCeEEEEEEeeCCC---cCcHHHHHHHHHHHHhHhcCCC--CeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCC
Q 006683 32 EEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSR--NHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (635)
Q Consensus 32 ~~~i~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~~--g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (635)
.++|+||+++|+++ ..+.....|+++|++++|++++ |++++++++|+++++..+.+.+++++.+++|.+|||+.+
T Consensus 2 ~~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 81 (358)
T 3hut_A 2 SLALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDFS 81 (358)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECSS
T ss_pred CccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEcCCC
Confidence 46899999999985 3578899999999999999984 799999999999999999999999997899999999999
Q ss_pred hhhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchH
Q 006683 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (635)
Q Consensus 107 s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~ 186 (635)
+..+.++.+.+...++|+|++.++ ++.+++.. |++||+.|++..++..+++++.+.||++|++|+.++.+| +...
T Consensus 82 s~~~~~~~~~~~~~~iP~v~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~--~~~~ 156 (358)
T 3hut_A 82 STVSMAAGSIYGKEGMPQLSPTAA--HPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWG--LSSA 156 (358)
T ss_dssp HHHHHHHHHHHHHHTCCEEESSCC--CGGGTTSC-TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHH
T ss_pred cHHHHHHHHHHHHCCCcEEecCCC--CcccccCC-CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCcHHH--HHHH
Confidence 999999999999999999999888 77777655 999999999999999999999888999999999988899 8889
Q ss_pred HHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEe
Q 006683 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (635)
Q Consensus 187 ~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~ 266 (635)
+.+++.+++.| ++++....++... .++...++++++.++++|++ .++...+..+++++++.|+.. .|++
T Consensus 157 ~~~~~~l~~~g-~~v~~~~~~~~~~------~~~~~~~~~l~~~~~d~i~~-~~~~~~a~~~~~~~~~~g~~~---p~~~ 225 (358)
T 3hut_A 157 QAFRKAFELRG-GAVVVNEEVPPGN------RRFDDVIDEIEDEAPQAIYL-AMAYEDAAPFLRALRARGSAL---PVYG 225 (358)
T ss_dssp HHHHHHHHHTT-CEEEEEEEECTTC------CCCHHHHHHHHHHCCSEEEE-ESCHHHHHHHHHHHHHTTCCC---CEEE
T ss_pred HHHHHHHHHcC-CEEEEEEecCCCC------ccHHHHHHHHHhcCCCEEEE-ccCchHHHHHHHHHHHcCCCC---cEEe
Confidence 99999999999 9998877776654 45778899999889999999 999989999999999999965 5777
Q ss_pred eCchhhhhcccChhhhhhccceEEEEeecCC-CCchhHHHHHHHHHhhccCCCCCCCCCCcchhhhHhhHHHHHHHHHHh
Q 006683 267 TNTVANALDSLNTTVISSMEGTLGIKSYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGR 345 (635)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~ 345 (635)
.+.+.... .. .......+|++...++.+. ..|..++|.++|+++|. ..|+.++..+|||++++++|+++
T Consensus 226 ~~~~~~~~-~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--------~~p~~~~~~~yda~~~~~~al~~ 295 (358)
T 3hut_A 226 SSALYSPK-FI-DLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLYG--------AIPTLFAAHGYDAVGIMLAAVGR 295 (358)
T ss_dssp CGGGCSHH-HH-HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHS--------SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccCHH-HH-HHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHHC--------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 66543211 11 1122457888877765543 45789999999999884 36788999999999999999999
Q ss_pred hcccCCChHH-HHHHHHcC-cccceeeeEEEeCCCCCCCCcEEEEEeeCCceEEEEeecCC
Q 006683 346 LNYNISSPEM-LLRQMLSS-DFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPN 404 (635)
Q Consensus 346 ~~~~~~~~~~-l~~~l~~~-~f~g~~G~v~F~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~ 404 (635)
++. .+++. +.++|+++ +|+|++|+++|+++|++....+.|+++++|+++.+...++.
T Consensus 296 ag~--~~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~G~~~~~~~~~~~ 354 (358)
T 3hut_A 296 AGP--EVTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDFRVIDREGHH 354 (358)
T ss_dssp HCT--TCCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEETTEEEEC------
T ss_pred hCC--CChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEECCEEEEecccccc
Confidence 987 68888 99999999 99999999999999998558899999999999988776554
No 25
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=100.00 E-value=3.1e-37 Score=320.05 Aligned_cols=345 Identities=13% Similarity=0.183 Sum_probs=296.5
Q ss_pred CCeEEEEEEeeCCC---cCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChh
Q 006683 32 EEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (635)
Q Consensus 32 ~~~i~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (635)
.++|+||+++|+++ ..|.....|+++|++++|..-+|++++++++|+++++..+.+.+++++.+++|.+|||+.++.
T Consensus 14 ~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~ng~~~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~ 93 (375)
T 4evq_A 14 AGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGKLGGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIGTVHSG 93 (375)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTTTEETTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEECSSHH
T ss_pred CCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhCCCcCCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEcCCccH
Confidence 46899999999985 457789999999999999322689999999999999999999999999657999999999999
Q ss_pred hHHHHHHhhccCCccEEeecCCCCCCCCCCC-CCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHH
Q 006683 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSR-RWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLA 187 (635)
Q Consensus 109 ~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~-~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~ 187 (635)
.+..+.+++...++|+|++.++ ++.+.+. .+|++||+.|++..++..+++++.++||++|++|+.++.+| +...+
T Consensus 94 ~~~~~~~~~~~~~iP~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~--~~~~~ 169 (375)
T 4evq_A 94 VAMAMVKIAREDGIPTIVPNAG--ADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAG--EEMVS 169 (375)
T ss_dssp HHHHHHHHHHHHCCCEEESSCC--CGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHH
T ss_pred HHHHHHHHHHHcCceEEecCCC--ChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecCchHH--HHHHH
Confidence 9999999999999999999988 7878774 58999999999999999999999999999999999998899 88899
Q ss_pred HHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEee
Q 006683 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (635)
Q Consensus 188 ~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~~ 267 (635)
.+++.+++.| ++++....++... .++...++++++.++++|++ .+....+..+++++++.|+.. .|+.+
T Consensus 170 ~~~~~l~~~G-~~v~~~~~~~~~~------~d~~~~~~~l~~~~~dai~~-~~~~~~a~~~~~~~~~~g~~v---p~~~~ 238 (375)
T 4evq_A 170 GFKKSFTAGK-GEVVKDITIAFPD------VEFQSALAEIASLKPDCVYA-FFSGGGALKFIKDYAAANLGI---PLWGP 238 (375)
T ss_dssp HHHHHHHHTT-CEEEEEEEECTTC------CCCHHHHHHHHHHCCSEEEE-ECCTHHHHHHHHHHHHTTCCC---CEEEE
T ss_pred HHHHHHHHcC-CeEEEEEecCCCC------ccHHHHHHHHHhcCCCEEEE-ecCcchHHHHHHHHHHcCCCc---eEEec
Confidence 9999999999 9998877777654 45778999999889999999 888999999999999999874 45555
Q ss_pred CchhhhhcccChhhhhhccceEEEEeecCC-CCchhHHHHHHHHHhhccCCCCCCCCCCcchhhhHhhHHHHHHHHHHhh
Q 006683 268 NTVANALDSLNTTVISSMEGTLGIKSYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (635)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~ 346 (635)
+ +... ... .......+|++...++.+. ..|..++|.++|+++|. ..|+.++..+|||++++++|++++
T Consensus 239 ~-~~~~-~~~-~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~--------~~p~~~~~~~yda~~~~~~al~~~ 307 (375)
T 4evq_A 239 G-FLTD-GVE-AAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAYK--------IPPDVFAVQGWDAGQLLDAGVKAV 307 (375)
T ss_dssp G-GGTT-TTH-HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHS--------SCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred C-cCCH-HHH-HhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHHC--------CCCcHHHHHHHHHHHHHHHHHHHh
Confidence 4 3211 111 1122467888877665443 35789999999999884 467789999999999999999999
Q ss_pred cccCCChHHHHHHHHcCcccceeeeEEEeCCCCCCCCcEEEEEeeCCceEEEEeecC
Q 006683 347 NYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLP 403 (635)
Q Consensus 347 ~~~~~~~~~l~~~l~~~~f~g~~G~v~F~~~g~~~~~~~~i~~~~~~~~~~vG~w~~ 403 (635)
+..+.+++.|+++|++++|+|++|+++|+++|++. ..+.|+++++++++.|+.+.+
T Consensus 308 g~~~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~ 363 (375)
T 4evq_A 308 GGDVAKRKELNAAMAAASFASPRGPFKLSAAHNPV-QNFYLRELKGGKSVNLGLAAP 363 (375)
T ss_dssp TTCTTCHHHHHHHHHTCEEEETTEEEEBCTTSCBC-CCEEEEEEETTEEEEEEEEEC
T ss_pred CCCCCCHHHHHHHHhcCCcccCCcceeECCCCCcc-ccEEEEEEECCCcEEeeehhh
Confidence 86447899999999999999999999999999986 689999999999999999855
No 26
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=7.5e-38 Score=321.00 Aligned_cols=321 Identities=18% Similarity=0.249 Sum_probs=246.5
Q ss_pred CCeEEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEe-cCCCCHHHHHHHHHHHhhcCCeEEEEcC-CChhh
Q 006683 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIR-DHNRDPFQAATAAQELINKEKVKVIAGM-ETWEE 109 (635)
Q Consensus 32 ~~~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~-D~~~~~~~a~~~~~~li~~~~v~aiiG~-~~s~~ 109 (635)
+..+.||+|+..+.. +.+++.|++..|.-.+..++..++. .+.+||..+...+|+++...+|.+|||+ .++..
T Consensus 2 ~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s~~~ 76 (364)
T 3qel_B 2 PPSIGIAVILVGTSD-----EVAIKDAHEKDDFHHLSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDTDQE 76 (364)
T ss_dssp CCEEEEEEEEESSCC-----HHHHTC---------CCSEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEEEESSCCT
T ss_pred CCceEEEEEEcccch-----hhhhccccCccccccCCccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEecCCCCch
Confidence 457999999977653 7799999999997765567776544 4778999999999999977889888854 44443
Q ss_pred HHH--HHHhhccCCccEEeecCCCCCC-CCCC-CCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcch
Q 006683 110 TAV--VAEIASRVQVPILSFAAPAVTP-LSMS-RRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (635)
Q Consensus 110 ~~~--v~~~~~~~~ip~Is~~~~~~~~-~l~~-~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~ 185 (635)
+.+ ++.+++.++||+|+++++ ++ .|++ .+||++||+.|++..++.++++++++|||++|++||+++ .|
T Consensus 77 a~a~~v~~i~~~~~iP~IS~~at--~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d~-~g----- 148 (364)
T 3qel_B 77 AIAQILDFISAQTLTPILGIHGG--SSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYF-PG----- 148 (364)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEGG--GGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESC-TT-----
T ss_pred HHHHHHHHHHhccCCCEEEeecC--CCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEEEEeCC-cc-----
Confidence 444 899999999999999999 88 8998 479999999999999999999999999999999999986 55
Q ss_pred HHHHHHHHhcc--CC-eEEEEEeeeCCCCCCCCchHHHHHHH-HhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCC
Q 006683 186 LALLAEALQNV--SS-SEIQSRLVLPPISSISDPKEAVRGEL-KKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKD 261 (635)
Q Consensus 186 ~~~~~~~l~~~--g~-~~v~~~~~~~~~~~~~d~~~~~~~~l-~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~ 261 (635)
.+.+.+.+++. |. +|+.+...++..... .+++..+ +++++.++++||+ +++.+.+..++++|.++||++++
T Consensus 149 ~~~~~~~l~~~~~~~~ici~~~~~i~~~~~~----~~~~~~l~~~i~~~~a~ViIv-~~~~~~~~~ll~~a~~~g~~~~~ 223 (364)
T 3qel_B 149 YQDFVNKIRSTIENSFVGWELEEVLLLDMSL----DDGDSKIQNQLKKLQSPIILL-YCTKEEATYIFEVANSVGLTGYG 223 (364)
T ss_dssp HHHHHHHHHHHHHTCSSCCEEEEEEEECTTS----CSSSCHHHHHHTTCCCSEEEE-ESCHHHHHHHHHHHHTTTCSSTT
T ss_pred HHHHHHHHHHHhhccccceEEEEEEccCCCc----ccHHHHHHHHHHccCCcEEEE-EcCHHHHHHHHHHHHHcCCCCCC
Confidence 44555555544 40 477665554433211 3466777 6899899999999 99999999999999999999999
Q ss_pred eEEEeeCchhhhhcccChhhhhhccceEEEEeecCCCCchhHHHHHHHHHhhccCCCCCCCCCCcchhhhHhhHHHHHHH
Q 006683 262 SVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITE 341 (635)
Q Consensus 262 ~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~ 341 (635)
|+||+++.+....+... .....|++++..+. |+ ....++.||||+++|+
T Consensus 224 y~wI~t~~~~~~~~~~~---~~~~~g~~~~~~~~-------------W~---------------~~~~~~~yDaV~~~A~ 272 (364)
T 3qel_B 224 YTWIVPSLVAGDTDTVP---SEFPTGLISVSYDE-------------WD---------------YGLPARVRDGIAIITT 272 (364)
T ss_dssp CEEEECHHHHCSTTCCC---TTSCTTCEECCBCT-------------TT---------------SCHHHHHHHHHHHHHH
T ss_pred eEEEEecccccCccccc---ccCCCceEEEeecc-------------ch---------------hhHHHHHHHHHHHHHH
Confidence 99999987653333221 13456777765431 10 1245789999999999
Q ss_pred HHHhhcc-----------c-------CCChHHHHHHHHcCcccceeeeEEEeCCCCCCCCcEEEEEee-CCceEEEEeec
Q 006683 342 AIGRLNY-----------N-------ISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV-GKKYKELDFWL 402 (635)
Q Consensus 342 Al~~~~~-----------~-------~~~~~~l~~~l~~~~f~g~~G~v~F~~~g~~~~~~~~i~~~~-~~~~~~vG~w~ 402 (635)
|++++.. | +.+|..|.++|++++|+|+ ++.||++|++.+..|+|++++ +.++++||.|+
T Consensus 273 A~~~~~~~~~~i~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl~~~~~~~~VG~W~ 350 (364)
T 3qel_B 273 AASDMLSEHSFIPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILLNKERKWERVGKWK 350 (364)
T ss_dssp HHHHHHTTTSCCCCCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEECTTSCEEEEEEEC
T ss_pred HHHHHHhccCCCCCCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEEEEcCCCCcEEEEEEC
Confidence 9987643 2 2367789999999999998 999999999999999999998 67899999998
Q ss_pred C
Q 006683 403 P 403 (635)
Q Consensus 403 ~ 403 (635)
.
T Consensus 351 ~ 351 (364)
T 3qel_B 351 D 351 (364)
T ss_dssp S
T ss_pred C
Confidence 4
No 27
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=100.00 E-value=3.7e-37 Score=315.78 Aligned_cols=338 Identities=14% Similarity=0.176 Sum_probs=286.6
Q ss_pred CeEEEEEEeeCCCc---CcHHHHHHHHHHHHhHhcCC--CCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCCh
Q 006683 33 EVTKIGAIVDANSQ---MGKQAITAMKIAVQNFNSDS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETW 107 (635)
Q Consensus 33 ~~i~IG~i~p~s~~---~g~~~~~a~~~Av~~iN~~~--~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s 107 (635)
++|+||+++|+++. .+.....|+++|++++|+++ .|++|+++++|+++++..+.+.+++++ +++|.+|||+.++
T Consensus 1 ~~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi~G~~l~l~~~d~~~~~~~~~~~~~~l~-~~~v~~iig~~~s 79 (346)
T 1usg_A 1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIV-NDGIKYVIGHLCS 79 (346)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHH-HTTCCEEECCSSH
T ss_pred CcEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCHHHHHHHHHHHH-hCCCCEEEcCCCc
Confidence 36999999999854 47788999999999999998 479999999999999999999999999 6899999999999
Q ss_pred hhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH-HHCCCeEEEEEEEcCCCCCCcchH
Q 006683 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA-RKYNWRRVAAIYEDNVYGGDSGKL 186 (635)
Q Consensus 108 ~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l-~~~~w~~vaii~~~~~~g~~~~~~ 186 (635)
..+.++.+.+...++|+|++.++ ++.+++..+|++||+.|++..++..+++++ +++||++|++|+.++.+| ....
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~~~~~--~~~~ 155 (346)
T 1usg_A 80 SSTQPASDIYEDEGILMISPGAT--NPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYG--EGLA 155 (346)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCC--CGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHH--HHHH
T ss_pred HHHHHHHHHHHHCCCeEEeeCCC--ChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEECCCchH--HHHH
Confidence 88888899999999999999887 777776557999999999999999999998 557999999999988888 8888
Q ss_pred HHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEe
Q 006683 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (635)
Q Consensus 187 ~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~ 266 (635)
+.+++.+++.| ++++....++... .++...++++++.++++|++ .+....+..+++++++.|+.. .|+.
T Consensus 156 ~~~~~~l~~~g-~~v~~~~~~~~~~------~d~~~~~~~l~~~~~d~i~~-~~~~~~a~~~~~~~~~~g~~~---~~~~ 224 (346)
T 1usg_A 156 RSVQDGLKAAN-ANVVFFDGITAGE------KDFSALIARLKKENIDFVYY-GGYYPEMGQMLRQARSVGLKT---QFMG 224 (346)
T ss_dssp HHHHHHHHHTT-CCEEEEEECCTTC------CCCHHHHHHHHHTTCCEEEE-ESCHHHHHHHHHHHHHTTCCC---EEEE
T ss_pred HHHHHHHHHcC-CEEEEEeccCCCC------cCHHHHHHHHHhcCCCEEEE-cCcchHHHHHHHHHHHcCCCC---eEEe
Confidence 99999999999 9998766665543 34678889998889999999 888888999999999999975 5887
Q ss_pred eCchhhhhcccChhhhhhccceEEEEeecCCCCchhHHHHHHHHHhhccCCCCCCCCCCcchhhhHhhHHHHHHHHHHhh
Q 006683 267 TNTVANALDSLNTTVISSMEGTLGIKSYYSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRL 346 (635)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~ 346 (635)
++.+... ... .......+|++...++.....|..++|.++|+++|. ..++.++..+|||++++++|++++
T Consensus 225 ~~~~~~~-~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~--------~~~~~~~~~~yda~~~~~~al~~~ 294 (346)
T 1usg_A 225 PEGVGNA-SLS-NIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKK--------DPSGPYVWITYAAVQSLATALERT 294 (346)
T ss_dssp CGGGCCT-THH-HHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTTC--------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcH-HHH-HHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHhC--------CCCchhHHHHHHHHHHHHHHHHHh
Confidence 7655321 110 111245688887766544445788999999988773 356778999999999999999999
Q ss_pred cccCCChHHHHHHHHcCcccceeeeEEEeCCCCCCCCcEEEEEee-CCceEEE
Q 006683 347 NYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVV-GKKYKEL 398 (635)
Q Consensus 347 ~~~~~~~~~l~~~l~~~~f~g~~G~v~F~~~g~~~~~~~~i~~~~-~~~~~~v 398 (635)
+. .+++.|+++|++.+|+|++|+++|+++|++....+.+++++ +|+++.+
T Consensus 295 g~--~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~~~~ 345 (346)
T 1usg_A 295 GS--DEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKA 345 (346)
T ss_dssp CC--CCHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEEEC
T ss_pred CC--CCHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEEEec
Confidence 87 78999999999999999999999999999876789999999 8888765
No 28
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=100.00 E-value=4.8e-37 Score=317.79 Aligned_cols=345 Identities=22% Similarity=0.293 Sum_probs=293.5
Q ss_pred CCeEEEEEEeeCCCc---CcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChh
Q 006683 32 EEVTKIGAIVDANSQ---MGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (635)
Q Consensus 32 ~~~i~IG~i~p~s~~---~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (635)
.++|+||+++|+++. .|.....|+++|++++|..-+|++|+++++|+++++..+.+.+++++.+++|.+||||.++.
T Consensus 4 ~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~~i~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~~~s~ 83 (368)
T 4eyg_A 4 EDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGDTVAGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGFGITP 83 (368)
T ss_dssp CCEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCSEETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHH
T ss_pred CCcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCCCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECCCccH
Confidence 578999999999853 47789999999999998633689999999999999999999999999669999999999999
Q ss_pred hHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHH
Q 006683 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (635)
Q Consensus 109 ~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~ 188 (635)
.+.++++++...++|+|++.++ ++.+++. +||+||+.|++..++.++++++.++||++|++|+.++.+| +...+.
T Consensus 84 ~~~~~~~~~~~~~ip~i~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~g--~~~~~~ 158 (368)
T 4eyg_A 84 AALAAAPLATQAKVPEIVMAAG--TSIITER-SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPG--NDALAF 158 (368)
T ss_dssp HHHHHHHHHHHHTCCEEESSCC--CGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHHH
T ss_pred HHHHHHHHHHhCCceEEeccCC--ChhhccC-CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCchHh--HHHHHH
Confidence 9999999999999999999888 6777665 7999999999999999999999999999999999998898 888999
Q ss_pred HHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEeeC
Q 006683 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268 (635)
Q Consensus 189 ~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~ 268 (635)
+++.+++.| ++++....++.+. .++...++++++.++++|++ .+....+..+++++++.|+.++.+.|++++
T Consensus 159 ~~~~l~~~g-~~v~~~~~~~~~~------~d~~~~~~~l~~~~~d~v~~-~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~ 230 (368)
T 4eyg_A 159 FKERFTAGG-GEIVEEIKVPLAN------PDFAPFLQRMKDAKPDAMFV-FVPAGQGGNFMKQFAERGLDKSGIKVIGPG 230 (368)
T ss_dssp HHHHHHHTT-CEEEEEEEECSSS------CCCHHHHHHHHHHCCSEEEE-ECCTTCHHHHHHHHHHTTGGGTTCEEEEET
T ss_pred HHHHHHHcC-CEEEEEEeCCCCC------CcHHHHHHHHHhcCCCEEEE-eccchHHHHHHHHHHHcCCCcCCceEEecC
Confidence 999999999 9998888777654 46888999999999999999 888889999999999999987667888876
Q ss_pred chh--hhhcccChhhhhhccceEEEEeecCC-CCchhHHHHHHHHHhhccCCCCCCCCCCcchhhhHhhHHHHHHHHHHh
Q 006683 269 TVA--NALDSLNTTVISSMEGTLGIKSYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGR 345 (635)
Q Consensus 269 ~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~ 345 (635)
.+. ...... ....+|++...++... ..|..++|.++| ++|.. ..|+.++..+|||++++++|+++
T Consensus 231 ~~~~~~~~~~~----g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~~-------~~p~~~~~~~yda~~~~~~al~~ 298 (368)
T 4eyg_A 231 DVMDDDLLNSM----GDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKEFG-------QRPGFMAVGGYDGIHLVFEALKK 298 (368)
T ss_dssp TTTCHHHHTTC----CGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHHHS-------SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHhh----hhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHhCC-------CCCChHHHHHHHHHHHHHHHHHH
Confidence 432 122211 1456788777665433 357899999999 88742 35778999999999999999999
Q ss_pred hcccCCChHHHHHHHHcCcccceeeeEEEe-CCCCCCCCcEEEEEee--CCceEEE--EeecC
Q 006683 346 LNYNISSPEMLLRQMLSSDFSGLSGKIRFK-DGELLNADTLRIVNVV--GKKYKEL--DFWLP 403 (635)
Q Consensus 346 ~~~~~~~~~~l~~~l~~~~f~g~~G~v~F~-~~g~~~~~~~~i~~~~--~~~~~~v--G~w~~ 403 (635)
++. ..+++.|+++|++++|+|++|+++|+ ++|++. ..+.|.+++ +|+++.+ ++|.+
T Consensus 299 ~g~-~~~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~-~~~~i~~~~~~~G~~~~v~~~~~~~ 359 (368)
T 4eyg_A 299 TGG-KADGDSLIAAMKGMKWESPRGPISIDPETRDIV-QNIYIRKVEKVDGELYNIEFAKFDA 359 (368)
T ss_dssp TTT-CCSHHHHHHHHTTCEEEETTEEEEECTTTCCEE-EEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred hCC-CCCHHHHHHHHHcCCcccCCCCeEECcccCCcc-cceEEEEEEecCCeEEEEEeecccc
Confidence 984 27999999999999999999999999 666664 788999998 7888554 45543
No 29
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=100.00 E-value=4.8e-37 Score=320.56 Aligned_cols=350 Identities=14% Similarity=0.153 Sum_probs=292.4
Q ss_pred CCeEEEEEEeeCCC---cCcHHHHHHHHHHHHhHhcCCC--CeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCC
Q 006683 32 EEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSR--NHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (635)
Q Consensus 32 ~~~i~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~~--g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (635)
.++|+||+++|+++ ..|.....|+++|++++|++++ |++++++++|+++++..+.+.+++|+.+++|.+||| .+
T Consensus 5 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~iig-~~ 83 (392)
T 3lkb_A 5 QQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVPGVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLS-YA 83 (392)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSSTTEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEEE-CC
T ss_pred CCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcCCeEeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEEe-CC
Confidence 46899999999985 3577899999999999999874 799999999999999999999999996679999999 68
Q ss_pred hhhHHHHHHhhccCCccEEeecCCCCCCCCCC-CCCceEEEEecCcHHHHHHHHHHHHH-CCCeEEEEEEEcCCCCCCcc
Q 006683 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMS-RRWPYLIRMASNDSEQMKCIADLARK-YNWRRVAAIYEDNVYGGDSG 184 (635)
Q Consensus 107 s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~-~~~p~~~r~~p~~~~~~~al~~~l~~-~~w~~vaii~~~~~~g~~~~ 184 (635)
+..+.++.+++...+||+|++.++ + .+.+ ..+|++||+.|++..++.++++++.+ +||++|++|+.+++|| +.
T Consensus 84 s~~~~~~~~~~~~~~iP~i~~~~~--~-~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~g--~~ 158 (392)
T 3lkb_A 84 TGANLQLKPLIQELRIPTIPASMH--I-ELIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFG--RA 158 (392)
T ss_dssp HHHHHHHHHHHHHHTCCEEESCCC--G-GGGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHH--HT
T ss_pred cHHHHHHHHHHHhCCceEEecccC--h-hhccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeCCchh--hh
Confidence 888889999999999999998665 3 3444 56899999999999999999999866 6999999999999899 88
Q ss_pred hHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEE
Q 006683 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVW 264 (635)
Q Consensus 185 ~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~ 264 (635)
..+.+++.+++.| ++++....++... .++...++++++.++++|++ .+....+..++++++++|+.. .|
T Consensus 159 ~~~~~~~~l~~~G-~~v~~~~~~~~~~------~d~~~~~~~l~~~~~dav~~-~~~~~~a~~~~~~~~~~g~~~---~~ 227 (392)
T 3lkb_A 159 PVEDARKAARELG-LQIVDVQEVGSGN------LDNTALLKRFEQAGVEYVVH-QNVAGPVANILKDAKRLGLKM---RH 227 (392)
T ss_dssp THHHHHHHHHHHT-CEEEEEEECCTTC------CCCHHHHHHHHHTTCCEEEE-ESCHHHHHHHHHHHHHTTCCC---EE
T ss_pred HHHHHHHHHHHcC-CeEEEEEeeCCCC------cCHHHHHHHHHhcCCCEEEE-ecCcchHHHHHHHHHHcCCCc---eE
Confidence 9999999999999 9998887777654 46888999999999999999 899999999999999999965 66
Q ss_pred EeeCchhhhhcccChhhhhhccceEEEEeecC-CCCchhHHHHHHHHHhhccCCCCCCCCCCcc----hhhhHhhHHHHH
Q 006683 265 IVTNTVANALDSLNTTVISSMEGTLGIKSYYS-DDSSPYKEFSALFRRNFTSEYPEEDHFHPSI----HALRAHDSIKII 339 (635)
Q Consensus 265 i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~----~~~~~yDav~~~ 339 (635)
+.++.+... ... .......+|++....+.. ...+..++|.++|+++|.. .|.. ++..+|||++++
T Consensus 228 ~~~~~~~~~-~~~-~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--------~p~~~~~~~~~~~yda~~~~ 297 (392)
T 3lkb_A 228 LGAHYTGGP-DLI-ALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKYGR--------PENFIESVNYTNGMLAAAIA 297 (392)
T ss_dssp EECGGGCSH-HHH-HHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHTTC--------CHHHHTCHHHHHHHHHHHHH
T ss_pred EEecCcccH-HHH-HhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHhCC--------CcccccchhHHHHHHHHHHH
Confidence 666543211 111 112245788887776533 2235578999999998842 3333 378999999999
Q ss_pred HHHHHhhcc--cCCChHHHHHHHHcCc----cc-------ceeeeEEEeCCCCCCCCcEEEEEeeCCceEEEEeecCCCC
Q 006683 340 TEAIGRLNY--NISSPEMLLRQMLSSD----FS-------GLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFWLPNFG 406 (635)
Q Consensus 340 a~Al~~~~~--~~~~~~~l~~~l~~~~----f~-------g~~G~v~F~~~g~~~~~~~~i~~~~~~~~~~vG~w~~~~~ 406 (635)
++|+++++. ...+++.|+++|++++ |+ |++|+++|+++|++....+.|+++++++++.|+.|....+
T Consensus 298 ~~al~~ag~~~~~~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~~~~i~~~~~g~~~~v~~w~~~~~ 377 (392)
T 3lkb_A 298 VEAIRRAQERFKRITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEAKGGRFVPVTEPFTSAL 377 (392)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEEEETTEEEECSCCBCCHH
T ss_pred HHHHHHhhccCCCCCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcccEEEEEEeCCEEEEeccccchhH
Confidence 999999974 1378999999999987 98 9999999999888766789999999999999999987654
Q ss_pred Cc
Q 006683 407 FS 408 (635)
Q Consensus 407 ~~ 408 (635)
+.
T Consensus 378 ~~ 379 (392)
T 3lkb_A 378 FR 379 (392)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 30
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=100.00 E-value=1.5e-36 Score=314.44 Aligned_cols=331 Identities=15% Similarity=0.181 Sum_probs=270.6
Q ss_pred CCeEEEEEEeeCCCc---CcHHHHHHHHHHHHhHhc-CC--CCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCC
Q 006683 32 EEVTKIGAIVDANSQ---MGKQAITAMKIAVQNFNS-DS--RNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGME 105 (635)
Q Consensus 32 ~~~i~IG~i~p~s~~---~g~~~~~a~~~Av~~iN~-~~--~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~ 105 (635)
.++|+||+++|+++. .|.....|+++|++++|. .+ .|++|+++++|++++|..++..+++|+.+++|.+||||.
T Consensus 2 ~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~ 81 (374)
T 3n0x_A 2 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS 81 (374)
T ss_dssp --CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEETTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCcCCEEEEEEEecCCCCHHHHHHHHHHHHHhCCceEEEcCC
Confidence 367999999999953 578999999999999998 44 589999999999999999999999999778999999999
Q ss_pred ChhhHHHHHHhhccCCccEEeecCCCCCCCCCCC-CCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcc
Q 006683 106 TWEETAVVAEIASRVQVPILSFAAPAVTPLSMSR-RWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSG 184 (635)
Q Consensus 106 ~s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~-~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~ 184 (635)
+|..+.+++++++..++|+|++.++ ++.+++. .+||+||+.|++..++.+++.++++++| ++++|+.+++|| +.
T Consensus 82 ~s~~~~a~~~~~~~~~ip~i~~~~~--~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~~~g--~~ 156 (374)
T 3n0x_A 82 SSAAALADLPVAEENKKILIVEPAV--ADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQDYAFG--RD 156 (374)
T ss_dssp SHHHHHHHHHHHHHHTCCEEECSCC--CGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEESSHHH--HH
T ss_pred CcHHHHHHHHHHHHcCccEEEcCCC--chhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCCchHH--HH
Confidence 9999999999999999999998888 7888874 5899999999999999999977888888 899999999999 99
Q ss_pred hHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcC-----ceEEEEecCChhHHHHHHHHHHHcCCCC
Q 006683 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ-----SRVFIVLQASLDMTIHLFTEANRMGLVG 259 (635)
Q Consensus 185 ~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~-----~~vii~~~~~~~~~~~~l~~a~~~g~~~ 259 (635)
..+.+++.+++.| ++++....++.+. .|++.+++++++.+ +|+|++ ....... .+.++.+.++..
T Consensus 157 ~~~~~~~~~~~~G-~~vv~~~~~~~~~------~d~~~~l~~i~~~~~~~~~~d~v~~-~~~g~~~--~~~~~~~~~~~~ 226 (374)
T 3n0x_A 157 GVAAFKEALAKTG-ATLATEEYVPTTT------TDFTAVGQRLFDALKDKPGKKIIWV-IWAGGGD--PLTKLQDMDPKR 226 (374)
T ss_dssp HHHHHHHHHTTTT-CEEEEEEEECTTC------CCCHHHHHHHHHHHTTCSSEEEEEE-CCCSSSC--HHHHHHHTCGGG
T ss_pred HHHHHHHHHHHcC-CEEeeeecCCCCC------ccHHHHHHHHHhcCCCCCCCCEEEE-EecCCcH--HHHHHHHcchhh
Confidence 9999999999999 9999988888765 56899999999988 999998 6333211 234555555544
Q ss_pred CCeEEEeeCchhhhhcccChhhhhhccceEEEEeecCC--CCchhHHHHHHHHHhhccCCCCCCCCCCcchhhhHhhHHH
Q 006683 260 KDSVWIVTNTVANALDSLNTTVISSMEGTLGIKSYYSD--DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIK 337 (635)
Q Consensus 260 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~ 337 (635)
.++.++......... .......|..+...+... ..|..++|.++|+++|. ..|+.++..+||+++
T Consensus 227 ~g~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~g--------~~p~~~a~~~Yda~~ 293 (374)
T 3n0x_A 227 YGIELSTGGNILPAL-----AAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFN--------APPDFFTAGGFSAAM 293 (374)
T ss_dssp GTEEEEECCCCTTGG-----GGGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHHS--------SCCCHHHHHHHHHHH
T ss_pred cCCeeeeccccchhh-----hhhhhhcCccccceeccCCCCCHHHHHHHHHHHHHHC--------CCCChhHHHHHHHHH
Confidence 445554433221111 111344566655543222 35778999999999884 467889999999999
Q ss_pred HHHHHHHhhcccCCChHHHHHHHHcCcccceeeeEEEeCCCCCCCCcEEEEEeeC
Q 006683 338 IITEAIGRLNYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVG 392 (635)
Q Consensus 338 ~~a~Al~~~~~~~~~~~~l~~~l~~~~f~g~~G~v~F~~~g~~~~~~~~i~~~~~ 392 (635)
++++|++++++ .+++.|+++|++++|+|++|+++|++++++....+.|++++.
T Consensus 294 ~l~~Al~~ag~--~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~ 346 (374)
T 3n0x_A 294 AVVTAVQKAKS--TDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKV 346 (374)
T ss_dssp HHHHHHHHHTS--CCHHHHHHHHTTCEEEETTEEEEECTTTCBEECCEEEEEEEC
T ss_pred HHHHHHHHhCC--CCHHHHHHHHhcCCccCCCCCEEECcccCccccceEEEEEEe
Confidence 99999999987 899999999999999999999999965444457899999975
No 31
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=100.00 E-value=5.1e-36 Score=312.58 Aligned_cols=341 Identities=14% Similarity=0.160 Sum_probs=287.6
Q ss_pred CeEEEEEEeeCCC---cCcHHHHHHHHHHHHhHhcCC----CCe--EEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEc
Q 006683 33 EVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDS----RNH--KLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG 103 (635)
Q Consensus 33 ~~i~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~----~g~--~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG 103 (635)
++|+||+++|+++ ..|.....|+++|++++|+++ +|+ +|+++++|+++++..+.+.+++|+.+++|.+|||
T Consensus 3 ~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~iiG 82 (391)
T 3eaf_A 3 LTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAIIG 82 (391)
T ss_dssp EEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred ccEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEE
Confidence 6899999999995 357788999999999999986 467 9999999999999999999999997899999999
Q ss_pred CCChhhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHH-CCCeEEEEEEE-cCCCCC
Q 006683 104 METWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-YNWRRVAAIYE-DNVYGG 181 (635)
Q Consensus 104 ~~~s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~-~~w~~vaii~~-~~~~g~ 181 (635)
.++..+.++.+++...+||+|++.++ ++ +. .+|++||+.|++..++.++++++.+ +||++|++|+. ++++|
T Consensus 83 -~~s~~~~a~~~~~~~~~iP~i~~~~~--~~-~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~g- 155 (391)
T 3eaf_A 83 -WGTADTEKLSDQVDTDKITYISASYS--AK-LL--VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYS- 155 (391)
T ss_dssp -CCHHHHHHHHHHHHHHTCEEEESCCC--GG-GT--TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHH-
T ss_pred -cCcHHHHHHHHHHhhcCCeEEecccc--hh-hc--CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCChhH-
Confidence 68888999999999999999998766 43 43 5799999999999999999999976 69999999999 88899
Q ss_pred CcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHh--hhhcCceEEEEecCChhHHHHHHHHHHHcCCCC
Q 006683 182 DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKK--VQDKQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (635)
Q Consensus 182 ~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~--l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~ 259 (635)
+...+.+++.+++.| ++++....++... .++...+++ +++.++++|++ .++...+..++++++++|+..
T Consensus 156 -~~~~~~~~~~l~~~G-~~v~~~~~~~~~~------~d~~~~~~~~~l~~~~~dav~~-~~~~~~~~~~~~~~~~~g~~~ 226 (391)
T 3eaf_A 156 -RSPIGAIKKAAPSLG-LQVVGDYDLPLRA------TEADAERIAREMLAADPDYVWC-GNTISSCSLLGRAMAKVGLDA 226 (391)
T ss_dssp -HTTHHHHHHHTGGGT-EEEEEEEECCTTC------CHHHHHHHHHHHHTTCCSEEEE-CSCHHHHHHHHHHHHHHTCCC
T ss_pred -HHHHHHHHHHHHHcC-CceeeeeccCCCC------cCHHHHHHHHHHHHcCCCEEEE-ecCcHHHHHHHHHHHHCCCCc
Confidence 899999999999999 9999888777655 679999999 99999999999 999999999999999999976
Q ss_pred CCeEEEeeCchhhhhcccChhhhhhccc-eEEEEeec--C--CCCchhHHHHHHHHHhhccCCCCCCCCCC--cchhhhH
Q 006683 260 KDSVWIVTNTVANALDSLNTTVISSMEG-TLGIKSYY--S--DDSSPYKEFSALFRRNFTSEYPEEDHFHP--SIHALRA 332 (635)
Q Consensus 260 ~~~~~i~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~--~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 332 (635)
.++.++... ..... .......+| ++....+. + ...|. .+|.++|+++|.. ..| +.++..+
T Consensus 227 ---~~~~~~~~~-~~~~~-~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~-------~~p~~~~~~~~~ 293 (391)
T 3eaf_A 227 ---FLLTNVWGF-DERSP-QLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMNGV-------SEDQINLRVVQG 293 (391)
T ss_dssp ---EEEECGGGC-STTHH-HHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHTTC-------CGGGCCHHHHHH
T ss_pred ---eEEEeccCC-CHHHH-HhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHhCC-------CCcccccHHHHH
Confidence 455544321 11111 112245788 76666554 1 23454 6799999988841 223 4789999
Q ss_pred hhHHHHHHHHHHhh---c--ccCCChHHHHHHHHcCccc--ceee-eEEEeCCCCCCCCcEEEEEe-eCCceEEEEeecC
Q 006683 333 HDSIKIITEAIGRL---N--YNISSPEMLLRQMLSSDFS--GLSG-KIRFKDGELLNADTLRIVNV-VGKKYKELDFWLP 403 (635)
Q Consensus 333 yDav~~~a~Al~~~---~--~~~~~~~~l~~~l~~~~f~--g~~G-~v~F~~~g~~~~~~~~i~~~-~~~~~~~vG~w~~ 403 (635)
|||++++++|++++ + . .+++.|+++|++.+|+ |++| +++|++++++....+.|+++ ++|+++.++.|..
T Consensus 294 yda~~~l~~Al~~a~~~g~~~--~~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~~~G~~~~v~~~~~ 371 (391)
T 3eaf_A 294 FVNVWLLIKAIESVTSQDLQE--RGGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLGENGELQLMGKFEA 371 (391)
T ss_dssp HHHHHHHHHHHTTSCHHHHHH--HTHHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEECTTSSEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEEEEecCCEEEEeeeecC
Confidence 99999999999999 6 5 7899999999998898 9999 99999877766788999999 8999999999975
Q ss_pred C
Q 006683 404 N 404 (635)
Q Consensus 404 ~ 404 (635)
.
T Consensus 372 ~ 372 (391)
T 3eaf_A 372 P 372 (391)
T ss_dssp C
T ss_pred c
Confidence 3
No 32
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=100.00 E-value=4.3e-36 Score=310.06 Aligned_cols=339 Identities=10% Similarity=0.106 Sum_probs=286.4
Q ss_pred CCeEEEEEEeeCCC---cCcHHHHHHHHHHHHhHhcCCC--CeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCC
Q 006683 32 EEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSR--NHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (635)
Q Consensus 32 ~~~i~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~~--g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (635)
+++|+||+++|+++ ..|.....|+++|++++|++++ |++++++++|+++++..+.+.+++++.+++|.+||||.+
T Consensus 3 ~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 82 (364)
T 3lop_A 3 LADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGINGETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTVVG 82 (364)
T ss_dssp --CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEECCCC
T ss_pred CCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcCCeEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEecCC
Confidence 57899999999984 4577889999999999999984 799999999999999999999999996689999999999
Q ss_pred hhhHHHHHH--hhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcc
Q 006683 107 WEETAVVAE--IASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSG 184 (635)
Q Consensus 107 s~~~~~v~~--~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~ 184 (635)
+..+.++.+ ++...+||+|++.++ ++.+++ +|++||+.|++..++.++++++.++||++|++|+.++++| +.
T Consensus 83 s~~~~~~~~~~~~~~~~iP~v~~~~~--~~~~~~--~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~~~g--~~ 156 (364)
T 3lop_A 83 TANVEALMREGVLAEARLPLVGPATG--ASSMTT--DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALG--KE 156 (364)
T ss_dssp HHHHHHHHHTTHHHHHTCCEESCSCC--CGGGGS--CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHH--HH
T ss_pred CHHHHhhCchhhHHhcCCcEEEcccC--cHhhcc--CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCchhh--HH
Confidence 999999999 999999999999888 677766 7999999999999999999999999999999999999999 88
Q ss_pred hHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEE
Q 006683 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVW 264 (635)
Q Consensus 185 ~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~ 264 (635)
..+.+++.+++.| ++++....++... .++...++++++.++++|++ .++...+..++++++++|+.. .|
T Consensus 157 ~~~~~~~~~~~~G-~~v~~~~~~~~~~------~d~~~~~~~l~~~~~d~v~~-~~~~~~a~~~~~~~~~~g~~~---~~ 225 (364)
T 3lop_A 157 AITGVERTLKAHA-LAITAMASYPRNT------ANVGPAVDKLLAADVQAIFL-GATAEPAAQFVRQYRARGGEA---QL 225 (364)
T ss_dssp HHHHHHHHHHTTT-CCCSEEEEECTTS------CCCHHHHHHHHHSCCSEEEE-ESCHHHHHHHHHHHHHTTCCC---EE
T ss_pred HHHHHHHHHHHcC-CcEEEEEEecCCC------ccHHHHHHHHHhCCCCEEEE-ecCcHHHHHHHHHHHHcCCCC---eE
Confidence 8999999999999 9998777777654 46888999999999999999 899999999999999999976 46
Q ss_pred EeeCchhhhhcccChhhh-hhccceEEEEee---cCCCCchhHHHHHHHHHhhccCCCCCCCCCCcchhhhHhhHHHHHH
Q 006683 265 IVTNTVANALDSLNTTVI-SSMEGTLGIKSY---YSDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIIT 340 (635)
Q Consensus 265 i~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~---~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a 340 (635)
+..+.+... ... .... ...+|++..... .....|..++|.++|+++|... ..|+.++..+||++++++
T Consensus 226 i~~~~~~~~-~~~-~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~~p~~~a~~~yda~~~~~ 297 (364)
T 3lop_A 226 LGLSSIDPG-ILQ-KVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAKD------VDLSFRAVEGFVAAKVLA 297 (364)
T ss_dssp EECTTSCHH-HHH-HHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCTT------CCCCHHHHHHHHHHHHHH
T ss_pred EEeccCChH-HHH-HHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCCC------CCCChHHHHHHHHHHHHH
Confidence 666554321 111 1112 456787766532 1234578999999999887421 157789999999999999
Q ss_pred HHHHhhcccCCChHHHHHHHHcC-cccc-eeeeEEEeCCCCCCCCcEEEEEeeCCceE
Q 006683 341 EAIGRLNYNISSPEMLLRQMLSS-DFSG-LSGKIRFKDGELLNADTLRIVNVVGKKYK 396 (635)
Q Consensus 341 ~Al~~~~~~~~~~~~l~~~l~~~-~f~g-~~G~v~F~~~g~~~~~~~~i~~~~~~~~~ 396 (635)
+|+++++. ..+++.|+++|+++ +|+| .+|+++|++++++....+.|.+++++++.
T Consensus 298 ~al~~ag~-~~~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~~~~~~ 354 (364)
T 3lop_A 298 EAIRRAGP-KPTREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNGLV 354 (364)
T ss_dssp HHHHHHCS-SCCHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTSCE
T ss_pred HHHHHhCC-CCCHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEcCCCcc
Confidence 99999974 27999999999999 7999 99999999888776678888888776543
No 33
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=100.00 E-value=1.1e-35 Score=309.74 Aligned_cols=339 Identities=18% Similarity=0.248 Sum_probs=280.2
Q ss_pred CCeEEEEEEeeCCCc---CcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChh
Q 006683 32 EEVTKIGAIVDANSQ---MGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (635)
Q Consensus 32 ~~~i~IG~i~p~s~~---~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (635)
.++|+||+++|+++. .|.....|+++|++++| |++++++++|+++++..+.+.+++++.+++|.+||||.++.
T Consensus 25 ~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~----G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~ 100 (386)
T 3sg0_A 25 QAEIKIGITMSASGPGAALGQPQSKTVAALPKEIG----GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGSSLTP 100 (386)
T ss_dssp CCCEEEEEEECCSSTTHHHHHHHHHHGGGSCSEET----TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECCSSHH
T ss_pred CCceEEEEEeccCCchhhhcHHHHHHHHHHHHHcC----CEEEEEEEecCCCCHHHHHHHHHHHHhhcCceEEECCCCch
Confidence 367999999999854 46788999999999985 68999999999999999999999999667999999999999
Q ss_pred hHHHHHHhhccCCccEEeecCCCCCCCCC--CCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchH
Q 006683 109 ETAVVAEIASRVQVPILSFAAPAVTPLSM--SRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (635)
Q Consensus 109 ~~~~v~~~~~~~~ip~Is~~~~~~~~~l~--~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~ 186 (635)
.+.++.+++...++|+|++.++ ++.+. ...+|++||+.|++..++.++++++.++||++|++|+.++++| +...
T Consensus 101 ~~~~~~~~~~~~~ip~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~--~~~~ 176 (386)
T 3sg0_A 101 VSLPLIDIAAEAKTPLMTMAAA--AILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYG--EGYY 176 (386)
T ss_dssp HHHHHHHHHHHTTCCEEECCCC--GGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHH
T ss_pred hHHHHHHHHHhcCCeEEEecCC--CccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEecCchHH--HHHH
Confidence 9999999999999999999888 67776 3578999999999999999999999999999999999999999 8999
Q ss_pred HHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEe
Q 006683 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (635)
Q Consensus 187 ~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~ 266 (635)
+.+++.+++.| ++++....++... .++...++++++.++++|++ .++...+..+++++++.|+.. .++.
T Consensus 177 ~~~~~~l~~~g-~~v~~~~~~~~~~------~d~~~~~~~~~~~~~dav~~-~~~~~~a~~~~~~~~~~g~~~---~~~~ 245 (386)
T 3sg0_A 177 KVLAAAAPKLG-FELTTHEVYARSD------ASVTGQVLKIIATKPDAVFI-ASAGTPAVLPQKALRERGFKG---AIYQ 245 (386)
T ss_dssp HHHHHHHHHHT-CEECCCEEECTTC------SCCHHHHHHHHHTCCSEEEE-ECCSGGGHHHHHHHHHTTCCS---EEEC
T ss_pred HHHHHHHHHcC-CEEEEEEeeCCCC------CcHHHHHHHHHhcCCCEEEE-ecCcchHHHHHHHHHHcCCCC---cEEe
Confidence 99999999999 9998766676654 46788999999999999999 888889999999999999975 4666
Q ss_pred eCchhhhhcccChhhhhhccceEEEEee------cCCCC---chhHHHHHHHHHhhccCCCCCCCCCCcchhhhHhhHHH
Q 006683 267 TNTVANALDSLNTTVISSMEGTLGIKSY------YSDDS---SPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIK 337 (635)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~---~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~ 337 (635)
...+... ... .......+|++....+ .+..+ +..++|.++|+++|.. ..|+.++..+||+++
T Consensus 246 ~~~~~~~-~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-------~~p~~~~~~~yda~~ 316 (386)
T 3sg0_A 246 THGVATE-EFI-KLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANGG-------AAPTIFGVHLWDSMT 316 (386)
T ss_dssp CGGGCSH-HHH-HHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHTTT-------CCCCHHHHHHHHHHH
T ss_pred ccccCCH-HHH-HhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHhCC-------CCCChhHHHHHHHHH
Confidence 5544321 111 1122456787766532 12222 3578899999988852 146789999999999
Q ss_pred HHHHHHHhhccc-----CCChHHHHHHHHcC-cccceeeeEEEeCCCCC--CCCcEEEEEeeCCceEEE
Q 006683 338 IITEAIGRLNYN-----ISSPEMLLRQMLSS-DFSGLSGKIRFKDGELL--NADTLRIVNVVGKKYKEL 398 (635)
Q Consensus 338 ~~a~Al~~~~~~-----~~~~~~l~~~l~~~-~f~g~~G~v~F~~~g~~--~~~~~~i~~~~~~~~~~v 398 (635)
++++|++++... ..+++.++++|+++ +|+|++|+++|++++++ ....+.|+++++|+++.+
T Consensus 317 ~~~~al~~a~~~~~~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~~~~ 385 (386)
T 3sg0_A 317 LVENAIPAALKAAKPGTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIRDGAFRLK 385 (386)
T ss_dssp HHHHHHHHHHHHCCTTSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGCEEEEEETTEEEEC
T ss_pred HHHHHHHHhhhccCCCCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCCceEEEEEECCEEEec
Confidence 999999999421 13478999999998 89999999999976544 236689999999988764
No 34
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=100.00 E-value=1.5e-33 Score=293.15 Aligned_cols=346 Identities=13% Similarity=0.142 Sum_probs=280.2
Q ss_pred CCeEEEEEEeeCCCc---CcHHHHHHHHHHHHhHhcCCC--CeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCC
Q 006683 32 EEVTKIGAIVDANSQ---MGKQAITAMKIAVQNFNSDSR--NHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (635)
Q Consensus 32 ~~~i~IG~i~p~s~~---~g~~~~~a~~~Av~~iN~~~~--g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (635)
+++++||+++|+++. .+.....|+++|++++|++++ |++++++++|+++++..+.+.+++++.+++|.+|||+.+
T Consensus 5 ~~~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~ 84 (385)
T 1pea_A 5 QERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYM 84 (385)
T ss_dssp ---CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBTTBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEECCS
T ss_pred CCCeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCCCeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECCCc
Confidence 467999999999753 577889999999999999985 789999999999999999999999996689999999998
Q ss_pred hhhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchH
Q 006683 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (635)
Q Consensus 107 s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~ 186 (635)
+..+.++.+++...++|+|++... .. ...++++||+.+++..++..++++|.+.+|++|++|+.++.++ +...
T Consensus 85 s~~~~~~~~~~~~~~iP~v~~~~~--~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~--~~~~ 157 (385)
T 1pea_A 85 SHTRKAVMPVVERADALLCYPTPY--EG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYP--RESN 157 (385)
T ss_dssp HHHHHHHHHHHHHTTCEEEECSCC--CC---CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHH--HHHH
T ss_pred hHHHHHHHHHHHhcCceEEECCcc--cC---ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCCChHH--HHHH
Confidence 888888889999999999988654 21 1246789999999999999999999999999999999987788 8888
Q ss_pred HHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEe
Q 006683 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIV 266 (635)
Q Consensus 187 ~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~ 266 (635)
+.+++.+++.| ++++....++... ...++...++++++.++++|++ .++...+..++++++++|+.++.+.++.
T Consensus 158 ~~~~~~l~~~G-~~v~~~~~~~~~~----~~~d~~~~~~~l~~~~pdaI~~-~~~~~~a~~~~~~~~~~G~~~~~~~~~~ 231 (385)
T 1pea_A 158 HVMRHLYRQHG-GTVLEEIYIPLYP----SDDDLQRAVERIYQARADVVFS-TVVGTGTAELYRAIARRYGDGRRPPIAS 231 (385)
T ss_dssp HHHHHHHHHTT-CEEEEEEEECSSC----CHHHHHHHHHHHHHHTCSEEEE-ECCTHHHHHHHHHHHHHHCSSCCCCEEE
T ss_pred HHHHHHHHHcC-CEEEEEEeecCCC----CcchHHHHHHHHHHCCCCEEEE-ecccccHHHHHHHHHHcCCCcCCceEEe
Confidence 99999999999 9988765555411 1267889999999889999999 8878889999999999999865444554
Q ss_pred eCchhhhhcccChhhhhhccceEEEEeecC-CCCchhHHHHHHHHHhhccCCCCCCCCCCcchhhhHhhHHHHHHHHHHh
Q 006683 267 TNTVANALDSLNTTVISSMEGTLGIKSYYS-DDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGR 345 (635)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~ 345 (635)
.+.....+.... .+..+|++...++.. ...|..++|.++|+++|... ..++.++..+|||++++++|+++
T Consensus 232 ~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~------~~~~~~~~~~yda~~~~~~Al~~ 302 (385)
T 1pea_A 232 LTTSEAEVAKME---SDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPEN------ATITAWAEAAYWQTLLLGRAAQA 302 (385)
T ss_dssp SSCCHHHHTTSC---HHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCTT------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHhcC---chhhCCeEEecccccccCCHHHHHHHHHHHHHhCCC------CCCChHHHHHHHHHHHHHHHHHH
Confidence 432221121111 135678877765543 33577889999998877421 14677899999999999999999
Q ss_pred hcccCCChHHHHHHHHcCcccceeeeEEEeCCCCCCCCcEEEEEe-eCCceEEEEee
Q 006683 346 LNYNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNV-VGKKYKELDFW 401 (635)
Q Consensus 346 ~~~~~~~~~~l~~~l~~~~f~g~~G~v~F~~~g~~~~~~~~i~~~-~~~~~~~vG~w 401 (635)
++. .+++.|+++|++++|+|++|+++|+++++.....+.|.++ ++|+++.|...
T Consensus 303 ag~--~~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~~v~~~ 357 (385)
T 1pea_A 303 AGN--WRVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQS 357 (385)
T ss_dssp HTS--CCHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEEEEC
T ss_pred hCC--CCHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEEEeecC
Confidence 987 6899999999999999999999999865544577899999 78999888665
No 35
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=100.00 E-value=1.2e-33 Score=291.47 Aligned_cols=337 Identities=19% Similarity=0.231 Sum_probs=277.1
Q ss_pred CCeEEEEEEeeCCCc---CcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChh
Q 006683 32 EEVTKIGAIVDANSQ---MGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (635)
Q Consensus 32 ~~~i~IG~i~p~s~~---~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (635)
.++|+||+++|+++. .|.....|+++|++++| |++++++++|+++++..+.+.+++++.+++|.+|||+.++.
T Consensus 5 ~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~----g~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~ 80 (362)
T 3snr_A 5 TNEITVGISVTTTGPAAALGIPERNALEFVVKEIS----GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMGSSVTP 80 (362)
T ss_dssp CCCEEEEEEECCSSTTHHHHHHHHHGGGGSCSEET----TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECSSHH
T ss_pred CCCeEEEEEecccCchhhcCHHHHHHHHHHHHHhC----CeEEEEEEecCCCCHHHHHHHHHHHHhccCceEEEcCCCcH
Confidence 468999999999853 46778899999999995 68999999999999999999999999666999999999999
Q ss_pred hHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHH
Q 006683 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLAL 188 (635)
Q Consensus 109 ~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~ 188 (635)
.+.++.+++...++|+|++.++ + +....+|++||+.|++..++..+++++.++||++|++|+.++.+| +...+.
T Consensus 81 ~~~~~~~~~~~~~ip~v~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~--~~~~~~ 154 (362)
T 3snr_A 81 PSVAISNVANEAQIPHIALAPL---P-ITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYG--DLWFND 154 (362)
T ss_dssp HHHHHHHHHHHHTCCEEESSCC---C-CCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHH--HHHHHH
T ss_pred HHHHHHHHHHHcCccEEEecCC---c-cccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEEEecCchHH--HHHHHH
Confidence 9999999999999999998755 2 234567999999999999999999999999999999999998899 888999
Q ss_pred HHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEeeC
Q 006683 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268 (635)
Q Consensus 189 ~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~ 268 (635)
+++.+++.| ++++....++... .++...++++++.++++|++ .+....+..+++++++.|+.. .++...
T Consensus 155 ~~~~l~~~g-~~v~~~~~~~~~~------~~~~~~~~~l~~~~~dav~~-~~~~~~a~~~~~~~~~~g~~~---p~i~~~ 223 (362)
T 3snr_A 155 LKKQGEAMG-LKIVGEERFARPD------TSVAGQALKLVAANPDAILV-GASGTAAALPQTTLRERGYNG---LIYQTH 223 (362)
T ss_dssp HHHHHHHTT-CEEEEEEEECTTC------SCCHHHHHHHHHHCCSEEEE-ECCHHHHHHHHHHHHHTTCCS---EEEECG
T ss_pred HHHHHHHcC-CEEEEEeecCCCC------CCHHHHHHHHHhcCCCEEEE-ecCcchHHHHHHHHHHcCCCc---cEEecc
Confidence 999999999 9988777777654 45778899999889999999 888999999999999999976 455554
Q ss_pred chhhhhcccChhhhhhccceEEEEee------cCCC---CchhHHHHHHHHHhhccCCCCCCCCCCcchhhhHhhHHHHH
Q 006683 269 TVANALDSLNTTVISSMEGTLGIKSY------YSDD---SSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKII 339 (635)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~ 339 (635)
.+... ... .......+|++....+ .+.. .|..++|.++|+++|.. ..|+.++..+||+++++
T Consensus 224 g~~~~-~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-------~~p~~~~~~~yda~~~~ 294 (362)
T 3snr_A 224 GAASM-DFI-RIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKYGP-------SSRSQFAGHSYDAFKVL 294 (362)
T ss_dssp GGCSH-HHH-HHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHHCT-------TCCCHHHHHHHHHHHHH
T ss_pred CcCcH-HHH-HHhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHhCC-------CCCCchhHhHHHHHHHH
Confidence 44321 111 1122457888776532 1111 24688999999998852 14678999999999999
Q ss_pred HHHHHhhccc-----CCChHHHHHHHHcC-cccceeeeEEEeCCCCC--CCCcEEEEEeeCCceEEE
Q 006683 340 TEAIGRLNYN-----ISSPEMLLRQMLSS-DFSGLSGKIRFKDGELL--NADTLRIVNVVGKKYKEL 398 (635)
Q Consensus 340 a~Al~~~~~~-----~~~~~~l~~~l~~~-~f~g~~G~v~F~~~g~~--~~~~~~i~~~~~~~~~~v 398 (635)
++|+++++.. ..+++.|+++|+++ +|+|++|+++|++++++ .+..+.|+++++|+++.|
T Consensus 295 ~~al~~a~~~~~~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~~~v 361 (362)
T 3snr_A 295 ERVVPVALKKAKPGTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSRILLTVKNGKYVIV 361 (362)
T ss_dssp HHHHHHHHHHCCTTSHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGGGCEEEEEETTEEEEC
T ss_pred HHHHHHhhccccCCCcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCCCeEEEEEECCEEEEc
Confidence 9999998531 23478999999998 89999999999976543 246799999999988764
No 36
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.96 E-value=1.3e-28 Score=246.81 Aligned_cols=310 Identities=13% Similarity=0.094 Sum_probs=239.5
Q ss_pred EEEEEeeCCC---cCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHHH
Q 006683 36 KIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (635)
Q Consensus 36 ~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~ 112 (635)
|||+++|+|+ ..|.....|+++|. .|.+++++++|+++++ +...+.+++ +++|.+||||.+|..+.+
T Consensus 2 kIG~llplSG~~a~~G~~~~~G~~lA~-------~G~~i~l~~~D~~~~~--a~~~~~~l~-~~~v~~IiGp~~s~~~~a 71 (325)
T 2h4a_A 2 QIGLLLPLSGDGQILGTTIQSGFNDAK-------GNSTIPVQVFDTSMNS--VQDIIAQAK-QAGIKTLVGPLLKQNLDV 71 (325)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHH-------TTCCSCEEEEETTTSC--HHHHHHHHH-HTTCCEEECCCSHHHHHH
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHhc-------cCCCceEEEEECCCCh--HHHHHHHHH-HCCCCEEEeeCCHHHHHH
Confidence 7999999995 46889999999986 3678999999999987 566677787 899999999999999999
Q ss_pred HHHhh-ccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHH
Q 006683 113 VAEIA-SRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (635)
Q Consensus 113 v~~~~-~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~ 191 (635)
+++.+ ...++|+|++.++ + ......+.|+||+.|. .++.++++++...|.+++++|+.+++|| +.+.+.|++
T Consensus 72 ~~~~~~~~~~vp~i~~~~~--~-~~~~~~~~~~f~~~~~--~~~~~~a~~a~~~g~k~vail~~~~~yG--~~~~~~F~~ 144 (325)
T 2h4a_A 72 ILADPAQIQGMDVLALNAT--P-NSRAIPQLCYYGLSPE--DEAESAANKMWNDGVRNPLVAMPQNDLG--QRVGNAFNV 144 (325)
T ss_dssp HHHCGGGGTTCEEEESCCC--S-SCCCCTTEEECCCCHH--HHHHHHHHHHHHTTCCSCEEEEESSHHH--HHHHHHHHH
T ss_pred HHhhhhccCCCcEEECCCC--c-cccCCCCeEEEECCHH--HHHHHHHHHHHHcCCCeEEEEEcCCcHH--HHHHHHHHH
Confidence 99998 7799999998766 3 2323344566775554 5689999999888999999999999999 999999999
Q ss_pred HHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEeeCchh
Q 006683 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNTVA 271 (635)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~~~ 271 (635)
.+++.| ++|+..+.+... .|++.++++++ .++|+|++ .++..++..+.++++..+... ..+.++.+.
T Consensus 145 ~~~~~G-g~vv~~~~y~~~-------~d~~~~l~~i~-~~pDaV~~-~~~~~~~~~i~~~~~~~g~~~---pl~~~~~~~ 211 (325)
T 2h4a_A 145 RWQQLA-GTDANIRYYNLP-------ADVTYFVQENN-SNTTALYA-VASPTELAEXKGYLTNIVPNL---AIYASSRAS 211 (325)
T ss_dssp HHHHHH-SSCCEEEEESST-------THHHHHHHHST-TCCCEEEE-CCCHHHHHHHHHHHTTTCTTC---EEEECGGGC
T ss_pred HHHHcC-CCcceeEecCCH-------HHHHHHHHhcC-CCCCEEEE-eCCHHHHhhhhhhHhhcCCCC---CEEEecccc
Confidence 999999 999988888753 47999999994 79999999 999999988888888775543 666666654
Q ss_pred h-hhcccChhhhhhccceEEEE-eecCC-CCchhHHHHHHHHHhhccCCCCCCCCCCcchhhhHhhHHHHHHHHHHhhcc
Q 006683 272 N-ALDSLNTTVISSMEGTLGIK-SYYSD-DSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLNY 348 (635)
Q Consensus 272 ~-~~~~~~~~~~~~~~g~~~~~-~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~~ 348 (635)
. ... ........++|++... ++... ..+..++|.+.|+..+ .+....+++|||+.++.+. .++
T Consensus 212 ~~s~~-~~~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~----------~~~rl~AlgyDA~~l~~~l-~~l-- 277 (325)
T 2h4a_A 212 ASATN-TNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY----------QLMRLYAMGADAWLLINQF-NEL-- 277 (325)
T ss_dssp CHHHH-TCHHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH----------HHHHHHHHHHHHHHHHHTH-HHH--
T ss_pred ccCCC-CCchhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc----------chHHHHHHHHHHHHHHHHH-HHH--
Confidence 1 111 1222335788987665 33333 3355666665543322 2456679999999987654 221
Q ss_pred cCCChHHHHHHHHcCcccceeeeEEEeCCCCCCCCcEEEEEeeCCceEEEE
Q 006683 349 NISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELD 399 (635)
Q Consensus 349 ~~~~~~~l~~~l~~~~f~g~~G~v~F~~~g~~~~~~~~i~~~~~~~~~~vG 399 (635)
+.+....|+|++|.++|+++|+.. ..+.+.++++|++++|-
T Consensus 278 ---------~~~~~~~~~G~tG~l~~~~~g~~~-R~l~~~~~~~G~~~~~~ 318 (325)
T 2h4a_A 278 ---------RQVPGYRLSGLTGILSADTNCNVE-RDMTWYQYQDGAIVPVV 318 (325)
T ss_dssp ---------HHSTTCCEEETTEEEEECTTCBEE-EECEEEEEETTEEEECC
T ss_pred ---------hhCCCCeeccCceeEEECCCCeEE-EeechhhccCCeEEEee
Confidence 123346899999999999999884 88999999999988763
No 37
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.96 E-value=2.4e-28 Score=247.62 Aligned_cols=315 Identities=13% Similarity=0.097 Sum_probs=237.9
Q ss_pred eEEEEEEeeCCC---cCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhH
Q 006683 34 VTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (635)
Q Consensus 34 ~i~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (635)
.+|||+++|+|+ ..|.....|+++|++ +++++++++|++++|..+ +.+++.+++|.+||||.+|+.+
T Consensus 2 V~kIG~l~PlSG~~a~~G~~~~~g~~lA~~-------g~~i~l~~~D~~~~~~~a---a~~~~~~~~v~~iiGp~~s~~~ 71 (327)
T 3ckm_A 2 VSQIGLLLPLSGDGQILGTTIQSGFNDAKG-------NSTIPVQVFDTSMNSVQD---IIAQAKQAGIKTLVGPLLKQNL 71 (327)
T ss_dssp -CCEEEEECCSSTTHHHHHHHHHHHHHHHT-------TCCSCEEEEETTTSCHHH---HHHHHHHTTCCEEECCCSHHHH
T ss_pred EEEEEEEECCCCchHHHHHHHHHHHHHhCC-------CCCceEEEEeCCCCHHHH---HHHHHHHcCCeEEEEccccccc
Confidence 379999999995 457888889888863 567899999999999665 3455558999999999998877
Q ss_pred HHHHHh-hccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHH
Q 006683 111 AVVAEI-ASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALL 189 (635)
Q Consensus 111 ~~v~~~-~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~ 189 (635)
.++++. +....+|+++.+++ +.. ...|++||+.+++..++.++++++...+++++++++.+++|| +.+.+.|
T Consensus 72 ~a~~~~~~~~~~v~~~~~~~~---~~~--~~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~~~yg--~~~~~~f 144 (327)
T 3ckm_A 72 DVILADPAQIQGMDVLALNAT---PNS--RAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLG--QRVGNAF 144 (327)
T ss_dssp HHHHHCGGGGTTCEEEESCCC---TTC--CCCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHH--HHHHHHH
T ss_pred hhhHHHHHhccCceEeccCcC---ccc--ccCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEecCChHH--HHHHHHH
Confidence 776655 45556666655444 222 234789999999999999999999989999999999999999 9999999
Q ss_pred HHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEeeCc
Q 006683 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (635)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~ 269 (635)
++.+++.| ++|+..+.++... ....+.+++..++|+|++ .....++..+++++++.|+.. .++.++.
T Consensus 145 ~~~~~~~G-g~vv~~~~~~~~~--------~~~~~~~~~~~~~dai~~-~~~~~~~~~i~~q~~~~g~~~---~~~~~~~ 211 (327)
T 3ckm_A 145 NVRWQQLA-GTDANIRYYNLPA--------DVTYFVQENNSNTTALYA-VASPTELAEMKGYLTNIVPNL---AIYASSR 211 (327)
T ss_dssp HHHHHHHH-SSCCEEEEESSTT--------HHHHHHHHSCTTCCEEEE-CCCHHHHHHHHHHHTTTCTTC---EEEECGG
T ss_pred HHHHHHCC-CeEEEEEECCCCc--------hhhHHHHHhccCCcEEEE-EcCHHHHHHHHHHHHhhhccC---CEEeeec
Confidence 99999999 9999988886644 335667788889999999 999999999999999998765 5666655
Q ss_pred hhhhhcccChhhhhhccceEEEEe-ec-CCCCchhHHHHHHHHHhhccCCCCCCCCCCcchhhhHhhHHHHHHHHHHhhc
Q 006683 270 VANALDSLNTTVISSMEGTLGIKS-YY-SDDSSPYKEFSALFRRNFTSEYPEEDHFHPSIHALRAHDSIKIITEAIGRLN 347 (635)
Q Consensus 270 ~~~~~~~~~~~~~~~~~g~~~~~~-~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~yDav~~~a~Al~~~~ 347 (635)
+...............+|++.... +. ....+..++|.++|++.|. +..+.+++|||+.++.++.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~----------~~~~~AlgyDA~~l~~~l~~~-- 279 (327)
T 3ckm_A 212 ASASATNTNTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQ----------LMRLYAMGADAWLLINQFNEL-- 279 (327)
T ss_dssp GCCHHHHTCHHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHH----------HHHHHHHHHHHHHHHHTHHHH--
T ss_pred cccccchhcchhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhcC----------CCchHHHHHHHHHHHHHHHHh--
Confidence 432211111222244667665543 22 2234667777776665542 234678899999887654332
Q ss_pred ccCCChHHHHHHHHcCcccceeeeEEEeCCCCCCCCcEEEEEeeCCceEEEEee
Q 006683 348 YNISSPEMLLRQMLSSDFSGLSGKIRFKDGELLNADTLRIVNVVGKKYKELDFW 401 (635)
Q Consensus 348 ~~~~~~~~l~~~l~~~~f~g~~G~v~F~~~g~~~~~~~~i~~~~~~~~~~vG~w 401 (635)
+.+...+|.|++|.++||++|+.. ..+.+.++++|++++|..-
T Consensus 280 ----------~~~~~~~f~G~tG~i~fd~~G~~~-r~l~~~~~~~G~~vpv~d~ 322 (327)
T 3ckm_A 280 ----------RQVPGYRLSGLTGILSADTNCNVE-RDMTWYQYQDGAIVPVVDH 322 (327)
T ss_dssp ----------HHSTTCCEEETTEEEEECTTCBEE-EECEEEEEETTEEEECC--
T ss_pred ----------cCCCCCCceeceEEEEECCCCCCc-cccEEEEEECCEEEEcccc
Confidence 233446899999999999999864 7899999999999998654
No 38
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.57 E-value=1.6e-15 Score=152.20 Aligned_cols=123 Identities=20% Similarity=0.375 Sum_probs=89.6
Q ss_pred CCCCCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecC---------CCChhh
Q 006683 449 PSNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPH---------DGVYDD 519 (635)
Q Consensus 449 ~~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~---------~~~~~~ 519 (635)
...+++|||++... +||.+.+..... .+.+.++.||++||+++|++++|++++++.++. +.+|++
T Consensus 9 i~~~~~l~V~~~~~---~P~~~~~~~~~~---~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~ 82 (312)
T 1yae_A 9 SLSNRSLIVTTILE---EPYVLFKKSDKP---LYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNG 82 (312)
T ss_dssp TTCSCEEEEEECCB---TTTBEECCCSSC---CCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCS
T ss_pred hhcCceEEEEEecc---CCeeEEeccccc---cCCCceEEEEEHHHHHHHHHHcCCeEEEEecCCCccceeccCCCcchH
Confidence 45578899999753 688887621000 000128999999999999999999988886542 357999
Q ss_pred HHHHHHcCcccEEEecccccccccccccccccceeeeeEEEEeCCCC--CCcceeecCCC
Q 006683 520 LINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE--ESTWMFTKPFT 577 (635)
Q Consensus 520 ~~~~l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~--~~~~~~l~pf~ 577 (635)
++.+|.+|++|++++++++|++|++.++||.||+.++.+++++++.. .++|.|+.||+
T Consensus 83 ~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~ 142 (312)
T 1yae_A 83 MVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGS 142 (312)
T ss_dssp HHHHHHTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC----------------
T ss_pred HHHHHhCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccc
Confidence 99999999999999999999999999999999999999999998763 36789999997
No 39
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.50 E-value=1.2e-14 Score=140.04 Aligned_cols=108 Identities=12% Similarity=0.224 Sum_probs=88.0
Q ss_pred CCCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHC-CCcccEEEecCCCChhhHHHHHHcCcc
Q 006683 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTY 529 (635)
Q Consensus 451 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~ 529 (635)
+.++|+||+ .+.||||.+.+++| +++||++||+++||++| |++++++..+ |++++.+|.+|++
T Consensus 7 ~~~tl~vg~--~~~~pP~~~~d~~G----------~~~G~~vdl~~~ia~~l~g~~~~~~~~~----~~~~~~~l~~g~~ 70 (243)
T 4gvo_A 7 KVQTITVGT--GTQFPNVCFLDENG----------KLTGYDVELVKEIDKRLPGYKFKFKTMD----FSNLLVSLGAGKV 70 (243)
T ss_dssp -CEEEEEEE--CSEETTTEEECTTS----------CEESHHHHHHHHHHHTCTTEEEEEEECC----GGGHHHHHHTTSC
T ss_pred cCCeEEEEE--CCCCCCeEEECCCC----------cEEEhHHHHHHHHHHhccCCeEEEEECC----HHHHHHHHHCCCC
Confidence 356799999 55789999988777 89999999999999998 9998887765 9999999999999
Q ss_pred cEEEecccccccccccccccccceeeeeEEE-EeCCCCC-Ccceeec
Q 006683 530 DAAVGDLTILGNRTEYVEFTQPYAESGFSMI-VPAKQEE-STWMFTK 574 (635)
Q Consensus 530 D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~-v~~~~~~-~~~~~l~ 574 (635)
|++++++++|++|++.++||.||+.....++ +++.... +.+..|+
T Consensus 71 D~~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~~~~~~~dL~ 117 (243)
T 4gvo_A 71 DIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNSINSTKDLA 117 (243)
T ss_dssp SEECSCCBCCHHHHHHSEECSSCCEECCEEEEEETTCCSCSSGGGGT
T ss_pred CEecccCCCCHHHhhhhhhhhhhcccccceEEEeccccccCchHHhc
Confidence 9999999999999999999999877655544 4444332 3344443
No 40
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.49 E-value=9.2e-15 Score=144.99 Aligned_cols=104 Identities=18% Similarity=0.319 Sum_probs=85.5
Q ss_pred CCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecCC-------------CChh
Q 006683 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHD-------------GVYD 518 (635)
Q Consensus 452 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~-------------~~~~ 518 (635)
.++|+|++ ++.|+||.+.+.++ +++|||+||+++|++++|++++++.++++ ++|+
T Consensus 40 ~~~l~vg~--~~~~~P~~~~~~~g----------~~~G~~vDll~~ia~~lg~~~~~~~~~d~~~g~~~~~~~~~~~~w~ 107 (292)
T 1pb7_A 40 KKVICTGP--NDTSPGSPRHTVPQ----------CCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWN 107 (292)
T ss_dssp CCEEEEEE--C--------CEEEE----------EEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEEC
T ss_pred cceeeccc--CCCCCCcccccccc----------CcceeHHHHHHHHHHHcCceEEEEEecCCcccccccccccccCcHH
Confidence 46788988 45678888877666 89999999999999999999888886421 3699
Q ss_pred hHHHHHHcCcccEEEecccccccccccccccccceeeeeEEEEeCCCCC
Q 006683 519 DLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEE 567 (635)
Q Consensus 519 ~~~~~l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~~ 567 (635)
+++++|.+|++|++++++++|++|++.++||.||+.++.+++++++.+.
T Consensus 108 ~~~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~~i 156 (292)
T 1pb7_A 108 GMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRI 156 (292)
T ss_dssp HHHHHHHHTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTCCC
T ss_pred HHHHHHHcCCcCEEEeeeEecHHHhcceEechhhHhcCeEEEEECCcCC
Confidence 9999999999999999999999999999999999999999999988654
No 41
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.49 E-value=1.5e-14 Score=139.43 Aligned_cols=102 Identities=20% Similarity=0.333 Sum_probs=89.1
Q ss_pred CCCCEEEEecCCCCccceEEeec-CCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcc
Q 006683 451 NQEPMRIGVPTRTFFEKFVVIKD-DPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTY 529 (635)
Q Consensus 451 ~~~~l~v~~~~~~~~~p~~~~~~-~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~ 529 (635)
+.++|+||+ .+.||||.+.+. ++ .| +++||++||+++||+++|++++++..+ |++++.+|.+|++
T Consensus 10 ~~g~L~Vg~--~~~~pP~~~~~~~d~----~g----~~~G~~vdl~~~ia~~lg~~~~~~~~~----~~~~~~~l~~g~~ 75 (243)
T 4h5g_A 10 QKGKLVVAT--SPDYAPFEFQSLVDG----KN----QVVGADIDMAQAIADELGVKLEILSMS----FDNVLTSLQTGKA 75 (243)
T ss_dssp HHTEEEEEE--CCCBTTTBEEEEETT----EE----EEESHHHHHHHHHHHHHTSEEEEEECC----GGGHHHHHHTTSC
T ss_pred hCCEEEEEE--CCCCCCcEeeeccCC----CC----cEEEeHHHHHHHHHHHhCCceEEeccc----HHHHHHHHHcCCC
Confidence 357899999 557899988642 33 12 899999999999999999998877665 9999999999999
Q ss_pred cEEEecccccccccccccccccceeeeeEEEEeCCCC
Q 006683 530 DAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (635)
Q Consensus 530 D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (635)
|++++++++|++|++.++||.||+.++.++++++.+.
T Consensus 76 d~~~~~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~~ 112 (243)
T 4h5g_A 76 DLAVAGISATDERKEVFDFSIPYYENKISFLVHKADV 112 (243)
T ss_dssp SEECSSCBCCHHHHTTEEECSCSBCCCEEEEEEGGGT
T ss_pred CcccccccCChhHccEEEccCccccCccccccccccc
Confidence 9999999999999999999999999999999987654
No 42
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.49 E-value=2.6e-14 Score=139.14 Aligned_cols=114 Identities=22% Similarity=0.411 Sum_probs=94.2
Q ss_pred CCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecC---------CCChhhHHH
Q 006683 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPH---------DGVYDDLIN 522 (635)
Q Consensus 452 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~---------~~~~~~~~~ 522 (635)
+++|||++... +||.+.+.+... .+| +.++.||++||+++|++++|++++++.+|. +.+|++++.
T Consensus 3 ~~~l~v~~~~~---~P~~~~~~~~~~-~~~--~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~ 76 (259)
T 3g3k_A 3 NRSLIVTTILE---EPYVLFKKSDKP-LYG--NDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVR 76 (259)
T ss_dssp CCCEEEEECCB---TTTBEECCCSSC-CCG--GGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHH
T ss_pred CcEEEEEEecC---CCeEEEeecccc-cCC--CceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHH
Confidence 57899999754 578887653100 011 228999999999999999999998888764 357999999
Q ss_pred HHHcCcccEEEecccccccccccccccccceeeeeEEEEeCCCCCCcce
Q 006683 523 GVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWM 571 (635)
Q Consensus 523 ~l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~ 571 (635)
+|.+|++|++++++++|++|++.++||.||+..+.+++++++.+.+.+.
T Consensus 77 ~l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~i~~~~ 125 (259)
T 3g3k_A 77 ELIDHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGTPIDSAD 125 (259)
T ss_dssp HHHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSSSCCSHH
T ss_pred HHhcCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCccccCHH
Confidence 9999999999999999999999999999999999999999987654333
No 43
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.42 E-value=1.8e-13 Score=130.76 Aligned_cols=98 Identities=22% Similarity=0.385 Sum_probs=88.1
Q ss_pred CCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccE
Q 006683 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDA 531 (635)
Q Consensus 452 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~ 531 (635)
.++|||++. +.|+||.+.+.+| +++||++||++++++++|++++++..+ |.+++.+|.+|++|+
T Consensus 4 a~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~~----~~~~~~~l~~g~~D~ 67 (232)
T 3i6v_A 4 ADTVRMGTE--GAYPPYNFINDAG----------EVDGFERELGDELCKRAGLTCEWVKND----WDSIIPNLVSGNYDT 67 (232)
T ss_dssp --CEEEEEC--SEETTTEEECTTS----------CEESHHHHHHHHHHHHHTCCEEEEECC----GGGHHHHHHTTSCSE
T ss_pred CCEEEEEEC--CCCCCeeEECCCC----------CEeeehHHHHHHHHHHcCCceEEEECC----HHHHHHHHHCCCCCE
Confidence 467999995 4678999987666 899999999999999999998877754 999999999999999
Q ss_pred EEecccccccccccccccccceeeeeEEEEeCCC
Q 006683 532 AVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQ 565 (635)
Q Consensus 532 ~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~ 565 (635)
++++++.|++|++.++||.||+..+.+++++++.
T Consensus 68 ~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 101 (232)
T 3i6v_A 68 IIAGMSITDERDEVIDFTQNYIPPTASSYVATSD 101 (232)
T ss_dssp ECSSCBCCHHHHTTSEEEEEEECCCEEEEEESST
T ss_pred EEeCCcCCHHHHhhcCcccccccCCeEEEEECCC
Confidence 9999999999999999999999999999999875
No 44
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.41 E-value=2.1e-13 Score=133.06 Aligned_cols=109 Identities=23% Similarity=0.455 Sum_probs=91.5
Q ss_pred CCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecC--------CCChhhHHHH
Q 006683 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPH--------DGVYDDLING 523 (635)
Q Consensus 452 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~--------~~~~~~~~~~ 523 (635)
+++|||++... +||.+.+.+..+ ..| ++.||++||++++++++|++++++.++. ..+|++++.+
T Consensus 2 ~~~l~v~~~~~---pP~~~~~~~~~g-~~g----~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 73 (265)
T 2v3u_A 2 GVVLRVVTVLE---EPFVMVSENVLG-KPK----KYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGE 73 (265)
T ss_dssp CCEEEEEECCB---TTTBEEECCSTT-CCC----EEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHH
T ss_pred CeEEEEEEecc---CCeEEEecCCCC-Ccc----eEeEEEHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCcchHHHH
Confidence 57899999754 688887765100 112 8999999999999999999988876542 2469999999
Q ss_pred HHcCcccEEEecccccccccccccccccceeeeeEEEEeCCCCCC
Q 006683 524 VYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEES 568 (635)
Q Consensus 524 l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~~~ 568 (635)
|.+|++|++++++++|++|.+.++||.||+..+.+++++++.+.+
T Consensus 74 l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~i~ 118 (265)
T 2v3u_A 74 LVFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGTSIQ 118 (265)
T ss_dssp HHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCCCC
T ss_pred HHcCCcCeEEeeeEeehhhhccccccceeeeccEEEEEECCCCcc
Confidence 999999999889999999999999999999999999999887643
No 45
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.40 E-value=2e-13 Score=133.07 Aligned_cols=111 Identities=18% Similarity=0.363 Sum_probs=90.3
Q ss_pred CCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecC---------CCChhhHHH
Q 006683 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPH---------DGVYDDLIN 522 (635)
Q Consensus 452 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~---------~~~~~~~~~ 522 (635)
+++|+|++.. ++||.+.+.++.+ ..+ +.++.||++||+++|++++|++++++..+. +.+|++++.
T Consensus 3 ~~~l~v~~~~---~pP~~~~~~~~~~-~~~--~g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 76 (263)
T 1mqi_A 3 NKTVVVTTIL---ESPYVMMKKNHEM-LEG--NERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVG 76 (263)
T ss_dssp CCCEEEEECC---BTTTBEECTTGGG-CCG--GGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHH
T ss_pred CeEEEEEEec---CCCcEEEecCccc-ccC--CCceeeeHHHHHHHHHHHcCceEEEEEccccccCccCCCCCCcHHHHH
Confidence 5679999964 6789887754100 000 118999999999999999999988877631 115999999
Q ss_pred HHHcCcccEEEecccccccccccccccccceeeeeEEEEeCCCCCC
Q 006683 523 GVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEES 568 (635)
Q Consensus 523 ~l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~~~ 568 (635)
+|.+|++|++++++++|++|++.++||.||+..+.+++++++.+.+
T Consensus 77 ~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~i~ 122 (263)
T 1mqi_A 77 ELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIE 122 (263)
T ss_dssp HHHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCSCC
T ss_pred HHHcCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCccccC
Confidence 9999999999888999999999999999999999999999887543
No 46
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.39 E-value=2e-13 Score=134.72 Aligned_cols=82 Identities=27% Similarity=0.507 Sum_probs=75.0
Q ss_pred cccceeHHHHHHHHHHCCCcccEEEecC-------CCChhhHHHHHHcCcccEEEecccccccccccccccccceeeeeE
Q 006683 486 RYDGFSIELFRLVVDHLNYDLPYEFVPH-------DGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFS 558 (635)
Q Consensus 486 ~~~G~~~dl~~~la~~l~~~~~~~~~~~-------~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~ 558 (635)
++.||++||++++++++|++++++.++. +++|++++.+|.+|++|+++++++++++|.+.++||.||+.++.+
T Consensus 56 ~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~ 135 (284)
T 2a5s_A 56 CCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGIS 135 (284)
T ss_dssp EEESHHHHHHHHHHHHHTCCEEEEECCSSSSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEEECEE
T ss_pred eeeEEhHHHHHHHHHHCCCCEEEEEccCCccCcccCCCHHHHHHHHhcCCcCEEEEEEEEeccccceEEeccCchhcCEE
Confidence 6899999999999999999988877652 357999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCC
Q 006683 559 MIVPAKQEE 567 (635)
Q Consensus 559 ~~v~~~~~~ 567 (635)
++++++.+.
T Consensus 136 ~~~~~~~~~ 144 (284)
T 2a5s_A 136 VMVSRGTQV 144 (284)
T ss_dssp EEEETTCCC
T ss_pred EEEECCccc
Confidence 999987653
No 47
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.39 E-value=1.9e-13 Score=135.65 Aligned_cols=79 Identities=22% Similarity=0.509 Sum_probs=72.9
Q ss_pred ccceeHHHHHHHHHHCCCcccEEEecC-------CCChhhHHHHHHcCcccEEEecccccccccccccccccceeeeeEE
Q 006683 487 YDGFSIELFRLVVDHLNYDLPYEFVPH-------DGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSM 559 (635)
Q Consensus 487 ~~G~~~dl~~~la~~l~~~~~~~~~~~-------~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~ 559 (635)
++||++||+++|++++|++++++.+++ ..+|++++++|.+|++|++++++++|++|++.++||.||+..+.++
T Consensus 68 ~~G~~vdll~~ia~~lg~~~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~~~i 147 (294)
T 2rc8_A 68 CYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGI 147 (294)
T ss_dssp EESHHHHHHHHHHHHHTEEEEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEEEEE
T ss_pred ceEEhHHHHHHHHHHcCCcEEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcceEE
Confidence 789999999999999999988876642 3469999999999999999999999999999999999999999999
Q ss_pred EEeCCC
Q 006683 560 IVPAKQ 565 (635)
Q Consensus 560 ~v~~~~ 565 (635)
+++++.
T Consensus 148 ~~~~~~ 153 (294)
T 2rc8_A 148 LVRTRG 153 (294)
T ss_dssp EEETTS
T ss_pred EEECCC
Confidence 999875
No 48
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.38 E-value=7.4e-13 Score=126.86 Aligned_cols=106 Identities=24% Similarity=0.374 Sum_probs=92.4
Q ss_pred CCCEEEEecCCCCccceEEe-ecCCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCccc
Q 006683 452 QEPMRIGVPTRTFFEKFVVI-KDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYD 530 (635)
Q Consensus 452 ~~~l~v~~~~~~~~~p~~~~-~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D 530 (635)
.++|+|++. +.|+||.+. +++| ++.|+++||++++++++|++++++..+ |.+++.+|.+|++|
T Consensus 2 ~~~l~v~~~--~~~~P~~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~~----~~~~~~~l~~g~~D 65 (237)
T 3kzg_A 2 SLNLTIGTS--KFNPPFEVWSGNNS----------SLYGFDIDLMQEICRRLHATCTFEAYI----FDDLFPALKNREVD 65 (237)
T ss_dssp CCEEEEEEE--SEETTTEECCCTTS----------CCBSHHHHHHHHHHHHTTCEEEEEEEC----GGGHHHHHHTTSSS
T ss_pred CceEEEEEC--CCCCCeEEEeCCCC----------CEeeehHHHHHHHHHHhCCceEEEEcC----HHHHHHHHhCCCCC
Confidence 367999995 457899997 6555 899999999999999999998887765 99999999999999
Q ss_pred EEEecccccccccccccccccceeeeeEEEEeCCCCCCcceee
Q 006683 531 AAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFT 573 (635)
Q Consensus 531 ~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~l 573 (635)
+++++++.+++|.+.++||.||+..+.+++++++.+...+..|
T Consensus 66 ~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~~~~~~~~~~~~dL 108 (237)
T 3kzg_A 66 LVIASMIITDERKKHFIFSLPYMESNSQYITTVDSKISTFDDL 108 (237)
T ss_dssp EECSSCBCCTTGGGTCEECCCSBCCEEEEEEETTCSCCSGGGG
T ss_pred EEEEccccChhHhccceeeeeeeecceEEEEECCCCCCCHHHh
Confidence 9999999999999999999999999999999988764333333
No 49
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.34 E-value=1.4e-12 Score=125.54 Aligned_cols=99 Identities=23% Similarity=0.399 Sum_probs=89.8
Q ss_pred CCCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCccc
Q 006683 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYD 530 (635)
Q Consensus 451 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D 530 (635)
..++|||++. +.++||.+.+++| ++.|+++||++++++++|++++++..+ |.+++.+|.+|++|
T Consensus 3 ~~~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~~----~~~~~~~l~~g~~D 66 (245)
T 3k4u_A 3 LRGELRVGLE--PGYLPFEMKDKKG----------NVIGFDVDLAREMAKAMGVKLKLVPTS----WDGLIPGLVTEKFD 66 (245)
T ss_dssp CCSEEEEEEC--TTSTTTCEEETTT----------EEESHHHHHHHHHHHHHTCEEEEEECC----GGGHHHHHHTTSCS
T ss_pred cCCeEEEEEC--CCcCCeeEECCCC----------CCccchHHHHHHHHHHhCCeEEEEEcc----HHHHHHHHhCCCcC
Confidence 3567999995 4678999987766 899999999999999999998877765 99999999999999
Q ss_pred EEEecccccccccccccccccceeeeeEEEEeCCC
Q 006683 531 AAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQ 565 (635)
Q Consensus 531 ~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~ 565 (635)
+++++++.+++|.+.+.||.||+..+.+++++++.
T Consensus 67 ~~~~~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~ 101 (245)
T 3k4u_A 67 IIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGL 101 (245)
T ss_dssp EECSSCBCCHHHHTTSEECSCSEEECEEEEEETTT
T ss_pred EEEecCcCCHHHHhhcCcchhhheeceEEEEECCc
Confidence 98889999999999999999999999999999884
No 50
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.33 E-value=2.1e-12 Score=122.49 Aligned_cols=99 Identities=20% Similarity=0.401 Sum_probs=87.8
Q ss_pred CCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccEE
Q 006683 453 EPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAA 532 (635)
Q Consensus 453 ~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~ 532 (635)
++|||++.. .|+||.+.+.+| ++.|+++|+++++++++|++++++..+ |..++.+|.+|++|++
T Consensus 2 ~~l~v~~~~--~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~~----~~~~~~~l~~g~~D~~ 65 (227)
T 3tql_A 2 DTIKFATEA--TYPPYVYMGPSG----------QVEGFGADIVKAVCKQMQAVCTISNQP----WDSLIPSLKLGKFDAL 65 (227)
T ss_dssp CEEEEEECS--CBTTTBEEC--C----------CEESHHHHHHHHHHHHTTCEEEEEECC----HHHHHHHHHHTSCSEE
T ss_pred ceEEEEEcC--CCCCeeEECCCC----------CcccchHHHHHHHHHHhCCeEEEEeCC----HHHHHHHHhCCCCCEE
Confidence 579999953 678999987666 899999999999999999998777654 9999999999999998
Q ss_pred EecccccccccccccccccceeeeeEEEEeCCCCC
Q 006683 533 VGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEE 567 (635)
Q Consensus 533 ~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~~ 567 (635)
+++++.+++|.+.+.||.||+..+.+++++++.+.
T Consensus 66 ~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~~ 100 (227)
T 3tql_A 66 FGGMNITTARQKEVDFTDPYYTNSVSFIADKNTPL 100 (227)
T ss_dssp CSSCBCCTTGGGTEEECSCSBCCEEEEEEETTSCC
T ss_pred EecCcCCHhHHhheecccceeccceEEEEeCCCCC
Confidence 88999999999999999999999999999988654
No 51
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.33 E-value=1.2e-12 Score=125.46 Aligned_cols=100 Identities=18% Similarity=0.344 Sum_probs=89.8
Q ss_pred CCCCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcc
Q 006683 450 SNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTY 529 (635)
Q Consensus 450 ~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~ 529 (635)
...++|+|++. +.|+||.+.+.+| ++.||++||++++++++|++++++..+ |..++.+|.+|++
T Consensus 12 ~~~~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~~----~~~~~~~l~~g~~ 75 (239)
T 3kbr_A 12 LESGVLRVATT--GDYKPFSYRTEEG----------GYAGFDVDMAQRLAESLGAKLVVVPTS----WPNLMRDFADDRF 75 (239)
T ss_dssp HHHTEEEEEEC--SEETTTEEECTTS----------CEESHHHHHHHHHHHHTTCEEEEEECC----TTTHHHHHHTTCC
T ss_pred hhCCeEEEEEC--CCCCCeeEECCCC----------CEEeehHHHHHHHHHHHCCceEEEEeC----HHHHHHHHHCCCc
Confidence 34678999994 4678999987666 899999999999999999997777654 9999999999999
Q ss_pred cEEEecccccccccccccccccceeeeeEEEEeCCC
Q 006683 530 DAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQ 565 (635)
Q Consensus 530 D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~ 565 (635)
|+++++++.+++|++.++||.||+..+.++++++++
T Consensus 76 D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~ 111 (239)
T 3kbr_A 76 DIAMSGISINLERQRQAYFSIPYLRDGKTPITLCSE 111 (239)
T ss_dssp SEECSSCBCCHHHHTTCEECSCSEEECEEEEEEGGG
T ss_pred CEEEeCCcCCHHHcCccccchHHhccCcEEEEECCc
Confidence 999889999999999999999999999999999875
No 52
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.32 E-value=1.8e-12 Score=126.64 Aligned_cols=109 Identities=17% Similarity=0.281 Sum_probs=93.9
Q ss_pred CCCCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcc
Q 006683 450 SNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTY 529 (635)
Q Consensus 450 ~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~ 529 (635)
...++|||++. +.|+||.+.+++| ++.||++||++++++++|++++++..+ |.+++.+|.+|++
T Consensus 18 ~~~~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~~----~~~~~~~l~~g~~ 81 (268)
T 3hv1_A 18 TKEKKIKIGFD--ATFVPMGYEEKDG----------SYIGFDIDLANAVFKLYGIDVEWQAID----WDMKETELKNGTI 81 (268)
T ss_dssp HHHTEEEEEEC--TEETTTEEECTTS----------CEECHHHHHHHHHHHTTTCEEEEEECC----GGGHHHHHHHTSC
T ss_pred hcCCcEEEEEC--CCCCCceEECCCC----------CEEEehHHHHHHHHHHhCCcEEEEECC----HHHHHHHHHCCCC
Confidence 34678999995 4678999987666 899999999999999999997777665 9999999999999
Q ss_pred cEEEecccccccccccccccccceeeeeEEEEeCCCCCCcceeec
Q 006683 530 DAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTK 574 (635)
Q Consensus 530 D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~l~ 574 (635)
|+++++++.+++|.+.+.||.||+..+.+++++++...+.+..|+
T Consensus 82 D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~i~~~~dL~ 126 (268)
T 3hv1_A 82 DLIWNGYSVTDERKQSADFTEPYMVNEQVLVTKKSSGIDSVAGMA 126 (268)
T ss_dssp SEECSSCBCCHHHHTTCEECCCCEEECEEEEEEGGGCCCSSGGGT
T ss_pred CEEEecCccCHHHHhcCcCcHHHeeCceEEEEECCCCCCCHHHhC
Confidence 999889999999999999999999999999999876544333333
No 53
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.32 E-value=8e-13 Score=129.50 Aligned_cols=102 Identities=19% Similarity=0.294 Sum_probs=90.3
Q ss_pred CCCCCCEEEEecCCCCccceEEeecC---CCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHH
Q 006683 449 PSNQEPMRIGVPTRTFFEKFVVIKDD---PLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVY 525 (635)
Q Consensus 449 ~~~~~~l~v~~~~~~~~~p~~~~~~~---~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~ 525 (635)
....++|+|++. +.|+||.+.+.+ + ++.||++|+++++++++|++++++..+ |.+++.+|.
T Consensus 17 i~~~~~l~v~~~--~~~pP~~~~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~v~~~~~~----~~~~~~~l~ 80 (271)
T 2iee_A 17 IKDKGKIVVATS--GTLYPTSYHDTDSGSD----------KLTGYEVEVVREAAKRLGLKVEFKEMG----IDGMLTAVN 80 (271)
T ss_dssp HHHHTEEEEEEC--SCBTTTBEEETTTTCC----------EEECHHHHHHHHHHHHTTCEEEEEECC----STTHHHHHH
T ss_pred hccCCeEEEEEC--CCCCCeeEeCCCCCCC----------CceeeHHHHHHHHHHHcCCeEEEEECC----HHHHHHHHH
Confidence 334678999995 467899998765 4 899999999999999999997777664 999999999
Q ss_pred cCcccEEEecccccccccccccccccceeeeeEEEEeCCCC
Q 006683 526 DKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (635)
Q Consensus 526 ~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (635)
+|++|+++++++.+++|.+.++||.||+..+.+++++++.+
T Consensus 81 ~G~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~ 121 (271)
T 2iee_A 81 SGQVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDL 121 (271)
T ss_dssp HTSSSEECSSCBCCHHHHTTEEECCCSEEEEEEEEECTTTG
T ss_pred CCCcCEEEeCCcCChhhccceEEeecceeCCeEEEEECCCC
Confidence 99999998889999999999999999999999999998863
No 54
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.31 E-value=2.3e-12 Score=123.39 Aligned_cols=100 Identities=20% Similarity=0.331 Sum_probs=89.3
Q ss_pred CCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccE
Q 006683 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDA 531 (635)
Q Consensus 452 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~ 531 (635)
.++|+|++ .+.|+||.+.+++| ++.|+++|+++++++++|++++++..+ |.+++.+|.+|++|+
T Consensus 3 ~~~l~v~~--~~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~~----~~~~~~~l~~g~~D~ 66 (239)
T 1lst_A 3 PQTVRIGT--DTTYAPFSSKDAKG----------EFIGFDIDLGNEMCKRMQVKCTWVASD----FDALIPSLKAKKIDA 66 (239)
T ss_dssp CSEEEEEE--CSCBTTTBEECTTC----------CEESHHHHHHHHHHHHHTCEEEEEECC----GGGHHHHHHTTSCSE
T ss_pred cceEEEEE--CCCcCCeeEECCCC----------CEeeEHHHHHHHHHHHHCCeEEEEeCC----HHHHHHHHhCCCCCE
Confidence 46799999 44678999987666 899999999999999999997777654 999999999999999
Q ss_pred EEecccccccccccccccccceeeeeEEEEeCCCCC
Q 006683 532 AVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEE 567 (635)
Q Consensus 532 ~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~~ 567 (635)
++++++.+++|.+.++||.||+..+.+++++++.+.
