Query 006686
Match_columns 635
No_of_seqs 447 out of 2377
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 13:01:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0317 SpoT Guanosine polypho 100.0 2E-130 4E-135 1102.1 44.2 446 124-627 6-451 (701)
2 PRK10872 relA (p)ppGpp synthet 100.0 2E-126 4E-131 1085.1 44.4 456 124-628 14-469 (743)
3 PRK11092 bifunctional (p)ppGpp 100.0 9E-124 2E-128 1065.4 46.6 440 138-628 12-451 (702)
4 TIGR00691 spoT_relA (p)ppGpp s 100.0 1E-116 3E-121 1008.5 44.1 425 152-628 1-425 (683)
5 KOG1157 Predicted guanosine po 100.0 2.7E-79 5.8E-84 637.2 22.1 435 141-631 69-530 (543)
6 PF13328 HD_4: HD domain; PDB: 100.0 1.2E-39 2.6E-44 310.3 3.9 153 152-310 1-153 (153)
7 PF04607 RelA_SpoT: Region fou 99.9 2E-27 4.4E-32 215.0 10.1 110 375-496 1-113 (115)
8 cd05399 NT_Rel-Spo_like Nucleo 99.9 7.6E-27 1.6E-31 215.9 12.0 107 370-488 20-129 (129)
9 COG2357 PpGpp synthetase catal 99.9 5.2E-27 1.1E-31 233.9 11.6 117 371-499 53-179 (231)
10 PF02824 TGS: TGS domain; Int 99.7 1E-16 2.2E-21 130.2 6.1 60 565-624 1-60 (60)
11 cd01666 TGS_DRG_C TGS_DRG_C: 99.0 7.8E-10 1.7E-14 93.9 6.0 52 573-624 17-75 (75)
12 cd01668 TGS_RelA_SpoT TGS_RelA 98.9 3E-09 6.4E-14 84.9 7.7 60 565-624 1-60 (60)
13 cd01669 TGS_Ygr210_C TGS_Ygr21 98.9 3.8E-09 8.1E-14 90.0 5.7 51 573-624 23-76 (76)
14 cd01616 TGS The TGS domain, na 98.7 7.6E-08 1.7E-12 75.0 7.5 59 566-624 2-60 (60)
15 cd01667 TGS_ThrRS_N TGS _ThrRS 98.6 2.2E-07 4.8E-12 72.9 7.7 60 566-625 2-61 (61)
16 PRK00413 thrS threonyl-tRNA sy 98.4 5.4E-07 1.2E-11 104.4 6.7 70 564-633 1-70 (638)
17 PRK12444 threonyl-tRNA synthet 98.1 3.6E-06 7.9E-11 97.8 6.1 72 562-633 3-74 (639)
18 TIGR03276 Phn-HD phosphonate d 98.1 8.3E-06 1.8E-10 80.2 7.5 71 160-230 13-101 (179)
19 PLN02908 threonyl-tRNA synthet 98.1 8E-06 1.7E-10 95.7 8.7 95 526-633 26-121 (686)
20 cd04938 TGS_Obg-like TGS_Obg-l 98.0 7.9E-06 1.7E-10 69.7 5.4 52 573-624 24-76 (76)
21 PRK09602 translation-associate 97.9 1.4E-05 3.1E-10 87.9 5.2 51 574-625 342-395 (396)
22 COG1163 DRG Predicted GTPase [ 97.4 0.00025 5.3E-09 75.4 6.1 70 555-624 279-364 (365)
23 PRK05659 sulfur carrier protei 97.4 0.00051 1.1E-08 56.4 6.8 53 571-625 6-62 (66)
24 cd00565 ThiS ThiaminS ubiquiti 97.3 0.0005 1.1E-08 56.5 6.0 53 571-625 5-61 (65)
25 PRK06437 hypothetical protein; 97.3 0.00084 1.8E-08 55.9 7.0 60 564-625 4-63 (67)
26 PRK07440 hypothetical protein; 97.1 0.0013 2.9E-08 55.2 6.6 59 564-625 4-66 (70)
27 PRK06944 sulfur carrier protei 97.0 0.0021 4.6E-08 52.5 6.4 52 571-625 6-61 (65)
28 COG2104 ThiS Sulfur transfer p 96.9 0.0028 6E-08 53.1 6.8 53 571-625 8-64 (68)
29 PRK08364 sulfur carrier protei 96.9 0.0029 6.2E-08 53.0 6.4 50 574-625 17-66 (70)
30 PRK07696 sulfur carrier protei 96.8 0.0028 6E-08 52.7 6.0 53 571-625 6-63 (67)
31 TIGR01683 thiS thiamine biosyn 96.8 0.0037 8.1E-08 51.2 6.6 53 571-625 4-60 (64)
32 PRK08053 sulfur carrier protei 96.8 0.0043 9.3E-08 51.3 6.7 53 571-625 6-62 (66)
33 KOG1637 Threonyl-tRNA syntheta 96.6 0.00058 1.3E-08 75.1 0.4 64 569-634 5-69 (560)
34 PRK06488 sulfur carrier protei 96.4 0.0081 1.8E-07 49.3 6.2 52 571-625 6-61 (65)
35 PTZ00258 GTP-binding protein; 96.4 0.0044 9.5E-08 68.3 5.9 62 564-625 304-387 (390)
36 PRK01777 hypothetical protein; 96.4 0.0065 1.4E-07 54.1 5.7 53 573-625 19-76 (95)
37 PLN02799 Molybdopterin synthas 96.2 0.011 2.3E-07 50.7 6.0 55 571-625 19-78 (82)
38 PRK06083 sulfur carrier protei 95.9 0.016 3.4E-07 50.6 5.6 53 571-625 24-80 (84)
39 PRK05863 sulfur carrier protei 95.8 0.018 3.9E-07 47.5 5.3 53 571-625 6-61 (65)
40 cd00754 MoaD Ubiquitin domain 95.8 0.024 5.2E-07 47.8 6.2 53 573-625 18-76 (80)
41 PF14451 Ub-Mut7C: Mut7-C ubiq 95.5 0.03 6.5E-07 48.5 5.6 48 574-625 26-76 (81)
42 PF02597 ThiS: ThiS family; I 95.3 0.035 7.6E-07 46.3 5.2 54 572-625 13-73 (77)
43 PRK11840 bifunctional sulfur c 94.6 0.076 1.6E-06 57.0 6.6 53 571-625 6-62 (326)
44 PF03658 Ub-RnfH: RnfH family 94.2 0.048 1E-06 47.6 3.4 49 574-624 17-72 (84)
45 PRK14707 hypothetical protein; 93.4 0.53 1.2E-05 60.4 11.5 153 321-499 2263-2424(2710)
46 TIGR01682 moaD molybdopterin c 93.2 0.28 6E-06 41.7 6.5 53 573-625 18-76 (80)
47 PRK09601 GTP-binding protein Y 92.3 0.22 4.7E-06 54.6 5.6 61 564-624 280-362 (364)
48 TIGR01687 moaD_arch MoaD famil 90.0 0.87 1.9E-05 39.3 6.2 52 573-625 18-84 (88)
49 PF06071 YchF-GTPase_C: Protei 89.1 0.46 9.9E-06 41.5 3.7 52 573-624 13-83 (84)
50 PRK11130 moaD molybdopterin sy 86.2 2.5 5.4E-05 36.2 6.5 47 579-625 24-77 (81)
51 PRK14707 hypothetical protein; 85.2 5.9 0.00013 51.6 11.3 203 274-498 2416-2654(2710)
52 PRK09169 hypothetical protein; 82.8 12 0.00026 49.4 12.9 109 372-498 1915-2033(2316)
53 PRK12703 tRNA 2'-O-methylase; 81.8 5.8 0.00013 43.3 8.5 58 171-228 188-257 (339)
54 smart00471 HDc Metal dependent 80.5 0.93 2E-05 39.1 1.6 37 168-204 2-44 (124)
55 COG2914 Uncharacterized protei 80.1 2.8 6E-05 37.5 4.3 53 573-625 19-76 (99)
56 KOG1486 GTP-binding protein DR 79.2 2.6 5.6E-05 44.2 4.5 52 573-624 305-363 (364)
57 PF01966 HD: HD domain; Inter 75.7 1.2 2.5E-05 39.1 0.8 32 172-203 2-40 (122)
58 cd04867 TGS_YchF_C TGS_YchF_C: 74.7 2.9 6.3E-05 36.5 2.9 51 573-623 13-82 (83)
59 COG1418 Predicted HD superfami 72.5 3.7 7.9E-05 42.1 3.5 37 167-203 33-74 (222)
60 COG1977 MoaD Molybdopterin con 68.1 7.2 0.00016 33.8 3.9 30 596-625 51-80 (84)
61 COG4341 Predicted HD phosphohy 67.6 5.2 0.00011 39.2 3.2 35 166-200 24-60 (186)
62 cd01764 Urm1 Urm1-like ubuitin 65.5 16 0.00034 32.4 5.7 47 579-625 27-90 (94)
63 COG2316 Predicted hydrolase (H 64.7 8.1 0.00018 38.0 3.9 59 169-227 46-118 (212)
64 cd00077 HDc Metal dependent ph 64.6 3.8 8.3E-05 35.9 1.6 35 170-204 2-44 (145)
65 TIGR03401 cyanamide_fam HD dom 62.4 12 0.00026 38.6 4.9 50 145-201 37-95 (228)
66 KOG1487 GTP-binding protein DR 60.3 5.6 0.00012 42.0 2.1 61 564-624 282-357 (358)
67 PF14453 ThiS-like: ThiS-like 59.6 27 0.00059 28.4 5.5 50 571-624 6-55 (57)
68 PRK10119 putative hydrolase; P 59.4 20 0.00044 37.0 6.0 52 148-202 6-62 (231)
69 PF11976 Rad60-SLD: Ubiquitin- 59.1 21 0.00046 29.2 5.0 59 565-623 3-71 (72)
70 PRK13480 3'-5' exoribonuclease 57.2 30 0.00065 37.4 7.0 74 124-201 106-196 (314)
71 TIGR00277 HDIG uncharacterized 53.4 15 0.00032 29.9 3.2 33 170-202 4-41 (80)
72 COG1713 Predicted HD superfami 52.0 13 0.00029 37.2 3.1 36 170-205 17-57 (187)
73 PTZ00305 NADH:ubiquinone oxido 50.1 32 0.00068 36.9 5.7 57 564-621 68-141 (297)
74 TIGR00488 putative HD superfam 49.8 14 0.0003 35.4 2.8 32 171-202 9-45 (158)
75 TIGR02988 YaaA_near_RecF S4 do 49.7 21 0.00045 28.5 3.4 23 600-622 35-58 (59)
76 smart00363 S4 S4 RNA-binding d 48.4 18 0.00039 27.2 2.7 24 600-623 27-51 (60)
77 TIGR00295 conserved hypothetic 47.8 19 0.00041 35.0 3.4 57 169-226 12-86 (164)
78 PF13510 Fer2_4: 2Fe-2S iron-s 46.9 13 0.00028 32.0 1.9 52 570-621 8-78 (82)
79 TIGR00384 dhsB succinate dehyd 46.8 22 0.00048 36.1 3.9 50 575-624 19-86 (220)
80 cd01809 Scythe_N Ubiquitin-lik 45.9 84 0.0018 25.3 6.6 61 564-624 2-71 (72)
81 COG1078 HD superfamily phospho 45.4 11 0.00023 42.5 1.4 50 145-200 28-95 (421)
82 PRK00106 hypothetical protein; 45.2 19 0.00042 41.7 3.5 35 168-202 348-387 (535)
83 cd01806 Nedd8 Nebb8-like ubiq 44.2 67 0.0015 26.2 5.8 62 564-625 2-72 (76)
84 PF01479 S4: S4 domain; Inter 43.8 20 0.00043 27.2 2.3 21 600-620 27-48 (48)
85 TIGR00092 GTP-binding protein 41.0 21 0.00045 39.5 2.8 61 564-624 284-366 (368)
86 cd00196 UBQ Ubiquitin-like pro 41.0 1E+02 0.0022 22.2 6.0 58 567-624 2-68 (69)
87 PRK07569 bidirectional hydroge 37.6 57 0.0012 33.5 5.2 54 570-623 8-77 (234)
88 PRK12704 phosphodiesterase; Pr 36.8 34 0.00074 39.5 3.8 34 168-201 333-371 (520)
89 cd00165 S4 S4/Hsp/ tRNA synthe 36.2 40 0.00086 26.1 3.1 25 600-624 27-52 (70)
90 PRK12705 hypothetical protein; 34.1 35 0.00075 39.4 3.3 35 168-202 321-360 (508)
91 PF12917 HD_2: HD containing h 33.2 20 0.00043 36.7 1.0 99 171-278 30-142 (215)
92 TIGR03319 YmdA_YtgF conserved 33.0 37 0.00081 39.2 3.3 31 171-201 330-365 (514)
93 PRK10885 cca multifunctional t 32.1 1.7E+02 0.0038 32.7 8.3 100 102-202 150-259 (409)
94 cd01763 Sumo Small ubiquitin-r 31.9 1.8E+02 0.004 25.0 6.8 61 564-624 13-82 (87)
95 cd01760 RBD Ubiquitin-like dom 31.2 1.1E+02 0.0025 25.9 5.2 26 565-590 2-29 (72)
96 PRK07152 nadD putative nicotin 30.8 35 0.00076 37.0 2.5 34 169-202 195-233 (342)
97 PF05153 DUF706: Family of unk 30.4 68 0.0015 33.6 4.3 52 149-200 41-93 (253)
98 COG1034 NuoG NADH dehydrogenas 29.7 55 0.0012 39.2 4.0 51 571-621 7-73 (693)
99 COG1188 Ribosome-associated he 29.0 59 0.0013 29.5 3.2 26 601-626 36-61 (100)
100 PF00498 FHA: FHA domain; Int 27.6 40 0.00087 27.0 1.8 23 600-622 43-67 (68)
101 cd01803 Ubiquitin Ubiquitin. U 26.2 2.7E+02 0.0059 22.5 6.6 60 565-624 3-71 (76)
102 cd01810 ISG15_repeat2 ISG15 ub 26.1 1.8E+02 0.0038 24.1 5.5 60 565-624 1-69 (74)
103 PRK08493 NADH dehydrogenase su 25.3 1.1E+02 0.0025 37.4 5.7 55 570-624 6-74 (819)
104 PRK01286 deoxyguanosinetriphos 24.3 1E+02 0.0023 33.7 4.7 57 145-201 32-98 (336)
105 PRK03007 deoxyguanosinetriphos 24.1 1.1E+02 0.0024 34.7 4.9 58 144-201 39-106 (428)
106 PF14009 DUF4228: Domain of un 23.3 1.4E+02 0.0031 28.2 5.0 61 562-626 15-81 (181)
107 smart00455 RBD Raf-like Ras-bi 22.9 1.4E+02 0.003 25.1 4.1 48 565-612 2-55 (70)
108 cd01769 UBL Ubiquitin-like dom 22.7 2.1E+02 0.0045 22.4 5.1 55 569-623 4-67 (69)
109 COG4064 MtrG Tetrahydromethano 22.3 1.8E+02 0.004 24.7 4.6 43 318-360 6-48 (75)
110 COG1578 Uncharacterized conser 22.1 3E+02 0.0065 29.4 7.2 114 271-393 11-138 (285)
111 PTZ00044 ubiquitin; Provisiona 21.8 2E+02 0.0043 23.6 5.0 61 564-624 2-71 (76)
112 cd01797 NIRF_N amino-terminal 21.6 4.5E+02 0.0097 22.2 7.2 66 564-629 2-78 (78)
113 PRK07860 NADH dehydrogenase su 20.8 1.4E+02 0.003 36.4 5.3 53 570-622 9-77 (797)
114 PF02196 RBD: Raf-like Ras-bin 20.4 1.1E+02 0.0024 25.6 3.1 49 564-612 2-56 (71)
No 1
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=100.00 E-value=2e-130 Score=1102.05 Aligned_cols=446 Identities=46% Similarity=0.750 Sum_probs=414.1
Q ss_pred CCChHHHHHhhhhhhcCCChhhHHHHHHHHHHHHHhhcCCccccCCccchhHHHHHHHHHhcCCCHHHHHHHhhcccccc
Q 006686 124 EDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVED 203 (635)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa~l~~D~~tI~AALLHDvvED 203 (635)
.++.+++.+.+. .+.++.+.. +.+|+.||.++|.||+|+||+|||.||++||.||+++++|.++++||||||++||
T Consensus 6 ~~~~~~~~~~~~---~~~~~~~~~-l~kA~~~A~q~H~~q~r~SGePYi~Hpl~Va~iLael~~d~~tl~AaLLHD~vED 81 (701)
T COG0317 6 CVELEELLDSLA---TYLPPVDIE-LKKAWYYARQAHGGQTRKSGEPYISHPLEVAEILAELHMDMETLAAALLHDTIED 81 (701)
T ss_pred cccHHHHHHHHH---hcCChHHHH-HHHHHHHHHHHhHhhcCcCCCchhhCHHHHHHHHHHccCCHHHHHHHHccchHhc
Confidence 344444555443 556566666 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHhChHHHHHHHhhhccccccccccccCCchhhhhhHHHHHHHHHhccCCceEEeeehhhhHhhhhhccC
Q 006686 204 TNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSH 283 (635)
Q Consensus 204 T~~~T~e~I~~~FG~~Va~LV~gvTkv~~l~~~~~~~~~~~~~~~qae~lRkmLlam~~DiRvvLVKLADRLhNmRtL~~ 283 (635)
|+ +|.++|++.||++|+.||+||||+++++++.. ....|+|++|+|++||++|+||++||||||||||||+..
T Consensus 82 t~-~t~e~i~~~FG~eVa~LV~GvTkl~~i~~~~~------~~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~~ 154 (701)
T COG0317 82 TP-VTEELIEEIFGKEVAKLVEGVTKLKKIGQLSS------EEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKN 154 (701)
T ss_pred CC-CCHHHHHHHHCHHHHHHHhhHHHhhhhhccCc------cchhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCcc
Confidence 98 89999999999999999999999998864322 234589999999999999999999999999999999999
Q ss_pred CCCcchhhHHHHHHHHHHHHHhhhcHHHHHHHHhcccccccChhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 006686 284 MPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQF 363 (635)
Q Consensus 284 ~~~~kq~~iA~ETl~iyaPLA~rLGi~~ik~ELEDLaf~~l~P~~Y~~i~~~l~~~r~~~e~~l~~~~~~L~~~L~~~~~ 363 (635)
++++||+++|+||++|||||||||||+++|||||||||+|++|++|..|++.|.+.|.+++.++++++..|++.|.+++
T Consensus 155 ~~~ek~~riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~P~~Y~~I~~~l~e~r~~re~~i~~~~~~l~~~L~~~g- 233 (701)
T COG0317 155 LDEEKRRRIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAG- 233 (701)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred cccccceeEEEEEecChHHHHHHHHhcCCCcccccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhcccccccccc
Q 006686 364 LDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAM 443 (635)
Q Consensus 364 l~~~~i~~~V~~R~K~~~SI~~Km~rk~~~~~~I~Di~giRIIv~~~~~~~~~~~~~~~~dcY~vlg~vh~~~~p~~~~~ 443 (635)
+.++|.||+||+||||+||++|+..|++|+|++||||||++. .|||++||+||.+|+|+|++|
T Consensus 234 -----i~a~v~gR~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~~------------~dCY~~LGiVH~~~kp~PgrF 296 (701)
T COG0317 234 -----IKAEVSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDTI------------PDCYTALGIVHTLWKPIPGEF 296 (701)
T ss_pred -----CeEEEEcCCCcccHHHHHHHHcccChhhhhhheeEEEEECCh------------HHHHHHHHHHHhcCcCCCCcc
Confidence 789999999999999999999999999999999999999864 699999999999999999999
Q ss_pred cccccCCCCCCCcceEEEEeccCCCCceeEEEEEechhhHHHHHHHHHhhccCccccccccccCCCCCCCCCCcccccch
Q 006686 444 KDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNN 523 (635)
Q Consensus 444 kDYIa~PK~nGYqSLHt~V~~~~~~~~~~vEIQIRT~~Mh~wAE~G~aah~~yK~~~~g~~~~~~~~~~~~~~~~~~~~~ 523 (635)
|||||+||+||||||||||++++ |.++||||||..||..||+|+||||+||++.
T Consensus 297 KDYIA~PK~NgYQSlHTtv~gp~---g~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~----------------------- 350 (701)
T COG0317 297 DDYIANPKPNGYQSLHTTVIGPE---GKPVEVQIRTKEMHEIAELGVAAHWRYKEGG----------------------- 350 (701)
T ss_pred ccccccCCCCCCceeEEEEECCC---CceEEEEEecHHHHHHHhhhHHHHhHhhcCC-----------------------
Confidence 99999999999999999998643 4699999999999999999999999999841
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCChhhhHhhhhhhhccCCceeeCCCCceeecCCCCcHHHHHHHhchhhhcceEEEEE
Q 006686 524 ANIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKV 603 (635)
Q Consensus 524 ~~~~~~~~wl~~l~~~~~~~~~~~~~~ef~~~i~~dL~~~~v~V~tPdG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkV 603 (635)
...+..++||++|++||++. .++.||++.+|.|||.++||||||+|++++||.|+||+||||+|||++|++|+||||
T Consensus 351 ~~~~~~~~Wlr~lle~q~~~---~d~~ef~e~~k~dlf~d~VyvfTPkG~vi~LP~GatplDFAY~vHt~iG~~c~gAkV 427 (701)
T COG0317 351 SAYEEKIAWLRQLLEWQEES---ADSGEFLEQLKSDLFPDRVYVFTPKGKVIDLPKGATPLDFAYAVHTDIGHRCIGAKV 427 (701)
T ss_pred chhhHHHHHHHHHHHHHHhc---CCcHHHHHHHhhcccCceEEEECCCCCEEeCCCCCcchhhhhhhhchhcceeeEEEE
Confidence 01235789999999999996 246899999999999999999999999999999999999999999999999999999
Q ss_pred CCEecCCCccCCCCCEEEEEecCC
Q 006686 604 NGNLVSPTHVLANAEVVEIITYNV 627 (635)
Q Consensus 604 NG~~vdL~~~L~~gd~VEIiT~~d 627 (635)
||+++||+++|++||+|||||.++
T Consensus 428 nG~ivpl~~~Lk~Gd~VEIit~k~ 451 (701)
T COG0317 428 NGRIVPLTTKLQTGDQVEIITSKH 451 (701)
T ss_pred CCEEeccceecCCCCEEEEEeCCC
Confidence 999999999999999999999887
No 2
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=100.00 E-value=1.8e-126 Score=1085.12 Aligned_cols=456 Identities=31% Similarity=0.543 Sum_probs=414.2
Q ss_pred CCChHHHHHhhhhhhcCCChhhHHHHHHHHHHHHHhhcCCccccCCccchhHHHHHHHHHhcCCCHHHHHHHhhcccccc
Q 006686 124 EDSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVED 203 (635)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa~l~~D~~tI~AALLHDvvED 203 (635)
++..+.+.+.+ ..|+ +.+.+.+.+|+.||.++|.| |+||+|||+||++||.||++++||.++|+||||||+|||
T Consensus 14 ~~~~~~l~~~~---~~~~-~~~~~~i~~A~~~a~~~H~g--r~sGepyi~Hpl~vA~iLa~~~~D~~ti~AaLLHD~ved 87 (743)
T PRK10872 14 EFDPDKWIASL---GITS-QQSCERLAETWAYCLQQTQG--HPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADA 87 (743)
T ss_pred chhHHHHHHHH---Hhhh-HHHHHHHHHHHHHHHHhccC--CCCCChhhhhHHHHHHHHHHcCCCHHHHHHHHhhhhHhc
Confidence 34444444433 3577 88999999999999999999 999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHhChHHHHHHHhhhccccccccccccCCchhhhhhHHHHHHHHHhccCCceEEeeehhhhHhhhhhccC
Q 006686 204 TNVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSH 283 (635)
Q Consensus 204 T~~~T~e~I~~~FG~~Va~LV~gvTkv~~l~~~~~~~~~~~~~~~qae~lRkmLlam~~DiRvvLVKLADRLhNmRtL~~ 283 (635)
|+ +|.++|++.||++|+.||+||||++++....... ..+.+..|+|+||||||||++|+||+||||||||||||||..
