Query 006686
Match_columns 635
No_of_seqs 447 out of 2377
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 06:15:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vj7_A Bifunctional RELA/SPOT; 100.0 2E-103 7E-108 845.9 25.5 377 125-554 7-383 (393)
2 3l9d_A SMU.1046C, putative GTP 100.0 4.2E-42 1.4E-46 350.0 13.2 169 298-498 19-195 (255)
3 2be3_A GTP pyrophosphokinase; 100.0 1.4E-37 4.9E-42 312.8 17.0 163 371-562 43-213 (226)
4 3nqw_A CG11900; stringent resp 100.0 4.6E-35 1.6E-39 285.0 8.3 163 143-319 3-172 (179)
5 3nr1_A HD domain-containing pr 100.0 3E-33 1E-37 271.9 10.0 132 144-289 2-137 (178)
6 3hvz_A Uncharacterized protein 99.8 2.7E-20 9.4E-25 157.5 7.7 71 559-629 2-72 (78)
7 1wwt_A Threonyl-tRNA synthetas 99.5 2.4E-14 8.1E-19 123.0 5.8 72 563-634 10-82 (88)
8 2kmm_A Guanosine-3',5'-BIS(dip 99.4 8.7E-13 3E-17 108.8 8.4 66 564-629 2-67 (73)
9 2eki_A DRG 1, developmentally- 99.2 1.7E-11 5.8E-16 106.3 7.2 67 563-629 10-91 (93)
10 1tke_A Threonyl-tRNA synthetas 99.2 1.4E-11 4.7E-16 123.2 4.9 70 564-633 1-70 (224)
11 1qf6_A THRRS, threonyl-tRNA sy 98.5 3E-08 1E-12 113.4 3.5 69 565-633 2-70 (642)
12 1wxq_A GTP-binding protein; st 98.5 5.5E-08 1.9E-12 105.1 4.5 64 563-626 318-396 (397)
13 1nyr_A Threonyl-tRNA synthetas 98.4 6.6E-08 2.3E-12 110.6 3.1 70 564-633 3-72 (645)
14 1f0z_A THis protein; ubiquitin 97.2 0.00045 1.5E-08 55.7 5.4 53 571-625 6-62 (66)
15 1tyg_B YJBS; alpha beta barrel 97.1 0.00058 2E-08 58.6 6.0 53 571-625 26-83 (87)
16 2l32_A Small archaeal modifier 97.0 0.00054 1.8E-08 56.9 4.0 50 573-625 13-62 (74)
17 1rws_A Hypothetical protein PF 96.9 0.00034 1.2E-08 58.2 2.6 56 568-625 18-73 (77)
18 1ryj_A Unknown; beta/alpha pro 96.9 0.0013 4.6E-08 53.7 5.8 49 575-625 18-66 (70)
19 2cu3_A Unknown function protei 96.9 0.0015 5E-08 52.4 5.9 52 571-625 5-60 (64)
20 2k5p_A THis protein, thiamine- 96.8 0.0008 2.7E-08 56.5 3.4 53 571-625 6-65 (78)
21 2kl0_A Putative thiamin biosyn 96.7 0.0017 5.9E-08 53.7 4.8 53 571-626 6-62 (73)
22 2hj1_A Hypothetical protein; s 96.6 0.0012 4.2E-08 57.7 3.4 52 574-625 29-85 (97)
23 4a9a_A Ribosome-interacting GT 96.5 0.0048 1.7E-07 66.1 7.9 62 563-624 299-375 (376)
24 2q5w_D Molybdopterin convertin 96.1 0.0047 1.6E-07 50.7 4.4 53 573-625 18-73 (77)
25 1vjk_A Molybdopterin convertin 95.9 0.0091 3.1E-07 51.7 5.5 53 573-625 29-94 (98)
26 3po0_A Small archaeal modifier 95.7 0.017 5.9E-07 48.8 6.4 53 573-625 20-85 (89)
27 1fm0_D Molybdopterin convertin 95.1 0.033 1.1E-06 45.9 6.0 48 578-625 23-77 (81)
28 2dby_A GTP-binding protein; GD 94.7 0.029 9.9E-07 59.9 5.6 62 563-624 283-366 (368)
29 2g1e_A Hypothetical protein TA 94.1 0.068 2.3E-06 44.8 5.5 53 573-625 17-86 (90)
30 1jal_A YCHF protein; nucleotid 93.2 0.063 2.1E-06 57.2 4.6 62 563-624 278-361 (363)
31 2ohf_A Protein OLA1, GTP-bindi 92.8 0.11 3.7E-06 56.1 5.8 64 563-626 304-389 (396)
32 3rpf_C Molybdopterin convertin 92.3 0.15 5.1E-06 41.6 4.7 52 573-625 14-70 (74)
33 3dwg_C 9.5 kDa culture filtrat 92.0 0.24 8.3E-06 41.9 5.9 51 574-625 20-89 (93)
34 2l52_A Methanosarcina acetivor 91.6 0.21 7.2E-06 43.2 5.1 51 574-625 22-95 (99)
35 1ni3_A YCHF GTPase, YCHF GTP-b 89.1 0.2 6.7E-06 53.9 3.3 61 563-623 306-388 (392)
36 3dto_A BH2835 protein; all alp 87.0 1.1 3.8E-05 44.4 7.0 54 146-202 4-62 (223)
37 1v8c_A MOAD related protein; r 86.4 0.88 3E-05 43.2 5.7 52 573-625 16-83 (168)
38 3b57_A LIN1889 protein; Q92AN1 84.1 1.4 4.7E-05 42.8 5.9 54 147-203 5-63 (209)
39 2qjl_A URM1, ubiquitin-related 83.1 2.2 7.5E-05 36.6 6.2 51 575-625 24-95 (99)
40 1wgk_A Riken cDNA 2900073H19 p 72.6 6.7 0.00023 34.8 6.2 51 575-625 34-104 (114)
41 3djb_A Hydrolase, HD family; a 67.4 7.8 0.00027 38.2 6.1 54 146-202 4-62 (223)
42 2k9x_A Tburm1, uncharacterized 64.7 8.2 0.00028 34.0 5.1 46 580-625 34-98 (110)
43 2pq7_A Predicted HD superfamil 63.7 8.7 0.0003 37.2 5.6 50 148-200 14-68 (220)
44 2ibn_A Inositol oxygenase; red 63.5 6.4 0.00022 39.5 4.5 52 149-200 38-90 (250)
45 2pjq_A Uncharacterized protein 63.0 7.7 0.00026 38.1 5.1 53 147-202 10-67 (231)
46 2qgs_A Protein Se1688; alpha-h 58.8 10 0.00035 37.0 5.2 54 147-203 5-64 (225)
47 2o08_A BH1327 protein; putativ 58.8 5.8 0.0002 37.6 3.3 32 171-202 19-55 (188)
48 3ccg_A HD superfamily hydrolas 56.7 6.6 0.00022 37.2 3.3 32 171-202 20-56 (190)
49 2ogi_A Hypothetical protein SA 53.6 7.9 0.00027 37.0 3.3 32 171-202 27-63 (196)
50 1ndd_A NEDD8, protein (ubiquit 49.7 57 0.0019 25.1 7.3 61 564-624 2-71 (76)
51 2dqb_A Deoxyguanosinetriphosph 47.5 11 0.00039 40.1 3.6 57 145-201 45-111 (376)
52 2cqz_A 177AA long hypothetical 46.8 13 0.00046 35.0 3.6 35 169-203 31-75 (177)
53 3a9j_A Ubiquitin; protein comp 42.7 79 0.0027 24.2 7.1 61 564-624 2-71 (76)
54 2k6p_A Uncharacterized protein 40.5 17 0.0006 30.2 3.0 24 601-624 28-51 (92)
55 3a4r_A Nfatc2-interacting prot 40.2 89 0.003 25.2 7.2 61 564-624 9-79 (79)
56 2hek_A Hypothetical protein; p 37.3 17 0.00058 38.6 3.0 33 170-202 50-88 (371)
57 2gz4_A Hypothetical protein AT 35.8 24 0.00082 34.5 3.5 35 169-203 54-90 (207)
58 2paq_A 5'-deoxynucleotidase YF 35.4 28 0.00096 33.6 3.9 35 168-202 29-74 (201)
59 2al3_A TUG long isoform; TUG U 35.2 1.2E+02 0.0041 25.8 7.3 63 564-626 11-82 (90)
60 2io0_B Small ubiquitin-related 33.5 91 0.0031 26.1 6.4 63 564-626 7-78 (91)
61 1uel_A HHR23B, UV excision rep 32.0 1.5E+02 0.0051 24.4 7.6 63 565-627 3-77 (95)
62 1yx5_B Ubiquitin; proteasome, 31.8 1.2E+02 0.0041 25.0 6.9 62 564-625 2-72 (98)
63 1dm9_A Hypothetical 15.5 KD pr 31.4 34 0.0012 30.9 3.6 25 601-625 36-60 (133)
64 3gw7_A Uncharacterized protein 31.1 23 0.0008 35.2 2.6 32 172-203 27-63 (239)
65 2faz_A Ubiquitin-like containi 30.6 1.5E+02 0.0051 23.0 7.0 61 564-624 4-75 (78)
66 3tm8_A BD1817, uncharacterized 30.4 29 0.001 35.8 3.3 35 167-201 162-206 (328)
67 2io1_B Small ubiquitin-related 29.8 1.2E+02 0.0042 25.4 6.6 62 564-625 9-79 (94)
68 2jxx_A Nfatc2-interacting prot 28.6 1.1E+02 0.0036 26.3 6.0 61 564-624 27-97 (97)
69 3hc1_A Uncharacterized HDOD do 28.2 40 0.0014 34.1 3.9 32 170-201 118-155 (305)
70 1frr_A Ferredoxin I; electron 28.1 27 0.00091 29.0 2.1 31 565-595 4-35 (95)
71 3fm8_A Kinesin-like protein KI 28.1 29 0.001 31.0 2.5 23 600-622 91-113 (124)
72 1wm3_A Ubiquitin-like protein 27.4 1.2E+02 0.0043 23.7 6.0 60 564-623 3-71 (72)
73 2wyq_A HHR23A, UV excision rep 27.2 1.8E+02 0.0061 22.9 7.0 63 564-626 7-81 (85)
74 3n3k_B Ubiquitin; hydrolase, p 26.8 1.5E+02 0.0052 23.2 6.5 61 564-624 5-74 (85)
75 4ejq_A Kinesin-like protein KI 26.4 35 0.0012 31.4 2.8 23 600-622 111-133 (154)
76 1xx7_A Oxetanocin-like protein 26.4 44 0.0015 31.8 3.5 35 169-203 36-80 (184)
77 3mtn_B UBA80, ubcep1, ubiquiti 25.3 1.9E+02 0.0066 22.5 6.9 61 564-624 5-74 (85)
78 2huo_A Inositol oxygenase; pro 25.3 71 0.0024 32.6 4.9 52 149-200 77-129 (289)
79 1ynb_A Hypothetical protein AF 24.8 84 0.0029 29.7 5.1 34 169-202 37-78 (173)
80 2dzi_A Ubiquitin-like protein 24.3 99 0.0034 24.1 4.9 59 565-623 10-77 (81)
81 2uyz_B Small ubiquitin-related 24.2 1.1E+02 0.0037 24.0 5.0 61 564-624 5-74 (79)
82 3phx_B Ubiquitin-like protein 23.1 2.6E+02 0.0091 21.6 7.4 61 564-624 6-75 (79)
83 2d07_B Ubiquitin-like protein 23.0 1.9E+02 0.0067 24.0 6.6 62 564-625 19-89 (93)
84 2q14_A Phosphohydrolase; BT420 21.6 27 0.00092 37.6 1.1 31 171-201 56-99 (410)
85 2kzr_A Ubiquitin thioesterase 21.5 51 0.0017 26.9 2.6 67 564-630 2-82 (86)
86 1awd_A Ferredoxin; electron tr 21.0 45 0.0015 27.6 2.2 30 565-594 3-33 (94)
87 3k9o_B Ubiquitin, UBB+1; E2-25 20.7 3E+02 0.01 22.2 7.3 61 564-624 3-72 (96)
88 1wyw_B Ubiquitin-like protein 20.6 1.5E+02 0.005 24.6 5.4 61 564-624 23-92 (97)
89 4i1u_A Dephospho-COA kinase; s 20.6 67 0.0023 31.2 3.6 40 177-221 24-66 (210)
90 4h87_A Kanadaptin; FHA domain 20.4 61 0.0021 29.0 3.0 23 600-622 95-119 (130)
91 1wln_A Afadin; beta sandwich, 20.3 41 0.0014 29.4 1.9 23 600-622 81-103 (120)
No 1
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=100.00 E-value=2.1e-103 Score=845.94 Aligned_cols=377 Identities=37% Similarity=0.613 Sum_probs=309.4
Q ss_pred CChHHHHHhhhhhhcCCChhhHHHHHHHHHHHHHhhcCCccccCCccchhHHHHHHHHHhcCCCHHHHHHHhhccccccC
Q 006686 125 DSPERLWEDLRPTISYLSPNELELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLHDTVEDT 204 (635)
Q Consensus 125 ~~~~~~~~~l~~~~~~~~~~~~~~v~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa~l~~D~~tI~AALLHDvvEDT 204 (635)
++.+.+.+.+ ..|+++.+.+++.+|+.||.++|.||+|++|+|||.||++||.||+++++|.++++||||||+||||
T Consensus 7 ~~~~~l~~~~---~~~~~~~~~~~l~~A~~~A~~aH~gQ~rksGePYi~Hpl~VA~iLa~l~~D~~~i~AALLHDvvEDt 83 (393)
T 1vj7_A 7 LTGEEVVALA---AKYMNETDAAFVKKALDYATAAHFYQVRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDT 83 (393)
T ss_dssp CCHHHHHHHH---HHHSCHHHHHHHHHHHHHHHHHTTTCBCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHS
T ss_pred CCHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHhccCcCCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHhhhHHhcC
Confidence 5545555554 3789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhChHHHHHHHhhhccccccccccccCCchhhhhhHHHHHHHHHhccCCceEEeeehhhhHhhhhhccCC
Q 006686 205 NVVTFERIEEEFGATVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHM 284 (635)
Q Consensus 205 ~~~T~e~I~~~FG~~Va~LV~gvTkv~~l~~~~~~~~~~~~~~~qae~lRkmLlam~~DiRvvLVKLADRLhNmRtL~~~ 284 (635)
+ +|.++|++.||++|+.||+||||++++.. . .....|+|++||||+||++|+||++|||||||||||++..+
T Consensus 84 ~-~t~e~I~~~FG~~Va~lV~gvTk~~~~~~---~----~~~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~~~ 155 (393)
T 1vj7_A 84 D-ITLDNIEFDFGKDVRDIVDGVTKLGKVEY---K----SHEEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHL 155 (393)
T ss_dssp S-CCHHHHHHHHCHHHHHHHHHHHHHC---------------------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC--
T ss_pred C-CCHHHHHHHhCHHHHHHHHHHHhcccCCc---c----cHHHHHHHHHHHHHHhhcCCcceeeeeHHHHHHccCchhhC
Confidence 8 89999999999999999999999887642 1 12346899999999999999999999999999999999999
Q ss_pred CCcchhhHHHHHHHHHHHHHhhhcHHHHHHHHhcccccccChhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 006686 285 PPHKQSSIATETLQVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFL 364 (635)
Q Consensus 285 ~~~kq~~iA~ETl~iyaPLA~rLGi~~ik~ELEDLaf~~l~P~~Y~~i~~~l~~~r~~~e~~l~~~~~~L~~~L~~~~~l 364 (635)
|+++|+++|+||++|||||||||||++||||||||||+||+|+.|+.|.++|.+.+.+++.+++.++..|++.|.+.
