Query 006687
Match_columns 635
No_of_seqs 198 out of 240
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 13:02:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006687.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006687hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04114 Gaa1: Gaa1-like, GPI 100.0 6E-108 1E-112 908.6 48.6 487 80-633 1-503 (504)
2 KOG3566 Glycosylphosphatidylin 100.0 2E-100 4E-105 829.0 42.4 547 1-634 63-616 (617)
3 PRK10199 alkaline phosphatase 98.6 1.1E-06 2.4E-11 94.6 15.8 119 28-161 54-189 (346)
4 PF04389 Peptidase_M28: Peptid 97.4 0.00047 1E-08 66.6 8.0 64 98-161 1-74 (179)
5 PRK06133 glutamate carboxypept 96.9 0.017 3.6E-07 63.7 14.5 104 30-162 61-185 (410)
6 PRK08596 acetylornithine deace 96.8 0.017 3.7E-07 63.7 13.9 125 9-160 14-165 (421)
7 TIGR01892 AcOrn-deacetyl acety 96.8 0.01 2.3E-07 63.3 11.8 121 13-162 2-145 (364)
8 TIGR01883 PepT-like peptidase 96.7 0.017 3.6E-07 62.0 12.4 122 12-160 4-146 (361)
9 TIGR01879 hydantase amidase, h 96.7 0.016 3.5E-07 63.5 12.5 103 28-162 30-140 (401)
10 PRK08588 succinyl-diaminopimel 96.5 0.035 7.5E-07 60.0 13.5 120 9-160 3-147 (377)
11 PRK09133 hypothetical protein; 96.4 0.046 1E-06 61.2 14.2 126 10-162 39-191 (472)
12 PRK12892 allantoate amidohydro 96.4 0.024 5.2E-07 62.0 11.7 100 29-161 39-146 (412)
13 PRK12891 allantoate amidohydro 96.4 0.041 8.8E-07 60.7 13.4 115 11-157 10-144 (414)
14 PRK12890 allantoate amidohydro 96.4 0.024 5.3E-07 62.2 11.5 119 10-160 8-145 (414)
15 PRK05111 acetylornithine deace 96.1 0.088 1.9E-06 56.9 13.6 122 10-161 7-157 (383)
16 PRK07473 carboxypeptidase; Pro 96.1 0.084 1.8E-06 57.6 13.4 127 9-162 12-161 (376)
17 KOG2194 Aminopeptidases of the 96.1 0.024 5.2E-07 67.1 9.6 121 30-159 82-209 (834)
18 PRK09290 allantoate amidohydro 96.0 0.062 1.3E-06 59.1 11.9 101 29-161 37-145 (413)
19 PRK07522 acetylornithine deace 96.0 0.11 2.3E-06 56.2 13.6 125 8-162 4-151 (385)
20 TIGR01910 DapE-ArgE acetylorni 95.9 0.083 1.8E-06 57.1 12.2 125 13-162 3-154 (375)
21 PRK13009 succinyl-diaminopimel 95.8 0.14 3.1E-06 55.1 13.5 122 8-162 2-149 (375)
22 TIGR01893 aa-his-dipept aminoa 95.7 0.1 2.2E-06 58.7 12.6 116 11-161 7-153 (477)
23 PRK07906 hypothetical protein; 95.7 0.11 2.4E-06 57.3 12.3 122 12-161 3-154 (426)
24 PRK08652 acetylornithine deace 95.6 0.12 2.7E-06 54.8 12.2 116 9-161 3-133 (347)
25 PRK12893 allantoate amidohydro 95.6 0.15 3.2E-06 56.0 13.1 102 29-162 40-149 (412)
26 PRK13013 succinyl-diaminopimel 95.5 0.26 5.6E-06 54.2 14.7 129 9-158 15-169 (427)
27 PRK13983 diaminopimelate amino 95.4 0.26 5.6E-06 53.4 13.8 130 9-161 6-166 (400)
28 PRK06837 acetylornithine deace 95.4 0.28 6E-06 54.3 14.2 120 28-158 39-183 (427)
29 PRK06915 acetylornithine deace 95.3 0.34 7.4E-06 53.3 14.7 138 9-159 18-180 (422)
30 PRK06446 hypothetical protein; 95.1 0.29 6.2E-06 54.4 13.4 122 10-162 4-151 (436)
31 PRK13381 peptidase T; Provisio 95.1 0.2 4.3E-06 54.9 12.0 102 28-160 30-184 (404)
32 PRK13004 peptidase; Reviewed 95.0 0.42 9.1E-06 52.3 14.2 117 9-160 16-158 (399)
33 PRK07907 hypothetical protein; 95.0 0.41 8.8E-06 53.4 14.2 101 29-161 44-169 (449)
34 TIGR01882 peptidase-T peptidas 94.9 0.15 3.3E-06 56.1 10.6 100 28-158 32-186 (410)
35 TIGR03176 AllC allantoate amid 94.8 0.32 6.9E-06 53.8 12.7 98 29-158 33-138 (406)
36 PRK07338 hypothetical protein; 94.6 0.5 1.1E-05 51.6 13.5 136 11-162 17-178 (402)
37 PRK04443 acetyl-lysine deacety 94.5 0.49 1.1E-05 50.8 13.0 116 9-162 7-137 (348)
38 PRK09104 hypothetical protein; 94.5 0.54 1.2E-05 52.6 13.7 105 29-162 43-177 (464)
39 TIGR01902 dapE-lys-deAc N-acet 94.2 0.38 8.3E-06 51.2 11.2 110 13-161 2-126 (336)
40 PRK05469 peptidase T; Provisio 94.1 0.56 1.2E-05 51.5 12.4 101 28-159 31-185 (408)
41 PRK08651 succinyl-diaminopimel 94.0 0.54 1.2E-05 51.0 12.1 128 10-162 8-160 (394)
42 PLN02693 IAA-amino acid hydrol 94.0 0.86 1.9E-05 51.0 13.8 117 10-161 49-183 (437)
43 PF05450 Nicastrin: Nicastrin; 94.0 0.97 2.1E-05 46.7 13.1 123 100-241 3-137 (234)
44 PRK13590 putative bifunctional 93.9 0.46 1E-05 55.2 12.0 96 30-157 215-319 (591)
45 COG0624 ArgE Acetylornithine d 93.9 0.88 1.9E-05 49.9 13.6 109 28-163 33-166 (409)
46 PRK13799 unknown domain/N-carb 93.8 0.61 1.3E-05 54.3 12.6 117 10-158 180-320 (591)
47 PRK00466 acetyl-lysine deacety 93.6 0.68 1.5E-05 49.6 11.8 111 9-161 11-136 (346)
48 PRK08201 hypothetical protein; 93.6 0.93 2E-05 50.6 13.2 103 30-162 41-169 (456)
49 PRK15026 aminoacyl-histidine d 93.5 2.8 6E-05 47.7 17.0 181 11-240 10-232 (485)
50 PRK13007 succinyl-diaminopimel 92.8 1.2 2.7E-05 47.4 12.2 113 9-160 8-140 (352)
51 PRK07205 hypothetical protein; 92.8 1.7 3.7E-05 48.4 13.7 98 30-161 42-164 (444)
52 TIGR03526 selenium_YgeY putati 92.7 2.1 4.5E-05 46.8 14.1 116 10-160 15-156 (395)
53 TIGR01880 Ac-peptdase-euk N-ac 92.6 2 4.3E-05 47.0 13.8 121 12-160 13-160 (400)
54 TIGR01891 amidohydrolases amid 92.6 1.6 3.4E-05 47.2 12.8 116 12-160 3-136 (363)
55 PRK08262 hypothetical protein; 91.8 1.4 3E-05 49.7 11.7 123 9-161 45-202 (486)
56 TIGR01246 dapE_proteo succinyl 91.7 2.1 4.5E-05 46.1 12.4 115 12-159 3-143 (370)
57 COG2234 Iap Predicted aminopep 90.3 1.6 3.4E-05 48.3 10.0 82 80-163 182-276 (435)
58 PRK07318 dipeptidase PepV; Rev 90.1 3.3 7.1E-05 46.5 12.5 47 114-161 118-166 (466)
59 TIGR03320 ygeY M20/DapE family 90.1 5 0.00011 43.8 13.7 101 10-145 15-140 (395)
60 PLN02280 IAA-amino acid hydrol 90.0 5.5 0.00012 45.3 14.2 99 28-160 116-232 (478)
61 PRK08554 peptidase; Reviewed 89.8 4.3 9.2E-05 45.5 13.0 99 29-161 27-149 (438)
62 PRK07079 hypothetical protein; 87.8 8.8 0.00019 43.1 13.8 106 30-162 41-177 (469)
63 KOG2526 Predicted aminopeptida 85.4 8.4 0.00018 43.2 11.4 80 80-159 191-287 (555)
64 COG4187 RocB Arginine degradat 84.5 16 0.00035 41.3 13.1 135 9-163 9-189 (553)
65 TIGR01886 dipeptidase dipeptid 83.3 14 0.00029 41.8 12.5 49 114-162 117-166 (466)
66 TIGR01900 dapE-gram_pos succin 82.4 8.9 0.00019 41.8 10.4 115 14-161 2-155 (373)
67 TIGR01887 dipeptidaselike dipe 81.8 12 0.00027 42.0 11.4 47 116-162 108-155 (447)
68 PRK06156 hypothetical protein; 80.7 27 0.00059 40.0 13.9 50 115-164 155-205 (520)
69 KOG2195 Transferrin receptor a 75.7 8.3 0.00018 46.0 7.9 83 80-164 336-424 (702)
70 PRK08737 acetylornithine deace 74.1 37 0.0008 37.0 12.0 114 7-161 5-144 (364)
71 PF09940 DUF2172: Domain of un 73.1 19 0.00042 39.8 9.3 77 81-163 114-190 (386)
72 TIGR03107 glu_aminopep glutamy 70.9 63 0.0014 35.5 12.8 99 114-250 178-284 (350)
73 PRK09864 putative peptidase; P 65.5 1.4E+02 0.0029 33.1 14.0 96 115-251 176-284 (356)
74 PF01546 Peptidase_M20: Peptid 51.0 45 0.00098 31.7 6.6 47 114-160 36-84 (189)
75 KOG3566 Glycosylphosphatidylin 48.6 62 0.0013 37.8 8.0 40 508-547 466-506 (617)
76 PF05343 Peptidase_M42: M42 gl 47.3 79 0.0017 33.8 8.3 99 115-251 135-243 (292)
77 PRK09961 exoaminopeptidase; Pr 36.0 3.3E+02 0.0071 29.7 11.0 100 114-251 166-276 (344)
78 TIGR03106 trio_M42_hydro hydro 33.6 1.7E+02 0.0037 32.0 8.4 66 10-109 5-70 (343)
79 KOG3946 Glutaminyl cyclase [Po 33.4 3.8E+02 0.0082 29.1 10.4 97 28-147 71-179 (338)
80 KOG2275 Aminoacylase ACY1 and 30.4 6.2E+02 0.014 28.7 11.9 100 30-159 49-176 (420)
81 PF10131 PTPS_related: 6-pyruv 30.4 9.8E+02 0.021 28.4 14.9 33 513-545 104-136 (616)
82 KOG2276 Metalloexopeptidases [ 25.5 1E+03 0.022 27.2 12.4 198 30-241 43-252 (473)
83 PF01277 Oleosin: Oleosin; In 22.1 6.7E+02 0.014 23.6 9.0 42 507-548 4-45 (118)
84 COG1363 FrvX Cellulase M and r 21.8 2.8E+02 0.006 30.7 7.3 65 10-108 4-68 (355)
85 TIGR03106 trio_M42_hydro hydro 21.4 5E+02 0.011 28.4 9.2 99 114-251 183-286 (343)
No 1
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=100.00 E-value=5.7e-108 Score=908.60 Aligned_cols=487 Identities=37% Similarity=0.563 Sum_probs=364.9
Q ss_pred cccceEEEEEcCCCCCCceeEEEEEEeccCCCCCcchhhHHHHHHHHHHHhcCCccccceEEEeeCCCCCCchhHHHHHH
Q 006687 80 LYGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLR 159 (635)
Q Consensus 80 ~~G~NvygIlrApRgdgtEAiVL~ap~~~~~~~~~~~~~valaLaLa~y~~r~~~wAKDIIfl~~D~~~~~~~G~~AWL~ 159 (635)
++|+|||||+|||||||||||||+|||++.+++.| ..|+++++||+||+||++||||||||||+|+ +..|+|||||
T Consensus 1 ~~G~nvy~i~rapR~d~tEaivl~~~~~~~~~~~n-~~~v~l~lal~~~~~~~~~wsKDii~l~~~~---~~~g~~awl~ 76 (504)
T PF04114_consen 1 YSGTNVYGILRAPRGDGTEAIVLVVPWRDSDGEYN-AGGVALALALARYFRRQSYWSKDIIFLFTDD---ELAGMQAWLE 76 (504)
T ss_pred CCceEEEEEEecCCCCCceeEEEEEecCCCCcccc-hhhHHHHHHHHHHhhhchhhhccEEEEecCC---cchHHHHHHH
Confidence 37999999999999999999999999998887666 7799999999999999999999999999996 5789999999
Q ss_pred hhcCCCCCCCCccccccccCCCCCcccccccccccchheeeeeEEeecCCCCCcceEEEEeecCCCCCCchhHHHHHHHH
Q 006687 160 DYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYL 239 (635)
Q Consensus 160 aYh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~raG~IqaAl~le~~~~~~~~~~l~I~~eG~NGqLPNLDLiN~v~~i 239 (635)
|||+++.++... ...+.|+|+||||+++|++++ .+++++|++||+|||||||||||+++++
T Consensus 77 ~Yh~~~~~~~~~-----------------~~l~~~~G~i~aAl~le~~~~--~~~~v~i~~eG~NGqLPNLDL~N~~~~i 137 (504)
T PF04114_consen 77 AYHDSNTKGLSS-----------------SPLPLRAGSIQAALVLEYPSD--SFSSVEIKYEGLNGQLPNLDLVNTVVRI 137 (504)
T ss_pred HHhCCCCccccc-----------------cCCCCCCcceeEEEEEEecCC--CccEEEEEEecCCCCCCCchHHHHHHHH
Confidence 999975322111 123469999999999999976 5677999999999999999999999999
Q ss_pred HhhccCceeEEeeeccccchhhhhhhhhhHhhhhhhhhccCCCcccCCChhhHHHHHHHHHHHHHHhhcCCCCCcccccc
Q 006687 240 AVHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFR 319 (635)
Q Consensus 240 a~~~~g~~v~l~~~~~~~~~~w~~~~~~i~e~~g~~~~~~~p~~~~~~~~~~Y~~~l~tll~~m~~qa~G~ptg~Hg~F~ 319 (635)
++ ++|++++++.... .++|. +.++|.+++++|+++|.+||+|.|+|+||+|+
T Consensus 138 ~~-~~gi~~~~~~~~~------------------------~~~~~---~~~~~~~~l~~l~~~~~~~a~g~p~g~H~~f~ 189 (504)
T PF04114_consen 138 AE-KEGIPMGVSLHLQ------------------------PSDWH---SNSDYESRLKTLLRGMLNQALGGPTGPHGAFL 189 (504)
T ss_pred HH-hcCCCcccccccc------------------------ccccc---cccchHHHHHHHHHHHHHhccCCCCCCchhhh
Confidence 97 6887776543111 01111 34589999999999999999999999999999
Q ss_pred ccccceEEEEeeccccccccccchhhHhhhHHHHHHHHHhhchhhhhhhcceeeeeeCCCCceEeechhHHHHHHHHhch
Q 006687 320 DYQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVAPL 399 (635)
Q Consensus 320 ~y~IdAiTL~~~~~~~~~~~~~~~~~~~~lGr~iE~~~RSlNNLLErlHqSfFfYlL~s~~rFVSIg~Ylpp~~Ll~a~l 399 (635)
+||||||||++.+..++ +. .+ +.++||++|+++||+||||||||||||||+|++|+||||||+||||++++++++
T Consensus 190 ~y~I~aiTl~~~~~~~~---~~-~~-~~~~gr~~E~~~RslNNLlE~~HqSff~Yll~~~~~fvsig~Ylp~~~ll~~~~ 264 (504)
T PF04114_consen 190 RYRIDAITLRGVKSTGP---GP-HD-FTAFGRILEGIFRSLNNLLERFHQSFFFYLLLSPSRFVSIGTYLPAAVLLAASL 264 (504)
T ss_pred hcCccEEEEecccCCCC---CC-cC-HHHHHHHHHHHHHHHHHHHHhHhheeeEeEecCCceEeehHHHHHHHHHHHHHH
Confidence 99999999987654321 12 22 468999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCccCCCCCc--cc----ccccccccchhhhHHHHHHHHHHHHHHHhHhHHhhhcCCCCC---c
Q 006687 400 PVVAASLYAKTLDLNPTSEKDKSATS--NE----LGSVLQSWKWLNSVKTVFVVHFWGATVSLLPYFISQIPDSDP---T 470 (635)
Q Consensus 400 ~i~a~~l~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~v~~~h~~G~~~~~lp~~~~~~~~~~~---~ 470 (635)
+++|+.+|.+.+......+++++..+ .. .........+......+++.|+.|+.++++|....++..... .
T Consensus 265 ~i~a~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 344 (504)
T PF04114_consen 265 LISALSLWLKSGASDISLESEYGSSAPSFWFVSLLESFGFSLPFLSVLSPLLVSHLIGFLLFLLPYLGQYIASQHFPSFR 344 (504)
T ss_pred HHHHHHHHHhCCccccccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhh
Confidence 99999999986532221111111000 00 111111234677788888999999998888755444432111 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 006687 471 TNFSVWILLSILSLEILRWILVSPSSHIYGLPQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHPLK 550 (635)
Q Consensus 471 ~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~lk~~~Ll~~~~~l~~la~lNFsLa~~~al~~vPl~l~~~p~~ 550 (635)
....++..++++..++ |.... .|+++|.++|+++|++++++|++++++|||||+++|+++||+|++++|.+
T Consensus 345 ~~~~~~~~lsl~~l~l-------~~~~~--~~~~~~~llk~~~Ll~~~~~L~~la~lNFSLa~l~all~vPl~~~~~~~~ 415 (504)
T PF04114_consen 345 LESVVLLYLSLISLLL-------PFRVV--LPPQQWALLKSFSLLLLGMFLSALATLNFSLAFLVALLLVPLCFIPRPSK 415 (504)
T ss_pred HHHHHHHHHHHHHHHh-------ccccc--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCceecccCCc
Confidence 1122233333311111 32111 35579999999999999999999999999999999999999999888765
Q ss_pred cccccch-hHHHHH-----HHHHHHHhhhcChhhHHHHhhhhhhccccccHHHHHHHHhhh-hhccchhhhhhhhhhHhH
Q 006687 551 LDVRGQS-LRSILR-----MICNLVLGVISFPPATFFVFKGVIEGFSGINAGDFWNWVESL-WAWNSATYLYIGMVHLPC 623 (635)
Q Consensus 551 ~~~~~~~-~~~~~~-----~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~v~~v~~P~ 623 (635)
++...++ ++..+. .++++++.++.+|+......+...+ .+... .+.++.+.++ |+||+|||++||||||||
T Consensus 416 ~~s~~r~~~~~a~L~l~~~~v~~l~ll~ls~~~~~~~~~~~~~~-~~~~~-~~~l~~~v~~~~v~G~Wt~~vv~lv~lP~ 493 (504)
T PF04114_consen 416 QRSTLRSSLRSAVLLLNPPAVVLLVLLFLSFPFFPELLLKLFLD-GWQAV-MDALTFAVFDWWVYGNWTFFVVCLVWLPC 493 (504)
T ss_pred chhhhhHHHHHHHhcccchHHHHHHHHHhhcchHHHHHHHHHhh-hhhhH-HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4311222 122211 1233344455455555544442222 22222 3455555555 599999999999999999
Q ss_pred HHHHHHHhcc
Q 006687 624 WVLCVQILLH 633 (635)
Q Consensus 624 W~~~~~~~~~ 633 (635)
|++||+++|.