T Consensus 88 t~-~t~e~i~~~FG~~Va~lVdgvtKl~~i~~~~~~~-~~~~~~~qae~~RKmllam~~DiRVilIKLADRLhnmrTl~~ 165 (743)
T PRK10872 88 NV-VSEDVLRESVGKSIVNLIHGVRDMDAIRQLKATH-NDSVSSEQVDNVRRMLLAMVEDFRCVVIKLAERIAHLREVKD 165 (743)
T ss_pred CC-CCHHHHHHHHCHHHHHHHHHHHHHHHhhhhhccc-ccchhHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHhhc
Confidence 98 8999999999999999999999998864311110 012345699999999999999999999999999999999999
Q ss_pred CCCcchhhHHHHHHHHHHHHHhhhcHHHHHHHHhcccccccChhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhc
Q 006686 284 MPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQF 363 (635)
Q Consensus 284 ~~~~kq~~iA~ETl~iyaPLA~rLGi~~ik~ELEDLaf~~l~P~~Y~~i~~~l~~~r~~~e~~l~~~~~~L~~~L~~~~~ 363 (635)
+|++||++||+||++||||||||||||+||||||||||+||+|++|+.|++.|.+.+.+++.+++.+++.|++.|.+.
T Consensus 166 ~~~~kq~~iA~ETl~IyAPlA~RLGi~~iK~ELEDL~f~~l~P~~Y~~i~~~l~~~~~~r~~~i~~~~~~l~~~L~~~-- 243 (743)
T PRK10872 166 APEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPDEYKRIAKLLHERRIDREHYIEEFVGHLRAEMKAE-- 243 (743)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cccccceeEEEEEecChHHHHHHHHhcCCCcccccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhcccccccccc
Q 006686 364 LDLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAM 443 (635)
Q Consensus 364 l~~~~i~~~V~~R~K~~~SI~~Km~rk~~~~~~I~Di~giRIIv~~~~~~~~~~~~~~~~dcY~vlg~vh~~~~p~~~~~ 443 (635)
+++++|.||+|++||||+||++++.+|++|+|++|+||||++ ..|||++||+||++|+|+|++|
T Consensus 244 ----~i~~~v~gR~K~~ySI~~Km~~k~~~~~~i~Di~a~RIIv~~------------~~dCY~vLg~ih~~~~pip~~f 307 (743)
T PRK10872 244 ----GVKAEVYGRPKHIYSIWRKMQKKSLAFDELFDVRAVRIVAER------------LQDCYAALGIVHTHYRHLPDEF 307 (743)
T ss_pred ----CCceEEEeecCCHHHHHHHHHHcCCCHHHhccceeEEEEECC------------HHHHHHHHHHHHhhccCCcchh
Confidence 478999999999999999999999999999999999999975 5799999999999999999999
Q ss_pred cccccCCCCCCCcceEEEEeccCCCCceeEEEEEechhhHHHHHHHHHhhccCccccccccccCCCCCCCCCCcccccch
Q 006686 444 KDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNN 523 (635)
Q Consensus 444 kDYIa~PK~nGYqSLHt~V~~~~~~~~~~vEIQIRT~~Mh~wAE~G~aah~~yK~~~~g~~~~~~~~~~~~~~~~~~~~~ 523 (635)
||||++||+||||||||+|+++ .+.++||||||..||.+||+|+||||+||++.. . ++. .
T Consensus 308 kDYIa~PK~NGYqSLHttv~~~---~g~~vEVQIRT~~Mh~~AE~GvAAHW~YKeg~~-----------~--~~~----~ 367 (743)
T PRK10872 308 DDYVANPKPNGYQSIHTVVLGP---GGKTVEIQIRTRQMHEDAELGVAAHWKYKEGAA-----------A--GGG----R 367 (743)
T ss_pred hhcccCCCCCCcceeEEEEECC---CCcEEEEEEEcHHHHHHHhhhHHHHHhccCCCC-----------c--ccc----c
Confidence 9999999999999999999853 357999999999999999999999999997421 0 000 1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCChhhhHhhhhhhhccCCceeeCCCCceeecCCCCcHHHHHHHhchhhhcceEEEEE
Q 006686 524 ANIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKV 603 (635)
Q Consensus 524 ~~~~~~~~wl~~l~~~~~~~~~~~~~~ef~~~i~~dL~~~~v~V~tPdG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkV 603 (635)
..++.+++||++|++||++. .++.||++.+|.|||+++||||||+|+++.||.|+|++||||+|||++|++|+||+|
T Consensus 368 ~~~~~~~~wLr~lle~~~~~---~d~~ef~e~~k~dl~~d~V~VfTPkG~~~~Lp~gaT~lDfAy~iHt~iG~~~~gAkv 444 (743)
T PRK10872 368 SGHEDRIAWLRKLIAWQEEM---ADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKI 444 (743)
T ss_pred cchHHHHHHHHHHHHHHhcc---CCHHHHHHHHHHHhcCCeEEEECCCCCeEEcCCCCcHHHHHHHHhHHHHhhceEEEE
Confidence 12345789999999999984 367899999999999999999999999999999999999999999999999999999
Q ss_pred CCEecCCCccCCCCCEEEEEecCCc
Q 006686 604 NGNLVSPTHVLANAEVVEIITYNVS 628 (635)
Q Consensus 604 NG~~vdL~~~L~~gd~VEIiT~~d~ 628 (635)
||+.|+|+++|++||+|||+|.+..
T Consensus 445 ng~~v~l~~~L~~GD~VeIits~~~ 469 (743)
T PRK10872 445 GGRIVPFTYQLQMGDQIEIITQKQP 469 (743)
T ss_pred CCEECCCCcCCCCCCEEEEEeCCCC
Confidence 9999999999999999999998764
No 3
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=100.00 E-value=9.2e-124 Score=1065.39 Aligned_cols=440 Identities=39% Similarity=0.665 Sum_probs=409.9
Q ss_pred hcCCChhhHHHHHHHHHHHHHhhcCCccccCCccchhHHHHHHHHHhcCCCHHHHHHHhhccccccCCCCCHHHHHHHhC
Q 006686 138 ISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFG 217 (635)
Q Consensus 138 ~~~~~~~~~~~v~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa~l~~D~~tI~AALLHDvvEDT~~~T~e~I~~~FG 217 (635)
..|+++.+.+++.+|+.||.++|.||+|++|+||+.||++||.||+++++|.++|+||||||++|||+ +|.++|++.||
T Consensus 12 ~~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~ti~AaLLHDvvEDt~-~t~e~i~~~FG 90 (702)
T PRK11092 12 QTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPVAVACILAEMRLDYETLMAALLHDVIEDTP-ATYQDMEQLFG 90 (702)
T ss_pred HhhCCHHHHHHHHHHHHHHHHhccCCcCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHhcccchhhhCC-CCHHHHHHHHC
Confidence 46899999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred hHHHHHHHhhhccccccccccccCCchhhhhhHHHHHHHHHhccCCceEEeeehhhhHhhhhhccCCCCcchhhHHHHHH
Q 006686 218 ATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETL 297 (635)
Q Consensus 218 ~~Va~LV~gvTkv~~l~~~~~~~~~~~~~~~qae~lRkmLlam~~DiRvvLVKLADRLhNmRtL~~~~~~kq~~iA~ETl 297 (635)
++|+.+|+||||++++.. .. ....|+|++||||++|++|+||++|||||||||||||..+|+++|++||+||+
T Consensus 91 ~~Va~lV~gvTk~~~l~~---~~----~~~~q~e~~rkmllam~~DiRVvlIKLADRlhNmrtL~~~~~ek~~~iA~ETl 163 (702)
T PRK11092 91 KSVAELVEGVSKLDKLKF---RD----KKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIARETL 163 (702)
T ss_pred HHHHHHHHHHHhhccccc---cc----hhhHHHHHHHHHHHHhcCCCceEEEEHHHHHhhHHHHHhcCccHHHHHHHHHH
Confidence 999999999999877642 11 23458999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcHHHHHHHHhcccccccChhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhccccccceeEEEEEe
Q 006686 298 QVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVC 377 (635)
Q Consensus 298 ~iyaPLA~rLGi~~ik~ELEDLaf~~l~P~~Y~~i~~~l~~~r~~~e~~l~~~~~~L~~~L~~~~~l~~~~i~~~V~~R~ 377 (635)
+||||||+||||++||||||||||+||+|++|+.|++.|.+.+.+++++++.+...|++.|.+. +++++|.||.
T Consensus 164 ~iyaPlA~rlGi~~ik~eLedL~f~~l~P~~y~~i~~~~~~~~~~r~~~i~~~~~~l~~~l~~~------~i~~~i~~R~ 237 (702)
T PRK11092 164 EIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILSEIEGRLQEA------GIPCRVSGRE 237 (702)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCcEEEEecc
Confidence 9999999999999999999999999999999999999999999999999999999999998876 4789999999
Q ss_pred cChHHHHHHHHhcCCCcccccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhcccccccccccccccCCCCCCCcc
Q 006686 378 KEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQS 457 (635)
Q Consensus 378 K~~~SI~~Km~rk~~~~~~I~Di~giRIIv~~~~~~~~~~~~~~~~dcY~vlg~vh~~~~p~~~~~kDYIa~PK~nGYqS 457 (635)
|++||||+||++|+.+|++|+|++|+||||++ ..|||++||+||++|+|+|++|||||+.||+|||||
T Consensus 238 K~~ySI~~Km~~k~~~~~~i~Di~a~Riiv~~------------~~dCY~~lg~ih~~~~pip~~~kDyIa~PK~NgYqS 305 (702)
T PRK11092 238 KHLYSIYCKMVLKEQRFHSIMDIYAFRVIVDD------------SDTCYRVLGQMHSLYKPRPGRVKDYIAIPKANGYQS 305 (702)
T ss_pred CCHHHHHHHHHHcCCChhHhccceeEEEEECC------------HHHHHHHHHHHHhcCCCCcCccccccCCCCCCCCce
Confidence 99999999999999999999999999999875 479999999999999999999999999999999999
Q ss_pred eEEEEeccCCCCceeEEEEEechhhHHHHHHHHHhhccCccccccccccCCCCCCCCCCcccccchhhHHHHHHHHHHHH
Q 006686 458 LHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIR 537 (635)
Q Consensus 458 LHt~V~~~~~~~~~~vEIQIRT~~Mh~wAE~G~aah~~yK~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~l~ 537 (635)
|||+|+++ .+.++||||||..||.+||+|+||||+||++.. . + .......++||++|+
T Consensus 306 LHt~v~g~---~g~~vEvQIRT~~Mh~~Ae~GvaAhW~yK~~~~-----------~--~------~~~~~~~~~wlr~ll 363 (702)
T PRK11092 306 LHTSMIGP---HGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGE-----------T--G------TTAQIRAQRWMQSLL 363 (702)
T ss_pred EEEEEECC---CCcEEEEEEEcHHHHHHHhhhhHhhhhhccCCC-----------c--c------chhHHHHHHHHHHHH
Confidence 99999753 347999999999999999999999999997420 0 0 011123489999999
Q ss_pred HHHHhhhcCCChhhhHhhhhhhhccCCceeeCCCCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCCCccCCCC
Q 006686 538 EWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANA 617 (635)
Q Consensus 538 ~~~~~~~~~~~~~ef~~~i~~dL~~~~v~V~tPdG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL~~~L~~g 617 (635)
+||++. .++.||++.++.|||+++||||||+|++++||.|+||+||||+|||++|++|+||||||++|||+++|++|
T Consensus 364 ~~~~~~---~~~~ef~~~~~~dl~~d~v~VfTP~G~v~~LP~GaT~lDFAY~iHt~iG~~c~gAkVNg~~vpL~~~L~~G 440 (702)
T PRK11092 364 ELQQSA---GSSFEFIESVKSDLFPDEIYVFTPEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSG 440 (702)
T ss_pred HHHhhc---CChHHHHHHHHhhhccceEEEECCCCCEEeCCCCCchhhhhHhhCchhhceeEEEEECCEECCCCccCCCC
Confidence 999974 36789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEecCCc
Q 006686 618 EVVEIITYNVS 628 (635)
Q Consensus 618 d~VEIiT~~d~ 628 (635)
|+|||+|.+..
T Consensus 441 d~VeIiT~~~~ 451 (702)
T PRK11092 441 QTVEIITAPGA 451 (702)
T ss_pred CEEEEEeCCCC
Confidence 99999998754
No 4
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=100.00 E-value=1.4e-116 Score=1008.49 Aligned_cols=425 Identities=48% Similarity=0.777 Sum_probs=397.2
Q ss_pred HHHHHHHhhcCCccccCCccchhHHHHHHHHHhcCCCHHHHHHHhhccccccCCCCCHHHHHHHhChHHHHHHHhhhccc
Q 006686 152 ALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVS 231 (635)
Q Consensus 152 A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa~l~~D~~tI~AALLHDvvEDT~~~T~e~I~~~FG~~Va~LV~gvTkv~ 231 (635)
|+.||.++|.||+|++|+||+.||++||.+|+++++|.++++||||||++|||+ +|.++|++.||++|+.+|++|||++
T Consensus 1 A~~~A~~aH~gQ~rksg~PYi~Hpl~VA~iL~~~~~D~~~i~AaLLHDvvEDt~-~t~e~i~~~FG~~Va~lV~~vTk~~ 79 (683)
T TIGR00691 1 ALEIAKDLHEGQKRKSGEPYIIHPLAVALILAELGMDEETVCAALLHDVIEDTP-VTEEEIEEEFGEEVAELVDGVTKIT 79 (683)
T ss_pred CHHHHHHhcccCcCCCCCcHHHHHHHHHHHHHHhCCCHHHHHHHhccchHhcCC-CCHHHHHHHHCHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999999999999999999998 8999999999999999999999988
Q ss_pred cccccccccCCchhhhhhHHHHHHHHHhccCCceEEeeehhhhHhhhhhccCCCCcchhhHHHHHHHHHHHHHhhhcHHH
Q 006686 232 KLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQ 311 (635)
Q Consensus 232 ~l~~~~~~~~~~~~~~~qae~lRkmLlam~~DiRvvLVKLADRLhNmRtL~~~~~~kq~~iA~ETl~iyaPLA~rLGi~~ 311 (635)
.+... .....|++++|+||++|+.|+||++|||||||||||+|..+|+++|+++|+||++||||||+||||++
T Consensus 80 ~~~~~-------~~~~~q~e~~rkmlla~~~d~rvvlVKLADrlhNmrtl~~~~~~k~~~iA~Et~~iyaPlA~rLG~~~ 152 (683)
T TIGR00691 80 KLKKK-------SRQELQAENFRKMILAMAQDIRVIVIKLADRLHNMRTLDFLPPEKQKRIAKETLEIYAPLAHRLGMSS 152 (683)
T ss_pred ccccc-------hhhHHHHHHHHHHHHhhcCCcceEeeeHHHHHhHHHHHHhhChHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 76421 12345889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccccChhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhccccccceeEEEEEecChHHHHHHHHhcC
Q 006686 312 IKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVCKEPYSIYKAVLKSR 391 (635)
Q Consensus 312 ik~ELEDLaf~~l~P~~Y~~i~~~l~~~r~~~e~~l~~~~~~L~~~L~~~~~l~~~~i~~~V~~R~K~~~SI~~Km~rk~ 391 (635)
||||||||||+||+|++|+.|++.|.+.+.+++.+++.+...|++.|.+.+ ++++|+||+|++||||+||++++
T Consensus 153 ik~eLedl~f~~l~p~~y~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~------i~~~i~~R~K~~~Si~~Km~~k~ 226 (683)
T TIGR00691 153 IKTELEDLSFKYLYPKEYENIKSLVNEQKVNRENKLEKFKSELEKRLEDSG------IEAELEGRSKHLYSIYQKMTRKG 226 (683)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CceEEEeeeCCHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999998764 68899999999999999999999
Q ss_pred CCcccccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhcccccccccccccccCCCCCCCcceEEEEeccCCCCce
Q 006686 392 GSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMF 471 (635)
Q Consensus 392 ~~~~~I~Di~giRIIv~~~~~~~~~~~~~~~~dcY~vlg~vh~~~~p~~~~~kDYIa~PK~nGYqSLHt~V~~~~~~~~~ 471 (635)
.+|++|+|++|+||||++ ..|||++||+||+.|+|+|++|||||+.||+||||||||+|.++ .+.
T Consensus 227 ~~~~~i~Di~~~RIi~~~------------~~dcy~vlg~ih~~~~p~~~~~kDyIa~PK~nGYqSlHt~v~~~---~g~ 291 (683)
T TIGR00691 227 QNFDEIHDLLAIRIIVKS------------ELDCYRVLGIIHLLFKPIPGRFKDYIASPKENGYQSLHTTVRGP---KGL 291 (683)
T ss_pred CCHHHcccceeEEEEECC------------HHHHHHHHHHHHhcCCCCcccccccccCCCCCCcceeEEEEEcC---CCC
Confidence 999999999999999875 57999999999999999999999999999999999999999753 358
Q ss_pred eEEEEEechhhHHHHHHHHHhhccCccccccccccCCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHhhhcCCChhh
Q 006686 472 RLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREWQEEFVGNMTSRE 551 (635)
Q Consensus 472 ~vEIQIRT~~Mh~wAE~G~aah~~yK~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~l~~~~~~~~~~~~~~e 551 (635)
++||||||..||.|||+|+|+||+||++.. + ....+.+++||++|++||++. .++.+
T Consensus 292 ~~EvQIRT~~mh~~Ae~Gvaahw~yk~~~~--------------~------~~~~~~~~~wl~~~~~~~~~~---~~~~~ 348 (683)
T TIGR00691 292 PVEIQIRTEDMDRVAEYGIAAHWIYKEGNP--------------Q------KEALIDDMRWLNYLVEWQQES---ANFFE 348 (683)
T ss_pred EEEEEEEehHHHHHHHHHHHHHHhhcCCCC--------------c------chhHHHHHHHHHHHHHHHhhc---ccchh
Confidence 999999999999999999999999997320 0 011235789999999999984 35789
Q ss_pred hHhhhhhhhccCCceeeCCCCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCCCccCCCCCEEEEEecCCc
Q 006686 552 FVDTITRDLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNVS 628 (635)
Q Consensus 552 f~~~i~~dL~~~~v~V~tPdG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL~~~L~~gd~VEIiT~~d~ 628 (635)
|++.+|.|||+++||||||+|+++.||.|+|++||||+||+++|++|++|+|||+.|+|+++|++||+|||+|.+..
T Consensus 349 ~~~~~k~~l~~~~i~vfTPkG~~~~lp~gst~~DfAy~ih~~~g~~~~~a~vng~~v~l~~~l~~gd~vei~t~~~~ 425 (683)
T TIGR00691 349 FIENLKSDLFNEEIYVFTPKGDVVELPSGSTPVDFAYAVHTDVGNKCTGAKVNGKIVPLDKELENGDVVEIITGKNS 425 (683)
T ss_pred HHHHhhHHhccCceEEECCCCeEEEcCCCCCHHHHHHHHhHHhHhceeEEEECCEECCCCccCCCCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998764
No 5
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-79 Score=637.15 Aligned_cols=435 Identities=33% Similarity=0.470 Sum_probs=364.9
Q ss_pred CChhhHHHHHHHHHHHHHhhcCCccccC-CccchhHHHHHHHHHhcCCCHHHHHHHhhccccccCCCCCHHHHHHHhChH
Q 006686 141 LSPNELELVRRALMLAFEAHDGQKRRSG-EPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGAT 219 (635)
Q Consensus 141 ~~~~~~~~v~~A~~~A~~aH~gQ~RksG-ePYi~Hpl~VA~iLa~l~~D~~tI~AALLHDvvEDT~~~T~e~I~~~FG~~ 219 (635)
+.-.+..++-+|+.+|+.+|++|+|+++ +||+.||+.+|.||+++++|.++++||+||||||||. +++++|++.||++
T Consensus 69 ~~t~~s~lv~KAl~~Aa~~HR~Q~Rad~~rPY~nH~i~ta~iLAd~~~ds~Vv~AaiLHDVVDDt~-~S~eeI~~~FG~g 147 (543)
T KOG1157|consen 69 HKTFSSELVIKALYEAAKAHRGQMRADDDRPYLNHCIETAMILADIGADSTVVVAAILHDVVDDTF-MSYEEILRHFGTG 147 (543)
T ss_pred hhcCcHHHHHHHHHHHHHHHhcccccCCCCchhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhhcc-CCHHHHHHHhCcc
Confidence 3344678899999999999999999965 5999999999999999999999999999999999998 8999999999999
Q ss_pred HHHHHHhhhccccccccccccCCchhhhhhHHHHHHHHHhccCCceEEeeehhhhHhhhhhccCCCCcchhhHHHHHHHH
Q 006686 220 VRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQV 299 (635)
Q Consensus 220 Va~LV~gvTkv~~l~~~~~~~~~~~~~~~qae~lRkmLlam~~DiRvvLVKLADRLhNmRtL~~~~~~kq~~iA~ETl~i 299 (635)
|++||+++|+++.+.+..+++ ..+.++++ |+.+++ +.|++||||||+|||||+|.++||-+|++.++||+.|
T Consensus 148 Va~LV~EvtddKnL~K~eRk~------l~qiet~~-~fyak~-s~RAvLIkLADKLdNMRdL~~lpPvgwq~~r~e~lfI 219 (543)
T KOG1157|consen 148 VADLVEEVTDDKNLSKLERKN------LTQIETVE-MFYAKA-SARAVLIKLADKLDNMRDLYALPPVGWQRFRKETLFI 219 (543)
T ss_pred HHHHHHHHhcccchhHHHHHH------HHHHHHHH-HHHHHH-HHHHHHHHHHHHHhhhhhhhccCcchhHHHHHHHHHH
Confidence 999999999999888654432 24677787 666776 4999999999999999999999999999999999999
Q ss_pred HHHHHhhhcHHHHHHHHhcccccccChhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhccccccceeEEEEEecC
Q 006686 300 FAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVCKE 379 (635)
Q Consensus 300 yaPLA~rLGi~~ik~ELEDLaf~~l~P~~Y~~i~~~l~~~r~~~e~~l~~~~~~L~~~L~~~~~l~~~~i~~~V~~R~K~ 379 (635)
|+|||+++|++..+.+||||+|+|++|..|.++..+|+.... +..|...+..|++.|...++ ..+-|.||.|+
T Consensus 220 wapla~~~g~gtn~~lle~Ldf~~l~p~~~~~m~s~l~~~~~--~~mi~~~~~~l~~~l~~a~i-----~~~~i~gr~ks 292 (543)
T KOG1157|consen 220 WAPLANRLGIGTNKVLLENLDFKHLFPCQHIEMSSMLEDSFD--EAMITSAIEKLEQALKKAGI-----SYHVIKGRHKS 292 (543)
T ss_pred hhHHHHHhcccchHHHHhhhhHHHhCchhHHHHHHHHhcccc--hHHHHHHHHHHHHHHHhccc-----eeEEEecchhh
Confidence 999999999999999999999999999999999999998654 77888888889998887653 24689999999
Q ss_pred hHHHHHHHHhcCCCcccccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhcccccccccccccccCCCCCCCcceE
Q 006686 380 PYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLH 459 (635)
Q Consensus 380 ~~SI~~Km~rk~~~~~~I~Di~giRIIv~~~~~~~~~~~~~~~~dcY~vlg~vh~~~~p~~~~~kDYIa~PK~nGYqSLH 459 (635)
.||||+||.|++...++|+||.|+|+||++. .|||+++|+||++|+.+|++.||||+.||.|||||||
T Consensus 293 ~ysi~~kmlk~~~~~dei~di~glr~i~~~~------------~~cyk~~~vv~slw~evp~k~kdyia~pk~ngy~slh 360 (543)
T KOG1157|consen 293 LYSIYKKMLKKKLTPDEIHDIHGLRLIVDNE------------SDCYKALGVVHSLWSEVPGKLKDYIAHPKFNGYQSLH 360 (543)
T ss_pred HHHHHHHHHhcCCCHHHhhhhcceEEEEcCc------------hHHHHHHHHHHHHHHhCcchhhhhhcCccccccceee
Confidence 9999999999999999999999999999975 5999999999999999999999999999999999999
Q ss_pred EEEeccCCCCceeEEEEEechhhHHHHHHHHHhhccCccccccccccCCCCCCCCCCcccccchhhHHHHHHHHHHHHHH
Q 006686 460 TTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNANIALRISWLNAIREW 539 (635)
Q Consensus 460 t~V~~~~~~~~~~vEIQIRT~~Mh~wAE~G~aah~~yK~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~l~~~ 539 (635)
|+|...+ .+|+||||||..||.-||+|.|+||.||++. + +....+++.|.+....|
T Consensus 361 ~~v~~d~---~~plevqirt~em~~~a~~g~aah~~yk~g~-----------------~----~~~~~q~~~~~~~~~~~ 416 (543)
T KOG1157|consen 361 TVVMVDG---TRPLEVQIRTMEMHLQAEFGFAAHWRYKEGK-----------------T----SSFVLQMVEWARWVVTW 416 (543)
T ss_pred eEEecCC---cceeEEEEeeeccccccccchhhHhhhhcCC-----------------C----CHHHHHHHHHHHHHHHH
Confidence 9996533 4789999999999999999999999999831 1 23345789999999999
Q ss_pred HHhhhc-CCChhhhHhhhhh-hhccCCceeeCCCC----------------ceeecCCCCcHHHHHHHhchhhhc-----
Q 006686 540 QEEFVG-NMTSREFVDTITR-DLLGSRVFVFTPRG----------------EIKNLPKGATVVDYAYMIHTEIGN----- 596 (635)
Q Consensus 540 ~~~~~~-~~~~~ef~~~i~~-dL~~~~v~V~tPdG----------------~~~~lp~GaT~lD~A~~Ih~~lg~----- 596 (635)
.-+... +.++- --...|. .--+|.++.+.|++ .+-++|+.+|+.|....-+++-..