T Consensus 67 ~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~~ 102 (239)
T 1lst_A 67 IISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPI 102 (239)
T ss_dssp ECSSCBCCHHHHHHCEECSCSBCCCEEEEEETTCCC
T ss_pred EEECcCcCHHHhhceeecccceeCceEEEEeCCCCC
Confidence 988899999999999999999999999999988654
No 55
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.29 E-value=5.2e-12 Score=122.76 Aligned_cols=100 Identities=18% Similarity=0.360 Sum_probs=89.3
Q ss_pred CCCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCccc
Q 006683 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYD 530 (635)
Q Consensus 451 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D 530 (635)
..++|+|++. +.|+||.+.+.+| ++.||++|+++++++++|++++++..+ |.+++.+|.+|++|
T Consensus 27 ~~~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~~----~~~~~~~l~~g~~D 90 (259)
T 4dz1_A 27 EGRTLNVAVS--PASPPMLFKSADG----------KLQGIDLELFSSYCQSRHCKLNITEYA----WDGMLGAVASGQAD 90 (259)
T ss_dssp TTCEEEEEEC--CCBTTTBEECTTC----------CEESHHHHHHHHHHHHHTCEEEEEECC----HHHHHHHHHHTSSS
T ss_pred cCCeEEEEEC--CCCCCeEEECCCC----------CEEEeHHHHHHHHHHHhCCeEEEEEcC----HHHHHHHHhCCCCC
Confidence 4578999994 4678999987666 899999999999999999997776654 99999999999999
Q ss_pred EEEecccccccccccccccccceeeeeEEEEeCCCC
Q 006683 531 AAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (635)
Q Consensus 531 ~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (635)
+++++++.+++|.+.++||.||+..+..++++++++
T Consensus 91 ~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~ 126 (259)
T 4dz1_A 91 VAFSGISITDKRKKVIDFSEPYYINSFYLVSMANHK 126 (259)
T ss_dssp EEEEEEECCHHHHTTEEECCCSEEEEEEEEEETTSC
T ss_pred EEEECCcCCHHHhhccccccchhhCceEEEEEcCCC
Confidence 999999999999999999999999999999987654
No 56
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.27 E-value=5.9e-12 Score=120.86 Aligned_cols=109 Identities=21% Similarity=0.308 Sum_probs=92.0
Q ss_pred CCCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCccc
Q 006683 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYD 530 (635)
Q Consensus 451 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D 530 (635)
..++|+|++ .+.++||.+.+.+| ++.||++||++++++++|++++++..+ |.+++.+|.+|++|
T Consensus 9 ~~~~l~v~~--~~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~~----~~~~~~~l~~g~~D 72 (242)
T 3del_B 9 NSEKFIVGT--NATYPPFEFVDKRG----------EVVGFDIDLAREISNKLGKTLDVREFS----FDALILNLKQHRID 72 (242)
T ss_dssp --CEEEEEE--CSCBTTTBEECTTS----------CEESHHHHHHHHHHHHHTCEEEEEECC----GGGHHHHHHTTSSS
T ss_pred cCCcEEEEe--CCCCCCeeEECCCC----------CEEEeeHHHHHHHHHHcCCceEEEEcC----HHHHHHHHhCCCcC
Confidence 457899999 44678999987766 899999999999999999997776654 99999999999999
Q ss_pred EEEecccccccccccccccccce--eeeeEEEEeCCCCCCcceeecCC
Q 006683 531 AAVGDLTILGNRTEYVEFTQPYA--ESGFSMIVPAKQEESTWMFTKPF 576 (635)
Q Consensus 531 ~~~~~~~~~~~r~~~~~fs~p~~--~~~~~~~v~~~~~~~~~~~l~pf 576 (635)
+++++++.+++|.+.++| .||+ ..+.+++++++.+...+..|+..
T Consensus 73 ~~~~~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~~i~~~~dL~g~ 119 (242)
T 3del_B 73 AVITGMSITPSRLKEILM-IPYYGEEIKHLVLVFKGENKHPLPLTQYR 119 (242)
T ss_dssp EECSSBBCCHHHHTTEEE-EEEEEEEESEEEEEEESCCSCCCCGGGSS
T ss_pred EEEecCcCCHHHHhcccc-eeeeecCCceEEEEeCCCCCCCHHHhCCC
Confidence 998899999999999999 9999 89999999988554445545443
No 57
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.27 E-value=7.9e-12 Score=120.61 Aligned_cols=100 Identities=23% Similarity=0.462 Sum_probs=88.5
Q ss_pred CCCCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcc
Q 006683 450 SNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTY 529 (635)
Q Consensus 450 ~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~ 529 (635)
...++|+|++. +.|+||.+. +++ ++.|+++||++++++++|++++++..+ |..++.+|.+|++
T Consensus 21 ~~~~~l~v~~~--~~~~P~~~~-~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~~----~~~~~~~l~~g~~ 83 (249)
T 4f3p_A 21 SMAKELVVGTD--TSFMPFEFK-QGD----------KYVGFDLDLWAEIAKGAGWTYKIQPMD----FAGLIPALQTQNI 83 (249)
T ss_dssp ---CCEEEEEE--SCBTTTBEE-ETT----------EEESHHHHHHHHHHHHHTCCEEEEEEC----GGGHHHHHHTTSC
T ss_pred ccCceEEEEeC--CCCCCeEEe-cCC----------eEEEEhHHHHHHHHHHcCCceEEEecC----HHHHHHHHHCCCC
Confidence 45688999995 467899887 555 899999999999999999998888765 9999999999999
Q ss_pred cEEEecccccccccccccccccceeeeeEEEEeCCCC
Q 006683 530 DAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (635)
Q Consensus 530 D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (635)
|+++++++.+++|.+.+.||.||+....+++++++.+
T Consensus 84 D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~ 120 (249)
T 4f3p_A 84 DVALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANNT 120 (249)
T ss_dssp SEEEEEEECCHHHHTTEEECSCCEEEEEEEEEETTCC
T ss_pred CEEEeccccCHHHHcCcceecceeeccEEEEEECCCC
Confidence 9999999999999999999999999999999998874
No 58
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.26 E-value=9.7e-12 Score=121.42 Aligned_cols=100 Identities=19% Similarity=0.412 Sum_probs=88.3
Q ss_pred CCCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCccc
Q 006683 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYD 530 (635)
Q Consensus 451 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D 530 (635)
..++|||++. +.|+||.+.+++| ++.|+++||++++++++|++++++..+ +|.+++.+|.+|++|
T Consensus 30 ~~~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~lg~~~~~~~~~---~~~~~~~~l~~G~~D 94 (267)
T 3mpk_A 30 DHPVVKVAVL--NLFAPFTLFRTDE----------QFGGISAAVLQLLQLRTGLDFEIIGVD---TVEELIAKLRSGEAD 94 (267)
T ss_dssp HCSEEEEEEE--TEETTTEECCTTC----------CCBSHHHHHHHHHHHHHCCEEEEEEES---SHHHHHHHHHHTSCS
T ss_pred hCCcEEEEeC--CCCCCeEEECCCC----------cEeeeHHHHHHHHHHHHCCeEEEEecC---CHHHHHHHHHCCCcc
Confidence 4678999994 4578999987666 899999999999999999997777554 499999999999999
Q ss_pred EEEecccccccccccccccccceeeeeEEEEeCCCC
Q 006683 531 AAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (635)
Q Consensus 531 ~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (635)
+++ +++.+++|.+.+.||.||+..+.+++++++..
T Consensus 95 ~~~-~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~ 129 (267)
T 3mpk_A 95 MAG-ALFVNSARESFLSFSRPYVRNGMVIVTRQDPD 129 (267)
T ss_dssp EEE-EEECCGGGTTTEEECSCSEEECEEEEEESSTT
T ss_pred EEe-cccCChhhhcceEechhhccCceEEEEECCCC
Confidence 965 89999999999999999999999999998743
No 59
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.25 E-value=1.1e-11 Score=118.18 Aligned_cols=109 Identities=10% Similarity=0.247 Sum_probs=93.5
Q ss_pred CCCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCccc
Q 006683 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYD 530 (635)
Q Consensus 451 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D 530 (635)
..++|+|++ .+.++||.+.+.+| ++.|+++|+++++++++|++++++..+ |..++.+|.+|++|
T Consensus 9 ~~~~l~v~~--~~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~~----~~~~~~~l~~g~~D 72 (234)
T 3h7m_A 9 RHRTIVVGG--DRDYPPYEFIDQNG----------KPAGYNVELTRAIAEVMGMTVEFRLGA----WSEMFSALKSGRVD 72 (234)
T ss_dssp SSSCEEEEE--ETEETTTEEECTTS----------CEESHHHHHHHHHHHHHTCCEEEEEEC----GGGHHHHHHTTSSS
T ss_pred CCCEEEEEe--cCCCCCeEEECCCC----------CEeeeEHHHHHHHHHHcCCceEEEeCC----HHHHHHHHhCCCee
Confidence 467899999 44678999987666 899999999999999999998887655 99999999999999
Q ss_pred EEEecccccccccccccccccceeeeeEEEEeCCCC-CCcceeecCC
Q 006683 531 AAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE-ESTWMFTKPF 576 (635)
Q Consensus 531 ~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~-~~~~~~l~pf 576 (635)
+ +.+++.+++|.+.+.||.||+....+++++++.+ ...+..|+..
T Consensus 73 ~-~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~dL~g~ 118 (234)
T 3h7m_A 73 V-LQGISWSEKRARQIDFTPPHTIVYHAIFARRDSPPAAGLEDLRGR 118 (234)
T ss_dssp E-EEEEECCHHHHTTEEEEEEEEEEEEEEEEESSSCCCSSGGGGTTS
T ss_pred E-EEeccCCHhHHhhcCCCccccccceEEEEECCCCCCCCHHHhCCC
Confidence 9 4789999999999999999999999999999877 3444444443
No 60
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.24 E-value=5.2e-12 Score=121.48 Aligned_cols=107 Identities=17% Similarity=0.332 Sum_probs=90.5
Q ss_pred CCCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHCC-CcccEEEecCCCChhhHHHHHHcCcc
Q 006683 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLN-YDLPYEFVPHDGVYDDLINGVYDKTY 529 (635)
Q Consensus 451 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~-~~~~~~~~~~~~~~~~~~~~l~~g~~ 529 (635)
..++|+|++.. .|+||.+ +++| ++.|+++||++++++++| ++++++..+ |.+++.+|.+|++
T Consensus 6 ~~~~l~v~~~~--~~~P~~~-~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~~~----~~~~~~~l~~g~~ 68 (246)
T 4eq9_A 6 SKKEIIVATNG--SPRPFIY-EENG----------ELTGYEIEVVRAIFKDSDKYDVKFEKTE----WSGVFAGLDADRY 68 (246)
T ss_dssp -CEEEEEEECC--CSTTTSE-EETT----------EEESHHHHHHHHHHTTCSSEEEEEEECC----HHHHHHHHHTTSC
T ss_pred CCCEEEEEeCC--CcCCeEE-cCCC----------CCcccHHHHHHHHHHHcCCceEEEEeCC----HHHHHHHHhCCCc
Confidence 35679999953 5789988 4555 899999999999999999 997777664 9999999999999
Q ss_pred cEEEecccccccccccccccccceeeeeEEEEeC-CCCCCcceeec
Q 006683 530 DAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPA-KQEESTWMFTK 574 (635)
Q Consensus 530 D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~-~~~~~~~~~l~ 574 (635)
|+++++++.+++|.+.+.||.||+..+.++++++ +.+...+..|+
T Consensus 69 D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~i~~~~dL~ 114 (246)
T 4eq9_A 69 NMAVNNLSYTKERAEKYLYAAPIAQNPNVLVVKKDDSSIKSLDDIG 114 (246)
T ss_dssp SEECSSCCCCHHHHHHEEECCCCEECCEEEEEETTCCSCSSGGGCT
T ss_pred CEEecccccChhhhhceeeccceecCceEEEEECCCCCCCCHHHhC
Confidence 9999899999999999999999999999999998 54444444443
No 61
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.23 E-value=1.3e-11 Score=117.47 Aligned_cols=98 Identities=23% Similarity=0.472 Sum_probs=85.0
Q ss_pred CCCEEEEecCCCCccceEEe--ecCCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcc
Q 006683 452 QEPMRIGVPTRTFFEKFVVI--KDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTY 529 (635)
Q Consensus 452 ~~~l~v~~~~~~~~~p~~~~--~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~ 529 (635)
.++|+|++.. ++||.+. +.++ ++.|+++|+++++++++|++++++..+ .|.+++.+|.+|++
T Consensus 3 ~~~l~v~~~~---~~P~~~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~~---~~~~~~~~l~~g~~ 66 (233)
T 1ii5_A 3 AMALKVGVVG---NPPFVFYGEGKNA----------AFTGISLDVWRAVAESQKWNSEYVRQN---SISAGITAVAEGEL 66 (233)
T ss_dssp SCCEEEEECC---CTTTCEEC---------------CEESHHHHHHHHHHHHHTCCEEEEECS---CHHHHHHHHHTTSC
T ss_pred CceEEEEecC---CCCeEEEecCCCC----------CEEEEeHHHHHHHHHHcCCcEEEEEeC---CHHHHHHHHHCCCc
Confidence 4679999953 6899987 5555 899999999999999999997777662 39999999999999
Q ss_pred cEEEeccccccccc--ccccccccceeeeeEEEEeCCC
Q 006683 530 DAAVGDLTILGNRT--EYVEFTQPYAESGFSMIVPAKQ 565 (635)
Q Consensus 530 D~~~~~~~~~~~r~--~~~~fs~p~~~~~~~~~v~~~~ 565 (635)
|+++++++.+++|. +.+.||.||+....+++++++.
T Consensus 67 D~~~~~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~ 104 (233)
T 1ii5_A 67 DILIGPISVTPERAAIEGITFTQPYFSSGIGLLIPGTA 104 (233)
T ss_dssp SEEEEEEECCHHHHTSTTEEECCCCEEEEEEEEEEGGG
T ss_pred CEEEeeeecCccccccceeEEccceeecCeEEEEECCC
Confidence 99998899999999 9999999999999999999876
No 62
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.23 E-value=1.5e-11 Score=116.89 Aligned_cols=98 Identities=19% Similarity=0.420 Sum_probs=87.7
Q ss_pred CCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccE
Q 006683 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDA 531 (635)
Q Consensus 452 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~ 531 (635)
.++|+|++. +.|+||.+.+.+| ++.|+++|+++++++++|++++++..+ |..++.+|.+|++|+
T Consensus 5 a~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~~----~~~~~~~l~~g~~D~ 68 (229)
T 2y7i_A 5 ARTLHFGTS--ATYAPYEFVDADN----------KIVGFDIDVANAVCKEMQAECSFTNQS----FDSLIPSLRFKKFDA 68 (229)
T ss_dssp CCEEEEEEC--CCBTTTBEECTTS----------CEESHHHHHHHHHHHHTTCEEEEEECC----GGGHHHHHHTTSCSE
T ss_pred CCcEEEEeC--CCcCCceEECCCC----------CCcceeHHHHHHHHHHhCCeEEEEEcC----HHHHHHHHhCCCceE
Confidence 567999994 4678999877666 899999999999999999997777654 999999999999999
Q ss_pred EEecccccccccccccccccceee-eeEEEEeCCC
Q 006683 532 AVGDLTILGNRTEYVEFTQPYAES-GFSMIVPAKQ 565 (635)
Q Consensus 532 ~~~~~~~~~~r~~~~~fs~p~~~~-~~~~~v~~~~ 565 (635)
+++++..+++|.+.+.|+.||+.. ..+++++++.
T Consensus 69 ~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~ 103 (229)
T 2y7i_A 69 VIAGMDMTPKREQQVSFSQPYYEGLSAVVVTRKGA 103 (229)
T ss_dssp ECSSCBCCHHHHTTSEECSCSBCCCCEEEEEETTS
T ss_pred EEecCccCHHHhcceeeccccccCCcEEEEEeCCC
Confidence 988889999999999999999999 9999999876
No 63
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.23 E-value=1.6e-11 Score=116.31 Aligned_cols=98 Identities=22% Similarity=0.445 Sum_probs=86.8
Q ss_pred CCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccE
Q 006683 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDA 531 (635)
Q Consensus 452 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~ 531 (635)
.++|+|++. +.++||.+.++ | ++.|+++|+++++++++|++++++..+ |.+++.++.+|++|+
T Consensus 2 ~~~l~v~~~--~~~~P~~~~~~-g----------~~~G~~~dl~~~~~~~~g~~~~~~~~~----~~~~~~~l~~g~~D~ 64 (226)
T 1wdn_A 2 DKKLVVATD--TAFVPFEFKQG-D----------LYVGFDVDLWAAIAKELKLDYELKPMD----FSGIIPALQTKNVDL 64 (226)
T ss_dssp --CEEEEEE--SSBTTTBEEET-T----------EEESHHHHHHHHHHHHHTCCEEEEEEC----GGGHHHHHHTTSSSE
T ss_pred CceEEEEEC--CCCCCeeEecC-C----------cEEEeeHHHHHHHHHHhCCEEEEEECC----HHHHHHHHhCCCCCE
Confidence 367999995 46789988763 6 899999999999999999998887654 999999999999999
Q ss_pred EEecccccccccccccccccceeeeeEEEEeCCCC
Q 006683 532 AVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (635)
Q Consensus 532 ~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (635)
++++++.+++|.+.+.|+.||+..+.+++++++.+
T Consensus 65 ~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~ 99 (226)
T 1wdn_A 65 ALAGITITDERKKAIDFSDGYYKSGLLVMVKANNN 99 (226)
T ss_dssp EEEEEECCHHHHTTSEECSCCEEEEEEEEEETTCC
T ss_pred EEEcCcCCHHHhCccccccchhcCceEEEEeCCCC
Confidence 99889999999999999999999999999998864
No 64
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.22 E-value=1.6e-11 Score=118.96 Aligned_cols=98 Identities=18% Similarity=0.235 Sum_probs=88.4
Q ss_pred CCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHCCCc-ccEEEecCCCChhhHHHHHHcCccc
Q 006683 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYD-LPYEFVPHDGVYDDLINGVYDKTYD 530 (635)
Q Consensus 452 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~-~~~~~~~~~~~~~~~~~~l~~g~~D 530 (635)
.++|+|++. .|+||.+.+++| ++.||++||++++++++|++ ++++..+ |.+++.++.+|++|
T Consensus 12 ~~~l~v~~~---~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~~~----~~~~~~~l~~g~~D 74 (257)
T 2q88_A 12 QGFARIAIA---NEPPFTAVGADG----------KVSGAAPDVAREIFKRLGVADVVASISE----YGAMIPGLQAGRHD 74 (257)
T ss_dssp HTEEEEEEC---CCTTTCEECTTC----------CEESHHHHHHHHHHHHTTCCEEEEEECC----GGGHHHHHHTTSCS
T ss_pred CCeEEEEcC---CCCCeeEECCCC----------CcccccHHHHHHHHHHcCCCeeeEEeCC----HHHHHHHHHCCCcC
Confidence 567999995 478999877666 89999999999999999998 8877665 99999999999999
Q ss_pred EEEecccccccccccccccccceeeeeEEEEeCCCC
Q 006683 531 AAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (635)
Q Consensus 531 ~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (635)
+++++++.+++|.+.++||.||+..+.+++++++.+
T Consensus 75 ~~~~~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~ 110 (257)
T 2q88_A 75 AITAGLFMKPERCAAVAYSQPILCDAEAFALKKGNP 110 (257)
T ss_dssp EECSCCBCCHHHHTTSEECSCCCEECEEEEEETTCT
T ss_pred EEEecccCCHHHHhccccccchhcCceEEEEECCCc
Confidence 998889999999999999999999999999998875
No 65
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.15 E-value=6.9e-11 Score=115.64 Aligned_cols=108 Identities=19% Similarity=0.367 Sum_probs=92.1
Q ss_pred CCCCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcc
Q 006683 450 SNQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTY 529 (635)
Q Consensus 450 ~~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~ 529 (635)
...++|+|++. +.|+||.+.+ ++ ++.|+++|+++++++++|++++++..+ |..++.+|.+|++
T Consensus 39 ~~~~~l~v~~~--~~~~P~~~~~-~g----------~~~G~~~dl~~~i~~~~g~~v~~~~~~----~~~~~~~l~~G~~ 101 (272)
T 2pvu_A 39 ATKKKVVVGTD--AAFAPFEYMQ-KG----------KIVGFDVDLLDAVMKAAGLDYELKNIG----WDPLFASLQSKEV 101 (272)
T ss_dssp CCCCCEEEEEC--CCBTTTBEEE-TT----------EEESHHHHHHHHHHHHHTCCEEEEECC----HHHHHHHHHHTSS
T ss_pred ccCCeEEEEEC--CCCCCeEEec-CC----------eEEEEHHHHHHHHHHHhCCceEEEECC----HHHHHHHHhCCCC
Confidence 45688999995 4678998874 45 899999999999999999997776654 9999999999999
Q ss_pred cEEEecccccccccccccccccceeeeeEEEEeCCCCCCcceeec
Q 006683 530 DAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTK 574 (635)
Q Consensus 530 D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~l~ 574 (635)
|+++++++.+++|.+.+.|+.||+....+++++++.+...+..|+
T Consensus 102 D~~~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~i~~~~dL~ 146 (272)
T 2pvu_A 102 DMGISGITITDERKQSYDFSDPYFEATQVILVKQGSPVKNALDLK 146 (272)
T ss_dssp SEECSSCBCCHHHHTTEEECSCCEEECEEEEEETTCCCCSGGGGT
T ss_pred CEEEeCCcCCHHHHhcCccchhhhccceEEEEECCCCCCCHHHhC
Confidence 999888899999999999999999999999999987654333343
No 66
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.12 E-value=7.7e-11 Score=116.30 Aligned_cols=107 Identities=14% Similarity=0.161 Sum_probs=89.2
Q ss_pred CCCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHH----CC---CcccEEEecCCCChhhHHHH
Q 006683 451 NQEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDH----LN---YDLPYEFVPHDGVYDDLING 523 (635)
Q Consensus 451 ~~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~----l~---~~~~~~~~~~~~~~~~~~~~ 523 (635)
..++|+|++. +.++||.+.+.+| ++.||++|++++++++ +| ++++++..+ |..++.+
T Consensus 15 ~~~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~ia~~l~~~~G~~~~~v~~~~~~----~~~~~~~ 78 (287)
T 2vha_A 15 KNGVIVVGHR--ESSVPFSYYDNQQ----------KVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPIT----SQNRIPL 78 (287)
T ss_dssp HHTEEEEEEC--SEETTTEEECSSS----------CEESHHHHHHHHHHHHHHHHTTCTTCEEEEEECC----TTTHHHH
T ss_pred hCCeEEEEEc--CCCCCceEECCCC----------CcccccHHHHHHHHHHHHHhcCCCCceEEEEECC----HHHHHHH
Confidence 4578999994 3578999987666 8999999999999976 57 675555443 8899999
Q ss_pred HHcCcccEEEecccccccccccccccccceeeeeEEEEeCCCCCCcceee
Q 006683 524 VYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFT 573 (635)
Q Consensus 524 l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~l 573 (635)
|.+|++|+++++++.+++|.+.++||.||+..+.+++++++.+...+..|
T Consensus 79 l~~g~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~i~sl~dL 128 (287)
T 2vha_A 79 LQNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGDIKDFADL 128 (287)
T ss_dssp HHTTSCSEECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTSSCCSGGGG
T ss_pred HHCCCeeEEeccccCCcchhhcccccceeeecceEEEEECCCCCCCHHHc
Confidence 99999999988899999999999999999999999999988765444434
No 67
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.11 E-value=7.1e-11 Score=111.91 Aligned_cols=97 Identities=21% Similarity=0.430 Sum_probs=81.7
Q ss_pred CCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccE
Q 006683 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDA 531 (635)
Q Consensus 452 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~ 531 (635)
.++|+|++.. ++||.+. ++| ++.|+++|+++++++++|++++++..+ +|.+++.+|.+|++|+
T Consensus 2 ~~~l~v~~~~---~~P~~~~-~~g----------~~~G~~~dl~~~~~~~~g~~~~~~~~~---~~~~~~~~l~~g~~D~ 64 (228)
T 2pyy_A 2 QQPLLVATRV---IPPFVLS-NKG----------ELSGFSIDLWRSIATQIGIESKLIEYS---SVPELISAIKDNKVNL 64 (228)
T ss_dssp --CEEEEECC---BTTTBBC-C-------------CBSHHHHHHHHHHHHHTCCEEEEECS---SHHHHHHHHHTTSCSE
T ss_pred CceEEEEecC---CCCeEEe-cCC----------ceEEEeHHHHHHHHHHhCCcEEEEEcC---CHHHHHHHHHCCCcCE
Confidence 3679999953 6888886 555 789999999999999999998777765 4999999999999999
Q ss_pred EEecccccccccccccccccceeeeeEEEEeCCC
Q 006683 532 AVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQ 565 (635)
Q Consensus 532 ~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~ 565 (635)
++++++.+++|.+.+.|+.||+..+.+++++++.
T Consensus 65 ~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~ 98 (228)
T 2pyy_A 65 GIAAISITAEREQNFDFSLPIFASGLQIMVRNLE 98 (228)
T ss_dssp ECSSCBCCHHHHHHSEECSCSEEEEEEEEEEC--
T ss_pred EEeccccCHHHHccceecccchhcceEEEEECCc
Confidence 9888899999999999999999999999999875
No 68
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.09 E-value=1.2e-10 Score=114.77 Aligned_cols=106 Identities=15% Similarity=0.350 Sum_probs=91.0
Q ss_pred CCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccE
Q 006683 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDA 531 (635)
Q Consensus 452 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~ 531 (635)
.++|||++. +.|+||.+.+.++ ++.|+++|+++++++++|++++++..+ |..++.+|.+|++|+
T Consensus 56 ~~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~G~~v~~~~~~----~~~~~~~l~~G~~D~ 119 (283)
T 2yln_A 56 KGTVTVGTE--GTYAPFTYHDKDG----------KLTGYDVEVTRAVAEKLGVKVEFKETQ----WDSMMAGLKAGRFDV 119 (283)
T ss_dssp TCEEEEEEC--SEETTTEEECTTS----------CEESHHHHHHHHHHHHHTCEEEEEECC----GGGHHHHHHHTSCSE
T ss_pred CCeEEEEEC--CCCCCeeEECCCC----------CEeeehHHHHHHHHHHcCCceEEEECC----HHHHHHHHHCCCcCE
Confidence 568999994 3588999987665 799999999999999999997776654 999999999999999
Q ss_pred EEecccc-cccccccccccccceeeeeEEEEeCCCCCCcceee
Q 006683 532 AVGDLTI-LGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFT 573 (635)
Q Consensus 532 ~~~~~~~-~~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~l 573 (635)
+++.++. +++|.+.++|+.||+..+..++++++.+...+..|
T Consensus 120 ~~~~~~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~~i~s~~dL 162 (283)
T 2yln_A 120 VANQVGLTSPERQATFDKSEPYSWSGAVLVAHNDSNIKSIADI 162 (283)
T ss_dssp ECSSCCCCSHHHHHHEEECSCSEEECEEEEEETTCSCCSGGGC
T ss_pred EEecCccCChhhhcceEeccCeeeecEEEEEECCCCCCCHHHh
Confidence 9888888 99999999999999999999999997664333333
No 69
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.05 E-value=2.6e-10 Score=112.86 Aligned_cols=106 Identities=19% Similarity=0.295 Sum_probs=91.0
Q ss_pred CCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHC---CCcccEEEecCCCChhhHHHHHHcCc
Q 006683 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHL---NYDLPYEFVPHDGVYDDLINGVYDKT 528 (635)
Q Consensus 452 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l---~~~~~~~~~~~~~~~~~~~~~l~~g~ 528 (635)
.++|+|++. +.++||.+.++++ ++.|+++|+++++++++ |++++++..+ |..++.++.+|+
T Consensus 43 ~~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~~~~g~~~~~~~~~----~~~~~~~l~~G~ 106 (292)
T 1xt8_A 43 NGVVRIGVF--GDKPPFGYVDEKG----------NNQGYDIALAKRIAKELFGDENKVQFVLVE----AANRVEFLKSNK 106 (292)
T ss_dssp HSSEEEEEC--SEETTTEEECTTS----------CEESHHHHHHHHHHHHHHSCTTCEEEEECC----GGGHHHHHHTTS
T ss_pred CCeEEEEEC--CCCCCeeEECCCC----------CEeeEhHHHHHHHHHHhccCCceEEEEEcC----HHHHHHHHhCCC
Confidence 467999995 4578999987655 78999999999999999 9997777655 899999999999
Q ss_pred ccEEEecccccccccccccccccceeeeeEEEEeCCCCCCcceee
Q 006683 529 YDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFT 573 (635)
Q Consensus 529 ~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~l 573 (635)
+|++++++..+++|.+.+.|+.||+..+..++++++++...+..|
T Consensus 107 ~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~i~~~~dL 151 (292)
T 1xt8_A 107 VDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSNITSVEDL 151 (292)
T ss_dssp CSEECSSCBCCHHHHTTEEECCCCEEEEEEEEEETTCCCCSSGGG
T ss_pred eeEEeecCCCCcchhcceeeeccceecceEEEEECCCCCCCHHHh
Confidence 999988888999999999999999999999999987654333333
No 70
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.03 E-value=3.1e-10 Score=112.21 Aligned_cols=107 Identities=19% Similarity=0.307 Sum_probs=91.6
Q ss_pred CCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHC---CCcccEEEecCCCChhhHHHHHHcCc
Q 006683 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHL---NYDLPYEFVPHDGVYDDLINGVYDKT 528 (635)
Q Consensus 452 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l---~~~~~~~~~~~~~~~~~~~~~l~~g~ 528 (635)
.++|||++. +.|+||.+.++++ ++.|+++|+++.+++++ |++++++..+ |..++..|.+|+
T Consensus 54 ~~~l~vg~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~~~~g~~v~~~~~~----~~~~~~~l~~G~ 117 (291)
T 2yjp_A 54 KGVIRIGVF--GDKPPFGYVDANG----------KNQGFDVEIAKDLAKDLLGSPDKVEFVLTE----AANRVEYVRSGK 117 (291)
T ss_dssp HTCEEEEEC--SEETTTEEECTTS----------CEESHHHHHHHHHHHHHHSCGGGEEEEECC----GGGHHHHHHTTS
T ss_pred CCeEEEEEc--CCCCCceEECCCC----------CEeehHHHHHHHHHHHhccCCceEEEEEcc----HHHHHHHHhCCC
Confidence 467999995 4578999987666 89999999999999999 9997776654 899999999999
Q ss_pred ccEEEecccccccccccccccccceeeeeEEEEeCCCCCCcceeec
Q 006683 529 YDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTWMFTK 574 (635)
Q Consensus 529 ~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~~~l~ 574 (635)
+|++++++..+++|.+.+.|+.||+..+..++++++++.+.+..|+
T Consensus 118 ~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~~i~sl~dL~ 163 (291)
T 2yjp_A 118 VDLILANFTQTPERAEAVDFADPYMKVALGVVSPKNKPITDMAQLK 163 (291)
T ss_dssp CSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTSCCCSGGGGT
T ss_pred eeEEEeCCCCChHHHccceeccCeeecceEEEEeCCCCCCCHHHhC
Confidence 9999888889999999999999999999999999987544444443
No 71
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.01 E-value=4e-10 Score=109.68 Aligned_cols=107 Identities=21% Similarity=0.319 Sum_probs=89.8
Q ss_pred CCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccE
Q 006683 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDA 531 (635)
Q Consensus 452 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~ 531 (635)
.++|+|++. +.++||.+.+.++ ++.|+++|+++++++++|++++++..+ |.+++.++.+|++|+
T Consensus 30 ~~~l~v~~~--~~~~P~~~~~~~g----------~~~G~~~dl~~~i~~~~g~~~~~~~~~----~~~~~~~l~~g~~D~ 93 (268)
T 3qax_A 30 NRIWIVGTN--ATYPPFEYVDAQG----------EVVGFDIDLAKAISEKLGKQLEVREFA----FDALILNLKKHRIDA 93 (268)
T ss_dssp -CEEEEEEC--SCBTTTBEECTTS----------CEESHHHHHHHHHHHHHTCEEEEEECC----GGGHHHHHHHTSSSE
T ss_pred CCeEEEEEC--CCCCCceEECCCC----------CEEEEEHHHHHHHHHHhCCeEEEEecC----HHHHHHHHhCCCccE
Confidence 567999994 4678999887666 899999999999999999997776553 999999999999999
Q ss_pred EEecccccccccccccccccce--eeeeEEEEeCC-CCCCcceeecC
Q 006683 532 AVGDLTILGNRTEYVEFTQPYA--ESGFSMIVPAK-QEESTWMFTKP 575 (635)
Q Consensus 532 ~~~~~~~~~~r~~~~~fs~p~~--~~~~~~~v~~~-~~~~~~~~l~p 575 (635)
++++++.+++|.+.++| .||+ ..+..++++++ .+.+.+..|+.
T Consensus 94 ~~~~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~~~i~~~~dL~g 139 (268)
T 3qax_A 94 ILAGMSITPSRQKEIAL-LPYYGDEVQELMVVSKRSLETPVLPLTQY 139 (268)
T ss_dssp ECSCCBCCHHHHTTSEE-EEEECCCBCEEEEEEETTSCSCCCCGGGS
T ss_pred EeecCccCHhHhcceee-ecceecccceEEEEECCCCCCCCHHHhCC
Confidence 98889999999999999 9999 99999999987 33344444443
No 72
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.01 E-value=3e-10 Score=110.70 Aligned_cols=98 Identities=18% Similarity=0.352 Sum_probs=86.6
Q ss_pred CCCEEEEecCCCCccceEE---eecCCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCc
Q 006683 452 QEPMRIGVPTRTFFEKFVV---IKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKT 528 (635)
Q Consensus 452 ~~~l~v~~~~~~~~~p~~~---~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~ 528 (635)
.++|+|++. +.|+||.+ .+.+| ++.|+++|+++++++++|++++++..+ |..++.++.+|+
T Consensus 38 ~~~l~v~~~--~~~~P~~~~~~~~~~g----------~~~G~~~dl~~~~~~~~g~~~~~~~~~----~~~~~~~l~~g~ 101 (269)
T 4i62_A 38 KGKLVVALN--PDFAPFEYQKVVDGKN----------QIVGSDIELAKAIATELGVELELSPMS----FDNVLASVQSGK 101 (269)
T ss_dssp HTEEEEEEC--SCBTTTBEEEEETTEE----------EEESHHHHHHHHHHHHHTCEEEEEECC----HHHHHHHHHTTS
T ss_pred CCeEEEEec--CCCCCceeecccCCCC----------cEeeecHHHHHHHHHHHCCceEEEEcC----HHHHHHHHhCCC
Confidence 457999994 46789988 55444 899999999999999999997776543 999999999999
Q ss_pred ccEEEecccccccccccccccccceeeeeEEEEeCCC
Q 006683 529 YDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQ 565 (635)
Q Consensus 529 ~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~ 565 (635)
+|+++++++.+++|.+.+.|+.||+..+..++++++.
T Consensus 102 ~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~ 138 (269)
T 4i62_A 102 ADLAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSD 138 (269)
T ss_dssp CSEECSSCBCCHHHHTTEEECSCCEECCEEEEEEGGG
T ss_pred ccEEecCCcCCHhHhhceecccchhhcceEEEEECCc
Confidence 9999989999999999999999999999999999873
No 73
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=98.98 E-value=6.4e-10 Score=107.57 Aligned_cols=103 Identities=15% Similarity=0.307 Sum_probs=88.5
Q ss_pred CCCEEEEecCCCCccceEEee-cCCCCCCCCCCCccccceeHHHHHHHHHHC---CCcccEEEecCCCChhhHHHHHHcC
Q 006683 452 QEPMRIGVPTRTFFEKFVVIK-DDPLNGNSNDKNLRYDGFSIELFRLVVDHL---NYDLPYEFVPHDGVYDDLINGVYDK 527 (635)
Q Consensus 452 ~~~l~v~~~~~~~~~p~~~~~-~~~~~~~~g~~~~~~~G~~~dl~~~la~~l---~~~~~~~~~~~~~~~~~~~~~l~~g 527 (635)
.++|||++. +.++||.+.+ +++ ++.|+++|+++++++++ |++++++..+ |.+++..|.+|
T Consensus 37 ~~~l~vg~~--~~~~p~~~~~~~~g----------~~~G~~~~l~~~~~~~~~~pg~~v~~~~~~----~~~~~~~l~~g 100 (259)
T 2v25_A 37 KGQLIVGVK--NDVPHYALLDQATG----------EIKGFEVDVAKLLAKSILGDDKKIKLVAVN----AKTRGPLLDNG 100 (259)
T ss_dssp HTCEEEEEC--SEETTTEEEETTTT----------EEESHHHHHHHHHHHHHHSCTTSEEEEECC----TTTHHHHHHTT
T ss_pred CCeEEEEEC--CCCCCeEEEECCCC----------eEEEeeHHHHHHHHHHhcCCCcceEEEEcC----HHHHHHHHhCC
Confidence 467999994 4578998876 345 89999999999999999 9997776654 88999999999
Q ss_pred cccEEEecccccccccccccccccceeeeeEEEEeCCCCCCcc
Q 006683 528 TYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEESTW 570 (635)
Q Consensus 528 ~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~ 570 (635)
++|++++++..+++|.+.+.|+.||+..+..++++++.+...+
T Consensus 101 ~~D~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~ 143 (259)
T 2v25_A 101 SVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKKYKSL 143 (259)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEEGGGCCCSG
T ss_pred CCCEEEecCccCHHHHhcCcccccceeCceEEEEeCCCCCCCH
Confidence 9999988888899999999999999999999999987654333
No 74
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=98.52 E-value=1e-05 Score=81.18 Aligned_cols=215 Identities=10% Similarity=-0.029 Sum_probs=137.2
Q ss_pred CCeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCC--eEEEEcCCCh-
Q 006683 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEK--VKVIAGMETW- 107 (635)
Q Consensus 32 ~~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~--v~aiiG~~~s- 107 (635)
+...+||+++|.. ..+...+..+++.+.++.+ +++ .+.++..++....+.+..++ ..+ +.+||.....
T Consensus 3 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g-----~~l--~~~~~~~~~~~~~~~i~~l~-~~~~~vdgiIi~~~~~ 74 (332)
T 2rjo_A 3 LGQTTLACSFRSLTNPYYTAFNKGAQSFAKSVG-----LPY--VPLTTEGSSEKGIADIRALL-QKTGGNLVLNVDPNDS 74 (332)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHHT-----CCE--EEEECTTCHHHHHHHHHHHH-HHTTTCEEEEECCSSH
T ss_pred CCccEEEEEecCCCcHHHHHHHHHHHHHHHHcC-----CEE--EEecCCCCHHHHHHHHHHHH-HCCCCCCEEEEeCCCH
Confidence 3457899999954 4444566677777766643 334 45567777777677777777 556 9887764333
Q ss_pred hhHHHHHHhhccCCccEEeecCCCCCCCCCCCCC--ceEEEEecCcHHHHHHHHHHHHH--CCCeEEEEEEEcCC--CCC
Q 006683 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRW--PYLIRMASNDSEQMKCIADLARK--YNWRRVAAIYEDNV--YGG 181 (635)
Q Consensus 108 ~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~--p~~~r~~p~~~~~~~al~~~l~~--~~w~~vaii~~~~~--~g~ 181 (635)
.........+...++|+|..... .+......+ +.+..+..++...+..++++|.. .|.++|++|..... ..
T Consensus 75 ~~~~~~~~~~~~~~iPvV~~~~~--~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~- 151 (332)
T 2rjo_A 75 ADARVIVEACSKAGAYVTTIWNK--PKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPA- 151 (332)
T ss_dssp HHHHHHHHHHHHHTCEEEEESCC--CTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHH-
T ss_pred HHHHHHHHHHHHCCCeEEEECCC--CCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccH-
Confidence 22223445556679999988654 232111111 35667888888888889999876 69999999986533 23
Q ss_pred CcchHHHHHHHHhcc-CCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc---CceEEEEecCChhHHHHHHHHHHHcCC
Q 006683 182 DSGKLALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK---QSRVFIVLQASLDMTIHLFTEANRMGL 257 (635)
Q Consensus 182 ~~~~~~~~~~~l~~~-g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~---~~~vii~~~~~~~~~~~~l~~a~~~g~ 257 (635)
....+.+++.+++. | +++..... ... ...+....++++.+. .+++|++ .+...+..+++++++.|+
T Consensus 152 -~~R~~Gf~~al~~~pg-i~~~~~~~--~~~----~~~~~~~~~~~ll~~~~~~~~aI~~--~nd~~A~g~~~al~~~G~ 221 (332)
T 2rjo_A 152 -IERKAGLDAALKKFPG-IQLLDFQV--ADW----NSQKAFPIMQAWMTRFNSKIKGVWA--ANDDMALGAIEALRAEGL 221 (332)
T ss_dssp -HHHHHHHHHHHHTCTT-EEEEEEEE--CTT----CHHHHHHHHHHHHHHHGGGEEEEEE--SSHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHHhCCC-cEEEeecc--CCC----CHHHHHHHHHHHHHhcCCCeeEEEE--CCCchHHHHHHHHHHcCC
Confidence 44567788999998 8 87764321 111 113334455554433 5777775 556678889999999998
Q ss_pred CCCCeEEEeeC
Q 006683 258 VGKDSVWIVTN 268 (635)
Q Consensus 258 ~~~~~~~i~~~ 268 (635)
. .+...++.+
T Consensus 222 ~-~di~vvg~D 231 (332)
T 2rjo_A 222 A-GQIPVTGMD 231 (332)
T ss_dssp B-TTBCEECSB
T ss_pred C-CCCEEEeec
Confidence 7 444444433
No 75
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=98.51 E-value=6.8e-06 Score=81.67 Aligned_cols=209 Identities=12% Similarity=0.036 Sum_probs=134.4
Q ss_pred EEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEc-CCChhhHHHH
Q 006683 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (635)
Q Consensus 35 i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (635)
++||++.|....+......+++.+.++.+ +++.+.. .+..++....+.+.+++ ..++.+||. +..+......
T Consensus 2 ~~Ig~i~~~~~~~~~~~~~gi~~~~~~~g-----~~~~~~~-~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~~~~~~ 74 (313)
T 2h3h_A 2 LTIGVIGKSVHPYWSQVEQGVKAAGKALG-----VDTKFFV-PQKEDINAQLQMLESFI-AEGVNGIAIAPSDPTAVIPT 74 (313)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHHT-----CEEEEEC-CSSSCHHHHHHHHHHHH-HTTCSEEEECCSSTTTTHHH
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHHcC-----CEEEEEC-CCCCCHHHHHHHHHHHH-HcCCCEEEEeCCChHHHHHH
Confidence 68999998764355566777777777643 4454332 24567777777788887 678887764 4443332334
Q ss_pred HHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHC--CCeEEEEEEEcCC--CCCCcchHHHH
Q 006683 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNV--YGGDSGKLALL 189 (635)
Q Consensus 114 ~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~--~w~~vaii~~~~~--~g~~~~~~~~~ 189 (635)
...+...++|+|..... .+. . +.+..+.+++...+..++++|... |.++|++|..... .. ....+.+
T Consensus 75 ~~~~~~~~iPvV~~~~~--~~~--~---~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~--~~R~~gf 145 (313)
T 2h3h_A 75 IKKALEMGIPVVTLDTD--SPD--S---GRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNS--LQRIQGF 145 (313)
T ss_dssp HHHHHHTTCCEEEESSC--CTT--S---CCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHH--HHHHHHH
T ss_pred HHHHHHCCCeEEEeCCC--CCC--c---ceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccH--HHHHHHH
Confidence 45556689999988654 221 1 223346688888888889988766 8899999987532 23 4456778
Q ss_pred HHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEee
Q 006683 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (635)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~~ 267 (635)
++.+++.| +++......... ..+....++++.+. ++++|++ . +...+..+++++++.|+. .+...++.
T Consensus 146 ~~~l~~~g-~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~ai~~-~-~d~~a~g~~~al~~~G~p-~dv~vvg~ 215 (313)
T 2h3h_A 146 KDAIKDSE-IEIVDILNDEED------GARAVSLAEAALNAHPDLDAFFG-V-YAYNGPAQALVVKNAGKV-GKVKIVCF 215 (313)
T ss_dssp HHHHTTSS-CEEEEEEECSSC------HHHHHHHHHHHHHHCTTCCEEEE-C-STTHHHHHHHHHHHTTCT-TTSEEEEE
T ss_pred HHHhcCCC-CEEEEeecCCCC------HHHHHHHHHHHHHHCcCceEEEE-c-CCCccHHHHHHHHHcCCC-CCeEEEEe
Confidence 89999989 887643321111 13344555555543 5688876 4 445677889999999953 33455554
Q ss_pred Cc
Q 006683 268 NT 269 (635)
Q Consensus 268 ~~ 269 (635)
+.
T Consensus 216 d~ 217 (313)
T 2h3h_A 216 DT 217 (313)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 76
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=98.45 E-value=7.3e-06 Score=80.60 Aligned_cols=212 Identities=10% Similarity=0.059 Sum_probs=133.9
Q ss_pred CCeEEEEEEeeC---CCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChh
Q 006683 32 EEVTKIGAIVDA---NSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (635)
Q Consensus 32 ~~~i~IG~i~p~---s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (635)
+...+||+++|. +..+......+++.+.++. |++ +.+.++..++....+....++ ..++.+||......
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~-----g~~--~~~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~~~ 88 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK-----GRQ--LLLADGKHSAEEERQAIQYLL-DLRCDAIMIYPRFL 88 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT-----TCE--EEEECCTTSHHHHHHHHHHHH-HTTCSEEEEECSSS
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHC-----CCE--EEEEeCCCCHHHHHHHHHHHH-hcCCCEEEEecCCC
Confidence 356899999996 4556667778888777763 344 455677778877777777777 67888777643322
Q ss_pred hHHHHHHhhcc-CCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCC--CCCCcch
Q 006683 109 ETAVVAEIASR-VQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGK 185 (635)
Q Consensus 109 ~~~~v~~~~~~-~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~--~g~~~~~ 185 (635)
....+ ..+.. .++|+|..... .+ + +.+..+..++...+..++++|...|.++|++|..+.. .+ ...
T Consensus 89 ~~~~~-~~l~~~~~iPvV~~~~~--~~---~---~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~--~~R 157 (296)
T 3brq_A 89 SVDEI-DDIIDAHSQPIMVLNRR--LR---K---NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTS--IER 157 (296)
T ss_dssp CHHHH-HHHHHTCSSCEEEESCC--CS---S---SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHH--HHH
T ss_pred ChHHH-HHHHhcCCCCEEEEccc--cC---C---CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEcCCCCCccH--HHH
Confidence 22223 34455 79999987644 22 1 1223466777777888889988789999999986643 23 445
Q ss_pred HHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhh--cCceEEEEecCChhHHHHHHHHHHHcCCCC-CCe
Q 006683 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVG-KDS 262 (635)
Q Consensus 186 ~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~--~~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~ 262 (635)
.+.+++.+++.| +.+.....+.... ...+....++++.+ .++++|++ .+...+..+++++++.|+.- .+.
T Consensus 158 ~~gf~~~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di 230 (296)
T 3brq_A 158 LAGYKDALAQHG-IALNEKLIANGKW----TPASGAEGVEMLLERGAKFSALVA--SNDDMAIGAMKALHERGVAVPEQV 230 (296)
T ss_dssp HHHHHHHHHTTT-CCCCGGGEECCCS----SHHHHHHHHHHHHTC--CCSEEEE--SSHHHHHHHHHHHHHHTCCTTTTC
T ss_pred HHHHHHHHHHcC-CCCChhhEEeCCC----ChhHHHHHHHHHHhCCCCCCEEEE--CChHHHHHHHHHHHHcCCCCCCce
Confidence 677888999988 7654321222111 11333455555543 36788876 45667788899999999863 344
Q ss_pred EEEeeCc
Q 006683 263 VWIVTNT 269 (635)
Q Consensus 263 ~~i~~~~ 269 (635)
..++.+.
T Consensus 231 ~vvg~d~ 237 (296)
T 3brq_A 231 SVIGFDD 237 (296)
T ss_dssp EEEEESC
T ss_pred EEEeecC
Confidence 4555443
No 77
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=98.44 E-value=1.4e-05 Score=78.42 Aligned_cols=212 Identities=12% Similarity=0.023 Sum_probs=137.7
Q ss_pred CeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEE-cCCChhhH
Q 006683 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA-GMETWEET 110 (635)
Q Consensus 33 ~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~ 110 (635)
..-+||+++|.. ..+......+++.+.++.+ +++.+.++..++....+....++ ..++.+|| .|..+...
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g-------~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~~~~ 75 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERLG-------GTAIALDAGRNDQTQVSQIQTLI-AQKPDAIIEQLGNLDVL 75 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHTT-------CEEEEEECTTCHHHHHHHHHHHH-HHCCSEEEEESSCHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHcC-------CEEEEEcCCCCHHHHHHHHHHHH-HcCCCEEEEeCCChhhh
Confidence 457899999965 3344456667777666643 34455677778877777777777 67787666 45554455
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHH--CCCeEEEEEEEcCCCCCCcchHHH
Q 006683 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK--YNWRRVAAIYEDNVYGGDSGKLAL 188 (635)
Q Consensus 111 ~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~--~~w~~vaii~~~~~~g~~~~~~~~ 188 (635)
......+...++|+|..... .+ + .+..+..+....+..++++|.. .|-++++++.............+.
T Consensus 76 ~~~~~~~~~~~iPvV~~~~~--~~---~----~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~g 146 (291)
T 3l49_A 76 NPWLQKINDAGIPLFTVDTA--TP---H----AINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQ 146 (291)
T ss_dssp HHHHHHHHHTTCCEEEESCC--CT---T----CSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEecCC--CC---C----cCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHH
Confidence 56666777789999988655 22 1 2335678888888899999877 899999999754332100334667
Q ss_pred HHHHHhcc-CCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc-----CceEEEEecCChhHHHHHHHHHHHcCCCCCCe
Q 006683 189 LAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-----QSRVFIVLQASLDMTIHLFTEANRMGLVGKDS 262 (635)
Q Consensus 189 ~~~~l~~~-g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~-----~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~ 262 (635)
+++.+++. | +++.....+.... .........++++.+. ++++|++ .+...+..+++++++.|+. +.
T Consensus 147 f~~~l~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~--di 218 (291)
T 3l49_A 147 MKYVLEAFPD-VKIIEPELRDVIP---NTIQSAYSNVTDMLTKYPNEGDVGAIWA--CWDVPMIGATQALQAAGRT--DI 218 (291)
T ss_dssp HHHHHHTCTT-EEECSSCBCCCSS---SHHHHHHHHHHHHHHHCCSTTSCCEEEE--SSHHHHHHHHHHHHHTTCC--SC
T ss_pred HHHHHHHCCC-CEEEeeeccCCCC---CCHHHHHHHHHHHHHhCCCcCCcCEEEE--CCCchHHHHHHHHHHcCCC--Ce
Confidence 88888888 6 7654332222221 1112334455555443 5788765 6777888899999999987 44
Q ss_pred EEEeeCc
Q 006683 263 VWIVTNT 269 (635)
Q Consensus 263 ~~i~~~~ 269 (635)
..++.+.
T Consensus 219 ~vvg~d~ 225 (291)
T 3l49_A 219 RTYGVDG 225 (291)
T ss_dssp EEEEEEC
T ss_pred EEEEecC
Confidence 5555443
No 78
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=98.41 E-value=2.2e-05 Score=78.36 Aligned_cols=212 Identities=9% Similarity=0.100 Sum_probs=130.1
Q ss_pred CCeEEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhh-H
Q 006683 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE-T 110 (635)
Q Consensus 32 ~~~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~-~ 110 (635)
+.+.+||++.|.+..+......+++.+.++. .|++ +.+.++..++....+.+..++ ..++.+||....+.. .
T Consensus 4 ~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~----~g~~--l~i~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~~~ 76 (325)
T 2x7x_A 4 TPHFRIGVAQCSDDSWRHKMNDEILREAMFY----NGVS--VEIRSAGDDNSKQAEDVHYFM-DEGVDLLIISANEAAPM 76 (325)
T ss_dssp --CCEEEEEESCCSHHHHHHHHHHHHHHTTS----SSCE--EEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCSSHHHH
T ss_pred CCCeEEEEEecCCCHHHHHHHHHHHHHHHHc----CCcE--EEEeCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCCHHHH
Confidence 4568999999973333334445555444332 1444 445667778877777777777 678888776444332 2
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHC--CCeEEEEEEEcCC--CCCCcchH
Q 006683 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNV--YGGDSGKL 186 (635)
Q Consensus 111 ~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~--~w~~vaii~~~~~--~g~~~~~~ 186 (635)
......+...++|+|..... .+ .. +.+..+.+++...+..++++|... |.++|++|..... .. ....
T Consensus 77 ~~~~~~~~~~~iPvV~~~~~--~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~--~~R~ 147 (325)
T 2x7x_A 77 TPIVEEAYQKGIPVILVDRK--IL---SD--KYTAYIGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPA--MERH 147 (325)
T ss_dssp HHHHHHHHHTTCCEEEESSC--CS---SS--CSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHH--HHHH
T ss_pred HHHHHHHHHCCCeEEEeCCC--CC---Cc--ceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCccH--HHHH
Confidence 33445556689999987644 22 11 123446678888888888888664 8899999986533 22 3446
Q ss_pred HHHHHHHhcc-CCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCCCCCCeE
Q 006683 187 ALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSV 263 (635)
Q Consensus 187 ~~~~~~l~~~-g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~ 263 (635)
+.+++.+++. | +++.... . ... + ..+....++++.+. .+++|++ .+...+..+++++++.|+ +.+..
T Consensus 148 ~Gf~~al~~~pg-~~~~~~~-~-~~~---~-~~~~~~~~~~ll~~~~~~~aI~~--~nd~~A~g~~~al~~~Gi-p~dv~ 217 (325)
T 2x7x_A 148 QGFMAAISKFPD-IKLIDKA-D-AAW---E-RGPAEIEMDSMLRRHPKIDAVYA--HNDRIAPGAYQAAKMAGR-EKEMI 217 (325)
T ss_dssp HHHHHHHHTCTE-EEEEEEE-E-CTT---S-HHHHHHHHHHHHHHCSCCCEEEE--SSTTHHHHHHHHHHHTTC-TTSSE
T ss_pred HHHHHHHHhCCC-CEEEeee-c-CCC---C-HHHHHHHHHHHHHhCCCCCEEEE--CCCchHHHHHHHHHHcCC-CCCeE
Confidence 7788889888 8 7765422 1 111 1 12333445554432 5788876 455567788899999997 34455
Q ss_pred EEeeCc
Q 006683 264 WIVTNT 269 (635)
Q Consensus 264 ~i~~~~ 269 (635)
.++.+.
T Consensus 218 vig~D~ 223 (325)
T 2x7x_A 218 FVGIDA 223 (325)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 555543
No 79
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=98.40 E-value=1.6e-05 Score=77.23 Aligned_cols=210 Identities=10% Similarity=0.039 Sum_probs=139.2
Q ss_pred EEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCC-eEEEEcCC-ChhhHH
Q 006683 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEK-VKVIAGME-TWEETA 111 (635)
Q Consensus 35 i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~-v~aiiG~~-~s~~~~ 111 (635)
++||++.|.. ..+......+++.+.++. |+++.+...++..++....+.+..++ ..+ +.+||-.. .+....
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~i~~l~-~~~~vdgii~~~~~~~~~~ 74 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEA-----GVTLLHRSTKDDGDIAGQIQILSYHL-SQAPPDALILAPNSAEDLT 74 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHH-----TCEEEECCCSSTTCHHHHHHHHHHHH-HHSCCSEEEECCSSTTTTH
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHc-----CCEEEEECCCCCCCHHHHHHHHHHHH-HhCCCCEEEEeCCCHHHHH
Confidence 5899999965 445567777888777775 35565554446778888788888888 455 88777543 333444
Q ss_pred HHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHC----CCeEEEEEEEcCC--CCCCcch
Q 006683 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY----NWRRVAAIYEDNV--YGGDSGK 185 (635)
Q Consensus 112 ~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~----~w~~vaii~~~~~--~g~~~~~ 185 (635)
.....+...++|+|..... .+ .. +....+.+++...+..++++|... |.++++++..... .. ...
T Consensus 75 ~~~~~~~~~~ipvV~~~~~--~~---~~--~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~--~~R 145 (276)
T 3ksm_A 75 PSVAQYRARNIPVLVVDSD--LA---GD--AHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNAST--DQR 145 (276)
T ss_dssp HHHHHHHHTTCCEEEESSC--CS---SS--CSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHH--HHH
T ss_pred HHHHHHHHCCCcEEEEecC--CC---CC--CcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhH--HHH
Confidence 5556677789999988655 22 11 122346688888889999998776 8999999986533 22 455
Q ss_pred HHHHHHHHhcc-CCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCCCCCCe
Q 006683 186 LALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDS 262 (635)
Q Consensus 186 ~~~~~~~l~~~-g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~ 262 (635)
.+.+++.+++. | +++.... .... ........++++.+. ++++|++ .+...+..+++++++.|+ +.+.
T Consensus 146 ~~gf~~~l~~~~~-~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~-p~di 215 (276)
T 3ksm_A 146 EQGFLDVLRKHDK-IRIIAAP--YAGD----DRGAARSEMLRLLKETPTIDGLFT--PNESTTIGALVAIRQSGM-SKQF 215 (276)
T ss_dssp HHHHHHHHTTCTT-EEEEECC--BCCS----SHHHHHHHHHHHHHHCSCCCEEEC--CSHHHHHHHHHHHHHTTC-TTSS
T ss_pred HHHHHHHHHhCCC-cEEEEEe--cCCC----cHHHHHHHHHHHHHhCCCceEEEE--CCchhhhHHHHHHHHcCC-CCCe
Confidence 67888899888 7 7766322 1111 113344455555443 5677764 566778889999999998 4445
Q ss_pred EEEeeCc
Q 006683 263 VWIVTNT 269 (635)
Q Consensus 263 ~~i~~~~ 269 (635)
..++.+.
T Consensus 216 ~vig~d~ 222 (276)
T 3ksm_A 216 GFIGFDQ 222 (276)
T ss_dssp EEEEESC
T ss_pred EEEEeCC
Confidence 5555544
No 80
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=98.39 E-value=1.7e-05 Score=77.72 Aligned_cols=211 Identities=13% Similarity=0.063 Sum_probs=133.7
Q ss_pred CeEEEEEEeeCC---CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCCh-h
Q 006683 33 EVTKIGAIVDAN---SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETW-E 108 (635)
Q Consensus 33 ~~i~IG~i~p~s---~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s-~ 108 (635)
...+||++.|.. ..+......+++.+.++.+ +++.+...++..++....+.+..++ ..++.+||..... .
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g-----~~~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~~~~ 77 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYE-----IKLEFMAPEKEEDYLVQNELIEEAI-KRKPDVILLAAADYE 77 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHT-----CEEEECCCSSTTCHHHHHHHHHHHH-HTCCSEEEECCSCTT
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcC-----CEEEEecCCCCCCHHHHHHHHHHHH-HhCCCEEEEeCCChH
Confidence 456899999964 3445566677777776653 5555544443677777777777777 6788877754333 2
Q ss_pred hHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHC-C-CeEEEEEEEcCC--CCCCcc
Q 006683 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY-N-WRRVAAIYEDNV--YGGDSG 184 (635)
Q Consensus 109 ~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~-~-w~~vaii~~~~~--~g~~~~ 184 (635)
........+...++|+|..... .+. . +.+..+.++....+..++++|... | .++|++|..... .. ..
T Consensus 78 ~~~~~~~~~~~~~iPvV~~~~~--~~~---~--~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~--~~ 148 (289)
T 3brs_A 78 KTYDAAKEIKDAGIKLIVIDSG--MKQ---D--IADITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTA--MD 148 (289)
T ss_dssp TTHHHHTTTGGGTCEEEEESSC--CSS---C--CCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHH--HH
T ss_pred HhHHHHHHHHHCCCcEEEECCC--CCC---C--cceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccH--HH
Confidence 2223445566689999987644 221 1 234457788888888889988664 6 899999986533 23 44
Q ss_pred hHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCCCCCCe
Q 006683 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDS 262 (635)
Q Consensus 185 ~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~ 262 (635)
..+.+++.+++.| ..+.... ..... ..+....++++.+. .+++|++ .+...+..+++++++.|+. .+.
T Consensus 149 R~~gf~~~l~~~g-~~~~~~~-~~~~~-----~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~G~~-~di 218 (289)
T 3brs_A 149 REEGLKIGLSDDS-NKIEAIY-YCDSN-----YDKAYDGTVELLTKYPDISVMVG--LNQYSATGAARAIKDMSLE-AKV 218 (289)
T ss_dssp HHHHHHHHHGGGG-GGEEEEE-ECTTC-----HHHHHHHHHHHHHHCTTEEEEEE--SSHHHHHHHHHHHHHTTCT-TTS
T ss_pred HHHHHHHHHHhCC-CcEEeee-cCCCC-----HHHHHHHHHHHHHhCCCceEEEE--CCCcchHHHHHHHHhcCCC-CCE
Confidence 5677888999888 6643322 11111 13344455555443 4777775 5566788889999999987 444
Q ss_pred EEEeeC
Q 006683 263 VWIVTN 268 (635)
Q Consensus 263 ~~i~~~ 268 (635)
..++.+
T Consensus 219 ~vvg~d 224 (289)
T 3brs_A 219 KLVCID 224 (289)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 444443
No 81
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=98.37 E-value=2e-05 Score=77.27 Aligned_cols=207 Identities=8% Similarity=0.030 Sum_probs=128.9
Q ss_pred EEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCC-hhhHHH
Q 006683 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET-WEETAV 112 (635)
Q Consensus 35 i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~-s~~~~~ 112 (635)
.+||++.|.. ..+......+++.+.++. |+++ .+.++..++....+....++ ..++.+||.... ......
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~--~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~~~~ 74 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQL-----GYEA--TIFDSQNDTAKESAHFDAII-AAGYDAIIFNPTDADGSIA 74 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHT-----TCEE--EEEECTTCHHHHHHHHHHHH-HTTCSEEEECCSCTTTTHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHc-----CCEE--EEeCCCCCHHHHHHHHHHHH-HcCCCEEEEecCChHHHHH
Confidence 5799999964 444556677777776653 3444 45677778877777777777 678887776433 222223
Q ss_pred HHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHC------CCeE--EEEEEEcCC--CCCC
Q 006683 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY------NWRR--VAAIYEDNV--YGGD 182 (635)
Q Consensus 113 v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~------~w~~--vaii~~~~~--~g~~ 182 (635)
....+...++|+|..... .+. ....+ +.+..++...+..++++|... |.++ ++++..... ..
T Consensus 75 ~~~~~~~~~iPvV~~~~~--~~~--~~~~~--~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~-- 146 (290)
T 2fn9_A 75 NVKRAKEAGIPVFCVDRG--INA--RGLAV--AQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPT-- 146 (290)
T ss_dssp HHHHHHHTTCCEEEESSC--CSC--SSSSS--EEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHH--
T ss_pred HHHHHHHCCCeEEEEecC--CCC--CCceE--EEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchH--
Confidence 344556689999987654 221 11112 226678888888888988666 7888 666664332 22
Q ss_pred cchHHHHHHHHhcc-CCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCCCC
Q 006683 183 SGKLALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (635)
Q Consensus 183 ~~~~~~~~~~l~~~-g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~~ 259 (635)
....+.+++.+++. | +++.... ..... ..+....++++.+. ++++|++ .+...+..+++++++.|+
T Consensus 147 ~~R~~gf~~~l~~~~g-~~~~~~~-~~~~~-----~~~~~~~~~~ll~~~~~~~ai~~--~~d~~a~g~~~al~~~g~-- 215 (290)
T 2fn9_A 147 WDRSNGFHSVVDQYPE-FKMVAQQ-SAEFD-----RDTAYKVTEQILQAHPEIKAIWC--GNDAMALGAMKACEAAGR-- 215 (290)
T ss_dssp HHHHHHHHHHHTTSTT-EEEEEEE-ECTTC-----HHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHhCCC-CEEEEec-cCCCC-----HHHHHHHHHHHHHhCCCCcEEEE--CCchHHHHHHHHHHHCCC--
Confidence 34567788899988 8 7765422 11111 12333445554432 5788876 556677889999999998
Q ss_pred CCeEEEeeC
Q 006683 260 KDSVWIVTN 268 (635)
Q Consensus 260 ~~~~~i~~~ 268 (635)
.+...++.+
T Consensus 216 ~dv~vig~d 224 (290)
T 2fn9_A 216 TDIYIFGFD 224 (290)
T ss_dssp TTCEEECCB
T ss_pred CCeEEEEeC
Confidence 334444443
No 82
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=98.36 E-value=2.5e-05 Score=76.41 Aligned_cols=212 Identities=12% Similarity=0.095 Sum_probs=131.4
Q ss_pred CCeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhH
Q 006683 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (635)
Q Consensus 32 ~~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (635)
+...+||++.|.. ..+......+++.+.++.+ +++. +.++..++....+....++ ..++.+||........
T Consensus 5 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g-----~~~~--~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~~~~~ 76 (289)
T 1dbq_A 5 NHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKG-----YTLI--LGNAWNNLEKQRAYLSMMA-QKRVDGLLVMCSEYPE 76 (289)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHHT-----CEEE--EEECTTCHHHHHHHHHHHH-HTTCSEEEEECSCCCH
T ss_pred CCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcC-----CeEE--EEcCCCChHHHHHHHHHHH-hCCCCEEEEEeccCCH
Confidence 3567899999864 4445567777777777643 4444 4566677777667777777 6788877753222111
Q ss_pred HHHHHhhc-cCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCC--CCCCcchHH
Q 006683 111 AVVAEIAS-RVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLA 187 (635)
Q Consensus 111 ~~v~~~~~-~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~--~g~~~~~~~ 187 (635)
.+.+.+. ..++|+|..... .+. . ++...+.+++...+..++++|...|.++|++|..+.. .. ....+
T Consensus 77 -~~~~~l~~~~~iPvV~~~~~--~~~---~--~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~--~~R~~ 146 (289)
T 1dbq_A 77 -PLLAMLEEYRHIPMVVMDWG--EAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTG--AGRLA 146 (289)
T ss_dssp -HHHHHHHHTTTSCEEEEECS--SCC---S--SSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC--------CHHHH
T ss_pred -HHHHHHHhccCCCEEEEccC--CCc---c--CcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEecCCccccH--HHHHH
Confidence 2233333 379999987644 221 1 2233567788888888999998889999999986532 34 56678
Q ss_pred HHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhh--cCceEEEEecCChhHHHHHHHHHHHcCCCC-CCeEE
Q 006683 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSVW 264 (635)
Q Consensus 188 ~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~--~~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~~ 264 (635)
.+++.+++.| +.+.....+.... ...+....++++.+ .++++|++ .+...+..+++++++.|+.- .+...
T Consensus 147 g~~~~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~G~~vP~di~v 219 (289)
T 1dbq_A 147 GFMKAMEEAM-IKVPESWIVQGDF----EPESGYRAMQQILSQPHRPTAVFC--GGDIMAMGALCAADEMGLRVPQDVSL 219 (289)
T ss_dssp HHHHHHHHTT-CCCCGGGBCCCCS----SHHHHHHHHHHHHTSSSCCSEEEE--SCHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHHHCC-CCCChHHeEeCCC----CHHHHHHHHHHHHhCCCCCCEEEE--CCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 8999999988 6643221111111 11333445555544 36888876 55667788999999999853 33444
Q ss_pred EeeC
Q 006683 265 IVTN 268 (635)
Q Consensus 265 i~~~ 268 (635)
++.+
T Consensus 220 vg~d 223 (289)
T 1dbq_A 220 IGYD 223 (289)
T ss_dssp EEEE
T ss_pred EeeC
Confidence 4443
No 83
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=98.35 E-value=1.8e-05 Score=76.74 Aligned_cols=210 Identities=10% Similarity=0.062 Sum_probs=133.9
Q ss_pred EEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHHHH
Q 006683 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (635)
Q Consensus 35 i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v 113 (635)
-+||+++|.. ..+...+..+++.+.++. |+++ .+.++..++....+....++ ..++.+||-..........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~--~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~~~~~~ 74 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARAR-----GYQL--LIASSDDQPDSERQLQQLFR-ARRCDALFVASCLPPEDDS 74 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHT-----TCEE--EEEECTTCHHHHHHHHHHHH-HTTCSEEEECCCCCSSCCH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHC-----CCEE--EEEeCCCCHHHHHHHHHHHH-HcCCCEEEEecCccccHHH
Confidence 4799999975 334456666666666653 3444 44566667776666677776 6788776653332112334
Q ss_pred HHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHH
Q 006683 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEAL 193 (635)
Q Consensus 114 ~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l 193 (635)
...+...++|+|..... .+ ... +..+..+....+..++++|...|.++++++.............+.+++.+
T Consensus 75 ~~~~~~~~iPvV~~~~~--~~---~~~---~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l 146 (272)
T 3o74_A 75 YRELQDKGLPVIAIDRR--LD---PAH---FCSVISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEAL 146 (272)
T ss_dssp HHHHHHTTCCEEEESSC--CC---TTT---CEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCEEEEccC--CC---ccc---cCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHH
Confidence 45566789999987644 22 212 23466788888888999998889999999987654210045567889999
Q ss_pred hccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc---CceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEeeCc
Q 006683 194 QNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK---QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (635)
Q Consensus 194 ~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~---~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~ 269 (635)
++.| +++.....-... ..+....++++.+. .+++|++ .+...+..+++++++.|+.+.+...++.+.
T Consensus 147 ~~~~-~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~ai~~--~~d~~a~g~~~al~~~g~vp~di~vvg~d~ 216 (272)
T 3o74_A 147 QGYT-GEVRRYQGEAFS------RECGQRLMQQLIDDLGGLPDALVT--TSYVLLQGVFDTLQARPVDSRQLQLGTFGD 216 (272)
T ss_dssp TTCC-SEEEEEEESSSS------HHHHHHHHHHHHHHHTSCCSEEEE--SSHHHHHHHHHHHHTSCGGGCCCEEEEESC
T ss_pred HHcC-CChheeecCCCC------HHHHHHHHHHHHhcCCCCCcEEEE--eCchHHHHHHHHHHHcCCCccceEEEEeCC
Confidence 9999 876543321111 13333444444332 4788876 566778889999999997444455555544
No 84
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=98.34 E-value=7.2e-06 Score=80.39 Aligned_cols=213 Identities=9% Similarity=0.087 Sum_probs=129.8
Q ss_pred CCeEEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHH
Q 006683 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (635)
Q Consensus 32 ~~~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (635)
+...+||+++|.+..+......+++.+.++. |+++ .+.++..++....+....++ ..++.+||.........
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~gi~~~~~~~-----g~~~--~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~~ 77 (288)
T 2qu7_A 6 GRSNIIAFIVPDQNPFFTEVLTEISHECQKH-----HLHV--AVASSEENEDKQQDLIETFV-SQNVSAIILVPVKSKFQ 77 (288)
T ss_dssp -CEEEEEEEESSCCHHHHHHHHHHHHHHGGG-----TCEE--EEEECTTCHHHHHHHHHHHH-HTTEEEEEECCSSSCCC
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHHHHHHC-----CCEE--EEEeCCCCHHHHHHHHHHHH-HcCccEEEEecCCCChH
Confidence 4568999999983333445555655555542 3444 44566677777667777777 78899888654332212
Q ss_pred HHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCC--CCCCcchHHHH
Q 006683 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLALL 189 (635)
Q Consensus 112 ~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~--~g~~~~~~~~~ 189 (635)
.+.. + .++|+|..... .+. +.+..+..++...+..++++|...|.++|++|..... .. ....+.+
T Consensus 78 ~~~~-l--~~iPvV~~~~~--~~~------~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~--~~R~~gf 144 (288)
T 2qu7_A 78 MKRE-W--LKIPIMTLDRE--LES------TSLPSITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTT--IGRKNGY 144 (288)
T ss_dssp CCGG-G--GGSCEEEESCC--CSS------CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHH--HHHHHHH
T ss_pred HHHH-h--cCCCEEEEecc--cCC------CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCH--HHHHHHH
Confidence 2222 2 78999987654 221 1234567788888888999998889999999986533 23 4456778
Q ss_pred HHHHhccCCeEEEEEeee--CCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCC-CCeEEEe
Q 006683 190 AEALQNVSSSEIQSRLVL--PPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSVWIV 266 (635)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~--~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~~i~ 266 (635)
++.+++.| +.+.....+ .......+...+-...++++.+.++++|++ .+...+..+++++++.|+.- .+...++
T Consensus 145 ~~~l~~~g-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~vvg 221 (288)
T 2qu7_A 145 NKAISEFD-LNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSKGIKGIVA--TNHLLLLGALQAIKESEKEIKKDVIIVG 221 (288)
T ss_dssp HHHHHHTT-CCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHTTCCEEEE--CSHHHHHHHHHHHHHSSCCBTTTBEEEE
T ss_pred HHHHHHcC-CCCCcceEEeccCCccccCCHHHHHHHHHHHHhcCCCEEEE--CCcHHHHHHHHHHHHhCCCCCCceEEEE
Confidence 88898888 765321111 111000001122233444444337888886 45667788899999999853 3344444
Q ss_pred eC
Q 006683 267 TN 268 (635)
Q Consensus 267 ~~ 268 (635)
.+
T Consensus 222 ~d 223 (288)
T 2qu7_A 222 FD 223 (288)
T ss_dssp ES
T ss_pred eC
Confidence 44
No 85
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=98.34 E-value=5.7e-05 Score=73.79 Aligned_cols=207 Identities=12% Similarity=0.123 Sum_probs=129.4
Q ss_pred CCeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhH
Q 006683 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (635)
Q Consensus 32 ~~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (635)
+...+||+++|.. ..+...+..+++.+.++. |+++. +.++..++....+....++ ..++.+||........
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~ 77 (285)
T 3c3k_A 6 AKTGMLLVMVSNIANPFCAAVVKGIEKTAEKN-----GYRIL--LCNTESDLARSRSCLTLLS-GKMVDGVITMDALSEL 77 (285)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCEEE--EEECTTCHHHHHHHTHHHH-TTCCSEEEECCCGGGH
T ss_pred CCCCEEEEEeCCCCCchHHHHHHHHHHHHHHc-----CCEEE--EEeCCCCHHHHHHHHHHHH-hCCCCEEEEeCCCCCh
Confidence 3567899999954 444455666666666553 45554 4556667766566666666 7888887764433222
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCC--CCCCcchHHH
Q 006683 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLAL 188 (635)
Q Consensus 111 ~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~--~g~~~~~~~~ 188 (635)
..+ ..+. .++|+|..... .+ +.. +..+..++...+..++++|...|.++|++|..... .. ....+.
T Consensus 78 ~~~-~~l~-~~iPvV~~~~~--~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~--~~R~~g 145 (285)
T 3c3k_A 78 PEL-QNII-GAFPWVQCAEY--DP---LST---VSSVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYA--QHRESG 145 (285)
T ss_dssp HHH-HHHH-TTSSEEEESSC--CT---TSS---SCEEECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHH--HHHHHH
T ss_pred HHH-HHHh-cCCCEEEEccc--cC---CCC---CCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCCCccccH--HHHHHH
Confidence 333 3345 89999988644 22 112 23466787778888899988889999999987643 22 344667
Q ss_pred HHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHh--hhhc--CceEEEEecCChhHHHHHHHHHHHcCCCC-CCeE
Q 006683 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKK--VQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSV 263 (635)
Q Consensus 189 ~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~--l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~ 263 (635)
+++.+++.| +.+. ...-.... .+....+++ +.+. .+++|++ .+...+..+++++++.|+.- .+..
T Consensus 146 f~~~l~~~g-~~~~-~~~~~~~~------~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~vP~di~ 215 (285)
T 3c3k_A 146 YLNRLKFHG-LDYS-RISYAENL------DYMAGKLATFSLLKSAVKPDAIFA--ISDVLAAGAIQALTESGLSIPQDVA 215 (285)
T ss_dssp HHHHHHHHT-CCCC-EEEECSSS------SHHHHHHHHHHHHSSSSCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCE
T ss_pred HHHHHHHcC-CCce-EeecCCCh------HHHHHHHHHHHHHcCCCCCeEEEE--CCHHHHHHHHHHHHHcCCCCCCceE
Confidence 888898888 7654 11111111 223345555 4433 5788876 55667788899999999863 3444
Q ss_pred EEeeC
Q 006683 264 WIVTN 268 (635)
Q Consensus 264 ~i~~~ 268 (635)
.++.+
T Consensus 216 vvg~d 220 (285)
T 3c3k_A 216 VVGFD 220 (285)
T ss_dssp EECSB
T ss_pred EEEeC
Confidence 44443
No 86
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=98.33 E-value=2.9e-05 Score=76.25 Aligned_cols=211 Identities=11% Similarity=0.072 Sum_probs=132.7
Q ss_pred CCeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhH
Q 006683 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (635)
Q Consensus 32 ~~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (635)
+..-+||++.|.. ..+...+..+++.+.++. |+++. +.++..++....+....++ ..++.+||........
T Consensus 18 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~~~~~ 89 (293)
T 2iks_A 18 GRTRSIGLVIPDLENTSYTRIANYLERQARQR-----GYQLL--IACSEDQPDNEMRCIEHLL-QRQVDAIIVSTSLPPE 89 (293)
T ss_dssp CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHT-----TCEEE--EEECTTCHHHHHHHHHHHH-HTTCSEEEECCSSCTT
T ss_pred CCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHC-----CCEEE--EEcCCCCHHHHHHHHHHHH-HcCCCEEEEeCCCCCc
Confidence 3567899999853 334445566666665553 34444 4566667766666677776 6788877754332222
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCC--CCCCcchHHH
Q 006683 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLAL 188 (635)
Q Consensus 111 ~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~--~g~~~~~~~~ 188 (635)
..+...+...++|+|..... .+ +. .+..+..++...+..++++|...|.++|++|..... .. ....+.
T Consensus 90 ~~~~~~~~~~~iPvV~~~~~--~~---~~---~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~--~~R~~G 159 (293)
T 2iks_A 90 HPFYQRWANDPFPIVALDRA--LD---RE---HFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVS--FLREQG 159 (293)
T ss_dssp CHHHHTTTTSSSCEEEEESC--CC---TT---TCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHH--HHHHHH
T ss_pred HHHHHHHHhCCCCEEEECCc--cC---cC---CCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCcccccH--HHHHHH
Confidence 23445566789999988644 22 11 223466788888888899998889999999987643 22 345677
Q ss_pred HHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCCC-CCCeEEE
Q 006683 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLV-GKDSVWI 265 (635)
Q Consensus 189 ~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~-~~~~~~i 265 (635)
+++.+++.| +..... +.... + ..+-...++++.+. .+++|++ .+...+..+++++++.|+. +.+...+
T Consensus 160 f~~~l~~~g-~~~~~~--~~~~~---~-~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~vv 230 (293)
T 2iks_A 160 FRTAWKDDP-REVHFL--YANSY---E-REAAAQLFEKWLETHPMPQALFT--TSFALLQGVMDVTLRRDGKLPSDLAIA 230 (293)
T ss_dssp HHHHHTTCC-CCEEEE--EESSS---C-HHHHHHHHHHHTTTSCCCSEEEE--SSHHHHHHHHHHHHHHHSSCCSSCEEE
T ss_pred HHHHHHHcC-CCccEE--EcCCC---C-hhhHHHHHHHHHhcCCCCCEEEE--CChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 888999998 743322 11111 1 13334455555443 5788876 5566788889999999985 3345555
Q ss_pred eeCc
Q 006683 266 VTNT 269 (635)
Q Consensus 266 ~~~~ 269 (635)
+.+.
T Consensus 231 g~d~ 234 (293)
T 2iks_A 231 TFGD 234 (293)
T ss_dssp EESC
T ss_pred EECC
Confidence 5544
No 87
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=98.29 E-value=2.1e-05 Score=77.66 Aligned_cols=189 Identities=13% Similarity=0.199 Sum_probs=121.4
Q ss_pred CCeEEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHH
Q 006683 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (635)
Q Consensus 32 ~~~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (635)
.++.+||++...+..+..+...|++.++++.+-. .|.++.+.+.|+..++....+.+.++. ++++++||.... ....
T Consensus 6 ~~t~~IGvi~~~~~p~~~~~~~gi~~~l~~~Gy~-~g~~v~l~~~~~~~~~~~~~~~~~~l~-~~~vDgII~~~~-~~~~ 82 (302)
T 2qh8_A 6 AKTAKVAVSQIVEHPALDATRQGLLDGLKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFV-GENPDVLVGIAT-PTAQ 82 (302)
T ss_dssp -CCEEEEEEESSCCHHHHHHHHHHHHHHHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHH-HTCCSEEEEESH-HHHH
T ss_pred cCCcEEEEEEeccChhHHHHHHHHHHHHHHcCCC-CCCceEEEEecCCCCHHHHHHHHHHHH-hCCCCEEEECCh-HHHH
Confidence 3578999985445554556666666555543221 145788889999999988888888887 788888886443 2233
Q ss_pred HHHHhhccCCccEEeecCCCCCCCCC------CCCCceEEEEecCcHHHHHHHHHHHHHC--CCeEEEEEEEcCC-CCCC
Q 006683 112 VVAEIASRVQVPILSFAAPAVTPLSM------SRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNV-YGGD 182 (635)
Q Consensus 112 ~v~~~~~~~~ip~Is~~~~~~~~~l~------~~~~p~~~r~~p~~~~~~~al~~~l~~~--~w~~vaii~~~~~-~g~~ 182 (635)
.+.. ...++|+|..+.. ++... ....+++.... +...+...+++|... |.+++++|+.... .+
T Consensus 83 ~~~~--~~~~iPvV~~~~~--~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~-- 154 (302)
T 2qh8_A 83 ALVS--ATKTIPIVFTAVT--DPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANA-- 154 (302)
T ss_dssp HHHH--HCSSSCEEEEEES--CTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHH--
T ss_pred HHHh--cCCCcCEEEEecC--CHhhcCccccccCCCCCEEEEE--CCcCHHHHHHHHHHhCCCCcEEEEEecCCCcch--
Confidence 3333 2679999987654 33211 01113343333 222355667888776 9999999997653 24
Q ss_pred cchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCCh
Q 006683 183 SGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL 242 (635)
Q Consensus 183 ~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~ 242 (635)
....+.+++.+++.| +++...... .. .+....++++.. ++++|++ ..+.
T Consensus 155 ~~r~~g~~~al~~~g-i~~~~~~~~--~~------~~~~~~~~~l~~-~~dai~~-~~D~ 203 (302)
T 2qh8_A 155 VSLMELLKLSAAKHG-IKLVEATAL--KS------ADVQSATQAIAE-KSDVIYA-LIDN 203 (302)
T ss_dssp HHHHHHHHHHHHHTT-CEEEEEECS--SG------GGHHHHHHHHGG-GCSEEEE-CSCH
T ss_pred HHHHHHHHHHHHHcC-CEEEEEecC--Ch------HHHHHHHHHHhc-cCCEEEE-CCcH
Confidence 556778999999999 887654321 11 456677777764 7899988 6554
No 88
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=98.28 E-value=0.00013 Score=73.68 Aligned_cols=219 Identities=15% Similarity=0.150 Sum_probs=139.4
Q ss_pred eEEEEEEeeCCC--cCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhc-CCeEEEEcCCChhhH
Q 006683 34 VTKIGAIVDANS--QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEET 110 (635)
Q Consensus 34 ~i~IG~i~p~s~--~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~ 110 (635)
..+||++.|... .+...+..+++.+.++.+ ++ +.+.++..++....+.+.+++.. +++.+||-.......
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g-----~~--~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~ 75 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLG-----LD--LRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVA 75 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHT-----CE--EEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcC-----Ce--EEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhH
Confidence 468999999763 455677778887777753 34 44457777888878888889854 688876653333445
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCCCC-------CCCc-eEEEEecCcHHHHHHHHHHHHHCC------C-eEEEEEEE
Q 006683 111 AVVAEIASRVQVPILSFAAPAVTPLSMS-------RRWP-YLIRMASNDSEQMKCIADLARKYN------W-RRVAAIYE 175 (635)
Q Consensus 111 ~~v~~~~~~~~ip~Is~~~~~~~~~l~~-------~~~p-~~~r~~p~~~~~~~al~~~l~~~~------w-~~vaii~~ 175 (635)
..+...+...+||+|..... .+.... ..|+ ++..+.++....+..++++|...+ - ++++++..
T Consensus 76 ~~~~~~~~~~giPvV~~~~~--~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g 153 (350)
T 3h75_A 76 PQILRLSQGSGIKLFIVNSP--LTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSG 153 (350)
T ss_dssp HHHHHHHTTSCCEEEEEESC--CCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEES
T ss_pred HHHHHHHHhCCCcEEEEcCC--CChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeC
Confidence 56667788899999998765 333221 1111 256777888888888999886655 4 79999976
Q ss_pred cCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHH
Q 006683 176 DNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEAN 253 (635)
Q Consensus 176 ~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~ 253 (635)
...........+.+++.+++.| . +.....+.... + .......++++.+. ++++|++ .+...+..++++++
T Consensus 154 ~~~~~~~~~R~~Gf~~~l~~~~-~-~~~~~~~~~~~---~-~~~~~~~~~~~L~~~~~~~aI~~--~~d~~a~g~~~al~ 225 (350)
T 3h75_A 154 LKVTPAAQLRERGLRRALAEHP-Q-VHLRQLVYGEW---N-RERAYRQAQQLLKRYPKTQLVWS--ANDEMALGAMQAAR 225 (350)
T ss_dssp CTTSHHHHHHHHHHHHHHHHCT-T-EEEEEEEECTT---C-HHHHHHHHHHHHHHCTTEEEEEE--SSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHCC-C-eEEEEEeeCCC---c-HHHHHHHHHHHHHhCCCcCEEEE--CChHHHHHHHHHHH
Confidence 5332100344677888999888 5 22222222221 1 13334445555433 4566654 67778888999999
Q ss_pred HcCCCC-CCeEEEeeCc
Q 006683 254 RMGLVG-KDSVWIVTNT 269 (635)
Q Consensus 254 ~~g~~~-~~~~~i~~~~ 269 (635)
+.|+.- .+...++.+.
T Consensus 226 ~~G~~vP~di~vvg~d~ 242 (350)
T 3h75_A 226 ELGRKPGTDLLFSGVNS 242 (350)
T ss_dssp HTTCCBTTTBEEEEESC
T ss_pred HcCCCCCCCeEEEecCC
Confidence 999863 3355555544
No 89
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=98.28 E-value=7.5e-05 Score=73.36 Aligned_cols=209 Identities=10% Similarity=0.152 Sum_probs=132.2
Q ss_pred eEEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHHHH
Q 006683 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (635)
Q Consensus 34 ~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v 113 (635)
..+||++-..+.++..+...|++.++++.+- .|.++.+.+.|+..++....+.+.++. ++++++||.... .....+
T Consensus 2 ~~~Igvi~~~~~p~~~~i~~gi~~~l~~~gy--~g~~v~l~~~~~~~~~~~~~~~~~~l~-~~~vDgII~~~~-~~~~~~ 77 (295)
T 3lft_A 2 NAKIGVLQFVSHPSLDLIYKGIQDGLAEEGY--KDDQVKIDFMNSEGDQSKVATMSKQLV-ANGNDLVVGIAT-PAAQGL 77 (295)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHHHHHHTTC--CGGGEEEEEEECTTCHHHHHHHHHHHT-TSSCSEEEEESH-HHHHHH
T ss_pred ceEEEEEEccCChhHHHHHHHHHHHHHHcCC--CCCceEEEEecCCCCHHHHHHHHHHHH-hcCCCEEEECCc-HHHHHH
Confidence 3689988334444455666777666665443 244788888999999988777777777 788888886433 223333
Q ss_pred HHhhccCCccEEeecCCCCCCCCC---C---CCCceEEEEecCcHHHHHHHHHHHHHC--CCeEEEEEEEcCCC-CCCcc
Q 006683 114 AEIASRVQVPILSFAAPAVTPLSM---S---RRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNVY-GGDSG 184 (635)
Q Consensus 114 ~~~~~~~~ip~Is~~~~~~~~~l~---~---~~~p~~~r~~p~~~~~~~al~~~l~~~--~w~~vaii~~~~~~-g~~~~ 184 (635)
... ..++|+|..+.. ++... . ....++..+. +...+...+++|... |.+++++|+..... + ..
T Consensus 78 ~~~--~~~iPvV~~~~~--~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~--~~ 149 (295)
T 3lft_A 78 ASA--TKDLPVIMAAIT--DPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPNVKTIGALYSSSEDNS--KT 149 (295)
T ss_dssp HHH--CSSSCEEEESCS--CTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHH--HH
T ss_pred HHc--CCCCCEEEEecc--ChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCCCcEEEEEeCCCCcch--HH
Confidence 322 479999987654 33221 1 1112333333 233356677888776 89999999987542 3 45
Q ss_pred hHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEE
Q 006683 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVW 264 (635)
Q Consensus 185 ~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~ 264 (635)
..+.+++.+++.| +++....... . .+....++++.. ++++|++ ..+. .+...++++.+.+.. .+...
T Consensus 150 r~~g~~~al~~~g-i~~~~~~~~~--~------~~~~~~~~~l~~-~~dai~~-~~D~-~a~g~~~~l~~~~~~-~~i~v 216 (295)
T 3lft_A 150 QVEEFKAYAEKAG-LTVETFAVPS--T------NEIASTVTVMTS-KVDAIWV-PIDN-TIASGFPTVVSSNQS-SKKPI 216 (295)
T ss_dssp HHHHHHHHHHHTT-CEEEEEEESS--G------GGHHHHHHHHTT-TCSEEEE-CSCH-HHHHTHHHHHHHTTT-TCCCE
T ss_pred HHHHHHHHHHHcC-CEEEEEecCC--H------HHHHHHHHHHHh-cCCEEEE-CCch-hHHHHHHHHHHHHHH-cCCCE
Confidence 5678999999999 8876543221 1 356677777764 7899988 6554 445556777777653 33444
Q ss_pred Eee
Q 006683 265 IVT 267 (635)
Q Consensus 265 i~~ 267 (635)
++.
T Consensus 217 ig~ 219 (295)
T 3lft_A 217 YPS 219 (295)
T ss_dssp EES
T ss_pred EeC
Confidence 443
No 90
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=98.26 E-value=5.6e-05 Score=75.09 Aligned_cols=207 Identities=9% Similarity=0.001 Sum_probs=129.6
Q ss_pred EEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEe-cCCCCHHHHHHHHHHHhhcCCeEEEE-cCCChhhHHH
Q 006683 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIR-DHNRDPFQAATAAQELINKEKVKVIA-GMETWEETAV 112 (635)
Q Consensus 36 ~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~-D~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~~~ 112 (635)
+||+++|.. ..+......+++.+.++.+ +++.+. ++..++....+.+..++ .+++.+|| .|..+.....
T Consensus 5 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g-------~~~~~~~~~~~d~~~q~~~i~~li-~~~vdgiii~~~~~~~~~~ 76 (316)
T 1tjy_A 5 RIAFIPKLVGVGFFTSGGNGAQEAGKALG-------IDVTYDGPTEPSVSGQVQLVNNFV-NQGYDAIIVSAVSPDGLCP 76 (316)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHHHT-------CEEEECCCSSCCHHHHHHHHHHHH-HTTCSEEEECCSSSSTTHH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHhC-------CEEEEECCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCCHHHHHH
Confidence 799999865 3445566777777777654 444555 46778888788888888 67888755 4554443344
Q ss_pred HHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHH---CCCeEEEEEEEcCC--CCCCcchHH
Q 006683 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK---YNWRRVAAIYEDNV--YGGDSGKLA 187 (635)
Q Consensus 113 v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~---~~w~~vaii~~~~~--~g~~~~~~~ 187 (635)
+...+...+||+|.+... .+. .. ...+-...+....+...+++|.. .|-+++++|..... .. ....+
T Consensus 77 ~~~~a~~~gipvV~~d~~--~~~--~~--~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~--~~r~~ 148 (316)
T 1tjy_A 77 ALKRAMQRGVKILTWDSD--TKP--EC--RSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQ--NQWVK 148 (316)
T ss_dssp HHHHHHHTTCEEEEESSC--CCG--GG--CSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHH--HHHHH
T ss_pred HHHHHHHCcCEEEEecCC--CCC--CC--ceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhH--HHHHH
Confidence 556677789999988644 211 11 12222256777778888888755 57899999985432 22 34456
Q ss_pred HHHHHHhcc--CCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCCCCCCeE
Q 006683 188 LLAEALQNV--SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSV 263 (635)
Q Consensus 188 ~~~~~l~~~--g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~ 263 (635)
.+++.+++. + +++..... .... .......++++.+. ++++|+. .+...+..+++++++.| . ....
T Consensus 149 g~~~~l~~~~~~-~~~~~~~~-~~~~-----~~~~~~~~~~ll~~~~~~~aI~~--~nD~~A~g~~~al~~~G-~-~dv~ 217 (316)
T 1tjy_A 149 EAKAKISQEHPG-WEIVTTQF-GYND-----ATKSLQTAEGIIKAYPDLDAIIA--PDANALPAAAQAAENLK-R-NNLA 217 (316)
T ss_dssp HHHHHHHHHCTT-EEEEEEEE-CTTC-----HHHHHHHHHHHHHHCSSCCEEEE--CSTTHHHHHHHHHHHTT-C-CSCE
T ss_pred HHHHHHHhhCCC-cEEEEecc-CCCC-----HHHHHHHHHHHHHhCCCCCEEEE--CCCccHHHHHHHHHHcC-C-CCEE
Confidence 677778665 5 66654322 1111 13344555555443 5677776 45566788899999999 6 4445
Q ss_pred EEeeCc
Q 006683 264 WIVTNT 269 (635)
Q Consensus 264 ~i~~~~ 269 (635)
.++.+.
T Consensus 218 VvG~D~ 223 (316)
T 1tjy_A 218 IVGFST 223 (316)
T ss_dssp EEEBCC
T ss_pred EEEeCC
Confidence 555443
No 91
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=98.24 E-value=6e-05 Score=74.45 Aligned_cols=213 Identities=15% Similarity=0.091 Sum_probs=129.9
Q ss_pred eEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChh-hHH
Q 006683 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE-ETA 111 (635)
Q Consensus 34 ~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~-~~~ 111 (635)
+++||++.|.. ..+......+++.+.++.+ +.+ .+.++..++....+.+..++ ..++.+||...... ...
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g-----~~l--~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~~~~ 73 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKRG-----ITL--KIADGQQKQENQIKAVRSFV-AQGVDAIFIAPVVATGWE 73 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHHT-----CEE--EEEECTTCHHHHHHHHHHHH-HHTCSEEEECCSSSSSCH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHcC-----CEE--EEeCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCChhhHH
Confidence 47999999975 3444556667776666543 444 44566677777666777777 57788776543322 112
Q ss_pred HHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCC---CeEEEEEEEcCC--CCCCcchH
Q 006683 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYN---WRRVAAIYEDNV--YGGDSGKL 186 (635)
Q Consensus 112 ~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~---w~~vaii~~~~~--~g~~~~~~ 186 (635)
.....+...++|+|..... .+.. ...+++..+..+....+..++++|...| -++|++|..... .. ....
T Consensus 74 ~~~~~~~~~~iPvV~~~~~--~~~~--~~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~--~~R~ 147 (306)
T 2vk2_A 74 PVLKEAKDAEIPVFLLDRS--IDVK--DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVA--IDRK 147 (306)
T ss_dssp HHHHHHHHTTCCEEEESSC--CCCS--CGGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHH--HHHH
T ss_pred HHHHHHHHCCCCEEEecCC--CCCC--CccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhH--HHHH
Confidence 3344455679999987644 2211 1111344567788788888888887665 789999986533 22 3446
Q ss_pred HHHHHHHhccCCe-EEEEEeeeCCCCCCCCchHHHHHHHHhhhh-----cCceEEEEecCChhHHHHHHHHHHHcCCCC-
Q 006683 187 ALLAEALQNVSSS-EIQSRLVLPPISSISDPKEAVRGELKKVQD-----KQSRVFIVLQASLDMTIHLFTEANRMGLVG- 259 (635)
Q Consensus 187 ~~~~~~l~~~g~~-~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~-----~~~~vii~~~~~~~~~~~~l~~a~~~g~~~- 259 (635)
+.+++.+++.| . ++... ..... + ..+....++++.+ ..+++|++ .+...+..+++++++.|+.-
T Consensus 148 ~Gf~~al~~~g-~~~~~~~--~~~~~---~-~~~~~~~~~~ll~~~~~~~~~~ai~~--~nd~~A~g~~~al~~~G~~vP 218 (306)
T 2vk2_A 148 KGFAEAIKNAP-NIKIIRS--QSGDF---T-RSKGKEVMESFIKAENNGKNICMVYA--HNDDMVIGAIQAIKEAGLKPG 218 (306)
T ss_dssp HHHHHHTTTCT-TEEEEEE--EECTT---C-HHHHHHHHHHHHHHTTTTTTCCEEEE--SSHHHHHHHHHHHHHTTCCBT
T ss_pred HHHHHHHhhCC-CeEEEEe--ccCCC---c-HHHHHHHHHHHHHhCCCCCCeeEEEE--CCchHHHHHHHHHHHcCCCCC
Confidence 67888888888 5 32221 11111 1 1223344444433 35788876 55667888999999999853
Q ss_pred CCeEEEeeCc
Q 006683 260 KDSVWIVTNT 269 (635)
Q Consensus 260 ~~~~~i~~~~ 269 (635)
.+...++.+.
T Consensus 219 ~di~vig~D~ 228 (306)
T 2vk2_A 219 KDILTGSIDG 228 (306)
T ss_dssp TTBEEEEEEC
T ss_pred CCeEEEeecC
Confidence 3455555443
No 92
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=98.22 E-value=4.7e-05 Score=74.58 Aligned_cols=213 Identities=14% Similarity=0.096 Sum_probs=132.2
Q ss_pred CCCeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhh
Q 006683 31 IEEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (635)
Q Consensus 31 ~~~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (635)
++..-+||+++|.. ..+...+..+++.+.++. |+.+. +.++..++....+....++ ..++.+||-......
T Consensus 13 ~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~~ 84 (289)
T 2fep_A 13 SKKTTTVGVIIPDISSIFYSELARGIEDIATMY-----KYNII--LSNSDQNMEKELHLLNTML-GKQVDGIVFMGGNIT 84 (289)
T ss_dssp ---CCEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCEEE--EEECTTCHHHHHHHHHHHH-HTTCSEEEECCSCCC
T ss_pred cCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHc-----CCEEE--EEeCCCCHHHHHHHHHHHH-hCCCCEEEEecCCCC
Confidence 35678999999964 344455666666666553 35554 4566677766666677776 678887775332222
Q ss_pred HHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcC-C--CCCCcchH
Q 006683 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN-V--YGGDSGKL 186 (635)
Q Consensus 110 ~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~-~--~g~~~~~~ 186 (635)
.. ....+...++|+|..... .+ ... +..+..++...+..++++|...|.+++++|.... . .. ....
T Consensus 85 ~~-~~~~l~~~~iPvV~~~~~--~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~--~~R~ 153 (289)
T 2fep_A 85 DE-HVAEFKRSPVPIVLAASV--EE---QEE---TPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINR--SKKL 153 (289)
T ss_dssp HH-HHHHHHHSSSCEEEESCC--CT---TCC---SCEEECCHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHH--TTHH
T ss_pred HH-HHHHHHhcCCCEEEEccc--cC---CCC---CCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCccccccH--HHHH
Confidence 22 233345679999988644 22 112 2346678888888899999888999999998764 2 23 4557
Q ss_pred HHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCCCC-CCeE
Q 006683 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSV 263 (635)
Q Consensus 187 ~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~ 263 (635)
+.+++.+++.| +.+.....+.... + ..+-...++++.+. .+++|++ .+...+..+++++++.|+.- .+..
T Consensus 154 ~Gf~~al~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~G~~vP~di~ 226 (289)
T 2fep_A 154 QGYKRALEEAN-LPFNEQFVAEGDY---T-YDSGLEALQHLMSLDKKPTAILS--ATDEMALGIIHAAQDQGLSIPEDLD 226 (289)
T ss_dssp HHHHHHHHHTT-CCCCGGGEEECCS---C-HHHHHHHHHHHTTSSSCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCE
T ss_pred HHHHHHHHHcC-CCCChheEeeCCC---C-HHHHHHHHHHHHcCCCCCCEEEE--CCHHHHHHHHHHHHHcCCCCCCCeE
Confidence 78999999988 7653211111111 1 13334455555443 6788876 56667888999999999853 3444
Q ss_pred EEeeCc
Q 006683 264 WIVTNT 269 (635)
Q Consensus 264 ~i~~~~ 269 (635)
.++.+.
T Consensus 227 vvg~D~ 232 (289)
T 2fep_A 227 IIGFDN 232 (289)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 454443
No 93
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=98.22 E-value=0.0001 Score=72.13 Aligned_cols=212 Identities=10% Similarity=0.097 Sum_probs=134.5
Q ss_pred CCeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEc-CCChhh
Q 006683 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEE 109 (635)
Q Consensus 32 ~~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~ 109 (635)
+..-+||+++|.. ..+...+..+++.+.++. |+ ++.+.++..++....+....++ ..++.+||- +.....
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~--~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~ 77 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKAN-----KY--EALVATSQNSRISEREQILEFV-HLKVDAIFITTLDDVY 77 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHT-----TC--EEEEEECSSCHHHHHHHHHHHH-HTTCSEEEEECSCTTT
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHc-----CC--EEEEECCCCCHHHHHHHHHHHH-HcCCCEEEEecCChHH
Confidence 4568999999964 334456666666666654 33 4455677778877777777887 677776664 333333
Q ss_pred HHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHH-C-CCe-----EEEEEEEcCCCCCC
Q 006683 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-Y-NWR-----RVAAIYEDNVYGGD 182 (635)
Q Consensus 110 ~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~-~-~w~-----~vaii~~~~~~g~~ 182 (635)
.......+...++|+|..... .+. . +.+..+..+....+..++++|.. + |-+ ++++|.........
T Consensus 78 ~~~~~~~~~~~~iPvV~~~~~--~~~--~---~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~ 150 (293)
T 3l6u_A 78 IGSAIEEAKKAGIPVFAIDRM--IRS--D---AVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTT 150 (293)
T ss_dssp THHHHHHHHHTTCCEEEESSC--CCC--T---TCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHH
T ss_pred HHHHHHHHHHcCCCEEEecCC--CCC--C---cceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchH
Confidence 334455666789999988755 221 1 22345678888888888888866 5 666 99999865432100
Q ss_pred cchHHHHHHHHhcc-CCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCCCC
Q 006683 183 SGKLALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (635)
Q Consensus 183 ~~~~~~~~~~l~~~-g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~~ 259 (635)
....+.+++.+++. | +++..... .... ..+....++++.+. ++++|++ .+...+..+++++++.|+.
T Consensus 151 ~~R~~gf~~~l~~~~g-~~~~~~~~-~~~~-----~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~- 220 (293)
T 3l6u_A 151 NERHRGFLKGIENEPT-LSIVDSVS-GNYD-----PVTSERVMRQVIDSGIPFDAVYC--HNDDIAMGVLEALKKAKIS- 220 (293)
T ss_dssp HHHHHHHHHHHTTCTT-EEEEEEEE-CTTC-----HHHHHHHHHHHHHTTCCCSEEEE--SSHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHhCCC-cEEeeecc-CCCC-----HHHHHHHHHHHHHhCCCCCEEEE--CCchHHHHHHHHHHhCCCC-
Confidence 34567889999998 8 88765432 1111 13344455555443 5778775 6667788899999999986
Q ss_pred CCeEEEeeCc
Q 006683 260 KDSVWIVTNT 269 (635)
Q Consensus 260 ~~~~~i~~~~ 269 (635)
+...++.+.
