Query 006685
Match_columns 635
No_of_seqs 166 out of 252
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 13:00:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006685.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006685hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09731 Mitofilin: Mitochondr 100.0 1.6E-59 3.5E-64 515.1 50.4 351 268-630 208-582 (582)
2 KOG1854 Mitochondrial inner me 100.0 3.5E-38 7.5E-43 345.3 36.5 282 347-634 342-653 (657)
3 COG4223 Uncharacterized protei 99.9 3.1E-22 6.7E-27 208.0 19.6 297 294-629 121-419 (422)
4 PF09731 Mitofilin: Mitochondr 96.5 0.51 1.1E-05 53.5 22.7 57 397-456 368-424 (582)
5 KOG1029 Endocytic adaptor prot 87.5 45 0.00097 40.5 19.0 48 501-553 472-519 (1118)
6 PRK06569 F0F1 ATP synthase sub 86.2 37 0.0008 33.5 16.5 53 330-382 53-106 (155)
7 PRK09174 F0F1 ATP synthase sub 84.9 44 0.00095 34.0 15.5 26 329-354 95-120 (204)
8 PF06705 SF-assemblin: SF-asse 82.5 63 0.0014 33.2 21.6 28 416-443 161-188 (247)
9 PF06705 SF-assemblin: SF-asse 79.6 79 0.0017 32.5 23.2 36 416-451 132-167 (247)
10 PRK08476 F0F1 ATP synthase sub 75.5 76 0.0016 30.2 14.5 27 328-354 48-74 (141)
11 KOG0977 Nuclear envelope prote 74.5 1.6E+02 0.0035 34.6 17.3 181 306-492 177-388 (546)
12 KOG4460 Nuclear pore complex, 74.1 1.4E+02 0.0031 35.2 16.5 47 402-449 635-681 (741)
13 PRK00409 recombination and DNA 73.9 1.5E+02 0.0032 36.0 17.5 19 563-581 708-726 (782)
14 PLN03229 acetyl-coenzyme A car 67.0 3E+02 0.0066 33.6 19.5 27 515-541 665-691 (762)
15 KOG0163 Myosin class VI heavy 66.7 2E+02 0.0044 35.3 16.0 32 118-149 526-563 (1259)
16 TIGR01069 mutS2 MutS2 family p 64.5 2.2E+02 0.0047 34.6 16.3 20 563-582 697-716 (771)
17 PF11932 DUF3450: Protein of u 61.3 2E+02 0.0044 29.6 15.7 38 311-350 26-64 (251)
18 PF09726 Macoilin: Transmembra 59.9 3.8E+02 0.0083 32.4 20.8 16 458-473 588-603 (697)
19 KOG2391 Vacuolar sorting prote 59.2 3E+02 0.0064 30.8 16.3 53 471-530 293-345 (365)
20 KOG2391 Vacuolar sorting prote 57.6 2.8E+02 0.0061 31.0 14.2 24 357-380 211-234 (365)
21 PF10146 zf-C4H2: Zinc finger- 56.9 2.5E+02 0.0055 29.3 13.5 84 390-489 19-103 (230)
22 KOG1029 Endocytic adaptor prot 54.6 5.1E+02 0.011 32.2 19.3 11 269-279 229-239 (1118)
23 KOG0161 Myosin class II heavy 54.0 7.2E+02 0.016 33.7 23.5 37 321-357 957-993 (1930)
24 PF05667 DUF812: Protein of un 51.7 3.1E+02 0.0067 32.5 14.4 48 432-491 389-436 (594)
25 PF14223 UBN2: gag-polypeptide 51.0 1.5E+02 0.0033 26.5 9.4 58 475-532 39-113 (119)
26 PRK06568 F0F1 ATP synthase sub 50.3 2.6E+02 0.0057 27.5 16.2 23 330-352 47-69 (154)
27 KOG0742 AAA+-type ATPase [Post 49.9 4.8E+02 0.01 30.5 17.5 77 387-463 201-292 (630)
28 PRK13428 F0F1 ATP synthase sub 49.3 4.4E+02 0.0095 29.9 23.3 24 329-352 43-66 (445)
29 CHL00019 atpF ATP synthase CF0 48.4 2.8E+02 0.0061 27.3 17.8 24 329-352 66-89 (184)
30 PTZ00121 MAEBL; Provisional 44.8 9.2E+02 0.02 32.3 23.5 6 250-255 1023-1028(2084)
31 PF11932 DUF3450: Protein of u 43.5 3.9E+02 0.0084 27.5 16.6 17 466-482 111-127 (251)
32 PRK06231 F0F1 ATP synthase sub 42.9 3.8E+02 0.0082 27.2 17.8 25 328-352 89-113 (205)
33 PF07111 HCR: Alpha helical co 41.3 7.5E+02 0.016 30.3 20.3 27 385-411 132-158 (739)
34 PF00430 ATP-synt_B: ATP synth 41.2 2.7E+02 0.0059 25.1 10.9 26 327-352 39-64 (132)
35 PF12128 DUF3584: Protein of u 40.7 8.9E+02 0.019 30.9 25.5 24 510-533 763-788 (1201)
36 CHL00118 atpG ATP synthase CF0 38.4 3.7E+02 0.008 25.8 14.4 25 328-352 63-87 (156)
37 PRK13455 F0F1 ATP synthase sub 37.6 4.1E+02 0.0089 26.1 19.3 21 330-350 70-90 (184)
38 PF00901 Orbi_VP5: Orbivirus o 37.1 7.5E+02 0.016 29.0 19.2 75 400-480 157-232 (508)
39 PF08826 DMPK_coil: DMPK coile 36.9 2.6E+02 0.0057 23.7 8.0 20 324-343 6-26 (61)
40 TIGR03321 alt_F1F0_F0_B altern 36.6 5E+02 0.011 26.8 15.4 22 329-350 47-68 (246)
41 PRK14472 F0F1 ATP synthase sub 36.5 4.1E+02 0.009 25.9 14.5 25 328-352 59-83 (175)
42 CHL00118 atpG ATP synthase CF0 36.3 4E+02 0.0086 25.6 15.6 67 362-432 72-138 (156)
43 KOG1265 Phospholipase C [Lipid 35.3 1E+03 0.023 30.1 16.9 34 30-67 737-770 (1189)
44 TIGR03321 alt_F1F0_F0_B altern 34.8 5.3E+02 0.012 26.6 14.5 6 520-525 190-195 (246)
45 COG3118 Thioredoxin domain-con 34.7 2.2E+02 0.0047 31.2 9.0 112 494-618 84-212 (304)
46 PRK13460 F0F1 ATP synthase sub 34.4 4.5E+02 0.0097 25.6 17.8 24 329-352 58-81 (173)
47 KOG0161 Myosin class II heavy 34.2 1.4E+03 0.03 31.3 20.6 24 363-386 1033-1056(1930)
48 PTZ00121 MAEBL; Provisional 34.2 1.3E+03 0.028 31.0 21.7 13 287-299 1091-1103(2084)
49 PF13432 TPR_16: Tetratricopep 33.4 1.3E+02 0.0028 23.5 5.5 44 573-618 1-44 (65)
50 COG4487 Uncharacterized protei 33.0 8.2E+02 0.018 28.3 17.6 74 368-441 111-186 (438)
51 PRK13453 F0F1 ATP synthase sub 33.0 4.8E+02 0.01 25.5 17.8 24 329-352 60-83 (173)
52 PRK14473 F0F1 ATP synthase sub 32.7 4.6E+02 0.0099 25.2 17.9 25 328-352 49-73 (164)
53 PLN03086 PRLI-interacting fact 32.0 2.5E+02 0.0054 33.2 9.6 19 336-354 4-22 (567)
54 PRK08475 F0F1 ATP synthase sub 31.5 5.1E+02 0.011 25.4 12.8 24 329-352 64-87 (167)
55 PF14559 TPR_19: Tetratricopep 31.1 95 0.002 24.3 4.4 36 566-602 22-57 (68)
56 PRK14471 F0F1 ATP synthase sub 30.6 4.9E+02 0.011 25.0 14.5 24 329-352 50-73 (164)
57 PF12004 DUF3498: Domain of un 30.2 17 0.00037 41.7 0.0 33 372-404 405-437 (495)
58 KOG2668 Flotillins [Intracellu 29.9 8.7E+02 0.019 27.6 19.6 39 399-442 269-307 (428)
59 KOG1103 Predicted coiled-coil 29.6 8.8E+02 0.019 27.6 16.6 23 359-381 134-156 (561)
60 TIGR02284 conserved hypothetic 29.2 3.8E+02 0.0083 25.5 8.8 59 527-592 48-120 (139)
61 TIGR01837 PHA_granule_1 poly(h 29.1 4.6E+02 0.01 24.5 9.2 11 309-319 8-18 (118)
62 PRK13454 F0F1 ATP synthase sub 28.4 5.9E+02 0.013 25.2 17.1 24 329-352 73-96 (181)
63 PF07721 TPR_4: Tetratricopept 28.4 89 0.0019 21.3 3.3 23 571-593 3-25 (26)
64 KOG1118 Lysophosphatidic acid 27.5 9.1E+02 0.02 27.0 14.3 49 302-350 100-148 (366)
65 KOG0612 Rho-associated, coiled 26.4 1.6E+03 0.034 29.4 21.1 12 544-555 828-839 (1317)
66 KOG1854 Mitochondrial inner me 26.3 1.2E+03 0.027 28.2 18.7 16 435-450 466-481 (657)
67 PRK14475 F0F1 ATP synthase sub 26.2 6.1E+02 0.013 24.6 19.5 25 328-352 51-75 (167)
68 PF04010 DUF357: Protein of un 26.1 1.9E+02 0.004 25.3 5.6 35 570-614 36-70 (75)
69 COG0711 AtpF F0F1-type ATP syn 25.7 6.3E+02 0.014 24.6 19.4 24 329-352 48-71 (161)
70 PF07111 HCR: Alpha helical co 24.9 1.4E+03 0.029 28.2 18.9 54 327-381 470-524 (739)
71 PRK14471 F0F1 ATP synthase sub 24.6 6.3E+02 0.014 24.2 15.6 14 419-432 111-124 (164)
72 PRK14472 F0F1 ATP synthase sub 23.7 6.9E+02 0.015 24.3 19.3 13 365-377 71-83 (175)
73 PRK09174 F0F1 ATP synthase sub 23.4 8E+02 0.017 25.0 16.3 9 419-427 156-164 (204)
74 PRK14474 F0F1 ATP synthase sub 23.3 8.7E+02 0.019 25.4 17.7 120 309-429 28-149 (250)
75 KOG0163 Myosin class VI heavy 23.3 1.6E+03 0.034 28.3 19.6 45 335-379 896-943 (1259)
76 PRK07352 F0F1 ATP synthase sub 22.9 7.1E+02 0.015 24.2 14.5 93 314-406 55-150 (174)
77 KOG2911 Uncharacterized conser 22.9 1.2E+03 0.026 26.9 18.0 99 446-551 303-405 (439)
78 PRK00106 hypothetical protein; 22.7 1.3E+03 0.028 27.2 21.2 13 421-433 151-163 (535)
79 KOG0577 Serine/threonine prote 22.5 1.4E+03 0.03 28.2 13.1 60 337-396 793-860 (948)
80 PRK10780 periplasmic chaperone 22.0 7.3E+02 0.016 24.0 12.8 13 333-345 55-67 (165)
81 PF02646 RmuC: RmuC family; I 21.9 6.4E+02 0.014 27.0 9.9 29 564-592 210-238 (304)
82 PRK09173 F0F1 ATP synthase sub 21.8 7.1E+02 0.015 23.8 14.4 93 314-406 38-133 (159)
83 KOG0982 Centrosomal protein Nu 21.8 1.3E+03 0.028 26.9 16.7 64 387-455 298-364 (502)
84 PRK08475 F0F1 ATP synthase sub 21.6 7.7E+02 0.017 24.1 15.6 9 398-406 112-120 (167)
85 PRK15363 pathogenicity island 21.3 2.7E+02 0.0058 27.7 6.4 70 563-634 28-98 (157)
86 PRK14475 F0F1 ATP synthase sub 21.2 7.6E+02 0.017 23.9 16.4 24 325-348 59-82 (167)
87 KOG3054 Uncharacterized conser 21.2 9.4E+02 0.02 26.1 10.5 17 387-403 145-161 (299)
88 PF05283 MGC-24: Multi-glycosy 21.2 1.3E+02 0.0029 30.6 4.3 19 62-80 163-181 (186)
89 PRK14161 heat shock protein Gr 20.6 8.8E+02 0.019 24.4 10.5 17 302-318 4-20 (178)
90 TIGR02795 tol_pal_ybgF tol-pal 20.4 2.7E+02 0.0058 23.3 5.5 56 569-625 39-96 (119)
91 PF00038 Filament: Intermediat 20.4 9.9E+02 0.021 24.9 22.0 28 325-352 121-148 (312)
No 1
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=100.00 E-value=1.6e-59 Score=515.10 Aligned_cols=351 Identities=32% Similarity=0.464 Sum_probs=298.1
Q ss_pred cchhhhhhccccccccCCCcchhhhhhhhhhhhcccc--cCCcHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 006685 268 PASLLDAYHLRDKIDEGIDKATEDFINVMEELNNGYL--SKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYE 345 (635)
Q Consensus 268 ~~sl~~~y~l~~~~~~~~~~~~e~~~~~~~~~~~~~~--~~~~k~~ld~i~Ai~aaek~Qae~Da~~f~eel~kl~~kye 345 (635)
-+.+++.|+..+..+.....+..-.-+.+..++++.+ .+++.++.++...|+...+..++++.....+..+.|+.+++
T Consensus 208 ~~~i~~~~~~~~~~~~~~~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~ 287 (582)
T PF09731_consen 208 LPKIVEEYKELVEEEPEVQELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKEEEEEELERALEEQRE 287 (582)
T ss_pred hhhhhhhhhhhhhhhhhHHHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778889988776665552111111144556677888 78899999999999999999999999989999999999988
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-----
Q 006685 346 KELRDSRARELMR-----TEEAAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKA----- 415 (635)
Q Consensus 346 ~eL~d~aA~el~~-----~~~aa~l~~efE~Er~kla~a~K~l~e~~EekLk~ELeqvE~EregrL~kL~elakA----- 415 (635)
..+...+....++ ......|+.+|++++.++.. .++++|+.+|+++++..+.+|.+.......