T Consensus 417 ~~~~~~kd~ss~-~~~~~k~~s~~~d~~f~~~~~~~~~~~~~~~~ie~e~m~~~~~~e~~~~~d~~s~~~~~s~~~~~~~ 495 (543)
T KOG1157|consen 417 HAEIMSKDISSI-KSSSCKFPSHQEDCPFSYKPKNGQGGPVYVIVIENEKMGVQEFPEMSTVSDLLSRAGPGSSRWSMYQ 495 (543)
T ss_pred HHHHHhcccccc-cccccCCCCccccCceeecCCCCCCCceEEEEeeccccCCCCCchhhhHHHhhccCCCCccchhhhc
Confidence 877531 11111 0011121 11246778888764 245688899999986554332111
Q ss_pred ---ceEEEEECCEecCCCccCCCCCEEEEEecCCcccc
Q 006686 597 ---KMVAAKVNGNLVSPTHVLANAEVVEIITYNVSFSL 631 (635)
Q Consensus 597 ---~~v~AkVNG~~vdL~~~L~~gd~VEIiT~~d~Egl 631 (635)
....-+.|. |+.+.+.-||+|+.....+.+||
T Consensus 496 ~~~e~lr~~~~~---d~~~k~~m~d~~~~~p~~~~~~l 530 (543)
T KOG1157|consen 496 IPAEELRPRLNQ---DLKYKLKMGDVVELTPHIPDTSL 530 (543)
T ss_pred CcHHHhhhhhcc---chhHHhhhcchhhcCCCCCChhH
Confidence 112223343 88899999999999887777776
No 6
>PF13328 HD_4: HD domain; PDB: 3NR1_B.
Probab=100.00 E-value=1.2e-39 Score=310.31 Aligned_cols=153 Identities=55% Similarity=0.843 Sum_probs=98.0
Q ss_pred HHHHHHHhhcCCccccCCccchhHHHHHHHHHhcCCCHHHHHHHhhccccccCCCCCHHHHHHHhChHHHHHHHhhhccc
Q 006686 152 ALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDTNVVTFERIEEEFGATVRRIVEGETKVS 231 (635)
Q Consensus 152 A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa~l~~D~~tI~AALLHDvvEDT~~~T~e~I~~~FG~~Va~LV~gvTkv~ 231 (635)
|+.||.++|.||++++|+||+.||++||.+|.++|+|+++++||||||++|||. .+ ++|++.||++|+++|.++|+++
T Consensus 1 A~~~A~~~h~~~~~~~g~py~~H~~~va~~l~~~~~d~~~i~aalLHD~ied~~-~~-~~i~~~fg~~V~~lV~~lt~~~ 78 (153)
T PF13328_consen 1 ALAFAAEAHAGQRRKSGEPYISHPLEVAEILAELGLDEETIAAALLHDVIEDTE-TT-EDIEERFGEDVADLVDALTKIK 78 (153)
T ss_dssp HHHHHHHHTTT-B-ST--BTTHHHHHHHHHHHTS---HHHHHHHHHTTHHHHSS----HHHHHHHHHHHHHHHHHT---T
T ss_pred CHHHHHHHHhcccCCCCCcHHHHHHHHHHHHHHcCCCHHHHhhheeecHHHhcC-CH-HHHHHccChHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999999999999999999999995 56 9999999999999999999988
Q ss_pred cccccccccCCchhhhhhHHHHHHHHHhccCCceEEeeehhhhHhhhhhccCCCCcchhhHHHHHHHHHHHHHhhhcHH
Q 006686 232 KLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMY 310 (635)
Q Consensus 232 ~l~~~~~~~~~~~~~~~qae~lRkmLlam~~DiRvvLVKLADRLhNmRtL~~~~~~kq~~iA~ETl~iyaPLA~rLGi~ 310 (635)
.+++.. .......+.+++|+||+++++|+||++|||||||||||++...|+++++++|+||+++|+|||+|||||
T Consensus 79 ~~~~~~----~~~~~~~~~~~~r~ml~~~~~d~~~~lIKlaDrl~nl~~~~~~~~~~~~~~a~Et~~i~apLA~rLGiw 153 (153)
T PF13328_consen 79 KLSKKP----WEERSEEYAERLRRMLLAMSEDVRAVLIKLADRLHNLRTIKYLPPEKQRRYARETLDIYAPLAHRLGIW 153 (153)
T ss_dssp TS-HH-------HHHHHHHHHGGG-----S-H-HHHHHHHHHHHHHHHHHHH---TT----------------------
T ss_pred cccccc----chhhHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhccHHHCCHHHhhhhhhccccccccccccccCC
Confidence 776431 011345678999999999999999999999999999999999999999999999999999999999998
No 7
>PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat. RelA (2.7.6.5 from EC) produces pppGpp (or ppGpp) from ATP and GTP (or GDP). SpoT (3.1.7.2 from EC) degrades ppGpp, but may also act as a secondary ppGpp synthetase. The two proteins are strongly similar. In many species, a single homologue to SpoT and RelA appears reponsible for both ppGpp synthesis and ppGpp degradation. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. ; GO: 0015969 guanosine tetraphosphate metabolic process; PDB: 2BE3_B 1VJ7_B 3L9D_B.
Probab=99.94 E-value=2e-27 Score=215.04 Aligned_cols=110 Identities=33% Similarity=0.482 Sum_probs=91.0
Q ss_pred EEecChHHHHHHHHhcCC---CcccccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhcccccccccccccccCCC
Q 006686 375 SVCKEPYSIYKAVLKSRG---SINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPK 451 (635)
Q Consensus 375 ~R~K~~~SI~~Km~rk~~---~~~~I~Di~giRIIv~~~~~~~~~~~~~~~~dcY~vlg~vh~~~~p~~~~~kDYIa~PK 451 (635)
+|+|+++|+++|+.|++. .+.+|+|++|+|||++.. +|||.++++|+..|.+.+.+++|||+.|+
T Consensus 1 ~RvK~~~Sl~~Kl~r~~~~~~~~~~i~Dl~G~RIi~~~~------------~d~~~v~~~l~~~~~~~~~~~~d~i~~~~ 68 (115)
T PF04607_consen 1 SRVKSPESLIEKLRRKGGPDNPLKDIQDLVGIRIIVYFP------------DDCYKVLGLLHKLFDVKIDRSKDYIANPK 68 (115)
T ss_dssp EEE--HHHHHHCHHHHTGCCCCCCCTCCSEEEEEEESSC------------CHHHHHHHHHHTHSSCEEEEEEETTTT--
T ss_pred CCCCCHHHHHHHHHhHCCCcccHHHhccccEEEEEEeeH------------HHHHHHHHHHHHcCCcccccccccccccc
Confidence 699999999999999874 789999999999998754 69999999999999999999999999999
Q ss_pred CCCCcceEEEEeccCCCCceeEEEEEechhhHHHHHHHHHhhccC
Q 006686 452 PNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSG 496 (635)
Q Consensus 452 ~nGYqSLHt~V~~~~~~~~~~vEIQIRT~~Mh~wAE~G~aah~~y 496 (635)
.|||||+|++|.......+.++||||||.+||.|||..|...|+.
T Consensus 69 ~~GYrs~H~~v~~~~~~~~~~~EiQIrT~~~~~waei~h~~~YK~ 113 (115)
T PF04607_consen 69 SNGYRSLHYIVPENESFKGYPFEIQIRTLLQHAWAEIEHDLRYKS 113 (115)
T ss_dssp TTS--EEEEEEEETTECEEEEEEEEEEEHHHHHHHHHHHHHHHHC
T ss_pred cCCcEeeEeeeeecccCCCceeeeeeccHHHHHHHHHHHHHhCCC
Confidence 999999999993222345789999999999999999766555543
No 8
>cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases. This family includes the catalytic domains of Escherichia coli ppGpp synthetase (RelA), ppGpp synthetase/hydrolase (SpoT), and related proteins. RelA synthesizes (p)ppGpp in response to amino-acid starvation and in association with ribosomes. (p)ppGpp triggers the bacterial stringent response. SpoT catalyzes (p)ppGpp synthesis under carbon limitation in a ribosome-independent manner. It also catalyzes (p)ppGpp degradation. Gram-negative bacteria have two enzymes involved in (p)ppGpp metabolism while most Gram-positive organisms have a single Rel-Spo enzyme (Rel), which both synthesizes and degrades (p)ppGpp. The Arabidopsis thaliana Rel-Spo proteins, At-RSH1,-2, and-3 appear to regulate a rapid (p)ppGpp-mediated response to pathogens and other stresses. This catalytic domain is found in association with an N-terminal HD domain and a C-terminal metal dependent phosphohydro
Probab=99.94 E-value=7.6e-27 Score=215.93 Aligned_cols=107 Identities=36% Similarity=0.572 Sum_probs=96.6
Q ss_pred eeEEEEEecChHHHHHHHHhcCCCc---ccccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccccccccccc
Q 006686 370 KTEIRSVCKEPYSIYKAVLKSRGSI---NEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDY 446 (635)
Q Consensus 370 ~~~V~~R~K~~~SI~~Km~rk~~~~---~~I~Di~giRIIv~~~~~~~~~~~~~~~~dcY~vlg~vh~~~~p~~~~~kDY 446 (635)
.+.|.+|+|+++|+++|+.+++... ++|+|++|+|||++. .+|||.+++.|++.|++.|.+++||
T Consensus 20 ~~~v~~RvK~~~sl~~Kl~~~~~~~~~~~~i~Dl~g~Rii~~~------------~~d~~~v~~~l~~~f~~~~~~~~D~ 87 (129)
T cd05399 20 VASVSGRVKSPYSIYEKLRRKGKDLPILDEITDLVGVRVVLLF------------VDDCYRVLDLLHSLFKVIPGRVKDY 87 (129)
T ss_pred CcEEEEecCCHHHHHHHHHhhCCCCCcHHHhhhhheEEEEEeC------------HHHHHHHHHHHHhCCcccCccccCC
Confidence 6789999999999999999998776 999999999999764 5799999999999999999999999
Q ss_pred ccCCCCCCCcceEEEEeccCCCCceeEEEEEechhhHHHHHH
Q 006686 447 IATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAER 488 (635)
Q Consensus 447 Ia~PK~nGYqSLHt~V~~~~~~~~~~vEIQIRT~~Mh~wAE~ 488 (635)
|+.||+|||||+|+++.......+.++||||||..||+|||.
T Consensus 88 ~~~p~~~GYrslH~~~~~~~~~~~~~~EIQirT~~~~~wae~ 129 (129)
T cd05399 88 IAEPKENGYQSLHLVVRGPEDKAGVLIEIQIRTILMHAWAEL 129 (129)
T ss_pred cCCCCCCCceEEEEEEEcCCCcCCcEEEEEeCCHHHHHHhcC
Confidence 999999999999999964221135899999999999999984
No 9
>COG2357 PpGpp synthetase catalytic domain [General function prediction only]
Probab=99.94 E-value=5.2e-27 Score=233.94 Aligned_cols=117 Identities=33% Similarity=0.426 Sum_probs=104.2
Q ss_pred eEEEEEecChHHHHHHHHhcCCCc------ccccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccccccccc
Q 006686 371 TEIRSVCKEPYSIYKAVLKSRGSI------NEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMK 444 (635)
Q Consensus 371 ~~V~~R~K~~~SI~~Km~rk~~~~------~~I~Di~giRIIv~~~~~~~~~~~~~~~~dcY~vlg~vh~~~~p~~~~~k 444 (635)
-.|++|+|++.||..|++||+.++ +.|+||+|+||+ |.|.+|.|.+..++.+.........|
T Consensus 53 e~Vt~RvK~~~Si~~Kl~RK~~~i~~~~~~e~i~DIaGIRI~------------c~F~~DI~~v~~~l~~~~d~~iv~~k 120 (231)
T COG2357 53 EHVTSRVKSPESILEKLRRKGLEITYENLKEDIQDIAGIRII------------CQFVDDIYRVVDLLKSRKDFTIVEEK 120 (231)
T ss_pred HHHhhccCCHHHHHHHHHhcCCCCChHHHHhHHHhhcceeEe------------eehHhhHHHHHHHHhcccCccchhHH
Confidence 479999999999999999998543 689999999998 78999999999999987666667899
Q ss_pred ccccCCCCCCCcceEEEE-ecc---CCCCceeEEEEEechhhHHHHHHHHHhhccCccc
Q 006686 445 DYIATPKPNGYQSLHTTL-IPF---LYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVF 499 (635)
Q Consensus 445 DYIa~PK~nGYqSLHt~V-~~~---~~~~~~~vEIQIRT~~Mh~wAE~G~aah~~yK~~ 499 (635)
|||.+||+|||||+|++| +|- .+...+.+||||||..||.||++.|...|+|.+.
T Consensus 121 Dyi~n~k~~GYRS~Hlive~pv~~~~~~~~~~vEIQIRTiam~fWAsiEH~l~YKy~~~ 179 (231)
T COG2357 121 DYIRNPKPNGYRSYHLILEVPVFTINGVKKVRVEIQIRTIAMDFWASIEHKLRYKYGGE 179 (231)
T ss_pred HHHhCCCCCCCceEEEEEeccchhhccccceEEEEehhHHHHHHHHHHHHHhhcccccc
Confidence 999999999999999999 552 2345689999999999999999999999999963
No 10
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=99.66 E-value=1e-16 Score=130.18 Aligned_cols=60 Identities=53% Similarity=0.854 Sum_probs=57.9
Q ss_pred ceeeCCCCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCCCccCCCCCEEEEEe
Q 006686 565 VFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (635)
Q Consensus 565 v~V~tPdG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL~~~L~~gd~VEIiT 624 (635)
|+|++|||++++||.|+|++|||++||+++++++++|+|||+.++|+++|++||+|||+|
T Consensus 1 I~v~lpdG~~~~~~~g~T~~d~A~~I~~~l~~~~~~A~Vng~~vdl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 1 IRVYLPDGSIKELPEGSTVLDVAYSIHSSLAKRAVAAKVNGQLVDLDHPLEDGDVVEIIT 60 (60)
T ss_dssp EEEEETTSCEEEEETTBBHHHHHHHHSHHHHHCEEEEEETTEEEETTSBB-SSEEEEEEE
T ss_pred CEEECCCCCeeeCCCCCCHHHHHHHHCHHHHhheeEEEEcCEECCCCCCcCCCCEEEEEC
Confidence 679999999999999999999999999999999999999999999999999999999997
No 11
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.98 E-value=7.8e-10 Score=93.87 Aligned_cols=52 Identities=33% Similarity=0.415 Sum_probs=49.0
Q ss_pred ceeecCCCCcHHHHHHHhchhhhcceEEEEE-------CCEecCCCccCCCCCEEEEEe
Q 006686 573 EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-------NGNLVSPTHVLANAEVVEIIT 624 (635)
Q Consensus 573 ~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkV-------NG~~vdL~~~L~~gd~VEIiT 624 (635)
+++.||.|+|+.|||++||+++++.+..|+| +|+.|+++++|++||+|||++
T Consensus 17 ~~liL~~GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI~~ 75 (75)
T cd01666 17 EPVILRRGSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQRVGLDHVLEDEDVVQIVK 75 (75)
T ss_pred CCEEECCCCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCeECCCCCEecCCCEEEEeC
Confidence 6899999999999999999999999888885 999999999999999999985
No 12
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=98.94 E-value=3e-09 Score=84.89 Aligned_cols=60 Identities=63% Similarity=1.042 Sum_probs=57.4
Q ss_pred ceeeCCCCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCCCccCCCCCEEEEEe
Q 006686 565 VFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (635)
Q Consensus 565 v~V~tPdG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL~~~L~~gd~VEIiT 624 (635)
|+||+|+|+.+++|.|.|+.|++..++..+.+..+++++||+.+|++++|.+||.||++|
T Consensus 1 ~~~~~~~g~~~~~~~~~t~~~~~~~~~~~~~~~~va~~vng~~vdl~~~l~~~~~ve~v~ 60 (60)
T cd01668 1 IYVFTPKGEIIELPAGATVLDFAYAIHTEIGNRCVGAKVNGKLVPLSTVLKDGDIVEIIT 60 (60)
T ss_pred CEEECCCCCEEEcCCCCCHHHHHHHHChHhhhheEEEEECCEECCCCCCCCCCCEEEEEC
Confidence 589999999999999999999999999888889999999999999999999999999986
No 13
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.85 E-value=3.8e-09 Score=89.97 Aligned_cols=51 Identities=37% Similarity=0.625 Sum_probs=46.9
Q ss_pred ceeecCCCCcHHHHHHHhchhhhcceE---EEEECCEecCCCccCCCCCEEEEEe
Q 006686 573 EIKNLPKGATVVDYAYMIHTEIGNKMV---AAKVNGNLVSPTHVLANAEVVEIIT 624 (635)
Q Consensus 573 ~~~~lp~GaT~lD~A~~Ih~~lg~~~v---~AkVNG~~vdL~~~L~~gd~VEIiT 624 (635)
+.+.+|.|+|+.|||+.||+++++.+. +++ ||+.++++++|++||+|+|+|
T Consensus 23 d~~~l~~GaTv~D~A~~IHtdi~~~f~~Ai~~k-~~~~vg~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 23 DAFLLPKGSTARDLAYAIHTDIGDGFLHAIDAR-TGRRVGEDYELKHRDVIKIVS 76 (76)
T ss_pred ceEEECCCCCHHHHHHHHHHHHHhcceeeEEee-CCEEeCCCcEecCCCEEEEeC
Confidence 588999999999999999999999854 457 999999999999999999997
No 14
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.67 E-value=7.6e-08 Score=75.04 Aligned_cols=59 Identities=44% Similarity=0.771 Sum_probs=55.5
Q ss_pred eeeCCCCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCCCccCCCCCEEEEEe
Q 006686 566 FVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (635)
Q Consensus 566 ~V~tPdG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL~~~L~~gd~VEIiT 624 (635)
.+..++|+.+++|.|+|+.|++..++..+.+..+++++||++++|+++|.+|+.|+++|
T Consensus 2 ~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~vn~~~~~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 2 IIFTPDGSAVELPKGATAMDFALKIHTDLGKGFIGALVNGQLVDLSYTLQDGDTVSIVT 60 (60)
T ss_pred EEECCCCCEEEcCCCCCHHHHHHHHHHHHHhheEEEEECCEECCCCcCcCCCCEEEEeC
Confidence 46778899999999999999999999988899999999999999999999999999986
No 15
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=98.57 E-value=2.2e-07 Score=72.93 Aligned_cols=60 Identities=42% Similarity=0.586 Sum_probs=56.0
Q ss_pred eeeCCCCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCCCccCCCCCEEEEEec
Q 006686 566 FVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (635)
Q Consensus 566 ~V~tPdG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL~~~L~~gd~VEIiT~ 625 (635)
.+..|+|..+.+|.|+|+.|+++.++...++..+++++||+++||.+++.+|+.|+++++
T Consensus 2 ~i~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~v~~~vng~~~dL~~~l~~~~~ie~i~~ 61 (61)
T cd01667 2 KITLPDGSVKEFPKGTTPLDIAKSISPGLAKKAVAAKVNGELVDLSRPLEEDCELEIITF 61 (61)
T ss_pred EEEcCCCCEEEeCCCCCHHHHHHHHHHHHHhheEEEEECCEEecCCcCcCCCCEEEEEeC
Confidence 467789999999999999999999998888999999999999999999999999999974
No 16
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=98.35 E-value=5.4e-07 Score=104.41 Aligned_cols=70 Identities=31% Similarity=0.423 Sum_probs=66.8
Q ss_pred CceeeCCCCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCCCccCCCCCEEEEEecCCcccccc
Q 006686 564 RVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNVSFSLTI 633 (635)
Q Consensus 564 ~v~V~tPdG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL~~~L~~gd~VEIiT~~d~Egl~~ 633 (635)
+++|..|+|..+++|.|+|+.|+|+.+++..++.+++|+|||++++|++++.+|+.||++|..+++|+.+
T Consensus 1 ~~~i~~~~g~~~~~~~gtt~~dia~~~~~~~~~~~v~a~vng~l~dL~~~l~~d~~Vefi~~~~~~g~~~ 70 (638)
T PRK00413 1 MIKITLPDGSVREFEAGVTVADVAASISPGLAKAAVAGKVNGELVDLSTPIEEDASLEIITAKDEEGLEI 70 (638)
T ss_pred CcEEEeCCCCEEEeCCCCCHHHHHHHhhhhchhheEEEEECCEEeeCCccccCCCceeeeeccchhhHHH
Confidence 3678899999999999999999999999999999999999999999999999999999999999999876
No 17
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=98.09 E-value=3.6e-06 Score=97.79 Aligned_cols=72 Identities=31% Similarity=0.361 Sum_probs=68.2
Q ss_pred cCCceeeCCCCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCCCccCCCCCEEEEEecCCcccccc
Q 006686 562 GSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNVSFSLTI 633 (635)
Q Consensus 562 ~~~v~V~tPdG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL~~~L~~gd~VEIiT~~d~Egl~~ 633 (635)
++++.|..|+|..+++|.|+|+.|+|..+.+......++|+|||+++||++++.+++.|+++|.++++|+.+
T Consensus 3 ~~mi~i~~~~~~~~~~~~g~t~~~ia~~~~~~~~~~iv~a~vn~~l~dL~~~i~~d~~i~fv~~~~~~g~~i 74 (639)
T PRK12444 3 EQMIEIKFPDGSVKEFVKGITLEEIAGSISSSLKKKAVAGKVNDKLYDLRRNLEEDAEVEIITIDSNEGVEI 74 (639)
T ss_pred CCCeEEEeCCCCEEEecCCCCHHHHHHHhhhhcchheEEEEECCEEEEcCcccCCCCeEEEecCCChHHHHH
Confidence 456889999999999999999999999999999999999999999999999999999999999999999876
No 18
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=98.08 E-value=8.3e-06 Score=80.18 Aligned_cols=71 Identities=23% Similarity=0.361 Sum_probs=56.6
Q ss_pred hcCCccccCC--ccchhHHHHHHHHHhcCCCHHHHHHHhhccc---cccCCC-------------CCHHHHHHHhChHHH
Q 006686 160 HDGQKRRSGE--PFIIHPVEVARILGELELDWESIAAGLLHDT---VEDTNV-------------VTFERIEEEFGATVR 221 (635)
Q Consensus 160 H~gQ~RksGe--PYi~Hpl~VA~iLa~l~~D~~tI~AALLHDv---vEDT~~-------------~T~e~I~~~FG~~Va 221 (635)
+.|+...+|+ |++.|++.+|.+...-|.|++.|+||||||+ ++|.+. +..+.|+..||++|+
T Consensus 13 ~~g~~~y~Ge~Vs~leH~LQ~A~lA~~~Gad~elvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~Lr~~F~~~V~ 92 (179)
T TIGR03276 13 EHGARQYGGEAVSQLEHALQCAQLAEAAGADDELIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYLRELFSPSVT 92 (179)
T ss_pred hcCccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHHHHHcCHHHH
Confidence 3445456776 5899999999998889999999999999998 776531 124678888999999
Q ss_pred HHHHhhhcc
Q 006686 222 RIVEGETKV 230 (635)
Q Consensus 222 ~LV~gvTkv 230 (635)
.+|..-...
