Query 006685
Match_columns 635
No_of_seqs 166 out of 252
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 06:13:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006685.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006685hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 68.2 3.3E+02 0.011 36.7 24.2 11 308-318 1894-1904(3245)
2 1f5n_A Interferon-induced guan 61.7 1.4E+02 0.0048 33.4 15.4 18 331-348 434-451 (592)
3 3ghg_A Fibrinogen alpha chain; 55.9 1.1E+02 0.0038 34.2 12.9 18 432-449 140-157 (562)
4 1f5n_A Interferon-induced guan 52.2 2.9E+02 0.0099 30.9 16.9 13 418-430 532-544 (592)
5 2pmr_A Uncharacterized protein 43.1 40 0.0014 29.1 5.6 35 570-614 40-74 (87)
6 3vkg_A Dynein heavy chain, cyt 42.0 7.2E+02 0.025 33.7 19.1 21 419-439 2080-2100(3245)
7 3oja_B Anopheles plasmodium-re 34.6 4.5E+02 0.015 28.0 13.7 22 322-345 452-473 (597)
8 2dfs_A Myosin-5A; myosin-V, in 32.7 7.2E+02 0.025 29.8 16.1 9 333-341 958-966 (1080)
9 2dba_A Smooth muscle cell asso 26.3 1.8E+02 0.006 23.2 6.7 31 566-596 25-55 (148)
10 2oo2_A Hypothetical protein AF 24.1 1.4E+02 0.0047 25.8 5.8 34 570-613 36-69 (86)
11 3iox_A AGI/II, PA; alpha helix 23.4 7.9E+02 0.027 27.3 16.1 21 323-345 6-26 (497)
12 2i1j_A Moesin; FERM, coiled-co 22.6 88 0.003 34.8 5.5 33 422-454 404-436 (575)
13 2crb_A Nuclear receptor bindin 21.6 69 0.0024 28.4 3.4 42 574-625 20-61 (97)
14 3iyk_A VP5; icosahedral virus; 20.9 9E+02 0.031 27.0 19.3 48 431-480 190-238 (526)
15 2kc7_A BFR218_protein; tetratr 20.6 1E+02 0.0034 23.6 4.0 28 566-593 31-59 (99)
16 4efa_E V-type proton ATPase su 20.2 5.8E+02 0.02 24.5 16.3 41 333-379 13-53 (233)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=68.21 E-value=3.3e+02 Score=36.74 Aligned_cols=11 Identities=27% Similarity=0.609 Sum_probs=6.1
Q ss_pred cHHHHHHHHHH
Q 006685 308 GKVVLDFLQAI 318 (635)
Q Consensus 308 ~k~~ld~i~Ai 318 (635)
=+-+|++|.-.
T Consensus 1894 P~syLeli~~y 1904 (3245)
T 3vkg_A 1894 PRHYLDFINQV 1904 (3245)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34466666643
No 2
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=61.70 E-value=1.4e+02 Score=33.39 Aligned_cols=18 Identities=39% Similarity=0.589 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006685 331 RAFAEEKRALKEKYEKEL 348 (635)
Q Consensus 331 ~~f~eel~kl~~kye~eL 348 (635)
..|..+++.+..+|..+-
T Consensus 434 ~~~~~~~~~~~~~Y~~~~ 451 (592)
T 1f5n_A 434 RLFVQKLQDLKKKYYEEP 451 (592)
T ss_dssp HHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 358888888888887654
No 3
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=55.93 E-value=1.1e+02 Score=34.21 Aligned_cols=18 Identities=6% Similarity=0.097 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 006685 432 MAEANLHINALCMAFYAR 449 (635)
Q Consensus 432 L~eln~rv~aL~~Av~ar 449 (635)
|.++..+|+.|+.+|+..
T Consensus 140 Ledq~~kIQRLEvDIdiq 157 (562)
T 3ghg_A 140 VRAQLVDMKRLEVDIDIK 157 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 446667777777777763
No 4
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=52.19 E-value=2.9e+02 Score=30.89 Aligned_cols=13 Identities=8% Similarity=0.373 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 006685 418 AASIAREKVAQIE 430 (635)
Q Consensus 418 ~e~ia~ERv~~Le 430 (635)
.+++..||...+.