T Consensus 288 e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~~~l~~-------~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~e~~~~ 360 (582)
T PF09731_consen 288 ELLSKLREELEQELEEKRAELEEELREEFEREREELEE-------KYEEELRQELKRQEEAHEEHLKNELREQAIELQRE 360 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6566544443332 23446788888888888555 455566666665555555555444333222
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CChHHHHHHHH
Q 006685 416 ---EIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRG-----LPIQKEIDTLY 487 (635)
Q Consensus 416 ---El~e~ia~ERv~~LekL~eln~rv~aL~~Av~arse~arks~~v~kLaLAa~ALk~AL~sg-----~Pf~~EL~aLk 487 (635)
+++++|++||.+++.+|++++.+|++|+.+++.+++..+.++++|+||++|.+|++++.+| .||..||.+|+
T Consensus 361 ~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~~~~~~~~~~~l~~a~~~l~~~l~~~~~~~~~p~~~el~~l~ 440 (582)
T PF09731_consen 361 FEKEIKEKVEQERNGRLAKLAELNSRLKALEEALDARSEAEDENRRAQQLWLAVDALKSALDSGNAGSPRPFEDELRALK 440 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred hhhcCCCCchhHHHHHhcCchhHhhcCCCCHHHHHHHHHHHHHHHhHhhcCCCCCCCHHHHHHHHHhhhcccc-cc---C
Q 006685 488 TYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVK-EA---D 563 (635)
Q Consensus 488 ~la~g~~~D~lV~aaLsSLp~~aae~GVpT~aqL~~RF~~Va~~~RraSLVPe~gaGll~hllS~l~S~L~fK-~G---~ 563 (635)
.++ ++|++|+++|++||+.+.++||+|.++|++||+.|++.||+++||||+|+||++|++||++|+|+|+ .+ +
T Consensus 441 ~~~---~~d~~v~~~l~~l~~~a~~~Gv~s~~~L~~rf~~v~~~~r~~~l~~~~~~g~~~~~~s~~~S~l~~~~~~~~~~ 517 (582)
T PF09731_consen 441 ELA---PDDELVDAALSSLPPEAAQRGVPSEAQLRNRFERVAPEVRRASLVPPEGAGLLGHLLSYLFSLLLFRPKGGEVD 517 (582)
T ss_pred HhC---CCChHHHHHHHhcCHHHhhCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHheeeeecCCCCCC
Confidence 997 4899999999999999999999999999999999999999999998877999999999999999997 54 5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006685 564 QANDGIESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAITEQGLTFLQSYAT 630 (635)
Q Consensus 564 ~~GdDveSILARAE~~L~~GDLd~AarELen~L~Gw~Ar~lA~DWL~eAR~RLEVeQAldvL~A~Aa 630 (635)
+.|+|+++||+||++||.+|||+.|+++| |+|+|| |+.+|.|||++||+|||++|++++|.+||+
T Consensus 518 ~~~~d~~~ilarae~~l~~gdL~~A~~~~-~~L~g~-~~~~a~dW~~~ar~~le~~q~~~~l~a~a~ 582 (582)
T PF09731_consen 518 PEGDDVESILARAEYYLERGDLDKAAREL-NQLKGW-ARKLAADWLKEARRRLEVEQALEVLEAHAA 582 (582)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHH-HhCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 79999999999999999999999999999 799999 999999999999999999999999999985
No 2
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=3.5e-38 Score=345.29 Aligned_cols=282 Identities=23% Similarity=0.331 Sum_probs=229.6
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH----HHHHHhhHHH----H
Q 006685 347 ELRDSRARELMRTE----EAAILEKELKRERAKAAATIKSLQEKMEEKLRMELE----QKE----NEAESKLKNA----L 410 (635)
Q Consensus 347 eL~d~aA~el~~~~----~aa~l~~efE~Er~kla~a~K~l~e~~EekLk~ELe----qvE----~EregrL~kL----~ 410 (635)
+|+-.+|.|-.+-. -.+++.+|++..+.+++.....+-+.+..++++||. ++. ..-...+..- .
T Consensus 342 ~~~~~~aiEk~Rl~~~~a~~~~~~~~~~~h~~~~~~E~~~~~~~~~~~~~~el~~ql~~qa~ah~dhik~vvr~q~q~~~ 421 (657)
T KOG1854|consen 342 ELHIKRAIEKQRLQDSRALRAQLEYELEAHRRELQQELFKLIEEIRSSSKNELRNQLKRQAKAHLDHIKDVVRQQEQLLT 421 (657)
T ss_pred HHHHHHHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455444322 235566777777777777765555556666666552 211 1111111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC------CChHHHHH
Q 006685 411 ELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRG------LPIQKEID 484 (635)
Q Consensus 411 elakAEl~e~ia~ERv~~LekL~eln~rv~aL~~Av~arse~arks~~v~kLaLAa~ALk~AL~sg------~Pf~~EL~ 484 (635)
--++.++.+++.+||+-+-.+++-+-.++.++..||-.+......+...++||++|.+|++.+..| .|+...+.
T Consensus 422 ~e~~~~~~e~~l~ernl~~~qvg~aL~rLrgie~aL~~~~~~~~e~r~a~q~w~ac~nlk~s~~~g~~e~r~~pLg~~vn 501 (657)
T KOG1854|consen 422 IEFKQKLEEAVLQERNLHSSQVGKALSRLRGIEQALQERVRAELEARKAKQLWLACSNLKDSLNKGHYEMRRHPLGKHVN 501 (657)
T ss_pred HHHHHHHHHHHHHHhcchHhHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhccccccccCchhHHHH
Confidence 113447899999999999999999999999999999999988888888899999999999999665 69999999
Q ss_pred HHHhhhcCCCCchhHHHHHhcCchhHhhcCCCCHHHHHHHHHHHHHHHhHhhcCCCCCCCHHHHHHHHHhhhcccc--c-
Q 006685 485 TLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHIASWLKVK--E- 561 (635)
Q Consensus 485 aLk~la~g~~~D~lV~aaLsSLp~~aae~GVpT~aqL~~RF~~Va~~~RraSLVPe~gaGll~hllS~l~S~L~fK--~- 561 (635)
+++..+ ++|+||.+++.+||+.+..+||+|.++|++||+.|.+.+|+++|||++||++..|++| ++|+|+|+ .
T Consensus 502 ~~k~~~---~~delv~a~~~~ipk~~~~rgiysee~L~~RF~~l~ki~rr~a~l~e~gg~lg~yf~s-l~Slfl~~~~q~ 577 (657)
T KOG1854|consen 502 ALKEVT---KDDELVAAALDSIPKEADTRGIYSEEDLRNRFNTLSKIARRTALLPEEGGFLGQYFLS-LQSLFLLSPQQL 577 (657)
T ss_pred HHhccC---CcHHHHHHHHHhcccccccCCCCCHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHH-hhhheeecHhhc
Confidence 998887 5899999999999999999999999999999999999999999999996655666666 99999996 2
Q ss_pred c-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 006685 562 A-----DQANDGIESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAITEQGLTFLQSYATCLSI 634 (635)
Q Consensus 562 G-----~~~GdDveSILARAE~~L~~GDLd~AarELen~L~Gw~Ar~lA~DWL~eAR~RLEVeQAldvL~A~Aal~sL 634 (635)
| +|...|.+.||+||+|||..|||+.|+|+| |+|+|| ||.||.|||++||++||++|++++|.|||+++|+
T Consensus 578 g~~~~~~p~~~d~~~iLsrA~~~~~~gdl~~Avr~v-~lLkG~-pr~va~dWi~daRr~lE~qql~eiL~AhAa~ssi 653 (657)
T KOG1854|consen 578 GNPVFLDPNITDTYKILSRARYHLLKGDLDDAVRVV-NLLKGW-PRKVARDWIKDARRRLETQQLVEILKAHAAASSI 653 (657)
T ss_pred CCCccCCcccccHHHHHHHHHHHHhcccHHHHHHHH-HHhccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3 567889999999999999999999999999 899999 9999999999999999999999999999999987
No 3
>COG4223 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.89 E-value=3.1e-22 Score=207.96 Aligned_cols=297 Identities=22% Similarity=0.195 Sum_probs=212.3
Q ss_pred hhhhhhhcccccCCcHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 006685 294 NVMEELNNGYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEE-AAILEKELKRE 372 (635)
Q Consensus 294 ~~~~~~~~~~~~~~~k~~ld~i~Ai~aaek~Qae~Da~~f~eel~kl~~kye~eL~d~aA~el~~~~~-aa~l~~efE~E 372 (635)
-..++++..+|. +|.|.|-..++++++...-+.---.....|...|+.+.... +. ...... ++-...-||..