T Consensus 93 ~lV~~Hv~a 101 (179)
T TIGR03276 93 EPIRLHVQA 101 (179)
T ss_pred HHHHHHHHH
Confidence 999986643
No 19
>PLN02908 threonyl-tRNA synthetase
Probab=98.08 E-value=8e-06 Score=95.71 Aligned_cols=95 Identities=23% Similarity=0.255 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCChhhhHhhhhhhhccCCceeeCCCCceeecCC-CCcHHHHHHHhchhhhcceEEEEEC
Q 006686 526 IALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLGSRVFVFTPRGEIKNLPK-GATVVDYAYMIHTEIGNKMVAAKVN 604 (635)
Q Consensus 526 ~~~~~~wl~~l~~~~~~~~~~~~~~ef~~~i~~dL~~~~v~V~tPdG~~~~lp~-GaT~lD~A~~Ih~~lg~~~v~AkVN 604 (635)
+..|+.-++++.+-|.+. +... -.++|.|..|||..++.+. |+|+.|+|..|+..+...+++|+||
T Consensus 26 ~~~r~~~f~~~~~~~~~~---------~~~~----~~~~i~i~~~dg~~~~~~~~~tt~~~ia~~i~~~~~~~~v~a~Vn 92 (686)
T PLN02908 26 IKKRIELFEKIQARQLAR---------LESA----GGDPIKVTLPDGAVKDGKKWVTTPMDIAKEISKGLANSALIAQVD 92 (686)
T ss_pred HHHHHHHHHHHHHHHHHH---------hhhc----cCCceEEEeCCCceEeecCCCCCHHHHHHHhCccchhhcEEEEEC
Confidence 455666666664444331 1111 2347899999999999994 6999999999999999999999999
Q ss_pred CEecCCCccCCCCCEEEEEecCCcccccc
Q 006686 605 GNLVSPTHVLANAEVVEIITYNVSFSLTI 633 (635)
Q Consensus 605 G~~vdL~~~L~~gd~VEIiT~~d~Egl~~ 633 (635)
|+++||+++|+.++.|++++.++++|+.+
T Consensus 93 g~l~dL~~~l~~d~~le~l~~~~~eg~~~ 121 (686)
T PLN02908 93 GVLWDMTRPLEGDCKLKLFKFDDDEGRDT 121 (686)
T ss_pred CEEeecCccccCCCeeEEeccccHHHHHH
Confidence 99999999999999999999999999875
No 20
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.03 E-value=7.9e-06 Score=69.70 Aligned_cols=52 Identities=23% Similarity=0.304 Sum_probs=48.8
Q ss_pred ceeecCCCCcHHHHHHHhchhhhcceEEEEECC-EecCCCccCCCCCEEEEEe
Q 006686 573 EIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNG-NLVSPTHVLANAEVVEIIT 624 (635)
Q Consensus 573 ~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG-~~vdL~~~L~~gd~VEIiT 624 (635)
+.+.+|+|+|+.|+|+.||+++.+....|.+.| +.+.+++.|++||+|+|++
T Consensus 24 ~~~~l~~g~tv~d~a~~IH~d~~~~F~~A~v~~~~~vg~d~~l~d~DVv~i~~ 76 (76)
T cd04938 24 DCVLVKKGTTVGDVARKIHGDLEKGFIEAVGGRRRLEGKDVILGKNDILKFKT 76 (76)
T ss_pred eeEEEcCCCCHHHHHHHHhHHHHhccEEEEEccCEEECCCEEecCCCEEEEEC
Confidence 578889999999999999999999999999988 9999999999999999985
No 21
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.86 E-value=1.4e-05 Score=87.90 Aligned_cols=51 Identities=33% Similarity=0.544 Sum_probs=46.9
Q ss_pred eeecCCCCcHHHHHHHhchhhhcceE---EEEECCEecCCCccCCCCCEEEEEec
Q 006686 574 IKNLPKGATVVDYAYMIHTEIGNKMV---AAKVNGNLVSPTHVLANAEVVEIITY 625 (635)
Q Consensus 574 ~~~lp~GaT~lD~A~~Ih~~lg~~~v---~AkVNG~~vdL~~~L~~gd~VEIiT~ 625 (635)
.+.+|.|+|+.|||+.||++++++++ .++ +++.++++|+|++||+|+|+|.
T Consensus 342 ~~~l~~g~t~~d~A~~IH~d~~~~fi~A~~~~-~~~~~g~~~~l~dgDiv~i~~~ 395 (396)
T PRK09602 342 AFLLPKGSTARDLAYKIHTDIGEGFLYAIDAR-TKRRIGEDYELKDGDVIKIVST 395 (396)
T ss_pred eEEECCCCCHHHHHHHHHHHHHhhceehhccc-CCcccCCCcEecCCCEEEEEeC
Confidence 88999999999999999999999964 555 7899999999999999999985
No 22
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.40 E-value=0.00025 Score=75.39 Aligned_cols=70 Identities=31% Similarity=0.449 Sum_probs=57.0
Q ss_pred hhhhhhcc--CCceeeC-CCC------ceeecCCCCcHHHHHHHhchhhhcceEEEEEC-------CEecCCCccCCCCC
Q 006686 555 TITRDLLG--SRVFVFT-PRG------EIKNLPKGATVVDYAYMIHTEIGNKMVAAKVN-------GNLVSPTHVLANAE 618 (635)
Q Consensus 555 ~i~~dL~~--~~v~V~t-PdG------~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVN-------G~~vdL~~~L~~gd 618 (635)
.++.++|. +-|+||| |.| +++-+..|+|+.||+..||.++..+..-|+|. |+.|.++|+|+++|
T Consensus 279 ~L~e~i~~~L~liRVYtK~~g~~pd~~~PlIlr~GsTV~Dvc~~IH~~l~~~FryA~VWGkSvk~~~QrVG~dHvLeD~D 358 (365)
T COG1163 279 ELKERIWDVLGLIRVYTKPPGEEPDFDEPLILRRGSTVGDVCRKIHRDLVENFRYARVWGKSVKHPGQRVGLDHVLEDED 358 (365)
T ss_pred HHHHHHHHhhCeEEEEecCCCCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHhcceEEEeccCCCCCccccCcCcCccCCC
Confidence 34444443 4678888 334 67888999999999999999999998888885 47899999999999
Q ss_pred EEEEEe
Q 006686 619 VVEIIT 624 (635)
Q Consensus 619 ~VEIiT 624 (635)
+|+|+.
T Consensus 359 IV~I~~ 364 (365)
T COG1163 359 IVEIHA 364 (365)
T ss_pred eEEEee
Confidence 999974
No 23
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=97.40 E-value=0.00051 Score=56.42 Aligned_cols=53 Identities=32% Similarity=0.522 Sum_probs=46.2
Q ss_pred CCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecC----CCccCCCCCEEEEEec
Q 006686 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS----PTHVLANAEVVEIITY 625 (635)
Q Consensus 571 dG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vd----L~~~L~~gd~VEIiT~ 625 (635)
+|+.+++|+|.|+.|+..... +....++..+||+.++ .+++|++||.|||+++
T Consensus 6 NG~~~~~~~~~tl~~lL~~l~--~~~~~vav~vNg~iv~r~~~~~~~l~~gD~vei~~~ 62 (66)
T PRK05659 6 NGEPRELPDGESVAALLAREG--LAGRRVAVEVNGEIVPRSQHASTALREGDVVEIVHA 62 (66)
T ss_pred CCeEEEcCCCCCHHHHHHhcC--CCCCeEEEEECCeEeCHHHcCcccCCCCCEEEEEEE
Confidence 789999999999999988764 3456677889999998 8999999999999985
No 24
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=97.34 E-value=0.0005 Score=56.52 Aligned_cols=53 Identities=26% Similarity=0.453 Sum_probs=46.8
Q ss_pred CCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCCC----ccCCCCCEEEEEec
Q 006686 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT----HVLANAEVVEIITY 625 (635)
Q Consensus 571 dG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL~----~~L~~gd~VEIiT~ 625 (635)
+|+.+++|.+.|+.|+...+. +....++..|||+.++.+ ++|++||.|+|+++
T Consensus 5 Ng~~~~~~~~~tv~~ll~~l~--~~~~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii~~ 61 (65)
T cd00565 5 NGEPREVEEGATLAELLEELG--LDPRGVAVALNGEIVPRSEWASTPLQDGDRIEIVTA 61 (65)
T ss_pred CCeEEEcCCCCCHHHHHHHcC--CCCCcEEEEECCEEcCHHHcCceecCCCCEEEEEEe
Confidence 689999999999999998875 344567888999999999 89999999999985
No 25
>PRK06437 hypothetical protein; Provisional
Probab=97.29 E-value=0.00084 Score=55.86 Aligned_cols=60 Identities=18% Similarity=0.105 Sum_probs=49.0
Q ss_pred CceeeCCCCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCCCccCCCCCEEEEEec
Q 006686 564 RVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (635)
Q Consensus 564 ~v~V~tPdG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL~~~L~~gd~VEIiT~ 625 (635)
+|+|--+.-+.++++.|.|+.|+...+.- -...+++.+||+.++.++.|++||.|+|+++
T Consensus 4 ~~~v~g~~~~~~~i~~~~tv~dLL~~Lgi--~~~~vaV~vNg~iv~~~~~L~dgD~Veiv~~ 63 (67)
T PRK06437 4 MIRVKGHINKTIEIDHELTVNDIIKDLGL--DEEEYVVIVNGSPVLEDHNVKKEDDVLILEV 63 (67)
T ss_pred eEEecCCcceEEEcCCCCcHHHHHHHcCC--CCccEEEEECCEECCCceEcCCCCEEEEEec
Confidence 45565334478999999999999988753 3455677799999999999999999999985
No 26
>PRK07440 hypothetical protein; Provisional
Probab=97.13 E-value=0.0013 Score=55.17 Aligned_cols=59 Identities=19% Similarity=0.362 Sum_probs=49.4
Q ss_pred CceeeCCCCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecC----CCccCCCCCEEEEEec
Q 006686 564 RVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS----PTHVLANAEVVEIITY 625 (635)
Q Consensus 564 ~v~V~tPdG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vd----L~~~L~~gd~VEIiT~ 625 (635)
.|.|+. +|+.++++.|.|+.|+...+. +....+++.+||+.++ -++.|++||.|||+++
T Consensus 4 ~m~i~v-NG~~~~~~~~~tl~~lL~~l~--~~~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv~~ 66 (70)
T PRK07440 4 PITLQV-NGETRTCSSGTSLPDLLQQLG--FNPRLVAVEYNGEILHRQFWEQTQVQPGDRLEIVTI 66 (70)
T ss_pred ceEEEE-CCEEEEcCCCCCHHHHHHHcC--CCCCeEEEEECCEEeCHHHcCceecCCCCEEEEEEE
Confidence 344443 678999999999999987764 3457889999999999 8889999999999985
No 27
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=96.98 E-value=0.0021 Score=52.50 Aligned_cols=52 Identities=27% Similarity=0.388 Sum_probs=44.4
Q ss_pred CCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCC----CccCCCCCEEEEEec
Q 006686 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSP----THVLANAEVVEIITY 625 (635)
Q Consensus 571 dG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL----~~~L~~gd~VEIiT~ 625 (635)
+|+.+++|.|+|+.|+...+.-. ..++.-+||+.++- ++.|++||.|||+++
T Consensus 6 Ng~~~~~~~~~tl~~ll~~l~~~---~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~~~ 61 (65)
T PRK06944 6 NQQTLSLPDGATVADALAAYGAR---PPFAVAVNGDFVARTQHAARALAAGDRLDLVQP 61 (65)
T ss_pred CCEEEECCCCCcHHHHHHhhCCC---CCeEEEECCEEcCchhcccccCCCCCEEEEEee
Confidence 78999999999999998877542 44688899999986 578999999999985
No 28
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=96.94 E-value=0.0028 Score=53.08 Aligned_cols=53 Identities=25% Similarity=0.448 Sum_probs=47.0
Q ss_pred CCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecC----CCccCCCCCEEEEEec
Q 006686 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS----PTHVLANAEVVEIITY 625 (635)
Q Consensus 571 dG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vd----L~~~L~~gd~VEIiT~ 625 (635)
+|+..+++.+.|+.|+...+. +...-+++.+||+.++ .++.|++||.|||+++
T Consensus 8 ng~~~e~~~~~tv~dLL~~l~--~~~~~vav~vNg~iVpr~~~~~~~l~~gD~ievv~~ 64 (68)
T COG2104 8 NGKEVEIAEGTTVADLLAQLG--LNPEGVAVAVNGEIVPRSQWADTILKEGDRIEVVRV 64 (68)
T ss_pred CCEEEEcCCCCcHHHHHHHhC--CCCceEEEEECCEEccchhhhhccccCCCEEEEEEe
Confidence 389999999999999988765 4457789999999999 9999999999999985
No 29
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=96.88 E-value=0.0029 Score=52.98 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=43.8
Q ss_pred eeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCCCccCCCCCEEEEEec
Q 006686 574 IKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (635)
Q Consensus 574 ~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL~~~L~~gd~VEIiT~ 625 (635)
.++++.|.|+.|+...+. +....++..+||+.++.++.|++||.|+|+++
T Consensus 17 ~~~~~~~~tv~~ll~~l~--~~~~~v~v~vNg~iv~~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 17 EIEWRKGMKVADILRAVG--FNTESAIAKVNGKVALEDDPVKDGDYVEVIPV 66 (70)
T ss_pred EEEcCCCCcHHHHHHHcC--CCCccEEEEECCEECCCCcCcCCCCEEEEEcc
Confidence 777899999999998874 33466888999999999999999999999975
No 30
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=96.84 E-value=0.0028 Score=52.74 Aligned_cols=53 Identities=21% Similarity=0.445 Sum_probs=46.2
Q ss_pred CCceeecCCC-CcHHHHHHHhchhhhcceEEEEECCEecCCC----ccCCCCCEEEEEec
Q 006686 571 RGEIKNLPKG-ATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT----HVLANAEVVEIITY 625 (635)
Q Consensus 571 dG~~~~lp~G-aT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL~----~~L~~gd~VEIiT~ 625 (635)
+|+.++++.+ +|+.|+...+. +-...+++-+||+.++-+ +.|++||.|||+++
T Consensus 6 NG~~~~~~~~~~tv~~lL~~l~--~~~~~vav~vN~~iv~r~~w~~~~L~~gD~iEIv~~ 63 (67)
T PRK07696 6 NGNQIEVPESVKTVAELLTHLE--LDNKIVVVERNKDILQKDDHTDTSVFDGDQIEIVTF 63 (67)
T ss_pred CCEEEEcCCCcccHHHHHHHcC--CCCCeEEEEECCEEeCHHHcCceecCCCCEEEEEEE
Confidence 6899999998 79999988764 345678899999999998 79999999999985
No 31
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=96.82 E-value=0.0037 Score=51.21 Aligned_cols=53 Identities=26% Similarity=0.453 Sum_probs=45.0
Q ss_pred CCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCC----CccCCCCCEEEEEec
Q 006686 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSP----THVLANAEVVEIITY 625 (635)
Q Consensus 571 dG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL----~~~L~~gd~VEIiT~ 625 (635)
+|+.+++|.|.|+.|+...+.-. ...++..+||+.++- ++.|++||.|+|+++
T Consensus 4 Ng~~~~~~~~~tv~~ll~~l~~~--~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~~ 60 (64)
T TIGR01683 4 NGEPVEVEDGLTLAALLESLGLD--PRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVTF 60 (64)
T ss_pred CCeEEEcCCCCcHHHHHHHcCCC--CCeEEEEECCEEcCHHHcCceecCCCCEEEEEEe
Confidence 68999999999999999887533 467788999999963 358999999999985
No 32
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=96.78 E-value=0.0043 Score=51.25 Aligned_cols=53 Identities=11% Similarity=0.211 Sum_probs=45.0
Q ss_pred CCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecC----CCccCCCCCEEEEEec
Q 006686 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS----PTHVLANAEVVEIITY 625 (635)
Q Consensus 571 dG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vd----L~~~L~~gd~VEIiT~ 625 (635)
+|+.++++.+.|+.|+...+.- ....++.-+||+.++ -++.|++||.|||+++
T Consensus 6 Ng~~~~~~~~~tl~~ll~~l~~--~~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 6 NDQPMQCAAGQTVHELLEQLNQ--LQPGAALAINQQIIPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_pred CCeEEEcCCCCCHHHHHHHcCC--CCCcEEEEECCEEeChHHcCccccCCCCEEEEEEE
Confidence 7899999999999999877643 245688999999999 4458999999999985
No 33
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.61 E-value=0.00058 Score=75.06 Aligned_cols=64 Identities=22% Similarity=0.251 Sum_probs=59.3
Q ss_pred CCCCceeec-CCCCcHHHHHHHhchhhhcceEEEEECCEecCCCccCCCCCEEEEEecCCccccccc
Q 006686 569 TPRGEIKNL-PKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNVSFSLTIA 634 (635)
Q Consensus 569 tPdG~~~~l-p~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL~~~L~~gd~VEIiT~~d~Egl~~~ 634 (635)
+|||..++- ..++||.|+|.. +.++++.++.++|||.+-||+.||+.+. +|+++++|+||++++
T Consensus 5 Lpdg~~~~~~~w~ttp~~ia~~-s~~la~~~~~~~vn~~~~Dl~rp~e~~~-lell~f~~~~~k~vf 69 (560)
T KOG1637|consen 5 LPDGKVVEGVSWETTPYDIACQ-SKGLADDAVIAKVNGVLWDLDRPLEGDC-LELLKFDDDEGKDVF 69 (560)
T ss_pred cCCcceeeeeeccCChhHHhhh-ccchhhhhHHHhhcCceeccCCcchhhH-HHHccCCCcccceee
Confidence 999987776 468999999999 9999999999999999999999999888 999999999999875
No 34
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=96.45 E-value=0.0081 Score=49.31 Aligned_cols=52 Identities=25% Similarity=0.328 Sum_probs=43.5
Q ss_pred CCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCC----CccCCCCCEEEEEec
Q 006686 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSP----THVLANAEVVEIITY 625 (635)
Q Consensus 571 dG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL----~~~L~~gd~VEIiT~ 625 (635)
+|+.++++ +.|+.|+...+. +....+++-+||+.++. +++|++||.|||+++
T Consensus 6 Ng~~~~~~-~~tl~~Ll~~l~--~~~~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 6 NGETLQTE-ATTLALLLAELD--YEGNWLATAVNGELVHKEARAQFVLHEGDRIEILSP 61 (65)
T ss_pred CCeEEEcC-cCcHHHHHHHcC--CCCCeEEEEECCEEcCHHHcCccccCCCCEEEEEEe
Confidence 67899994 679999987764 33467889999999998 789999999999985
No 35
>PTZ00258 GTP-binding protein; Provisional
Probab=96.43 E-value=0.0044 Score=68.26 Aligned_cols=62 Identities=19% Similarity=0.302 Sum_probs=53.3
Q ss_pred CceeeC--CC-CceeecCCCCcHHHHHHHhchhhhcceEEEEE----------------C-C--EecCCCccCCCCCEEE
Q 006686 564 RVFVFT--PR-GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKV----------------N-G--NLVSPTHVLANAEVVE 621 (635)
Q Consensus 564 ~v~V~t--Pd-G~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkV----------------N-G--~~vdL~~~L~~gd~VE 621 (635)
.|.+|| || -+...+|.|+|+.|+|+.||+++++..+.|.| . | +.+.-+|.+++||+|+
T Consensus 304 li~ffT~g~~e~raw~i~~Gsta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGDIi~ 383 (390)
T PTZ00258 304 LIHFFTAGPDEVRCWTIQKGTKAPQAAGVIHSDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGDIIF 383 (390)
T ss_pred CEEEEcCCCCceeEEEeCCCCcHHHHHhhhhhHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCCEEE
Confidence 666777 22 26888999999999999999999999999999 2 5 7899999999999999
Q ss_pred EEec
Q 006686 622 IITY 625 (635)
Q Consensus 622 IiT~ 625 (635)
|...
