BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006687
(635 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9WTK3|GPAA1_MOUSE Glycosylphosphatidylinositol anchor attachment 1 protein OS=Mus
musculus GN=Gpaa1 PE=1 SV=3
Length = 621
Score = 122 bits (306), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 125/473 (26%), Positives = 206/473 (43%), Gaps = 67/473 (14%)
Query: 82 GINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIW 141
G N GI+RAPR E++VL P + ++G+ ++ + + AKDII+
Sbjct: 126 GTNVYGILRAPRSASTESLVLTVPCGP---DATNSQAVGLLLALAAHFRGQIYWAKDIIF 182
Query: 142 LVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAA 201
LV D + AWL YH + + S + R+G + AA
Sbjct: 183 LVTDH---DLLGTEAWLEAYHDINVTGIQSSPLQG-----------------RAGAIQAA 222
Query: 202 LVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKW 261
+ L ++ ++ +L + E NGQ+PNLDL+N+ + GL ++
Sbjct: 223 VALELS--SDVVTSLDVTVEGLNGQLPNLDLLNLFQTFC-QKGGLLCTLQ---------- 269
Query: 262 VKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRDY 321
GK+ DW S ++G TL + QA G P GPHG F Y
Sbjct: 270 -----------GKLQPQ---DWT---SLEGPLQGLQTLLLMVLRQASGRPHGPHGLFLRY 312
Query: 322 QVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSK 381
V+A+TL + + L G+ +EG+ R +N+LLE+ HQSFF YLL + S+
Sbjct: 313 GVEALTLR-----GINSFRQYKYDLATVGKALEGMFRKLNHLLERLHQSFFFYLLPALSR 367
Query: 382 FVSVGVYMIAFALLVAPLPVVAASLYAKTLDLNPTSEKDKSATSNELGSVLQSWKWLNSV 441
FVS+G+YM A L+ L + A L+ + E+ A S + L S+
Sbjct: 368 FVSIGLYMPATGFLLLVLGLKALELWMQLHQAGVNPEEAGKAPSPGTPLLPTQGVGLASL 427
Query: 442 KTVFVVHFWGATVSLLPYFISQIPDSDPTTNFSV----WILLSILSLEILRWILVSPSSH 497
++ + L YF+ + T +F V ++L++L++ + L +
Sbjct: 428 TAPLLI---SQAMGLALYFLPVLGQHLATQHFPVAEAEAVVLTLLAIYVAGLALPHNTHR 484
Query: 498 IYG--LPQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHP 548
+ +P W LK + + LG ++++NF+ + A MVP A +A P
Sbjct: 485 VVNSQVPDRGWMALKLVALIYLALQLGCIALLNFSLGFLLAATMVPAAALAKP 537
>sp|O43292|GPAA1_HUMAN Glycosylphosphatidylinositol anchor attachment 1 protein OS=Homo
sapiens GN=GPAA1 PE=1 SV=3
Length = 621
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 122/471 (25%), Positives = 203/471 (43%), Gaps = 63/471 (13%)
Query: 82 GINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIW 141
G N GI+RAPR E++VL P + + ++G+ ++ + + AKDI++
Sbjct: 126 GTNVYGILRAPRAASTESLVLTVPCGSDS---TNSQAVGLLLALAAHFRGQIYWAKDIVF 182
Query: 142 LVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAA 201
LV + + AWL YH + + S + R+G + AA
Sbjct: 183 LVTEH---DLLGTEAWLEAYHDVNVTGMQSSPLQG-----------------RAGAIQAA 222
Query: 202 LVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKW 261
+ L ++ ++ +L + E NGQ+PNLDL+N+ + GL ++