T Consensus 121 ~~~~g~iaAgi~-gg~IAla~ag~Lq~ag~v~apg~~~a~~~e~a~l~seiagl-k~-----~g~a~~~Aapd~s~leqr 193 (422)
T COG4223 121 AGGEGVIAAGID-GGLIALAGAGALQYAGRVPAPGVGDAGLLEIAFLKSEIAGL-KW-----FGPANAPAAPDSSGLEQR 193 (422)
T ss_pred cCcccceecccc-cceeeccCcchhhhccccCCCCCccchhHHHHHHHHHHHHH-HH-----hccccCccCcccchhHHh
Confidence 447888998888 99999999999999887755332233566666666654422 11 010000 01011122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006685 373 RAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEE 452 (635)
Q Consensus 373 r~kla~a~K~l~e~~EekLk~ELeqvE~EregrL~kL~elakAEl~e~ia~ERv~~LekL~eln~rv~aL~~Av~arse~ 452 (635)
..-+.+.... - --++++ ++..-.-|.++. ..+-.||-..+....+++.||.+|+..+...+..
T Consensus 194 iaal~aa~~~---p-----~p~v~a-l~~avtal~~~~--------salp~ersta~Aa~ael~gRiaalEqs~ne~ad~ 256 (422)
T COG4223 194 IAALEAASAE---P-----APRVKA-LEVAVTALLPLE--------SALPAERSTALAAVAELNGRIAALEQSLNEPADD 256 (422)
T ss_pred hhhhhhhhcC---C-----CCchhH-HHHHHHhccchh--------hccchhhhhHHHHHHHHhhhHHHHHHHhccchhH
Confidence 1111111000 0 000000 111111222222 2333456666666677777888777776654332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHhhhcCCCCchhHHHHHhcCchhHhhcCCCCHHHHHHHHHHHHHHH
Q 006685 453 ARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKGTL 532 (635)
Q Consensus 453 arks~~v~kLaLAa~ALk~AL~sg~Pf~~EL~aLk~la~g~~~D~lV~aaLsSLp~~aae~GVpT~aqL~~RF~~Va~~~ 532 (635)
.. ..+++++.+|+.++++|.||..||++|..+++ +||-|. +|.+ ++.+||||+.+|..+|..|++.+
T Consensus 257 ie-----aA~aiaatalKtAidrggPF~aELdtL~~VaP---~dP~l~----~L~~-~A~tGvPTRaeL~~qF~~~Anam 323 (422)
T COG4223 257 IE-----AALAIAATALKTAIDRGGPFLAELDTLESVAP---GDPALA----ALRP-YAATGVPTRAELATQFGAVANAM 323 (422)
T ss_pred HH-----HHHHHHHHHHHHHHhcCCCchHHHhhHhhhCC---CChhhH----HhhH-HHhcCCCcHHHHHHHHHHHHHHH
Confidence 22 23567889999999999999999999999985 788655 5665 77999999999999999999999
Q ss_pred hHhhcCCCCCCCHHHHHHHHHhhhccccc-cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHH
Q 006685 533 RHFSLIPPGGGGILTHSLAHIASWLKVKE-ADQANDGIESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRR 611 (635)
Q Consensus 533 RraSLVPe~gaGll~hllS~l~S~L~fK~-G~~~GdDveSILARAE~~L~~GDLd~AarELen~L~Gw~Ar~lA~DWL~e 611 (635)
..++.-|+-++|||.++++.++|++.||+ |+++|.+++..++|+|..|++|||+.|+-|| |+|+.. +|.+..||...
T Consensus 324 vsA~~~pd~nagl~~rL~~Sa~slVsVRpVGsveG~t~~a~iARmEa~L~~GDl~gA~~ew-d~Lpea-aKaa~a~f~~~ 401 (422)
T COG4223 324 VSASNNPDPNAGLFDRLRSSASSLVSVRPVGSVEGSTPDAMIARMEAALDNGDLEGAVLEW-DSLPEA-AKAASADFAVK 401 (422)
T ss_pred HHhccCCCCCchHHHHHHHHHhcceeeeeccccCCCCcchHHHHHHHHHhccchHhHHHhh-ccCcHH-HHHhhhhHHHH
Confidence 99998887779999999999999999986 7999999999999999999999999999999 799998 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006685 612 ARNRAITEQGLTFLQSYA 629 (635)
Q Consensus 612 AR~RLEVeQAldvL~A~A 629 (635)
..+|++|+..++.+.+.+
T Consensus 402 l~aRieve~~V~a~va~a 419 (422)
T COG4223 402 LKARIEVETLVDALVADA 419 (422)
T ss_pred HHhhhhHHHHHHHHHhhh
Confidence 999999999999887654
No 4
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=96.48 E-value=0.51 Score=53.47 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=39.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 006685 397 QKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKS 456 (635)
Q Consensus 397 qvE~EregrL~kL~elakAEl~e~ia~ERv~~LekL~eln~rv~aL~~Av~arse~arks 456 (635)
++++||.+|+++|.++. ..+..- .+-..........+.++++||.|+.+....+...
T Consensus 368 ~v~~Er~~~~~~l~~~~-~~~~~l--e~~~~~~~~~~~~~~~~~~l~~a~~~l~~~l~~~ 424 (582)
T PF09731_consen 368 KVEQERNGRLAKLAELN-SRLKAL--EEALDARSEAEDENRRAQQLWLAVDALKSALDSG 424 (582)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 36899999999998874 112111 1123334444578889999999999987776665
No 5
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.49 E-value=45 Score=40.51 Aligned_cols=48 Identities=21% Similarity=0.274 Sum_probs=26.9
Q ss_pred HHHhcCchhHhhcCCCCHHHHHHHHHHHHHHHhHhhcCCCCCCCHHHHHHHHH
Q 006685 501 LVLSSLPEETRYHGTETLLQLNQKFDALKGTLRHFSLIPPGGGGILTHSLAHI 553 (635)
Q Consensus 501 aaLsSLp~~aae~GVpT~aqL~~RF~~Va~~~RraSLVPe~gaGll~hllS~l 553 (635)
.+|..+.. ..+.-+.+..+|..|.......+.+ |+|+- -.|.|=+-..
T Consensus 472 t~ie~~~~-q~e~~isei~qlqarikE~q~kl~~--l~~Ek--q~l~~qlkq~ 519 (1118)
T KOG1029|consen 472 TEIEEVTK-QRELMISEIDQLQARIKELQEKLQK--LAPEK--QELNHQLKQK 519 (1118)
T ss_pred HHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHh--hhhHH--HHHHHHHHHh
Confidence 34444443 3355567777888888776666543 45554 3555544333
No 6
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=86.16 E-value=37 Score=33.52 Aligned_cols=53 Identities=17% Similarity=0.331 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 330 GRAFAEEKRALKEKYEKELRDSRAR-ELMRTEEAAILEKELKRERAKAAATIKS 382 (635)
Q Consensus 330 a~~f~eel~kl~~kye~eL~d~aA~-el~~~~~aa~l~~efE~Er~kla~a~K~ 382 (635)
|...+++...++.+|+.+|.+.++. .-++.+-.+.+..+++.+|.++.+.++.
T Consensus 53 Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~ 106 (155)
T PRK06569 53 ADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLIKKKNLEQDLKN 106 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6668889999999999999996655 3455555677888888888887776554
No 7
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=84.86 E-value=44 Score=33.97 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 329 DGRAFAEEKRALKEKYEKELRDSRAR 354 (635)
Q Consensus 329 Da~~f~eel~kl~~kye~eL~d~aA~ 354 (635)
++...+.+...+..+|+++|.+.+..
T Consensus 95 ~Ae~~k~eAe~~~~~ye~~L~~Ar~e 120 (204)
T PRK09174 95 QAARLKQEADAAVAAYEQELAQARAK 120 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36667788888888888888885543
No 8
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=82.47 E-value=63 Score=33.22 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 416 EIAASIAREKVAQIEKMAEANLHINALC 443 (635)
Q Consensus 416 El~e~ia~ERv~~LekL~eln~rv~aL~ 443 (635)
.+..+|..||..+-..+.++...+..+.
T Consensus 161 ~l~~~i~~Ek~~Re~~~~~l~~~le~~~ 188 (247)
T PF06705_consen 161 RLQEKIEKEKNTRESKLSELRSELEEVK 188 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655555543
No 9
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=79.57 E-value=79 Score=32.51 Aligned_cols=36 Identities=11% Similarity=0.107 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 006685 416 EIAASIAREKVAQIEKMAEANLHINALCMAFYARSE 451 (635)
Q Consensus 416 El~e~ia~ERv~~LekL~eln~rv~aL~~Av~arse 451 (635)
++.+.+..||..+.++=..+-.++..+...+...-+
T Consensus 132 ~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~ 167 (247)
T PF06705_consen 132 ELQEAFENERNEREEREENILKRLEEEENRLQEKIE 167 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888877777777777666666555443
No 10
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=75.50 E-value=76 Score=30.18 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 328 LDGRAFAEEKRALKEKYEKELRDSRAR 354 (635)
Q Consensus 328 ~Da~~f~eel~kl~~kye~eL~d~aA~ 354 (635)
.+|..++++...++.+|+..|.+.++.
T Consensus 48 ~~A~~~~~ea~~~~~e~e~~l~~Ar~e 74 (141)
T PRK08476 48 EKVKTNSSDVSEIEHEIETILKNAREE 74 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667888888888888888874433
No 11
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=74.51 E-value=1.6e+02 Score=34.56 Aligned_cols=181 Identities=16% Similarity=0.194 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHHH-----HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 306 KDGKVVLDFLQAIHA-----AEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAATI 380 (635)
Q Consensus 306 ~~~k~~ld~i~Ai~a-----aek~Qae~Da~~f~eel~kl~~kye~eL~d~aA~el~~~~~aa~l~~efE~Er~kla~a~ 380 (635)
+.+.|..++-.+-.. .-+.-.+.-...+.++|..++..|+.++++.++. .++.--...+.+|+.|-+.....|
T Consensus 177 en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~--~~rd~t~~~r~~F~~eL~~Ai~ei 254 (546)
T KOG0977|consen 177 ENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRK--ARRDTTADNREYFKNELALAIREI 254 (546)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH--HhhcccccchHHHHHHHHHHHHHH
Q ss_pred HHH--------HHHHHHHHHHHHHHHH--------------HHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 006685 381 KSL--------QEKMEEKLRMELEQKE--------------NEAESKLKNALEL----AKAEIAASIAREKVAQIEKMAE 434 (635)
Q Consensus 381 K~l--------~e~~EekLk~ELeqvE--------------~EregrL~kL~el----akAEl~e~ia~ERv~~LekL~e 434 (635)
+.. .+.+|...+.+|.... +|...--.++..| ..-|.....-..++..|+..-+
T Consensus 255 Raqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~ 334 (546)
T KOG0977|consen 255 RAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLD 334 (546)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhh
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHhhhcC
Q 006685 435 ANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLDG 492 (635)
Q Consensus 435 ln~rv~aL~~Av~arse~arks~~v~kLaLAa~ALk~AL~sg~Pf~~EL~aLk~la~g 492 (635)
.+.+.-.-..+... .+..+--...++|. .-|+.-++....+..||.+.+++..|
T Consensus 335 e~~r~~e~~L~~kd-~~i~~mReec~~l~---~Elq~LlD~ki~Ld~EI~~YRkLLeg 388 (546)
T KOG0977|consen 335 EDQRSFEQALNDKD-AEIAKMREECQQLS---VELQKLLDTKISLDAEIAAYRKLLEG 388 (546)
T ss_pred hhhhhhhhhhhhHH-HHHHHHHHHHHHHH---HHHHHhhchHhHHHhHHHHHHHHhcc
No 12
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.09 E-value=1.4e+02 Score=35.18 Aligned_cols=47 Identities=13% Similarity=0.074 Sum_probs=28.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006685 402 AESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYAR 449 (635)
Q Consensus 402 regrL~kL~elakAEl~e~ia~ERv~~LekL~eln~rv~aL~~Av~ar 449 (635)
-.+++.+|..++.+++......|| .+...|.-++..++.|..+++..
