Query 006685
Match_columns 635
No_of_seqs 166 out of 252
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 06:13:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006685.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006685hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2pmra1 a.8.11.1 (A:3-77) Unch 30.0 43 0.0031 26.4 5.6 34 570-613 36-69 (75)
2 d2crba1 a.7.16.1 (A:8-90) Nucl 23.5 29 0.0021 28.0 3.4 41 574-624 13-53 (83)
3 d2oo2a1 a.8.11.1 (A:1-75) Hypo 21.5 82 0.006 24.7 5.8 24 570-593 34-57 (75)
4 d1sr2a_ a.24.10.4 (A:) Sensor- 19.0 46 0.0034 26.8 4.0 49 568-618 43-91 (116)
5 d1elwa_ a.118.8.1 (A:) Hop {Hu 14.9 1.1E+02 0.0081 23.4 5.3 34 566-599 68-101 (117)
6 d2c2la1 a.118.8.1 (A:24-224) S 13.8 2.6E+02 0.019 21.9 7.6 31 564-594 67-97 (201)
7 d2ezla_ a.4.1.2 (A:) Ibeta sub 13.6 3.1E+02 0.022 22.1 8.1 31 512-543 62-95 (99)
8 d2e74g1 f.23.26.1 (G:9-35) Pet 11.5 60 0.0044 20.8 2.0 16 62-77 2-19 (27)
9 d2fbna1 a.118.8.1 (A:22-174) P 9.9 2.1E+02 0.016 22.7 5.7 51 565-617 97-149 (153)
10 d2a0ba_ a.24.10.1 (A:) Aerobic 9.6 68 0.0049 25.3 2.2 31 568-599 34-64 (118)
No 1
>d2pmra1 a.8.11.1 (A:3-77) Uncharacterized protein MTH1690 {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=29.97 E-value=43 Score=26.39 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHH
Q 006685 570 ESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRAR 613 (635)
Q Consensus 570 eSILARAE~~L~~GDLd~AarELen~L~Gw~Ar~lA~DWL~eAR 613 (635)
++-+.-+++++..||+..|...++ + +..||+..|
T Consensus 36 ~~Y~~Da~~f~~~gd~v~A~~~i~-----Y-----A~g~lDAlr 69 (75)
T d2pmra1 36 LNYRDDSVYYLEKGDHITSFGCIT-----Y-----AHGLLDSLR 69 (75)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH-----H-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChhHHHHHHH-----H-----HHHHHHHHH
Confidence 456778899999999999999994 4 446777654
No 2
>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.54 E-value=29 Score=27.98 Aligned_cols=41 Identities=22% Similarity=0.218 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 006685 574 CRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAITEQGLTF 624 (635)
Q Consensus 574 ARAE~~L~~GDLd~AarELen~L~Gw~Ar~lA~DWL~eAR~RLEVeQAldv 624 (635)
.|||.+|..|.+|.|+.+.. . +.++|.+|=.--...+++..
T Consensus 13 RrAer~l~~~rydeAIech~-----k-----A~~yl~eA~klt~s~~~l~S 53 (83)
T d2crba1 13 RRADRLLAAGKYEEAISCHR-----K-----ATTYLSEAMKLTESEQAHLS 53 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHHH-----H-----HHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH-----H-----HHHHHHHHHhCCCcHHHHHH
Confidence 37899999999999998874 2 34555555544444444443
No 3
>d2oo2a1 a.8.11.1 (A:1-75) Hypothetical protein AF1782 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=21.53 E-value=82 Score=24.69 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 006685 570 ESVICRVESYLREGKLAEAADALE 593 (635)
Q Consensus 570 eSILARAE~~L~~GDLd~AarELe 593 (635)
++-++.++++|..||+..|+..++
T Consensus 34 ~~Y~~Da~~fl~~gD~v~A~~~~~ 57 (75)
T d2oo2a1 34 EAYISDSRYFLEKGDLVRAFECVV 57 (75)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 456778899999999999999994
No 4
>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=19.01 E-value=46 Score=26.76 Aligned_cols=49 Identities=8% Similarity=0.008 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhhhHHHHHHHHHHHHHHHH
Q 006685 568 GIESVICRVESYLREGKLAEAADALEEGVRGSQAEEIVFDWVRRARNRAIT 618 (635)
Q Consensus 568 DveSILARAE~~L~~GDLd~AarELen~L~Gw~Ar~lA~DWL~eAR~RLEV 618 (635)
++..-++..+.++..+|++.+.+.. -.|+|. +..+....+.+.=..||.