T Consensus 156 ~~ek~~~iA~Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~p~~y~~i~~~l~~~r~~r~~~i~~i~~~l~~~L~~~--- 232 (393)
T 1vj7_A 156 RKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQ--- 232 (393)
T ss_dssp ----HHHHHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred ChHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred ccccceeEEEEEecChHHHHHHHHhcCCCcccccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccccccccc
Q 006686 365 DLMTVKTEIRSVCKEPYSIYKAVLKSRGSINEVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMK 444 (635)
Q Consensus 365 ~~~~i~~~V~~R~K~~~SI~~Km~rk~~~~~~I~Di~giRIIv~~~~~~~~~~~~~~~~dcY~vlg~vh~~~~p~~~~~k 444 (635)
|+.+.|+||+|++||||+||.|++.+|++|+|++|+||||+ +.+|||.++|+||+.|+|+|++||
T Consensus 233 ---gi~~~v~~R~K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~------------~~~dcy~vl~~i~~~~~~~~~~~k 297 (393)
T 1vj7_A 233 ---GLFGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVME------------TQSDVYAMVGYIHELWRPMPGRFK 297 (393)
T ss_dssp ---TCCCEEEECCCCHHHHHHHHHHHGGGCCTTGGGCEEEEEES------------SHHHHHHHHHHHHHHSCBCTTCCE
T ss_pred ---CCceEEEEEeCChHHHHHHHHHhCCChhhhcccceEEEEEC------------CHHHHHHHHHHHHhcCCCCCCccc
Confidence 46889999999999999999999999999999999999976 468999999999999999999999
Q ss_pred ccccCCCCCCCcceEEEEeccCCCCceeEEEEEechhhHHHHHHHHHhhccCccccccccccCCCCCCCCCCcccccchh
Q 006686 445 DYIATPKPNGYQSLHTTLIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLNNA 524 (635)
Q Consensus 445 DYIa~PK~nGYqSLHt~V~~~~~~~~~~vEIQIRT~~Mh~wAE~G~aah~~yK~~~~g~~~~~~~~~~~~~~~~~~~~~~ 524 (635)
|||++||+||||||||+|.++ .+ ++||||||..||.|||+||++||+||++.. + . . ...
T Consensus 298 DyIa~PK~nGYqSlH~~v~~p---~~-~vEIQIRT~~mh~~Ae~g~aah~~YK~~~~---------~-~--~-----~~~ 356 (393)
T 1vj7_A 298 DYIAAPKANGYQSIHTTVYGP---KG-PIEIQIRTKEMHQVAEYGVAAHWAYKKGVR---------G-K--V-----NQA 356 (393)
T ss_dssp ETTTSCCTTCCCCEEEEEECS---SS-EEEEEEEEHHHHHHHHHTTCC--------------------------------
T ss_pred ccccCCCcCCcceeEEEEEeC---Cc-eEEEEEecHHHHHHHHhhHHHHhccccCCC---------c-c--c-----chh
Confidence 999999999999999999753 35 999999999999999999999999997421 0 0 0 011
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCChhhhHh
Q 006686 525 NIALRISWLNAIREWQEEFVGNMTSREFVD 554 (635)
Q Consensus 525 ~~~~~~~wl~~l~~~~~~~~~~~~~~ef~~ 554 (635)
...++++||++|++||++. .++.||+-
T Consensus 357 ~~~~~~~wl~~ll~~~~~~---~~~~ef~~ 383 (393)
T 1vj7_A 357 EQKVGMNWIKELVELQDAS---NGDAVDFV 383 (393)
T ss_dssp ------CHHHHHHHC---------------
T ss_pred hhHHHHHHHHHHHHHHhcC---CCcHHHHH
Confidence 2235789999999999985 25667764
No 2
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans}
Probab=100.00 E-value=4.2e-42 Score=350.03 Aligned_cols=169 Identities=21% Similarity=0.209 Sum_probs=125.6
Q ss_pred HHHHHHHhhhcHHHHHHHHhcccccccChhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhccccccceeEEEEEe
Q 006686 298 QVFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILMKKIEDDQFLDLMTVKTEIRSVC 377 (635)
Q Consensus 298 ~iyaPLA~rLGi~~ik~ELEDLaf~~l~P~~Y~~i~~~l~~~r~~~e~~l~~~~~~L~~~L~~~~~l~~~~i~~~V~~R~ 377 (635)
.||||||+||||+.+|.|+|++.+.|. ..+.+++.+|+.++.+. ...... ..+ ..|+||+
T Consensus 19 ~i~apla~~lg~~~~~~~~~~~~~~Y~--~a~~el~~kl~~l~~e~-----------~~~~~~------~~i-~~V~~Rv 78 (255)
T 3l9d_A 19 SHMASMTGGQQMGRGSMNWEEFLDPYI--QAVGELKIKFRGIRKQF-----------RKQKRH------SPI-EFVTGRV 78 (255)
T ss_dssp ----------------CCHHHHTHHHH--HHHHHHHHHHHHHHHHH-----------HHTTSC------CSC-CEEEEEE
T ss_pred cchHhhhhHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-----------HHhhcc------CCc-ceEEeEE
Confidence 599999999999999999999987654 57777777666543222 111111 122 3799999
Q ss_pred cChHHHHHHHHhcCCCcc----cccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhcccccccccccccccCCCCC
Q 006686 378 KEPYSIYKAVLKSRGSIN----EVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPN 453 (635)
Q Consensus 378 K~~~SI~~Km~rk~~~~~----~I~Di~giRIIv~~~~~~~~~~~~~~~~dcY~vlg~vh~~~~p~~~~~kDYIa~PK~n 453 (635)
|+++||++||.|++.+++ +|+|++|+|||++ +.+|||.++++||+.|.|.|.++||||++||+|
T Consensus 79 Ks~~SI~~Km~Rk~~~~~~~~~~I~Di~GiRII~~------------~~~D~y~v~~~I~~~~~~~~~~~KDYIa~PK~n 146 (255)
T 3l9d_A 79 KPIESIKEKMVLRGIKKENLTQDMQDIAGLRIMVQ------------FVDDVNDVLELLRQRKDMKVIQERDYINNLKPS 146 (255)
T ss_dssp CCHHHHHHHHHHHTCCGGGHHHHCSCSEEEEEEES------------STTHHHHHHHHHHTCSSSEEEEEEEESCC-CCC
T ss_pred cCHHHHHHHHHhcCCCccchhhhccccceEEEEEe------------CHHHHHHHHHHHHhcCCCceeeeeccccCCCCC
Confidence 999999999999998887 7999999999976 457999999999999999999999999999999
Q ss_pred CCcceEEEEe-cc---CCCCceeEEEEEechhhHHHHHHHHHhhccCcc
Q 006686 454 GYQSLHTTLI-PF---LYESMFRLEVQIRTEEMDLIAERGIAAHYSGRV 498 (635)
Q Consensus 454 GYqSLHt~V~-~~---~~~~~~~vEIQIRT~~Mh~wAE~G~aah~~yK~ 498 (635)
||||||++|. |. .+..+.++||||||..||.|||+||+++|+|++
T Consensus 147 GYrSlH~iv~~p~~~~~g~~~~~vEIQIRT~~Mh~WAeieH~~~YK~~~ 195 (255)
T 3l9d_A 147 GYRSYHVIVEYPVDTISGQRIIMAEIQIRTLAMNFWATIEHSLNYKYHG 195 (255)
T ss_dssp SCCEEEEEEEEEEEETTEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHTT
T ss_pred CceeEEEEEEcccccccCCCceEEEEEECCHHHHHHHHHHHHHhcCCCC
Confidence 9999999994 31 234578999999999999999999999999995
No 3
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8
Probab=100.00 E-value=1.4e-37 Score=312.80 Aligned_cols=163 Identities=18% Similarity=0.195 Sum_probs=129.1
Q ss_pred eEEEEEecChHHHHHHHHhcCCCcc----cccceeeEEEEEcCCCCCCCCCCCCcHHHHHHHHHHhhccccccccccccc
Q 006686 371 TEIRSVCKEPYSIYKAVLKSRGSIN----EVNQIAQLRIIIKPKPCSGVGPLCSPQQICYHVLGLVHGIWTPIPRAMKDY 446 (635)
Q Consensus 371 ~~V~~R~K~~~SI~~Km~rk~~~~~----~I~Di~giRIIv~~~~~~~~~~~~~~~~dcY~vlg~vh~~~~p~~~~~kDY 446 (635)
..|+||+|+++||++||.|++.+++ +|+|++|+|||++ +.+|||.++++||+.|.|.|.++|||
T Consensus 43 ~~v~~RvK~~~Si~~K~~rk~~~~~~~~~~i~Di~GiRIi~~------------~~~d~y~v~~~i~~~~~~~~~~~kDy 110 (226)
T 2be3_A 43 EFVTGRVKPIESIKEKMARRGITYATLEHDLQDIAGLRVMVQ------------FVDDVKEVVDILHKRQDMRIIQERDY 110 (226)
T ss_dssp EEEEEEECCHHHHHHHHHHHTCCTTTHHHHCTTSEEEEEEES------------CGGGHHHHHHHHHTCSSEEEEEEEET
T ss_pred ceEEeeCCCHHHHHHHHHhhCCCcccchhhccccceEEEEEc------------CHHHHHHHHHHHHhccCCceeeecch
Confidence 4799999999999999999998887 9999999999965 46799999999999999999999999
Q ss_pred ccCCCCCCCcceEEEE-ecc---CCCCceeEEEEEechhhHHHHHHHHHhhccCccccccccccCCCCCCCCCCcccccc
Q 006686 447 IATPKPNGYQSLHTTL-IPF---LYESMFRLEVQIRTEEMDLIAERGIAAHYSGRVFVTGLVGHARPNGRSPRGKTVCLN 522 (635)
Q Consensus 447 Ia~PK~nGYqSLHt~V-~~~---~~~~~~~vEIQIRT~~Mh~wAE~G~aah~~yK~~~~g~~~~~~~~~~~~~~~~~~~~ 522 (635)
|++||+|||||||++| +|. .++.+.++||||||..||.|||+||++||+|++... . .-...+.
T Consensus 111 I~~PK~nGYrSlH~~v~~p~~~~~g~~~~~vEIQIRT~~m~~wAe~eh~~~YK~~~~~~------------~-~~~~~l~ 177 (226)
T 2be3_A 111 ITHRKASGYRSYHVVVEYTVDTINGAKTILAEIQIRTLAMNFWATIEHSLNYKYQGDFP------------D-EIKKRLE 177 (226)
T ss_dssp TTTCCTTSCCCEEEEEEEEECCTTCCEEEEEEEEEEEHHHHHHHHHHHHHHHHHTTCCC------------H-HHHHHHH
T ss_pred hhcCCCCCceEEEEEEEcccccccCCCCcEEEEEEeeHHHHHHHHHhHHHHcCCcCCCc------------H-HHHHHHH
Confidence 9999999999999999 442 235678999999999999999999999999996320 0 0000000
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcCCChhhhHhhhhhhhcc
Q 006686 523 NANIALRISWLNAIREWQEEFVGNMTSREFVDTITRDLLG 562 (635)
Q Consensus 523 ~~~~~~~~~wl~~l~~~~~~~~~~~~~~ef~~~i~~dL~~ 562 (635)
.. -+....|.+++.+|+++.. ++.+|++.++.+|++
T Consensus 178 ~~-a~~~~~~d~~m~~i~~~i~---~~~~~~~~~~~~~~~ 213 (226)
T 2be3_A 178 IT-ARIAHQLDEEMGEIRDDIQ---EAQALFDPLSRKLND 213 (226)
T ss_dssp HH-HHHHHHHHHHHHTTHHHHH---HHHHHCCC-------
T ss_pred HH-HHHHHHHHHHHHHHHHHHh---hhHHHHHHhhHHHhh
Confidence 00 0124689999999999874 578999999999874
No 4
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=100.00 E-value=4.6e-35 Score=284.95 Aligned_cols=163 Identities=26% Similarity=0.370 Sum_probs=136.3
Q ss_pred hhhHHHHHHHHHHHHHhhcCCccc--cCCccchhHHHHHHHHH-hcCC-CHHHHHHHhhccccccCCCCCHHHHHHHhCh
Q 006686 143 PNELELVRRALMLAFEAHDGQKRR--SGEPFIIHPVEVARILG-ELEL-DWESIAAGLLHDTVEDTNVVTFERIEEEFGA 218 (635)
Q Consensus 143 ~~~~~~v~~A~~~A~~aH~gQ~Rk--sGePYi~Hpl~VA~iLa-~l~~-D~~tI~AALLHDvvEDT~~~T~e~I~~~FG~ 218 (635)
..|.+++.+|+.||.++|.||+|+ +|+|||.||++||.||+ ++|+ |.++++||||||+||||+ +|.++|++.||+
T Consensus 3 ~~d~~~l~~A~~~A~~~H~gQ~rk~~~G~pyi~Hpl~VA~ila~~l~~~D~~~i~AAlLHDvvEDt~-~t~e~i~~~FG~ 81 (179)
T 3nqw_A 3 TYPSAKFMECLQYAAFKHRQQRRKDPQETPYVNHVINVSTILSVEACITDEGVLMAALLHDVVEDTD-ASFEDVEKLFGP 81 (179)
T ss_dssp CCCCHHHHHHHHHHHHHSTTCBCSSSSCCBTHHHHHHHHHHHHTTTCCCCHHHHHHHHTTTHHHHSS-CCHHHHHHHHCH
T ss_pred cccHHHHHHHHHHHHHHhccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHhcCC-CCHHHHHHHHCH
Confidence 346788999999999999999998 59999999999999999 8998 999999999999999998 899999999999
Q ss_pred HHHHHHHhhhccccccccccccCCchhhhhhHHHHHHHHHhccCCceEEeeehhhhHhhhhhccCCCCcch-hhHHHHHH
Q 006686 219 TVRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQ-SSIATETL 297 (635)
Q Consensus 219 ~Va~LV~gvTkv~~l~~~~~~~~~~~~~~~qae~lRkmLlam~~DiRvvLVKLADRLhNmRtL~~~~~~kq-~~iA~ETl 297 (635)
+|+.+|+||||+..++... ....|.+++|+ .|+||++||||||+||||++..+|++.+ ..-+++.+
T Consensus 82 ~Va~lV~gvtk~~~~~~~~-------~~~~q~e~~r~------~d~rvvlIKLADRl~NmR~l~~~~~~~~~~~r~~~Y~ 148 (179)
T 3nqw_A 82 DVCGLVREVTDDKSLEKQE-------RKRLQIENAAK------SSCRAKLIKLADKLDNLRDLQVNTPTGWTQERRDQYF 148 (179)
T ss_dssp HHHHHHHHTCCCTTSCHHH-------HHHHHHHSSTT------SCHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhccccCHHH-------HHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHHhhCCcccccHHHHHHHH
Confidence 9999999999987654211 22345666664 7999999999999999999998877653 34467899
Q ss_pred HHHHHHHhhh--cHHHHHHHHhcc
Q 006686 298 QVFAPLAKLL--GMYQIKSELENL 319 (635)
Q Consensus 298 ~iyaPLA~rL--Gi~~ik~ELEDL 319 (635)
+.|.+++..| |-..+..+|.++
T Consensus 149 ~~~~~v~~~l~~~n~~l~~~~~~~ 172 (179)
T 3nqw_A 149 VWAKKVVDNLRGTNANLELKLDEI 172 (179)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCHHHHHHHHHH
Confidence 9999999887 333344444443
No 5
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=99.98 E-value=3e-33 Score=271.91 Aligned_cols=132 Identities=39% Similarity=0.567 Sum_probs=115.3
Q ss_pred hhHHHHHHHHHHHHHhhcCCcccc--CCccchhHHHHHHHH-HhcCC-CHHHHHHHhhccccccCCCCCHHHHHHHhChH
Q 006686 144 NELELVRRALMLAFEAHDGQKRRS--GEPFIIHPVEVARIL-GELEL-DWESIAAGLLHDTVEDTNVVTFERIEEEFGAT 219 (635)
Q Consensus 144 ~~~~~v~~A~~~A~~aH~gQ~Rks--GePYi~Hpl~VA~iL-a~l~~-D~~tI~AALLHDvvEDT~~~T~e~I~~~FG~~ 219 (635)
.|.+++.+|+.||.++|.||+|++ |+|||.||++||.|| .++|+ |.++++||||||+||||+ +|.++|++.||++
T Consensus 2 ~d~~~l~~A~~~A~~aH~gQ~rk~~~G~PYi~Hpl~VA~il~~~~~~~d~~~i~AALLHDvvEDt~-~t~e~i~~~FG~~ 80 (178)
T 3nr1_A 2 SEAAQLLEAADFAARKHRQQRRKDPEGTPYINHPIGVARILTHEAGITDIVVLQAALLHDTVEDTD-TTLDEVELHFGAQ 80 (178)
T ss_dssp CHHHHHHHHHHHHHHHTTTCBCSSTTCCBTTHHHHHHHHHHHHTSCCCCHHHHHHHHHTTHHHHSS-CCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcccCcCCCCCCCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhHHhcCC-CCHHHHHHHHCHH
Confidence 367889999999999999999986 999999999999999 68996 999999999999999998 8999999999999
Q ss_pred HHHHHHhhhccccccccccccCCchhhhhhHHHHHHHHHhccCCceEEeeehhhhHhhhhhccCCCCcch
Q 006686 220 VRRIVEGETKVSKLGKLKCKNENHSVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPPHKQ 289 (635)