T Consensus 635 L~~~~~~L~~~~~~~lp~l~~AEr-dFk~Elq~~~~~~~~L~~~iET~ 681 (741)
T KOG4460|consen 635 LMNRMKKLLHSFHSELPVLSDAER-DFKKELQLIPDQLRHLGNAIETV 681 (741)
T ss_pred HHHHHHHHHhcccccCCcchhHHH-HHHHHHHHhHHHHHHHHHHHHHH
Confidence 345666776666666665555666 34445566666777777766643
No 13
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=73.90 E-value=1.5e+02 Score=36.02 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=13.7
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 006685 563 DQANDGIESVICRVESYLR 581 (635)
Q Consensus 563 ~~~GdDveSILARAE~~L~ 581 (635)
+.-|..++..+...+.||.
T Consensus 708 DL~G~~~eeA~~~l~~fl~ 726 (782)
T PRK00409 708 DLRGMRYEEALERLDKYLD 726 (782)
T ss_pred ECCCCCHHHHHHHHHHHHH
Confidence 4567788888888877743
No 14
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=66.96 E-value=3e+02 Score=33.58 Aligned_cols=27 Identities=22% Similarity=0.123 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHHHHHhHhhcCCCC
Q 006685 515 TETLLQLNQKFDALKGTLRHFSLIPPG 541 (635)
Q Consensus 515 VpT~aqL~~RF~~Va~~~RraSLVPe~ 541 (635)
+....+|++.|..+.-++-+++--|+-
T Consensus 665 av~ss~LK~k~E~Lk~Evaka~~~pd~ 691 (762)
T PLN03229 665 VIRSSDLKSKIELLKLEVAKASKTPDV 691 (762)
T ss_pred HhcchhHHHHHHHHHHHHHhcCCCCCc
Confidence 344556888888888888777777754
No 15
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=66.75 E-value=2e+02 Score=35.33 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=18.1
Q ss_pred cccCCCCCCccchhHH------HhhhccccCCCCCCcc
Q 006685 118 VFSHSDEEPKTSISAV------EQAMQSVEPHKDIRQP 149 (635)
Q Consensus 118 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 149 (635)
+|.--||+.+.+.+.+ .+..++-|-..|+|.-
T Consensus 526 ifdlLDEEaklP~~s~qhFT~~vHe~~k~HfRL~~PRk 563 (1259)
T KOG0163|consen 526 IFDLLDEEAKLPKPSYQHFTARVHESNKNHFRLDLPRK 563 (1259)
T ss_pred hhhhhhhhccCCCcchHHHHHHHHHhhhcceeecCCch
Confidence 4555566666664444 3444555666666654
No 16
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=64.52 E-value=2.2e+02 Score=34.59 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=14.8
Q ss_pred CCCCCCHHHHHHHHHHHHhc
Q 006685 563 DQANDGIESVICRVESYLRE 582 (635)
Q Consensus 563 ~~~GdDveSILARAE~~L~~ 582 (635)
+.-|..++..+...+.||..
T Consensus 697 dl~G~~~~eA~~~l~~~ld~ 716 (771)
T TIGR01069 697 DLRGQRSEEALDRLEKFLND 716 (771)
T ss_pred ECCCCCHHHHHHHHHHHHHH
Confidence 55677888888888777764
No 17
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=61.33 E-value=2e+02 Score=29.59 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=23.1
Q ss_pred HHHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006685 311 VLDFLQAIHA-AEQRQAELDGRAFAEEKRALKEKYEKELRD 350 (635)
Q Consensus 311 ~ld~i~Ai~a-aek~Qae~Da~~f~eel~kl~~kye~eL~d 350 (635)
+.+.+..++. +.+.|..+|. +.++.+.|..+|....+.
T Consensus 26 ~~~~~~~~~~~~~~sQ~~id~--~~~e~~~L~~e~~~l~~e 64 (251)
T PF11932_consen 26 AQQVQQQWVQAAQQSQKRIDQ--WDDEKQELLAEYRQLERE 64 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 3444433333 4455777777 888888888888744333
No 18
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=59.93 E-value=3.8e+02 Score=32.35 Aligned_cols=16 Identities=19% Similarity=0.032 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 006685 458 FAHKLALGALALEDAL 473 (635)
Q Consensus 458 ~v~kLaLAa~ALk~AL 473 (635)
.+..|-.++.+|++.-
T Consensus 588 ~~e~L~~aL~amqdk~ 603 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKN 603 (697)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4555666666666553
No 19
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.20 E-value=3e+02 Score=30.83 Aligned_cols=53 Identities=23% Similarity=0.237 Sum_probs=31.2
Q ss_pred HHHhcCCChHHHHHHHHhhhcCCCCchhHHHHHhcCchhHhhcCCCCHHHHHHHHHHHHH
Q 006685 471 DALSRGLPIQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLNQKFDALKG 530 (635)
Q Consensus 471 ~AL~sg~Pf~~EL~aLk~la~g~~~D~lV~aaLsSLp~~aae~GVpT~aqL~~RF~~Va~ 530 (635)
.++....|+.+.+-. .+| .|-.+.-+|-+|.+ +..+||.+.++-..--+.|.+
T Consensus 293 ~~~~~~~~l~kq~l~--~~A----~d~aieD~i~~L~~-~~r~G~i~l~~yLr~VR~lsR 345 (365)
T KOG2391|consen 293 EAIECTAPLYKQILE--CYA----LDLAIEDAIYSLGK-SLRDGVIDLDQYLRHVRLLSR 345 (365)
T ss_pred hhhhccchHHHHHHH--hhh----hhhHHHHHHHHHHH-HHhcCeeeHHHHHHHHHHHHH
Confidence 344445565554322 222 46666777778875 567888888886555444444
No 20
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.64 E-value=2.8e+02 Score=30.99 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 357 MRTEEAAILEKELKRERAKAAATI 380 (635)
Q Consensus 357 ~~~~~aa~l~~efE~Er~kla~a~ 380 (635)
|-......++.-.++|..++.+..
T Consensus 211 visa~~eklR~r~eeeme~~~aeq 234 (365)
T KOG2391|consen 211 VISAVREKLRRRREEEMERLQAEQ 234 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555665666666655533
No 21
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=56.92 E-value=2.5e+02 Score=29.33 Aligned_cols=84 Identities=24% Similarity=0.275 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHH
Q 006685 390 KLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKS-YFAHKLALGALA 468 (635)
Q Consensus 390 kLk~ELeqvE~EregrL~kL~elakAEl~e~ia~ERv~~LekL~eln~rv~aL~~Av~arse~arks-~~v~kLaLAa~A 468 (635)
+|..+++-.++|. ..|..+... .+.|..||..+++.|-..+.-++.|+..+.....+..+. ..++ -
T Consensus 19 ~i~~e~~~~e~ee-~~L~e~~kE-----~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~-------r 85 (230)
T PF10146_consen 19 EILQEVESLENEE-KCLEEYRKE-----MEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQ-------R 85 (230)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 3444555444444 444444433 477889999999999999999999998887643332221 1111 1
Q ss_pred HHHHHhcCCChHHHHHHHHhh
Q 006685 469 LEDALSRGLPIQKEIDTLYTY 489 (635)
Q Consensus 469 Lk~AL~sg~Pf~~EL~aLk~l 489 (635)
+.. --.|+.++++.++.-
T Consensus 86 ~~e---ey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 86 LYE---EYKPLKDEINELRKE 103 (230)
T ss_pred HHH---HHHHHHHHHHHHHHH
Confidence 111 123677777777765
No 22
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.61 E-value=5.1e+02 Score=32.17 Aligned_cols=11 Identities=27% Similarity=0.443 Sum_probs=5.2
Q ss_pred chhhhhhcccc
Q 006685 269 ASLLDAYHLRD 279 (635)
Q Consensus 269 ~sl~~~y~l~~ 279 (635)
..|+--+.|.|
T Consensus 229 ~~LA~IW~LsD 239 (1118)
T KOG1029|consen 229 NQLAHIWTLSD 239 (1118)
T ss_pred hhHhhheeeec
Confidence 44444455543
No 23
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=53.98 E-value=7.2e+02 Score=33.73 Aligned_cols=37 Identities=24% Similarity=0.234 Sum_probs=27.2
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 321 AEQRQAELDGRAFAEEKRALKEKYEKELRDSRARELM 357 (635)
Q Consensus 321 aek~Qae~Da~~f~eel~kl~~kye~eL~d~aA~el~ 357 (635)
.++..++....-+.+++..+.+.+.+..+.+..-+..
T Consensus 957 ~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~ 993 (1930)
T KOG0161|consen 957 LEKNAAENKLKNLEEEINSLDENISKLSKEKKELEER 993 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777778888888888888888876655444
No 24
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=51.75 E-value=3.1e+02 Score=32.48 Aligned_cols=48 Identities=19% Similarity=0.102 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHhhhc
Q 006685 432 MAEANLHINALCMAFYARSEEARKSYFAHKLALGALALEDALSRGLPIQKEIDTLYTYLD 491 (635)
Q Consensus 432 L~eln~rv~aL~~Av~arse~arks~~v~kLaLAa~ALk~AL~sg~Pf~~EL~aLk~la~ 491 (635)
|.+...+|..|+..+++..... ..|.--|... ..|+.+|+..|+....