T Consensus 532 ~~kme~~~~~~~~ 544 (592)
T 1f5n_A 532 TEKMENDRVQLLK 544 (592)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455555554443
No 5
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=43.06 E-value=40 Score=29.12 Aligned_cols=35 Identities=11% Similarity=0.061 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHHH
Q 006685 570 ESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARN 614 (635)
Q Consensus 570 eSILARAE~~L~~GDLd~AarELen~L~Gw~Ar~lA~DWL~eAR~ 614 (635)
.+-+..++++++.||+..|+..+. + +-.||+.+|.
T Consensus 40 ~~Y~~Da~~fl~kGD~v~Ala~is-----Y-----a~GwLDAlR~ 74 (87)
T 2pmr_A 40 LNYRDDSVYYLEKGDHITSFGCIT-----Y-----AHGLLDSLRM 74 (87)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH-----H-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH-----H-----HHHHHHHHHH
Confidence 356788999999999999999995 4 4578988664
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=41.97 E-value=7.2e+02 Score=33.68 Aligned_cols=21 Identities=10% Similarity=0.105 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006685 419 ASIAREKVAQIEKMAEANLHI 439 (635)
Q Consensus 419 e~ia~ERv~~LekL~eln~rv 439 (635)
..+..||..=-+.+..+..++
T Consensus 2080 ~gL~~Ek~RW~~~~~~l~~~~ 2100 (3245)
T 3vkg_A 2080 DNLNSERGRWEQQSENFNTQM 2100 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhccccHHHHHHHHHHHH
Confidence 455555554444444444433
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.55 E-value=4.5e+02 Score=28.02 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=12.1
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHH
Q 006685 322 EQRQAELDGRAFAEEKRALKEKYE 345 (635)
Q Consensus 322 ek~Qae~Da~~f~eel~kl~~kye 345 (635)
++.+++++- ...++++++++..
T Consensus 452 e~l~~e~~~--~~~~i~~l~~~~~ 473 (597)
T 3oja_B 452 EQLEAEVNE--LRAEVQQLTNEQI 473 (597)
T ss_dssp --CCHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHH
Confidence 444555443 5677777777744
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=32.67 E-value=7.2e+02 Score=29.79 Aligned_cols=9 Identities=22% Similarity=0.612 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 006685 333 FAEEKRALK 341 (635)
Q Consensus 333 f~eel~kl~ 341 (635)
...|..+|+
T Consensus 958 ~~~e~~~L~ 966 (1080)
T 2dfs_A 958 YSTETEKLR 966 (1080)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444543
No 9
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.27 E-value=1.8e+02 Score=23.24 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 006685 566 NDGIESVICRVESYLREGKLAEAADALEEGV 596 (635)
Q Consensus 566 GdDveSILARAE~~L~~GDLd~AarELen~L 596 (635)
..+....+..+..++..|+++.|+..++..+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~ 55 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQAL 55 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4456666666666666666666666664333
No 10
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=24.14 E-value=1.4e+02 Score=25.79 Aligned_cols=34 Identities=21% Similarity=0.421 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHH
Q 006685 570 ESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRAR 613 (635)
Q Consensus 570 eSILARAE~~L~~GDLd~AarELen~L~Gw~Ar~lA~DWL~eAR 613 (635)
.+-+..++++|+.||+..|+..+. + +-.||+..+
T Consensus 36 ~~Y~~Da~~fl~kGD~v~Ala~is-----Y-----a~GwLDAg~ 69 (86)
T 2oo2_A 36 EAYISDSRYFLEKGDLVRAFECVV-----W-----AWAWLEIGL 69 (86)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH-----H-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH-----H-----HHHHHHHHH
Confidence 355678899999999999999995 4 446887744
No 11
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=23.39 E-value=7.9e+02 Score=27.26 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=12.2