T Consensus 221 -di~vig~d~ 229 (293)
T 3l6u_A 221 -GKIVVGIDG 229 (293)
T ss_dssp -CCEEEEEEC
T ss_pred -CeEEEEecC
Confidence 344444443
No 94
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=98.21 E-value=9.7e-05 Score=72.96 Aligned_cols=204 Identities=13% Similarity=0.111 Sum_probs=128.5
Q ss_pred EEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCC-ChhhHHH
Q 006683 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGME-TWEETAV 112 (635)
Q Consensus 35 i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~-~s~~~~~ 112 (635)
-+||+++|.. ..+......+++.+.++. |+ +++.+.++..++....+....++ ..++.+||... .......
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~-~~~~~~~~~~~~~~~~~~~~~~~-~~~vdgiii~~~~~~~~~~ 75 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAA-----PD-VQLLMNDSQNDQSKQNDQIDVLL-AKGVKALAINLVDPAAAGT 75 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTC-----TT-EEEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCSSGGGHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhc-----CC-eEEEEecCCCCHHHHHHHHHHHH-HcCCCEEEEeCCCcchhHH
Confidence 5799999864 334445556666555543 23 34556677778877677777777 67888777543 3332334
Q ss_pred HHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHH------------CCCeEEEEEEEcCC--
Q 006683 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK------------YNWRRVAAIYEDNV-- 178 (635)
Q Consensus 113 v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~------------~~w~~vaii~~~~~-- 178 (635)
....+...++|+|..... .+...-..++.+..+..++...+..++++|.. .|-++|++|.....
T Consensus 76 ~~~~~~~~~iPvV~~~~~--~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~ 153 (309)
T 2fvy_A 76 VIEKARGQNVPVVFFNKE--PSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 153 (309)
T ss_dssp HHHHHHTTTCCEEEESSC--CCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCH
T ss_pred HHHHHHHCCCcEEEecCC--CCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCc
Confidence 455566789999987644 22110011345667888888888888888866 67789999986533
Q ss_pred CCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc----CceEEEEecCChhHHHHHHHHHHH
Q 006683 179 YGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK----QSRVFIVLQASLDMTIHLFTEANR 254 (635)
Q Consensus 179 ~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~----~~~vii~~~~~~~~~~~~l~~a~~ 254 (635)
.. ....+.+++.+++.| +.+.....+.... + .......++++.+. .+++|++ .+...+..+++++++
T Consensus 154 ~~--~~R~~gf~~~l~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~~~ai~~--~~d~~a~g~~~al~~ 224 (309)
T 2fvy_A 154 DA--EARTTYVIKELNDKG-IKTEQLQLDTAMW---D-TAQAKDKMDAWLSGPNANKIEVVIA--NNDAMAMGAVEALKA 224 (309)
T ss_dssp HH--HHHHHHHHHHHHHTT-CCEEEEEEEECTT---C-HHHHHHHHHHHHTSTTGGGCCEEEE--SSHHHHHHHHHHHHH
T ss_pred cH--HHHHHHHHHHHHhcC-CceEEEEEecCCC---C-HHHHHHHHHHHHHhCCCCCccEEEE--CCchhHHHHHHHHHH
Confidence 22 445677888999988 7654332222211 1 12334455555443 5788776 556677889999999
Q ss_pred cC
Q 006683 255 MG 256 (635)
Q Consensus 255 ~g 256 (635)
.|
T Consensus 225 ~g 226 (309)
T 2fvy_A 225 HN 226 (309)
T ss_dssp TT
T ss_pred cC
Confidence 88
No 95
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=98.21 E-value=2.3e-05 Score=77.17 Aligned_cols=214 Identities=11% Similarity=0.036 Sum_probs=140.2
Q ss_pred eEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCC--CCHHHHHHHHHHHhhcCCeEEEE-cCCChhh
Q 006683 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHN--RDPFQAATAAQELINKEKVKVIA-GMETWEE 109 (635)
Q Consensus 34 ~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~--~~~~~a~~~~~~li~~~~v~aii-G~~~s~~ 109 (635)
.++||++.|.. ..+......+++.+.++.+ +++. +.+.. .++....+.+..++ ..++.+|| .|.....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g-----~~~~--~~~~~~~~~~~~~~~~i~~l~-~~~vdgiii~~~~~~~ 74 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEELK-----VDLQ--ILAPPGANDVPKQVQFIESAL-ATYPSGIATTIPSDTA 74 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHHT-----CEEE--EECCSSSCCHHHHHHHHHHHH-HTCCSEEEECCCCSST
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHhC-----cEEE--EECCCCcCCHHHHHHHHHHHH-HcCCCEEEEeCCCHHH
Confidence 47999999986 4555677788888877753 4444 45544 58887777888888 67788666 4444443
Q ss_pred HHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCC--CeEEEEEEEcCCCCCCcchHH
Q 006683 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYN--WRRVAAIYEDNVYGGDSGKLA 187 (635)
Q Consensus 110 ~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~--w~~vaii~~~~~~g~~~~~~~ 187 (635)
.......+...++|+|..... .+... ..+.+..+.++....+..++++|...+ -++++++.............+
T Consensus 75 ~~~~~~~~~~~giPvV~~~~~--~~~~~--~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~ 150 (297)
T 3rot_A 75 FSKSLQRANKLNIPVIAVDTR--PKDKT--KNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAY 150 (297)
T ss_dssp THHHHHHHHHHTCCEEEESCC--CSCTT--TSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEcCC--Ccccc--ccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHH
Confidence 345556677789999988755 33211 113344577888888999999987777 899999976543210034567
Q ss_pred HHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCCCC-C-CeE
Q 006683 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG-K-DSV 263 (635)
Q Consensus 188 ~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~-~~~ 263 (635)
.+++.+++.| +++.... . .. ........++++.+. ++++|++ .+...+..+++++++.|+.- . +..
T Consensus 151 Gf~~~l~~~g-~~~~~~~--~-~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~vP~~dv~ 220 (297)
T 3rot_A 151 GIKTILQDKG-IFFEELD--V-GT----DPNQVQSRVKSYFKIHPETNIIFC--LTSQALDPLGQMLLHPDRYDFNYQPQ 220 (297)
T ss_dssp HHHHHHHHTT-CEEEEEE--C-CS----CHHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHSHHHHTCCCCCE
T ss_pred HHHHHHHhcC-CeEEEee--c-CC----ChHHHHHHHHHHHHhCCCCCEEEE--cCCcchHHHHHHHHhcCCccCCCceE
Confidence 7899999999 8887543 1 11 123444555554433 5677765 56677788899999888742 1 344
Q ss_pred EEeeCc
Q 006683 264 WIVTNT 269 (635)
Q Consensus 264 ~i~~~~ 269 (635)
.++.+.
T Consensus 221 vig~D~ 226 (297)
T 3rot_A 221 VYSFDK 226 (297)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 444443
No 96
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=98.18 E-value=0.00016 Score=71.53 Aligned_cols=209 Identities=9% Similarity=-0.038 Sum_probs=133.6
Q ss_pred EEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEc-CCChhhHHH
Q 006683 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAV 112 (635)
Q Consensus 35 i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~ 112 (635)
.+||+++|.. ..+...+..+++.+.++. |+ ++.+.++..++....+....++ ..++.+||- +........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~--~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~~~~~ 74 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESL-----GA--KVFVQSANGNEETQMSQIENMI-NRGVDVLVIIPYNGQVLSN 74 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHT-----SC--EEEEEECTTCHHHHHHHHHHHH-HTTCSEEEEECSSTTSCHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHc-----CC--EEEEECCCCCHHHHHHHHHHHH-HcCCCEEEEeCCChhhhHH
Confidence 5899999964 556667788888877774 33 4445666778877777777777 677876664 333333344
Q ss_pred HHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHH-HCCCeEEEEEEEcCCCCCCcchHHHHHH
Q 006683 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR-KYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (635)
Q Consensus 113 v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~-~~~w~~vaii~~~~~~g~~~~~~~~~~~ 191 (635)
....+...++|+|..... .+. ... ...+..+....+..++++|. ..|-+++++|.............+.+++
T Consensus 75 ~~~~~~~~~iPvV~~~~~--~~~---~~~--~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~~ 147 (313)
T 3m9w_A 75 VVKEAKQEGIKVLAYDRM--IND---ADI--DFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMK 147 (313)
T ss_dssp HHHHHHTTTCEEEEESSC--CTT---SCC--SEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCeEEEECCc--CCC---CCc--eEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHHH
Confidence 556677789999988655 222 111 13466788888888999887 8999999999765432100334567777
Q ss_pred HHhcc----CCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhh---cCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEE
Q 006683 192 ALQNV----SSSEIQSRLVLPPISSISDPKEAVRGELKKVQD---KQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVW 264 (635)
Q Consensus 192 ~l~~~----g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~---~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~ 264 (635)
.+++. + +++..... .... + .......++++.+ .++++|++ .+...+..+++++++.|+. .+...
T Consensus 148 ~l~~~~~~~~-~~~~~~~~-~~~~---~-~~~~~~~~~~~l~~~~~~~~ai~~--~~d~~a~g~~~al~~~G~~-~di~v 218 (313)
T 3m9w_A 148 VLKPYVDSGK-IKVVGDQW-VDGW---L-PENALKIMENALTANNNKIDAVVA--SNDATAGGAIQALSAQGLS-GKVAI 218 (313)
T ss_dssp HHHHHHHTTS-EEEEEEEE-CGGG---C-HHHHHHHHHHHHHHTTTCCCEEEE--SSHHHHHHHHHHHHTTTCT-TTSEE
T ss_pred HHHhhccCCC-EEEEeecc-CCCc---C-HHHHHHHHHHHHHhCCCCeeEEEE--CCCchHHHHHHHHHHcCCC-CCcEE
Confidence 77776 6 66654432 1111 1 1233334444433 36788775 5667788899999999987 33444
Q ss_pred Eee
Q 006683 265 IVT 267 (635)
Q Consensus 265 i~~ 267 (635)
++.
T Consensus 219 ig~ 221 (313)
T 3m9w_A 219 SGQ 221 (313)
T ss_dssp CCC
T ss_pred Eec
Confidence 443
No 97
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=98.16 E-value=0.00019 Score=69.98 Aligned_cols=209 Identities=11% Similarity=0.120 Sum_probs=128.5
Q ss_pred EEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEc-CCChhhHHH
Q 006683 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAV 112 (635)
Q Consensus 35 i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~ 112 (635)
-+||++.|.. ..+......+++.+.++.+ +. +.+.++..++....+....++ ..++.+||- |........
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g-----~~--~~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~~~~~ 73 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELG-----YK--IIVEDSQNDSSKELSNVEDLI-QQKVDVLLINPVDSDAVVT 73 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHT-----CE--EEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCSSTTTTHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcC-----cE--EEEecCCCCHHHHHHHHHHHH-HcCCCEEEEeCCchhhhHH
Confidence 3799999864 3444566677777766643 34 445667777777667777777 678887664 433332223
Q ss_pred HHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHC-C-CeEEEEEEEcCCCCCCcchHHHHH
Q 006683 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY-N-WRRVAAIYEDNVYGGDSGKLALLA 190 (635)
Q Consensus 113 v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~-~-w~~vaii~~~~~~g~~~~~~~~~~ 190 (635)
....+...++|+|..... .+ +. +....+..++...+..++++|... | -+++++|.............+.++
T Consensus 74 ~~~~~~~~~iPvV~~~~~--~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~ 146 (283)
T 2ioy_A 74 AIKEANSKNIPVITIDRS--AN---GG--DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFD 146 (283)
T ss_dssp HHHHHHHTTCCEEEESSC--CS---SS--CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCeEEEecCC--CC---Cc--ceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHH
Confidence 344556689999987643 22 11 112345677777788888888665 5 899999986533210034456788
Q ss_pred HHHhcc-CCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEee
Q 006683 191 EALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVT 267 (635)
Q Consensus 191 ~~l~~~-g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~~ 267 (635)
+.+++. | +++..... ... + ..+-...++++.+. .+++|++ .+...+..+++++++.|+ .+...++.
T Consensus 147 ~al~~~~~-~~~~~~~~--~~~---~-~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~al~~~G~--~di~viG~ 215 (283)
T 2ioy_A 147 EAIAKYPD-IKIVAKQA--ADF---D-RSKGLSVMENILQAQPKIDAVFA--QNDEMALGAIKAIEAANR--QGIIVVGF 215 (283)
T ss_dssp HHHTTCTT-EEEEEEEE--CTT---C-HHHHHHHHHHHHHHCSCCCEEEE--SSHHHHHHHHHHHHHTTC--CCCEEEEE
T ss_pred HHHHhCCC-CEEEeecc--CCC---C-HHHHHHHHHHHHHhCCCccEEEE--CCchHHHHHHHHHHHCCC--CCcEEEEe
Confidence 889888 8 77654221 111 1 12333445554432 5677765 666678889999999998 44555555
Q ss_pred Cc
Q 006683 268 NT 269 (635)
Q Consensus 268 ~~ 269 (635)
+.
T Consensus 216 D~ 217 (283)
T 2ioy_A 216 DG 217 (283)
T ss_dssp EC
T ss_pred CC
Confidence 43
No 98
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=98.16 E-value=4.7e-05 Score=75.06 Aligned_cols=191 Identities=12% Similarity=0.166 Sum_probs=123.4
Q ss_pred CCeEEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHH
Q 006683 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (635)
Q Consensus 32 ~~~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (635)
.+++|||++--.+.+.-.....|++-++++..-. .|.++++.+.|.++|+......+.+++ .+++++|++ ..+..+.
T Consensus 6 ~~~~~igi~q~~~hp~ld~~~~G~~~~L~~~G~~-~g~nv~~~~~~a~gd~~~~~~~~~~l~-~~~~DlIia-i~t~aa~ 82 (302)
T 3lkv_A 6 AKTAKVAVSQIVEHPALDATRQGLLDGLKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFV-GENPDVLVG-IATPTAQ 82 (302)
T ss_dssp -CCEEEEEEESCCCHHHHHHHHHHHHHHHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHH-TTCCSEEEE-ESHHHHH
T ss_pred cCCceEEEEEeecChhHHHHHHHHHHHHHhhCcc-cCCcEEEEEEeCCCCHHHHHHHHHHHH-hcCCcEEEE-cCCHHHH
Confidence 4789999886555443445666776555443211 256799999999999999999999999 788998886 4444455
Q ss_pred HHHHhhccCCccEEeecCCCCCCCCCC------CCCceEEEEecCcHHHHHHHHHHHHHC--CCeEEEEEEEcCCCCCCc
Q 006683 112 VVAEIASRVQVPILSFAAPAVTPLSMS------RRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNVYGGDS 183 (635)
Q Consensus 112 ~v~~~~~~~~ip~Is~~~~~~~~~l~~------~~~p~~~r~~p~~~~~~~al~~~l~~~--~w~~vaii~~~~~~g~~~ 183 (635)
.++.. ..++|+|..+.+ +|.-.. ...+++.-+. +.......+++++++ +.+++++||+....++ .
T Consensus 83 a~~~~--~~~iPVVf~~v~--dp~~~~l~~~~~~~g~nvtGv~--~~~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s-~ 155 (302)
T 3lkv_A 83 ALVSA--TKTIPIVFTAVT--DPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANA-V 155 (302)
T ss_dssp HHHHH--CSSSCEEEEEES--CTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHH-H
T ss_pred HHHhh--cCCCCeEEEecC--CcchhhhcccccCCCCcEEEEE--CCcCHHHHHHHHHHhCCCCCEEEEEeCCCcccH-H
Confidence 55443 457999877766 554321 1223444332 222244556666553 6899999998764321 4
Q ss_pred chHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChh
Q 006683 184 GKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLD 243 (635)
Q Consensus 184 ~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~ 243 (635)
...+.+++.+++.| ++++.... .. . .++...++.+.. +.+++++ ..+..
T Consensus 156 ~~~~~~~~~~~~~g-~~~v~~~~-~~-~------~~~~~~~~~l~~-~~d~i~~-~~d~~ 204 (302)
T 3lkv_A 156 SLMELLKLSAAKHG-IKLVEATA-LK-S------ADVQSATQAIAE-KSDVIYA-LIDNT 204 (302)
T ss_dssp HHHHHHHHHHHHTT-CEEEEEEC-SS-G------GGHHHHHHHHHT-TCSEEEE-CSCHH
T ss_pred HHHHHHHHHHHHcC-CEEEEEec-CC-h------HHHHHHHHhccC-CeeEEEE-eCCcc
Confidence 45677888899999 88775432 11 1 456666666654 6788888 66654
No 99
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=98.16 E-value=3.8e-05 Score=75.72 Aligned_cols=204 Identities=12% Similarity=-0.042 Sum_probs=130.1
Q ss_pred CCeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCC--CHHHHHHHHHHHhhcCCeEEEE-cCCCh
Q 006683 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR--DPFQAATAAQELINKEKVKVIA-GMETW 107 (635)
Q Consensus 32 ~~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~--~~~~a~~~~~~li~~~~v~aii-G~~~s 107 (635)
+.+.+||+++|.. ..+...+..+++.+.++.+ +++. +.+... ++....+.+..++ ..++.+|| .|...
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g-----~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~vdgiii~~~~~ 74 (304)
T 3o1i_D 3 GSDEKICAIYPHLKDSYWLSVNYGMVSEAEKQG-----VNLR--VLEAGGYPNKSRQEQQLALCT-QWGANAIILGTVDP 74 (304)
T ss_dssp --CCEEEEEESCSCSHHHHHHHHHHHHHHHHHT-----CEEE--EEECSSTTCHHHHHHHHHHHH-HHTCSEEEECCSST
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHHcC-----CeEE--EEcCCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCCh
Confidence 4568999999965 3444566667777766653 4444 455544 8877777788887 56777666 44433
Q ss_pred hhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCC-----CeEEEEEEEcCC--CC
Q 006683 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYN-----WRRVAAIYEDNV--YG 180 (635)
Q Consensus 108 ~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~-----w~~vaii~~~~~--~g 180 (635)
.........+. .++|+|..... .+.......+.+..+.++....+..++++|...+ -++|+++..... ..
T Consensus 75 ~~~~~~~~~~~-~~iPvV~~~~~--~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~ 151 (304)
T 3o1i_D 75 HAYEHNLKSWV-GNTPVFATVNQ--LDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGT 151 (304)
T ss_dssp TSSTTTHHHHT-TTSCEEECSSC--CCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----
T ss_pred hHHHHHHHHHc-CCCCEEEecCC--CcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchH
Confidence 32223344556 89999988544 2211112234566778888888889999998888 889999976533 23
Q ss_pred CCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhh-hcCceEEEEecCChhHHHHHHHHHHHcCCC
Q 006683 181 GDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQ-DKQSRVFIVLQASLDMTIHLFTEANRMGLV 258 (635)
Q Consensus 181 ~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~-~~~~~vii~~~~~~~~~~~~l~~a~~~g~~ 258 (635)
....+.+++.+++.| +++.... .... + .......++++. ...+++ |+ ++...+..+++++++.|+.
T Consensus 152 --~~R~~gf~~~l~~~~-~~~~~~~--~~~~---~-~~~~~~~~~~~l~~~~~~a-i~--~~d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 152 --KPVTTGFYEAIKNSD-IHIVDSF--WADN---D-KELQRNLVQRVIDMGNIDY-IV--GSAVAIEAAISELRSADKT 218 (304)
T ss_dssp --CHHHHHHHHTTTTBT-EEEEECC--CCCS---C-HHHHHHHHHHHHHHSCCSE-EE--ECHHHHHHHHHHHTTTTCG
T ss_pred --HHHHHHHHHHHhcCC-CEEEEee--cCCC---c-HHHHHHHHHHHHcCCCCCE-EE--ecCcchHHHHHHHHhcCCC
Confidence 455788999999999 8876533 1111 1 122333334333 336788 55 4667888899999999986
No 100
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=98.14 E-value=0.00017 Score=71.03 Aligned_cols=214 Identities=10% Similarity=-0.002 Sum_probs=134.0
Q ss_pred CCeEEEEEEeeCC--CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEe-cCCCCHHHHHHHHHHHhhcCCeEEEEc-CCCh
Q 006683 32 EEVTKIGAIVDAN--SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIR-DHNRDPFQAATAAQELINKEKVKVIAG-METW 107 (635)
Q Consensus 32 ~~~i~IG~i~p~s--~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~-D~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s 107 (635)
+...+||+++|.. ..+...+..+++.+.++.+ |+.+.+... ++..++..-.+.+..++ ..++.+||- +...
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~----g~~~~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiii~~~~~ 80 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYS----DFNISANITHYDPYDYNSFVATSQAVI-EEQPDGVMFAPTVP 80 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTG----GGCEEEEEEEECSSCHHHHHHHHHHHH-TTCCSEEEECCSSG
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHHH----hCCeEEEEEcCCCCCHHHHHHHHHHHH-hcCCCEEEECCCCh
Confidence 4678999999984 4455667777777777652 345666554 34567766666677776 688887664 3333
Q ss_pred hhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCC--eEEEEEEEcC----C--C
Q 006683 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNW--RRVAAIYEDN----V--Y 179 (635)
Q Consensus 108 ~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w--~~vaii~~~~----~--~ 179 (635)
.........+...++|+|..... .+.. +.+-.+.++....+..++++|...|. ++|++|.... . .
T Consensus 81 ~~~~~~~~~~~~~~iPvV~~~~~--~~~~-----~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~ 153 (304)
T 3gbv_A 81 QYTKGFTDALNELGIPYIYIDSQ--IKDA-----PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQ 153 (304)
T ss_dssp GGTHHHHHHHHHHTCCEEEESSC--CTTS-----CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHH
T ss_pred HHHHHHHHHHHHCCCeEEEEeCC--CCCC-----CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchh
Confidence 33344555666779999988654 2211 12345678888888899999988877 9999998532 1 2
Q ss_pred CCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCC
Q 006683 180 GGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGL 257 (635)
Q Consensus 180 g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~ 257 (635)
. ....+.+++.+++.| ..+............ ......++++.+. ++++|++ ..+. +..+++++++.|+
T Consensus 154 ~--~~R~~gf~~~l~~~g-~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~ai~~-~~d~--a~g~~~al~~~g~ 223 (304)
T 3gbv_A 154 Q--ESREIGFRQYMQEHH-PACNILELNLHADLN----IEDSRMLDDFFREHPDVKHGIT-FNSK--VYIIGEYLQQRRK 223 (304)
T ss_dssp H--HHHHHHHHHHHHHHC-TTSEEEEEEEESSCS----SCHHHHHHHHHHHCTTCCEEEE-SSSC--THHHHHHHHHTTC
T ss_pred H--HHHHHHHHHHHHhhC-CCcEEEEeeecCCCH----HHHHHHHHHHHHhCCCeEEEEE-cCcc--hHHHHHHHHHcCC
Confidence 2 345677888888887 443222111111111 1122333333322 6888887 6554 7789999999999
Q ss_pred CCCCeEEEeeCc
Q 006683 258 VGKDSVWIVTNT 269 (635)
Q Consensus 258 ~~~~~~~i~~~~ 269 (635)
.+...++.+.
T Consensus 224 --~di~vig~d~ 233 (304)
T 3gbv_A 224 --SDFSLIGYDL 233 (304)
T ss_dssp --CSCEEEEESC
T ss_pred --CCcEEEEeCC
Confidence 4455555554
No 101
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=98.14 E-value=5.4e-05 Score=74.15 Aligned_cols=212 Identities=11% Similarity=0.077 Sum_probs=132.7
Q ss_pred CCeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhH
Q 006683 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (635)
Q Consensus 32 ~~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (635)
+..-+||+++|.. ..+...+..+++.+.++. |+ ++.+.++..++....+....++ ..++.+||-..... .
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~-----g~--~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~-~ 76 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHK-----GY--SVLLANTAEDIVREREAVGQFF-ERRVDGLILAPSEG-E 76 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TC--EEEEEECTTCHHHHHHHHHHHH-HTTCSEEEECCCSS-C
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHC-----CC--EEEEEeCCCCHHHHHHHHHHHH-HCCCCEEEEeCCCC-C
Confidence 4567999999865 334455666666666653 34 4445666667776666666676 67888777533322 3
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCC--CCCCcchHHH
Q 006683 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLAL 188 (635)
Q Consensus 111 ~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~--~g~~~~~~~~ 188 (635)
......+...++|+|..... .+ .. .+..+..+....+..++++|...|.++++++..... .. ....+.
T Consensus 77 ~~~~~~~~~~~iPvV~~~~~--~~---~~---~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~--~~R~~g 146 (291)
T 3egc_A 77 HDYLRTELPKTFPIVAVNRE--LR---IP---GCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTS--RERLKG 146 (291)
T ss_dssp CHHHHHSSCTTSCEEEESSC--CC---CT---TCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHH--HHHHHH
T ss_pred hHHHHHhhccCCCEEEEecc--cC---CC---CCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCH--HHHHHH
Confidence 34556677789999988655 22 11 234567888888889999998889999999986643 22 445677
Q ss_pred HHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhh--cCceEEEEecCChhHHHHHHHHHHHcCCCC-CCeEEE
Q 006683 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSVWI 265 (635)
Q Consensus 189 ~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~--~~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~~i 265 (635)
+++.+++.| +.+............ ......++++.+ ..+++|++ .+...+..+++++++.|+.- .+...+
T Consensus 147 f~~~l~~~g-~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~vv 219 (291)
T 3egc_A 147 FRAAMSAAG-LPVRQEWIAAGGVRA----DNGRDGAIKVLTGADRPTALLT--SSHRITEGAMQALNVLGLRYGPDVEIV 219 (291)
T ss_dssp HHHHHHHTT-CCCCGGGEEC----------CCHHHHHHHHTC-CCCSEEEE--SSHHHHHHHHHHHHHHTCCBTTTBEEE
T ss_pred HHHHHHHcC-CCCCHHHeEeCCCCh----hHHHHHHHHHHhCCCCCcEEEE--CCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 888898888 654321111111100 111233333332 36788775 66677888999999999863 344445
Q ss_pred eeCc
Q 006683 266 VTNT 269 (635)
Q Consensus 266 ~~~~ 269 (635)
+.+.
T Consensus 220 g~d~ 223 (291)
T 3egc_A 220 SFDN 223 (291)
T ss_dssp EESC
T ss_pred EecC
Confidence 4443
No 102
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=98.13 E-value=0.00028 Score=69.41 Aligned_cols=212 Identities=11% Similarity=-0.011 Sum_probs=131.6
Q ss_pred CeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEE-ecCCCCHHHHHHHHHHHhhcCCeEEEE-cCCChhh
Q 006683 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQI-RDHNRDPFQAATAAQELINKEKVKVIA-GMETWEE 109 (635)
Q Consensus 33 ~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~-~D~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~ 109 (635)
++.+||++.|.. ..+......+++.+.++.+ + ++.+ .++..++....+.+.+++ ..++.+|| .+..+..
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g-----~--~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiii~~~~~~~ 74 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEFN-----L--NASQVGPSSTDAPQQVKIIEDLI-ARKVDAITIVPNDANV 74 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHTT-----E--EEEEECCSSSCHHHHHHHHHHHH-HTTCSEEEECCSCHHH
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHcC-----C--EEEEECCCCCCHHHHHHHHHHHH-HcCCCEEEEecCChHH
Confidence 468999999865 3455667777777777653 3 4443 346678877777778887 67888765 4444443
Q ss_pred HHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHH-CCCe-EEEEEEEcCC--CCCCcch
Q 006683 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-YNWR-RVAAIYEDNV--YGGDSGK 185 (635)
Q Consensus 110 ~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~-~~w~-~vaii~~~~~--~g~~~~~ 185 (635)
.......+...++|+|..... . ... +.+..+..++...+..++++|.. .|.+ +++++..... .. ...
T Consensus 75 ~~~~~~~~~~~~ipvV~~~~~--~--~~~---~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~--~~R 145 (303)
T 3d02_A 75 LEPVFKKARDAGIVVLTNESP--G--QPS---ANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQH--NLW 145 (303)
T ss_dssp HHHHHHHHHHTTCEEEEESCT--T--CTT---CSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHH--HHH
T ss_pred HHHHHHHHHHCCCeEEEEecC--C--CCC---CceEEEecCHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccH--HHH
Confidence 334455666789999987532 1 111 23445677777888888888866 8887 9998875432 22 344
Q ss_pred HHHHHHHHhccC-CeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCCCCCCe
Q 006683 186 LALLAEALQNVS-SSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDS 262 (635)
Q Consensus 186 ~~~~~~~l~~~g-~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~ 262 (635)
.+.+++.+++.+ .+++... .+.... ...+....++++.+. .+++|++ .+...+..+++++++.|+. .+.
T Consensus 146 ~~gf~~~l~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~-~dv 217 (303)
T 3d02_A 146 ADLLVKYQKEHYPDMHEVTR-RMPVAE----SVDDSRRTTLDLMKTYPDLKAVVS--FGSNGPIGAGRAVKEKRAK-NKV 217 (303)
T ss_dssp HHHHHHHHHHHCTTEEESSS-CBSCTT----CHHHHHHHHHHHHHHCTTEEEEEE--SSTTHHHHHHHHHHHTTCT-TTC
T ss_pred HHHHHHHHHhhCCCCEEEEe-ecCCCC----CHHHHHHHHHHHHHhCCCCCEEEE--eCCcchhHHHHHHHhcCCC-CCe
Confidence 567888887654 0443221 111111 113444556665544 4677776 4445777889999999987 444
Q ss_pred EEEeeCc
Q 006683 263 VWIVTNT 269 (635)
Q Consensus 263 ~~i~~~~ 269 (635)
..++.+.
T Consensus 218 ~vig~d~ 224 (303)
T 3d02_A 218 AVYGMMI 224 (303)
T ss_dssp EEEECCC
T ss_pred EEEEeCC
Confidence 5555443
No 103
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=98.12 E-value=0.00032 Score=69.02 Aligned_cols=212 Identities=14% Similarity=0.022 Sum_probs=135.5
Q ss_pred EEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEc-CCChhhHHH
Q 006683 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAV 112 (635)
Q Consensus 35 i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~ 112 (635)
-+||++.|.. ..+......+++.+.++.+ +++.+. .++..++....+....++ ..++.+||- +........
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g-----~~~~~~-~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~~~~~ 77 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALN-----VTVEYR-GAAQYDIQEQITVLEQAI-AKNPAGIAISAIDPVELTD 77 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHT-----CEEEEE-ECSSSCHHHHHHHHHHHH-HHCCSEEEECCSSTTTTHH
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcC-----CEEEEe-CCCcCCHHHHHHHHHHHH-HhCCCEEEEcCCCHHHHHH
Confidence 5799999876 3445567778877777754 445432 467778877777777777 677876664 333333344
Q ss_pred HHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHC--CCeEEEEEEEcCCCCCCcchHHHHH
Q 006683 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNVYGGDSGKLALLA 190 (635)
Q Consensus 113 v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~--~w~~vaii~~~~~~g~~~~~~~~~~ 190 (635)
....+...++|+|..... .+. . +.+..+.++....+..++++|... |-++++++........ ....+.++
T Consensus 78 ~~~~~~~~~iPvV~~~~~--~~~---~--~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~-~~R~~gf~ 149 (305)
T 3g1w_A 78 TINKAVDAGIPIVLFDSG--APD---S--HAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNH-QERTTGFK 149 (305)
T ss_dssp HHHHHHHTTCCEEEESSC--CTT---S--CCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHH-HHHHHHHH
T ss_pred HHHHHHHCCCcEEEECCC--CCC---C--ceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccH-HHHHHHHH
Confidence 455566789999988655 221 1 123346788888889999998777 8999999986533110 34466788
Q ss_pred HHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEeeC
Q 006683 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTN 268 (635)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~ 268 (635)
+.+++.| ..+.....+.... + .......++++.+. ++++|++ .+...+..+++++++.|+. .+...++.+
T Consensus 150 ~~l~~~~-~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~-~di~vig~d 221 (305)
T 3g1w_A 150 ETLEAEF-PAIEVIAVEDGRG---D-SLHSRRVAHQLLEDYPNLAGIFA--TEANGGVGVGDAVRLESRA-GEIQIISFD 221 (305)
T ss_dssp HHHHHHC-TTEEEEEEEECTT---C-HHHHHHHHHHHHHHCTTEEEEEE--SSHHHHHHHHHHHHHTTCT-TTSEEEEES
T ss_pred HHHHhhC-CCCEEEEEecCCC---C-HHHHHHHHHHHHHhCCCceEEEE--CCCcchhhHHHHHHhcCCC-CCeEEEEeC
Confidence 8888776 5444332222221 1 13334445544433 5677665 6667788999999999997 445555555
Q ss_pred c
Q 006683 269 T 269 (635)
Q Consensus 269 ~ 269 (635)
.
T Consensus 222 ~ 222 (305)
T 3g1w_A 222 T 222 (305)
T ss_dssp C
T ss_pred C
Confidence 4
No 104
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=98.12 E-value=0.00013 Score=70.71 Aligned_cols=209 Identities=11% Similarity=0.061 Sum_probs=127.5
Q ss_pred eEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHHH
Q 006683 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (635)
Q Consensus 34 ~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~ 112 (635)
.-+||+++|.. ..+...+..+++.+.++. |+++ .+.++..++....+....++ ..++.+||-....... .
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~--~~~~~~~~~~~~~~~~~~l~-~~~vdgii~~~~~~~~-~ 73 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKA-----GYQL--LLGYSDYSIEQEEKLLSTFL-ESRPAGVVLFGSEHSQ-R 73 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHT-----SCEE--CCEECTTCHHHHHHHHHHHH-TSCCCCEEEESSCCCH-H
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHC-----CCEE--EEEcCCCCHHHHHHHHHHHH-hcCCCEEEEeCCCCCH-H
Confidence 35899999864 334445666666665543 3444 34556667766666667776 6777765532221112 2
Q ss_pred HHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCC--CCCcchHHHHH
Q 006683 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVY--GGDSGKLALLA 190 (635)
Q Consensus 113 v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~--g~~~~~~~~~~ 190 (635)
....+...++|+|..... .+ + +.+..+..++...+..++++|...|.+++++|...... . ....+.++
T Consensus 74 ~~~~l~~~~iPvV~~~~~--~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~--~~R~~gf~ 143 (275)
T 3d8u_A 74 THQLLEASNTPVLEIAEL--SS---K---ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTL--QRQLHGWQ 143 (275)
T ss_dssp HHHHHHHHTCCEEEESSS--CS---S---SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHH--HHHHHHHH
T ss_pred HHHHHHhCCCCEEEEeec--cC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchH--HHHHHHHH
Confidence 334455579999987644 22 1 22345777888888888999888899999999876432 2 34567788
Q ss_pred HHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCCCC-CCeEEEee
Q 006683 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSVWIVT 267 (635)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~~i~~ 267 (635)
+.+++.| +.+.....+.... + ..+....++++.+. .+++|++ .+...+..+++++++.|+.- .+...++.
T Consensus 144 ~~l~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~vvg~ 216 (275)
T 3d8u_A 144 SAMIENY-LTPDHFLTTHEAP---S-SQLGAEGLAKLLLRDSSLNALVC--SHEEIAIGALFECHRRVLKVPTDIAIICL 216 (275)
T ss_dssp HHHHHTT-CCCCCEEECSSCC---C-HHHHHHHHHHHHTTCTTCCEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEEES
T ss_pred HHHHHcC-CCCCccEEEeCCC---C-hhHHHHHHHHHHhCCCCCCEEEE--cCcHHHHHHHHHHHHcCCCCCCceEEEec
Confidence 8999888 7543222221111 1 13334445554433 5788876 55667888999999999853 33444444
Q ss_pred C
Q 006683 268 N 268 (635)
Q Consensus 268 ~ 268 (635)
+
T Consensus 217 d 217 (275)
T 3d8u_A 217 E 217 (275)
T ss_dssp S
T ss_pred C
Confidence 4
No 105
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=98.12 E-value=7.2e-05 Score=74.86 Aligned_cols=212 Identities=11% Similarity=0.093 Sum_probs=130.2
Q ss_pred CCeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhH
Q 006683 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (635)
Q Consensus 32 ~~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (635)
+...+||+++|.. ..+......+++.+.++. |+.+. +.++..++....+....++ ..++++||........
T Consensus 61 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~ 132 (332)
T 2o20_A 61 KRTTTVGVILPTITSTYFAAITRGVDDIASMY-----KYNMI--LANSDNDVEKEEKVLETFL-SKQVDGIVYMGSSLDE 132 (332)
T ss_dssp -CCCEEEEEESCTTCHHHHHHHHHHHHHHHHT-----TCEEE--EEECTTCHHHHHHHHHHHH-HTTCSEEEECSSCCCH
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc-----CCEEE--EEECCCChHHHHHHHHHHH-hCCCCEEEEeCCCCCH
Confidence 3567899999864 344455666666666553 34444 4566667766666666676 6788877753322122
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCC--CCCCcchHHH
Q 006683 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLAL 188 (635)
Q Consensus 111 ~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~--~g~~~~~~~~ 188 (635)
..+ ..+...++|+|..... .+ +... ..+..++...+..++++|...|.++|++|..... .. ....+.
T Consensus 133 ~~~-~~l~~~~iPvV~~~~~--~~---~~~~---~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~--~~R~~G 201 (332)
T 2o20_A 133 KIR-TSLKNSRTPVVLVGTI--DG---DKEI---PSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVEN--TERMVG 201 (332)
T ss_dssp HHH-HHHHHHCCCEEEESCC--CT---TSCS---CEEECCHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHH--HHHHHH
T ss_pred HHH-HHHHhCCCCEEEEccc--cC---CCCC---CEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCcccccH--HHHHHH
Confidence 223 3344579999987644 22 1122 2466777777888899998889999999986543 22 344677
Q ss_pred HHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCC-CCeEEEee
Q 006683 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSVWIVT 267 (635)
Q Consensus 189 ~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~~i~~ 267 (635)
+++.+++.| +.+.....+.... + ..+-...++++.+..+++|++ .+...+..+++++++.|+.- .+...++.
T Consensus 202 f~~al~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~ll~~~~~ai~~--~~d~~A~g~~~al~~~G~~vP~disvig~ 274 (332)
T 2o20_A 202 YQEALLEAN-IEFDENLVFEGNY---S-YEQGKALAERLLERGATSAVV--SHDTVAVGLLSAMMDKGVKVPEDFEIISG 274 (332)
T ss_dssp HHHHHHHTT-CCCCGGGEECSCC---S-HHHHHHHHHHHHHTTCCEEEE--SCHHHHHHHHHHHHHTTCCTTTTCEEEES
T ss_pred HHHHHHHcC-CCCChhhEEeCCC---C-HHHHHHHHHHHhccCCCEEEE--CChHHHHHHHHHHHHcCCCCccCEEEEEe
Confidence 888999988 7654221122111 1 122333444443337899886 55667788999999999853 34445544
Q ss_pred Cc
Q 006683 268 NT 269 (635)
Q Consensus 268 ~~ 269 (635)
+.
T Consensus 275 D~ 276 (332)
T 2o20_A 275 AN 276 (332)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 106
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=98.11 E-value=0.00013 Score=71.34 Aligned_cols=212 Identities=10% Similarity=0.113 Sum_probs=131.9
Q ss_pred CCeEEEEEEeeC-----C-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCC
Q 006683 32 EEVTKIGAIVDA-----N-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGME 105 (635)
Q Consensus 32 ~~~i~IG~i~p~-----s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~ 105 (635)
+..-+||+++|. . ..+...+..+++.+.++. |++ +.+.++..++....+....+. ..++.+||-..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~-----g~~--~~~~~~~~~~~~~~~~~~~~~-~~~vdgiIi~~ 77 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE-----GYA--LYMSTGETEEEIFNGVVKMVQ-GRQIGGIILLY 77 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT-----TCE--EEECCCCSHHHHHHHHHHHHH-TTCCCEEEESC
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHc-----CCE--EEEEeCCCCHHHHHHHHHHHH-cCCCCEEEEeC
Confidence 456789999998 3 344456666766666554 344 445666555554444444454 78888776533
Q ss_pred ChhhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCC--CCCc
Q 006683 106 TWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVY--GGDS 183 (635)
Q Consensus 106 ~s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~--g~~~ 183 (635)
.... ......+...++|+|..... .+.. .. +..+..+....+..++++|...|.++++++...... . .
T Consensus 78 ~~~~-~~~~~~l~~~~iPvV~~~~~--~~~~--~~---~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~--~ 147 (292)
T 3k4h_A 78 SREN-DRIIQYLHEQNFPFVLIGKP--YDRK--DE---ITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVT--R 147 (292)
T ss_dssp CBTT-CHHHHHHHHTTCCEEEESCC--SSCT--TT---SCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHH--H
T ss_pred CCCC-hHHHHHHHHCCCCEEEECCC--CCCC--CC---CCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhH--H
Confidence 2222 23455666789999987654 2211 11 234678888888899999988899999999866432 2 3
Q ss_pred chHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCCCC-C
Q 006683 184 GKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG-K 260 (635)
Q Consensus 184 ~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~ 260 (635)
...+.+++.+++.| +.+.....+.... ........++++.+. .+++|++ .+...+..+++++++.|+.- .
T Consensus 148 ~R~~gf~~~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~ 220 (292)
T 3k4h_A 148 DRLAGMSDALKLAD-IVLPKEYILHFDF----SRESGQQAVEELMGLQQPPTAIMA--TDDLIGLGVLSALSKKGFVVPK 220 (292)
T ss_dssp HHHHHHHHHHHHTT-CCCCGGGEEECCS----SHHHHHHHHHHHHTSSSCCSEEEE--SSHHHHHHHHHHHHHTTCCTTT
T ss_pred HHHHHHHHHHHHcC-CCCChheEEecCC----CHHHHHHHHHHHHcCCCCCcEEEE--cChHHHHHHHHHHHHhCCCCCC
Confidence 44677888999888 6543221111111 113344555555544 6788876 56677888999999999863 3
Q ss_pred CeEEEeeC
Q 006683 261 DSVWIVTN 268 (635)
Q Consensus 261 ~~~~i~~~ 268 (635)
+...++.+
T Consensus 221 di~vig~d 228 (292)
T 3k4h_A 221 DVSIVSFN 228 (292)
T ss_dssp TCEEEEES
T ss_pred eEEEEEec
Confidence 34445444
No 107
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=98.11 E-value=7.4e-05 Score=74.99 Aligned_cols=213 Identities=10% Similarity=0.077 Sum_probs=136.7
Q ss_pred CCeEEEEEEeeC---CCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChh
Q 006683 32 EEVTKIGAIVDA---NSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (635)
Q Consensus 32 ~~~i~IG~i~p~---s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (635)
+..-+||+++|. +..+......+++.+.++. |+. +.+.++..++....+....++ ..++++||-.....
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~-----g~~--~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~ 130 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK-----GRQ--LLLADGKHSAEEERQAIQYLL-DLRCDAIMIYPRFL 130 (338)
T ss_dssp -CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHT-----TCE--EEEEECTTSHHHHHHHHHHHH-HTTCSEEEECCSSS
T ss_pred CCCCEEEEEecCCcccChhHHHHHHHHHHHHHHC-----CCE--EEEEeCCCChHHHHHHHHHHH-hCCCCEEEEeCCCC
Confidence 356789999997 3444456666666666553 344 455667777777666677776 67888777543333
Q ss_pred hHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCC--CCCCcchH
Q 006683 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKL 186 (635)
Q Consensus 109 ~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~--~g~~~~~~ 186 (635)
....+...+...++|+|..... .+ +...+ .+..++...+...+++|...|.+++++|..... .. ....
T Consensus 131 ~~~~~~~~~~~~~iPvV~~~~~--~~---~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~--~~R~ 200 (338)
T 3dbi_A 131 SVDEIDDIIDAHSQPIMVLNRR--LR---KNSSH---SVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTS--IERL 200 (338)
T ss_dssp CHHHHHHHHHHCSSCEEEESSC--CS---SSGGG---EECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHH--HHHH
T ss_pred ChHHHHHHHHcCCCCEEEEcCC--CC---CCCCC---EEEEChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccH--HHHH
Confidence 3455667778889999987654 22 11222 366788888888899998889999999976533 22 3446
Q ss_pred HHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhh--cCceEEEEecCChhHHHHHHHHHHHcCCCC-CCeE
Q 006683 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSV 263 (635)
Q Consensus 187 ~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~--~~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~ 263 (635)
+.+++.+++.| +.+.....+.... + ..+-...++++.+ ..+++|++ .+...+..+++++++.|+.- .+..
T Consensus 201 ~Gf~~al~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~ll~~~~~~~ai~~--~nd~~A~g~~~al~~~G~~vP~di~ 273 (338)
T 3dbi_A 201 AGYKDALAQHG-IALNEKLIANGKW---T-PASGAEGVEMLLERGAKFSALVA--SNDDMAIGAMKALHERGVAVPEQVS 273 (338)
T ss_dssp HHHHHHHHHTT-CCCCGGGEECCCS---S-HHHHHHHHHHHHHTTCCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCE
T ss_pred HHHHHHHHHCC-CCCCcceEEeCCC---C-HHHHHHHHHHHHcCCCCCeEEEE--CChHHHHHHHHHHHHcCCCCCCCeE
Confidence 77888999998 6653222222211 1 1233344454443 36788876 56667888999999999863 3455
Q ss_pred EEeeCc
Q 006683 264 WIVTNT 269 (635)
Q Consensus 264 ~i~~~~ 269 (635)
.++.+.
T Consensus 274 vvg~D~ 279 (338)
T 3dbi_A 274 VIGFDD 279 (338)
T ss_dssp EEEESC
T ss_pred EEEECC
Confidence 555543
No 108
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=98.10 E-value=6.3e-05 Score=73.56 Aligned_cols=211 Identities=15% Similarity=0.090 Sum_probs=129.0
Q ss_pred CeEEEEEEeeC-----CCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCCh
Q 006683 33 EVTKIGAIVDA-----NSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETW 107 (635)
Q Consensus 33 ~~i~IG~i~p~-----s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s 107 (635)
..-+||+++|. +..+...+..+++.+.++. |+++. +.++..++....+....++ ..++.+||.....
T Consensus 3 ~s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~ 74 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAV-----NYFVL--PFPFSEDRSQIDIYRDLIR-SGNVDGFVLSSIN 74 (287)
T ss_dssp CCCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHT-----TCEEE--ECCCCSSTTCCHHHHHHHH-TTCCSEEEECSCC
T ss_pred ceeEEEEEecccccccCChhHHHHHHHHHHHHHHc-----CCEEE--EEeCCCchHHHHHHHHHHH-cCCCCEEEEeecC
Confidence 34689999996 4455566777777776653 34554 4454445443344455565 6788877753322
Q ss_pred hhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCC--CCCCcch
Q 006683 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGK 185 (635)
Q Consensus 108 ~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~--~g~~~~~ 185 (635)
... .....+...++|+|..... .+ ... +..+..++...+..++++|...|.++|++|..... .. ...
T Consensus 75 ~~~-~~~~~l~~~~iPvV~~~~~--~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~--~~R 143 (287)
T 3bbl_A 75 YND-PRVQFLLKQKFPFVAFGRS--NP---DWD---FAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWPEDSRVG--NDR 143 (287)
T ss_dssp TTC-HHHHHHHHTTCCEEEESCC--ST---TCC---CCEEEECHHHHHHHHHHHHHHHTCCCEEEEECCTTCHHH--HHH
T ss_pred CCc-HHHHHHHhcCCCEEEECCc--CC---CCC---CCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCCcccccH--HHH
Confidence 212 2334455679999987644 22 112 23466777888888889987779999999986543 22 345
Q ss_pred HHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhh-c---CceEEEEecCChhHHHHHHHHHHHcCCCC-C
Q 006683 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-K---QSRVFIVLQASLDMTIHLFTEANRMGLVG-K 260 (635)
Q Consensus 186 ~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~-~---~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~ 260 (635)
.+.+++.+++.| +.+.....+.... + ..+-...++++.+ . .+++|++ .+...+..+++++++.|+.- .
T Consensus 144 ~~Gf~~~l~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~~~ai~~--~~d~~a~g~~~al~~~G~~vP~ 216 (287)
T 3bbl_A 144 LQGYLEAMQTAQ-LPIETGYILRGEG---T-FEVGRAMTLHLLDLSPERRPTAIMT--LNDTMAIGAMAAARERGLTIGT 216 (287)
T ss_dssp HHHHHHHHHHTT-CCCCGGGEEECCS---S-HHHHHHHHHHHHTSCTTTSCSEEEE--SSHHHHHHHHHHHHHTTCCBTT
T ss_pred HHHHHHHHHHcC-CCCChhhEEeCCC---C-HHHHHHHHHHHHhhCCCCCCcEEEE--CCcHHHHHHHHHHHHcCCCCCC
Confidence 667888898888 7653211111111 1 1333445555544 3 5788876 56667888999999999863 3
Q ss_pred CeEEEeeCc
Q 006683 261 DSVWIVTNT 269 (635)
Q Consensus 261 ~~~~i~~~~ 269 (635)
+...++.+.
T Consensus 217 di~vig~d~ 225 (287)
T 3bbl_A 217 DLAIIGFDD 225 (287)
T ss_dssp TBEEEEESC
T ss_pred CEEEEEECC
Confidence 455555543
No 109
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=98.08 E-value=2.9e-05 Score=75.45 Aligned_cols=205 Identities=10% Similarity=0.039 Sum_probs=117.7
Q ss_pred EEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHHHHH
Q 006683 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (635)
Q Consensus 36 ~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (635)
+||+++|.. ..+......+++.+.++. |+++ .+.++..++....+....++ ..++.+||........ ...
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~--~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~-~~~ 71 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLEQ-----RYDL--ALFPILSLARLKRYLENTTL-AYLTDGLILASYDLTE-RFE 71 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGGG-----TCEE--EECCCCSCCCCC----------CCCSEEEEESCCCC-----
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHC-----CCEE--EEEeCCCchhhHHHHHHHHH-hCCCCEEEEecCCCCH-HHH
Confidence 489999853 333445555655555443 3444 44555555443344455565 6778877653322222 334
Q ss_pred HhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcC-C-----CCCCc-chHH
Q 006683 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN-V-----YGGDS-GKLA 187 (635)
Q Consensus 115 ~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~-~-----~g~~~-~~~~ 187 (635)
..+...++|+|..... .+ + +..+..++...+..++++|...|.+++++|.... . .. . ...+
T Consensus 72 ~~~~~~~iPvV~~~~~--~~---~-----~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~--~~~R~~ 139 (276)
T 2h0a_A 72 EGRLPTERPVVLVDAQ--NP---R-----YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTV--FAERMA 139 (276)
T ss_dssp --CCSCSSCEEEESSC--CT---T-----SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---CCH--HHHHHH
T ss_pred HHHhhcCCCEEEEecc--CC---C-----CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCcccccccchh--HHHHHH
Confidence 4566789999988654 22 1 3457788888888999999888999999998764 3 23 4 5567
Q ss_pred HHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCCCC-CCeEE
Q 006683 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSVW 264 (635)
Q Consensus 188 ~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~~ 264 (635)
.+++.+++.| +.+.....+.... ...+....++++.+. .+++|++ .+...+..+++++++.|+.- .+...
T Consensus 140 gf~~~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~v 212 (276)
T 2h0a_A 140 GFQEALKEAG-RPFSPDRLYITRH----SQEGGRLALRHFLEKASPPLNVFA--GADQVALGVLEEAVRLGLTPGRDVRV 212 (276)
T ss_dssp HHHHHHHHTT-CCCCGGGEEEECS----SHHHHHHHHHHHHTTCCSSEEEEC--SSHHHHHHHHHHHHTTSCTTTTSEEE
T ss_pred HHHHHHHHcC-CCCChHHeeecCC----ChHHHHHHHHHHHhCCCCCCEEEE--CCcHHHHHHHHHHHHcCCCCCCCeEE
Confidence 8889999988 6643211111111 113334455555443 4777764 66777888999999999863 33444
Q ss_pred EeeC
Q 006683 265 IVTN 268 (635)
Q Consensus 265 i~~~ 268 (635)
++.+
T Consensus 213 vg~d 216 (276)
T 2h0a_A 213 LGFD 216 (276)
T ss_dssp EEES
T ss_pred EEeC
Confidence 4443
No 110
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=98.07 E-value=4.4e-05 Score=74.77 Aligned_cols=210 Identities=17% Similarity=0.128 Sum_probs=118.9
Q ss_pred CCeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEe-cCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhh
Q 006683 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIR-DHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (635)
Q Consensus 32 ~~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~-D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (635)
+...+||+++|.. ..+......+++.+.++. |+++. +. ++..++....+....++ ..++.+||.......
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~ 77 (290)
T 3clk_A 6 KSSNVIAAVVSSVRTNFAQQILDGIQEEAHKN-----GYNLI--IVYSGSADPEEQKHALLTAI-ERPVMGILLLSIALT 77 (290)
T ss_dssp --CCEEEEECCCCSSSHHHHHHHHHHHHHHTT-----TCEEE--EEC----------CHHHHHH-SSCCSEEEEESCC--
T ss_pred ccCCEEEEEeCCCCChHHHHHHHHHHHHHHHc-----CCeEE--EEeCCCCCHHHHHHHHHHHH-hcCCCEEEEecccCC
Confidence 3557899999854 344445556666555542 35554 34 55555555455566666 678887775332222
Q ss_pred HHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCC--CCCCcchHH
Q 006683 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLA 187 (635)
Q Consensus 110 ~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~--~g~~~~~~~ 187 (635)
. .....+...++|+|..... .+. + +..+..++...+..++++|...|.+++++|..... .. ....+
T Consensus 78 ~-~~~~~l~~~~iPvV~~~~~--~~~------~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~--~~R~~ 145 (290)
T 3clk_A 78 D-DNLQLLQSSDVPYCFLSMG--FDD------D-RPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYTG--RKRLA 145 (290)
T ss_dssp ---CHHHHHCC--CEEEESCC----C------C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTH--HHHHH
T ss_pred H-HHHHHHHhCCCCEEEEcCC--CCC------C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCCCCCcch--HHHHH
Confidence 2 2334455689999987644 221 1 33467788888888999998889999999986532 33 45567
Q ss_pred HHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhh-hcCceEEEEecCChhHHHHHHHHHHHcCCCC-CCeEEE
Q 006683 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQ-DKQSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSVWI 265 (635)
Q Consensus 188 ~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~-~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~~i 265 (635)
.+++.+++.| +.+.....+.... + ..+-...++++. ..++++|++ .+...+..+++++++.|+.- .+...+
T Consensus 146 gf~~~l~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~vv 218 (290)
T 3clk_A 146 GYKKALKEAN-IAINQEWIKPGDY---S-YTSGEQAMKAFGKNTDLTGIIA--ASDMTAIGILNQASSFGIEVPKDLSIV 218 (290)
T ss_dssp HHHHHHHHTT-CCCCGGGEECCCS---S-HHHHHHHHHHHCTTCCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHcC-CCCCcceEEcCCC---C-hhhHHHHHHHHhccCCCcEEEE--CCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 8888999988 7653211121111 1 123334455544 346788876 55667888899999999853 334444
Q ss_pred eeC
Q 006683 266 VTN 268 (635)
Q Consensus 266 ~~~ 268 (635)
+.+
T Consensus 219 g~d 221 (290)
T 3clk_A 219 SID 221 (290)
T ss_dssp EEE
T ss_pred EeC
Confidence 443
No 111
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=98.05 E-value=0.00018 Score=70.90 Aligned_cols=216 Identities=10% Similarity=-0.008 Sum_probs=131.4
Q ss_pred eEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEc-CCChhhHH
Q 006683 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETA 111 (635)
Q Consensus 34 ~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~ 111 (635)
+++||++.|.. ..+......+++.+.++.+ +++ .+.++ .++....+.+..++ ..++.+||- |.......
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g-----~~~--~~~~~-~~~~~~~~~i~~l~-~~~vdgiii~~~~~~~~~ 72 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLG-----FEV--IKIAV-PDGEKTLNAIDSLA-ASGAKGFVICTPDPKLGS 72 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHHT-----EEE--EEEEC-CSHHHHHHHHHHHH-HTTCCEEEEECSCGGGHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHcC-----CEE--EEeCC-CCHHHHHHHHHHHH-HcCCCEEEEeCCCchhhH
Confidence 58999999965 4445667777777777763 444 45666 47777777788888 667886664 44444445
Q ss_pred HHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHH-HCCC-----eEEEEEE-EcCC--CCCC
Q 006683 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR-KYNW-----RRVAAIY-EDNV--YGGD 182 (635)
Q Consensus 112 ~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~-~~~w-----~~vaii~-~~~~--~g~~ 182 (635)
.....+...++|+|..... .+.......+.+..+..++...+...+++|. +.+- .+++++. .... ..
T Consensus 73 ~~~~~~~~~~iPvV~~~~~--~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~-- 148 (306)
T 8abp_A 73 AIVAKARGYDMKVIAVDDQ--FVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTA-- 148 (306)
T ss_dssp HHHHHHHHTTCEEEEESSC--CBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHH--
T ss_pred HHHHHHHHCCCcEEEeCCC--CCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHH--
Confidence 5556677789999988743 2222211111233466777777777777663 3333 3888886 3332 12
Q ss_pred cchHHHHHHHHhccCCe---EEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceE-EEEecCChhHHHHHHHHHHHcC
Q 006683 183 SGKLALLAEALQNVSSS---EIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRV-FIVLQASLDMTIHLFTEANRMG 256 (635)
Q Consensus 183 ~~~~~~~~~~l~~~g~~---~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~v-ii~~~~~~~~~~~~l~~a~~~g 256 (635)
....+.+++.+++.| . ++..... ... ........++++.+. ++++ +|+ +.+...+..+++++++.|
T Consensus 149 ~~R~~Gf~~~l~~~g-~~~~~~~~~~~--~~~----~~~~~~~~~~~~l~~~~~~~a~~i~-~~nD~~A~g~~~al~~~g 220 (306)
T 8abp_A 149 RRRTTGSMDALKAAG-FPEKQIYQVPT--KSN----DIPGAFDAANSMLVQHPEVKHWLIV-GMNDSTVLGGVRATEGQG 220 (306)
T ss_dssp HHHHHHHHHHHHHHT-CCGGGEEEEEC--SSS----SHHHHHHHHHHHHTTCTTCSEEEEE-CSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC-CCCcEEEeecc--CCC----ChHHHHHHHHHHHHhCCCCceEEEE-eCCcHHHHHHHHHHHHcC
Confidence 344667888888876 4 2333221 111 113344555555544 4566 344 677778889999999999
Q ss_pred CCCCCeEEEeeCch
Q 006683 257 LVGKDSVWIVTNTV 270 (635)
Q Consensus 257 ~~~~~~~~i~~~~~ 270 (635)
+...+...++.+..
T Consensus 221 ~~v~di~vvG~D~~ 234 (306)
T 8abp_A 221 FKAADIIGIGINGV 234 (306)
T ss_dssp CCGGGEEEEEESSG
T ss_pred CCCCceEEEEeCcH
Confidence 86333444555443
No 112
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=98.05 E-value=8.3e-05 Score=74.43 Aligned_cols=212 Identities=10% Similarity=0.096 Sum_probs=130.3
Q ss_pred CCeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhH
Q 006683 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (635)
Q Consensus 32 ~~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (635)
+...+||+++|.. ..+...+..+++.+.++. |+.+. +.++..++....+....++ ..++++||........
T Consensus 58 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~ 129 (332)
T 2hsg_A 58 KKTTTVGVIIPDISNIFYAELARGIEDIATMY-----KYNII--LSNSDQNQDKELHLLNNML-GKQVDGIIFMSGNVTE 129 (332)
T ss_dssp C-CCEEEEEEC--CCSHHHHHHHHHHHHHHHH-----TCEEE--EEECCSHHHHHHHHHHHTS-CCSSCCEEECCSSCCH
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc-----CCEEE--EEeCCCChHHHHHHHHHHH-hCCCcEEEEecCCCCH
Confidence 3567999999853 445556777777777664 34444 4556556655555566665 6788877653332222
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcC-C--CCCCcchHH
Q 006683 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN-V--YGGDSGKLA 187 (635)
Q Consensus 111 ~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~-~--~g~~~~~~~ 187 (635)
.....+...++|+|..... .+ +.. +..+..++...+..++++|...|.++|++|.... . .. ....+
T Consensus 130 -~~~~~l~~~~iPvV~~~~~--~~---~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~--~~R~~ 198 (332)
T 2hsg_A 130 -EHVEELKKSPVPVVLAASI--ES---TNQ---IPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINH--AKKVK 198 (332)
T ss_dssp -HHHHHHTTSSSCEEEESCC--CS---CTT---SCEEEECHHHHHHHHHHHHHTTTCSCEEEEESCTTSHHHH--TTHHH
T ss_pred -HHHHHHHhCCCCEEEEccc--cC---CCC---CCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCcccCccH--HHHHH
Confidence 2334456689999987644 22 112 2246677777888888999888999999998764 2 23 45577
Q ss_pred HHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCCCC-CCeEE
Q 006683 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSVW 264 (635)
Q Consensus 188 ~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~~ 264 (635)
.+++.+++.| +.+.....+.... + ..+-...++++.+. .+++|++ .+...+..+++++++.|+.- .+...
T Consensus 199 Gf~~al~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~ll~~~~~~~ai~~--~nd~~A~g~~~al~~~G~~vP~disv 271 (332)
T 2hsg_A 199 GYKRALTESG-LPVRDSYIVEGDY---T-YDSGIEAVEKLLEEDEKPTAIFV--GTDEMALGVIHGAQDRGLNVPNDLEI 271 (332)
T ss_dssp HHHHHHHTTT-CCCCGGGEEECCS---S-HHHHHHHHHHHHHSSSCCSEEEE--SSHHHHHHHHHHHHHTTCCHHHHCEE
T ss_pred HHHHHHHHcC-CCCChheEEeCCC---C-HHHHHHHHHHHHcCCCCCeEEEE--CChHHHHHHHHHHHHcCCCCCCCeEE
Confidence 8999999998 7643211111111 1 12333455555443 5788876 56667788999999999852 22344
Q ss_pred EeeCc
Q 006683 265 IVTNT 269 (635)
Q Consensus 265 i~~~~ 269 (635)
++.+.
T Consensus 272 vg~D~ 276 (332)
T 2hsg_A 272 IGFDN 276 (332)
T ss_dssp EEESC
T ss_pred EEECC
Confidence 44443
No 113
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=98.04 E-value=0.00022 Score=71.63 Aligned_cols=218 Identities=12% Similarity=0.050 Sum_probs=131.2
Q ss_pred CCeEEEEEEeeC--CCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCC--CCHHHHHHHHHHHhhcCCeEEEEcCCCh
Q 006683 32 EEVTKIGAIVDA--NSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHN--RDPFQAATAAQELINKEKVKVIAGMETW 107 (635)
Q Consensus 32 ~~~i~IG~i~p~--s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~--~~~~~a~~~~~~li~~~~v~aiiG~~~s 107 (635)
+...+||+++|. +..+...+..+++.+.++. |+++.+...++. .++....+....++ ..++.+||-+...
T Consensus 41 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~ 114 (342)
T 1jx6_A 41 QRPIKISVVYPGQQVSDYWVRNIASFEKRLYKL-----NINYQLNQVFTRPNADIKQQSLSLMEAL-KSKSDYLIFTLDT 114 (342)
T ss_dssp SSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHT-----TCCEEEEEEECCTTCCHHHHHHHHHHHH-HTTCSEEEECCSS
T ss_pred CCceEEEEEecCCcccHHHHHHHHHHHHHHHHc-----CCeEEEEecCCCCccCHHHHHHHHHHHH-hcCCCEEEEeCCh
Confidence 567899999996 4444456666766666553 455666655555 67766666677777 6788877765443
Q ss_pred hhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHH-CC-CeEEEEEEEcCC-CCCCcc
Q 006683 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-YN-WRRVAAIYEDNV-YGGDSG 184 (635)
Q Consensus 108 ~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~-~~-w~~vaii~~~~~-~g~~~~ 184 (635)
.........+...++|+|...... .+.......+.+..+.+++...+..++++|.. .| .++|++|..... .. ..
T Consensus 115 ~~~~~~~~~~~~~~ip~V~~~~~~-~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~--~~ 191 (342)
T 1jx6_A 115 TRHRKFVEHVLDSTNTKLILQNIT-TPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYIS--DV 191 (342)
T ss_dssp STTHHHHHHHHHHCSCEEEEETCC-SCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHH--HH
T ss_pred HhHHHHHHHHHHcCCCEEEEecCC-CcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchh--hH
Confidence 322233344555689998773220 12100011123345778888888888998866 47 999999975543 22 44
Q ss_pred hHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCCCCCCe
Q 006683 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGKDS 262 (635)
Q Consensus 185 ~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~ 262 (635)
..+.+++.+++.| . +.....+.... + ..+-...++++.+. .+++|++ .+...+..+++++++.|+ .+.
T Consensus 192 R~~Gf~~~l~~~~-~-~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~ai~~--~nd~~A~g~~~al~~~g~--~di 261 (342)
T 1jx6_A 192 RGDTFIHQVNRDN-N-FELQSAYYTKA---T-KQSGYDAAKASLAKHPDVDFIYA--CSTDVALGAVDALAELGR--EDI 261 (342)
T ss_dssp HHHHHHHHHHHHH-C-CEEEEEECCCS---S-HHHHHHHHHHHHHHCCCCSEEEE--SSHHHHHHHHHHHHHHTC--TTS
T ss_pred HHHHHHHHHHhCC-C-cEEEEEecCCC---C-HHHHHHHHHHHHHhCCCccEEEE--CCChhHHHHHHHHHHcCC--CCc
Confidence 5677888888888 6 22221222211 1 12233444444432 5788776 556678889999999998 444
Q ss_pred EEEeeC
Q 006683 263 VWIVTN 268 (635)
Q Consensus 263 ~~i~~~ 268 (635)
..++.+
T Consensus 262 ~vvg~D 267 (342)
T 1jx6_A 262 MINGWG 267 (342)
T ss_dssp EEBCSB
T ss_pred EEEEeC
Confidence 444443
No 114
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=98.04 E-value=5.8e-05 Score=73.94 Aligned_cols=211 Identities=9% Similarity=0.031 Sum_probs=126.3
Q ss_pred CCeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHH---HHHHHhhcCCeEEEEcCCCh
Q 006683 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAAT---AAQELINKEKVKVIAGMETW 107 (635)
Q Consensus 32 ~~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~---~~~~li~~~~v~aiiG~~~s 107 (635)
+...+||++.|.. ..+...+..+++.+.++. |+++. +.++..++....+ ....++ ..++.+||.....
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~ 77 (290)
T 2rgy_A 6 QQLGIIGLFVPTFFGSYYGTILKQTDLELRAV-----HRHVV--VATGCGESTPREQALEAVRFLI-GRDCDGVVVISHD 77 (290)
T ss_dssp --CCEEEEECSCSCSHHHHHHHHHHHHHHHHT-----TCEEE--EECCCSSSCHHHHHHHHHHHHH-HTTCSEEEECCSS
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHC-----CCEEE--EEeCCCchhhhhhHHHHHHHHH-hcCccEEEEecCC
Confidence 3557899999864 334455666666666553 45554 4455555544444 555666 6788877753332
Q ss_pred hhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCC--CCCCcch
Q 006683 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGK 185 (635)
Q Consensus 108 ~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~--~g~~~~~ 185 (635)
... .....+...++|+|..... .+. .. +..+..++...+..++++|...|.++|++|..... .. ...
T Consensus 78 ~~~-~~~~~l~~~~iPvV~~~~~--~~~---~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~--~~R 146 (290)
T 2rgy_A 78 LHD-EDLDELHRMHPKMVFLNRA--FDA---LP---DASFCPDHRRGGELAAATLIEHGHRKLAVISGPFTASDN--VER 146 (290)
T ss_dssp SCH-HHHHHHHHHCSSEEEESSC--CTT---SG---GGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHH--HHH
T ss_pred CCH-HHHHHHhhcCCCEEEEccc--cCC---CC---CCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccH--HHH
Confidence 222 2233445579999987644 221 11 22466777788888899998889999999987643 22 344
Q ss_pred HHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhh--cCceEEEEecCChhHHHHHHHHHHHcCCCC-CCe
Q 006683 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVG-KDS 262 (635)
Q Consensus 186 ~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~--~~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~ 262 (635)
.+.+++.+++.| +.+.....+.... + ..+-...++++.+ ..+++|++ .+...+..+++++++.|+.- .+.
T Consensus 147 ~~Gf~~al~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~G~~vP~di 219 (290)
T 2rgy_A 147 LDGFFDELARHG-IARDSVPLIESDF---S-PEGGYAATCQLLESKAPFTGLFC--ANDTMAVSALARFQQLGISVPGDV 219 (290)
T ss_dssp HHHHHHHHHTTT-CCGGGSCEEECCS---S-HHHHHHHHHHHHHHTCCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHHHHHcC-CCCCcccEEecCC---C-hhHHHHHHHHHHhCCCCCcEEEE--CCcHHHHHHHHHHHHcCCCCCCce
Confidence 667888899888 6543211111111 1 1223344444433 36888876 56667888999999999863 334
Q ss_pred EEEeeC
Q 006683 263 VWIVTN 268 (635)
Q Consensus 263 ~~i~~~ 268 (635)
..++.+
T Consensus 220 ~vvg~D 225 (290)
T 2rgy_A 220 SVIGYD 225 (290)
T ss_dssp EEEEEE
T ss_pred EEEEeC
Confidence 444443
No 115
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=98.03 E-value=0.0003 Score=68.95 Aligned_cols=213 Identities=8% Similarity=0.085 Sum_probs=128.0
Q ss_pred CCeEEEEEEeeCC------CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCC
Q 006683 32 EEVTKIGAIVDAN------SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGME 105 (635)
Q Consensus 32 ~~~i~IG~i~p~s------~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~ 105 (635)
+..-+||+++|.. ..+...+..+++.+.++ . |+.+ .+.++..++....+....+. ..++.+||-..
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~---~--g~~~--~~~~~~~~~~~~~~~~~~l~-~~~vdGiI~~~ 76 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQ---H--GYGT--QTTVSNNMNDLMDEVYKMIK-QRMVDAFILLY 76 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHT---T--TCEE--EECCCCSHHHHHHHHHHHHH-TTCCSEEEESC
T ss_pred CCCcEEEEEeecCCcccccChHHHHHHHHHHHHHHH---C--CCEE--EEEcCCCChHHHHHHHHHHH-hCCcCEEEEcC
Confidence 4567899999642 33334455555544443 2 3444 45566555554444455555 78888777533
Q ss_pred ChhhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcch
Q 006683 106 TWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (635)
Q Consensus 106 ~s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~ 185 (635)
.... ......+...++|+|..... .+... .. +..+..+....+..++++|...|.+++++|............
T Consensus 77 ~~~~-~~~~~~l~~~~iPvV~i~~~--~~~~~-~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R 149 (295)
T 3hcw_A 77 SKEN-DPIKQMLIDESMPFIVIGKP--TSDID-HQ---FTHIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVSKDR 149 (295)
T ss_dssp CCTT-CHHHHHHHHTTCCEEEESCC--CSSGG-GG---SCEEEECHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHH
T ss_pred cccC-hHHHHHHHhCCCCEEEECCC--Ccccc-CC---ceEEecCcHHHHHHHHHHHHHcCCccEEEEcCCccchhHHHH
Confidence 2222 23445566789999987644 22110 01 234667777888888999888899999999876442100345
Q ss_pred HHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc-----CceEEEEecCChhHHHHHHHHHHHcCCCC-
Q 006683 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-----QSRVFIVLQASLDMTIHLFTEANRMGLVG- 259 (635)
Q Consensus 186 ~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~-----~~~vii~~~~~~~~~~~~l~~a~~~g~~~- 259 (635)
.+.+++.+++.| +.+... ..... ..+....++++.+. .+++|++ .+...+..+++++++.|+.-
T Consensus 150 ~~Gf~~al~~~g-~~~~~~-~~~~~------~~~~~~~~~~~l~~~~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~vP 219 (295)
T 3hcw_A 150 IQGFETVASQFN-LDYQII-ETSNE------REVILNYMQNLHTRLKDPNIKQAIIS--LDAMLHLAILSVLYELNIEIP 219 (295)
T ss_dssp HHHHHHHHHHTT-CEEEEE-EECSC------HHHHHHHHHHHHHHHTCTTSCEEEEE--SSHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHcC-CCeeEE-eccCC------HHHHHHHHHHHHhhcccCCCCcEEEE--CChHHHHHHHHHHHHcCCCCC
Confidence 678889999999 876522 11111 12333344444322 5788765 66677888999999999863
Q ss_pred CCeEEEeeCc
Q 006683 260 KDSVWIVTNT 269 (635)
Q Consensus 260 ~~~~~i~~~~ 269 (635)
.+...++.+.
T Consensus 220 ~di~vig~D~ 229 (295)
T 3hcw_A 220 KDVMTATFND 229 (295)
T ss_dssp TTEEEEEECC
T ss_pred CceEEEEeCC
Confidence 3455555443
No 116
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=98.00 E-value=0.00021 Score=69.22 Aligned_cols=209 Identities=12% Similarity=0.106 Sum_probs=128.7
Q ss_pred CCeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhH
Q 006683 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (635)
Q Consensus 32 ~~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (635)
+..-+||+++|.. ..+...+..+++.+.++. |+++ .+.++..++..-.+....++ ..++.+||-.....
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~--~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~-- 74 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESR-----GYIG--VLFDANADIEREKTLLRAIG-SRGFDGLILQSFSN-- 74 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTT-----TCEE--EEEECTTCHHHHHHHHHHHH-TTTCSEEEEESSCC--
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHC-----CCEE--EEEeCCCCHHHHHHHHHHHH-hCCCCEEEEecCCc--
Confidence 4567999999975 333445555555555443 3444 45666667766666666666 77888776533333
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCC-CCCCcchHHHH
Q 006683 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV-YGGDSGKLALL 189 (635)
Q Consensus 111 ~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~-~g~~~~~~~~~ 189 (635)
......+...++|+|..... .+ +...+ .+..+....+..++++|...|-++++++..... ........+.+
T Consensus 75 ~~~~~~l~~~~iPvV~i~~~--~~---~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf 146 (276)
T 3jy6_A 75 PQTVQEILHQQMPVVSVDRE--MD---ACPWP---QVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGI 146 (276)
T ss_dssp HHHHHHHHTTSSCEEEESCC--CT---TCSSC---EEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEecc--cC---CCCCC---EEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHH
Confidence 44555667789999988644 22 21223 466788888889999998899999999998764 21002334556
Q ss_pred HHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhh-cCceEEEEecCChhHHHHHHHHHHHcCCCC-CCeEEEee
Q 006683 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSVWIVT 267 (635)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~-~~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~~i~~ 267 (635)
++.+++.+ . + .+..... ..........+.++. ..+++|++ .+...+..+++++++.|+.- .+...++.
T Consensus 147 ~~~l~~~~-~-~----~~~~~~~--~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~vig~ 216 (276)
T 3jy6_A 147 LAAAQDVD-V-L----EVSESSY--NHSEVHQRLTQLITQNDQKTVAFA--LKERWLLEFFPNLIISGLIDNQTVTATGF 216 (276)
T ss_dssp HTTCSEEE-E-E----EECSSSC--CHHHHHHHHHHHHHSSSSCEEEEE--SSHHHHHHHSHHHHHSSSCCSSSEEEEEB
T ss_pred HHHHHhCC-c-E----EEecccc--CCcHHHHHHHHHHhcCCCCcEEEE--eCcHHHHHHHHHHHHcCCCCCCcEEEEEE
Confidence 66666655 3 1 1222110 111334444555543 36788775 67778888999999999864 34444444
Q ss_pred C
Q 006683 268 N 268 (635)
Q Consensus 268 ~ 268 (635)
+
T Consensus 217 d 217 (276)
T 3jy6_A 217 A 217 (276)
T ss_dssp C
T ss_pred C
Confidence 3
No 117
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=98.00 E-value=0.00026 Score=69.76 Aligned_cols=211 Identities=14% Similarity=0.143 Sum_probs=129.8
Q ss_pred CCeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhH
Q 006683 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (635)
Q Consensus 32 ~~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (635)
+..-+||+++|.. ..+...+..+++.+.++.+ +.+. +.++..++....+....++ ..++.+||-.......
T Consensus 13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g-----~~~~--~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~ 84 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGHS-----TDVL--LGQIDAPPRGTQQLSRLVS-EGRVDGVLLQRREDFD 84 (303)
T ss_dssp ----CEEEEESCTTSTTHHHHHHHHHHHHHHTT-----CCEE--EEECCSTTHHHHHHHHHHH-SCSSSEEEECCCTTCC
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCC-----CEEE--EEeCCCChHHHHHHHHHHH-hCCCcEEEEecCCCCc
Confidence 3567899999965 4455677777777766643 4443 4555566665555566666 7888877754333222
Q ss_pred H-HHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHH
Q 006683 111 A-VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALL 189 (635)
Q Consensus 111 ~-~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~ 189 (635)
. .+..+ .. ++|+|..... .+. ..+ .+..+....+...+++|...|-+++++|.............+.+
T Consensus 85 ~~~~~~l-~~-~iPvV~i~~~--~~~----~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 153 (303)
T 3kke_A 85 DDMLAAV-LE-GVPAVTINSR--VPG----RVG---SVILDDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGY 153 (303)
T ss_dssp HHHHHHH-HT-TSCEEEESCC--CTT----CCC---EEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHH
T ss_pred HHHHHHH-hC-CCCEEEECCc--CCC----CCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHH
Confidence 2 34444 44 9999988755 332 223 36678888888889999889999999998654321003456778
Q ss_pred HHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhh-----hh--cCceEEEEecCChhHHHHHHHHHHHcCCCC-CC
Q 006683 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKV-----QD--KQSRVFIVLQASLDMTIHLFTEANRMGLVG-KD 261 (635)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l-----~~--~~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~ 261 (635)
++.+++.| +.+.......... ....-...++++ .+ ..+++|++ .+...+..+++++++.|+.- .+
T Consensus 154 ~~al~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~l~~~~~~~ai~~--~nd~~A~g~~~al~~~G~~vP~d 226 (303)
T 3kke_A 154 LETLASAG-LRSEAAWVVDAGW----EADAGSAALNTLYRGANLGKPDGPTAVVV--ASVNAAVGALSTALRLGLRVPED 226 (303)
T ss_dssp HHHHHHTT-CCCCGGGEEECCS----SHHHHHHHHHHHHHHHCTTSTTSCSEEEE--SSHHHHHHHHHHHHHTTCCTTTT
T ss_pred HHHHHHcC-CCCCcceEEecCC----ChHHHHHHHHHhcchhhhcCCCCCcEEEE--CCHHHHHHHHHHHHHcCCCCCCc
Confidence 88999988 6643211111111 113334455555 33 36788876 56677888999999999863 34
Q ss_pred eEEEeeC
Q 006683 262 SVWIVTN 268 (635)
Q Consensus 262 ~~~i~~~ 268 (635)
...++.+
T Consensus 227 i~vig~D 233 (303)
T 3kke_A 227 LSIVGIN 233 (303)
T ss_dssp CEEEEES
T ss_pred eEEEEEc
Confidence 4455544
No 118
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=97.99 E-value=5.8e-05 Score=73.45 Aligned_cols=207 Identities=11% Similarity=0.035 Sum_probs=127.1
Q ss_pred CCeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhH
Q 006683 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (635)
Q Consensus 32 ~~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (635)
+..-+||+++|.. ..+...+..+++.+.++. |+.+.+ .+.. ++....+....++ ..++.+|| .......
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~-~~~~~~~~~~~l~-~~~vdgiI-~~~~~~~ 72 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPK-----GYRLSV--IDSL-TSQAGTDPITSAL-SMRPDGII-IAQDIPD 72 (280)
T ss_dssp -CCCEEEEEESCTTSGGGHHHHHHHHHHHGGG-----TCEEEE--ECSS-SSCSSSCHHHHHH-TTCCSEEE-EESCC--
T ss_pred CccCEEEEEeCCCCChHHHHHHHHHHHHHHHC-----CCEEEE--EeCC-CchHHHHHHHHHH-hCCCCEEE-ecCCCCh
Confidence 3567899999865 445567777777666654 344544 4443 4433334455555 78888888 3322222
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHH
Q 006683 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (635)
Q Consensus 111 ~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~ 190 (635)
..+.. .++|+|..... .+ .....+ .+..+....+..++++|...|.++++++....... ....+.++
T Consensus 73 ~~~~~----~~iPvV~~~~~--~~--~~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~--~~R~~gf~ 139 (280)
T 3gyb_A 73 FTVPD----SLPPFVIAGTR--IT--QASTHD---SVANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAG--LRRFESFE 139 (280)
T ss_dssp ----------CCCEEEESCC--CS--SSCSTT---EEEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHH--HHHHHHHH
T ss_pred hhHhh----cCCCEEEECCC--CC--CCCCCC---EEEechHHHHHHHHHHHHHCCCCeEEEEeCCCchH--HHHHHHHH
Confidence 22222 89999988755 31 222223 35678888888999999888999999998765434 66678899
Q ss_pred HHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCCCC-CCeEEEee
Q 006683 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSVWIVT 267 (635)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~~i~~ 267 (635)
+.+++.| ..+.... ..... + ..+....++++.+. .+++|++ .+...+..+++++++.|+.- .+...++.
T Consensus 140 ~~l~~~~-~~~~~~~-~~~~~---~-~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~vvg~ 211 (280)
T 3gyb_A 140 ATMRAHG-LEPLSND-YLGPA---V-EHAGYTETLALLKEHPEVTAIFS--SNDITAIGALGAARELGLRVPEDLSIIGY 211 (280)
T ss_dssp HHHHHTT-CCCEECC-CCSCC---C-HHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHHHTCCTTTTCEEEEE
T ss_pred HHHHHcC-cCCCccc-ccCCC---C-HHHHHHHHHHHHhCCCCCCEEEE--CChHHHHHHHHHHHHcCCCCCCeeEEEEE
Confidence 9999998 7655332 22111 1 13334445554433 5788875 56777888999999999863 34444554
Q ss_pred Cc
Q 006683 268 NT 269 (635)
Q Consensus 268 ~~ 269 (635)
+.
T Consensus 212 d~ 213 (280)
T 3gyb_A 212 DN 213 (280)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 119
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=97.95 E-value=0.00045 Score=69.26 Aligned_cols=211 Identities=12% Similarity=0.099 Sum_probs=128.4
Q ss_pred CeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHH
Q 006683 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (635)
Q Consensus 33 ~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (635)
..-+||+++|.. ..+...+..+++.+.++. |+++. +.++..++....+....++ ..++.+||-.......
T Consensus 57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~- 127 (340)
T 1qpz_A 57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK-----GYTLI--LGNAWNNLEKQRAYLSMMA-QKRVDGLLVMCSEYPE- 127 (340)
T ss_dssp CCSEEEEEESCSCSHHHHHHHHHHHHHHHHT-----TCEEE--EEECTTCHHHHHHHHHHHH-HTTCSEEEECCSCCCH-
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc-----CCEEE--EEeCCCCHHHHHHHHHHHH-cCCCCEEEEeCCCCCh-
Confidence 457899999864 344455666666666553 35554 4566677766666666676 6788877743222111
Q ss_pred HHHHhhc-cCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCC--CCCCcchHHH
Q 006683 112 VVAEIAS-RVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLAL 188 (635)
Q Consensus 112 ~v~~~~~-~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~--~g~~~~~~~~ 188 (635)
.....+. ..++|+|..... .+. . +....+..++...+..++++|...|.+++++|..... .. ....+.
T Consensus 128 ~~~~~l~~~~~iPvV~~~~~--~~~---~--~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~--~~R~~G 198 (340)
T 1qpz_A 128 PLLAMLEEYRHIPMVVMDWG--EAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTG--AGRLAG 198 (340)
T ss_dssp HHHHHHHTTTTSCEEEEEES--SCC---C--SSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHH--HHHHHH
T ss_pred HHHHHHHhhCCCCEEEEecc--cCC---C--CCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeCCCccccH--HHHHHH
Confidence 1223333 369999987644 221 1 1123466777777888889887779999999976533 22 344677
Q ss_pred HHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhh--cCceEEEEecCChhHHHHHHHHHHHcCCCC-CCeEEE
Q 006683 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSVWI 265 (635)
Q Consensus 189 ~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~--~~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~~i 265 (635)
+++.+++.| +.+.....+.... + ..+-...++++.+ ..+++|++ .+...+..+++++++.|+.- .+...+
T Consensus 199 f~~al~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~ll~~~~~~~ai~~--~nd~~A~g~~~al~~~G~~vP~disvi 271 (340)
T 1qpz_A 199 FMKAMEEAM-IKVPESWIVQGDF---E-PESGYRAMQQILSQPHRPTAVFC--GGDIMAMGALCAADEMGLRVPQDVSLI 271 (340)
T ss_dssp HHHHHHHTT-CCCCGGGBCCCCS---S-HHHHHHHHHHHHTSSSCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHCC-CCCChhheEeCCC---C-HHHHHHHHHHHHcCCCCCcEEEE--CCHHHHHHHHHHHHHcCCCCCCCeEEE
Confidence 888999888 6543221111111 1 1233344555544 36788876 55667788999999999853 344445
Q ss_pred eeC
Q 006683 266 VTN 268 (635)
Q Consensus 266 ~~~ 268 (635)
+.+
T Consensus 272 g~D 274 (340)
T 1qpz_A 272 GYD 274 (340)
T ss_dssp EEE
T ss_pred eEC
Confidence 444
No 120
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=97.94 E-value=0.00042 Score=67.65 Aligned_cols=209 Identities=13% Similarity=0.122 Sum_probs=128.1
Q ss_pred CCeEEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHH
Q 006683 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (635)
Q Consensus 32 ~~~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (635)
+..-+||++++.+..+...+..+++.+.++. |+++.+...+...+ -.+....++ ..++.+||-........
T Consensus 10 ~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~~~~~~~~---~~~~~~~l~-~~~vdgiIi~~~~~~~~ 80 (289)
T 3k9c_A 10 ASSRLLGVVFELQQPFHGDLVEQIYAAATRR-----GYDVMLSAVAPSRA---EKVAVQALM-RERCEAAILLGTRFDTD 80 (289)
T ss_dssp ---CEEEEEEETTCHHHHHHHHHHHHHHHHT-----TCEEEEEEEBTTBC---HHHHHHHHT-TTTEEEEEEETCCCCHH
T ss_pred CCCCEEEEEEecCCchHHHHHHHHHHHHHHC-----CCEEEEEeCCCCHH---HHHHHHHHH-hCCCCEEEEECCCCCHH
Confidence 3567899999544555556666666666554 45565544443322 344455565 78898777533322223
Q ss_pred HHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHH
Q 006683 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAE 191 (635)
Q Consensus 112 ~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~ 191 (635)
.+ ..+.. ++|+|..... .+ ... +..+..++...+...+++|...|.++|+++........ ....+.+++
T Consensus 81 ~~-~~~~~-~iPvV~i~~~--~~---~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~-~~R~~Gf~~ 149 (289)
T 3k9c_A 81 EL-GALAD-RVPALVVARA--SG---LPG---VGAVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPGG-ADRRAGFLA 149 (289)
T ss_dssp HH-HHHHT-TSCEEEESSC--CS---STT---SEEEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTTH-HHHHHHHHH
T ss_pred HH-HHHHc-CCCEEEEcCC--CC---CCC---CCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCccH-HHHHHHHHH
Confidence 33 34455 9999987654 22 222 23467788888888999998889999999987654321 455778999
Q ss_pred HHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhh--cCceEEEEecCChhHHHHHHHHHHHcCCCC-CCeEEEeeC
Q 006683 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSVWIVTN 268 (635)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~--~~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~~i~~~ 268 (635)
.+++.| +.+... .+.... ...+-...++++.+ ..+++|++ .+...+..+++++++.|+.- .+...++.+
T Consensus 150 al~~~g-~~~~~~-~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~vP~di~vig~D 221 (289)
T 3k9c_A 150 AMDRHG-LSASAT-VVTGGT----TETEGAEGMHTLLEMPTPPTAVVA--FNDRCATGVLDLLVRSGRDVPADISVVGYD 221 (289)
T ss_dssp HHHHTT-CGGGEE-EECCCS----SHHHHHHHHHHHHTSSSCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHCC-CCCCcc-EEECCC----CHHHHHHHHHHHHcCCCCCCEEEE--CChHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 999998 764332 222221 11333445555544 36788875 66677888999999999863 334444443
No 121
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=97.93 E-value=9.1e-05 Score=74.05 Aligned_cols=205 Identities=12% Similarity=0.088 Sum_probs=127.8
Q ss_pred CCeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhH
Q 006683 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (635)
Q Consensus 32 ~~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (635)
+...+||+++|.. ..+...+..+++.+.++. |+.+. +.++..++....+....++ ..++.+|| .......
T Consensus 58 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~-~~~vdgiI-~~~~~~~ 128 (330)
T 3ctp_A 58 KNSKTIGLMVPNISNPFFNQMASVIEEYAKNK-----GYTLF--LCNTDDDKEKEKTYLEVLQ-SHRVAGII-ASRSQCE 128 (330)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCEEE--EEECTTCHHHHHHHHHHHH-HTTCSEEE-EETCCCS
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHC-----CCEEE--EEeCCCChHHHHHHHHHHH-hCCCCEEE-ECCCCCH
Confidence 3567899999964 334455666666666542 45554 4566667766666677776 67888888 4332211
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCC--CCCCcchHHH
Q 006683 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLAL 188 (635)
Q Consensus 111 ~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~--~g~~~~~~~~ 188 (635)
+.+...++|+|..... .+. ..+ .+..++...+..++++|...|.++|++|..... .. ....+.
T Consensus 129 ----~~l~~~~iPvV~~~~~--~~~----~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~--~~R~~G 193 (330)
T 3ctp_A 129 ----DEYANIDIPVVAFENH--ILD----NII---TISSDNYNGGRMAFDHLYEKGCRKILHIKGPEVFEAT--ELRYKG 193 (330)
T ss_dssp ----GGGTTCCSCEEEESSC--CCT----TSC---EEEECHHHHHHHHHHHHHHTTCCSEEEEECCTTCHHH--HHHHHH
T ss_pred ----HHHHhcCCCEEEEecc--CCC----CCC---EEEeCHHHHHHHHHHHHHHCCCCeEEEEeCCccCccH--HHHHHH
Confidence 3355789999988654 322 223 356777777888889988889999999987643 23 445677
Q ss_pred HHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhh-cCceEEEEecCChhHHHHHHHHHHHcCCCC-CCeEEEe
Q 006683 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSVWIV 266 (635)
Q Consensus 189 ~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~-~~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~~i~ 266 (635)
+++.+++.| +.+. ...+.... +. .+-...++++.+ .++++|++ .+...+..+++++++.|+.- .+...++
T Consensus 194 f~~al~~~g-~~~~-~~~~~~~~---~~-~~~~~~~~~ll~~~~~~ai~~--~~d~~A~g~~~al~~~G~~vP~disvvg 265 (330)
T 3ctp_A 194 FLDGARAKD-LEID-FIEFQHDF---QV-KMLEEDINSMKDIVNYDGIFV--FNDIAAATVMRALKKRGVSIPQEVQIIG 265 (330)
T ss_dssp HHHHHHHTT-CCCE-EEECSSSC---CG-GGGGCCCTTGGGGGGSSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEEC
T ss_pred HHHHHHHcC-CCcc-eeEEcCCC---CH-HHHHHHHHHHhcCCCCcEEEE--CCHHHHHHHHHHHHHcCCCCCCCeEEEE
Confidence 888999999 7665 32222211 00 111123333333 36788886 45566778999999999863 3344444
Q ss_pred eC
Q 006683 267 TN 268 (635)
Q Consensus 267 ~~ 268 (635)
.+
T Consensus 266 ~D 267 (330)
T 3ctp_A 266 FD 267 (330)
T ss_dssp SB
T ss_pred EC
Confidence 33
No 122
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=97.92 E-value=0.00028 Score=68.84 Aligned_cols=211 Identities=8% Similarity=0.051 Sum_probs=125.3
Q ss_pred CCeEEEEEEeeCCC---cCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChh
Q 006683 32 EEVTKIGAIVDANS---QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (635)
Q Consensus 32 ~~~i~IG~i~p~s~---~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (635)
+..-+||+++|... .+......+++.+.++ . |+.+.+ .+...++... ....+++...++.+||-.....
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~---~--g~~~~~--~~~~~~~~~~-~~~~~~l~~~~vdgiIi~~~~~ 77 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLST---T--QYHLVV--TPHIHAKDSM-VPIRYILETGSADGVIISKIEP 77 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTT---S--SCEEEE--CCBSSGGGTT-HHHHHHHHHTCCSEEEEESCCT
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHH---c--CCEEEE--ecCCcchhHH-HHHHHHHHcCCccEEEEecCCC
Confidence 45678999999753 3334444454444333 2 455544 4443333222 2334444357777665322221
Q ss_pred hHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCC--CCCcchH
Q 006683 109 ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVY--GGDSGKL 186 (635)
Q Consensus 109 ~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~--g~~~~~~ 186 (635)
.. .....+...++|+|..... .+ ... +-.+..+....+..++++|...|-+++++|...... . ....
T Consensus 78 ~~-~~~~~l~~~~iPvV~i~~~--~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~--~~R~ 146 (288)
T 3gv0_A 78 ND-PRVRFMTERNMPFVTHGRS--DM---GIE---HAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFH--DHAR 146 (288)
T ss_dssp TC-HHHHHHHHTTCCEEEESCC--CS---SCC---CEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHH--HHHH
T ss_pred Cc-HHHHHHhhCCCCEEEECCc--CC---CCC---CcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchH--HHHH
Confidence 11 3344556789999987644 22 212 234667888888899999988899999999866432 2 4456
Q ss_pred HHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCCCC-CCeE
Q 006683 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSV 263 (635)
Q Consensus 187 ~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~ 263 (635)
+.+++.+++.| +.+.....+.... ...+....++++.+. .+++|++ .+...+..+++++++.|+.- .+..
T Consensus 147 ~gf~~~l~~~g-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~vP~di~ 219 (288)
T 3gv0_A 147 KGFNRGIRDFG-LTEFPIDAVTIET----PLEKIRDFGQRLMQSSDRPDGIVS--ISGSSTIALVAGFEAAGVKIGEDVD 219 (288)
T ss_dssp HHHHHHHHHTT-CEECCCCSCCTTS----CHHHHHHHHHHHTTSSSCCSEEEE--SCHHHHHHHHHHHHTTTCCTTTSCE
T ss_pred HHHHHHHHHcC-CCcchhheecccc----chHHHHHHHHHHHhCCCCCcEEEE--cCcHHHHHHHHHHHHcCCCCCCceE
Confidence 77888999999 7654332222111 123344555655543 5788875 66677888999999999863 3344
Q ss_pred EEeeC
Q 006683 264 WIVTN 268 (635)
Q Consensus 264 ~i~~~ 268 (635)
.++.+
T Consensus 220 vig~d 224 (288)
T 3gv0_A 220 IVSKQ 224 (288)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 44443
No 123
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=97.92 E-value=0.0014 Score=63.22 Aligned_cols=208 Identities=10% Similarity=0.092 Sum_probs=124.2
Q ss_pred EEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEc-CCChhhHHHH
Q 006683 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (635)
Q Consensus 36 ~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (635)
+||++.|.. ..+......+++.+.++.+ +++ .+.++..++..-.+....++ ..++.+||- +.........
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~g-----~~~--~~~~~~~~~~~~~~~i~~l~-~~~vdgiIi~~~~~~~~~~~ 74 (271)
T 2dri_A 3 TIALVVSTLNNPFFVSLKDGAQKEADKLG-----YNL--VVLDSQNNPAKELANVQDLT-VRGTKILLINPTDSDAVGNA 74 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHHT-----CEE--EEEECTTCHHHHHHHHHHHT-TTTEEEEEECCSSTTTTHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHcC-----cEE--EEeCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCChHHHHHH
Confidence 689999864 3444456666666666543 444 44566667766555666666 788987764 3332222233
Q ss_pred HHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHC--CCeEEEEEEEcCCCCCCcchHHHHHH
Q 006683 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY--NWRRVAAIYEDNVYGGDSGKLALLAE 191 (635)
Q Consensus 114 ~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~--~w~~vaii~~~~~~g~~~~~~~~~~~ 191 (635)
...+...++|+|..... .+ ... ....+..++..-+...+++|... +-+++++|.............+.+++
T Consensus 75 ~~~~~~~~iPvV~i~~~--~~---~~~--~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (271)
T 2dri_A 75 VKMANQANIPVITLDRQ--AT---KGE--VVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 147 (271)
T ss_dssp HHHHHHTTCCEEEESSC--CS---SSC--CSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCcEEEecCC--CC---CCc--eeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHH
Confidence 44456679999987644 22 111 11235677777778888888655 56899999855332100334567888
Q ss_pred HHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhh--cCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEeeCc
Q 006683 192 ALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (635)
Q Consensus 192 ~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~--~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~ 269 (635)
.+++.| +.+.... . ... +. ..-...++++.+ ..+++|++ .+...+..+++++++.|+ .+...++.+.
T Consensus 148 al~~~g-~~~~~~~-~-~~~---~~-~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~al~~~g~--~dv~vvGfD~ 216 (271)
T 2dri_A 148 AVAAHK-FNVLASQ-P-ADF---DR-IKGLNVMQNLLTAHPDVQAVFA--QNDEMALGALRALQTAGK--SDVMVVGFDG 216 (271)
T ss_dssp HHHHHT-CEEEEEE-E-CTT---CH-HHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHHHTC--CSCEEEEEEC
T ss_pred HHhcCC-CEEEEec-C-CCC---CH-HHHHHHHHHHHHhCCCccEEEE--CCCcHHHHHHHHHHHcCC--CCcEEEEecC
Confidence 898889 8765432 1 111 11 222334444433 25788775 666778899999999998 3455555443
No 124
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=97.92 E-value=0.00049 Score=65.73 Aligned_cols=200 Identities=11% Similarity=0.030 Sum_probs=125.3
Q ss_pred EEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHHHH
Q 006683 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (635)
Q Consensus 35 i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v 113 (635)
-+||+++|.. ..+......+++.+.++.+ +.+ .+.++..++..-.+....++ ..++.+||-........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g-----~~~--~~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~~-- 72 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQG-----YDP--IMMESQFSPQLVAEHLGVLK-RRNIDGVVLFGFTGITE-- 72 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHHT-----CEE--EEEECTTCHHHHHHHHHHHH-TTTCCEEEEECCTTCCT--
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHcC-----CEE--EEEeCCCcHHHHHHHHHHHH-hcCCCEEEEecCccccH--
Confidence 3799999864 3344456667666666543 444 34456667666555566666 67787666432221111
Q ss_pred HHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEc--C-CCCCCcchHHHHH
Q 006683 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYED--N-VYGGDSGKLALLA 190 (635)
Q Consensus 114 ~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~--~-~~g~~~~~~~~~~ 190 (635)
..+...++|+|..... . +.+..+..++...+..++++|...|.++|+++... + ... ....+.++
T Consensus 73 -~~l~~~~~pvV~~~~~--~--------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~--~~R~~gf~ 139 (255)
T 1byk_A 73 -EMLAHWQSSLVLLARD--A--------KGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTG--KRRHEAYL 139 (255)
T ss_dssp -TTSGGGSSSEEEESSC--C--------SSCEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTT--HHHHHHHH
T ss_pred -HHHHhcCCCEEEEccc--c--------CCCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccH--HHHHHHHH
Confidence 2344568999887533 2 11235667888888888999988899999999864 2 233 45577889
Q ss_pred HHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCCeEEEeeCc
Q 006683 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKDSVWIVTNT 269 (635)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~~~~i~~~~ 269 (635)
+.+++.| +.+.. +.... + ..+-...++++.+.++++|++ .+...+..+++++++.|+ .+...++.+.
T Consensus 140 ~al~~~g-~~~~~---~~~~~---~-~~~~~~~~~~~l~~~~~ai~~--~~d~~A~g~~~al~~~g~--~di~vig~d~ 206 (255)
T 1byk_A 140 AFCKAHK-LHPVA---ALPGL---A-MKQGYENVAKVITPETTALLC--ATDTLALGASKYLQEQRI--DTLQLASVGN 206 (255)
T ss_dssp HHHHHTT-CCCEE---ECCCS---C-HHHHHHHSGGGCCTTCCEEEE--SSHHHHHHHHHHHHHTTC--CSCEEEEECC
T ss_pred HHHHHcC-CCcce---eecCC---c-cchHHHHHHHHhcCCCCEEEE--eChHHHHHHHHHHHHcCC--CcEEEEEeCC
Confidence 9999998 76431 22111 1 123334455554457888876 566678889999999998 4455555543
No 125
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=97.89 E-value=0.00023 Score=69.01 Aligned_cols=204 Identities=10% Similarity=0.054 Sum_probs=119.7
Q ss_pred CCeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhH
Q 006683 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (635)
Q Consensus 32 ~~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (635)
+..-+||+++|.. ..+...+..+++.+.++. |+++ .+.++..++....+....++ ..++.+||-...+ .
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~-----g~~~--~~~~~~~~~~~~~~~~~~l~-~~~~dgiIi~~~~--~ 75 (277)
T 3e61_A 6 RKSKLIGLLLPDMSNPFFTLIARGVEDVALAH-----GYQV--LIGNSDNDIKKAQGYLATFV-SHNCTGMISTAFN--E 75 (277)
T ss_dssp ----CEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCCE--EEEECTTCHHHHHHHHHHHH-HTTCSEEEECGGG--H
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHC-----CCEE--EEEeCCCCHHHHHHHHHHHH-hCCCCEEEEecCC--h
Confidence 3567899999974 344455666666666554 3334 44666667766666666666 6788877653322 2
Q ss_pred HHHHH-hhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHH
Q 006683 111 AVVAE-IASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALL 189 (635)
Q Consensus 111 ~~v~~-~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~ 189 (635)
. ... .+...++|+|..... .+.. . .+..+....+..++++|...|.++++++.............+.+
T Consensus 76 ~-~~~~~l~~~~iPvV~~~~~--~~~~-----~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf 144 (277)
T 3e61_A 76 N-IIENTLTDHHIPFVFIDRI--NNEH-----N---GISTNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGI 144 (277)
T ss_dssp H-HHHHHHHHC-CCEEEGGGC--C-----------------HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHH
T ss_pred H-HHHHHHHcCCCCEEEEecc--CCCC-----C---eEEechHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHH
Confidence 2 234 566779999988755 2211 1 56788888888999999888999999998654321003456778
Q ss_pred HHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhh-cCceEEEEecCChhHHHHHHHHHHHcCCCC-CCeEEEee
Q 006683 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSVWIVT 267 (635)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~-~~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~~i~~ 267 (635)
++.+++.| +.+.. . +.... +. .+.... ++. .++++|++ .+...+..+++++++.|+.- .+...++.