T Consensus 389 L~d~e~ni~kL~~~v~~s~~rl------~~L~~qWe~~------R~pL~~e~r~lk~~~~ 436 (594)
T PF05667_consen 389 LPDAEENIAKLQALVEASEQRL------VELAQQWEKH------RAPLIEEYRRLKEKAS 436 (594)
T ss_pred hcCcHHHHHHHHHHHHHHHHHH------HHHHHHHHHH------HhHHHHHHHHHHHHHh
Confidence 4455666777777777642222 2222222322 4589999999987653
No 25
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=51.04 E-value=1.5e+02 Score=26.45 Aligned_cols=58 Identities=24% Similarity=0.299 Sum_probs=39.0
Q ss_pred cCCChHHHHHHHHhhhcC-------CCCchhHHHHHhcCchhH--------hhcCCC--CHHHHHHHHHHHHHHH
Q 006685 475 RGLPIQKEIDTLYTYLDG-------IEKDSVLDLVLSSLPEET--------RYHGTE--TLLQLNQKFDALKGTL 532 (635)
Q Consensus 475 sg~Pf~~EL~aLk~la~g-------~~~D~lV~aaLsSLp~~a--------ae~GVp--T~aqL~~RF~~Va~~~ 532 (635)
.+.++..=+..++.+... +.+..+|..+|.+||+.. ....++ |.++|..++..-...+
T Consensus 39 ~~~sv~~y~~~~~~i~~~L~~~g~~i~d~~~v~~iL~~Lp~~y~~~~~~i~~~~~~~~~t~~el~~~L~~~E~~~ 113 (119)
T PF14223_consen 39 DGESVDEYISRLKEIVDELRAIGKPISDEDLVSKILRSLPPSYDTFVTAIRNSKDLPKMTLEELISRLLAEEMRL 113 (119)
T ss_pred ccccHHHHHHHHHHhhhhhhhcCCcccchhHHHHHHhcCCchhHHHHHHHHhcCCCCcCCHHHHHHHHHHHHHHH
Confidence 355666555555554422 368899999999999854 244566 8889988887655444
No 26
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=50.33 E-value=2.6e+02 Score=27.54 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006685 330 GRAFAEEKRALKEKYEKELRDSR 352 (635)
Q Consensus 330 a~~f~eel~kl~~kye~eL~d~a 352 (635)
|.-.+++...|.++|+..|++.+
T Consensus 47 Ae~~r~eA~~l~~e~e~~L~~Ar 69 (154)
T PRK06568 47 AEKLKEDAALLFEQTNAQIKKLE 69 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677778888888887777633
No 27
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=49.92 E-value=4.8e+02 Score=30.47 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHH-----------Hhh--HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHH
Q 006685 387 MEEKLRMELEQKENEAE-----------SKL--KNALELA-KAEIAASIAREKVAQIEKMAEANLHIN-ALCMAFYARSE 451 (635)
Q Consensus 387 ~EekLk~ELeqvE~Ere-----------grL--~kL~ela-kAEl~e~ia~ERv~~LekL~eln~rv~-aL~~Av~arse 451 (635)
..++-++|++++|.||| ||- .||.+-. ...|......||.+-|+.|.-.-..|. +|..-|..+++
T Consensus 201 qaqrr~tE~erae~EretiRvkA~Aeaegraheakl~edvnrr~l~~~~n~eRekwl~aInTtf~higgG~r~~ltD~~K 280 (630)
T KOG0742|consen 201 QAQRRKTEMERAEAERETIRVKAKAEAEGRAHEAKLNEDVNRRQLRLKANEEREKWLEAINTTFTHIGGGLRAFLTDWNK 280 (630)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhhhHHHHHHHHHhhhHHHhhhHHHHHhhhhHh
Confidence 44555666666655543 332 3332222 122555666777777777653333332 23333444444
Q ss_pred HHHHHHHHHHHH
Q 006685 452 EARKSYFAHKLA 463 (635)
Q Consensus 452 ~arks~~v~kLa 463 (635)
....--.+..|+
T Consensus 281 li~tVgGlTaLA 292 (630)
T KOG0742|consen 281 LIATVGGLTALA 292 (630)
T ss_pred HHHHhhhHHHHH
Confidence 333333333333
No 28
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=49.33 E-value=4.4e+02 Score=29.86 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 329 DGRAFAEEKRALKEKYEKELRDSR 352 (635)
Q Consensus 329 Da~~f~eel~kl~~kye~eL~d~a 352 (635)
++...++++..++.+|++.|.+.+
T Consensus 43 eAe~a~~ea~~~~~~~e~~L~~Ak 66 (445)
T PRK13428 43 ESATAADRLAEADQAHTKAVEDAK 66 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678889999999998888843
No 29
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=48.35 E-value=2.8e+02 Score=27.31 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 329 DGRAFAEEKRALKEKYEKELRDSR 352 (635)
Q Consensus 329 Da~~f~eel~kl~~kye~eL~d~a 352 (635)
++....++...+..+|++.|.+.+
T Consensus 66 ~Ae~~~~eA~~~~~e~e~~L~~A~ 89 (184)
T CHL00019 66 NSEERREEAIEKLEKARARLRQAE 89 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777877777643
No 30
>PTZ00121 MAEBL; Provisional
Probab=44.79 E-value=9.2e+02 Score=32.27 Aligned_cols=6 Identities=33% Similarity=0.401 Sum_probs=2.3
Q ss_pred cccccc
Q 006685 250 SIIIED 255 (635)
Q Consensus 250 ~~~~~~ 255 (635)
++.++.
T Consensus 1023 NfNIek 1028 (2084)
T PTZ00121 1023 NFNIEK 1028 (2084)
T ss_pred cccchh
Confidence 333333
No 31
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=43.48 E-value=3.9e+02 Score=27.55 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCChHHH
Q 006685 466 ALALEDALSRGLPIQKE 482 (635)
Q Consensus 466 a~ALk~AL~sg~Pf~~E 482 (635)
+..|+.-+....||..+
T Consensus 111 ~~~L~~~v~~d~Pf~~~ 127 (251)
T PF11932_consen 111 IDELEQFVELDLPFLLE 127 (251)
T ss_pred HHHHHHHHhcCCCCChH
Confidence 46677777778899887
No 32
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=42.93 E-value=3.8e+02 Score=27.25 Aligned_cols=25 Identities=8% Similarity=0.154 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 328 LDGRAFAEEKRALKEKYEKELRDSR 352 (635)
Q Consensus 328 ~Da~~f~eel~kl~~kye~eL~d~a 352 (635)
.+|....++.+.+..+|++.|.+.+
T Consensus 89 ~~Ae~~~~eA~~~l~e~e~~L~~A~ 113 (205)
T PRK06231 89 NQANELKQQAQQLLENAKQRHENAL 113 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777888888888877744
No 33
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=41.33 E-value=7.5e+02 Score=30.25 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 006685 385 EKMEEKLRMELEQKENEAESKLKNALE 411 (635)
Q Consensus 385 e~~EekLk~ELeqvE~EregrL~kL~e 411 (635)
..+|+..+.||+++.......|..|..
T Consensus 132 ~~lEE~~q~ELee~q~~Hqeql~~Lt~ 158 (739)
T PF07111_consen 132 KNLEEGSQRELEEAQRLHQEQLSSLTQ 158 (739)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666677777776666666666643
No 34
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=41.21 E-value=2.7e+02 Score=25.10 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 327 ELDGRAFAEEKRALKEKYEKELRDSR 352 (635)
Q Consensus 327 e~Da~~f~eel~kl~~kye~eL~d~a 352 (635)
..++.....+...+..+|+..|...+
T Consensus 39 ~~~a~~~~~ea~~~~~e~~~~l~~a~ 64 (132)
T PF00430_consen 39 LEEAEELKEEAEQLLAEYEEKLAEAR 64 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777776633
No 35
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=40.67 E-value=8.9e+02 Score=30.92 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=12.6
Q ss_pred HhhcCCCC--HHHHHHHHHHHHHHHh
Q 006685 510 TRYHGTET--LLQLNQKFDALKGTLR 533 (635)
Q Consensus 510 aae~GVpT--~aqL~~RF~~Va~~~R 533 (635)
...+||.+ ..+|..+...+...+.
T Consensus 763 L~~~GvD~~~I~~l~~~i~~L~~~l~ 788 (1201)
T PF12128_consen 763 LAGKGVDPERIQQLKQEIEQLEKELK 788 (1201)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34556655 4455555555555543
No 36
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=38.42 E-value=3.7e+02 Score=25.83 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 328 LDGRAFAEEKRALKEKYEKELRDSR 352 (635)
Q Consensus 328 ~Da~~f~eel~kl~~kye~eL~d~a 352 (635)
-++.-..++...+.++|+..|.+.+
T Consensus 63 ~~Ae~~~~ea~~~~~e~e~~L~~A~ 87 (156)
T CHL00118 63 TKASEILAKANELTKQYEQELSKAR 87 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466678888888889998888844
No 37
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=37.55 E-value=4.1e+02 Score=26.11 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006685 330 GRAFAEEKRALKEKYEKELRD 350 (635)
Q Consensus 330 a~~f~eel~kl~~kye~eL~d 350 (635)
+....++-..+..+|+.+|..
T Consensus 70 Ae~~~~eA~~~l~e~e~~L~~ 90 (184)
T PRK13455 70 ARALREEAQTLLASYERKQRE 90 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666665
No 38
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=37.09 E-value=7.5e+02 Score=29.03 Aligned_cols=75 Identities=21% Similarity=0.242 Sum_probs=40.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHhcCCC
Q 006685 400 NEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARKSYFAHKLA-LGALALEDALSRGLP 478 (635)
Q Consensus 400 ~EregrL~kL~elakAEl~e~ia~ERv~~LekL~eln~rv~aL~~Av~arse~arks~~v~kLa-LAa~ALk~AL~sg~P 478 (635)
.+...+|.+|.-..+.|....-..|| +=+.+++.++.+|..|++. ......-+++++.. +++.-|+.|. .-.|
T Consensus 157 ~~E~~~l~~L~~AL~kE~~~Rt~dE~----~mv~~yr~ki~aL~~aIe~-Er~~m~EEAiqe~~dmsaeVlE~Aa-eEVP 230 (508)
T PF00901_consen 157 KEENKQLDRLARALQKESRERTQDER----KMVEEYRQKIDALKNAIEV-EREGMQEEAIQEIADMSAEVLEHAA-EEVP 230 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHH----HHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHhcccHHHHHHHh-hhCC
Confidence 33344555554333334333333333 3456888999999999887 34455566777664 4444444433 2344
Q ss_pred hH
Q 006685 479 IQ 480 (635)
Q Consensus 479 f~ 480 (635)
|.
T Consensus 231 ~v 232 (508)
T PF00901_consen 231 LV 232 (508)
T ss_pred cc
Confidence 43
No 39
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=36.91 E-value=2.6e+02 Score=23.74 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=12.9
Q ss_pred hhhhhhH-HHHHHHHHHHHHH
Q 006685 324 RQAELDG-RAFAEEKRALKEK 343 (635)
Q Consensus 324 ~Qae~Da-~~f~eel~kl~~k 343 (635)
.++|+.| ..+++||.+.+..
T Consensus 6 L~~EirakQ~~~eEL~kvk~~ 26 (61)
T PF08826_consen 6 LEAEIRAKQAIQEELTKVKSA 26 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 4666665 3577777777654
No 40
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=36.63 E-value=5e+02 Score=26.82 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 006685 329 DGRAFAEEKRALKEKYEKELRD 350 (635)
Q Consensus 329 Da~~f~eel~kl~~kye~eL~d 350 (635)
+|...+.+...+..+|+..|.+
T Consensus 47 ~Ae~~~~eA~~~~~e~e~~l~~ 68 (246)
T TIGR03321 47 DADTKKREAEQERREYEEKNEE 68 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677777777766
No 41
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=36.49 E-value=4.1e+02 Score=25.87 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 328 LDGRAFAEEKRALKEKYEKELRDSR 352 (635)
Q Consensus 328 ~Da~~f~eel~kl~~kye~eL~d~a 352 (635)
-++....++...+.++|+..|.+.+
T Consensus 59 ~~Ae~~~~eA~~~~~e~e~~L~~a~ 83 (175)
T PRK14472 59 DRAHSAKDEAEAILRKNRELLAKAD 83 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677778888888888887744
No 42
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=36.30 E-value=4e+02 Score=25.60 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 362 AAILEKELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESKLKNALELAKAEIAASIAREKVAQIEKM 432 (635)
Q Consensus 362 aa~l~~efE~Er~kla~a~K~l~e~~EekLk~ELeqvE~EregrL~kL~elakAEl~e~ia~ERv~~LekL 432 (635)
+.....+++..........+.+.+.+.+.-+.+.++...+......++.+-+ ...+..||..-++.|
T Consensus 72 a~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a----~~~i~~ek~~a~~~l 138 (156)
T CHL00118 72 ANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEA----TKQLEAQKEKALKSL 138 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3444445555554444443333333333333333333333333333333333 234444554444333
No 43
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=35.25 E-value=1e+03 Score=30.15 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=21.5
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCCCCcchhhhHH
Q 006685 30 RKEYSTASQKNVSPKPGPTGKPPESGSNFSPIIFGATV 67 (635)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~k~~~g~~~ 67 (635)
||+|.|-..++.+=+|-=...|. .|.|++|-.++
T Consensus 737 Rk~~rtrt~~~n~~npvy~eepf----vF~KVvLpeLA 770 (1189)
T KOG1265|consen 737 RKEFRTRTVQGNSFNPVYEEEPF----VFRKVVLPELA 770 (1189)
T ss_pred hhhhhhccccCCCCCcccccCCc----ccceecccchh
Confidence 46677777777666666666554 46777655544
No 44
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=34.77 E-value=5.3e+02 Score=26.61 Aligned_cols=6 Identities=0% Similarity=0.257 Sum_probs=2.3
Q ss_pred HHHHHH
Q 006685 520 QLNQKF 525 (635)
Q Consensus 520 qL~~RF 525 (635)
+..+++
T Consensus 190 ~~~~~i 195 (246)
T TIGR03321 190 EQREQI 195 (246)
T ss_pred HHHHHH
Confidence 333443
No 45
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.70 E-value=2.2e+02 Score=31.20 Aligned_cols=112 Identities=15% Similarity=0.140 Sum_probs=69.8
Q ss_pred CCchhHHHH--HhcCchhHh---------hcCCCCHHHHHHHHHHHHHHH------hHhhcCCCCCCCHHHHHHHHHhhh
Q 006685 494 EKDSVLDLV--LSSLPEETR---------YHGTETLLQLNQKFDALKGTL------RHFSLIPPGGGGILTHSLAHIASW 556 (635)
Q Consensus 494 ~~D~lV~aa--LsSLp~~aa---------e~GVpT~aqL~~RF~~Va~~~------RraSLVPe~gaGll~hllS~l~S~ 556 (635)
+..+-|... |.+||..++ =.|.-+..+|+.+..++.+.- .-..+++.++ ++++...+...