T Consensus 494 Wll~w~i~f~ 503 (504)
T PF04114_consen 494 WLLCWNILFW 503 (504)
T ss_pred HHHHHHHHcc
Confidence 9999999984
No 2
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-100 Score=829.02 Aligned_cols=547 Identities=33% Similarity=0.473 Sum_probs=406.7
Q ss_pred CCChhhhHHHHHHHHHHHhhhcCCCCCccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCcccc
Q 006687 1 MLSNQEVSEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSL 80 (635)
Q Consensus 1 ~~~~~~~~~a~~~~~ei~~l~~~~~~~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~ 80 (635)
+|++.+..++.++.||+++.+.+.+. +++.|+...|++.|+|+++|+|... |+ ..+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~r~~~s~---~~~~~~~~~~q~FGl~t~~~n~~~~----------------P~-----e~y 118 (617)
T KOG3566|consen 63 YFRNRDVSDASKLLKDIKNFRKHESQ---VPNAWAEVSMQEFGLETHTQNYSNG----------------PF-----EEY 118 (617)
T ss_pred hhhccchhhhHHHHHHHHHHHHhhcc---cchhHHHHHHHHhCccccccCccCC----------------ch-----hhc
Confidence 46788999999999999998874432 7789999999999999999998642 12 146
Q ss_pred ccceEEEEEcCCCCCCceeEEEEEEeccCCCCCcchhhHHHHHHHHHHHhcCCccccceEEEeeCCCCCCchhHHHHHHh
Q 006687 81 YGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRD 160 (635)
Q Consensus 81 ~G~NvygIlrApRgdgtEAiVL~ap~~~~~~~~~~~~~valaLaLa~y~~r~~~wAKDIIfl~~D~~~~~~~G~~AWL~a 160 (635)
+|+|||||+|||||||||+|||+|||+..+++ | ..++++++||++|+|||+||||||||||+|+ +..|++|||++
T Consensus 119 ~G~NvyGilRAPRgdgtEsivl~vP~~~~~~~-~-~~~v~l~lsla~~f~r~~yWsKDII~v~~d~---~~~g~~AwLea 193 (617)
T KOG3566|consen 119 SGENVYGILRAPRGDGTESIVLVVPYGRSSGS-N-SASVALLLSLADYFSRWVYWSKDIIFVFTDG---PALGLDAWLEA 193 (617)
T ss_pred CCceEEEEEecCCCCCcceEEEEEecccCCCc-c-hhHHHHHHHHHHHhcCCeeecccEEEEEeCC---ccccHHHHHHH
Confidence 79999999999999999999999999887776 4 5699999999999999999999999999997 78999999999
Q ss_pred hcCCCCCCCCccccccccCCCCCcccccccccccchheeeeeEEeecCCCCCcceEEEEeecCCCCCCchhHHHHHHHHH
Q 006687 161 YHTPAFSNLDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMPNLDLINIVHYLA 240 (635)
Q Consensus 161 Yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~raG~IqaAl~le~~~~~~~~~~l~I~~eG~NGqLPNLDLiN~v~~ia 240 (635)
||++.. .. ..|..+ .....|+|+++||+++|+++. .+|+++|.+||+|||||||||||+...++
T Consensus 194 Yhd~~s--~~----~~~~ep--------~~i~~ragal~aal~l~~se~--~~d~v~i~~eglNGqlPNLDlf~i~~~~~ 257 (617)
T KOG3566|consen 194 YHDILS--LT----GISVEP--------DEIQARAGALAAALVLEVSEK--FQDIVEIQYEGLNGQLPNLDLFNITQIFM 257 (617)
T ss_pred hhcccc--cc----cccccc--------ccccccccceeeEEEEEeccc--cceeEEEEecccCCCCCcchHHHHHHHHH
Confidence 999521 11 112222 123369999999999999965 78999999999999999999998877666
Q ss_pred hhccCceeEEeeeccccchhhhhhhhhhHhhhhhhhhccCCCcccCCChhhHHHHHHHHHHHHHHhhcCCCCCccccccc
Q 006687 241 VHRQGLRVKVEQFHWLLNSKWVKSLGEVFESLGKMVKTLNPDWKLGISAADYVEGAATLASSLYHQALGVPTGPHGAFRD 320 (635)
Q Consensus 241 ~~~~g~~v~l~~~~~~~~~~w~~~~~~i~e~~g~~~~~~~p~~~~~~~~~~Y~~~l~tll~~m~~qa~G~ptg~Hg~F~~ 320 (635)
+ |+|+.|++++.. +++||.. .++|.+++++++.+++.||+|+|||+||+|++
T Consensus 258 ~-k~g~~v~l~g~~------------------------~~~d~~s---~~~~~s~l~tl~~~l~~QA~g~ptg~Hglf~~ 309 (617)
T KOG3566|consen 258 Q-KEGLLVTLQGKL------------------------LPLDWHS---NSMYLSGLKTLLLMLLTQASGSPTGIHGLFLR 309 (617)
T ss_pred H-hcCceEEEecCc------------------------CCccccc---CchhhhhHHHHHHHHHHHHhcCCCCccccccc
Confidence 4 799999998633 2355543 34899999999999999999999999999999
Q ss_pred cccceEEEEeeccccccccccchhhHhhhHHHHHHHHHhhchhhhhhhcceeeeeeCCCCceEeechhHHHHHHHHhchH
Q 006687 321 YQVDAITLEFSLRISFDRLDRRNDFLLHGGRLIEGVIRSVNNLLEKFHQSFFLYLLTSPSKFVSVGVYMIAFALLVAPLP 400 (635)
Q Consensus 321 y~IdAiTL~~~~~~~~~~~~~~~~~~~~lGr~iE~~~RSlNNLLErlHqSfFfYlL~s~~rFVSIg~Ylpp~~Ll~a~l~ 400 (635)
|||||+|++...+...+ ..++| +.++||++|+++||+||||||||||||||+++++.||||||.|||++.++++|+.
T Consensus 310 Y~vdaLTlrr~~~~s~~--~~~~d-~~~~gkaiEg~fRsLNNLLEr~HQSFF~YlL~~~~~FiSIg~YMpa~~~Lva~l~ 386 (617)
T KOG3566|consen 310 YRVDALTLRRILSDSFK--QYGYD-LVRFGKAIEGMFRSLNNLLERFHQSFFFYLLLDPSRFISIGLYMPALVILVAPLG 386 (617)
T ss_pred cccceEEeccccccccc--ccchH-HHHHHHHHHHHHHHHHHHHHHHhhheeeeeecCccceeehHHHHHHHHHHHHHHH
Confidence 99999999655433222 12233 6799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc--CCCCCCccCCCCCcccccccccccchhhhHHHHHHHHHHHHHHHhHhHHhhhcC-CCCCchhHHHHH
Q 006687 401 VVAASLYAKTL--DLNPTSEKDKSATSNELGSVLQSWKWLNSVKTVFVVHFWGATVSLLPYFISQIP-DSDPTTNFSVWI 477 (635)
Q Consensus 401 i~a~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~h~~G~~~~~lp~~~~~~~-~~~~~~~~~~~~ 477 (635)
++|+.+|++.. +....+.. +. .....+.+++.-....+...|+.|..+.++|++..+.. .+.|+.....+.
T Consensus 387 l~A~~~wi~l~e~~~~l~~~~--~~----~~~~~~~~~~~~~~~~~~~~~L~~~~~~ll~~l~~~~~f~~~p~~~~~~l~ 460 (617)
T KOG3566|consen 387 LKAYFLWINLHEAKIGLESLA--GH----PYESVPTPVSQDIGLTSVLQWLLGPIVGLLPLLPSQVIFLHIPLGRAIFLV 460 (617)
T ss_pred HHHHHHHHhhhhhCCCccccc--CC----cccccccchhhcccchhhhhhHHHHHHHHHHhhhhhhhhcccccccccccc
Confidence 99999999642 11111110 00 11111223444445556667777777767776544332 122222221111
Q ss_pred H-HHHHHHHHHHHHhhCCCccccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccc
Q 006687 478 L-LSILSLEILRWILVSPSSHIYGLPQGEWATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHPLKLDVRGQ 556 (635)
Q Consensus 478 ~-~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~lk~~~Ll~~~~~l~~la~lNFsLa~~~al~~vPl~l~~~p~~~~~~~~ 556 (635)
. .+.+..+.+...+.++... +....+|.++|++.++...+.++++++.||+++++.+++.||+|+++.|.++-.|.+
T Consensus 461 ~~~s~~~~~~~v~~~~~~v~~--~~~~~n~~ll~lv~~l~~pi~fi~~~~~nf~~~~~aal~~vp~~i~~~~k~~~~r~~ 538 (617)
T KOG3566|consen 461 EPLSYLLLIVFVLPFSSLVLP--GLCLTNFALLKLVTILAVPIQFIMTTLSNFASGEFAALLPVPTLIFLEPKIPILRGR 538 (617)
T ss_pred chHHHHhhhheeecccccccc--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhccCCcccccc
Confidence 1 1111111111111111111 233458999999999999999999999999999999999999999998877665555
Q ss_pred hhHHHHHHHHHHHHhhhcChhhHH-HHhhhhh-hccccccH-HHHHHHHhhhhhccchhhhhhhhhhHhHHHHHHHHhcc
Q 006687 557 SLRSILRMICNLVLGVISFPPATF-FVFKGVI-EGFSGINA-GDFWNWVESLWAWNSATYLYIGMVHLPCWVLCVQILLH 633 (635)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~P~~~~-~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~t~~~v~~v~~P~W~~~~~~~~~ 633 (635)
..+..+..-+..++..+..|+.-. .+.+.++ +...+.|+ +.++.|-.+.|.| .|.+++.+|+|||++||++.|+
T Consensus 539 l~p~~l~~~~~~l~~si~~~~~~~~~~~~~~~~~~~~gl~~~~~~~s~~~~yg~w---~~~~i~~g~lpcwll~~~~~f~ 615 (617)
T KOG3566|consen 539 LAPLVLQAKWLALVLSIAMTAFDEEPLSKHFFLLCFFGLDIWNMLFSCSMRYGAW---LYFVIGTGSLPCWLLCLDGSFK 615 (617)
T ss_pred ccHHHHhhHHHHHHHHHhcchhhHHHHHHHHHHhHHHhhhhHHHHHHHHHHhhhh---hhhheeccccchhheeeccccc
Confidence 555555554444444445554222 2333333 22345555 2445554454555 6999999999999999999998
Q ss_pred C
Q 006687 634 P 634 (635)
Q Consensus 634 ~ 634 (635)
+
T Consensus 616 ~ 616 (617)
T KOG3566|consen 616 K 616 (617)
T ss_pred C
Confidence 6
No 3
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=98.58 E-value=1.1e-06 Score=94.57 Aligned_cols=119 Identities=13% Similarity=0.226 Sum_probs=89.3
Q ss_pred ccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcCCCCCCceeEEEEEEec
Q 006687 28 TTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYN 107 (635)
Q Consensus 28 ~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrApRgdgtEAiVL~ap~~ 107 (635)
..++++||.++|+++|+++..|.|..+ | .+ .... ...+ .....|.||+|.+++ .+.|.++++++||
T Consensus 54 E~~aA~yL~~~f~~lG~~v~~q~f~~~---~---~~-~~~~---g~~~-~~~~~g~nVIa~~~G---~~~~~Ill~AH~D 119 (346)
T PRK10199 54 EMLSADYLRQQFQQMGYQSDIRTFNSR---Y---IY-TARD---NRKN-WHNVTGSTVIAAHEG---KAPQQIIIMAHLD 119 (346)
T ss_pred HHHHHHHHHHHHHHCCCceEeeecccc---c---ee-eccc---cccc-ccCCccceEEEEECC---CCCCeEEEEEEcC
Confidence 556899999999999999998887643 0 00 0000 0011 113579999999865 4458999999998
Q ss_pred cCC-----------------CCCcchhhHHHHHHHHHHHhcCCccccceEEEeeCCCCCCchhHHHHHHhh
Q 006687 108 AVK-----------------GGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDY 161 (635)
Q Consensus 108 ~~~-----------------~~~~~~~~valaLaLa~y~~r~~~wAKDIIfl~~D~~~~~~~G~~AWL~aY 161 (635)
+.. +..++++|++.+|.++|.|++.. ..++|.|+++++|+.+..|.++|++..
T Consensus 120 TV~p~~~~~~~~~~~g~~~~GA~DnasGvA~lLe~ar~l~~~~-~~~~I~fv~~~~EE~Gl~GS~~~~~~~ 189 (346)
T PRK10199 120 TYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAERLKNVP-TEYGIRFVATSGEEEGKLGAENLLKRM 189 (346)
T ss_pred cCCCCCCCccccCCCCcccCCccccHHHHHHHHHHHHHHhhCC-CCCcEEEEEECCcccCcHHHHHHHHhc
Confidence 742 33456789999999999998766 478999999988877899999999863
No 4
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=97.42 E-value=0.00047 Score=66.57 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=50.6
Q ss_pred eeEEEEEEeccCC---------CCCcchhhHHHHHHHHHHHhcCC-ccccceEEEeeCCCCCCchhHHHHHHhh
Q 006687 98 EAIVLVTPYNAVK---------GGVRETLSLGIAYSVFSLLTRVT-WLAKDIIWLVADSQYGEYAPVAAWLRDY 161 (635)
Q Consensus 98 EAiVL~ap~~~~~---------~~~~~~~~valaLaLa~y~~r~~-~wAKDIIfl~~D~~~~~~~G~~AWL~aY 161 (635)
|.|||.+.||+.. +..+|+.|++++|.+||.|++.. =..|+|+|++.|+++.+..|.++|++..
T Consensus 1 e~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~~~~~~~~~i~fv~~~~EE~gl~GS~~~~~~~ 74 (179)
T PF04389_consen 1 EYIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKELKPQPKRTIRFVFFDGEEQGLLGSRAFVEHD 74 (179)
T ss_dssp EEEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHHSTHSSSEEEEEEEESSGGGTSHHHHHHHHHH
T ss_pred CEEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHHhhcccCccEEEEEecccccCccchHHHHHhh
Confidence 7899999998832 33456889999999999999732 2278999999999887899999999943
No 5
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=96.90 E-value=0.017 Score=63.66 Aligned_cols=104 Identities=13% Similarity=0.179 Sum_probs=74.0
Q ss_pred chHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcCCCCCCceeEEEEEEeccC
Q 006687 30 ESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAV 109 (635)
Q Consensus 30 ~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrApRgdgtEAiVL~ap~~~~ 109 (635)
+..+||.++|+++|+++..+.+. ...+.|++|.+... +.-.|++.+.+|..
T Consensus 61 ~~~~~l~~~L~~~G~~v~~~~~~--------------------------~~~~~~lia~~~g~---~~~~ill~~H~D~V 111 (410)
T PRK06133 61 QVAALLAERLKALGAKVERAPTP--------------------------PSAGDMVVATFKGT---GKRRIMLIAHMDTV 111 (410)
T ss_pred HHHHHHHHHHHhCCCeEEEEccC--------------------------CCCCCeEEEEECCC---CCceEEEEeecCcc
Confidence 57999999999999998755321 11367999998542 22469999988765
Q ss_pred CC--------------------CCcchhhHHHHHHHHHHHhcCCc-cccceEEEeeCCCCCCchhHHHHHHhhc
Q 006687 110 KG--------------------GVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVADSQYGEYAPVAAWLRDYH 162 (635)
Q Consensus 110 ~~--------------------~~~~~~~valaLaLa~y~~r~~~-wAKDIIfl~~D~~~~~~~G~~AWL~aYh 162 (635)
.. ..+...+++.+++.++++++... ...||.|+|+-+++....|++.+++++.
T Consensus 112 p~~~~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~~~~~~~ 185 (410)
T PRK06133 112 YLPGMLAKQPFRIDGDRAYGPGIADDKGGVAVILHALKILQQLGFKDYGTLTVLFNPDEETGSPGSRELIAELA 185 (410)
T ss_pred CCCCccCCCCEEEECCEEECCccccchHHHHHHHHHHHHHHHcCCCCCCCEEEEEECCcccCCccHHHHHHHHh
Confidence 21 01334689999999999987654 3579999996444434469999998764
No 6
>PRK08596 acetylornithine deacetylase; Validated
Probab=96.82 E-value=0.017 Score=63.75 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhhhcCCCC--CccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEE
Q 006687 9 EANKLIKELNNLHSNPLG--ATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTV 86 (635)
Q Consensus 9 ~a~~~~~ei~~l~~~~~~--~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~Nvy 86 (635)
+..++.+++-...+-+.+ +..+..+||+++|+++|+++..+... ..+.|++
T Consensus 14 ~~~~~l~~Lv~i~S~s~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~---------------------------~~~~nvi 66 (421)
T PRK08596 14 ELLELLKTLVRFETPAPPARNTNEAQEFIAEFLRKLGFSVDKWDVY---------------------------PNDPNVV 66 (421)
T ss_pred HHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHCCCeEEEEEcc---------------------------CCCceEE
Confidence 444555555554444322 24456899999999999997665421 0246999
Q ss_pred EEEcCCCCCCceeEEEEEEeccCCC------------------------CCcchhhHHHHHHHHHHHhcCC-ccccceEE
Q 006687 87 GIIRAPRGDGKEAIVLVTPYNAVKG------------------------GVRETLSLGIAYSVFSLLTRVT-WLAKDIIW 141 (635)
Q Consensus 87 gIlrApRgdgtEAiVL~ap~~~~~~------------------------~~~~~~~valaLaLa~y~~r~~-~wAKDIIf 141 (635)
+.++.-..++...++|..++|.... ..+...+++.++..++.+++.. -+.+||+|
T Consensus 67 a~~~g~~~~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~ 146 (421)
T PRK08596 67 GVKKGTESDAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAGIELPGDLIF 146 (421)
T ss_pred EEecCCCCCCCcEEEEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence 9986422222246999998875311 1123467888888888887654 36789999
Q ss_pred EeeCCCCCCchhHHHHHHh
Q 006687 142 LVADSQYGEYAPVAAWLRD 160 (635)
Q Consensus 142 l~~D~~~~~~~G~~AWL~a 160 (635)
+++-+++....|++.+++.
T Consensus 147 ~~~~dEE~g~~G~~~~~~~ 165 (421)
T PRK08596 147 QSVIGEEVGEAGTLQCCER 165 (421)
T ss_pred EEEeccccCCcCHHHHHhc
Confidence 9964444445799988875
No 7
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=96.80 E-value=0.01 Score=63.35 Aligned_cols=121 Identities=15% Similarity=0.124 Sum_probs=82.1
Q ss_pred HHHHHHhhhcCCCCCccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcCC
Q 006687 13 LIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAP 92 (635)
Q Consensus 13 ~~~ei~~l~~~~~~~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrAp 92 (635)
+++|+-+..+.+++...+..+||.++|+++|+++..+.... ...+.|+++.+..
T Consensus 2 ~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G~~~~~~~~~~-------------------------~~~~~nl~~~~~~- 55 (364)
T TIGR01892 2 ILTKLVAFDSTSFRPNVDLIDWAQAYLEALGFSVEVQPFPD-------------------------GAEKSNLVAVIGP- 55 (364)
T ss_pred hHHHhhCcCCcCCccHHHHHHHHHHHHHHcCCeEEEEeCCC-------------------------CCccccEEEEecC-
Confidence 45555555554443334789999999999999987664211 1146899998843
Q ss_pred CCCCceeEEEEEEeccCCC-----------------------CCcchhhHHHHHHHHHHHhcCCccccceEEEeeCCCCC
Q 006687 93 RGDGKEAIVLVTPYNAVKG-----------------------GVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYG 149 (635)
Q Consensus 93 RgdgtEAiVL~ap~~~~~~-----------------------~~~~~~~valaLaLa~y~~r~~~wAKDIIfl~~D~~~~ 149 (635)
.+...+++.+..|.... ..+...+++.+|+.++++++.. +.++|.|+|+-+++.
T Consensus 56 --~~~~~i~l~~H~Dtvp~~~~~w~~~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~~-~~~~v~~~~~~~EE~ 132 (364)
T TIGR01892 56 --SGAGGLALSGHTDVVPYDDAAWTRDPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAEQ-LKKPLHLALTADEEV 132 (364)
T ss_pred --CCCCeEEEEcccccccCCCCcCCCCCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhcC-cCCCEEEEEEecccc
Confidence 23457999887755311 0123457899999999998766 488999999644443
Q ss_pred CchhHHHHHHhhc
Q 006687 150 EYAPVAAWLRDYH 162 (635)
Q Consensus 150 ~~~G~~AWL~aYh 162 (635)
+..|++..++++.
T Consensus 133 g~~G~~~~~~~~~ 145 (364)
T TIGR01892 133 GCTGAPKMIEAGA 145 (364)
T ss_pred CCcCHHHHHHhcC
Confidence 4579999988764
No 8
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=96.71 E-value=0.017 Score=62.02 Aligned_cols=122 Identities=11% Similarity=0.097 Sum_probs=81.6
Q ss_pred HHHHHHHhhhcCCCCCccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcC
Q 006687 12 KLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRA 91 (635)
Q Consensus 12 ~~~~ei~~l~~~~~~~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrA 91 (635)
++.+++....+.++ ...+..+||.++|+++|+++..+..... ...+.|+++.++.
T Consensus 4 ~~~~~l~~i~s~s~-~e~~~~~~l~~~l~~~g~~~~~~~~~~~------------------------~~~~~~~~~~~~g 58 (361)
T TIGR01883 4 KYFLELIQIDSESG-KEKAILTYLKKQITKLGIPVSLDEVPAE------------------------VSNDNNLIARLPG 58 (361)
T ss_pred HHHHHHeecCCCCC-cHHHHHHHHHHHHHHcCCEEEEeccccc------------------------cCCCceEEEEEeC
Confidence 34555555544443 2457889999999999999776542110 1246899999965
Q ss_pred CCCCCceeEEEEEEeccCCC-----------------C----CcchhhHHHHHHHHHHHhcCCccccceEEEeeCCCCCC
Q 006687 92 PRGDGKEAIVLVTPYNAVKG-----------------G----VRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGE 150 (635)
Q Consensus 92 pRgdgtEAiVL~ap~~~~~~-----------------~----~~~~~~valaLaLa~y~~r~~~wAKDIIfl~~D~~~~~ 150 (635)
. + +...|++.+..|.... . .+...+++.+|..++++++..-..++|.|+|+-+++..
T Consensus 59 ~-~-~~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~~~~~~v~~~~~~~EE~g 136 (361)
T TIGR01883 59 T-V-KFDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEETPHGTIEFIFTVKEELG 136 (361)
T ss_pred C-C-CCCcEEEEeeccccCCCCCCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccC
Confidence 3 2 2247999998766321 0 13346899999999999865445679999996444445
Q ss_pred chhHHHHHHh
Q 006687 151 YAPVAAWLRD 160 (635)
Q Consensus 151 ~~G~~AWL~a 160 (635)
..|++.|++.
T Consensus 137 ~~G~~~~~~~ 146 (361)
T TIGR01883 137 LIGMRLFDES 146 (361)
T ss_pred chhHhHhChh
Confidence 6789888653
No 9
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=96.70 E-value=0.016 Score=63.49 Aligned_cols=103 Identities=15% Similarity=0.084 Sum_probs=75.5
Q ss_pred ccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcCCCCCCceeEEEEEEec
Q 006687 28 TTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYN 107 (635)
Q Consensus 28 ~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrApRgdgtEAiVL~ap~~ 107 (635)
..+.++||.++|+++|+++..+. . .||+|.++.... +...+++..++|
T Consensus 30 e~~~~~~l~~~~~~~G~~~~~~~------------------------------~-~nl~a~~~g~~~-~~~~l~~~~H~D 77 (401)
T TIGR01879 30 DREAQDLFKKRMRAAGLEVRFDE------------------------------V-GNLIGRKEGTEP-PLEVVLSGSHID 77 (401)
T ss_pred HHHHHHHHHHHHHHCCCEEEEec------------------------------C-CcEEEEecCCCC-CCCEEEEecccc
Confidence 44589999999999999976321 1 399999965322 236899998888
Q ss_pred cCC--CCCcchhhHHHHHHHHHHHhcCCc-cccceEEEeeCCCCC-----CchhHHHHHHhhc
Q 006687 108 AVK--GGVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVADSQYG-----EYAPVAAWLRDYH 162 (635)
Q Consensus 108 ~~~--~~~~~~~~valaLaLa~y~~r~~~-wAKDIIfl~~D~~~~-----~~~G~~AWL~aYh 162 (635)
... +..++..|++.++..++.+++... ..+||+|+++-++++ ...|.+.|+...+
T Consensus 78 tV~~gg~~dg~~gvaa~l~a~~~l~~~g~~~~~~i~~~~~~dEE~~~f~~~~~Gs~~~~~~~~ 140 (401)
T TIGR01879 78 TVVNGGNFDGQLGVLAGIEVVDALKEAYVVPLHPIEVVAFTEEEGSRFPYGMWGSRNMVGLAN 140 (401)
T ss_pred cCCCCCccCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEeCCcCcCcccccccHHHHhcccc
Confidence 763 233445789889999999987654 689999999644443 5678888886543
No 10
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=96.53 E-value=0.035 Score=60.00 Aligned_cols=120 Identities=14% Similarity=0.098 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhhhcCCCCCccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEE
Q 006687 9 EANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGI 88 (635)
Q Consensus 9 ~a~~~~~ei~~l~~~~~~~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygI 88 (635)
++.++++++-...+-+++ .....+||.++|+++|+++..+.+. ..+.|+++.