T Consensus 145 ~~~l~~~~-~~~~~-~-~~~~~---~~-~~~~~~---l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~vig~ 212 (277)
T 3e61_A 145 KYILDQQR-IDYKM-L-EATLL---DN-DKKFID---LIKELSIDSIIC--SNDLLAINVLGIVQRYHFKVPAEIQIIGY 212 (277)
T ss_dssp HHHHHC----CEEE-E-EGGGG---GS-HHHHHH---HHHHHTCCEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEECS
T ss_pred HHHHHHcC-CCccc-e-ecCCC---CH-HHHHHH---hhcCCCCCEEEE--CCcHHHHHHHHHHHHcCCCCCCceEEEee
Confidence 89999998 77654 2 22111 01 222222 333 37888876 56777888999999999863 33444443
Q ss_pred C
Q 006683 268 N 268 (635)
Q Consensus 268 ~ 268 (635)
+
T Consensus 213 d 213 (277)
T 3e61_A 213 D 213 (277)
T ss_dssp B
T ss_pred C
Confidence 3
No 126
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=97.86 E-value=0.00023 Score=69.70 Aligned_cols=210 Identities=10% Similarity=0.098 Sum_probs=131.2
Q ss_pred EEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCC-hh---h
Q 006683 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET-WE---E 109 (635)
Q Consensus 35 i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~-s~---~ 109 (635)
-+||+++|.. ..+...+..+++.+.++. |+.+ .+.++..++....+....++ ..++.+||-... +. .
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~--~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~~~~~~ 87 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQ-----GYSM--LLTSTNNNPDNERRGLENLL-SQHIDGLIVEPTKSALQTP 87 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHT-----TCEE--EEEECTTCHHHHHHHHHHHH-HTCCSEEEECCSSTTSCCT
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHC-----CCEE--EEEeCCCChHHHHHHHHHHH-HCCCCEEEEecccccccCC
Confidence 6899999975 345556777777766663 3444 45566677777677777777 678887664332 21 2
Q ss_pred HHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCC-CCCCcchHHH
Q 006683 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV-YGGDSGKLAL 188 (635)
Q Consensus 110 ~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~-~g~~~~~~~~ 188 (635)
.......+...++|+|..... .+. ...+ .+..+....+..++++|...|.++++++..... .. ....+.
T Consensus 88 ~~~~~~~~~~~~iPvV~~~~~--~~~---~~~~---~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~--~~R~~g 157 (298)
T 3tb6_A 88 NIGYYLNLEKNGIPFAMINAS--YAE---LAAP---SFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQG--VKRMNG 157 (298)
T ss_dssp THHHHHHHHHTTCCEEEESSC--CTT---CSSC---EEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHH--HHHHHH
T ss_pred cHHHHHHHHhcCCCEEEEecC--cCC---CCCC---EEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccH--HHHHHH
Confidence 334455666789999988654 222 1223 366788888889999998889999999987654 22 445677
Q ss_pred HHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--C--ceEEEEecCChhHHHHHHHHHHHcCCCC-CCeE
Q 006683 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--Q--SRVFIVLQASLDMTIHLFTEANRMGLVG-KDSV 263 (635)
Q Consensus 189 ~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~--~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~ 263 (635)
+++.+++.| +.+........... +........++++.+. + +++|++ .+...+..+++++++.|+.- .+..
T Consensus 158 f~~~l~~~g-~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~ 232 (298)
T 3tb6_A 158 FIQAHRERE-LFPSPDMIVTFTTE--EKESKLLEKVKATLEKNSKHMPTAILC--YNDEIALKVIDMLREMDLKVPEDMS 232 (298)
T ss_dssp HHHHHHHTT-CCCCGGGEEEECHH--HHTTHHHHHHHHHHHHTTTSCCSEEEC--SSHHHHHHHHHHHHHTTCCTTTTCE
T ss_pred HHHHHHHcC-CCCCcceEEEeccc--chhhhHHHHHHHHHhcCCCCCCeEEEE--eCcHHHHHHHHHHHHcCCCCCCceE
Confidence 888999888 65432111111110 0001112333333332 3 778775 66777888999999999863 3344
Q ss_pred EEee
Q 006683 264 WIVT 267 (635)
Q Consensus 264 ~i~~ 267 (635)
.++.
T Consensus 233 vvg~ 236 (298)
T 3tb6_A 233 IVGY 236 (298)
T ss_dssp EECS
T ss_pred EEec
Confidence 4433
No 127
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=97.83 E-value=7.5e-05 Score=73.03 Aligned_cols=209 Identities=9% Similarity=0.063 Sum_probs=126.8
Q ss_pred CCeEEEEEEeeC--CCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhh
Q 006683 32 EEVTKIGAIVDA--NSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (635)
Q Consensus 32 ~~~i~IG~i~p~--s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (635)
+..-+||+++|. +..+...+..+++.+.++.+ +.+.+...+...+. ..+....+. ..++.+||-......
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g-----~~~~~~~~~~~~~~--~~~~~~~l~-~~~vdgiIi~~~~~~ 80 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFLRGLQSKLAKQN-----YNYNVVICPYKTDC--LHLEKGISK-ENSFDAAIIANISNY 80 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTT-----TCSEEEEEEECTTC--GGGCGGGST-TTCCSEEEESSCCHH
T ss_pred CCCceEEEEeccccchHHHHHHHHHHHHHHHHcC-----CeEEEEecCCCchh--HHHHHHHHh-ccCCCEEEEecCCcc
Confidence 456899999993 34455667777777766643 34444333222111 112233333 678887775444333
Q ss_pred HHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCC--CCCcchHH
Q 006683 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVY--GGDSGKLA 187 (635)
Q Consensus 110 ~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~--g~~~~~~~ 187 (635)
...+.. +...++|+|..... .+ . +-.+..+....+..++++|...|.++++++...... . ....+
T Consensus 81 ~~~~~~-~~~~~iPvV~~~~~--~~-----~---~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~--~~R~~ 147 (289)
T 3g85_A 81 DLEYLN-KASLTLPIILFNRL--SN-----K---YSSVNVDNYKMGEKASLLFAKKRYKSAAAILTESLNDAM--DNRNK 147 (289)
T ss_dssp HHHHHH-HCCCSSCEEEESCC--CS-----S---SEEEEECHHHHHHHHHHHHHHTTCCBCEEEECCCSSHHH--HHHHH
T ss_pred cHHHHH-hccCCCCEEEECCC--CC-----C---CCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCCcccccH--HHHHH
Confidence 333333 34679999988654 22 1 234678888888899999988899999999876432 2 34567
Q ss_pred HHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCCCC-CCeEE
Q 006683 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSVW 264 (635)
Q Consensus 188 ~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~~ 264 (635)
.+++.+++.| +.+.....+.... ...+....++++.+. .+++|++ .+...+..+++++++.|+.- .+...
T Consensus 148 gf~~~l~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~vP~di~v 220 (289)
T 3g85_A 148 GFIETCHKNG-IKISENHIIAAEN----SIHGGVDAAKKLMKLKNTPKALFC--NSDSIALGVISVLNKRQISIPDDIEI 220 (289)
T ss_dssp HHHHHHHHTT-CBCCGGGEEECCS----SHHHHHHHHHHHTTSSSCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHHHcC-CCCChhheeccCC----CHHHHHHHHHHHHcCCCCCcEEEE--cCCHHHHHHHHHHHHcCCCCCCceEE
Confidence 7888999988 6543211111111 113344455555443 5788875 66777888999999999863 34444
Q ss_pred EeeC
Q 006683 265 IVTN 268 (635)
Q Consensus 265 i~~~ 268 (635)
++.+
T Consensus 221 ig~d 224 (289)
T 3g85_A 221 VAIG 224 (289)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 4444
No 128
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=97.82 E-value=0.0005 Score=67.72 Aligned_cols=210 Identities=11% Similarity=0.120 Sum_probs=128.9
Q ss_pred CCeEEEEEEeeC------CCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCC
Q 006683 32 EEVTKIGAIVDA------NSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGME 105 (635)
Q Consensus 32 ~~~i~IG~i~p~------s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~ 105 (635)
+..-+||+++|. +..+...+..+++.+.++.+ ++ +.+.++..++....+....+. ..++.+||-..
T Consensus 20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g-----~~--~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~ 91 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRG-----YS--TRMTVSENSGDLYHEVKTMIQ-SKSVDGFILLY 91 (305)
T ss_dssp -CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHT-----CE--EEECCCSSHHHHHHHHHHHHH-TTCCSEEEESS
T ss_pred CCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCC-----CE--EEEEeCCCChHHHHHHHHHHH-hCCCCEEEEeC
Confidence 356789999997 23344566667666666543 33 445666555554444455555 78888766432
Q ss_pred ChhhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcch
Q 006683 106 TWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGK 185 (635)
Q Consensus 106 ~s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~ 185 (635)
.... ......+...++|+|..... . ..... ..+..+....+..++++|...|-++|++|............
T Consensus 92 ~~~~-~~~~~~l~~~~iPvV~i~~~--~---~~~~~---~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R 162 (305)
T 3huu_A 92 SLKD-DPIEHLLNEFKVPYLIVGKS--L---NYENI---IHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTEDR 162 (305)
T ss_dssp CBTT-CHHHHHHHHTTCCEEEESCC--C---SSTTC---CEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHHHHH
T ss_pred CcCC-cHHHHHHHHcCCCEEEECCC--C---cccCC---cEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcccchhHHH
Confidence 2222 23445566789999988644 2 22222 34678888888889999988899999999876542100345
Q ss_pred HHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhh-hh--cCceEEEEecCChhHHHHHHHHHHHcCCCC-CC
Q 006683 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKV-QD--KQSRVFIVLQASLDMTIHLFTEANRMGLVG-KD 261 (635)
Q Consensus 186 ~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l-~~--~~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~ 261 (635)
.+.+++.+++.| +.+.. . +... ... ....++++ .+ ..+++|++ .+...+..+++++++.|+.- .+
T Consensus 163 ~~Gf~~~l~~~g-~~~~~-~-~~~~-----~~~-~~~~~~~~~l~~~~~~~ai~~--~nd~~A~g~~~al~~~g~~vP~d 231 (305)
T 3huu_A 163 SVGFKQYCDDVK-ISNDC-V-VIKS-----MND-LRDFIKQYCIDASHMPSVIIT--SDVMLNMQLLNVLYEYQLRIPED 231 (305)
T ss_dssp HHHHHHHHHHTT-CCCCE-E-EECS-----HHH-HHHHC--------CCCSEEEE--SSHHHHHHHHHHHHHTTCCTTTT
T ss_pred HHHHHHHHHHcC-CCccc-E-EecC-----cHH-HHHHHHHhhhcCCCCCCEEEE--CChHHHHHHHHHHHHcCCCCCcc
Confidence 677888999998 76554 1 2111 112 33344444 32 36788875 66777888999999999863 34
Q ss_pred eEEEeeCc
Q 006683 262 SVWIVTNT 269 (635)
Q Consensus 262 ~~~i~~~~ 269 (635)
...++.+.
T Consensus 232 i~vig~D~ 239 (305)
T 3huu_A 232 IQTATFNT 239 (305)
T ss_dssp CEEEEESC
T ss_pred eEEEEECC
Confidence 45555443
No 129
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=97.82 E-value=0.00063 Score=65.94 Aligned_cols=203 Identities=13% Similarity=0.073 Sum_probs=130.3
Q ss_pred CCeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhH
Q 006683 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (635)
Q Consensus 32 ~~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (635)
+..-+||+++|.. ..+......+++.+.++. |+.+ +.+.++..++..-.+....++ ..++.+||-..
T Consensus 8 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~-~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~----- 75 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKE-----GYTA-LISFSTNSDVKKYQNAIINFE-NNNVDGIITSA----- 75 (277)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCEE-EEEECSSCCHHHHHHHHHHHH-HTTCSEEEEEC-----
T ss_pred CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHC-----CCCE-EEEEeCCCChHHHHHHHHHHH-hCCCCEEEEcc-----
Confidence 4567999999975 334455566666665553 3440 455677777776666666666 67887766432
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHH
Q 006683 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (635)
Q Consensus 111 ~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~ 190 (635)
.....+...++|+|..... + ..+ +.+ .+..+....+...+++|. .|.++++++.............+.++
T Consensus 76 -~~~~~~~~~~iPvV~~~~~--~--~~~---~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf~ 145 (277)
T 3hs3_A 76 -FTIPPNFHLNTPLVMYDSA--N--IND---DIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEAMT 145 (277)
T ss_dssp -CCCCTTCCCSSCEEEESCC--C--CCS---SSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHHHH
T ss_pred -hHHHHHHhCCCCEEEEccc--c--cCC---CCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHHHH
Confidence 1223456779999987532 1 222 234 678888888888899888 99999999986643210034567788
Q ss_pred HHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhh--cCceEEEEecCChhHHHHHHHHHHHcCCCC-CCeEEEee
Q 006683 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSVWIVT 267 (635)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~--~~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~~i~~ 267 (635)
+.+++.| +.+... ...... + .+.++++.+ .++++|++ .+...+..+++++++.|+.- .+...++.
T Consensus 146 ~~l~~~g-~~~~~~-~~~~~~------~--~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~vP~di~vig~ 213 (277)
T 3hs3_A 146 AEASKLK-IDYLLE-ETPENN------P--YISAQSALNKSNQFDAIIT--VNDLYAAEIIKEAKRRNLKIPDDFQLVGY 213 (277)
T ss_dssp HHHHHTT-CEEEEE-ECCSSC------H--HHHHHHHHHTGGGCSEEEC--SSHHHHHHHHHHHHHTTCCTTTTCEEECS
T ss_pred HHHHHCC-CCCCCC-CccCCc------h--HHHHHHHHcCCCCCCEEEE--CCHHHHHHHHHHHHHcCCCCCCceEEEee
Confidence 8999999 877654 332221 2 333444433 36788764 66777888999999999863 34444444
Q ss_pred C
Q 006683 268 N 268 (635)
Q Consensus 268 ~ 268 (635)
+
T Consensus 214 d 214 (277)
T 3hs3_A 214 D 214 (277)
T ss_dssp B
T ss_pred C
Confidence 3
No 130
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=97.82 E-value=9e-06 Score=75.17 Aligned_cols=76 Identities=14% Similarity=0.097 Sum_probs=66.6
Q ss_pred cccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccEEEeccccccc------ccccccccccceeeeeEE
Q 006683 486 RYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGN------RTEYVEFTQPYAESGFSM 559 (635)
Q Consensus 486 ~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~------r~~~~~fs~p~~~~~~~~ 559 (635)
+|+|+..-|.+.+. |+++++..+. .|++.++.|.+|++|+++++++.+++ |+..++|+.||+.+...+
T Consensus 29 ~yeGlatgl~~~f~---gi~~~i~~mr---g~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~yYv~~h~l 102 (231)
T 2ozz_A 29 LYEGLASGLKAQFD---GIPFYYAHMR---GADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHTYVGEHQL 102 (231)
T ss_dssp HHHHHHHHHHHTTT---TSCEEEEECS---CHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTSSSCCEEE
T ss_pred hhhHHHHHHHHHhc---CCcEEEEEcc---ChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCCccccCeEE
Confidence 89999998888884 8886666663 39999999999999999999999999 999999999999888889
Q ss_pred EEeCCCCC
Q 006683 560 IVPAKQEE 567 (635)
Q Consensus 560 ~v~~~~~~ 567 (635)
++++++..
T Consensus 103 i~~~~~~~ 110 (231)
T 2ozz_A 103 ICRKGESG 110 (231)
T ss_dssp EEETTCGG
T ss_pred EEeCCCcc
Confidence 98888633
No 131
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=97.81 E-value=0.00033 Score=68.66 Aligned_cols=213 Identities=10% Similarity=0.075 Sum_probs=126.3
Q ss_pred CCeEEEEEEeeC-----CCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCC
Q 006683 32 EEVTKIGAIVDA-----NSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMET 106 (635)
Q Consensus 32 ~~~i~IG~i~p~-----s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~ 106 (635)
+..-+||+++|. +..+...+..+++.+.++. |+.+.+...+.... .....+++...++.+||-...
T Consensus 4 ~~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~~~~~~~~----~~~~~~~l~~~~vdGiIi~~~ 74 (294)
T 3qk7_A 4 GRTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKR-----GLDLLLIPDEPGEK----YQSLIHLVETRRVDALIVAHT 74 (294)
T ss_dssp -CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHT-----TCEEEEEEECTTCC----CHHHHHHHHHTCCSEEEECSC
T ss_pred CccceEEEEecCCCccccChhHHHHHHHHHHHHHHC-----CCEEEEEeCCChhh----HHHHHHHHHcCCCCEEEEeCC
Confidence 355789999993 2333445556665555543 46666655443212 123344443677876664332
Q ss_pred hhhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchH
Q 006683 107 WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKL 186 (635)
Q Consensus 107 s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~ 186 (635)
.... .....+...++|+|..... . .... +-.+..++...+..++++|...|-+++++|.............
T Consensus 75 ~~~~-~~~~~l~~~~iPvV~~~~~--~---~~~~---~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~ 145 (294)
T 3qk7_A 75 QPED-FRLQYLQKQNFPFLALGRS--H---LPKP---YAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRL 145 (294)
T ss_dssp CSSC-HHHHHHHHTTCCEEEESCC--C---CSSC---CEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHH
T ss_pred CCCh-HHHHHHHhCCCCEEEECCC--C---CCCC---CCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHH
Confidence 2222 3345566789999987643 1 1222 2346778888888899999888999999998775421003456
Q ss_pred HHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCCCC-CCeE
Q 006683 187 ALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSV 263 (635)
Q Consensus 187 ~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~ 263 (635)
+.+++.+++.| +.+.....+.... + ...-...++++.+. .+++|++ .+...+..+++++++.|+.- .+..
T Consensus 146 ~Gf~~al~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~~~~~ai~~--~nd~~A~g~~~al~~~G~~vP~di~ 218 (294)
T 3qk7_A 146 QGYVQTMSEAG-LMPLAGYLQKADP---T-RPGGYLAASRLLALEVPPTAIIT--DCNMLGDGVASALDKAGLLGGEGIS 218 (294)
T ss_dssp HHHHHHHHTTT-CCCCTTCEEEECS---S-HHHHHHHHHHHHHSSSCCSEEEE--SSHHHHHHHHHHHHHTTCSSTTSCE
T ss_pred HHHHHHHHHCC-CCCChhHeecCCC---C-HHHHHHHHHHHHcCCCCCcEEEE--CCHHHHHHHHHHHHHcCCCCCCceE
Confidence 77888999988 6542111111111 1 12333444444433 6788875 66777888999999999863 3444
Q ss_pred EEeeCc
Q 006683 264 WIVTNT 269 (635)
Q Consensus 264 ~i~~~~ 269 (635)
.++.+.
T Consensus 219 vig~D~ 224 (294)
T 3qk7_A 219 LIAYDG 224 (294)
T ss_dssp EEEETC
T ss_pred EEeecC
Confidence 555443
No 132
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=97.79 E-value=0.00058 Score=68.55 Aligned_cols=211 Identities=9% Similarity=0.039 Sum_probs=130.7
Q ss_pred CCeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhH
Q 006683 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (635)
Q Consensus 32 ~~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (635)
+..-+||+++|.. ..+...+..+++.+.++ . |+.+ .+.++..++..-.+....++ ..++.+||-.......
T Consensus 66 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~---~--g~~~--~~~~~~~~~~~~~~~i~~l~-~~~vdGiIi~~~~~~~ 137 (344)
T 3kjx_A 66 NRVNLVAVIIPSLSNMVFPEVLTGINQVLED---T--ELQP--VVGVTDYLPEKEEKVLYEML-SWRPSGVIIAGLEHSE 137 (344)
T ss_dssp SCCSEEEEEESCSSSSSHHHHHHHHHHHHTS---S--SSEE--EEEECTTCHHHHHHHHHHHH-TTCCSEEEEECSCCCH
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHHHHH---C--CCEE--EEEeCCCCHHHHHHHHHHHH-hCCCCEEEEECCCCCH
Confidence 4567899999965 34444555555554433 2 4555 45566677777666677777 6777766643222222
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcC--C-CCCCcchHH
Q 006683 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN--V-YGGDSGKLA 187 (635)
Q Consensus 111 ~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~--~-~g~~~~~~~ 187 (635)
.....+...++|+|..... .. . +....+..++...+..++++|...|.+++++|.... . .. ....+
T Consensus 138 -~~~~~l~~~~iPvV~i~~~--~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~--~~R~~ 206 (344)
T 3kjx_A 138 -AARAMLDAAGIPVVEIMDS--DG---K---PVDAMVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRA--RKRFE 206 (344)
T ss_dssp -HHHHHHHHCSSCEEEEEEC--SS---C---CSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHH--HHHHH
T ss_pred -HHHHHHHhCCCCEEEEeCC--CC---C---CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccCccH--HHHHH
Confidence 3445566789999987423 11 1 122356778888888899999888999999998764 2 22 34567
Q ss_pred HHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhh-c-CceEEEEecCChhHHHHHHHHHHHcCCCC-CCeEE
Q 006683 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-K-QSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSVW 264 (635)
Q Consensus 188 ~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~-~-~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~~ 264 (635)
.+++.+++.| +.+.....+.... + ...-...++++.+ . .+++|++ .+...+..+++++++.|+.- .+...
T Consensus 207 Gf~~al~~~g-~~~~~~~~~~~~~---~-~~~~~~~~~~ll~~~~~~~ai~~--~nd~~A~g~~~al~~~g~~vP~disv 279 (344)
T 3kjx_A 207 GFTEVLGKNG-VEIEDREFYSGGS---A-LAKGREMTQAMLERSPDLDFLYY--SNDMIAAGGLLYLLEQGIDIPGQIGL 279 (344)
T ss_dssp HHHHHHHHTT-CCCSCEEECSSCC---C-HHHHHHHHHHHHHHSTTCCEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHHHcC-CCCChheEEeCCC---C-HHHHHHHHHHHHhcCCCCCEEEE--CCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 7889999998 7654333222221 1 1222334444432 2 6888875 56677888999999999864 33444
Q ss_pred EeeC
Q 006683 265 IVTN 268 (635)
Q Consensus 265 i~~~ 268 (635)
++.+
T Consensus 280 vg~D 283 (344)
T 3kjx_A 280 AGFN 283 (344)
T ss_dssp ECSB
T ss_pred EEEC
Confidence 4433
No 133
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=97.79 E-value=0.0012 Score=66.20 Aligned_cols=210 Identities=10% Similarity=0.058 Sum_probs=130.2
Q ss_pred CCeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhH
Q 006683 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (635)
Q Consensus 32 ~~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (635)
+..-+||+++|.. ..+...+..+++.+.++. |+.+ .+.++..++..-.+....++ ..++.+||-......
T Consensus 60 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~--~~~~~~~~~~~~~~~~~~l~-~~~vdGiIi~~~~~~- 130 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVFLETLTGIETVLDAA-----GYQM--LIGNSHYDAGQELQLLRAYL-QHRPDGVLITGLSHA- 130 (339)
T ss_dssp ---CEEEEEESCSTTCTTHHHHHHHHHHHHHT-----TCEE--EEEECTTCHHHHHHHHHHHH-TTCCSEEEEECSCCC-
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHC-----CCEE--EEEeCCCChHHHHHHHHHHH-cCCCCEEEEeCCCCC-
Confidence 3456899999965 445567777877777663 3444 45667777777666677776 677876653222111
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCC-CCCCcchHHHH
Q 006683 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV-YGGDSGKLALL 189 (635)
Q Consensus 111 ~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~-~g~~~~~~~~~ 189 (635)
......+...++|+|..... .. . +.. .+..++...+..++++|...|.+++++|..... .. ....+.+
T Consensus 131 ~~~~~~l~~~~iPvV~~~~~--~~---~---~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~--~~R~~Gf 199 (339)
T 3h5o_A 131 EPFERILSQHALPVVYMMDL--AD---D---GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERV--MKRLDGY 199 (339)
T ss_dssp TTHHHHHHHTTCCEEEEESC--CS---S---SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHH--HHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEeec--CC---C---CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeCCCCccH--HHHHHHH
Confidence 13445566789999987533 11 1 122 577888888888999998889999999987643 22 3446678
Q ss_pred HHHHhccCCeEEE-EEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCCCCC-CeEEE
Q 006683 190 AEALQNVSSSEIQ-SRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK-DSVWI 265 (635)
Q Consensus 190 ~~~l~~~g~~~v~-~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~~~-~~~~i 265 (635)
++.+++.| +... ......... + ...-...++++.+. .+++|++ .+...+..+++++++.|+.-+ +...+
T Consensus 200 ~~al~~~g-~~~~~~~~~~~~~~---~-~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~al~~~G~~vP~disvv 272 (339)
T 3h5o_A 200 RAALDAAD-CRDAGLEWLDPQPS---S-MQMGADMLDRALAERPDCDALFC--CNDDLAIGALARSQQLGIAVPERLAIA 272 (339)
T ss_dssp HHHHHHTT-CCCGGGEEEECSCC---C-HHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHCC-CCCCChheEecCCC---C-HHHHHHHHHHHHcCCCCCcEEEE--CChHHHHHHHHHHHHcCCCCCCCEEEE
Confidence 88898888 6211 111111111 1 12333444444433 6788876 666778889999999998633 34444
Q ss_pred eeC
Q 006683 266 VTN 268 (635)
Q Consensus 266 ~~~ 268 (635)
+.+
T Consensus 273 gfD 275 (339)
T 3h5o_A 273 GFN 275 (339)
T ss_dssp CSB
T ss_pred EEC
Confidence 443
No 134
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=97.78 E-value=0.0031 Score=61.39 Aligned_cols=213 Identities=9% Similarity=0.016 Sum_probs=126.7
Q ss_pred EEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEec--CCCCHHHHHHHHHHHhhcCCeEEEEc-CCChhhH
Q 006683 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRD--HNRDPFQAATAAQELINKEKVKVIAG-METWEET 110 (635)
Q Consensus 35 i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D--~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~ 110 (635)
.+||++.|.. ..+...+..+++.+.++.+ +.+. +.+ +..++..-.+....++ ..++.+||- +......
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g-----~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~vdgiIi~~~~~~~~ 73 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLG-----VSVD--IFASPSEGDFQSQLQLFEDLS-NKNYKGIAFAPLSSVNL 73 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHT-----CCEE--EEECSSTTCHHHHHHHHHHHH-TSSEEEEEECCSSSSTT
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcC-----CEEE--EeCCCCCCCHHHHHHHHHHHH-HcCCCEEEEeCCChHHH
Confidence 3699999864 3444456666666666544 3443 445 5667766566666777 678987764 3332221
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCCC----CCCCceEEEEecCcHHHHHHHHHHHHHC-C--CeEEEEEEEcCCCCCCc
Q 006683 111 AVVAEIASRVQVPILSFAAPAVTPLSM----SRRWPYLIRMASNDSEQMKCIADLARKY-N--WRRVAAIYEDNVYGGDS 183 (635)
Q Consensus 111 ~~v~~~~~~~~ip~Is~~~~~~~~~l~----~~~~p~~~r~~p~~~~~~~al~~~l~~~-~--w~~vaii~~~~~~g~~~ 183 (635)
......+...++|+|..... .+... ...+ .-.+..++...+...+++|... | -++|++|..........
T Consensus 74 ~~~~~~~~~~~iPvV~~~~~--~~~~~~~~~~~~~--~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~ 149 (288)
T 1gud_A 74 VMPVARAWKKGIYLVNLDEK--IDMDNLKKAGGNV--EAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGE 149 (288)
T ss_dssp HHHHHHHHHTTCEEEEESSC--CCHHHHHHTTCCC--SEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHH
T ss_pred HHHHHHHHHCCCeEEEECCC--CCcccccccCCce--eEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHh
Confidence 22234445579999987643 11100 0012 0246678777888888888665 8 89999998654321002
Q ss_pred chHHHHHHHHhcc-CCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCCCCC
Q 006683 184 GKLALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVGK 260 (635)
Q Consensus 184 ~~~~~~~~~l~~~-g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~~~ 260 (635)
...+.+++.+++. | +++.... .... + ...-...++++.+. .+++|++ .+...+..+++++++.|+. .
T Consensus 150 ~R~~Gf~~al~~~~g-~~~~~~~--~~~~---~-~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~al~~~G~~-~ 219 (288)
T 1gud_A 150 ARRNGATEAFKKASQ-IKLVASQ--PADW---D-RIKALDVATNVLQRNPNIKAIYC--ANDTMAMGVAQAVANAGKT-G 219 (288)
T ss_dssp HHHHHHHHHHHTCTT-EEEEEEE--ECTT---C-HHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHHTTCT-T
T ss_pred HHHHHHHHHHHhCCC-cEEEEee--cCCc---c-HHHHHHHHHHHHHhCCCceEEEE--CCCchHHHHHHHHHhcCCC-C
Confidence 3456788888887 8 7765432 1111 1 12233444444332 5788876 5666788899999999985 4
Q ss_pred CeEEEeeCc
Q 006683 261 DSVWIVTNT 269 (635)
Q Consensus 261 ~~~~i~~~~ 269 (635)
+...++.+.
T Consensus 220 dv~vvGfD~ 228 (288)
T 1gud_A 220 KVLVVGTDG 228 (288)
T ss_dssp TSEEEEESC
T ss_pred CeEEEEeCC
Confidence 455565554
No 135
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=97.77 E-value=0.0019 Score=65.04 Aligned_cols=214 Identities=8% Similarity=0.074 Sum_probs=128.9
Q ss_pred CCeEEEEEEeeCCC-cCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhH
Q 006683 32 EEVTKIGAIVDANS-QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (635)
Q Consensus 32 ~~~i~IG~i~p~s~-~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (635)
+..-+||+++|... .+...+..+++.+.++. |+.+ .+.++..++....+....++ ..++.+||-......
T Consensus 68 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~--~~~~~~~~~~~~~~~~~~l~-~~~vdGiI~~~~~~~- 138 (355)
T 3e3m_A 68 KRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQG-----GLQL--LLGYTAYSPEREEQLVETML-RRRPEAMVLSYDGHT- 138 (355)
T ss_dssp ---CEEEEEESCSBCHHHHHHHHHHHHHHHHT-----TCEE--EEEECTTCHHHHHHHHHHHH-HTCCSEEEEECSCCC-
T ss_pred CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHC-----CCEE--EEEeCCCChHHHHHHHHHHH-hCCCCEEEEeCCCCC-
Confidence 34568999999653 33345555655555543 3444 44566667766666666666 677776654322222
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCC-CcchHHHH
Q 006683 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGG-DSGKLALL 189 (635)
Q Consensus 111 ~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~-~~~~~~~~ 189 (635)
......+...++|+|..... + .. +....+..++...+..++++|...|.+++++|........ .....+.+
T Consensus 139 ~~~~~~l~~~~iPvV~i~~~---~--~~---~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf 210 (355)
T 3e3m_A 139 EQTIRLLQRASIPIVEIWEK---P--AH---PIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGF 210 (355)
T ss_dssp HHHHHHHHHCCSCEEEESSC---C--SS---CSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEECCc---c--CC---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHH
Confidence 23345566789999987432 1 11 1223567888888888999998899999999998654320 03456789
Q ss_pred HHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhh--cCceEEEEecCChhHHHHHHHHHHHcCCCC-CCeEEEe
Q 006683 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSVWIV 266 (635)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~--~~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~~i~ 266 (635)
++.+++.| +.+.....+..... + ..+-...++++.+ ..+++|++ .+...+..+++++++.|+.- .+...++
T Consensus 211 ~~al~~~g-~~~~~~~~~~~~~~--~-~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~al~~~G~~vP~disvig 284 (355)
T 3e3m_A 211 KRAMREAG-LNPDQEIRLGAPPL--S-IEDGVAAAELILQEYPDTDCIFC--VSDMPAFGLLSRLKSIGVAVPEQVSVVG 284 (355)
T ss_dssp HHHHHHTT-SCSCCEEEESCSSC--C-HHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHHHHHHHHHTCCTTTTCEEEC
T ss_pred HHHHHHCC-cCCCccEEEecCCC--C-HHHHHHHHHHHHcCCCCCcEEEE--CChHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 99999998 76442222221110 1 1223334444433 36788775 66677888999999999863 3444444
Q ss_pred eC
Q 006683 267 TN 268 (635)
Q Consensus 267 ~~ 268 (635)
.+
T Consensus 285 fD 286 (355)
T 3e3m_A 285 FG 286 (355)
T ss_dssp SS
T ss_pred EC
Confidence 43
No 136
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=97.71 E-value=0.0011 Score=66.56 Aligned_cols=209 Identities=18% Similarity=0.119 Sum_probs=123.2
Q ss_pred CeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHH
Q 006683 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETA 111 (635)
Q Consensus 33 ~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~ 111 (635)
..-+||+++|.. ..+...+..+++.+.++. |+.+. +.++..++....+....++ ..++++||-.......
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~--~~~~~~~~~~~~~~~~~l~-~~~vdgiI~~~~~~~~- 135 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASKA-----GLATI--ITNSNEDATTMSGSLEFLT-SHGVDGIICVPNEECA- 135 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHHT-----TCCEE--EEECTTCHHHHHHHHHHHH-HTTCSCEEECCCGGGH-
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc-----CCEEE--EEeCCCCHHHHHHHHHHHH-hCCCCEEEEeCCCCCh-
Confidence 457899999864 334445666666665543 34444 4555667666555666666 6788876653333222
Q ss_pred HHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCC--CCCCcchHHHH
Q 006683 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLALL 189 (635)
Q Consensus 112 ~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~--~g~~~~~~~~~ 189 (635)
.....+...++|+|..... .+. ....+ .+..++...+..++++|...|.++|++|..... .. ....+.+
T Consensus 136 ~~~~~l~~~~iPvV~i~~~--~~~--~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~--~~R~~Gf 206 (348)
T 3bil_A 136 NQLEDLQKQGMPVVLVDRE--LPG--DSTIP---TATSNPQPGIAAAVELLAHNNALPIGYLSGPMDTSTG--RERLEDF 206 (348)
T ss_dssp HHHHHHHHC-CCEEEESSC--CSC--C-CCC---EEEEECHHHHHHHHHHHHHTTCCSEEEECCCTTSHHH--HHHHHHH
T ss_pred HHHHHHHhCCCCEEEEccc--CCC--CCCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccH--HHHHHHH
Confidence 3334455679999987644 221 01222 356777778888899998889999999986533 22 3446778
Q ss_pred HHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc-CceEEEEecCChhHHHHHHHHHHHcCCCC-CCeEEEee
Q 006683 190 AEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-QSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSVWIVT 267 (635)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~-~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~~i~~ 267 (635)
++.+++.| +..... +.... + ..+-...++++.+. .+ +|+ +.+...+..+++++++.|+.- .+...++.
T Consensus 207 ~~al~~~g-~~~~~v--~~~~~---~-~~~~~~~~~~ll~~~~~-ai~--~~nD~~A~g~~~al~~~G~~vP~disvvG~ 276 (348)
T 3bil_A 207 KAACANSK-IGEQLV--FLGGY---E-QSVGFEGATKLLDQGAK-TLF--AGDSMMTIGVIEACHKAGLVIGKDVSVIGF 276 (348)
T ss_dssp HHHHHHTT-CCCCEE--ECCCS---S-HHHHHHHHHHHHHTTCS-EEE--ESSHHHHHHHHHHHHHTTCCBTTTBEEEEE
T ss_pred HHHHHHcC-cCccEE--EcCCC---C-HHHHHHHHHHHHcCCCC-EEE--EcChHHHHHHHHHHHHcCCCCCCCeEEEEe
Confidence 88899888 632211 11111 1 12333445555443 35 555 466667888999999999853 34444544
Q ss_pred Cc
Q 006683 268 NT 269 (635)
Q Consensus 268 ~~ 269 (635)
+.
T Consensus 277 D~ 278 (348)
T 3bil_A 277 DT 278 (348)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 137
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=97.66 E-value=0.0016 Score=64.91 Aligned_cols=204 Identities=12% Similarity=0.128 Sum_probs=126.5
Q ss_pred CCeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhH
Q 006683 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (635)
Q Consensus 32 ~~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (635)
+..-+||+++|.. ..+...+..+++.+.++.+ +.+. +.++.. +....+....++ ..++++||-...
T Consensus 62 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g-----~~~~--~~~~~~-~~~~~~~~~~l~-~~~vdGiIi~~~---- 128 (333)
T 3jvd_A 62 HRSALVGVIVPDLSNEYYSESLQTIQQDLKAAG-----YQML--VAEANS-VQAQDVVMESLI-SIQAAGIIHVPV---- 128 (333)
T ss_dssp --CCEEEEEESCSSSHHHHHHHHHHHHHHHHHT-----CEEE--EEECCS-HHHHHHHHHHHH-HHTCSEEEECCC----
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCC-----CEEE--EECCCC-hHHHHHHHHHHH-hCCCCEEEEcch----
Confidence 3457899999974 3444566677777766653 4444 445544 554455555565 678887775333
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHH
Q 006683 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLA 190 (635)
Q Consensus 111 ~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~ 190 (635)
...+...++|+|..... .+ ....+ .+..++...+..++++|...|-+++++|.............+.++
T Consensus 129 ---~~~~~~~~iPvV~~~~~--~~---~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 197 (333)
T 3jvd_A 129 ---VGSIAPEGIPMVQLTRG--EL---GPGFP---RVLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGIS 197 (333)
T ss_dssp ---TTCCC-CCSCEEEECC---------CCSC---EEEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHH
T ss_pred ---HHHHhhCCCCEEEECcc--CC---CCCCC---EEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHH
Confidence 34566789999988654 22 12223 356788888888999998889999999987643210034567788
Q ss_pred HHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc-CceEEEEecCChhHHHHHHHHHHHcCCCC-CCeEEEeeC
Q 006683 191 EALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-QSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSVWIVTN 268 (635)
Q Consensus 191 ~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~-~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~~i~~~ 268 (635)
+.+++.| +. ......... ..+....++++.+. .+++|++ .+...+..+++++++.|+.- .+...++.+
T Consensus 198 ~al~~~g-~~--~~~~~~~~~-----~~~~~~~~~~ll~~~~~~ai~~--~nd~~A~g~~~al~~~G~~vP~disvig~D 267 (333)
T 3jvd_A 198 HAASIYG-AE--VTFHFGHYS-----VESGEEMAQVVFNNGLPDALIV--ASPRLMAGVMRAFTRLNVRVPHDVVIGGYD 267 (333)
T ss_dssp HHHHHTT-CE--EEEEECCSS-----HHHHHHHHHHHHHTCCCSEEEE--CCHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred HHHHHCC-CC--EEEecCCCC-----HHHHHHHHHHHhcCCCCcEEEE--CCHHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 9999999 77 111111111 13334445555443 3788876 66677888999999999863 345555544
Q ss_pred c
Q 006683 269 T 269 (635)
Q Consensus 269 ~ 269 (635)
.
T Consensus 268 ~ 268 (333)
T 3jvd_A 268 D 268 (333)
T ss_dssp C
T ss_pred C
Confidence 3
No 138
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=97.65 E-value=0.0016 Score=64.86 Aligned_cols=207 Identities=8% Similarity=-0.005 Sum_probs=126.9
Q ss_pred eEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEc-CCChhhHH
Q 006683 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETA 111 (635)
Q Consensus 34 ~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~ 111 (635)
..+||+++|.. ..+...+..+++.+.++. |++ +.+.++..++..-.+.+..++ ..++.+||- |.......
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~--~~~~~~~~~~~~~~~~i~~~~-~~~vdgiIi~~~~~~~~~ 74 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEA-----GYK--TDLQYADDDIPNQLSQIENMV-TKGVKVLVIASIDGTTLS 74 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHT-----TCE--EEEEECTTCHHHHHHHHHHHH-HHTCSEEEECCSSGGGGH
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHc-----CCE--EEEeeCCCCHHHHHHHHHHHH-HcCCCEEEEEcCCchhHH
Confidence 46899999975 444556667777776664 344 445567788888788888888 567876664 44443445
Q ss_pred HHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHH-------CCCeEEEEEEEcCCCCCCcc
Q 006683 112 VVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK-------YNWRRVAAIYEDNVYGGDSG 184 (635)
Q Consensus 112 ~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~-------~~w~~vaii~~~~~~g~~~~ 184 (635)
.....+...++|+|..... .+.. . +....+..+....+..++++|.. .|.++++++...........
T Consensus 75 ~~~~~~~~~giPvV~~~~~--~~~~--~--~~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~~ 148 (330)
T 3uug_A 75 DVLKQAGEQGIKVIAYDRL--IRNS--G--DVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAFF 148 (330)
T ss_dssp HHHHHHHHTTCEEEEESSC--CCSC--T--TCCEEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHHH
T ss_pred HHHHHHHHCCCCEEEECCC--CCCC--C--ceeEEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHHH
Confidence 5566677889999988755 2221 1 12234667888888888888866 68889999975443210033
Q ss_pred hHHHHHHHHhcc---CCeEEEEEee----eCCCCCCCCchHHHHHHHHhhhh-----cCceEEEEecCChhHHHHHHHHH
Q 006683 185 KLALLAEALQNV---SSSEIQSRLV----LPPISSISDPKEAVRGELKKVQD-----KQSRVFIVLQASLDMTIHLFTEA 252 (635)
Q Consensus 185 ~~~~~~~~l~~~---g~~~v~~~~~----~~~~~~~~d~~~~~~~~l~~l~~-----~~~~vii~~~~~~~~~~~~l~~a 252 (635)
..+.+++.+++. |.+.+..... +..... + ...-...++++.+ ..+++|++ .+...+..+++++
T Consensus 149 R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~ai~~--~nd~~A~g~~~al 223 (330)
T 3uug_A 149 FYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLRW--D-PATAQARMDNLLSAYYTDAKVDAVLS--PYDGLSIGIISSL 223 (330)
T ss_dssp HHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGGG--C-HHHHHHHHHHHHHHHCSSSCCCEEEC--SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCceEEeecccccccccCCCC--C-HHHHHHHHHHHHHhcCCCCCeEEEEE--CCCchHHHHHHHH
Confidence 456677777765 3144321100 000110 1 1222333333333 46787764 6777888999999
Q ss_pred HHcCCCC
Q 006683 253 NRMGLVG 259 (635)
Q Consensus 253 ~~~g~~~ 259 (635)
++.|+..
T Consensus 224 ~~~g~~v 230 (330)
T 3uug_A 224 KGVGYGT 230 (330)
T ss_dssp HHTTCSS
T ss_pred HHcCCCC
Confidence 9999864
No 139
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=97.62 E-value=0.0044 Score=61.26 Aligned_cols=210 Identities=16% Similarity=0.118 Sum_probs=115.7
Q ss_pred CeEEEEEEee---CCC-cCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChh
Q 006683 33 EVTKIGAIVD---ANS-QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (635)
Q Consensus 33 ~~i~IG~i~p---~s~-~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (635)
++.+||+++| .+. .+......|++.+.++. |+++.+ .++..+.. ..+.+..++ +.++.+||......
T Consensus 3 ~~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~-----g~~~~~--~~~~~~~~-~~~~l~~l~-~~~~dgIi~~~~~~ 73 (318)
T 2fqx_A 3 GDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQEN-----NAKCKY--VTASTDAE-YVPSLSAFA-DENMGLVVACGSFL 73 (318)
T ss_dssp CCCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHT-----TCEEEE--EECCSGGG-HHHHHHHHH-HTTCSEEEEESTTT
T ss_pred CCcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHh-----CCeEEE--EeCCCHHH-HHHHHHHHH-HcCCCEEEECChhH
Confidence 4579999998 222 34455566666666554 344443 33332222 234566666 67788777643221
Q ss_pred hHHHHHHhhcc-CCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHH----HHHHHHCCC-eEEEEEEEcCC-CCC
Q 006683 109 ETAVVAEIASR-VQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCI----ADLARKYNW-RRVAAIYEDNV-YGG 181 (635)
Q Consensus 109 ~~~~v~~~~~~-~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al----~~~l~~~~w-~~vaii~~~~~-~g~ 181 (635)
...+..++.. -++|++..... .+. . +.+-....+. .++..+ +.++...|. ++|++|..... ..
T Consensus 74 -~~~~~~~a~~~p~~p~v~id~~--~~~--~---~~~~~v~~d~-~~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~~- 143 (318)
T 2fqx_A 74 -VEAVIETSARFPKQKFLVIDAV--VQD--R---DNVVSAVFGQ-NEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMM- 143 (318)
T ss_dssp -HHHHHHHHHHCTTSCEEEESSC--CCS--C---TTEEEEEECH-HHHHHHHHHHHHHHHHHTTCCEEEEEESCCSTTT-
T ss_pred -HHHHHHHHHHCCCCEEEEEcCc--cCC--C---CCEEEEEech-HHHHHHHHHHHHHHhccCCCcEEEEEeCcccHHH-
Confidence 2224444444 38999876543 110 1 2233333443 334333 466666676 89999976532 23
Q ss_pred CcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCCCC
Q 006683 182 DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVGKD 261 (635)
Q Consensus 182 ~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~~~ 261 (635)
....+.+++.+++.| ..+.....+.... .+. ..-.+..+++.+.++++|+. .....+..+++++++.|+.+.+
T Consensus 144 -~~r~~Gf~~~~~~~~-~~~~~~~~~~~~~--~~~-~~g~~~a~~ll~~~~daI~~--~~d~~a~Gv~~a~~e~g~~P~d 216 (318)
T 2fqx_A 144 -PLFEAGFEAGVKAVD-PDIQVVVEVANTF--SDP-QKGQALAAKLYDSGVNVIFQ--VAGGTGNGVIKEARDRRLNGQD 216 (318)
T ss_dssp -HHHHHHHHHHHHHHC-TTCEEEEEECSCS--SCH-HHHHHHHHHHHHTTCCEEEE--ECGGGHHHHHHHHHHHHHTTCC
T ss_pred -HHHHHHHHHHHHHHC-CCCEEEEEEccCc--cCH-HHHHHHHHHHHHCCCcEEEE--CCCCCchHHHHHHHhhhhccCC
Confidence 455677888888877 5443322232211 111 22334555665667998876 4455677788889888776333
Q ss_pred eEEEeeC
Q 006683 262 SVWIVTN 268 (635)
Q Consensus 262 ~~~i~~~ 268 (635)
...|+.+
T Consensus 217 v~viG~D 223 (318)
T 2fqx_A 217 VWVIGVD 223 (318)
T ss_dssp CEEEEEE
T ss_pred cEEEEEe
Confidence 3334443
No 140
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=97.61 E-value=0.0014 Score=63.41 Aligned_cols=191 Identities=9% Similarity=0.049 Sum_probs=115.1
Q ss_pred CCeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhH
Q 006683 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (635)
Q Consensus 32 ~~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (635)
+...+||+++|.. ..+......+++.+.++. |+.+.+. ++..++.... ++ ++.+||-.......
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~~--~~~~~~~~~~----~~----~vdgiI~~~~~~~~ 70 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLALF-----DYEMIVC--SGKKSHLFIP----EK----MVDGAIILDWTFPT 70 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHTT-----TCEEEEE--ESTTTTTCCC----TT----TCSEEEEECTTSCH
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHHC-----CCeEEEE--eCCCCHHHHh----hc----cccEEEEecCCCCH
Confidence 3567899999864 444455666666665542 4555543 3332321100 01 56655532222112
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCC--CCCcchHHH
Q 006683 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVY--GGDSGKLAL 188 (635)
Q Consensus 111 ~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~--g~~~~~~~~ 188 (635)
..+ ..+...++|+|..... .+ . +.+..+..++...+..++++|...|.+++++|..+... . ....+.
T Consensus 71 ~~~-~~l~~~~iPvV~~~~~--~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~--~~R~~g 139 (277)
T 3cs3_A 71 KEI-EKFAERGHSIVVLDRT--TE---H---RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDS--QERLAV 139 (277)
T ss_dssp HHH-HHHHHTTCEEEESSSC--CC---S---TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHH--HHHHHH
T ss_pred HHH-HHHHhcCCCEEEEecC--CC---C---CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCccH--HHHHHH
Confidence 223 3445589999987644 22 1 22455777888888888999988899999999866432 2 344677
Q ss_pred HHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc---CceEEEEecCChhHHHHHHHHHHHcCCC
Q 006683 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK---QSRVFIVLQASLDMTIHLFTEANRMGLV 258 (635)
Q Consensus 189 ~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~---~~~vii~~~~~~~~~~~~l~~a~~~g~~ 258 (635)
+++.+++.| +.+. . +.... + ..+-...++++.+. .+++|++ .+...+..+++++++.|+.
T Consensus 140 f~~~l~~~g-~~~~-~--~~~~~---~-~~~~~~~~~~~l~~~~~~~~ai~~--~~d~~a~g~~~al~~~g~~ 202 (277)
T 3cs3_A 140 STRELTRFG-IPYE-I--IQGDF---T-EPSGYAAAKKILSQPQTEPVDVFA--FNDEMAIGVYKYVAETNYQ 202 (277)
T ss_dssp HHHHHHHTT-CCEE-E--EECCS---S-HHHHHHHHHHHTTSCCCSSEEEEE--SSHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHcC-CCee-E--EeCCC---C-hhHHHHHHHHHHhcCCCCCcEEEE--cChHHHHHHHHHHHHcCCC
Confidence 888899999 7765 2 11111 1 13334455555443 5788775 5666788899999999985
No 141
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=97.58 E-value=0.00024 Score=69.81 Aligned_cols=204 Identities=10% Similarity=0.126 Sum_probs=126.3
Q ss_pred CCeEEEEEEeeCCC-cCcH-HHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhh
Q 006683 32 EEVTKIGAIVDANS-QMGK-QAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (635)
Q Consensus 32 ~~~i~IG~i~p~s~-~~g~-~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (635)
+..-+||+++|... .+.. .+..+++.+.++. |+.+ .+.++..++....+....++ ..++.+||-......
T Consensus 11 ~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~-----g~~~--~~~~~~~~~~~~~~~~~~l~-~~~vdGiIi~~~~~~ 82 (301)
T 3miz_A 11 SRSNTFGIITDYVSTTPYSVDIVRGIQDWANAN-----GKTI--LIANTGGSSEREVEIWKMFQ-SHRIDGVLYVTMYRR 82 (301)
T ss_dssp -CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHT-----TCEE--EEEECTTCHHHHHHHHHHHH-HTTCSEEEEEEEEEE
T ss_pred CCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHC-----CCEE--EEEeCCCChHHHHHHHHHHH-hCCCCEEEEecCCcc
Confidence 35678999999763 3344 7778887777764 3444 45566667766666666666 677876664222211
Q ss_pred HHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHH
Q 006683 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALL 189 (635)
Q Consensus 110 ~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~ 189 (635)
. ....+...++|+|..... .+.. ...+ .+..++...+..++++|...|.++|++|.............+.+
T Consensus 83 ~--~~~~~~~~~iPvV~~~~~--~~~~--~~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 153 (301)
T 3miz_A 83 I--VDPESGDVSIPTVMINCR--PQTR--ELLP---SIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDAF 153 (301)
T ss_dssp E--CCCCCTTCCCCEEEEEEE--CSST--TSSC---EEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHH
T ss_pred H--HHHHHHhCCCCEEEECCC--CCCC--CCCC---EEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHHH
Confidence 1 345566789999988654 2211 0223 46678888888999999889999999998665421003456778
Q ss_pred HHHHhccCCeEEEEEeeeCC---CCCCCCchHHH-HHHHHhhhh--cCceEEEEecCChhHHHHHHHHHHHcCCC
Q 006683 190 AEALQNVSSSEIQSRLVLPP---ISSISDPKEAV-RGELKKVQD--KQSRVFIVLQASLDMTIHLFTEANRMGLV 258 (635)
Q Consensus 190 ~~~l~~~g~~~v~~~~~~~~---~~~~~d~~~~~-~~~l~~l~~--~~~~vii~~~~~~~~~~~~l~~a~~~g~~ 258 (635)
++.+++.| +.+.....+.. .... + ..+ ...++++.+ ..+++|++ .+...+..+++++++.|+.
T Consensus 154 ~~al~~~g-~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~l~~~~~~~ai~~--~~d~~A~g~~~al~~~g~~ 222 (301)
T 3miz_A 154 RRTTSEFG-LTENDLSISLGMDGPVGA-E--NNYVFAAATEMLKQDDRPTAIMS--GNDEMAIQIYIAAMALGLR 222 (301)
T ss_dssp HHHHHHHT-CCGGGEEEEECEESSTTS-C--EECHHHHHHHHHTSTTCCSEEEE--SSHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcC-CCCCcceEEEcCCCCcCc-c--ccHHHHHHHHHHcCCCCCcEEEE--CCHHHHHHHHHHHHHcCCC
Confidence 88888888 65422111111 1111 1 111 123333332 26888876 5666788899999999985
No 142
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=97.58 E-value=0.0049 Score=63.45 Aligned_cols=213 Identities=10% Similarity=0.061 Sum_probs=127.3
Q ss_pred CCCeEEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhH
Q 006683 31 IEEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEET 110 (635)
Q Consensus 31 ~~~~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (635)
++..-+||+++|.+..+...+..+++.+.++.+ +.+.+...+... +....+. ..++++||-... .
T Consensus 22 ~~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~g-----~~~~i~~~~~~~------~~i~~l~-~~~vDGiIi~~~---~ 86 (412)
T 4fe7_A 22 FTKRHRITLLFNANKAYDRQVVEGVGEYLQASQ-----SEWDIFIEEDFR------ARIDKIK-DWLGDGVIADFD---D 86 (412)
T ss_dssp CCCCEEEEEECCTTSHHHHHHHHHHHHHHHHHT-----CCEEEEECC-CC---------------CCCSEEEEETT---C
T ss_pred CCCCceEEEEeCCcchhhHHHHHHHHHHHHhcC-----CCeEEEecCCcc------chhhhHh-cCCCCEEEEecC---C
Confidence 356789999999766665677777777777654 345544333221 1133444 677887775222 2
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCC--CcchHHH
Q 006683 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGG--DSGKLAL 188 (635)
Q Consensus 111 ~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~--~~~~~~~ 188 (635)
..+...+...++|+|..... .+.... .+.+-.+..++...+..++++|...|-+++++|........ .....+.
T Consensus 87 ~~~~~~l~~~~iPvV~i~~~--~~~~~~--~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~G 162 (412)
T 4fe7_A 87 KQIEQALADVDVPIVGVGGS--YHLAES--YPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYA 162 (412)
T ss_dssp HHHHHHHTTCCSCEEEEEEC--CSSGGG--SCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHHH
T ss_pred hHHHHHHhhCCCCEEEecCC--cccccc--CCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHHH
Confidence 33455677789999988755 222111 12344577888888889999998899999999987654320 0445678
Q ss_pred HHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhh-h-cCceEEEEecCChhHHHHHHHHHHHcCCCC-CCeEEE
Q 006683 189 LAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQ-D-KQSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSVWI 265 (635)
Q Consensus 189 ~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~-~-~~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~~i 265 (635)
+++.+++.| +...... .......+. ......++++. . ..+++|++ .+...+..+++++.+.|+.. .+...+
T Consensus 163 f~~al~~~g-~~~~~~~--~~~~~~~~~-~~~~~~~~~~l~~~~~~~aI~~--~nD~~A~g~~~al~~~G~~vP~disvi 236 (412)
T 4fe7_A 163 FRQLVAEEK-YRGVVYQ--GLETAPENW-QHAQNRLADWLQTLPPQTGIIA--VTDARARHILQVCEHLHIPVPEKLCVI 236 (412)
T ss_dssp HHHHHTTSS-SCCEEEC--CSCSSCSSH-HHHHHHHHHHHHHSCTTEEEEE--SSHHHHHHHHHHHHHHTCCTTTTSEEE
T ss_pred HHHHHHHcC-CCccccc--cccccccch-hhHHHHHHHHHHhCCCCeEEEE--EecHHHHHHHHHHHHcCCCCCceEEEE
Confidence 889999988 6543211 111101111 22233343333 2 36788875 66778888999999999853 345555
Q ss_pred eeC
Q 006683 266 VTN 268 (635)
Q Consensus 266 ~~~ 268 (635)
+.+
T Consensus 237 g~D 239 (412)
T 4fe7_A 237 GID 239 (412)
T ss_dssp ESS
T ss_pred eec
Confidence 544
No 143
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=97.54 E-value=0.013 Score=58.58 Aligned_cols=201 Identities=12% Similarity=0.058 Sum_probs=120.3
Q ss_pred CCeEEEEEEeeCC---CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChh
Q 006683 32 EEVTKIGAIVDAN---SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWE 108 (635)
Q Consensus 32 ~~~i~IG~i~p~s---~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (635)
+++++||+++|-. ..+......|++.+.++.+. ++++.+.++..+.....+.+.+++ ++++.+||+... .
T Consensus 24 ~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~-----~~~~~~~e~~~~~~d~~~~l~~l~-~~g~d~Ii~~g~-~ 96 (356)
T 3s99_A 24 EEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALGD-----KVETTFLENVAEGADAERSIKRIA-RAGNKLIFTTSF-G 96 (356)
T ss_dssp --CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTT-----TEEEEEECSCCTTHHHHHHHHHHH-HTTCSEEEECSG-G
T ss_pred CCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCC-----ceEEEEEecCCCHHHHHHHHHHHH-HCCCCEEEECCH-H
Confidence 5679999999743 24556677788877777652 266666776655555567777887 688999998643 3
Q ss_pred hHHHHHHhhccC-CccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH--HHCCCeEEEEEEEcCCCCCCcch
Q 006683 109 ETAVVAEIASRV-QVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA--RKYNWRRVAAIYEDNVYGGDSGK 185 (635)
Q Consensus 109 ~~~~v~~~~~~~-~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l--~~~~w~~vaii~~~~~~g~~~~~ 185 (635)
...++...+..+ ++|++..... .+ .|++...... ..++.-++-++ .--+-++|++|........ ...
T Consensus 97 ~~~~~~~vA~~~Pdv~fv~id~~--~~------~~Nv~sv~~~-~~eg~ylaG~~A~~~tk~~kIGfVgg~~~p~v-~~~ 166 (356)
T 3s99_A 97 YMDPTVKVAKKFPDVKFEHATGY--KT------ADNMSAYNAR-FYEGRYVQGVIAAKMSKKGIAGYIGSVPVPEV-VQG 166 (356)
T ss_dssp GHHHHHHHHTTCTTSEEEEESCC--CC------BTTEEEEEEC-HHHHHHHHHHHHHHHCSSCEEEEEECCCCHHH-HHH
T ss_pred HHHHHHHHHHHCCCCEEEEEecc--cc------CCcEEEEEec-hhHHHHHHHHHHHHhcCCCEEEEECCCccHHH-HHH
Confidence 455666777665 7888765433 11 1333333333 33444333332 1122479999986543110 334
Q ss_pred HHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCC
Q 006683 186 LALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGL 257 (635)
Q Consensus 186 ~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~ 257 (635)
.+.|.+.++..+ ..+.....+... ..|. ..-.+..+.+.+.++|+|+. ..+.. .+++++++.|.
T Consensus 167 ~~GF~~G~k~~n-p~i~v~~~~~g~--~~d~-~kg~~~a~~l~~~G~DvIf~-~~d~~---Gv~~aa~e~Gv 230 (356)
T 3s99_A 167 INSFMLGAQSVN-PDFRVKVIWVNS--WFDP-GKEADAAKALIDQGVDIITQ-HTDST---AAIQVAHDRGI 230 (356)
T ss_dssp HHHHHHHHHTTC-TTCEEEEEECSS--SCCH-HHHHHHHHHHHHTTCSEEEE-SSSSS---HHHHHHHHTTC
T ss_pred HHHHHHHHHHHC-CCCEEEEEECCC--CCCh-HHHHHHHHHHHhCCCcEEEE-CCCch---HHHHHHHHcCC
Confidence 667888888766 443333333322 1222 23345667777779999988 66653 67888998774
No 144
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=97.54 E-value=0.016 Score=56.49 Aligned_cols=196 Identities=12% Similarity=0.118 Sum_probs=113.9
Q ss_pred CeEEEEEEeeC--CC-cCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhh
Q 006683 33 EVTKIGAIVDA--NS-QMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (635)
Q Consensus 33 ~~i~IG~i~p~--s~-~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (635)
++.+||+++|- +. .+......|++.+.++. |+++ .+.++..++....+.+..++ ++++.+||......
T Consensus 4 ~~~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~-----g~~~--~~~~~~~~~~~~~~~l~~l~-~~~vdgIi~~~~~~- 74 (296)
T 2hqb_A 4 GGGMVGLLVEDTIDDQGWNRKAYEGLLNIHSNL-----DVDV--VLEEGVNSEQKAHRRIKELV-DGGVNLIFGHGHAF- 74 (296)
T ss_dssp --CEEEEECCCC----CCTHHHHHHHHHHHHHS-----CCEE--EEECCCCSHHHHHHHHHHHH-HTTCCEEEECSTHH-
T ss_pred CCcEEEEEECCCCCCCcHHHHHHHHHHHHHHHh-----CCeE--EEEeCCCCHHHHHHHHHHHH-HCCCCEEEEcCHhH-
Confidence 45799999983 33 56667777777776653 3444 44555455444445566666 78899888754332
Q ss_pred HHHHHHhhccC-CccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHC-CCeEEEEEEEcCCCCCCcchHH
Q 006683 110 TAVVAEIASRV-QVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKY-NWRRVAAIYEDNVYGGDSGKLA 187 (635)
Q Consensus 110 ~~~v~~~~~~~-~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~-~w~~vaii~~~~~~g~~~~~~~ 187 (635)
...+..++..+ ++|++..... .+ . +.+-....+...-+.....++.++ +-++|++|..... . . ..+
T Consensus 75 ~~~~~~~~~~~p~~p~v~id~~--~~---~---~~~~~v~~d~~~g~~lag~la~~l~~~~~Ig~i~g~~~-~--~-r~~ 142 (296)
T 2hqb_A 75 AEYFSTIHNQYPDVHFVSFNGE--VK---G---ENITSLHFEGYAMGYFGGMVAASMSETHKVGVIAAFPW-Q--P-EVE 142 (296)
T ss_dssp HHHHHTTTTSCTTSEEEEESCC--CC---S---SSEEEEEECCHHHHHHHHHHHHHTCSSSEEEEEESCTT-C--H-HHH
T ss_pred HHHHHHHHHHCCCCEEEEEecC--cC---C---CCEEEEEechHHHHHHHHHHHHhhccCCeEEEEcCcCc-h--h-hHH
Confidence 33455555544 8888876533 11 1 233334455544444344434442 5589999986532 2 3 678
Q ss_pred HHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcC
Q 006683 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMG 256 (635)
Q Consensus 188 ~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g 256 (635)
.+++.+++.| .. .....+.... .+. ..-.+..+++.+.++++|+. .....+..+++++++.|
T Consensus 143 Gf~~~~~~~~-~~-~~~~~~~~~~--~~~-~~g~~~a~~ll~~~~daI~~--~~D~~a~Gv~~a~~e~G 204 (296)
T 2hqb_A 143 GFVDGAKYMN-ES-EAFVRYVGEW--TDA-DKALELFQELQKEQVDVFYP--AGDGYHVPVVEAIKDQG 204 (296)
T ss_dssp HHHHHHHHTT-CC-EEEEEECSSS--SCH-HHHHHHHHHHHTTTCCEEEC--CCTTTHHHHHHHHHHHT
T ss_pred HHHHHHHHhC-CC-eEEEEeeccc--cCH-HHHHHHHHHHHHCCCcEEEE--CCCCCCHHHHHHHHHcC
Confidence 8899999888 75 3222222211 111 22334556666667998875 55556677888999887
No 145
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=97.46 E-value=0.0062 Score=61.09 Aligned_cols=209 Identities=11% Similarity=0.041 Sum_probs=118.7
Q ss_pred CCeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCC-CHHHHHHHHHHHhhcCCeEEEE--cCCCh
Q 006683 32 EEVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNR-DPFQAATAAQELINKEKVKVIA--GMETW 107 (635)
Q Consensus 32 ~~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~-~~~~a~~~~~~li~~~~v~aii--G~~~s 107 (635)
+...+||+++|.- ..+...+..+++.+.++. |+.+.+ .++.. ++....+....++ ..++++|| ++...
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~-----g~~~~~--~~~~~~~~~~~~~~l~~l~-~~~vdGiIi~~~~~~ 130 (349)
T 1jye_A 59 KQSLLIGVATSSLALHAPSQIVAAILSRADQL-----GASVVV--SMVERSGVEACKTAVHNLL-AQRVSGLIINYPLDD 130 (349)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHT-----TCEEEE--EECCSSSHHHHHHHHHHHH-TTTCSCEEEESCCCH
T ss_pred CCCCEEEEEeCCCCcccHHHHHHHHHHHHHHc-----CCEEEE--EeCCCCcHHHHHHHHHHHH-HCCCCEEEEecCCCC
Confidence 3467899999864 333344555655555442 455544 44433 3444444555666 66777555 34333
Q ss_pred hhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHH
Q 006683 108 EETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLA 187 (635)
Q Consensus 108 ~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~ 187 (635)
.. .+...+...++|+|..... . ....+ .+..++...+...+++|...|.++|++|.............+
T Consensus 131 ~~--~~~~~~~~~~iPvV~i~~~--~----~~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~ 199 (349)
T 1jye_A 131 QD--AIAVEAACTNVPALFLDVS--D----QTPIN---SIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLA 199 (349)
T ss_dssp HH--HHHHHHHTTTSCEEESSSC--T----TSSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHH
T ss_pred hh--HHHHHHhhCCCCEEEEccc--C----CCCCC---EEEEchHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHH
Confidence 22 2233344579999987533 1 11223 355677777777888887789999999986543210034456
Q ss_pred HHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc--CceEEEEecCChhHHHHHHHHHHHcCCCC-CCeEE
Q 006683 188 LLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK--QSRVFIVLQASLDMTIHLFTEANRMGLVG-KDSVW 264 (635)
Q Consensus 188 ~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~--~~~vii~~~~~~~~~~~~l~~a~~~g~~~-~~~~~ 264 (635)
.+++.+++.| +.+.... .... +. .+-...++++.+. .+++|++ .+...+..+++++++.|+.- .+...
T Consensus 200 Gf~~al~~~g-i~~~~~~--~~~~---~~-~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~~~al~~~G~~vP~disv 270 (349)
T 1jye_A 200 GWHKYLTRNQ-IQPIAER--EGDW---SA-MSGFQQTMQMLNEGIVPTAMLV--ANDQMALGAMRAITESGLRVGADISV 270 (349)
T ss_dssp HHHHHHHHTT-CCCSEEE--ECCS---SH-HHHHHHHHHHHHTTCCCSEEEE--SSHHHHHHHHHHHHHTTCCBTTTBEE
T ss_pred HHHHHHHHcC-CCccccc--cCCC---Ch-HHHHHHHHHHHhCCCCCCEEEE--CChHHHHHHHHHHHHcCCCCCCcEEE
Confidence 7888899888 7643321 1111 11 2222334444332 5788876 56667888999999999853 34444
Q ss_pred EeeC
Q 006683 265 IVTN 268 (635)
Q Consensus 265 i~~~ 268 (635)
++.+
T Consensus 271 vGfD 274 (349)
T 1jye_A 271 VGYD 274 (349)
T ss_dssp ECSB
T ss_pred EEEC
Confidence 4443
No 146
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=97.05 E-value=0.028 Score=55.64 Aligned_cols=215 Identities=11% Similarity=0.101 Sum_probs=128.4
Q ss_pred CCeEEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCC--------CeEEEEEEecCCCCH-----HHHHHHHHHHhhcCCe
Q 006683 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSR--------NHKLSLQIRDHNRDP-----FQAATAAQELINKEKV 98 (635)
Q Consensus 32 ~~~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~--------g~~l~~~~~D~~~~~-----~~a~~~~~~li~~~~v 98 (635)
..+.+||++..-.+ ...+..++++..+++-|..+. ...+.+++..+-.|+ ..++....++..+.++
T Consensus 10 ~~~~~igi~t~t~s-~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~se~~ttI~~I~~~a~~~gy 88 (371)
T 3qi7_A 10 IDDFKVAVVTQPLS-ENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTSNIDSAINKIVKLADDKEV 88 (371)
T ss_dssp CCCEEEEEEECCTT-TCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGGGHHHHHHHHHGGGGCTTE
T ss_pred CCCeEEEEEcCCcC-CCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchHHHHHHHHHHHHHhhcCCC
Confidence 45799998887643 346778899999999987431 122334433322222 3457778888878888
Q ss_pred EEEEcCCChhhHHHHHHhhccCCccEEeecCCC-CCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcC
Q 006683 99 KVIAGMETWEETAVVAEIASRVQVPILSFAAPA-VTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDN 177 (635)
Q Consensus 99 ~aiiG~~~s~~~~~v~~~~~~~~ip~Is~~~~~-~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~ 177 (635)
.+||............+.+.+.+++.|-..+.. -++..... +..+ .+..++..-+...+++|...|.+++++|....
T Consensus 89 k~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~-~~di-~V~~Dn~~Ggy~A~~~Li~~Ghk~Ia~Isgp~ 166 (371)
T 3qi7_A 89 QAIVVSTDQAGLLPALQKVKEKRPEIITISAPMGDDKNQLSQ-FVDV-NLGVSAEERGKVLAERSKEMGAKAFIHYASTD 166 (371)
T ss_dssp EEEEEECSSCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHH-HSSE-EEECCHHHHHHHHHHHHHHTTCSCEEEEEETT
T ss_pred eEEEEECCCcchHHHHHHHHhcCCCEEEEeccccccchhhcc-cCce-EEEeChHHHHHHHHHHHHHCCCCEEEEEeccc
Confidence 888864433222333455555555544333220 01111000 1122 46667777777788999999999999999754
Q ss_pred CCCC--CcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhh---------hh-cCceEEEEecCChhHH
Q 006683 178 VYGG--DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKV---------QD-KQSRVFIVLQASLDMT 245 (635)
Q Consensus 178 ~~g~--~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l---------~~-~~~~vii~~~~~~~~~ 245 (635)
.... .....+.+++.+++.| +.+.... .+ +. ..+ ..+ ...+++ .+ ..+++|+. ++-..+
T Consensus 167 ~~~~~~~~~R~~Gyk~Al~e~G-i~~~~~~-~~-d~-t~e--~G~-~~a~~lL~~~~~~~~~~~~~~TAIFa--tND~mA 237 (371)
T 3qi7_A 167 DLKDVNIAKRLEMIKETCKNIG-LPFVQVN-TP-NI-NTE--EDK-NKVKQFLNEDIEKQVKKYGKDINVFG--VNEYMD 237 (371)
T ss_dssp GGGSHHHHHHHHHHHHHHHHTT-CCEEEEE-EC-CC-SST--HHH-HHHHHHHHHHHHHHHHHHCSCCEEEE--SSHHHH
T ss_pred cccchhHHHHHHHHHHHHHHcC-CCceeec-CC-CC-chH--HHH-HHHHHHHhccccchhhccCCCcEEEE--CCHHHH
Confidence 3210 0224567999999999 8776543 22 11 111 222 222221 12 24577775 788889
Q ss_pred HHHHHHHHHcCCC
Q 006683 246 IHLFTEANRMGLV 258 (635)
Q Consensus 246 ~~~l~~a~~~g~~ 258 (635)
..+++++.+.|+.
T Consensus 238 iG~ikal~e~Gi~ 250 (371)
T 3qi7_A 238 EVILTKALELKYI 250 (371)
T ss_dssp HHHHHHHHHHCCB
T ss_pred HHHHHHHHHcCCc
Confidence 9999999999974
No 147
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=97.05 E-value=0.0065 Score=61.40 Aligned_cols=215 Identities=9% Similarity=0.066 Sum_probs=118.1
Q ss_pred CCeEEEEEEeeCCCc--CcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhh
Q 006683 32 EEVTKIGAIVDANSQ--MGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE 109 (635)
Q Consensus 32 ~~~i~IG~i~p~s~~--~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~ 109 (635)
+..-+||+++|.... ....+...+..++++.=. |+.+.+...+...+. .-.+....+. ..++.+||-......
T Consensus 66 ~~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~---g~~~~~~~~~~~~~~-~~~~~~~~l~-~~~vdGiIi~~~~~~ 140 (366)
T 3h5t_A 66 RRAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG---DTQLTLIPASPASSV-DHVSAQQLVN-NAAVDGVVIYSVAKG 140 (366)
T ss_dssp --CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS---SCEEEEEECCCCTTC-CHHHHHHHHH-TCCCSCEEEESCCTT
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHh---hCCEEEEEcCCCccH-HHHHHHHHHH-hCCCCEEEEecCCCC
Confidence 345789999997421 111222233333333322 567776655533221 1122333444 667765553222211
Q ss_pred HHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEc-------------
Q 006683 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYED------------- 176 (635)
Q Consensus 110 ~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~------------- 176 (635)
. .....+...++|+|..... . .....+ .+..++...+..++++|...|.+++++|...
T Consensus 141 ~-~~~~~l~~~~iPvV~i~~~--~---~~~~~~---~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~ 211 (366)
T 3h5t_A 141 D-PHIDAIRARGLPAVIADQP--A---REEGMP---FIAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRE 211 (366)
T ss_dssp C-HHHHHHHHHTCCEEEESSC--C---SCTTCC---EEEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHH
T ss_pred h-HHHHHHHHCCCCEEEECCc--c---CCCCCC---EEEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCccccc
Confidence 1 2334455679999987543 2 122233 3567888888889999988999999999832
Q ss_pred ------CCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhh--cCceEEEEecCChhHHHHH
Q 006683 177 ------NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQASLDMTIHL 248 (635)
Q Consensus 177 ------~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~--~~~~vii~~~~~~~~~~~~ 248 (635)
.... ....+.+++.+++.| +.+.....+..... + ...-...++++.+ ..+++|++ .+...+..+
T Consensus 212 ~~~~~~~~~~--~~R~~Gf~~al~~~g-~~~~~~~~~~~~~~--~-~~~~~~~~~~ll~~~~~~~ai~~--~nD~~A~g~ 283 (366)
T 3h5t_A 212 RLENAQYQVQ--RDRVRGAMEVFIEAG-IDPGTVPIMECWIN--N-RQHNFEVAKELLETHPDLTAVLC--TVDALAFGV 283 (366)
T ss_dssp HHHTCCCTTH--HHHHHHHHHHHHHHT-CCGGGSCEEEESSC--C-HHHHHHHHHHHHHHCTTCCEEEE--SSHHHHHHH
T ss_pred cccccccchH--HHHHHHHHHHHHHCC-CCCCcceEEEcCCC--C-HHHHHHHHHHHHcCCCCCcEEEE--CCcHHHHHH
Confidence 1122 345677888999988 65321101111110 1 1223334444433 26788876 566678889
Q ss_pred HHHHHHcCCCC-CCeEEEeeC
Q 006683 249 FTEANRMGLVG-KDSVWIVTN 268 (635)
Q Consensus 249 l~~a~~~g~~~-~~~~~i~~~ 268 (635)
++++++.|+.- .+...++.+
T Consensus 284 ~~al~~~G~~vP~disvigfD 304 (366)
T 3h5t_A 284 LEYLKSVGKSAPADLSLTGFD 304 (366)
T ss_dssp HHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHHcCCCCCCceEEEEEC
Confidence 99999999863 334444443
No 148
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=96.44 E-value=0.0011 Score=65.43 Aligned_cols=100 Identities=14% Similarity=0.079 Sum_probs=63.9
Q ss_pred CCCEEEEecCCCCccceEEeecCCCCCCCCCCCccccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccE
Q 006683 452 QEPMRIGVPTRTFFEKFVVIKDDPLNGNSNDKNLRYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDA 531 (635)
Q Consensus 452 ~~~l~v~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~ 531 (635)
..+||||+. |.++|+.+.. . -.+|++.|++++|++++++... +|++++..|.+|++|+
T Consensus 3 ~~~l~iG~~--p~~~p~~~~~-------------~----~~~l~~~l~k~lG~~ve~~~~~---~~~~~i~al~~G~vDi 60 (310)
T 3n5l_A 3 QPVINFGII--STESSQNLKS-------------I----WEPFLKDMSQQTGYQVKAFFAP---DYAGIIQGMRFDKVDI 60 (310)
T ss_dssp CCEEEEEEC--CSSCHHHHHH-------------H----HHHHHHHHHHHHSSEEEEECCS---SHHHHHHHHHTTSCSE
T ss_pred CcEEEEEEe--cCCCHHHHHH-------------H----HHHHHHHHHHHhCCCEEEEeCC---CHHHHHHHHHcCCCCE
Confidence 357999994 3445544321 1 2489999999999986554322 4999999999999999
Q ss_pred EEec-cccccc--ccccccccccc-----eeeeeEEEEeCCCCCCcceee
Q 006683 532 AVGD-LTILGN--RTEYVEFTQPY-----AESGFSMIVPAKQEESTWMFT 573 (635)
Q Consensus 532 ~~~~-~~~~~~--r~~~~~fs~p~-----~~~~~~~~v~~~~~~~~~~~l 573 (635)
++.+ .+.... |.....|+.++ ......++|+++++.+.+..|
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~lvv~~ds~i~sl~DL 110 (310)
T 3n5l_A 61 AWYGNKAAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKDSKIDSLEDM 110 (310)
T ss_dssp EECCHHHHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETTCSCCSHHHH
T ss_pred EEECcHHHHHHHHhcCCeEEEEEeccCCCcceEEEEEEECCCCCCCHHHH
Confidence 9754 444333 33344454332 112347888988766444333
No 149
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=95.87 E-value=0.0029 Score=62.56 Aligned_cols=77 Identities=18% Similarity=0.140 Sum_probs=53.1
Q ss_pred HHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccEEEe-cccccccc--cccccccc-------cceeeeeEEEE
Q 006683 492 IELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVG-DLTILGNR--TEYVEFTQ-------PYAESGFSMIV 561 (635)
Q Consensus 492 ~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~-~~~~~~~r--~~~~~fs~-------p~~~~~~~~~v 561 (635)
.+|++.|++++|++++++... +|++++..|.+|++|+++. +.+.+..| .....|.. |++ ...++|
T Consensus 34 ~~l~~~L~k~lG~~ve~~~~~---~~~~~i~aL~~G~vDia~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~y--~~~lvv 108 (321)
T 3p7i_A 34 TPFLQDMEKKLGVKVNAFFAP---DYAGIIQGMRFNKVDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGY--WSVLIV 108 (321)
T ss_dssp HHHHHHHHHHHTSCEEEECCS---SHHHHHHHHHTTSCSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSSB--CEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEecC---CHHHHHHHHHcCCCcEEEEChHHHHHHHHhcCCEEEEEEeccCCCcce--EEEEEE
Confidence 479999999999986555322 4999999999999999975 45555443 33344543 333 247888
Q ss_pred eCCCCCCcceee
Q 006683 562 PAKQEESTWMFT 573 (635)
Q Consensus 562 ~~~~~~~~~~~l 573 (635)
+++++.+.+..|
T Consensus 109 ~~ds~i~sl~DL 120 (321)
T 3p7i_A 109 NKDSPINNLNDL 120 (321)
T ss_dssp ETTCSCCSHHHH
T ss_pred ECCCCCCCHHHH
Confidence 988776444333
No 150
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=95.22 E-value=0.18 Score=47.05 Aligned_cols=130 Identities=17% Similarity=0.082 Sum_probs=86.4
Q ss_pred HHHHhhcCCeEEEEcCCChhhH--------HHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHH
Q 006683 89 AQELINKEKVKVIAGMETWEET--------AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIAD 160 (635)
Q Consensus 89 ~~~li~~~~v~aiiG~~~s~~~--------~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~ 160 (635)
+.+|. +.++.+|+-+.++.+. .....+.+..++|+++. ..++++
T Consensus 59 a~~L~-~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~~---------------------------~~A~~~ 110 (240)
T 3ixl_A 59 ARRLQ-KQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTM---------------------------STAVLN 110 (240)
T ss_dssp HHHHH-HTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEEH---------------------------HHHHHH
T ss_pred HHHhc-cCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEECH---------------------------HHHHHH
Confidence 44444 6799998875555443 23344555567888742 467788
Q ss_pred HHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCC---CCCchHHHHHHHHh-h-hhcCceEE
Q 006683 161 LARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISS---ISDPKEAVRGELKK-V-QDKQSRVF 235 (635)
Q Consensus 161 ~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~---~~d~~~~~~~~l~~-l-~~~~~~vi 235 (635)
.+++.|.++|+++.. |. ....+.+++.+++.| +++........... ..-....+.+.+++ + ...++|+|
T Consensus 111 al~~~g~~rvglltp---y~--~~~~~~~~~~l~~~G-iev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adai 184 (240)
T 3ixl_A 111 GLRALGVRRVALATA---YI--DDVNERLAAFLAEES-LVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGI 184 (240)
T ss_dssp HHHHTTCSEEEEEES---SC--HHHHHHHHHHHHHTT-CEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEE
T ss_pred HHHHhCCCEEEEEeC---Ch--HHHHHHHHHHHHHCC-CEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEE
Confidence 888999999999974 66 666788899999999 88876544332110 00112467777888 7 66789999
Q ss_pred EEecCChhHHHHHHHHHH
Q 006683 236 IVLQASLDMTIHLFTEAN 253 (635)
Q Consensus 236 i~~~~~~~~~~~~l~~a~ 253 (635)
++ .|..-....++.+.+
T Consensus 185 vL-~CT~l~~l~~i~~le 201 (240)
T 3ixl_A 185 LL-SSGGLLTLDAIPEVE 201 (240)
T ss_dssp EE-ECTTSCCTTHHHHHH
T ss_pred EE-eCCCCchhhhHHHHH
Confidence 99 777655544444433
No 151
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=93.49 E-value=0.073 Score=53.12 Aligned_cols=79 Identities=8% Similarity=-0.053 Sum_probs=57.4
Q ss_pred HHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccEEEeccccc----ccccccccccccceeeeeEEEEeCCCCCCc
Q 006683 494 LFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTIL----GNRTEYVEFTQPYAESGFSMIVPAKQEEST 569 (635)
Q Consensus 494 l~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~----~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~ 569 (635)
+.+.+++. |++++++.+...+++..++..|.+|++|+++.+.... .++.+...++.++...+..++++++++...
T Consensus 35 l~~~~~~~-G~~v~~~~~~~~g~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~lvv~~~s~i~s 113 (348)
T 3uif_A 35 FPEELRKQ-GIKVEWVPAAMASVGPVINEGFASGKIDFGIYGDLPPIILNASKPTVQLVAPWGTTSNSYLVVPKNSTAKS 113 (348)
T ss_dssp HHHHHHHT-TEEEEEEEECTTCHHHHHHHHHHTTCCCEEEEESHHHHHHHHHSCCEEEEEECCCCCCCEEEEETTCCCCS
T ss_pred HHHHHHhc-CCeEEEEecccCCCcHHHHHHHHcCCCCEEecCcHHHHHHHhCCCCEEEEEeccCCCceEEEEECCCCCCC
Confidence 55666666 8886554466555577899999999999998665543 566677777777888889999998776544
Q ss_pred ceee
Q 006683 570 WMFT 573 (635)
Q Consensus 570 ~~~l 573 (635)
...|
T Consensus 114 ~~DL 117 (348)
T 3uif_A 114 IKDL 117 (348)
T ss_dssp GGGG
T ss_pred HHHc
Confidence 4444
No 152
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=93.45 E-value=2.3 Score=40.39 Aligned_cols=89 Identities=15% Similarity=0.108 Sum_probs=58.0
Q ss_pred HHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCC---CCCchHHHHHHHHhhhhcCc
Q 006683 156 KCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISS---ISDPKEAVRGELKKVQDKQS 232 (635)
Q Consensus 156 ~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~---~~d~~~~~~~~l~~l~~~~~ 232 (635)
.++++.++..|-++|+++. +|. ....+.+++.+++.| +++........... .......+.+.++++...++
T Consensus 135 ~A~~~al~~~g~~rvgvlt---p~~--~~~~~~~~~~l~~~G-i~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~ga 208 (273)
T 2xed_A 135 GALVEGLRALDAQRVALVT---PYM--RPLAEKVVAYLEAEG-FTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEV 208 (273)
T ss_dssp HHHHHHHHHTTCCEEEEEE---CSC--HHHHHHHHHHHHHTT-CEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTC
T ss_pred HHHHHHHHHcCCCeEEEEc---CCh--hhhHHHHHHHHHHCC-CEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCC
Confidence 4556666777889999995 555 555568888999999 88765544332110 00112457778888877799
Q ss_pred eEEEEec-CChhHHHHHHHH
Q 006683 233 RVFIVLQ-ASLDMTIHLFTE 251 (635)
Q Consensus 233 ~vii~~~-~~~~~~~~~l~~ 251 (635)
|+||+ . |..-....+..+
T Consensus 209 daIvL-g~CT~l~~~~~~~~ 227 (273)
T 2xed_A 209 DALVI-SCAVQMPSLPLVET 227 (273)
T ss_dssp SEEEE-ESSSSSCCTTHHHH
T ss_pred CEEEE-cCCCCcchHHhHHH
Confidence 99999 7 766554333343
No 153
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=92.92 E-value=0.082 Score=51.47 Aligned_cols=85 Identities=9% Similarity=-0.114 Sum_probs=61.7
Q ss_pred cccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccEEEec-ccccccc---cccccccccceeeeeEEEE
Q 006683 486 RYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGD-LTILGNR---TEYVEFTQPYAESGFSMIV 561 (635)
Q Consensus 486 ~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~-~~~~~~r---~~~~~fs~p~~~~~~~~~v 561 (635)
.+.|+.+.+.+-+.++.|++++++ +.. ....++..|.+|++|+++++ ......| .....++.++...+..+++
T Consensus 16 ~~~~~~va~~~g~~~~~Gl~v~~~--~~~-~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~ 92 (302)
T 3ix1_A 16 VHTFLYVAIENGYFAEEGLDVDIV--FPT-NPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRSPLNHVMF 92 (302)
T ss_dssp GGHHHHHHHHTTHHHHTTEEEEEE--CCS-STTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECSCCEEEEE
T ss_pred ccHHHHHHHHcChHHHcCCcEEEe--cCC-CCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEeccCCEEEEE
Confidence 678999999999999999885554 322 24589999999999999887 3333333 3456666677777889999
Q ss_pred eCCCCCCcceee
Q 006683 562 PAKQEESTWMFT 573 (635)
Q Consensus 562 ~~~~~~~~~~~l 573 (635)
+++++.+....|
T Consensus 93 ~~~s~i~s~~DL 104 (302)
T 3ix1_A 93 LAEQDFDSPADL 104 (302)
T ss_dssp EGGGCCSSGGGG
T ss_pred ECCCCCCChHHc
Confidence 987665433333
No 154
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=91.69 E-value=0.033 Score=30.74 Aligned_cols=18 Identities=22% Similarity=0.606 Sum_probs=15.0
Q ss_pred cccchhhHhHHHHhhccC
Q 006683 612 DQISNILWFAFSTIFFSH 629 (635)
Q Consensus 612 ~~~~~~~w~~~~~~~~q~ 629 (635)
.++..++||+||+++..|
T Consensus 7 ~~l~aa~wF~WGvllnsg 24 (27)
T 2nr1_A 7 LTLSSAMWFSWGVLLNSG 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eehhhhHHHhhHhheecc
Confidence 358899999999998754
No 155
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=91.52 E-value=0.14 Score=49.90 Aligned_cols=69 Identities=7% Similarity=0.015 Sum_probs=47.2
Q ss_pred HHHHHC-CCcccEEEecCCCChhhHHHHHHcCcccEEEecccccc-cccc----cccccccceeeeeEEEEeCCCCCC
Q 006683 497 LVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILG-NRTE----YVEFTQPYAESGFSMIVPAKQEES 568 (635)
Q Consensus 497 ~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~-~r~~----~~~fs~p~~~~~~~~~v~~~~~~~ 568 (635)
.+.+++ |++++++..+ ++..++..|.+|++|+++.+..... .+.+ .+.++.++...+.+++++++++..
T Consensus 24 ~~~~~~~g~~v~~~~~~---~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lv~~~~~~i~ 98 (308)
T 2x26_A 24 LLEKRYPESKISWVEFP---AGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEPPKPKAEVILVAENSPIK 98 (308)
T ss_dssp HHHHHCTTSEEEEEECS---SHHHHHHHHHHTSCSEEEECSHHHHHHHHTTCCEEEEEEECCCGGGEEEEEETTCSCC
T ss_pred hHhHhcCCCceEEEECC---CcHHHHHHHHCCCCCEEcccCcHHHHHHhcCCCeEEEEEecCCCCceEEEEeCCCCCC
Confidence 366777 8886665544 2578999999999999887654321 1211 345677777778899999876543
No 156
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=91.45 E-value=4 Score=37.27 Aligned_cols=91 Identities=15% Similarity=0.054 Sum_probs=60.1
Q ss_pred HHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCC---CCCchHHHHHHHHhhhhc-
Q 006683 155 MKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISS---ISDPKEAVRGELKKVQDK- 230 (635)
Q Consensus 155 ~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~---~~d~~~~~~~~l~~l~~~- 230 (635)
..++++.++..|-++|+++. .|. ....+.+++.+++.| +++........... .......+.+.++++.+.
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~--~~~~~~~~~~l~~~G-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYI--KERTLEEVEWWRNKG-FEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEV 169 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSC--HHHHHHHHHHHHTTT-CEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCc--hHHHHHHHHHHHhCC-cEEecccCCCCCCcchhhccCHHHHHHHHHHHhccc
Confidence 46667777778889999995 455 555667888999999 88765543332110 001124577788888777
Q ss_pred -CceEEEEecCChhHHHHHHHHH
Q 006683 231 -QSRVFIVLQASLDMTIHLFTEA 252 (635)
Q Consensus 231 -~~~vii~~~~~~~~~~~~l~~a 252 (635)
++|+||+ .|..-....+..+.
T Consensus 170 ~gadaIvL-gCT~l~~~~~~~~l 191 (223)
T 2dgd_A 170 LKADAVYI-ACTALSTYEAVQYL 191 (223)
T ss_dssp TTSSEEEE-CCTTSCCTTHHHHH
T ss_pred CCCCEEEE-eCCcccHHHHHHHH
Confidence 8999999 87775554344443
No 157
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=90.78 E-value=5.4 Score=38.68 Aligned_cols=125 Identities=16% Similarity=0.152 Sum_probs=80.7
Q ss_pred EEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHHHHHH
Q 006683 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAE 115 (635)
Q Consensus 36 ~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~~ 115 (635)
+||++.............|++.++++.|.+ .++.+++..+-.++..+.+.+.+++ ++++.+|+... ...+..+..
T Consensus 131 ~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~a~~ll-~~~~daI~~~~-d~~a~Gv~~ 205 (318)
T 2fqx_A 131 AVGFIVGMELGMMPLFEAGFEAGVKAVDPD---IQVVVEVANTFSDPQKGQALAAKLY-DSGVNVIFQVA-GGTGNGVIK 205 (318)
T ss_dssp EEEEEESCCSTTTHHHHHHHHHHHHHHCTT---CEEEEEECSCSSCHHHHHHHHHHHH-HTTCCEEEEEC-GGGHHHHHH
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHHCCC---CEEEEEEccCccCHHHHHHHHHHHH-HCCCcEEEECC-CCCchHHHH
Confidence 788887655444456688999999998753 4555444434457888888999999 56788988643 334445555
Q ss_pred hhcc-----CCccEEeecCCCCCCCCC---CCCCceEEEEecCcHHHHHHHHHHHHHCCC
Q 006683 116 IASR-----VQVPILSFAAPAVTPLSM---SRRWPYLIRMASNDSEQMKCIADLARKYNW 167 (635)
Q Consensus 116 ~~~~-----~~ip~Is~~~~~~~~~l~---~~~~p~~~r~~p~~~~~~~al~~~l~~~~w 167 (635)
.+.+ .++-+|++... ..... +...|.+..+..+....+...++.+..=.|
T Consensus 206 a~~e~g~~P~dv~viG~D~~--~~~~~~~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~ 263 (318)
T 2fqx_A 206 EARDRRLNGQDVWVIGVDRD--QYMDGVYDGSKSVVLTSMVKRADVAAERISKMAYDGSF 263 (318)
T ss_dssp HHHHHHHTTCCCEEEEEESC--CGGGGBCSSSCBSEEEEEEECHHHHHHHHHHHHHHTCC
T ss_pred HHHhhhhccCCcEEEEEecc--hhhhccccCCCCeEEEEEEEEHHHHHHHHHHHHHcCCC
Confidence 5555 67888988755 22221 003456666666666677777776655445
No 158
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=90.58 E-value=0.32 Score=48.01 Aligned_cols=75 Identities=11% Similarity=-0.003 Sum_probs=54.4
Q ss_pred HHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccEEEeccccc----ccccccccccccceeeeeEEEEeCCC--CCCc
Q 006683 496 RLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTIL----GNRTEYVEFTQPYAESGFSMIVPAKQ--EEST 569 (635)
Q Consensus 496 ~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~----~~r~~~~~fs~p~~~~~~~~~v~~~~--~~~~ 569 (635)
+.+.++.|++++++ +. ++|..++..|.+|++|+++++.... .++.+...|+.++...+..+++++++ +.+.
T Consensus 56 ~g~~~~~g~~v~~~--~~-~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~s 132 (346)
T 3qsl_A 56 KGFFKDEGLDVSIA--DF-AGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKNLPGYKG 132 (346)
T ss_dssp TTHHHHTTCEEEEE--EC-SSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTTCTTCCS
T ss_pred CCchHhhCCeEEEE--ec-CChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCcccCCCC
Confidence 33356779886555 32 2489999999999999998876654 56777788887777778899999876 4444
Q ss_pred ceee
Q 006683 570 WMFT 573 (635)
Q Consensus 570 ~~~l 573 (635)
+..|
T Consensus 133 ~~DL 136 (346)
T 3qsl_A 133 PADL 136 (346)
T ss_dssp GGGG
T ss_pred hHHc
Confidence 4433
No 159
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=89.32 E-value=5.3 Score=39.54 Aligned_cols=89 Identities=20% Similarity=0.200 Sum_probs=67.5
Q ss_pred EEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHHHHH
Q 006683 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (635)
Q Consensus 35 i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (635)
=+||++.......-.....|+..++++.|.+ .++.+.+..+-.|+..+.+.+.+|+ ++++.+|+...... .+.
T Consensus 150 ~kIGfVgg~~~p~v~~~~~GF~~G~k~~np~---i~v~~~~~g~~~d~~kg~~~a~~l~-~~G~DvIf~~~d~~---Gv~ 222 (356)
T 3s99_A 150 GIAGYIGSVPVPEVVQGINSFMLGAQSVNPD---FRVKVIWVNSWFDPGKEADAAKALI-DQGVDIITQHTDST---AAI 222 (356)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHTTCTT---CEEEEEECSSSCCHHHHHHHHHHHH-HTTCSEEEESSSSS---HHH
T ss_pred CEEEEECCCccHHHHHHHHHHHHHHHHHCCC---CEEEEEECCCCCChHHHHHHHHHHH-hCCCcEEEECCCch---HHH
Confidence 3789998876443345678999999988754 6777766666689999999999999 67999998755442 455
Q ss_pred HhhccCCccEEeecCC
Q 006683 115 EIASRVQVPILSFAAP 130 (635)
Q Consensus 115 ~~~~~~~ip~Is~~~~ 130 (635)
..+++.++.+|.+...
T Consensus 223 ~aa~e~Gv~vIG~D~d 238 (356)
T 3s99_A 223 QVAHDRGIKAFGQASD 238 (356)
T ss_dssp HHHHHTTCEEEEEESC
T ss_pred HHHHHcCCEEEEEcCc
Confidence 6677889999987655
No 160
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=87.99 E-value=0.84 Score=44.83 Aligned_cols=87 Identities=9% Similarity=0.035 Sum_probs=60.1
Q ss_pred cccceeHHHHHHHHHH----CCCcccEEEecCCCChhhHHHHHHcCcccEEEecccccc-c-----------cccccccc
Q 006683 486 RYDGFSIELFRLVVDH----LNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILG-N-----------RTEYVEFT 549 (635)
Q Consensus 486 ~~~G~~~dl~~~la~~----l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~-~-----------r~~~~~fs 549 (635)
.+..+...|.+.+.+. .|++ +++.+..| ..+.+..+.+|++|+++....... . ..+.+.+.
T Consensus 44 ~~~~~~~~la~~l~~~~~~~~g~~--v~v~~~~g-~~~~i~~l~~g~~D~~~~~~~~~~~a~~g~~~f~~~~~~~d~~~v 120 (327)
T 4ddd_A 44 VYYPIGGSICRFIASDYGKDNKII--CSISSTTG-SVYNLNSIRYSNMDISIVQSDLEYYAYNGLGFYEKMLPMDNLRML 120 (327)
T ss_dssp SHHHHHHHHHHHHHHHHGGGTSEE--EEEECCCC-HHHHHHHHHTTSCSEEEEEHHHHHHHHHTCGGGTTSCCCTTEEEE
T ss_pred HHHHHHHHHHHHHHhccCCCCCeE--EEEEecCc-HHHHHHHHHcCCCcEEEECcHHHHHHHhCcCcccccCCCcchheh
Confidence 5667777888888887 6777 54444333 678899999999999987655321 1 12334444
Q ss_pred ccceeeeeEEEEeCCCCCCcceeecC
Q 006683 550 QPYAESGFSMIVPAKQEESTWMFTKP 575 (635)
Q Consensus 550 ~p~~~~~~~~~v~~~~~~~~~~~l~p 575 (635)
.+++.....++++++++.+.+..|++
T Consensus 121 ~~~~~~~~~lvv~~ds~i~sl~DL~g 146 (327)
T 4ddd_A 121 ASLHKEYLTIVVKKSSNISVIDDIKG 146 (327)
T ss_dssp EEEEEEEEEEEEETTSSCCSGGGGTT
T ss_pred hccCCccEEEEEECCCCCCCHHHhCC
Confidence 57778889999999877655555544
No 161
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=87.77 E-value=7.7 Score=37.10 Aligned_cols=120 Identities=15% Similarity=0.038 Sum_probs=76.7
Q ss_pred EEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHHHHHH
Q 006683 36 KIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAE 115 (635)
Q Consensus 36 ~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~~ 115 (635)
+||++....... -..|++.++++.|- . ++.+++..+-.++..+.+++.+++ ++++.+|+. .+...+..+..
T Consensus 128 ~Ig~i~g~~~~~---r~~Gf~~~~~~~~~---~-~~~~~~~~~~~~~~~g~~~a~~ll-~~~~daI~~-~~D~~a~Gv~~ 198 (296)
T 2hqb_A 128 KVGVIAAFPWQP---EVEGFVDGAKYMNE---S-EAFVRYVGEWTDADKALELFQELQ-KEQVDVFYP-AGDGYHVPVVE 198 (296)
T ss_dssp EEEEEESCTTCH---HHHHHHHHHHHTTC---C-EEEEEECSSSSCHHHHHHHHHHHH-TTTCCEEEC-CCTTTHHHHHH
T ss_pred eEEEEcCcCchh---hHHHHHHHHHHhCC---C-eEEEEeeccccCHHHHHHHHHHHH-HCCCcEEEE-CCCCCCHHHHH
Confidence 788887654321 57899999998773 3 444444334457888888899998 567999996 44445566666
Q ss_pred hhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCe
Q 006683 116 IASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWR 168 (635)
Q Consensus 116 ~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~ 168 (635)
.+.+.++.+|++... ...+ ...|.+-.+..+....+...++.+..-.|+
T Consensus 199 a~~e~Gv~viG~D~~--~~~~--~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~ 247 (296)
T 2hqb_A 199 AIKDQGDFAIGYVGD--QADL--GGSTILTSTVQHVDDLYVLVAKRFQEGKLE 247 (296)
T ss_dssp HHHHHTCEEEEEESC--CSSS--SCSSEEEEEEECHHHHHHHHHHHTTTTCCC
T ss_pred HHHHcCCEEEEEecc--hhhh--CCCeEEEEEEEEhHHHHHHHHHHHHcCCCC
Confidence 777788888887643 2221 123555555556555666566655444554
No 162
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=87.37 E-value=0.51 Score=46.25 Aligned_cols=74 Identities=12% Similarity=0.039 Sum_probs=44.7
Q ss_pred HHHHHC-CCcccEEEecCCCChhhHHHHHHcCcccEEEecccc-----cccccccccccccceeeeeEEEEeCCCCCCcc
Q 006683 497 LVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTI-----LGNRTEYVEFTQPYAESGFSMIVPAKQEESTW 570 (635)
Q Consensus 497 ~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~-----~~~r~~~~~fs~p~~~~~~~~~v~~~~~~~~~ 570 (635)
.+.+++ |++++++..+ ++..++..|..|++|+++.+... ...+.-.+..+.++...+..++++++++....
T Consensus 50 ~~~~~~~g~~v~~~~~~---~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~lvv~~~s~I~s~ 126 (324)
T 3ksx_A 50 LLEQRFPRTKITWVEFP---AGPQLLEALNVGSIDLGGAGDIPPLFAQAAGADLLYVGWVPPTPKAETILVPSKSALRTV 126 (324)
T ss_dssp HHHHHCTTSEEEEEEES---SHHHHHHHHHTTSCSEEEEESHHHHHHHHTTCCEEEEEEECCCGGGEEEEEETTCSCCSG
T ss_pred HHHHhcCCCceEEEECC---CHHHHHHHHHCCCCCEEeecCHHHHHHHhcCCCEEEEEEecCCCCceEEEEeCCCCCCCH
Confidence 345555 7775555433 48899999999999998665431 11222222223344445788999987665444
Q ss_pred eee
Q 006683 571 MFT 573 (635)
Q Consensus 571 ~~l 573 (635)
..|
T Consensus 127 ~DL 129 (324)
T 3ksx_A 127 ADL 129 (324)
T ss_dssp GGG
T ss_pred HHh
Confidence 444
No 163
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=87.30 E-value=0.33 Score=48.12 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=44.6
Q ss_pred HHCCCcccEEEecCCCChhhHHHHHHcCcccEEEecccccc-cccccccccccc--eeeeeEEEEeCCCCCC
Q 006683 500 DHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILG-NRTEYVEFTQPY--AESGFSMIVPAKQEES 568 (635)
Q Consensus 500 ~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~-~r~~~~~fs~p~--~~~~~~~~v~~~~~~~ 568 (635)
++.|+++++ ++.. +|..++..|.+|++|+++.+..... .|.+..++.... ...+..++++++++..