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHH
Q 006685 323 QRQAELDGRAFAEEKRALKEKYE 345 (635)
Q Consensus 323 k~Qae~Da~~f~eel~kl~~kye 345 (635)
.+||++.+ |+.||.+.+..++
T Consensus 6 ~yq~~la~--yq~elarvqkana 26 (497)
T 3iox_A 6 DYQAKLTA--YQTELARVQKANA 26 (497)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHH
Confidence 35666655 6666666555433
No 12
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=22.63 E-value=88 Score=34.76 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006685 422 AREKVAQIEKMAEANLHINALCMAFYARSEEAR 454 (635)
Q Consensus 422 a~ERv~~LekL~eln~rv~aL~~Av~arse~ar 454 (635)
+.||..--.++.+....+..|..+...+.++++
T Consensus 404 ~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~ 436 (575)
T 2i1j_A 404 AAERQKLEDEIRAKQEEVSRIQQEVELKDSETR 436 (575)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445554455666778888888887777665544
No 13
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=21.65 E-value=69 Score=28.37 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 574 CRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAITEQGLTFL 625 (635)
Q Consensus 574 ARAE~~L~~GDLd~AarELen~L~Gw~Ar~lA~DWL~eAR~RLEVeQAldvL 625 (635)
.||+.+|..|.++.|+.... . +.++|.+|=+.-..+|++.-|
T Consensus 20 RrAe~ll~~gkydeAIech~-----k-----Aa~yL~eAmkltqs~qa~~SL 61 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHR-----K-----ATTYLSEAMKLTESEQAHLSL 61 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHH-----H-----HHHHHHHHHTTCCCHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHH-----H-----HHHHHHHHHHhhccHHHHHHH
Confidence 47899999999999988774 2 344555555544444444433
No 14
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=20.94 E-value=9e+02 Score=26.98 Aligned_cols=48 Identities=23% Similarity=0.209 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHhcCCChH
Q 006685 431 KMAEANLHINALCMAFYARSEEARKSYFAHKLA-LGALALEDALSRGLPIQ 480 (635)
Q Consensus 431 kL~eln~rv~aL~~Av~arse~arks~~v~kLa-LAa~ALk~AL~sg~Pf~ 480 (635)
=+.+++.++.+|..|++. ......-+++++.. +++.-++.+. .-.||.
T Consensus 190 mi~~yr~k~~aL~~aIe~-Er~~~~EEAIqe~~dmsaeI~E~Aa-eEVP~v 238 (526)
T 3iyk_A 190 MVKEYRDKIDALKNAIEV-ERDGMQEEAIQEIAGMTADVLEAAS-EEVPLI 238 (526)
T ss_pred HHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHhcchHHHHHHHh-hhCCcc
Confidence 355888899999999887 33455566666654 3334444333 244443
No 15
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=20.63 E-value=1e+02 Score=23.61 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=20.1
Q ss_pred CCCHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 006685 566 NDGIE-SVICRVESYLREGKLAEAADALE 593 (635)
Q Consensus 566 GdDve-SILARAE~~L~~GDLd~AarELe 593 (635)
.++.. ..+.++..+...|+++.|+..+.
T Consensus 31 p~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 59 (99)
T 2kc7_A 31 PVGKDEAYYLMGNAYRKLGDWQKALNNYQ 59 (99)
T ss_dssp SSTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34566 77777777777788887777774
No 16
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=20.20 E-value=5.8e+02 Score=24.46 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006685 333 FAEEKRALKEKYEKELRDSRARELMRTEEAAILEKELKRERAKAAAT 379 (635)
Q Consensus 333 f~eel~kl~~kye~eL~d~aA~el~~~~~aa~l~~efE~Er~kla~a 379 (635)
-+.++++|.....+|=++ .|.+. ...-++||+.|+.++...
T Consensus 13 v~~~i~~m~~fI~qEA~e-KA~EI-----~~kAeeE~~~ek~~~v~~ 53 (233)
T 4efa_E 13 VNDELNKMQAFIRKEAEE-KAKEI-----QLKADQEYEIEKTNIVRN 53 (233)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 466777777665544222 22222 233456788888776554
Done!