T Consensus 3 ~~~~~l~~Lv~i~s~s~~-e~~~~~~l~~~l~~~G~~~~~~~~~---------------------------~~~~~l~a~ 54 (377)
T PRK08588 3 EKIQILADIVKINSVNDN-EIEVANYLQDLFAKHGIESKIVKVN---------------------------DGRANLVAE 54 (377)
T ss_pred HHHHHHHHHhcCCCCCCc-HHHHHHHHHHHHHHCCCceEEEecC---------------------------CCCceEEEE
Confidence 345667777766655543 5578999999999999997654321 135799988
Q ss_pred EcCCCCCCceeEEEEEEeccCCCC------------------------CcchhhHHHHHHHHHHHhcC-CccccceEEEe
Q 006687 89 IRAPRGDGKEAIVLVTPYNAVKGG------------------------VRETLSLGIAYSVFSLLTRV-TWLAKDIIWLV 143 (635)
Q Consensus 89 lrApRgdgtEAiVL~ap~~~~~~~------------------------~~~~~~valaLaLa~y~~r~-~~wAKDIIfl~ 143 (635)
++. +...|++.+.+|....+ .+...+++.++..++.+++. ..+.+||.|+|
T Consensus 55 ~g~----~~~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~l~~ 130 (377)
T PRK08588 55 IGS----GSPVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQGQLLNGTIRLLA 130 (377)
T ss_pred eCC----CCceEEEEeeecccCCCCcccCcCCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 732 23689998877653210 12345677777666777654 35689999999
Q ss_pred eCCCCCCchhHHHHHHh
Q 006687 144 ADSQYGEYAPVAAWLRD 160 (635)
Q Consensus 144 ~D~~~~~~~G~~AWL~a 160 (635)
+-+++....|++.++++
T Consensus 131 ~~dEE~g~~G~~~~~~~ 147 (377)
T PRK08588 131 TAGEEVGELGAKQLTEK 147 (377)
T ss_pred EcccccCchhHHHHHhc
Confidence 64444345799999886
No 11
>PRK09133 hypothetical protein; Provisional
Probab=96.45 E-value=0.046 Score=61.24 Aligned_cols=126 Identities=21% Similarity=0.189 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhhcCCCC-CccchHHHHHHHHHhcCCeeeeec-cccCCccCCCccccCCCCCcccccCCccccccceEEE
Q 006687 10 ANKLIKELNNLHSNPLG-ATTESHGIIAKYMSNLGAQVNNHK-FHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVG 87 (635)
Q Consensus 10 a~~~~~ei~~l~~~~~~-~~~~~~~~i~~~l~~lGle~~~~~-f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~Nvyg 87 (635)
..++++++-...+.+.. ...+..+||.++|+++|+++.... +.. .....|+++
T Consensus 39 ~~~~l~~Lv~i~S~s~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~-------------------------~~~~~nli~ 93 (472)
T PRK09133 39 ARDLYKELIEINTTASTGSTTPAAEAMAARLKAAGFADADIEVTGP-------------------------YPRKGNLVA 93 (472)
T ss_pred HHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHcCCCceEEEeccC-------------------------CCCceeEEE
Confidence 33444444444444322 244688999999999999864322 110 013579999
Q ss_pred EEcCCCCCCceeEEEEEEeccCC-----------------------CCCcchhhHHHHHHHHHHHhcCC-ccccceEEEe
Q 006687 88 IIRAPRGDGKEAIVLVTPYNAVK-----------------------GGVRETLSLGIAYSVFSLLTRVT-WLAKDIIWLV 143 (635)
Q Consensus 88 IlrApRgdgtEAiVL~ap~~~~~-----------------------~~~~~~~~valaLaLa~y~~r~~-~wAKDIIfl~ 143 (635)
.++.+.. ...++|..++|..- +..+...+++..+..++++++.. -..++|+|++
T Consensus 94 ~~~g~~~--~~~lll~~H~DtVp~~~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~ 171 (472)
T PRK09133 94 RLRGTDP--KKPILLLAHMDVVEAKREDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREGFKPKRDIILAL 171 (472)
T ss_pred EecCCCC--CCcEEEEeecccCCCChhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcCCCCCCCEEEEE
Confidence 9975432 25799987776421 11244578888888888888754 3467999999
Q ss_pred eCCCC-CCchhHHHHHHhhc
Q 006687 144 ADSQY-GEYAPVAAWLRDYH 162 (635)
Q Consensus 144 ~D~~~-~~~~G~~AWL~aYh 162 (635)
+-+++ ++..|++..++++.
T Consensus 172 ~~dEE~~g~~G~~~l~~~~~ 191 (472)
T PRK09133 172 TGDEEGTPMNGVAWLAENHR 191 (472)
T ss_pred ECccccCccchHHHHHHHHh
Confidence 75555 56789999998764
No 12
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=96.43 E-value=0.024 Score=62.05 Aligned_cols=100 Identities=12% Similarity=0.090 Sum_probs=72.2
Q ss_pred cchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcCCCCCCceeEEEEEEecc
Q 006687 29 TESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNA 108 (635)
Q Consensus 29 ~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrApRgdgtEAiVL~ap~~~ 108 (635)
.+..+||.++|+++|+++...+ . .|+++.++..+ ++ -.+++..+.|.
T Consensus 39 ~~~~~~l~~~l~~~G~~~~~~~------------------------------~-~nl~a~~~g~~-~~-~~l~l~gH~Dt 85 (412)
T PRK12892 39 VAARRRLAAWCEAAGLAVRIDG------------------------------I-GNVFGRLPGPG-PG-PALLVGSHLDS 85 (412)
T ss_pred HHHHHHHHHHHHHcCCEEEEcC------------------------------C-CcEEEEecCCC-CC-CeEEEEccccC
Confidence 4577999999999999975321 1 29999986533 22 46999999988
Q ss_pred CCC--CCcchhhHHHHHHHHHHHhcCC-ccccceEEEee-CCCCC----CchhHHHHHHhh
Q 006687 109 VKG--GVRETLSLGIAYSVFSLLTRVT-WLAKDIIWLVA-DSQYG----EYAPVAAWLRDY 161 (635)
Q Consensus 109 ~~~--~~~~~~~valaLaLa~y~~r~~-~wAKDIIfl~~-D~~~~----~~~G~~AWL~aY 161 (635)
... ..+...|++.++..++.+++.. -+.+||+|+++ |.+.+ ...|.+++++++
T Consensus 86 Vp~~g~~dg~~Gvaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~~~Gs~~~~~~~ 146 (412)
T PRK12892 86 QNLGGRYDGALGVVAGLEAARALNEHGIATRHPLDVVAWCDEEGSRFTPGFLGSRAYAGRL 146 (412)
T ss_pred CCCCCcccchHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCcccccccCccccHHHHHcCC
Confidence 532 1233468888888899998754 36889999996 54432 457999999754
No 13
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=96.41 E-value=0.041 Score=60.67 Aligned_cols=115 Identities=11% Similarity=0.159 Sum_probs=80.4
Q ss_pred HHHHHHHHhhhcC---CCC---------CccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCcc
Q 006687 11 NKLIKELNNLHSN---PLG---------ATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTR 78 (635)
Q Consensus 11 ~~~~~ei~~l~~~---~~~---------~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~ 78 (635)
.++.++++.++.- +.. ...+.++||.++|++.|+++....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~g~~r~~~~~~e~~~~~~l~~~l~~~G~~v~~~~---------------------------- 61 (414)
T PRK12891 10 ERLWASLERMAQIGATPKGGVCRLALTDGDREARDLFVAWARDAGCTVRVDA---------------------------- 61 (414)
T ss_pred HHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEECC----------------------------
Confidence 4788888887662 211 134588999999999999977531
Q ss_pred ccccceEEEEEcCCCCCCceeEEEEEEeccCC--CCCcchhhHHHHHHHHHHHhcCCc-cccceEEEeeCCCCCC-----
Q 006687 79 SLYGINTVGIIRAPRGDGKEAIVLVTPYNAVK--GGVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVADSQYGE----- 150 (635)
Q Consensus 79 ~~~G~NvygIlrApRgdgtEAiVL~ap~~~~~--~~~~~~~~valaLaLa~y~~r~~~-wAKDIIfl~~D~~~~~----- 150 (635)
.| |++|.+... +.+...+++..++|..- +..+...||+.++..++.+++... +.+||.++++-++++.
T Consensus 62 --~g-Nl~a~~~g~-~~~~~~l~~~~H~DtVp~gg~~D~k~Gv~a~l~a~~~l~~~~~~~~~~i~v~~~~dEE~~~f~~~ 137 (414)
T PRK12891 62 --MG-NLFARRAGR-DPDAAPVMTGSHADSQPTGGRYDGIYGVLGGLEVVRALNDAGIETERPVDVVIWTNEEGSRFAPS 137 (414)
T ss_pred --CC-CEEEEecCC-CCCCCeEEEEecccCCCCCccccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEecccccCcCCcc
Confidence 23 999998542 22346899999998753 223456899999999999986543 5889999996444432
Q ss_pred chhHHHH
Q 006687 151 YAPVAAW 157 (635)
Q Consensus 151 ~~G~~AW 157 (635)
..|..+|
T Consensus 138 ~~Gs~~~ 144 (414)
T PRK12891 138 MVGSGVF 144 (414)
T ss_pred cccHHHH
Confidence 3477654
No 14
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=96.40 E-value=0.024 Score=62.24 Aligned_cols=119 Identities=14% Similarity=0.170 Sum_probs=81.5
Q ss_pred HHHHHHHHHhhhcCC----------CC-CccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCcc
Q 006687 10 ANKLIKELNNLHSNP----------LG-ATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTR 78 (635)
Q Consensus 10 a~~~~~ei~~l~~~~----------~~-~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~ 78 (635)
+.++.+++..+..-. .+ ...+..+||.++|+++|+++..+
T Consensus 8 ~~~~~~~~~~~~~i~~~~~~~~~~s~~~~e~~~~~~l~~~l~~~G~~~~~~----------------------------- 58 (414)
T PRK12890 8 GERLLARLEELAAIGRDGPGWTRLALSDEERAARALLAAWMRAAGLEVRRD----------------------------- 58 (414)
T ss_pred HHHHHHHHHHHhccCCCCCceeeccCCHHHHHHHHHHHHHHHHCCCEEEEc-----------------------------
Confidence 446667777665311 12 24468899999999999997632
Q ss_pred ccccceEEEEEcCCCCCCceeEEEEEEeccCC--CCCcchhhHHHHHHHHHHHhcCC-ccccceEEEeeCCCCC-----C
Q 006687 79 SLYGINTVGIIRAPRGDGKEAIVLVTPYNAVK--GGVRETLSLGIAYSVFSLLTRVT-WLAKDIIWLVADSQYG-----E 150 (635)
Q Consensus 79 ~~~G~NvygIlrApRgdgtEAiVL~ap~~~~~--~~~~~~~~valaLaLa~y~~r~~-~wAKDIIfl~~D~~~~-----~ 150 (635)
.+.|+++.+..... +...+++..++|..- +..+...|++.+++.++.+++.. -+.+||+|+++-++++ .
T Consensus 59 --~~~nlia~~~g~~~-~~~~l~~~~H~DtVp~~g~~D~~~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~~~~~~ 135 (414)
T PRK12890 59 --AAGNLFGRLPGRDP-DLPPLMTGSHLDTVPNGGRYDGILGVLAGLEVVAALREAGIRPPHPLEVIAFTNEEGVRFGPS 135 (414)
T ss_pred --CCCcEEEEeCCCCC-CCCEEEEeCcccCCCCCCCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEecccccccCCc
Confidence 12499999965322 335799999998863 22345678999999899888654 3589999999755443 3
Q ss_pred chhHHHHHHh
Q 006687 151 YAPVAAWLRD 160 (635)
Q Consensus 151 ~~G~~AWL~a 160 (635)
..|.+++.+.
T Consensus 136 ~~G~~~~~~~ 145 (414)
T PRK12890 136 MIGSRALAGT 145 (414)
T ss_pred cccHHHHHcc
Confidence 4677777654
No 15
>PRK05111 acetylornithine deacetylase; Provisional
Probab=96.09 E-value=0.088 Score=56.93 Aligned_cols=122 Identities=12% Similarity=0.096 Sum_probs=78.0
Q ss_pred HHHHHHHHHhhhcCCCCC------ccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccc
Q 006687 10 ANKLIKELNNLHSNPLGA------TTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGI 83 (635)
Q Consensus 10 a~~~~~ei~~l~~~~~~~------~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~ 83 (635)
.-++.+|+-...+-++.. ..+..+||.++|+++|+++..+.... ...+.
T Consensus 7 ~i~~l~~lv~i~s~s~~e~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~-------------------------~~~~~ 61 (383)
T PRK05111 7 FIEMYRALIATPSISATDPALDQSNRAVIDLLAGWFEDLGFNVEIQPVPG-------------------------TRGKF 61 (383)
T ss_pred HHHHHHHHhCcCCcCCCCcccccchHHHHHHHHHHHHHCCCeEEEEecCC-------------------------CCCCc
Confidence 445556665554444321 13479999999999999877654210 01357
Q ss_pred eEEEEEcCCCCCCceeEEEEEEeccCCC-----------------------CCcchhhHHHHHHHHHHHhcCCccccceE
Q 006687 84 NTVGIIRAPRGDGKEAIVLVTPYNAVKG-----------------------GVRETLSLGIAYSVFSLLTRVTWLAKDII 140 (635)
Q Consensus 84 NvygIlrApRgdgtEAiVL~ap~~~~~~-----------------------~~~~~~~valaLaLa~y~~r~~~wAKDII 140 (635)
|++|.+.. +.+.+++..++|.... ..+...+++.+++.++.+++.. ..+||+
T Consensus 62 nvia~~g~----~~~~il~~~H~Dvvp~~~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~~-~~~~i~ 136 (383)
T PRK05111 62 NLLASLGS----GEGGLLLAGHTDTVPFDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLTK-LKKPLY 136 (383)
T ss_pred eEEEEeCC----CCCeEEEEeeeceecCCCCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhcC-CCCCeE
Confidence 99999832 2235888776654310 0122356888888888887655 378999
Q ss_pred EEeeCCCCCCchhHHHHHHhh
Q 006687 141 WLVADSQYGEYAPVAAWLRDY 161 (635)
Q Consensus 141 fl~~D~~~~~~~G~~AWL~aY 161 (635)
|+|+-+++....|++..++++
T Consensus 137 ~~~~~~EE~g~~G~~~~~~~~ 157 (383)
T PRK05111 137 ILATADEETSMAGARAFAEAT 157 (383)
T ss_pred EEEEeccccCcccHHHHHhcC
Confidence 999644443457999999865
No 16
>PRK07473 carboxypeptidase; Provisional
Probab=96.07 E-value=0.084 Score=57.55 Aligned_cols=127 Identities=14% Similarity=0.101 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhhhcCCCCC--ccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEE
Q 006687 9 EANKLIKELNNLHSNPLGA--TTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTV 86 (635)
Q Consensus 9 ~a~~~~~ei~~l~~~~~~~--~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~Nvy 86 (635)
+.-++++++-+..+.+++. .....+||.++|+++|+++..+... ...+.|++
T Consensus 12 ~~~~~l~~Lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~--------------------------~~~~~~~~ 65 (376)
T PRK07473 12 AMLAGLRPWVECESPTWDAAAVNRMLDLAARDMAIMGATIERIPGR--------------------------QGFGDCVR 65 (376)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEecCC--------------------------CCCCCeEE
Confidence 3334455555554444331 1245679999999999998765310 01246888
Q ss_pred EEEcCCCCCCceeEEEEEEeccCC--CC------------------CcchhhHHHHHHHHHHHhcCCc-cccceEEEeeC
Q 006687 87 GIIRAPRGDGKEAIVLVTPYNAVK--GG------------------VRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVAD 145 (635)
Q Consensus 87 gIlrApRgdgtEAiVL~ap~~~~~--~~------------------~~~~~~valaLaLa~y~~r~~~-wAKDIIfl~~D 145 (635)
+.++.+.. +.-.+++..++|... +. .+...+++.++..++.+++... ...||.|+++-
T Consensus 66 ~~~~~~~~-~~~~lll~gH~DtV~~~~~~~~~p~~~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~~~~~~~v~~~~~~ 144 (376)
T PRK07473 66 ARFPHPRQ-GEPGILIAGHMDTVHPVGTLEKLPWRREGNKCYGPGILDMKGGNYLALEAIRQLARAGITTPLPITVLFTP 144 (376)
T ss_pred EEeCCCCC-CCCeEEEEecCCCCCCCCCccCCCeEEECCEEEcCchhhchHHHHHHHHHHHHHHHcCCCCCCCEEEEEeC
Confidence 88865322 234689988887431 00 1234678888888888876542 34589999964
Q ss_pred CCCCCchhHHHHHHhhc
Q 006687 146 SQYGEYAPVAAWLRDYH 162 (635)
Q Consensus 146 ~~~~~~~G~~AWL~aYh 162 (635)
+++.+..|++++++++.
T Consensus 145 dEE~g~~g~~~~~~~~~ 161 (376)
T PRK07473 145 DEEVGTPSTRDLIEAEA 161 (376)
T ss_pred CcccCCccHHHHHHHhh
Confidence 44445679999998764
No 17
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=96.07 E-value=0.024 Score=67.13 Aligned_cols=121 Identities=16% Similarity=0.203 Sum_probs=81.7
Q ss_pred chHHHHHHHHHhcCCeeee--eccccCCccCCCccccCCCCCcccccCCccc-cccceEEEEEcCCCCCCceeEEEEEEe
Q 006687 30 ESHGIIAKYMSNLGAQVNN--HKFHPQLNQFHPLHFFSGPDSGVMQENSTRS-LYGINTVGIIRAPRGDGKEAIVLVTPY 106 (635)
Q Consensus 30 ~~~~~i~~~l~~lGle~~~--~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~-~~G~NvygIlrApRgdgtEAiVL~ap~ 106 (635)
..+++|.+++.++.-..+. ++.+-..+ .. ..++ ..++.+.. ...+||.-.+-.--++.+++++|.+.|
T Consensus 82 ~a~~~il~e~~~i~~~~~~~~~~~Evd~q------~~--sg~~-~~~~~~~~Y~~i~NIvVki~~k~~~~~~~lLlnaHf 152 (834)
T KOG2194|consen 82 HASSFILKEVNKIRKGSQSDLYDMEVDLQ------SA--SGSF-ILEGMTLVYQNISNIVVKISPKNGNDKNALLLNAHF 152 (834)
T ss_pred HHHHHHHHHHHHHHhhhhcchhhheecee------ec--ccee-eehhhhheeeeeeeEEEecCCCCCCccceeeeeccc
Confidence 5788998888887544333 11111100 00 0111 11222212 467788877777777778899999999
Q ss_pred ccCC---CCCcchhhHHHHHHHHHHHh-cCCccccceEEEeeCCCCCCchhHHHHHH
Q 006687 107 NAVK---GGVRETLSLGIAYSVFSLLT-RVTWLAKDIIWLVADSQYGEYAPVAAWLR 159 (635)
Q Consensus 107 ~~~~---~~~~~~~~valaLaLa~y~~-r~~~wAKDIIfl~~D~~~~~~~G~~AWL~ 159 (635)
|+.- +..++..+++.+|.++|++. +..-.-+||||||-+.|+..+.|.++|..
T Consensus 153 DSvpt~~gAtDDg~~va~mLe~lRv~s~~~~~l~~~vVFLfNgaEE~~L~gsH~FIt 209 (834)
T KOG2194|consen 153 DSVPTGPGATDDGSGVASMLEALRVLSKSDKLLTHSVVFLFNGAEESGLLGSHAFIT 209 (834)
T ss_pred cccCCCCCCCcchhHHHHHHHHHHHhhcCCCcccccEEEEecCcccchhhhccccee
Confidence 8753 33456789999999999996 45667999999999988878888888855
No 18
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=95.97 E-value=0.062 Score=59.12 Aligned_cols=101 Identities=12% Similarity=0.102 Sum_probs=71.3
Q ss_pred cchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcCCCCCCceeEEEEEEecc
Q 006687 29 TESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNA 108 (635)
Q Consensus 29 ~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrApRgdgtEAiVL~ap~~~ 108 (635)
.+..+||.++|+++|+++..+ ...|+++.++.. +.+...+++..++|.
T Consensus 37 ~~~a~~l~~~l~~~g~~~~~~-------------------------------~~~nl~a~~~g~-~~~~~~l~l~gH~Dt 84 (413)
T PRK09290 37 LQARDLFAEWMEAAGLTVRVD-------------------------------AVGNLFGRLEGR-DPDAPAVLTGSHLDT 84 (413)
T ss_pred HHHHHHHHHHHHHcCCEEEEc-------------------------------CCCcEEEEecCC-CCCCCEEEEecCccC
Confidence 356899999999999997632 124899999542 112357999999988
Q ss_pred CCC--CCcchhhHHHHHHHHHHHhcCCc-cccceEEEeeCCCCC-----CchhHHHHHHhh
Q 006687 109 VKG--GVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVADSQYG-----EYAPVAAWLRDY 161 (635)
Q Consensus 109 ~~~--~~~~~~~valaLaLa~y~~r~~~-wAKDIIfl~~D~~~~-----~~~G~~AWL~aY 161 (635)
... ..+...|++.+++.++.+++... +.+||+|+++-+++. +..|.+.+++.|
T Consensus 85 Vp~~g~~d~k~g~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~G~~~~~~~~ 145 (413)
T PRK09290 85 VPNGGRFDGPLGVLAGLEAVRTLNERGIRPRRPIEVVAFTNEEGSRFGPAMLGSRVFTGAL 145 (413)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHcCCCCCCCeEEEEEcCCccccccCccccHHHHHccc
Confidence 532 23446789988888888886544 578999999744433 346888887554
No 19
>PRK07522 acetylornithine deacetylase; Provisional
Probab=95.97 E-value=0.11 Score=56.24 Aligned_cols=125 Identities=11% Similarity=0.048 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhhhcCCCCCccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEE
Q 006687 8 SEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVG 87 (635)
Q Consensus 8 ~~a~~~~~ei~~l~~~~~~~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~Nvyg 87 (635)
.+.-++.+|+-...+.++....+..+||.++|+++|+++..+.-. ...+.||+|
T Consensus 4 ~~~~~~l~~lv~i~S~s~~~~~~~~~~l~~~l~~~G~~~~~~~~~--------------------------~~~~~nv~a 57 (385)
T PRK07522 4 MSSLDILERLVAFDTVSRDSNLALIEWVRDYLAAHGVESELIPDP--------------------------EGDKANLFA 57 (385)
T ss_pred hhHHHHHHHHhCCCCcCCCccHHHHHHHHHHHHHcCCeEEEEecC--------------------------CCCcccEEE
Confidence 345566666666665554322378999999999999997654210 013578999
Q ss_pred EEcCCCCCCceeEEEEEEeccCCC-----------------------CCcchhhHHHHHHHHHHHhcCCccccceEEEee
Q 006687 88 IIRAPRGDGKEAIVLVTPYNAVKG-----------------------GVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVA 144 (635)
Q Consensus 88 IlrApRgdgtEAiVL~ap~~~~~~-----------------------~~~~~~~valaLaLa~y~~r~~~wAKDIIfl~~ 144 (635)
.++. + + .-.+++.++.|.... ..+...+++.++..++.+++.. +.++|.|+|+
T Consensus 58 ~~~~-~-~-~~~ill~~H~Dtv~~~~~~W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~~-~~~~i~~~~~ 133 (385)
T PRK07522 58 TIGP-A-D-RGGIVLSGHTDVVPVDGQAWTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAAP-LRRPLHLAFS 133 (385)
T ss_pred EeCC-C-C-CCeEEEEeecccccCCCCCCCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhCC-CCCCEEEEEE
Confidence 8742 1 1 246888887764210 0122457888888888888765 4789999996
Q ss_pred CCCCCCchhHHHHHHhhc
Q 006687 145 DSQYGEYAPVAAWLRDYH 162 (635)
Q Consensus 145 D~~~~~~~G~~AWL~aYh 162 (635)
-+++....|++..++++.