T Consensus 384 f~fn 387 (390)
T PTZ00258 384 FKFN 387 (390)
T ss_pred EEec
Confidence 9653
No 36
>PRK01777 hypothetical protein; Validated
Probab=96.40 E-value=0.0065 Score=54.13 Aligned_cols=53 Identities=23% Similarity=0.159 Sum_probs=40.5
Q ss_pred ceeecCCCCcHHHHHHHhch-----hhhcceEEEEECCEecCCCccCCCCCEEEEEec
Q 006686 573 EIKNLPKGATVVDYAYMIHT-----EIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (635)
Q Consensus 573 ~~~~lp~GaT~lD~A~~Ih~-----~lg~~~v~AkVNG~~vdL~~~L~~gd~VEIiT~ 625 (635)
...++|.|+|+.|+..+.+- ++.-.....-|||+.++++++|++||.|||.-+
T Consensus 19 ~~l~vp~GtTv~dal~~sgi~~~~pei~~~~~~vgI~Gk~v~~d~~L~dGDRVeIyrP 76 (95)
T PRK01777 19 QRLTLQEGATVEEAIRASGLLELRTDIDLAKNKVGIYSRPAKLTDVLRDGDRVEIYRP 76 (95)
T ss_pred EEEEcCCCCcHHHHHHHcCCCccCcccccccceEEEeCeECCCCCcCCCCCEEEEecC
Confidence 36789999999999887641 221111244589999999999999999999653
No 37
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=96.25 E-value=0.011 Score=50.68 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=44.6
Q ss_pred CCceeecCCCCcHHHHHHHh---chhhhc--ceEEEEECCEecCCCccCCCCCEEEEEec
Q 006686 571 RGEIKNLPKGATVVDYAYMI---HTEIGN--KMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (635)
Q Consensus 571 dG~~~~lp~GaT~lD~A~~I---h~~lg~--~~v~AkVNG~~vdL~~~L~~gd~VEIiT~ 625 (635)
++..+++|.|+|+.|+...+ ++.+.. ..+..-|||+.++.+++|++||.|+|+.+
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~~~l~dgDeVai~Pp 78 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTESAALKDGDELAIIPP 78 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCCcCcCCCCEEEEeCC
Confidence 44678888999999988777 444443 44567899999999999999999999875
No 38
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=95.94 E-value=0.016 Score=50.57 Aligned_cols=53 Identities=8% Similarity=0.172 Sum_probs=45.8
Q ss_pred CCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCCC----ccCCCCCEEEEEec
Q 006686 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT----HVLANAEVVEIITY 625 (635)
Q Consensus 571 dG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL~----~~L~~gd~VEIiT~ 625 (635)
+|+.++++.+.|+.|+...+. +....++.-+||+.++-+ +.|++||.|||+++
T Consensus 24 NG~~~~~~~~~tl~~LL~~l~--~~~~~vAVevNg~iVpr~~w~~t~L~egD~IEIv~~ 80 (84)
T PRK06083 24 NDQSIQVDISSSLAQIIAQLS--LPELGCVFAINNQVVPRSEWQSTVLSSGDAISLFQA 80 (84)
T ss_pred CCeEEEcCCCCcHHHHHHHcC--CCCceEEEEECCEEeCHHHcCcccCCCCCEEEEEEE
Confidence 789999999999999988763 556778889999999864 47999999999985
No 39
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=95.85 E-value=0.018 Score=47.50 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=44.2
Q ss_pred CCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCC---CccCCCCCEEEEEec
Q 006686 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSP---THVLANAEVVEIITY 625 (635)
Q Consensus 571 dG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL---~~~L~~gd~VEIiT~ 625 (635)
+|+.++++++.|+.|+...+. +....++.-+||..++- ++.|++||.|||+++
T Consensus 6 NG~~~~~~~~~tl~~ll~~l~--~~~~~vav~~N~~iv~r~~~~~~L~~gD~ieIv~~ 61 (65)
T PRK05863 6 NEEQVEVDEQTTVAALLDSLG--FPEKGIAVAVDWSVLPRSDWATKLRDGARLEVVTA 61 (65)
T ss_pred CCEEEEcCCCCcHHHHHHHcC--CCCCcEEEEECCcCcChhHhhhhcCCCCEEEEEee
Confidence 789999999999999988764 44567899999986553 457999999999985
No 40
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=95.83 E-value=0.024 Score=47.76 Aligned_cols=53 Identities=30% Similarity=0.295 Sum_probs=44.6
Q ss_pred ceeecCCCCcHHHHHHHhchhh------hcceEEEEECCEecCCCccCCCCCEEEEEec
Q 006686 573 EIKNLPKGATVVDYAYMIHTEI------GNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (635)
Q Consensus 573 ~~~~lp~GaT~lD~A~~Ih~~l------g~~~v~AkVNG~~vdL~~~L~~gd~VEIiT~ 625 (635)
..+++|.|+|+.|+...+.... ....+.+-|||+.++.+++|++||.|.|+.+
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~~l~~gD~v~i~pp 76 (80)
T cd00754 18 EELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDTPLKDGDEVAIIPP 76 (80)
T ss_pred EEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCcccCCCCEEEEeCC
Confidence 4667888999999988886442 3457888999999999999999999999875
No 41
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=95.48 E-value=0.03 Score=48.48 Aligned_cols=48 Identities=31% Similarity=0.357 Sum_probs=41.3
Q ss_pred eeecCCCCcHHHHHHHh---chhhhcceEEEEECCEecCCCccCCCCCEEEEEec
Q 006686 574 IKNLPKGATVVDYAYMI---HTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (635)
Q Consensus 574 ~~~lp~GaT~lD~A~~I---h~~lg~~~v~AkVNG~~vdL~~~L~~gd~VEIiT~ 625 (635)
...++.++|+.|+..++ |+++| ...|||+.+++++.+++||.|.+...
T Consensus 26 ~~~~~~~~tvkd~IEsLGVP~tEV~----~i~vNG~~v~~~~~~~~Gd~v~V~P~ 76 (81)
T PF14451_consen 26 THPFDGGATVKDVIESLGVPHTEVG----LILVNGRPVDFDYRLKDGDRVAVYPV 76 (81)
T ss_pred EEecCCCCcHHHHHHHcCCChHHeE----EEEECCEECCCcccCCCCCEEEEEec
Confidence 56788999999999998 66555 36789999999999999999999764
No 42
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=95.27 E-value=0.035 Score=46.32 Aligned_cols=54 Identities=28% Similarity=0.363 Sum_probs=46.7
Q ss_pred CceeecCCCCcHHHHHHHhchhhh----cceEEEEECCEecCC---CccCCCCCEEEEEec
Q 006686 572 GEIKNLPKGATVVDYAYMIHTEIG----NKMVAAKVNGNLVSP---THVLANAEVVEIITY 625 (635)
Q Consensus 572 G~~~~lp~GaT~lD~A~~Ih~~lg----~~~v~AkVNG~~vdL---~~~L~~gd~VEIiT~ 625 (635)
.....++.++|+.|+...+..... ...+..-|||+.++. +++|++||.|.|+++
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~~~~~~~l~~gD~V~i~pp 73 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPDDGLDTPLKDGDEVAILPP 73 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGGGTTTSBEETTEEEEEEES
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCCccCCcCcCCCCEEEEECC
Confidence 357788899999999999977764 266788899999999 999999999999985
No 43
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=94.56 E-value=0.076 Score=57.02 Aligned_cols=53 Identities=25% Similarity=0.399 Sum_probs=46.4
Q ss_pred CCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecC----CCccCCCCCEEEEEec
Q 006686 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVS----PTHVLANAEVVEIITY 625 (635)
Q Consensus 571 dG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vd----L~~~L~~gd~VEIiT~ 625 (635)
+|+.++++.|.|+.|+...+. +-.+.++..|||+.++ .+++|++||.|||+++
T Consensus 6 NGk~~el~e~~TL~dLL~~L~--i~~~~VAVeVNgeIVpr~~w~~t~LkeGD~IEII~~ 62 (326)
T PRK11840 6 NGEPRQVPAGLTIAALLAELG--LAPKKVAVERNLEIVPRSEYGQVALEEGDELEIVHF 62 (326)
T ss_pred CCEEEecCCCCcHHHHHHHcC--CCCCeEEEEECCEECCHHHcCccccCCCCEEEEEEE
Confidence 789999999999999988764 3456778889999999 6779999999999997
No 44
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=94.17 E-value=0.048 Score=47.56 Aligned_cols=49 Identities=31% Similarity=0.396 Sum_probs=29.4
Q ss_pred eeecCCCCcHHHHHHH-----hchhh--hcceEEEEECCEecCCCccCCCCCEEEEEe
Q 006686 574 IKNLPKGATVVDYAYM-----IHTEI--GNKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (635)
Q Consensus 574 ~~~lp~GaT~lD~A~~-----Ih~~l--g~~~v~AkVNG~~vdL~~~L~~gd~VEIiT 624 (635)
..++|.|+|+.|...+ ..+++ ....+| |.|+.+.++++|++||.|||.-
T Consensus 17 ~l~vp~GtTv~~Ai~~Sgi~~~~p~idl~~~~vG--IfGk~~~~d~~L~~GDRVEIYR 72 (84)
T PF03658_consen 17 TLEVPEGTTVAQAIEASGILEQFPEIDLEKNKVG--IFGKLVKLDTVLRDGDRVEIYR 72 (84)
T ss_dssp EEEEETT-BHHHHHHHHTHHHH-TT--TTTSEEE--EEE-S--TT-B--TT-EEEEE-
T ss_pred EEECCCcCcHHHHHHHcCchhhCcccCcccceee--eeeeEcCCCCcCCCCCEEEEec
Confidence 5788999999997664 24444 344555 7899999999999999999954
No 45
>PRK14707 hypothetical protein; Provisional
Probab=93.37 E-value=0.53 Score=60.37 Aligned_cols=153 Identities=14% Similarity=0.113 Sum_probs=100.7
Q ss_pred ccccChhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhccccccceeEEEEEecChHHHHHHHHh----cCCCc--
Q 006686 321 FMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVCKEPYSIYKAVLK----SRGSI-- 394 (635)
Q Consensus 321 f~~l~P~~Y~~i~~~l~~~r~~~e~~l~~~~~~L~~~L~~~~~l~~~~i~~~V~~R~K~~~SI~~Km~r----k~~~~-- 394 (635)
|+-+.|+.-....+.+...-..-|..|...+. ..+...+ |.-.-...|.|+..|+.+|+.. ++.++
T Consensus 2263 ~~~~~p~~~~~~a~~Ll~~A~~~Ep~ITp~Lr---~ia~~~~-----G~L~GLe~RLKS~~SLkrKL~~~~~~~~~slee 2334 (2710)
T PRK14707 2263 LRDVQPQDIALKAQTLLGRARQMEPQVTDMLQ---NIAARHG-----GQLAGTQHQLKSYSSLQEKLKQRVALKKQSLEE 2334 (2710)
T ss_pred hccCCHHHHHHHHHHHHHHHHhccccccHHHH---HHHHHhc-----CcccchHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence 45566777666666666655555555554433 3333211 1112346699999999999963 34444
Q ss_pred --ccccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhh-cccccccccccccccCCCCCCCcceEEEEeccCCCCce
Q 006686 395 --NEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVH-GIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMF 471 (635)
Q Consensus 395 --~~I~Di~giRIIv~~~~~~~~~~~~~~~~dcY~vlg~vh-~~~~p~~~~~kDYIa~PK~nGYqSLHt~V~~~~~~~~~ 471 (635)
..|+|.+-.=||+++. .|...+..+++.+. ..|+.+ +++++- ..+.++|..+++++..+ .|.
T Consensus 2335 Aaa~VnDALRYTVVLpp~---------~Fva~~r~Il~aL~~qGy~~v--kvkN~F-~~~~~~YkGINvtL~~p---dG~ 2399 (2710)
T PRK14707 2335 AAASVNDALRYSVVLEPQ---------GFTAGLRAVLAALDDQGHARV--KLTNQF-TEYSPSFKAINLTLRSP---EGA 2399 (2710)
T ss_pred HHHHhhhheeEEEEcCch---------hHHHHHHHHHHHHHHcCCeEE--EEeecc-cCCCCCccceEEEEEcC---CCc
Confidence 6799988777887764 48888999988775 456544 566655 23458999999999643 347
Q ss_pred eEEEEEechhhHHHHHHHHHhhccCccc
Q 006686 472 RLEVQIRTEEMDLIAERGIAAHYSGRVF 499 (635)
Q Consensus 472 ~vEIQIRT~~Mh~wAE~G~aah~~yK~~ 499 (635)
.+|||.-|..--..-+. .|-.||+.
T Consensus 2400 ~FEIQFHT~qSF~LK~r---~HdLYKQ~ 2424 (2710)
T PRK14707 2400 LWEIQFHTPETFALKER---FHDLYKRT 2424 (2710)
T ss_pred EEEEEeccHHHHHHHHH---HHHHHHHH
Confidence 99999999876655553 56667753
No 46
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=93.25 E-value=0.28 Score=41.75 Aligned_cols=53 Identities=25% Similarity=0.300 Sum_probs=41.3
Q ss_pred ceeecCCC-CcHHHHHHHhchh---hhc--ceEEEEECCEecCCCccCCCCCEEEEEec
Q 006686 573 EIKNLPKG-ATVVDYAYMIHTE---IGN--KMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (635)
Q Consensus 573 ~~~~lp~G-aT~lD~A~~Ih~~---lg~--~~v~AkVNG~~vdL~~~L~~gd~VEIiT~ 625 (635)
..+++|.+ +|+.|+...+... +.. ..+..-|||+.++.+++|++||.|.|+.+
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~~~l~dgDevai~Pp 76 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDDALLNEGDEVAFIPP 76 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCCcCcCCCCEEEEeCC
Confidence 46677765 8999988877443 222 34677899999999999999999999864
No 47
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=92.26 E-value=0.22 Score=54.65 Aligned_cols=61 Identities=23% Similarity=0.321 Sum_probs=47.9
Q ss_pred CceeeCCCC---ceeecCCCCcHHHHHHHhchhhhcceEEEEE-----------------CCE--ecCCCccCCCCCEEE
Q 006686 564 RVFVFTPRG---EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-----------------NGN--LVSPTHVLANAEVVE 621 (635)
Q Consensus 564 ~v~V~tPdG---~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkV-----------------NG~--~vdL~~~L~~gd~VE 621 (635)
.|.+||-.. +...+++|+|+.|+|+.||+++++..+.|.| .|+ +..-+|.+++||+|.
T Consensus 280 li~fftvg~~evrawti~~GstA~~aAg~IHsD~~kgFI~AeVi~~~d~~~~g~~~~ak~~gk~rleGkdY~v~DGDIi~ 359 (364)
T PRK09601 280 LITYFTAGPKEVRAWTIKKGTTAPQAAGVIHTDFEKGFIRAEVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQDGDVMH 359 (364)
T ss_pred CEEEecCCCCeEEEEEeCCCCchHHHhhcchhhHhhccEEEEEecHHHHHHcCCHHHHHHccceeccCCceEecCCCEEE
Confidence 555565322 5778899999999999999999999988874 132 446789999999999
Q ss_pred EEe
Q 006686 622 IIT 624 (635)
Q Consensus 622 IiT 624 (635)
|-.
T Consensus 360 f~f 362 (364)
T PRK09601 360 FRF 362 (364)
T ss_pred EEc
Confidence 854
No 48
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=90.04 E-value=0.87 Score=39.26 Aligned_cols=52 Identities=27% Similarity=0.206 Sum_probs=39.7
Q ss_pred ceeecCCCCcHHHHHHHhchhhh---c----------ceEEEEECCEecCCCc--cCCCCCEEEEEec
Q 006686 573 EIKNLPKGATVVDYAYMIHTEIG---N----------KMVAAKVNGNLVSPTH--VLANAEVVEIITY 625 (635)
Q Consensus 573 ~~~~lp~GaT~lD~A~~Ih~~lg---~----------~~v~AkVNG~~vdL~~--~L~~gd~VEIiT~ 625 (635)
..+++| |+|+.|+...+..... . ..+..-|||+.++.+. +|++||.|.|+.+
T Consensus 18 ~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~~~l~dgdev~i~Pp 84 (88)
T TIGR01687 18 EEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLGTELKDGDVVAIFPP 84 (88)
T ss_pred EEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCCCCCCCCCEEEEeCC
Confidence 355667 8999999888843322 1 2367789999998877 9999999999864
No 49
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=89.14 E-value=0.46 Score=41.50 Aligned_cols=52 Identities=19% Similarity=0.344 Sum_probs=39.7
Q ss_pred ceeecCCCCcHHHHHHHhchhhhcceEEEEE-----------------CCE--ecCCCccCCCCCEEEEEe
Q 006686 573 EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-----------------NGN--LVSPTHVLANAEVVEIIT 624 (635)
Q Consensus 573 ~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkV-----------------NG~--~vdL~~~L~~gd~VEIiT 624 (635)
....++.|+|+-+.|..||+++.+..+.|.| .|+ ...-+|.+++||+|.+..
T Consensus 13 RaWti~~G~~Ap~aAG~IHsDfekgFI~Aevi~~~d~~~~~s~~~~k~~Gk~r~eGK~YivqDGDIi~f~f 83 (84)
T PF06071_consen 13 RAWTIRKGTTAPQAAGVIHSDFEKGFIRAEVISYDDFVEYGSEAAAKEAGKLRLEGKDYIVQDGDIIHFRF 83 (84)
T ss_dssp EEEEEETT-BHHHHHHCC-THHHHHEEEEEEEEHHHHHHHTSHHHHHHTT-SEEEETT-B--TTEEEEEEE
T ss_pred EEEEccCCCCHHHhHhHHHHHHHhhceEEEEEcHHHHHHcCCHHHHHHcCCccccCCceeEeCCCEEEEEc
Confidence 3567899999999999999999999999998 343 677789999999998853
No 50
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=86.24 E-value=2.5 Score=36.18 Aligned_cols=47 Identities=23% Similarity=0.217 Sum_probs=35.1
Q ss_pred CCCcHHHHHHHhchh-------hhcceEEEEECCEecCCCccCCCCCEEEEEec
Q 006686 579 KGATVVDYAYMIHTE-------IGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (635)
Q Consensus 579 ~GaT~lD~A~~Ih~~-------lg~~~v~AkVNG~~vdL~~~L~~gd~VEIiT~ 625 (635)
.|+|+.|+-..+... +....+..-||++.++++++|++||.|-|+.+
T Consensus 24 ~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~~~~l~dgDeVai~PP 77 (81)
T PRK11130 24 DFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPP 77 (81)
T ss_pred CCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCCCCCCCCCCEEEEeCC
Confidence 367888877766332 12233456789999999999999999999865
No 51
>PRK14707 hypothetical protein; Provisional
Probab=85.21 E-value=5.9 Score=51.64 Aligned_cols=203 Identities=15% Similarity=0.124 Sum_probs=114.6
Q ss_pred hHhhh----hh--ccCCCCcchhhHHHHHHHHHHHHHhhhcHHHH-HHHHhcc--cccccChhhHH----------HHHH
Q 006686 274 RLHNM----RT--LSHMPPHKQSSIATETLQVFAPLAKLLGMYQI-KSELENL--SFMYTNAEDYA----------KVKR 334 (635)
Q Consensus 274 RLhNm----Rt--L~~~~~~kq~~iA~ETl~iyaPLA~rLGi~~i-k~ELEDL--af~~l~P~~Y~----------~i~~ 334 (635)
++|++ +. +...++++|+.+-.+..+.|....-=-|...| -|+=|.. .+. ..|..-. .. +
T Consensus 2416 r~HdLYKQ~q~L~lqGAs~~~~ral~a~a~e~f~aVp~P~Gce~I~dW~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~-~ 2493 (2710)
T PRK14707 2416 RFHDLYKRTHALALGGASRAEQRTLQAPALEAFKRVASPPGCEEIDDWQEETVPALAG-TPPALASEQTPVNAGASPA-H 2493 (2710)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccCCCCCchhhhhhhhccCcccCcC-CCCccccccccccccccHH-H
Confidence 56665 33 34567788888888889999876655565543 3443321 111 1111111 11 2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhhccccccceeEEEEEe---------cChHHHHHHHHhc---CCC----ccccc
Q 006686 335 RVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVC---------KEPYSIYKAVLKS---RGS----INEVN 398 (635)
Q Consensus 335 ~l~~~r~~~e~~l~~~~~~L~~~L~~~~~l~~~~i~~~V~~R~---------K~~~SI~~Km~rk---~~~----~~~I~ 398 (635)
+|...-...+..+.-+.+.|-+.+... |...+..-.-.||+ |++.||.+|+.+. +.+ +..|.
T Consensus 2494 r~~~~a~~~~~~v~p~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Ks~~Si~RKI~~~~~~~ls~eqAaarVr 2571 (2710)
T PRK14707 2494 RVFNAATGKQASLTPVLNTLADGLGAR--LWGNVRYKASQGRIEQVQQAPFQKSLASIKDKIRRHLRAGMTAEQATQSVG 2571 (2710)
T ss_pred HHHHHhhhcccccChHHHHHHHHhhhh--hcccCccccccchhhhhhhcccCCCHHHHHHHHHHHHhcCCCHHHHHHHhh
Confidence 222211112222222222222222111 11111111234555 9999999999754 233 46788
Q ss_pred ceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhh-cccccccccccccccCCCCCCCcceEEEEeccCCCCceeEEEEE
Q 006686 399 QIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVH-GIWTPIPRAMKDYIATPKPNGYQSLHTTLIPFLYESMFRLEVQI 477 (635)
Q Consensus 399 Di~giRIIv~~~~~~~~~~~~~~~~dcY~vlg~vh-~~~~p~~~~~kDYIa~PK~nGYqSLHt~V~~~~~~~~~~vEIQI 477 (635)
|.+-.=||++. ..|+...+.+...+. ..|+.+ ++|++-..| .+.|..+-+++... .+..||||.
T Consensus 2572 DalRYtviLp~---------e~Fv~~v~~~~~~L~~~G~~~~--rvKNtw~~~-d~tY~GvN~~~r~~---~g~~FEIQF 2636 (2710)
T PRK14707 2572 DALRYALELPS---------EGFVAKVQAAQDALRRQGMTCV--NLQNYFTSG-DGTYRGINASFTDA---EGYAFEVQF 2636 (2710)
T ss_pred hheeEEEEcCc---------chHHHHHHHHHHHHHhcCCeEE--EeeccccCC-CCcccceeeeEEcC---CCCeEEEEe
Confidence 98777777665 358888888888775 457665 788877554 47799999998642 345899999
Q ss_pred echhhHHHHHHHHHhhccCcc
Q 006686 478 RTEEMDLIAERGIAAHYSGRV 498 (635)
Q Consensus 478 RT~~Mh~wAE~G~aah~~yK~ 498 (635)
-|..--..-+. .|-.|+.