Sbjct: 223 VALELS--SDVVTSLDVAVEGLNGQLPNLDLLNLFQTFC-QKGGLLCTLQ---------- 269
Query: 262 VKSLGEVFESLGKMVKTLNP-DWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRD 320
GK L P DW S ++G TL + QA G P G HG F
Sbjct: 270 -----------GK----LQPEDWT---SLDGPLQGLQTLLLMVLRQASGRPHGSHGLFLR 311
Query: 321 YQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPS 380
Y+V+A+TL + + L+ G+ +EG+ R +N+LLE+ HQSFFLYLL S
Sbjct: 312 YRVEALTLR-----GINSFRQYKYDLVAVGKALEGMFRKLNHLLERLHQSFFLYLLPGLS 366
Query: 381 KFVSVGVYMIAFALLVAPLPVVAASLYAKTLDLNPTSEKDKSATSNELGSVLQSWKWLNS 440
+FVS+G+YM A L+ L + A L+ + + E+ A + L S
Sbjct: 367 RFVSIGLYMPAVGFLLLVLGLKALELWMQLHEAGMGLEEPGGAPGPSVPLPPSQGVGLAS 426
Query: 441 -VKTVFVVHFWGATVSLLPYFISQIPDSDPTTNFSVWILLSILSLEILRWILVSPSSHIY 499
V + + G + +LP + + ++L++L++ L + +
Sbjct: 427 LVAPLLISQAMGLALYVLPVLGQHVATQHFPVAEAEAVVLTLLAIYAAGLALPHNTHRVV 486
Query: 500 GL--PQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHP 548
P W LK + + LG +++ NF+ + A MVP A +A P
Sbjct: 487 STQAPDRGWMALKLVALIYLALQLGCIALTNFSLGFLLATTMVPTAALAKP 537
>sp|Q9US48|GAA1_SCHPO GPI transamidase component gaa1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=gaa1 PE=3 SV=1
Length = 581
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 107/400 (26%), Positives = 165/400 (41%), Gaps = 72/400 (18%)
Query: 6 EVSEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFS 65
VSE+ L ++N N T S A S+L A V + + L Q F+
Sbjct: 47 HVSESALLPGQVNTYFENRYSKTVSSSLTAANTWSHLDASVGTNTMYDDLEQI-----FT 101
Query: 66 GPDSGVMQENST-----RSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLG 120
++N + G N + +RAPRGD E+++L P+ G E +
Sbjct: 102 AMGLPTQKQNYSINIPGSEFNGSNFITTLRAPRGDATESLLLCVPWKDHIGQYNEA-GVA 160
Query: 121 IAYSVFSLLTRVTWLAKDIIWLVADSQ-YGEYAPVAAWLRDYHTPAFSNLDSLNTETCHV 179
+A S+ + +KDII ++ D YG + + ++ D TP S
Sbjct: 161 LAISLLKYFQGWSLWSKDIILVIFDDPVYGPSSFLTSYF-DQTTPYISYT---------- 209
Query: 180 GNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYL 239
KI RSG++ A L L + N D L + +A+NGQ+PNLDL N +
Sbjct: 210 -----PLKI-----RSGSIQAGLSLELVTTENNSDVLEVLYQATNGQLPNLDLFNTIS-- 257
Query: 240 AVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATL 299
R+ ++ F++ L + G F S + Y +L
Sbjct: 258 -------RIFMQHFNYPLRLQ-----GYDFH---------------ANSGSSYTSRLKSL 290
Query: 300 ASSLYHQALGVPTGPHGAFRDYQVDAITLEFSLR--ISFDRLDRRNDFLLHGGRLIEGVI 357
+ QA+ T H F Y++D +TL ++ SFD + G+ IE
Sbjct: 291 WMGMLTQAVSNVTSAHALFPQYRIDMLTLRMKVKDPFSFD--------MFRFGQAIESTF 342
Query: 358 RSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVA 397
RS+NNLLE HQSFF Y + F+S+G YM + +L A
Sbjct: 343 RSLNNLLEHLHQSFFFYFILDHLHFISIGNYMPSILILAA 382
>sp|P39012|GAA1_YEAST GPI transamidase component GAA1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=GAA1 PE=1 SV=1