T Consensus 134 ~dEE~g~~G~~~l~~~~~ 151 (385)
T PRK07522 134 YDEEVGCLGVPSMIARLP 151 (385)
T ss_pred eccccCCccHHHHHHHhh
Confidence 333333479999988654
No 20
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=95.87 E-value=0.083 Score=57.11 Aligned_cols=125 Identities=13% Similarity=0.094 Sum_probs=78.7
Q ss_pred HHHHHHhhhcCC--CCCccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEc
Q 006687 13 LIKELNNLHSNP--LGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIR 90 (635)
Q Consensus 13 ~~~ei~~l~~~~--~~~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlr 90 (635)
+++++-...+.+ +....+..+||.++|+++|+++........ .. ...+ |+.+..+
T Consensus 3 ~l~~lv~i~s~~~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~~~-------------------~~---~~~~-~~~~~~~ 59 (375)
T TIGR01910 3 LLKDLISIPSVNPPGGNEETIANYIKDLLREFGFSTDVIEITDD-------------------RL---KVLG-KVVVKEP 59 (375)
T ss_pred hHHhhhcCCCCCCCCcCHHHHHHHHHHHHHHCCCceEEEecCch-------------------hc---cccc-ceEEecc
Confidence 456666655522 123557899999999999999875532110 00 0112 4444443
Q ss_pred CCCCCCceeEEEEEEeccCCC------------------------CCcchhhHHHHHHHHHHHhcCC-ccccceEEEeeC
Q 006687 91 APRGDGKEAIVLVTPYNAVKG------------------------GVRETLSLGIAYSVFSLLTRVT-WLAKDIIWLVAD 145 (635)
Q Consensus 91 ApRgdgtEAiVL~ap~~~~~~------------------------~~~~~~~valaLaLa~y~~r~~-~wAKDIIfl~~D 145 (635)
. ..+...|++.+++|.... ..++..+++.++..++.+++.. -+.+||.|+++-
T Consensus 60 g--~~~~~~ill~~H~DtVp~~~~~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~ 137 (375)
T TIGR01910 60 G--NGNEKSLIFNGHYDVVPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQSVV 137 (375)
T ss_pred C--CCCCCEEEEecccccccCCChhhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEEEEc
Confidence 2 112457999888865421 1234567888888888887654 368899999975
Q ss_pred CCCCCchhHHHHHHhhc
Q 006687 146 SQYGEYAPVAAWLRDYH 162 (635)
Q Consensus 146 ~~~~~~~G~~AWL~aYh 162 (635)
+++....|+++++++.+
T Consensus 138 ~EE~g~~G~~~~~~~~~ 154 (375)
T TIGR01910 138 DEESGEAGTLYLLQRGY 154 (375)
T ss_pred CcccCchhHHHHHHcCC
Confidence 55444679999998643
No 21
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=95.77 E-value=0.14 Score=55.07 Aligned_cols=122 Identities=13% Similarity=0.051 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhhhcCCCCCccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEE
Q 006687 8 SEANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVG 87 (635)
Q Consensus 8 ~~a~~~~~ei~~l~~~~~~~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~Nvyg 87 (635)
.+.-++++++-...+.+.. ..+..+||.++|+++|+++..+.. . ...|+++
T Consensus 2 ~~~~~~l~~Lv~ips~s~~-e~~~~~~l~~~l~~~G~~~~~~~~--~--------------------------~~~n~~~ 52 (375)
T PRK13009 2 SDVLELAQDLIRRPSVTPD-DAGCQDLLAERLEALGFTCERMDF--G--------------------------DVKNLWA 52 (375)
T ss_pred chHHHHHHHHhCCCCCCCc-hhhHHHHHHHHHHHcCCeEEEecc--C--------------------------CCcEEEE
Confidence 3455667777766554433 446789999999999999764431 0 1258888
Q ss_pred EEcCCCCCCceeEEEEEEeccCCCC------------------------CcchhhHHHHHHHHHHHhc-CCccccceEEE
Q 006687 88 IIRAPRGDGKEAIVLVTPYNAVKGG------------------------VRETLSLGIAYSVFSLLTR-VTWLAKDIIWL 142 (635)
Q Consensus 88 IlrApRgdgtEAiVL~ap~~~~~~~------------------------~~~~~~valaLaLa~y~~r-~~~wAKDIIfl 142 (635)
.. + .+...+++..++|....+ .++..+++.++..++.+++ ..=+.+||+|+
T Consensus 53 ~~-g---~~~~~i~l~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~i~~~ 128 (375)
T PRK13009 53 RR-G---TEGPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAHPDHKGSIAFL 128 (375)
T ss_pred Ee-c---CCCCEEEEEeecccCCCCCcccCCCCCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 75 2 234579998888764211 1233467766666666654 33357899999
Q ss_pred eeCCCC-CCchhHHHHHHhhc
Q 006687 143 VADSQY-GEYAPVAAWLRDYH 162 (635)
Q Consensus 143 ~~D~~~-~~~~G~~AWL~aYh 162 (635)
++-+++ +...|.+..++.+.
T Consensus 129 ~~~~EE~~~~~G~~~~~~~~~ 149 (375)
T PRK13009 129 ITSDEEGPAINGTVKVLEWLK 149 (375)
T ss_pred EEeecccccccCHHHHHHHHH
Confidence 964333 33458888887653
No 22
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=95.72 E-value=0.1 Score=58.68 Aligned_cols=116 Identities=13% Similarity=0.146 Sum_probs=73.8
Q ss_pred HHHHHHHHhhhcCCCCCccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEc
Q 006687 11 NKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIR 90 (635)
Q Consensus 11 ~~~~~ei~~l~~~~~~~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlr 90 (635)
.++.+++-.+.+-+ ....+.++||.++|+++|+++.... ..|+++.+.
T Consensus 7 ~~~l~~l~~i~s~s-~~e~~~~~~l~~~l~~~G~~~~~~~-------------------------------~~n~~~~~~ 54 (477)
T TIGR01893 7 FKYFEEISKIPRPS-KNEKEVSNFIVNWAKKLGLEVKQDE-------------------------------VGNVLIRKP 54 (477)
T ss_pred HHHHHHHHcCCCCC-ccHHHHHHHHHHHHHHcCCeEEEeC-------------------------------CCeEEEEEc
Confidence 34444444443322 2355789999999999999866331 138999887
Q ss_pred CCCC-CCceeEEEEEEeccCCCC------------------------------CcchhhHHHHHHHHHHHhcCCccccce
Q 006687 91 APRG-DGKEAIVLVTPYNAVKGG------------------------------VRETLSLGIAYSVFSLLTRVTWLAKDI 139 (635)
Q Consensus 91 ApRg-dgtEAiVL~ap~~~~~~~------------------------------~~~~~~valaLaLa~y~~r~~~wAKDI 139 (635)
+..+ .+...+++..+.|..... .+...|++.+++.++. ....-+||
T Consensus 55 ~~~g~~~~~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~---~~~~~~~i 131 (477)
T TIGR01893 55 ATPGYENHPPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED---NNLKHPPL 131 (477)
T ss_pred CCCCCCCCCeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc---CCCCCCCE
Confidence 6444 234679998888753211 1445677777776553 33345799
Q ss_pred EEEeeCCCCCCchhHHHHHHhh
Q 006687 140 IWLVADSQYGEYAPVAAWLRDY 161 (635)
Q Consensus 140 Ifl~~D~~~~~~~G~~AWL~aY 161 (635)
.++|+-+++....|.+++.++.
T Consensus 132 ~~~~~~dEE~g~~Gs~~l~~~~ 153 (477)
T TIGR01893 132 ELLFTVDEETGMDGALGLDENW 153 (477)
T ss_pred EEEEEeccccCchhhhhcChhh
Confidence 9999744444567889887654
No 23
>PRK07906 hypothetical protein; Provisional
Probab=95.65 E-value=0.11 Score=57.29 Aligned_cols=122 Identities=14% Similarity=0.153 Sum_probs=79.7
Q ss_pred HHHHHHHhhhcCCC-----CCccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEE
Q 006687 12 KLIKELNNLHSNPL-----GATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTV 86 (635)
Q Consensus 12 ~~~~ei~~l~~~~~-----~~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~Nvy 86 (635)
++.+|+=.+.+-+. ....+..+||.++|+++|+++..+.-. ....|++
T Consensus 3 ~ll~~Lv~i~S~s~~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~---------------------------~~~~nv~ 55 (426)
T PRK07906 3 DLCSELIRIDTTNTGDGTGKGEREAAEYVAEKLAEVGLEPTYLESA---------------------------PGRANVV 55 (426)
T ss_pred HHHHHHhcccccCCCCCCCchHHHHHHHHHHHHHhCCCCeEEeecC---------------------------CCceEEE
Confidence 45566655554431 224568899999999999997754310 1246999
Q ss_pred EEEcCCCCCCceeEEEEEEeccCCC-----------------------CCcchhhHHHHHHHHHHHhcCC-ccccceEEE
Q 006687 87 GIIRAPRGDGKEAIVLVTPYNAVKG-----------------------GVRETLSLGIAYSVFSLLTRVT-WLAKDIIWL 142 (635)
Q Consensus 87 gIlrApRgdgtEAiVL~ap~~~~~~-----------------------~~~~~~~valaLaLa~y~~r~~-~wAKDIIfl 142 (635)
+.++.. ..+...+++..++|.... ..+...+++.++..++++++.. -..++|.|+
T Consensus 56 ~~~~g~-~~~~~~lll~~H~DtVp~~~~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~~~~~~~i~~~ 134 (426)
T PRK07906 56 ARLPGA-DPSRPALLVHGHLDVVPAEAADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTGRRPPRDLVFA 134 (426)
T ss_pred EEEeCC-CCCCCcEEEEcccccCCCCcccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcCCCCCccEEEE
Confidence 988642 123456888776654321 1123458899999999998654 346799999
Q ss_pred ee-CCCCCCchhHHHHHHhh
Q 006687 143 VA-DSQYGEYAPVAAWLRDY 161 (635)
Q Consensus 143 ~~-D~~~~~~~G~~AWL~aY 161 (635)
++ |.+.+...|++..++.+
T Consensus 135 ~~~dEE~g~~~g~~~l~~~~ 154 (426)
T PRK07906 135 FVADEEAGGTYGAHWLVDNH 154 (426)
T ss_pred EecCcccchhhhHHHHHHHH
Confidence 96 54433446888888765
No 24
>PRK08652 acetylornithine deacetylase; Provisional
Probab=95.64 E-value=0.12 Score=54.77 Aligned_cols=116 Identities=17% Similarity=0.148 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhhhcCCCCCccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEE
Q 006687 9 EANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGI 88 (635)
Q Consensus 9 ~a~~~~~ei~~l~~~~~~~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygI 88 (635)
++-++.+++....+.+++ ..+..+||.++|+++|+++..+.. + ...|+++
T Consensus 3 ~~~~~~~~lv~ips~s~~-e~~~~~~l~~~l~~~G~~v~~~~~------------------------~----~~~~~~~- 52 (347)
T PRK08652 3 RAKELLKQLVKIPSPSGQ-EDEIALHIMEFLESLGYDVHIESD------------------------G----EVINIVV- 52 (347)
T ss_pred hHHHHHHHHhcCCCCCCc-hHHHHHHHHHHHHHcCCEEEEEec------------------------C----ceeEEEc-
Confidence 445667777776655543 457899999999999999764320 0 0234443
Q ss_pred EcCCCCCCceeEEEEEEeccCC---------------CCCcchhhHHHHHHHHHHHhcCCccccceEEEeeCCCCCCchh
Q 006687 89 IRAPRGDGKEAIVLVTPYNAVK---------------GGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAP 153 (635)
Q Consensus 89 lrApRgdgtEAiVL~ap~~~~~---------------~~~~~~~~valaLaLa~y~~r~~~wAKDIIfl~~D~~~~~~~G 153 (635)
+. .-.+++.+.+|... +..+...+++.++..++.+++.. -..||+|+++-+++....|
T Consensus 53 -----~~-~~~i~l~~H~D~vp~~~~~~~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~~-~~~~v~~~~~~dEE~g~~G 125 (347)
T PRK08652 53 -----NS-KAELFVEVHYDTVPVRAEFFVDGVYVYGTGACDAKGGVAAILLALEELGKEF-EDLNVGIAFVSDEEEGGRG 125 (347)
T ss_pred -----CC-CCEEEEEccccccCCCCCCEEECCEEEeccchhhhHHHHHHHHHHHHHhhcc-cCCCEEEEEecCcccCChh
Confidence 12 23688888776531 22344568888888888887542 2459999996444434469
Q ss_pred HHHHHHhh
Q 006687 154 VAAWLRDY 161 (635)
Q Consensus 154 ~~AWL~aY 161 (635)
++++++++
T Consensus 126 ~~~~~~~~ 133 (347)
T PRK08652 126 SALFAERY 133 (347)
T ss_pred HHHHHHhc
Confidence 99999875
No 25
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=95.63 E-value=0.15 Score=55.99 Aligned_cols=102 Identities=13% Similarity=0.111 Sum_probs=71.0
Q ss_pred cchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcCCCCCCceeEEEEEEecc
Q 006687 29 TESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNA 108 (635)
Q Consensus 29 ~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrApRgdgtEAiVL~ap~~~ 108 (635)
.+..+||.++|+++|+++..+. ..|+++.++... .+...++|..++|.
T Consensus 40 ~~~~~~l~~~l~~~G~~~~~~~-------------------------------~~n~~a~~~g~~-~~~~~l~l~~H~Dt 87 (412)
T PRK12893 40 REARDLLAQWMEEAGLTVSVDA-------------------------------IGNLFGRRAGTD-PDAPPVLIGSHLDT 87 (412)
T ss_pred HHHHHHHHHHHHHcCCEEEEcC-------------------------------CCcEEEEeCCCC-CCCCEEEEEecccC
Confidence 3457999999999999975321 128999886422 12357999999987
Q ss_pred CCC--CCcchhhHHHHHHHHHHHhcCCc-cccceEEEeeCCCCCC-----chhHHHHHHhhc
Q 006687 109 VKG--GVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVADSQYGE-----YAPVAAWLRDYH 162 (635)
Q Consensus 109 ~~~--~~~~~~~valaLaLa~y~~r~~~-wAKDIIfl~~D~~~~~-----~~G~~AWL~aYh 162 (635)
... ..+...|++.+|..++.+++... +.+||+|+++-+++.. ..|...+.+++.
T Consensus 88 Vp~~g~~dgk~gvaa~l~a~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~G~~~~~~~~~ 149 (412)
T PRK12893 88 QPTGGRFDGALGVLAALEVVRTLNDAGIRTRRPIEVVSWTNEEGARFAPAMLGSGVFTGALP 149 (412)
T ss_pred CCCCCcccchhhHHHHHHHHHHHHHcCCCCCCCeEEEEEccccccccccccccHHHHhCcCC
Confidence 532 22335689999999999987654 6889999996443332 457777765543
No 26
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=95.54 E-value=0.26 Score=54.21 Aligned_cols=129 Identities=15% Similarity=0.067 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhhhcCC--CCCccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEE
Q 006687 9 EANKLIKELNNLHSNP--LGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTV 86 (635)
Q Consensus 9 ~a~~~~~ei~~l~~~~--~~~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~Nvy 86 (635)
+..++++++-...+-+ +....+..+||.++|+++|+++..+..... | ... . ...+.|++
T Consensus 15 ~~~~~l~~Lv~i~S~~~~g~~e~~~~~~l~~~l~~~G~~~~~~~~~~~-----~-----------~~~-~--~~~~~nli 75 (427)
T PRK13013 15 DLVALTQDLIRIPTLNPPGRAYREICEFLAARLAPRGFEVELIRAEGA-----P-----------GDS-E--TYPRWNLV 75 (427)
T ss_pred HHHHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHHCCCceEEEecCCC-----C-----------ccc-c--cCCcceEE
Confidence 3444455555443332 112246889999999999999876542110 0 000 0 12367999
Q ss_pred EEEcCCCCCCceeEEEEEEeccCCC----------------------CCcchhhHHHHHHHHHHHhcCCc-cccceEEEe
Q 006687 87 GIIRAPRGDGKEAIVLVTPYNAVKG----------------------GVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLV 143 (635)
Q Consensus 87 gIlrApRgdgtEAiVL~ap~~~~~~----------------------~~~~~~~valaLaLa~y~~r~~~-wAKDIIfl~ 143 (635)
|.++.. .+...|++...+|..-. ..+...+++.++..++.+++..+ ..+||+|++
T Consensus 76 a~~~g~--~~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~ 153 (427)
T PRK13013 76 ARRQGA--RDGDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVYPDFAGSIEISG 153 (427)
T ss_pred EEecCC--CCCCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhCCCCCccEEEEE
Confidence 998542 22357999887765310 11224678888888899987543 478999999
Q ss_pred e-CCCCCCchhHHHHH
Q 006687 144 A-DSQYGEYAPVAAWL 158 (635)
Q Consensus 144 ~-D~~~~~~~G~~AWL 158 (635)
+ |.+.+...|.+..+
T Consensus 154 ~~dEE~g~~~g~~~l~ 169 (427)
T PRK13013 154 TADEESGGFGGVAYLA 169 (427)
T ss_pred EeccccCChhHHHHHH
Confidence 6 54333333444443
No 27
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=95.37 E-value=0.26 Score=53.40 Aligned_cols=130 Identities=14% Similarity=0.113 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhhhcCCCC----CccchHHHHHHHHHhcCCe-eeeeccccCCccCCCccccCCCCCcccccCCccccccc
Q 006687 9 EANKLIKELNNLHSNPLG----ATTESHGIIAKYMSNLGAQ-VNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGI 83 (635)
Q Consensus 9 ~a~~~~~ei~~l~~~~~~----~~~~~~~~i~~~l~~lGle-~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~ 83 (635)
+..++++++-...+-+.+ +..+..+||.++|+++|++ +..+..... + .. ...+.
T Consensus 6 ~~~~~l~~lv~i~s~s~~~~~~~e~~~~~~l~~~l~~~G~~~~~~~~~~~~---------------~--~~----~~~~~ 64 (400)
T PRK13983 6 EMIELLSELIAIPAVNPDFGGEGEKEKAEYLESLLKEYGFDEVERYDAPDP---------------R--VI----EGVRP 64 (400)
T ss_pred HHHHHHHHHhCcCCCCCCCCCccHHHHHHHHHHHHHHcCCceEEEEecCCc---------------c--cc----cCCCc
Confidence 455666666665554321 2346789999999999998 655442110 0 00 01258
Q ss_pred eEEEEEcCCCCCCceeEEEEEEeccCCCC------------------------CcchhhHHHHHHHHHHHhcCC-ccccc
Q 006687 84 NTVGIIRAPRGDGKEAIVLVTPYNAVKGG------------------------VRETLSLGIAYSVFSLLTRVT-WLAKD 138 (635)
Q Consensus 84 NvygIlrApRgdgtEAiVL~ap~~~~~~~------------------------~~~~~~valaLaLa~y~~r~~-~wAKD 138 (635)
|+++.++... +...+++..++|..-.+ .++..+++.++..++.+++.. -+-+|
T Consensus 65 nl~~~~~g~~--~~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~~~~~~~ 142 (400)
T PRK13983 65 NIVAKIPGGD--GKRTLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLGIRPKYN 142 (400)
T ss_pred cEEEEecCCC--CCCeEEEEeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhCCCCCCc
Confidence 9999986532 22389998888664211 122467777777777776543 46789
Q ss_pred eEEEee-CCCCCCchhHHHHHHhh
Q 006687 139 IIWLVA-DSQYGEYAPVAAWLRDY 161 (635)
Q Consensus 139 IIfl~~-D~~~~~~~G~~AWL~aY 161 (635)
|.|+|+ |.+.+...|++..++++
T Consensus 143 v~~~~~~dEE~g~~~g~~~~~~~~ 166 (400)
T PRK13983 143 LGLAFVSDEETGSKYGIQYLLKKH 166 (400)
T ss_pred EEEEEEeccccCCcccHHHHHhhc
Confidence 999996 44334445888888764
No 28
>PRK06837 acetylornithine deacetylase; Provisional
Probab=95.36 E-value=0.28 Score=54.32 Aligned_cols=120 Identities=14% Similarity=0.099 Sum_probs=69.5
Q ss_pred ccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcCCCCCCceeEEEEEEec
Q 006687 28 TTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYN 107 (635)
Q Consensus 28 ~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrApRgdgtEAiVL~ap~~ 107 (635)
..+..+||.++|+++|+++...+...... ...+ ...+..+....+.||++.++.-+.++ -.+++..++|
T Consensus 39 e~~~~~~l~~~l~~~G~~~~~~~~~~~~~-------~~~~---~~~~~~~~~~~~~nl~a~~~g~~~~~-~~il~~gH~D 107 (427)
T PRK06837 39 EAPCQDFLARAFRERGYEVDRWSIDPDDL-------KSHP---GAGPVEIDYSGAPNVVGTYRPAGKTG-RSLILQGHID 107 (427)
T ss_pred HHHHHHHHHHHHHHCCCceEEecCCHHHh-------hhcc---cccccccccCCCceEEEEecCCCCCC-CeEEEEeecc
Confidence 45689999999999999976554321100 0000 00000001124689999997422222 4799998887
Q ss_pred cCCC------------------------CCcchhhHHHHHHHHHHHhcCCc-cccceEEEeeCCCCCCchhHHHHH
Q 006687 108 AVKG------------------------GVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVADSQYGEYAPVAAWL 158 (635)
Q Consensus 108 ~~~~------------------------~~~~~~~valaLaLa~y~~r~~~-wAKDIIfl~~D~~~~~~~G~~AWL 158 (635)
.... ..+...+++.++..++.+++... +.+||+|+++-+++....|...-+
T Consensus 108 vVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~~~~~~~~i~~~~~~dEE~~g~g~~~~~ 183 (427)
T PRK06837 108 VVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAAGLAPAARVHFQSVIEEESTGNGALSTL 183 (427)
T ss_pred cCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCcEEEEEEeccccCCHhHHHHH
Confidence 5421 12334577777777788887543 578999999633332233544433
No 29
>PRK06915 acetylornithine deacetylase; Validated
Probab=95.33 E-value=0.34 Score=53.29 Aligned_cols=138 Identities=19% Similarity=0.159 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhhhcCCCCCccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEE
Q 006687 9 EANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGI 88 (635)
Q Consensus 9 ~a~~~~~ei~~l~~~~~~~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygI 88 (635)
+..++.+++....+-+++ ..+..+||+++|+++|+++..+.........+| .|.. .......+.|++|.