Q Consensus 220 Va~LV~gvTkv~~l~~~~~~~~~~~~~~~qae~lRkmLlam~~DiRvvLVKLADRLhNmRtL~~~~~~kq 289 (635)
|+.+|++|||++.+.... ....|.+++| ..|+||++||||||+||||++..+|++.+
T Consensus 81 Va~lV~gvTk~~~~~~~~-------~~~~q~e~~~------~~d~rvvlIKLADRl~NmR~l~~~~~~~~ 137 (178)
T 3nr1_A 81 VRRLVEEVTDDKTLPKLE-------RKRLQVEQAP------HSSPGAKLVKLADKLYNLRDLNRCTPEGW 137 (178)
T ss_dssp HHHHHHHTCCCTTSCHHH-------HHHHHHHHGG------GSCHHHHHHHHHHHHHHHHHHHHCCCTTC
T ss_pred HHHHHHHHHhccccchhh-------HHHHHHHHHH------hCCchhHHHHHHHHHHHHHHhhhCCcccc
Confidence 999999999987654211 1233555543 58999999999999999999998887663
No 6
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=99.81 E-value=2.7e-20 Score=157.45 Aligned_cols=71 Identities=41% Similarity=0.774 Sum_probs=63.5
Q ss_pred hhccCCceeeCCCCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCCCccCCCCCEEEEEecCCcc
Q 006686 559 DLLGSRVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNVSF 629 (635)
Q Consensus 559 dL~~~~v~V~tPdG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL~~~L~~gd~VEIiT~~d~E 629 (635)
|||+++|+||+|+|++++||+|+|++||||+||+++|+++++|+|||++++|+++|++||+|||+|++.-|
T Consensus 2 ~l~~~~i~v~tP~G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVNG~~v~L~~~L~~gd~VeIit~~~~~ 72 (78)
T 3hvz_A 2 DLAPEEVFVFTPKGDVISLPIGSTVIDFAYAIHSAVGNRMIGAKVDGRIVPIDYKVKTGEIIDVLTTKELE 72 (78)
T ss_dssp ----CEEEEECTTSCEEEEETTCBHHHHHHHHCHHHHHTEEEEEETTEEECTTCBCCTTCBEEEEECC---
T ss_pred CCcCceEEEECCCCCEEEecCCCCHHHHHHHhhhhhhcceEEEEECCEEcCCCcccCCCCEEEEEccCccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999988755
No 7
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=99.48 E-value=2.4e-14 Score=123.00 Aligned_cols=72 Identities=18% Similarity=0.188 Sum_probs=69.3
Q ss_pred CCceeeCCCCceeecCC-CCcHHHHHHHhchhhhcceEEEEECCEecCCCccCCCCCEEEEEecCCccccccc
Q 006686 563 SRVFVFTPRGEIKNLPK-GATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNVSFSLTIA 634 (635)
Q Consensus 563 ~~v~V~tPdG~~~~lp~-GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL~~~L~~gd~VEIiT~~d~Egl~~~ 634 (635)
..|.|++|||+++++|. |+|+.|||+.||+.+++.+++|+|||+++||+++|++|+.|||+|++++||++++
T Consensus 10 ~~i~I~lpdG~~~~~~~~~~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~d~~ve~vt~~~~eg~~i~ 82 (88)
T 1wwt_A 10 KPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELLKFEDEEAQAVY 82 (88)
T ss_dssp CEEEEECTTSCEEEEETTTCCHHHHHHHSSTTTGGGCCCEEESSSEECSSSCCCSSEEEEECSSCCSCCSCSC
T ss_pred CCEEEEECCCCEEEcccCCCCHHHHHHHhhhccccceEEEEECCEEECCCcCcCCCCEEEEEeCCCHHHhhhe
Confidence 46889999999999998 9999999999999999999999999999999999999999999999999999985
No 8
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=99.38 E-value=8.7e-13 Score=108.83 Aligned_cols=66 Identities=44% Similarity=0.769 Sum_probs=63.1
Q ss_pred CceeeCCCCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCCCccCCCCCEEEEEecCCcc
Q 006686 564 RVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNVSF 629 (635)
Q Consensus 564 ~v~V~tPdG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL~~~L~~gd~VEIiT~~d~E 629 (635)
+|+|++|+|+.+++|.|+|+.|+|+.+++++++.+++|+|||+++||+++|++||.|||+|+.+.+
T Consensus 2 ~i~i~~p~g~~~~~~~g~T~~dla~~i~~~l~~~~vaa~vNg~lvdl~~~L~~~~~Veivt~~~~~ 67 (73)
T 2kmm_A 2 EVMVFTPKGEIKRLPQGATALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNSGDQVEVLSSKSLE 67 (73)
T ss_dssp CEEEECTTCCEEEECTTCBHHHHHHHHCSHHHHTEEEEEETTEECCTTCBCCSSSBEEEEECCCCC
T ss_pred eEEEEcCCCCEEEcCCCCcHHHHHHHHhhccccceEEEEECCEEeCCCcCcCCCCEEEEEECCCCc
Confidence 478999999999999999999999999999999999999999999999999999999999998765
No 9
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=99.21 E-value=1.7e-11 Score=106.26 Aligned_cols=67 Identities=27% Similarity=0.371 Sum_probs=60.4
Q ss_pred CCceeeC-CCCc------eeec-CCCCcHHHHHHHhchhhhcceEEEEE-------CCEecCCCccCCCCCEEEEEecCC
Q 006686 563 SRVFVFT-PRGE------IKNL-PKGATVVDYAYMIHTEIGNKMVAAKV-------NGNLVSPTHVLANAEVVEIITYNV 627 (635)
Q Consensus 563 ~~v~V~t-PdG~------~~~l-p~GaT~lD~A~~Ih~~lg~~~v~AkV-------NG~~vdL~~~L~~gd~VEIiT~~d 627 (635)
+.|+||| |.|. ++.| |.|+|+.|||++||+++++++..|.| ||+.|+++++|++||+|+|++...
T Consensus 10 ~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~~~~ 89 (93)
T 2eki_A 10 KLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKKSG 89 (93)
T ss_dssp CEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECEEECCS
T ss_pred CeEEEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEecccccCCCEECCCCcEecCCCEEEEEeCCC
Confidence 4688999 7775 4899 99999999999999999999998776 899999999999999999999876
Q ss_pred cc
Q 006686 628 SF 629 (635)
Q Consensus 628 ~E 629 (635)
++
T Consensus 90 ~~ 91 (93)
T 2eki_A 90 PS 91 (93)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 10
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=99.16 E-value=1.4e-11 Score=123.22 Aligned_cols=70 Identities=24% Similarity=0.348 Sum_probs=67.0
Q ss_pred CceeeCCCCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCCCccCCCCCEEEEEecCCcccccc
Q 006686 564 RVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNVSFSLTI 633 (635)
Q Consensus 564 ~v~V~tPdG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL~~~L~~gd~VEIiT~~d~Egl~~ 633 (635)
+|.|++|||+++++|.|+|+.|+|+.||+++++.+++|+|||+++||+++|++|+.|||+|+++++|+.+
T Consensus 1 ~i~I~~p~G~~~~~~~g~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~~~~ve~it~~~~~g~~~ 70 (224)
T 1tke_A 1 MPVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAKDEEGLEI 70 (224)
T ss_dssp CCEEECTTSCEEECSSCBCHHHHHHHHCHHHHHHCCEEEETTEEEETTCCBCSCEEEEEECTTSHHHHHH
T ss_pred CeEEEeCCCCEEEecCCCCHHHHHHHHhhhcccceEEEEECCEEeccceEcCCCCeEEEEecCchhHHHH
Confidence 3679999999999999999999999999999999999999999999999999999999999999998865
No 11
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=98.52 E-value=3e-08 Score=113.37 Aligned_cols=69 Identities=25% Similarity=0.361 Sum_probs=66.6
Q ss_pred ceeeCCCCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCCCccCCCCCEEEEEecCCcccccc
Q 006686 565 VFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNVSFSLTI 633 (635)
Q Consensus 565 v~V~tPdG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL~~~L~~gd~VEIiT~~d~Egl~~ 633 (635)
|.|.+|||+.++++.|+|+.|+|..|++.+++.+++|+|||+++||+++|..|+.|+++|++|+||+++
T Consensus 2 ~~~~~~d~~~~~~~~~~t~~~~a~~i~~~~~~~~~~~~vng~~~dl~~~l~~d~~~~~~~~~~~~~~~~ 70 (642)
T 1qf6_A 2 PVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAKDEEGLEI 70 (642)
T ss_dssp CEEECTTSCEEECSSCBCHHHHHHHHCHHHHHHCSEEEETTEEEETTSCBCSCEECCEECTTSHHHHHH
T ss_pred ceEEcCCCCeEEecCCCCHHHHHHHhchhhhhheEEEEECCEEeccccccCCCceEEEeecCcHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999999999999875
No 12
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.49 E-value=5.5e-08 Score=105.11 Aligned_cols=64 Identities=23% Similarity=0.360 Sum_probs=59.9
Q ss_pred CCceeeC---------CCC----ceeecCCCCcHHHHHHHhchhhhcceEEE--EECCEecCCCccCCCCCEEEEEecC
Q 006686 563 SRVFVFT---------PRG----EIKNLPKGATVVDYAYMIHTEIGNKMVAA--KVNGNLVSPTHVLANAEVVEIITYN 626 (635)
Q Consensus 563 ~~v~V~t---------PdG----~~~~lp~GaT~lD~A~~Ih~~lg~~~v~A--kVNG~~vdL~~~L~~gd~VEIiT~~ 626 (635)
+.|+||| |+| +.+.+|.|+|+.|||+.||+++++.+++| ++||+.++++|+|++||+|+|+|.+
T Consensus 318 ~li~vft~~~~~~~~~~~g~~~~~~~~l~~G~t~~d~a~~iH~d~~~~f~~a~~~~~~~~~g~~~~l~dgDvv~i~~~~ 396 (397)
T 1wxq_A 318 KLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYAINARTKRRVGEDYELQFNDIVKIVSVT 396 (397)
T ss_dssp CEEEEEEESCC-----CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTEEEEEETTTCSBCCTTCCCCTTEEEEEEEC-
T ss_pred CCeEEEeecccccccCCcCcccceeEEeCCCCCHHHHHHHHhHHHHhhhhhhHHhcCCEEcCCCccccCCCEEEEEeCC
Confidence 5788999 889 89999999999999999999999999999 8899999999999999999999964
No 13
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=98.42 E-value=6.6e-08 Score=110.56 Aligned_cols=70 Identities=33% Similarity=0.412 Sum_probs=66.7
Q ss_pred CceeeCCCCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCCCccCCCCCEEEEEecCCcccccc
Q 006686 564 RVFVFTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITYNVSFSLTI 633 (635)
Q Consensus 564 ~v~V~tPdG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL~~~L~~gd~VEIiT~~d~Egl~~ 633 (635)
+|.|..|||+.+++|.|+|+.|+|..|++.+++.+++|+|||+++||+++|..++.|+++|.+|++|+.+
T Consensus 3 ~~~i~~~dg~~~~~~~g~t~~~ia~~~~~~~~~~~v~~~vng~~~dl~~~l~~d~~v~~~~~~~~~g~~~ 72 (645)
T 1nyr_A 3 QINIQFPDGNKKAFDKGTTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEIVTPGSEEALEV 72 (645)
T ss_dssp -CBBCCTTSCCCBCCTTCCHHHHHHTTCHHHHHHCCEEEETTEEECTTSCCCSCBCCCEECTTSHHHHHH
T ss_pred ceEEEeCCCCEEEecCCCCHHHHHHHhhhhcccCeEEEEECCEEEeCCcccCCCCeEEEeeccchhHHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999998865
No 14
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=97.18 E-value=0.00045 Score=55.70 Aligned_cols=53 Identities=13% Similarity=0.222 Sum_probs=46.4
Q ss_pred CCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCC----CccCCCCCEEEEEec
Q 006686 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSP----THVLANAEVVEIITY 625 (635)
Q Consensus 571 dG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL----~~~L~~gd~VEIiT~ 625 (635)
+|+.+++|.|+|+.|+...+. +....++.-|||+.++. +++|++||.|+|+++
T Consensus 6 Ng~~~~~~~~~tv~~ll~~l~--~~~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 6 NDQAMQCAAGQTVHELLEQLD--QRQAGAALAINQQIVPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_dssp SSCEECCCTTCCHHHHHHHHT--CCCSSEEEEETTEEECHHHHTTCCCCTTEEECEEES
T ss_pred CCEEEEcCCCCcHHHHHHHcC--CCCCCEEEEECCEECCchhcCCcCCCCCCEEEEEee
Confidence 789999999999999988875 34566789999999997 789999999999985
No 15
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=97.14 E-value=0.00058 Score=58.59 Aligned_cols=53 Identities=23% Similarity=0.378 Sum_probs=46.0
Q ss_pred CCceeecCCC-CcHHHHHHHhchhhhcceEEEEECCEecCC----CccCCCCCEEEEEec
Q 006686 571 RGEIKNLPKG-ATVVDYAYMIHTEIGNKMVAAKVNGNLVSP----THVLANAEVVEIITY 625 (635)
Q Consensus 571 dG~~~~lp~G-aT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL----~~~L~~gd~VEIiT~ 625 (635)
+|+.+++|.| +|+.|+...+. +....+++-|||+.++. +++|++||.|+|+++
T Consensus 26 NGe~~el~~~~~Tv~dLL~~L~--~~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~~ 83 (87)
T 1tyg_B 26 NGKDVKWKKDTGTIQDLLASYQ--LENKIVIVERNKEIIGKERYHEVELCDRDVIEIVHF 83 (87)
T ss_dssp TTEEECCSSSCCBHHHHHHHTT--CTTSCCEEEETTEEECGGGTTTSBCCSSSEEEEEEE
T ss_pred CCEEEECCCCCCcHHHHHHHhC--CCCCCEEEEECCEECChhhcCCcCCCCCCEEEEEcc
Confidence 7899999998 99999998885 44556778999999997 679999999999985
No 16
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.97 E-value=0.00054 Score=56.95 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=41.9
Q ss_pred ceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCCCccCCCCCEEEEEec
Q 006686 573 EIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (635)
Q Consensus 573 ~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL~~~L~~gd~VEIiT~ 625 (635)
..+++|.|+|+.|+...+. +....+.+.+||+.++.+..++ ||.|||+++
T Consensus 13 ~~~ev~~g~Tv~dLL~~Lg--l~~~~VvV~vNG~~v~~d~~l~-GD~VeIv~~ 62 (74)
T 2l32_A 13 SEVAVDDDGTYADLVRAVD--LSPHEVTVLVDGRPVPEDQSVE-VDRVKVLRL 62 (74)