T Consensus 78 ~~~G~~Ve~--~~~~-~~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~ivv~~~s~I~ 146 (341)
T 3un6_A 78 NHPKYKLEL--VKFN-NWPDLMDALNSGRIDGASTLIELAMKSKQKGSNIKAVALGHHEGNVIMGQKGMHLN 146 (341)
T ss_dssp SSCSSEEEE--EECS-SHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTCCCEEEEESCEECEEEEESTTCCGG
T ss_pred HHcCCcEEE--EEcC-CHHHHHHHHHcCCCCEEecchHHHHHHHHCCCCeEEEeecCCCceEEEEcCCCCCC
Confidence 556777554 4433 4999999999999999988776544 355555544322 2467788898876543
No 164
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=86.69 E-value=17 Score=32.33 Aligned_cols=159 Identities=16% Similarity=0.223 Sum_probs=97.4
Q ss_pred EEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHHHHH
Q 006683 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (635)
Q Consensus 35 i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (635)
.+|.++.|.. .+..-++....+.+. .+.+ ++ .+-..++..+.++ +.++.+||.-.. ++..+.
T Consensus 5 ~~I~~iapy~-----~l~~~~~~i~~e~~~-----~i~i--~~--~~l~~~v~~a~~~--~~~~dVIISRGg--ta~~lr 66 (196)
T 2q5c_A 5 LKIALISQNE-----NLLNLFPKLALEKNF-----IPIT--KT--ASLTRASKIAFGL--QDEVDAIISRGA--TSDYIK 66 (196)
T ss_dssp CEEEEEESCH-----HHHHHHHHHHHHHTC-----EEEE--EE--CCHHHHHHHHHHH--TTTCSEEEEEHH--HHHHHH
T ss_pred CcEEEEEccH-----HHHHHHHHHHhhhCC-----ceEE--EE--CCHHHHHHHHHHh--cCCCeEEEECCh--HHHHHH
Confidence 5889999985 333344444444432 3443 33 2356678888887 588889985332 333333
Q ss_pred HhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHh
Q 006683 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQ 194 (635)
Q Consensus 115 ~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~ 194 (635)
+..++|+|....+ .....+++... +.++ +++++|...+.. . ..+.+.+.+
T Consensus 67 ---~~~~iPVV~I~~s--------------------~~Dil~al~~a-~~~~-~kIavvg~~~~~---~-~~~~~~~ll- 116 (196)
T 2q5c_A 67 ---KSVSIPSISIKVT--------------------RFDTMRAVYNA-KRFG-NELALIAYKHSI---V-DKHEIEAML- 116 (196)
T ss_dssp ---TTCSSCEEEECCC--------------------HHHHHHHHHHH-GGGC-SEEEEEEESSCS---S-CHHHHHHHH-
T ss_pred ---HhCCCCEEEEcCC--------------------HhHHHHHHHHH-HhhC-CcEEEEeCcchh---h-HHHHHHHHh-
Confidence 3467999865433 23344555554 3444 489999877652 1 256666665
Q ss_pred ccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCC
Q 006683 195 NVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (635)
Q Consensus 195 ~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~ 259 (635)
| .++.... +... .+....++++++.+.++|+- .. ...+.|++.|+.+
T Consensus 117 --~-~~i~~~~-~~~~-------~e~~~~i~~l~~~G~~vvVG-~~------~~~~~A~~~Gl~~ 163 (196)
T 2q5c_A 117 --G-VKIKEFL-FSSE-------DEITTLISKVKTENIKIVVS-GK------TVTDEAIKQGLYG 163 (196)
T ss_dssp --T-CEEEEEE-ECSG-------GGHHHHHHHHHHTTCCEEEE-CH------HHHHHHHHTTCEE
T ss_pred --C-CceEEEE-eCCH-------HHHHHHHHHHHHCCCeEEEC-CH------HHHHHHHHcCCcE
Confidence 4 5555433 2211 56889999999999999886 32 2356689999865
No 165
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=85.66 E-value=4.6 Score=37.03 Aligned_cols=175 Identities=15% Similarity=0.149 Sum_probs=90.4
Q ss_pred eEEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCC--C--CHH-------HHHHHHHHHhhcCCeEEEE
Q 006683 34 VTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHN--R--DPF-------QAATAAQELINKEKVKVIA 102 (635)
Q Consensus 34 ~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~--~--~~~-------~a~~~~~~li~~~~v~aii 102 (635)
..+||+|.|.++..-. -.++...++....|+..+.+.-...+ . +.. ...+.+..+ .+.++.+|+
T Consensus 6 ~~~ig~i~p~~~~~~~----e~~~~~~~~~~~~p~~~i~~~~~p~g~~~~~~~~~~~~~~~~l~~~~~~l-~~~g~d~iv 80 (228)
T 2eq5_A 6 KYTIGLIRVITLEDKE----ILNLHGRIIESAFPELKVVSRCIEDQPKGIYNEETEREAEPKIIRLAKEF-EREGVDAII 80 (228)
T ss_dssp CEEEEEEESSCCCCHH----HHTHHHHHHHHHCTTEEEEEEECSSCTTCCSSHHHHHHHHHHHHHHHHHH-HHTTCSEEE
T ss_pred ceEEEEEeccCccCHH----HHHHHHHHHHhhCCCCeEEEEeCCCCchhccccccHHHhHHHHHHHHHHH-HHCCCCEEE
Confidence 5799999999832111 12222333434445666665333221 1 111 111223344 367888888
Q ss_pred cCCChhhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCC
Q 006683 103 GMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGD 182 (635)
Q Consensus 103 G~~~s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~ 182 (635)
-+.++. ..+..+-+..++|+++.. .+.++.+...+ ++|+++......
T Consensus 81 iaCnta--~~~~~l~~~~~iPvi~i~---------------------------~~~~~~a~~~~-~rigVlat~~t~--- 127 (228)
T 2eq5_A 81 ISCAAD--PAVEKVRKLLSIPVIGAG---------------------------SSVSALALAYG-RRVGVLNLTEET--- 127 (228)
T ss_dssp ECSTTC--TTHHHHHHHCSSCEEEHH---------------------------HHHHHHHHTTC-SSEEEECSSSCC---
T ss_pred EeCCch--HHHHHHHHhCCCCEeCcc---------------------------HHHHHHHHHhC-CeEEEEecCccc---
Confidence 655544 334444455678877532 11112222355 889999875432
Q ss_pred cchHHHHHHHH-hccCCeEEEEEeeeCCC-CC-CCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHH
Q 006683 183 SGKLALLAEAL-QNVSSSEIQSRLVLPPI-SS-ISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEA 252 (635)
Q Consensus 183 ~~~~~~~~~~l-~~~g~~~v~~~~~~~~~-~~-~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a 252 (635)
...+++.+ ++.| ..+.... +... .. .......+.+.++++.+.++|+||+ .|..-....+..+.
T Consensus 128 ---~~~~~~~~~~~~g-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvL-gCT~~~t~~~~~~i 194 (228)
T 2eq5_A 128 ---PKVIRSILGNNLI-AEDHPSG-VSNTLDLLTDWGRREVINAAKRLKEKGVEVIAL-GCTGMSTIGIAPVL 194 (228)
T ss_dssp ---CHHHHHHHGGGEE-EEECCTT-CCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEE-CCTHHHHHTCHHHH
T ss_pred ---HHHHHHHHHHHhC-ccccCCc-eeeHHHhcChHHHHHHHHHHHHHHHcCCCEEEE-CCCCcchHHHHHHH
Confidence 23577788 7777 6542111 1000 00 0011234566677777678999999 88776533344443
No 166
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=84.13 E-value=23 Score=32.20 Aligned_cols=163 Identities=13% Similarity=0.208 Sum_probs=96.4
Q ss_pred EEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHHHHH
Q 006683 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (635)
Q Consensus 35 i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (635)
.+|.++.|.+ ....-++..+.+.+.. .++.+.+. +-..++..+.+++...++.+||.-.. ++..+.
T Consensus 13 ~~ii~i~~~~-----~L~~~~~~i~~e~~~~-----~~I~vi~~--~le~av~~a~~~~~~~~~dVIISRGg--ta~~Lr 78 (225)
T 2pju_A 13 KPVIWTVSVT-----RLFELFRDISLEFDHL-----ANITPIQL--GFEKAVTYIRKKLANERCDAIIAAGS--NGAYLK 78 (225)
T ss_dssp CCEEEEECCH-----HHHHHHHHHHTTTTTT-----CEEEEECC--CHHHHHHHHHHHTTTSCCSEEEEEHH--HHHHHH
T ss_pred CCEEEEEchH-----HHHHHHHHHHHhhCCC-----ceEEEecC--cHHHHHHHHHHHHhcCCCeEEEeCCh--HHHHHH
Confidence 4778888875 3333333344433332 44445553 34567888888774456889995333 333333
Q ss_pred HhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHh
Q 006683 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQ 194 (635)
Q Consensus 115 ~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~ 194 (635)
+..++|+|....+ .....+++... +.++ +++++|...+.. ...+.+.+.+
T Consensus 79 ---~~~~iPVV~I~vs--------------------~~Dil~aL~~a-~~~~-~kIavVg~~~~~----~~~~~i~~ll- 128 (225)
T 2pju_A 79 ---SRLSVPVILIKPS--------------------GYDVLQFLAKA-GKLT-SSIGVVTYQETI----PALVAFQKTF- 128 (225)
T ss_dssp ---TTCSSCEEEECCC--------------------HHHHHHHHHHT-TCTT-SCEEEEEESSCC----HHHHHHHHHH-
T ss_pred ---hhCCCCEEEecCC--------------------HHHHHHHHHHH-HhhC-CcEEEEeCchhh----hHHHHHHHHh-
Confidence 3468999865433 22334444443 3344 589999876542 1245555554
Q ss_pred ccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCCCC
Q 006683 195 NVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGLVG 259 (635)
Q Consensus 195 ~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~~~ 259 (635)
| .++.... +.. ..+....++++++.+.++||- .+ ...+.|++.|+.+
T Consensus 129 --~-~~i~~~~-~~~-------~ee~~~~i~~l~~~G~~vVVG-~~------~~~~~A~~~Gl~~ 175 (225)
T 2pju_A 129 --N-LRLDQRS-YIT-------EEDARGQINELKANGTEAVVG-AG------LITDLAEEAGMTG 175 (225)
T ss_dssp --T-CCEEEEE-ESS-------HHHHHHHHHHHHHTTCCEEEE-SH------HHHHHHHHTTSEE
T ss_pred --C-CceEEEE-eCC-------HHHHHHHHHHHHHCCCCEEEC-CH------HHHHHHHHcCCcE
Confidence 4 5554432 221 167899999999999999886 22 2356689999865
No 167
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=80.81 E-value=11 Score=34.35 Aligned_cols=76 Identities=16% Similarity=0.241 Sum_probs=45.3
Q ss_pred hhcCCeEEEEcCCChhhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEEEE
Q 006683 93 INKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRVAA 172 (635)
Q Consensus 93 i~~~~v~aiiG~~~s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~vai 172 (635)
+.+.++.+|+-+..+.+.. +..+-+..++|+++. ..+.++.+...+-++|++
T Consensus 69 L~~~g~d~iviaCnTa~~~-~~~l~~~~~iPvi~i---------------------------~~a~~~~~~~~~~~rigv 120 (226)
T 2zsk_A 69 LERAGAELIAFAANTPHLV-FDDVQREVNVPMVSI---------------------------IDAVAEEILKRGVRKVLL 120 (226)
T ss_dssp HHHHTCSEEEESSSGGGGG-HHHHHHHCSSCBCCH---------------------------HHHHHHHHHHTTCCEEEE
T ss_pred HHHcCCCEEEECCCcHHHH-HHHHHHhCCCCEecc---------------------------HHHHHHHHHHcCCCeEEE
Confidence 3367888888766655432 344445567777642 133444444456789999
Q ss_pred EEEcCCCCCCcchHHHHHHHHhccCCeEEE
Q 006683 173 IYEDNVYGGDSGKLALLAEALQNVSSSEIQ 202 (635)
Q Consensus 173 i~~~~~~g~~~~~~~~~~~~l~~~g~~~v~ 202 (635)
+....... ...+++.+++.| +++.
T Consensus 121 laT~~T~~-----~~~y~~~l~~~g-~~v~ 144 (226)
T 2zsk_A 121 LGTKTTMT-----ADFYIKTLEEKG-LEVV 144 (226)
T ss_dssp ESSTTTTS-----CHHHHHHHHTTT-CEEE
T ss_pred EeCHHHHh-----hhHHHHHHHHCC-CEEE
Confidence 97544322 235677777778 7753
No 168
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=80.28 E-value=2.1 Score=39.36 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=24.5
Q ss_pred HHHHHHHhhcCCeEEEEcCCChhhHHHHHHhhccCCccEEe
Q 006683 86 ATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILS 126 (635)
Q Consensus 86 ~~~~~~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~ip~Is 126 (635)
+..+.+.+.+.++.+|+-+..+.+ ..+..+-+..++|+|.
T Consensus 63 l~~~~~~l~~~g~d~iviaCnTa~-~~~~~l~~~~~iPvi~ 102 (228)
T 1jfl_A 63 LIWTAKRLEECGADFIIMPCNTAH-AFVEDIRKAIKIPIIS 102 (228)
T ss_dssp HHHHHHHHHHHTCSEEECSCTGGG-GGHHHHHHHCSSCBCC
T ss_pred HHHHHHHHHHcCCCEEEEcCccHH-HHHHHHHHhCCCCEec
Confidence 333344444678998887666554 4444555566788874
No 169
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=79.50 E-value=2.5 Score=39.05 Aligned_cols=76 Identities=11% Similarity=0.020 Sum_probs=55.1
Q ss_pred cceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccEEEecccccccccc---cccccccceeeeeEEEEeCC
Q 006683 488 DGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTE---YVEFTQPYAESGFSMIVPAK 564 (635)
Q Consensus 488 ~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~---~~~fs~p~~~~~~~~~v~~~ 564 (635)
.|+--+|+.++.++.|.++++.... -..++.++.+|.+|+++..-....+... ...=..+|....+++++|++
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~~g----Sg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~lVlV~P~~ 93 (236)
T 3lr1_A 18 SGLLKVLLPPFEKKNNVKVDVIAVG----TGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYNDFVIVGPKN 93 (236)
T ss_dssp HCHHHHHHHHHHHHHTCEEEEEEEC----HHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECCEEEEECTT
T ss_pred hHHHHHHHHHHHHHhCCeEEEEEcC----hHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCcEEEEEECC
Confidence 4667789999998888886666544 4568999999999998876554433211 11123588899999999988
Q ss_pred CCC
Q 006683 565 QEE 567 (635)
Q Consensus 565 ~~~ 567 (635)
++.
T Consensus 94 ~P~ 96 (236)
T 3lr1_A 94 DPA 96 (236)
T ss_dssp CTT
T ss_pred Chh
Confidence 775
No 170
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=79.04 E-value=3 Score=38.52 Aligned_cols=76 Identities=9% Similarity=0.045 Sum_probs=54.4
Q ss_pred cceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccEEEecccccccccc---cccccccceeeeeEEEEeCC
Q 006683 488 DGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTE---YVEFTQPYAESGFSMIVPAK 564 (635)
Q Consensus 488 ~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~---~~~fs~p~~~~~~~~~v~~~ 564 (635)
.|+--+|+..+.++.|.++++.... -..++.++.+|.+|+++..-....+... ...=..||....+++++|++
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~~g----Sg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~lVlV~P~~ 93 (237)
T 3muq_A 18 SGLLDYLLPQFEKDTGYKVDVIAAG----TGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDFVIVGPKA 93 (237)
T ss_dssp HTHHHHHHHHHHHHHCCEEEEEEEC----HHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEEEEEEECTT
T ss_pred hhHHHHHHHHHHHHhCceEEEEEcC----hHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCCEEEEEeCC
Confidence 4667789999999889886666544 4568899999999998875544333211 11123688889999999988
Q ss_pred CCC
Q 006683 565 QEE 567 (635)
Q Consensus 565 ~~~ 567 (635)
++.
T Consensus 94 ~P~ 96 (237)
T 3muq_A 94 DPA 96 (237)
T ss_dssp CTT
T ss_pred Chh
Confidence 764
No 171
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=76.81 E-value=1.6 Score=41.19 Aligned_cols=41 Identities=5% Similarity=0.021 Sum_probs=27.5
Q ss_pred HHHHHHHhhcCCeEEEEcCCChhhHHHHHHhhccCCccEEee
Q 006683 86 ATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSF 127 (635)
Q Consensus 86 ~~~~~~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~ip~Is~ 127 (635)
+..+.+.+.+.++.+|+-+..+... .+..+-+..++|+|..
T Consensus 88 l~~~~~~L~~~Gad~IVIaCNTah~-~l~~lr~~~~iPvigi 128 (268)
T 3s81_A 88 LERYLHMLEDAGAECIVIPCNTAHY-WFDDLQNVAKARMISI 128 (268)
T ss_dssp HHHHHHHHHHTTCSEEECSCSGGGG-GHHHHHHHCSSEEECH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCHHH-HHHHHHHHCCCCEEcc
Confidence 3444444448899999987766544 4555556678999964
No 172
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=75.61 E-value=11 Score=33.25 Aligned_cols=69 Identities=17% Similarity=0.096 Sum_probs=47.7
Q ss_pred ceeHHHHHHHHHHC-CCcccEEEecCCCChhhHHHHHHcCcccEEEecccccccccccccccccceeeeeEEEEeCCC
Q 006683 489 GFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQ 565 (635)
Q Consensus 489 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~ 565 (635)
.+-.+++..+.++. +.++++.... ...+..+|.+|++|+++....... +.+. +.+.....+.++++++.
T Consensus 17 ~~l~~~l~~~~~~~P~i~i~i~~~~----~~~~~~~l~~g~~Dl~i~~~~~~~---~~~~-~~~l~~~~~~~v~~~~~ 86 (219)
T 3jv9_A 17 YLLPKLIVSLRRTAPKMPLMLEENY----THTLTESLKRGDVDAIIVAEPFQE---PGIV-TEPLYDEPFFVIVPKGH 86 (219)
T ss_dssp HHHHHHHHHHHHHSTTCCEEEEEEC----HHHHHHHHHHTSSSEEEEESSCCC---TTEE-EEEEEEEEEEEEEETTC
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCC----cHHHHHHHHcCCCCEEEEcCCCCC---CCee-EEEeeeceEEEEEeCCC
Confidence 34567888887776 6665554433 677999999999999987553322 2222 35778888999988764
No 173
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=75.56 E-value=9.6 Score=38.17 Aligned_cols=88 Identities=10% Similarity=0.080 Sum_probs=58.6
Q ss_pred HHHHHHHHCCCeEEEEEEEcCCCCCCc--chHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceE
Q 006683 157 CIADLARKYNWRRVAAIYEDNVYGGDS--GKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRV 234 (635)
Q Consensus 157 al~~~l~~~~w~~vaii~~~~~~g~~~--~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~v 234 (635)
.+.++++.++.+++.+|++..... . ...+.+.+.+++.| +++.....+.+.. ..+...+.++.+++.++|+
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~~--~~~g~~~~v~~~L~~~g-~~~~~~~~~~~~p----~~~~v~~~~~~~~~~~~d~ 95 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLRA--IKDGAVDKTLHYLREAG-IEVAIFDGVEPNP----KDTNVRDGLAVFRREQCDI 95 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC----CCSSHHHHHHHHHHTT-CEEEEECCCCSSC----BHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHcCCCEEEEEECcchhh--ccchHHHHHHHHHHHcC-CeEEEECCccCCC----CHHHHHHHHHHHHhcCCCE
Confidence 366777888889999998776553 4 37889999999989 7763221122221 2256788888888889999
Q ss_pred EEEecCC--hhHHHHHHHHH
Q 006683 235 FIVLQAS--LDMTIHLFTEA 252 (635)
Q Consensus 235 ii~~~~~--~~~~~~~l~~a 252 (635)
||- .+. .-++..++...
T Consensus 96 IIa-vGGGsv~D~aK~iA~~ 114 (387)
T 3bfj_A 96 IVT-VGGGSPHDCGKGIGIA 114 (387)
T ss_dssp EEE-EESHHHHHHHHHHHHH
T ss_pred EEE-eCCcchhhHHHHHHHH
Confidence 997 444 34455554443
No 174
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=74.41 E-value=5.8 Score=39.70 Aligned_cols=80 Identities=15% Similarity=0.086 Sum_probs=56.8
Q ss_pred HHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceE
Q 006683 155 MKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRV 234 (635)
Q Consensus 155 ~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~v 234 (635)
...+.++++.+|.+++.+|++..-.. ....+.+.+.+++.| +.+.....+.+.. ......+.++.+++.++|+
T Consensus 19 ~~~l~~~~~~~g~~~~liVtd~~~~~--~g~~~~v~~~L~~~g-i~~~~~~~v~~~p----~~~~v~~~~~~~~~~~~D~ 91 (383)
T 3ox4_A 19 LEKAIKDLNGSGFKNALIVSDAFMNK--SGVVKQVADLLKAQG-INSAVYDGVMPNP----TVTAVLEGLKILKDNNSDF 91 (383)
T ss_dssp HHHHHHTTTTSCCCEEEEEEEHHHHH--TTHHHHHHHHHHTTT-CEEEEEEEECSSC----BHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHcCCCEEEEEECCchhh--CchHHHHHHHHHHcC-CeEEEECCccCCC----CHHHHHHHHHHHHhcCcCE
Confidence 34566777888999999999875432 336788999999999 8775333343333 2256788888888889999
Q ss_pred EEEecCCh
Q 006683 235 FIVLQASL 242 (635)
Q Consensus 235 ii~~~~~~ 242 (635)
||- .+.+
T Consensus 92 IIa-vGGG 98 (383)
T 3ox4_A 92 VIS-LGGG 98 (383)
T ss_dssp EEE-EESH
T ss_pred EEE-eCCc
Confidence 987 5554
No 175
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=72.96 E-value=30 Score=26.58 Aligned_cols=99 Identities=18% Similarity=0.274 Sum_probs=65.6
Q ss_pred EEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHH
Q 006683 144 LIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGE 223 (635)
Q Consensus 144 ~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~ 223 (635)
+|-+..++......++.-+++.|. ++.++|++.+. .. ...-.+.+++.| +.+...+ +..||+..
T Consensus 4 ifvvfssdpeilkeivreikrqgv-rvvllysdqde---kr-rrerleefekqg-vdvrtve----------dkedfren 67 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGV-RVVLLYSDQDE---KR-RRERLEEFEKQG-VDVRTVE----------DKEDFREN 67 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCSCH---HH-HHHHHHHHHTTT-CEEEECC----------SHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHhCCe-EEEEEecCchH---HH-HHHHHHHHHHcC-Cceeeec----------cHHHHHHH
Confidence 455667777778888888888875 78888887653 22 222334677888 6654321 23788888
Q ss_pred HHhhhhc--CceEEEEec-CChhHHHHHHHHHHHcCCC
Q 006683 224 LKKVQDK--QSRVFIVLQ-ASLDMTIHLFTEANRMGLV 258 (635)
Q Consensus 224 l~~l~~~--~~~vii~~~-~~~~~~~~~l~~a~~~g~~ 258 (635)
++.+-.. +-|+++++. -+.+-...|+..|.+.|..
T Consensus 68 ireiwerypqldvvvivttddkewikdfieeakergve 105 (162)
T 2l82_A 68 IREIWERYPQLDVVVIVTTDDKEWIKDFIEEAKERGVE 105 (162)
T ss_dssp HHHHHHHCTTCCEEEEEECCCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHhCCCCcEEEEEecCcHHHHHHHHHHHHhcCcE
Confidence 8887654 445555523 3445678899999999873
No 176
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=72.75 E-value=8.8 Score=36.03 Aligned_cols=72 Identities=11% Similarity=-0.017 Sum_probs=48.0
Q ss_pred eeHHHHHHHHHHC-CCcccEEEecCCCChhhHHHHHHcCcccEEEeccccccccc-ccccccccceeeeeEEEEeCCCC
Q 006683 490 FSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRT-EYVEFTQPYAESGFSMIVPAKQE 566 (635)
Q Consensus 490 ~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~-~~~~fs~p~~~~~~~~~v~~~~~ 566 (635)
+-.+++..+.++. +.++++. . ++...++..|.+|++|+++.......++. +.+. ..|+....++++++++.+
T Consensus 41 ~l~~~l~~f~~~~P~i~v~i~--~--~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~~v~~~~~p 114 (290)
T 1twy_A 41 IMDVLAEKYNQQHPETYVAVQ--G--VGSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLAIVVNQANP 114 (290)
T ss_dssp HHHHHHHHHHHHCTTCEEEEE--E--SCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEEEEECTTCC
T ss_pred HHHHHHHHHHhhCCCceEEEE--e--cCcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEEEEECCCCC
Confidence 3457778888776 6775443 3 23678999999999999987543322111 2222 357888899999987765
No 177
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=72.45 E-value=9.2 Score=36.69 Aligned_cols=80 Identities=8% Similarity=0.170 Sum_probs=56.9
Q ss_pred eEEEEEEEc--CCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHH
Q 006683 168 RRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (635)
Q Consensus 168 ~~vaii~~~--~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~ 245 (635)
++|+++..+ ++|. ..+.+.+++.+++.| ..+..... ... .......++.+.+.++|.||+........
T Consensus 3 ~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~--~~~-----~~~~~~~i~~l~~~~vdgiIi~~~~~~~~ 72 (313)
T 3m9w_A 3 VKIGMAIDDLRLERW--QKDRDIFVKKAESLG-AKVFVQSA--NGN-----EETQMSQIENMINRGVDVLVIIPYNGQVL 72 (313)
T ss_dssp CEEEEEESCCSSSTT--HHHHHHHHHHHHHTS-CEEEEEEC--TTC-----HHHHHHHHHHHHHTTCSEEEEECSSTTSC
T ss_pred cEEEEEeCCCCChHH--HHHHHHHHHHHHHcC-CEEEEECC--CCC-----HHHHHHHHHHHHHcCCCEEEEeCCChhhh
Confidence 578888865 4676 788899999999999 87765432 111 13455778888888999999844445545
Q ss_pred HHHHHHHHHcCC
Q 006683 246 IHLFTEANRMGL 257 (635)
Q Consensus 246 ~~~l~~a~~~g~ 257 (635)
...++.+.+.|+
T Consensus 73 ~~~~~~~~~~~i 84 (313)
T 3m9w_A 73 SNVVKEAKQEGI 84 (313)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHHHHHHCCC
Confidence 667788887775
No 178
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=72.30 E-value=1.6 Score=41.45 Aligned_cols=59 Identities=7% Similarity=0.043 Sum_probs=35.4
Q ss_pred CCcccEEEecCCCChhhHHHHHHcCcccEEEeccccccccccccccc--cccee-eeeEEEEeCCC
Q 006683 503 NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFT--QPYAE-SGFSMIVPAKQ 565 (635)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~fs--~p~~~-~~~~~~v~~~~ 565 (635)
|+++++ .. . +++.++..|.+|++|+++.+......+.+.+.+. .++.. ....+++++++
T Consensus 37 Gl~ve~--~~-~-~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~~ 98 (280)
T 1zbm_A 37 WLEIEH--VI-E-DIETLNRKAFNAEYEVTAISAHAYALLDDKYRILSAGASVGDGYGPVVVAKSE 98 (280)
T ss_dssp SCEEEE--EE-C-CHHHHHHHGGGTCCSEEEEEHHHHTTSTTTEEECSSCCEEESSCCCEEEESSC
T ss_pred CceEEE--Ee-C-CHHHHHHHHHcCCCCEEEECHHHHHHhcCCCcEEeeccccCCCeeEEEEEcCc
Confidence 667555 33 2 4999999999999999886444333333444443 23333 33445666654
No 179
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=71.77 E-value=5.1 Score=36.11 Aligned_cols=74 Identities=5% Similarity=-0.065 Sum_probs=48.2
Q ss_pred eeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCc-ccEEEecccccccc---ccccc--ccccceeeeeEEEEeC
Q 006683 490 FSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKT-YDAAVGDLTILGNR---TEYVE--FTQPYAESGFSMIVPA 563 (635)
Q Consensus 490 ~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~-~D~~~~~~~~~~~r---~~~~~--fs~p~~~~~~~~~v~~ 563 (635)
+--++++.+.++-|.++++... +-..++..|.+|+ +|+++..-....++ ...+. -..|+....+++++++
T Consensus 13 ~l~~~~~~F~~~p~i~v~~~~~----~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~ 88 (231)
T 1atg_A 13 TLEQLAGQFAKQTGHAVVISSG----SSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLVLWSAK 88 (231)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEE----CHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEEEEESS
T ss_pred HHHHHHHHHHhccCCeEEEEEC----CcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeeeEEEEEcC
Confidence 3456778887777888665432 3577899999998 99987633221111 11111 2468888999999988
Q ss_pred CCCC
Q 006683 564 KQEE 567 (635)
Q Consensus 564 ~~~~ 567 (635)
+.+.
T Consensus 89 ~~~~ 92 (231)
T 1atg_A 89 PGLV 92 (231)
T ss_dssp TTTS
T ss_pred CCCC
Confidence 7654
No 180
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=71.75 E-value=5.4 Score=31.22 Aligned_cols=41 Identities=7% Similarity=-0.046 Sum_probs=29.2
Q ss_pred HHHHHhhhhhcccCCCCCCCcccccchhhHhHHHHhhccC-CCCCC
Q 006683 590 YTMFIVWLLEHQSNPEFRGTLKDQISNILWFAFSTIFFSH-SEYPL 634 (635)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~q~-~~~~~ 634 (635)
+.+.+++.+|+..+. ....++.+++||++.++..-| |+..|
T Consensus 21 ~~a~~~~~~E~~~~~----~~~~~~~~a~y~~~~T~tTvGyGDi~P 62 (103)
T 2k1e_A 21 EASKKAVEAERGAPG----AALISYPDAIWWSVETATTVGYGDRYP 62 (103)
T ss_dssp HHHHHHHHHHTTSTT----CCCCCGGGTTTTTTGGGGCCSCCSSCC
T ss_pred HHHHhhhhhccCCCC----cccccHHHHHHHHHHHHhcccCCCCCC
Confidence 345667778876432 333479999999999999998 66554
No 181
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=70.25 E-value=2.7 Score=40.03 Aligned_cols=36 Identities=8% Similarity=0.182 Sum_probs=21.8
Q ss_pred CCeEEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEE
Q 006683 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQI 75 (635)
Q Consensus 32 ~~~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~ 75 (635)
.+.|+|.+-..+ ...++...++..+..|+.+|++..
T Consensus 36 ~~~i~i~GSss~--------~p~~~~~a~~f~~~~p~v~v~~~~ 71 (279)
T 4gd5_A 36 TNSVSISGSTSV--------GPVMEAEAEAFKTKKPDVSIEINQ 71 (279)
T ss_dssp -CEEEEEECTTT--------HHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred CCeEEEEEeCcH--------HHHHHHHHHHHHHHCCCceEEEee
Confidence 567887642221 234566667777776788888754
No 182
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=70.06 E-value=6.3 Score=38.24 Aligned_cols=77 Identities=14% Similarity=0.176 Sum_probs=46.9
Q ss_pred eeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccEEEeccc-cccccccccc-cc--ccceeee--eEEEEeC
Q 006683 490 FSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLT-ILGNRTEYVE-FT--QPYAESG--FSMIVPA 563 (635)
Q Consensus 490 ~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~-~~~~r~~~~~-fs--~p~~~~~--~~~~v~~ 563 (635)
+.+..-+-+.++.|++++++..+ +.-..++..|.+|++|+++++.. ....|.+..+ |. .++...+ ..+++++
T Consensus 30 ~~~A~~~G~~~~~Gl~V~~~~~~--~g~~~~~~al~~G~~D~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~i~v~~ 107 (321)
T 2x7q_A 30 LFFAQQQGYYKAHDLSIEFVKVP--EGSGRLINLLNSNEVDIAIGLTEAFIADIAKGNENIHVLDTYVKSPLLWAVSTGS 107 (321)
T ss_dssp HHHHHHTTHHHHTTCCEEEEECT--TCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTCTTEEEEEEEECSCCEEEEEEES
T ss_pred HHHHHHCCcHHHCCceEEEEECC--CCHHHHHHHHHcCCccEEecCcHHHHHHHHCCCCcEEEEEEecCCCcceEEEECC
Confidence 33444444556789886555433 21224799999999999987664 3445555444 44 3455444 3688888
Q ss_pred CC-CCC
Q 006683 564 KQ-EES 568 (635)
Q Consensus 564 ~~-~~~ 568 (635)
++ +..
T Consensus 108 ds~~i~ 113 (321)
T 2x7q_A 108 NRDDVT 113 (321)
T ss_dssp SCTTCS
T ss_pred CCCCCC
Confidence 76 543
No 183
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=69.79 E-value=8.3 Score=38.17 Aligned_cols=62 Identities=11% Similarity=0.011 Sum_probs=47.1
Q ss_pred HHHHHHHHHHCCCcccEEEecCC--CChhhHHHHHHcCcccEEEeccccccccccccc-cc-ccce
Q 006683 492 IELFRLVVDHLNYDLPYEFVPHD--GVYDDLINGVYDKTYDAAVGDLTILGNRTEYVE-FT-QPYA 553 (635)
Q Consensus 492 ~dl~~~la~~l~~~~~~~~~~~~--~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~-fs-~p~~ 553 (635)
-.+.+++.++.|-++++.+.+.. |...+++..+..|.+||++........+...+. |+ .||.
T Consensus 53 ~~fa~~v~e~t~G~v~i~v~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~~lP~~ 118 (361)
T 2zzv_A 53 QKFTERVKELTDGQLEVQPFPAGAVVGTFDMFDAVKTGVLDGMNPFTLYWAGRMPVTAFLSSYALG 118 (361)
T ss_dssp HHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEECBGGGGTTTCGGGGGSSCCTTS
T ss_pred HHHHHHHHHhcCCeEEEEEeCCCcccCHHHHHHHHHcCceeEEEeccccccccCcHHHHHhcCCCC
Confidence 35778888899877778777642 468899999999999999888777776666555 33 5664
No 184
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=67.72 E-value=17 Score=35.05 Aligned_cols=82 Identities=11% Similarity=0.009 Sum_probs=51.6
Q ss_pred cccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHH--HHHcCccc---EEEecc--cccccccccccc------cc--
Q 006683 486 RYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLIN--GVYDKTYD---AAVGDL--TILGNRTEYVEF------TQ-- 550 (635)
Q Consensus 486 ~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~--~l~~g~~D---~~~~~~--~~~~~r~~~~~f------s~-- 550 (635)
...-+.-.|.+.|.+++|.++.++-.+ | ..|.++ .+.+++.| +.++.. .+++.+.+.+.| +.
T Consensus 30 ~~D~~aR~la~~l~~~lg~~vvV~N~p--G-a~g~ig~~~v~~a~~DGytl~~~~~~~~~~~~~~~~~~yd~~~df~pv~ 106 (312)
T 2f5x_A 30 PTDNVARSLAESMRPTLGETVVVENKG--G-AGGTIGTTQVARAQPDGYSILLMHAGFSTAPSLYKNPGYEPYTSFEPIG 106 (312)
T ss_dssp HHHHHHHHHHHHHHHHHSSCEEEEECC--C-GGGHHHHHHHHTSCSSSSEEEEEETHHHHGGGTCSCCSSCTTTSEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecC--C-hHHHHHHHHHHhCCCCCcEEEEecCHHHHHHHHcCCCCCCcccccceee
Confidence 344455577788888899885544443 3 667774 57888888 766543 345555444433 21
Q ss_pred cceeeeeEEEEeCCCCCCcc
Q 006683 551 PYAESGFSMIVPAKQEESTW 570 (635)
Q Consensus 551 p~~~~~~~~~v~~~~~~~~~ 570 (635)
.+......++|+++.+.+.+
T Consensus 107 ~~~~~~~~lvv~~ds~~~sl 126 (312)
T 2f5x_A 107 LVVDVPMTIIARGDFPPNNI 126 (312)
T ss_dssp EEEEEEEEEEECTTCSCCSH
T ss_pred ecccCcEEEEEeCCCCCCCH
Confidence 24567788889888776443
No 185
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=67.15 E-value=9.5 Score=36.37 Aligned_cols=81 Identities=14% Similarity=0.037 Sum_probs=55.2
Q ss_pred eEEEEEEEcC--CCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHH
Q 006683 168 RRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (635)
Q Consensus 168 ~~vaii~~~~--~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~ 245 (635)
++|++|..+. +|. ..+.+.+++.+++.| ..+.... .... + .......++.+.+.++|.||+........
T Consensus 5 ~~I~~i~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~--~~~~---~-~~~~~~~i~~l~~~~vdgiIi~~~~~~~~ 75 (305)
T 3g1w_A 5 ETYMMITFQSGMDYW--KRCLKGFEDAAQALN-VTVEYRG--AAQY---D-IQEQITVLEQAIAKNPAGIAISAIDPVEL 75 (305)
T ss_dssp CEEEEEESSTTSTHH--HHHHHHHHHHHHHHT-CEEEEEE--CSSS---C-HHHHHHHHHHHHHHCCSEEEECCSSTTTT
T ss_pred ceEEEEEccCCChHH--HHHHHHHHHHHHHcC-CEEEEeC--CCcC---C-HHHHHHHHHHHHHhCCCEEEEcCCCHHHH
Confidence 5788888654 455 677888999999999 8776532 1111 1 14456778888888999999834444445
Q ss_pred HHHHHHHHHcCC
Q 006683 246 IHLFTEANRMGL 257 (635)
Q Consensus 246 ~~~l~~a~~~g~ 257 (635)
...++++.+.|+
T Consensus 76 ~~~~~~~~~~~i 87 (305)
T 3g1w_A 76 TDTINKAVDAGI 87 (305)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 667888888776
No 186
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=67.14 E-value=27 Score=33.08 Aligned_cols=40 Identities=5% Similarity=0.128 Sum_probs=27.2
Q ss_pred HHHHHhhcCCeEEEEcCCChhhHHHHHHhhccCCccEEee
Q 006683 88 AAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSF 127 (635)
Q Consensus 88 ~~~~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~ip~Is~ 127 (635)
.+..++.+.++.+|+-+..+.++..+..+-+..++|+|..
T Consensus 75 i~~~ll~~~g~d~IviaCNTas~~~l~~lr~~~~iPVigi 114 (285)
T 2jfn_A 75 IVTAVQERYPLALAVVACNTASTVSLPALREKFDFPVVGV 114 (285)
T ss_dssp HHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEECC
T ss_pred HHHHHHHhCCCCEEEEECccccHHHHHHHHHhCCCCEEeh
Confidence 3344554478998887666655456666667789999964
No 187
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=65.57 E-value=13 Score=33.35 Aligned_cols=70 Identities=10% Similarity=0.023 Sum_probs=48.1
Q ss_pred ceeHHHHHHHHHHC-CCcccEEEecCCCChhhHHHHHHcCcccEEEecccccccccccccccccceeeeeEEEEeCCCC
Q 006683 489 GFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (635)
Q Consensus 489 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (635)
.+-..++..+.++. +.+ +.+.. ++...++.+|.+|++|+++..... ....+.+ .|.....++++++++.+
T Consensus 21 ~~lp~~l~~f~~~~P~v~--l~l~~--~~~~~l~~~L~~g~iDl~i~~~~~---~~~~l~~-~~l~~~~~~~v~~~~hp 91 (218)
T 2y7p_A 21 YFMPPLMEALAQRAPHIQ--ISTLR--PNAGNLKEDMESGAVDLALGLLPE---LQTGFFQ-RRLFRHRYVCMFRKDHP 91 (218)
T ss_dssp HHHHHHHHHHHHHCTTCE--EEEEC--CCTTTHHHHHHHTSSCEEEECCTT---CCTTEEE-EEEEEECEEEEEETTCS
T ss_pred HHHHHHHHHHHHHCCCCE--EEEEe--CCcccHHHHHhCCCceEEEecCCC---CCcceeE-EEeeeccEEEEEcCCCC
Confidence 45567888888776 556 44444 235679999999999999864321 1223333 57888899999988754
No 188
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=65.51 E-value=16 Score=34.44 Aligned_cols=81 Identities=6% Similarity=0.072 Sum_probs=56.8
Q ss_pred CeEEEEEEEcC--CCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhH
Q 006683 167 WRRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDM 244 (635)
Q Consensus 167 w~~vaii~~~~--~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~ 244 (635)
-++|+++..+. +|. ..+.+.+.+.+++.| ..+..... .. + .......++.+.+.++|.||+...+...
T Consensus 5 ~~~Ig~i~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~--~~----~-~~~~~~~~~~l~~~~vdgiIi~~~~~~~ 74 (291)
T 3l49_A 5 GKTIGITAIGTDHDWD--LKAYQAQIAEIERLG-GTAIALDA--GR----N-DQTQVSQIQTLIAQKPDAIIEQLGNLDV 74 (291)
T ss_dssp TCEEEEEESCCSSHHH--HHHHHHHHHHHHHTT-CEEEEEEC--TT----C-HHHHHHHHHHHHHHCCSEEEEESSCHHH
T ss_pred CcEEEEEeCCCCChHH--HHHHHHHHHHHHHcC-CEEEEEcC--CC----C-HHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 35788888753 354 567888999999999 87765421 11 1 1345677888888899999984455556
Q ss_pred HHHHHHHHHHcCC
Q 006683 245 TIHLFTEANRMGL 257 (635)
Q Consensus 245 ~~~~l~~a~~~g~ 257 (635)
....++.+.+.|+
T Consensus 75 ~~~~~~~~~~~~i 87 (291)
T 3l49_A 75 LNPWLQKINDAGI 87 (291)
T ss_dssp HHHHHHHHHHTTC
T ss_pred hHHHHHHHHHCCC
Confidence 6777888888776
No 189
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=65.39 E-value=9.7 Score=36.36 Aligned_cols=75 Identities=13% Similarity=0.096 Sum_probs=50.0
Q ss_pred cceeHHHHHHHHHH---C---CCcccEEEecCCCChhhHHHHHHcCcccEEEeccccccccc--cccccc-c-cceeeee
Q 006683 488 DGFSIELFRLVVDH---L---NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRT--EYVEFT-Q-PYAESGF 557 (635)
Q Consensus 488 ~G~~~dl~~~la~~---l---~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~--~~~~fs-~-p~~~~~~ 557 (635)
..+-.++++.+.++ . +.++++... +-..++.+|.+|++|+++..-....+.. +.+.+. . ++....+
T Consensus 32 ~~~lp~ll~~F~~~~~~~~~P~v~v~l~~~----~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~~l~~d~l 107 (294)
T 3cvg_A 32 SGLVKELADAFIKSKVDSGSAPFKVAWYKS----DTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYAFRDHF 107 (294)
T ss_dssp HTHHHHHHHHHHHHHHSCC---CEEEEEEC----CHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEEEEEEE
T ss_pred HHHHHHHHHHHHhhhcccCCCCeEEEEEeC----CHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceeeeEEeccE
Confidence 34567899999988 6 777555432 3778999999999999886433222111 112232 4 7888899
Q ss_pred EEEEeCCCC
Q 006683 558 SMIVPAKQE 566 (635)
Q Consensus 558 ~~~v~~~~~ 566 (635)
+++++++.+
T Consensus 108 vlv~~~~hp 116 (294)
T 3cvg_A 108 MLIGPPSNP 116 (294)
T ss_dssp EEEECTTCT
T ss_pred EEEecCCCh
Confidence 999988765
No 190
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=65.08 E-value=69 Score=32.11 Aligned_cols=94 Identities=16% Similarity=0.088 Sum_probs=63.1
Q ss_pred eEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCCh-----
Q 006683 168 RRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL----- 242 (635)
Q Consensus 168 ~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~----- 242 (635)
++|.|+|.+. ||.-+.+++.+.+.+.+.| ++++......... ++...++..+. +++.|++ .+..
T Consensus 266 ~~v~I~Y~S~-yGnTe~mA~~ia~gl~~~G-v~~~~~~~~d~~~------~~~s~i~~~i~--~~~~ivl-GspT~~~~~ 334 (410)
T 4dik_A 266 GKVTVIYDSM-YGFVENVMKKAIDSLKEKG-FTPVVYKFSDEER------PAISEILKDIP--DSEALIF-GVSTYEAEI 334 (410)
T ss_dssp TEEEEEEECS-SSHHHHHHHHHHHHHHHTT-CEEEEEEECSSCC------CCHHHHHHHST--TCSEEEE-EECCTTSSS
T ss_pred cceeeEEecc-cChHHHHHHHHHHHHHhcC-CceEEEEeccCCC------CCHHHHHHHHH--hCCeEEE-EeCCcCCcC
Confidence 4799998764 4521556888999999999 8876544333332 34667777776 4666776 5443
Q ss_pred -hHHHHHHHHHHHcCCCCCCeEEEeeCchhh
Q 006683 243 -DMTIHLFTEANRMGLVGKDSVWIVTNTVAN 272 (635)
Q Consensus 243 -~~~~~~l~~a~~~g~~~~~~~~i~~~~~~~ 272 (635)
.....++.........++....+++.+|..
T Consensus 335 ~p~~~~~l~~l~~~~~~~K~~~~FGSyGWsg 365 (410)
T 4dik_A 335 HPLMRFTLLEIIDKANYEKPVLVFGVHGWAP 365 (410)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_pred CHHHHHHHHHHHhcccCCCEEEEEECCCCCc
Confidence 355667778888777777666777777753
No 191
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=64.90 E-value=56 Score=30.51 Aligned_cols=118 Identities=9% Similarity=0.110 Sum_probs=74.0
Q ss_pred EEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhc-CCeEEEEcCCChhhHHHH
Q 006683 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAVV 113 (635)
Q Consensus 35 i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~v 113 (635)
=+||++..........-..|++.++++.+-. .... +.....+...+.+.+.+++.. ..+.+|+.. +...+..+
T Consensus 127 ~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~---~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~A~g~ 200 (289)
T 3k9c_A 127 RNIAHIDGADAPGGADRRAGFLAAMDRHGLS---ASAT--VVTGGTTETEGAEGMHTLLEMPTPPTAVVAF-NDRCATGV 200 (289)
T ss_dssp CSEEEECCTTSTTHHHHHHHHHHHHHHTTCG---GGEE--EECCCSSHHHHHHHHHHHHTSSSCCSEEEES-SHHHHHHH
T ss_pred CcEEEEeCCCCccHHHHHHHHHHHHHHCCCC---CCcc--EEECCCCHHHHHHHHHHHHcCCCCCCEEEEC-ChHHHHHH
Confidence 3688887655434556678888888875432 1122 334556788888888998853 578899974 44445555
Q ss_pred HHhhccCC------ccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH
Q 006683 114 AEIASRVQ------VPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA 162 (635)
Q Consensus 114 ~~~~~~~~------ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l 162 (635)
...+...+ +.++++... .+.....|-+-.+..+...++...+++|
T Consensus 201 ~~al~~~g~~vP~di~vig~D~~----~~~~~~~p~lttv~~~~~~~g~~a~~~l 251 (289)
T 3k9c_A 201 LDLLVRSGRDVPADISVVGYDDS----RLARIPHVQMTTISQDATHMAEAAVDGA 251 (289)
T ss_dssp HHHHHHTTCCTTTTCEEEEEECC----TTTTCTTTCCEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCceEEEEECCH----HHHhcCCCCcceEecCHHHHHHHHHHHH
Confidence 55555443 347777644 2333333555667777777888777776
No 192
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=64.81 E-value=37 Score=31.73 Aligned_cols=122 Identities=14% Similarity=0.131 Sum_probs=63.9
Q ss_pred HHHHhhcCCeEEEEcCCChhhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHH-HHHCCC
Q 006683 89 AQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADL-ARKYNW 167 (635)
Q Consensus 89 ~~~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~-l~~~~w 167 (635)
+..+. +.++.+|+-+..+.++..+..+-+..++|+|... .+.++. ++..+-
T Consensus 58 ~~~L~-~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi~---------------------------ep~~~~A~~~~~~ 109 (267)
T 2gzm_A 58 TEHLL-DLNIKMLVIACNTATAVVLEEMQKQLPIPVVGVI---------------------------HPGSRTALKVTNT 109 (267)
T ss_dssp HHHHH-TTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESH---------------------------HHHHHHHHHHCSS
T ss_pred HHHHH-HCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeec---------------------------HHHHHHHHHccCC
Confidence 33444 7899999876666554456666677899998631 111111 223355
Q ss_pred eEEEEEEEcCCCCCCcchHHHHHHHHhcc--CCeEEEEEee------eCCCCCC-CCchHHHHHHHHhhhhcCceEEEEe
Q 006683 168 RRVAAIYEDNVYGGDSGKLALLAEALQNV--SSSEIQSRLV------LPPISSI-SDPKEAVRGELKKVQDKQSRVFIVL 238 (635)
Q Consensus 168 ~~vaii~~~~~~g~~~~~~~~~~~~l~~~--g~~~v~~~~~------~~~~~~~-~d~~~~~~~~l~~l~~~~~~vii~~ 238 (635)
++|+++......- ...+++.+++. | +++..... +..+... ......+.+.++.+.+.++|+||+
T Consensus 110 ~rIgVlaT~~T~~-----~~~y~~~l~~~~~g-~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~~~d~iVL- 182 (267)
T 2gzm_A 110 YHVGIIGTIGTVK-----SGAYEEALKSINNR-VMVESLACPPFVELVESGNFESEMAYEVVRETLQPLKNTDIDTLIL- 182 (267)
T ss_dssp CEEEEEECHHHHH-----HTHHHHHHHHHCTT-CEEEEEECTTHHHHHHTTCSSSHHHHHHHHHHHHHHHHSCCSEEEE-
T ss_pred CEEEEEEChHHhc-----cHHHHHHHHHhCCC-CEEeccCCHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhcCCCEEEE-
Confidence 6777776432211 12344444444 4 55442110 0001000 001234566677777778999999
Q ss_pred cCChhHH
Q 006683 239 QASLDMT 245 (635)
Q Consensus 239 ~~~~~~~ 245 (635)
.|..-..
T Consensus 183 GCTh~p~ 189 (267)
T 2gzm_A 183 GCTHYPI 189 (267)
T ss_dssp CSTTGGG
T ss_pred cccChHH
Confidence 7765443
No 193
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=64.04 E-value=20 Score=33.82 Aligned_cols=88 Identities=11% Similarity=0.066 Sum_probs=55.9
Q ss_pred HHCCCeEEEEEEEcC---CCCCCcchHHHHHHHHhcc-CCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEe
Q 006683 163 RKYNWRRVAAIYEDN---VYGGDSGKLALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVL 238 (635)
Q Consensus 163 ~~~~w~~vaii~~~~---~~g~~~~~~~~~~~~l~~~-g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~ 238 (635)
+.-+-++|+++..+. +|. ..+.+.+++.+++. | ..+.......... ........++.+...++|.||+.
T Consensus 4 ~~~~~~~Igvi~~~~~~~~~~--~~~~~gi~~~a~~~~g-~~~~~~~~~~~~~----~~~~~~~~i~~l~~~~vdgiii~ 76 (304)
T 3gbv_A 4 ASNKKYTFACLLPKHLEGEYW--TDVQKGIREAVTTYSD-FNISANITHYDPY----DYNSFVATSQAVIEEQPDGVMFA 76 (304)
T ss_dssp ---CCEEEEEEEECCCTTSHH--HHHHHHHHHHHHHTGG-GCEEEEEEEECSS----CHHHHHHHHHHHHTTCCSEEEEC
T ss_pred ccCCcceEEEEecCCCCchHH--HHHHHHHHHHHHHHHh-CCeEEEEEcCCCC----CHHHHHHHHHHHHhcCCCEEEEC
Confidence 334557899888763 355 67778888888887 6 5555443322111 11445677888888899999983
Q ss_pred cCChhHHHHHHHHHHHcCC
Q 006683 239 QASLDMTIHLFTEANRMGL 257 (635)
Q Consensus 239 ~~~~~~~~~~l~~a~~~g~ 257 (635)
..........++.+.+.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~i 95 (304)
T 3gbv_A 77 PTVPQYTKGFTDALNELGI 95 (304)
T ss_dssp CSSGGGTHHHHHHHHHHTC
T ss_pred CCChHHHHHHHHHHHHCCC
Confidence 4444455667777877776
No 194
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=63.99 E-value=11 Score=37.53 Aligned_cols=74 Identities=8% Similarity=0.070 Sum_probs=47.3
Q ss_pred HHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEE
Q 006683 157 CIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFI 236 (635)
Q Consensus 157 al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii 236 (635)
.+.++++.+| +++.+|++...+ +...+.+.+.+++ | +.+.+. .+.... ..+...+.++.+++.++|+||
T Consensus 43 ~l~~~l~~~g-~r~liVtd~~~~---~~~~~~v~~~L~~-g-~~~~~~-~~~~~p----~~~~v~~~~~~~~~~~~d~II 111 (387)
T 3uhj_A 43 KLAAYLAPLG-KRALVLIDRVLF---DALSERIGKSCGD-S-LDIRFE-RFGGEC----CTSEIERVRKVAIEHGSDILV 111 (387)
T ss_dssp TTHHHHGGGC-SEEEEEECTTTH---HHHHHHC-------C-CEEEEE-ECCSSC----SHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHcC-CEEEEEECchHH---HHHHHHHHHHHHc-C-CCeEEE-EcCCCC----CHHHHHHHHHHHhhcCCCEEE
Confidence 4567788888 999999877654 3356778888888 8 887443 344333 226677888888888999998
Q ss_pred EecCCh
Q 006683 237 VLQASL 242 (635)
Q Consensus 237 ~~~~~~ 242 (635)
- .+.+
T Consensus 112 a-vGGG 116 (387)
T 3uhj_A 112 G-VGGG 116 (387)
T ss_dssp E-ESSH
T ss_pred E-eCCc
Confidence 7 5554
No 195
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=63.62 E-value=10 Score=37.85 Aligned_cols=89 Identities=10% Similarity=0.126 Sum_probs=58.7
Q ss_pred HHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEE
Q 006683 157 CIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFI 236 (635)
Q Consensus 157 al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii 236 (635)
.+.++++.++.+++.+|++..... ....+.+.+.+++.| +.+.....+.+.. ..+...+.++.+++.++|+||
T Consensus 21 ~l~~~l~~~g~~~~livtd~~~~~--~g~~~~v~~~L~~~g-~~~~~~~~~~~~p----~~~~v~~~~~~~~~~~~d~II 93 (386)
T 1rrm_A 21 ALTDEVKRRGYQKALIVTDKTLVQ--CGVVAKVTDKMDAAG-LAWAIYDGVVPNP----TITVVKEGLGVFQNSGADYLI 93 (386)
T ss_dssp GHHHHHHHHTCCEEEEECBHHHHH--TTHHHHHHHHHHHTT-CEEEEECBCCSSC----BHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHcCCCEEEEEECcchhh--chHHHHHHHHHHHcC-CeEEEECCccCCC----CHHHHHHHHHHHHhcCcCEEE
Confidence 356677777888999998665432 336788899998888 7764222222222 225678888888888999999
Q ss_pred EecCC--hhHHHHHHHHHH
Q 006683 237 VLQAS--LDMTIHLFTEAN 253 (635)
Q Consensus 237 ~~~~~--~~~~~~~l~~a~ 253 (635)
- .+. .-++..++....
T Consensus 94 a-vGGGsv~D~aK~iA~~~ 111 (386)
T 1rrm_A 94 A-IGGGSPQDTCKAIGIIS 111 (386)
T ss_dssp E-EESHHHHHHHHHHHHHH
T ss_pred E-eCChHHHHHHHHHHHHH
Confidence 7 444 345555554444
No 196
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=62.73 E-value=17 Score=34.81 Aligned_cols=77 Identities=12% Similarity=0.048 Sum_probs=47.1
Q ss_pred HHHHHHHHHH-CCCcccEEEecCCCChhhHHHHHHcCcccEEEecccccc-c------------ccccccccccceeeee
Q 006683 492 IELFRLVVDH-LNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILG-N------------RTEYVEFTQPYAESGF 557 (635)
Q Consensus 492 ~dl~~~la~~-l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~-~------------r~~~~~fs~p~~~~~~ 557 (635)
..+.+.+.++ .|.+ +++.+ .+....++..|.+|++|+++....... . +.+.+.+-.++.....
T Consensus 37 ~~la~~~~~~~~g~~--v~v~~-~~~~~~~~~~l~~g~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 113 (314)
T 1us5_A 37 TGIAKLVNDANVGIR--ANARS-TGGSVANINAINAGEFEMALAQNDIAYYAYQGCCIPAFEGKPVKTIRALAALYPEVV 113 (314)
T ss_dssp HHHHHHHHHHTSSEE--EEEEC-CSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCSSTTTTTCCCTTEEEEEEEEEEEE
T ss_pred HHHHHHHHhcCCCce--EEEEe-cCcHHHHHHHHHcCCCcEEEEccHhHHHHhcCCCCCCCCCCCccchhehhhcCcceE
Confidence 3455556654 5766 44444 234678899999999999886543211 0 1122333336777788
Q ss_pred EEEEeCCCCCCcce
Q 006683 558 SMIVPAKQEESTWM 571 (635)
Q Consensus 558 ~~~v~~~~~~~~~~ 571 (635)
.++++++.+...+.
T Consensus 114 ~lvv~~~~~i~sl~ 127 (314)
T 1us5_A 114 HVVARKDAGIRTVA 127 (314)
T ss_dssp EEEEETTSSCSSGG
T ss_pred EEEEECCCCCCcHH
Confidence 89999876654333
No 197
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=62.71 E-value=12 Score=30.36 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=28.9
Q ss_pred HHHHHhhhhhcccCCCCCCCcccccchhhHhHHHHhhccC-CCCCC
Q 006683 590 YTMFIVWLLEHQSNPEFRGTLKDQISNILWFAFSTIFFSH-SEYPL 634 (635)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~q~-~~~~~ 634 (635)
+.+.++|.+|+..+ ++...++.+++||++.++..-| |+..|
T Consensus 42 ~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P 83 (122)
T 2ih3_C 42 AGSYLAVLAERGAP----GAQLITYPRALWWACETATTVAYGDLYP 83 (122)
T ss_dssp HHHHHHHHHHTTST----TCCCCSHHHHHHHHHHHHTTCCCSSSCC
T ss_pred HHHHhhheeeecCC----CCccCccccchhheeeeeeeeecCCCCC
Confidence 33556677777432 2334579999999999999998 66554
No 198
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=62.33 E-value=4.8 Score=37.00 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=33.8
Q ss_pred HHhhcCCeEEEEcCCChhhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCCeEE
Q 006683 91 ELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNWRRV 170 (635)
Q Consensus 91 ~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w~~v 170 (635)
+.+.+.++.+|+-+..+.+. .+..+-+..++|+|+. ..+.++.+...+-++|
T Consensus 70 ~~L~~~g~~~iviaCNTa~~-~~~~l~~~~~iPvi~i---------------------------~~~~~~~a~~~~~~rV 121 (231)
T 3ojc_A 70 ISLKHAGAEVIVVCTNTMHK-VADDIEAACGLPLLHI---------------------------ADATAVQIKQQGIDKI 121 (231)
T ss_dssp HHHHHHTCCEEEECSSGGGG-GHHHHHHHHCSCBCCH---------------------------HHHHHHHHHHTTCCEE
T ss_pred HHHHhcCCCEEEEeCCchHH-HHHHHHHhCCCCEecc---------------------------HHHHHHHHHHcCCCEE
Confidence 33336788888876655332 2233444456777632 2334444444567899
Q ss_pred EEEEEcC
Q 006683 171 AAIYEDN 177 (635)
Q Consensus 171 aii~~~~ 177 (635)
+++....
T Consensus 122 gvLaT~~ 128 (231)
T 3ojc_A 122 GLLGTRY 128 (231)
T ss_dssp EEESCHH
T ss_pred EEEcCHH
Confidence 9997654
No 199
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=61.40 E-value=23 Score=33.51 Aligned_cols=79 Identities=9% Similarity=0.148 Sum_probs=55.8
Q ss_pred eEEEEEEEcC--CCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHH
Q 006683 168 RRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (635)
Q Consensus 168 ~~vaii~~~~--~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~ 245 (635)
.+|+++..+. +|. ..+.+.+.+.+++.| ..+..... .+ .......++.+.+.++|.||+...+....
T Consensus 3 ~~Ig~i~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~--~~------~~~~~~~i~~l~~~~vdgiii~~~~~~~~ 71 (306)
T 8abp_A 3 LKLGFLVKQPEEPWF--QTEWKFADKAGKDLG-FEVIKIAV--PD------GEKTLNAIDSLAASGAKGFVICTPDPKLG 71 (306)
T ss_dssp EEEEEEESCTTSHHH--HHHHHHHHHHHHHHT-EEEEEEEC--CS------HHHHHHHHHHHHHTTCCEEEEECSCGGGH
T ss_pred eEEEEEeCCCCchHH--HHHHHHHHHHHHHcC-CEEEEeCC--CC------HHHHHHHHHHHHHcCCCEEEEeCCCchhh
Confidence 3688887653 355 677888999999999 87764322 11 14456778888888999999845556666
Q ss_pred HHHHHHHHHcCC
Q 006683 246 IHLFTEANRMGL 257 (635)
Q Consensus 246 ~~~l~~a~~~g~ 257 (635)
...++.+.+.|+
T Consensus 72 ~~~~~~~~~~~i 83 (306)
T 8abp_A 72 SAIVAKARGYDM 83 (306)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 677888888776
No 200
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=61.35 E-value=29 Score=32.45 Aligned_cols=72 Identities=10% Similarity=-0.034 Sum_probs=47.9
Q ss_pred eHHHHHHHHHHC-CCcccEEEecCCCChhhHHHHHHcCcccEEEecccccc-ccccccc-ccccceeeeeEEEEeCCCC
Q 006683 491 SIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILG-NRTEYVE-FTQPYAESGFSMIVPAKQE 566 (635)
Q Consensus 491 ~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~-~r~~~~~-fs~p~~~~~~~~~v~~~~~ 566 (635)
.-.++..+.++. +.++++.... -...+.+|.+|++|+++....... +..+.-+ ...|+...+++++++++.+
T Consensus 18 ~~~~~~~F~~~~P~v~i~v~~~g----S~~gi~~l~~g~~Dig~~~~~~~~~~~~~~~~l~~~~ia~d~lvvvv~~~~~ 92 (265)
T 4exl_A 18 VEVAADEFGTIHVGKTVNVQGGG----SGTGLSQVQSGAVDIGNSDVFAEEKDGIDASALVDHKVAVAGLALIVNKEVD 92 (265)
T ss_dssp HHHHHHHHHHHSTTCEEEEEEEC----HHHHHHHHHTTSSSEEEESSCGGGSTTCCGGGEECCEEEEEEEEEEECTTCC
T ss_pred HHHHHHHHHHHCCCceEEEeeCC----cHHHHHHHHcCCCccccccCCcchhhcccccCceEeeEEEEEEEEEECCCCc
Confidence 346667777766 6775554432 567899999999999887544332 1111122 2468999999999987655
No 201
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=61.09 E-value=20 Score=36.04 Aligned_cols=87 Identities=9% Similarity=0.085 Sum_probs=56.1
Q ss_pred HHHHHHHHCCCeEEEEEEEcCCCCCCc-chHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEE
Q 006683 157 CIADLARKYNWRRVAAIYEDNVYGGDS-GKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVF 235 (635)
Q Consensus 157 al~~~l~~~~w~~vaii~~~~~~g~~~-~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vi 235 (635)
.+.++++.++.+++.+|+++.... . ...+.+.+.+++.| +.+. .++.....+ ......+.++.+++.++|+|
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~--~~g~~~~v~~~L~~~g-~~~~---~f~~v~~~p-~~~~v~~~~~~~~~~~~D~I 105 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIK--KNGVYDQVVDSLKKHG-IEWV---EVSGVKPNP-VLSKVHEAVEVAKKEKVEAV 105 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHH--HSSHHHHHHHHHHHTT-CEEE---EECCCCSSC-BHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHcCCCeEEEEECchHHh--hccHHHHHHHHHHHcC-CeEE---EecCccCCC-CHHHHHHHHHHHHhcCCCEE
Confidence 456777888889999998744322 2 35788888998888 7764 233222111 22567788888888899999
Q ss_pred EEecCCh--hHHHHHHHH
Q 006683 236 IVLQASL--DMTIHLFTE 251 (635)
Q Consensus 236 i~~~~~~--~~~~~~l~~ 251 (635)
|- .+.+ -++..++..
T Consensus 106 Ia-vGGGsviD~AK~iA~ 122 (407)
T 1vlj_A 106 LG-VGGGSVVDSAKAVAA 122 (407)
T ss_dssp EE-EESHHHHHHHHHHHH
T ss_pred EE-eCChhHHHHHHHHHH
Confidence 97 4443 344444433
No 202
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=60.12 E-value=82 Score=30.19 Aligned_cols=118 Identities=14% Similarity=0.050 Sum_probs=72.8
Q ss_pred eEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHHH
Q 006683 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (635)
Q Consensus 34 ~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~ 112 (635)
.=+||++.... ......-..|++.|+++.+ .+ .+......+...+.+.+.+++....+.+|+. .+...+..
T Consensus 174 ~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g-----~~--~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~-~nd~~A~g 245 (333)
T 3jvd_A 174 GMNIAALVGEESLSTTQERMRGISHAASIYG-----AE--VTFHFGHYSVESGEEMAQVVFNNGLPDALIV-ASPRLMAG 245 (333)
T ss_dssp SCEEEEEESCTTSHHHHHHHHHHHHHHHHTT-----CE--EEEEECCSSHHHHHHHHHHHHHTCCCSEEEE-CCHHHHHH
T ss_pred CCeEEEEeCCCCCccHHHHHHHHHHHHHHCC-----CC--EEEecCCCCHHHHHHHHHHHhcCCCCcEEEE-CCHHHHHH
Confidence 34788887654 2234456678888877753 22 2222155677888888889886544889997 44445555
Q ss_pred HHHhhccCC------ccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHH
Q 006683 113 VAEIASRVQ------VPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (635)
Q Consensus 113 v~~~~~~~~------ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~ 163 (635)
+...+.+.+ +.++++... .+.....|-+-.+..+...++...+++|.
T Consensus 246 ~~~al~~~G~~vP~disvig~D~~----~~~~~~~p~lttv~~~~~~~g~~Av~~L~ 298 (333)
T 3jvd_A 246 VMRAFTRLNVRVPHDVVIGGYDDP----EWYSFVGAGITTFVPPHEEMGKEAVRLLV 298 (333)
T ss_dssp HHHHHHHTTCCTTTTCEEEEESCC----GGGGGSTTSCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCceEEEEECCh----HHHHhcCCCceEEecCHHHHHHHHHHHHH
Confidence 555555544 336766533 23433335556677777788888877763
No 203
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=59.99 E-value=50 Score=32.63 Aligned_cols=99 Identities=7% Similarity=0.001 Sum_probs=61.4
Q ss_pred ceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHH
Q 006683 142 PYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVR 221 (635)
Q Consensus 142 p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~ 221 (635)
|+-+...+.. ...+.++++.++ +++.+|++...... ....+.+.+.+++.| +++.....+.+.. ..+...
T Consensus 19 p~~i~~G~g~---~~~l~~~l~~~g-~~~liVtd~~~~~~-~g~~~~v~~~L~~~g-~~~~~~~~~~~~p----~~~~v~ 88 (371)
T 1o2d_A 19 PTDVFFGEKI---LEKRGNIIDLLG-KRALVVTGKSSSKK-NGSLDDLKKLLDETE-ISYEIFDEVEENP----SFDNVM 88 (371)
T ss_dssp CCEEEESTTH---HHHHGGGGGGTC-SEEEEEEESSGGGT-SSHHHHHHHHHHHTT-CEEEEEEEECSSC----BHHHHH
T ss_pred CceEEECcCH---HHHHHHHHHHcC-CEEEEEECchHHhh-ccHHHHHHHHHHHcC-CeEEEeCCccCCC----CHHHHH
Confidence 4444444442 234566677778 89999998754320 235788999999888 7754322233332 225678
Q ss_pred HHHHhhhhcCceEEEEecCCh--hHHHHHHHH
Q 006683 222 GELKKVQDKQSRVFIVLQASL--DMTIHLFTE 251 (635)
Q Consensus 222 ~~l~~l~~~~~~vii~~~~~~--~~~~~~l~~ 251 (635)
+.++.+++.++|+||. .+.+ -++..++..
T Consensus 89 ~~~~~~~~~~~d~IIa-vGGGsv~D~AK~iA~ 119 (371)
T 1o2d_A 89 KAVERYRNDSFDFVVG-LGGGSPMDFAKAVAV 119 (371)
T ss_dssp HHHHHHTTSCCSEEEE-EESHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEE-eCChHHHHHHHHHHH
Confidence 8888888889999997 4443 344444433
No 204
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=59.96 E-value=20 Score=34.42 Aligned_cols=80 Identities=10% Similarity=0.095 Sum_probs=55.8
Q ss_pred eEEEEEEEcC--CCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHH
Q 006683 168 RRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (635)
Q Consensus 168 ~~vaii~~~~--~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~ 245 (635)
++|+++..+. +|. ..+.+.+.+.+++.| ..+.... ... + .......++.+.+.++|.||+........
T Consensus 4 ~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~--~~~----~-~~~~~~~i~~~~~~~vdgiIi~~~~~~~~ 73 (330)
T 3uug_A 4 GSVGIAMPTKSSARW--IDDGNNIVKQLQEAG-YKTDLQY--ADD----D-IPNQLSQIENMVTKGVKVLVIASIDGTTL 73 (330)
T ss_dssp CEEEEEECCSSSTHH--HHHHHHHHHHHHHTT-CEEEEEE--CTT----C-HHHHHHHHHHHHHHTCSEEEECCSSGGGG
T ss_pred cEEEEEeCCCcchHH--HHHHHHHHHHHHHcC-CEEEEee--CCC----C-HHHHHHHHHHHHHcCCCEEEEEcCCchhH
Confidence 5788888763 455 677888999999999 8776543 111 1 13445677777778999999844444456
Q ss_pred HHHHHHHHHcCC
Q 006683 246 IHLFTEANRMGL 257 (635)
Q Consensus 246 ~~~l~~a~~~g~ 257 (635)
...++.+.+.|+
T Consensus 74 ~~~~~~~~~~gi 85 (330)
T 3uug_A 74 SDVLKQAGEQGI 85 (330)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 677888888776
No 205
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=59.79 E-value=83 Score=28.79 Aligned_cols=117 Identities=11% Similarity=0.021 Sum_probs=71.6
Q ss_pred EEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcC--CeEEEEcCCChhhHH
Q 006683 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKE--KVKVIAGMETWEETA 111 (635)
Q Consensus 35 i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~--~v~aiiG~~~s~~~~ 111 (635)
=+|+++.... ......-..|++.++++. |.++... .....+...+.+.+.+++... .+.+|+.. +...+.
T Consensus 121 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~-~d~~a~ 193 (272)
T 3o74_A 121 RSIALIGARPELSVSQARAGGFDEALQGY-----TGEVRRY-QGEAFSRECGQRLMQQLIDDLGGLPDALVTT-SYVLLQ 193 (272)
T ss_dssp SEEEEEEECTTSHHHHHHHHHHHHHTTTC-----CSEEEEE-EESSSSHHHHHHHHHHHHHHHTSCCSEEEES-SHHHHH
T ss_pred cEEEEEecCCCCccHHHHHHHHHHHHHHc-----CCChhee-ecCCCCHHHHHHHHHHHHhcCCCCCcEEEEe-CchHHH
Confidence 4677776644 223345556776666553 2344433 334467778888888888653 58999974 445566
Q ss_pred HHHHhhccCC-cc----EEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH
Q 006683 112 VVAEIASRVQ-VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA 162 (635)
Q Consensus 112 ~v~~~~~~~~-ip----~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l 162 (635)
.+...+...+ +| ++++... .+.....|-+-.+..+...++...+++|
T Consensus 194 g~~~al~~~g~vp~di~vvg~d~~----~~~~~~~p~lttv~~~~~~~g~~a~~~l 245 (272)
T 3o74_A 194 GVFDTLQARPVDSRQLQLGTFGDN----QLLDFLPLPVNAMAQQHGQIAATALELA 245 (272)
T ss_dssp HHHHHHHTSCGGGCCCEEEEESCC----GGGGTSSSCEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccceEEEEeCCh----HHHHhcCCCceEEEeCHHHHHHHHHHHH
Confidence 6666666666 34 5655433 2333334556667777788888777776
No 206
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=59.73 E-value=23 Score=33.95 Aligned_cols=82 Identities=17% Similarity=0.083 Sum_probs=50.1
Q ss_pred cccceeHHHHHHHHHHCCCcccEEEecCCCChhhHH--HHHHcCccc---EEEeccc-c-cccccccccc------cc--
Q 006683 486 RYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLI--NGVYDKTYD---AAVGDLT-I-LGNRTEYVEF------TQ-- 550 (635)
Q Consensus 486 ~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~--~~l~~g~~D---~~~~~~~-~-~~~r~~~~~f------s~-- 550 (635)
...-+.-.|.+.+.+++|.++.++-.+ | ..|.+ ..+.+++.| +.++... . ++.+.+...| +.
T Consensus 21 ~~D~~aR~la~~l~~~lg~~vvV~n~~--G-a~g~ig~~~v~~a~~DGytl~~~~~~~~~~~~~~~~~~yd~~~d~~pv~ 97 (301)
T 2qpq_A 21 GTDMLARLIGNYLTESLGQTAVVENRP--G-ASGNVGARLVADRAPDGYSLLMVNSSFAVNPGVFRNLPFDPKKDFAAVI 97 (301)
T ss_dssp HHHHHHHHHHHHHHHGGGSCEEEEECC--T-GGGHHHHHHHHTSCSSSSEEEEEETHHHHHHHHCTTCSSCTTTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEECC--C-hhHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHhccCCCCCchhcchhhh
Confidence 445555677788888888885544443 3 56777 458888888 6664321 1 3333333333 21
Q ss_pred cceeeeeEEEEeCCCCCCcc
Q 006683 551 PYAESGFSMIVPAKQEESTW 570 (635)
Q Consensus 551 p~~~~~~~~~v~~~~~~~~~ 570 (635)
.+...+..++|+++.+.+.+
T Consensus 98 ~~~~~~~~lvv~~~s~~~sl 117 (301)
T 2qpq_A 98 NVAYVPSVFVVPAGSKYKTL 117 (301)
T ss_dssp EEEEEEEEEEEETTCSCCSH
T ss_pred ehhcCCeEEEEeCCCCCCCH
Confidence 24667888899988776443
No 207
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=58.99 E-value=29 Score=32.11 Aligned_cols=122 Identities=8% Similarity=-0.038 Sum_probs=72.5
Q ss_pred CeEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhc-CCeEEEEcCCChhhH
Q 006683 33 EVTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEET 110 (635)
Q Consensus 33 ~~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~ 110 (635)
+.=+||++.... ......-..|++.++++. ++.++. .+.....+...+.+.+.+++.. .++.+|+.. +...+
T Consensus 126 G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a 199 (276)
T 3ksm_A 126 KERNIALLRLRAGNASTDQREQGFLDVLRKH----DKIRII-AAPYAGDDRGAARSEMLRLLKETPTIDGLFTP-NESTT 199 (276)
T ss_dssp SCEEEEECBCCTTCHHHHHHHHHHHHHHTTC----TTEEEE-ECCBCCSSHHHHHHHHHHHHHHCSCCCEEECC-SHHHH
T ss_pred CCceEEEEEcCCCchhHHHHHHHHHHHHHhC----CCcEEE-EEecCCCcHHHHHHHHHHHHHhCCCceEEEEC-Cchhh
Confidence 557899887543 333455667777777543 355554 2344556788888888888864 478999974 44555
Q ss_pred HHHHHhhccCCc----cEEeecCCCCCCCCCCCCCceE-EEEecCcHHHHHHHHHHH
Q 006683 111 AVVAEIASRVQV----PILSFAAPAVTPLSMSRRWPYL-IRMASNDSEQMKCIADLA 162 (635)
Q Consensus 111 ~~v~~~~~~~~i----p~Is~~~~~~~~~l~~~~~p~~-~r~~p~~~~~~~al~~~l 162 (635)
..+...+...++ .++++... ......-..|.+ ..+..+...++...++++
T Consensus 200 ~g~~~al~~~g~p~di~vig~d~~--~~~~~~~~~~~l~ttv~~~~~~~g~~a~~~l 254 (276)
T 3ksm_A 200 IGALVAIRQSGMSKQFGFIGFDQT--EELEAAMYAGEISNLVVQNPEYMGYLAVQRA 254 (276)
T ss_dssp HHHHHHHHHTTCTTSSEEEEESCC--HHHHHHHHTTSSSEEEECCHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCeEEEEeCCC--HHHHHHHHcCCceEEEEeCHHHhHHHHHHHH
Confidence 556666666664 46666544 111111111322 345556666777766665
No 208
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=58.83 E-value=26 Score=32.69 Aligned_cols=73 Identities=10% Similarity=-0.075 Sum_probs=49.0
Q ss_pred eeHHHHHHHHHHC-CCcccEEEecCCCChhhHHHHHHcCcccEEEeccccccc-cccccc-ccccceeeeeEEEEeCCCC
Q 006683 490 FSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGN-RTEYVE-FTQPYAESGFSMIVPAKQE 566 (635)
Q Consensus 490 ~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~-r~~~~~-fs~p~~~~~~~~~v~~~~~ 566 (635)
+--++++.+.++. +.++++.... -...+.+|.+|++|+++....+..+ ..+.-+ ...|+....++++++++.+
T Consensus 17 ~l~~~~~~f~~~~P~v~i~v~~~~----S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l~~~~i~~d~lvvvv~~~~p 92 (264)
T 4ecf_A 17 LVEAAGEQYTGEHLGTFINVQGGG----TGTGLSQIQEGAVQIGNSDLFAGEQKGINARQLVDHRVAVVGITPIVNKKVG 92 (264)
T ss_dssp HHHHHHHHHHHHSTTEEEEEEEEC----HHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGEECCEEEEEEEEEEECTTSS
T ss_pred HHHHHHHHHHHHCCCceEEEEeCC----CHHHHHHHHcCCCchhhccCCCChhHHhhccCCEEEEEEEEEEEEEEcCCCc
Confidence 3456777777766 6665554332 5678999999999999876554432 111112 2468999999999987755
No 209
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=58.82 E-value=21 Score=34.42 Aligned_cols=81 Identities=11% Similarity=0.090 Sum_probs=49.9
Q ss_pred ccceeHHHHHHHHHHCCCcccEEEecCCCChhhHH--HHHHcCccc---EEEec---cccccccc-ccccc------cc-
Q 006683 487 YDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLI--NGVYDKTYD---AAVGD---LTILGNRT-EYVEF------TQ- 550 (635)
Q Consensus 487 ~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~--~~l~~g~~D---~~~~~---~~~~~~r~-~~~~f------s~- 550 (635)
..-+.-.|.+.|.+++|.++.++-.+ | ..|.+ ..+.+++.| +.++. +.+++.+. +.+.| +.
T Consensus 33 ~D~~aR~la~~l~~~lg~~vvV~N~p--G-a~g~ig~~~v~~a~~DGytl~~~~~~~~~~~~~~~~~~~~yd~~~df~pv 109 (314)
T 2dvz_A 33 TDIIARLVTQRMSQELGQPMVVENKG--G-AGGAIGASEAARAEPDGYTLSIATVSTMAVNPACRPKDLPYDPIKDFQPV 109 (314)
T ss_dssp HHHHHHHHHHHHHHHHTSCEEEEECC--C-GGGHHHHHHHHHSCTTSSEEEEECHHHHTHHHHHSTTTCSCCTTTSEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEECC--C-chHHHHHHHHHhCCCCCcEEEEecCcHHHHHHHHhCCCCCCCchhcccee
Confidence 34344466777788889885554444 3 56677 458888887 66653 34554443 33434 21
Q ss_pred -cceeeeeEEEEeCCCCCCcc
Q 006683 551 -PYAESGFSMIVPAKQEESTW 570 (635)
Q Consensus 551 -p~~~~~~~~~v~~~~~~~~~ 570 (635)
.+...+..++|+++.+.+.+
T Consensus 110 ~~~~~~~~~lvv~~ds~~~tl 130 (314)
T 2dvz_A 110 TNFANTANVVAVNPKFPAKDF 130 (314)
T ss_dssp EEEEEECEEEEECTTSSCSSH
T ss_pred eEcccCCEEEEEeCCCCCCCH
Confidence 25667888999988776443
No 210
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=58.51 E-value=29 Score=32.22 Aligned_cols=123 Identities=12% Similarity=0.167 Sum_probs=66.6
Q ss_pred HHHHHHhhcCCeEEEEcCCChhhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCC
Q 006683 87 TAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYN 166 (635)
Q Consensus 87 ~~~~~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~ 166 (635)
+.+..+. +.++.+|+-+..+.++..+..+-+..++|+|...- .++...++..+
T Consensus 53 ~~~~~L~-~~g~d~iviaCnTa~~~~~~~lr~~~~iPvigi~e--------------------------~~~~~A~~~~~ 105 (254)
T 1b73_A 53 ECAGFLK-DKGVDIIVVACNTASAYALERLKKEINVPVFGVIE--------------------------PGVKEALKKSR 105 (254)
T ss_dssp HHHHHHH-TTTCSEEEECCHHHHTTSHHHHHHHSSSCEEESHH--------------------------HHHHHHHHHCS
T ss_pred HHHHHHH-HCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeeeH--------------------------HHHHHHHHccC
Confidence 3344444 78999888766555433455555567888885320 11112233456
Q ss_pred CeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCC-CC--C--C---chHHHHHHHHhhhhcCceEEEEe
Q 006683 167 WRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPIS-SI--S--D---PKEAVRGELKKVQDKQSRVFIVL 238 (635)
Q Consensus 167 w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~-~~--~--d---~~~~~~~~l~~l~~~~~~vii~~ 238 (635)
.++|+++......- ...+++.++..| +++.... .+... .. . + ....+.+.++.+.+. +|+||+
T Consensus 106 ~~rigVlaT~~T~~-----~~~y~~~l~~~g-~~v~~~~-~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~IIL- 176 (254)
T 1b73_A 106 NKKIGVIGTPATVK-----SGAYQRKLEEGG-ADVFAKA-CPLFAPLAEEGLLEGEITRKVVEHYLKEFKGK-IDTLIL- 176 (254)
T ss_dssp SCEEEEEECHHHHH-----HCHHHHHHHTTS-CEEEEEE-CCCCTTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSEEEE-
T ss_pred CCEEEEEEChHHhh-----hHHHHHHHHcCC-CEEEecC-CHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEE-
Confidence 78999998664321 223455666777 7764221 11111 00 0 0 112455566666655 999999
Q ss_pred cCChhHH
Q 006683 239 QASLDMT 245 (635)
Q Consensus 239 ~~~~~~~ 245 (635)
.|..-..
T Consensus 177 GCT~~p~ 183 (254)
T 1b73_A 177 GCTHYPL 183 (254)
T ss_dssp CCCCTTC
T ss_pred CccChHH
Confidence 7765443
No 211
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=58.18 E-value=25 Score=33.04 Aligned_cols=83 Identities=7% Similarity=0.026 Sum_probs=55.3
Q ss_pred CCCeEEEEEEEcC--CCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCCh
Q 006683 165 YNWRRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL 242 (635)
Q Consensus 165 ~~w~~vaii~~~~--~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~ 242 (635)
-+-++|+++..+. +|. ..+.+.+.+.+++.| ..+..... .. + .......++.+.+.++|.||+.....
T Consensus 6 ~~~~~Ig~i~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~---~~---~-~~~~~~~~~~l~~~~vdgiI~~~~~~ 75 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFA--QRLINAFKAEAKANK-YEALVATS---QN---S-RISEREQILEFVHLKVDAIFITTLDD 75 (293)
T ss_dssp ---CEEEEEESCSCSHHH--HHHHHHHHHHHHHTT-CEEEEEEC---SS---C-HHHHHHHHHHHHHTTCSEEEEECSCT
T ss_pred CCCcEEEEEEecCCcHHH--HHHHHHHHHHHHHcC-CEEEEECC---CC---C-HHHHHHHHHHHHHcCCCEEEEecCCh
Confidence 3446789988653 354 667788999999999 77765421 11 1 13455778888888999999844555
Q ss_pred hHHHHHHHHHHHcCC
Q 006683 243 DMTIHLFTEANRMGL 257 (635)
Q Consensus 243 ~~~~~~l~~a~~~g~ 257 (635)
......++.+.+.++
T Consensus 76 ~~~~~~~~~~~~~~i 90 (293)
T 3l6u_A 76 VYIGSAIEEAKKAGI 90 (293)
T ss_dssp TTTHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCC
Confidence 555577788887776
No 212
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=57.60 E-value=21 Score=33.82 Aligned_cols=81 Identities=10% Similarity=0.096 Sum_probs=51.2
Q ss_pred eEEEEEEEc--CCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHH
Q 006683 168 RRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (635)
Q Consensus 168 ~~vaii~~~--~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~ 245 (635)
.+|+++..+ ++|. ..+.+.+++.+++.| +++.... +... + .......++.+...++|.||+........
T Consensus 5 ~~Ig~i~~~~~~~~~--~~~~~g~~~~~~~~g-~~~~~~~--~~~~---~-~~~~~~~~~~l~~~~vdgiii~~~~~~~~ 75 (303)
T 3d02_A 5 KTVVNISKVDGMPWF--NRMGEGVVQAGKEFN-LNASQVG--PSST---D-APQQVKIIEDLIARKVDAITIVPNDANVL 75 (303)
T ss_dssp EEEEEECSCSSCHHH--HHHHHHHHHHHHHTT-EEEEEEC--CSSS---C-HHHHHHHHHHHHHTTCSEEEECCSCHHHH
T ss_pred eEEEEEeccCCChHH--HHHHHHHHHHHHHcC-CEEEEEC--CCCC---C-HHHHHHHHHHHHHcCCCEEEEecCChHHH
Confidence 568888754 3455 667788888999999 7765321 1111 1 13345667777778899988833344444
Q ss_pred HHHHHHHHHcCC
Q 006683 246 IHLFTEANRMGL 257 (635)
Q Consensus 246 ~~~l~~a~~~g~ 257 (635)
...++.+.+.++
T Consensus 76 ~~~~~~~~~~~i 87 (303)
T 3d02_A 76 EPVFKKARDAGI 87 (303)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 556777777664
No 213
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=57.27 E-value=66 Score=30.13 Aligned_cols=116 Identities=10% Similarity=0.064 Sum_probs=70.3
Q ss_pred EEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcC----CeEEEEcCCChhh
Q 006683 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKE----KVKVIAGMETWEE 109 (635)
Q Consensus 35 i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~----~v~aiiG~~~s~~ 109 (635)
=+||++.... ......-..|++.|+++.+ .++. +.....+...+.+.+.+++... .+.+|+. .+...
T Consensus 132 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g-----~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~-~~d~~ 203 (295)
T 3hcw_A 132 DELIFITEKGNFEVSKDRIQGFETVASQFN-----LDYQ--IIETSNEREVILNYMQNLHTRLKDPNIKQAIIS-LDAML 203 (295)
T ss_dssp SEEEEEEESSCCHHHHHHHHHHHHHHHHTT-----CEEE--EEEECSCHHHHHHHHHHHHHHHTCTTSCEEEEE-SSHHH
T ss_pred ccEEEEcCCccchhHHHHHHHHHHHHHHcC-----CCee--EEeccCCHHHHHHHHHHHHhhcccCCCCcEEEE-CChHH
Confidence 4788887654 2234455678888887753 3444 2334456777777788887532 7899996 44445
Q ss_pred HHHHHHhhccCC--cc----EEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH
Q 006683 110 TAVVAEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA 162 (635)
Q Consensus 110 ~~~v~~~~~~~~--ip----~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l 162 (635)
+..+...+.+.+ || ++++... .+.....|-+-.+..+...+++..+++|
T Consensus 204 A~g~~~al~~~g~~vP~di~vig~D~~----~~~~~~~p~lttv~~~~~~~g~~a~~~l 258 (295)
T 3hcw_A 204 HLAILSVLYELNIEIPKDVMTATFNDS----YLTEIASPPQTCIDIKPRMLGQQAGSAI 258 (295)
T ss_dssp HHHHHHHHHHTTCCTTTTEEEEEECCS----HHHHTSSSCCEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCceEEEEeCCh----hHHhhCCCCeeEEEECHHHHHHHHHHHH
Confidence 555666665554 33 6665433 2333333555566777778888777776
No 214
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=56.86 E-value=18 Score=34.40 Aligned_cols=122 Identities=17% Similarity=0.160 Sum_probs=64.6
Q ss_pred HHHHHhhcCCeEEEEcCCChhhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCC
Q 006683 88 AAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNW 167 (635)
Q Consensus 88 ~~~~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w 167 (635)
.+..|. +.++.+|+-+..+.++..+..+-+..++|+|...- + ++...++..+-
T Consensus 78 ~~~~L~-~~g~d~IVIACNTas~~~l~~lr~~~~iPVigiie----p----------------------a~~~A~~~~~~ 130 (290)
T 2vvt_A 78 MADFLL-KKRIKMLVIACNTATAVALEEIKAALPIPVVGVIL----P----------------------GARAAVKVTKN 130 (290)
T ss_dssp HHHHHH-TTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESSH----H----------------------HHHHHHHHCSS
T ss_pred HHHHHH-HCCCCEEEEeCcchhHHHHHHHHHhCCCCEEcccH----H----------------------HHHHHHHhcCC
Confidence 344444 77999998766665545566666778899986320 1 11111223455
Q ss_pred eEEEEEEEcCCCCCCcchHHHHHHHHhcc--CCeEEEEEeeeC-------CCCCC-CCchHHHHHHHHhhhhcCceEEEE
Q 006683 168 RRVAAIYEDNVYGGDSGKLALLAEALQNV--SSSEIQSRLVLP-------PISSI-SDPKEAVRGELKKVQDKQSRVFIV 237 (635)
Q Consensus 168 ~~vaii~~~~~~g~~~~~~~~~~~~l~~~--g~~~v~~~~~~~-------~~~~~-~d~~~~~~~~l~~l~~~~~~vii~ 237 (635)
++|+++......- ...+++.+++. + .++... ..+ .+... ......+.+.++.+++.++|+||+
T Consensus 131 ~rIgVLaT~~T~~-----s~~y~~~l~~~~~~-~~v~~~-~~~~lv~~ve~g~~~~~~~~~~l~~~l~~l~~~g~D~IVL 203 (290)
T 2vvt_A 131 NKIGVIGTLGTIK-----SASYEIAIKSKAPA-IEVTSL-ACPKFVPIVESNQYRSSVAKKIVAETLQALQLKGLDTLIL 203 (290)
T ss_dssp SEEEEEECHHHHH-----TTHHHHHHHTTCTT-SEEEEE-ECTTHHHHHHTTCTTSHHHHHHHHHHHGGGTTSCCSEEEE
T ss_pred CEEEEEeCcHhhh-----hHHHHHHHHHhCCC-CEEEec-cCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 6788777553321 11344455544 3 444322 111 01000 001134566677777778999999
Q ss_pred ecCChhH
Q 006683 238 LQASLDM 244 (635)
Q Consensus 238 ~~~~~~~ 244 (635)
.|..-.
T Consensus 204 -GCTh~p 209 (290)
T 2vvt_A 204 -GCTHYP 209 (290)
T ss_dssp -CSTTGG
T ss_pred -CCcCHH
Confidence 776544
No 215
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=56.70 E-value=44 Score=28.79 Aligned_cols=66 Identities=14% Similarity=0.226 Sum_probs=45.9
Q ss_pred eEEEEEEEcCCCCCC-cchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc-CceEEEEecCC
Q 006683 168 RRVAAIYEDNVYGGD-SGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-QSRVFIVLQAS 241 (635)
Q Consensus 168 ~~vaii~~~~~~g~~-~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~-~~~vii~~~~~ 241 (635)
-++++|...|.-|.- ..-...+.+.+++.| .++.....++.+. ..+.+.+++..+. ++|+||. .+.
T Consensus 11 ~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G-~~v~~~~iv~Dd~------~~i~~~l~~a~~~~~~DlVit-tGG 78 (172)
T 1mkz_A 11 TRIAILTVSNRRGEEDDTSGHYLRDSAQEAG-HHVVDKAIVKENR------YAIRAQVSAWIASDDVQVVLI-TGG 78 (172)
T ss_dssp CEEEEEEECSSCCGGGCHHHHHHHHHHHHTT-CEEEEEEEECSCH------HHHHHHHHHHHHSSSCCEEEE-ESC
T ss_pred CEEEEEEEeCCCCcccCccHHHHHHHHHHCC-CeEeEEEEeCCCH------HHHHHHHHHHHhcCCCCEEEe-CCC
Confidence 478888877765510 122456888889999 8888776666543 6777788777665 6899998 544
No 216
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=56.41 E-value=37 Score=33.58 Aligned_cols=95 Identities=12% Similarity=0.063 Sum_probs=61.1
Q ss_pred ceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHH
Q 006683 142 PYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVR 221 (635)
Q Consensus 142 p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~ 221 (635)
|+-+...+... ..+.++++.++ +++.+|++...+ ....+.+.+.+++.| +.+.. ..+.... ..+...
T Consensus 10 p~~i~~G~g~~---~~l~~~l~~~g-~~~livtd~~~~---~~~~~~v~~~L~~~g-~~~~~-~~~~ge~----~~~~v~ 76 (370)
T 1jq5_A 10 PAKYVQGKNVI---TKIANYLEGIG-NKTVVIADEIVW---KIAGHTIVNELKKGN-IAAEE-VVFSGEA----SRNEVE 76 (370)
T ss_dssp CSEEEEETTGG---GGHHHHHTTTC-SEEEEEECHHHH---HHTHHHHHHHHHTTT-CEEEE-EECCSSC----BHHHHH
T ss_pred CCeEEECcCHH---HHHHHHHHHcC-CeEEEEEChHHH---HHHHHHHHHHHHHcC-CeEEE-EeeCCCC----CHHHHH
Confidence 55455555532 23566777778 899999876543 335678888898888 87753 2233322 225677
Q ss_pred HHHHhhhhcCceEEEEecCCh--hHHHHHHH
Q 006683 222 GELKKVQDKQSRVFIVLQASL--DMTIHLFT 250 (635)
Q Consensus 222 ~~l~~l~~~~~~vii~~~~~~--~~~~~~l~ 250 (635)
+.++.+++.++|+||. .+.+ -++..++.
T Consensus 77 ~~~~~~~~~~~d~IIa-vGGGsv~D~aK~iA 106 (370)
T 1jq5_A 77 RIANIARKAEAAIVIG-VGGGKTLDTAKAVA 106 (370)
T ss_dssp HHHHHHHHTTCSEEEE-EESHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEE-eCChHHHHHHHHHH
Confidence 8888888889999997 4443 44444443
No 217
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=56.23 E-value=7.2 Score=35.99 Aligned_cols=75 Identities=12% Similarity=-0.014 Sum_probs=52.1
Q ss_pred cceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccEEEecccccccccc---cccccccceeeeeEEEEeCC
Q 006683 488 DGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTE---YVEFTQPYAESGFSMIVPAK 564 (635)
Q Consensus 488 ~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~---~~~fs~p~~~~~~~~~v~~~ 564 (635)
.|+--+|+..+.++.|.++++.... -..++.++.+|.+|+.+..-...++... ...=..+|....+++++|++
T Consensus 18 s~ll~eL~~~Fek~~gv~V~~~~~g----Sg~ll~qi~~G~aDVfisa~~~~~~~l~~~G~~~~~~~~a~N~LVLV~P~~ 93 (242)
T 3kn3_A 18 TGLLDVLAPAYKKDTGVDLKWVAVG----TGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRTPVMYNDFVIIGNPS 93 (242)
T ss_dssp HTHHHHHHHHHHHHHSCEEEEEEEC----HHHHHHHHHTTCCSEEEECCHHHHHHHHHHTSEEEEEEEECSCEEEEECTH
T ss_pred chHHHHHHHHHHHHhCCeEEEEEcC----cHHHHHHHhcCCCCEEEecChHhHHHHHhcCCCccceEEEcceEEEEEeCC
Confidence 4566788899988889886666544 4578999999999998765443333211 01112578888999999886
Q ss_pred CC
Q 006683 565 QE 566 (635)
Q Consensus 565 ~~ 566 (635)
++
T Consensus 94 ~P 95 (242)
T 3kn3_A 94 FK 95 (242)
T ss_dssp HH
T ss_pred Cc
Confidence 54
No 218
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=56.08 E-value=40 Score=33.06 Aligned_cols=95 Identities=13% Similarity=0.195 Sum_probs=60.3
Q ss_pred ceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHH
Q 006683 142 PYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVR 221 (635)
Q Consensus 142 p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~ 221 (635)
|+-+...+... ..+.++++.++.+++.+|++...+ +...+.+.+.+++.| +++......+.. ..+...
T Consensus 12 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~---~~~~~~v~~~L~~~g-~~~~~~~~~~~~-----~~~~v~ 79 (354)
T 3ce9_A 12 PLILEVGNNKI---YNIGQIIKKGNFKRVSLYFGEGIY---ELFGETIEKSIKSSN-IEIEAVETVKNI-----DFDEIG 79 (354)
T ss_dssp CSEEEEESSCG---GGHHHHHGGGTCSEEEEEEETTHH---HHHHHHHHHHHHTTT-CEEEEEEEECCC-----BHHHHH
T ss_pred CcEEEECCCHH---HHHHHHHHhcCCCeEEEEECccHH---HHHHHHHHHHHHHcC-CeEEEEecCCCC-----CHHHHH
Confidence 55555565532 235677888888899999877543 345677888898888 776533212222 125566
Q ss_pred HHHHhhhhcCceEEEEecCCh--hHHHHHHH
Q 006683 222 GELKKVQDKQSRVFIVLQASL--DMTIHLFT 250 (635)
Q Consensus 222 ~~l~~l~~~~~~vii~~~~~~--~~~~~~l~ 250 (635)
+. +.+++.++|+||. .+.+ -++..++.
T Consensus 80 ~~-~~~~~~~~d~IIa-vGGGsv~D~aK~vA 108 (354)
T 3ce9_A 80 TN-AFKIPAEVDALIG-IGGGKAIDAVKYMA 108 (354)
T ss_dssp HH-HTTSCTTCCEEEE-EESHHHHHHHHHHH
T ss_pred HH-HHhhhcCCCEEEE-ECChHHHHHHHHHH
Confidence 67 7788889999997 4443 44444443
No 219
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=56.00 E-value=17 Score=33.80 Aligned_cols=72 Identities=8% Similarity=-0.014 Sum_probs=47.6
Q ss_pred eHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCc-ccEEEeccccccccc---cccc--ccccceeeeeEEEEeCC
Q 006683 491 SIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKT-YDAAVGDLTILGNRT---EYVE--FTQPYAESGFSMIVPAK 564 (635)
Q Consensus 491 ~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~-~D~~~~~~~~~~~r~---~~~~--fs~p~~~~~~~~~v~~~ 564 (635)
.-++++++.++.|.++++..-. -..++.++.+|. +|+.++.-....++. ..+. -..+|....++|+++++
T Consensus 37 ~~~l~~~Fe~~~gi~V~~~~~~----Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~~~~~~a~~~lvl~~~~~ 112 (253)
T 3gzg_A 37 MDEAATAYEKATGTPVRVSYAA----SSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGNTLVLVAPAS 112 (253)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEC----HHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEECEEEEEETT
T ss_pred HHHHHHHHHHHhCCeEEEEECC----hHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCCcceeEEeeEEEEEEECC
Confidence 3578888888889886665433 456888888886 999887532222222 2221 12467788999999987
Q ss_pred CC
Q 006683 565 QE 566 (635)
Q Consensus 565 ~~ 566 (635)
++
T Consensus 113 ~~ 114 (253)
T 3gzg_A 113 SK 114 (253)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 220
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=55.53 E-value=27 Score=31.41 Aligned_cols=70 Identities=11% Similarity=0.050 Sum_probs=48.4
Q ss_pred ceeHHHHHHHHHHC-CCcccEEEecCCCChhhHHHHHHcCcccEEEecccccccccccccccccceeeeeEEEEeCCCC
Q 006683 489 GFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (635)
Q Consensus 489 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (635)
.+-..++..+.++. +.++++... +...++..|.+|++|+++..... ..+.+. +.++....++++++++.+
T Consensus 32 ~~l~~~l~~f~~~~P~i~l~~~~~----~~~~~~~~l~~g~~Dl~i~~~~~---~~~~~~-~~~l~~~~~~~v~~~~hp 102 (241)
T 3oxn_A 32 TILPFALPRIYQEAPNVSFNFLPL----QHDRLSDQLTYEGADLAICRPTG---PVEPLR-SEILGRVGVLCLLSKQHP 102 (241)
T ss_dssp HTHHHHHHHHHHHCTTCEEEEEEC----CGGGHHHHHHTSCCSEEEECCSS---CCTTEE-EEEEECCCEEEEEETTSG
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEC----CcccHHHHHHcCCCCEEEecCCC---CCccce-eEEeecccEEEEEeCCCC
Confidence 44578888888876 666545433 36679999999999999874332 222232 357788889999987754
No 221
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=55.49 E-value=18 Score=33.15 Aligned_cols=71 Identities=8% Similarity=0.077 Sum_probs=47.1
Q ss_pred eHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCc-ccEEEeccccccccc---cccc--ccccceeeeeEEEEeCC
Q 006683 491 SIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKT-YDAAVGDLTILGNRT---EYVE--FTQPYAESGFSMIVPAK 564 (635)
Q Consensus 491 ~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~-~D~~~~~~~~~~~r~---~~~~--fs~p~~~~~~~~~v~~~ 564 (635)
.-++++.+.++.|.++++..-. -..++.++.+|. +|+.++.-....++. ..+. -..+|....++|+++++
T Consensus 21 ~~~l~~~Fe~~~gi~V~~~~~~----s~~l~~~i~~g~~~Dv~~~a~~~~~~~l~~~g~~~~~~~~~~~~~~lvl~~~~~ 96 (237)
T 3r26_A 21 MQDIATQFKKEKGVDVVSSFAS----SSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKA 96 (237)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC----HHHHHHHHHHTCCCSEEECSSHHHHHHHHHTTCBCGGGCEEEEEECEEEEEESS
T ss_pred HHHHHHHHHhccCCeEEEEECC----HHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCCCCCceeeeEcceEEEEEeCC
Confidence 3578888888889886665432 456888888887 999887432212221 2221 12478888999999986
Q ss_pred C
Q 006683 565 Q 565 (635)
Q Consensus 565 ~ 565 (635)
.