T Consensus 18 ~~~~~l~~lv~ips~s~~-e~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~~~--~~~~--------~~~~~~~~~nlia~ 86 (422)
T PRK06915 18 EAVKLLKRLIQEKSVSGD-ESGAQAIVIEKLRELGLDLDIWEPSFKKLKDHP--YFVS--------PRTSFSDSPNIVAT 86 (422)
T ss_pred HHHHHHHHHHhCCCCCcc-hHHHHHHHHHHHHhcCCeeEEeecchhhhhccc--ccCC--------cccccCCCceEEEE
Confidence 344555555555444332 456789999999999999876543321000011 0000 00000146899999
Q ss_pred EcCCCCCCceeEEEEEEeccCCC------------------------CCcchhhHHHHHHHHHHHhcCCc-cccceEEEe
Q 006687 89 IRAPRGDGKEAIVLVTPYNAVKG------------------------GVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLV 143 (635)
Q Consensus 89 lrApRgdgtEAiVL~ap~~~~~~------------------------~~~~~~~valaLaLa~y~~r~~~-wAKDIIfl~ 143 (635)
++.. +.+ ..+++.+.+|..-. ..+...+++.++..++.+++..+ ...+|+|++
T Consensus 87 ~~g~-~~~-~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~~~~~~~v~~~~ 164 (422)
T PRK06915 87 LKGS-GGG-KSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESGIELKGDVIFQS 164 (422)
T ss_pred EcCC-CCC-CeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 9632 223 47888887755311 01223467667777788887653 467999999
Q ss_pred eCCCCCCchhHHHHHH
Q 006687 144 ADSQYGEYAPVAAWLR 159 (635)
Q Consensus 144 ~D~~~~~~~G~~AWL~ 159 (635)
+=+++....|..+.++
T Consensus 165 ~~dEE~g~~G~~~~~~ 180 (422)
T PRK06915 165 VIEEESGGAGTLAAIL 180 (422)
T ss_pred ecccccCCcchHHHHh
Confidence 6333322346665554
No 30
>PRK06446 hypothetical protein; Provisional
Probab=95.12 E-value=0.29 Score=54.41 Aligned_cols=122 Identities=13% Similarity=0.102 Sum_probs=77.7
Q ss_pred HHHHHHHHHhhhcCCCCCc--cchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEE
Q 006687 10 ANKLIKELNNLHSNPLGAT--TESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVG 87 (635)
Q Consensus 10 a~~~~~ei~~l~~~~~~~~--~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~Nvyg 87 (635)
+-++++|+-...+.+.... .+..+||.++|+++|+++..++. ..+.|+++
T Consensus 4 ~~~~l~eLV~i~S~s~~~~~~~~~a~~l~~~l~~~G~~ve~~~~----------------------------~~~~~lia 55 (436)
T PRK06446 4 ELYTLIEFLKKPSISATGEGIEETANYLKDTMEKLGIKANIERT----------------------------KGHPVVYG 55 (436)
T ss_pred HHHHHHHHhCCCCCCCCcHhHHHHHHHHHHHHHHCCCeEEEEec----------------------------CCCCEEEE
Confidence 3444555555544443222 47889999999999999875531 02468998
Q ss_pred EEcCCCCCCceeEEEEEEeccCC------------------------CCCcchhhHHHHHHHHHHHhcCCccccceEEEe
Q 006687 88 IIRAPRGDGKEAIVLVTPYNAVK------------------------GGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLV 143 (635)
Q Consensus 88 IlrApRgdgtEAiVL~ap~~~~~------------------------~~~~~~~~valaLaLa~y~~r~~~wAKDIIfl~ 143 (635)
.+..+ +.-.+++..++|... +..+...+++.++..++.+++..-..++|.|+|
T Consensus 56 ~~~~~---~~~~vll~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~~~~~~i~~~~ 132 (436)
T PRK06446 56 EINVG---AKKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDKHKLNVNVKFLY 132 (436)
T ss_pred EecCC---CCCEEEEEecccCCCCCccccccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHcCCCCCCEEEEE
Confidence 87532 234689988776621 001335678777766666654444578999999
Q ss_pred eCCCCCCchhHHHHHHhhc
Q 006687 144 ADSQYGEYAPVAAWLRDYH 162 (635)
Q Consensus 144 ~D~~~~~~~G~~AWL~aYh 162 (635)
+-+++.+..|++++++++.
T Consensus 133 ~~dEE~g~~g~~~~l~~~~ 151 (436)
T PRK06446 133 EGEEEIGSPNLEDFIEKNK 151 (436)
T ss_pred EcccccCCHhHHHHHHHHH
Confidence 6333334579999998853
No 31
>PRK13381 peptidase T; Provisional
Probab=95.11 E-value=0.2 Score=54.91 Aligned_cols=102 Identities=13% Similarity=0.082 Sum_probs=67.7
Q ss_pred ccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcCCCCCCceeEEEEEEec
Q 006687 28 TTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYN 107 (635)
Q Consensus 28 ~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrApRgdgtEAiVL~ap~~ 107 (635)
..+.++||.++|+++|+++...+ .--||+|.+++. +++...+++..++|
T Consensus 30 ~~~~~~~l~~~l~~~G~~~~~~~------------------------------~~~nvi~~~~g~-~~~~~~lll~~H~D 78 (404)
T PRK13381 30 QHELAKLLADELRELGLEDIVID------------------------------EHAIVTAKLPGN-TPGAPRIGFIAHLD 78 (404)
T ss_pred HHHHHHHHHHHHHHcCCCcEEEc------------------------------CCeEEEEEEecC-CCCCCeEEEEEEec
Confidence 44689999999999999744210 012999998642 12336899988776
Q ss_pred cCC-------------------------------------------------CC----CcchhhHHHHHHHHHHHhcCCc
Q 006687 108 AVK-------------------------------------------------GG----VRETLSLGIAYSVFSLLTRVTW 134 (635)
Q Consensus 108 ~~~-------------------------------------------------~~----~~~~~~valaLaLa~y~~r~~~ 134 (635)
..- +. .+...+++.++..++.+++..-
T Consensus 79 ~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GrG~~~~g~DmKgg~aa~l~a~~~l~~~~~ 158 (404)
T PRK13381 79 TVDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFSDGTSVLGADNKAAIAVVMTLLENLTENEV 158 (404)
T ss_pred CCCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeCCCccccccccHHHHHHHHHHHHHHHhcCC
Confidence 541 11 2334567877877888876544
Q ss_pred cccceEEEeeCCCCCCchhHHHHHHh
Q 006687 135 LAKDIIWLVADSQYGEYAPVAAWLRD 160 (635)
Q Consensus 135 wAKDIIfl~~D~~~~~~~G~~AWL~a 160 (635)
...||+|+|+-+++....|+++++.+
T Consensus 159 ~~g~i~~~~~~dEE~g~~G~~~~~~~ 184 (404)
T PRK13381 159 EHGDIVVAFVPDEEIGLRGAKALDLA 184 (404)
T ss_pred CCCCEEEEEEcccccccccHHHHHHh
Confidence 46699999974444345799998764
No 32
>PRK13004 peptidase; Reviewed
Probab=95.01 E-value=0.42 Score=52.28 Aligned_cols=117 Identities=11% Similarity=0.052 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhhhcCCCCCccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEE
Q 006687 9 EANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGI 88 (635)
Q Consensus 9 ~a~~~~~ei~~l~~~~~~~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygI 88 (635)
+..++.+++-...+-++. ..+..++|.++|+++|+++...+ ...|+++.
T Consensus 16 ~~~~~l~~lv~ips~s~~-e~~~a~~l~~~l~~~G~~~~~~~------------------------------~~~n~~a~ 64 (399)
T PRK13004 16 DMTRFLRDLIRIPSESGD-EKRVVKRIKEEMEKVGFDKVEID------------------------------PMGNVLGY 64 (399)
T ss_pred HHHHHHHHHhcCCCCCCc-hHHHHHHHHHHHHHcCCcEEEEc------------------------------CCCeEEEE
Confidence 344444555444433332 45688999999999999743110 12378887
Q ss_pred EcCCCCCCceeEEEEEEeccCCCC------------------------CcchhhHHHHHHHHHHHhcCCc-cccceEEEe
Q 006687 89 IRAPRGDGKEAIVLVTPYNAVKGG------------------------VRETLSLGIAYSVFSLLTRVTW-LAKDIIWLV 143 (635)
Q Consensus 89 lrApRgdgtEAiVL~ap~~~~~~~------------------------~~~~~~valaLaLa~y~~r~~~-wAKDIIfl~ 143 (635)
++. +...+++.+.+|..... .++..+++.++..++.+++... +.++|++++
T Consensus 65 ~~~----~~~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~i~~~~ 140 (399)
T PRK13004 65 IGH----GKKLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDLGLDDEYTLYVTG 140 (399)
T ss_pred ECC----CCcEEEEEeccCccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhcCCCCCCeEEEEE
Confidence 743 12568888877654210 1224688888888899987653 578999999
Q ss_pred eCCCC-CCchhHHHHHHh
Q 006687 144 ADSQY-GEYAPVAAWLRD 160 (635)
Q Consensus 144 ~D~~~-~~~~G~~AWL~a 160 (635)
+-+++ +...|.+.++++
T Consensus 141 ~~~EE~~~g~~~~~~~~~ 158 (399)
T PRK13004 141 TVQEEDCDGLCWRYIIEE 158 (399)
T ss_pred EcccccCcchhHHHHHHh
Confidence 64333 333566777764
No 33
>PRK07907 hypothetical protein; Provisional
Probab=95.00 E-value=0.41 Score=53.36 Aligned_cols=101 Identities=13% Similarity=0.130 Sum_probs=68.3
Q ss_pred cchHHHHHHHHHhcCC-eeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcCCCCCCceeEEEEEEec
Q 006687 29 TESHGIIAKYMSNLGA-QVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYN 107 (635)
Q Consensus 29 ~~~~~~i~~~l~~lGl-e~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrApRgdgtEAiVL~ap~~ 107 (635)
.+..+||.++|+++|+ ++..++ . ....|+++.++. +.+...+++..++|
T Consensus 44 ~~~~~~l~~~l~~~g~~~~~~~~--~--------------------------~~~~nl~a~~~~--~~~~~~lll~gH~D 93 (449)
T PRK07907 44 ARSAEWVADLLREAGFDDVRVVS--A--------------------------DGAPAVIGTRPA--PPGAPTVLLYAHHD 93 (449)
T ss_pred HHHHHHHHHHHHHcCCceEEEEe--c--------------------------CCCCEEEEEecC--CCCCCEEEEEcccC
Confidence 4578999999999997 665443 1 023589988854 23456788877665
Q ss_pred cCC------------------------CCCcchhhHHHHHHHHHHHhcCCccccceEEEeeCCCCCCchhHHHHHHhh
Q 006687 108 AVK------------------------GGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDY 161 (635)
Q Consensus 108 ~~~------------------------~~~~~~~~valaLaLa~y~~r~~~wAKDIIfl~~D~~~~~~~G~~AWL~aY 161 (635)
... +..+...+++.++..++.+ +.. ...+|.|+++..++.+..|++++++++
T Consensus 94 vVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l-~~~-~~~~i~~~~~~dEE~g~~g~~~~l~~~ 169 (449)
T PRK07907 94 VQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL-GGD-LPVGVTVFVEGEEEMGSPSLERLLAEH 169 (449)
T ss_pred CCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh-ccC-CCCcEEEEEEcCcccCCccHHHHHHhc
Confidence 431 1123356788888777877 333 367899999654544457999999986
No 34
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=94.94 E-value=0.15 Score=56.14 Aligned_cols=100 Identities=7% Similarity=-0.003 Sum_probs=70.0
Q ss_pred ccchHHHHHHHHHhcCCe-eeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcCCCCCCceeEEEEEEe
Q 006687 28 TTESHGIIAKYMSNLGAQ-VNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPY 106 (635)
Q Consensus 28 ~~~~~~~i~~~l~~lGle-~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrApRgdgtEAiVL~ap~ 106 (635)
..+++++|.++|+++|++ ++... +--||||.+++..+++...++++++.
T Consensus 32 ~~~~a~~l~~~l~~lG~~~v~~d~------------------------------~~gnv~~~~~~~~~~~~~~i~~~aHm 81 (410)
T TIGR01882 32 QLTFGNMLVDDLKSLGLQDAHYDE------------------------------KNGYVIATIPSNTDKDVPTIGFLAHV 81 (410)
T ss_pred HHHHHHHHHHHHHHcCCceEEEcC------------------------------CceEEEEEecCCCCCCCCEEEEEEec
Confidence 346899999999999997 66321 13589999877554335889999988
Q ss_pred ccCCC----------------------------------------------C-------CcchhhHHHHHHHHHHHhcC-
Q 006687 107 NAVKG----------------------------------------------G-------VRETLSLGIAYSVFSLLTRV- 132 (635)
Q Consensus 107 ~~~~~----------------------------------------------~-------~~~~~~valaLaLa~y~~r~- 132 (635)
|+... . .+...|+|.++..++++++.
T Consensus 82 DTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~g~~l~G~D~KgglAa~l~A~~~L~e~~ 161 (410)
T TIGR01882 82 DTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLITTDGTTLLGADDKAGIAEIMTAADYLINHP 161 (410)
T ss_pred ccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEEcCCCEeecccCHHHHHHHHHHHHHHHhCC
Confidence 77431 0 12245899999999999864
Q ss_pred CccccceEEEeeCCCCCCchhHHHHH
Q 006687 133 TWLAKDIIWLVADSQYGEYAPVAAWL 158 (635)
Q Consensus 133 ~~wAKDIIfl~~D~~~~~~~G~~AWL 158 (635)
.-...+|.|+|+-+++.+ .|++..+
T Consensus 162 ~~~~g~I~~~ft~dEE~g-~Ga~~l~ 186 (410)
T TIGR01882 162 EIKHGTIRVAFTPDEEIG-RGAHKFD 186 (410)
T ss_pred CCCCCCEEEEEECcccCC-cCcchhh
Confidence 334679999997444433 4776654
No 35
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=94.85 E-value=0.32 Score=53.78 Aligned_cols=98 Identities=14% Similarity=0.129 Sum_probs=74.4
Q ss_pred cchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcCCCCCCceeEEEEEEecc
Q 006687 29 TESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNA 108 (635)
Q Consensus 29 ~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrApRgdgtEAiVL~ap~~~ 108 (635)
.+.++|+.++|+++|+++.... .| |+||.+.... .+..+|++-.+.|+
T Consensus 33 ~~a~~~~~~~~~~~Gl~v~~D~------------------------------~g-N~~~~~~g~~-~~~~~i~~gsHlDt 80 (406)
T TIGR03176 33 LAAQQQFKKRMAESGLETRFDD------------------------------VG-NLYGRLVGTE-FPEETILTGSHIDT 80 (406)
T ss_pred HHHHHHHHHHHHHcCCEEEEcC------------------------------CC-cEEEEecCCC-CCCCeEEEeccccC
Confidence 3589999999999999976332 23 9999998744 35679999999988
Q ss_pred CC--CCCcchhhHHHHHHHHHHHhcC-CccccceEEEeeCCCCCC-----chhHHHHH
Q 006687 109 VK--GGVRETLSLGIAYSVFSLLTRV-TWLAKDIIWLVADSQYGE-----YAPVAAWL 158 (635)
Q Consensus 109 ~~--~~~~~~~~valaLaLa~y~~r~-~~wAKDIIfl~~D~~~~~-----~~G~~AWL 158 (635)
.. +..++..||..+|..++.++.. .---++|-+++.=.+++. ..|.++|.
T Consensus 81 v~~gG~~dg~~Gv~~~le~~~~l~~~~~~~~~~i~vi~~~~EEg~rf~~~~~Gs~~~~ 138 (406)
T TIGR03176 81 VVNGGNLDGQFGALAAWLAVDYLKEKYGAPLRTVEVLSMAEEEGSRFPYVFWGSKNIF 138 (406)
T ss_pred CCCCCccCchhhHHHHHHHHHHHHHcCCCCCCCeEEEEeccccCccCCcccccHHHHh
Confidence 64 2345678999999999999976 455788888875334444 67888886
No 36
>PRK07338 hypothetical protein; Provisional
Probab=94.64 E-value=0.5 Score=51.61 Aligned_cols=136 Identities=10% Similarity=0.072 Sum_probs=79.5
Q ss_pred HHHHHHHHhhhc-CCCCCc----cchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceE
Q 006687 11 NKLIKELNNLHS-NPLGAT----TESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINT 85 (635)
Q Consensus 11 ~~~~~ei~~l~~-~~~~~~----~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~Nv 85 (635)
.++.+++..|.. ++.+.+ .+..+||.++|+++|+++..+..... | .... +.... ....|.|+
T Consensus 17 ~~~~~~l~~lv~i~S~s~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~~~-----~--~~~~----~~~~~--~~~~~~nl 83 (402)
T PRK07338 17 APMLEQLIAWAAINSGSRNLDGLARMAELLADAFAALPGEIELIPLPPV-----E--VIDA----DGRTL--EQAHGPAL 83 (402)
T ss_pred HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhCCCcEEEecCCcc-----c--cccc----ccccc--ccCcCCeE
Confidence 345555555433 333212 25788999999999999865442110 0 0000 00000 01246799
Q ss_pred EEEEcCCCCCCceeEEEEEEeccCCC-------------C-------CcchhhHHHHHHHHHHHhcCCc-cccceEEEee
Q 006687 86 VGIIRAPRGDGKEAIVLVTPYNAVKG-------------G-------VRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVA 144 (635)
Q Consensus 86 ygIlrApRgdgtEAiVL~ap~~~~~~-------------~-------~~~~~~valaLaLa~y~~r~~~-wAKDIIfl~~ 144 (635)
++.++. ++...++|..++|..-. + .+...+++.+++.++.+++... ..++|.|+|+
T Consensus 84 ~a~~~~---~~~~~lll~gH~DvVp~~~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~~~~~~~i~~~~~ 160 (402)
T PRK07338 84 HVSVRP---EAPRQVLLTGHMDTVFPADHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFERSPLADKLGYDVLIN 160 (402)
T ss_pred EEEECC---CCCccEEEEeecCccCCCCCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEEE
Confidence 999843 22235999988865311 0 1224578888888888876442 3579999997
Q ss_pred CCCCCCchhHHHHHHhhc
Q 006687 145 DSQYGEYAPVAAWLRDYH 162 (635)
Q Consensus 145 D~~~~~~~G~~AWL~aYh 162 (635)
-+++.+..|.+.++++..
T Consensus 161 ~dEE~g~~g~~~~~~~~~ 178 (402)
T PRK07338 161 PDEEIGSPASAPLLAELA 178 (402)
T ss_pred CCcccCChhhHHHHHHHh
Confidence 444434568888888754
No 37
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=94.54 E-value=0.49 Score=50.77 Aligned_cols=116 Identities=19% Similarity=0.216 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhhhcCCCCCccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEE
Q 006687 9 EANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGI 88 (635)
Q Consensus 9 ~a~~~~~ei~~l~~~~~~~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygI 88 (635)
++-++++++-+..+.+++ ..+..+||.++|+++|+++..++ ..|++|.
T Consensus 7 ~~~~~l~~Lv~i~s~s~~-e~~~~~~l~~~l~~~G~~~~~~~-------------------------------~~n~i~~ 54 (348)
T PRK04443 7 EARELLKGLVEIPSPSGE-EAAAAEFLVEFMESHGREAWVDE-------------------------------AGNARGP 54 (348)
T ss_pred HHHHHHHHHHcCCCCCCC-hHHHHHHHHHHHHHcCCEEEEcC-------------------------------CCcEEEE
Confidence 344556666655554433 45789999999999999975321 1267766
Q ss_pred EcCCCCCCceeEEEEEEeccCCC---------------CCcchhhHHHHHHHHHHHhcCCccccceEEEeeCCCCCCchh
Q 006687 89 IRAPRGDGKEAIVLVTPYNAVKG---------------GVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAP 153 (635)
Q Consensus 89 lrApRgdgtEAiVL~ap~~~~~~---------------~~~~~~~valaLaLa~y~~r~~~wAKDIIfl~~D~~~~~~~G 153 (635)
+ +++...+++..++|..-. ..+...+++.++..++.+ +.. +..||+|+++-+++....|
T Consensus 55 ~----~~~~~~l~~~~H~DtVp~~~p~~~~~g~iyGrG~~D~Kg~~aa~l~A~~~l-~~~-~~~~i~~~~~~dEE~g~~~ 128 (348)
T PRK04443 55 A----GDGPPLVLLLGHIDTVPGDIPVRVEDGVLWGRGSVDAKGPLAAFAAAAARL-EAL-VRARVSFVGAVEEEAPSSG 128 (348)
T ss_pred c----CCCCCEEEEEeeccccCCCCCcEeeCCeEEeecccccccHHHHHHHHHHHh-ccc-CCCCEEEEEEcccccCChh
Confidence 4 223368999998876521 123346788888777877 433 5789999996444444466
Q ss_pred HHHHHHhhc
Q 006687 154 VAAWLRDYH 162 (635)
Q Consensus 154 ~~AWL~aYh 162 (635)
...++.+-+
T Consensus 129 ~~~~l~~~~ 137 (348)
T PRK04443 129 GARLVADRE 137 (348)
T ss_pred HHHHHHhcc
Confidence 677776543
No 38
>PRK09104 hypothetical protein; Validated
Probab=94.51 E-value=0.54 Score=52.64 Aligned_cols=105 Identities=10% Similarity=0.086 Sum_probs=71.3
Q ss_pred cchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcCCCCCCceeEEEEEEecc
Q 006687 29 TESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNA 108 (635)
Q Consensus 29 ~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrApRgdgtEAiVL~ap~~~ 108 (635)
.+..+||.++|+++|+++..++. ..+.||++.++..+ .+...++|..++|.