T ss_dssp EEEECSTTCSHHHHHHTTC--CCSSCCCEECCCCCCCTTSSSC-CCCEEECSS
T ss_pred eeEEcCCCCcHHHHHHHcC--CCcceEEEEECCEECCHHHCCC-CCEEEEEEe
Confidence 3489999999999998876 3334457999999999999886 999999886
No 17
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=96.93 E-value=0.00034 Score=58.25 Aligned_cols=56 Identities=21% Similarity=0.218 Sum_probs=47.3
Q ss_pred eCCCCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCCCccCCCCCEEEEEec
Q 006686 568 FTPRGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (635)
Q Consensus 568 ~tPdG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL~~~L~~gd~VEIiT~ 625 (635)
...+|..+++|.|+|+.|+...+.-. ...+++-|||+.++.+++|++||.|+|+++
T Consensus 18 ~~~n~~~~~~~~~~Tv~dLl~~L~~~--~~~v~VavNg~~v~~~~~L~dGD~V~i~pp 73 (77)
T 1rws_A 18 GRNIEKEIEWREGMKVRDILRAVGFN--TESAIAKVNGKVVLEDDEVKDGDFVEVIPV 73 (77)
T ss_dssp TCCCCCCCCCCSSCCHHHHHHTTTCS--SCSSCEEETTEEECSSSCCCSSCCCBCSCC
T ss_pred cccCCEEEECCCCCcHHHHHHHhCCC--CcCEEEEECCEECCCCCCcCCCCEEEEEcc
Confidence 34578899999999999999887633 345578899999999999999999999875
No 18
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=96.90 E-value=0.0013 Score=53.66 Aligned_cols=49 Identities=16% Similarity=0.197 Sum_probs=42.7
Q ss_pred eecCCCCcHHHHHHHhchhhhcceEEEEECCEecCCCccCCCCCEEEEEec
Q 006686 575 KNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (635)
Q Consensus 575 ~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL~~~L~~gd~VEIiT~ 625 (635)
+++|.|.|+.|+...+.- ....+++-+||+.++.+.+|++||.|+|+++
T Consensus 18 ~~~~~~~tv~~Ll~~l~~--~~~~v~vavN~~~v~~~~~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 18 LESGAPRRIKDVLGELEI--PIETVVVKKNGQIVIDEEEIFDGDIIEVIRV 66 (70)
T ss_dssp EEESSCCBHHHHHHHTTC--CTTTEEEEETTEECCTTSBCCTTCEEEEEEC
T ss_pred EECCCCCcHHHHHHHhCC--CCCCEEEEECCEECCCcccCCCCCEEEEEec
Confidence 999999999999888743 3445678899999999999999999999985
No 19
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=96.90 E-value=0.0015 Score=52.42 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=44.7
Q ss_pred CCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCCC----ccCCCCCEEEEEec
Q 006686 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT----HVLANAEVVEIITY 625 (635)
Q Consensus 571 dG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL~----~~L~~gd~VEIiT~ 625 (635)
+|+.+++ .|+|+.|+...+. +....++.-|||+.++.+ ++|++||.|+|+++
T Consensus 5 Ng~~~~~-~~~tv~~ll~~l~--~~~~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 5 NGEPRPL-EGKTLKEVLEEMG--VELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp TTEEECC-TTCCHHHHHHHHT--BCGGGEEEEETTEEEEGGGCCCCCCCTTCEEEEEEC
T ss_pred CCEEEEc-CCCcHHHHHHHcC--CCCCcEEEEECCEECCccccCCcCCCCCCEEEEEee
Confidence 7889999 8999999988875 334566788999999976 89999999999985
No 20
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=96.75 E-value=0.0008 Score=56.47 Aligned_cols=53 Identities=13% Similarity=0.378 Sum_probs=45.5
Q ss_pred CCceeecC--CCCcHHHHHHHhchhhh-cceEEEEECCEecCCC----ccCCCCCEEEEEec
Q 006686 571 RGEIKNLP--KGATVVDYAYMIHTEIG-NKMVAAKVNGNLVSPT----HVLANAEVVEIITY 625 (635)
Q Consensus 571 dG~~~~lp--~GaT~lD~A~~Ih~~lg-~~~v~AkVNG~~vdL~----~~L~~gd~VEIiT~ 625 (635)
+|+.++++ .|+|+.|+...+. +. ...+++-+||+.++-+ +.|++||.|||+++
T Consensus 6 NGe~~e~~~~~~~Tl~~LL~~l~--~~~~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~~ 65 (78)
T 2k5p_A 6 NGKPSTVDGAESLNVTELLSALK--VAQAEYVTVELNGEVLEREAFDATTVKDGDAVEFLYF 65 (78)
T ss_dssp TTEEEECSSCSCEEHHHHHHHHT--CSCTTTCCEEETTEECCTTHHHHCEECSSBCEEECCC
T ss_pred CCEEEEcCCCCCCcHHHHHHHcC--CCCCCcEEEEECCEECChHHcCcccCCCCCEEEEEee
Confidence 68999999 9999999988775 33 3456788999999997 79999999999986
No 21
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=96.68 E-value=0.0017 Score=53.70 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=44.8
Q ss_pred CCceeecCCCCcHHHHHHHhchhhhcceEEEEECCEecCCC----ccCCCCCEEEEEecC
Q 006686 571 RGEIKNLPKGATVVDYAYMIHTEIGNKMVAAKVNGNLVSPT----HVLANAEVVEIITYN 626 (635)
Q Consensus 571 dG~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVNG~~vdL~----~~L~~gd~VEIiT~~ 626 (635)
+|+.+++ .|.|+.|+...+. +....+++-+||+.++-+ ++|++||.|||+++=
T Consensus 6 NG~~~e~-~~~Tl~~LL~~l~--~~~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~~V 62 (73)
T 2kl0_A 6 NGEQREV-QSASVAALMTELD--CTGGHFAVALNYDVVPRGKWDETPVTAGDEIEILTPR 62 (73)
T ss_dssp TTEEECC-CCSBHHHHHHHTT--CCSSSCEEEESSSEECHHHHTTCBCCTTCEEEEECCC
T ss_pred CCEEEEc-CCCcHHHHHHHcC--CCCCcEEEEECCEECChHHcCcccCCCCCEEEEEccc
Confidence 5889999 8999999988765 334556899999999984 799999999999863
No 22
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=96.56 E-value=0.0012 Score=57.66 Aligned_cols=52 Identities=19% Similarity=0.110 Sum_probs=41.6
Q ss_pred eeecCCCCcHHHHHHHhc-----hhhhcceEEEEECCEecCCCccCCCCCEEEEEec
Q 006686 574 IKNLPKGATVVDYAYMIH-----TEIGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (635)
Q Consensus 574 ~~~lp~GaT~lD~A~~Ih-----~~lg~~~v~AkVNG~~vdL~~~L~~gd~VEIiT~ 625 (635)
..++|.|+|+.|+..+.+ +++.-..++.-|||+.++++++|++||.|||+.+
T Consensus 29 ~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d~~L~dGDRVEIyrp 85 (97)
T 2hj1_A 29 SFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLTDVLKEGDRIEIYRP 85 (97)
T ss_dssp EEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTTCBCCTTCEEEECCC
T ss_pred EEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCCccCCCCCEEEEEec
Confidence 568899999999987764 2333224566799999999999999999999765
No 23
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.0048 Score=66.13 Aligned_cols=62 Identities=29% Similarity=0.531 Sum_probs=49.3
Q ss_pred CCceeeC-CCCceee------cCCC-CcHHHHHHHhchhhhcceEEEEE-------CCEecCCCccCCCCCEEEEEe
Q 006686 563 SRVFVFT-PRGEIKN------LPKG-ATVVDYAYMIHTEIGNKMVAAKV-------NGNLVSPTHVLANAEVVEIIT 624 (635)
Q Consensus 563 ~~v~V~t-PdG~~~~------lp~G-aT~lD~A~~Ih~~lg~~~v~AkV-------NG~~vdL~~~L~~gd~VEIiT 624 (635)
+-+.+|| +.|++.. +++| +|+.|||..||+++.+....|.| +|+.+..+|.|++||+|+|++
T Consensus 299 ~Li~~fT~g~~E~rawt~~~~~~a~~at~~D~a~~ih~d~~~~F~~a~v~Gs~~K~~~r~eGkdyvv~DGDVi~iv~ 375 (376)
T 4a9a_A 299 NLVRIYTKPKGQIPDFTDPVVLRSDRCSVKDFCNQIHKSLVDDFRNALVYGSSVKHQPQYVGLSHILEDEDVVTILK 375 (376)
T ss_dssp CCEEEEECCSSSCCCSSSCEEEBTTBCBHHHHHHHHCGGGGGGEEEEEEESTTSSSSSEEECTTCBCCTTCEEEEEE
T ss_pred CCcEEEeCCCCCcCCCCccccccCCCCcHHHHHHHHHHHHHHhhhHhhhcCcccCCCCCccCCCcEEcCCCEEEEEe
Confidence 3566676 3344333 4455 89999999999999999888876 458899999999999999997
No 24
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=96.14 E-value=0.0047 Score=50.73 Aligned_cols=53 Identities=23% Similarity=0.306 Sum_probs=41.3
Q ss_pred ceeecCCCCcHHHHHHHhchh---hhcceEEEEECCEecCCCccCCCCCEEEEEec
Q 006686 573 EIKNLPKGATVVDYAYMIHTE---IGNKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (635)
Q Consensus 573 ~~~~lp~GaT~lD~A~~Ih~~---lg~~~v~AkVNG~~vdL~~~L~~gd~VEIiT~ 625 (635)
..+++|.|+|+.|+...+... +..-.+..-|||+.++.+++|++||.|+|+.+
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~p~~~~v~~~v~vNg~~v~~~~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 18 EDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPP 73 (77)
T ss_dssp EECCCSSCEEHHHHHHHHHHHCGGGTTCCCEEEETTEEECTTSEECTTCEEEEECS
T ss_pred EEEECCCCCCHHHHHHHHHHHCcchhcceEEEEECCEECCCCCCcCCCCEEEEECC
Confidence 356778899999998877433 32211267899999999999999999999875
No 25
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=95.93 E-value=0.0091 Score=51.69 Aligned_cols=53 Identities=32% Similarity=0.364 Sum_probs=42.5
Q ss_pred ceeecCCCCcHHHHHHHhch---hhh----------cceEEEEECCEecCCCccCCCCCEEEEEec
Q 006686 573 EIKNLPKGATVVDYAYMIHT---EIG----------NKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (635)
Q Consensus 573 ~~~~lp~GaT~lD~A~~Ih~---~lg----------~~~v~AkVNG~~vdL~~~L~~gd~VEIiT~ 625 (635)
..+++|.|+|+.|+...+.. ++. ...+..-|||+.++++++|++||.|+|+.+
T Consensus 29 ~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~~L~dGDeV~i~pp 94 (98)
T 1vjk_A 29 EEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDGDVVGVFPP 94 (98)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCBCCTTCEEEEESC
T ss_pred EEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCCCCCCCCEEEEECC
Confidence 46677889999998877743 332 244678899999999999999999999874
No 26
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=95.75 E-value=0.017 Score=48.75 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=42.4
Q ss_pred ceeecCCCCcHHHHHHHh---chhhhc----------ceEEEEECCEecCCCccCCCCCEEEEEec
Q 006686 573 EIKNLPKGATVVDYAYMI---HTEIGN----------KMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (635)
Q Consensus 573 ~~~~lp~GaT~lD~A~~I---h~~lg~----------~~v~AkVNG~~vdL~~~L~~gd~VEIiT~ 625 (635)
..+++|.|+|+.|+...+ ++++.. ..+..-|||+.++++++|++||.|.|+.+
T Consensus 20 ~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~~l~~gDeV~i~Pp 85 (89)
T 3po0_A 20 VRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEATAAGDELALFPP 85 (89)
T ss_dssp EEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTSBCCTTCEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCcccCCCCEEEEECC
Confidence 356788899999998777 454432 12577899999999999999999999874
No 27
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=95.14 E-value=0.033 Score=45.90 Aligned_cols=48 Identities=23% Similarity=0.189 Sum_probs=37.7
Q ss_pred CCCCcHHHHHHHhch---hhh----cceEEEEECCEecCCCccCCCCCEEEEEec
Q 006686 578 PKGATVVDYAYMIHT---EIG----NKMVAAKVNGNLVSPTHVLANAEVVEIITY 625 (635)
Q Consensus 578 p~GaT~lD~A~~Ih~---~lg----~~~v~AkVNG~~vdL~~~L~~gd~VEIiT~ 625 (635)
+.|+|+.|+...+.. ++. ...+..-|||+.++++++|++||.|.|+.+
T Consensus 23 ~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~~~~l~~gD~V~i~Pp 77 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPP 77 (81)
T ss_dssp SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCTTCBCCTTCEEEEECC
T ss_pred CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCCCCCCCCCCEEEEeCC
Confidence 578899998777643 222 223568899999999999999999999874
No 28
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.72 E-value=0.029 Score=59.86 Aligned_cols=62 Identities=18% Similarity=0.294 Sum_probs=51.7
Q ss_pred CCceeeC--CCC-ceeecCCCCcHHHHHHHhchhhhcceEEEEE-----------------CC--EecCCCccCCCCCEE
Q 006686 563 SRVFVFT--PRG-EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-----------------NG--NLVSPTHVLANAEVV 620 (635)
Q Consensus 563 ~~v~V~t--PdG-~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkV-----------------NG--~~vdL~~~L~~gd~V 620 (635)
+-|.+|| |+- +...+++|+|+.|+|..||+++.+..+.|.| -| +...-+|.+++||+|
T Consensus 283 ~li~~ft~g~~e~~aw~i~~g~ta~~~a~~IH~d~~~~fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdi~ 362 (368)
T 2dby_A 283 DLLTFFTAGEKEVRAWTVRRGTKAPRAAGEIHSDMERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGDVI 362 (368)
T ss_dssp TEEEEEEESSSCEEEEEEETTCBHHHHHHHHCHHHHHSCCEEEEEEHHHHHHHTSHHHHHHTTCCEEECTTCBCCTTEEE
T ss_pred CCEEEECCCCCCcceEEecCCCcHHHHHHhhHHHHHhhCeEEEEccHHHHHHhCCHHHHHhcCCccccCCCceecCCCEE
Confidence 3566777 332 5788899999999999999999999888887 15 777999999999999
Q ss_pred EEEe
Q 006686 621 EIIT 624 (635)
Q Consensus 621 EIiT 624 (635)
+|..