T Consensus 43 ~~p~~l~~L~~a~~~~D~~~l~~~a-H~LKGs-~~~~Ga~~l~~~~~~lE~ 91 (116)
T d1sr2a_ 43 TVPDDVKRLYTEAATSDFAALAQTA-HRLKGV-FAMLNLVPGKQLCETLEH 91 (116)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHH-HHHHHH-HHHHTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHCcCHHHHHHHH-HHHHHH-HHHcCchHHHHHHHHHHH
Confidence 5667899999999999999999999 899998 888888888777777664
No 5
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.88 E-value=1.1e+02 Score=23.38 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCh
Q 006685 566 NDGIESVICRVESYLREGKLAEAADALEEGVRGS 599 (635)
Q Consensus 566 GdDveSILARAE~~L~~GDLd~AarELen~L~Gw 599 (635)
.+++.+.+.++..++..|+++.|+..+...+.--
T Consensus 68 p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 68 PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 101 (117)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4578899999999999999999999997665543
No 6
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.76 E-value=2.6e+02 Score=21.94 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 006685 564 QANDGIESVICRVESYLREGKLAEAADALEE 594 (635)
Q Consensus 564 ~~GdDveSILARAE~~L~~GDLd~AarELen 594 (635)
...+.+.+.+.++..++..|+++.|+..+..
T Consensus 67 l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~ 97 (201)
T d2c2la1 67 LDGQSVKAHFFLGQCQLEMESYDEAIANLQR 97 (201)
T ss_dssp SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3567899999999999999999999999853
No 7
>d2ezla_ a.4.1.2 (A:) Ibeta subdomain of the mu end DNA-binding domain of phage mu transposase {Bacteriophage mu [TaxId: 10677]}
Probab=13.62 E-value=3.1e+02 Score=22.10 Aligned_cols=31 Identities=13% Similarity=0.083 Sum_probs=21.4
Q ss_pred hcCCCCHHHHHHHHHHHHHHH---hHhhcCCCCCC
Q 006685 512 YHGTETLLQLNQKFDALKGTL---RHFSLIPPGGG 543 (635)
Q Consensus 512 e~GVpT~aqL~~RF~~Va~~~---RraSLVPe~ga 543 (635)
+.| .|...|+++|..|..-- .-++|+|..|.
T Consensus 62 ~~~-vs~~TL~nW~~~V~g~~r~DWLpaLl~~~g~ 95 (99)
T d2ezla_ 62 HYQ-VSASTLRDKYYQVQKFAKPDWAAALVDGRGA 95 (99)
T ss_dssp HSS-SCHHHHHHHHHHHHTSCSTTHHHHTTSCSCC
T ss_pred HhC-CCHHHHHHHHHHHCCCCHHHHHHHHccCccc
Confidence 344 47888999999888744 33667776543
No 8
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.51 E-value=60 Score=20.78 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=10.2
Q ss_pred hhhhHH--HHHHHHHHHH
Q 006685 62 IFGATV--VVGVGLIAYQ 77 (635)
Q Consensus 62 ~~g~~~--~~~~~~~ay~ 77 (635)
++|-++ ++|-+.||||
T Consensus 2 vlgli~~tl~glf~aayq 19 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 355444 3567788997
No 9
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}
Probab=9.87 E-value=2.1e+02 Score=22.70 Aligned_cols=51 Identities=14% Similarity=0.065 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCChhh--hHHHHHHHHHHHHHHH
Q 006685 565 ANDGIESVICRVESYLREGKLAEAADALEEGVRGSQA--EEIVFDWVRRARNRAI 617 (635)
Q Consensus 565 ~GdDveSILARAE~~L~~GDLd~AarELen~L~Gw~A--r~lA~DWL~eAR~RLE 617 (635)
..+++.+...++..+...|+++.|+..++..|.-- | ..+ ..=+..++.+|.
T Consensus 97 ~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~-~~~l~~~~~kl~ 149 (153)
T d2fbna1 97 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDI-RNSYELCVNKLK 149 (153)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHH-HHHHHHHHHHHH
T ss_pred cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH-HHHHHHHHHHHH
Confidence 44578899999999999999999999996555432 3 222 233455555543
No 10
>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]}
Probab=9.56 E-value=68 Score=25.26 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhcCCCh
Q 006685 568 GIESVICRVESYLREGKLAEAADALEEGVRGS 599 (635)
Q Consensus 568 DveSILARAE~~L~~GDLd~AarELen~L~Gw 599 (635)
++...+...+.++..+|++.+.+.. ..|+|.
T Consensus 34 ~~~~~l~~l~~a~~~~d~~~~~~~a-H~LKgs 64 (118)
T d2a0ba_ 34 MMPGYVSVLESNLTAQDKKGIVEEG-HKIKGA 64 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHH
T ss_pred HhHHHHHHHHHHHHCCCHHHHHHHH-HHHHHH
Confidence 3445667777777777777777776 577765
Done!