Length = 614
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 101/368 (27%), Positives = 164/368 (44%), Gaps = 90/368 (24%)
Query: 37 KYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDG 96
K M N+ + N+ L +F G + + + YG G++ APRGDG
Sbjct: 83 KEMVNMTSMERNNLMGSWLQEF-------GTKTAIYENEQ----YGETLYGVMHAPRGDG 131
Query: 97 KEAIVLVTP-YNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVA 155
EA+VL P +N+ +LG++ + F +R +K+II + +++ A +
Sbjct: 132 TEAMVLAVPWFNSDDEFNIGGAALGVSLARF--FSRWPVWSKNIIVVFSENPR---AALR 186
Query: 156 AWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDT 215
+W+ YHT +LD G++ AA+VL + + +
Sbjct: 187 SWVEAYHT----SLD----------------------LTGGSIEAAVVLDYSSTEDFFEY 220
Query: 216 LGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKM 275
+ I + NG++PNLDL+NI + H +G++V + H L + + + F S K+
Sbjct: 221 VEISYDGLNGELPNLDLVNIAISITEH-EGMKVSL---HGLPSDQLTNN---NFWSRLKI 273
Query: 276 VKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHG--AFRDYQVDAITLEFSLR 333
+ DW L GV PHG AF +++ ++TL+
Sbjct: 274 LCLGIRDWALS----------------------GVKK-PHGNEAFSGWRIQSVTLKAHGN 310
Query: 334 ISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYM---- 389
D + GR+ E + RS+NNLLEKFHQSFF YLL +P +FVS+ Y+
Sbjct: 311 SGHD--------ITTFGRIPEAMFRSINNLLEKFHQSFFFYLLLAPRQFVSISSYLPSAV 362
Query: 390 ---IAFAL 394
IAFA+
Sbjct: 363 ALSIAFAI 370
>sp|Q9X6Y1|RPOB_AQUPY DNA-directed RNA polymerase subunit beta OS=Aquifex pyrophilus
GN=rpoB PE=3 SV=1
Length = 1469
Score = 39.3 bits (90), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 189 SYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRV 248
YG ++GT +L + N E + Y E + +DLINI+ YL R G RV
Sbjct: 462 DYGEYKAGTRITKELLKELFKNYKEIKVKDYTEDEARFLLPIDLINILKYLIDLRHG-RV 520
Query: 249 KVEQFHWLLNSKWVKSLGEVFESLGKM 275
K + L N + V+S+GE+ E+ ++
Sbjct: 521 KKDDIAHLGNRR-VRSVGELLENQARL 546
>sp|O43304|S14L5_HUMAN SEC14-like protein 5 OS=Homo sapiens GN=SEC14L5 PE=2 SV=3
Length = 696
Score = 36.6 bits (83), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 401 VVAASLYAKTLDLNPTSEKDKSATSNELGSVLQSWKWLNSVKTVFVVHFWGATVSLLPYF 460
V +L L +N +K ++ +LG + SW L ++ + + H W V L
Sbjct: 345 VGEEALLRHVLSVNEEGQKRCEGSTRQLGRPISSWTCLLDLEGLNMRHLWRPGVKALLRM 404
Query: 461 ISQIPDSDPTTNFSVWILLSILSLEILRWILVSP 494
I + D+ P T + I+ + +L W L+SP
Sbjct: 405 IEVVEDNYPETLGRLLIVRAPRVFPVL-WTLISP 437
>sp|O67762|RPOB_AQUAE DNA-directed RNA polymerase subunit beta OS=Aquifex aeolicus
(strain VF5) GN=rpoB PE=3 SV=1
Length = 1468
Score = 36.2 bits (82), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 189 SYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRV 248
YG ++GT +L + E + Y E + +DL+NI+ YL R G RV