T Consensus 2637 HT~~Sf~~K~~---tH~lYek 2654 (2710)
T PRK14707 2637 HTAESFNAKAQ---THLSYKR 2654 (2710)
T ss_pred ccHHHHHHHHH---hHHHHHh
Confidence 99776554443 4545553
No 52
>PRK09169 hypothetical protein; Validated
Probab=82.84 E-value=12 Score=49.36 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=75.7
Q ss_pred EEEEEecChHHHHHHHH----hcCCCc----ccccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhh-ccccccccc
Q 006686 372 EIRSVCKEPYSIYKAVL----KSRGSI----NEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVH-GIWTPIPRA 442 (635)
Q Consensus 372 ~V~~R~K~~~SI~~Km~----rk~~~~----~~I~Di~giRIIv~~~~~~~~~~~~~~~~dcY~vlg~vh-~~~~p~~~~ 442 (635)
....|+|+..|+.+|+. +++.++ ..|+|.+-.=|++++. .|...+..+++.+. ..|..+ +
T Consensus 1915 Gle~RlKS~~SL~rKL~~~~~~~~~s~e~Aaa~VnDALRYtvvLp~~---------~Fva~~r~iv~~L~~~G~~~V--k 1983 (2316)
T PRK09169 1915 GLAHRLKSEGSLFEKLRGLMAKKHLTPEEAAALVNDALRYSVVLPPQ---------TFVAGYRRILGALDEQGHTRT--R 1983 (2316)
T ss_pred chHhhhCCHHHHHHHHHHHHhccCCCHHHHHHhccceeeEEEecCCc---------cHHHHHHHHHHHHHhCCCeEE--E
Confidence 44679999999999987 444454 5788876666665543 57888888888775 456544 4
Q ss_pred ccccccCCCCCCCcceEEEE-eccCCCCceeEEEEEechhhHHHHHHHHHhhccCcc
Q 006686 443 MKDYIATPKPNGYQSLHTTL-IPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRV 498 (635)
Q Consensus 443 ~kDYIa~PK~nGYqSLHt~V-~~~~~~~~~~vEIQIRT~~Mh~wAE~G~aah~~yK~ 498 (635)
++++-.. ..++|..+|+++ .+ .++..+|||.=|..--..-+. .|-.||+
T Consensus 1984 v~N~F~~-~~~~YkGVNv~l~~s---~~g~~fEIQFHT~qSF~lK~r---~H~lYkq 2033 (2316)
T PRK09169 1984 VTNHFKK-RGPAFKGINVTLDAT---GEGVRLEIQFHTPQTFDLKER---FHDLYKQ 2033 (2316)
T ss_pred EEeeecc-CCCCccceEEeeecC---CCCceEEEEecCHHHHHHHHH---hHHHHHH
Confidence 5553322 259999999998 33 346799999999876555543 4556664
No 53
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=81.83 E-value=5.8 Score=43.27 Aligned_cols=58 Identities=24% Similarity=0.231 Sum_probs=35.9
Q ss_pred cchhHHHHHHHHH----hcCCCHHH-HHHHhhccccccCCC------CCHHHHHH-HhChHHHHHHHhhh
Q 006686 171 FIIHPVEVARILG----ELELDWES-IAAGLLHDTVEDTNV------VTFERIEE-EFGATVRRIVEGET 228 (635)
Q Consensus 171 Yi~Hpl~VA~iLa----~l~~D~~t-I~AALLHDvvEDT~~------~T~e~I~~-~FG~~Va~LV~gvT 228 (635)
.+.|.++|+.+.. .++.|.+. ++||||||+-..... ...+-|++ .|.++++.+|+...
T Consensus 188 l~~Hs~rVa~lA~~LA~~~~~D~~ll~aAALLHDIGK~k~~~~~H~~~Ga~iL~e~G~~e~i~~iIe~H~ 257 (339)
T PRK12703 188 LIRHVKTVYKLAMRIADCINADRRLVAAGALLHDIGRTKTNGIDHAVAGAEILRKENIDDRVVSIVERHI 257 (339)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 4689999987643 45677765 678999999542210 01233333 25678888886543
No 54
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=80.51 E-value=0.93 Score=39.14 Aligned_cols=37 Identities=24% Similarity=0.168 Sum_probs=27.7
Q ss_pred CCccchhHHHHHHHHHhcC------CCHHHHHHHhhccccccC
Q 006686 168 GEPFIIHPVEVARILGELE------LDWESIAAGLLHDTVEDT 204 (635)
Q Consensus 168 GePYi~Hpl~VA~iLa~l~------~D~~tI~AALLHDvvEDT 204 (635)
+++.+.|.+.|+.+...+. .......||||||+-...
T Consensus 2 ~~~~~~H~~~v~~~~~~l~~~~~~~~~~~~~~a~LlHDig~~~ 44 (124)
T smart00471 2 DYHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPG 44 (124)
T ss_pred CchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHcccCcc
Confidence 5677899999998876442 234578999999997643
No 55
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.10 E-value=2.8 Score=37.47 Aligned_cols=53 Identities=23% Similarity=0.179 Sum_probs=38.3
Q ss_pred ceeecCCCCcHHHHHHH-----hchhhhcceEEEEECCEecCCCccCCCCCEEEEEec
Q 006686 573 EIKNLPKGATVVDYAYM-----IHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (635)
Q Consensus 573 ~~~~lp~GaT~lD~A~~-----Ih~~lg~~~v~AkVNG~~vdL~~~L~~gd~VEIiT~ 625 (635)
..+.++.|+|+.|.... +-+++.-+..-.=|-|+.+.++.+|++||.|||.-+
T Consensus 19 ~~v~v~egatV~dAi~~Sgll~~~~~idl~~n~~GI~~k~~kl~~~l~dgDRVEIyRP 76 (99)
T COG2914 19 CRVQLQEGATVEDAILASGLLELFPDIDLHENKVGIYSKPVKLDDELHDGDRVEIYRP 76 (99)
T ss_pred EEEEeccCcCHHHHHHhcchhhccccCCccccceeEEccccCccccccCCCEEEEecc
Confidence 36788999999998654 344444322222256889999999999999999654
No 56
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=79.17 E-value=2.6 Score=44.19 Aligned_cols=52 Identities=33% Similarity=0.399 Sum_probs=47.7
Q ss_pred ceeecCCCCcHHHHHHHhchhhhcceEEEEECC-------EecCCCccCCCCCEEEEEe
Q 006686 573 EIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNG-------NLVSPTHVLANAEVVEIIT 624 (635)
Q Consensus 573 ~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG-------~~vdL~~~L~~gd~VEIiT 624 (635)
+.+.+..|+|+.|+--+||..+.....-|-|.| +.|.|.+.+.+.|+|.|+.
T Consensus 305 d~~vlr~g~tve~~C~~iHr~l~~qfkyAlVWGtSakhsPQrvgl~h~~~dEdvvqi~~ 363 (364)
T KOG1486|consen 305 DPLVLRKGSTVEDVCHRIHRTLAAQFKYALVWGTSAKHSPQRVGLGHTLEDEDVVQIVK 363 (364)
T ss_pred CceEEeCCCcHHHHHHHHHHHHHHhhceeeEeccccccCcceeccccccccccceeeec
Confidence 688888999999999999999999999999988 6899999999999999874
No 57
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=75.73 E-value=1.2 Score=39.09 Aligned_cols=32 Identities=34% Similarity=0.327 Sum_probs=23.1
Q ss_pred chhHHHHHHHHHhc----C--CCHH-HHHHHhhcccccc
Q 006686 172 IIHPVEVARILGEL----E--LDWE-SIAAGLLHDTVED 203 (635)
Q Consensus 172 i~Hpl~VA~iLa~l----~--~D~~-tI~AALLHDvvED 203 (635)
+.|.+.|+.+...+ + .+.+ ..+||||||+=.-
T Consensus 2 ~~Hs~~V~~~a~~l~~~~~~~~~~~~l~~aaLlHDiGk~ 40 (122)
T PF01966_consen 2 FEHSLRVAELAERLADRLGLEEDRELLRIAALLHDIGKI 40 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTHH
T ss_pred hhHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCCC
Confidence 57999999887654 3 2333 5799999998644
No 58
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=74.74 E-value=2.9 Score=36.48 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=41.7
Q ss_pred ceeecCCCCcHHHHHHHhchhhhcceEEEEE-----------------CC--EecCCCccCCCCCEEEEE
Q 006686 573 EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-----------------NG--NLVSPTHVLANAEVVEII 623 (635)
Q Consensus 573 ~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkV-----------------NG--~~vdL~~~L~~gd~VEIi 623 (635)
....++.|+|+-+.|..||+++.+..+.|.| .| ++..-+|.+++||++.+.
T Consensus 13 RAWti~~g~tAp~AAG~IHsDfekgFIrAeVi~~~d~i~~g~~~~ak~~Gkir~eGK~Yiv~DGDi~~f~ 82 (83)
T cd04867 13 RAWTIRKGTKAPQAAGVIHTDFEKGFIRAEVMKYEDLVELGSEAAAKEAGKYRQEGKDYVVQDGDIIFFK 82 (83)
T ss_pred EEEEccCCCChHHhcCCcccccccCcEEEEEEcHHHHHHcCCHHHHHHcChhhhhCCceEeeCCeEEEEE
Confidence 4567899999999999999999999999988 22 234457789999998763
No 59
>COG1418 Predicted HD superfamily hydrolase [General function prediction only]
Probab=72.46 E-value=3.7 Score=42.11 Aligned_cols=37 Identities=30% Similarity=0.378 Sum_probs=29.4
Q ss_pred cCCccchhHHHHHHHH----HhcCCCHHH-HHHHhhcccccc
Q 006686 167 SGEPFIIHPVEVARIL----GELELDWES-IAAGLLHDTVED 203 (635)
Q Consensus 167 sGePYi~Hpl~VA~iL----a~l~~D~~t-I~AALLHDvvED 203 (635)
+|..-+.|.++|+.+- .+.|.|.+. ..||||||+.--
T Consensus 33 ~~~~~l~H~~~Va~lA~~Ia~~~g~D~~l~~~aaLLHDIg~~ 74 (222)
T COG1418 33 YGQHVLEHSLRVAYLAYRIAEEEGVDPDLALRAALLHDIGKA 74 (222)
T ss_pred ccchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccc
Confidence 6777789999998765 356889875 789999999743
No 60
>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]
Probab=68.09 E-value=7.2 Score=33.76 Aligned_cols=30 Identities=27% Similarity=0.213 Sum_probs=26.8
Q ss_pred cceEEEEECCEecCCCccCCCCCEEEEEec
Q 006686 596 NKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (635)
Q Consensus 596 ~~~v~AkVNG~~vdL~~~L~~gd~VEIiT~ 625 (635)
..++.+.+|...++++++|++||+|-|+.+
T Consensus 51 ~~~v~~~~~~~~~~~~t~L~dGDeVa~~PP 80 (84)
T COG1977 51 NIVVNAANNEFLVGLDTPLKDGDEVAFFPP 80 (84)
T ss_pred cceEEeeeceeeccccccCCCCCEEEEeCC
Confidence 356888899999999999999999999875
No 61
>COG4341 Predicted HD phosphohydrolase [General function prediction only]
Probab=67.57 E-value=5.2 Score=39.20 Aligned_cols=35 Identities=37% Similarity=0.489 Sum_probs=29.6
Q ss_pred ccCCcc--chhHHHHHHHHHhcCCCHHHHHHHhhccc
Q 006686 166 RSGEPF--IIHPVEVARILGELELDWESIAAGLLHDT 200 (635)
Q Consensus 166 ksGePY--i~Hpl~VA~iLa~l~~D~~tI~AALLHDv 200 (635)
.+|+|. ..|.+.-|.....-|.|.+.|+||||||+
T Consensus 24 y~ge~VTq~eHaLQ~AtlAerdGa~~~lVaaALLHDi 60 (186)
T COG4341 24 YSGEPVTQLEHALQCATLAERDGADTALVAAALLHDI 60 (186)
T ss_pred cccCcchhhhhHHHHhHHHHhcCCcHHHHHHHHHHhH
Confidence 478885 47999998876667899999999999996
No 62
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=65.51 E-value=16 Score=32.45 Aligned_cols=47 Identities=17% Similarity=0.164 Sum_probs=35.2
Q ss_pred CCCcHHHHHHHhchhh---h----------cceEEEEECCEec----CCCccCCCCCEEEEEec
Q 006686 579 KGATVVDYAYMIHTEI---G----------NKMVAAKVNGNLV----SPTHVLANAEVVEIITY 625 (635)
Q Consensus 579 ~GaT~lD~A~~Ih~~l---g----------~~~v~AkVNG~~v----dL~~~L~~gd~VEIiT~ 625 (635)
.|+|+.|+...+.... . +.-+-..|||+.+ .++++|++||.|.|+.+
T Consensus 27 ~~~tV~dll~~L~~~~~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~ 90 (94)
T cd01764 27 KPVTVGDLLDYVASNLLEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFIST 90 (94)
T ss_pred CCCcHHHHHHHHHHhCchhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECC
Confidence 5789998877774332 1 1146788999886 57899999999999864
No 63
>COG2316 Predicted hydrolase (HD superfamily) [General function prediction only]
Probab=64.74 E-value=8.1 Score=38.04 Aligned_cols=59 Identities=25% Similarity=0.349 Sum_probs=38.3
Q ss_pred CccchhHHHHHHHH----HhcCCCHHH-HHHHhhcccc--------ccCCCCCHHHHHH-HhChHHHHHHHhh
Q 006686 169 EPFIIHPVEVARIL----GELELDWES-IAAGLLHDTV--------EDTNVVTFERIEE-EFGATVRRIVEGE 227 (635)
Q Consensus 169 ePYi~Hpl~VA~iL----a~l~~D~~t-I~AALLHDvv--------EDT~~~T~e~I~~-~FG~~Va~LV~gv 227 (635)
+..+-|+++|+..+ .++|-|++. -.+|||||.= |..+..+.+-+++ ...++|++.|.+-
T Consensus 46 e~L~kHcla~eavMr~lARe~gEDEEkw~~~GlLHD~DYe~tqgdpEeHgl~g~eiL~~edv~eeil~ai~~H 118 (212)
T COG2316 46 ESLQKHCLAVEAVMRWLAREWGEDEEKWAVTGLLHDFDYELTQGDPEEHGLWGVEILREEDVSEEILDAIMGH 118 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhhhccHHhhcCChhhcCccceehHhhcCCCHHHHHHHHHh
Confidence 44678999876655 368989886 6789999972 1111123344443 3778888887764
No 64
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif
Probab=64.58 E-value=3.8 Score=35.89 Aligned_cols=35 Identities=26% Similarity=0.122 Sum_probs=25.0
Q ss_pred ccchhHHHHHHHHHhcCC--------CHHHHHHHhhccccccC
Q 006686 170 PFIIHPVEVARILGELEL--------DWESIAAGLLHDTVEDT 204 (635)
Q Consensus 170 PYi~Hpl~VA~iLa~l~~--------D~~tI~AALLHDvvEDT 204 (635)
+.+.|.+.|+.+...+.. .....+||||||+-+..
T Consensus 2 ~~~~Hs~~v~~~~~~~~~~~~~~~~~~~~l~~aaLlHDig~~~ 44 (145)
T cd00077 2 HRFEHSLRVAQLARRLAEELGLSEEDIELLRLAALLHDIGKPG 44 (145)
T ss_pred chHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhcCCcc
Confidence 456899999888754421 23568999999998753
No 65
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.
Probab=62.38 E-value=12 Score=38.60 Aligned_cols=50 Identities=24% Similarity=0.123 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHhhcCCccccCCccchhHHHHHHHH---Hh-----cCCCHHH-HHHHhhcccc
Q 006686 145 ELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARIL---GE-----LELDWES-IAAGLLHDTV 201 (635)
Q Consensus 145 ~~~~v~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iL---a~-----l~~D~~t-I~AALLHDvv 201 (635)
|..++++|.+++.+.+.. .-+.|.++|...- +. ++.|.+. .+||||||+.
T Consensus 37 dt~l~~~a~~~~~~~l~~-------~~~~Hs~RV~~~a~~ia~~e~~~~~~D~evl~lAALLHDIG 95 (228)
T TIGR03401 37 DTPLVKFAQEYAKARLPP-------ETYNHSLRVYYYGLAIARDQFPEWDLSDETWFLTCLLHDIG 95 (228)
T ss_pred ChHHHHHHHHHHHhhCCH-------hhhHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhc
Confidence 667788999998776542 3468999986443 21 3677765 6899999986
No 66
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=60.27 E-value=5.6 Score=41.99 Aligned_cols=61 Identities=33% Similarity=0.475 Sum_probs=46.7
Q ss_pred CceeeC-CCCc------eeecC-CCCcHHHHHHHhchhhhcceEEEEE-------CCEecCCCccCCCCCEEEEEe
Q 006686 564 RVFVFT-PRGE------IKNLP-KGATVVDYAYMIHTEIGNKMVAAKV-------NGNLVSPTHVLANAEVVEIIT 624 (635)
Q Consensus 564 ~v~V~t-PdG~------~~~lp-~GaT~lD~A~~Ih~~lg~~~v~AkV-------NG~~vdL~~~L~~gd~VEIiT 624 (635)
-+.+|+ |+|. +..|. .-.|+.||.-.||.++-+...-|.| |.+.|.+++.|.+.|+|.|+.
T Consensus 282 LvriYtkPKgq~PDy~~pVvLs~~~~sv~dfc~~ih~~~~~~fk~alvwg~s~kh~pq~vg~~h~l~dedvv~ivk 357 (358)
T KOG1487|consen 282 LVRIYTKPKGQPPDYTSPVVLSSERRSVEDFCNKIHKSILKQFKYALVWGSSVKHNPQRVGKEHVLEDEDVVQIVK 357 (358)
T ss_pred heEEecCCCCCCCCCCCCceecCCcccHHHHHHHHHHHHHHhhhhheEeccccCcChhhcchhheeccchhhhhcc
Confidence 455666 6664 34443 3568999999999999888666665 557889999999999999874
No 67
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=59.62 E-value=27 Score=28.45 Aligned_cols=50 Identities=12% Similarity=0.050 Sum_probs=42.2
Q ss_pred CCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCCCccCCCCCEEEEEe
Q 006686 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIIT 624 (635)
Q Consensus 571 dG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL~~~L~~gd~VEIiT 624 (635)
+|+.++...++|+-++...+.+ .+--.-+||=...-+..|++||.|-+|.
T Consensus 6 N~k~~~~~~~~tl~~lr~~~k~----~~DI~I~NGF~~~~d~~L~e~D~v~~Ik 55 (57)
T PF14453_consen 6 NEKEIETEENTTLFELRKESKP----DADIVILNGFPTKEDIELKEGDEVFLIK 55 (57)
T ss_pred CCEEEEcCCCcCHHHHHHhhCC----CCCEEEEcCcccCCccccCCCCEEEEEe
Confidence 6789999999999988877665 3435578999999999999999998875
No 68
>PRK10119 putative hydrolase; Provisional
Probab=59.44 E-value=20 Score=37.03 Aligned_cols=52 Identities=19% Similarity=0.118 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhcCCccccCCccchhHHHHHHHHH----hcCCCHH-HHHHHhhccccc
Q 006686 148 LVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILG----ELELDWE-SIAAGLLHDTVE 202 (635)
Q Consensus 148 ~v~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa----~l~~D~~-tI~AALLHDvvE 202 (635)
.+.++..|..+...+. .+|-. +.|..+|...-. .-+.|.+ +.+||||||+..
T Consensus 6 ~~~~~~~~v~~~l~~~--~~~HD-~~Hi~RV~~lA~~Ia~~e~~D~~vv~lAAlLHDv~d 62 (231)
T PRK10119 6 WQAQFENWLKNHHQHQ--DAAHD-ICHFRRVWATAQKLAADDDVDMLVVLTACYFHDIVS 62 (231)
T ss_pred HHHHHHHHHHHHhhcC--CCccC-hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcch
Confidence 3455666766654442 33433 378888764432 3356765 478999999974
No 69
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=59.09 E-value=21 Score=29.22 Aligned_cols=59 Identities=14% Similarity=0.265 Sum_probs=43.2
Q ss_pred ceeeCCCCceeec--CCCCcHHHHHHHhchhhh--c-ceEEEEECCEecCCCcc-----CCCCCEEEEE
Q 006686 565 VFVFTPRGEIKNL--PKGATVVDYAYMIHTEIG--N-KMVAAKVNGNLVSPTHV-----LANAEVVEII 623 (635)
Q Consensus 565 v~V~tPdG~~~~l--p~GaT~lD~A~~Ih~~lg--~-~~v~AkVNG~~vdL~~~-----L~~gd~VEIi 623 (635)
|+|..++|+.+.+ ....|+..+...+....+ . ..+--..||+..+.+.. +++||.|+++
T Consensus 3 i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 3 IKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 6678888876665 677888888776655444 4 45888999999888764 6999999985
No 70
>PRK13480 3'-5' exoribonuclease YhaM; Provisional
Probab=57.24 E-value=30 Score=37.45 Aligned_cols=74 Identities=24% Similarity=0.306 Sum_probs=45.1
Q ss_pred CCChHHHHHhhhhhhcCCChhhHHHHHHHHH------H-----HHHhhcCCccccCCccchhHHHHHHHHHhc-----CC
Q 006686 124 EDSPERLWEDLRPTISYLSPNELELVRRALM------L-----AFEAHDGQKRRSGEPFIIHPVEVARILGEL-----EL 187 (635)
Q Consensus 124 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~A~~------~-----A~~aH~gQ~RksGePYi~Hpl~VA~iLa~l-----~~ 187 (635)
..+++++++.+...+.......+..+.+++- | |...|.. + .+| .+.|-+.|+.+...+ .+
T Consensus 106 ~~~~e~l~~el~~~i~~i~~~~l~~l~~~~~~~~~~~f~~~PAa~~~HHa-y-~GG--LleHtl~v~~~~~~l~~~y~~~ 181 (314)
T PRK13480 106 PLSKEEMQEEITQYIFEMENPNIQRITRHLLKKYQEEFLDYPAATKNHHE-F-VSG--LAYHVVSMLRLAKSICDLYPSL 181 (314)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCChHhhcccc-c-ccH--HHHHHHHHHHHHHHHHHhcccc
Confidence 3467889999887765555555555444432 0 1111111 1 112 368999999887654 46
Q ss_pred CHH-HHHHHhhcccc
Q 006686 188 DWE-SIAAGLLHDTV 201 (635)
Q Consensus 188 D~~-tI~AALLHDvv 201 (635)
|.+ .+++|||||+=
T Consensus 182 n~dll~agalLHDiG 196 (314)
T PRK13480 182 NKDLLYAGIILHDLG 196 (314)
T ss_pred CHHHHHHHHHHHHhh
Confidence 777 48889999974
No 71
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=53.35 E-value=15 Score=29.86 Aligned_cols=33 Identities=39% Similarity=0.534 Sum_probs=22.9
Q ss_pred ccchhHHHHHHHHH----hcCCCHH-HHHHHhhccccc
Q 006686 170 PFIIHPVEVARILG----ELELDWE-SIAAGLLHDTVE 202 (635)
Q Consensus 170 PYi~Hpl~VA~iLa----~l~~D~~-tI~AALLHDvvE 202 (635)
+-..|.+.|+.... .+++|.+ ...||||||+=.