T Consensus 43 ~~~~~~l~~~l~~~G~~v~~~~~----------------------------~~~~~l~a~~~g~~-~~~~~lll~gH~Dv 93 (464)
T PRK09104 43 RKAADWLVADLASLGFEASVRDT----------------------------PGHPMVVAHHEGPT-GDAPHVLFYGHYDV 93 (464)
T ss_pred HHHHHHHHHHHHHCCCeEEEEec----------------------------CCCCEEEEEecCCC-CCCCEEEEEecccC
Confidence 35689999999999999775531 02358998886432 23467888887654
Q ss_pred CC-----------------------------CCCcchhhHHHHHHHHHHHhcC-CccccceEEEeeCCCCCCchhHHHHH
Q 006687 109 VK-----------------------------GGVRETLSLGIAYSVFSLLTRV-TWLAKDIIWLVADSQYGEYAPVAAWL 158 (635)
Q Consensus 109 ~~-----------------------------~~~~~~~~valaLaLa~y~~r~-~~wAKDIIfl~~D~~~~~~~G~~AWL 158 (635)
.. +..+...+++.++..++-+++. ..+.++|+|+++-+++.+..|+++++
T Consensus 94 Vp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~l 173 (464)
T PRK09104 94 QPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAWKAVTGSLPVRVTILFEGEEESGSPSLVPFL 173 (464)
T ss_pred CCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccCCccHHHHH
Confidence 21 0012345788888888878764 45678999999633333456999999
Q ss_pred Hhhc
Q 006687 159 RDYH 162 (635)
Q Consensus 159 ~aYh 162 (635)
.+..
T Consensus 174 ~~~~ 177 (464)
T PRK09104 174 EANA 177 (464)
T ss_pred HhhH
Confidence 8764
No 39
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=94.23 E-value=0.38 Score=51.25 Aligned_cols=110 Identities=17% Similarity=0.104 Sum_probs=72.5
Q ss_pred HHHHHHhhhcCCCCCccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcCC
Q 006687 13 LIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAP 92 (635)
Q Consensus 13 ~~~ei~~l~~~~~~~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrAp 92 (635)
+++|+-+..+.+++ ..+..+||.++|+++|+++... . . .|+++..
T Consensus 2 ~l~~lv~i~s~s~~-e~~~~~~l~~~l~~~g~~~~~~----~--------------------------~-~~~~~~~--- 46 (336)
T TIGR01902 2 LLKDLLEIYSPSGK-EANAAKFLEEISKDLGLKLIID----D--------------------------A-GNFILGK--- 46 (336)
T ss_pred hHHHHhcCCCCCcc-hHHHHHHHHHHHHHcCCEEEEC----C--------------------------C-CcEEEEe---
Confidence 45566655554433 5578999999999999997311 0 1 2565543
Q ss_pred CCCCceeEEEEEEeccCC---------------CCCcchhhHHHHHHHHHHHhcCCccccceEEEeeCCCCCCchhHHHH
Q 006687 93 RGDGKEAIVLVTPYNAVK---------------GGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAW 157 (635)
Q Consensus 93 RgdgtEAiVL~ap~~~~~---------------~~~~~~~~valaLaLa~y~~r~~~wAKDIIfl~~D~~~~~~~G~~AW 157 (635)
+.+.-.+++..++|... +..+...+++.++..++.+++.. .||+|+++-+++....|++..
T Consensus 47 -~~~~~~i~~~~H~D~vp~~~~~~~~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~~---~~i~~~~~~dEE~g~~G~~~~ 122 (336)
T TIGR01902 47 -GDGHKKILLAGHVDTVPGYIPVKIEGGLLYGRGAVDAKGPLIAMIFATWLLNEKG---IKVIVSGLVDEESSSKGAREV 122 (336)
T ss_pred -CCCCceEEEEccccccCCCcccEEeCCEEEEecccCCCcHHHHHHHHHHHHHhCC---CcEEEEEEeCcccCCccHHHH
Confidence 22335688888887641 11234568888887778888765 499999964444456799999
Q ss_pred HHhh
Q 006687 158 LRDY 161 (635)
Q Consensus 158 L~aY 161 (635)
++.+
T Consensus 123 ~~~~ 126 (336)
T TIGR01902 123 IDKN 126 (336)
T ss_pred Hhhc
Confidence 8874
No 40
>PRK05469 peptidase T; Provisional
Probab=94.08 E-value=0.56 Score=51.51 Aligned_cols=101 Identities=9% Similarity=0.028 Sum_probs=67.7
Q ss_pred ccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcCCCCCCceeEEEEEEec
Q 006687 28 TTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYN 107 (635)
Q Consensus 28 ~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrApRgdgtEAiVL~ap~~ 107 (635)
..++.+||.++|+++|+++.... ..-||+|.+++....+...++|...+|
T Consensus 31 ~~~~a~~l~~~l~~~G~~~~~~~------------------------------~~~~v~~~~~g~~~~~~~~i~l~~H~D 80 (408)
T PRK05469 31 QWDLAKLLVEELKELGLQDVTLD------------------------------ENGYVMATLPANVDKDVPTIGFIAHMD 80 (408)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEC------------------------------CCeEEEEEecCCCCCCCCeEEEEEecc
Confidence 34578999999999999732111 123789998653222457789988887
Q ss_pred cCC-------------------------------------------------CC----CcchhhHHHHHHHHHHHhcCC-
Q 006687 108 AVK-------------------------------------------------GG----VRETLSLGIAYSVFSLLTRVT- 133 (635)
Q Consensus 108 ~~~-------------------------------------------------~~----~~~~~~valaLaLa~y~~r~~- 133 (635)
..- +. .+...+++.++..++++++..
T Consensus 81 ~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~rG~~~lg~D~Kgglaa~l~a~~~l~~~~~ 160 (408)
T PRK05469 81 TAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITTDGTTLLGADDKAGIAEIMTALEYLIAHPE 160 (408)
T ss_pred CCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEEcCCCEeecccchHHHHHHHHHHHHHHhCCC
Confidence 651 10 334567888888888887653
Q ss_pred ccccceEEEeeCCCCCCchhHHHHHH
Q 006687 134 WLAKDIIWLVADSQYGEYAPVAAWLR 159 (635)
Q Consensus 134 ~wAKDIIfl~~D~~~~~~~G~~AWL~ 159 (635)
-...+|+|+|+-+++.. .|+++.+.
T Consensus 161 ~~~g~v~~~f~~dEE~g-~Ga~~~~~ 185 (408)
T PRK05469 161 IKHGDIRVAFTPDEEIG-RGADKFDV 185 (408)
T ss_pred CCCCCEEEEEecccccC-CCHHHhhh
Confidence 34569999996444333 68888863
No 41
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=94.04 E-value=0.54 Score=51.03 Aligned_cols=128 Identities=10% Similarity=0.061 Sum_probs=77.5
Q ss_pred HHHHHHHHHhhhcCCC--CCccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEE
Q 006687 10 ANKLIKELNNLHSNPL--GATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVG 87 (635)
Q Consensus 10 a~~~~~ei~~l~~~~~--~~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~Nvyg 87 (635)
+-++++++-.+.+-+. ....+..+||.++|+++|+++..+..... . .+.. .....|+++
T Consensus 8 ~~~~l~~lv~i~S~s~~~~~~~~~a~~l~~~l~~~G~~~~~~~~~~~---------------~---~~~~-~~~~~~~~~ 68 (394)
T PRK08651 8 IVEFLKDLIKIPTVNPPGENYEEIAEFLRDTLEELGFSTEIIEVPNE---------------Y---VKKH-DGPRPNLIA 68 (394)
T ss_pred HHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHHHcCCeEEEEecCcc---------------c---cccc-cCCcceEEE
Confidence 3344555555544331 22346899999999999999776542110 0 0000 011456666
Q ss_pred EEcCCCCCCceeEEEEEEeccCCC-----------------------CCcchhhHHHHHHHHHHHhcCCccccceEEEee
Q 006687 88 IIRAPRGDGKEAIVLVTPYNAVKG-----------------------GVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVA 144 (635)
Q Consensus 88 IlrApRgdgtEAiVL~ap~~~~~~-----------------------~~~~~~~valaLaLa~y~~r~~~wAKDIIfl~~ 144 (635)
.. +.+.-.+++.+..|.... ..+...+++.+|+.++++++.. .+||.|+|+
T Consensus 69 ~~----~~~~~~ill~~HlDtvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~--~~~v~~~~~ 142 (394)
T PRK08651 69 RR----GSGNPHLHFNGHYDVVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPAG--DGNIELAIV 142 (394)
T ss_pred Ee----CCCCceEEEEeeeeeecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhcC--CCCEEEEEe
Confidence 42 222357888877754311 0122467888999999998766 789999996
Q ss_pred CCCCCCchhHHHHHHhhc
Q 006687 145 DSQYGEYAPVAAWLRDYH 162 (635)
Q Consensus 145 D~~~~~~~G~~AWL~aYh 162 (635)
-+++.+..|++..+++..
T Consensus 143 ~~EE~g~~G~~~~~~~~~ 160 (394)
T PRK08651 143 PDEETGGTGTGYLVEEGK 160 (394)
T ss_pred cCccccchhHHHHHhccC
Confidence 444433479999998653
No 42
>PLN02693 IAA-amino acid hydrolase
Probab=93.98 E-value=0.86 Score=51.03 Aligned_cols=117 Identities=9% Similarity=0.100 Sum_probs=76.9
Q ss_pred HHHHHHHHHhhhcCCCCCccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEE
Q 006687 10 ANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGII 89 (635)
Q Consensus 10 a~~~~~ei~~l~~~~~~~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIl 89 (635)
..++.++|+..-.-+. ...+..++|.++|+++|+++.. . ..+.||+|.+
T Consensus 49 ~~~~r~~lh~~PE~s~-~E~~ta~~i~~~L~~~G~~~~~-~-----------------------------~~~~~via~~ 97 (437)
T PLN02693 49 MVRIRRKIHENPELGY-EEFETSKLIRSELDLIGIKYRY-P-----------------------------VAITGIIGYI 97 (437)
T ss_pred HHHHHHHHHhCCCCCC-chHHHHHHHHHHHHHCCCeeEe-c-----------------------------CCCcEEEEEE
Confidence 3455555555433222 2456899999999999998541 1 1367999998
Q ss_pred cCCCCCCceeEEEEEEeccCCCC-----------------CcchhhHHHHHHHHHHHhcCC-ccccceEEEeeCCCCCCc
Q 006687 90 RAPRGDGKEAIVLVTPYNAVKGG-----------------VRETLSLGIAYSVFSLLTRVT-WLAKDIIWLVADSQYGEY 151 (635)
Q Consensus 90 rApRgdgtEAiVL~ap~~~~~~~-----------------~~~~~~valaLaLa~y~~r~~-~wAKDIIfl~~D~~~~~~ 151 (635)
... +| -.+++.+..|..-.+ -.-..+++.+++.++++++.. -+..+|.|+|+-++++ .
T Consensus 98 g~~--~g-~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~hacGhkg~~A~~l~Aa~~L~~~~~~~~g~V~~if~pdEE~-~ 173 (437)
T PLN02693 98 GTG--EP-PFVALRADMDALPIQEAVEWEHKSKIPGKMHACGHDGHVAMLLGAAKILQEHRHHLQGTVVLIFQPAEEG-L 173 (437)
T ss_pred CCC--CC-CEEEEEeecCCCcCCCCCCCCCCCCCCCCEECCcchHHHHHHHHHHHHHHhCcccCCceEEEEEEEcccc-h
Confidence 432 22 479999888663210 011246788888899998653 4678999999755543 3
Q ss_pred hhHHHHHHhh
Q 006687 152 APVAAWLRDY 161 (635)
Q Consensus 152 ~G~~AWL~aY 161 (635)
.|.+..+++.
T Consensus 174 ~Ga~~~i~~g 183 (437)
T PLN02693 174 SGAKKMREEG 183 (437)
T ss_pred hhHHHHHHCC
Confidence 6899998864
No 43
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=93.96 E-value=0.97 Score=46.71 Aligned_cols=123 Identities=11% Similarity=0.138 Sum_probs=76.8
Q ss_pred EEEEEEeccC-------CCCCcchhhHHHHHHHHHHHhcC----CccccceEEEeeCCCCCCchhHHHHHHhhcCCCCCC
Q 006687 100 IVLVTPYNAV-------KGGVRETLSLGIAYSVFSLLTRV----TWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSN 168 (635)
Q Consensus 100 iVL~ap~~~~-------~~~~~~~~~valaLaLa~y~~r~----~~wAKDIIfl~~D~~~~~~~G~~AWL~aYh~~~~~~ 168 (635)
|++++..|+. -|......|+..+|+.|+.|++. +=+.|+|+|.+.++|.=++.|-+.|+.+-....+..
T Consensus 3 Ilv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~~~~~~~~~knV~F~~F~GEs~dYiGS~R~vyDm~~~~f~~ 82 (234)
T PF05450_consen 3 ILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKLLPDSSNLNKNVLFAFFNGESFDYIGSSRFVYDMQNGNFPS 82 (234)
T ss_pred EEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHhhhccccccCcEEEEEecCccccccchHHHHHHHHcCcCcc
Confidence 5667777653 12233467888899999999866 346999999999987656899999999998754320
Q ss_pred CCccccccccCCCCCcccccccccccchheeeeeEEeecCCCCCcc-eEEEEeecCCCCCCchhHHHHHHHHHh
Q 006687 169 LDSLNTETCHVGNNNFESKISYGIRRSGTMAAALVLGVAYGNENED-TLGIYAEASNGQMPNLDLINIVHYLAV 241 (635)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~raG~IqaAl~le~~~~~~~~~-~l~I~~eG~NGqLPNLDLiN~v~~ia~ 241 (635)
. .. + ....+-..|...| |++..+...+ .+.+.+.+.+++--+..+.+.+.++..
T Consensus 83 ~-~~----~------------~~~i~~~~I~~~I--Elgqvg~~~~~~l~~Hvd~~~~~~~~~~~~~~l~~~~~ 137 (234)
T PF05450_consen 83 D-SL----Q------------FQPISLDNIDSVI--ELGQVGLSNSSGLYAHVDSPSNSSVANQVDEALDAAAK 137 (234)
T ss_pred c-cc----c------------cccccHHHCCEEE--EeeccCCCCCCCEEEEecCCccchhhHHHHHHHHHHHH
Confidence 0 00 0 0012444566654 6666554222 466666665555555455555555543
No 44
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=93.95 E-value=0.46 Score=55.24 Aligned_cols=96 Identities=17% Similarity=0.193 Sum_probs=70.9
Q ss_pred chHHHHHHHHHhcCC-eeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcCCCCCCceeEEEEEEecc
Q 006687 30 ESHGIIAKYMSNLGA-QVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNA 108 (635)
Q Consensus 30 ~~~~~i~~~l~~lGl-e~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrApRgdgtEAiVL~ap~~~ 108 (635)
++++|+.++|+++|+ ++.... --|++|.+.+++ .+..++++..+.|+
T Consensus 215 ~~~~~l~~~~~~~Gl~~v~~D~-------------------------------~GNl~~~~~g~~-~~~~~v~~gsHlDT 262 (591)
T PRK13590 215 ACAQQISHWMRDCGFDEVHIDA-------------------------------VGNVVGRYKGST-PQAKRLLTGSHYDT 262 (591)
T ss_pred HHHHHHHHHHHHcCCCeeeECC-------------------------------CCCEEEEecCCC-CCCCeEEEeccccc
Confidence 689999999999999 654221 258999987754 34567999999988
Q ss_pred CC--CCCcchhhHHHHHHHHHHHhcCCc-cccceEEEeeCCCCC-----CchhHHHH
Q 006687 109 VK--GGVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVADSQYG-----EYAPVAAW 157 (635)
Q Consensus 109 ~~--~~~~~~~~valaLaLa~y~~r~~~-wAKDIIfl~~D~~~~-----~~~G~~AW 157 (635)
.- +..+...||+.+|..++.+++... ..++|.++++=++++ ...|.++|
T Consensus 263 V~~gG~~DG~~Gv~a~lea~~~l~~~~~~~~~~i~vv~~~~EEg~rF~~~~~GS~~~ 319 (591)
T PRK13590 263 VRNGGKYDGRLGIFVPMACVRELHRQGRRLPFGLEVVGFAEEEGQRYKATFLGSGAL 319 (591)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCccccCCccccchHHH
Confidence 63 334567899999999999987654 357999998534443 25677764
No 45
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=93.94 E-value=0.88 Score=49.86 Aligned_cols=109 Identities=20% Similarity=0.224 Sum_probs=77.2
Q ss_pred ccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcCCCCCCceeEEEEEEec
Q 006687 28 TTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYN 107 (635)
Q Consensus 28 ~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrApRgdgtEAiVL~ap~~ 107 (635)
..+..+|+.++|+++|+++....+... . ...|+||....+.++ +.++|..++|
T Consensus 33 ~~~~~~~l~~~l~~~g~~~~~~~~~~~------------------------~-~~~n~~~~~~~~~~~--~~l~l~~H~D 85 (409)
T COG0624 33 EAEAAELLAEWLEELGFEVEEDEVGPG------------------------P-GRPNLVARLGGGDGG--PTLLLGGHLD 85 (409)
T ss_pred chHHHHHHHHHHHHcCCceEEeecCCC------------------------C-CceEEEEEecCCCCC--CeEEEecccc
Confidence 557899999999999999876653221 0 245999998886655 9999998886
Q ss_pred cCCCC------------------------CcchhhHHHHHHHHHHHhc-CCccccceEEEeeCCCCCCchhHHHHHHhhc
Q 006687 108 AVKGG------------------------VRETLSLGIAYSVFSLLTR-VTWLAKDIIWLVADSQYGEYAPVAAWLRDYH 162 (635)
Q Consensus 108 ~~~~~------------------------~~~~~~valaLaLa~y~~r-~~~wAKDIIfl~~D~~~~~~~G~~AWL~aYh 162 (635)
..-.+ .++..+++..+..++-+.. ...+.+++.++++-+++....|+.+|+++..
T Consensus 86 vVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~~~~~~~~v~~~~~~dEE~g~~~~~~~~~~~~ 165 (409)
T COG0624 86 VVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAAGGELPGDVRLLFTADEESGGAGGKAYLEEGE 165 (409)
T ss_pred ccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHhCCCCCeEEEEEEEeccccCCcchHHHHHhcc
Confidence 53111 1234566666666666655 5677899999996444334589999999987
Q ss_pred C
Q 006687 163 T 163 (635)
Q Consensus 163 ~ 163 (635)
.
T Consensus 166 ~ 166 (409)
T COG0624 166 E 166 (409)
T ss_pred h
Confidence 5
No 46
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=93.77 E-value=0.61 Score=54.26 Aligned_cols=117 Identities=15% Similarity=0.177 Sum_probs=82.0
Q ss_pred HHHHHHHHHhhhcCCC--C-------------CccchHHHHHHHHHhcCCe-eeeeccccCCccCCCccccCCCCCcccc
Q 006687 10 ANKLIKELNNLHSNPL--G-------------ATTESHGIIAKYMSNLGAQ-VNNHKFHPQLNQFHPLHFFSGPDSGVMQ 73 (635)
Q Consensus 10 a~~~~~ei~~l~~~~~--~-------------~~~~~~~~i~~~l~~lGle-~~~~~f~~~~~~f~~l~f~~~~~~~~~~ 73 (635)
+.++.++++.+..=.. . ...++++|+.++|+++|++ +....
T Consensus 180 ~~r~~~~l~~l~~~~~~~~~~~~g~~R~~~s~~~~~~~~~~~~~~~~~Gl~~v~~D~----------------------- 236 (591)
T PRK13799 180 GADVMDWAEDIAAHSDPGYADEGALTCTYLSDAHRACANQISDWMRDAGFDEVEIDA----------------------- 236 (591)
T ss_pred HHHHHHHHHHHHhccCCCCCCCCceEeeeCCHHHHHHHHHHHHHHHHcCCCeEeECC-----------------------
Confidence 4566777777654210 0 0226899999999999998 77432
Q ss_pred cCCccccccceEEEEEcCCCCCCceeEEEEEEeccCC--CCCcchhhHHHHHHHHHHHhcCCc-cccceEEEeeCCCCC-
Q 006687 74 ENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAVK--GGVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVADSQYG- 149 (635)
Q Consensus 74 ~~~~~~~~G~NvygIlrApRgdgtEAiVL~ap~~~~~--~~~~~~~~valaLaLa~y~~r~~~-wAKDIIfl~~D~~~~- 149 (635)
--||||.+..+. .+..++++-.+.|+.- +..+...||..+|..++.++.... ..+||.++..=.+++
T Consensus 237 --------~gNv~~~~~g~~-~~~p~v~~gSHlDTV~~gG~~DG~~Gv~a~l~~~~~l~~~~~~~~~~i~vi~~~~EEg~ 307 (591)
T PRK13799 237 --------VGNVVGRYKAAD-DDAKTLITGSHYDTVRNGGKYDGREGIFLAIACVKELHEQGERLPFHFEVIAFAEEEGQ 307 (591)
T ss_pred --------CCCEEEEcCCCC-CCCCeEEEeccccccCCCCccccHHHHHHHHHHHHHHHHcCCCCCCCeEEEEecCCCcc
Confidence 158999976543 2346788888998853 345567899999999999986544 578999997423333
Q ss_pred ----CchhHHHHH
Q 006687 150 ----EYAPVAAWL 158 (635)
Q Consensus 150 ----~~~G~~AWL 158 (635)
...|.++|.
T Consensus 308 rF~~~~~GS~~~~ 320 (591)
T PRK13799 308 RFKATFLGSGALI 320 (591)
T ss_pred CCCccccchHHHh
Confidence 467888886
No 47
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=93.63 E-value=0.68 Score=49.59 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhhhcCCCCCccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEE
Q 006687 9 EANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGI 88 (635)
Q Consensus 9 ~a~~~~~ei~~l~~~~~~~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygI 88 (635)
++.++++++-...+-++ .+.+..+||.++|+++|+++..... .|++.
T Consensus 11 ~~~~~l~~lv~i~s~s~-~e~~~~~~l~~~l~~~g~~~~~~~~-------------------------------~~~~~- 57 (346)
T PRK00466 11 KAKELLLDLLSIYTPSG-NETNATKFFEKISNELNLKLEILPD-------------------------------SNSFI- 57 (346)
T ss_pred HHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHHcCCeEEEecC-------------------------------CCcEe-
Confidence 44445555544444332 3557899999999999998764320 12221
Q ss_pred EcCCCCCCceeEEEEEEeccC---------------CCCCcchhhHHHHHHHHHHHhcCCccccceEEEeeCCCCCCchh
Q 006687 89 IRAPRGDGKEAIVLVTPYNAV---------------KGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAP 153 (635)
Q Consensus 89 lrApRgdgtEAiVL~ap~~~~---------------~~~~~~~~~valaLaLa~y~~r~~~wAKDIIfl~~D~~~~~~~G 153 (635)
+. ...+++..++|.. .+..+...+++.+++.++.+++.. ..++|+++-+++....|
T Consensus 58 -~g-----~~~lll~gH~DtVp~~~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~~---~~i~~~~~~dEE~g~~G 128 (346)
T PRK00466 58 -LG-----EGDILLASHVDTVPGYIEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNEKG---IKVMVSGLADEESTSIG 128 (346)
T ss_pred -cC-----CCeEEEEeccccCCCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcC---CCEEEEEEcCcccCCcc
Confidence 11 1247777777664 222344678888888888887765 35888886444444579
Q ss_pred HHHHHHhh
Q 006687 154 VAAWLRDY 161 (635)
Q Consensus 154 ~~AWL~aY 161 (635)
++++++..