Sbjct: 462 DYGEYKAGTRVTKDLLKELFKQYKEIKVKDYTEDEARFILPIDLVNILKYLIDLRHG-RV 520
Query: 249 KVEQFHWLLNSKWVKSLGEVFESLGKM 275
K + L N + V+S+GE+ E+ ++
Sbjct: 521 KKDDIAHLGNRR-VRSVGELLENQARL 546
>sp|B8I6G6|RSMH_CLOCE Ribosomal RNA small subunit methyltransferase H OS=Clostridium
cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584
/ H10) GN=rsmH PE=3 SV=1
Length = 313
Score = 36.2 bits (82), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 44/109 (40%), Gaps = 3/109 (2%)
Query: 313 GPHGAFRDYQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFF 372
GPH A R +Q I + L I ++ D L GGRL S+ + + K +
Sbjct: 201 GPHPAKRTFQAIRIEVNNELGILNKTIEDCVDLLKRGGRLCIITFHSLEDRIVKMQYNKM 260
Query: 373 LYLLTSPSKFVSVGVYMIAFALLVAPLPVVAASLYAKTLDLNPTSEKDK 421
+ T P F A+L+ P+V+ + LD NP + K
Sbjct: 261 VNPCTCPPAFPVCACGKKPKAVLINKKPIVSD---IRELDKNPRARSAK 306
>sp|B1XV89|IF2_POLNS Translation initiation factor IF-2 OS=Polynucleobacter necessarius
subsp. necessarius (strain STIR1) GN=infB PE=3 SV=1
Length = 917
Score = 36.2 bits (82), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Query: 463 QIPDSDPTTNFSVWILLSILSLEILRWILVSPSSHIYGLPQGEWATLKSATISSFFIGLG 522
QI +++ TNF V I I + + I V+ +H + KSA + +G+G
Sbjct: 316 QIAEANVDTNFQVPIEPVIRDVHVPETITVAELAHAMAV--------KSAEVIKLLMGMG 367
Query: 523 LMSVINFATAEIGALLMV-PMALMAHPLKLD 552
M IN + A+++V M AH KLD
Sbjct: 368 QMVTINQVLDQDTAMIIVEEMGHKAHAAKLD 398
>sp|Q75EW4|DHYS_ASHGO Deoxyhypusine synthase OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=DYS1 PE=3 SV=1
Length = 382
Score = 34.3 bits (77), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 97 KEAIVLVTPYNAVKGGVRETLSLGIAYSVFS-LLTRVTWLAKDIIWLVADSQYGEYAPVA 155
K I L N + G+RETL + +++ S ++T + +DII +A + GE+
Sbjct: 99 KSTIFLGYTSNLISSGLRETLRYLVQHNMVSAIVTTAGGVEEDIIKCLAPTYLGEFTLKG 158
Query: 156 AWLRDYHTPAFSNLDSLNTETC 177
A LRD NL N C
Sbjct: 159 AALRDKGMNRIGNLLVPNNNYC 180
>sp|Q3AIK3|APT_SYNSC Adenine phosphoribosyltransferase OS=Synechococcus sp. (strain
CC9605) GN=apt PE=3 SV=1
Length = 172
Score = 34.3 bits (77), Expect = 2.9, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 263 KSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALG-VPTGPHGAFRDY 321
+++ EV G++ + PD +GI + ++ GA LAS + LG VP G
Sbjct: 31 EAMAEVISQFGRICDQVKPDLIVGIESRGFIFGAP-LASD---RRLGFVPVRKPGKLPG- 85
Query: 322 QVDAITLEFSLRISFDRLDRRNDFLLHGGRLI 353
+ + L+++L DRL+ + D L H R++
Sbjct: 86 --EVVGLDYALEYGTDRLEIQADALEHSPRVL 115
>sp|O93640|EF2_METTE Elongation factor 2 OS=Methanosarcina thermophila GN=fusA PE=3 SV=1
Length = 730
Score = 33.5 bits (75), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 30/105 (28%)
Query: 224 NGQMPNLDLINIVHYLAVHRQGLRVKVE------QFHWLLNSKWVKS------LGEVFES 271