T Consensus 363 ~~~f 366 (368)
T 2dby_A 363 YVLF 366 (368)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9853
No 29
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=94.09 E-value=0.068 Score=44.84 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=41.3
Q ss_pred ceeecCCCCcHHHHHHHhchhh---hc----------ceEEEEECCEecC----CCccCCCCCEEEEEec
Q 006686 573 EIKNLPKGATVVDYAYMIHTEI---GN----------KMVAAKVNGNLVS----PTHVLANAEVVEIITY 625 (635)
Q Consensus 573 ~~~~lp~GaT~lD~A~~Ih~~l---g~----------~~v~AkVNG~~vd----L~~~L~~gd~VEIiT~ 625 (635)
+..+++.|+|+.|+...+.... .. ..+.+-|||+.++ ++++|++||.|+|+.+
T Consensus 17 ~~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~~~~~l~~gD~V~i~pp 86 (90)
T 2g1e_A 17 KEETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKGLDTEIKDDDKIDLFPP 86 (90)
T ss_dssp SEEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCSSSCBCCTTCEEEEECC
T ss_pred CEEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCCCCcCCCCCCEEEEeCC
Confidence 3567777899999888775432 11 3457889999997 7999999999999875
No 30
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=93.18 E-value=0.063 Score=57.24 Aligned_cols=62 Identities=23% Similarity=0.297 Sum_probs=51.7
Q ss_pred CCceeeC--CCC-ceeecCCCCcHHHHHHHhchhhhcceEEEEE-----------------CC--EecCCCccCCCCCEE
Q 006686 563 SRVFVFT--PRG-EIKNLPKGATVVDYAYMIHTEIGNKMVAAKV-----------------NG--NLVSPTHVLANAEVV 620 (635)
Q Consensus 563 ~~v~V~t--PdG-~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkV-----------------NG--~~vdL~~~L~~gd~V 620 (635)
+-+.+|| |+- +...+++|+|+.|+|..||+++.+..+.|.| -| +...-+|.+++||+|
T Consensus 278 ~li~~ft~g~~e~raw~i~~G~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~~~~~~~k~~g~~r~egk~y~v~dgDii 357 (363)
T 1jal_A 278 NLQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVM 357 (363)
T ss_dssp TEEEEEEECSSEEEEEEEETTCBHHHHHHTTCTTHHHHCCEEEEECHHHHHHTTSHHHHHHTTCCEEECTTCBCCTTCEE
T ss_pred CCEEEECCCCCCcceeEecCCCcHHHHHHhhHHHHHhccEEEEEcCHHHHHHhCCHHHHHhcCCeeccCCccEecCCCEE
Confidence 3566777 332 5788899999999999999999999988888 15 777999999999999
Q ss_pred EEEe
Q 006686 621 EIIT 624 (635)
Q Consensus 621 EIiT 624 (635)
+|..
T Consensus 358 ~f~f 361 (363)
T 1jal_A 358 HFRF 361 (363)
T ss_dssp EEES
T ss_pred EEEe
Confidence 9853
No 31
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=92.81 E-value=0.11 Score=56.10 Aligned_cols=64 Identities=19% Similarity=0.284 Sum_probs=53.0
Q ss_pred CCceeeC--CCC-ceeecCCCCcHHHHHHHhchhhhcceEEEEEC-----------------C--EecCCCccCCCCCEE
Q 006686 563 SRVFVFT--PRG-EIKNLPKGATVVDYAYMIHTEIGNKMVAAKVN-----------------G--NLVSPTHVLANAEVV 620 (635)
Q Consensus 563 ~~v~V~t--PdG-~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVN-----------------G--~~vdL~~~L~~gd~V 620 (635)
+-+.+|| ||- +...++.|+|+.|+|..||+++.+..+.|.|- | +...-+|.+++||+|
T Consensus 304 ~li~~fT~g~~evrawti~~g~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~Gk~y~v~dgDii 383 (396)
T 2ohf_A 304 QLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDII 383 (396)
T ss_dssp TEEEEEEESSSEEEEEEEETTCBHHHHHHTTCTHHHHHEEEEEEECHHHHHHHCSHHHHHHTTCCEEECTTCBCCTTCEE
T ss_pred CCEEEECCCCCcceeEEecCCCcHHHHHhhhHHHHHhcceEEEEccHHHHHHhCCHHHHHhcCcccccCCCceeeCCCEE
Confidence 3566777 442 57788999999999999999999999888863 3 899999999999999
Q ss_pred EEEecC
Q 006686 621 EIITYN 626 (635)
Q Consensus 621 EIiT~~ 626 (635)
+|-..-
T Consensus 384 ~f~fn~ 389 (396)
T 2ohf_A 384 FFKFNT 389 (396)
T ss_dssp EEEEC-
T ss_pred EEEecC
Confidence 997644
No 32
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=92.34 E-value=0.15 Score=41.63 Aligned_cols=52 Identities=13% Similarity=0.231 Sum_probs=40.6
Q ss_pred ceeecCCCCcHHHHHHHhchh--hhc--ceEEEEECCEe-cCCCccCCCCCEEEEEec
Q 006686 573 EIKNLPKGATVVDYAYMIHTE--IGN--KMVAAKVNGNL-VSPTHVLANAEVVEIITY 625 (635)
Q Consensus 573 ~~~~lp~GaT~lD~A~~Ih~~--lg~--~~v~AkVNG~~-vdL~~~L~~gd~VEIiT~ 625 (635)
+.+++ .|+|+.|+...+... +.. ..+..-|||+. .+.+++|++||.|.|+.+
T Consensus 14 ~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~Pp 70 (74)
T 3rpf_C 14 ENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLLPP 70 (74)
T ss_dssp CCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEECC
T ss_pred eEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEECC
Confidence 45677 789999998877543 221 34678899999 788999999999999875
No 33
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=92.00 E-value=0.24 Score=41.92 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=38.9
Q ss_pred eeecCCCCcHHHHHHHhc---hhhhc------------ceEEEEECCEecC----CCccCCCCCEEEEEec
Q 006686 574 IKNLPKGATVVDYAYMIH---TEIGN------------KMVAAKVNGNLVS----PTHVLANAEVVEIITY 625 (635)
Q Consensus 574 ~~~lp~GaT~lD~A~~Ih---~~lg~------------~~v~AkVNG~~vd----L~~~L~~gd~VEIiT~ 625 (635)
.++ +.|+|+.|+...+. +.+.. ..+..-|||+.++ ++++|++||.|.|+.+
T Consensus 20 ~~~-~~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~~~~L~~gDeV~i~Pp 89 (93)
T 3dwg_C 20 SVS-ASGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTILPA 89 (93)
T ss_dssp EEE-ECCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEEEC
T ss_pred EEe-cCCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCCCcCCCCCCEEEEECC
Confidence 355 46899999887774 33321 1377889999998 6999999999999875
No 34
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=91.56 E-value=0.21 Score=43.19 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=38.9
Q ss_pred eeecCCCCcHHHHHHHhc---hhhhcc---------eE-------EEEECCEec----CCCccCCCCCEEEEEec
Q 006686 574 IKNLPKGATVVDYAYMIH---TEIGNK---------MV-------AAKVNGNLV----SPTHVLANAEVVEIITY 625 (635)
Q Consensus 574 ~~~lp~GaT~lD~A~~Ih---~~lg~~---------~v-------~AkVNG~~v----dL~~~L~~gd~VEIiT~ 625 (635)
..+++ |+|+.|+...+. +.+... .+ ..-|||+.+ +++++|++||.|+|+.+
T Consensus 22 ~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~~~~~L~~gD~V~i~pp 95 (99)
T 2l52_A 22 ELPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEGLETLLKDSDEIGILPP 95 (99)
T ss_dssp EEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTSTTSCCCTTEEEEEECC
T ss_pred eEEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCCCCCCCCCCCEEEEECC
Confidence 45666 789999877763 333332 24 788999999 78999999999999874
No 35
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=89.09 E-value=0.2 Score=53.93 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=49.6
Q ss_pred CCceeeCC--CC-ceeecCCCCcHHHHHHHhchhhhcceEEEEEC-----------------C--EecCCCccCCCCCEE
Q 006686 563 SRVFVFTP--RG-EIKNLPKGATVVDYAYMIHTEIGNKMVAAKVN-----------------G--NLVSPTHVLANAEVV 620 (635)
Q Consensus 563 ~~v~V~tP--dG-~~~~lp~GaT~lD~A~~Ih~~lg~~~v~AkVN-----------------G--~~vdL~~~L~~gd~V 620 (635)
+-+.+||- +. +...+++|+|+.++|+.||+++.+..+.|.|= | +...-+|.+++||++
T Consensus 306 ~l~~~ft~g~~e~rawti~~G~~a~~aag~IH~d~~~gfi~ae~~~~~d~~~~g~~~~~k~~g~~r~~gk~y~v~dgdv~ 385 (392)
T 1ni3_A 306 NLINYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMESGDIA 385 (392)
T ss_dssp TEEEEEECCSSEEEEEEEETTCBHHHHHHHHCHHHHHTCSEEEEECHHHHHHHTSHHHHHHTTCSCEEETTCBCCTTCEE
T ss_pred CCEEEECCCCCcceeEEeCCCCcHHHHccccchhhhhccEEEEECCHHHHHHcCCHHHHHHcCCccccCCceeeeCCCEE
Confidence 45667772 22 57888999999999999999999998888775 4 346778999999999
Q ss_pred EEE
Q 006686 621 EII 623 (635)
Q Consensus 621 EIi 623 (635)
.|-
T Consensus 386 ~f~ 388 (392)
T 1ni3_A 386 HWK 388 (392)
T ss_dssp ECC
T ss_pred EEE
Confidence 874
No 36
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=87.02 E-value=1.1 Score=44.36 Aligned_cols=54 Identities=15% Similarity=0.071 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhhcCCccccCCccchhHHHHHHHHH----hcCCCHHH-HHHHhhccccc
Q 006686 146 LELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILG----ELELDWES-IAAGLLHDTVE 202 (635)
Q Consensus 146 ~~~v~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa----~l~~D~~t-I~AALLHDvvE 202 (635)
.+++.++.+|+.+.+.+. .+.--+.|..+|+.+.. ..+.|.+. .+||||||+..
T Consensus 4 ~~~i~~~~~~v~~~l~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AalLHDig~ 62 (223)
T 3dto_A 4 QAILQSAEAWVKKQLMDE---YSGHDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLID 62 (223)
T ss_dssp HHHHHHHHHHHHHTTTTC-------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHhhcC---CCCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccc
Confidence 356888999998887654 12233689999977653 34678764 88999999983
No 37
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=86.38 E-value=0.88 Score=43.22 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=40.1
Q ss_pred ceeecCCCCcHHHHHHHhc---hhhhc---------ceEEEEECCEecCC----CccCCCCCEEEEEec
Q 006686 573 EIKNLPKGATVVDYAYMIH---TEIGN---------KMVAAKVNGNLVSP----THVLANAEVVEIITY 625 (635)
Q Consensus 573 ~~~~lp~GaT~lD~A~~Ih---~~lg~---------~~v~AkVNG~~vdL----~~~L~~gd~VEIiT~ 625 (635)
+..+++. +|+.|+...+. +.+.. ..+..-|||+.++. +++|++||.|+|+.+
T Consensus 16 ~~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~~dt~L~dGDeVai~Pp 83 (168)
T 1v8c_A 16 SQLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFPP 83 (168)
T ss_dssp SEEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTGGGCBCCTTCEEEEECS
T ss_pred CeEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCCCccCCCCCCEEEEECc
Confidence 3556664 89999877773 33332 34678899999998 899999999999976
No 38
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=84.06 E-value=1.4 Score=42.83 Aligned_cols=54 Identities=19% Similarity=0.072 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhhcCCccccCCccchhHHHHHHHHHh----cCCCHHH-HHHHhhcccccc
Q 006686 147 ELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGE----LELDWES-IAAGLLHDTVED 203 (635)
Q Consensus 147 ~~v~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa~----l~~D~~t-I~AALLHDvvED 203 (635)
+++.++.++......+. ...--+.|.+.|+.+... .+.|.+. .+||||||+.-.
T Consensus 5 ~li~~~~~~v~~~~~~~---~~~H~~~H~~rV~~~a~~ia~~~~~d~~~v~~AAlLHDig~~ 63 (209)
T 3b57_A 5 EIILSAKNWMHSHFENE---TTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDI 63 (209)
T ss_dssp HHHHHHHHHHHTTC---------CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHHHHHHHHhcC---CCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCcc
Confidence 45667777776665532 112226899999887643 3678764 799999999743
No 39
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=83.11 E-value=2.2 Score=36.56 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=37.1
Q ss_pred eecC--CCCcHHHHHHHhchhh-------------h--cceEEEEECCEecC----CCccCCCCCEEEEEec
Q 006686 575 KNLP--KGATVVDYAYMIHTEI-------------G--NKMVAAKVNGNLVS----PTHVLANAEVVEIITY 625 (635)
Q Consensus 575 ~~lp--~GaT~lD~A~~Ih~~l-------------g--~~~v~AkVNG~~vd----L~~~L~~gd~VEIiT~ 625 (635)
+++| .|+|+.|+...+.... | +..+-.-|||+.+. ++++|++||.|.|+.+
T Consensus 24 ~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~~L~dgDeVa~~Pp 95 (99)
T 2qjl_A 24 IKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTST 95 (99)
T ss_dssp EEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEEEC
T ss_pred EecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCCcCcCCCCEEEEECC
Confidence 4556 7899999877764332 1 01245889999764 7899999999999864
No 40
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=72.55 E-value=6.7 Score=34.79 Aligned_cols=51 Identities=12% Similarity=0.108 Sum_probs=38.1
Q ss_pred eecC---CCCcHHHHHHHhchhh-----------h--cceEEEEECCEe----cCCCccCCCCCEEEEEec
Q 006686 575 KNLP---KGATVVDYAYMIHTEI-----------G--NKMVAAKVNGNL----VSPTHVLANAEVVEIITY 625 (635)
Q Consensus 575 ~~lp---~GaT~lD~A~~Ih~~l-----------g--~~~v~AkVNG~~----vdL~~~L~~gd~VEIiT~ 625 (635)
+++| .++|+.|+...+.... | +.-+-..|||+- -.++++|++||.|.|+.+
T Consensus 34 vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gldt~L~dGDeV~iip~ 104 (114)
T 1wgk_A 34 VALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFIST 104 (114)
T ss_dssp EEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEEEC
T ss_pred EEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccCCcCcCCCCCCEEEEeCC
Confidence 5666 3479999888775432 2 224678999985 468999999999999874
No 41
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=67.38 E-value=7.8 Score=38.17 Aligned_cols=54 Identities=15% Similarity=0.070 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhhcCCccccCCccchhHHHHHHHHHh----cCCCHHH-HHHHhhccccc
Q 006686 146 LELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGE----LELDWES-IAAGLLHDTVE 202 (635)
Q Consensus 146 ~~~v~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa~----l~~D~~t-I~AALLHDvvE 202 (635)
.+++.++.+|+.+.+.+.. +.-=+.|..+|+.+... .+.|.+. .+||||||+..