T Consensus 84 D~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~~~e~~~~~~~~~~~~e~---~~~a~~~~~~a 160 (304)
T COG3118 84 DAEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPAEEEEALAEAKELIEAED---FGEAAPLLKQA 160 (304)
T ss_pred CcchhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHHHHhcChHHHHHHHHhhhhhhccc---hhhHHHHHHHH
Confidence 344544443 467875432 368889999999999877651 1123445443 22332222222
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHH
Q 006685 557 LKVKEADQANDGIESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAIT 618 (635)
Q Consensus 557 L~fK~G~~~GdDveSILARAE~~L~~GDLd~AarELen~L~Gw~Ar~lA~DWL~eAR~RLEV 618 (635)
+-. .+++ .+.++.-++.+|..|+.+.|-..| ++|+.. .-..+|.. ++.+++.
T Consensus 161 l~~---~~~~--~~~~~~la~~~l~~g~~e~A~~iL-~~lP~~---~~~~~~~~-l~a~i~l 212 (304)
T COG3118 161 LQA---APEN--SEAKLLLAECLLAAGDVEAAQAIL-AALPLQ---AQDKAAHG-LQAQIEL 212 (304)
T ss_pred HHh---Cccc--chHHHHHHHHHHHcCChHHHHHHH-HhCccc---chhhHHHH-HHHHHHH
Confidence 211 3333 678899999999999999999999 699875 33456666 5555544
No 46
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=34.38 E-value=4.5e+02 Score=25.63 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 329 DGRAFAEEKRALKEKYEKELRDSR 352 (635)
Q Consensus 329 Da~~f~eel~kl~~kye~eL~d~a 352 (635)
++....++...+..+|++.|.+.+
T Consensus 58 ~Ae~~~~eA~~~~~e~e~~l~~a~ 81 (173)
T PRK13460 58 KASELRLEAEALLKDYEARLNSAK 81 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777778888887777733
No 47
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=34.23 E-value=1.4e+03 Score=31.29 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 363 AILEKELKRERAKAAATIKSLQEK 386 (635)
Q Consensus 363 a~l~~efE~Er~kla~a~K~l~e~ 386 (635)
...+.++|+.+.|+....+..++.
T Consensus 1033 ~~~r~e~Ek~~rkle~el~~~~e~ 1056 (1930)
T KOG0161|consen 1033 KRIRMELEKAKRKLEGELKDLQES 1056 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhH
Confidence 344556666777776666544433
No 48
>PTZ00121 MAEBL; Provisional
Probab=34.16 E-value=1.3e+03 Score=30.99 Aligned_cols=13 Identities=38% Similarity=0.388 Sum_probs=5.8
Q ss_pred cchhhhhhhhhhh
Q 006685 287 KATEDFINVMEEL 299 (635)
Q Consensus 287 ~~~e~~~~~~~~~ 299 (635)
-++|++++-.+++
T Consensus 1091 ~~~~~~~~~~e~~ 1103 (2084)
T PTZ00121 1091 EATEEAFGKAEEA 1103 (2084)
T ss_pred hhhHHHhhhHHHh
Confidence 3444554444443
No 49
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=33.38 E-value=1.3e+02 Score=23.48 Aligned_cols=44 Identities=16% Similarity=0.209 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHH
Q 006685 573 ICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAIT 618 (635)
Q Consensus 573 LARAE~~L~~GDLd~AarELen~L~Gw~Ar~lA~DWL~eAR~RLEV 618 (635)
+.++..++..||++.|++.++..|.-. |. -..-|..-++..+..
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~-~~~a~~~lg~~~~~~ 44 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQD-PD-NPEAWYLLGRILYQQ 44 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCS-TT-HHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHC-CC-CHHHHHHHHHHHHHc
Confidence 356777888888888888885444443 43 344455555544443
No 50
>COG4487 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.99 E-value=8.2e+02 Score=28.26 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 368 ELKRERAKAAATIKSLQEKMEEKLRMELEQKENEAESK--LKNALELAKAEIAASIAREKVAQIEKMAEANLHINA 441 (635)
Q Consensus 368 efE~Er~kla~a~K~l~e~~EekLk~ELeqvE~Eregr--L~kL~elakAEl~e~ia~ERv~~LekL~eln~rv~a 441 (635)
+-++|++-+....+.++.....-|++.++-.+.+|++. +..+.-..+..+.+.|+.+|.+..++|.+.|..+.-
T Consensus 111 e~dke~~~le~~L~~~~~e~~~~lq~~~e~~~kkre~~k~~~~l~~~~ekK~e~sLe~eR~k~~~ql~~~~~~~e~ 186 (438)
T COG4487 111 EKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEF 186 (438)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHH
Confidence 44667777777777666666667777765444444442 222211112345566999999999999988755443
No 51
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=32.98 E-value=4.8e+02 Score=25.54 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 329 DGRAFAEEKRALKEKYEKELRDSR 352 (635)
Q Consensus 329 Da~~f~eel~kl~~kye~eL~d~a 352 (635)
++....++...+..+|+..|.+.+
T Consensus 60 ~Ae~~~~eA~~~~~e~e~~l~~a~ 83 (173)
T PRK13453 60 DAEQAKLNAQKLEEENKQKLKETQ 83 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777888887777743
No 52
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=32.67 E-value=4.6e+02 Score=25.20 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 328 LDGRAFAEEKRALKEKYEKELRDSR 352 (635)
Q Consensus 328 ~Da~~f~eel~kl~~kye~eL~d~a 352 (635)
-+|....++...+..+|+..|.+.+
T Consensus 49 ~~Ae~~~~ea~~~~~e~e~~l~~A~ 73 (164)
T PRK14473 49 RDAEKVREQLANAKRDYEAELAKAR 73 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677778888888888887744
No 53
>PLN03086 PRLI-interacting factor K; Provisional
Probab=32.00 E-value=2.5e+02 Score=33.18 Aligned_cols=19 Identities=42% Similarity=0.643 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006685 336 EKRALKEKYEKELRDSRAR 354 (635)
Q Consensus 336 el~kl~~kye~eL~d~aA~ 354 (635)
||++..+|.++|++.++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~ 22 (567)
T PLN03086 4 ELRRAREKLEREQRERKQR 22 (567)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5677777777777765444
No 54
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=31.50 E-value=5.1e+02 Score=25.37 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 329 DGRAFAEEKRALKEKYEKELRDSR 352 (635)
Q Consensus 329 Da~~f~eel~kl~~kye~eL~d~a 352 (635)
++.....+...+..+|+..|.+.+
T Consensus 64 ~Ae~~~~ea~~~~~e~e~~L~~Ar 87 (167)
T PRK08475 64 EIQEKLKESKEKKEDALKKLEEAK 87 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567777778888888777743
No 55
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=31.14 E-value=95 Score=24.27 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhh
Q 006685 566 NDGIESVICRVESYLREGKLAEAADALEEGVRGSQAE 602 (635)
Q Consensus 566 GdDveSILARAE~~L~~GDLd~AarELen~L~Gw~Ar 602 (635)
.++.+..+..++.++..|+++.|...++ .+.-..|.
T Consensus 22 p~~~~~~~~la~~~~~~g~~~~A~~~l~-~~~~~~~~ 57 (68)
T PF14559_consen 22 PDNPEARLLLAQCYLKQGQYDEAEELLE-RLLKQDPD 57 (68)
T ss_dssp TTSHHHHHHHHHHHHHTT-HHHHHHHHH-CCHGGGTT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHCcC
Confidence 3488899999999999999999999994 77655343
No 56
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=30.56 E-value=4.9e+02 Score=24.96 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 329 DGRAFAEEKRALKEKYEKELRDSR 352 (635)
Q Consensus 329 Da~~f~eel~kl~~kye~eL~d~a 352 (635)
++...+++...+..+|++.|.+.+
T Consensus 50 ~A~~~~~ea~~~~~e~e~~l~~A~ 73 (164)
T PRK14471 50 SAEEARKEMQNLQADNERLLKEAR 73 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466678888888999998888743
No 57
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=30.22 E-value=17 Score=41.71 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 372 ERAKAAATIKSLQEKMEEKLRMELEQKENEAES 404 (635)
Q Consensus 372 Er~kla~a~K~l~e~~EekLk~ELeqvE~Ereg 404 (635)
+..|+-..|+.=.+.-|+|||++-++++....+
T Consensus 405 qt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmks 437 (495)
T PF12004_consen 405 QTQKLLLQYQARLEDSEERLRRQQEEKDSQMKS 437 (495)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHH
Confidence 344555556654555777888766555444443
No 58
>KOG2668 consensus Flotillins [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=29.94 E-value=8.7e+02 Score=27.61 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=23.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 399 ENEAESKLKNALELAKAEIAASIAREKVAQIEKMAEANLHINAL 442 (635)
Q Consensus 399 E~EregrL~kL~elakAEl~e~ia~ERv~~LekL~eln~rv~aL 442 (635)
|+|-..|-.+|+.+.+.+-.+. +-++.+|++.|....-+
T Consensus 269 eqEiqr~~~el~A~vR~paeAe-----~~r~~klaEAnk~~~~~ 307 (428)
T KOG2668|consen 269 EQEIQRRVEELNATVRTPAEAE-----VERETKLAEANKELYNK 307 (428)
T ss_pred HHHHHHHHHHHHHHhCChhHHH-----HHHHHHHHHHHHHHHHH
Confidence 5566666666665554443333 56677888777664444
No 59
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=29.63 E-value=8.8e+02 Score=27.57 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 006685 359 TEEAAILEKELKRERAKAAATIK 381 (635)
Q Consensus 359 ~~~aa~l~~efE~Er~kla~a~K 381 (635)
+.+...+...+|+||.+|..++.
T Consensus 134 aaeGDDlt~~LEKEReqL~QQiE 156 (561)
T KOG1103|consen 134 AAEGDDLTAHLEKEREQLQQQIE 156 (561)
T ss_pred hhccchHHHHHHHHHHHHHHHHH
Confidence 34456678899999999988864
No 60
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=29.17 E-value=3.8e+02 Score=25.46 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=31.8
Q ss_pred HHHHHHhHhhcCCCCCCCHHHHH---HHHHhhhccccccCCCCCCHHHHHH-----------HHHHHHhcCCHHHHHHHH
Q 006685 527 ALKGTLRHFSLIPPGGGGILTHS---LAHIASWLKVKEADQANDGIESVIC-----------RVESYLREGKLAEAADAL 592 (635)
Q Consensus 527 ~Va~~~RraSLVPe~gaGll~hl---lS~l~S~L~fK~G~~~GdDveSILA-----------RAE~~L~~GDLd~AarEL 592 (635)
.+...++..---|++++++.+-+ +-.+.|.|. |+|-++||. .-+.+|+..+|...++.+
T Consensus 48 eL~~~v~~lGg~p~~~gs~~g~lhr~w~~lks~~~-------~~~d~aiL~~~e~gEd~~~~~y~~aL~~~~l~~~~r~~ 120 (139)
T TIGR02284 48 ELQQVVASLGGKPEDHGSMVGSLHQFWGKIRATLT-------PNDDYVVLEEAERGEDRAKKAYDETLADQDTPAAARDV 120 (139)
T ss_pred HHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHc-------CCChHHHHHHHHHhHHHHHHHHHHHHhcCCCChHHHHH
Confidence 34445556566788878777643 333334332 334444444 445556555555555555
No 61
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=29.06 E-value=4.6e+02 Score=24.49 Aligned_cols=11 Identities=36% Similarity=0.265 Sum_probs=7.5
Q ss_pred HHHHHHHHHHH
Q 006685 309 KVVLDFLQAIH 319 (635)
Q Consensus 309 k~~ld~i~Ai~ 319 (635)
|++|=.|+|..