T Consensus 4 ~~~~H~~~v~~~a~~la~~~~~~~~~l~~AalLHDiG~ 41 (80)
T TIGR00277 4 NVLQHSLEVAKLAEALARELGLDVELARRGALLHDIGK 41 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHccCC
Confidence 34578888877654 3466664 577999999743
No 72
>COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]
Probab=51.97 E-value=13 Score=37.21 Aligned_cols=36 Identities=33% Similarity=0.328 Sum_probs=27.3
Q ss_pred ccchhHHHHHHHHHh----cCCCHH-HHHHHhhccccccCC
Q 006686 170 PFIIHPVEVARILGE----LELDWE-SIAAGLLHDTVEDTN 205 (635)
Q Consensus 170 PYi~Hpl~VA~iLa~----l~~D~~-tI~AALLHDvvEDT~ 205 (635)
+=+.|.++||..-.+ +++|.+ .-+||+|||.--+-+
T Consensus 17 kR~~H~l~V~~~A~~LA~~y~~d~~kA~~AgilHD~aK~~p 57 (187)
T COG1713 17 KRFEHCLGVAETAIELAEAYGLDPEKAYLAGILHDIAKELP 57 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCC
Confidence 347999999877543 477865 578999999986654
No 73
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=50.07 E-value=32 Score=36.94 Aligned_cols=57 Identities=16% Similarity=0.211 Sum_probs=39.9
Q ss_pred CceeeCCCCceeec-CCCCcHHHHHHHhc---------hhhh----cceEEEEECCEe--c-CCCccCCCCCEEE
Q 006686 564 RVFVFTPRGEIKNL-PKGATVVDYAYMIH---------TEIG----NKMVAAKVNGNL--V-SPTHVLANAEVVE 621 (635)
Q Consensus 564 ~v~V~tPdG~~~~l-p~GaT~lD~A~~Ih---------~~lg----~~~v~AkVNG~~--v-dL~~~L~~gd~VE 621 (635)
++.|+. ||..+++ |+|.|++|+|.+.+ +++. -++..+.|+|+. + .=.+++++|.+|+
T Consensus 68 ~~~I~I-DGk~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~V~ 141 (297)
T PTZ00305 68 RAIMFV-NKRPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMSII 141 (297)
T ss_pred ceEEEE-CCEEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCEEE
Confidence 344443 9999999 99999999999863 3332 124567788863 2 2266889998876
No 74
>TIGR00488 putative HD superfamily hydrolase of NAD metabolism. The function of this protein family is unknown. Members of this family of uncharacterized proteins from the Mycoplasmas are longer at the amino end, fused to a region of nicotinamide nucleotide adenylyltransferase, an NAD salvage biosynthesis enzyme. Members are putative metal-dependent phosphohydrolases for NAD metabolism.
Probab=49.81 E-value=14 Score=35.44 Aligned_cols=32 Identities=25% Similarity=0.226 Sum_probs=23.6
Q ss_pred cchhHHHHHHHHH----hcCCCHH-HHHHHhhccccc
Q 006686 171 FIIHPVEVARILG----ELELDWE-SIAAGLLHDTVE 202 (635)
Q Consensus 171 Yi~Hpl~VA~iLa----~l~~D~~-tI~AALLHDvvE 202 (635)
-+.|.+.||.+.. .++.|.+ .-+||||||+=.
T Consensus 9 r~~Hsl~Va~~a~~lA~~~~~d~e~a~~AGLLHDIGk 45 (158)
T TIGR00488 9 RYQHCLGVGQTAKQLAEANKLDSKKAEIAGAYHDLAK 45 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhc
Confidence 3689999987653 3466654 588999999864
No 75
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=49.69 E-value=21 Score=28.55 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.0
Q ss_pred EEEECCEec-CCCccCCCCCEEEE
Q 006686 600 AAKVNGNLV-SPTHVLANAEVVEI 622 (635)
Q Consensus 600 ~AkVNG~~v-dL~~~L~~gd~VEI 622 (635)
...|||+.+ ..++.|+.||.|+|
T Consensus 35 ~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 35 EVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred CEEECCEEccCCCCCCCCCCEEEe
Confidence 477899998 77999999999986
No 76
>smart00363 S4 S4 RNA-binding domain.
Probab=48.40 E-value=18 Score=27.24 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=21.0
Q ss_pred EEEECCEec-CCCccCCCCCEEEEE
Q 006686 600 AAKVNGNLV-SPTHVLANAEVVEII 623 (635)
Q Consensus 600 ~AkVNG~~v-dL~~~L~~gd~VEIi 623 (635)
+..|||+.+ +.++++..||.|++-
T Consensus 27 ~i~vng~~~~~~~~~l~~gd~i~~~ 51 (60)
T smart00363 27 RVKVNGKKVTKPSYIVKPGDVISVR 51 (60)
T ss_pred CEEECCEEecCCCeEeCCCCEEEEc
Confidence 577999999 899999999998764
No 77
>TIGR00295 conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters.
Probab=47.84 E-value=19 Score=34.99 Aligned_cols=57 Identities=26% Similarity=0.335 Sum_probs=33.9
Q ss_pred CccchhHHHHHHHHH----hcC-----CCHH-HHHHHhhccccccCC------CCCHHHHHHH--hChHHHHHHHh
Q 006686 169 EPFIIHPVEVARILG----ELE-----LDWE-SIAAGLLHDTVEDTN------VVTFERIEEE--FGATVRRIVEG 226 (635)
Q Consensus 169 ePYi~Hpl~VA~iLa----~l~-----~D~~-tI~AALLHDvvEDT~------~~T~e~I~~~--FG~~Va~LV~g 226 (635)
+..+.|.+.|+.+.. .++ .|.+ ..+||||||+-.... .... ++.+. |.++++.+|..
T Consensus 12 ~~~~~Hs~~Va~~A~~ia~~~~~~~~~~d~~~l~~aaLLHDIGK~~~~~~~H~~~G~-~iL~~~g~~~~i~~iI~~ 86 (164)
T TIGR00295 12 ESVRRHCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGRARTHGFEHFVKGA-EILRKEGVDEKIVRIAER 86 (164)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCcccCCCCCHHHHHH-HHHHHcCCCHHHHHHHHH
Confidence 445689999987642 344 4544 588999999854211 0111 23333 55678887754
No 78
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=46.93 E-value=13 Score=31.99 Aligned_cols=52 Identities=21% Similarity=0.377 Sum_probs=33.3
Q ss_pred CCCceeecCCCCcHHHHHHHhchhhh----c-------------ceEEEEECCEe-cCC-CccCCCCCEEE
Q 006686 570 PRGEIKNLPKGATVVDYAYMIHTEIG----N-------------KMVAAKVNGNL-VSP-THVLANAEVVE 621 (635)
Q Consensus 570 PdG~~~~lp~GaT~lD~A~~Ih~~lg----~-------------~~v~AkVNG~~-vdL-~~~L~~gd~VE 621 (635)
=||+.++.++|.|+++++.+.+-.+- . ...-+.|||+. +.- .+++++|..|+
T Consensus 8 idG~~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~g~~~v~AC~t~v~~GM~V~ 78 (82)
T PF13510_consen 8 IDGKPVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVDGEPNVRACSTPVEDGMVVE 78 (82)
T ss_dssp ETTEEEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEESSEEEEETTT-B--TTEEEE
T ss_pred ECCEEEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEECCCcceEcccCCCcCCcEEE
Confidence 48999999999999999998643321 1 13568899987 422 45888888775
No 79
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=46.81 E-value=22 Score=36.12 Aligned_cols=50 Identities=22% Similarity=0.283 Sum_probs=35.0
Q ss_pred eecCCCCcHHHHHHHhc----hhhhcc---------eEEEEECCEec-CCCccCCC-CC---EEEEEe
Q 006686 575 KNLPKGATVVDYAYMIH----TEIGNK---------MVAAKVNGNLV-SPTHVLAN-AE---VVEIIT 624 (635)
Q Consensus 575 ~~lp~GaT~lD~A~~Ih----~~lg~~---------~v~AkVNG~~v-dL~~~L~~-gd---~VEIiT 624 (635)
++++.|.|++|++..|+ +.++-. ..+++|||+.+ .-.+++.+ |. +||.+.
T Consensus 19 v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~vnG~~~laC~t~v~~~g~~~~~iepl~ 86 (220)
T TIGR00384 19 VPADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNVNGKPVLACKTKVEDLGQPVMKIEPLP 86 (220)
T ss_pred EeCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEECCEEhhhhhChHHHcCCCcEEEeeCC
Confidence 44568999999999886 333322 34789999876 56778887 76 455543
No 80
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=45.93 E-value=84 Score=25.31 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=42.1
Q ss_pred CceeeCCCCc--eeecCCCCcHHHHHHHhchhhhcc--eEEEEECCEecCCCc-----cCCCCCEEEEEe
Q 006686 564 RVFVFTPRGE--IKNLPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTH-----VLANAEVVEIIT 624 (635)
Q Consensus 564 ~v~V~tPdG~--~~~lp~GaT~lD~A~~Ih~~lg~~--~v~AkVNG~~vdL~~-----~L~~gd~VEIiT 624 (635)
.|+|.+++|+ .++++...|+.++-..|+...|-. ..--..+|+..+-+. -+++|++|.++.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 2 EIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 3678889887 456678899999999987665432 223345787666544 367888887753
No 81
>COG1078 HD superfamily phosphohydrolases [General function prediction only]
Probab=45.40 E-value=11 Score=42.48 Aligned_cols=50 Identities=28% Similarity=0.314 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHhh----cCCccccCCccchhHHHHHHHHHhc----C--CCH--------HHHHHHhhccc
Q 006686 145 ELELVRRALMLAFEAH----DGQKRRSGEPFIIHPVEVARILGEL----E--LDW--------ESIAAGLLHDT 200 (635)
Q Consensus 145 ~~~~v~~A~~~A~~aH----~gQ~RksGePYi~Hpl~VA~iLa~l----~--~D~--------~tI~AALLHDv 200 (635)
+.++++.-.++....+ +.-+| +.|.+.|..+...+ + .+. .+.+||||||+
T Consensus 28 ~FQRLRrIkQLG~a~lvyPgAnHTR------FeHSLGV~~la~~~~~~l~~~~~~~~~~~~~~~~~~AALLHDI 95 (421)
T COG1078 28 EFQRLRRIKQLGLAYLVYPGANHTR------FEHSLGVYHLARRLLEHLEKNSEEEIDEEERLLVRLAALLHDI 95 (421)
T ss_pred HHHHHHHhhhccceeEecCCCcccc------cchhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHcc
Confidence 5566666555554421 12233 69999998776432 2 111 37899999997
No 82
>PRK00106 hypothetical protein; Provisional
Probab=45.16 E-value=19 Score=41.65 Aligned_cols=35 Identities=37% Similarity=0.553 Sum_probs=27.2
Q ss_pred CCccchhHHHHHHHH----HhcCCCH-HHHHHHhhccccc
Q 006686 168 GEPFIIHPVEVARIL----GELELDW-ESIAAGLLHDTVE 202 (635)
Q Consensus 168 GePYi~Hpl~VA~iL----a~l~~D~-~tI~AALLHDvvE 202 (635)
|...+.|.++||.+. ..+|+|. ..-.||||||+=.
T Consensus 348 ~qnl~~HSv~VA~lA~~lA~~lgld~e~a~~AGLLHDIGK 387 (535)
T PRK00106 348 GQNVLRHSVEVGKLAGILAGELGENVALARRAGFLHDMGK 387 (535)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccC
Confidence 566789999998865 4678885 4588999999843
No 83
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=44.20 E-value=67 Score=26.18 Aligned_cols=62 Identities=13% Similarity=0.072 Sum_probs=43.4
Q ss_pred CceeeCCCCce--eecCCCCcHHHHHHHhchhhhcce--EEEEECCEecCCC-----ccCCCCCEEEEEec
Q 006686 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGNKM--VAAKVNGNLVSPT-----HVLANAEVVEIITY 625 (635)
Q Consensus 564 ~v~V~tPdG~~--~~lp~GaT~lD~A~~Ih~~lg~~~--v~AkVNG~~vdL~-----~~L~~gd~VEIiT~ 625 (635)
.|+|.+.+|+. ++++...|+.++-..|....|-.+ .--..+|+..+-+ +.+++|++|.++-.
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~ 72 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLA 72 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEE
Confidence 36788888876 456788999999999877655332 2333577765433 35789999988753
No 84
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=43.78 E-value=20 Score=27.16 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=18.7
Q ss_pred EEEECCEecC-CCccCCCCCEE
Q 006686 600 AAKVNGNLVS-PTHVLANAEVV 620 (635)
Q Consensus 600 ~AkVNG~~vd-L~~~L~~gd~V 620 (635)
..+|||+.+. .+++++.||+|
T Consensus 27 ~V~VNg~~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 27 RVKVNGKVVKDPSYIVKPGDVI 48 (48)
T ss_dssp TEEETTEEESSTTSBESTTEEE
T ss_pred EEEECCEEEcCCCCCCCCcCCC
Confidence 4789999998 99999999986
No 85
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=41.04 E-value=21 Score=39.51 Aligned_cols=61 Identities=25% Similarity=0.239 Sum_probs=47.1
Q ss_pred CceeeCC--C-CceeecCCCCcHHHHHHHhchhhhcceEEEEEC-----------------C--EecCCCccCCCCCEEE
Q 006686 564 RVFVFTP--R-GEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVN-----------------G--NLVSPTHVLANAEVVE 621 (635)
Q Consensus 564 ~v~V~tP--d-G~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVN-----------------G--~~vdL~~~L~~gd~VE 621 (635)
-++.||- + =+...++.|+|+.+.|..||+++.+..+.|.|= | ++-.-+|.+++||++.
T Consensus 284 L~sFfT~g~~EvRaWti~~G~~Ap~AAG~IHsDfekgFIrAEV~~yddl~~~gs~~~~k~~Gk~r~eGK~YivqDGDIi~ 363 (368)
T TIGR00092 284 LSFFFTGGKEEVRAWTRKGGWAAPQAAGIIHTDFETGFIAAEVISWDDFIYKKSSQGAKKGGLMRLEGKYYVVDDGDVLF 363 (368)
T ss_pred eeEEEcCCCceeEEeecCCCCchhHhcCCcccccccCceEEEEecHHHHHHcCCHHHHHhcCchhhcCCeEEeeCCeEEE
Confidence 4455553 2 246788999999999999999999999999881 2 2445578899999998
Q ss_pred EEe
Q 006686 622 IIT 624 (635)
Q Consensus 622 IiT 624 (635)
|-.
T Consensus 364 f~f 366 (368)
T TIGR00092 364 FAF 366 (368)
T ss_pred Eec
Confidence 743
No 86
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=41.04 E-value=1e+02 Score=22.16 Aligned_cols=58 Identities=21% Similarity=0.332 Sum_probs=38.6
Q ss_pred eeCCCCce--eecCCCCcHHHHHHHhchhhh--cceEEEEECCEecCCCc-----cCCCCCEEEEEe
Q 006686 567 VFTPRGEI--KNLPKGATVVDYAYMIHTEIG--NKMVAAKVNGNLVSPTH-----VLANAEVVEIIT 624 (635)
Q Consensus 567 V~tPdG~~--~~lp~GaT~lD~A~~Ih~~lg--~~~v~AkVNG~~vdL~~-----~L~~gd~VEIiT 624 (635)
|..++|.. +.++.+.|+.|+-..|....| .....-.+||...+... .+.+|+.|.++.
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 34445554 444568999999888876653 33456667887665443 678888888764
No 87
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=37.63 E-value=57 Score=33.48 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=39.2
Q ss_pred CCCceeecCCCCcHHHHHHHhchhhhc-------------ceEEEEECCEe--c-CCCccCCCCCEEEEE
Q 006686 570 PRGEIKNLPKGATVVDYAYMIHTEIGN-------------KMVAAKVNGNL--V-SPTHVLANAEVVEII 623 (635)
Q Consensus 570 PdG~~~~lp~GaT~lD~A~~Ih~~lg~-------------~~v~AkVNG~~--v-dL~~~L~~gd~VEIi 623 (635)
-||..+++++|.|++|+|.+.+-.+.. ....++|||+. + .=.+++++|..|+--
T Consensus 8 idg~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~g~~~~~~aC~t~v~~Gm~v~t~ 77 (234)
T PRK07569 8 IDDQLVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEIEGSNKLLPACVTPVAEGMVVQTN 77 (234)
T ss_pred ECCEEEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEECCCCccccCcCCCCCCCCEEEEC
Confidence 499999999999999999886544422 12457889853 2 446788988887643
No 88
>PRK12704 phosphodiesterase; Provisional
Probab=36.83 E-value=34 Score=39.54 Aligned_cols=34 Identities=44% Similarity=0.650 Sum_probs=25.4
Q ss_pred CCccchhHHHHHHHH----HhcCCCHH-HHHHHhhcccc
Q 006686 168 GEPFIIHPVEVARIL----GELELDWE-SIAAGLLHDTV 201 (635)
Q Consensus 168 GePYi~Hpl~VA~iL----a~l~~D~~-tI~AALLHDvv 201 (635)
|...+.|.++||.+. ..+|+|.+ ...||||||+=
T Consensus 333 ~qn~l~Hs~~Va~lA~~lA~~lgld~~~a~~AgLLHDIG 371 (520)
T PRK12704 333 GQNVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIG 371 (520)
T ss_pred CCcHhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHccC
Confidence 444678999998765 35688765 47899999974
No 89
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=36.17 E-value=40 Score=26.08 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=21.4
Q ss_pred EEEECCEec-CCCccCCCCCEEEEEe
Q 006686 600 AAKVNGNLV-SPTHVLANAEVVEIIT 624 (635)
Q Consensus 600 ~AkVNG~~v-dL~~~L~~gd~VEIiT 624 (635)
+.+|||+.+ ..++++..||.|.+.-
T Consensus 27 ~V~vn~~~~~~~~~~v~~~d~i~i~~ 52 (70)
T cd00165 27 HVLVNGKVVTKPSYKVKPGDVIEVDG 52 (70)
T ss_pred CEEECCEEccCCccCcCCCCEEEEcC
Confidence 577999998 8899999999988754
No 90
>PRK12705 hypothetical protein; Provisional
Probab=34.12 E-value=35 Score=39.36 Aligned_cols=35 Identities=40% Similarity=0.586 Sum_probs=26.8
Q ss_pred CCccchhHHHHHHHH----HhcCCCHH-HHHHHhhccccc
Q 006686 168 GEPFIIHPVEVARIL----GELELDWE-SIAAGLLHDTVE 202 (635)
Q Consensus 168 GePYi~Hpl~VA~iL----a~l~~D~~-tI~AALLHDvvE 202 (635)
|...+.|.++||.+. ..+|+|++ ...||||||+=.
T Consensus 321 gqnvl~HSl~VA~lA~~LA~~lGld~d~a~~AGLLHDIGK 360 (508)
T PRK12705 321 GQNVLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIGK 360 (508)
T ss_pred CchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHcCC
Confidence 455678999998865 35688765 478999999854
No 91
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=33.19 E-value=20 Score=36.68 Aligned_cols=99 Identities=19% Similarity=0.260 Sum_probs=49.4
Q ss_pred cchhHHHHHHHHH---h----cC--CCHHH-HHHHhhccccccCCCCCHHHHH---HHhChHHHHHHHhhhccccccccc
Q 006686 171 FIIHPVEVARILG---E----LE--LDWES-IAAGLLHDTVEDTNVVTFERIE---EEFGATVRRIVEGETKVSKLGKLK 237 (635)
Q Consensus 171 Yi~Hpl~VA~iLa---~----l~--~D~~t-I~AALLHDvvEDT~~~T~e~I~---~~FG~~Va~LV~gvTkv~~l~~~~ 237 (635)
--.|...||.+.. . .| .|+.. ...||.||..|-.- .||. +.+.|+...++..|.+.-.-.-+.
T Consensus 30 VA~HSf~Va~iA~~Lg~iee~~G~~vd~~~lyekAL~HD~~E~Ft----GDI~TPVKy~tPelr~~~~~VE~~m~~~~i~ 105 (215)
T PF12917_consen 30 VAEHSFKVAMIAQFLGDIEEQFGNEVDWKELYEKALNHDYPEIFT----GDIKTPVKYATPELREMLAQVEEEMTENFIK 105 (215)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHTTGGGGTS--------S-SSSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccCHHHHHHHHhccccHHHHc----CCCCCcccccCHHHHHHHHHHHHHHHHHHHH
Confidence 3478888876652 2 23 46644 58899999998532 2332 235566666655554421100000
Q ss_pred cccCCchhhhhhHHHHHHHHHhccCC-ceEEeeehhhhHhhh
Q 006686 238 CKNENHSVQDVKADDLRQMFLAMTEE-VRVIIVKLADRLHNM 278 (635)
Q Consensus 238 ~~~~~~~~~~~qae~lRkmLlam~~D-iRvvLVKLADRLhNm 278 (635)
. . ....-.+.+|.++..--+| +-..+||.||.++-+
T Consensus 106 ~-~----iP~e~q~~Y~~~l~E~KDdt~EG~Iv~~ADkidal 142 (215)
T PF12917_consen 106 K-E----IPEEFQEAYRRRLKEGKDDTLEGQIVKAADKIDAL 142 (215)
T ss_dssp H-H----S-GGGHHHHHHHHS---SSSHHHHHHHHHHHHHHH
T ss_pred h-h----CCHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHH
Confidence 0 0 0111234566655543322 667789999999876
No 92
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=33.00 E-value=37 Score=39.16 Aligned_cols=31 Identities=42% Similarity=0.561 Sum_probs=24.3
Q ss_pred cchhHHHHHHHH----HhcCCCHH-HHHHHhhcccc
Q 006686 171 FIIHPVEVARIL----GELELDWE-SIAAGLLHDTV 201 (635)
Q Consensus 171 Yi~Hpl~VA~iL----a~l~~D~~-tI~AALLHDvv 201 (635)
.+.|.++||.+. ..+|+|.+ ...||||||+=
T Consensus 330 ~l~Hs~~VA~lA~~LA~~lgld~~~a~~AGLLHDIG 365 (514)
T TIGR03319 330 VLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIG 365 (514)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHhcC
Confidence 578999998875 35788875 46799999984
No 93
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=32.11 E-value=1.7e+02 Score=32.72 Aligned_cols=100 Identities=19% Similarity=0.181 Sum_probs=56.3
Q ss_pred ccccccceeecccCCCCCCCCCCCChHHHHHhhhhhhcCCCh-hhHHHHHHH--H-----HHHHHhhcCCcccc-C-Ccc
Q 006686 102 LHVACKRWRLCLSPSVSSDAFKEDSPERLWEDLRPTISYLSP-NELELVRRA--L-----MLAFEAHDGQKRRS-G-EPF 171 (635)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~A--~-----~~A~~aH~gQ~Rks-G-ePY 171 (635)
+......|+++.... .++....+++|..|+++...+..-.+ .-+..+.+. + +++.-..--|...- - .+-
T Consensus 150 f~i~~~T~~~i~~~~-~~~~L~~~~~ERi~~El~kiL~~~~p~~~l~~L~~~g~L~~l~PEl~~l~~~~Q~~~~H~e~dv 228 (409)
T PRK10885 150 FRIAPETLALMREMV-ASGELDALTPERVWKETERALMERNPQVFFQVLRDCGALAVLLPEIDALFGVPQPAKWHPEIDT 228 (409)
T ss_pred CCcCHHHHHHHHHhh-hhchhhhCCHHHHHHHHHHHHcCCCHHHHHHHHHHhhHHHHHhhHHHHHhcCCCCcCCCCCCcH
Confidence 444555555554322 12235557899999999876654333 223333332 1 11111122232221 1 234
Q ss_pred chhHHHHHHHHHhcCCCHHHHHHHhhccccc
Q 006686 172 IIHPVEVARILGELELDWESIAAGLLHDTVE 202 (635)
Q Consensus 172 i~Hpl~VA~iLa~l~~D~~tI~AALLHDvvE 202 (635)
..|-+.|...+..+..+.....||||||+=.