T Consensus 4 ~~~i~~~~~~v~~~l~~~~---~~H~~~H~~rV~~~a~~ia~~~~~d~~~l~~AAlLHDig~ 62 (223)
T 3djb_A 4 QEKIEKTITFVKHILEKDA---SGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVAD 62 (223)
T ss_dssp HHHHHHHHHHHHHHTTSSS---CTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHHHHHHHhhcCC---CcCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhccc
Confidence 3568889999988876542 22336899999876643 3567664 78999999984
No 42
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=64.66 E-value=8.2 Score=34.04 Aligned_cols=46 Identities=20% Similarity=0.230 Sum_probs=34.1
Q ss_pred CCcHHHHHHHhchhh-----------h----cceEEEEECCEec----CCCccCCCCCEEEEEec
Q 006686 580 GATVVDYAYMIHTEI-----------G----NKMVAAKVNGNLV----SPTHVLANAEVVEIITY 625 (635)
Q Consensus 580 GaT~lD~A~~Ih~~l-----------g----~~~v~AkVNG~~v----dL~~~L~~gd~VEIiT~ 625 (635)
++|+.|+...+...+ | +.-+-.-|||+-+ .++++|++||.|.|+.+
T Consensus 34 ~~TV~dLl~~L~~~~~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~gldt~L~dgD~V~fist 98 (110)
T 2k9x_A 34 GTNLNGLVQLLKTNYVKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFIST 98 (110)
T ss_dssp GCCHHHHHHHHTTTTCCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEEEEC
T ss_pred CccHHHHHHHHHHHccccchhhEecCCCcccCCCeEEEECCeeeeccCCcccCCCCcCEEEEeCC
Confidence 469999877775542 1 1125588999877 68999999999999864
No 43
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=63.68 E-value=8.7 Score=37.15 Aligned_cols=50 Identities=26% Similarity=0.193 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhcCCccccCCccchhHHHHHHHHHh----cCCCHH-HHHHHhhccc
Q 006686 148 LVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGE----LELDWE-SIAAGLLHDT 200 (635)
Q Consensus 148 ~v~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa~----l~~D~~-tI~AALLHDv 200 (635)
++.++.++......+. .....+.|.+.|+.+... ++.|.+ ..+||||||+
T Consensus 14 l~~~~~~~v~~~~~~~---~~~h~~~H~~rV~~~a~~la~~~~~d~~~l~~AaLLHDI 68 (220)
T 2pq7_A 14 LREILNIVREAFKDYD---DPAHDISHTFRVMENASEIASREKCDLQKAIIAALLHDI 68 (220)
T ss_dssp HHHHHHHHHHHHTTCC---CTTTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcC---CCchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcC
Confidence 3556777777765432 223346899999877633 466765 4789999999
No 44
>2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4
Probab=63.51 E-value=6.4 Score=39.52 Aligned_cols=52 Identities=25% Similarity=0.181 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhhcCCccccCCccchhHHHHHHHHHhcCCCHH-HHHHHhhccc
Q 006686 149 VRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWE-SIAAGLLHDT 200 (635)
Q Consensus 149 v~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa~l~~D~~-tI~AALLHDv 200 (635)
|.+|+++-....+..-...-.|=+.|.+..|....+-|.|.+ .++||||||+
T Consensus 38 i~ea~~~Ln~lvDeSDPD~~v~ql~HaLQTAe~ar~dg~d~dw~~laaLlHDL 90 (250)
T 2ibn_A 38 VMEAVDLLDGLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDL 90 (250)
T ss_dssp HHHHHHHGGGCCCTTC---CCCHHHHHHHHHHHHHHHSTTCHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCcCCCCcccHHHHHHHHHHHHHHhCcChhHHHHHHHHhcc
Confidence 566766665555544333445668999999999887788844 4599999997
No 45
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=62.99 E-value=7.7 Score=38.14 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhhcCCccccCCccchhHHHHHHHHHh----cCCCHHH-HHHHhhccccc
Q 006686 147 ELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGE----LELDWES-IAAGLLHDTVE 202 (635)
Q Consensus 147 ~~v~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa~----l~~D~~t-I~AALLHDvvE 202 (635)
.++.++.++......++. ..--+.|...|+..... .+.|.+. .+||||||+..
T Consensus 10 ~~i~~~~~~v~~~~~~~~---~~H~~~H~~rV~~~a~~ia~~~~~d~~ll~lAAlLHDigk 67 (231)
T 2pjq_A 10 TQLTAIQTYALQKLAHDH---SGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVID 67 (231)
T ss_dssp HHHHHHHHHHHTSSTTCC---SSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccC---CCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc
Confidence 457777777777655321 11226899999877643 3678765 69999999974
No 46
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1
Probab=58.82 E-value=10 Score=37.03 Aligned_cols=54 Identities=22% Similarity=0.097 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhhcCCccccCCccchhHHHHHHHH----Hh-cCCCHH-HHHHHhhcccccc
Q 006686 147 ELVRRALMLAFEAHDGQKRRSGEPFIIHPVEVARIL----GE-LELDWE-SIAAGLLHDTVED 203 (635)
Q Consensus 147 ~~v~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iL----a~-l~~D~~-tI~AALLHDvvED 203 (635)
.++.++.++......++. ..--+.|.+.|+... +. .+.|.+ ..+||||||+...
T Consensus 5 ~li~~~~~~v~~~~~~~~---~~H~~~H~~rV~~~a~~i~a~~~~~d~~~l~lAAlLHDigk~ 64 (225)
T 2qgs_A 5 MKIKKAYEYMKSFHQHDT---TGHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDS 64 (225)
T ss_dssp HHHHHHHHHHHHHTTTCS---SCHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHhcCC---CccCHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHcCCCC
Confidence 457777778777665321 112368999998774 32 356665 4799999999863
No 47
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=58.80 E-value=5.8 Score=37.55 Aligned_cols=32 Identities=19% Similarity=0.141 Sum_probs=24.1
Q ss_pred cchhHHHHHHHHH----hcCCCHH-HHHHHhhccccc
Q 006686 171 FIIHPVEVARILG----ELELDWE-SIAAGLLHDTVE 202 (635)
Q Consensus 171 Yi~Hpl~VA~iLa----~l~~D~~-tI~AALLHDvvE 202 (635)
.+.|.+.||.+.. .+|+|.+ ..+||||||+=.
T Consensus 19 ~~~Hs~~Va~~A~~lA~~~g~~~~~~~~agLLHDIGk 55 (188)
T 2o08_A 19 RYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAK 55 (188)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 4589999987653 4678765 478999999853
No 48
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=56.71 E-value=6.6 Score=37.23 Aligned_cols=32 Identities=28% Similarity=0.242 Sum_probs=24.0
Q ss_pred cchhHHHHHHHHH----hcCCCHH-HHHHHhhccccc
Q 006686 171 FIIHPVEVARILG----ELELDWE-SIAAGLLHDTVE 202 (635)
Q Consensus 171 Yi~Hpl~VA~iLa----~l~~D~~-tI~AALLHDvvE 202 (635)
.+.|.+.||.+.. .+|+|.+ ..+||||||+=.
T Consensus 20 ~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDiGk 56 (190)
T 3ccg_A 20 RYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAK 56 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC
Confidence 3589999987653 4678765 478999999853
No 49
>2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=53.60 E-value=7.9 Score=36.95 Aligned_cols=32 Identities=31% Similarity=0.237 Sum_probs=24.1
Q ss_pred cchhHHHHHHHHH----hcCCCHH-HHHHHhhccccc
Q 006686 171 FIIHPVEVARILG----ELELDWE-SIAAGLLHDTVE 202 (635)
Q Consensus 171 Yi~Hpl~VA~iLa----~l~~D~~-tI~AALLHDvvE 202 (635)
.+.|.+.||.+.. .+|+|.+ ..+||||||+=.
T Consensus 27 ~~~Hs~~Va~~A~~lA~~~g~d~~~~~~AgLLHDIGK 63 (196)
T 2ogi_A 27 RFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAK 63 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHcCC
Confidence 4589999987653 4688765 478999999843
No 50
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=49.65 E-value=57 Score=25.07 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=43.1
Q ss_pred CceeeCCCCc--eeecCCCCcHHHHHHHhchhhhcc--eEEEEECCEecCCCc-----cCCCCCEEEEEe
Q 006686 564 RVFVFTPRGE--IKNLPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTH-----VLANAEVVEIIT 624 (635)
Q Consensus 564 ~v~V~tPdG~--~~~lp~GaT~lD~A~~Ih~~lg~~--~v~AkVNG~~vdL~~-----~L~~gd~VEIiT 624 (635)
.|+|.+++|+ .++++...|+.|+-..|....|-. -.--..+|+..+-+. .+++|++|.++.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 3678888887 467788899999999987665532 234456787765443 456899988764
No 51
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus}
Probab=47.51 E-value=11 Score=40.06 Aligned_cols=57 Identities=21% Similarity=0.195 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHhhcCCccc--cCC---ccchhHHHHHHHH----HhcCCCHHH-HHHHhhcccc
Q 006686 145 ELELVRRALMLAFEAHDGQKRR--SGE---PFIIHPVEVARIL----GELELDWES-IAAGLLHDTV 201 (635)
Q Consensus 145 ~~~~v~~A~~~A~~aH~gQ~Rk--sGe---PYi~Hpl~VA~iL----a~l~~D~~t-I~AALLHDvv 201 (635)
|.+.|-..-.|=.-.+..|.-- .|. --++|.++||.+. ..+|++++. -+||||||+=
T Consensus 45 D~~rII~S~~FrRL~~ktQv~~~~~~d~~~tRl~HSl~Va~iar~ia~~l~l~~~l~~~a~LlHDiG 111 (376)
T 2dqb_A 45 DRDRILHTTAFRRLEYKTQVLPGWAGDYYRTRLTHTLEVAQVSRSIARALGLNEDLTEAIALSHDLG 111 (376)
T ss_dssp HHHHHHHSHHHHHGGGSCSSSCSCC--CCCCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTTT
T ss_pred HHHHHHCCHHHHHHcCCCccccCCCCcccccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5555655556655566667521 222 2258999999875 357888764 6899999985
No 52
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=46.75 E-value=13 Score=34.99 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=25.8
Q ss_pred CccchhHHHHHHHH---Hh------cCCCHH-HHHHHhhcccccc
Q 006686 169 EPFIIHPVEVARIL---GE------LELDWE-SIAAGLLHDTVED 203 (635)
Q Consensus 169 ePYi~Hpl~VA~iL---a~------l~~D~~-tI~AALLHDvvED 203 (635)
+.-..|-..||.+. +. -+.|.+ .+.+|||||+.|.
T Consensus 31 esvaeHs~rVa~~A~~la~~~~~~~~~~d~~~v~~~aLlHD~~E~ 75 (177)
T 2cqz_A 31 ESIADHSFGVAFITLVLADVLEKRGKRIDVEKALKMAIVHDLAEA 75 (177)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHH
Confidence 44568999988765 43 467876 5889999999863
No 53
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=42.70 E-value=79 Score=24.22 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=42.7
Q ss_pred CceeeCCCCce--eecCCCCcHHHHHHHhchhhhc--ceEEEEECCEecCCCc-----cCCCCCEEEEEe
Q 006686 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGN--KMVAAKVNGNLVSPTH-----VLANAEVVEIIT 624 (635)
Q Consensus 564 ~v~V~tPdG~~--~~lp~GaT~lD~A~~Ih~~lg~--~~v~AkVNG~~vdL~~-----~L~~gd~VEIiT 624 (635)
.|+|.+++|+. ++++...|+.|+-..|....|- .-.--..+|+..+-+. -+++|++|.++.
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVL 71 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 36778888874 6678889999999998766553 2334456787654343 357899988865
No 54
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=40.49 E-value=17 Score=30.17 Aligned_cols=24 Identities=8% Similarity=0.213 Sum_probs=21.2
Q ss_pred EEECCEecCCCccCCCCCEEEEEe
Q 006686 601 AKVNGNLVSPTHVLANAEVVEIIT 624 (635)
Q Consensus 601 AkVNG~~vdL~~~L~~gd~VEIiT 624 (635)
.+|||+.+..++.|+.||.|+|.-
T Consensus 28 V~VNg~~~~~~~~v~~gd~I~v~~ 51 (92)
T 2k6p_A 28 VWLNGSCAKASKEVKAGDTISLHY 51 (92)
T ss_dssp CEETTEECCTTCBCCTTCEEEECC
T ss_pred EEECCEEcCCCCCcCCCCEEEEEe
Confidence 679999998999999999998843
No 55
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=40.15 E-value=89 Score=25.23 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=43.1
Q ss_pred CceeeCCCCc-e--eecCCCCcHHHHHHHhchhh--hcceEEEEECCEecCCCc-----cCCCCCEEEEEe
Q 006686 564 RVFVFTPRGE-I--KNLPKGATVVDYAYMIHTEI--GNKMVAAKVNGNLVSPTH-----VLANAEVVEIIT 624 (635)
Q Consensus 564 ~v~V~tPdG~-~--~~lp~GaT~lD~A~~Ih~~l--g~~~v~AkVNG~~vdL~~-----~L~~gd~VEIiT 624 (635)
.|+|.+++|+ . +.+....++..+-.++.... ....+.-..+|+.+..+. -+++||+|++.+
T Consensus 9 ~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 79 (79)
T 3a4r_A 9 RLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVWG 79 (79)
T ss_dssp EEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEEC
T ss_pred EEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEeC
Confidence 4678889995 4 45566777777755554443 345677888999888765 378999999864
No 56
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=37.33 E-value=17 Score=38.56 Aligned_cols=33 Identities=30% Similarity=0.265 Sum_probs=25.2
Q ss_pred ccchhHHHHHHHHH----hcCCCH--HHHHHHhhccccc
Q 006686 170 PFIIHPVEVARILG----ELELDW--ESIAAGLLHDTVE 202 (635)
Q Consensus 170 PYi~Hpl~VA~iLa----~l~~D~--~tI~AALLHDvvE 202 (635)
-.+.|.+.||.+.. .+++|. ...+||||||+-.
T Consensus 50 ~r~~Hsl~V~~~a~~ia~~~~~~~~~~~~~AaLLHDiG~ 88 (371)
T 2hek_A 50 TRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGH 88 (371)
T ss_dssp BHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTC
T ss_pred ChhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc
Confidence 35799999987653 467775 4689999999864
No 57
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative; 1.50A {Agrobacterium tumefaciens} SCOP: a.211.1.1
Probab=35.82 E-value=24 Score=34.53 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=26.8
Q ss_pred CccchhHHHHHHHHHhc--CCCHHHHHHHhhcccccc
Q 006686 169 EPFIIHPVEVARILGEL--ELDWESIAAGLLHDTVED 203 (635)
Q Consensus 169 ePYi~Hpl~VA~iLa~l--~~D~~tI~AALLHDvvED 203 (635)
+.--.|.+.||.+...+ +.|...+.+||+||..|=
T Consensus 54 eSVAeHS~~va~ia~~l~~~~~~r~~~~aL~HD~~E~ 90 (207)
T 2gz4_A 54 FTVAQHCLIVETIFCRMCPGATPDEMQMALLHDAPEY 90 (207)
T ss_dssp CBHHHHHHHHHHHHHHHCTTCCHHHHHHHHTTTTTHH
T ss_pred ccHHHHHHHHHHHHHHHCCCCCHHHHHHHHhcCchHh
Confidence 44458999999876432 467788999999999873
No 58
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=35.41 E-value=28 Score=33.59 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=25.7
Q ss_pred CCccchhHHHHHHHH---H-----hc--CCCHH-HHHHHhhccccc
Q 006686 168 GEPFIIHPVEVARIL---G-----EL--ELDWE-SIAAGLLHDTVE 202 (635)
Q Consensus 168 GePYi~Hpl~VA~iL---a-----~l--~~D~~-tI~AALLHDvvE 202 (635)
++.-..|-+.||.+. + .+ ++|.+ .+.+|||||+.|
T Consensus 29 ~EnVaeHS~~VA~lA~~la~~~~~~~~~~vD~~~~~~~aLlHDi~E 74 (201)
T 2paq_A 29 TENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDASE 74 (201)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTTH
T ss_pred CccHHHHHHHHHHHHHHHHhhhHHhcCcccCHHHHHHHHHhccccc
Confidence 466678999998664 3 22 46765 588899999977
No 59
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=35.20 E-value=1.2e+02 Score=25.84 Aligned_cols=63 Identities=13% Similarity=0.176 Sum_probs=47.1
Q ss_pred CceeeCCCCc--eeecCCCCcHHHHHHHhchh--hhcceEEEEECCEecCCCcc-----CCCCCEEEEEecC
Q 006686 564 RVFVFTPRGE--IKNLPKGATVVDYAYMIHTE--IGNKMVAAKVNGNLVSPTHV-----LANAEVVEIITYN 626 (635)
Q Consensus 564 ~v~V~tPdG~--~~~lp~GaT~lD~A~~Ih~~--lg~~~v~AkVNG~~vdL~~~-----L~~gd~VEIiT~~ 626 (635)
.|.|..|+|+ .+.+..|.|+.|+...-=.. +...-..-+-|++.+||+-+ |.+|..+|++...