T Consensus 8 ki~LAGLGa~a 18 (118)
T TIGR01837 8 KVWLAGIGALA 18 (118)
T ss_pred HHHHHHHhHHH
Confidence 66777777753
No 62
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=28.39 E-value=5.9e+02 Score=25.20 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 329 DGRAFAEEKRALKEKYEKELRDSR 352 (635)
Q Consensus 329 Da~~f~eel~kl~~kye~eL~d~a 352 (635)
++..++.+...+..+|+..|.+.+
T Consensus 73 ~Ae~~~~eA~~~~~eye~~L~~Ar 96 (181)
T PRK13454 73 AAEELKQKAVEAEKAYNKALADAR 96 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677888888888888877743
No 63
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=28.35 E-value=89 Score=21.25 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 006685 571 SVICRVESYLREGKLAEAADALE 593 (635)
Q Consensus 571 SILARAE~~L~~GDLd~AarELe 593 (635)
..+..+..++..||++.|.+.++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45678899999999999999873
No 64
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=27.51 E-value=9.1e+02 Score=27.03 Aligned_cols=49 Identities=22% Similarity=0.215 Sum_probs=26.5
Q ss_pred ccccCCcHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006685 302 GYLSKDGKVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRD 350 (635)
Q Consensus 302 ~~~~~~~k~~ld~i~Ai~aaek~Qae~Da~~f~eel~kl~~kye~eL~d 350 (635)
|.-+.-|...+|...+...-...|-+.|-.+=+-=|.-|+.--.++|++
T Consensus 100 g~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~ 148 (366)
T KOG1118|consen 100 GDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKD 148 (366)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHH
Confidence 3445568888888877655444555555444333333333332335555
No 65
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=26.35 E-value=1.6e+03 Score=29.44 Aligned_cols=12 Identities=17% Similarity=0.036 Sum_probs=7.4
Q ss_pred CHHHHHHHHHhh
Q 006685 544 GILTHSLAHIAS 555 (635)
Q Consensus 544 Gll~hllS~l~S 555 (635)
-.+.|.++.=+.
T Consensus 828 k~lq~~leae~~ 839 (1317)
T KOG0612|consen 828 KELQDQLEAEQC 839 (1317)
T ss_pred HHHHHHHHHHHH
Confidence 346677776663
No 66
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=26.29 E-value=1.2e+03 Score=28.18 Aligned_cols=16 Identities=13% Similarity=0.023 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhH
Q 006685 435 ANLHINALCMAFYARS 450 (635)
Q Consensus 435 ln~rv~aL~~Av~ars 450 (635)
-+.+-++||.++.+.-
T Consensus 466 e~r~a~q~w~ac~nlk 481 (657)
T KOG1854|consen 466 EARKAKQLWLACSNLK 481 (657)
T ss_pred HhhhHHHHHHHHHHHH
Confidence 3344455555555433
No 67
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=26.23 E-value=6.1e+02 Score=24.61 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 328 LDGRAFAEEKRALKEKYEKELRDSR 352 (635)
Q Consensus 328 ~Da~~f~eel~kl~~kye~eL~d~a 352 (635)
.+|....++...+..+|++.|.+.+
T Consensus 51 ~~Ae~~k~eAe~~~~~~e~~L~~A~ 75 (167)
T PRK14475 51 DEAQRLREEAQALLADVKAEREEAE 75 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466678888888888888888744
No 68
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=26.06 E-value=1.9e+02 Score=25.28 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHHH
Q 006685 570 ESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARN 614 (635)
Q Consensus 570 eSILARAE~~L~~GDLd~AarELen~L~Gw~Ar~lA~DWL~eAR~ 614 (635)
.+-+..++++|+.||+..|+..+. + +-.||+..|+
T Consensus 36 ~~Y~~D~~~fl~~gD~v~Ala~~s-----Y-----a~GwLDAg~~ 70 (75)
T PF04010_consen 36 ESYLEDGKYFLEKGDYVNALACFS-----Y-----AHGWLDAGRR 70 (75)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH-----H-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH-----H-----HHHHHHHHHH
Confidence 466778899999999999999995 4 4468877654
No 69
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=25.67 E-value=6.3e+02 Score=24.60 Aligned_cols=24 Identities=38% Similarity=0.664 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 329 DGRAFAEEKRALKEKYEKELRDSR 352 (635)
Q Consensus 329 Da~~f~eel~kl~~kye~eL~d~a 352 (635)
+|....++.+.+..+|+.+|.+.+
T Consensus 48 ~A~~~~~ea~~~~~~~~~~l~~Ar 71 (161)
T COG0711 48 EAERLKEEAQALLAEYEQELEEAR 71 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777777766644
No 70
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=24.87 E-value=1.4e+03 Score=28.19 Aligned_cols=54 Identities=13% Similarity=0.164 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 327 ELDGRAFAEEKRALKEKYEKELRD-SRARELMRTEEAAILEKELKRERAKAAATIK 381 (635)
Q Consensus 327 e~Da~~f~eel~kl~~kye~eL~d-~aA~el~~~~~aa~l~~efE~Er~kla~a~K 381 (635)
.+-+...+-||+.|.++-...+-. ...-.++. .+...-++.++.|+.++.....
T Consensus 470 pp~~~dL~~ELqqLReERdRl~aeLqlSa~liq-qeV~~ArEqgeaE~~~Lse~aq 524 (739)
T PF07111_consen 470 PPSVTDLSLELQQLREERDRLDAELQLSARLIQ-QEVGRAREQGEAERQQLSEVAQ 524 (739)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788888887763332222 11112232 2233445677777777766544
No 71
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=24.58 E-value=6.3e+02 Score=24.23 Aligned_cols=14 Identities=43% Similarity=0.510 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 006685 419 ASIAREKVAQIEKM 432 (635)
Q Consensus 419 e~ia~ERv~~LekL 432 (635)
..+..||..-+..|
T Consensus 111 ~~i~~ek~~a~~~l 124 (164)
T PRK14471 111 ASIESEKNAAMAEI 124 (164)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444454444333
No 72
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=23.73 E-value=6.9e+02 Score=24.35 Aligned_cols=13 Identities=23% Similarity=0.174 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 006685 365 LEKELKRERAKAA 377 (635)
Q Consensus 365 l~~efE~Er~kla 377 (635)
...+++.+.....
T Consensus 71 ~~~e~e~~L~~a~ 83 (175)
T PRK14472 71 ILRKNRELLAKAD 83 (175)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444443333
No 73
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=23.44 E-value=8e+02 Score=25.02 Aligned_cols=9 Identities=44% Similarity=0.305 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 006685 419 ASIAREKVA 427 (635)
Q Consensus 419 e~ia~ERv~ 427 (635)
..|.++|..
T Consensus 156 ~~I~~ek~~ 164 (204)
T PRK09174 156 ARIAAIKAK 164 (204)
T ss_pred HHHHHHHHH
Confidence 344444443
No 74
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=23.34 E-value=8.7e+02 Score=25.41 Aligned_cols=120 Identities=12% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 309 KVVLDFLQAIHAAEQRQAELDGRAFAEEKRALKEKYEKELRD-SRARELMRTEEAAILEKELKRERAKAAATIKSLQEKM 387 (635)
Q Consensus 309 k~~ld~i~Ai~aaek~Qae~Da~~f~eel~kl~~kye~eL~d-~aA~el~~~~~aa~l~~efE~Er~kla~a~K~l~e~~ 387 (635)
|-+++++.. ....=...--+|...+.+-.++.++|++++.+ +.....+.......-..+.++-..+.......+.+.+
T Consensus 28 kPi~~~l~e-R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a 106 (250)
T PRK14474 28 KPIIQVMKK-RQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEW 106 (250)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHH
Q 006685 388 EEKLRMELEQKENEAESKLKNA-LELAKAEIAASIAREKVAQI 429 (635)
Q Consensus 388 EekLk~ELeqvE~EregrL~kL-~elakAEl~e~ia~ERv~~L 429 (635)
...+..|.++...+-..+...+ -..+..=|...+..+...++
T Consensus 107 ~~~ie~Ek~~a~~~L~~~v~~la~~~A~kiL~~~~d~~~~~~l 149 (250)
T PRK14474 107 LEQLEREKQEFFKALQQQTGQQMVKIIRAALADLANATLEQQI 149 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
No 75
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=23.27 E-value=1.6e+03 Score=28.33 Aligned_cols=45 Identities=22% Similarity=0.286 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 006685 335 EEKRALKEKYEKELRDSRARELMRTEEAA---ILEKELKRERAKAAAT 379 (635)
Q Consensus 335 eel~kl~~kye~eL~d~aA~el~~~~~aa---~l~~efE~Er~kla~a 379 (635)
.|..++...|++-+++-..++--+.++.. ..++..|.||++-.+.
T Consensus 896 ~~~d~~~~~~e~~~~~l~sk~~q~~~e~er~rk~qE~~E~ER~rrEae 943 (1259)
T KOG0163|consen 896 SEYDVAVKNYEKLVKRLDSKEQQQIEELERLRKIQELAEAERKRREAE 943 (1259)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34444555566555554433333333332 2345666776665443
No 76
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=22.94 E-value=7.1e+02 Score=24.22 Aligned_cols=93 Identities=24% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHh--hhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 314 FLQAIHAAEQR--QAELDGRAFAEEKRALKEKYEKELRD-SRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEK 390 (635)
Q Consensus 314 ~i~Ai~aaek~--Qae~Da~~f~eel~kl~~kye~eL~d-~aA~el~~~~~aa~l~~efE~Er~kla~a~K~l~e~~Eek 390 (635)
|..-|..|++. +|+..-..|...|...+.+...-+.. +...+.+.....+..+++.+..+.+....+....+.+-..