T Consensus 97 ~ 97 (237)
T 3r26_A 97 S 97 (237)
T ss_dssp C
T ss_pred C
Confidence 5
No 222
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=55.37 E-value=8.3 Score=39.06 Aligned_cols=65 Identities=8% Similarity=-0.062 Sum_probs=42.5
Q ss_pred HHHHCCC-cccEEEecCCCChhhHHHHHHcCc----ccEEEec--cc--cccc---ccccccccccc--eeeeeEEEEeC
Q 006683 498 VVDHLNY-DLPYEFVPHDGVYDDLINGVYDKT----YDAAVGD--LT--ILGN---RTEYVEFTQPY--AESGFSMIVPA 563 (635)
Q Consensus 498 la~~l~~-~~~~~~~~~~~~~~~~~~~l~~g~----~D~~~~~--~~--~~~~---r~~~~~fs~p~--~~~~~~~~v~~ 563 (635)
+.++.|+ +++++..+ +|..++..|..|+ +|++... +. .+.. |.+..++..+. ...+..+++++
T Consensus 56 ~~~~~Gl~~Ve~~~~~---~~~~~~~al~~G~~~~giD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~v~~ 132 (417)
T 2g29_A 56 FYAKYGMPDVEVLKQA---SWGTTRDNLVLGSASGGIDGAHILTPMPYLITMGTVTDGKPTPMYILARLNVNGQGIQLGN 132 (417)
T ss_dssp HHHHTTCTTCEEEECS---CHHHHHHHHHHCGGGTSCSEEEEETHHHHHHHHCTTSSSCCCCEEEEEECCBSCEEEEECG
T ss_pred chHHcCCCeeEEEecC---CHHHHHHHHHCCCCcCCcCeEeecchHHHHHHhCcccCCCCCCEEEEEEeccCCeEEEEec
Confidence 4556688 86665433 4999999999999 9998763 22 2322 33455555443 34567888887
Q ss_pred CC
Q 006683 564 KQ 565 (635)
Q Consensus 564 ~~ 565 (635)
+.
T Consensus 133 ~~ 134 (417)
T 2g29_A 133 NY 134 (417)
T ss_dssp GG
T ss_pred ch
Confidence 64
No 223
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=55.23 E-value=32 Score=32.31 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=25.0
Q ss_pred HHhhcCCeEEEEcCCChhhHHHHHHhhccCCccEEe
Q 006683 91 ELINKEKVKVIAGMETWEETAVVAEIASRVQVPILS 126 (635)
Q Consensus 91 ~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~ip~Is 126 (635)
+.+.+.++.+|+-+..+.++..+..+-+..++|+|.
T Consensus 68 ~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvig 103 (273)
T 2oho_A 68 NFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLG 103 (273)
T ss_dssp HHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHCCCCEEEEeCchHhHHHHHHHHHhCCCCEEe
Confidence 333478999988766665545556666677899986
No 224
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=54.96 E-value=1.7e+02 Score=29.13 Aligned_cols=153 Identities=10% Similarity=0.015 Sum_probs=82.4
Q ss_pred EEEEEEeeCCCcCc-HHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEc---CC-Chhh
Q 006683 35 TKIGAIVDANSQMG-KQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG---ME-TWEE 109 (635)
Q Consensus 35 i~IG~i~p~s~~~g-~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG---~~-~s~~ 109 (635)
+.|-.|.|.++..- .....-++...+..+.+...-++.+.+....++....++++.+-+.+.++.+++- .. .+..
T Consensus 231 Ldi~~I~P~HGpi~r~~~~~ii~~Y~~w~~~~~~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~ 310 (410)
T 4dik_A 231 LKIKALLPGHGLIWKKDPQRLLNHYVSVAKGDPKKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAI 310 (410)
T ss_dssp SCCSEEEESSSCBBSSCHHHHHHHHHHHHHTCCCTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCH
T ss_pred CCCCEEecCCcchhhcCHHHHHHHHHHhhcccccccceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCH
Confidence 45667999986432 3345556666665554432235554433344566666777666666788776542 12 2233
Q ss_pred HHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHH-HCCCeEEEEEEEcCCCCCCcchHHH
Q 006683 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR-KYNWRRVAAIYEDNVYGGDSGKLAL 188 (635)
Q Consensus 110 ~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~-~~~w~~vaii~~~~~~g~~~~~~~~ 188 (635)
+..+..+....++.+= +|.+....+| . ....+..+.. .+.-|.++++. +..|+ -...+.
T Consensus 311 s~i~~~i~~~~~ivlG-------spT~~~~~~p-------~---~~~~l~~l~~~~~~~K~~~~FG-SyGWs--g~a~~~ 370 (410)
T 4dik_A 311 SEILKDIPDSEALIFG-------VSTYEAEIHP-------L---MRFTLLEIIDKANYEKPVLVFG-VHGWA--PSAERT 370 (410)
T ss_dssp HHHHHHSTTCSEEEEE-------ECCTTSSSCH-------H---HHHHHHHHHHHCCCCCEEEEEE-ECCCC--CTTSCC
T ss_pred HHHHHHHHhCCeEEEE-------eCCcCCcCCH-------H---HHHHHHHHHhcccCCCEEEEEE-CCCCC--cHHHHH
Confidence 4445555554444332 2333333222 1 1223333332 23445666554 55565 455788
Q ss_pred HHHHHhccCCeEEEEEeeeC
Q 006683 189 LAEALQNVSSSEIQSRLVLP 208 (635)
Q Consensus 189 ~~~~l~~~g~~~v~~~~~~~ 208 (635)
+.+.+++.| .++.....+.
T Consensus 371 ~~~~l~~~~-~~~v~~~~~~ 389 (410)
T 4dik_A 371 AGELLKETK-FRILSFTEIK 389 (410)
T ss_dssp HHHHHTTSS-CEEEEEEEEC
T ss_pred HHHHHHHCC-CEEECcEEEE
Confidence 999999999 8887655443
No 225
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=54.83 E-value=47 Score=31.19 Aligned_cols=123 Identities=12% Similarity=0.124 Sum_probs=64.0
Q ss_pred HHHHHhhcCCeEEEEcCCChhhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCCC
Q 006683 88 AAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYNW 167 (635)
Q Consensus 88 ~~~~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~w 167 (635)
.+..|. +.++.+|+-+..+.++..+..+-+..++|+|...- + ++...++..+-
T Consensus 61 ~~~~L~-~~g~d~IViACNTas~~~l~~lr~~~~iPVigiie----p----------------------~~~~A~~~~~~ 113 (276)
T 2dwu_A 61 MVEFLK-QFPLKALVVACNTAAAATLAALQEALSIPVIGVIH----P----------------------GARAAIKVTKK 113 (276)
T ss_dssp HHHHHT-TSCEEEEEECCHHHHHHHHHHHHHHCSSCEEESHH----H----------------------HHHHHHHHCSS
T ss_pred HHHHHH-HCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEeccH----H----------------------HHHHHHHhcCC
Confidence 333443 78999999766665545566666677899885320 0 11111223455
Q ss_pred eEEEEEEEcCCCCCCcchHHHHHHHHhcc--CCeEEEEEeeeCC-------CCCC-CCchHHHHHHHHhhhhcCceEEEE
Q 006683 168 RRVAAIYEDNVYGGDSGKLALLAEALQNV--SSSEIQSRLVLPP-------ISSI-SDPKEAVRGELKKVQDKQSRVFIV 237 (635)
Q Consensus 168 ~~vaii~~~~~~g~~~~~~~~~~~~l~~~--g~~~v~~~~~~~~-------~~~~-~d~~~~~~~~l~~l~~~~~~vii~ 237 (635)
++|+++......- . ..+++.+++. + .++.... -+. +... ......+.+.++.+++.++|+||+
T Consensus 114 ~rIgVlaT~~T~~--s---~~y~~~i~~~~~~-~~v~~~~-~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~IVL 186 (276)
T 2dwu_A 114 GKIGVIGTVGTIQ--S---NMYEKALHELDTY-LKVHSHA-CPTLATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLIL 186 (276)
T ss_dssp SEEEEEECHHHHH--T---THHHHHHHHHCTT-CEEEEEE-CTTHHHHHHHSTTCHHHHHHHHHHHHHHHHTSCCSEEEE
T ss_pred CeEEEEeChhhhh--h---HHHHHHHHHhCCC-CEEEeee-CHHHHHHHHcCCcCCHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 6788887554321 1 1233333332 3 4443221 111 0000 001134666777777778999999
Q ss_pred ecCChhHH
Q 006683 238 LQASLDMT 245 (635)
Q Consensus 238 ~~~~~~~~ 245 (635)
.|..-..
T Consensus 187 -GCTh~p~ 193 (276)
T 2dwu_A 187 -GCTHYPL 193 (276)
T ss_dssp -CSTTGGG
T ss_pred -CCCCHHH
Confidence 7765443
No 226
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=54.74 E-value=12 Score=35.43 Aligned_cols=82 Identities=12% Similarity=0.077 Sum_probs=54.9
Q ss_pred eEEEEEEEcC--CCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHH
Q 006683 168 RRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (635)
Q Consensus 168 ~~vaii~~~~--~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~ 245 (635)
.+|+++..+. +|. ..+.+.+.+.+++.| ..+.... .... .+ .......++.+.+.++|.||+........
T Consensus 4 ~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~--~~~~--~~-~~~~~~~i~~l~~~~vdgiii~~~~~~~~ 75 (297)
T 3rot_A 4 DKYYLITHGSQDPYW--TSLFQGAKKAAEELK-VDLQILA--PPGA--ND-VPKQVQFIESALATYPSGIATTIPSDTAF 75 (297)
T ss_dssp CEEEEECSCCCSHHH--HHHHHHHHHHHHHHT-CEEEEEC--CSSS--CC-HHHHHHHHHHHHHTCCSEEEECCCCSSTT
T ss_pred EEEEEEecCCCCchH--HHHHHHHHHHHHHhC-cEEEEEC--CCCc--CC-HHHHHHHHHHHHHcCCCEEEEeCCCHHHH
Confidence 3678887653 455 677888999999999 8876542 1100 01 14455778888888999999834445545
Q ss_pred HHHHHHHHHcCC
Q 006683 246 IHLFTEANRMGL 257 (635)
Q Consensus 246 ~~~l~~a~~~g~ 257 (635)
...++++.+.|+
T Consensus 76 ~~~~~~~~~~gi 87 (297)
T 3rot_A 76 SKSLQRANKLNI 87 (297)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHCCC
Confidence 667778887776
No 227
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=54.62 E-value=31 Score=32.44 Aligned_cols=123 Identities=13% Similarity=0.174 Sum_probs=63.7
Q ss_pred HHHHHhhc-CCeEEEEcCCChhhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHHCC
Q 006683 88 AAQELINK-EKVKVIAGMETWEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARKYN 166 (635)
Q Consensus 88 ~~~~li~~-~~v~aiiG~~~s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~~~ 166 (635)
.+..|. + .++.+|+-+..+.++..+..+-+..++|+|...-. ++...++..+
T Consensus 57 ~~~~L~-~~~g~d~iViACNTas~~~l~~lr~~~~iPVigiiep--------------------------a~~~A~~~~~ 109 (272)
T 1zuw_A 57 LTNYLL-ENHHIKMLVIACNTATAIALDDIQRSVGIPVVGVIQP--------------------------GARAAIKVTD 109 (272)
T ss_dssp HHHHHH-HHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEESHHH--------------------------HHHHHHHHCS
T ss_pred HHHHHH-hhcCCCEEEEeCchhhHHHHHHHHHHCCCCEEcccHH--------------------------HHHHHHHhcC
Confidence 344444 6 89998887666655545666667778999863200 1111122345
Q ss_pred CeEEEEEEEcCCCCCCcchHHHHHHHHhcc--CCeEEEEEee------eCCCCCC-CCchHHHHHHHHhhhhcCceEEEE
Q 006683 167 WRRVAAIYEDNVYGGDSGKLALLAEALQNV--SSSEIQSRLV------LPPISSI-SDPKEAVRGELKKVQDKQSRVFIV 237 (635)
Q Consensus 167 w~~vaii~~~~~~g~~~~~~~~~~~~l~~~--g~~~v~~~~~------~~~~~~~-~d~~~~~~~~l~~l~~~~~~vii~ 237 (635)
-++|+++.....-. ...+++.+++. + .++..... +..+... ......+.+.++.+++.++|+||+
T Consensus 110 ~~rIgVlaT~~T~~-----s~~y~~~i~~~~~~-~~v~~~~~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~iVL 183 (272)
T 1zuw_A 110 NQHIGVIGTENTIK-----SNAYEEALLALNPD-LKVENLACPLLVPFVESGKFLDQTADEIVKTSLYPLKDTSIDSLIL 183 (272)
T ss_dssp SSEEEEEECHHHHH-----TTHHHHHHHHHCTT-CEEEEEECTTHHHHHTSCCCCHHHHHHHHHHHHHHHHHSCCSEEEE
T ss_pred CCEEEEEEChhhhh-----hhHHHHHHHHhCCC-CEEEeccCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 56788877653211 11233334333 4 44432110 1111100 001234566677777778999999
Q ss_pred ecCChhH
Q 006683 238 LQASLDM 244 (635)
Q Consensus 238 ~~~~~~~ 244 (635)
.|..-.
T Consensus 184 -GCTh~p 189 (272)
T 1zuw_A 184 -GCTHYP 189 (272)
T ss_dssp -ESTTGG
T ss_pred -CccCHH
Confidence 666543
No 228
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=54.59 E-value=24 Score=33.41 Aligned_cols=38 Identities=8% Similarity=0.205 Sum_probs=25.6
Q ss_pred HHHHhhcCCeEEEEcCCChhhHHHHHHhhccCCccEEee
Q 006683 89 AQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSF 127 (635)
Q Consensus 89 ~~~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~ip~Is~ 127 (635)
+..+. +.++.+|+-+..+.++..+..+-+..++|+|..
T Consensus 77 ~~~L~-~~g~d~IVIaCNTas~~~l~~lr~~~~iPVigi 114 (286)
T 2jfq_A 77 ARKLM-EFDIKMLVIACNTATAVALEYLQKTLSISVIGV 114 (286)
T ss_dssp HHHHT-TSCCSEEEECCHHHHHHHHHHHHHHCSSEEEES
T ss_pred HHHHH-HCCCCEEEEeCCchhHHHHHHHHHhCCCCEEec
Confidence 33343 689998887666655445666666678999863
No 229
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=54.45 E-value=29 Score=30.62 Aligned_cols=69 Identities=9% Similarity=0.087 Sum_probs=45.9
Q ss_pred ceeHHHHHHHHHHC-CCcccEEEecCCCChhhHHHHHHcCcccEEEecccccccccccccccccceeeeeEEEEeCCC
Q 006683 489 GFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQ 565 (635)
Q Consensus 489 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~ 565 (635)
.+-.+++..+.++. +.+ +.+.. ++...++..|.+|++|+++...... ...+. +.|+....++++++++.
T Consensus 18 ~~l~~~l~~f~~~~P~v~--l~l~~--~~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~~~~~~v~~~~h 87 (219)
T 1i6a_A 18 YLLPHIIPMLHQTFPKLE--MYLHE--AQTHQLLAQLDSGKLDAVILALVKE---SEAFI-EVPLFDEPMLLAIYEDH 87 (219)
T ss_dssp HHHHHHHHHHHHHCTTEE--EEEEE--CCHHHHHHHHHHTSCSEEEEECCGG---GTTSE-EEEEEEEEEEEEEETTS
T ss_pred hhhhHHHHHHHHHCCCeE--EEEEE--CChHHHHHHHHcCCeeEEEecCCCC---CCCcc-eeeeecccEEEEEcCCC
Confidence 45568888888776 444 44443 2377899999999999998643221 12222 24777788888887764
No 230
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=53.65 E-value=36 Score=30.56 Aligned_cols=69 Identities=7% Similarity=-0.116 Sum_probs=48.4
Q ss_pred ceeHHHHHHHHHHC-CCcccEEEecCCCChhhHHHHHHcCcccEEEecccccccccccccccccceeeeeEEEEeCCCCC
Q 006683 489 GFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEE 567 (635)
Q Consensus 489 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~~ 567 (635)
.+-.+++..+.++. +.++++.. ++...+...|.+|++|+++...... . --+.+.....++++++++.+.
T Consensus 40 ~~l~~~l~~f~~~~P~i~l~i~~----~~~~~~~~~L~~g~~Dl~i~~~~~~-----~-~~~~~l~~~~~~~v~~~~~~l 109 (238)
T 3onm_A 40 TLLPFLLNRVATLYPRLAIDVRV----KRSPFIADMLSSGEVDLAITTAKVD-----S-HPHVILRTSPTLWYCSVDYQF 109 (238)
T ss_dssp THHHHHHHHHHHHCTTCCEEEEE----CCHHHHHHHHHHTSCSEEEECSCC------C-CCEEEEEEECEEEEEETTCCC
T ss_pred HHHHHHHHHHHHHCCCcEEEEEE----CCHHHHHHHHHCCCccEEEEecCCC-----C-cceEEeecCCEEEEEcCCCCc
Confidence 34568888888776 56644443 2377899999999999998654321 1 234578888999999887654
No 231
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=53.48 E-value=12 Score=35.96 Aligned_cols=81 Identities=15% Similarity=0.032 Sum_probs=52.2
Q ss_pred eEEEEEEEc--CCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHH
Q 006683 168 RRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (635)
Q Consensus 168 ~~vaii~~~--~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~ 245 (635)
++|+++..+ ++|. ....+.+++.+++.| .++.... +... + ......+++.+...++|.||+...+....
T Consensus 4 ~~Igvi~~~~~~~~~--~~~~~g~~~~~~~~g-~~~~~~~--~~~~---d-~~~q~~~i~~li~~~vdgiii~~~~~~~~ 74 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFF--TSGGNGAQEAGKALG-IDVTYDG--PTEP---S-VSGQVQLVNNFVNQGYDAIIVSAVSPDGL 74 (316)
T ss_dssp CEEEEECSSSSSHHH--HHHHHHHHHHHHHHT-CEEEECC--CSSC---C-HHHHHHHHHHHHHTTCSEEEECCSSSSTT
T ss_pred CEEEEEeCCCCChHH--HHHHHHHHHHHHHhC-CEEEEEC--CCCC---C-HHHHHHHHHHHHHcCCCEEEEeCCCHHHH
Confidence 578888754 3455 666778888888899 7765321 1111 1 13345677888888999988834444444
Q ss_pred HHHHHHHHHcCC
Q 006683 246 IHLFTEANRMGL 257 (635)
Q Consensus 246 ~~~l~~a~~~g~ 257 (635)
...++.+.+.|+
T Consensus 75 ~~~~~~a~~~gi 86 (316)
T 1tjy_A 75 CPALKRAMQRGV 86 (316)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCcC
Confidence 667778887775
No 232
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=53.20 E-value=20 Score=30.41 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=28.3
Q ss_pred HHHHHhhhhhcccCCCCCCCcccccchhhHhHHHHhhccC-CCCCC
Q 006683 590 YTMFIVWLLEHQSNPEFRGTLKDQISNILWFAFSTIFFSH-SEYPL 634 (635)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~q~-~~~~~ 634 (635)
+.++++|.+|+..+. +...++.+++||++.++.--| |+..|
T Consensus 65 ~~a~~~~~~E~~~~~----~~~~s~~~a~y~s~vTltTVGYGDi~P 106 (155)
T 2a9h_A 65 AGSYLAVLAERGAPG----AALISYPDALWWSVETATTVGYGDLYP 106 (155)
T ss_dssp HHHHHHHHHHTTSSC----SSTTSHHHHHHHHHHHHTTCCCSSSCC
T ss_pred HHHHHHHHHhccCCC----CccCcccceeheeeeeeecccCCCCCC
Confidence 335567777875422 233468999999999999888 55544
No 233
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=52.38 E-value=53 Score=30.72 Aligned_cols=37 Identities=14% Similarity=0.319 Sum_probs=26.2
Q ss_pred HHHHhhcCCeEEEEcCCChhhHHHHHHhhccCCccEEe
Q 006683 89 AQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILS 126 (635)
Q Consensus 89 ~~~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~ip~Is 126 (635)
+..|. +.++.+|+-+..+.++..+..+-+..++|+|.
T Consensus 60 ~~~L~-~~g~~~IVIACNTa~~~al~~lr~~~~iPvig 96 (269)
T 3ist_A 60 TNFLV-DRGIKMLVIACNTATAAALYDIREKLDIPVIG 96 (269)
T ss_dssp HHHHH-HTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHH-HCCCCEEEEeCCCccHHHHHHHHHhcCCCEEe
Confidence 33444 78999999766666554566666778899986
No 234
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=51.83 E-value=27 Score=32.78 Aligned_cols=80 Identities=11% Similarity=0.061 Sum_probs=50.9
Q ss_pred eEEEEEEEc--CCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHH
Q 006683 168 RRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (635)
Q Consensus 168 ~~vaii~~~--~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~ 245 (635)
++|+++..+ ++|. ..+.+.+++.+++.| ..+.... . .. + .......++.+.+.++|.||+........
T Consensus 3 ~~Ig~i~~~~~~~~~--~~~~~gi~~~~~~~g-~~~~~~~--~-~~---~-~~~~~~~~~~l~~~~vdgiI~~~~~~~~~ 72 (290)
T 2fn9_A 3 GKMAIVISTLNNPWF--VVLAETAKQRAEQLG-YEATIFD--S-QN---D-TAKESAHFDAIIAAGYDAIIFNPTDADGS 72 (290)
T ss_dssp CEEEEEESCSSSHHH--HHHHHHHHHHHHHTT-CEEEEEE--C-TT---C-HHHHHHHHHHHHHTTCSEEEECCSCTTTT
T ss_pred eEEEEEeCCCCChHH--HHHHHHHHHHHHHcC-CEEEEeC--C-CC---C-HHHHHHHHHHHHHcCCCEEEEecCChHHH
Confidence 468888764 3455 677888889999999 7765432 1 11 1 13345667777778899998833333333
Q ss_pred HHHHHHHHHcCC
Q 006683 246 IHLFTEANRMGL 257 (635)
Q Consensus 246 ~~~l~~a~~~g~ 257 (635)
...++.+.+.++
T Consensus 73 ~~~~~~~~~~~i 84 (290)
T 2fn9_A 73 IANVKRAKEAGI 84 (290)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 456667776665
No 235
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=51.72 E-value=39 Score=31.37 Aligned_cols=117 Identities=13% Similarity=0.063 Sum_probs=72.7
Q ss_pred EEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhc-CCeEEEEcCCChhhHHHH
Q 006683 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAVV 113 (635)
Q Consensus 35 i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~v 113 (635)
=+|+++...... ...-..|++.++++.+-. +...+.....+...+.+.+.+++.. ..+.+|+.. +...+..+
T Consensus 119 ~~i~~i~~~~~~-~~~R~~gf~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~g~ 191 (280)
T 3gyb_A 119 THIAHLRVGSGA-GLRRFESFEATMRAHGLE-----PLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSS-NDITAIGA 191 (280)
T ss_dssp CSEEEECCSSHH-HHHHHHHHHHHHHHTTCC-----CEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEES-SHHHHHHH
T ss_pred CeEEEEeCCCch-HHHHHHHHHHHHHHcCcC-----CCcccccCCCCHHHHHHHHHHHHhCCCCCCEEEEC-ChHHHHHH
Confidence 368888776644 566678888888876433 2222345566788888888888854 568899974 34444445
Q ss_pred HHhhccC------CccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH
Q 006683 114 AEIASRV------QVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA 162 (635)
Q Consensus 114 ~~~~~~~------~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l 162 (635)
...+.+. ++.++++... + +.....|-+-.+..+...++...+++|
T Consensus 192 ~~al~~~g~~vP~di~vvg~d~~---~-~~~~~~p~lttv~~~~~~~g~~av~~l 242 (280)
T 3gyb_A 192 LGAARELGLRVPEDLSIIGYDNT---P-LAQTRLINLTTIDDNSIGVGYNAALLL 242 (280)
T ss_dssp HHHHHHHTCCTTTTCEEEEESCC---H-HHHSTTTCCCEEECCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCeeEEEEECCc---h-HhhccCCCceEEecCHHHHHHHHHHHH
Confidence 4444443 3457776544 2 333223444556677777777777766
No 236
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=51.70 E-value=71 Score=23.69 Aligned_cols=53 Identities=11% Similarity=0.270 Sum_probs=32.3
Q ss_pred EEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEE
Q 006683 144 LIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQ 202 (635)
Q Consensus 144 ~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~ 202 (635)
+.-+.-++...+.....+++.+|..-..+||+.| +..++.|....++.| .++.
T Consensus 53 ivvvvvddkewaekairfvkslgaqvliiiydqd-----qnrleefsrevrrrg-fevr 105 (134)
T 2l69_A 53 IVVVVVDDKEWAEKAIRFVKSLGAQVLIIIYDQD-----QNRLEEFSREVRRRG-FEVR 105 (134)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHCCCCEEEEECSC-----HHHHHHHHHHHHHTT-CCEE
T ss_pred EEEEEEccHHHHHHHHHHHHhcCCeEEEEEEeCc-----hhHHHHHHHHHHhcC-ceEE
Confidence 3334455566666666777777766666666554 334666666677777 5543
No 237
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=51.62 E-value=1.3e+02 Score=28.71 Aligned_cols=120 Identities=9% Similarity=0.039 Sum_probs=71.7
Q ss_pred EEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhc-CCeEEEEcCCChhhHHHH
Q 006683 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAVV 113 (635)
Q Consensus 35 i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~v 113 (635)
=+||++..........-..|++.|+++.+-..+. ..+ +.....+...+.+.+.+++.. .++.+|+. .+...+..+
T Consensus 179 ~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~--~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~ 254 (339)
T 3h5o_A 179 RRIGFLGAQLDERVMKRLDGYRAALDAADCRDAG--LEW-LDPQPSSMQMGADMLDRALAERPDCDALFC-CNDDLAIGA 254 (339)
T ss_dssp CSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGG--GEE-EECSCCCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHH
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCC--hhe-EecCCCCHHHHHHHHHHHHcCCCCCcEEEE-CChHHHHHH
Confidence 3577776654333345567888888876542212 222 224456777788888888854 57889997 444455555
Q ss_pred HHhhccCC------ccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH
Q 006683 114 AEIASRVQ------VPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA 162 (635)
Q Consensus 114 ~~~~~~~~------ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l 162 (635)
...+.+.+ +.++++... .+.....|-+-.+..+...++...+++|
T Consensus 255 ~~al~~~G~~vP~disvvgfD~~----~~~~~~~p~lttv~~~~~~~g~~Av~~L 305 (339)
T 3h5o_A 255 LARSQQLGIAVPERLAIAGFNDL----QPAAWCTPPLTTVATPRRDIGVHAAKAL 305 (339)
T ss_dssp HHHHHHTTCCTTTTCEEECSBCC----GGGTTSSSCCBEEECCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCEEEEEECCH----HHHhccCCCceEEEeCHHHHHHHHHHHH
Confidence 55555544 335655433 3333333555566777777888777776
No 238
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=51.29 E-value=23 Score=34.51 Aligned_cols=80 Identities=6% Similarity=0.129 Sum_probs=54.4
Q ss_pred CeEEEEEEEcC---CCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhh--cCceEEEEecCC
Q 006683 167 WRRVAAIYEDN---VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD--KQSRVFIVLQAS 241 (635)
Q Consensus 167 w~~vaii~~~~---~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~--~~~~vii~~~~~ 241 (635)
-.+|++|..+. +|. ..+.+.+++.+++.| ..+.... ... + .......++.+.+ .++|.||+ ...
T Consensus 3 ~~~Ig~i~p~~~~~~f~--~~~~~g~~~~a~~~g-~~~~~~~--~~~----~-~~~~~~~i~~~i~~~~~vDgiIi-~~~ 71 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFW--VSYSQFMQAAARDLG-LDLRILY--AER----D-PQNTLQQARELFQGRDKPDYLML-VNE 71 (350)
T ss_dssp CCEEEEEECSCTTCHHH--HHHHHHHHHHHHHHT-CEEEEEE--CTT----C-HHHHHHHHHHHHHSSSCCSEEEE-ECC
T ss_pred CCEEEEECCCCCCChHH--HHHHHHHHHHHHHcC-CeEEEEE--CCC----C-HHHHHHHHHHHHhcCCCCCEEEE-eCc
Confidence 35788888753 455 677888999999999 8776542 111 1 1334556777776 58999998 655
Q ss_pred hhHHHHHHHHHHHcCC
Q 006683 242 LDMTIHLFTEANRMGL 257 (635)
Q Consensus 242 ~~~~~~~l~~a~~~g~ 257 (635)
......+++.+.+.|+
T Consensus 72 ~~~~~~~~~~~~~~gi 87 (350)
T 3h75_A 72 QYVAPQILRLSQGSGI 87 (350)
T ss_dssp SSHHHHHHHHHTTSCC
T ss_pred hhhHHHHHHHHHhCCC
Confidence 5566677777877776
No 239
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=51.19 E-value=31 Score=32.94 Aligned_cols=62 Identities=15% Similarity=0.084 Sum_probs=44.1
Q ss_pred HHHHHHHHHHCCCcccEEEecCC--CChhhHHHHHHcCcccEEEeccccccccccccc-ccccce
Q 006683 492 IELFRLVVDHLNYDLPYEFVPHD--GVYDDLINGVYDKTYDAAVGDLTILGNRTEYVE-FTQPYA 553 (635)
Q Consensus 492 ~dl~~~la~~l~~~~~~~~~~~~--~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~-fs~p~~ 553 (635)
..+.+++.++.|-++++++.+.. |+-..++..+..|.+||+.........+...+. |+.||.
T Consensus 21 ~~fa~~v~e~s~G~i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~lPfl 85 (301)
T 2pfy_A 21 RQFADEVKAATAGALEIKVQSNSTLLKRPEVKRGVQQGVVQIGEVLVSALGNEDPLFEIDSVPFL 85 (301)
T ss_dssp HHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEEEEGGGGTTTCGGGGGGGSTTT
T ss_pred HHHHHHHHHHcCCeEEEEEccchhhCChHHHHHHHHCCCeeeehhhhhhhhccCcccccccCCcc
Confidence 36778888999988888877642 345789999999999999877655554443333 344553
No 240
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=50.99 E-value=1.2e+02 Score=27.76 Aligned_cols=85 Identities=12% Similarity=0.009 Sum_probs=46.4
Q ss_pred EEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCC-------CCHHHHH----HHHHHHhhcCCeEEEEc
Q 006683 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHN-------RDPFQAA----TAAQELINKEKVKVIAG 103 (635)
Q Consensus 35 i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~-------~~~~~a~----~~~~~li~~~~v~aiiG 103 (635)
.||.+|-|.++. .+-..+..+++.+. +|+.++.....+.+ .+...+. +.+.++. +.++.+|+-
T Consensus 2 mrilvINPnts~---~~T~~i~~~~~~~~--~p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~-~~g~d~ivi 75 (245)
T 3qvl_A 2 VRIQVINPNTSL---AMTETIGAAARAVA--APGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGR-EQGVDGHVI 75 (245)
T ss_dssp EEEEEECSSCCH---HHHHHHHHHHHHHC--CTTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHH-HHTCSEEEE
T ss_pred CEEEEEeCCCCH---HHHHHHHHHHHHhc--CCCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHH-HCCCCEEEE
Confidence 589999998853 34445555555554 45777776655533 1222222 2222332 568887776
Q ss_pred CCChhhHHHHHHhhccCCccEEee
Q 006683 104 METWEETAVVAEIASRVQVPILSF 127 (635)
Q Consensus 104 ~~~s~~~~~v~~~~~~~~ip~Is~ 127 (635)
...+.... ..+-+..++|+|..
T Consensus 76 aCnt~~~l--~~lr~~~~iPvigi 97 (245)
T 3qvl_A 76 ASFGDPGL--LAARELAQGPVIGI 97 (245)
T ss_dssp C-CCCTTH--HHHHHHCSSCEEEH
T ss_pred eCCChhHH--HHHHHHcCCCEECc
Confidence 55544332 33334567888854
No 241
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=50.91 E-value=32 Score=30.56 Aligned_cols=70 Identities=11% Similarity=0.002 Sum_probs=48.0
Q ss_pred ceeHHHHHHHHHHC-CCcccEEEecCCCChhhHHHHHHcCcccEEEecccccccccccccccccceeeeeEEEEeCCCC
Q 006683 489 GFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (635)
Q Consensus 489 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (635)
.+-.+++..+.++. +.+ +.+.. ++...+..+|.+|++|+++....... +.+. +.+.....++++++++.+
T Consensus 24 ~~l~~~l~~~~~~~P~v~--i~~~~--~~~~~~~~~l~~g~~Dl~i~~~~~~~---~~l~-~~~l~~~~~~~v~~~~hp 94 (232)
T 3ho7_A 24 YLLPRVFPIWKKELAGLE--IHVSE--MQTSRCLASLLSGEIDMAIIASKAET---EGLE-DDLLYYEEFLGYVSRCEP 94 (232)
T ss_dssp HHHHHHHHHHHHHSTTEE--EEEEE--CCHHHHHHHHHHTSCSEEEESSCCCC---TTEE-EEEEEEEEEEEEECTTSG
T ss_pred hhhHHHHHHHHHHCCCcE--EEEEe--CCHHHHHHHHHcCCCCEEEEcCCCCC---CCeE-EEEecccCEEEEEcCCCc
Confidence 35567888887776 455 44443 23678999999999999987554332 2222 357888899999987753
No 242
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=50.49 E-value=6.3 Score=38.49 Aligned_cols=64 Identities=13% Similarity=0.175 Sum_probs=19.2
Q ss_pred CCchhHHHHHHHHHH--HHhccccccccCCCCCCCeEEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEE
Q 006683 1 MNRFFFLVLIIASEL--VFVSPGVESASTNVNIEEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQI 75 (635)
Q Consensus 1 m~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~ 75 (635)
|||+.++++++++++ ++++|+..... ..+++|+|..- ++ ......+..+++.++.. |++|+++.
T Consensus 4 Mkk~~~~~~~~~~~~~~~lagC~~~~~~---~~~~~l~v~~~---~~----~~~~~~~~~~~~f~~~~-gi~V~~~~ 69 (351)
T 4edp_A 4 MKKKILATLLTGLVLGTSLVGCGKTEGA---EAGKKLVVSTW---GL----NEDVLKETVFEPFAKEH-GVEIVLDI 69 (351)
T ss_dssp -----------------------------------CEEEEEC---CT----THHHHHHHTHHHHHHHH-TCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhheeCCCCcc---CCCCeEEEEEc---cC----cHHHHHHHHHHHHHHHH-CCEEEEEe
Confidence 676654433333322 33444432211 12467877433 11 12234445566666665 77888864
No 243
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=50.11 E-value=24 Score=33.68 Aligned_cols=80 Identities=15% Similarity=0.086 Sum_probs=49.5
Q ss_pred EEEEEEEcCC-CCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHHHH
Q 006683 169 RVAAIYEDNV-YGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMTIH 247 (635)
Q Consensus 169 ~vaii~~~~~-~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~~~ 247 (635)
+|+++..+.. |. ..+.+.+++.+++.| .++.... +... + .......++.+...++|.||+..........
T Consensus 3 ~Ig~i~~~~~~~~--~~~~~gi~~~~~~~g-~~~~~~~--~~~~---~-~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~ 73 (313)
T 2h3h_A 3 TIGVIGKSVHPYW--SQVEQGVKAAGKALG-VDTKFFV--PQKE---D-INAQLQMLESFIAEGVNGIAIAPSDPTAVIP 73 (313)
T ss_dssp EEEEECSCSSHHH--HHHHHHHHHHHHHHT-CEEEEEC--CSSS---C-HHHHHHHHHHHHHTTCSEEEECCSSTTTTHH
T ss_pred EEEEEeCCCcHHH--HHHHHHHHHHHHHcC-CEEEEEC--CCCC---C-HHHHHHHHHHHHHcCCCEEEEeCCChHHHHH
Confidence 5677764322 55 667788888888899 7765432 1111 1 1334566777777789998883344444445
Q ss_pred HHHHHHHcCC
Q 006683 248 LFTEANRMGL 257 (635)
Q Consensus 248 ~l~~a~~~g~ 257 (635)
.++.+.+.++
T Consensus 74 ~~~~~~~~~i 83 (313)
T 2h3h_A 74 TIKKALEMGI 83 (313)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHCCC
Confidence 6777777665
No 244
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=49.95 E-value=16 Score=35.96 Aligned_cols=86 Identities=13% Similarity=0.159 Sum_probs=54.5
Q ss_pred ceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHH
Q 006683 142 PYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVR 221 (635)
Q Consensus 142 p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~ 221 (635)
|.-+...+.. ...+.++++.++.+++.+|++... ....+.+.+.+++.+ +.+ +.. +.+.. ..+...
T Consensus 12 p~~i~~G~g~---~~~l~~~l~~~g~~r~liVtd~~~----~~~~~~v~~~L~~~~-~~v-~~~-v~~~p----~~~~v~ 77 (353)
T 3hl0_A 12 PARIVFSAGS---SADVAEEIRRLGLSRALVLSTPQQ----KGDAEALASRLGRLA-AGV-FSE-AAMHT----PVEVTK 77 (353)
T ss_dssp CCCEEECTTG---GGGHHHHHHHTTCCCEEEECCGGG----HHHHHHHHHHHGGGE-EEE-ECC-CCTTC----BHHHHH
T ss_pred CceEEECcCH---HHHHHHHHHHhCCCEEEEEecCch----hhHHHHHHHHHhhCC-cEE-ecC-cCCCC----cHHHHH
Confidence 3334444443 234677888899899999987653 335677888888766 543 211 11111 225677
Q ss_pred HHHHhhhhcCceEEEEecCCh
Q 006683 222 GELKKVQDKQSRVFIVLQASL 242 (635)
Q Consensus 222 ~~l~~l~~~~~~vii~~~~~~ 242 (635)
+.++.+++.++|+||- .+.+
T Consensus 78 ~~~~~~~~~~~D~IIa-vGGG 97 (353)
T 3hl0_A 78 TAVEAYRAAGADCVVS-LGGG 97 (353)
T ss_dssp HHHHHHHHTTCSEEEE-EESH
T ss_pred HHHHHHhccCCCEEEE-eCCc
Confidence 7888888889999987 5554
No 245
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=49.19 E-value=41 Score=31.65 Aligned_cols=81 Identities=14% Similarity=0.159 Sum_probs=51.1
Q ss_pred HHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccEEEeccccc-c------cccccccccccceeeeeEEEEeCC
Q 006683 492 IELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTIL-G------NRTEYVEFTQPYAESGFSMIVPAK 564 (635)
Q Consensus 492 ~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~-~------~r~~~~~fs~p~~~~~~~~~v~~~ 564 (635)
.++++.+-+.+|++++++ +. +-.-+...|.+|++|+........ . .+.+......-+....+.++||+.
T Consensus 32 ~~i~~~~Le~~G~~Ve~~--~~--~~~~~~~AL~~G~iD~~~e~w~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~V~~~ 107 (280)
T 3tmg_A 32 TNVLKVVFEKMGYNAEIF--SV--TTSIMYQYLASGKIDGTVSSWVPTADKFYYEKLKTKFVDLGANYEGTIQGFVVPSY 107 (280)
T ss_dssp HHHHHHHHHHTTEEEEEE--EC--CHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHHGGGEEEEEEEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHCCCceEEE--EC--CcHHHHHHHHCCCCcEEEeccCCcccHHHHHHhcCcEEEccccCCCceEEEEECCC
Confidence 567777777799886664 32 245688999999999977643322 1 112233333334445689999998
Q ss_pred CCCCcceeecCC
Q 006683 565 QEESTWMFTKPF 576 (635)
Q Consensus 565 ~~~~~~~~l~pf 576 (635)
.....++.|+..
T Consensus 108 ~~i~sisDL~~~ 119 (280)
T 3tmg_A 108 VPISSISELKGK 119 (280)
T ss_dssp SCCCBGGGGTTC
T ss_pred CCCCCHHHHHhh
Confidence 766666666543
No 246
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=49.03 E-value=46 Score=29.70 Aligned_cols=70 Identities=9% Similarity=0.113 Sum_probs=46.5
Q ss_pred ceeHHHHHHHHHHC-CCcccEEEecCCCChhhHHHHHHcCcccEEEecccccccccccccccccceeeeeEEEEeCCCC
Q 006683 489 GFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (635)
Q Consensus 489 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (635)
.+-..++..+.++. +.+ +.+.. ++...++.+|.+|++|+++...... .+.+. +.+.....++++++++.+
T Consensus 43 ~~l~~~l~~f~~~~P~v~--l~~~~--~~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~~~~~~v~~~~hp 113 (238)
T 2hxr_A 43 YFIGPLMADFYARYPSIT--LQLQE--MSQEKIEDMLCRDELDVGIAFAPVH---SPELE-AIPLLTESLALVVAQHHP 113 (238)
T ss_dssp TTHHHHHHHHHHHCTTSC--EEEEE--CCHHHHHHHHHTTSCSEEEEESSCC---CTTEE-EEEEEEEEEEEEEETTSG
T ss_pred HHHHHHHHHHHHhCCCcE--EEEEE--CCHHHHHHHHHcCCCcEEEEcCCCC---cccce-eeeeccCcEEEEEcCCCc
Confidence 34567888888876 555 44443 2367789999999999998643221 22222 357788888999887653
No 247
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=48.23 E-value=20 Score=31.68 Aligned_cols=70 Identities=11% Similarity=0.087 Sum_probs=47.0
Q ss_pred ceeHHHHHHHHHHC-CCcccEEEecCCCChhhHHHHHHcCcccEEEecccccccccccccccccceeeeeEEEEeCCCC
Q 006683 489 GFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (635)
Q Consensus 489 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (635)
.+-.+++..+.++. +.+ +.+.. ++...+...|.+|++|+++...... ...+. +.++....++++++++.+
T Consensus 21 ~~l~~~l~~f~~~~P~i~--i~i~~--~~~~~~~~~l~~g~~Di~i~~~~~~---~~~~~-~~~l~~~~~~~v~~~~~p 91 (222)
T 4ab5_A 21 DWLMPAMGEFRPMWPQVE--LDIVS--GFQADPVGLLLQHRADLAIVSEAEK---QNGIS-FQPLFAYEMVGICAPDHP 91 (222)
T ss_dssp HHHHHHHHHHHHHSTTEE--EEEEC--CCCSCTHHHHHTTSCSEEEESCCCC---CTTEE-EEEEEEEEEEEEECTTSG
T ss_pred HHHHHHHHHHHHHCCCcE--EEEec--CCHHHHHHHHHcCCcCEEEecCCCC---cCCeE-EEEeecCcEEEEecCCCh
Confidence 34567888888776 555 44443 2345799999999999998753322 22222 357888889999987753
No 248
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=48.17 E-value=39 Score=29.40 Aligned_cols=68 Identities=13% Similarity=0.058 Sum_probs=45.1
Q ss_pred eeHHHHHHHHHHC-CCcccEEEecCCCChhhHHHHHHcCcccEEEecccccccccccccccccceeeeeEEEEeCCC
Q 006683 490 FSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQ 565 (635)
Q Consensus 490 ~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~ 565 (635)
+-.+++..+.++. +.+ +.+.. ++...+..+|.+|++|+++...... ...+. +.+.....++++++++.
T Consensus 19 ~l~~~l~~f~~~~P~i~--i~l~~--~~~~~l~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~~~~~~v~~~~h 87 (209)
T 2ql3_A 19 ILPSMLYAFTAEYPRAS--VEFRE--DTQNRLRTQLEGGELDVAIVYDLDL---SPEWQ-TVPLMTREPMVVLGAEH 87 (209)
T ss_dssp THHHHHHHHHHHCTTEE--EEEEE--CCHHHHHHHHHTTSCSEEEEESSSC---CTTEE-EEEEEEECCEEEEETTC
T ss_pred hHHHHHHHHHHHCCCce--EEEEE--CcHHHHHHHHHcCCccEEEEecCCC---CCCce-EEEeecCceEEEEeCCC
Confidence 4568888888876 455 44443 2367889999999999998643211 12222 34777888888887654
No 249
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=47.83 E-value=18 Score=34.59 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=26.3
Q ss_pred CCeEEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHH
Q 006683 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAA 86 (635)
Q Consensus 32 ~~~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~ 86 (635)
..+|+||.. .... .....++ +.+-+. |++++++..++...+..|+
T Consensus 38 ~~~i~IG~~-~~~~----~~~~~~~---~~~~~~--G~~Ve~~~f~~~~~~~~AL 82 (295)
T 1p99_A 38 DKKVTIGVA-SNDT----KAWEKVK---ELAKKD--DIDVEIKHFSDYNLPNKAL 82 (295)
T ss_dssp --CEEEEES-SSCC----HHHHHHH---HHHGGG--TCCEEEEECSSTTSHHHHH
T ss_pred CCeEEEEEe-CCcH----HHHHHHH---HHHHHc--CCeEEEEEeCChHHHHHHH
Confidence 457999988 3221 2222222 344444 6899999998877765443
No 250
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=47.74 E-value=37 Score=31.80 Aligned_cols=71 Identities=8% Similarity=0.031 Sum_probs=45.8
Q ss_pred HHHHHHHHHC-CCcccEEEecCCCChhhHHHHHHcCcccEEEecccccccccccccccccceeeeeEEEEeCCCCC
Q 006683 493 ELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQEE 567 (635)
Q Consensus 493 dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~~ 567 (635)
++.+++.+.. +.++++.. .| -.+.+.++.+|.+|++.++-.+..+..+.-.-..|+...+++++++++++.
T Consensus 53 ~~a~~f~~~~p~v~v~~~~---~G-Sg~g~~~~~~G~~di~~as~~~~~~e~~~~~~~~~ia~d~~~vivn~~n~~ 124 (279)
T 4gd5_A 53 AEAEAFKTKKPDVSIEINQ---IG-SSAGIKNAMEGVSEIGMASRDLKGEEKQAGLKEVEIAYDGIALITHKNNPV 124 (279)
T ss_dssp HHHHHHHHHSTTCEEEEEE---CC-HHHHHHHHHHTSSSEEEESSCCCHHHHTTCCEEEEEEEEEEEEEEETTCSC
T ss_pred HHHHHHHHHCCCceEEEee---CC-cHHHHHHHHcCCCcEEEecchhhhhHhhcCceEEEEEeeceeeeeccCCcc
Confidence 3334444443 56644433 33 456788999999999988766655443333334578889999999887654
No 251
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=47.67 E-value=16 Score=36.07 Aligned_cols=75 Identities=12% Similarity=0.106 Sum_probs=49.7
Q ss_pred HHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEE
Q 006683 156 KCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVF 235 (635)
Q Consensus 156 ~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vi 235 (635)
..+.++++.++.+++.+|++.... ...+.+.+.+++.+ +.+ +.. +.+.. ..+...+.++.+++.++|+|
T Consensus 25 ~~l~~~l~~~g~~r~liVtd~~~~----~~~~~v~~~L~~~~-~~~-f~~-v~~~p----~~~~v~~~~~~~~~~~~D~I 93 (358)
T 3jzd_A 25 SQVAAEVERLGAKRALVLCTPNQQ----AEAERIADLLGPLS-AGV-YAG-AVMHV----PIESARDATARAREAGADCA 93 (358)
T ss_dssp GGHHHHHHHTTCSCEEEECCGGGH----HHHHHHHHHHGGGE-EEE-ECC-CCTTC----BHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHhCCCeEEEEeCCcHH----HHHHHHHHHhccCC-EEE-ecC-CcCCC----CHHHHHHHHHHhhccCCCEE
Confidence 346778888999999999876543 34677888887766 432 211 11111 22567778888888899998
Q ss_pred EEecCCh
Q 006683 236 IVLQASL 242 (635)
Q Consensus 236 i~~~~~~ 242 (635)
|- .+.+
T Consensus 94 Ia-vGGG 99 (358)
T 3jzd_A 94 VA-VGGG 99 (358)
T ss_dssp EE-EESH
T ss_pred EE-eCCc
Confidence 87 5554
No 252
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=46.92 E-value=34 Score=32.57 Aligned_cols=61 Identities=13% Similarity=0.010 Sum_probs=42.5
Q ss_pred HHHHHHHHHHCCCcccEEEecCC--CChhhHHHHHHcCcccEEEeccccccccccccc-ccccc
Q 006683 492 IELFRLVVDHLNYDLPYEFVPHD--GVYDDLINGVYDKTYDAAVGDLTILGNRTEYVE-FTQPY 552 (635)
Q Consensus 492 ~dl~~~la~~l~~~~~~~~~~~~--~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~-fs~p~ 552 (635)
..+.+++.++.|-++++.+.+.. |.-..++..+..|.+||+.........+...+. |+.||
T Consensus 20 ~~fa~~v~~~s~G~i~i~~~~~g~Lg~~~~~~~~v~~G~id~~~~~~~~~~~~~p~~~~~~lPf 83 (301)
T 2pfz_A 20 TQFVKDVDSLSGGKLKITLHNNASLYKAPEIKRAVQGNQAQIGEILLTNFANEDPVYELDGLPF 83 (301)
T ss_dssp HHHHHHHHHHHTTSCEEEEECTTSSSCGGGHHHHHHTTSSSEEEEEGGGGTTTCGGGTGGGSTT
T ss_pred HHHHHHHHHHcCCeEEEEEccCcccCChHHHHHHHHCCceeeEechhhhccccCchhhhhcCCC
Confidence 35678888888888888877642 346789999999999999877655444443332 33454
No 253
>1ixh_A Phosphate-binding protein; phosphate transport, ultra high resolution, phosphate bindin protein; 0.98A {Escherichia coli} SCOP: c.94.1.1 PDB: 2abh_A 1a54_A* 1a55_A 1ixi_A 1quk_A 1ixg_A 1oib_A 1pbp_A 1qul_A 1qui_A 1quj_A 1a40_A 2z22_X
Probab=46.74 E-value=26 Score=33.79 Aligned_cols=72 Identities=11% Similarity=0.042 Sum_probs=47.7
Q ss_pred eHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccEEEeccccccccccccc-ccccceeeeeEEEEeCCCC
Q 006683 491 SIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVE-FTQPYAESGFSMIVPAKQE 566 (635)
Q Consensus 491 ~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~-fs~p~~~~~~~~~v~~~~~ 566 (635)
--++++.+.+.-+.++++.. . .-...+.++.+|++|+++..-.++.+..+... ...|+....++++++.+.+
T Consensus 16 l~~~~~~f~~~p~v~i~v~~---~-gS~~~~~~l~~g~~Di~~~~~~~~~~e~~~~~l~~~~~~~d~lvvvv~~~~~ 88 (321)
T 1ixh_A 16 YAKWADTYQKETGNKVNYQG---I-GSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIGGVVLAVNIPGL 88 (321)
T ss_dssp HHHHHHHHHHHHCCEEEEEE---C-CHHHHHHHHHTTCSSEEEESSCCCHHHHHHHTEEEEEEEEEEEEEEECCTTC
T ss_pred HHHHHHHHHhcCCceEEEec---C-CCHHHHHHHHcCCCcEEecccCCChhhHhhCCCEEeeeeeeeEEEEEeCCCC
Confidence 34555666554466644432 2 25678999999999999887776655422111 2368999999999987643
No 254
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=46.45 E-value=57 Score=30.45 Aligned_cols=79 Identities=9% Similarity=0.087 Sum_probs=54.6
Q ss_pred eEEEEEEEcC--CCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCCh-h-
Q 006683 168 RRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL-D- 243 (635)
Q Consensus 168 ~~vaii~~~~--~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~-~- 243 (635)
+.|+++..+. +|. ..+.+.+.+.+++.| ..+..... ... .......++.+.+.++|.||+ .... .
T Consensus 16 ~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~--~~~-----~~~~~~~~~~l~~~~vdgiIi-~~~~~~~ 84 (298)
T 3tb6_A 16 KTIGVLTTYISDYIF--PSIIRGIESYLSEQG-YSMLLTST--NNN-----PDNERRGLENLLSQHIDGLIV-EPTKSAL 84 (298)
T ss_dssp CEEEEEESCSSSTTH--HHHHHHHHHHHHHTT-CEEEEEEC--TTC-----HHHHHHHHHHHHHTCCSEEEE-CCSSTTS
T ss_pred ceEEEEeCCCCchHH--HHHHHHHHHHHHHCC-CEEEEEeC--CCC-----hHHHHHHHHHHHHCCCCEEEE-ecccccc
Confidence 7899998763 455 677889999999999 77765421 111 134567788888889999998 4432 1
Q ss_pred --HHHHHHHHHHHcCC
Q 006683 244 --MTIHLFTEANRMGL 257 (635)
Q Consensus 244 --~~~~~l~~a~~~g~ 257 (635)
.....++.+.+.++
T Consensus 85 ~~~~~~~~~~~~~~~i 100 (298)
T 3tb6_A 85 QTPNIGYYLNLEKNGI 100 (298)
T ss_dssp CCTTHHHHHHHHHTTC
T ss_pred cCCcHHHHHHHHhcCC
Confidence 34456777777776
No 255
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=46.11 E-value=32 Score=33.87 Aligned_cols=60 Identities=7% Similarity=0.022 Sum_probs=44.0
Q ss_pred HHHHHHHHHCCCcccEEEecCC--CChhhHHHHHHcCcccEEEecccccccccccccc--cccc
Q 006683 493 ELFRLVVDHLNYDLPYEFVPHD--GVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEF--TQPY 552 (635)
Q Consensus 493 dl~~~la~~l~~~~~~~~~~~~--~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~f--s~p~ 552 (635)
.+.+++.++.|-++++++.+.. |+...++..+..|.+||+..+......+...+.+ +.||
T Consensus 53 ~fa~~v~e~s~G~v~i~~~~~g~Lg~~~~~~eav~~G~iD~~~~~~~~~~~~~p~~~~~~~lPf 116 (365)
T 2hzl_A 53 VLSKMLSEATDGNFQIQVFSAGELVPGLQAADAVTEGTVECCHTVGYYYWGKDPTFALAAAVPF 116 (365)
T ss_dssp HHHHHHHHHTTTSSEEEEECTTTSSCGGGHHHHHHTTSSSEEEECGGGGTTTCTHHHHTTCCTT
T ss_pred HHHHHHHHhcCCeEEEEEecCCcccCHHHHHHHHHcCccceeecchhhhcccChhHhhhhcCCC
Confidence 5778888889878778877742 3578899999999999998776655555544443 3465
No 256
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=45.92 E-value=44 Score=28.88 Aligned_cols=65 Identities=9% Similarity=0.030 Sum_probs=41.5
Q ss_pred EEEEEEEcCC-------CCCC-cchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhh-cCceEEEEec
Q 006683 169 RVAAIYEDNV-------YGGD-SGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQSRVFIVLQ 239 (635)
Q Consensus 169 ~vaii~~~~~-------~g~~-~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~-~~~~vii~~~ 239 (635)
++++|...|. .|.- ...-..+.+.+++.| .++.....++.+. ..+...++...+ .++|+|+. .
T Consensus 17 ~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G-~~v~~~~iV~Dd~------~~i~~al~~~~a~~~~DlVit-t 88 (178)
T 3iwt_A 17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENG-HKIIGYSLVPDDK------IKILKAFTDALSIDEVDVIIS-T 88 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTT-CEEEEEEEECSCH------HHHHHHHHHHHTCTTCCEEEE-E
T ss_pred EEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCC-CEEEEEEEeCCCH------HHHHHHHHHHHhcCCCCEEEe-c
Confidence 6888876541 1100 112456888899999 9988877766543 556666665543 47899998 5
Q ss_pred CC
Q 006683 240 AS 241 (635)
Q Consensus 240 ~~ 241 (635)
+.
T Consensus 89 GG 90 (178)
T 3iwt_A 89 GG 90 (178)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 257
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=45.69 E-value=61 Score=27.58 Aligned_cols=65 Identities=14% Similarity=0.197 Sum_probs=43.2
Q ss_pred EEEEEEEcCC--CCC-CcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc-CceEEEEecCC
Q 006683 169 RVAAIYEDNV--YGG-DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-QSRVFIVLQAS 241 (635)
Q Consensus 169 ~vaii~~~~~--~g~-~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~-~~~vii~~~~~ 241 (635)
++++|...|. .|. ...-...+.+.+++.| .++.....++.+. ..+.+.+++..+. ++|+||. .+.
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G-~~v~~~~iv~Dd~------~~i~~~l~~~~~~~~~DlVit-tGG 71 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGP-FEVAAYELVPDEP------PMIKKVLRLWADREGLDLILT-NGG 71 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSS-EEEEEEEEECSCH------HHHHHHHHHHHHTSCCSEEEE-ESC
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCC-CeEeEEEEcCCCH------HHHHHHHHHHHhcCCCCEEEE-cCC
Confidence 5666665443 110 0233567888899999 8888777666543 6777888777654 7899998 544
No 258
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=45.26 E-value=42 Score=32.36 Aligned_cols=83 Identities=12% Similarity=0.106 Sum_probs=51.5
Q ss_pred eEEEEEEEc---CCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhH
Q 006683 168 RRVAAIYED---NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDM 244 (635)
Q Consensus 168 ~~vaii~~~---~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~ 244 (635)
..|+++..+ ++|. ..+.+.+.+.+++.| ..+.......... .+ .......++.+.+.++|.||+ ......
T Consensus 44 ~~Igvi~~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~~~~~~--~~-~~~~~~~i~~l~~~~vdgiIi-~~~~~~ 116 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYW--VRNIASFEKRLYKLN-INYQLNQVFTRPN--AD-IKQQSLSLMEALKSKSDYLIF-TLDTTR 116 (342)
T ss_dssp EEEEEEECCCSSCCHH--HHHHHHHHHHHHHTT-CCEEEEEEECCTT--CC-HHHHHHHHHHHHHTTCSEEEE-CCSSST
T ss_pred eEEEEEecCCcccHHH--HHHHHHHHHHHHHcC-CeEEEEecCCCCc--cC-HHHHHHHHHHHHhcCCCEEEE-eCChHh
Confidence 478888865 3555 667788888999999 7665432111100 01 133456777777788999998 765543
Q ss_pred HHHHHHHHHHcCC
Q 006683 245 TIHLFTEANRMGL 257 (635)
Q Consensus 245 ~~~~l~~a~~~g~ 257 (635)
....++.+.+.+.
T Consensus 117 ~~~~~~~~~~~~i 129 (342)
T 1jx6_A 117 HRKFVEHVLDSTN 129 (342)
T ss_dssp THHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCC
Confidence 3445666666554
No 259
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=45.14 E-value=51 Score=31.05 Aligned_cols=80 Identities=6% Similarity=0.060 Sum_probs=50.7
Q ss_pred eEEEEEEEc--CCCCCCcchHHHHHHHHhccCCe-EEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhH
Q 006683 168 RRVAAIYED--NVYGGDSGKLALLAEALQNVSSS-EIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDM 244 (635)
Q Consensus 168 ~~vaii~~~--~~~g~~~~~~~~~~~~l~~~g~~-~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~ 244 (635)
++|+++..+ ++|. ..+.+.+.+.+++.| . .+.... ... + .......++.+...++|.||+.......
T Consensus 3 ~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~---~~~---~-~~~~~~~~~~~~~~~vdgiii~~~~~~~ 72 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFM--SVVRKAIEQDAKAAP-DVQLLMND---SQN---D-QSKQNDQIDVLLAKGVKALAINLVDPAA 72 (309)
T ss_dssp EEEEEEESCTTSHHH--HHHHHHHHHHHHTCT-TEEEEEEE---CTT---C-HHHHHHHHHHHHHTTCSEEEECCSSGGG
T ss_pred cEEEEEeccCCcHHH--HHHHHHHHHHHHhcC-CeEEEEec---CCC---C-HHHHHHHHHHHHHcCCCEEEEeCCCcch
Confidence 468888764 3355 667788889999999 6 654332 111 1 1334566777777889999882334443
Q ss_pred HHHHHHHHHHcCC
Q 006683 245 TIHLFTEANRMGL 257 (635)
Q Consensus 245 ~~~~l~~a~~~g~ 257 (635)
....++.+.+.++
T Consensus 73 ~~~~~~~~~~~~i 85 (309)
T 2fvy_A 73 AGTVIEKARGQNV 85 (309)
T ss_dssp HHHHHHHHHTTTC
T ss_pred hHHHHHHHHHCCC
Confidence 4566777776665
No 260
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=45.14 E-value=2.1e+02 Score=27.17 Aligned_cols=145 Identities=11% Similarity=0.060 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHhhcCCeEE--EEcCCCh-hhHHHHHHhhccC-CccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHH
Q 006683 81 DPFQAATAAQELINKEKVKV--IAGMETW-EETAVVAEIASRV-QVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMK 156 (635)
Q Consensus 81 ~~~~a~~~~~~li~~~~v~a--iiG~~~s-~~~~~v~~~~~~~-~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~ 156 (635)
.+..+.+.+.+++ +.++.+ ++.+..+ .....+...++.. ++.+|.+.+. .+-... ....-..|.
T Consensus 80 P~~~~~~~~~e~i-~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liGPnc~----Gii~p~-~~~~~~~~~------ 147 (305)
T 2fp4_A 80 PPPFAAAAINEAI-DAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCP----GVINPG-ECKIGIMPG------ 147 (305)
T ss_dssp CHHHHHHHHHHHH-HTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEECSSSC----EEEETT-TEEEESSCG------
T ss_pred CHHHHHHHHHHHH-HCCCCEEEEECCCCChHHHHHHHHHHHhcCCcEEEeCCCC----eEeccc-ccceeeccc------
Confidence 4556667777777 566655 3443332 2344788899999 9999877643 222211 111112221
Q ss_pred HHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc-CceEE
Q 006683 157 CIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-QSRVF 235 (635)
Q Consensus 157 al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~-~~~vi 235 (635)
....--+|++|..+... ...+...+.+.| +-+.....+-... ..| .++.+.++.+.+. +.++|
T Consensus 148 ------~~~~~G~va~vSqSG~l------~~~~~~~~~~~g-~G~S~~vs~G~~~-~~~--~~~~d~l~~~~~Dp~T~~I 211 (305)
T 2fp4_A 148 ------HIHKKGRIGIVSRSGTL------TYEAVHQTTQVG-LGQSLCVGIGGDP-FNG--TDFTDCLEIFLNDPATEGI 211 (305)
T ss_dssp ------GGCCEEEEEEEESCSHH------HHHHHHHHHHTT-CCEEEEEECCSSS-SCS--CCHHHHHHHHHHCTTCCEE
T ss_pred ------cCCCCCCEEEEecchHH------HHHHHHHHHhcC-CCeeEEeccCCCc-CCC--CCHHHHHHHHhcCCCCcEE
Confidence 12344689999877543 344555666777 5555544433321 012 4577888888765 88888
Q ss_pred EEecCCh-----hHHHHHHHHHHH
Q 006683 236 IVLQASL-----DMTIHLFTEANR 254 (635)
Q Consensus 236 i~~~~~~-----~~~~~~l~~a~~ 254 (635)
++ +... .+.+.|++++.+
T Consensus 212 ~l-~~E~~g~~e~~~~~f~~~~~~ 234 (305)
T 2fp4_A 212 IL-IGEIGGNAEENAAEFLKQHNS 234 (305)
T ss_dssp EE-EEESSSSHHHHHHHHHHHHSC
T ss_pred EE-EEecCCchhhHHHHHHHHHHH
Confidence 88 7664 568899987654
No 261
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=45.10 E-value=83 Score=30.28 Aligned_cols=118 Identities=8% Similarity=0.016 Sum_probs=69.1
Q ss_pred EEEEEeeCC--CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhc-CCeEEEEcCCChhhHHH
Q 006683 36 KIGAIVDAN--SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAV 112 (635)
Q Consensus 36 ~IG~i~p~s--~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~ 112 (635)
+||++.... ......-..|++.|+++.+-.. . ...+.....+...+.+.+.+++.. .++.+|+. .+...+..
T Consensus 187 ~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~---~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g 261 (344)
T 3kjx_A 187 RIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEI---E-DREFYSGGSALAKGREMTQAMLERSPDLDFLYY-SNDMIAAG 261 (344)
T ss_dssp SCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCC---S-CEEECSSCCCHHHHHHHHHHHHHHSTTCCEEEE-SSHHHHHH
T ss_pred eEEEEecCcccCccHHHHHHHHHHHHHHcCCCC---C-hheEEeCCCCHHHHHHHHHHHHhcCCCCCEEEE-CCHHHHHH
Confidence 566666543 2223455678888887765432 1 112334556777788888888854 47899996 34444555
Q ss_pred HHHhhccCC--cc----EEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH
Q 006683 113 VAEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA 162 (635)
Q Consensus 113 v~~~~~~~~--ip----~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l 162 (635)
+...+.+.+ +| ++++... .+.....|.+-.+..+...++...+++|
T Consensus 262 ~~~al~~~g~~vP~disvvg~D~~----~~~~~~~p~lttv~~~~~~~g~~av~~l 313 (344)
T 3kjx_A 262 GLLYLLEQGIDIPGQIGLAGFNNV----ELLQGLPRKLATMDACRLEIGRKAAEII 313 (344)
T ss_dssp HHHHHHHTTCCTTTTCEEECSBCC----GGGGGSSSCCBEEBCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCceEEEEECCh----HHHhccCCCccEEeCCHHHHHHHHHHHH
Confidence 555555543 33 6655433 3333233555566677777787777766
No 262
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=44.97 E-value=51 Score=31.72 Aligned_cols=85 Identities=8% Similarity=0.010 Sum_probs=53.4
Q ss_pred HHHCCCeEEEEEEEc----CCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEE
Q 006683 162 ARKYNWRRVAAIYED----NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIV 237 (635)
Q Consensus 162 l~~~~w~~vaii~~~----~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~ 237 (635)
|+.-.-+.|+++..+ ++|. ..+.+.+.+.+++.| ..+.... ... + .......++.+.+.+.|.||+
T Consensus 56 l~~~~~~~Igvi~~~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~--~~~----~-~~~~~~~~~~l~~~~vdgiIi 125 (338)
T 3dbi_A 56 LSAKSTQTLGLVVTNTLYHGIYF--SELLFHAARMAEEKG-RQLLLAD--GKH----S-AEEERQAIQYLLDLRCDAIMI 125 (338)
T ss_dssp ----CCSEEEEEECTTTTSTTHH--HHHHHHHHHHHHHTT-CEEEEEE--CTT----S-HHHHHHHHHHHHHTTCSEEEE
T ss_pred hhhCCCCEEEEEecCCcccChhH--HHHHHHHHHHHHHCC-CEEEEEe--CCC----C-hHHHHHHHHHHHhCCCCEEEE
Confidence 334445689999876 2455 667888999999999 7776443 111 1 133455778888889999998
Q ss_pred ecCChhHHHHHHHHHHHcCC
Q 006683 238 LQASLDMTIHLFTEANRMGL 257 (635)
Q Consensus 238 ~~~~~~~~~~~l~~a~~~g~ 257 (635)
.........+...+.+.++
T Consensus 126 -~~~~~~~~~~~~~~~~~~i 144 (338)
T 3dbi_A 126 -YPRFLSVDEIDDIIDAHSQ 144 (338)
T ss_dssp -CCSSSCHHHHHHHHHHCSS
T ss_pred -eCCCCChHHHHHHHHcCCC
Confidence 5544333445556666664
No 263
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=44.80 E-value=1.4e+02 Score=27.16 Aligned_cols=120 Identities=12% Similarity=0.041 Sum_probs=70.1
Q ss_pred EEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhc-CCeEEEEcCCChhhHHH
Q 006683 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAV 112 (635)
Q Consensus 35 i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~ 112 (635)
=+||++.... ......-..|++.++++.+-.. ...+ +.....+...+.+.+.+++.. ..+.+|+.. +...+..
T Consensus 121 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~---~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~g 195 (275)
T 3d8u_A 121 KNVGFIGARGNHSTLQRQLHGWQSAMIENYLTP---DHFL-TTHEAPSSQLGAEGLAKLLLRDSSLNALVCS-HEEIAIG 195 (275)
T ss_dssp CCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCC---CCEE-ECSSCCCHHHHHHHHHHHHTTCTTCCEEEES-SHHHHHH
T ss_pred CeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCC---CccE-EEeCCCChhHHHHHHHHHHhCCCCCCEEEEc-CcHHHHH
Confidence 4688877653 2234456678888888754321 1122 234455777788888888854 468899974 4444555
Q ss_pred HHHhhccCC--cc----EEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHH
Q 006683 113 VAEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (635)
Q Consensus 113 v~~~~~~~~--ip----~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~ 163 (635)
+...+...+ +| ++++... .......|.+-.+..+...++...+++|.
T Consensus 196 ~~~al~~~g~~vP~di~vvg~d~~----~~~~~~~p~lttv~~~~~~~g~~a~~~l~ 248 (275)
T 3d8u_A 196 ALFECHRRVLKVPTDIAIICLEGS----SMGEHAYPSLTSAEFDYERMGTKAAEKLL 248 (275)
T ss_dssp HHHHHHHTTCCTTTTCEEEESSCC----HHHHTSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCceEEEecCCc----hHhhhcCCCcceecCCHHHHHHHHHHHHH
Confidence 555555443 34 6665533 22222224455566777778887777763
No 264
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=44.38 E-value=41 Score=34.04 Aligned_cols=13 Identities=8% Similarity=0.115 Sum_probs=11.3
Q ss_pred CCeEEEEEEeeCC
Q 006683 32 EEVTKIGAIVDAN 44 (635)
Q Consensus 32 ~~~i~IG~i~p~s 44 (635)
.++++|..+.+.+
T Consensus 37 ~~~~~i~~iSD~H 49 (443)
T 2xmo_A 37 DRNLSMVVTTDVH 49 (443)
T ss_dssp CCCEEEEEECCCC
T ss_pred CCCeEEEEEeCCC
Confidence 4679999999988
No 265
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=44.13 E-value=53 Score=30.40 Aligned_cols=79 Identities=10% Similarity=0.015 Sum_probs=53.9
Q ss_pred CCeEEEEEEEcC--CCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChh
Q 006683 166 NWRRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLD 243 (635)
Q Consensus 166 ~w~~vaii~~~~--~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~ 243 (635)
+-+.|+++..+. +|. ..+.+.+.+.+++.| ..+..... ... .......++.+.+.++|.||+ .....
T Consensus 6 ~s~~Igvi~~~~~~~~~--~~~~~gi~~~~~~~g-~~~~~~~~--~~~-----~~~~~~~~~~l~~~~vdgiIi-~~~~~ 74 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFS--TELFKGISSILESRG-YIGVLFDA--NAD-----IEREKTLLRAIGSRGFDGLIL-QSFSN 74 (276)
T ss_dssp CCCEEEEEESCTTSHHH--HHHHHHHHHHHHTTT-CEEEEEEC--TTC-----HHHHHHHHHHHHTTTCSEEEE-ESSCC
T ss_pred CCcEEEEEeCCCCchHH--HHHHHHHHHHHHHCC-CEEEEEeC--CCC-----HHHHHHHHHHHHhCCCCEEEE-ecCCc
Confidence 346788888653 355 677888999999999 77765321 111 134456788888889999998 54443
Q ss_pred HHHHHHHHHHHcCC
Q 006683 244 MTIHLFTEANRMGL 257 (635)
Q Consensus 244 ~~~~~l~~a~~~g~ 257 (635)
...++.+.+.++
T Consensus 75 --~~~~~~l~~~~i 86 (276)
T 3jy6_A 75 --PQTVQEILHQQM 86 (276)
T ss_dssp --HHHHHHHHTTSS
T ss_pred --HHHHHHHHHCCC
Confidence 566777777665
No 266
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=43.83 E-value=2.2e+02 Score=27.06 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=74.9
Q ss_pred EEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCC---CCH-HHHHHHHHHHhhcCCeEEEEcCCChhhH
Q 006683 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHN---RDP-FQAATAAQELINKEKVKVIAGMETWEET 110 (635)
Q Consensus 35 i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~---~~~-~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (635)
-.|+.+|-..+ .....+|+.|+.++. |..+.+...++. +.+ ..+++.+..+. .++++=.+. .
T Consensus 37 k~la~lF~e~S---TRTR~SFe~A~~~LG----g~~i~l~~~~ss~~kgEsl~DTarvls~~~---D~iviR~~~----~ 102 (307)
T 3tpf_A 37 KTLAMIFEKNS---TRTRMAFELAITELG----GKALFLSSNDLQLSRGEPVKDTARVIGAMV---DFVMMRVNK----H 102 (307)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHTT----CEEEEECTTTCCTTTSSCHHHHHHHHHHHS---SEEEEECSC----H
T ss_pred CEEEEEecCCC---cchHHhHHHHHHHcC----CeEEEcCcccccCCCCCCHHHHHHHHHHhC---CEEEEecCC----h
Confidence 35788887664 466789999998875 345555443432 222 22333333332 233333332 2
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH---HHCC----CeEEEEEEEcCCCCCCc
Q 006683 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYN----WRRVAAIYEDNVYGGDS 183 (635)
Q Consensus 111 ~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l---~~~~----w~~vaii~~~~~~g~~~ 183 (635)
..+..+++..++|+|+.+.. ...| .+++++++ +++| ..+|+++.+ + .
T Consensus 103 ~~~~~lA~~~~vPVINag~~--------~~HP------------tQaLaDl~Ti~e~~g~l~~gl~va~vGD----~--~ 156 (307)
T 3tpf_A 103 ETLLEFARYSKAPVINALSE--------LYHP------------TQVLGDLFTIKEWNKMQNGIAKVAFIGD----S--N 156 (307)
T ss_dssp HHHHHHHHHCSSCEEEEECS--------SCCH------------HHHHHHHHHHHHTTCCGGGCCEEEEESC----S--S
T ss_pred HHHHHHHHhCCCCEEeCCCC--------CcCc------------HHHHHHHHHHHHHhCCCCCCCEEEEEcC----C--C
Confidence 34455667778999986522 1223 36777765 4554 447777753 3 4
Q ss_pred chHHHHHHHHhccCCeEEEEE
Q 006683 184 GKLALLAEALQNVSSSEIQSR 204 (635)
Q Consensus 184 ~~~~~~~~~l~~~g~~~v~~~ 204 (635)
..+..+...+...| .++...
T Consensus 157 ~va~Sl~~~~~~~G-~~v~~~ 176 (307)
T 3tpf_A 157 NMCNSWLITAAILG-FEISIA 176 (307)
T ss_dssp HHHHHHHHHHHHHT-CEEEEE
T ss_pred ccHHHHHHHHHHcC-CEEEEE
Confidence 56788888888889 776643
No 267
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=43.77 E-value=97 Score=22.97 Aligned_cols=95 Identities=15% Similarity=0.174 Sum_probs=53.9
Q ss_pred CceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHH
Q 006683 141 WPYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAV 220 (635)
Q Consensus 141 ~p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~ 220 (635)
+.+-.|+..+.+.+-..+-++++.|+.+-+.++.+|..|. +......+..| .++.... +..+. ..+
T Consensus 25 ngfkvrtvrspqelkdsieelvkkynativvvvvddkewa------ekairfvkslg-aqvliii-ydqdq------nrl 90 (134)
T 2l69_A 25 NGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWA------EKAIRFVKSLG-AQVLIII-YDQDQ------NRL 90 (134)
T ss_dssp TTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHH------HHHHHHHHHHC-CCCEEEE-ECSCH------HHH
T ss_pred cCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHH------HHHHHHHHhcC-CeEEEEE-EeCch------hHH
Confidence 3456788888888888888888888877777766555553 22222334444 3333222 33332 345
Q ss_pred HHHHHhhhhcCceEEEEecCChhHHHHHHHH
Q 006683 221 RGELKKVQDKQSRVFIVLQASLDMTIHLFTE 251 (635)
Q Consensus 221 ~~~l~~l~~~~~~vii~~~~~~~~~~~~l~~ 251 (635)
.+.-+.++..+-.+--+ .++++...-+..
T Consensus 91 eefsrevrrrgfevrtv--tspddfkksler 119 (134)
T 2l69_A 91 EEFSREVRRRGFEVRTV--TSPDDFKKSLER 119 (134)
T ss_dssp HHHHHHHHHTTCCEEEE--SSHHHHHHHHHH
T ss_pred HHHHHHHHhcCceEEEe--cChHHHHHHHHH
Confidence 55555566555555444 566665554444
No 268
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=43.54 E-value=2e+02 Score=26.58 Aligned_cols=120 Identities=11% Similarity=0.001 Sum_probs=71.5
Q ss_pred EEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhc-CCeEEEEcCCChhhHHH
Q 006683 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAV 112 (635)
Q Consensus 35 i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~ 112 (635)
=+||++.... ......-..|++.|+++.+-.... .+ +.....+...+.+.+.+++.. ..+.+|+.. +...+..
T Consensus 127 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~---~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-nd~~A~g 201 (294)
T 3qk7_A 127 QRIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLA---GY-LQKADPTRPGGYLAASRLLALEVPPTAIITD-CNMLGDG 201 (294)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCT---TC-EEEECSSHHHHHHHHHHHHHSSSCCSEEEES-SHHHHHH
T ss_pred ceEEEEeCCcccchHHHHHHHHHHHHHHCCCCCCh---hH-eecCCCCHHHHHHHHHHHHcCCCCCcEEEEC-CHHHHHH
Confidence 4677776654 223345567888888776433211 11 122345677788888888854 578899973 4445555
Q ss_pred HHHhhccCC------ccEEeecCCCCCCCCCCCCCceEEEEecCc-HHHHHHHHHHHH
Q 006683 113 VAEIASRVQ------VPILSFAAPAVTPLSMSRRWPYLIRMASND-SEQMKCIADLAR 163 (635)
Q Consensus 113 v~~~~~~~~------ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~-~~~~~al~~~l~ 163 (635)
+...+.+.+ |.++++... .+.....|-+-.+..+. ..++...+++|.
T Consensus 202 ~~~al~~~G~~vP~di~vig~D~~----~~~~~~~p~lttv~~~~~~~~g~~av~~L~ 255 (294)
T 3qk7_A 202 VASALDKAGLLGGEGISLIAYDGL----PDDSLLDIAVTPIVQNTRTSVGKQIASMIC 255 (294)
T ss_dssp HHHHHHHTTCSSTTSCEEEEETCS----CTTCSCCSCCEEEECCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCceEEEeecCc----cHHhhcCCCceeEecCcHHHHHHHHHHHHH
Confidence 555555544 336766544 23333335556667777 678887777763
No 269
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=43.34 E-value=1.5e+02 Score=27.12 Aligned_cols=116 Identities=11% Similarity=0.038 Sum_probs=67.4
Q ss_pred EEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhc--CCeEEEEcCCChhhHH
Q 006683 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK--EKVKVIAGMETWEETA 111 (635)
Q Consensus 35 i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~--~~v~aiiG~~~s~~~~ 111 (635)
=+||++.... ......-..|++.++++.+ .++. +.....+...+.+.+.+++.. .++.+|+. .+...+.
T Consensus 119 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g-----~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~ 190 (277)
T 3cs3_A 119 KKVLLLSGPEKGYDSQERLAVSTRELTRFG-----IPYE--IIQGDFTEPSGYAAAKKILSQPQTEPVDVFA-FNDEMAI 190 (277)
T ss_dssp SCEEEEECCTTSHHHHHHHHHHHHHHHHTT-----CCEE--EEECCSSHHHHHHHHHHHTTSCCCSSEEEEE-SSHHHHH
T ss_pred ceEEEEeCCccCccHHHHHHHHHHHHHHcC-----CCee--EEeCCCChhHHHHHHHHHHhcCCCCCcEEEE-cChHHHH
Confidence 3677776543 2233455678888887743 3344 334445677778888888854 47899997 3445555
Q ss_pred HHHHhhccCCc--c----EEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH
Q 006683 112 VVAEIASRVQV--P----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA 162 (635)
Q Consensus 112 ~v~~~~~~~~i--p----~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l 162 (635)
.+...+...++ | ++++... .+.....|.+-.+..+...++...+++|
T Consensus 191 g~~~al~~~g~~vP~di~vvg~d~~----~~~~~~~p~lttv~~~~~~~g~~a~~~l 243 (277)
T 3cs3_A 191 GVYKYVAETNYQMGKDIRIIGFDNS----ELGAFVQPRLATIAYSKHRWGMVAAEKI 243 (277)
T ss_dssp HHHHHHTTSSCCBTTTEEEECSSCC----HHHHHSSSCCBEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcEEEEEeCCc----HHHhccCCceeEEecCHHHHHHHHHHHH
Confidence 66666666543 3 4544332 1222112444455566667777666665
No 270
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=42.86 E-value=1e+02 Score=26.60 Aligned_cols=69 Identities=9% Similarity=-0.022 Sum_probs=45.3
Q ss_pred CCCeEEEEEEEcCC------C-CCC-cchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc-CceEE
Q 006683 165 YNWRRVAAIYEDNV------Y-GGD-SGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-QSRVF 235 (635)
Q Consensus 165 ~~w~~vaii~~~~~------~-g~~-~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~-~~~vi 235 (635)
+.--++++|...|. . |.- ..-...+.+.+++.| .++.....++.+. ..+.+.+++..+. ++|+|
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G-~~v~~~~iv~Dd~------~~I~~al~~a~~~~~~DlV 85 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENG-HKIIGYSLVPDDK------IKILKAFTDALSIDEVDVI 85 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTT-CEEEEEEEECSCH------HHHHHHHHHHHTCTTCCEE
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCC-CEEEEEEEeCCCH------HHHHHHHHHHHhcCCCCEE
Confidence 34457888887751 1 200 233556788889999 8888776666543 6677777776654 58999
Q ss_pred EEecCC
Q 006683 236 IVLQAS 241 (635)
Q Consensus 236 i~~~~~ 241 (635)
|. .+.
T Consensus 86 it-tGG 90 (178)
T 2pjk_A 86 IS-TGG 90 (178)
T ss_dssp EE-ESC
T ss_pred EE-CCC
Confidence 98 543
No 271
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=42.64 E-value=31 Score=33.50 Aligned_cols=88 Identities=11% Similarity=-0.059 Sum_probs=51.8
Q ss_pred cccceeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccEEEeccc-cccccccccccc---ccceeeeeEEEE
Q 006683 486 RYDGFSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLT-ILGNRTEYVEFT---QPYAESGFSMIV 561 (635)
Q Consensus 486 ~~~G~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~-~~~~r~~~~~fs---~p~~~~~~~~~v 561 (635)
.+.|+-+-.-+-+-++-|++++++.. . ++..++..|..|++|+++++.. ....|.+-.+.. .-+......+++
T Consensus 20 ~~ap~~vA~~kG~f~e~GLdVei~~~--~-~~~~~~~al~sG~~D~g~~~~~~~~~a~~~G~~v~~v~~~~~~~~~~~~~ 96 (342)
T 4esw_A 20 YHIPVYLANIKGYFKDENLDIAILEP--S-NPSDVTELVGSGKVDMGLKAMVGTLAAKARGFPVTSIGSLLDEPFTGICY 96 (342)
T ss_dssp GGHHHHHHHHTTHHHHTTCEEEEEEE--S-SGGGHHHHHHHTSSSEEEEEHHHHHHHHHTTCCEEEEEEEECSCCEEEEE
T ss_pred ChHHHHHHHHCCchHHcCCeEEEEeC--C-ChHHHHHHHHcCCcCEEEecHHHHHHHHHCCCCeEEEEEeccCCcccccc
Confidence 45566555555556677888655443 3 3788999999999999887543 333444443332 223334456666
Q ss_pred eCCCCC-CcceeecCC
Q 006683 562 PAKQEE-STWMFTKPF 576 (635)
Q Consensus 562 ~~~~~~-~~~~~l~pf 576 (635)
++++.. +....|+--
T Consensus 97 ~~~~~~~~~~~dLkGK 112 (342)
T 4esw_A 97 LEGSGITSDFQSLKGK 112 (342)
T ss_dssp ETTSSCCSSGGGGTTC
T ss_pred cccccccCCHHHhCCC
Confidence 665543 344444433
No 272
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=42.40 E-value=59 Score=28.39 Aligned_cols=66 Identities=12% Similarity=0.141 Sum_probs=45.0
Q ss_pred eEEEEEEEcCC--CCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCC
Q 006683 168 RRVAAIYEDNV--YGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQAS 241 (635)
Q Consensus 168 ~~vaii~~~~~--~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~ 241 (635)
-+++||...|. .|........+.+.+++.| .++.....++.+. ..+.+.+++..+.++|+||. .+.
T Consensus 31 ~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G-~~v~~~~iv~Dd~------~~I~~al~~a~~~~~DlVIt-tGG 98 (185)
T 3rfq_A 31 GRALVVVVDDRTAHGDEDHSGPLVTELLTEAG-FVVDGVVAVEADE------VDIRNALNTAVIGGVDLVVS-VGG 98 (185)
T ss_dssp EEEEEEEECHHHHTTCCCSHHHHHHHHHHHTT-EEEEEEEEECSCH------HHHHHHHHHHHHTTCSEEEE-ESC
T ss_pred CEEEEEEECcccCCCCcCcHHHHHHHHHHHCC-CEEEEEEEeCCCH------HHHHHHHHHHHhCCCCEEEE-CCC
Confidence 46788776543 1211344567888899999 8888877666543 66777777765457899998 443
No 273
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=41.86 E-value=56 Score=28.97 Aligned_cols=70 Identities=11% Similarity=0.189 Sum_probs=46.2
Q ss_pred ceeHHHHHHHHHHC-CCcccEEEecCCCChhhHHHHHHcCcccEEEecccccccccccccccccceeeeeEEEEeCCC
Q 006683 489 GFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQ 565 (635)
Q Consensus 489 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~ 565 (635)
.+-.+++..+.++. +.+ +.+.. ++...++..|.+|++|+++..... .....+. ..+.....+.++++++.
T Consensus 27 ~~l~~~l~~f~~~~P~v~--l~l~~--~~~~~~~~~l~~g~~Dl~i~~~~~--~~~~~l~-~~~l~~~~~~~v~~~~h 97 (228)
T 2fyi_A 27 YSLPEVIKAFRELFPEVR--LELIQ--GTPQEIATLLQNGEADIGIASERL--SNDPQLV-AFPWFRWHHSLLVPHDH 97 (228)
T ss_dssp HTHHHHHHHHHHHCTTEE--EEEEE--CCHHHHHHHHHHTSCSEEEESSSS--TTCTTEE-EEEEEEECEEEEEETTC
T ss_pred HHHHHHHHHHHHHCCCcE--EEEEe--CCHHHHHHHHHcCCccEEEEeccc--CCCCCce-EEEeeecceEEEecCCC
Confidence 34578888888876 444 44444 236789999999999999864221 1112222 24777888888888764
No 274
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=41.38 E-value=1.4e+02 Score=28.91 Aligned_cols=90 Identities=11% Similarity=0.089 Sum_probs=65.0
Q ss_pred EecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHh
Q 006683 147 MASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKK 226 (635)
Q Consensus 147 ~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~ 226 (635)
..|+....++.+.++++..+-++|.|-.+.+. ..+.+++.+...+ ++++. +.++. +++..
T Consensus 260 ClPSle~I~rqIk~~vk~~~lksVFIATDa~~------~~~ELk~~L~~~~-v~vv~---~~pe~----------a~ID~ 319 (362)
T 3zy2_A 260 CSPSKQQILEQIVEKVGSIGAKSVFVASDKDH------MIDEINEALKPYE-IEAHR---QEPDD----------MYTSL 319 (362)
T ss_dssp HSCCHHHHHHHHHHHHHHHTCSEEEEEESSCC------CHHHHHHHHGGGT-CCEEC---CSSCC----------HHHHH
T ss_pred cCCCHHHHHHHHHHHHHhcCCcEEEEecCCHH------HHHHHHHHhhccC-ceEEE---eCCch----------hHHHH
Confidence 35888999999999999889888888875443 3788888888777 76642 22222 34544
Q ss_pred hhhcCceEEEEecCChhHHHHHHHHHHHcCC
Q 006683 227 VQDKQSRVFIVLQASLDMTIHLFTEANRMGL 257 (635)
Q Consensus 227 l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~ 257 (635)
..-..++.+|- .+...-...+.++-.-.|+
T Consensus 320 ~I~~~A~~FIG-N~~SSFSa~I~rERdi~G~ 349 (362)
T 3zy2_A 320 AIMGRADLFVG-NCVSTFSHIVKRERDHAGQ 349 (362)
T ss_dssp HHHHHSSEEEE-CTTCHHHHHHHHHHHHSSS
T ss_pred HHHHhCCEeec-CccccccHHHHHHHHhcCC
Confidence 55557889888 7777777777777777774
No 275
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=41.23 E-value=50 Score=30.15 Aligned_cols=55 Identities=7% Similarity=0.040 Sum_probs=31.7
Q ss_pred CCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEE-EEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEE
Q 006683 165 YNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEI-QSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIV 237 (635)
Q Consensus 165 ~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v-~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~ 237 (635)
++.++|+++. | ......+.+.+...| ..- .....+ .+....++.+.+...|+++.
T Consensus 135 L~g~~v~v~~-----g--~~~~~~l~~~~~~~g-~~~~~~~~~~----------~~~~~~~~~l~~G~vDa~~~ 190 (259)
T 4dz1_A 135 LNKYSIGYPR-----G--MAYSDLIKNDLEPKG-YYSLSKVKLY----------PTYNETMADLKNGNLDLAFI 190 (259)
T ss_dssp GGGSCEEEET-----T--STHHHHHHHHTGGGT-SCCGGGCEEE----------SSHHHHHHHHHHTSCSEEEE
T ss_pred hCCCEEEEeC-----C--cHHHHHHHHhccccc-ccccceeEec----------CCHHHHHHHHHcCCCCEEEe
Confidence 3456888752 2 333555666666655 310 000011 12457888888889999888
No 276
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=40.82 E-value=1.1e+02 Score=28.34 Aligned_cols=122 Identities=11% Similarity=0.041 Sum_probs=71.0
Q ss_pred EEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhc-CCeEEEEcCCChhhHHH
Q 006683 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAV 112 (635)
Q Consensus 35 i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~ 112 (635)
=+||++.... ......-..|++.++++.+-.... .. +.....+...+.+.+.+++.. .++.+|+.. +...+..
T Consensus 128 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~g 202 (289)
T 3g85_A 128 KSAAAILTESLNDAMDNRNKGFIETCHKNGIKISE---NH-IIAAENSIHGGVDAAKKLMKLKNTPKALFCN-SDSIALG 202 (289)
T ss_dssp CBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCG---GG-EEECCSSHHHHHHHHHHHTTSSSCCSEEEES-SHHHHHH
T ss_pred CEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCCh---hh-eeccCCCHHHHHHHHHHHHcCCCCCcEEEEc-CCHHHHH
Confidence 3677776654 223345567888888775433211 11 123456777888888888854 468899974 4445555
Q ss_pred HHHhhccCC--cc----EEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHH
Q 006683 113 VAEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (635)
Q Consensus 113 v~~~~~~~~--ip----~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~ 163 (635)
+...+...+ +| ++++... +..+.....|.+-.+..+...++...+++|.
T Consensus 203 ~~~al~~~g~~vP~di~vig~d~~--~~~~~~~~~p~lttv~~~~~~~g~~a~~~l~ 257 (289)
T 3g85_A 203 VISVLNKRQISIPDDIEIVAIGMN--DREYTEFSTPPVTIVDIPIEEMAGTCISLVE 257 (289)
T ss_dssp HHHHHHHTTCCTTTTCEEEEEECS--CHHHHHSSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCceEEEEeCCC--CcchhhccCCCCeEEcCCHHHHHHHHHHHHH
Confidence 555555544 33 7776622 1222322234455666777778887777763
No 277
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=40.60 E-value=98 Score=26.40 Aligned_cols=68 Identities=12% Similarity=0.114 Sum_probs=46.2
Q ss_pred CCeEEEEEEEcCCCCCC-cchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhh-cCceEEEEecCC
Q 006683 166 NWRRVAAIYEDNVYGGD-SGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQSRVFIVLQAS 241 (635)
Q Consensus 166 ~w~~vaii~~~~~~g~~-~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~-~~~~vii~~~~~ 241 (635)
.--++++|...|.-|.- ..-...+.+.+++.| .++.....++.+. ..+.+.+++..+ .++|+||. .+.
T Consensus 12 ~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G-~~v~~~~iv~Dd~------~~i~~~l~~~~~~~~~DlVit-tGG 81 (169)
T 1y5e_A 12 KEVRCKIVTISDTRTEETDKSGQLLHELLKEAG-HKVTSYEIVKDDK------ESIQQAVLAGYHKEDVDVVLT-NGG 81 (169)
T ss_dssp CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHT-CEEEEEEEECSSH------HHHHHHHHHHHTCTTCSEEEE-ECC
T ss_pred cCCEEEEEEEcCccCeeccChHHHHHHHHHHCC-CeEeEEEEeCCCH------HHHHHHHHHHHhcCCCCEEEE-cCC
Confidence 34588888877654310 223456888888999 8888776666543 667777777765 37899998 544
No 278
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=40.41 E-value=71 Score=29.51 Aligned_cols=81 Identities=10% Similarity=0.001 Sum_probs=51.1
Q ss_pred eeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccEEEeccccc---c----cccccccccccceeeeeEEEEe
Q 006683 490 FSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTIL---G----NRTEYVEFTQPYAESGFSMIVP 562 (635)
Q Consensus 490 ~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~---~----~r~~~~~fs~p~~~~~~~~~v~ 562 (635)
+-.+|++.+-+.+|++++++ +. +-.-+...|.+|++|+.......+ + ...+......-+....++++||
T Consensus 16 i~~~i~~~~Le~~G~~Ve~~--~~--~~~~~~~al~~G~iD~~~e~w~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~Vp 91 (256)
T 3l6g_A 16 ASINVLTQAMKEHGFDVKTT--AL--DNAVAWQTVANGQADGMVSAWLPNTHKTQWQKYGKSVDLLGPNLKGAKVGFVVP 91 (256)
T ss_dssp HHHHHHHHHHHHTTEEEEEE--EC--CHHHHHHHHHTTSSSEEEEEEETTTTHHHHHHHGGGEEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEEE--EC--ChHHHHHHHHCCCCeEEEcccCCcccHHHHHHhCCceEEccccCCCceEEEEEC
Confidence 34678888888889886664 32 356688999999999976543322 1 1112223333334467999999
Q ss_pred CCCCCCcceeec
Q 006683 563 AKQEESTWMFTK 574 (635)
Q Consensus 563 ~~~~~~~~~~l~ 574 (635)
+......++.|+
T Consensus 92 ~~~~i~si~DL~ 103 (256)
T 3l6g_A 92 SYMNVNSIEDLT 103 (256)
T ss_dssp TTSCCCBGGGCS
T ss_pred CccCCCCHHHHH
Confidence 987555555553
No 279
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=39.68 E-value=1.6e+02 Score=26.82 Aligned_cols=94 Identities=6% Similarity=-0.050 Sum_probs=64.0
Q ss_pred HHHHHHHHHHCCCeEEEEEEEc------------CCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHH
Q 006683 155 MKCIADLARKYNWRRVAAIYED------------NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRG 222 (635)
Q Consensus 155 ~~al~~~l~~~~w~~vaii~~~------------~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~ 222 (635)
....++.++..|.+.|=+.... .... ....+.+++.+++.| +++......... ....+..
T Consensus 24 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~g-l~i~~~~~~~~~-----~~~~~~~ 95 (262)
T 3p6l_A 24 LTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLD--AQTQKEIKELAASKG-IKIVGTGVYVAE-----KSSDWEK 95 (262)
T ss_dssp HHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCC--HHHHHHHHHHHHHTT-CEEEEEEEECCS-----STTHHHH
T ss_pred HHHHHHHHHHcCCCEEeecCCcccccccccccccccCC--HHHHHHHHHHHHHcC-CeEEEEeccCCc-----cHHHHHH
Confidence 3556777788898888776432 1122 334788999999999 998765544321 1156888
Q ss_pred HHHhhhhcCceEEEEecCChhHHHHHHHHHHHcCC
Q 006683 223 ELKKVQDKQSRVFIVLQASLDMTIHLFTEANRMGL 257 (635)
Q Consensus 223 ~l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~g~ 257 (635)
.++..+.-+++.|++ ....+....+...|++.|+
T Consensus 96 ~i~~A~~lGa~~v~~-~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 96 MFKFAKAMDLEFITC-EPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp HHHHHHHTTCSEEEE-CCCGGGHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCEEEe-cCCHHHHHHHHHHHHHhCC
Confidence 888888889999998 7665666666666666554
No 280
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=39.52 E-value=11 Score=34.20 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=30.8
Q ss_pred HhhcCCeEEEEcCCChhhHHHHHHhhccCCccEEeec
Q 006683 92 LINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFA 128 (635)
Q Consensus 92 li~~~~v~aiiG~~~s~~~~~v~~~~~~~~ip~Is~~ 128 (635)
-+.+.+++.|+||..|.=......+++.+++++||.+
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstG 61 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSG 61 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHH
Confidence 3346789999999999877777888999999999764
No 281
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=39.38 E-value=80 Score=30.07 Aligned_cols=81 Identities=10% Similarity=0.076 Sum_probs=50.1
Q ss_pred CeEEEEEEEcC-CCCCCcchHHHHHHHHhcc-CCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhH
Q 006683 167 WRRVAAIYEDN-VYGGDSGKLALLAEALQNV-SSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDM 244 (635)
Q Consensus 167 w~~vaii~~~~-~~g~~~~~~~~~~~~l~~~-g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~ 244 (635)
-.+|+++..+. +|. ..+.+.+.+.+++. | ..+.... ... + .......++.+...++|.||+.......
T Consensus 6 ~~~Igvi~~~~~~~~--~~~~~gi~~~a~~~~g-~~l~i~~--~~~----~-~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 75 (325)
T 2x7x_A 6 HFRIGVAQCSDDSWR--HKMNDEILREAMFYNG-VSVEIRS--AGD----D-NSKQAEDVHYFMDEGVDLLIISANEAAP 75 (325)
T ss_dssp CCEEEEEESCCSHHH--HHHHHHHHHHHTTSSS-CEEEEEE--CTT----C-HHHHHHHHHHHHHTTCSEEEECCSSHHH
T ss_pred CeEEEEEecCCCHHH--HHHHHHHHHHHHHcCC-cEEEEeC--CCC----C-HHHHHHHHHHHHHcCCCEEEEeCCCHHH
Confidence 45788887652 243 45667788888888 8 7766432 111 1 1334566777777899999983333333
Q ss_pred HHHHHHHHHHcCC
Q 006683 245 TIHLFTEANRMGL 257 (635)
Q Consensus 245 ~~~~l~~a~~~g~ 257 (635)
....++.+.+.++
T Consensus 76 ~~~~~~~~~~~~i 88 (325)
T 2x7x_A 76 MTPIVEEAYQKGI 88 (325)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 3456677777665
No 282
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=38.89 E-value=1.2e+02 Score=29.28 Aligned_cols=121 Identities=10% Similarity=0.038 Sum_probs=72.0
Q ss_pred EEEEEEeeCCC-cC-cHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhc-CCeEEEEcCCChhhHH
Q 006683 35 TKIGAIVDANS-QM-GKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETA 111 (635)
Q Consensus 35 i~IG~i~p~s~-~~-g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~ 111 (635)
=+||++..... .. ...-..|++.|+++.+-.. .-.+.+.+...+...+.+.+.+++.. ..+.+|+.. +...+.
T Consensus 188 r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~-nD~~A~ 263 (355)
T 3e3m_A 188 RKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNP---DQEIRLGAPPLSIEDGVAAAELILQEYPDTDCIFCV-SDMPAF 263 (355)
T ss_dssp CSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCS---CCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEEEES-SHHHHH
T ss_pred CeEEEEccCcccChhHHHHHHHHHHHHHHCCcCC---CccEEEecCCCCHHHHHHHHHHHHcCCCCCcEEEEC-ChHHHH
Confidence 36787776542 22 3566788888888865432 11233444556677788888888854 578899973 444444
Q ss_pred HHHHhhccCC------ccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHH
Q 006683 112 VVAEIASRVQ------VPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (635)
Q Consensus 112 ~v~~~~~~~~------ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~ 163 (635)
.+...+...+ |.+|++... .+.....|.+-.+..+...++...+++|.
T Consensus 264 g~~~al~~~G~~vP~disvigfD~~----~~~~~~~p~lttv~~~~~~~g~~A~~~l~ 317 (355)
T 3e3m_A 264 GLLSRLKSIGVAVPEQVSVVGFGNF----EVSRFASPEISTVRVDPIAIGRETGSLIL 317 (355)
T ss_dssp HHHHHHHHHTCCTTTTCEEECSSCC----HHHHHSSSCCBEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCceEEEEECCh----HHHhccCCCceEEecCHHHHHHHHHHHHH
Confidence 5555554433 335655422 22322234455666777788888887763
No 283
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=38.84 E-value=88 Score=29.77 Aligned_cols=135 Identities=16% Similarity=0.120 Sum_probs=76.5
Q ss_pred EEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEE--cCCChhhHHH
Q 006683 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIA--GMETWEETAV 112 (635)
Q Consensus 35 i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aii--G~~~s~~~~~ 112 (635)
-.|+.+|-..+ .....+|+.|+.++. |..+.+...++.-.-.+.+.-..+.++.-++++|+ .+. ...