T Consensus 129 ~~~l~~~~ 136 (346)
T PRK00466 129 AKELVSKG 136 (346)
T ss_pred HHHHHhcC
Confidence 99998864
No 48
>PRK08201 hypothetical protein; Provisional
Probab=93.58 E-value=0.93 Score=50.57 Aligned_cols=103 Identities=9% Similarity=0.076 Sum_probs=67.0
Q ss_pred chHHHHHHHHHhcCCe-eeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcCCCCCCceeEEEEEEecc
Q 006687 30 ESHGIIAKYMSNLGAQ-VNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNA 108 (635)
Q Consensus 30 ~~~~~i~~~l~~lGle-~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrApRgdgtEAiVL~ap~~~ 108 (635)
+..+||.++|+++|++ +..+.. ....|+++.+... .+...+++..++|.
T Consensus 41 ~~a~~l~~~l~~~G~~~~~~~~~----------------------------~~~~~l~a~~~~~--~~~~~lll~gH~Dv 90 (456)
T PRK08201 41 KAAEWLAGALEKAGLEHVEIMET----------------------------AGHPIVYADWLHA--PGKPTVLIYGHYDV 90 (456)
T ss_pred HHHHHHHHHHHHcCCCeEEEEec----------------------------CCCCEEEEEecCC--CCCCEEEEEeccCC
Confidence 5789999999999997 443320 0134888877531 22345888887765
Q ss_pred CC------------------------CCCcchhhHHHHHHHHHHHhc-CCccccceEEEeeCCCCCCchhHHHHHHhhc
Q 006687 109 VK------------------------GGVRETLSLGIAYSVFSLLTR-VTWLAKDIIWLVADSQYGEYAPVAAWLRDYH 162 (635)
Q Consensus 109 ~~------------------------~~~~~~~~valaLaLa~y~~r-~~~wAKDIIfl~~D~~~~~~~G~~AWL~aYh 162 (635)
.. +..+...+++..++.++.+++ ..-...+|+|+++-+++.+..|+..+++++.
T Consensus 91 Vp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~ 169 (456)
T PRK08201 91 QPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKVEGTLPVNVKFCIEGEEEIGSPNLDSFVEEEK 169 (456)
T ss_pred cCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccCCccHHHHHHhhH
Confidence 21 002335678877777777764 3345679999996444444568999998753
No 49
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=93.53 E-value=2.8 Score=47.74 Aligned_cols=181 Identities=13% Similarity=0.121 Sum_probs=94.4
Q ss_pred HHHHHHHHhh---hcCCCCCccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEE
Q 006687 11 NKLIKELNNL---HSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVG 87 (635)
Q Consensus 11 ~~~~~ei~~l---~~~~~~~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~Nvyg 87 (635)
.++.+.++.| .+-+++ ..+..+||.++++++|+++.... . -|+++
T Consensus 10 ~~~~~~l~~Lv~ips~S~~-e~~~~~~l~~~~~~~G~~~~~d~------------------------------~-gnvi~ 57 (485)
T PRK15026 10 QPLWDIFAKICSIPHPSYH-EEQLAEYIVGWAKEKGFHVERDQ------------------------------V-GNILI 57 (485)
T ss_pred HHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHhCCCEEEEEe------------------------------c-CeEEE
Confidence 3444555544 333322 45789999999999999976431 1 26666
Q ss_pred EEcCCCC-CCceeEEEEEEeccCC---------------------------CC---CcchhhHHHHHHHHHHHhcCCccc
Q 006687 88 IIRAPRG-DGKEAIVLVTPYNAVK---------------------------GG---VRETLSLGIAYSVFSLLTRVTWLA 136 (635)
Q Consensus 88 IlrApRg-dgtEAiVL~ap~~~~~---------------------------~~---~~~~~~valaLaLa~y~~r~~~wA 136 (635)
...+..+ .+...++|..+.|..- +. .++..|++.+++++ +......
T Consensus 58 ~~~~~~g~~~~~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l---~~~~~~~ 134 (485)
T PRK15026 58 RKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVL---ADENVVH 134 (485)
T ss_pred EEcCCCCCCCCCEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHH---HhCCCCC
Confidence 6554333 3345577766554321 10 12234555555543 4333446
Q ss_pred cceEEEeeCCCCCCchhHHHHHHhhcCCCCCCCCccccccccCCCCCcccccc--cccccchheeeeeEEeecCC--CCC
Q 006687 137 KDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKIS--YGIRRSGTMAAALVLGVAYG--NEN 212 (635)
Q Consensus 137 KDIIfl~~D~~~~~~~G~~AWL~aYh~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~raG~IqaAl~le~~~~--~~~ 212 (635)
.+|.++|+-+++-+..|.++....+-.+. -.++- |+.+. .....+|.+..-..+.+... ...
T Consensus 135 ~~i~~l~t~dEE~G~~ga~~l~~~~~~~~----~~i~~----------e~~~~g~l~~g~~G~~~~~~~~~~~r~~~~~g 200 (485)
T PRK15026 135 GPLEVLLTMTEEAGMDGAFGLQSNWLQAD----ILINT----------DSEEEGEIYMGCAGGIDFTSNLHLDREAVPAG 200 (485)
T ss_pred CCEEEEEEcccccCcHhHHHhhhccCCcC----EEEEe----------CCCCCCeEEEeCCCcceEEEEEEEEEEecCCC
Confidence 79999997554445678887755332211 11111 11000 12245666654444433331 013
Q ss_pred cceEEEEeecCC----CCCCchhHHHHHHHHH
Q 006687 213 EDTLGIYAEASN----GQMPNLDLINIVHYLA 240 (635)
Q Consensus 213 ~~~l~I~~eG~N----GqLPNLDLiN~v~~ia 240 (635)
...+.|.+.|+. |.-|+...-|.+..++
T Consensus 201 ~~~~~i~v~Gl~ggHsG~~i~~g~~nAi~~la 232 (485)
T PRK15026 201 FETFKLTLKGLKGGHSGGEIHVGLGNANKLLV 232 (485)
T ss_pred ceEEEEEEECCCCcCChHHHCCCCccHHHHHH
Confidence 467899999955 3345555445554444
No 50
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=92.79 E-value=1.2 Score=47.40 Aligned_cols=113 Identities=15% Similarity=0.150 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhhhcCCCCCccchHHHHHHHHHhc-CCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEE
Q 006687 9 EANKLIKELNNLHSNPLGATTESHGIIAKYMSNL-GAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVG 87 (635)
Q Consensus 9 ~a~~~~~ei~~l~~~~~~~~~~~~~~i~~~l~~l-Gle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~Nvyg 87 (635)
+..++++++-+..+-+++ ..+..+||.++|+++ |+++.. .|.|+++
T Consensus 8 ~~~~~l~~li~ips~s~~-e~~~~~~l~~~l~~~~~~~~~~--------------------------------~~~~~~~ 54 (352)
T PRK13007 8 DLAELTAALVDIPSVSGD-EKALADAVEAALRALPHLEVIR--------------------------------HGNSVVA 54 (352)
T ss_pred HHHHHHHHHhcCCCCCch-HHHHHHHHHHHHHhCcCceEEe--------------------------------cCCeEEE
Confidence 444555666555544433 456899999999996 766431 2458888
Q ss_pred EEcCCCCCCceeEEEEEEeccCC-----------------CCCcchhhHHHHHHHHHHHhcCCccccceEEEee-CCCCC
Q 006687 88 IIRAPRGDGKEAIVLVTPYNAVK-----------------GGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVA-DSQYG 149 (635)
Q Consensus 88 IlrApRgdgtEAiVL~ap~~~~~-----------------~~~~~~~~valaLaLa~y~~r~~~wAKDIIfl~~-D~~~~ 149 (635)
.+.. +.+ ..|++.+++|..- +..+...+++.+++.++.+++ ..++|.|+++ |.+.+
T Consensus 55 ~~~~--~~~-~~i~l~~H~Dtvp~~~~~~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~---~~~~i~~~~~~~EE~~ 128 (352)
T PRK13007 55 RTDL--GRP-SRVVLAGHLDTVPVADNLPSRREGDRLYGCGASDMKSGLAVMLHLAATLAE---PAHDLTLVFYDCEEVE 128 (352)
T ss_pred EccC--CCC-CeEEEEccccccCCCCCCCcceeCCEEEccCcccccHHHHHHHHHHHHhhc---cCCCeEEEEEeccccc
Confidence 8732 222 2599988776532 112345788888999998853 4679999985 54432
Q ss_pred C-chhHHHHHHh
Q 006687 150 E-YAPVAAWLRD 160 (635)
Q Consensus 150 ~-~~G~~AWL~a 160 (635)
. ..|+...++.
T Consensus 129 ~~~~G~~~~~~~ 140 (352)
T PRK13007 129 AEANGLGRLARE 140 (352)
T ss_pred CCcccHHHHHHh
Confidence 2 2578777664
No 51
>PRK07205 hypothetical protein; Provisional
Probab=92.77 E-value=1.7 Score=48.35 Aligned_cols=98 Identities=12% Similarity=0.088 Sum_probs=62.3
Q ss_pred chHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcCCCCCCceeEEEEEEeccC
Q 006687 30 ESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNAV 109 (635)
Q Consensus 30 ~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrApRgdgtEAiVL~ap~~~~ 109 (635)
+..+|+.++|+++|+++..+. .|.|+++.. +++.+.++|..++|..
T Consensus 42 ~~~~~~~~~l~~~g~~~~~~~------------------------------~~~~~~~~~----g~~~~~lll~gH~DvV 87 (444)
T PRK07205 42 DVLEATLDLCQGLGFKTYLDP------------------------------KGYYGYAEI----GQGEELLAILCHLDVV 87 (444)
T ss_pred HHHHHHHHHHHhCCCEEEEcC------------------------------CCeEEEEEe----cCCCcEEEEEEeeccC
Confidence 467788899999999876431 122443332 3344678888877653
Q ss_pred CC------------------------CCcchhhHHHHHHHHHHHhcCC-ccccceEEEeeCCCCCCchhHHHHHHhh
Q 006687 110 KG------------------------GVRETLSLGIAYSVFSLLTRVT-WLAKDIIWLVADSQYGEYAPVAAWLRDY 161 (635)
Q Consensus 110 ~~------------------------~~~~~~~valaLaLa~y~~r~~-~wAKDIIfl~~D~~~~~~~G~~AWL~aY 161 (635)
-. ..+...+++.+|..++.+++.. -+.+||.|+++-+++....|++.+++.+
T Consensus 88 p~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~~~~~~~~~~i~l~~~~dEE~g~~g~~~~~~~~ 164 (444)
T PRK07205 88 PEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALLDAGVQFNKRIRFIFGTDEETLWRCMNRYNEVE 164 (444)
T ss_pred CCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCcccHHHHHhCC
Confidence 11 1233467777776667776543 4578999999633333357899998864
No 52
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=92.71 E-value=2.1 Score=46.80 Aligned_cols=116 Identities=11% Similarity=0.044 Sum_probs=68.5
Q ss_pred HHHHHHHHHhhhcCCCCCccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEE
Q 006687 10 ANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGII 89 (635)
Q Consensus 10 a~~~~~ei~~l~~~~~~~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIl 89 (635)
..++.+++....+-+++ ..+..+||.++|+++|+++.... ...|++|.+
T Consensus 15 ~~~~l~~Lv~ips~s~~-e~~~~~~l~~~l~~~g~~~~~~~------------------------------~~~~v~~~~ 63 (395)
T TIGR03526 15 MIRFLRDLVAIPSESGD-EGRVALRIKQEMEKLGFDKVEID------------------------------PMGNVLGYI 63 (395)
T ss_pred HHHHHHHHhcCCCCCCc-hHHHHHHHHHHHHHcCCceEEEc------------------------------CCCcEEEEe
Confidence 33444444444433332 44678999999999998742110 013788877
Q ss_pred cCCCCCCceeEEEEEEeccCC------------------------CCCcchhhHHHHHHHHHHHhcCCc-cccceEEEee
Q 006687 90 RAPRGDGKEAIVLVTPYNAVK------------------------GGVRETLSLGIAYSVFSLLTRVTW-LAKDIIWLVA 144 (635)
Q Consensus 90 rApRgdgtEAiVL~ap~~~~~------------------------~~~~~~~~valaLaLa~y~~r~~~-wAKDIIfl~~ 144 (635)
. ++...+++...+|... +..+...+++.++..++.+++... ..+|++++++
T Consensus 64 g----~~~~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~~~~~~~v~~~~~ 139 (395)
T TIGR03526 64 G----HGPKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGT 139 (395)
T ss_pred C----CCCCEEEEEeeccccCCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHHcCCCCCceEEEEEe
Confidence 2 3345688877665421 111234568878887888876553 4669988887
Q ss_pred CCCC-CCchhHHHHHHh
Q 006687 145 DSQY-GEYAPVAAWLRD 160 (635)
Q Consensus 145 D~~~-~~~~G~~AWL~a 160 (635)
.+++ +.-.|.+..+++
T Consensus 140 ~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03526 140 VQEEDCDGLCWQYIIEE 156 (395)
T ss_pred cccccCCcHhHHHHHhc
Confidence 4443 222355566654
No 53
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=92.65 E-value=2 Score=46.97 Aligned_cols=121 Identities=11% Similarity=0.023 Sum_probs=72.8
Q ss_pred HHHHHHHhhhcCCCCC-ccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEc
Q 006687 12 KLIKELNNLHSNPLGA-TTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIR 90 (635)
Q Consensus 12 ~~~~ei~~l~~~~~~~-~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlr 90 (635)
++++|+=...+.+... ..+..+||.++|+++|+++...... ..+.|+++.++
T Consensus 13 ~~l~~lv~ipS~~~~~~~~~~~~~l~~~l~~~G~~~~~~~~~---------------------------~g~~~l~~~~~ 65 (400)
T TIGR01880 13 TRFREYLRINTVQPNPDYAACVDFLIKQADELGLARKTIEFV---------------------------PGKPVVVLTWP 65 (400)
T ss_pred HHHHHHhccCccCCCccHHHHHHHHHHHHHhCCCceeEEEec---------------------------CCceeEEEEEe
Confidence 4455554444443222 3467999999999999987643310 02468888875
Q ss_pred CCCCCCceeEEEEEEeccCC------------------------CCCcchhhHHHHHHHHHHHhcCC-ccccceEEEeeC
Q 006687 91 APRGDGKEAIVLVTPYNAVK------------------------GGVRETLSLGIAYSVFSLLTRVT-WLAKDIIWLVAD 145 (635)
Q Consensus 91 ApRgdgtEAiVL~ap~~~~~------------------------~~~~~~~~valaLaLa~y~~r~~-~wAKDIIfl~~D 145 (635)
+.... .--+++.+++|..- +..+...+++.++..++.+++.. =+.++|.|+|+-
T Consensus 66 g~~~~-~~~i~l~~H~DvVp~~~~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~~~~~~~v~l~~~~ 144 (400)
T TIGR01880 66 GSNPE-LPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASGFKFKRTIHISFVP 144 (400)
T ss_pred cCCCC-CCeEEEEcccccCCCCcccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcCCCCCceEEEEEeC
Confidence 42111 12577777664421 00123456777777778787643 347899999964
Q ss_pred CCC-CCchhHHHHHHh
Q 006687 146 SQY-GEYAPVAAWLRD 160 (635)
Q Consensus 146 ~~~-~~~~G~~AWL~a 160 (635)
+++ +...|++..+++
T Consensus 145 dEE~g~~~G~~~~~~~ 160 (400)
T TIGR01880 145 DEEIGGHDGMEKFAKT 160 (400)
T ss_pred CcccCcHhHHHHHHHh
Confidence 444 334689877764
No 54
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=92.63 E-value=1.6 Score=47.18 Aligned_cols=116 Identities=17% Similarity=0.240 Sum_probs=73.3
Q ss_pred HHHHHHHhhhcCCCCCccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcC
Q 006687 12 KLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRA 91 (635)
Q Consensus 12 ~~~~ei~~l~~~~~~~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrA 91 (635)
++.+++-..-+-++ ++.++.+||.++|+++|+++.... ..+.|+++.+..
T Consensus 3 ~~~~~L~~ips~s~-~E~~~a~~l~~~l~~~g~~~~~~~-----------------------------~~~~~vva~~~~ 52 (363)
T TIGR01891 3 DIRRHLHEHPELSF-EEFKTSSLIAEALESLGIEVRRGV-----------------------------GGATGVVATIGG 52 (363)
T ss_pred HHHHHHhcCCCCCC-chHHHHHHHHHHHHHcCCceEecC-----------------------------CCCcEEEEEEeC
Confidence 45666766655443 356789999999999999975310 024688888754
Q ss_pred CCCCCceeEEEEEEeccCCC-------------CC----cchhhHHHHHHHHHHHhcCC-ccccceEEEeeCCCCCCchh
Q 006687 92 PRGDGKEAIVLVTPYNAVKG-------------GV----RETLSLGIAYSVFSLLTRVT-WLAKDIIWLVADSQYGEYAP 153 (635)
Q Consensus 92 pRgdgtEAiVL~ap~~~~~~-------------~~----~~~~~valaLaLa~y~~r~~-~wAKDIIfl~~D~~~~~~~G 153 (635)
.. ++ -.|++....|..-. +. ....+++.+++.++.+++.. =.-+||.|+++-+++. ..|
T Consensus 53 ~~-~~-~~i~l~gH~DtVp~~~~~~~pf~~~~~g~l~g~G~~~~~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~-~~G 129 (363)
T TIGR01891 53 GK-PG-PVVALRADMDALPIQEQTDLPYKSTNPGVMHACGHDLHTAILLGTAKLLKKLADLLEGTVRLIFQPAEEG-GGG 129 (363)
T ss_pred CC-CC-CEEEEEeccCCCCcccccCCCcccCCCCceecCcCHHHHHHHHHHHHHHHhchhhCCceEEEEEeecCcC-cch
Confidence 22 12 46888887765310 00 00134677777777777542 2357999999644433 268
Q ss_pred HHHHHHh
Q 006687 154 VAAWLRD 160 (635)
Q Consensus 154 ~~AWL~a 160 (635)
++.++++
T Consensus 130 ~~~~~~~ 136 (363)
T TIGR01891 130 ATKMIED 136 (363)
T ss_pred HHHHHHC
Confidence 8888765
No 55
>PRK08262 hypothetical protein; Provisional
Probab=91.85 E-value=1.4 Score=49.70 Aligned_cols=123 Identities=12% Similarity=0.042 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhhhcCCCCC-c-------cchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCcccc
Q 006687 9 EANKLIKELNNLHSNPLGA-T-------TESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSL 80 (635)
Q Consensus 9 ~a~~~~~ei~~l~~~~~~~-~-------~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~ 80 (635)
+.-++++++=...+-+.+. . .+..+||.++|+++|.++..+. .
T Consensus 45 ~~v~~L~~lv~i~S~s~~~~~~~~~~~~~~~~~~L~~~~~~~g~~~~~~~-----------------------------~ 95 (486)
T PRK08262 45 AAAERLSEAIRFRTISNRDRAEDDAAAFDALHAHLEESYPAVHAALEREV-----------------------------V 95 (486)
T ss_pred HHHHHHHHhcccceeccCCCCcccHHHHHHHHHHHHHhChhhhceeEEEE-----------------------------E
Confidence 3444555555544444321 1 1367888888888898765443 1
Q ss_pred ccceEEEEEcCCCCCCceeEEEEEEeccCC--------------------------CCCcchhhHHHHHHHHHHHhcCC-
Q 006687 81 YGINTVGIIRAPRGDGKEAIVLVTPYNAVK--------------------------GGVRETLSLGIAYSVFSLLTRVT- 133 (635)
Q Consensus 81 ~G~NvygIlrApRgdgtEAiVL~ap~~~~~--------------------------~~~~~~~~valaLaLa~y~~r~~- 133 (635)
.|.|+++.++.+ +.+...+++..++|... +..++..+++.++..++++++..
T Consensus 96 ~~~~vv~~~~g~-~~~~~~ill~gH~DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~~~ 174 (486)
T PRK08262 96 GGHSLLYTWKGS-DPSLKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLAQGF 174 (486)
T ss_pred CCccEEEEEECC-CCCCCeEEEECcccccCCCCCCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHHcCC
Confidence 245777766542 12335688877665431 11123567888888888887654
Q ss_pred ccccceEEEeeCCCCCCchhHHHHHHhh
Q 006687 134 WLAKDIIWLVADSQYGEYAPVAAWLRDY 161 (635)
Q Consensus 134 ~wAKDIIfl~~D~~~~~~~G~~AWL~aY 161 (635)
-+.++|.|+|+-+++.+..|++.+++.+
T Consensus 175 ~l~~~I~llf~~dEE~g~~G~~~l~~~l 202 (486)
T PRK08262 175 QPRRTIYLAFGHDEEVGGLGARAIAELL 202 (486)
T ss_pred CCCCeEEEEEecccccCCcCHHHHHHHH
Confidence 3678999999633332334888877653
No 56
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=91.70 E-value=2.1 Score=46.14 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=68.6
Q ss_pred HHHHHHHhhhcCCCCCccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcC
Q 006687 12 KLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRA 91 (635)
Q Consensus 12 ~~~~ei~~l~~~~~~~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrA 91 (635)
++++++-...+-+.. ..+..+||.++|+++|+++..++.. ...|+++.. .