T Consensus 11 ~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 11 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred EEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence 5778899995 45557799999986654222 22334577889999999986 5899999998754
No 60
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=33.45 E-value=91 Score=26.12 Aligned_cols=63 Identities=8% Similarity=0.225 Sum_probs=43.9
Q ss_pred CceeeCCCCceeec--CCCCcHHHHHHHhchhhh--cceEEEEECCEecCCCc-----cCCCCCEEEEEecC
Q 006686 564 RVFVFTPRGEIKNL--PKGATVVDYAYMIHTEIG--NKMVAAKVNGNLVSPTH-----VLANAEVVEIITYN 626 (635)
Q Consensus 564 ~v~V~tPdG~~~~l--p~GaT~lD~A~~Ih~~lg--~~~v~AkVNG~~vdL~~-----~L~~gd~VEIiT~~ 626 (635)
.|+|.+++|+.+.| ....++..+-.++....| ...+.-..+|+.+..+. -+++||+|+++...
T Consensus 7 ~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q 78 (91)
T 2io0_B 7 NLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQ 78 (91)
T ss_dssp EEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEec
Confidence 46788889986666 456666666555544433 45677788998887764 46899999998753
No 61
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=31.99 E-value=1.5e+02 Score=24.37 Aligned_cols=63 Identities=13% Similarity=0.072 Sum_probs=43.6
Q ss_pred ceeeCCCCce--eecCCCCcHHHHHHHhchhh-----hcceEEEEECCEecCCCc-----cCCCCCEEEEEecCC
Q 006686 565 VFVFTPRGEI--KNLPKGATVVDYAYMIHTEI-----GNKMVAAKVNGNLVSPTH-----VLANAEVVEIITYNV 627 (635)
Q Consensus 565 v~V~tPdG~~--~~lp~GaT~lD~A~~Ih~~l-----g~~~v~AkVNG~~vdL~~-----~L~~gd~VEIiT~~d 627 (635)
|+|.+++|+. ++++...|+.|+-..|.... .-.-.--..+|+..+-+. .+++|++|.++-...
T Consensus 3 I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp EEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred EEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 6677777864 56678899999999998763 233344556887664333 457899998876543
No 62
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=31.75 E-value=1.2e+02 Score=25.01 Aligned_cols=62 Identities=13% Similarity=0.177 Sum_probs=43.6
Q ss_pred CceeeCCCCce--eecCCCCcHHHHHHHhchhhhcc--eEEEEECCEecCCCc-----cCCCCCEEEEEec
Q 006686 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTH-----VLANAEVVEIITY 625 (635)
Q Consensus 564 ~v~V~tPdG~~--~~lp~GaT~lD~A~~Ih~~lg~~--~v~AkVNG~~vdL~~-----~L~~gd~VEIiT~ 625 (635)
.|+|.+++|+. ++++...|+.|+-..|....|-. ..--..+|+..+-+. .+++|++|.++..
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~ 72 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEe
Confidence 36788888874 66788899999999987665532 334456887664443 3579999988754
No 63
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=31.43 E-value=34 Score=30.86 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=22.0
Q ss_pred EEECCEecCCCccCCCCCEEEEEec
Q 006686 601 AKVNGNLVSPTHVLANAEVVEIITY 625 (635)
Q Consensus 601 AkVNG~~vdL~~~L~~gd~VEIiT~ 625 (635)
++|||+.+..++.|+.||+|+|.-.
T Consensus 36 V~VNG~~vk~s~~V~~GD~I~I~~~ 60 (133)
T 1dm9_A 36 VHYNGQRSKPSKIVELNATLTLRQG 60 (133)
T ss_dssp EEETTEECCTTCBCCTTCEEEEEET
T ss_pred EEECCEEcCCCCEeCCCCEEEEEeC
Confidence 6799999999999999999998653
No 64
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=31.09 E-value=23 Score=35.16 Aligned_cols=32 Identities=25% Similarity=0.244 Sum_probs=23.6
Q ss_pred chhHHHHHHHHHhc----CCCHH-HHHHHhhcccccc
Q 006686 172 IIHPVEVARILGEL----ELDWE-SIAAGLLHDTVED 203 (635)
Q Consensus 172 i~Hpl~VA~iLa~l----~~D~~-tI~AALLHDvvED 203 (635)
+.|.++|+.....+ +.|.+ ..+||||||+.-.
T Consensus 27 ~~H~~rV~~~a~~ia~~~~~d~~~~~~AalLHDig~~ 63 (239)
T 3gw7_A 27 VCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSL 63 (239)
T ss_dssp CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccc
Confidence 58999998876543 45654 5889999999753
No 65
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=30.57 E-value=1.5e+02 Score=23.00 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=42.0
Q ss_pred CceeeCCCCce---ee-cCCCCcHHHHHHHhchhhhcc--eEEEEECCEecCCCc-----cCCCCCEEEEEe
Q 006686 564 RVFVFTPRGEI---KN-LPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTH-----VLANAEVVEIIT 624 (635)
Q Consensus 564 ~v~V~tPdG~~---~~-lp~GaT~lD~A~~Ih~~lg~~--~v~AkVNG~~vdL~~-----~L~~gd~VEIiT 624 (635)
.|+|.+++|+. ++ ++...|+.|+-..|....|-. -.--..+|+..+-+. -+++|++|.++-
T Consensus 4 ~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 75 (78)
T 2faz_A 4 WIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLV 75 (78)
T ss_dssp EEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEE
T ss_pred EEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 36778888864 56 888999999999987765522 233445787654333 456888888764
No 66
>3tm8_A BD1817, uncharacterized protein; HD-GYP, phosphodiesterase, unknown function, hydrolase,signa protein; 1.28A {Bdellovibrio bacteriovorus} PDB: 3tmb_A 3tmc_A 3tmd_A
Probab=30.44 E-value=29 Score=35.76 Aligned_cols=35 Identities=26% Similarity=0.210 Sum_probs=24.8
Q ss_pred cCCccc-hhHHHHHHHHH----hcCCCHH-----HHHHHhhcccc
Q 006686 167 SGEPFI-IHPVEVARILG----ELELDWE-----SIAAGLLHDTV 201 (635)
Q Consensus 167 sGePYi-~Hpl~VA~iLa----~l~~D~~-----tI~AALLHDvv 201 (635)
...||. .|.+.||.+.. .+|++.+ ..+||||||+=
T Consensus 162 ~~~~~~~~Hs~~Va~la~~la~~lgl~~~~~~~~l~~aaLLHDIG 206 (328)
T 3tm8_A 162 NTDKTISHHGVTVSTLSIALAQKLGITDPKKTQLLTLGALLHDYG 206 (328)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTGG
T ss_pred hcCchHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHhcCC
Confidence 455665 79999987653 4677643 44699999983
No 67
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=29.77 E-value=1.2e+02 Score=25.39 Aligned_cols=62 Identities=8% Similarity=0.225 Sum_probs=43.9
Q ss_pred CceeeCCCCceeec--CCCCcHHHHHHHhchhhh--cceEEEEECCEecCCCc-----cCCCCCEEEEEec
Q 006686 564 RVFVFTPRGEIKNL--PKGATVVDYAYMIHTEIG--NKMVAAKVNGNLVSPTH-----VLANAEVVEIITY 625 (635)
Q Consensus 564 ~v~V~tPdG~~~~l--p~GaT~lD~A~~Ih~~lg--~~~v~AkVNG~~vdL~~-----~L~~gd~VEIiT~ 625 (635)
.|+|.+++|+.+.| ....++..+-.++....| ...+.-..+|+.+..+. -+++||+|+++..
T Consensus 9 ~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~ 79 (94)
T 2io1_B 9 NLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 79 (94)
T ss_dssp EEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred EEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 46788888976655 566777777665544444 45677778998887764 4689999999764
No 68
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=28.61 E-value=1.1e+02 Score=26.28 Aligned_cols=61 Identities=10% Similarity=0.197 Sum_probs=41.1
Q ss_pred CceeeCCCCc-e--eecCCCCcHHHHH--HHhchhhhcceEEEEECCEecCCCcc-----CCCCCEEEEEe
Q 006686 564 RVFVFTPRGE-I--KNLPKGATVVDYA--YMIHTEIGNKMVAAKVNGNLVSPTHV-----LANAEVVEIIT 624 (635)
Q Consensus 564 ~v~V~tPdG~-~--~~lp~GaT~lD~A--~~Ih~~lg~~~v~AkVNG~~vdL~~~-----L~~gd~VEIiT 624 (635)
.|+|..++|. . +.+...++..-+. |.-..++....+...+||+.+..+.. +++||+|++.+
T Consensus 27 ~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~~ 97 (97)
T 2jxx_A 27 QLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVWG 97 (97)
T ss_dssp EEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEEC
T ss_pred EEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEeC
Confidence 4567778884 4 4445566655553 33334444567888999999988653 79999999864
No 69
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, STRU genomics, joint center for structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=28.24 E-value=40 Score=34.10 Aligned_cols=32 Identities=34% Similarity=0.421 Sum_probs=23.5
Q ss_pred ccchhHHHHHHHHH----hcCC-CH-HHHHHHhhcccc
Q 006686 170 PFIIHPVEVARILG----ELEL-DW-ESIAAGLLHDTV 201 (635)
Q Consensus 170 PYi~Hpl~VA~iLa----~l~~-D~-~tI~AALLHDvv 201 (635)
.++.|.+.||.+.. .++. +. ....||||||+=
T Consensus 118 ~~~~hs~~va~~a~~la~~~~~~~~~~~~~agllHDIG 155 (305)
T 3hc1_A 118 TLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLLHDVG 155 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 46799999987763 3465 44 468899999974
No 70
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=28.10 E-value=27 Score=28.96 Aligned_cols=31 Identities=26% Similarity=0.387 Sum_probs=24.2
Q ss_pred ceeeCCCC-ceeecCCCCcHHHHHHHhchhhh
Q 006686 565 VFVFTPRG-EIKNLPKGATVVDYAYMIHTEIG 595 (635)
Q Consensus 565 v~V~tPdG-~~~~lp~GaT~lD~A~~Ih~~lg 595 (635)
|.+..|+| ..++++.|.|++|+|..-+-.+.
T Consensus 4 v~~~~~~g~~~~~~~~g~tlL~a~~~~gi~i~ 35 (95)
T 1frr_A 4 TVLKTPSGEFTLDVPEGTTILDAAEEAGYDLP 35 (95)
T ss_dssp EEEEETTEEEEEEECTTCCHHHHHHHTTCCCC
T ss_pred EEEEeCCCcEEEEeCCCCcHHHHHHHcCCCCC
Confidence 45556898 88999999999999988654443
No 71
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=28.07 E-value=29 Score=31.00 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=20.9
Q ss_pred EEEECCEecCCCccCCCCCEEEE
Q 006686 600 AAKVNGNLVSPTHVLANAEVVEI 622 (635)
Q Consensus 600 ~AkVNG~~vdL~~~L~~gd~VEI 622 (635)
+..|||+.+.-.++|++||.|.|
T Consensus 91 gt~VNG~~V~~~~~L~~GD~I~l 113 (124)
T 3fm8_A 91 RTFVNGSSVSSPIQLHHGDRILW 113 (124)
T ss_dssp CEEETTEECCSCEEECTTCEEEE
T ss_pred CEEECCEEcCCcEECCCCCEEEE
Confidence 68999999987789999999987
No 72
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=27.40 E-value=1.2e+02 Score=23.74 Aligned_cols=60 Identities=7% Similarity=0.233 Sum_probs=40.4
Q ss_pred CceeeCCCCceeec--CCCCcHHHHHHHhchh--hhcceEEEEECCEecCCCc-----cCCCCCEEEEE
Q 006686 564 RVFVFTPRGEIKNL--PKGATVVDYAYMIHTE--IGNKMVAAKVNGNLVSPTH-----VLANAEVVEII 623 (635)
Q Consensus 564 ~v~V~tPdG~~~~l--p~GaT~lD~A~~Ih~~--lg~~~v~AkVNG~~vdL~~-----~L~~gd~VEIi 623 (635)
.|+|.+++|+.+.+ ....++..+-.++... +....+.-..+|+.+..+. -+++||+|++.
T Consensus 3 ~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 36788889986665 4566666665554433 3345567778998887764 36789999875
No 73
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=27.17 E-value=1.8e+02 Score=22.89 Aligned_cols=63 Identities=13% Similarity=0.053 Sum_probs=42.3
Q ss_pred CceeeCCCCce--eecCCCCcHHHHHHHhchhh-----hcceEEEEECCEecCCCc-----cCCCCCEEEEEecC
Q 006686 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEI-----GNKMVAAKVNGNLVSPTH-----VLANAEVVEIITYN 626 (635)
Q Consensus 564 ~v~V~tPdG~~--~~lp~GaT~lD~A~~Ih~~l-----g~~~v~AkVNG~~vdL~~-----~L~~gd~VEIiT~~ 626 (635)
.|+|.+.+|+. ++++...|+.|+-..|.... .-.-.--..+|+..+-+. .+++|++|.++...