T Consensus 37 k~la~lF~e~S---TRTR~SFE~A~~~LG----g~~i~l~~~~ss~~kgEsl~DTarvLs~~~~D~iviR~~~-~~~--- 105 (304)
T 3r7f_A 37 KFAANLFFEPS---TRTRFSFEVAEKKLG----MNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSE-DEY--- 105 (304)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHTT----CEEEEEETTSTTSCSSSCHHHHHHHHHHHTCCEEEEECSS-TTC---
T ss_pred CEEEEEecCCC---hhHHHhHHHHHHHCC----CeEEEECcccccCCCCCCHHHHHHHHHHhcCCEEEEecCC-hhH---
Confidence 35888887764 366778999998875 44566654444322222233333344333344333 332 233
Q ss_pred HHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH---HHC---CCeEEEEEEEcCCCCCCcchH
Q 006683 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKY---NWRRVAAIYEDNVYGGDSGKL 186 (635)
Q Consensus 113 v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l---~~~---~w~~vaii~~~~~~g~~~~~~ 186 (635)
+..+++..++|+|+.+.+ +...| .+++++++ +++ ...+|+++.+- .+ ...+
T Consensus 106 ~~~la~~~~vPVINagdg-------~~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vGD~-~~---~rva 162 (304)
T 3r7f_A 106 YEELVSQVNIPILNAGDG-------CGQHP------------TQSLLDLMTIYEEFNTFKGLTVSIHGDI-KH---SRVA 162 (304)
T ss_dssp HHHHHHHCSSCEEESCCT-------TSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESCC-TT---CHHH
T ss_pred HHHHHHhCCCCEEeCCCC-------CCcCc------------HHHHHHHHHHHHHhCCCCCCEEEEEcCC-CC---cchH
Confidence 334456678999986532 11122 36677765 454 35678877532 12 2457
Q ss_pred HHHHHHHhccCCeEEEEE
Q 006683 187 ALLAEALQNVSSSEIQSR 204 (635)
Q Consensus 187 ~~~~~~l~~~g~~~v~~~ 204 (635)
..+...+...| .++...
T Consensus 163 ~Sl~~~~~~~G-~~v~~~ 179 (304)
T 3r7f_A 163 RSNAEVLTRLG-ARVLFS 179 (304)
T ss_dssp HHHHHHHHHTT-CEEEEE
T ss_pred HHHHHHHHHcC-CEEEEE
Confidence 77888888889 776654
No 284
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=38.72 E-value=72 Score=27.21 Aligned_cols=65 Identities=25% Similarity=0.306 Sum_probs=39.4
Q ss_pred EEEEEEEcCC--CCCC-cchHHHHHHH----HhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCC
Q 006683 169 RVAAIYEDNV--YGGD-SGKLALLAEA----LQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQAS 241 (635)
Q Consensus 169 ~vaii~~~~~--~g~~-~~~~~~~~~~----l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~ 241 (635)
++++|...|. .|.- ..-...+.+. +++.| .++.....++.+. ..+.+.+++..+.++|+||. .+.
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G-~~v~~~~iv~Dd~------~~I~~~l~~a~~~~~DlVit-tGG 78 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYS-YELISEVVVPEGY------DTVVEAIATALKQGARFIIT-AGG 78 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CE-EEEEEEEEECSSH------HHHHHHHHHHHHTTCSEEEE-ESC
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCC-CEEeEEEEeCCCH------HHHHHHHHHHHhCCCCEEEE-CCC
Confidence 6777765543 1100 2234567777 88889 8887776666543 66777887776556899998 544
No 285
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=38.66 E-value=50 Score=31.66 Aligned_cols=80 Identities=11% Similarity=0.034 Sum_probs=50.8
Q ss_pred eEEEEEEEc--CCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcC--ceEEEEecCChh
Q 006683 168 RRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQ--SRVFIVLQASLD 243 (635)
Q Consensus 168 ~~vaii~~~--~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~--~~vii~~~~~~~ 243 (635)
++|+++..+ ++|. ..+.+.+.+.+++.| ..+.... ... + .......++.+.+.+ +|.||+......
T Consensus 6 ~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g-~~l~~~~--~~~----~-~~~~~~~i~~l~~~~~~vdgiIi~~~~~~ 75 (332)
T 2rjo_A 6 TTLACSFRSLTNPYY--TAFNKGAQSFAKSVG-LPYVPLT--TEG----S-SEKGIADIRALLQKTGGNLVLNVDPNDSA 75 (332)
T ss_dssp CEEEEEESCTTSHHH--HHHHHHHHHHHHHHT-CCEEEEE--CTT----C-HHHHHHHHHHHHHHTTTCEEEEECCSSHH
T ss_pred cEEEEEecCCCcHHH--HHHHHHHHHHHHHcC-CEEEEec--CCC----C-HHHHHHHHHHHHHCCCCCCEEEEeCCCHH
Confidence 478888864 2344 567788888999999 7765432 111 1 133456677777778 999988333344
Q ss_pred HHHHHHHHHHHcCC
Q 006683 244 MTIHLFTEANRMGL 257 (635)
Q Consensus 244 ~~~~~l~~a~~~g~ 257 (635)
.....++.+.+.++
T Consensus 76 ~~~~~~~~~~~~~i 89 (332)
T 2rjo_A 76 DARVIVEACSKAGA 89 (332)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCC
Confidence 44456777776665
No 286
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=38.65 E-value=38 Score=27.91 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=26.1
Q ss_pred HHHhhhhhcccCCCCCCCcccccchhhHhHHHHhhccC-CCCCC
Q 006683 592 MFIVWLLEHQSNPEFRGTLKDQISNILWFAFSTIFFSH-SEYPL 634 (635)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~q~-~~~~~ 634 (635)
+.+++.+++..+ +....++.+++||++.++.--| |+..|
T Consensus 23 a~~~~~~e~~~~----~~~~~~~~~a~yf~~~T~tTvGyGd~~P 62 (139)
T 3eff_K 23 SYLAVLAERGAP----GAQLITYPRALWWSVETATTVGYGDLYP 62 (139)
T ss_dssp HHHHHHTTSSCT----TCCCCCHHHHHHHHHHHHTTCCCSSSCC
T ss_pred HHHHHHHhcCCC----CcccCCHHHHHHHHheeeecccCCCCcC
Confidence 445566666432 2333568999999999998888 45443
No 287
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=38.39 E-value=73 Score=29.61 Aligned_cols=84 Identities=10% Similarity=0.072 Sum_probs=49.6
Q ss_pred HHHCCCeEEEEEEEc----CCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEE
Q 006683 162 ARKYNWRRVAAIYED----NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIV 237 (635)
Q Consensus 162 l~~~~w~~vaii~~~----~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~ 237 (635)
|+.-.-.+|+++..+ ++|. ..+.+.+.+.+++.| ..+... .... + .......++.+.+.+.|.||+
T Consensus 14 L~~~~~~~Ig~i~~~~~~~~~~~--~~~~~gi~~~~~~~g-~~~~~~---~~~~---~-~~~~~~~~~~l~~~~vdgii~ 83 (296)
T 3brq_A 14 LSAKSTQTLGLVVTNTLYHGIYF--SELLFHAARMAEEKG-RQLLLA---DGKH---S-AEEERQAIQYLLDLRCDAIMI 83 (296)
T ss_dssp -----CCEEEEEECGGGCC--CH--HHHHHHHHHHHHHTT-CEEEEE---CCTT---S-HHHHHHHHHHHHHTTCSEEEE
T ss_pred hhcCCCceEEEEeCCcccCCchH--HHHHHHHHHHHHHCC-CEEEEE---eCCC---C-HHHHHHHHHHHHhcCCCEEEE
Confidence 333344689999865 3466 677888999999999 776543 1111 1 133456777887788999888
Q ss_pred ecCChhHHHHHHHHHHH-cCC
Q 006683 238 LQASLDMTIHLFTEANR-MGL 257 (635)
Q Consensus 238 ~~~~~~~~~~~l~~a~~-~g~ 257 (635)
....... ..++.+.+ .++
T Consensus 84 ~~~~~~~--~~~~~l~~~~~i 102 (296)
T 3brq_A 84 YPRFLSV--DEIDDIIDAHSQ 102 (296)
T ss_dssp ECSSSCH--HHHHHHHHTCSS
T ss_pred ecCCCCh--HHHHHHHhcCCC
Confidence 3332222 34555666 554
No 288
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=38.26 E-value=53 Score=30.56 Aligned_cols=80 Identities=11% Similarity=0.130 Sum_probs=49.5
Q ss_pred eEEEEEEEc--CCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHH
Q 006683 168 RRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (635)
Q Consensus 168 ~~vaii~~~--~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~ 245 (635)
+.|+++..+ ++|. ..+.+.+.+.+++.| ..+.... ... +. ..-...++.+.+.++|.||+........
T Consensus 2 ~~Igvi~~~~~~~f~--~~~~~gi~~~~~~~g-~~~~~~~--~~~----~~-~~~~~~i~~l~~~~vdgiIi~~~~~~~~ 71 (283)
T 2ioy_A 2 KTIGLVISTLNNPFF--VTLKNGAEEKAKELG-YKIIVED--SQN----DS-SKELSNVEDLIQQKVDVLLINPVDSDAV 71 (283)
T ss_dssp CEEEEEESCSSSHHH--HHHHHHHHHHHHHHT-CEEEEEE--CTT----CH-HHHHHHHHHHHHTTCSEEEECCSSTTTT
T ss_pred eEEEEEecCCCCHHH--HHHHHHHHHHHHhcC-cEEEEec--CCC----CH-HHHHHHHHHHHHcCCCEEEEeCCchhhh
Confidence 367787754 2344 567788888899999 7765432 111 11 2334567777778899988823333333
Q ss_pred HHHHHHHHHcCC
Q 006683 246 IHLFTEANRMGL 257 (635)
Q Consensus 246 ~~~l~~a~~~g~ 257 (635)
...++.+.+.|+
T Consensus 72 ~~~~~~~~~~~i 83 (283)
T 2ioy_A 72 VTAIKEANSKNI 83 (283)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 455667777665
No 289
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=37.71 E-value=38 Score=31.64 Aligned_cols=82 Identities=11% Similarity=0.060 Sum_probs=52.8
Q ss_pred HCCCeEEEEEEEc-------CCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEE
Q 006683 164 KYNWRRVAAIYED-------NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFI 236 (635)
Q Consensus 164 ~~~w~~vaii~~~-------~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii 236 (635)
.-+-++|+++..+ ++|. ..+.+.+.+.+++.| ..+... .... ........++.+.+.++|.||
T Consensus 5 ~~~~~~Igvi~~~~~~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~---~~~~----~~~~~~~~~~~~~~~~vdgiI 74 (292)
T 3k4h_A 5 NQTTKTLGLVMPSSASKAFQNPFF--PEVIRGISSFAHVEG-YALYMS---TGET----EEEIFNGVVKMVQGRQIGGII 74 (292)
T ss_dssp --CCCEEEEECSSCHHHHTTSTHH--HHHHHHHHHHHHHTT-CEEEEC---CCCS----HHHHHHHHHHHHHTTCCCEEE
T ss_pred cCCCCEEEEEecCCccccccCHHH--HHHHHHHHHHHHHcC-CEEEEE---eCCC----CHHHHHHHHHHHHcCCCCEEE
Confidence 3345678998876 3455 677888999999999 776542 1111 113445677778888999999
Q ss_pred EecCChhHHHHHHHHHHHcCC
Q 006683 237 VLQASLDMTIHLFTEANRMGL 257 (635)
Q Consensus 237 ~~~~~~~~~~~~l~~a~~~g~ 257 (635)
+ ...... ...++.+.+.++
T Consensus 75 i-~~~~~~-~~~~~~l~~~~i 93 (292)
T 3k4h_A 75 L-LYSREN-DRIIQYLHEQNF 93 (292)
T ss_dssp E-SCCBTT-CHHHHHHHHTTC
T ss_pred E-eCCCCC-hHHHHHHHHCCC
Confidence 8 543322 246667777776
No 290
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=37.70 E-value=73 Score=30.04 Aligned_cols=69 Identities=16% Similarity=0.156 Sum_probs=45.8
Q ss_pred ceeHHHHHHHHHHC-CCcccEEEecCCCChhhHHHHHHcCcccEEEecccccccccccccccccceeeeeEEEEeCCC
Q 006683 489 GFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQ 565 (635)
Q Consensus 489 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~ 565 (635)
.+-.+++..+.++. +.+ +.+.. ++...++..|.+|++|+++....... ..+. +.+.....++++++++.
T Consensus 103 ~~l~~~l~~f~~~~P~v~--i~l~~--~~~~~~~~~l~~g~~Dlai~~~~~~~---~~l~-~~~L~~~~~~~v~~~~h 172 (312)
T 2h9b_A 103 GLLPRIIHLYRQAHPNLR--IELYE--MGTKAQTEALKEGRIDAGFGRLKISD---PAIK-HSLLRNERLMVAVHASH 172 (312)
T ss_dssp TTHHHHHHHHHHTCTTCE--EEEEE--CCHHHHHHHHHTTSCSEEEESSCCCC---TTEE-EEEEEEEEEEEEEETTS
T ss_pred hhHHHHHHHHHHHCCCcE--EEEEe--CCHHHHHHHHHcCCCCEEEEeCCCCC---CCce-EEEeecceEEEEEcCCC
Confidence 34568888888776 555 44443 23678999999999999987443221 2222 34777888888887653
No 291
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=37.53 E-value=71 Score=28.99 Aligned_cols=114 Identities=11% Similarity=-0.021 Sum_probs=67.3
Q ss_pred EEEEEeeC--CCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHHHH
Q 006683 36 KIGAIVDA--NSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (635)
Q Consensus 36 ~IG~i~p~--s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v 113 (635)
+||++... +......-..|++.|+++.+-. ++. .....+...+.+.+.+++ +.++.+|+.. +...+..+
T Consensus 117 ~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~-----~~~--~~~~~~~~~~~~~~~~~l-~~~~~ai~~~-~d~~A~g~ 187 (255)
T 1byk_A 117 NISYLGVPHSDVTTGKRRHEAYLAFCKAHKLH-----PVA--ALPGLAMKQGYENVAKVI-TPETTALLCA-TDTLALGA 187 (255)
T ss_dssp CEEEECCCTTSTTTTHHHHHHHHHHHHHTTCC-----CEE--ECCCSCHHHHHHHSGGGC-CTTCCEEEES-SHHHHHHH
T ss_pred eEEEEecCCCCcccHHHHHHHHHHHHHHcCCC-----cce--eecCCccchHHHHHHHHh-cCCCCEEEEe-ChHHHHHH
Confidence 67877643 2233456678888888875422 222 233456777777788888 4678899974 34445555
Q ss_pred HHhhccC---CccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH
Q 006683 114 AEIASRV---QVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA 162 (635)
Q Consensus 114 ~~~~~~~---~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l 162 (635)
...+... ++.++++... .+.....|.+-.+..+...++...+++|
T Consensus 188 ~~al~~~g~~di~vig~d~~----~~~~~~~p~lttv~~~~~~~g~~a~~~l 235 (255)
T 1byk_A 188 SKYLQEQRIDTLQLASVGNT----PLMKFLHPEIVTVDPGYAEAGRQAACQL 235 (255)
T ss_dssp HHHHHHTTCCSCEEEEECCC----HHHHHHCTTSEEEBCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcEEEEEeCCc----hhhhccCCCcceEecCHHHHHHHHHHHH
Confidence 5555444 5677776544 2222112444455566677777777765
No 292
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=37.49 E-value=56 Score=30.12 Aligned_cols=80 Identities=6% Similarity=0.057 Sum_probs=49.8
Q ss_pred eEEEEEEEc--CCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHH
Q 006683 168 RRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (635)
Q Consensus 168 ~~vaii~~~--~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~ 245 (635)
+.|+++..+ ++|. ..+.+.+.+.+++.| ..+.... ... + ...-...++.+...++|.||+........
T Consensus 2 ~~Igvi~~~~~~~f~--~~~~~gi~~~~~~~g-~~~~~~~--~~~----~-~~~~~~~i~~l~~~~vdgiIi~~~~~~~~ 71 (271)
T 2dri_A 2 DTIALVVSTLNNPFF--VSLKDGAQKEADKLG-YNLVVLD--SQN----N-PAKELANVQDLTVRGTKILLINPTDSDAV 71 (271)
T ss_dssp CEEEEEESCSSSHHH--HHHHHHHHHHHHHHT-CEEEEEE--CTT----C-HHHHHHHHHHHTTTTEEEEEECCSSTTTT
T ss_pred cEEEEEecCCCCHHH--HHHHHHHHHHHHHcC-cEEEEeC--CCC----C-HHHHHHHHHHHHHcCCCEEEEeCCChHHH
Confidence 467888764 3354 567788888999999 7766432 111 1 12334567777778899998823333333
Q ss_pred HHHHHHHHHcCC
Q 006683 246 IHLFTEANRMGL 257 (635)
Q Consensus 246 ~~~l~~a~~~g~ 257 (635)
...++.+.+.++
T Consensus 72 ~~~~~~~~~~~i 83 (271)
T 2dri_A 72 GNAVKMANQANI 83 (271)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHCCC
Confidence 345667777665
No 293
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=37.25 E-value=65 Score=30.35 Aligned_cols=86 Identities=10% Similarity=0.066 Sum_probs=50.8
Q ss_pred HHHHHCCCeEEEEEEEcC--CCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEE
Q 006683 160 DLARKYNWRRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIV 237 (635)
Q Consensus 160 ~~l~~~~w~~vaii~~~~--~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~ 237 (635)
.-|+.-+-+.|+++..+. +|. ..+.+.+.+.+++.| ..+..... ..+. ......++.+.+.+.|.||+
T Consensus 8 r~L~~~~s~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~-~~~~------~~~~~~~~~l~~~~vdgiI~ 77 (303)
T 3kke_A 8 RALRHSRSGTIGLIVPDVNNAVF--ADMFSGVQMAASGHS-TDVLLGQI-DAPP------RGTQQLSRLVSEGRVDGVLL 77 (303)
T ss_dssp ---------CEEEEESCTTSTTH--HHHHHHHHHHHHHTT-CCEEEEEC-CSTT------HHHHHHHHHHHSCSSSEEEE
T ss_pred HHHhhCCCCEEEEEeCCCcChHH--HHHHHHHHHHHHHCC-CEEEEEeC-CCCh------HHHHHHHHHHHhCCCcEEEE
Confidence 334444456789988653 455 677888999999999 77764321 1111 34567788888889999998
Q ss_pred ecCChhHHHHHHHHHHHcCC
Q 006683 238 LQASLDMTIHLFTEANRMGL 257 (635)
Q Consensus 238 ~~~~~~~~~~~l~~a~~~g~ 257 (635)
..........+..+.+ ++
T Consensus 78 -~~~~~~~~~~~~~l~~-~i 95 (303)
T 3kke_A 78 -QRREDFDDDMLAAVLE-GV 95 (303)
T ss_dssp -CCCTTCCHHHHHHHHT-TS
T ss_pred -ecCCCCcHHHHHHHhC-CC
Confidence 5433222215556666 55
No 294
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=37.04 E-value=69 Score=30.12 Aligned_cols=71 Identities=14% Similarity=0.074 Sum_probs=47.2
Q ss_pred eHHHHHHHHHH-CCCcccEEEecCCCChhhHHHHHHc-Cc-ccEEEecccccc---cccccccccccceeeeeEEEEeCC
Q 006683 491 SIELFRLVVDH-LNYDLPYEFVPHDGVYDDLINGVYD-KT-YDAAVGDLTILG---NRTEYVEFTQPYAESGFSMIVPAK 564 (635)
Q Consensus 491 ~~dl~~~la~~-l~~~~~~~~~~~~~~~~~~~~~l~~-g~-~D~~~~~~~~~~---~r~~~~~fs~p~~~~~~~~~v~~~ 564 (635)
.-++++.+.++ -|.++++.... ...++..+.+ |. +|+.++.-.... .+...++...||....++++++++
T Consensus 19 ~~~l~~~F~~~~~gi~V~~~~~~----s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvl~~~~~ 94 (295)
T 3cij_A 19 MKAFKRAFEEKHPNVEVQTEAAG----SAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMFAKNQIVLAYRND 94 (295)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEEC----HHHHHHHHHTSCCCCSEEEESSTHHHHHHHTTTTCCCCEEEEECCEEEEECTT
T ss_pred HHHHHHHHHHHCCCceEEEEeCc----HHHHHHHHHhCCCCCCEEEEcChhhHHHHHhCCCcceeeEEEeeeEEEEEeCC
Confidence 34777888787 49886665433 5668888888 74 999886432211 122333445688888999999876
Q ss_pred C
Q 006683 565 Q 565 (635)
Q Consensus 565 ~ 565 (635)
.
T Consensus 95 ~ 95 (295)
T 3cij_A 95 S 95 (295)
T ss_dssp S
T ss_pred C
Confidence 4
No 295
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=36.82 E-value=68 Score=30.17 Aligned_cols=72 Identities=14% Similarity=0.070 Sum_probs=46.9
Q ss_pred eeHHHHHHHHHH-CCCcccEEEecCCCChhhHHHHHHc-Cc-ccEEEecccccccc---cccccccccceeeeeEEEEeC
Q 006683 490 FSIELFRLVVDH-LNYDLPYEFVPHDGVYDDLINGVYD-KT-YDAAVGDLTILGNR---TEYVEFTQPYAESGFSMIVPA 563 (635)
Q Consensus 490 ~~~dl~~~la~~-l~~~~~~~~~~~~~~~~~~~~~l~~-g~-~D~~~~~~~~~~~r---~~~~~fs~p~~~~~~~~~v~~ 563 (635)
..-++++.+.++ -|.++++.... -..++..+.+ |. +|+.++.-....++ ...++...||....+++++++
T Consensus 18 ~~~~l~~~F~~~~~gi~V~~~~~~----s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvi~~~~ 93 (292)
T 3cfz_A 18 PFEEYEKMFEKEHPNVDVEREPAG----SVACVRKIIDLGKKADILASADYSLIPQMMMPKYADWYVMFARNEIVLAYTD 93 (292)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEEC----HHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECCEEEEECT
T ss_pred HHHHHHHHHHHHCCCceEEEEeCC----HHHHHHHHHhcCCCCcEEEECChHHHHHHHhCCCccceeeeEeccEEEEEcC
Confidence 345788888777 58886554332 5668888888 75 99987643221222 223344567888899999987
Q ss_pred CC
Q 006683 564 KQ 565 (635)
Q Consensus 564 ~~ 565 (635)
+.
T Consensus 94 ~~ 95 (292)
T 3cfz_A 94 KS 95 (292)
T ss_dssp TS
T ss_pred CC
Confidence 64
No 296
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=36.37 E-value=74 Score=29.97 Aligned_cols=71 Identities=13% Similarity=0.055 Sum_probs=46.8
Q ss_pred eHHHHHHHHHH-CCCcccEEEecCCCChhhHHHHHHc-Cc-ccEEEecccccc---cccccccccccceeeeeEEEEeCC
Q 006683 491 SIELFRLVVDH-LNYDLPYEFVPHDGVYDDLINGVYD-KT-YDAAVGDLTILG---NRTEYVEFTQPYAESGFSMIVPAK 564 (635)
Q Consensus 491 ~~dl~~~la~~-l~~~~~~~~~~~~~~~~~~~~~l~~-g~-~D~~~~~~~~~~---~r~~~~~fs~p~~~~~~~~~v~~~ 564 (635)
.-++++.+.++ -|.++++... +-..++..+.+ |. +|+.++.-.... .....++...||....++++++++
T Consensus 19 ~~~l~~~F~~~~~gi~V~~~~~----~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~l~i~~~~~ 94 (296)
T 3cfx_A 19 FEELEAEFEAQHPGVDVQREAA----GSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILAYTNE 94 (296)
T ss_dssp HHHHHHHHHHHSTTCEEEEEEC----CHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEEECTT
T ss_pred HHHHHHHHHHHCCCceEEEEeC----chHHHHHHHHhCCCCCcEEEECChhhHHHHHhCCCccceeeeEeeeEEEEEeCC
Confidence 34788888887 5888665432 35678888888 64 999876432211 222333455678888999999876
Q ss_pred C
Q 006683 565 Q 565 (635)
Q Consensus 565 ~ 565 (635)
.
T Consensus 95 ~ 95 (296)
T 3cfx_A 95 S 95 (296)
T ss_dssp S
T ss_pred C
Confidence 4
No 297
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=35.88 E-value=2e+02 Score=26.36 Aligned_cols=116 Identities=13% Similarity=0.032 Sum_probs=64.8
Q ss_pred EEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHH--Hhhc-CCeEEEEcCCChhhH
Q 006683 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQE--LINK-EKVKVIAGMETWEET 110 (635)
Q Consensus 35 i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~--li~~-~~v~aiiG~~~s~~~ 110 (635)
=+||++.... ......-..|++.++++.+-. +.+. ....+...+.+.+.+ ++.. .++.+|+.. +...+
T Consensus 125 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~-----~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~A 196 (285)
T 3c3k_A 125 KRIALINHDLAYQYAQHRESGYLNRLKFHGLD-----YSRI--SYAENLDYMAGKLATFSLLKSAVKPDAIFAI-SDVLA 196 (285)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHHHHHHTCC-----CCEE--EECSSSSHHHHHHHHHHHHSSSSCCSEEEES-SHHHH
T ss_pred CeEEEEeCCCccccHHHHHHHHHHHHHHcCCC-----ceEe--ecCCChHHHHHHHHHHHHHcCCCCCeEEEEC-CHHHH
Confidence 4678777653 223445567888888886532 2221 222344456667777 7743 368899974 34445
Q ss_pred HHHHHhhccCC--cc----EEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH
Q 006683 111 AVVAEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA 162 (635)
Q Consensus 111 ~~v~~~~~~~~--ip----~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l 162 (635)
..+...+...+ +| ++++... .+.....|.+-.+..+...++...+++|
T Consensus 197 ~g~~~al~~~g~~vP~di~vvg~d~~----~~~~~~~p~lttv~~~~~~~g~~a~~~l 250 (285)
T 3c3k_A 197 AGAIQALTESGLSIPQDVAVVGFDGV----DISQITVPALTTVQQPSEQIGMKAVSLL 250 (285)
T ss_dssp HHHHHHHHHTTCCTTTTCEEECSBCC----GGGGTSSSCCBEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCceEEEEeCCh----HHHhhcCCCceEEeCCHHHHHHHHHHHH
Confidence 55555554443 34 6766544 2222222444455566667777777765
No 298
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=35.39 E-value=61 Score=32.98 Aligned_cols=82 Identities=11% Similarity=0.070 Sum_probs=53.6
Q ss_pred HHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEE
Q 006683 157 CIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFI 236 (635)
Q Consensus 157 al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii 236 (635)
.+.++++.+|.+++.+|++.... ....+.+.+.+++.| +.+.+. .+.... ..+......+.+++ ++|+||
T Consensus 81 ~l~~~l~~~g~~rvlIVtd~~~~---~~~~~~v~~~L~~~g-i~~~~~-~~~ge~----~~~~v~~~~~~~~~-~~D~II 150 (450)
T 1ta9_A 81 RSYMYVKKWATKSAVVLADQNVW---NICANKIVDSLSQNG-MTVTKL-VFGGEA----SLVELDKLRKQCPD-DTQVII 150 (450)
T ss_dssp GHHHHHTTTCSSEEEEEEEHHHH---HHTHHHHHHHHHHTT-CEEEEE-EECSCC----CHHHHHHHHTTSCT-TCCEEE
T ss_pred HHHHHHHhcCCCEEEEEECccHH---HHHHHHHHHHHHHCC-CeEEEE-eeCCCC----CHHHHHHHHHHHhh-CCCEEE
Confidence 35667777786699999877543 335778888888888 877532 243322 22467777777777 999999
Q ss_pred EecCCh--hHHHHHH
Q 006683 237 VLQASL--DMTIHLF 249 (635)
Q Consensus 237 ~~~~~~--~~~~~~l 249 (635)
. .+.+ -++..++
T Consensus 151 A-vGGGSviD~AK~i 164 (450)
T 1ta9_A 151 G-VGGGKTMDSAKYI 164 (450)
T ss_dssp E-EESHHHHHHHHHH
T ss_pred E-eCCcHHHHHHHHH
Confidence 7 4443 3444444
No 299
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=35.06 E-value=1.1e+02 Score=28.27 Aligned_cols=119 Identities=12% Similarity=0.050 Sum_probs=70.9
Q ss_pred eEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEE-EecCCCCHHHHHHHHHHHhhc-CCeEEEEcCCChhhH
Q 006683 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQ-IRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEET 110 (635)
Q Consensus 34 ~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~-~~D~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~ 110 (635)
.=+||++.... ......-..|++.++++.+- ++... +.....+...+.+.+.+++.. ..+.+|+.. +...+
T Consensus 127 ~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~A 200 (288)
T 3gv0_A 127 RKRIAVIVPPSRFSFHDHARKGFNRGIRDFGL-----TEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDGIVSI-SGSST 200 (288)
T ss_dssp CCEEEEECCCTTSHHHHHHHHHHHHHHHHTTC-----EECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEEES-CHHHH
T ss_pred CCeEEEEcCCcccchHHHHHHHHHHHHHHcCC-----CcchhheeccccchHHHHHHHHHHHhCCCCCcEEEEc-CcHHH
Confidence 34778776543 22334556778777776532 22221 234456777788888888854 468899964 44455
Q ss_pred HHHHHhhccCC------ccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH
Q 006683 111 AVVAEIASRVQ------VPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA 162 (635)
Q Consensus 111 ~~v~~~~~~~~------ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l 162 (635)
..+...+...+ +.++++... .+.....|.+-.+..+...+++..+++|
T Consensus 201 ~g~~~al~~~g~~vP~di~vig~d~~----~~~~~~~p~lttv~~~~~~~g~~a~~~l 254 (288)
T 3gv0_A 201 IALVAGFEAAGVKIGEDVDIVSKQSA----EFLNWIKPQIHTVNEDIKLAGRELAKAL 254 (288)
T ss_dssp HHHHHHHHTTTCCTTTSCEEEEEESS----TTHHHHCTTSEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCceEEEEecCh----HHHhccCCCceEEecCHHHHHHHHHHHH
Confidence 55666666554 346766544 2333222444556677777888777776
No 300
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=34.93 E-value=75 Score=28.58 Aligned_cols=70 Identities=13% Similarity=0.221 Sum_probs=42.3
Q ss_pred HHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccEEEeccccccccc-ccc-cccccceeeeeEEEEeCCC
Q 006683 493 ELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRT-EYV-EFTQPYAESGFSMIVPAKQ 565 (635)
Q Consensus 493 dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~-~~~-~fs~p~~~~~~~~~v~~~~ 565 (635)
+.++.+.+..|++++++... +...++.+|.+|++|.++.......... +.- -...++....+.++++++.
T Consensus 161 ~~~~~~~~~~g~~~~~~~~~---~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 232 (259)
T 2v25_A 161 KAIGEAAKKIGIDVKFSEFP---DYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILPDSFEPQSYGIVTKKDD 232 (259)
T ss_dssp HHHHHHHHHTTCCCEEEEES---SHHHHHHHHHTTSSSEEEEEHHHHTTTCCTTEEECSCCCSEEEECCEEETTC
T ss_pred HHHHHHHHhcCCceeEEEeC---CHHHHHHHHHcCCCcEEEecHHHHHHHHHhCCCccccccccceeEEEEcCCC
Confidence 45566667778875554433 4788999999999999887544321111 110 1223455556666776653
No 301
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=34.90 E-value=94 Score=29.97 Aligned_cols=94 Identities=11% Similarity=0.050 Sum_probs=48.5
Q ss_pred EEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHH
Q 006683 144 LIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGE 223 (635)
Q Consensus 144 ~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~ 223 (635)
+|.+.++.+.....|.. .+++.+|+....-. ....+.+.+.+++.| +.+.....-. . .+....
T Consensus 12 ~~~~~~~~~~~~~~m~~------~~~~~vi~Np~sg~--~~~~~~i~~~l~~~g-~~~~~~~t~~--~------~~~~~~ 74 (332)
T 2bon_A 12 LYKKAGSETLYIQGMAE------FPASLLILNGKSTD--NLPLREAIMLLREEG-MTIHVRVTWE--K------GDAARY 74 (332)
T ss_dssp ------------------------CCEEEEECSSSTT--CHHHHHHHHHHHTTT-CCEEEEECCS--T------THHHHH
T ss_pred eeeeccCcchhhhhhhh------cceEEEEECCCCCC--CchHHHHHHHHHHcC-CcEEEEEecC--c------chHHHH
Confidence 44455554444444432 26788888655422 234566788888888 7765443211 1 234445
Q ss_pred HHhhhhcCceEEEEecCChhHHHHHHHHHHHc
Q 006683 224 LKKVQDKQSRVFIVLQASLDMTIHLFTEANRM 255 (635)
Q Consensus 224 l~~l~~~~~~vii~~~~~~~~~~~~l~~a~~~ 255 (635)
.++....++|.||+ .+.-.....+++.+.+.
T Consensus 75 ~~~~~~~~~d~vvv-~GGDGTl~~v~~~l~~~ 105 (332)
T 2bon_A 75 VEEARKFGVATVIA-GGGDGTINEVSTALIQC 105 (332)
T ss_dssp HHHHHHHTCSEEEE-EESHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCEEEE-EccchHHHHHHHHHhhc
Confidence 55555557888888 77777888888887753
No 302
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=34.89 E-value=1.7e+02 Score=27.71 Aligned_cols=118 Identities=15% Similarity=0.076 Sum_probs=68.5
Q ss_pred EEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHHHH
Q 006683 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (635)
Q Consensus 35 i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v 113 (635)
=+||++.... ......-..|++.|+++.+-.... .+ +.....+...+.+.+.+++.. ++.+|+.. +...+..+
T Consensus 181 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~---~~-~~~~~~~~~~~~~~~~~ll~~-~~~ai~~~-~d~~A~g~ 254 (332)
T 2o20_A 181 KKIAYIMGSLKDVENTERMVGYQEALLEANIEFDE---NL-VFEGNYSYEQGKALAERLLER-GATSAVVS-HDTVAVGL 254 (332)
T ss_dssp SSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCG---GG-EECSCCSHHHHHHHHHHHHHT-TCCEEEES-CHHHHHHH
T ss_pred CeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCCh---hh-EEeCCCCHHHHHHHHHHHhcc-CCCEEEEC-ChHHHHHH
Confidence 3677776543 223345567888888775432110 11 223345677778888888855 88999974 44455555
Q ss_pred HHhhccCCc--c----EEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH
Q 006683 114 AEIASRVQV--P----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA 162 (635)
Q Consensus 114 ~~~~~~~~i--p----~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l 162 (635)
...+.+.++ | ++++... .+.....|.+-.+..+...++...+++|
T Consensus 255 ~~al~~~G~~vP~disvig~D~~----~~~~~~~p~lttv~~~~~~~g~~a~~~l 305 (332)
T 2o20_A 255 LSAMMDKGVKVPEDFEIISGANS----PITQYTYPTLTSVNQPLYDLGAVAMRLL 305 (332)
T ss_dssp HHHHHHTTCCTTTTCEEEESSCC----GGGGSBSSCCEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCccCEEEEEeCCh----HHHhhCCCceEEEeeCHHHHHHHHHHHH
Confidence 555555443 4 6665533 2222223555566667777777777765
No 303
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=34.81 E-value=55 Score=30.25 Aligned_cols=78 Identities=8% Similarity=-0.011 Sum_probs=49.7
Q ss_pred CCeEEEEEEEc--CCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChh
Q 006683 166 NWRRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLD 243 (635)
Q Consensus 166 ~w~~vaii~~~--~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~ 243 (635)
+-+.|+++..+ ++|. ..+.+.+.+.+++.| ..+..... ... .......++.+.+.++|.||+ ....
T Consensus 7 ~~~~Ig~i~~~~~~~~~--~~~~~gi~~~~~~~g-~~~~~~~~--~~~-----~~~~~~~~~~l~~~~~dgiIi-~~~~- 74 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFF--TLIARGVEDVALAHG-YQVLIGNS--DND-----IKKAQGYLATFVSHNCTGMIS-TAFN- 74 (277)
T ss_dssp ---CEEEEESCTTSHHH--HHHHHHHHHHHHHTT-CCEEEEEC--TTC-----HHHHHHHHHHHHHTTCSEEEE-CGGG-
T ss_pred CCCEEEEEECCCCCHHH--HHHHHHHHHHHHHCC-CEEEEEeC--CCC-----HHHHHHHHHHHHhCCCCEEEE-ecCC-
Confidence 34578888875 3355 677888999999999 77764321 111 134567788888889999999 5522
Q ss_pred HHHHHHH-HHHHcCC
Q 006683 244 MTIHLFT-EANRMGL 257 (635)
Q Consensus 244 ~~~~~l~-~a~~~g~ 257 (635)
...++ .+.+.|+
T Consensus 75 --~~~~~~~l~~~~i 87 (277)
T 3e61_A 75 --ENIIENTLTDHHI 87 (277)
T ss_dssp --HHHHHHHHHHC-C
T ss_pred --hHHHHHHHHcCCC
Confidence 23466 6777665
No 304
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=34.10 E-value=1.4e+02 Score=27.63 Aligned_cols=121 Identities=12% Similarity=0.053 Sum_probs=68.5
Q ss_pred eEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhc-CCeEEEEcCCChhhHH
Q 006683 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETA 111 (635)
Q Consensus 34 ~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~ 111 (635)
.=+|+++.... ......-..|++.|+++. +|.++... .....+...+.+.+.+++.. ..+.+|+. .+...+.
T Consensus 133 ~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~----~g~~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~ 206 (288)
T 1gud_A 133 GGEVAIIEGKAGNASGEARRNGATEAFKKA----SQIKLVAS-QPADWDRIKALDVATNVLQRNPNIKAIYC-ANDTMAM 206 (288)
T ss_dssp CEEEEEEECSTTCHHHHHHHHHHHHHHHTC----TTEEEEEE-EECTTCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHH
T ss_pred CCEEEEEeCCCCCchHhHHHHHHHHHHHhC----CCcEEEEe-ecCCccHHHHHHHHHHHHHhCCCceEEEE-CCCchHH
Confidence 46888887543 222344567888888752 24544332 33445777788888888854 46889997 4445556
Q ss_pred HHHHhhccCCcc----EEeecCCCCCCCCCCCCCce-EEEEecCcHHHHHHHHHHH
Q 006683 112 VVAEIASRVQVP----ILSFAAPAVTPLSMSRRWPY-LIRMASNDSEQMKCIADLA 162 (635)
Q Consensus 112 ~v~~~~~~~~ip----~Is~~~~~~~~~l~~~~~p~-~~r~~p~~~~~~~al~~~l 162 (635)
.+...+.+.++| ++++... ......-..|. +..+..+...+++..+++|
T Consensus 207 g~~~al~~~G~~~dv~vvGfD~~--~~~~~~~~~p~~lttv~q~~~~~g~~a~~~l 260 (288)
T 1gud_A 207 GVAQAVANAGKTGKVLVVGTDGI--PEARKMVEAGQMTATVAQNPADIGATGLKLM 260 (288)
T ss_dssp HHHHHHHHTTCTTTSEEEEESCC--HHHHHHHHHTSSCEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCeEEEEeCCC--HHHHHHHHcCccEEEEEcCHHHHHHHHHHHH
Confidence 666666666554 6665433 11111101122 3445556666666666654
No 305
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=34.02 E-value=33 Score=32.45 Aligned_cols=86 Identities=14% Similarity=0.029 Sum_probs=52.8
Q ss_pred HHHHHCCCeEEEEEEEc-------CCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCc
Q 006683 160 DLARKYNWRRVAAIYED-------NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQS 232 (635)
Q Consensus 160 ~~l~~~~w~~vaii~~~-------~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~ 232 (635)
.-|+.-.-+.|+++..+ ++|. ..+.+.+.+.+++.| ..+... .... ........++.+.+.+.
T Consensus 15 r~L~~~~~~~Igvi~~~~~~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~---~~~~----~~~~~~~~~~~l~~~~v 84 (305)
T 3huu_A 15 RTLITNKTLTIGLIQKSSAPEIRQNPFN--SDVLNGINQACNVRG-YSTRMT---VSEN----SGDLYHEVKTMIQSKSV 84 (305)
T ss_dssp ------CCCEEEEECSCCSHHHHTSHHH--HHHHHHHHHHHHHHT-CEEEEC---CCSS----HHHHHHHHHHHHHTTCC
T ss_pred HHhhhCCCCEEEEEeCCCccccccCcHH--HHHHHHHHHHHHHCC-CEEEEE---eCCC----ChHHHHHHHHHHHhCCC
Confidence 33444456789999876 3355 677888999999999 776542 1111 11334567788888899
Q ss_pred eEEEEecCChhHHHHHHHHHHHcCC
Q 006683 233 RVFIVLQASLDMTIHLFTEANRMGL 257 (635)
Q Consensus 233 ~vii~~~~~~~~~~~~l~~a~~~g~ 257 (635)
|.||+ ...... ...++.+.+.++
T Consensus 85 dgiIi-~~~~~~-~~~~~~l~~~~i 107 (305)
T 3huu_A 85 DGFIL-LYSLKD-DPIEHLLNEFKV 107 (305)
T ss_dssp SEEEE-SSCBTT-CHHHHHHHHTTC
T ss_pred CEEEE-eCCcCC-cHHHHHHHHcCC
Confidence 99998 543322 245666777776
No 306
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=33.95 E-value=70 Score=29.85 Aligned_cols=78 Identities=14% Similarity=0.011 Sum_probs=49.3
Q ss_pred eEEEEEEEc--CCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHH
Q 006683 168 RRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (635)
Q Consensus 168 ~~vaii~~~--~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~ 245 (635)
+.|+++..+ ++|. ..+.+.+.+.+++.| ..+.... . .. + .......++.+.+.++|.||+ ......
T Consensus 17 ~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~--~-~~---~-~~~~~~~~~~l~~~~vdgiIi-~~~~~~- 84 (289)
T 2fep_A 17 TTVGVIIPDISSIFY--SELARGIEDIATMYK-YNIILSN--S-DQ---N-MEKELHLLNTMLGKQVDGIVF-MGGNIT- 84 (289)
T ss_dssp CEEEEEESCTTSHHH--HHHHHHHHHHHHHTT-CEEEEEE--C-TT---C-HHHHHHHHHHHHHTTCSEEEE-CCSCCC-
T ss_pred CeEEEEeCCCCCchH--HHHHHHHHHHHHHcC-CEEEEEe--C-CC---C-HHHHHHHHHHHHhCCCCEEEE-ecCCCC-
Confidence 578888865 3455 667788888999999 7765432 1 11 1 133456777888789999988 543211
Q ss_pred HHHHHHHHHcCC
Q 006683 246 IHLFTEANRMGL 257 (635)
Q Consensus 246 ~~~l~~a~~~g~ 257 (635)
...++.+.+.++
T Consensus 85 ~~~~~~l~~~~i 96 (289)
T 2fep_A 85 DEHVAEFKRSPV 96 (289)
T ss_dssp HHHHHHHHHSSS
T ss_pred HHHHHHHHhcCC
Confidence 234555666665
No 307
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=33.80 E-value=77 Score=29.58 Aligned_cols=70 Identities=14% Similarity=0.128 Sum_probs=45.2
Q ss_pred ceeHHHHHHHHHHC-CCcccEEEecCCCChhhHHHHHHcCcccEEEecccccccccccccccccce-eeeeEEEEeCCCC
Q 006683 489 GFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYA-ESGFSMIVPAKQE 566 (635)
Q Consensus 489 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~-~~~~~~~v~~~~~ 566 (635)
.+-.+++..+.++. +.++++... +...++..|.+|++|+++...... ...+. ..+.. .....++++++.+
T Consensus 108 ~~l~~~l~~f~~~~P~i~i~l~~~----~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~~~~~~~v~~~~~p 179 (306)
T 3fzv_A 108 LYLPGLIAGFRQAYPGVEIRIRDG----EQQELVQGLTSGRFDLAFLYEHDL---DSTIE-TEPLMPPQRPHALLPEGHR 179 (306)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEE----CHHHHHHHHHHTSCSEEEECSSSC---CTTEE-EEESSCCBCCEEEEETTCT
T ss_pred HHHHHHHHHHHHHCCCeEEEEEeC----CHHHHHHHHHCCCccEEEEecccc---ccccc-eeeeeeccccEEEecCCCc
Confidence 34567888888776 555444432 377889999999999998643222 22222 23555 6677788877654
No 308
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=33.73 E-value=96 Score=29.29 Aligned_cols=68 Identities=15% Similarity=0.148 Sum_probs=45.6
Q ss_pred ceeHHHHHHHHHHC-CCcccEEEecCCCChhhHHHHHHcCcccEEEecccccccccccccccccceeeeeEEEEeCC
Q 006683 489 GFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAK 564 (635)
Q Consensus 489 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~ 564 (635)
.+-.+++..+.++. +.++++. . ++...++..|.+|++|+++...... ...+ -..+.....++++++++
T Consensus 103 ~~l~~~l~~f~~~~P~v~l~l~--~--~~~~~~~~~l~~g~~Dlai~~~~~~---~~~l-~~~~L~~~~~~~v~~~~ 171 (313)
T 2h98_A 103 GLLPEIIYLFRQQNPEIHIELI--E--CGTKDQINALKQGKIDLGFGRLKIT---DPAI-RRIMLHKEQLKLAIHKH 171 (313)
T ss_dssp TTHHHHHHHHHHHCTTSEEEEE--E--CCHHHHHHHHHHTSCSEEEESSCCC---CTTE-EEEEEEEEEEEEEEETT
T ss_pred hHHHHHHHHHHHHCCCeEEEEE--e--CChHHHHHHHHcCCCCEEEEeCCCC---CCCe-eEEEeeeCcEEEEEcCC
Confidence 34568888888876 5664443 3 2367899999999999998643221 1222 23577788888888765
No 309
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=33.29 E-value=2.8e+02 Score=25.28 Aligned_cols=118 Identities=13% Similarity=0.083 Sum_probs=63.9
Q ss_pred EEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhc-CCeEEEEcCCChhhHHHH
Q 006683 36 KIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAVV 113 (635)
Q Consensus 36 ~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~v 113 (635)
+|+++.... ......-..|++.++++.+-.. ... .+.....+...+.+.+.+++.. .++.+|+... ...+..+
T Consensus 128 ~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~---~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~-d~~a~g~ 202 (289)
T 1dbq_A 128 EIGVIPGPLERNTGAGRLAGFMKAMEEAMIKV---PES-WIVQGDFEPESGYRAMQQILSQPHRPTAVFCGG-DIMAMGA 202 (289)
T ss_dssp SEEEECCC------CHHHHHHHHHHHHTTCCC---CGG-GBCCCCSSHHHHHHHHHHHHTSSSCCSEEEESC-HHHHHHH
T ss_pred eEEEEecCCccccHHHHHHHHHHHHHHCCCCC---ChH-HeEeCCCCHHHHHHHHHHHHhCCCCCCEEEECC-cHHHHHH
Confidence 566665432 2223455677777777654221 000 1122334666777788888853 5788999743 4445555
Q ss_pred HHhhccCC--cc----EEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH
Q 006683 114 AEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA 162 (635)
Q Consensus 114 ~~~~~~~~--ip----~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l 162 (635)
...+...+ +| ++++... +. .....|.+..+..+...++...+++|
T Consensus 203 ~~al~~~G~~vP~di~vvg~d~~---~~-~~~~~p~lttv~~~~~~~g~~a~~~l 253 (289)
T 1dbq_A 203 LCAADEMGLRVPQDVSLIGYDNV---RN-ARYFTPALTTIHQPKDSLGETAFNML 253 (289)
T ss_dssp HHHHHHTTCCTTTTCEEEEEECC---TT-GGGSSSCCEEEECCSHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCceEEEeeCCc---hH-hccCCCccccccCCHHHHHHHHHHHH
Confidence 55554443 34 7777655 22 22222444556666677777766665
No 310
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=33.29 E-value=50 Score=30.63 Aligned_cols=69 Identities=13% Similarity=0.097 Sum_probs=45.0
Q ss_pred HHHHCCCeEEEEEEEcC--CCCCCcchHHHHHHHHhccCCeE-EEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEE
Q 006683 161 LARKYNWRRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSE-IQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIV 237 (635)
Q Consensus 161 ~l~~~~w~~vaii~~~~--~~g~~~~~~~~~~~~l~~~g~~~-v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~ 237 (635)
-|+.-+-+.|+++..+. +|. ..+.+.+.+.+++.| .. +... .... + .......++.+.+.++|.||+
T Consensus 4 ~L~~~~~~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~---~~~~---~-~~~~~~~~~~l~~~~vdgiIi 73 (277)
T 3hs3_A 4 TLYQKKSKMIGIIIPDLNNRFY--AQIIDGIQEVIQKEG-YTALISF---STNS---D-VKKYQNAIINFENNNVDGIIT 73 (277)
T ss_dssp ----CCCCEEEEEESCTTSHHH--HHHHHHHHHHHHHTT-CEEEEEE---CSSC---C-HHHHHHHHHHHHHTTCSEEEE
T ss_pred hhhcCCCCEEEEEeCCCCChhH--HHHHHHHHHHHHHCC-CCEEEEE---eCCC---C-hHHHHHHHHHHHhCCCCEEEE
Confidence 34455567899998763 355 677888999999999 77 5432 1111 1 134556788888889999998
Q ss_pred ecC
Q 006683 238 LQA 240 (635)
Q Consensus 238 ~~~ 240 (635)
..
T Consensus 74 -~~ 75 (277)
T 3hs3_A 74 -SA 75 (277)
T ss_dssp -EC
T ss_pred -cc
Confidence 54
No 311
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=32.89 E-value=18 Score=32.35 Aligned_cols=31 Identities=13% Similarity=0.046 Sum_probs=26.6
Q ss_pred eEEEEcCCChhhHHHHHHhhccCCccEEeec
Q 006683 98 VKVIAGMETWEETAVVAEIASRVQVPILSFA 128 (635)
Q Consensus 98 v~aiiG~~~s~~~~~v~~~~~~~~ip~Is~~ 128 (635)
+.+++||..|.=......+++.+++|+||.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istG 32 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTG 32 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHH
Confidence 4678999999877778889999999999865
No 312
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=32.83 E-value=2.9e+02 Score=25.31 Aligned_cols=119 Identities=8% Similarity=0.024 Sum_probs=68.1
Q ss_pred EEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhc-CCeEEEEcCCChhhHHH
Q 006683 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAV 112 (635)
Q Consensus 35 i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~ 112 (635)
=+||++.... ......-..|++.++++.+-.. ....+ .....+...+.+.+.+++.. ..+.+|+.. +...+..
T Consensus 129 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~---~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~A~g 203 (290)
T 2rgy_A 129 RKLAVISGPFTASDNVERLDGFFDELARHGIAR---DSVPL-IESDFSPEGGYAATCQLLESKAPFTGLFCA-NDTMAVS 203 (290)
T ss_dssp CSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCG---GGSCE-EECCSSHHHHHHHHHHHHHHTCCCSEEEES-SHHHHHH
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCC---CcccE-EecCCChhHHHHHHHHHHhCCCCCcEEEEC-CcHHHHH
Confidence 3678877653 2233455678888887754221 10111 22345667777788888854 578899963 4444555
Q ss_pred HHHhhccCC------ccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH
Q 006683 113 VAEIASRVQ------VPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA 162 (635)
Q Consensus 113 v~~~~~~~~------ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l 162 (635)
+...+...+ +.++++... .......|.+..+..+...++...+++|
T Consensus 204 ~~~al~~~G~~vP~di~vvg~D~~----~~~~~~~p~lttv~~~~~~~g~~a~~~l 255 (290)
T 2rgy_A 204 ALARFQQLGISVPGDVSVIGYDDD----YSAAYAAPALTSVHIPTAELTQNAVRWL 255 (290)
T ss_dssp HHHHHHHTTCCTTTTCEEEEEECC----TTSTTSSSCCEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCceEEEEeCCc----hHhcccCCCceEEeCCHHHHHHHHHHHH
Confidence 555554443 347777655 2222223555566667777777777765
No 313
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=32.58 E-value=2.8e+02 Score=26.98 Aligned_cols=133 Identities=11% Similarity=0.159 Sum_probs=76.8
Q ss_pred EEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHHHHH
Q 006683 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (635)
Q Consensus 35 i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (635)
-.|+.+|-..+. ....+|+.|+.++. |..+.+...++.-.-.+.+.-..+.++.- +++|+-=.. ....+.
T Consensus 42 K~la~lF~epST---RTR~SFE~A~~~LG----g~vi~l~~~~ssl~kgEsl~DTarvLs~y-~D~IviR~~--~~~~~~ 111 (355)
T 4a8p_A 42 KSLGMIFQQSST---RTRVSFETAMEQLG----GHGEYLAPGQIQLGGHETIEDTSRVLSRL-VDILMARVE--RHHSIV 111 (355)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHTT----CEEEEECBTTBCBTTTBCHHHHHHHHTTT-CSEEEEECS--SHHHHH
T ss_pred CEEEEEecCCCh---hhHhhHHHHHHHcC----CeEEEeCcccccCCCCcCHHHHHHHHHHh-CCEEEEecC--cHHHHH
Confidence 467888877643 56778999998875 44555544443322223344444455333 444442111 123445
Q ss_pred HhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH---HHC--C----CeEEEEEEEcCCCCCCcch
Q 006683 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKY--N----WRRVAAIYEDNVYGGDSGK 185 (635)
Q Consensus 115 ~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l---~~~--~----w~~vaii~~~~~~g~~~~~ 185 (635)
.+++..++|+|+.+.. ...| .+++++++ +++ | ..+|+++.+ . + ..
T Consensus 112 ~lA~~~~vPVINag~~--------~~HP------------tQaLaDl~TI~E~~~~G~~l~glkva~vGD--~-~---rv 165 (355)
T 4a8p_A 112 DLANCATIPVINGMSD--------YNHP------------TQELGDLCTMVEHLPEGKKLEDCKVVFVGD--A-T---QV 165 (355)
T ss_dssp HHHHHCSSCEEECCCS--------SCCH------------HHHHHHHHHHHHTCCTTCCGGGCEEEEESC--C-C---HH
T ss_pred HHHHhCCCCEEeCCCC--------CCCc------------HHHHHHHHHHHHHhhcCCCCCCCEEEEECC--C-c---hh
Confidence 5666778999976422 1223 36777765 566 5 247776642 2 3 45
Q ss_pred HHHHHHHHhccCCeEEEEE
Q 006683 186 LALLAEALQNVSSSEIQSR 204 (635)
Q Consensus 186 ~~~~~~~l~~~g~~~v~~~ 204 (635)
+..+...+...| .++...
T Consensus 166 a~Sl~~~~~~~G-~~v~~~ 183 (355)
T 4a8p_A 166 CFSLGLITTKMG-MNFVHF 183 (355)
T ss_dssp HHHHHHHHHHTT-CEEEEE
T ss_pred HHHHHHHHHHcC-CEEEEE
Confidence 777777888889 776654
No 314
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=32.47 E-value=42 Score=34.17 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=21.7
Q ss_pred HHHHHHHHHhHhcCCCCeEEEEEEec
Q 006683 52 ITAMKIAVQNFNSDSRNHKLSLQIRD 77 (635)
Q Consensus 52 ~~a~~~Av~~iN~~~~g~~l~~~~~D 77 (635)
...++..++++++..||++|+++...
T Consensus 41 ~~~~~~~~~~F~~~~pgi~V~~~~~~ 66 (458)
T 3uor_A 41 AEVVAELVADFEKQNPTIHVDVQNIP 66 (458)
T ss_dssp HHHHHHHHHHHHTTCTTEEEEEEECC
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEEcC
Confidence 45788899999999999999988764
No 315
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=31.97 E-value=1e+02 Score=26.42 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=34.8
Q ss_pred EEEEEEEcCC--CCCC-cchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEE
Q 006683 169 RVAAIYEDNV--YGGD-SGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIV 237 (635)
Q Consensus 169 ~vaii~~~~~--~g~~-~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~ 237 (635)
++++|...|. .|.- ..-...+.+.+++.| +.+.....++.+. ..+.+.+++..+ .+|+||.
T Consensus 5 ~v~IistGdEll~G~i~DtN~~~l~~~L~~~G-~~v~~~~iv~Dd~------~~I~~~l~~a~~-~~DlVit 68 (172)
T 3kbq_A 5 NASVITVGNEILKGRTVNTNAAFIGNFLTYHG-YQVRRGFVVMDDL------DEIGWAFRVALE-VSDLVVS 68 (172)
T ss_dssp EEEEEEECHHHHTTSSCCHHHHHHHHHHHHTT-CEEEEEEEECSCH------HHHHHHHHHHHH-HCSEEEE
T ss_pred EEEEEEEcccccCCcEEeHHHHHHHHHHHHCC-CEEEEEEEeCCCH------HHHHHHHHHHHh-cCCEEEE
Confidence 5666665442 1200 233455777777788 7777666555433 556666665544 3677777
No 316
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=31.85 E-value=89 Score=29.09 Aligned_cols=70 Identities=13% Similarity=0.247 Sum_probs=44.8
Q ss_pred HHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccEEEecccc-c------ccccccccccccceeeeeEEEEeCC
Q 006683 492 IELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTI-L------GNRTEYVEFTQPYAESGFSMIVPAK 564 (635)
Q Consensus 492 ~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~-~------~~r~~~~~fs~p~~~~~~~~~v~~~ 564 (635)
..++..+-+.+|+++++.... + .-+...|.+|++|+....... + ..+.+...+..-+....+.++||+.
T Consensus 181 ~~v~~~~Le~~Gy~Ve~~~~~---~-~~~~~al~~G~iD~~~e~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~Vp~~ 256 (268)
T 2b4l_A 181 TNVIGKVLEDLGYEVTLTQVE---A-GPMWTAIATGSADASLSAWLPNTHKAYAAKYKGKYDDIGTSMTGVKMGLVVPQY 256 (268)
T ss_dssp HHHHHHHHHHHTCEEEEEECC---T-THHHHHHHHTSSSEEEEEEETTTTHHHHHHTTTSEEEEEEEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHcCCceEEEECC---h-HHHHHHHHCCCCeEEehhhcCcCcHHHHHHHcCCeEEccCCCCCCeEEEEEehh
Confidence 455656666789997766532 2 567889999999998544322 1 1122444555445566788999876
Q ss_pred C
Q 006683 565 Q 565 (635)
Q Consensus 565 ~ 565 (635)
.
T Consensus 257 ~ 257 (268)
T 2b4l_A 257 M 257 (268)
T ss_dssp C
T ss_pred h
Confidence 5
No 317
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=31.83 E-value=37 Score=31.83 Aligned_cols=85 Identities=12% Similarity=0.074 Sum_probs=49.9
Q ss_pred HHHCCCeEEEEEEEc--CCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEec
Q 006683 162 ARKYNWRRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQ 239 (635)
Q Consensus 162 l~~~~w~~vaii~~~--~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~ 239 (635)
|+.-.-++|+++..+ ++|. ..+.+.+.+.+++.| ..+.... . .. + .......++.+.+.++|.||+ .
T Consensus 15 L~~~~~~~Ig~i~~~~~~~~~--~~~~~gi~~~~~~~g-~~~~~~~--~-~~---~-~~~~~~~~~~l~~~~vdgii~-~ 83 (293)
T 2iks_A 15 LRAGRTRSIGLVIPDLENTSY--TRIANYLERQARQRG-YQLLIAC--S-ED---Q-PDNEMRCIEHLLQRQVDAIIV-S 83 (293)
T ss_dssp ---CCCCEEEEEESCSCSHHH--HHHHHHHHHHHHHTT-CEEEEEE--C-TT---C-HHHHHHHHHHHHHTTCSEEEE-C
T ss_pred hhcCCCcEEEEEeCCCcCcHH--HHHHHHHHHHHHHCC-CEEEEEc--C-CC---C-HHHHHHHHHHHHHcCCCEEEE-e
Confidence 444455689998864 3354 567788888999999 7776432 1 11 1 133456777887788999988 5
Q ss_pred CChhHHHHHHHHHHHcCC
Q 006683 240 ASLDMTIHLFTEANRMGL 257 (635)
Q Consensus 240 ~~~~~~~~~l~~a~~~g~ 257 (635)
........+++.+.+.++
T Consensus 84 ~~~~~~~~~~~~~~~~~i 101 (293)
T 2iks_A 84 TSLPPEHPFYQRWANDPF 101 (293)
T ss_dssp CSSCTTCHHHHTTTTSSS
T ss_pred CCCCCcHHHHHHHHhCCC
Confidence 432221234444544444
No 318
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=31.77 E-value=2.4e+02 Score=25.92 Aligned_cols=120 Identities=14% Similarity=0.083 Sum_probs=68.5
Q ss_pred EEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHHHH
Q 006683 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (635)
Q Consensus 35 i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v 113 (635)
=+||++.... ......-..|++.++++.+-.... .+ +.....+...+.+.+.+++...++.+|+... ...+..+
T Consensus 126 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~---~~-~~~~~~~~~~~~~~~~~~l~~~~~~ai~~~~-d~~a~g~ 200 (290)
T 3clk_A 126 RQIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQ---EW-IKPGDYSYTSGEQAMKAFGKNTDLTGIIAAS-DMTAIGI 200 (290)
T ss_dssp CSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCG---GG-EECCCSSHHHHHHHHHHHCTTCCCSEEEESS-HHHHHHH
T ss_pred CEEEEEeCCCCCcchHHHHHHHHHHHHHcCCCCCc---ce-EEcCCCChhhHHHHHHHHhccCCCcEEEECC-cHHHHHH
Confidence 3577776543 333456677888888875432110 11 1233456677777788887435688998743 4445455
Q ss_pred HHhhccCC--cc----EEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHH
Q 006683 114 AEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLAR 163 (635)
Q Consensus 114 ~~~~~~~~--ip----~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~ 163 (635)
...+...+ +| ++++... .+.....|.+-.+..+...++...+++|.
T Consensus 201 ~~al~~~g~~vP~di~vvg~d~~----~~~~~~~p~lttv~~~~~~~g~~av~~l~ 252 (290)
T 3clk_A 201 LNQASSFGIEVPKDLSIVSIDGT----EMCKITRPQLTSISQDFFQMGVTGVQQIH 252 (290)
T ss_dssp HHHHHHTTCCTTTTCEEEEEECC----THHHHSSSCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCceEEEEeCCh----HHHhhcCCCceEEecCHHHHHHHHHHHHH
Confidence 55554443 33 7777644 22221224455566677777887777763
No 319
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=31.66 E-value=2.2e+02 Score=23.70 Aligned_cols=89 Identities=8% Similarity=0.013 Sum_probs=51.0
Q ss_pred eEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCCh--hHH
Q 006683 168 RRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL--DMT 245 (635)
Q Consensus 168 ~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~--~~~ 245 (635)
+++.|+|.+. +|+-+.+++.+.+.+.+.| +.+.... +... .+....+..+. ..|.||+ .+.. ...
T Consensus 5 ~kv~IvY~S~-~GnT~~iA~~ia~~l~~~g-~~v~~~~-~~~~-------~~~~~~~~~~~--~~d~ii~-Gspty~g~~ 71 (159)
T 3fni_A 5 TSIGVFYVSE-YGYSDRLAQAIINGITKTG-VGVDVVD-LGAA-------VDLQELRELVG--RCTGLVI-GMSPAASAA 71 (159)
T ss_dssp CEEEEEECTT-STTHHHHHHHHHHHHHHTT-CEEEEEE-SSSC-------CCHHHHHHHHH--TEEEEEE-ECCBTTSHH
T ss_pred CEEEEEEECC-ChHHHHHHHHHHHHHHHCC-CeEEEEE-CcCc-------CCHHHHHHHHH--hCCEEEE-EcCcCCCCc
Confidence 5788999775 4422677788888888888 7654322 2221 02445555565 4677777 5543 111
Q ss_pred --HHHHHHHHHcCCCCCCeEEEeeCc
Q 006683 246 --IHLFTEANRMGLVGKDSVWIVTNT 269 (635)
Q Consensus 246 --~~~l~~a~~~g~~~~~~~~i~~~~ 269 (635)
..++..+....+.++....+++..
T Consensus 72 p~~~~l~~l~~~~~~~k~va~fgs~g 97 (159)
T 3fni_A 72 SIQGALSTILGSVNEKQAVGIFETGG 97 (159)
T ss_dssp HHHHHHHHHHHHCCTTSEEEEECCSS
T ss_pred cHHHHHHHHHhhcccCCEEEEEEcCC
Confidence 356666666566555444444433
No 320
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=31.40 E-value=63 Score=29.66 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=33.6
Q ss_pred HHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccEEEeccc
Q 006683 492 IELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLT 537 (635)
Q Consensus 492 ~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~ 537 (635)
.++++.-.+++|++++++.++ |......+..|+.||++....
T Consensus 145 a~~iq~~l~~iGi~v~i~~~~----~~~~~~~~~~~~~d~~~~~w~ 186 (258)
T 3lvu_A 145 LEIYTRALERLGIAAQIEKVD----NAQYTARVAELDFDLTPFRRD 186 (258)
T ss_dssp HHHHHHHHHTTTCCCEEEEEC----HHHHHHHHHTTCCSEEEEEEE
T ss_pred HHHHHHHHHHcCCeeEEEecC----HHHHHHHhccCCccEEEecCC
Confidence 456666666789999888877 888888899999999876554
No 321
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=31.21 E-value=82 Score=29.13 Aligned_cols=69 Identities=13% Similarity=0.076 Sum_probs=45.7
Q ss_pred ceeHHHHHHHHHHC-CCcccEEEecCCCChhhHHHHHHcCcccEEEecccccccccccccccccceeeeeEEEEeCCC
Q 006683 489 GFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQ 565 (635)
Q Consensus 489 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~ 565 (635)
.+-.+++..+.++. +.+ +.+.. ++...++..|.+|++|+++...... ...+. +.+.....++++++++.
T Consensus 104 ~~l~~~l~~f~~~~P~i~--l~~~~--~~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~~~~~~v~~~~~ 173 (294)
T 1ixc_A 104 RSLPLLLRAFLTSTPTAT--VSLTH--MTKDEQVEGLLAGTIHVGFSRFFPR---HPGIE-IVNIAQEDLYLAVHRSQ 173 (294)
T ss_dssp THHHHHHHHHHHHCTTEE--EEEEE--CCHHHHHHHHHHTSCSEEEESCCCC---CTTEE-EEEEEEEEEEEEEEGGG
T ss_pred HHHHHHHHHHHHHCCCcE--EEEEe--CCHHHHHHHHHCCCccEEEEecCCC---CCCce-EEEEeeccEEEEEeCCC
Confidence 34568888888776 445 44444 2356789999999999998654322 22222 35777888888887654
No 322
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=30.69 E-value=1.3e+02 Score=21.66 Aligned_cols=40 Identities=25% Similarity=0.339 Sum_probs=29.1
Q ss_pred HHHHHHHHhhhhc-CceEEEEecCChhHHHHHHHHHHHcCC
Q 006683 218 EAVRGELKKVQDK-QSRVFIVLQASLDMTIHLFTEANRMGL 257 (635)
Q Consensus 218 ~~~~~~l~~l~~~-~~~vii~~~~~~~~~~~~l~~a~~~g~ 257 (635)
.|++.+++.+++. ++-+|++...+-.+...|-.+|.+.|.
T Consensus 38 qdirdiiksmkdngkplvvfvngasqndvnefqneakkegv 78 (112)
T 2lnd_A 38 QDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGV 78 (112)
T ss_dssp HHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCc
Confidence 6788888888876 566666645556777778778887775
No 323
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=30.61 E-value=2.4e+02 Score=23.69 Aligned_cols=95 Identities=14% Similarity=-0.024 Sum_probs=52.0
Q ss_pred HHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEee--eCCCCCCCCchHHHHHHHHhhh-hcCc
Q 006683 156 KCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLV--LPPISSISDPKEAVRGELKKVQ-DKQS 232 (635)
Q Consensus 156 ~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~--~~~~~~~~d~~~~~~~~l~~l~-~~~~ 232 (635)
..+.+.+...+--..+..|.+ ..+ ....+.+.+.+...| +++..... +..+....+ .|..-.+..+. ....
T Consensus 36 ~~l~~~~~~~g~l~~~~~Y~~-~~~--~~~~~~~~~~L~~~g-~~v~~~p~~~~~~~~~k~~--~Dv~laiD~~~~a~~~ 109 (165)
T 2qip_A 36 NQFWYVATQEKEVVSAKAYAI-ASN--DPKQRQFHHILRGVG-FEVMLKPYIQRRDGSAKGD--WDVGITLDAIEIAPDV 109 (165)
T ss_dssp HHHHHHHTTTEEEEEEEEEEC-CCC--CHHHHHHHHHHHHHT-CEEEECCCCCCSSCCCSCC--CHHHHHHHHHHHGGGC
T ss_pred HHHHHHHhcCCEEEEEEEEEc-cCC--chhHHHHHHHHHHCC-cEEEEEeeeeccCCccCCC--ccHHHHHHHHHhhccC
Confidence 355555655554444556632 222 344677888999999 88764321 111111112 33322222221 1356
Q ss_pred eEEEEecCChhHHHHHHHHHHHc-CC
Q 006683 233 RVFIVLQASLDMTIHLFTEANRM-GL 257 (635)
Q Consensus 233 ~vii~~~~~~~~~~~~l~~a~~~-g~ 257 (635)
|.+++ .+.-.+....++.+++. |.
T Consensus 110 d~~vL-vSgD~DF~plv~~lr~~~G~ 134 (165)
T 2qip_A 110 DRVIL-VSGDGDFSLLVERIQQRYNK 134 (165)
T ss_dssp SEEEE-ECCCGGGHHHHHHHHHHHCC
T ss_pred CEEEE-EECChhHHHHHHHHHHHcCc
Confidence 77777 55555888888889984 85
No 324
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}
Probab=30.54 E-value=2.6e+02 Score=26.82 Aligned_cols=133 Identities=13% Similarity=0.151 Sum_probs=73.1
Q ss_pred EEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEE--EEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHHH
Q 006683 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLS--LQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAV 112 (635)
Q Consensus 35 i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~--~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~ 112 (635)
-.|+.+|-..+ .....+|+.|+.++... .+. +.. ++.-.-.+.+.-..+.++.- +++|+-=.. ....
T Consensus 45 k~la~lF~e~S---TRTR~SFE~A~~~LGg~----~i~~~l~~-~ss~~kgEsl~DTarvls~~-~D~iviR~~--~~~~ 113 (328)
T 3grf_A 45 KTLLAFFAKPS---LRTRVSLETAMTRLGGH----AIYYELGA-NSNVGGKETVQDTAEVFSRM-VDICTARLA--TKEM 113 (328)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHHTCE----EEEEEC-----------CHHHHHHHHTTT-CSEEEEECS--SHHH
T ss_pred CEEEEEecCCC---chHHHHHHHHHHHCCCe----EEccccCc-cccCCCCCCHHHHHHHHHhh-CCEEEEecC--ChhH
Confidence 46788887654 46778999999988643 444 544 54433334445555555333 454442111 1234
Q ss_pred HHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH---HHCC----------CeEEEEEEEcCCC
Q 006683 113 VAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYN----------WRRVAAIYEDNVY 179 (635)
Q Consensus 113 v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l---~~~~----------w~~vaii~~~~~~ 179 (635)
+..+++..++|+|+.+.. ...| .+++++++ +++| ..+|+++.+ ..
T Consensus 114 ~~~lA~~~~vPVINag~~--------~~HP------------tQaLaDl~Ti~e~~g~~~~~~~~l~gl~va~vGD--~~ 171 (328)
T 3grf_A 114 MREMAQHASVPCINALDD--------FGHP------------LQMVCDFMTIKEKFTAAGEFSNGFKGIKFAYCGD--SM 171 (328)
T ss_dssp HHHHHHHCSSCEEESSCS--------SCCH------------HHHHHHHHHHHHHHHHTTCCTTTGGGCCEEEESC--CS
T ss_pred HHHHHHhCCCCEEeCCCC--------CCCc------------HHHHHHHHHHHHHhCCccccccccCCcEEEEeCC--CC
Confidence 455667778999976422 1223 26666664 4554 357777743 21
Q ss_pred CCCcchHHHHHHHHhccCCeEEEEE
Q 006683 180 GGDSGKLALLAEALQNVSSSEIQSR 204 (635)
Q Consensus 180 g~~~~~~~~~~~~l~~~g~~~v~~~ 204 (635)
...+..+...+...| .++...
T Consensus 172 ---~~va~Sl~~~~~~~G-~~v~~~ 192 (328)
T 3grf_A 172 ---NNVTYDLMRGCALLG-MECHVC 192 (328)
T ss_dssp ---SHHHHHHHHHHHHHT-CEEEEE
T ss_pred ---cchHHHHHHHHHHcC-CEEEEE
Confidence 235777777888888 776543
No 325
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=30.03 E-value=50 Score=30.87 Aligned_cols=81 Identities=9% Similarity=-0.018 Sum_probs=51.1
Q ss_pred CCCeEEEEEEEcC--CCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCCh
Q 006683 165 YNWRRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL 242 (635)
Q Consensus 165 ~~w~~vaii~~~~--~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~ 242 (635)
-+-+.|+++..+. +|. ..+.+.+++.+++.| ..+..... ... .......++.+.+.+.|.||+ ....
T Consensus 6 ~~~~~Igvv~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~--~~~-----~~~~~~~~~~l~~~~vdgiIi-~~~~ 74 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFF--AEVASGVESEARHKG-YSVLLANT--AED-----IVREREAVGQFFERRVDGLIL-APSE 74 (291)
T ss_dssp -CCCEEEEEESCTTSHHH--HHHHHHHHHHHHHTT-CEEEEEEC--TTC-----HHHHHHHHHHHHHTTCSEEEE-CCCS
T ss_pred CCCcEEEEEECCCcchHH--HHHHHHHHHHHHHCC-CEEEEEeC--CCC-----HHHHHHHHHHHHHCCCCEEEE-eCCC
Confidence 3446788888654 344 567788889999999 77764321 111 134566788888889999998 5443
Q ss_pred hHHHHHHHHHHHcCC
Q 006683 243 DMTIHLFTEANRMGL 257 (635)
Q Consensus 243 ~~~~~~l~~a~~~g~ 257 (635)
. ....++.+.+.++
T Consensus 75 ~-~~~~~~~~~~~~i 88 (291)
T 3egc_A 75 G-EHDYLRTELPKTF 88 (291)
T ss_dssp S-CCHHHHHSSCTTS
T ss_pred C-ChHHHHHhhccCC
Confidence 2 3344555555554
No 326
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=29.96 E-value=1e+02 Score=29.12 Aligned_cols=53 Identities=11% Similarity=0.103 Sum_probs=41.5
Q ss_pred EEEecCCCCHHHHHHH-HHHHhhcCCeEEEEcCCChhhHHHHHHhhccCCccEE
Q 006683 73 LQIRDHNRDPFQAATA-AQELINKEKVKVIAGMETWEETAVVAEIASRVQVPIL 125 (635)
Q Consensus 73 ~~~~D~~~~~~~a~~~-~~~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~ip~I 125 (635)
+...|+=|+...--+. +.+|..+-.+..|+|+..|+.+..+.++|...+.|..
T Consensus 186 ~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty 239 (297)
T 3dnf_A 186 VKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTY 239 (297)
T ss_dssp EEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEE
T ss_pred CCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEE
Confidence 3468888887665554 5566656788899999999999999999999887754
No 327
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=29.79 E-value=1.5e+02 Score=28.28 Aligned_cols=129 Identities=15% Similarity=0.251 Sum_probs=75.2
Q ss_pred EEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCC---CC-HHHHHHHHHHHhhcCCeEEEEcCCChhhH
Q 006683 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHN---RD-PFQAATAAQELINKEKVKVIAGMETWEET 110 (635)
Q Consensus 35 i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~---~~-~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (635)
-.|+.+|-..+ .....+|+.|+.++.. ..+.+...++. +. -..+++.+..+. .++++=.+. .
T Consensus 46 k~la~lF~e~S---TRTR~SFE~A~~~LGg----~~i~l~~~~ss~~kgEsl~DTarvls~~~---D~iviR~~~----~ 111 (309)
T 4f2g_A 46 RTLAMIFEKSS---TRTRLSFEAGIFQLGG----HAVFMSTRDTQLGRGEPVEDSAQVISRMV---DIIMIRTFE----Q 111 (309)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHTTC----EEEEECCSSCEETBEECHHHHHHHHHHHC---SEEEEECSC----H
T ss_pred ceEEEEecCCC---hhhHhhHHHHHHHcCC----eEEEcCcccccCCCCCCHHHHHHHHHHhC---CEEEEecCC----H
Confidence 35888887764 4667899999988763 34544433322 22 222333333332 233333332 2
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH---HHC---CCeEEEEEEEcCCCCCCcc
Q 006683 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKY---NWRRVAAIYEDNVYGGDSG 184 (635)
Q Consensus 111 ~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l---~~~---~w~~vaii~~~~~~g~~~~ 184 (635)
..+..+++..++|+|+.++. ...| .+++++++ +++ ...+|+++.+ + ..
T Consensus 112 ~~~~~lA~~~~vPVINag~~--------~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vGD----~--~~ 165 (309)
T 4f2g_A 112 DIIQRFAENSRVPVINGLTN--------EYHP------------CQVLADIFTYYEHRGPIRGKTVAWVGD----A--NN 165 (309)
T ss_dssp HHHHHHHHTCSSCEEEEECS--------SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC----C--CH
T ss_pred HHHHHHHHhCCCCEEECCCC--------ccCc------------HHHHHHHHHHHHHhCCCCCCEEEEECC----C--cc
Confidence 34555667789999987622 1123 36677765 444 4568888753 2 34
Q ss_pred hHHHHHHHHhccCCeEEEEE
Q 006683 185 KLALLAEALQNVSSSEIQSR 204 (635)
Q Consensus 185 ~~~~~~~~l~~~g~~~v~~~ 204 (635)
.+..+...+...| .++...
T Consensus 166 va~Sl~~~~~~~G-~~v~~~ 184 (309)
T 4f2g_A 166 MLYTWIQAARILD-FKLQLS 184 (309)
T ss_dssp HHHHHHHHHHHHT-CEEEEE
T ss_pred hHHHHHHHHHHcC-CEEEEE
Confidence 6778888888888 776654
No 328
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=29.57 E-value=32 Score=31.96 Aligned_cols=57 Identities=11% Similarity=0.092 Sum_probs=32.0
Q ss_pred CCeEEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcC
Q 006683 32 EEVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGM 104 (635)
Q Consensus 32 ~~~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~ 104 (635)
.+.|+||+..... .-+...+.++.+..|++++++...+ ... ...++. +..+++.++.
T Consensus 27 ~g~l~Ig~~~~~~--------~~l~~~l~~f~~~~P~i~v~i~~~~----~~~---~~~~l~-~g~~Di~i~~ 83 (290)
T 1twy_A 27 ASEITISGSTSVA--------RIMDVLAEKYNQQHPETYVAVQGVG----STA---GISLLK-KGVADIAMTS 83 (290)
T ss_dssp -CEEEEEECHHHH--------HHHHHHHHHHHHHCTTCEEEEEESC----HHH---HHHHHH-TTSCSEEEES
T ss_pred CCCEEEecCcchH--------HHHHHHHHHHHhhCCCceEEEEecC----cHH---HHHHHh-cCCCcEEEec
Confidence 5789999753221 2355566777777778888775432 222 222333 5667766653
No 329
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=29.44 E-value=1.9e+02 Score=26.24 Aligned_cols=94 Identities=1% Similarity=-0.060 Sum_probs=62.4
Q ss_pred HHHHHHHHHHCCCeEEEEEEEc--CCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCc
Q 006683 155 MKCIADLARKYNWRRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQS 232 (635)
Q Consensus 155 ~~al~~~l~~~~w~~vaii~~~--~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~ 232 (635)
....++.++..|.+.|-+.... .... ....+.+++.+++.| +++........ . ....+...++..+..++
T Consensus 32 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~--~~~~~~~~~~l~~~g-l~i~~~~~~~~-~----~~~~~~~~i~~A~~lGa 103 (257)
T 3lmz_A 32 LDTTLKTLERLDIHYLCIKDFHLPLNST--DEQIRAFHDKCAAHK-VTGYAVGPIYM-K----SEEEIDRAFDYAKRVGV 103 (257)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTSCTTCC--HHHHHHHHHHHHHTT-CEEEEEEEEEE-C----SHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCCCC--HHHHHHHHHHHHHcC-CeEEEEecccc-C----CHHHHHHHHHHHHHhCC
Confidence 4566777888898888776432 1122 344678999999999 88775433221 1 22567777777777788
Q ss_pred eEEEEecCChhHHHHHHHHHHHcCC
Q 006683 233 RVFIVLQASLDMTIHLFTEANRMGL 257 (635)
Q Consensus 233 ~vii~~~~~~~~~~~~l~~a~~~g~ 257 (635)
+.|++ ....+....+...|++.|+
T Consensus 104 ~~v~~-~p~~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 104 KLIVG-VPNYELLPYVDKKVKEYDF 127 (257)
T ss_dssp SEEEE-EECGGGHHHHHHHHHHHTC
T ss_pred CEEEe-cCCHHHHHHHHHHHHHcCC
Confidence 88887 6656666666666666665
No 330
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=29.24 E-value=63 Score=29.72 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=33.2
Q ss_pred HHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccEEEeccc
Q 006683 492 IELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLT 537 (635)
Q Consensus 492 ~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~ 537 (635)
.++++.-.+++|++++++.++ |......+..|+.||++.+..
T Consensus 144 a~~iq~~l~~iGI~v~i~~~~----~~~~~~~~~~~~~d~~~~~w~ 185 (259)
T 3pam_A 144 ALAFQSNLSRLGIHAEIRTVD----DSQYQNRLGMFNYDMIIGKLK 185 (259)
T ss_dssp HHHHHHHHHTTTCEEEEEECC----HHHHHHHHHHTCCSEEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEecC----HHHHHHHHhcCCeeEEEeccC
Confidence 456666666789998888776 888888899999999887654
No 331
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=29.13 E-value=90 Score=32.18 Aligned_cols=80 Identities=10% Similarity=0.128 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCCh-hhHHHHHHhhccCCccEEeec
Q 006683 50 QAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETW-EETAVVAEIASRVQVPILSFA 128 (635)
Q Consensus 50 ~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s-~~~~~v~~~~~~~~ip~Is~~ 128 (635)
+...-.+.-++.+|.++ ..+.+++..-.-.++..+.+.+.++=.++++++||-..++ ..+..+...++..++|++-.+
T Consensus 26 ~v~~~~~~~~~~l~~~~-~l~~~vv~~g~v~t~~~~~~~~~~~n~~~~vdgvi~~~~TFs~a~~~i~~l~~l~~PvL~~~ 104 (500)
T 4f2d_A 26 QVTQHAEHVVNALNTEA-KLPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFH 104 (500)
T ss_dssp HHHHHHHHHHHHHHHHT-CCSSEEEECCCBCSHHHHHHHHHHHHHCTTEEEEEEECCSCCCTHHHHHHHHHCCSCEEEEE
T ss_pred HHHHHHHHHHHHhcccc-CCCeEEEecCcCCCHHHHHHHHHHhccccCCcEEEEeCCcCccHHHHHHHHHhcCCCEEEEe
Confidence 44444556677788873 4566777666667777666666666248899999887666 345667788888999999876
Q ss_pred CC
Q 006683 129 AP 130 (635)
Q Consensus 129 ~~ 130 (635)
..
T Consensus 105 ~q 106 (500)
T 4f2d_A 105 TQ 106 (500)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 332
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=28.67 E-value=4.3e+02 Score=26.88 Aligned_cols=145 Identities=11% Similarity=0.089 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHhhcCCeEEEE-cCCC-hhhHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHH
Q 006683 81 DPFQAATAAQELINKEKVKVIA-GMET-WEETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCI 158 (635)
Q Consensus 81 ~~~~a~~~~~~li~~~~v~aii-G~~~-s~~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al 158 (635)
.+..+...+.++. +.++.+|+ .... -.....+..+++.+++.+|.+.+. --.. .. +...+..
T Consensus 45 Pa~~v~~~v~e~~-~~Gv~~viis~Gf~~~~~~~l~~~A~~~g~rliGPNcG--~~~~--~~----~~~~f~~------- 108 (480)
T 3dmy_A 45 AGEYAAELANQAL-DRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCG--TSMI--AG----TPLAFAN------- 108 (480)
T ss_dssp CHHHHHHHHHHHH-HTTCEEEECCCCCCHHHHHHHHHHHHHTTCCEECSSCC--EEEE--TT----EEEESCC-------
T ss_pred CHHHHHHHHHHHH-hcCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCcc--cccc--CC----ccccccC-------
Confidence 3445566666776 55555444 2222 233456777888899999987643 1111 11 1111111
Q ss_pred HHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCC---CCCchHHHHHHHHhhhhc-CceE
Q 006683 159 ADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISS---ISDPKEAVRGELKKVQDK-QSRV 234 (635)
Q Consensus 159 ~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~---~~d~~~~~~~~l~~l~~~-~~~v 234 (635)
.+.-.+|++|..+... ...+...+.+.| +-+.....+-.... ..| .++...++.+.+. +.++
T Consensus 109 -----~~~~G~vaivSqSGal------~~~i~~~~~~~g-~G~S~~Vs~Gn~~l~~~i~d--v~~~D~l~~l~~Dp~T~~ 174 (480)
T 3dmy_A 109 -----VMPEGNIGVIGASGTG------IQELCSQIALAG-EGITHAIGLGGRDLSREVGG--ISALTALEMLSADEKSEV 174 (480)
T ss_dssp -----CCCEEEEEEEESCSHH------HHHHHHHHHHTT-CCEEEEEECCTTTTSTTTTT--HHHHHHHHHHHTCTTCCE
T ss_pred -----CCCCCCEEEEeccHHH------HHHHHHHHHHcC-CCceEEEEcCCCccccccCC--CCHHHHHHHHhcCCCCCE
Confidence 0223589999877543 445566677777 65555444433200 133 6788888888865 7888
Q ss_pred EEEecCC---hhHHHHHHHHHHHcC
Q 006683 235 FIVLQAS---LDMTIHLFTEANRMG 256 (635)
Q Consensus 235 ii~~~~~---~~~~~~~l~~a~~~g 256 (635)
|++ +.. ....+.|++++++.+
T Consensus 175 I~l-y~E~~~e~~~~~f~~~ar~~~ 198 (480)
T 3dmy_A 175 LAF-VSKPPAEAVRLKIVNAMKATG 198 (480)
T ss_dssp EEE-EESCCCHHHHHHHHHHHHHHC
T ss_pred EEE-EEecCCcHHHHHHHHHHHhCC
Confidence 888 663 223477888887643
No 333
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=28.50 E-value=3.9e+02 Score=25.41 Aligned_cols=133 Identities=16% Similarity=0.215 Sum_probs=77.8
Q ss_pred EEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHHHHH
Q 006683 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (635)
Q Consensus 35 i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (635)
-.|+.+|-..+ .....+|+.|+.++. |..+.+...++.-.-.+.+.-..+.++.- +++|+-=.. ....+.
T Consensus 47 k~la~lF~e~S---TRTR~SFe~A~~~LG----g~~i~l~~~~ss~~kgEsl~DTarvls~~-~D~iviR~~--~~~~~~ 116 (315)
T 1pvv_A 47 KTLAMIFQKPS---TRTRVSFEVAMAHLG----GHALYLNAQDLQLRRGETIADTARVLSRY-VDAIMARVY--DHKDVE 116 (315)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHTT----SEEEEEEGGGSTTTTTCCHHHHHHHHTTT-CSEEEEECS--SHHHHH
T ss_pred CEEEEEecCCC---cchHHHHHHHHHHcC----CeEEEECCccccCCCCcCHHHHHHHHHHh-CcEEEEecC--chHHHH
Confidence 46788886654 366778999998875 45666665554432223344444455333 344442111 223345
Q ss_pred HhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH---HHCC---CeEEEEEEEcCCCCCCcchHHH
Q 006683 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYN---WRRVAAIYEDNVYGGDSGKLAL 188 (635)
Q Consensus 115 ~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l---~~~~---w~~vaii~~~~~~g~~~~~~~~ 188 (635)
.+++..++|+|+.+.. ...| .+++++++ +++| ..+|+++.+ + ...+..
T Consensus 117 ~lA~~~~vPVINa~~~--------~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vGD----~--~rva~S 170 (315)
T 1pvv_A 117 DLAKYATVPVINGLSD--------FSHP------------CQALADYMTIWEKKGTIKGVKVVYVGD----G--NNVAHS 170 (315)
T ss_dssp HHHHHCSSCEEEEECS--------SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC----C--CHHHHH
T ss_pred HHHHhCCCCEEcCCCC--------CCCc------------HHHHHHHHHHHHHhCCcCCcEEEEECC----C--cchHHH
Confidence 5666778999985421 1223 26677765 4544 357777643 2 345777
Q ss_pred HHHHHhccCCeEEEEE
Q 006683 189 LAEALQNVSSSEIQSR 204 (635)
Q Consensus 189 ~~~~l~~~g~~~v~~~ 204 (635)
+...+...| .++...
T Consensus 171 l~~~~~~~g-~~v~~~ 185 (315)
T 1pvv_A 171 LMIAGTKLG-ADVVVA 185 (315)
T ss_dssp HHHHHHHTT-CEEEEE
T ss_pred HHHHHHHCC-CEEEEE
Confidence 888888889 776654
No 334
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=28.35 E-value=2.7e+02 Score=26.87 Aligned_cols=129 Identities=11% Similarity=0.144 Sum_probs=73.1
Q ss_pred EEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCC---CC-HHHHHHHHHHHhhcCCeEEEEcCCChhhH
Q 006683 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHN---RD-PFQAATAAQELINKEKVKVIAGMETWEET 110 (635)
Q Consensus 35 i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~---~~-~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (635)
-.|+.+|-..+. ....+|+.|+.++. |..+.+...++. +. -..+++.+..+. .++++=.+. .
T Consensus 64 k~la~lF~e~ST---RTR~SFE~A~~~LG----g~~i~l~~~~ssl~kgEsl~DTarvLs~~~---D~IviR~~~----~ 129 (339)
T 4a8t_A 64 KSLGMIFQQSST---RTRVSFETAMEQLG----GHGEYLAPGQIQLGGHETIEDTSRVLSRLV---DILMARVER----H 129 (339)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHTT----CEEEEECCC-CCSSSSSCHHHHHHHHHHHC---SEEEEECSS----H
T ss_pred ceEEEEecCCCc---hHHHHHHHHHHHcC----CeEEEeCcccccCCCCcCHHHHHHHHHHhC---CEEEEecCc----H
Confidence 467888876543 66778999998875 345555433332 22 222333333332 233333332 2
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH---HHC--C----CeEEEEEEEcCCCCC
Q 006683 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKY--N----WRRVAAIYEDNVYGG 181 (635)
Q Consensus 111 ~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l---~~~--~----w~~vaii~~~~~~g~ 181 (635)
..+..+++..++|+|+.+.. ...| .+++++++ +++ | ..+|+++.+ . +
T Consensus 130 ~~~~~lA~~~~vPVINag~~--------~~HP------------tQaLaDl~Ti~e~~~~G~~l~glkva~vGD--~-~- 185 (339)
T 4a8t_A 130 HSIVDLANCATIPVINGMSD--------YNHP------------TQELGDLCTMVEHLPEGKKLEDCKVVFVGD--A-T- 185 (339)
T ss_dssp HHHHHHHHHCSSCEEECCCS--------SCCH------------HHHHHHHHHHHHTCCTTCCGGGCEEEEESS--C-C-
T ss_pred HHHHHHHHhCCCCEEECCCC--------CcCc------------HHHHHHHHHHHHHhhcCCCCCCCEEEEECC--C-c-
Confidence 34455666778999976422 1223 36777765 566 5 247776642 2 3
Q ss_pred CcchHHHHHHHHhccCCeEEEEE
Q 006683 182 DSGKLALLAEALQNVSSSEIQSR 204 (635)
Q Consensus 182 ~~~~~~~~~~~l~~~g~~~v~~~ 204 (635)
..+..+...+...| .++...
T Consensus 186 --rva~Sl~~~~~~~G-~~v~~~ 205 (339)
T 4a8t_A 186 --QVCFSLGLITTKMG-MNFVHF 205 (339)
T ss_dssp --HHHHHHHHHHHHTT-CEEEEE
T ss_pred --hhHHHHHHHHHHcC-CEEEEE
Confidence 45777777888889 776654
No 335
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=28.33 E-value=87 Score=30.24 Aligned_cols=63 Identities=10% Similarity=0.063 Sum_probs=40.2
Q ss_pred CCeEEEEEEEcC--CCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEE
Q 006683 166 NWRRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIV 237 (635)
Q Consensus 166 ~w~~vaii~~~~--~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~ 237 (635)
.-..|+++..+- +|. ..+.+.+.+.+++.| ..+..... ... ........++.+...+.|.||+
T Consensus 60 ~~~~Igvi~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~~-~~~-----~~~~~~~~l~~l~~~~vdGiIi 124 (349)
T 1jye_A 60 QSLLIGVATSSLALHAP--SQIVAAILSRADQLG-ASVVVSMV-ERS-----GVEACKTAVHNLLAQRVSGLII 124 (349)
T ss_dssp --CEEEEEESCTTSHHH--HHHHHHHHHHHHHTT-CEEEEEEC-CSS-----SHHHHHHHHHHHHTTTCSCEEE
T ss_pred CCCEEEEEeCCCCcccH--HHHHHHHHHHHHHcC-CEEEEEeC-CCC-----cHHHHHHHHHHHHHCCCCEEEE
Confidence 345788888653 344 566788888999999 77664321 111 1123445677787788999888
No 336
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=28.28 E-value=89 Score=29.34 Aligned_cols=79 Identities=5% Similarity=-0.006 Sum_probs=49.3
Q ss_pred eEEEEEEEcC--CCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCCh-hH
Q 006683 168 RRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL-DM 244 (635)
Q Consensus 168 ~~vaii~~~~--~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~-~~ 244 (635)
.+|+++..+. .|. ..+.+.+++.+++.| ..+.... . .. + .......++.+...++|.||+ .... ..
T Consensus 3 ~~Ig~i~~~~~~~~~--~~~~~gi~~~a~~~g-~~l~~~~--~-~~---~-~~~~~~~i~~l~~~~vdgiIi-~~~~~~~ 71 (306)
T 2vk2_A 3 LTVGFSQVGSESGWR--AAETNVAKSEAEKRG-ITLKIAD--G-QQ---K-QENQIKAVRSFVAQGVDAIFI-APVVATG 71 (306)
T ss_dssp CEEEEEECCCCSHHH--HHHHHHHHHHHHHHT-CEEEEEE--C-TT---C-HHHHHHHHHHHHHHTCSEEEE-CCSSSSS
T ss_pred eEEEEEeCCCCCHHH--HHHHHHHHHHHHHcC-CEEEEeC--C-CC---C-HHHHHHHHHHHHHcCCCEEEE-eCCChhh
Confidence 4688887643 344 566777888899999 7765432 1 11 1 133456677777778999988 5433 22
Q ss_pred HHHHHHHHHHcCC
Q 006683 245 TIHLFTEANRMGL 257 (635)
Q Consensus 245 ~~~~l~~a~~~g~ 257 (635)
....++.+.+.++
T Consensus 72 ~~~~~~~~~~~~i 84 (306)
T 2vk2_A 72 WEPVLKEAKDAEI 84 (306)
T ss_dssp CHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 2345666766665
No 337
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=28.14 E-value=1.1e+02 Score=22.22 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=17.5
Q ss_pred ccchhhHhHHHHhhccC-CCCCC
Q 006683 613 QISNILWFAFSTIFFSH-SEYPL 634 (635)
Q Consensus 613 ~~~~~~w~~~~~~~~q~-~~~~~ 634 (635)
++.+++||+..++.--| |+..|
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P 50 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSP 50 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCC
T ss_pred CHHHHHHHHHHHhcccCCCCCCC
Confidence 58899999999998888 55544
No 338
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=28.13 E-value=81 Score=28.64 Aligned_cols=69 Identities=10% Similarity=0.039 Sum_probs=42.2
Q ss_pred HHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccEEEecc--cccccc--cccccccc---cceeeeeEEEEeCCC
Q 006683 493 ELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDL--TILGNR--TEYVEFTQ---PYAESGFSMIVPAKQ 565 (635)
Q Consensus 493 dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~--~~~~~r--~~~~~fs~---p~~~~~~~~~v~~~~ 565 (635)
.++.+... -|.+++++..+ .+.++.+|.+|++|.++-.. .+.... .+...+.. +...+..++++++++
T Consensus 125 ~~lt~~~~-~g~~Ve~ve~~----y~~~i~~L~~G~IDA~Iwn~d~~~a~~~~~l~~~~l~~~~~~~~~~eavI~v~k~n 199 (231)
T 2ozz_A 125 KIMTDVFF-GDSDVERVDLS----YHESLQRIVKGDVDAVIWNVVAENELTMLGLEATPLTDDPRFLQATEAVVLTRVDD 199 (231)
T ss_dssp HHHHHHHH-TTSCCEEEECC----HHHHHHHHHHTSCCEEEEEC-CHHHHHHTTEEEEECCSCHHHHHTTCEEEEEETTC
T ss_pred HHHHhhhc-CCCeEEEEECC----HHHHHHHHHcCCccEEEEcCcchhhhcCCCcceeccccccccccCCceEEEEECCC
Confidence 34444444 67775555444 88999999999999998733 222111 23344444 334566677788875
Q ss_pred C
Q 006683 566 E 566 (635)
Q Consensus 566 ~ 566 (635)
.
T Consensus 200 ~ 200 (231)
T 2ozz_A 200 Y 200 (231)
T ss_dssp H
T ss_pred H
Confidence 3
No 339
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=27.89 E-value=47 Score=31.18 Aligned_cols=81 Identities=10% Similarity=-0.012 Sum_probs=51.1
Q ss_pred eEEEEEEEcC--CCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHH
Q 006683 168 RRVAAIYEDN--VYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (635)
Q Consensus 168 ~~vaii~~~~--~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~ 245 (635)
.+|+++..+. +|. ..+.+.+.+.+++.| ..+..... ... .+ .......++.+.+.++|.||+........
T Consensus 6 ~~Igvi~~~~~~~~~--~~~~~g~~~~a~~~g-~~~~~~~~--~~~--~~-~~~~~~~~~~~~~~~vdgiii~~~~~~~~ 77 (304)
T 3o1i_D 6 EKICAIYPHLKDSYW--LSVNYGMVSEAEKQG-VNLRVLEA--GGY--PN-KSRQEQQLALCTQWGANAIILGTVDPHAY 77 (304)
T ss_dssp CEEEEEESCSCSHHH--HHHHHHHHHHHHHHT-CEEEEEEC--SST--TC-HHHHHHHHHHHHHHTCSEEEECCSSTTSS
T ss_pred cEEEEEeCCCCCcHH--HHHHHHHHHHHHHcC-CeEEEEcC--CCC--CC-HHHHHHHHHHHHHcCCCEEEEeCCChhHH
Confidence 5788888653 355 667788899999999 77765432 110 01 13455677888888999999833333323
Q ss_pred HHHHHHHHHcCC
Q 006683 246 IHLFTEANRMGL 257 (635)
Q Consensus 246 ~~~l~~a~~~g~ 257 (635)
...++.+. .|+
T Consensus 78 ~~~~~~~~-~~i 88 (304)
T 3o1i_D 78 EHNLKSWV-GNT 88 (304)
T ss_dssp TTTHHHHT-TTS
T ss_pred HHHHHHHc-CCC
Confidence 44566665 554
No 340
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=27.63 E-value=1.2e+02 Score=28.40 Aligned_cols=72 Identities=11% Similarity=0.009 Sum_probs=47.0
Q ss_pred ceeHHHHHHHHHHC-CCcccEEEecCCCChhhHHHHHHcCcccEEEecccccccccccccccccceeeeeEEEEeCCCC
Q 006683 489 GFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (635)
Q Consensus 489 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (635)
.+-..++..+.++. +.++++... ..+.++..|.+|++|+++....... ....+ -+.+.....++++++++.+
T Consensus 105 ~~l~~~l~~f~~~~P~i~i~l~~~----~~~~~~~~l~~g~~Dlai~~~~~~~-~~~~l-~~~~L~~~~~~~v~~~~hp 177 (305)
T 3fxq_A 105 AALPLALASFAREFPDVTVNVRDG----MYPAVSPQLRDGTLDFALTAAHKHD-IDTDL-EAQPLYVSDVVIVGQRQHP 177 (305)
T ss_dssp THHHHHHHHHHHHCTTCEEEEEEC----CTTTTHHHHHHTSSSEEEEECCGGG-SCTTE-EEEEEEECCEEEEEETTCT
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEC----CHHHHHHHHHcCCCCEEEecCCCCC-CccCe-eEEEeecCcEEEEEcCCCC
Confidence 34567888887776 566444432 2456899999999999986543221 01112 2357778888999887754
No 341
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=27.58 E-value=67 Score=28.81 Aligned_cols=42 Identities=17% Similarity=0.364 Sum_probs=33.1
Q ss_pred HHHHHHHHHH-C-CCcccEEEecCCCChhhHHHHHHcCcccEEEeccc
Q 006683 492 IELFRLVVDH-L-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLT 537 (635)
Q Consensus 492 ~dl~~~la~~-l-~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~ 537 (635)
.++++.-.++ + |++++++.++ |......+..|+.||++.+..
T Consensus 115 a~~i~~~l~~~i~GI~v~i~~~~----~~~~~~~~~~g~~d~~~~~w~ 158 (229)
T 3o6p_A 115 VEFVQGSIQDALDGVKVTVSPVP----FSVRLDRSNKGDFDAVIGGWS 158 (229)
T ss_dssp HHHHHHHHHHHSTTEEEEEEEEC----HHHHHHHHHHTCCSEEEEEEE
T ss_pred HHHHHHHHHHhCCCcEEEEEecC----HHHHHHHhhcCCceEEEeccc
Confidence 4566666666 9 9998888777 888888899999999886543
No 342
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=27.43 E-value=80 Score=29.59 Aligned_cols=70 Identities=10% Similarity=0.108 Sum_probs=45.2
Q ss_pred ceeHHHHHHHHHHC-CCcccEEEecCCCChhhHHHHHHcCcccEEEec---ccccccccccccccccceeeeeEEEEeCC
Q 006683 489 GFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGD---LTILGNRTEYVEFTQPYAESGFSMIVPAK 564 (635)
Q Consensus 489 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~---~~~~~~r~~~~~fs~p~~~~~~~~~v~~~ 564 (635)
.+-.+++..+.++. +.+ +.+... +...++..|.+|++|+++.. .... ...+. +.++....++++++++
T Consensus 114 ~~l~~~l~~f~~~~P~i~--i~l~~~--~~~~~~~~l~~g~~Dl~i~~~~~~~~~---~~~l~-~~~l~~~~~~~v~~~~ 185 (310)
T 2esn_A 114 ALLPPLMNRLQHSAPGVR--LRLVNA--ERKLSVEALASGRIDFALGYDEEHERL---PEGIQ-AHDWFADRYVVVARRD 185 (310)
T ss_dssp HHHHHHHHHHHHHSTTCE--EEEECC--SSSCCHHHHHHTSSSEEEECCSTTCCC---CTTEE-EEEEEEECEEEEEESS
T ss_pred HHHHHHHHHHHHHCCCeE--EEEEeC--CcccHHHHHHcCCCCEEEecCcccccC---CcCcc-eeeeeccceEEEEeCC
Confidence 34567778887776 455 444442 24468889999999999865 2221 12222 3477788889998876
Q ss_pred CC
Q 006683 565 QE 566 (635)
Q Consensus 565 ~~ 566 (635)
.+
T Consensus 186 ~p 187 (310)
T 2esn_A 186 HP 187 (310)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 343
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=27.26 E-value=1.7e+02 Score=24.82 Aligned_cols=66 Identities=14% Similarity=0.218 Sum_probs=40.3
Q ss_pred eEEEEEEEcCC--CCCC-cchHHHHHHHHhcc-----CCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhh-cCceEEEEe
Q 006683 168 RRVAAIYEDNV--YGGD-SGKLALLAEALQNV-----SSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQSRVFIVL 238 (635)
Q Consensus 168 ~~vaii~~~~~--~g~~-~~~~~~~~~~l~~~-----g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~-~~~~vii~~ 238 (635)
-++++|...|. .|.. ......+.+.+++. | .++.....++.+. ..+.+.+++..+ .++|+||.