T Consensus 55 I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~ 134 (174)
T PRK07352 55 ILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVIAQ 134 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhh
Q 006685 391 LRMELEQKENEAESKL 406 (635)
Q Consensus 391 Lk~ELeqvE~EregrL 406 (635)
|+.++-..-.+.-+++
T Consensus 135 l~~qi~~la~~~A~ki 150 (174)
T PRK07352 135 LRREAAELAIAKAESQ 150 (174)
T ss_pred HHHHHHHHHHHHHHHH
No 77
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.89 E-value=1.2e+03 Score=26.93 Aligned_cols=99 Identities=14% Similarity=0.171 Sum_probs=60.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---hHHHHHHHHhhhcCCCCchhHHHHHhcCchhHhhcCCCCHHHHH
Q 006685 446 FYARSEEARKSYFAHKLALGALALEDALSRGLP---IQKEIDTLYTYLDGIEKDSVLDLVLSSLPEETRYHGTETLLQLN 522 (635)
Q Consensus 446 v~arse~arks~~v~kLaLAa~ALk~AL~sg~P---f~~EL~aLk~la~g~~~D~lV~aaLsSLp~~aae~GVpT~aqL~ 522 (635)
+...........-++++..+..+|+.-+..|.. ..+=|+-++... +...-|+.+|++=+. ..-=.--++|-
T Consensus 303 l~~Id~s~~nkvvl~AyksGs~alK~il~~~~s~ekVed~Ldev~et~---d~~~EV~~~la~~~~---~~~d~~de~lE 376 (439)
T KOG2911|consen 303 LSQIDNSQTNKVVLQAYKSGSEALKAILAQGGSTEKVEDVLDEVNETL---DRQEEVEDALASYNV---NNIDFEDEDLE 376 (439)
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHHHhccCChhhHHHHHHHHHHHH---hhHHHHHHHHhcCCC---CCCccchHHHH
Confidence 333333344444556677888889888765443 344555555554 345566666665442 12233467899
Q ss_pred HHHHHHHHHHhH-hhcCCCCCCCHHHHHHH
Q 006685 523 QKFDALKGTLRH-FSLIPPGGGGILTHSLA 551 (635)
Q Consensus 523 ~RF~~Va~~~Rr-aSLVPe~gaGll~hllS 551 (635)
..+..+..+-.+ .++++|. +....+++-
T Consensus 377 kEL~~L~~D~~k~e~~~lp~-~~~sr~~~~ 405 (439)
T KOG2911|consen 377 KELEDLEADEKKNEDLVLPL-NSVSRDFLK 405 (439)
T ss_pred HHHHHHHhccccCCccCCCC-CCchHHHhh
Confidence 999988887776 8888887 345555544
No 78
>PRK00106 hypothetical protein; Provisional
Probab=22.66 E-value=1.3e+03 Score=27.20 Aligned_cols=13 Identities=31% Similarity=0.606 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHH
Q 006685 421 IAREKVAQIEKMA 433 (635)
Q Consensus 421 ia~ERv~~LekL~ 433 (635)
+-.++...|++++
T Consensus 151 ~~~~~~~~Le~~a 163 (535)
T PRK00106 151 LEEQKKAELERVA 163 (535)
T ss_pred HHHHHHHHHHHHh
Confidence 3445556666666
No 79
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=22.45 E-value=1.4e+03 Score=28.19 Aligned_cols=60 Identities=27% Similarity=0.329 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 006685 337 KRALKEKYEKELRDSRAR-----ELMRTEEAAILEKELKRERAKAAAT---IKSLQEKMEEKLRMELE 396 (635)
Q Consensus 337 l~kl~~kye~eL~d~aA~-----el~~~~~aa~l~~efE~Er~kla~a---~K~l~e~~EekLk~ELe 396 (635)
+.-|.+.|+..+.+--.- +..+..+-..+...++.|++-|.+- +|.+.+.-.+|.+.+|+
T Consensus 793 laiLaeqye~si~~m~~~q~lklde~qe~E~q~l~~ql~qEle~l~ayq~k~k~~~e~q~~re~~ele 860 (948)
T KOG0577|consen 793 LAILAEQYEQSINEMLQSQALKLDEAQEAECQVLREQLEQELELLNAYQSKIKMQAEEQHERELRELE 860 (948)
T ss_pred HHHHHHHhhhhHHHHhhccceechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777766552111 1122333345566666666665443 23334444444555553
No 80
>PRK10780 periplasmic chaperone; Provisional
Probab=21.99 E-value=7.3e+02 Score=24.02 Aligned_cols=13 Identities=15% Similarity=0.204 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 006685 333 FAEEKRALKEKYE 345 (635)
Q Consensus 333 f~eel~kl~~kye 345 (635)
++.+|+.+..+|.
T Consensus 55 ~q~el~~~~~elq 67 (165)
T PRK10780 55 RASELQRMETDLQ 67 (165)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 81
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=21.95 E-value=6.4e+02 Score=27.01 Aligned_cols=29 Identities=10% Similarity=0.176 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006685 564 QANDGIESVICRVESYLREGKLAEAADAL 592 (635)
Q Consensus 564 ~~GdDveSILARAE~~L~~GDLd~AarEL 592 (635)
++-.++-++|.-+.+.++.=.+..-++++
T Consensus 210 ~sPstL~a~L~~v~~~w~~~~~~~na~~I 238 (304)
T PF02646_consen 210 VSPSTLMALLRTVAYLWRQEAQNKNAEEI 238 (304)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557778888888888877777777766
No 82
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=21.81 E-value=7.1e+02 Score=23.78 Aligned_cols=93 Identities=14% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHh--hhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 314 FLQAIHAAEQR--QAELDGRAFAEEKRALKEKYEKELRD-SRARELMRTEEAAILEKELKRERAKAAATIKSLQEKMEEK 390 (635)
Q Consensus 314 ~i~Ai~aaek~--Qae~Da~~f~eel~kl~~kye~eL~d-~aA~el~~~~~aa~l~~efE~Er~kla~a~K~l~e~~Eek 390 (635)
|.+.|..|++. +|+.-...|+++|...+.+....+.+ +...+.+........+.+.+..+......+....+.+...
T Consensus 38 I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A~~~a~~~~~~a~~~a~~~~~~~~~~a~~~I~~ek~~a~~e 117 (159)
T PRK09173 38 IKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAEREAEALTAEAKRKTEEYVARRNKLAEQKIAQAETDAINA 117 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhh
Q 006685 391 LRMELEQKENEAESKL 406 (635)
Q Consensus 391 Lk~ELeqvE~EregrL 406 (635)
|++++-..-.+.-+++
T Consensus 118 l~~~~~~lA~~~A~ki 133 (159)
T PRK09173 118 VRSSAVDLAIAAAEKL 133 (159)
T ss_pred HHHHHHHHHHHHHHHH
No 83
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=21.75 E-value=1.3e+03 Score=26.87 Aligned_cols=64 Identities=19% Similarity=0.186 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHH-h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 006685 387 MEEKLRMELEQKENEAES-K--LKNALELAKAEIAASIAREKVAQIEKMAEANLHINALCMAFYARSEEARK 455 (635)
Q Consensus 387 ~EekLk~ELeqvE~Ereg-r--L~kL~elakAEl~e~ia~ERv~~LekL~eln~rv~aL~~Av~arse~ark 455 (635)
..+.++..+++.+.|... | ..+|..+ .++++.|+..-...|+.+..++.-.+.-.......+|+
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl-----~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrr 364 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSL-----ADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRR 364 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555443321 1 2333333 36666666666666666666655555444443333333
No 84
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=21.56 E-value=7.7e+02 Score=24.11 Aligned_cols=9 Identities=11% Similarity=0.394 Sum_probs=3.4
Q ss_pred HHHHHHHhh
Q 006685 398 KENEAESKL 406 (635)
Q Consensus 398 vE~EregrL 406 (635)
...|.+..+
T Consensus 112 A~~ea~~~~ 120 (167)
T PRK08475 112 TKDDIENLI 120 (167)
T ss_pred HHHHHHHHH
Confidence 333333333
No 85
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=21.32 E-value=2.7e+02 Score=27.68 Aligned_cols=70 Identities=11% Similarity=0.064 Sum_probs=56.3
Q ss_pred CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 006685 563 DQA-NDGIESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAITEQGLTFLQSYATCLSI 634 (635)
Q Consensus 563 ~~~-GdDveSILARAE~~L~~GDLd~AarELen~L~Gw~Ar~lA~DWL~eAR~RLEVeQAldvL~A~Aal~sL 634 (635)
+++ .++++.|.+.+-.+...|+|+.|.+.. ..|.=- ......-|+.=+=.+-...+--+.|.+|..+..|
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f-~~L~~~-Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L 98 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLF-QLLTIY-DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI 98 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHh-CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 567 889999999999999999999999887 355544 4556788888777777777777788888887765
No 86
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=21.19 E-value=7.6e+02 Score=23.94 Aligned_cols=24 Identities=13% Similarity=0.044 Sum_probs=11.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q 006685 325 QAELDGRAFAEEKRALKEKYEKEL 348 (635)
Q Consensus 325 Qae~Da~~f~eel~kl~~kye~eL 348 (635)
+|+.-...|.+.|...+.+....+
T Consensus 59 eAe~~~~~~e~~L~~A~~ea~~Ii 82 (167)
T PRK14475 59 EAQALLADVKAEREEAERQAAAML 82 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555544333
No 87
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.18 E-value=9.4e+02 Score=26.11 Aligned_cols=17 Identities=53% Similarity=0.534 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006685 387 MEEKLRMELEQKENEAE 403 (635)
Q Consensus 387 ~EekLk~ELeqvE~Ere 403 (635)
-|+||+.|.+++++|++
T Consensus 145 dEeR~~eEae~k~ee~~ 161 (299)
T KOG3054|consen 145 DEERLAEEAELKEEEKE 161 (299)
T ss_pred hHHHHHHHHHHhHHHHH
Confidence 56677777777664443
No 88
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=21.16 E-value=1.3e+02 Score=30.60 Aligned_cols=19 Identities=21% Similarity=0.039 Sum_probs=15.4
Q ss_pred hhhhHHHHHHHHHHHHhch
Q 006685 62 IFGATVVVGVGLIAYQNGY 80 (635)
Q Consensus 62 ~~g~~~~~~~~~~ay~~g~ 80 (635)
||||.|++-++|+-..++|
T Consensus 163 FiGGIVL~LGv~aI~ff~~ 181 (186)
T PF05283_consen 163 FIGGIVLTLGVLAIIFFLY 181 (186)
T ss_pred hhhHHHHHHHHHHHHHHHh
Confidence 5888888888888777777
No 89
>PRK14161 heat shock protein GrpE; Provisional
Probab=20.59 E-value=8.8e+02 Score=24.44 Aligned_cols=17 Identities=12% Similarity=0.309 Sum_probs=10.8
Q ss_pred ccccCCcHHHHHHHHHH
Q 006685 302 GYLSKDGKVVLDFLQAI 318 (635)
Q Consensus 302 ~~~~~~~k~~ld~i~Ai 318 (635)
..|-.+...++||++-|
T Consensus 4 ~~~~~~~~~~~~~~~~~ 20 (178)
T PRK14161 4 DNIENNEQTINDIAEEI 20 (178)
T ss_pred ccccccHHHHHHHHHhh
Confidence 34445667788887665
No 90
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=20.38 E-value=2.7e+02 Score=23.34 Aligned_cols=56 Identities=16% Similarity=0.047 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhh--HHHHHHHHHHHHHHHHHHHHHHH
Q 006685 569 IESVICRVESYLREGKLAEAADALEEGVRGSQAE--EIVFDWVRRARNRAITEQGLTFL 625 (635)
Q Consensus 569 veSILARAE~~L~~GDLd~AarELen~L~Gw~Ar--~lA~DWL~eAR~RLEVeQAldvL 625 (635)
.+..+..+..++..|+++.|...++..+... |. ....-|..-++......+--+.+
T Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~ 96 (119)
T TIGR02795 39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-PKSPKAPDALLKLGMSLQELGDKEKAK 96 (119)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-CCCCcccHHHHHHHHHHHHhCChHHHH
Confidence 5667778888999999999999885333332 33 23445777777776655433333
No 91
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=20.37 E-value=9.9e+02 Score=24.93 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=21.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 325 QAELDGRAFAEEKRALKEKYEKELRDSR 352 (635)
Q Consensus 325 Qae~Da~~f~eel~kl~~kye~eL~d~a 352 (635)
..+.-...+++++..++..|+.++.+-+
T Consensus 121 ~le~~i~~L~eEl~fl~~~heeEi~~L~ 148 (312)
T PF00038_consen 121 DLENQIQSLKEELEFLKQNHEEEIEELR 148 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 3344455599999999999999888733
Done!