G MP + V RQ LR V + L+N V S LG+V +
Sbjct: 123 EGTMPQTE--------TVLRQALREHVRPVLFVNKVDRLINELQVDSQEMQVRLGKVIDH 174
Query: 272 LGKMVKTLNPD-----WKLGISAADYVEGAATLASSLYHQALGVP 311
+ K++K +NP+ WK+ D G S+LY+ A+ VP
Sbjct: 175 VNKLIKNMNPEKFKAGWKV-----DAAAGTVAFGSALYNWAISVP 214
>sp|A7I4X4|EF2_METB6 Elongation factor 2 OS=Methanoregula boonei (strain 6A8) GN=fusA
PE=3 SV=1
Length = 731
Score = 33.5 bits (75), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 32/122 (26%)
Query: 218 IYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVE------QFHWLLNSKWVKS------L 265
+ +A G MP + V RQ L+ +V + L+N V L
Sbjct: 117 VLVDAVEGTMPQTE--------TVLRQALKEQVRPVLFINKVDRLVNELKVDETEMQIRL 168
Query: 266 GEVFESLGKMVKTLNPD-----WKLGISAADYVEGAATLASSLYHQALGVPTGPHG--AF 318
G+V + + K++K +N D WKL D +G S+LY+ A+ VP G +F
Sbjct: 169 GKVIDKVNKLIKGMNEDLYNNGWKL-----DASKGTVAFGSALYNWAVSVPYMKKGGVSF 223
Query: 319 RD 320
+D
Sbjct: 224 KD 225
>sp|Q8TRC3|EF2_METAC Elongation factor 2 OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=fusA PE=3 SV=1
Length = 730
Score = 33.5 bits (75), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 30/105 (28%)
Query: 224 NGQMPNLDLINIVHYLAVHRQGLRVKVE------QFHWLLNSKWVKS------LGEVFES 271
G MP + V RQ LR V + L+N V S LG+V +
Sbjct: 123 EGTMPQTE--------TVLRQALREHVRPVLFVNKVDRLINELQVDSQEMQIRLGKVIDH 174
Query: 272 LGKMVKTLNPD-----WKLGISAADYVEGAATLASSLYHQALGVP 311
+ K++K +NP+ WK+ D G S+LY+ A+ VP
Sbjct: 175 VNKLIKNMNPEKFKAGWKV-----DAAAGTVAFGSALYNWAISVP 214
>sp|Q8PUR7|EF2_METMA Elongation factor 2 OS=Methanosarcina mazei (strain ATCC BAA-159 /
DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=fusA PE=3
SV=1
Length = 730
Score = 33.1 bits (74), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 30/105 (28%)
Query: 224 NGQMPNLDLINIVHYLAVHRQGLRVKVE------QFHWLLNSKWVKS------LGEVFES 271
G MP + V RQ LR V + L+N V S LG+V +
Sbjct: 123 EGTMPQTE--------TVLRQALREHVRPVLFVNKVDRLINELQVDSQEMQVRLGKVIDH 174
Query: 272 LGKMVKTLNPD-----WKLGISAADYVEGAATLASSLYHQALGVP 311
+ K++K +NP+ WK+ D G S+LY+ A+ VP
Sbjct: 175 VNKLIKNMNPEKFKAGWKV-----DAAAGTVAFGSALYNWAISVP 214
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 236,484,190
Number of Sequences: 539616
Number of extensions: 9938612
Number of successful extensions: 22851
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 22824
Number of HSP's gapped (non-prelim): 28
length of query: 635
length of database: 191,569,459
effective HSP length: 124
effective length of query: 511
effective length of database: 124,657,075
effective search space: 63699765325
effective search space used: 63699765325
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)