T Consensus 6 ~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G-~~v~~~~iv~Dd~------~~i~~~l~~~~~~~~~DlVit- 77 (167)
T 1uuy_A 6 YKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGG-AKVVATAVVPDEV------ERIKDILQKWSDVDEMDLILT- 77 (167)
T ss_dssp EEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTS-EEEEEEEEECSCH------HHHHHHHHHHHHTSCCSEEEE-
T ss_pred cEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCC-cEEeEEEEcCCCH------HHHHHHHHHHHhcCCCCEEEE-
Confidence 46777776542 1200 11123455666666 8 8887766665443 667777877764 47899998
Q ss_pred cCC
Q 006683 239 QAS 241 (635)
Q Consensus 239 ~~~ 241 (635)
.+.
T Consensus 78 tGG 80 (167)
T 1uuy_A 78 LGG 80 (167)
T ss_dssp ESC
T ss_pred CCC
Confidence 554
No 344
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=27.11 E-value=4.1e+02 Score=25.22 Aligned_cols=118 Identities=13% Similarity=0.092 Sum_probs=69.0
Q ss_pred EEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHHHH
Q 006683 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVV 113 (635)
Q Consensus 35 i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v 113 (635)
=+||++.... ......-..|++.|+++.+-+ .+++ .....+...+.+.+.+++....+ +|+. .+...+..+
T Consensus 185 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~-----~~~v-~~~~~~~~~~~~~~~~ll~~~~~-ai~~-~nD~~A~g~ 256 (348)
T 3bil_A 185 LPIGYLSGPMDTSTGRERLEDFKAACANSKIG-----EQLV-FLGGYEQSVGFEGATKLLDQGAK-TLFA-GDSMMTIGV 256 (348)
T ss_dssp CSEEEECCCTTSHHHHHHHHHHHHHHHHTTCC-----CCEE-ECCCSSHHHHHHHHHHHHHTTCS-EEEE-SSHHHHHHH
T ss_pred CeEEEEeCCCCCccHHHHHHHHHHHHHHcCcC-----ccEE-EcCCCCHHHHHHHHHHHHcCCCC-EEEE-cChHHHHHH
Confidence 3677776543 223345567888888876531 1222 23345677778888888854447 8886 444445555
Q ss_pred HHhhccCC--cc----EEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHHHH
Q 006683 114 AEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLARK 164 (635)
Q Consensus 114 ~~~~~~~~--ip----~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l~~ 164 (635)
...+...+ || ++++... .+.....|.+-.+..+...++...+++|..
T Consensus 257 ~~al~~~G~~vP~disvvG~D~~----~~~~~~~p~lttv~~~~~~~g~~Av~~l~~ 309 (348)
T 3bil_A 257 IEACHKAGLVIGKDVSVIGFDTH----PLFALQPHPLTVIDQNVEQLAQRAVSILTE 309 (348)
T ss_dssp HHHHHHTTCCBTTTBEEEEESCC----GGGGGSSSCCCEEECCHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCCCCeEEEEeCCc----HHHHhcCCCceEEEcCHHHHHHHHHHHHHH
Confidence 55555543 33 6766544 223222344555667777888888887643
No 345
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=26.98 E-value=93 Score=29.35 Aligned_cols=69 Identities=12% Similarity=0.085 Sum_probs=45.0
Q ss_pred eeHHHHHHHHHHC-CCcccEEEecCCCChhhHHHHHHcCcccEEEecccccccccccccccccceeeeeEEEEeCCCC
Q 006683 490 FSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (635)
Q Consensus 490 ~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (635)
+-..++..+.++. +.+ +.+.. ++...++..|.+|++|+++...... ...+. +.|.....++++++++.+
T Consensus 119 ~l~~~l~~f~~~~P~v~--l~l~~--~~~~~~~~~l~~g~~Dl~i~~~~~~---~~~l~-~~~l~~~~~~~v~~~~hp 188 (315)
T 1uth_A 119 FMPPLMEALAQRAPHIQ--ISTLR--PNAGNLKEDMESGAVDLALGLLPEL---QTGFF-QRRLFRHRYVCMFRKDHP 188 (315)
T ss_dssp HHHHHHHHHHHHCTTCE--EEEEC--TTSSCHHHHHHHTSCCEEEECCTTC---CTTEE-EEEEEEECEEEEEETTCS
T ss_pred HHHHHHHHHHHHCCCcE--EEEEe--CCcccHHHHHHCCCCCEEEecCCCC---CCCce-EEEeeccceEEEEeCCCC
Confidence 4467777777776 555 44443 2245689999999999998643221 12222 357778888888887654
No 346
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=26.85 E-value=1.7e+02 Score=25.53 Aligned_cols=69 Identities=14% Similarity=0.153 Sum_probs=43.5
Q ss_pred CCCeEEEEEEEcCC--CCCC-cchHHHHHHHHhc---cCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhh-cCceEEEE
Q 006683 165 YNWRRVAAIYEDNV--YGGD-SGKLALLAEALQN---VSSSEIQSRLVLPPISSISDPKEAVRGELKKVQD-KQSRVFIV 237 (635)
Q Consensus 165 ~~w~~vaii~~~~~--~g~~-~~~~~~~~~~l~~---~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~-~~~~vii~ 237 (635)
+.--+++||...|. .|.. ......+.+.+++ .| ..+.....++.+. ..+.+.+++..+ .++|+||.
T Consensus 12 ~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G-~~v~~~~iv~Dd~------~~I~~al~~a~~~~~~DlVIt 84 (189)
T 1jlj_A 12 DHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLG-GTISAYKIVPDEI------EEIKETLIDWCDEKELNLILT 84 (189)
T ss_dssp -CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTC-CEEEEEEEECSCH------HHHHHHHHHHHHTSCCSEEEE
T ss_pred cCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCC-cEEEEEEEeCCCH------HHHHHHHHHHhhcCCCCEEEE
Confidence 33347787776553 1200 2334567778887 78 8888776665543 667777777654 37899998
Q ss_pred ecCC
Q 006683 238 LQAS 241 (635)
Q Consensus 238 ~~~~ 241 (635)
.+.
T Consensus 85 -tGG 87 (189)
T 1jlj_A 85 -TGG 87 (189)
T ss_dssp -ESC
T ss_pred -cCC
Confidence 554
No 347
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=26.82 E-value=73 Score=30.20 Aligned_cols=78 Identities=10% Similarity=0.066 Sum_probs=46.4
Q ss_pred HHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccEEEecccccc----c----ccccccccccceeeeeEEEEeCC
Q 006683 493 ELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILG----N----RTEYVEFTQPYAESGFSMIVPAK 564 (635)
Q Consensus 493 dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~----~----r~~~~~fs~p~~~~~~~~~v~~~ 564 (635)
.+++.+-+..|++++++ + ++-..+...|.+|++|+.......+. + ..+...+..-+....+.++||+.
T Consensus 24 ~i~~~~Le~~G~~Ve~~--~--~~~~~~~~Al~~G~iD~~~~~w~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~V~~~ 99 (298)
T 2rin_A 24 ATATTILEALGYETDVK--V--LSVPVTYTSLKNKDIDVFLGNWMPTMEADIAPYREDKSVETVRENLAGAKYTLATNAK 99 (298)
T ss_dssp HHHHHHHHHHTCEEEEE--C--CCHHHHHHHHHHTSCCEEEEEEETTTHHHHHHHHTTTSEEEEEEEEEEEEEEEEEEHH
T ss_pred HHHHHHHHHcCCceEEE--E--CCcHHHHHHHHcCCcEEEhhhccCchHHHHHHHhhCCCEEEeccCCCCCeEEEEEchh
Confidence 45555556679986554 3 23566888999999999875433221 1 12233333323456788999886
Q ss_pred C---CCCcceeec
Q 006683 565 Q---EESTWMFTK 574 (635)
Q Consensus 565 ~---~~~~~~~l~ 574 (635)
. ..+..+.|+
T Consensus 100 ~ae~~I~si~DLk 112 (298)
T 2rin_A 100 GAELGIKDFKDIA 112 (298)
T ss_dssp HHHHTCCBGGGSG
T ss_pred HHhcCCCCHHHHH
Confidence 4 444455554
No 348
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=26.48 E-value=1.7e+02 Score=29.02 Aligned_cols=90 Identities=13% Similarity=0.068 Sum_probs=55.8
Q ss_pred ceEEEEecCcHHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHH
Q 006683 142 PYLIRMASNDSEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVR 221 (635)
Q Consensus 142 p~~~r~~p~~~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~ 221 (635)
||-+...+...... . +++.++.+++.+|++...+ ....+.+.+.+++.| +.+... .++...... ....+.
T Consensus 41 ~y~I~~G~g~l~~l---~-~l~~~~~~rvlIVtd~~v~---~~~~~~v~~~L~~~g-~~~~~~-~~~~gE~~k-t~~~v~ 110 (390)
T 3okf_A 41 SYPISIGAGLFANP---A-LLSLSAKQKVVIVTNHTVA---PLYAPAIISLLDHIG-CQHALL-ELPDGEQYK-TLETFN 110 (390)
T ss_dssp CEEEEEETTGGGCG---G-GGCCCTTCEEEEEEETTTH---HHHHHHHHHHHHHHT-CEEEEE-EECSSGGGC-BHHHHH
T ss_pred CCCEEEeCCHHHhH---H-HHHhcCCCEEEEEECCcHH---HHHHHHHHHHHHHcC-CeEEEE-EECCCcCCc-hHHHHH
Confidence 55555566543322 2 4455577899999988765 346788889999989 776533 244433111 125677
Q ss_pred HHHHhhhhcCc---eEEEEecCCh
Q 006683 222 GELKKVQDKQS---RVFIVLQASL 242 (635)
Q Consensus 222 ~~l~~l~~~~~---~vii~~~~~~ 242 (635)
+.++.+++.++ ++||. .+.+
T Consensus 111 ~~~~~l~~~~~~R~d~IIA-vGGG 133 (390)
T 3okf_A 111 TVMSFLLEHNYSRDVVVIA-LGGG 133 (390)
T ss_dssp HHHHHHHHTTCCTTCEEEE-EESH
T ss_pred HHHHHHHhcCCCcCcEEEE-ECCc
Confidence 77888887766 57776 4443
No 349
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=26.43 E-value=1.1e+02 Score=25.09 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=17.9
Q ss_pred ccchhhHhHHHHhhccC-CCCCC
Q 006683 613 QISNILWFAFSTIFFSH-SEYPL 634 (635)
Q Consensus 613 ~~~~~~w~~~~~~~~q~-~~~~~ 634 (635)
++.+++||++.++..-| |+..|
T Consensus 43 ~~~~a~y~~~~T~tTvGyGDi~P 65 (137)
T 4h33_A 43 NYPDALWWAIVTATTVGYGDIVP 65 (137)
T ss_dssp SHHHHHHHHHHHHTTCCCSSSCC
T ss_pred CHHHHHHHHHHHHHcccCCCCCC
Confidence 58899999999998888 55554
No 350
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=26.21 E-value=1.4e+02 Score=28.39 Aligned_cols=46 Identities=11% Similarity=0.153 Sum_probs=35.8
Q ss_pred HHHHHHHHHHCCCcccEEEecCC--CChhhHHHHHHcCcccEEEeccc
Q 006683 492 IELFRLVVDHLNYDLPYEFVPHD--GVYDDLINGVYDKTYDAAVGDLT 537 (635)
Q Consensus 492 ~dl~~~la~~l~~~~~~~~~~~~--~~~~~~~~~l~~g~~D~~~~~~~ 537 (635)
-.+.+++.++.|=++++.+.+.. |.-..++..+..|.+||+.....
T Consensus 22 ~~fa~~v~e~s~G~i~i~v~~~g~Lg~~~~~~e~v~~G~id~~~~~~~ 69 (312)
T 2xwv_A 22 EMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSLDFTFAESA 69 (312)
T ss_dssp HHHHHHHHHHTTTSEEEEEECTTTTCCHHHHHHHHHHTSCCEEEECGG
T ss_pred HHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHCCCceEEEeCch
Confidence 35678888888888888877742 34678999999999999876554
No 351
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae}
Probab=26.04 E-value=74 Score=31.82 Aligned_cols=50 Identities=14% Similarity=0.140 Sum_probs=27.7
Q ss_pred HHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEc
Q 006683 52 ITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG 103 (635)
Q Consensus 52 ~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG 103 (635)
...++..+++.|+..|+++|+++......+-..-+.. .+...+.++++..
T Consensus 56 ~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~~kl~~--~~a~g~~pDv~~~ 105 (430)
T 2w7y_A 56 AKTMRDLYDKFAEEHKDSGVEFKPTPVNGDLKDIMNN--KVASGEFPDVIDL 105 (430)
T ss_dssp HHHHHHHHHHHHHHC--CCSEEEEEECSSCHHHHHHH--HHTTTCCCSEEEC
T ss_pred HHHHHHHHHHHHHHCCCceEEEEeCCCCccHHHHHHH--HHhCCCCCcEEEe
Confidence 4567788899998888888887766543232222221 2222345566654
No 352
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=26.00 E-value=3.3e+02 Score=26.04 Aligned_cols=133 Identities=13% Similarity=0.159 Sum_probs=72.9
Q ss_pred EEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHHHHH
Q 006683 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (635)
Q Consensus 35 i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (635)
-.|+.+|-..+ .....+|+.|+.++. |..+.+...++.-.-.+.+....+.++.- +++|+-=... ...+.
T Consensus 49 k~la~lF~e~S---TRTR~SFE~A~~~LG----g~~i~l~~~~ss~~kgEsl~DTarvLs~~-~D~iviR~~~--~~~~~ 118 (323)
T 3gd5_A 49 KVLGLVFLKAS---TRTRVSFTVAMYQLG----GQVIDLSPSNTQVGRGEPVRDTARVLGRY-VDGLAIRTFA--QTELE 118 (323)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHTT----CEEEEC----------CCHHHHHHHHTTT-CSEEEEECSS--HHHHH
T ss_pred CEEEEEecCCC---cchHhhHHHHHHHcC----CeEEEeCcccccCCCCCCHHHHHHHHHHh-CCEEEEecCC--hhHHH
Confidence 36788887764 467789999998875 34455544443322223344444455333 5555421111 23344
Q ss_pred HhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH---HHC---CCeEEEEEEEcCCCCCCcchHHH
Q 006683 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKY---NWRRVAAIYEDNVYGGDSGKLAL 188 (635)
Q Consensus 115 ~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l---~~~---~w~~vaii~~~~~~g~~~~~~~~ 188 (635)
.+++..++|+|+.+.. ...| .+++++++ +++ ...+|+++.+- + ..+..
T Consensus 119 ~lA~~~~vPVINag~~--------~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vGD~---~---rva~S 172 (323)
T 3gd5_A 119 EYAHYAGIPVINALTD--------HEHP------------CQVVADLLTIRENFGRLAGLKLAYVGDG---N---NVAHS 172 (323)
T ss_dssp HHHHHHCSCEEEEECS--------SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESCC---C---HHHHH
T ss_pred HHHHhCCCCEEeCCCC--------CCCc------------HHHHHHHHHHHHHhCCCCCCEEEEECCC---C---cHHHH
Confidence 5566678999986622 1223 36677765 444 45688877432 3 44666
Q ss_pred HHHHHhccCCeEEEEE
Q 006683 189 LAEALQNVSSSEIQSR 204 (635)
Q Consensus 189 ~~~~l~~~g~~~v~~~ 204 (635)
+...+...| .++...
T Consensus 173 l~~~~~~~G-~~v~~~ 187 (323)
T 3gd5_A 173 LLLGCAKVG-MSIAVA 187 (323)
T ss_dssp HHHHHHHHT-CEEEEE
T ss_pred HHHHHHHcC-CEEEEE
Confidence 777778888 776644
No 353
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=25.84 E-value=2.5e+02 Score=27.06 Aligned_cols=129 Identities=19% Similarity=0.249 Sum_probs=72.7
Q ss_pred EEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCC---CCH-HHHHHHHHHHhhcCCeEEEEcCCChhhH
Q 006683 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHN---RDP-FQAATAAQELINKEKVKVIAGMETWEET 110 (635)
Q Consensus 35 i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~---~~~-~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (635)
-.|+.+|-..+ .....+|+.|+.++.. ..+.+...++. +.+ ..+++.+..+. .++++=.+. .
T Consensus 71 K~la~lF~epS---TRTR~SFE~A~~~LGg----~vi~l~~~~ss~~kgEsl~DTarvLs~y~---D~IviR~~~----~ 136 (340)
T 4ep1_A 71 KILGLIFDKHS---TRTRVSFEAGMVQLGG----HGMFLNGKEMQMGRGETVSDTAKVLSHYI---DGIMIRTFS----H 136 (340)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHTTC----EEEEEESCC------CCTTHHHHHHHHHC---SEEEEECSC----H
T ss_pred ceEEEEecCCC---ccHHHHHHHHHHHcCC----eEEEcCcccccCCCCCCHHHHHHHHHHhC---CEEEEecCC----h
Confidence 36788887654 4667899999988753 34555433332 111 22233333331 233333332 2
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH---HHCC---CeEEEEEEEcCCCCCCcc
Q 006683 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYN---WRRVAAIYEDNVYGGDSG 184 (635)
Q Consensus 111 ~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l---~~~~---w~~vaii~~~~~~g~~~~ 184 (635)
..+..+++..++|+|+.+.. ...| .+++++++ +++| ..+|+++.+ + ..
T Consensus 137 ~~~~~lA~~~~vPVINag~~--------~~HP------------tQaLaDl~TI~E~~G~l~glkva~vGD----~--~n 190 (340)
T 4ep1_A 137 ADVEELAKESSIPVINGLTD--------DHHP------------CQALADLMTIYEETNTFKGIKLAYVGD----G--NN 190 (340)
T ss_dssp HHHHHHHHHCSSCEEEEECS--------SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC----C--CH
T ss_pred hHHHHHHHhCCCCEEeCCCC--------CCCc------------HHHHHHHHHHHHHhCCCCCCEEEEECC----C--ch
Confidence 34555667778999986522 1223 26677765 4544 568888742 2 34
Q ss_pred hHHHHHHHHhccCCeEEEEE
Q 006683 185 KLALLAEALQNVSSSEIQSR 204 (635)
Q Consensus 185 ~~~~~~~~l~~~g~~~v~~~ 204 (635)
.+..+...+...| .++...
T Consensus 191 va~Sl~~~~~~~G-~~v~~~ 209 (340)
T 4ep1_A 191 VCHSLLLASAKVG-MHMTVA 209 (340)
T ss_dssp HHHHHHHHHHHHT-CEEEEE
T ss_pred hHHHHHHHHHHcC-CEEEEE
Confidence 6777888888888 776654
No 354
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=25.67 E-value=3.5e+02 Score=25.12 Aligned_cols=87 Identities=11% Similarity=0.075 Sum_probs=57.8
Q ss_pred HHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEE
Q 006683 156 KCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVF 235 (635)
Q Consensus 156 ~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vi 235 (635)
..++......|-.-+.++.+..-++ +..+.+++.-+..+ +.|.... |-.+. + ++...+..++|.|
T Consensus 82 ~~~A~~y~~~GA~~IsVltd~~~f~---Gs~~~L~~ir~~v~-lPVl~Kd-fi~d~--------~--qi~ea~~~GAD~V 146 (272)
T 3tsm_A 82 PALAKAYEEGGAACLSVLTDTPSFQ---GAPEFLTAARQACS-LPALRKD-FLFDP--------Y--QVYEARSWGADCI 146 (272)
T ss_dssp HHHHHHHHHTTCSEEEEECCSTTTC---CCHHHHHHHHHTSS-SCEEEES-CCCST--------H--HHHHHHHTTCSEE
T ss_pred HHHHHHHHHCCCCEEEEeccccccC---CCHHHHHHHHHhcC-CCEEECC-ccCCH--------H--HHHHHHHcCCCEE
Confidence 4566667778999999888666553 33555655545556 6665332 21111 2 5667788899999
Q ss_pred EEecC---ChhHHHHHHHHHHHcCCC
Q 006683 236 IVLQA---SLDMTIHLFTEANRMGLV 258 (635)
Q Consensus 236 i~~~~---~~~~~~~~l~~a~~~g~~ 258 (635)
++ .. ...++..++..+.++||.
T Consensus 147 lL-i~a~L~~~~l~~l~~~a~~lGl~ 171 (272)
T 3tsm_A 147 LI-IMASVDDDLAKELEDTAFALGMD 171 (272)
T ss_dssp EE-ETTTSCHHHHHHHHHHHHHTTCE
T ss_pred EE-cccccCHHHHHHHHHHHHHcCCe
Confidence 88 54 245688899999999874
No 355
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, mycoba tuberculosis, ION-dipole interactions; 2.16A {Mycobacterium tuberculosis} SCOP: c.94.1.1
Probab=25.43 E-value=57 Score=31.87 Aligned_cols=70 Identities=9% Similarity=-0.159 Sum_probs=45.3
Q ss_pred HHHHHHHHHHC-CCcccEEEecCCCChhhHHHHHHcCcccEEEecccccccccccc--cccccceeeeeEEEEeCCC
Q 006683 492 IELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYV--EFTQPYAESGFSMIVPAKQ 565 (635)
Q Consensus 492 ~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~--~fs~p~~~~~~~~~v~~~~ 565 (635)
-++++.+.++. +.+ +.+.. . .-.+.+.++.+|++|+++....+..+..+.. -...|+...+++++++.+.
T Consensus 42 ~~~~~~f~~~~p~v~--i~v~~-~-gS~~g~~~l~~g~~Di~~~~~~~~~~e~~~~~~l~~~pi~~d~lvvvvn~~~ 114 (350)
T 1pc3_A 42 NLWGPAFHERYPNVT--ITAQG-T-GSGAGIAQAAAGTVNIGASDAYLSEGDMAAHKGLMNIALAISAQQVNYNLPG 114 (350)
T ss_dssp HHHHHHHHHHSTTEE--EECCB-C-CHHHHHHHHHTTSCSEEEESSCCCHHHHHHSTTEEEEEEEEEEEEEEECCTT
T ss_pred HHHHHHHHHHCCCce--EEEec-C-CCHHHHHHHHcCCCcEEeccCCCCHHHHHhcCCCEEeeEEeeeEEEEEeCCc
Confidence 34555555543 444 33322 2 3567899999999999988777665542210 1346889999999998765
No 356
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=25.38 E-value=1.6e+02 Score=27.15 Aligned_cols=119 Identities=14% Similarity=0.133 Sum_probs=65.3
Q ss_pred EEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEe-cCCC----CHHHHHHHHHHHhhcCCeEEEEcCCChh
Q 006683 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIR-DHNR----DPFQAATAAQELINKEKVKVIAGMETWE 108 (635)
Q Consensus 35 i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~-D~~~----~~~~a~~~~~~li~~~~v~aiiG~~~s~ 108 (635)
=+||++.... ......-..|++.++++.+-... -+++.. .... +...+.+.+.+++.. ++.+|+.. +..
T Consensus 123 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ai~~~-~d~ 197 (288)
T 2qu7_A 123 KEVGLLLANPNISTTIGRKNGYNKAISEFDLNVN---PSLIHYSDQQLGTNAQIYSGYEATKTLLSK-GIKGIVAT-NHL 197 (288)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCC---GGGEEECCSSCSHHHHHHHHHHHHHHHHHT-TCCEEEEC-SHH
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCC---cceEEeccCCccccCCHHHHHHHHHHHHhc-CCCEEEEC-CcH
Confidence 3677776543 22334556788888877542211 011110 3333 556677778888855 88899974 344
Q ss_pred hHHHHHHhhccCC--cc----EEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH
Q 006683 109 ETAVVAEIASRVQ--VP----ILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA 162 (635)
Q Consensus 109 ~~~~v~~~~~~~~--ip----~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l 162 (635)
.+..+...+...+ +| ++++... .......|.+-.+..+...++...+++|
T Consensus 198 ~a~g~~~al~~~g~~vP~di~vvg~d~~----~~~~~~~p~lttv~~~~~~~g~~a~~~l 253 (288)
T 2qu7_A 198 LLLGALQAIKESEKEIKKDVIIVGFDDS----YWNEIYTPKLTVISQPVKEMGQVAAKMI 253 (288)
T ss_dssp HHHHHHHHHHHSSCCBTTTBEEEEESCC----THHHHSSSCCCEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCceEEEEeCCh----HHHhhcCCCccEEecCHHHHHHHHHHHH
Confidence 4555555555443 33 7776544 1222112434455566667777777765
No 357
>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}
Probab=25.35 E-value=3.8e+02 Score=25.97 Aligned_cols=132 Identities=16% Similarity=0.168 Sum_probs=73.2
Q ss_pred EEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcC-CeEEEEcCCChhhHHHH
Q 006683 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKE-KVKVIAGMETWEETAVV 113 (635)
Q Consensus 35 i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~-~v~aiiG~~~s~~~~~v 113 (635)
-.|+.+|-..+ .....+|+.|+.++.. ..+.+...+..-.-.+.+.-..+-++.- .++++=.+. .. .+
T Consensus 67 k~va~lF~e~S---TRTR~SFE~A~~~LGg----~~i~l~~~~s~l~kgEsl~DTarvLs~~~D~IviR~~~-~~---~~ 135 (353)
T 3sds_A 67 KTVAMMFSKRS---TRTRVSTEGAVVKMGG----HPMFLGKDDIQLGVNESLYDTSVVISSMVSCIVARVGP-HS---DI 135 (353)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHTTC----EEEEECTTTC--CCSSCHHHHHHHHHTSCSEEEEECSS-HH---HH
T ss_pred CEEEEEecCCc---hhHHHHHHHHHHHcCC----eEEecCCccccccCCccHHHHHHHHHHhcCEEEEEeCC-hH---HH
Confidence 46888888765 4667899999988764 3444422232211112233333333222 223333322 22 34
Q ss_pred HHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH---HHCCC----------------eEEEEEE
Q 006683 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYNW----------------RRVAAIY 174 (635)
Q Consensus 114 ~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l---~~~~w----------------~~vaii~ 174 (635)
..+++..++|+|+.+.. ...| .+++++++ +++|. .+|+++.
T Consensus 136 ~~lA~~s~vPVINag~d--------~~HP------------tQaLaDl~TI~E~~G~~~~~~~~~~~~~~l~glkva~vG 195 (353)
T 3sds_A 136 ANLAKHSSVPVINALCD--------TFHP------------LQAIADFLTIHESFASQSATHGTHPSSLGLEGLKIAWVG 195 (353)
T ss_dssp HHHHHHCSSCEEEEECS--------SCCH------------HHHHHHHHHHHHHTC--------CTTCCSCTTCEEEEES
T ss_pred HHHHhhCCCCEEECCCC--------CCCc------------HHHHHHHHHHHHHhCCCcccccccccccccCCCEEEEEC
Confidence 56667789999987622 1122 26677765 56653 4677664
Q ss_pred EcCCCCCCcchHHHHHHHHhccCCeEEEEE
Q 006683 175 EDNVYGGDSGKLALLAEALQNVSSSEIQSR 204 (635)
Q Consensus 175 ~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~ 204 (635)
+ + ...+..+...+...| .++...
T Consensus 196 D----~--~nva~Sl~~~l~~lG-~~v~~~ 218 (353)
T 3sds_A 196 D----A--NNVLFDLAIAATKMG-VNVAVA 218 (353)
T ss_dssp C----C--CHHHHHHHHHHHHTT-CEEEEE
T ss_pred C----C--chHHHHHHHHHHHcC-CEEEEE
Confidence 2 2 346777888888888 776654
No 358
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=25.25 E-value=4.4e+02 Score=24.88 Aligned_cols=132 Identities=17% Similarity=0.240 Sum_probs=77.5
Q ss_pred EEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEc-CCChhhHHHH
Q 006683 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAG-METWEETAVV 113 (635)
Q Consensus 35 i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG-~~~s~~~~~v 113 (635)
-.|+.+|-..+ .....+|+.|+.++. |..+.+...++.-.-.+.+.-..+.++.- +++|+- ... ...+
T Consensus 46 k~~~~lF~e~S---TRTR~SFe~A~~~LG----g~~i~l~~~~ss~~kgEsl~DTarvls~~-~D~iviR~~~---~~~~ 114 (301)
T 2ef0_A 46 KVLALLFEKPS---LRTRTTLEVAMVHLG----GHAVYLDQKQVGIGEREPVRDVAKNLERF-VEGIAARVFR---HETV 114 (301)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHTT----CEEEEEEGGGSCTTTCCCHHHHHHHHTTT-CSEEEEECSS---HHHH
T ss_pred CEEEEEeccCC---cchHHHHHHHHHHcC----CeEEEECCcccccCCCCchHHHHHHHHHh-CCEEEEecCC---hHHH
Confidence 46788887654 467789999998876 44566655554322223344444455333 344432 222 2334
Q ss_pred HHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH---HHCC---CeEEEEEEEcCCCCCCcchHH
Q 006683 114 AEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYN---WRRVAAIYEDNVYGGDSGKLA 187 (635)
Q Consensus 114 ~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l---~~~~---w~~vaii~~~~~~g~~~~~~~ 187 (635)
..+++..++|+|+.+.. ...| .+++++++ +++| ..+|+++.+- ...+.
T Consensus 115 ~~la~~~~vPVINa~~~--------~~HP------------tQaLaDl~Ti~e~~g~l~gl~ia~vGD~------~rva~ 168 (301)
T 2ef0_A 115 EALARHAKVPVVNALSD--------RAHP------------LQALADLLTLKEVFGGLAGLEVAWVGDG------NNVLN 168 (301)
T ss_dssp HHHHHHCSSCEEEEECS--------SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESCC------CHHHH
T ss_pred HHHHHHCCCCEEeCCCC--------ccCc------------hHHHHHHHHHHHHhCCcCCcEEEEECCC------chhHH
Confidence 55566678999985422 1223 36777765 4544 4577776542 34577
Q ss_pred HHHHHHhccCCeEEEEE
Q 006683 188 LLAEALQNVSSSEIQSR 204 (635)
Q Consensus 188 ~~~~~l~~~g~~~v~~~ 204 (635)
.+...+...| .++...
T Consensus 169 Sl~~~~~~~g-~~v~~~ 184 (301)
T 2ef0_A 169 SLLEVAPLAG-LKVRVA 184 (301)
T ss_dssp HHHHHHHHHT-CEEEEE
T ss_pred HHHHHHHHcC-CEEEEE
Confidence 7888888889 777654
No 359
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=25.19 E-value=1e+02 Score=28.59 Aligned_cols=82 Identities=10% Similarity=0.033 Sum_probs=49.3
Q ss_pred HHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccEEEe-------cccccc-----------c--cc-----cccc
Q 006683 493 ELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVG-------DLTILG-----------N--RT-----EYVE 547 (635)
Q Consensus 493 dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~-------~~~~~~-----------~--r~-----~~~~ 547 (635)
.+++.+-+..|++ ++..+.-++...++..|.+|++|+... .+.... + +. ..+.
T Consensus 23 ~~~~~~le~~G~~--Ve~~~~~g~~~~~~~al~~G~iD~~~eytGt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 100 (275)
T 1sw5_A 23 NMIAILLEENGYK--AEVKEGLGGTLVNYEALKRNDIQLYVEYTGTAYNVILRKQPPELWDQQYIFDEVKKGLLEADGVV 100 (275)
T ss_dssp HHHHHHHHHTTCC--EEECTTCCSHHHHHHHHHHTSSSEEEEEHHHHHHTTSCCCCCSSCCHHHHHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHcCCc--EEEEeCCCchHHHHHHHHcCCCcEEEeehhhHHHHhcCCCCccCCCHHHHHHHHHHHhhhcCCeE
Confidence 5566666777988 444541234677899999999999863 111110 0 10 1344
Q ss_pred ccccc-eeeeeEEEEeCCC----CCCcceeecCC
Q 006683 548 FTQPY-AESGFSMIVPAKQ----EESTWMFTKPF 576 (635)
Q Consensus 548 fs~p~-~~~~~~~~v~~~~----~~~~~~~l~pf 576 (635)
+-.|+ ....+.++||+.. ..+..+.|+..
T Consensus 101 ~l~~~~~~~~~~l~V~~~~a~~~~i~si~DL~g~ 134 (275)
T 1sw5_A 101 VAAKLGFRDDYALAVRADWAEENGVEKISDLAEF 134 (275)
T ss_dssp EEEEEEEECCEEEEEEHHHHHHHTCCBGGGGTTT
T ss_pred EeccCCCCCeeEEEEeHHHHHHcCCCcHHHHHhh
Confidence 44454 4567899999865 55555666444
No 360
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=24.76 E-value=2.2e+02 Score=26.52 Aligned_cols=113 Identities=15% Similarity=0.135 Sum_probs=64.7
Q ss_pred CeEEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhh---
Q 006683 33 EVTKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEE--- 109 (635)
Q Consensus 33 ~~i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~--- 109 (635)
+.=+||++...+...+.....+++.|+++. |.++......+ .....+++.+++ +++.+|+-+...-.
T Consensus 139 g~~~I~~i~~~~~~~~~~r~~g~~~al~~~-----gi~~~~~~~~~---~~~~~~~~~~l~--~~~dai~~~~D~~a~g~ 208 (302)
T 2qh8_A 139 NVKSIGVVYNPGEANAVSLMELLKLSAAKH-----GIKLVEATALK---SADVQSATQAIA--EKSDVIYALIDNTVASA 208 (302)
T ss_dssp TCCEEEEEECTTCHHHHHHHHHHHHHHHHT-----TCEEEEEECSS---GGGHHHHHHHHG--GGCSEEEECSCHHHHTT
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHHHc-----CCEEEEEecCC---hHHHHHHHHHHh--ccCCEEEECCcHhHHHH
Confidence 334788887654333445567777777664 34444333222 234455666666 36777776554322
Q ss_pred HHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH
Q 006683 110 TAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA 162 (635)
Q Consensus 110 ~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l 162 (635)
...+...+...++|++++... .+.. |-+..+..+...+++..++++
T Consensus 209 ~~~l~~~~~~~~i~vig~d~~----~~~~---~~Lttv~~~~~~~G~~Aa~~l 254 (302)
T 2qh8_A 209 IEGMIVAANQAKTPVFGAATS----YVER---GAIASLGFDYYQIGVQTADYV 254 (302)
T ss_dssp HHHHHHHHHHTTCCEEESSHH----HHHT---TCSEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEECCHH----HHhC---CcEEEEeCCHHHHHHHHHHHH
Confidence 233444454579999986422 2222 444556677777888777765
No 361
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=24.52 E-value=1.5e+02 Score=27.27 Aligned_cols=69 Identities=9% Similarity=0.112 Sum_probs=40.7
Q ss_pred HHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccEEEeccccccc---c---cccccc-cccceeeeeEEEEeCC
Q 006683 493 ELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGN---R---TEYVEF-TQPYAESGFSMIVPAK 564 (635)
Q Consensus 493 dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~---r---~~~~~f-s~p~~~~~~~~~v~~~ 564 (635)
+.++.+.+..+..++++..+ +...++.+|.+|++|.++.....-.. + ...+.. ..++....+.++++++
T Consensus 143 ~~l~~~~~~~~~~~~~~~~~---~~~~~~~~L~~G~vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 218 (287)
T 2vha_A 143 VLLNKLNEEQKMNMRIISAK---DHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAYGCMLRKD 218 (287)
T ss_dssp HHHHHHHHHTTCCCEEEEES---SHHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEEEEEEECTT
T ss_pred HHHHHHhhccCCCceEEEcC---CHHHHHHHHHcCCeeEEEeChHHHHHHHHhCCCCCceEecCCccccCceEEEEeCC
Confidence 34555555555554455444 47889999999999998875432111 1 011211 2345566677777765
No 362
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A
Probab=24.30 E-value=3.3e+02 Score=26.23 Aligned_cols=130 Identities=13% Similarity=0.149 Sum_probs=74.9
Q ss_pred EEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCC---CC-HHHHHHHHHHHhhcCCeEEEEcCCChhhH
Q 006683 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHN---RD-PFQAATAAQELINKEKVKVIAGMETWEET 110 (635)
Q Consensus 35 i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~---~~-~~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (635)
-.|+.+|-..+ .....+|+.|+.++. |..+.+...++. +. -..+++.+..+. .++++=++. .
T Consensus 46 k~la~lF~e~S---TRTR~SFE~A~~~LG----g~~i~l~~~~ss~~kgEsl~DTarvLs~~~---D~IviR~~~----~ 111 (335)
T 1dxh_A 46 KNIALIFEKTS---TRTRCAFEVAAYDQG----ANVTYIDPNSSQIGHKESMKDTARVLGRMY---DAIEYRGFK----Q 111 (335)
T ss_dssp CEEEEEESSCC---HHHHHHHHHHHHHTT----CEEEEECTTTCCBTTTBCHHHHHHHHHHHC---SEEEEECSC----H
T ss_pred CEEEEEecCCC---cchHHHHHHHHHHcC----CeEEEECCccccCcCCCcHHHHHHHHHhhC---CEEEEecCC----h
Confidence 46788887654 467789999998875 334555333332 22 223333333332 344444432 2
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH---HHCC--C--eEEEEEEEcCCCCCCc
Q 006683 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYN--W--RRVAAIYEDNVYGGDS 183 (635)
Q Consensus 111 ~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l---~~~~--w--~~vaii~~~~~~g~~~ 183 (635)
..+..+++..++|+|+.+.. ...| .+++++++ +++| . .+|+++.+ .. .
T Consensus 112 ~~~~~lA~~s~vPVINa~~~--------~~HP------------tQ~LaDl~Ti~e~~g~~l~gl~va~vGD--~~---~ 166 (335)
T 1dxh_A 112 EIVEELAKFAGVPVFNGLTD--------EYHP------------TQMLADVLTMREHSDKPLHDISYAYLGD--AR---N 166 (335)
T ss_dssp HHHHHHHHHSSSCEEEEECS--------SCCH------------HHHHHHHHHHHHTCSSCGGGCEEEEESC--CS---S
T ss_pred hHHHHHHHhCCCCEEcCCCC--------CCCc------------HHHHHHHHHHHHHcCCCcCCeEEEEecC--Cc---c
Confidence 33455566678999985422 1223 36777775 5666 2 46666643 22 3
Q ss_pred chHHHHHHHHhccCCeEEEEE
Q 006683 184 GKLALLAEALQNVSSSEIQSR 204 (635)
Q Consensus 184 ~~~~~~~~~l~~~g~~~v~~~ 204 (635)
..+..+...+...| .++...
T Consensus 167 ~va~Sl~~~~~~~G-~~v~~~ 186 (335)
T 1dxh_A 167 NMGNSLLLIGAKLG-MDVRIA 186 (335)
T ss_dssp HHHHHHHHHHHHTT-CEEEEE
T ss_pred chHHHHHHHHHHcC-CEEEEE
Confidence 46777888888889 776654
No 363
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=24.19 E-value=1.9e+02 Score=24.85 Aligned_cols=64 Identities=11% Similarity=0.127 Sum_probs=39.0
Q ss_pred EEEEEEEcCC--CCCC-cchHHHHHHHHh---ccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc-CceEEEEecCC
Q 006683 169 RVAAIYEDNV--YGGD-SGKLALLAEALQ---NVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK-QSRVFIVLQAS 241 (635)
Q Consensus 169 ~vaii~~~~~--~g~~-~~~~~~~~~~l~---~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~-~~~vii~~~~~ 241 (635)
+++||...|. .|.- ..-...+.+.++ +.| .++ ....++.+. ..+.+.+++..+. ++|+||. .+.
T Consensus 7 rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G-~~v-~~~iv~Dd~------~~I~~~l~~~~~~~~~DlVit-tGG 77 (178)
T 2pbq_A 7 VIGVVTISDRASKGIYEDISGKAIIDYLKDVIITP-FEV-EYRVIPDER------DLIEKTLIELADEKGCSLILT-TGG 77 (178)
T ss_dssp EEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSC-CEE-EEEEECSCH------HHHHHHHHHHHHTSCCSEEEE-ESC
T ss_pred EEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCC-CEE-EEEEcCCCH------HHHHHHHHHHHhcCCCCEEEE-CCC
Confidence 6777776543 1100 222445677666 889 888 554554433 6677778777653 7899998 554
No 364
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=23.89 E-value=85 Score=28.79 Aligned_cols=87 Identities=14% Similarity=0.122 Sum_probs=51.6
Q ss_pred HHHHHHHHHH-----HCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhh
Q 006683 154 QMKCIADLAR-----KYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQ 228 (635)
Q Consensus 154 ~~~al~~~l~-----~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~ 228 (635)
.+..+++.+. ....++|.++..+. + ...+.+.|++.| ..+.....|.......+ .....+.+.
T Consensus 115 ~~e~L~~~l~~~~~~~~~~~~vL~~rg~~--~-----r~~L~~~L~~~G-~~v~~~~vY~~~~~~~~----~~~~~~~l~ 182 (254)
T 4es6_A 115 DSEALLALPAFQDSLRVHDPKVLIMRGEG--G-----REFLAERLRGQG-VQVDYLPLYRRRAPDYP----AGELLARVR 182 (254)
T ss_dssp SHHHHHTCHHHHHHTCSSSCEEEEEECSS--C-----CCHHHHHHHHTT-CEEEEEECEEEECCCCC----TTHHHHHHH
T ss_pred CHHHHHHhHhhcccccCCCCEEEEEcCCc--c-----HHHHHHHHHHCC-CEEEEEeEEEeeCCCCC----HHHHHHHHH
Confidence 4677777765 34567887776543 2 345667777888 77665544433221111 112334445
Q ss_pred hcCceEEEEecCChhHHHHHHHHHHH
Q 006683 229 DKQSRVFIVLQASLDMTIHLFTEANR 254 (635)
Q Consensus 229 ~~~~~vii~~~~~~~~~~~~l~~a~~ 254 (635)
....|+|+ +.++..+..+++.+.+
T Consensus 183 ~~~~d~v~--ftS~s~v~~~~~~~~~ 206 (254)
T 4es6_A 183 AERLNGLV--VSSGQGLQNLYQLAAA 206 (254)
T ss_dssp HTTCCEEE--CCSHHHHHHHHHHHGG
T ss_pred hCCCCEEE--EcCHHHHHHHHHHhhH
Confidence 55778776 4888888888877643
No 365
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=23.84 E-value=1.3e+02 Score=26.73 Aligned_cols=100 Identities=13% Similarity=0.096 Sum_probs=53.3
Q ss_pred HHHHHHHHHHCCCeEEEEEEEcCC--CCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCc
Q 006683 155 MKCIADLARKYNWRRVAAIYEDNV--YGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQS 232 (635)
Q Consensus 155 ~~al~~~l~~~~w~~vaii~~~~~--~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~ 232 (635)
...+.++++..+-++|++|-.-.. .. ....+.+++.+++.| .++.... +... +.....+.++ ++
T Consensus 15 ~~~~~~f~~~~~~~~i~~Ip~As~~~~~--~~~~~s~~~a~~~lG-~~v~~~~-i~~~--------~~~~~~~~l~--~a 80 (206)
T 3l4e_A 15 VPLFTEFESNLQGKTVTFIPTASTVEEV--TFYVEAGKKALESLG-LLVEELD-IATE--------SLGEITTKLR--KN 80 (206)
T ss_dssp HHHHHHHSCCCTTCEEEEECGGGGGCSC--CHHHHHHHHHHHHTT-CEEEECC-TTTS--------CHHHHHHHHH--HS
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCCH--HHHHHHHHHHHHHcC-CeEEEEE-ecCC--------ChHHHHHHHH--hC
Confidence 344455555555689998853221 11 346788999999999 7655322 1111 1223334444 46
Q ss_pred eEEEEecCChhHHHHHHHHHHHcCCCC-------CCeEEEeeCchh
Q 006683 233 RVFIVLQASLDMTIHLFTEANRMGLVG-------KDSVWIVTNTVA 271 (635)
Q Consensus 233 ~vii~~~~~~~~~~~~l~~a~~~g~~~-------~~~~~i~~~~~~ 271 (635)
|.|++ .+ + +...+++.+++.|+.. .+.++++++...
T Consensus 81 d~I~l-~G-G-~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sAGa 123 (206)
T 3l4e_A 81 DFIYV-TG-G-NTFFLLQELKRTGADKLILEEIAAGKLYIGESAGA 123 (206)
T ss_dssp SEEEE-CC-S-CHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETHHH
T ss_pred CEEEE-CC-C-CHHHHHHHHHHCChHHHHHHHHHcCCeEEEECHHH
Confidence 78888 55 2 2224444444444411 124677776544
No 366
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=23.77 E-value=93 Score=31.08 Aligned_cols=82 Identities=13% Similarity=0.173 Sum_probs=49.0
Q ss_pred HHHHHHHCCCeEEEEEEEcCCCCCCc-chHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEE
Q 006683 158 IADLARKYNWRRVAAIYEDNVYGGDS-GKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFI 236 (635)
Q Consensus 158 l~~~l~~~~w~~vaii~~~~~~g~~~-~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii 236 (635)
+.++++ ++ +++.+|+++.... . ...+.+.+.++ | +++. .++.....+ ..+...+.++.+++.++|+||
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~--~~g~~~~v~~~L~--g-~~~~---~f~~v~~~p-~~~~v~~~~~~~~~~~~D~II 111 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVK--KTGVLDQVLDALK--G-MDVL---EFGGIEPNP-AYETLMNAVKLVREQKVTFLL 111 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHH--HHSHHHHHHHHTT--T-SEEE---EECCCCSSC-BHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHh-cC-CEEEEEECCchhh--hccHHHHHHHHhC--C-CEEE---EeCCcCCCc-CHHHHHHHHHHHHHcCCCEEE
Confidence 455666 67 8998888654322 2 25677777776 7 6643 233322111 225677788888888999999
Q ss_pred EecCCh--hHHHHHHHH
Q 006683 237 VLQASL--DMTIHLFTE 251 (635)
Q Consensus 237 ~~~~~~--~~~~~~l~~ 251 (635)
- .+.+ -++..++..
T Consensus 112 a-vGGGsviD~AK~iA~ 127 (408)
T 1oj7_A 112 A-VGGGSVLDGTKFIAA 127 (408)
T ss_dssp E-EESHHHHHHHHHHHH
T ss_pred E-eCCchHHHHHHHHHH
Confidence 7 4443 344444433
No 367
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=23.70 E-value=1.5e+02 Score=24.84 Aligned_cols=88 Identities=8% Similarity=-0.001 Sum_probs=47.8
Q ss_pred EEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCCh--hHH-
Q 006683 169 RVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL--DMT- 245 (635)
Q Consensus 169 ~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~--~~~- 245 (635)
++.|+|.+. +|+-+.+++.+.+.+.+.| +.+... +... .+....+..+.+ .|.|++ .+.. ...
T Consensus 2 kv~IvY~S~-tGnT~~~A~~ia~~l~~~g-~~v~~~---~~~~------~~~~~~~~~~~~--~d~ii~-Gspty~g~~p 67 (161)
T 3hly_A 2 SVLIGYLSD-YGYSDRLSQAIGRGLVKTG-VAVEMV---DLRA------VDPQELIEAVSS--ARGIVL-GTPPSQPSEA 67 (161)
T ss_dssp CEEEEECTT-STTHHHHHHHHHHHHHHTT-CCEEEE---ETTT------CCHHHHHHHHHH--CSEEEE-ECCBSSCCHH
T ss_pred EEEEEEECC-ChHHHHHHHHHHHHHHhCC-CeEEEE---ECCC------CCHHHHHHHHHh--CCEEEE-EcCCcCCchh
Confidence 467888664 3422667788888888888 765432 2221 224445555553 456665 4432 112
Q ss_pred -HHHHHHHHHcCCCCCCeEEEeeCch
Q 006683 246 -IHLFTEANRMGLVGKDSVWIVTNTV 270 (635)
Q Consensus 246 -~~~l~~a~~~g~~~~~~~~i~~~~~ 270 (635)
..++.......+.+.....+++..|
T Consensus 68 ~~~fl~~l~~~~l~gk~v~~fgs~g~ 93 (161)
T 3hly_A 68 VATALSTIFAAAHNKQAIGLFDSYGG 93 (161)
T ss_dssp HHHHHHHHHHHCCTTSEEEEECCCCS
T ss_pred HHHHHHHHHhhhhCCCEEEEEEcCCC
Confidence 4666666655565554444444333
No 368
>3g23_A Peptidase U61, LD-carboxypeptidase A; flavodoxin-like fold, catalytic triad, merops S66 unassigned peptidases family; HET: MSE; 1.89A {Novosphingobium aromaticivorans}
Probab=23.69 E-value=2.4e+02 Score=26.22 Aligned_cols=82 Identities=9% Similarity=-0.079 Sum_probs=53.3
Q ss_pred eEEEEEEEcCCCCCCcchHHHHHHHHhc--cCCeEEEEEeeeCCC-C-CCCCchHHHHHHHHhhhhcCceEEEEecCChh
Q 006683 168 RRVAAIYEDNVYGGDSGKLALLAEALQN--VSSSEIQSRLVLPPI-S-SISDPKEAVRGELKKVQDKQSRVFIVLQASLD 243 (635)
Q Consensus 168 ~~vaii~~~~~~g~~~~~~~~~~~~l~~--~g~~~v~~~~~~~~~-~-~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~ 243 (635)
++|++|....... ....+...+.++. .| .+|+........ . ....+.....+..+.+.+.+.++|+. .-.+.
T Consensus 4 ~~I~ivaPSs~~~--~~~~~~~~~~l~~~~~G-~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~-~rGGy 79 (274)
T 3g23_A 4 RRIAICAPSTPFT--REDSARVIALAAAEFPD-LSLSFHEQCFASEGHFAGSDALRLSAFLECANDDAFEAVWF-VRGGY 79 (274)
T ss_dssp EEEEEECSSSCCC--HHHHHHHHHHHHHHCTT-EEEEECGGGGCCSSSSSSCHHHHHHHHHHHHTCTTCSEEEE-SCCSS
T ss_pred CEEEEEeCCCCCC--HHHHHHHHHHHHhccCC-eEEEECcchhhccCccCCCHHHHHHHHHHHhhCCCCCEEEE-eeccc
Confidence 7899998887643 4445555556665 48 888865433221 1 12223344555555566678999999 88888
Q ss_pred HHHHHHHHHH
Q 006683 244 MTIHLFTEAN 253 (635)
Q Consensus 244 ~~~~~l~~a~ 253 (635)
.+.+++....
T Consensus 80 ga~rlL~~lD 89 (274)
T 3g23_A 80 GANRIAEDAL 89 (274)
T ss_dssp CTHHHHHHHH
T ss_pred cHHHHHHhhh
Confidence 8999988874
No 369
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=23.62 E-value=4.6e+02 Score=24.64 Aligned_cols=119 Identities=12% Similarity=0.077 Sum_probs=66.7
Q ss_pred EEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhc-CCeEEEEcCCChhhHHH
Q 006683 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETAV 112 (635)
Q Consensus 35 i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~~ 112 (635)
=+||++.... ......-..|++.|+++.+-.. .... +.....+...+.+.+.+++.. .++.+|+.. +...+..
T Consensus 178 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~---~~~~-~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~-nd~~A~g 252 (340)
T 1qpz_A 178 REIGVIPGPLERNTGAGRLAGFMKAMEEAMIKV---PESW-IVQGDFEPESGYRAMQQILSQPHRPTAVFCG-GDIMAMG 252 (340)
T ss_dssp CCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCC---CGGG-BCCCCSSHHHHHHHHHHHHTSSSCCSEEEES-SHHHHHH
T ss_pred CEEEEEeCCCccccHHHHHHHHHHHHHHCCCCC---Chhh-eEeCCCCHHHHHHHHHHHHcCCCCCcEEEEC-CHHHHHH
Confidence 3577775432 2223455677888877754221 0001 122334677777888888853 578899974 4444555
Q ss_pred HHHhhccCC------ccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH
Q 006683 113 VAEIASRVQ------VPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA 162 (635)
Q Consensus 113 v~~~~~~~~------ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l 162 (635)
+...+...+ +.++++... + ......|-+-.+..+...++...+++|
T Consensus 253 ~~~al~~~G~~vP~disvig~D~~---~-~~~~~~p~lttv~~~~~~~g~~a~~~l 304 (340)
T 1qpz_A 253 ALCAADEMGLRVPQDVSLIGYDNV---R-NARYFTPALTTIHQPKDSLGETAFNML 304 (340)
T ss_dssp HHHHHHHTTCCTTTTCEEEEEECC---T-TGGGSSSCCEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCeEEEeECCc---h-HhhccCCceeEEecCHHHHHHHHHHHH
Confidence 555555543 347777644 2 233223445556666677777666665
No 370
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=23.53 E-value=4.2e+02 Score=24.05 Aligned_cols=120 Identities=14% Similarity=0.096 Sum_probs=67.5
Q ss_pred eEEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhc-CCeEEEEcCCChhhHH
Q 006683 34 VTKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINK-EKVKVIAGMETWEETA 111 (635)
Q Consensus 34 ~i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~-~~v~aiiG~~~s~~~~ 111 (635)
.=+|+++.... ......-..|++.++++.+. . +.- ......+...+.+.+.+++.. ..+.+|+.. +...+.
T Consensus 131 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~----~-~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~ 203 (289)
T 3brs_A 131 SGKIGVISFVKNSKTAMDREEGLKIGLSDDSN----K-IEA-IYYCDSNYDKAYDGTVELLTKYPDISVMVGL-NQYSAT 203 (289)
T ss_dssp SCEEEEEESCTTSHHHHHHHHHHHHHHGGGGG----G-EEE-EEECTTCHHHHHHHHHHHHHHCTTEEEEEES-SHHHHH
T ss_pred CceEEEEECCCCCccHHHHHHHHHHHHHhCCC----c-EEe-eecCCCCHHHHHHHHHHHHHhCCCceEEEEC-CCcchH
Confidence 34788887653 23344556788888777432 1 221 223345677777888888854 468999974 344455
Q ss_pred HHHHhhccCC----ccEEeecCCCCCCCCCCCCCceE-EEEecCcHHHHHHHHHHH
Q 006683 112 VVAEIASRVQ----VPILSFAAPAVTPLSMSRRWPYL-IRMASNDSEQMKCIADLA 162 (635)
Q Consensus 112 ~v~~~~~~~~----ip~Is~~~~~~~~~l~~~~~p~~-~r~~p~~~~~~~al~~~l 162 (635)
.+...+...+ +.++++... ......-..|.+ ..+..+...++...+++|
T Consensus 204 g~~~al~~~G~~~di~vvg~d~~--~~~~~~~~~~~l~ttv~~~~~~~g~~a~~~l 257 (289)
T 3brs_A 204 GAARAIKDMSLEAKVKLVCIDSS--MEQIQYLEEGIFEAMVVQKPFNIGYLGVEKA 257 (289)
T ss_dssp HHHHHHHHTTCTTTSEEEEEESC--SCC-----CCSCCEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEEECCC--HHHHHHHHCCceEEEEecChHHHHHHHHHHH
Confidence 5555555444 678877655 211111111334 455566667777666665
No 371
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=23.39 E-value=1.9e+02 Score=26.88 Aligned_cols=69 Identities=14% Similarity=-0.067 Sum_probs=44.7
Q ss_pred HHHHHHCCCeEEEEEEEcC--CCCCCc-chHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEE
Q 006683 159 ADLARKYNWRRVAAIYEDN--VYGGDS-GKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVF 235 (635)
Q Consensus 159 ~~~l~~~~w~~vaii~~~~--~~g~~~-~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vi 235 (635)
+.-|+.-+-+.|+++..+. +|. . .+.+.+.+.+++.| ..+..... ... .......++.+.+.+.|.|
T Consensus 5 Ar~L~~~~s~~Igvi~~~~~~~~~--~~~~~~gi~~~a~~~g-~~~~~~~~--~~~-----~~~~~~~~~~l~~~~vdGi 74 (301)
T 3miz_A 5 ARLIRSSRSNTFGIITDYVSTTPY--SVDIVRGIQDWANANG-KTILIANT--GGS-----SEREVEIWKMFQSHRIDGV 74 (301)
T ss_dssp -------CCCEEEEEESSTTTCCS--CHHHHHHHHHHHHHTT-CEEEEEEC--TTC-----HHHHHHHHHHHHHTTCSEE
T ss_pred HHHHhhCCCCEEEEEeCCCcCccc--HHHHHHHHHHHHHHCC-CEEEEEeC--CCC-----hHHHHHHHHHHHhCCCCEE
Confidence 3344455567899998764 455 6 88999999999999 77764321 111 1345567888888899999
Q ss_pred EE
Q 006683 236 IV 237 (635)
Q Consensus 236 i~ 237 (635)
|+
T Consensus 75 Ii 76 (301)
T 3miz_A 75 LY 76 (301)
T ss_dssp EE
T ss_pred EE
Confidence 98
No 372
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=23.35 E-value=4.2e+02 Score=24.08 Aligned_cols=119 Identities=13% Similarity=0.105 Sum_probs=67.8
Q ss_pred EEEEEEeeCC-CcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhh-c-C-CeEEEEcCCChhhH
Q 006683 35 TKIGAIVDAN-SQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELIN-K-E-KVKVIAGMETWEET 110 (635)
Q Consensus 35 i~IG~i~p~s-~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~-~-~-~v~aiiG~~~s~~~ 110 (635)
=+||++.... ......-..|++.++++.+-.... .. +.....+...+.+.+.+++. . . ++.+|+.. +...+
T Consensus 126 ~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~---~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~-~d~~a 200 (287)
T 3bbl_A 126 RRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIET---GY-ILRGEGTFEVGRAMTLHLLDLSPERRPTAIMTL-NDTMA 200 (287)
T ss_dssp CCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCG---GG-EEECCSSHHHHHHHHHHHHTSCTTTSCSEEEES-SHHHH
T ss_pred CeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCCh---hh-EEeCCCCHHHHHHHHHHHHhhCCCCCCcEEEEC-CcHHH
Confidence 3677776543 223345567888888875422110 11 12234567777888888885 3 3 68899974 34445
Q ss_pred HHHHHhhccCC------ccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH
Q 006683 111 AVVAEIASRVQ------VPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA 162 (635)
Q Consensus 111 ~~v~~~~~~~~------ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l 162 (635)
..+...+...+ +.++++... .......|.+-.+..+...++...+++|
T Consensus 201 ~g~~~al~~~G~~vP~di~vig~d~~----~~~~~~~p~lttv~~~~~~~g~~a~~~l 254 (287)
T 3bbl_A 201 IGAMAAARERGLTIGTDLAIIGFDDA----PMVQYLFPPLSSVRQPIAEAGRKCIELL 254 (287)
T ss_dssp HHHHHHHHHTTCCBTTTBEEEEESCC----TTGGGSSSCCEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCEEEEEECCc----hHhhccCCCCceEcCCHHHHHHHHHHHH
Confidence 55555554443 337777644 2222222445556666677777777765
No 373
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=23.30 E-value=1e+02 Score=29.31 Aligned_cols=80 Identities=13% Similarity=0.024 Sum_probs=48.5
Q ss_pred CCeEEEEEEEc--CCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChh
Q 006683 166 NWRRVAAIYED--NVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLD 243 (635)
Q Consensus 166 ~w~~vaii~~~--~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~ 243 (635)
.-+.|+++..+ ++|. ..+.+.+.+.+++.| ..+.... ... ........++.+...++|.||+ .....
T Consensus 59 ~~~~Ig~i~~~~~~~~~--~~~~~gi~~~a~~~g-~~~~~~~---~~~----~~~~~~~~~~~l~~~~vdgiI~-~~~~~ 127 (332)
T 2hsg_A 59 KTTTVGVIIPDISNIFY--AELARGIEDIATMYK-YNIILSN---SDQ----NQDKELHLLNNMLGKQVDGIIF-MSGNV 127 (332)
T ss_dssp -CCEEEEEEC--CCSHH--HHHHHHHHHHHHHHT-CEEEEEE---CCS----HHHHHHHHHHHTSCCSSCCEEE-CCSSC
T ss_pred CCCEEEEEeCCCCCcHH--HHHHHHHHHHHHHcC-CEEEEEe---CCC----ChHHHHHHHHHHHhCCCcEEEE-ecCCC
Confidence 34578988864 4555 677888899999999 7765432 111 1123445677777778999888 54322
Q ss_pred HHHHHHHHHHHcCC
Q 006683 244 MTIHLFTEANRMGL 257 (635)
Q Consensus 244 ~~~~~l~~a~~~g~ 257 (635)
.. ..++.+.+.++
T Consensus 128 ~~-~~~~~l~~~~i 140 (332)
T 2hsg_A 128 TE-EHVEELKKSPV 140 (332)
T ss_dssp CH-HHHHHHTTSSS
T ss_pred CH-HHHHHHHhCCC
Confidence 21 34555555554
No 374
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=23.16 E-value=3.4e+02 Score=22.93 Aligned_cols=43 Identities=12% Similarity=-0.065 Sum_probs=28.2
Q ss_pred HHHHHHHHhhcCCeEEEEcCCChh-hHHHHHHhhccCCccEEee
Q 006683 85 AATAAQELINKEKVKVIAGMETWE-ETAVVAEIASRVQVPILSF 127 (635)
Q Consensus 85 a~~~~~~li~~~~v~aiiG~~~s~-~~~~v~~~~~~~~ip~Is~ 127 (635)
.++.+.+++.+.+-+.++|...|. .+...+..+...+++....
T Consensus 26 ~i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~ 69 (186)
T 1m3s_A 26 EADQLADHILSSHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIV 69 (186)
T ss_dssp HHHHHHHHHHHCSCEEEECSHHHHHHHHHHHHHHHHTTCCEEET
T ss_pred HHHHHHHHHHcCCeEEEEecCHHHHHHHHHHHHHHhcCCeEEEe
Confidence 456666666577778888876664 3445555666677777654
No 375
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=22.90 E-value=1.3e+02 Score=28.09 Aligned_cols=70 Identities=16% Similarity=0.110 Sum_probs=45.9
Q ss_pred HHHHHHHH---HH-CCCcccE--EEecCCCChhhHHHHHHc-C-cccEEEecccccccc---cccccccccceeeeeEEE
Q 006683 492 IELFRLVV---DH-LNYDLPY--EFVPHDGVYDDLINGVYD-K-TYDAAVGDLTILGNR---TEYVEFTQPYAESGFSMI 560 (635)
Q Consensus 492 ~dl~~~la---~~-l~~~~~~--~~~~~~~~~~~~~~~l~~-g-~~D~~~~~~~~~~~r---~~~~~fs~p~~~~~~~~~ 560 (635)
-++++.+. ++ .|.++++ ..- +-..++..|.+ | .+|+.++.-....++ ....+...||....++|+
T Consensus 20 ~~~~~~F~~~~~~~~gi~V~~~~~~~----~s~~l~~~i~~~g~~~Dv~~~~~~~~~~~l~~~g~~~~~~~~~~~~~vi~ 95 (296)
T 3cg1_A 20 QEVEKEFSEYAERNLGIKVSFQDEAS----GSVMAVRKVTDLGRKADVIGVADYTLIPQLLIPNYTDFYVLFATNEIVIA 95 (296)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEEEEE----CHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECCEEEE
T ss_pred HHHHHHHHHHHHhCCCceEEEEeecC----CHHHHHHHHHhCCCCCCEEEECChhHHHHHhcCCCCCcceecccccEEEE
Confidence 46888887 77 7988665 332 24567888877 5 699987643222122 122245678888899999
Q ss_pred EeCCC
Q 006683 561 VPAKQ 565 (635)
Q Consensus 561 v~~~~ 565 (635)
++++.
T Consensus 96 ~~~~~ 100 (296)
T 3cg1_A 96 FTDKS 100 (296)
T ss_dssp ECTTS
T ss_pred EcCCC
Confidence 98764
No 376
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=22.82 E-value=2.1e+02 Score=24.31 Aligned_cols=80 Identities=10% Similarity=0.039 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCce
Q 006683 154 QMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSR 233 (635)
Q Consensus 154 ~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~ 233 (635)
.++....+.++++.+++.++-++-. . ..+.+.+.+.+.-.| +++.... . .+....+++-+..+-+
T Consensus 14 HGQV~t~W~k~~~~~~IiVvnD~vA-~--D~~~k~~lk~a~P~g-vk~~i~s---v--------e~ai~~~~~~~~~~~~ 78 (164)
T 1nrz_A 14 HGQVTTVWSKVANAQRIIICNDDVF-N--DEVRRTLLRQAAPPG-MKVNVVS---L--------EKAVAVYHNPQYQDET 78 (164)
T ss_dssp CHHHHHHHHHHHTCSEEEEECHHHH-T--CHHHHHHHHHTCCTT-CEEEEEC---H--------HHHHHHHTCGGGTTCE
T ss_pred chhheeeeccccCCCEEEEeCcccc-C--CHHHHHHHHhcCCCC-CeEEEEE---H--------HHHHHHHhcccCCCce
Confidence 4778889999999999888754433 3 456666666666668 7765431 1 3455555555545778
Q ss_pred EEEEecCChhHHHHHH
Q 006683 234 VFIVLQASLDMTIHLF 249 (635)
Q Consensus 234 vii~~~~~~~~~~~~l 249 (635)
++++ .-++.++..+.
T Consensus 79 v~ll-~k~p~d~~~lv 93 (164)
T 1nrz_A 79 VFYL-FTNPHDVLTMV 93 (164)
T ss_dssp EEEE-ESSHHHHHHHH
T ss_pred EEEE-ECCHHHHHHHH
Confidence 8888 99999887764
No 377
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=22.66 E-value=3.1e+02 Score=22.18 Aligned_cols=86 Identities=14% Similarity=0.064 Sum_probs=53.6
Q ss_pred EEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCCh----hH
Q 006683 169 RVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL----DM 244 (635)
Q Consensus 169 ~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~----~~ 244 (635)
+|.+-....+ .| .-...-+...++..| .++.+--... .....++.+++.++++|.+ .+.. ..
T Consensus 5 ~vvla~~~~d-~H-diG~~~v~~~l~~~G-~~Vi~lG~~~----------p~e~~v~~a~~~~~d~v~l-S~~~~~~~~~ 70 (137)
T 1ccw_A 5 TIVLGVIGSD-CH-AVGNKILDHAFTNAG-FNVVNIGVLS----------PQELFIKAAIETKADAILV-SSLYGQGEID 70 (137)
T ss_dssp EEEEEEETTC-CC-CHHHHHHHHHHHHTT-CEEEEEEEEE----------CHHHHHHHHHHHTCSEEEE-EECSSTHHHH
T ss_pred EEEEEeCCCc-hh-HHHHHHHHHHHHHCC-CEEEECCCCC----------CHHHHHHHHHhcCCCEEEE-EecCcCcHHH
Confidence 4445444444 32 444677778899999 8888554321 1446777788789999998 6543 23
Q ss_pred HHHHHHHHHHcCCCCCCeEEEeeCc
Q 006683 245 TIHLFTEANRMGLVGKDSVWIVTNT 269 (635)
Q Consensus 245 ~~~~l~~a~~~g~~~~~~~~i~~~~ 269 (635)
...+++++++.+... ...|++...
T Consensus 71 ~~~~i~~l~~~g~~~-i~v~vGG~~ 94 (137)
T 1ccw_A 71 CKGLRQKCDEAGLEG-ILLYVGGNI 94 (137)
T ss_dssp HTTHHHHHHHTTCTT-CEEEEEESC
T ss_pred HHHHHHHHHhcCCCC-CEEEEECCC
Confidence 455677777777642 245555543
No 378
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=22.43 E-value=3.1e+02 Score=26.22 Aligned_cols=129 Identities=14% Similarity=0.203 Sum_probs=73.7
Q ss_pred EEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCC---CCH-HHHHHHHHHHhhcCCeEEEEcCCChhhH
Q 006683 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHN---RDP-FQAATAAQELINKEKVKVIAGMETWEET 110 (635)
Q Consensus 35 i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~---~~~-~~a~~~~~~li~~~~v~aiiG~~~s~~~ 110 (635)
-.|+.+|-..+ .....+|+.|+.++. |..+.+...++. +.+ ..+++.+..+. .++++=.+ ..
T Consensus 47 k~l~~lF~e~S---TRTR~SFe~A~~~LG----g~~i~l~~~~ss~~kgEsl~DTarvls~~~---D~iviR~~-~~--- 112 (321)
T 1oth_A 47 KSLGMIFEKRS---TRTRLSTETGFALLG----GHPCFLTTQDIHLGVNESLTDTARVLSSMA---DAVLARVY-KQ--- 112 (321)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHTT----CEEEEEETTTSCBTTTBCHHHHHHHHHHHC---SEEEEECS-CH---
T ss_pred CEEEEEecCCC---cchHHHHHHHHHHcC----CeEEEECCCcCcCCCCCCHHHHHHHHHHhC---CEEEEeCC-Ch---
Confidence 46788886654 366778999998876 445655544432 222 22333333332 33333332 22
Q ss_pred HHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH---HHCC---CeEEEEEEEcCCCCCCcc
Q 006683 111 AVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYN---WRRVAAIYEDNVYGGDSG 184 (635)
Q Consensus 111 ~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l---~~~~---w~~vaii~~~~~~g~~~~ 184 (635)
..+..+++..++|+|+.+ + +...| .+++++++ +++| ..+|+++.+ + ..
T Consensus 113 ~~~~~lA~~~~vPVINa~-~-------~~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vGD----~--~~ 166 (321)
T 1oth_A 113 SDLDTLAKEASIPIINGL-S-------DLYHP------------IQILADYLTLQEHYSSLKGLTLSWIGD----G--NN 166 (321)
T ss_dssp HHHHHHHHHCSSCEEESC-C-------SSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESC----S--SH
T ss_pred hHHHHHHHhCCCCEEcCC-C-------CCCCc------------HHHHHHHHHHHHHhCCcCCcEEEEECC----c--hh
Confidence 234455667789999744 2 22223 26677765 4554 357777643 3 44
Q ss_pred hHHHHHHHHhccCCeEEEEE
Q 006683 185 KLALLAEALQNVSSSEIQSR 204 (635)
Q Consensus 185 ~~~~~~~~l~~~g~~~v~~~ 204 (635)
.+..+...+...| .++...
T Consensus 167 va~Sl~~~~~~~G-~~v~~~ 185 (321)
T 1oth_A 167 ILHSIMMSAAKFG-MHLQAA 185 (321)
T ss_dssp HHHHHHTTTGGGT-CEEEEE
T ss_pred hHHHHHHHHHHcC-CeEEEE
Confidence 6777888888888 777643
No 379
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=22.42 E-value=2.7e+02 Score=21.79 Aligned_cols=58 Identities=12% Similarity=0.121 Sum_probs=37.3
Q ss_pred chHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCCh--hHHHHHHHHHHHcC
Q 006683 184 GKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL--DMTIHLFTEANRMG 256 (635)
Q Consensus 184 ~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~--~~~~~~l~~a~~~g 256 (635)
...+.+...+++.| ..+... . +..+.++.+.+..+|+|++ .... .+...+++..++..
T Consensus 15 ~~~~~l~~~L~~~g-~~v~~~---~----------~~~~al~~~~~~~~dlvl~-D~~lp~~~g~~~~~~lr~~~ 74 (136)
T 3t6k_A 15 TVAEMLELVLRGAG-YEVRRA---A----------SGEEALQQIYKNLPDALIC-DVLLPGIDGYTLCKRVRQHP 74 (136)
T ss_dssp HHHHHHHHHHHHTT-CEEEEE---S----------SHHHHHHHHHHSCCSEEEE-ESCCSSSCHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHCC-CEEEEe---C----------CHHHHHHHHHhCCCCEEEE-eCCCCCCCHHHHHHHHHcCC
Confidence 34677888888888 665421 1 2345666677778999998 6543 34566777776643
No 380
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=22.09 E-value=2e+02 Score=25.15 Aligned_cols=66 Identities=12% Similarity=0.154 Sum_probs=38.7
Q ss_pred eEEEEEEEcCCC--CCC-cchHHHHHHHHhccCCeE--EEEEeeeCCCCCCCCchHHHHHHHHhhhhc-CceEEEEecCC
Q 006683 168 RRVAAIYEDNVY--GGD-SGKLALLAEALQNVSSSE--IQSRLVLPPISSISDPKEAVRGELKKVQDK-QSRVFIVLQAS 241 (635)
Q Consensus 168 ~~vaii~~~~~~--g~~-~~~~~~~~~~l~~~g~~~--v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~-~~~vii~~~~~ 241 (635)
-++++|...|.- |.. ......+.+.+++.| .. +.....++.+. ..+.+.+++..+. ++|+|+. .+.
T Consensus 4 ~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G-~~~~v~~~~iV~Dd~------~~I~~al~~a~~~~~~DlVit-TGG 75 (195)
T 1di6_A 4 LRIGLVSISDRASSGVYQDKGIPALEEWLTSAL-TTPFELETRLIPDEQ------AIIEQTLCELVDEMSCHLVLT-TGG 75 (195)
T ss_dssp EEEEEEEEECC-------CCHHHHHHHHHHHHB-CSCEEEEEEEEESCH------HHHHHHHHHHHHTSCCSEEEE-ESC
T ss_pred CEEEEEEECCCCCCCeEEchHHHHHHHHHHHcC-CCCceEEEEEeCCCH------HHHHHHHHHHHhcCCCCEEEE-CCC
Confidence 367777765541 100 123456777888888 66 44444444332 5677777776653 6899988 544
No 381
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=22.05 E-value=1.2e+02 Score=28.95 Aligned_cols=71 Identities=6% Similarity=0.127 Sum_probs=46.7
Q ss_pred eeHHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCc---ccEEEeccccc-----ccccccc---------------
Q 006683 490 FSIELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKT---YDAAVGDLTIL-----GNRTEYV--------------- 546 (635)
Q Consensus 490 ~~~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~---~D~~~~~~~~~-----~~r~~~~--------------- 546 (635)
+.-++++++.++.|++++++.. .++.+...+..+. .|++...-... ......+
T Consensus 49 ~~~~~~~~f~~~~gi~V~~~~~----~~~~~~~kl~a~~~~~pDv~~~~~~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~ 124 (351)
T 4edp_A 49 LKETVFEPFAKEHGVEIVLDIG----NNSERLTKMKNNPNSQIDITYLAESFAEQGVEAGIFDKLDYSKIPNASEMNEKA 124 (351)
T ss_dssp HHHHTHHHHHHHHTCCEEEEEC----CHHHHHHHHHHCTTCCCCEEEEEHHHHHHHHHHTCBCCCCGGGCGGGGGBCTTT
T ss_pred HHHHHHHHHHHHHCCEEEEEeC----CcHHHHHHHHhcCCCCCCEEEECcHHHHHHHHCCCcccCCchhCCChHHhhHHh
Confidence 4457888888888999777643 3788888887766 99986432210 0011111
Q ss_pred ------cccccceeeeeEEEEeCC
Q 006683 547 ------EFTQPYAESGFSMIVPAK 564 (635)
Q Consensus 547 ------~fs~p~~~~~~~~~v~~~ 564 (635)
.+..|+.....+++++++
T Consensus 125 ~~~~g~~y~~P~~~~~~~l~ynkd 148 (351)
T 4edp_A 125 KSTVEAGYGPAYTLNSIGIVVDPS 148 (351)
T ss_dssp HHHHHHTSSCEEEEEEEEEEECGG
T ss_pred hccCCCeeEEEEEeeEEEEEEcCC
Confidence 145688888999999887
No 382
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=21.94 E-value=1.1e+02 Score=31.18 Aligned_cols=144 Identities=13% Similarity=0.018 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHhhcCCeEE--EEcCCChh-------hHHHHHHhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCc
Q 006683 81 DPFQAATAAQELINKEKVKV--IAGMETWE-------ETAVVAEIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASND 151 (635)
Q Consensus 81 ~~~~a~~~~~~li~~~~v~a--iiG~~~s~-------~~~~v~~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~ 151 (635)
.+..+...+.+++ +.++.+ ++-...++ ....+...++.+++.+|.+.+. .+-+.....-....|..
T Consensus 73 p~~~~~~~v~e~~-~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viGPnc~----Gv~~~~~~~~~~~~~~~ 147 (457)
T 2csu_A 73 PKRFVKDTLIQCG-EKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIGPNCV----GIMNTHVDLNATFITVA 147 (457)
T ss_dssp CHHHHHHHHHHHH-HHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEECSSCC----EEEEGGGTEEEESSCCC
T ss_pred CHHHHHHHHHHHH-HcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEcCCcc----eEEccCCCceeeecCCC
Confidence 4566677777777 555553 33222211 2566778889999999987654 22221000111112221
Q ss_pred HHHHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhc-
Q 006683 152 SEQMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDK- 230 (635)
Q Consensus 152 ~~~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~- 230 (635)
.. -+|++|..+... ...+...+.+.| +-+.....+-... | .++.+.++.+.+.
T Consensus 148 ------------~~--G~v~~vsqSG~~------~~~~~~~~~~~g-~G~s~~vs~G~~~---~--~~~~d~l~~~~~D~ 201 (457)
T 2csu_A 148 ------------KK--GNVAFISQSGAL------GAGIVYKTIKED-IGFSKFISVGNMA---D--VDFAELMEYLADTE 201 (457)
T ss_dssp ------------EE--CSEEEEESCHHH------HHHHHHHHHHTT-CEESEEEECTTCC---S--SCHHHHHHHHTTCS
T ss_pred ------------CC--CCEEEEeCCHHH------HHHHHHHHHhcC-CCeeEEEECCCcC---C--CCHHHHHHHHhcCC
Confidence 11 468999866543 445556667777 6555544443322 3 5678888888765
Q ss_pred CceEEEEecCCh-hHHHHHHHHHHHcC
Q 006683 231 QSRVFIVLQASL-DMTIHLFTEANRMG 256 (635)
Q Consensus 231 ~~~vii~~~~~~-~~~~~~l~~a~~~g 256 (635)
+.++|++ +... .+.+.+++.+++..
T Consensus 202 ~t~~I~l-~~E~i~~~~~f~~~a~~~~ 227 (457)
T 2csu_A 202 EDKAIAL-YIEGVRNGKKFMEVAKRVT 227 (457)
T ss_dssp SCCEEEE-EESCCSCHHHHHHHHHHHH
T ss_pred CCCEEEE-EEecCCCHHHHHHHHHHhc
Confidence 8889988 7776 66788888877754
No 383
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=21.85 E-value=2.6e+02 Score=22.17 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=35.6
Q ss_pred hHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCCh--hHHHHHHHHHHH
Q 006683 185 KLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASL--DMTIHLFTEANR 254 (635)
Q Consensus 185 ~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~--~~~~~~l~~a~~ 254 (635)
..+.+.+.+...| ..+... .+....++.+++..+|+|++ .... .+...++++.++
T Consensus 20 ~~~~l~~~L~~~g-~~v~~~-------------~~~~~a~~~l~~~~~dlii~-d~~l~~~~g~~~~~~l~~ 76 (147)
T 2zay_A 20 ALAASISALSQEG-FDIIQC-------------GNAIEAVPVAVKTHPHLIIT-EANMPKISGMDLFNSLKK 76 (147)
T ss_dssp GGHHHHHHHHHHT-EEEEEE-------------SSHHHHHHHHHHHCCSEEEE-ESCCSSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CeEEEe-------------CCHHHHHHHHHcCCCCEEEE-cCCCCCCCHHHHHHHHHc
Confidence 3667777777788 665421 12345566666668999998 6543 345677777776
No 384
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=21.82 E-value=1.9e+02 Score=24.57 Aligned_cols=80 Identities=8% Similarity=0.015 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHCCCeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCce
Q 006683 154 QMKCIADLARKYNWRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSR 233 (635)
Q Consensus 154 ~~~al~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~ 233 (635)
.++....+.++++.+++.++-++-. . ..+.+.+.+.+.-.| +++.... . .+....+.+-+..+-+
T Consensus 17 HGQV~t~W~~~~~~~~IiVvnD~vA-~--D~~~k~~lk~a~P~g-vk~~i~s---v--------e~ai~~~~~~~~~~~~ 81 (165)
T 1vsq_C 17 HGQVATRWTKETNVSRIIVVSDEVA-A--DTVRKTLLTQVAPPG-VTAHVVD---V--------AKMIRVYNNPKYAGER 81 (165)
T ss_dssp CTTHHHHHHHHTTCSEEEEECHHHH-T--CHHHHHHHHHTCCTT-CEEEEEC---H--------HHHHHHHTCGGGTTCE
T ss_pred chheeeeeccccCCCEEEEeCcccc-C--CHHHHHHHHhcCCCC-CeEEEEE---H--------HHHHHHHhccccCCcE
Confidence 4667788999999999888754433 3 456666666666668 7765431 1 3455555554445778
Q ss_pred EEEEecCChhHHHHHH
Q 006683 234 VFIVLQASLDMTIHLF 249 (635)
Q Consensus 234 vii~~~~~~~~~~~~l 249 (635)
++++ .-++.++..++
T Consensus 82 v~ll-~k~p~d~~~lv 96 (165)
T 1vsq_C 82 VMLL-FTNPTDVERLV 96 (165)
T ss_dssp EEEE-ESSHHHHHHHH
T ss_pred EEEE-ECCHHHHHHHH
Confidence 8888 99999887764
No 385
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=21.81 E-value=1.6e+02 Score=28.61 Aligned_cols=71 Identities=13% Similarity=0.061 Sum_probs=46.4
Q ss_pred HHHHHHHHHHC-CCcccEEEecCCCChhhHHHHHH-cC-cccEEEeccccccccc---ccccccccceeeeeEEEEeCCC
Q 006683 492 IELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVY-DK-TYDAAVGDLTILGNRT---EYVEFTQPYAESGFSMIVPAKQ 565 (635)
Q Consensus 492 ~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~-~g-~~D~~~~~~~~~~~r~---~~~~fs~p~~~~~~~~~v~~~~ 565 (635)
-++.+++.++. |.++++.... -..+..++. .| .+|+.++.-....++. ...+-..+|....+++++++++
T Consensus 58 ~~l~~~Fe~~~pgv~V~~~~gg----Sg~l~~qi~e~G~~aDVf~sad~~~~~~l~~~g~~~~~~~~a~n~lVliv~~~~ 133 (354)
T 3k6v_A 58 EELEAEFEAQHPGVDVQREAAG----SAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILAYTNES 133 (354)
T ss_dssp HHHHHHHHHHSTTCEEEEEEEC----HHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEEECTTS
T ss_pred HHHHHHHHHHCCCcEEEEEeCC----HHHHHHHHHhcCCCccEEEECCHHHHHHHHhCCCCCCceEeECCeEEEEEECCC
Confidence 37788888887 8886665433 345777884 34 7999886433222222 1223345788889999999876
Q ss_pred C
Q 006683 566 E 566 (635)
Q Consensus 566 ~ 566 (635)
+
T Consensus 134 p 134 (354)
T 3k6v_A 134 K 134 (354)
T ss_dssp T
T ss_pred c
Confidence 5
No 386
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=21.80 E-value=3.6e+02 Score=22.65 Aligned_cols=44 Identities=14% Similarity=-0.044 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhcCCeEEEEcCCChh-hHHHHHHhhccCCccEEee
Q 006683 84 QAATAAQELINKEKVKVIAGMETWE-ETAVVAEIASRVQVPILSF 127 (635)
Q Consensus 84 ~a~~~~~~li~~~~v~aiiG~~~s~-~~~~v~~~~~~~~ip~Is~ 127 (635)
..++.+.+++.+.+-+.++|...|. .+...+..+...+.+....
T Consensus 28 ~~i~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~ 72 (180)
T 1jeo_A 28 NKLDSLIDRIIKAKKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFV 72 (180)
T ss_dssp HHHHHHHHHHHHCSSEEEECCHHHHHHHHHHHHHHHHTTCCEEET
T ss_pred HHHHHHHHHHHhCCEEEEEeecHHHHHHHHHHHHHHHcCCeEEEe
Confidence 3455666666677778888876664 4445555556677777654
No 387
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=21.68 E-value=1.6e+02 Score=27.75 Aligned_cols=71 Identities=10% Similarity=0.071 Sum_probs=45.5
Q ss_pred ceeHHHHHHHHHHC-CCcccEEEecCCCChhhHHHHHHcCcccEEEecccccccccccccccccceeeeeEEEEeCCCC
Q 006683 489 GFSIELFRLVVDHL-NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTILGNRTEYVEFTQPYAESGFSMIVPAKQE 566 (635)
Q Consensus 489 G~~~dl~~~la~~l-~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~v~~~~~ 566 (635)
.+-..++..+.++. +.+ +.+.. ++...++..|.+|++|+++...... ....+. +.+.....++++++++.+
T Consensus 106 ~~l~~~l~~f~~~~P~v~--i~l~~--~~~~~~~~~l~~g~~Dlai~~~~~~--~~~~l~-~~~L~~~~~~~v~~~~~p 177 (324)
T 1al3_A 106 YALPGVIKGFIERYPRVS--LHMHQ--GSPTQIAEAVSKGNADFAIATEALH--LYDDLV-MLPCYHWNRSIVVTPEHP 177 (324)
T ss_dssp HTSHHHHHHHHHHCTEEE--EEEEE--CCHHHHHHHHHTTCCSEEEESSCCC--TTSCEE-EEEEEEECEEEEECTTST
T ss_pred hHHHHHHHHHHHHCCCCE--EEEEE--CCHHHHHHHHHCCCceEEEEecCCC--CCCCee-EEEecCCceEEEEcCCCc
Confidence 34568888888776 344 44443 2367899999999999998642221 112222 246777788888877643
No 388
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=21.59 E-value=1.8e+02 Score=24.61 Aligned_cols=65 Identities=18% Similarity=0.202 Sum_probs=40.8
Q ss_pred eEEEEEEEcCC--CCC-CcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCC
Q 006683 168 RRVAAIYEDNV--YGG-DSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQAS 241 (635)
Q Consensus 168 ~~vaii~~~~~--~g~-~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~ 241 (635)
-++++|...|. .|. .......+.+.+++.| .++.....++ |. ..+.+.+++..+.++|+||. .+.
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G-~~v~~~~iv~------Dd-~~i~~al~~a~~~~~DlVit-tGG 75 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQG-FSSAQPEVVA------DG-SPVGEALRKAIDDDVDVILT-SGG 75 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTT-CEECCCEEEC------SS-HHHHHHHHHHHHTTCSEEEE-ESC
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCC-CEEEEEEEeC------CH-HHHHHHHHHHHhCCCCEEEE-CCC
Confidence 46777776553 120 0233566888889999 8877655443 23 55777777766557899998 543
No 389
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=21.56 E-value=5.5e+02 Score=25.10 Aligned_cols=87 Identities=10% Similarity=0.109 Sum_probs=48.3
Q ss_pred CeEEEEEEEcCCCCCCcchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCC-----
Q 006683 167 WRRVAAIYEDNVYGGDSGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQAS----- 241 (635)
Q Consensus 167 w~~vaii~~~~~~g~~~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~----- 241 (635)
.+++.++|.+. +|..+.+++.+.+.+.+.| .++.... +.. .+......++. .+|.|++ .+.
T Consensus 256 ~~kv~iiy~S~-~GnT~~la~~i~~~l~~~g-~~v~~~~-l~~--------~~~~~~~~~l~--~~D~iii-gsP~y~~~ 321 (414)
T 2q9u_A 256 QKKVTVVLDSM-YGTTHRMALALLDGARSTG-CETVLLE-MTS--------SDITKVALHTY--DSGAVAF-ASPTLNNT 321 (414)
T ss_dssp CSEEEEEECCS-SSHHHHHHHHHHHHHHHTT-CEEEEEE-GGG--------CCHHHHHHHHH--TCSEEEE-ECCCBTTB
T ss_pred CCeEEEEEECC-CchHHHHHHHHHHHHHhCC-CeEEEEE-cCc--------CCHHHHHHHHH--hCCEEEE-EcCccCcC
Confidence 56888888764 3421556677777777777 6554322 111 12334445555 5677777 544
Q ss_pred -hhHHHHHHHHHHHcCC-CCCCeEEEee
Q 006683 242 -LDMTIHLFTEANRMGL-VGKDSVWIVT 267 (635)
Q Consensus 242 -~~~~~~~l~~a~~~g~-~~~~~~~i~~ 267 (635)
+.....++.......+ .++....+.+
T Consensus 322 ~~~~~k~fld~l~~~~~~~~K~~~~~~t 349 (414)
T 2q9u_A 322 MMPSVAAALNYVRGLTLIKGKPAFAFGA 349 (414)
T ss_dssp CCHHHHHHHHHHHHHTTTTTSBEEEEEE
T ss_pred chHHHHHHHHHHHhhcccCCCEEEEEEe
Confidence 2456777777665444 4444444443
No 390
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A
Probab=21.51 E-value=5e+02 Score=24.52 Aligned_cols=134 Identities=13% Similarity=0.158 Sum_probs=75.2
Q ss_pred EEEEEEeeCCCcCcHHHHHHHHHHHHhHhcCCCCeEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHHHHH
Q 006683 35 TKIGAIVDANSQMGKQAITAMKIAVQNFNSDSRNHKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVA 114 (635)
Q Consensus 35 i~IG~i~p~s~~~g~~~~~a~~~Av~~iN~~~~g~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~ 114 (635)
-.|+.+|-..+ .....+|+.|+.++. |..+.+...++.-.-.+.+.-..+.++.- +++|+-=.. ....+.
T Consensus 40 k~l~~lF~e~S---TRTR~SFe~A~~~LG----g~~i~l~~~~ss~~kgEsl~DTarvls~~-~D~iviR~~--~~~~~~ 109 (307)
T 2i6u_A 40 RGVAVIFDKNS---TRTRFSFELGIAQLG----GHAVVVDSGSTQLGRDETLQDTAKVLSRY-VDAIVWRTF--GQERLD 109 (307)
T ss_dssp CEEEEEESSCC---SHHHHHHHHHHHHTT----CEEEEEEGGGSGGGGTCCHHHHHHHHHHH-EEEEEEECS--SHHHHH
T ss_pred CEEEEEecCCC---cchHHHHHHHHHHcC----CeEEEECCccccCCCCCCHHHHHHHHHHh-CCEEEEecC--ChhHHH
Confidence 46788886654 366788999998875 44566654443221112223333333222 343332111 233355
Q ss_pred HhhccCCccEEeecCCCCCCCCCCCCCceEEEEecCcHHHHHHHHHHH---HHCC---CeEEEEEEEcCCCCCCcchHHH
Q 006683 115 EIASRVQVPILSFAAPAVTPLSMSRRWPYLIRMASNDSEQMKCIADLA---RKYN---WRRVAAIYEDNVYGGDSGKLAL 188 (635)
Q Consensus 115 ~~~~~~~ip~Is~~~~~~~~~l~~~~~p~~~r~~p~~~~~~~al~~~l---~~~~---w~~vaii~~~~~~g~~~~~~~~ 188 (635)
.+++..++|+|+.+ + +...| .+++++++ +++| ..+|+++.+- . ...+..
T Consensus 110 ~lA~~~~vPVINa~-~-------~~~HP------------tQaLaDl~Ti~e~~g~l~gl~va~vGD~--~---~rva~S 164 (307)
T 2i6u_A 110 AMASVATVPVINAL-S-------DEFHP------------CQVLADLQTIAERKGALRGLRLSYFGDG--A---NNMAHS 164 (307)
T ss_dssp HHHHHCSSCEEESC-C-------SSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEESCT--T---SHHHHH
T ss_pred HHHhhCCCCEEcCC-C-------CCcCc------------cHHHHHHHHHHHHhCCcCCeEEEEECCC--C---cCcHHH
Confidence 56667789999743 1 22223 26677765 4554 3577777542 2 345777
Q ss_pred HHHHHhccCCeEEEEE
Q 006683 189 LAEALQNVSSSEIQSR 204 (635)
Q Consensus 189 ~~~~l~~~g~~~v~~~ 204 (635)
+...+...| .++...
T Consensus 165 l~~~~~~~g-~~v~~~ 179 (307)
T 2i6u_A 165 LLLGGVTAG-IHVTVA 179 (307)
T ss_dssp HHHHHHHTT-CEEEEE
T ss_pred HHHHHHHCC-CEEEEE
Confidence 888888889 777654
No 391
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=20.91 E-value=3.5e+02 Score=23.53 Aligned_cols=51 Identities=14% Similarity=0.106 Sum_probs=33.5
Q ss_pred eEEEEEEecCCCCHHHHHHHHHHHhhcCCeEEEEcCCChhhHHHHHHhhccCCccEEeecC
Q 006683 69 HKLSLQIRDHNRDPFQAATAAQELINKEKVKVIAGMETWEETAVVAEIASRVQVPILSFAA 129 (635)
Q Consensus 69 ~~l~~~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~~~~v~~~~~~~~ip~Is~~~ 129 (635)
.+++...+++..+.. ....++. ++|+.+|+|+.. +..+|++.|+|.+-..+
T Consensus 118 ~~i~~~~~~~~~e~~---~~i~~l~-~~G~~vvVG~~~------~~~~A~~~Gl~~vli~s 168 (196)
T 2q5c_A 118 VKIKEFLFSSEDEIT---TLISKVK-TENIKIVVSGKT------VTDEAIKQGLYGETINS 168 (196)
T ss_dssp CEEEEEEECSGGGHH---HHHHHHH-HTTCCEEEECHH------HHHHHHHTTCEEEECCC
T ss_pred CceEEEEeCCHHHHH---HHHHHHH-HCCCeEEECCHH------HHHHHHHcCCcEEEEec
Confidence 456666666555543 3444554 799999999543 35677888888775543
No 392
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=20.84 E-value=33 Score=31.42 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=14.7
Q ss_pred HHHHHHhhhhcCceEEEE
Q 006683 220 VRGELKKVQDKQSRVFIV 237 (635)
Q Consensus 220 ~~~~l~~l~~~~~~vii~ 237 (635)
..+.++.+.+...|+++.
T Consensus 168 ~~~~~~~l~~G~vDa~~~ 185 (268)
T 3qax_A 168 TLEVIMEVRYGKSPVAVL 185 (268)
T ss_dssp HHHHHHHHHTTSSSEEEE
T ss_pred HHHHHHHHHcCCCCEEEe
Confidence 457788888889999887
No 393
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=20.80 E-value=1.2e+02 Score=31.34 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=11.4
Q ss_pred HHHHHHHHhhhhcCc
Q 006683 218 EAVRGELKKVQDKQS 232 (635)
Q Consensus 218 ~~~~~~l~~l~~~~~ 232 (635)
.++.+.++++++..+
T Consensus 186 del~~~~~~~k~~~p 200 (535)
T 3omb_A 186 DELENVLKAFKTQDP 200 (535)
T ss_dssp HHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHhhCC
Confidence 678888888887644
No 394
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=20.69 E-value=2.7e+02 Score=26.65 Aligned_cols=78 Identities=12% Similarity=0.049 Sum_probs=48.9
Q ss_pred CeEEEEEEEcCCCCCC-cchHHHHHHHHhccCCeEEEEEeeeCCCCCCCCchHHHHHHHHhhhhcCceEEEEecCChhHH
Q 006683 167 WRRVAAIYEDNVYGGD-SGKLALLAEALQNVSSSEIQSRLVLPPISSISDPKEAVRGELKKVQDKQSRVFIVLQASLDMT 245 (635)
Q Consensus 167 w~~vaii~~~~~~g~~-~~~~~~~~~~l~~~g~~~v~~~~~~~~~~~~~d~~~~~~~~l~~l~~~~~~vii~~~~~~~~~ 245 (635)
.+++.+|+....-+.+ ....+.+.+.+++.| +.+..... ... .+.....+++...++|.|++ .+.-...
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g-~~~~~~~t--~~~------~~a~~~~~~~~~~~~d~vvv-~GGDGTv 93 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKRELPDALIKLEKAG-YETSAYAT--EKI------GDATLEAERAMHENYDVLIA-AGGDGTL 93 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHHHHHHHHHHHTT-EEEEEEEC--CST------THHHHHHHHHTTTTCSEEEE-EECHHHH
T ss_pred cceEEEEECCCCCCCchHHHHHHHHHHHHHcC-CeEEEEEe--cCc------chHHHHHHHHhhcCCCEEEE-EcCchHH
Confidence 4788888865442100 134567888888899 77654432 111 23445556666667888888 7777777
Q ss_pred HHHHHHHHH
Q 006683 246 IHLFTEANR 254 (635)
Q Consensus 246 ~~~l~~a~~ 254 (635)
..++..+.+
T Consensus 94 ~~v~~~l~~ 102 (337)
T 2qv7_A 94 NEVVNGIAE 102 (337)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 777777743
No 395
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ...
Probab=20.67 E-value=1.1e+02 Score=29.57 Aligned_cols=41 Identities=12% Similarity=0.016 Sum_probs=29.2
Q ss_pred eHHHHHHHHHHC---CCcccEEEecCCCChhhHHHHHHcCcccEEEe
Q 006683 491 SIELFRLVVDHL---NYDLPYEFVPHDGVYDDLINGVYDKTYDAAVG 534 (635)
Q Consensus 491 ~~dl~~~la~~l---~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~ 534 (635)
|-+|.+.+...+ +.+++.+... +..+++..|.+|++|++..
T Consensus 19 C~~l~~~~~~~~~~~~~~vecv~~~---dy~~ci~ai~~g~aD~~~l 62 (327)
T 1ryo_A 19 CQSFRDHMKSVIPSDGPSVACVKKA---SYLDCIRAIAANEADAVTL 62 (327)
T ss_dssp HHHHHHHHHHHSCTTSCEEEEEEES---SHHHHHHHHHTTSCCBEEE
T ss_pred HHHHHHHHhhccccCCCceEEEecC---CHHHHHHHHHcCCCcEEEe
Confidence 345555554555 5665555554 5999999999999999875
No 396
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=20.57 E-value=1.4e+02 Score=28.26 Aligned_cols=70 Identities=10% Similarity=0.030 Sum_probs=43.0
Q ss_pred HHHHHHHHHHCCCcccEEEecCCCChhhHHHHHHcCcccEEEeccccc------c--cccccccccccceeeeeEEEEeC
Q 006683 492 IELFRLVVDHLNYDLPYEFVPHDGVYDDLINGVYDKTYDAAVGDLTIL------G--NRTEYVEFTQPYAESGFSMIVPA 563 (635)
Q Consensus 492 ~dl~~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~------~--~r~~~~~fs~p~~~~~~~~~v~~ 563 (635)
..+++.+-+.+|++++++... +-.-+...|.+|++|+........ . +..+......-.....+.++||+
T Consensus 24 ~~i~~~~Le~~Gy~Ve~~~~~---~~~~~~~Al~~G~iDi~~e~w~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~V~~ 100 (309)
T 1r9l_A 24 TLLVSRALEKLGYTVNKPSEV---DYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKKFYREGVFVNGAAQGYLIDK 100 (309)
T ss_dssp HHHHHHHHHHTTCEECCCEEC---CHHHHHHHHHHTSSCEEEEEEETTTHHHHHHTTGGGTEEECSCSEEEEEEEEEEEH
T ss_pred HHHHHHHHHHcCCCeEEeecC---chHHHHHHHhcCCceEEeccccCccHHHHHHhhcCCcEEEecccCCCceEEEEEch
Confidence 466667777789986654211 256688899999999986432221 1 11233344332345678999988
Q ss_pred C
Q 006683 564 K 564 (635)
Q Consensus 564 ~ 564 (635)
.
T Consensus 101 ~ 101 (309)
T 1r9l_A 101 K 101 (309)
T ss_dssp H
T ss_pred h
Confidence 5
No 397
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=20.40 E-value=1.8e+02 Score=28.15 Aligned_cols=64 Identities=13% Similarity=0.219 Sum_probs=40.3
Q ss_pred EEEEEeeCCCcCcHH-HHHHHHHHHHhHhcCCCCeEEEEEEecCC--------CCHHHHHHHHHHHhhcCCeEEEEc
Q 006683 36 KIGAIVDANSQMGKQ-AITAMKIAVQNFNSDSRNHKLSLQIRDHN--------RDPFQAATAAQELINKEKVKVIAG 103 (635)
Q Consensus 36 ~IG~i~p~s~~~g~~-~~~a~~~Av~~iN~~~~g~~l~~~~~D~~--------~~~~~a~~~~~~li~~~~v~aiiG 103 (635)
+||++.|.++..+.. ....++.|++.+.+. |+++.+ ..+. +++..-++.+.+++.++.|.+|+-
T Consensus 7 ~I~ivaPSs~~~~~~~~~~~~~~~~~~L~~~--G~~v~~--~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~ 79 (346)
T 4eys_A 7 TIGIVSLSSGIIGEDFVKHEVDLGIQRLKDL--GLNPIF--LPHSLKGLDFIKDHPEARAEDLIHAFSDDSIDMILC 79 (346)
T ss_dssp EEEEECSSCCGGGSGGGHHHHHHHHHHHHHT--TCEEEE--CTTTTSCHHHHHHCHHHHHHHHHHHHHCTTCCEEEE
T ss_pred EEEEEeCCCcccccccCHHHHHHHHHHHHhC--CCEEEE--CCchhccCCccCCCHHHHHHHHHHHhhCCCCCEEEE
Confidence 699999998643321 345688889888876 455544 2221 344444555666666778888773
Done!