T Consensus 7 ~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 7 TITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp EEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred EEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 35677777864 56788899999999988752 223344456787664333 45689999887644
No 74
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=26.79 E-value=1.5e+02 Score=23.23 Aligned_cols=61 Identities=15% Similarity=0.148 Sum_probs=41.7
Q ss_pred CceeeCCCCce--eecCCCCcHHHHHHHhchhhhcc--eEEEEECCEecCCCc-----cCCCCCEEEEEe
Q 006686 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTH-----VLANAEVVEIIT 624 (635)
Q Consensus 564 ~v~V~tPdG~~--~~lp~GaT~lD~A~~Ih~~lg~~--~v~AkVNG~~vdL~~-----~L~~gd~VEIiT 624 (635)
.|+|.+++|+. ++++...|+.|+-..|....+-. -.--..+|+...-+. -+++|++|.++-
T Consensus 5 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 74 (85)
T 3n3k_B 5 RIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLL 74 (85)
T ss_dssp EEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEE
Confidence 46777788864 46678899999988887665422 234445776654443 467899998875
No 75
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=26.37 E-value=35 Score=31.43 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.6
Q ss_pred EEEECCEecCCCccCCCCCEEEE
Q 006686 600 AAKVNGNLVSPTHVLANAEVVEI 622 (635)
Q Consensus 600 ~AkVNG~~vdL~~~L~~gd~VEI 622 (635)
|..|||+.+.-.+.|++||.|.|
T Consensus 111 gt~VNG~~i~~~~~L~~GD~I~~ 133 (154)
T 4ejq_A 111 DTYVNGKKVTEPSILRSGNRIIM 133 (154)
T ss_dssp CEEETTEECCSCEECCTTCEEEE
T ss_pred ceEECCEEcCCceECCCCCEEEE
Confidence 68899999977779999999987
No 76
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1
Probab=26.36 E-value=44 Score=31.84 Aligned_cols=35 Identities=37% Similarity=0.496 Sum_probs=25.9
Q ss_pred CccchhHHHHHHH---HHh------cCCCHH-HHHHHhhcccccc
Q 006686 169 EPFIIHPVEVARI---LGE------LELDWE-SIAAGLLHDTVED 203 (635)
Q Consensus 169 ePYi~Hpl~VA~i---La~------l~~D~~-tI~AALLHDvvED 203 (635)
+.-..|-+.||.+ |+. -++|.+ .+..||+||+.|=
T Consensus 36 EsvAeHS~~vA~ia~~la~~~~~~~~~~d~~r~~~~aL~HDl~E~ 80 (184)
T 1xx7_A 36 ESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLGEA 80 (184)
T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTTHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHcCcHHh
Confidence 4456899988874 454 467886 6889999999873
No 77
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=25.34 E-value=1.9e+02 Score=22.53 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=42.1
Q ss_pred CceeeCCCCce--eecCCCCcHHHHHHHhchhhhcc--eEEEEECCEecCCCc-----cCCCCCEEEEEe
Q 006686 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTH-----VLANAEVVEIIT 624 (635)
Q Consensus 564 ~v~V~tPdG~~--~~lp~GaT~lD~A~~Ih~~lg~~--~v~AkVNG~~vdL~~-----~L~~gd~VEIiT 624 (635)
.|+|.+++|+. ++++...|+.|+-..|....+-. -.--..+|+..+-+. -+++|++|.++-
T Consensus 5 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~ 74 (85)
T 3mtn_B 5 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLL 74 (85)
T ss_dssp EEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 46788888875 45678899999998887665422 233445887665443 357899988864
No 78
>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*
Probab=25.28 E-value=71 Score=32.61 Aligned_cols=52 Identities=21% Similarity=0.191 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhcCCccccCCccchhHHHHHHHHHhcCCCHH-HHHHHhhccc
Q 006686 149 VRRALMLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWE-SIAAGLLHDT 200 (635)
Q Consensus 149 v~~A~~~A~~aH~gQ~RksGePYi~Hpl~VA~iLa~l~~D~~-tI~AALLHDv 200 (635)
|.+|+++-....+..-.....|=|.|.+..|+...+-+-+.+ ...+||+||.
T Consensus 77 IweA~e~Ln~LvDeSDPD~dl~qi~H~lQTAEaiR~d~pp~dW~qLtGLiHDL 129 (289)
T 2huo_A 77 IMEAVGMLDDLVDESDPDVDFPNSFHAFQTAEGIRKAHPDKDWFHLVGLLHDL 129 (289)
T ss_dssp HHHHHHHGGGCCCSSCTTCCSCHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhcCCcCCccchhHHHHHHHHHHHHHHhCCCcchheeeeecccc
Confidence 667777766666655444567889999999999987666523 4567999997
No 79
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.76A {Archaeoglobus fulgidus} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=24.82 E-value=84 Score=29.72 Aligned_cols=34 Identities=29% Similarity=0.217 Sum_probs=25.5
Q ss_pred CccchhHHHHHHH---HHh-cCCCH---H-HHHHHhhccccc
Q 006686 169 EPFIIHPVEVARI---LGE-LELDW---E-SIAAGLLHDTVE 202 (635)
Q Consensus 169 ePYi~Hpl~VA~i---La~-l~~D~---~-tI~AALLHDvvE 202 (635)
|.--.|-..||.+ |+. .++|. + .+..||+||+.|
T Consensus 37 EsVAeHS~~vA~iA~~la~~~~vd~~~~~r~~~maL~HDl~E 78 (173)
T 1ynb_A 37 ESVAEHNFRAAIIAFILALKSGESVEKACKAATAALFHDLHE 78 (173)
T ss_dssp CBHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTH
T ss_pred CcHHHHHHHHHHHHHHHhhhcCCChhHHHHHHHHHHHcchHH
Confidence 4445899998877 665 46777 4 477899999987
No 80
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.35 E-value=99 Score=24.12 Aligned_cols=59 Identities=8% Similarity=0.165 Sum_probs=39.2
Q ss_pred ceeeCCCCce--eecCCCCcHHHHHHHhchhhhcc--eEEEEECCEecCCCcc-----CCCCCEEEEE
Q 006686 565 VFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTHV-----LANAEVVEII 623 (635)
Q Consensus 565 v~V~tPdG~~--~~lp~GaT~lD~A~~Ih~~lg~~--~v~AkVNG~~vdL~~~-----L~~gd~VEIi 623 (635)
|+|.+++|+. ++++...|+.|+-..|....|-. -.--..+|+..+-+.. +++|++|.++
T Consensus 10 i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~ 77 (81)
T 2dzi_A 10 LTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLV 77 (81)
T ss_dssp EEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEE
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEE
Confidence 5667778864 67788999999999987665422 2334457776543333 4577777665
No 81
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=24.18 E-value=1.1e+02 Score=24.00 Aligned_cols=61 Identities=10% Similarity=0.146 Sum_probs=43.9
Q ss_pred CceeeCCCCcee--ecCCCCcHHHHHHHhchhhhcc--eEEEEECCEecCCCcc-----CCCCCEEEEEe
Q 006686 564 RVFVFTPRGEIK--NLPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTHV-----LANAEVVEIIT 624 (635)
Q Consensus 564 ~v~V~tPdG~~~--~lp~GaT~lD~A~~Ih~~lg~~--~v~AkVNG~~vdL~~~-----L~~gd~VEIiT 624 (635)
.|+|.+.+|+.+ ++....|+.++-..|....|-. -..-..+|+...-+.. +++|++|.++.
T Consensus 5 ~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~ 74 (79)
T 2uyz_B 5 KLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 74 (79)
T ss_dssp EEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEE
Confidence 467888888754 5567889999988887665532 3455678987765544 56999998875
No 82
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=23.05 E-value=2.6e+02 Score=21.60 Aligned_cols=61 Identities=13% Similarity=0.081 Sum_probs=42.7
Q ss_pred CceeeCCCCce--eecCCCCcHHHHHHHhchhhhcc--eEEEEECCEecCCCc-----cCCCCCEEEEEe
Q 006686 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTH-----VLANAEVVEIIT 624 (635)
Q Consensus 564 ~v~V~tPdG~~--~~lp~GaT~lD~A~~Ih~~lg~~--~v~AkVNG~~vdL~~-----~L~~gd~VEIiT 624 (635)
.|+|.+++|+. ++++...|+.++-..|....|-. -.--..+|+..+-+. -+++|++|.++-
T Consensus 6 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~ 75 (79)
T 3phx_B 6 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNL 75 (79)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 46788899975 46678899999999987665532 234456787655443 457789888764
No 83
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=22.99 E-value=1.9e+02 Score=23.99 Aligned_cols=62 Identities=6% Similarity=0.192 Sum_probs=43.0
Q ss_pred CceeeCCCCceeec--CCCCcHHHHHHHhchhh--hcceEEEEECCEecCCCc-----cCCCCCEEEEEec
Q 006686 564 RVFVFTPRGEIKNL--PKGATVVDYAYMIHTEI--GNKMVAAKVNGNLVSPTH-----VLANAEVVEIITY 625 (635)
Q Consensus 564 ~v~V~tPdG~~~~l--p~GaT~lD~A~~Ih~~l--g~~~v~AkVNG~~vdL~~-----~L~~gd~VEIiT~ 625 (635)
.|+|.+++|+.+.| ....++..+-.++.... ....+.-..+|+.+..+. -+++||+|+++..
T Consensus 19 ~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~ 89 (93)
T 2d07_B 19 NLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 89 (93)
T ss_dssp EEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred EEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEee
Confidence 46778888976555 56667777655554443 344677888998887764 4689999998763
No 84
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=21.57 E-value=27 Score=37.59 Aligned_cols=31 Identities=29% Similarity=0.206 Sum_probs=21.8
Q ss_pred cchhHHHHHHHHHh----cC-----CC----HHHHHHHhhcccc
Q 006686 171 FIIHPVEVARILGE----LE-----LD----WESIAAGLLHDTV 201 (635)
Q Consensus 171 Yi~Hpl~VA~iLa~----l~-----~D----~~tI~AALLHDvv 201 (635)
-+.|.++|+.+... ++ ++ .-+.+||||||+=
T Consensus 56 Rf~HSLgV~~la~~l~~~l~~~~~~~~~~d~~~~~~AaLlHDiG 99 (410)
T 2q14_A 56 RFQHSLGAFYLMSEAITQLTSKGNFIFDSEAEAVQAAILLHDIG 99 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTTT
T ss_pred eeehHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccC
Confidence 46899999887643 23 23 2357899999983
No 85
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=21.50 E-value=51 Score=26.86 Aligned_cols=67 Identities=10% Similarity=0.036 Sum_probs=42.1
Q ss_pred CceeeCCCCc-eee-cCCCCcHHHHHHHhchhhhcc--eEEEEEC--CEecC-------C-CccCCCCCEEEEEecCCcc
Q 006686 564 RVFVFTPRGE-IKN-LPKGATVVDYAYMIHTEIGNK--MVAAKVN--GNLVS-------P-THVLANAEVVEIITYNVSF 629 (635)
Q Consensus 564 ~v~V~tPdG~-~~~-lp~GaT~lD~A~~Ih~~lg~~--~v~AkVN--G~~vd-------L-~~~L~~gd~VEIiT~~d~E 629 (635)
.|+|.+++|. .+. |+..+|+.|+...|....|-. ...-..+ ++..+ | ++.|.+|++|-+...+..+
T Consensus 2 ~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~~~~ 81 (86)
T 2kzr_A 2 RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQTRP 81 (86)
T ss_dssp CEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCSCSC
T ss_pred EEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCCCCc
Confidence 4678899996 566 889999999999997765521 1111122 23332 2 1247889988776655444
Q ss_pred c
Q 006686 630 S 630 (635)
Q Consensus 630 g 630 (635)
.
T Consensus 82 ~ 82 (86)
T 2kzr_A 82 K 82 (86)
T ss_dssp C
T ss_pred c
Confidence 3
No 86
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=20.99 E-value=45 Score=27.64 Aligned_cols=30 Identities=27% Similarity=0.348 Sum_probs=23.6
Q ss_pred ceeeCCCC-ceeecCCCCcHHHHHHHhchhh
Q 006686 565 VFVFTPRG-EIKNLPKGATVVDYAYMIHTEI 594 (635)
Q Consensus 565 v~V~tPdG-~~~~lp~GaT~lD~A~~Ih~~l 594 (635)
|.+..|+| ..++++.|.|++|+|..-+-.+
T Consensus 3 v~~~~~~g~~~~~~~~g~tlL~a~~~~gi~i 33 (94)
T 1awd_A 3 VTLKTPSGEETIECPEDTYILDAAEEAGLDL 33 (94)
T ss_dssp EEEEETTEEEEEECCTTSCHHHHHHHTTCCC
T ss_pred EEEEeCCCcEEEEECCCCcHHHHHHHcCCCC
Confidence 45556887 7889999999999998865443
No 87
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=20.69 E-value=3e+02 Score=22.20 Aligned_cols=61 Identities=13% Similarity=0.190 Sum_probs=43.0
Q ss_pred CceeeCCCCce--eecCCCCcHHHHHHHhchhhhcc--eEEEEECCEecCCCc-----cCCCCCEEEEEe
Q 006686 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGNK--MVAAKVNGNLVSPTH-----VLANAEVVEIIT 624 (635)
Q Consensus 564 ~v~V~tPdG~~--~~lp~GaT~lD~A~~Ih~~lg~~--~v~AkVNG~~vdL~~-----~L~~gd~VEIiT 624 (635)
.|+|.+.+|+. ++++...|+.|+-..|....|-. -.--..+|+..+-+. -+++|++|.++-
T Consensus 3 ~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~ 72 (96)
T 3k9o_B 3 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 72 (96)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 46788888875 45678889999999987765532 234445887665443 467899999875
No 88
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=20.62 E-value=1.5e+02 Score=24.62 Aligned_cols=61 Identities=10% Similarity=0.129 Sum_probs=44.3
Q ss_pred CceeeCCCCce--eecCCCCcHHHHHHHhchhhhc--ceEEEEECCEecCCCc-----cCCCCCEEEEEe
Q 006686 564 RVFVFTPRGEI--KNLPKGATVVDYAYMIHTEIGN--KMVAAKVNGNLVSPTH-----VLANAEVVEIIT 624 (635)
Q Consensus 564 ~v~V~tPdG~~--~~lp~GaT~lD~A~~Ih~~lg~--~~v~AkVNG~~vdL~~-----~L~~gd~VEIiT 624 (635)
.|+|.+.+|+. +++....|+.++-..|....|- ....-..+|+...-+. -+++|++|.++.
T Consensus 23 ~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~ 92 (97)
T 1wyw_B 23 KLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 92 (97)
T ss_dssp EEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEE
Confidence 46788888985 4556788999998888766553 3455667898776554 367999999875
No 89
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=20.62 E-value=67 Score=31.17 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=31.2
Q ss_pred HHHHHHHhcCC---CHHHHHHHhhccccccCCCCCHHHHHHHhChHHH
Q 006686 177 EVARILGELEL---DWESIAAGLLHDTVEDTNVVTFERIEEEFGATVR 221 (635)
Q Consensus 177 ~VA~iLa~l~~---D~~tI~AALLHDvvEDT~~~T~e~I~~~FG~~Va 221 (635)
.|+.+|+++|. |.|.++ |++++... ...++|.+.||+++.
T Consensus 24 tv~~~l~~~g~~vidaD~ia----~~l~~~~~-~~~~~i~~~fG~~~~ 66 (210)
T 4i1u_A 24 TVADLFAARGASLVDTDLIA----HRITAPAG-LAMPAIEQTFGPAFV 66 (210)
T ss_dssp HHHHHHHHTTCEEEEHHHHH----HHHTSTTC-TTHHHHHHHHCGGGB
T ss_pred HHHHHHHHCCCcEEECcHHH----HHHhcCCc-HHHHHHHHHhChhhc
Confidence 36888988885 777765 88887655 578999999999853
No 90
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=20.38 E-value=61 Score=28.96 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=20.0
Q ss_pred EEEECCEecCCCc--cCCCCCEEEE
Q 006686 600 AAKVNGNLVSPTH--VLANAEVVEI 622 (635)
Q Consensus 600 ~AkVNG~~vdL~~--~L~~gd~VEI 622 (635)
|..|||+.+.... +|++||+|.|
T Consensus 95 GT~vNg~ri~~~~~~~L~~GD~I~~ 119 (130)
T 4h87_A 95 GTFLNKTRIPPRTYCRVHVGHVVRF 119 (130)
T ss_dssp CEEETTEECCTTCCEECCTTCEEEE
T ss_pred ceEECCEECCCCceeECCCCCEEEE
Confidence 7889999998765 6999999987
No 91
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=20.25 E-value=41 Score=29.36 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.1
Q ss_pred EEEECCEecCCCccCCCCCEEEE
Q 006686 600 AAKVNGNLVSPTHVLANAEVVEI 622 (635)
Q Consensus 600 ~AkVNG~~vdL~~~L~~gd~VEI 622 (635)
+..|||+.+.-.++|++||.|.|
T Consensus 81 gt~vNg~~i~~~~~L~~GD~I~i 103 (120)
T 1wln_A 81 ETYVDGQRISETTMLQSGMRLQF 103 (120)
T ss_dssp CEEETSCBCSSCEEECTTCEEEE
T ss_pred CEEECCEEcCCCEECCCCCEEEE
Confidence 67899999986669999999987
Done!