T Consensus 229 ~~Htl~~l~~~~~l~~~l~lr~AaLlHDlGK 259 (409)
T PRK10885 229 GIHTLMVLDQAAKLSPSLDVRFAALCHDLGK 259 (409)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHhccccC
Confidence 5798888888877766777888999999843
No 94
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=31.93 E-value=1.8e+02 Score=24.98 Aligned_cols=61 Identities=10% Similarity=0.153 Sum_probs=44.6
Q ss_pred CceeeCCCCcee--ecCCCCcHHHHHHHhchhhh--cceEEEEECCEecCCCc-----cCCCCCEEEEEe
Q 006686 564 RVFVFTPRGEIK--NLPKGATVVDYAYMIHTEIG--NKMVAAKVNGNLVSPTH-----VLANAEVVEIIT 624 (635)
Q Consensus 564 ~v~V~tPdG~~~--~lp~GaT~lD~A~~Ih~~lg--~~~v~AkVNG~~vdL~~-----~L~~gd~VEIiT 624 (635)
.|+|.+++|+.+ .+....|+..+..++....| ..-+--..||+.+..+. -+++||+|+++.
T Consensus 13 ~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l 82 (87)
T cd01763 13 NLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVML 82 (87)
T ss_pred EEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEE
Confidence 467888999864 45667789888777765544 34456666898887655 479999999875
No 95
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=31.25 E-value=1.1e+02 Score=25.87 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=21.9
Q ss_pred ceeeCCCCc--eeecCCCCcHHHHHHHh
Q 006686 565 VFVFTPRGE--IKNLPKGATVVDYAYMI 590 (635)
Q Consensus 565 v~V~tPdG~--~~~lp~GaT~lD~A~~I 590 (635)
+.|++|||+ ...+..|.|+.|+...+
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~ 29 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKA 29 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHH
Confidence 578999995 67778999999998776
No 96
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=30.80 E-value=35 Score=37.00 Aligned_cols=34 Identities=32% Similarity=0.349 Sum_probs=25.2
Q ss_pred CccchhHHHHHHHHH----hcCCCH-HHHHHHhhccccc
Q 006686 169 EPFIIHPVEVARILG----ELELDW-ESIAAGLLHDTVE 202 (635)
Q Consensus 169 ePYi~Hpl~VA~iLa----~l~~D~-~tI~AALLHDvvE 202 (635)
++...|.+.||.+.. .+|+|. +.-.||||||+=.
T Consensus 195 ~~~~~HSl~VA~~A~~LA~~~g~d~~~a~~AGLLHDIGK 233 (342)
T PRK07152 195 EYRYKHCLRVAQLAAELAKKNNLDPKKAYYAGLYHDITK 233 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHhhc
Confidence 455699999987653 356665 4588999999854
No 97
>PF05153 DUF706: Family of unknown function (DUF706) ; InterPro: IPR007828 Inositol oxygenase (1.13.99.1 from EC) is involved in the biosynthesis of UDP-glucuronic acid (UDP-GlcA), providing nucleotide sugars for cell-wall polymers. It may be also involved in plant ascorbate biosynthesis [, ].; GO: 0005506 iron ion binding, 0050113 inositol oxygenase activity, 0019310 inositol catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 2HUO_A 3BXD_A 2IBN_A.
Probab=30.36 E-value=68 Score=33.61 Aligned_cols=52 Identities=25% Similarity=0.255 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhcCCccccCCccchhHHHHHHHHHhcCCCHHH-HHHHhhccc
Q 006686 149 VRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWES-IAAGLLHDT 200 (635)
Q Consensus 149 v~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa~l~~D~~t-I~AALLHDv 200 (635)
|.+|+++....-+.--.....|=|.|.+..|.....-..+++- ..+||+||.
T Consensus 41 i~eA~~~L~~LvDeSDPD~d~~~i~H~lQTAEaiR~d~~~~dW~~LtGLiHDL 93 (253)
T PF05153_consen 41 IWEALELLNTLVDESDPDTDLPQIQHALQTAEAIRRDHPDPDWMQLTGLIHDL 93 (253)
T ss_dssp HHHHHHHGGG---TT-TT--S-HHHHHHHHHHHHHHHSTT-HHHHHHHHHTTG
T ss_pred HHHHHHHHHHhccCccCCCchhHHHHHHHHHHHHHHhCCCcchhhheehhccc
Confidence 5566666655554433345678899999999998765445554 468999996
No 98
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=29.71 E-value=55 Score=39.19 Aligned_cols=51 Identities=25% Similarity=0.445 Sum_probs=39.4
Q ss_pred CCceeecCCCCcHHHHHHHh---------chhhhc----ceEEEEECC--EecCC-CccCCCCCEEE
Q 006686 571 RGEIKNLPKGATVVDYAYMI---------HTEIGN----KMVAAKVNG--NLVSP-THVLANAEVVE 621 (635)
Q Consensus 571 dG~~~~lp~GaT~lD~A~~I---------h~~lg~----~~v~AkVNG--~~vdL-~~~L~~gd~VE 621 (635)
||..+++|+|.|+++.|... |+.++. ++..+.|+| +++.- .+|..+|.+|.
T Consensus 7 DG~ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg~~k~~~SC~tpv~dGM~I~ 73 (693)
T COG1034 7 DGKEIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEGAPKLVASCATPVTDGMVIS 73 (693)
T ss_pred CCEEEecCCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecCCCccccccccccCCCeEEe
Confidence 89999999999999999985 555542 367788899 55444 56889888843
No 99
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=29.01 E-value=59 Score=29.50 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.0
Q ss_pred EEECCEecCCCccCCCCCEEEEEecC
Q 006686 601 AKVNGNLVSPTHVLANAEVVEIITYN 626 (635)
Q Consensus 601 AkVNG~~vdL~~~L~~gd~VEIiT~~ 626 (635)
.+|||+.+-.++.++.||+|+|-...
T Consensus 36 V~vNG~~aKpS~~VK~GD~l~i~~~~ 61 (100)
T COG1188 36 VKVNGQRAKPSKEVKVGDILTIRFGN 61 (100)
T ss_pred EEECCEEcccccccCCCCEEEEEeCC
Confidence 67899999999999999999996544
No 100
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=27.64 E-value=40 Score=27.02 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=18.1
Q ss_pred EEEECCEecCC--CccCCCCCEEEE
Q 006686 600 AAKVNGNLVSP--THVLANAEVVEI 622 (635)
Q Consensus 600 ~AkVNG~~vdL--~~~L~~gd~VEI 622 (635)
+..|||+.+.. .++|++||+|+|
T Consensus 43 gt~vng~~l~~~~~~~L~~gd~i~~ 67 (68)
T PF00498_consen 43 GTFVNGQRLGPGEPVPLKDGDIIRF 67 (68)
T ss_dssp -EEETTEEESSTSEEEE-TTEEEEE
T ss_pred cEEECCEEcCCCCEEECCCCCEEEc
Confidence 68899999988 568999999976
No 101
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=26.16 E-value=2.7e+02 Score=22.50 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=41.8
Q ss_pred ceeeCCCCce--eecCCCCcHHHHHHHhchhhhcc--eEEEEECCEecCCCc-----cCCCCCEEEEEe
Q 006686 565 VFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTH-----VLANAEVVEIIT 624 (635)
Q Consensus 565 v~V~tPdG~~--~~lp~GaT~lD~A~~Ih~~lg~~--~v~AkVNG~~vdL~~-----~L~~gd~VEIiT 624 (635)
|+|.+++|+. ++++...|+.++-..|+...|-. ..--..+|+...-+. .+++|++|.++-
T Consensus 3 i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (76)
T cd01803 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (76)
T ss_pred EEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 6788888875 46677889999999997765533 233345777655443 467788888765
No 102
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=26.13 E-value=1.8e+02 Score=24.09 Aligned_cols=60 Identities=13% Similarity=0.079 Sum_probs=40.4
Q ss_pred ceeeCCCCce--eecCCCCcHHHHHHHhchhhhcce--EEEEECCEecCCCc-----cCCCCCEEEEEe
Q 006686 565 VFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGNKM--VAAKVNGNLVSPTH-----VLANAEVVEIIT 624 (635)
Q Consensus 565 v~V~tPdG~~--~~lp~GaT~lD~A~~Ih~~lg~~~--v~AkVNG~~vdL~~-----~L~~gd~VEIiT 624 (635)
|+|.+++|+. +++....|+.++=..|....|-.+ .--..+|+...-+. -+++|+++.+.-
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNL 69 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 6789999986 677788999999888876554221 22335676544333 467788877653
No 103
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=25.26 E-value=1.1e+02 Score=37.37 Aligned_cols=55 Identities=13% Similarity=0.070 Sum_probs=40.8
Q ss_pred CCCceeecCCCCcHHHHHHHhchhhh-------------cceEEEEECCEecCC-CccCCCCCEEEEEe
Q 006686 570 PRGEIKNLPKGATVVDYAYMIHTEIG-------------NKMVAAKVNGNLVSP-THVLANAEVVEIIT 624 (635)
Q Consensus 570 PdG~~~~lp~GaT~lD~A~~Ih~~lg-------------~~~v~AkVNG~~vdL-~~~L~~gd~VEIiT 624 (635)
=||..+++|+|.|++++|.+.+-.+. -++..+.|||+.+.- .+++++|.+|+--|
T Consensus 6 IdG~~v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV~G~~~~AC~t~v~dGM~V~T~s 74 (819)
T PRK08493 6 INGKECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEADGKRVYSCNTKAKEGMNILTNT 74 (819)
T ss_pred ECCEEEEeCCCCHHHHHHHHcCCccccccccCCCCCCccccceEEEECCEEeccccCCCCCCCEEEecC
Confidence 48999999999999999988654332 124667899987543 55888888776543
No 104
>PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=24.32 E-value=1e+02 Score=33.71 Aligned_cols=57 Identities=23% Similarity=0.173 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHhhcCCccc-cCCcc----chhHHHHHHHHH----hcCCCHHH-HHHHhhcccc
Q 006686 145 ELELVRRALMLAFEAHDGQKRR-SGEPF----IIHPVEVARILG----ELELDWES-IAAGLLHDTV 201 (635)
Q Consensus 145 ~~~~v~~A~~~A~~aH~gQ~Rk-sGePY----i~Hpl~VA~iLa----~l~~D~~t-I~AALLHDvv 201 (635)
|.++|-..-.|=+-.+..|.-- .|.-+ ++|.++|+.+-. .++.+.+. -+|||+||+=
T Consensus 32 D~drii~s~~frRL~~ktQv~~~~~~dh~rtR~~Hsl~V~~iar~~~~~l~~~~~l~~aaaL~HDiG 98 (336)
T PRK01286 32 DRDRIIHSKAFRRLKHKTQVFINPEGDHYRTRLTHTLEVAQIARTIARALRLNEDLTEAIALGHDLG 98 (336)
T ss_pred hHHHHhCCHHHHhhhccceecccCCCcccccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC
Confidence 5555555555555555566432 22223 699999999754 45666543 5789999973
No 105
>PRK03007 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional
Probab=24.05 E-value=1.1e+02 Score=34.66 Aligned_cols=58 Identities=29% Similarity=0.192 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHHHHhhcCCccccCC-cc----chhHHHHHHHHH----hcCCCHH-HHHHHhhcccc
Q 006686 144 NELELVRRALMLAFEAHDGQKRRSGE-PF----IIHPVEVARILG----ELELDWE-SIAAGLLHDTV 201 (635)
Q Consensus 144 ~~~~~v~~A~~~A~~aH~gQ~RksGe-PY----i~Hpl~VA~iLa----~l~~D~~-tI~AALLHDvv 201 (635)
.|.++|--.-.|-.-.++.|.-..++ -+ ++|-++||.+-. .++.+.+ +.+|||+||+=
T Consensus 39 RDrdRIi~S~afRRL~~KtQVf~~~~~Df~~tRltHslev~~~~r~~~~~~~~~~~~~~~~~l~hd~G 106 (428)
T PRK03007 39 RDRARVLHSAALRRLADKTQVVGPREGDTPRTRLTHSLEVAQIGRGIAAGLGCDPDLVDLAGLAHDIG 106 (428)
T ss_pred hhHHHHhCCHHHHhhhccceeccCCCCCccccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC
Confidence 36777777777877788888644322 22 589999998864 3566554 57899999973
No 106
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=23.29 E-value=1.4e+02 Score=28.22 Aligned_cols=61 Identities=13% Similarity=0.274 Sum_probs=41.4
Q ss_pred cCCceeeCCCCceeecCCCCcHHHHHHHhchhhhcceE----EEEECC--EecCCCccCCCCCEEEEEecC
Q 006686 562 GSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMV----AAKVNG--NLVSPTHVLANAEVVEIITYN 626 (635)
Q Consensus 562 ~~~v~V~tPdG~~~~lp~GaT~lD~A~~Ih~~lg~~~v----~AkVNG--~~vdL~~~L~~gd~VEIiT~~ 626 (635)
...|+|..|||.+.+|+...|+.|+-..- | .+.+ ...+.. ..++.+..|+.|.+-=++..+
T Consensus 15 ~~~vkvv~~~G~v~~~~~pv~a~evm~~~-P---~h~v~~~~~~~~~~~~~~l~~d~~L~~G~~Y~llP~~ 81 (181)
T PF14009_consen 15 AATVKVVHPDGKVEEFKRPVTAAEVMLEN-P---GHFVCDSDSFRFGRRIKPLPPDEELQPGQIYFLLPMS 81 (181)
T ss_pred CceEEEEcCCCcEEEeCCCcCHHHHHHHC-C---CCEEeccccccCCCcccCCCccCeecCCCEEEEEEcc
Confidence 45788999999999999999999997663 2 2221 112222 244556788888776666554
No 107
>smart00455 RBD Raf-like Ras-binding domain.
Probab=22.89 E-value=1.4e+02 Score=25.10 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=31.7
Q ss_pred ceeeCCCCc--eeecCCCCcHHHHHHHhchhhh--cceEEEEECC--EecCCCc
Q 006686 565 VFVFTPRGE--IKNLPKGATVVDYAYMIHTEIG--NKMVAAKVNG--NLVSPTH 612 (635)
Q Consensus 565 v~V~tPdG~--~~~lp~GaT~lD~A~~Ih~~lg--~~~v~AkVNG--~~vdL~~ 612 (635)
+.|++|||+ ...+..|.|+.|+...+=..-| -.++..+.-| +.++++.
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ldl~~ 55 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLDLNQ 55 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcceecCC
Confidence 468999996 4555789999999888733322 3345555533 5566654
No 108
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=22.69 E-value=2.1e+02 Score=22.40 Aligned_cols=55 Identities=13% Similarity=0.212 Sum_probs=35.5
Q ss_pred CCCCce--eecCCCCcHHHHHHHhchhhhcce--EEEEECCEecCCCcc-----CCCCCEEEEE
Q 006686 569 TPRGEI--KNLPKGATVVDYAYMIHTEIGNKM--VAAKVNGNLVSPTHV-----LANAEVVEII 623 (635)
Q Consensus 569 tPdG~~--~~lp~GaT~lD~A~~Ih~~lg~~~--v~AkVNG~~vdL~~~-----L~~gd~VEIi 623 (635)
..+|.. +.++...|+.++-..|+...|-.. ..-..||+..+-+.. +.+|+.|.++
T Consensus 4 ~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~ 67 (69)
T cd01769 4 TLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLV 67 (69)
T ss_pred ccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEE
Confidence 334544 566788999999999987666332 334568876554443 4677777665
No 109
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=22.26 E-value=1.8e+02 Score=24.74 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=28.4
Q ss_pred cccccccChhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 006686 318 NLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIED 360 (635)
Q Consensus 318 DLaf~~l~P~~Y~~i~~~l~~~r~~~e~~l~~~~~~L~~~L~~ 360 (635)
.+--.+..|++|+++.++|++.-..-|-...++.+.+-+++-+
T Consensus 6 k~P~v~v~~~dfne~~kRLdeieekvef~~~Ev~Qr~GkkiGR 48 (75)
T COG4064 6 KVPKVVVDPDDFNEIHKRLDEIEEKVEFVNGEVYQRIGKKIGR 48 (75)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 3455678999999999999986555444444455555544443
No 110
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=22.13 E-value=3e+02 Score=29.44 Aligned_cols=114 Identities=14% Similarity=0.109 Sum_probs=62.2
Q ss_pred hhhhHhhhhhccCCCCcchhhHHHHHHHHHHHHHhhhcHHHHHHHHhccccccc-----ChhhHHHHHHHHHhHHHHHHH
Q 006686 271 LADRLHNMRTLSHMPPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYT-----NAEDYAKVKRRVADLYKEHEK 345 (635)
Q Consensus 271 LADRLhNmRtL~~~~~~kq~~iA~ETl~iyaPLA~rLGi~~ik~ELEDLaf~~l-----~P~~Y~~i~~~l~~~r~~~e~ 345 (635)
+.-+-+|.-.+...++++|.++..|++++.+- .-|+.++-..+--+.|+++ .++=|.+.+++.++.-.+--+
T Consensus 11 ~l~q~~~~~~~~t~ded~~~~~~~~~~~lls~---~y~~~~~~a~~~t~ihr~v~k~~g~eDPyke~K~r~NeiA~~vl~ 87 (285)
T COG1578 11 LLRQAVNAVKLATDDEDLRSRIMSEALKLLSE---EYGESAVPAIAGTLIHREVYKILGNEDPYKEYKRRANEIALKVLP 87 (285)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh---hhCcCCCcHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 34445555555566788899999999987653 3344443333333333333 366788887777664322111
Q ss_pred HHH--------HHHHHHHHHHhhhhccccccceeEEEE-EecChHHHHHHHHhcCCC
Q 006686 346 ELE--------EANKILMKKIEDDQFLDLMTVKTEIRS-VCKEPYSIYKAVLKSRGS 393 (635)
Q Consensus 346 ~l~--------~~~~~L~~~L~~~~~l~~~~i~~~V~~-R~K~~~SI~~Km~rk~~~ 393 (635)
.+. .+...++-.+-. +.+++.|.| +...+..-..|+...+..
T Consensus 88 ~vr~~~~~~~~dl~~Avk~ai~G------N~iDfgv~G~~~~~lee~~~~~~~~~l~ 138 (285)
T COG1578 88 KVRENIEDTPEDLKTAVKLAIVG------NVIDFGVLGFSPFDLEEEVEKLLDAELY 138 (285)
T ss_pred HHHhcccCChHHHHHHHHHHHHh------cceeeccccCCHhHHHHHHHHhhcCccc
Confidence 111 122222222222 246788887 677777666776655543
No 111
>PTZ00044 ubiquitin; Provisional
Probab=21.79 E-value=2e+02 Score=23.59 Aligned_cols=61 Identities=13% Similarity=0.209 Sum_probs=41.5
Q ss_pred CceeeCCCCce--eecCCCCcHHHHHHHhchhhhcce--EEEEECCEecCCC-----ccCCCCCEEEEEe
Q 006686 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGNKM--VAAKVNGNLVSPT-----HVLANAEVVEIIT 624 (635)
Q Consensus 564 ~v~V~tPdG~~--~~lp~GaT~lD~A~~Ih~~lg~~~--v~AkVNG~~vdL~-----~~L~~gd~VEIiT 624 (635)
.|+|.+++|+. ++++...|+.++-..|....|-.+ .--..+|+..+-+ +.+++|++|.++-
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (76)
T PTZ00044 2 QILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVL 71 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEE
Confidence 37888999875 566788899999999877665332 2223467665433 3567788888764
No 112
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=21.61 E-value=4.5e+02 Score=22.22 Aligned_cols=66 Identities=12% Similarity=0.109 Sum_probs=45.5
Q ss_pred CceeeCCCCce-ee---cCCCCcHHHHHHHhchhhhcc--eEEEEECCEecCCCc-----cCCCCCEEEEEecCCcc
Q 006686 564 RVFVFTPRGEI-KN---LPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTH-----VLANAEVVEIITYNVSF 629 (635)
Q Consensus 564 ~v~V~tPdG~~-~~---lp~GaT~lD~A~~Ih~~lg~~--~v~AkVNG~~vdL~~-----~L~~gd~VEIiT~~d~E 629 (635)
.|+|.+++|+. +. ++...|+.++-..|....|-. ......+|+...-+. -+++|++|.+.-..|++
T Consensus 2 ~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~~~ 78 (78)
T cd01797 2 WIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQDPD 78 (78)
T ss_pred EEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 37889999985 33 567889999998887665422 233445677655444 46889999988766653
No 113
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=20.82 E-value=1.4e+02 Score=36.41 Aligned_cols=53 Identities=25% Similarity=0.315 Sum_probs=38.9
Q ss_pred CCCceeecCCCCcHHHHHHHhchhhhc-------------ceEEEEECCEec---CCCccCCCCCEEEE
Q 006686 570 PRGEIKNLPKGATVVDYAYMIHTEIGN-------------KMVAAKVNGNLV---SPTHVLANAEVVEI 622 (635)
Q Consensus 570 PdG~~~~lp~GaT~lD~A~~Ih~~lg~-------------~~v~AkVNG~~v---dL~~~L~~gd~VEI 622 (635)
=||..+++|+|.|++|+|...+-.+-+ +..-+.|+|... .=.+++++|.+|+=
T Consensus 9 idg~~~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev~g~~~~~~aC~t~v~~gm~V~t 77 (797)
T PRK07860 9 IDGVEVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEVEGQRKPQASCTTTVTDGMVVKT 77 (797)
T ss_pred ECCEEEEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEECCCcccccccCCCCCCCcEEEe
Confidence 499999999999999999886433332 235678888642 33578899988753
No 114
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=20.38 E-value=1.1e+02 Score=25.64 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=30.0
Q ss_pred CceeeCCCCc--eeecCCCCcHHHHHHHhchhhh--cceEEEEEC--CEecCCCc
Q 006686 564 RVFVFTPRGE--IKNLPKGATVVDYAYMIHTEIG--NKMVAAKVN--GNLVSPTH 612 (635)
Q Consensus 564 ~v~V~tPdG~--~~~lp~GaT~lD~A~~Ih~~lg--~~~v~AkVN--G~~vdL~~ 612 (635)
.+.|++|||+ ...+-.|.|+.|+...+=..-| -.++..+.- .+..++++
T Consensus 2 ~~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~ 56 (71)
T PF02196_consen 2 TCRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQ 56 (71)
T ss_dssp EEEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTS
T ss_pred eEEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCC
Confidence 3679999996 5666789999999887733322 223344432 45555554
Done!