T Consensus 3 ~~l~~lv~ips~s~~-e~~~~~~i~~~l~~~G~~~~~~~~~----------------------------~~~~~~~~~-g 52 (370)
T TIGR01246 3 ELAKELISRPSVTPN-DAGCQDIIAERLEKLGFEIEWMHFG----------------------------DTKNLWATR-G 52 (370)
T ss_pred HHHHHHhcCCCCCcc-hHHHHHHHHHHHHHCCCEEEEEecC----------------------------CCceEEEEe-c
Confidence 455666665554433 4568899999999999997755310 124787763 2
Q ss_pred CCCCCceeEEEEEEeccCCCC------------------------CcchhhHHH-HHHHHHHHhcCCccccceEEEeeCC
Q 006687 92 PRGDGKEAIVLVTPYNAVKGG------------------------VRETLSLGI-AYSVFSLLTRVTWLAKDIIWLVADS 146 (635)
Q Consensus 92 pRgdgtEAiVL~ap~~~~~~~------------------------~~~~~~val-aLaLa~y~~r~~~wAKDIIfl~~D~ 146 (635)
.+...+++..++|....+ .+...+++. +.++.++.+...-+.++|+|+|+-+
T Consensus 53 ---~~~~~i~~~~H~DtVp~~~~~~W~~~p~~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~~~~~~~v~~~~~~d 129 (370)
T TIGR01246 53 ---TGEPVLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKNPDHKGSISLLITSD 129 (370)
T ss_pred ---CCCcEEEEEccccccCCCCccccccCCCCcEEECCEEEecccccchHHHHHHHHHHHHHHHhcCCCCCcEEEEEEec
Confidence 233568888777653210 022345554 4444444454445688999999644
Q ss_pred CCC-CchhHHHHHH
Q 006687 147 QYG-EYAPVAAWLR 159 (635)
Q Consensus 147 ~~~-~~~G~~AWL~ 159 (635)
++. ...|.+.-++
T Consensus 130 EE~~~~~G~~~~~~ 143 (370)
T TIGR01246 130 EEGTAIDGTKKVVE 143 (370)
T ss_pred cccCCCcCHHHHHH
Confidence 432 2357777665
No 57
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=90.30 E-value=1.6 Score=48.32 Aligned_cols=82 Identities=11% Similarity=0.129 Sum_probs=61.5
Q ss_pred cccceEEEEEcCCCCCCceeEEEEEEeccC-------------CCCCcchhhHHHHHHHHHHHhcCCccccceEEEeeCC
Q 006687 80 LYGINTVGIIRAPRGDGKEAIVLVTPYNAV-------------KGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADS 146 (635)
Q Consensus 80 ~~G~NvygIlrApRgdgtEAiVL~ap~~~~-------------~~~~~~~~~valaLaLa~y~~r~~~wAKDIIfl~~D~ 146 (635)
....|+.+...+. .-..++++..+.++.. .+..+|+.|++..|.+||+|++.. =-++|.|++.+.
T Consensus 182 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~GA~DNasGva~llEiAr~l~~~~-p~~~v~f~~~~a 259 (435)
T COG2234 182 LTSKNVAATISGS-SQIIEAIIGTAHSDSLGLLGAHIDSVPTGPGADDNASGVAALLELARVLKGNP-PKRTVRFVAFGA 259 (435)
T ss_pred eEEEEEeeeeecc-cccceEEEeccCCCceeeecccccCCcCCCCcccccHHHHHHHHHHHHHhcCC-CCceEEEEEecc
Confidence 4667777777666 3355555555544321 234567899999999999999988 367999999998
Q ss_pred CCCCchhHHHHHHhhcC
Q 006687 147 QYGEYAPVAAWLRDYHT 163 (635)
Q Consensus 147 ~~~~~~G~~AWL~aYh~ 163 (635)
++.+..|-+++++.+..
T Consensus 260 EE~Gl~GS~~~~~~~~~ 276 (435)
T COG2234 260 EESGLLGSEAYVKRLSK 276 (435)
T ss_pred hhhcccccHHHHhcCCc
Confidence 87788999999988875
No 58
>PRK07318 dipeptidase PepV; Reviewed
Probab=90.15 E-value=3.3 Score=46.52 Aligned_cols=47 Identities=13% Similarity=0.234 Sum_probs=33.0
Q ss_pred cchhhHHHHHHHHHHHhcCC-ccccceEEEee-CCCCCCchhHHHHHHhh
Q 006687 114 RETLSLGIAYSVFSLLTRVT-WLAKDIIWLVA-DSQYGEYAPVAAWLRDY 161 (635)
Q Consensus 114 ~~~~~valaLaLa~y~~r~~-~wAKDIIfl~~-D~~~~~~~G~~AWL~aY 161 (635)
+...+++.++..++.+++.. -+.+||.|+|+ |-+. +..|++.+++.+
T Consensus 118 DmKgg~aa~l~Al~~l~~~g~~~~~~i~l~~~~DEE~-g~~G~~~l~~~~ 166 (466)
T PRK07318 118 DDKGPTMAAYYALKIIKELGLPLSKKVRFIVGTDEES-GWKCMDYYFEHE 166 (466)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCCccEEEEEEccccc-CchhHHHHHHhC
Confidence 34567777777777777543 35789999996 5443 457999999874
No 59
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=90.14 E-value=5 Score=43.78 Aligned_cols=101 Identities=13% Similarity=0.096 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhhcCCCCCccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEE
Q 006687 10 ANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGII 89 (635)
Q Consensus 10 a~~~~~ei~~l~~~~~~~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIl 89 (635)
..++.+++....+-+++ ..+..+||.++|+++|+++... . ...|++|.+
T Consensus 15 ~~~~~~~lv~i~s~s~~-e~~~~~~l~~~l~~~G~~~~~~----~--------------------------~~~n~~~~~ 63 (395)
T TIGR03320 15 MIRFLRDLVAIPSESGD-EKRVAERIKEEMEKLGFDKVEI----D--------------------------PMGNVLGYI 63 (395)
T ss_pred HHHHHHHHHcCCCCCCc-hHHHHHHHHHHHHHhCCcEEEE----C--------------------------CCCCEEEEe
Confidence 33444444444433322 4578999999999999974211 0 013678876
Q ss_pred cCCCCCCceeEEEEEEeccCC------------------------CCCcchhhHHHHHHHHHHHhcCC-ccccceEEEee
Q 006687 90 RAPRGDGKEAIVLVTPYNAVK------------------------GGVRETLSLGIAYSVFSLLTRVT-WLAKDIIWLVA 144 (635)
Q Consensus 90 rApRgdgtEAiVL~ap~~~~~------------------------~~~~~~~~valaLaLa~y~~r~~-~wAKDIIfl~~ 144 (635)
. .+...+++...+|... +..+...+++.++..++.+++.. ....+|+|+++
T Consensus 64 g----~~~~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g~~~~~~i~~~~~ 139 (395)
T TIGR03320 64 G----HGPKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLGLLDDYTLLVTGT 139 (395)
T ss_pred C----CCCcEEEEEecccccCCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHHcCCCCCceEEEEec
Confidence 2 2234587877665421 11123467888888888887654 35668988886
Q ss_pred C
Q 006687 145 D 145 (635)
Q Consensus 145 D 145 (635)
.
T Consensus 140 ~ 140 (395)
T TIGR03320 140 V 140 (395)
T ss_pred c
Confidence 3
No 60
>PLN02280 IAA-amino acid hydrolase
Probab=89.98 E-value=5.5 Score=45.34 Aligned_cols=99 Identities=9% Similarity=0.113 Sum_probs=65.5
Q ss_pred ccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcCCCCCCceeEEEEEEec
Q 006687 28 TTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYN 107 (635)
Q Consensus 28 ~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrApRgdgtEAiVL~ap~~ 107 (635)
+.+..++|.++|+++|+++..+ ..+.|++|.+ . ++.+ ..+++.+.+|
T Consensus 116 E~~t~~~i~~~L~~~G~~~~~~------------------------------~~~~~vva~~-g-~~~~-~~I~l~gh~D 162 (478)
T PLN02280 116 EYKTSELVRSELDRMGIMYRYP------------------------------LAKTGIRAWI-G-TGGP-PFVAVRADMD 162 (478)
T ss_pred HHHHHHHHHHHHHHCCCeEEec------------------------------CCCCEEEEEE-C-CCCC-CEEEEEEecC
Confidence 4568999999999999996532 1356999987 2 1223 5688888765
Q ss_pred cCCCC--------C---------cchhhHHHHHHHHHHHhcCC-ccccceEEEeeCCCCCCchhHHHHHHh
Q 006687 108 AVKGG--------V---------RETLSLGIAYSVFSLLTRVT-WLAKDIIWLVADSQYGEYAPVAAWLRD 160 (635)
Q Consensus 108 ~~~~~--------~---------~~~~~valaLaLa~y~~r~~-~wAKDIIfl~~D~~~~~~~G~~AWL~a 160 (635)
..-.+ + .-..+++.++++++++++.. =+.-++.|+|+-+++.. .|.++-+++
T Consensus 163 aVP~~e~~~w~~~p~~~G~~h~cGhd~~~A~~l~a~~~L~~~~~~~~g~V~~if~pdEE~g-~Ga~~li~~ 232 (478)
T PLN02280 163 ALPIQEAVEWEHKSKVAGKMHACGHDAHVAMLLGAAKILKSREHLLKGTVVLLFQPAEEAG-NGAKRMIGD 232 (478)
T ss_pred CCcccCCCCCCCCCCCCCeEEeCCCcHHHHHHHHHHHHHHhccccCCceEEEEeccccccc-chHHHHHHC
Confidence 43110 0 01236788888889997543 24669999997544433 488887764
No 61
>PRK08554 peptidase; Reviewed
Probab=89.78 E-value=4.3 Score=45.49 Aligned_cols=99 Identities=14% Similarity=0.224 Sum_probs=62.0
Q ss_pred cchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcCCCCCCceeEEEEEEecc
Q 006687 29 TESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYNA 108 (635)
Q Consensus 29 ~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrApRgdgtEAiVL~ap~~~ 108 (635)
.+..+|+.++|+++|+++..+... ...|+++... .+.+.+++..++|.
T Consensus 27 ~~~~~~l~~~l~~~G~~~~~~~~~----------------------------~~~~l~~~~~----~~~~~l~l~gH~Dt 74 (438)
T PRK08554 27 KECPKFIKDTLESWGIESELIEKD----------------------------GYYAVYGEIG----EGKPKLLFMAHFDV 74 (438)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecC----------------------------CceEEEEEeC----CCCCEEEEEecccc
Confidence 468899999999999997654310 1257777752 23356888776654
Q ss_pred CC-----------------------CCCcchhhHHHHHHHHHHHhcCCccccceEEEee-CCCCCCchhHHHHHHhh
Q 006687 109 VK-----------------------GGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVA-DSQYGEYAPVAAWLRDY 161 (635)
Q Consensus 109 ~~-----------------------~~~~~~~~valaLaLa~y~~r~~~wAKDIIfl~~-D~~~~~~~G~~AWL~aY 161 (635)
.- +..+...+++.++..++++++.. +.++|.|+++ |.+.+...|+ ..++.+
T Consensus 75 Vp~~~~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~~-~~~~i~l~~~~dEE~g~~~~~-~~~~~~ 149 (438)
T PRK08554 75 VPVNPEEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKEP-LNGKVIFAFTGDEEIGGAMAM-HIAEKL 149 (438)
T ss_pred CCCCccccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccCccccH-HHHHHH
Confidence 21 10123467888787788887765 5789999995 5443332233 444433
No 62
>PRK07079 hypothetical protein; Provisional
Probab=87.79 E-value=8.8 Score=43.12 Aligned_cols=106 Identities=11% Similarity=0.023 Sum_probs=66.0
Q ss_pred chHHHH----HHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcCCCCCCceeEEEEEE
Q 006687 30 ESHGII----AKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTP 105 (635)
Q Consensus 30 ~~~~~i----~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrApRgdgtEAiVL~ap 105 (635)
+..+|+ .++|+++|+++..+.... .....||++.+... .+...++|..+
T Consensus 41 ~~~~~l~~~~~~~l~~~G~~~~~~~~~~-------------------------~~~~~~vva~~~~~--~~~~~lll~gH 93 (469)
T PRK07079 41 ALRAYLTDEIAPALAALGFTCRIVDNPV-------------------------AGGGPFLIAERIED--DALPTVLIYGH 93 (469)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEecCC-------------------------CCCCCEEEEEeCCC--CCCCEEEEEcc
Confidence 445555 568999999987653110 01246899886431 12346888776
Q ss_pred eccCCC---------C----------------CcchhhHHHHHHHHHHHhc-C-CccccceEEEeeCCCCCCchhHHHHH
Q 006687 106 YNAVKG---------G----------------VRETLSLGIAYSVFSLLTR-V-TWLAKDIIWLVADSQYGEYAPVAAWL 158 (635)
Q Consensus 106 ~~~~~~---------~----------------~~~~~~valaLaLa~y~~r-~-~~wAKDIIfl~~D~~~~~~~G~~AWL 158 (635)
+|..-. + .+...+++..++.++.+++ . .=+..+|.|+++-+++....|++..+
T Consensus 94 ~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~~~~~~~~~~i~~~~~~dEE~g~~G~~~l~ 173 (469)
T PRK07079 94 GDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLAARGGRLGFNVKLLIEMGEEIGSPGLAEVC 173 (469)
T ss_pred cCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccCCccHHHHH
Confidence 653210 1 1335677777776677643 2 33577999999744444557999999
Q ss_pred Hhhc
Q 006687 159 RDYH 162 (635)
Q Consensus 159 ~aYh 162 (635)
+++.
T Consensus 174 ~~~~ 177 (469)
T PRK07079 174 RQHR 177 (469)
T ss_pred HHhH
Confidence 9874
No 63
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=85.38 E-value=8.4 Score=43.17 Aligned_cols=80 Identities=16% Similarity=0.333 Sum_probs=56.8
Q ss_pred cccceEEEEEc-CCC----CCCceeEEEEEEeccCC-------CCCcchhhHHHHHHHHHHHhcCC-c---c-ccceEEE
Q 006687 80 LYGINTVGIIR-APR----GDGKEAIVLVTPYNAVK-------GGVRETLSLGIAYSVFSLLTRVT-W---L-AKDIIWL 142 (635)
Q Consensus 80 ~~G~NvygIlr-ApR----gdgtEAiVL~ap~~~~~-------~~~~~~~~valaLaLa~y~~r~~-~---w-AKDIIfl 142 (635)
..=.|+.|.+- +-| |..--.|++++.||+-. +.+.|.+|+...|-|+|.|++-. + - .-++.|.
T Consensus 191 ~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgADSNGSGvvaLLelarlfSkly~ypsTrakYnLlF~ 270 (555)
T KOG2526|consen 191 YKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGADSNGSGVVALLELARLFSKLYDYPSTRAKYNLLFI 270 (555)
T ss_pred CccceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHhcCcccccceeEEEE
Confidence 45679999998 666 33355799999997631 22334678878888999886421 1 1 3488999
Q ss_pred eeCCCCCCchhHHHHHH
Q 006687 143 VADSQYGEYAPVAAWLR 159 (635)
Q Consensus 143 ~~D~~~~~~~G~~AWL~ 159 (635)
.+++.--.++|.+.|||
T Consensus 271 lt~aG~lNyqGTkkWLe 287 (555)
T KOG2526|consen 271 LTAAGKLNYQGTKKWLE 287 (555)
T ss_pred EccCccccccchhhhhh
Confidence 99864335899999999
No 64
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=84.48 E-value=16 Score=41.27 Aligned_cols=135 Identities=13% Similarity=0.115 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhhhcCCCCC-ccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEE
Q 006687 9 EANKLIKELNNLHSNPLGA-TTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVG 87 (635)
Q Consensus 9 ~a~~~~~ei~~l~~~~~~~-~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~Nvyg 87 (635)
+..++.-++-.+.+..++. .....++|...|+++ .|.|. ||-.-+.. +. +|. .+...||||
T Consensus 9 ~v~~lt~~LV~~~SvtgT~GE~a~ad~l~~vL~~~---pYFqe--------hped~~~~----pi-~nD--pygR~nv~A 70 (553)
T COG4187 9 RVRALTLSLVSWPSVTGTPGEGAFADRLLGVLGEL---PYFQE--------HPEDLWLQ----PI-HND--PYGRRNVFA 70 (553)
T ss_pred HHHHHHHHHeeccccCCCcccccHHHHHHHHHhcC---chhhh--------ChHhhccc----CC-CCC--ccccceeEE
Confidence 3444444554455555554 334677777777654 44443 22111111 11 111 245789999
Q ss_pred EEcCCCCCCceeEEEEEEeccCCCC---------------------------------------------CcchhhHHHH
Q 006687 88 IIRAPRGDGKEAIVLVTPYNAVKGG---------------------------------------------VRETLSLGIA 122 (635)
Q Consensus 88 IlrApRgdgtEAiVL~ap~~~~~~~---------------------------------------------~~~~~~vala 122 (635)
.+|. +.++-.+|+...+|....+ .+-.+|+|..
T Consensus 71 lVrg--~~~k~tvvl~gH~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRGa~DMKsGlav~ 148 (553)
T COG4187 71 LVRG--GTSKRTVVLHGHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRGALDMKSGLAVH 148 (553)
T ss_pred EEec--CCCCceEEEeeccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCCchhhhhhhHHH
Confidence 9999 7788899999988764211 0113578888
Q ss_pred HHHHHHHhcCCccccceEEEeeCCCCCCchhHHHHHHhhcC
Q 006687 123 YSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHT 163 (635)
Q Consensus 123 LaLa~y~~r~~~wAKDIIfl~~D~~~~~~~G~~AWL~aYh~ 163 (635)
++..+-|....--.-++.|+-+-.++-++.||++=+.+--.
T Consensus 149 la~L~~fa~~~~~~GNlLf~a~pdEE~~s~G~r~a~~~L~~ 189 (553)
T COG4187 149 LACLEEFAARTDRQGNLLFMAVPDEEVESRGMREARPALPG 189 (553)
T ss_pred HHHHHHHhhCCCCCCcEEEEeccchhhhcccHHHHHHHHHH
Confidence 88666665446668899999754445578899988776544
No 65
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=83.26 E-value=14 Score=41.77 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=33.2
Q ss_pred cchhhHHHHHHHHHHHhcCC-ccccceEEEeeCCCCCCchhHHHHHHhhc
Q 006687 114 RETLSLGIAYSVFSLLTRVT-WLAKDIIWLVADSQYGEYAPVAAWLRDYH 162 (635)
Q Consensus 114 ~~~~~valaLaLa~y~~r~~-~wAKDIIfl~~D~~~~~~~G~~AWL~aYh 162 (635)
+...+++.++..++.+++.. -+.+||.|+++-+++....|++.++++..
T Consensus 117 D~Kg~~~a~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~~~~~~ 166 (466)
T TIGR01886 117 DDKGPSLAAYYAMKILKELGLPPSKKIRFVVGTNEETGWVDMDYYFKHEE 166 (466)
T ss_pred ccchHHHHHHHHHHHHHHhCCCCCCCEEEEEECccccCcccHHHHHhcCc
Confidence 34556766666667777554 45889999996334444679999998543
No 66
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=82.43 E-value=8.9 Score=41.75 Aligned_cols=115 Identities=12% Similarity=0.064 Sum_probs=68.6
Q ss_pred HHHHHhhhcCCCCCccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcCCC
Q 006687 14 IKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPR 93 (635)
Q Consensus 14 ~~ei~~l~~~~~~~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrApR 93 (635)
+++|-...+.+++ ..+..+||.++|+++|.+-. .. ...|.||++.+...
T Consensus 2 l~~Lv~ipS~s~~-e~~~~~~i~~~l~~~g~~~~----~~-------------------------~~~~~nvva~~~~~- 50 (373)
T TIGR01900 2 LQQIMDIFSPSDH-EGPIADEIEAALNNLELEGL----EV-------------------------FRFGDNVLARTDFG- 50 (373)
T ss_pred hHHHhCCCCCCch-HHHHHHHHHHHHhhccccCc----eE-------------------------EEECCEEEEecCCC-
Confidence 3455555444432 45688999999999975411 00 01245899886431
Q ss_pred CCCceeEEEEEEeccCCC----------------------------------CCcchhhHHHHHHHHHHHhc---CCccc
Q 006687 94 GDGKEAIVLVTPYNAVKG----------------------------------GVRETLSLGIAYSVFSLLTR---VTWLA 136 (635)
Q Consensus 94 gdgtEAiVL~ap~~~~~~----------------------------------~~~~~~~valaLaLa~y~~r---~~~wA 136 (635)
.+ ..+++..++|.... ..+...+++.++..++.+++ ..=+.
T Consensus 51 -~~-~~l~l~gH~DtVp~~~~~~~~W~~~p~~~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a~~~l~~~~~~~~~~ 128 (373)
T TIGR01900 51 -KA-SRVILAGHIDTVPIADNFPPKWLEPGDSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLHLAATLDGRAPETELK 128 (373)
T ss_pred -CC-CeEEEeCccccccCCCCChhhhccCcccccccccccccccCCEEEecCchhhhHHHHHHHHHHHHHhhhccccCCC
Confidence 22 35888666554210 01224578888888888842 22358
Q ss_pred cceEEEeeCCCC-C-CchhHHHHHHhh
Q 006687 137 KDIIWLVADSQY-G-EYAPVAAWLRDY 161 (635)
Q Consensus 137 KDIIfl~~D~~~-~-~~~G~~AWL~aY 161 (635)
.||.|+++.+++ + +..|++..++.+
T Consensus 129 ~~i~~~~~~dEE~~~~~~G~~~~~~~~ 155 (373)
T TIGR01900 129 HDLTLIAYDCEEVAAEKNGLGHIRDAH 155 (373)
T ss_pred CCEEEEEEecccccCCCCCHHHHHHhC
Confidence 899999975543 2 235899888763
No 67
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=81.75 E-value=12 Score=41.99 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=32.6
Q ss_pred hhhHHHHHHHHHHHhcCCc-cccceEEEeeCCCCCCchhHHHHHHhhc
Q 006687 116 TLSLGIAYSVFSLLTRVTW-LAKDIIWLVADSQYGEYAPVAAWLRDYH 162 (635)
Q Consensus 116 ~~~valaLaLa~y~~r~~~-wAKDIIfl~~D~~~~~~~G~~AWL~aYh 162 (635)
..+++.++..++.+++... +.++|.|+++-+++.+..|++.+++..+
T Consensus 108 KG~laa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~ 155 (447)
T TIGR01887 108 KGPTIAALYAMKILKELGLKLKKKIRFIFGTDEETGWACIDYYFEHEE 155 (447)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCCcEEEEEECCcccCcHhHHHHHHhcC
Confidence 4567766666677775443 4679999996444445679999998643
No 68
>PRK06156 hypothetical protein; Provisional
Probab=80.68 E-value=27 Score=39.99 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=35.0
Q ss_pred chhhHHHHHHHHHHHhcCC-ccccceEEEeeCCCCCCchhHHHHHHhhcCC
Q 006687 115 ETLSLGIAYSVFSLLTRVT-WLAKDIIWLVADSQYGEYAPVAAWLRDYHTP 164 (635)
Q Consensus 115 ~~~~valaLaLa~y~~r~~-~wAKDIIfl~~D~~~~~~~G~~AWL~aYh~~ 164 (635)
...+++.++..++++++.. =..++|.|+|+=+++.+..|++.++++++.+
T Consensus 155 ~Kgg~a~~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~~G~~~~~~~~~~~ 205 (520)
T PRK06156 155 DKGAIVTALYAMKAIKDSGLPLARRIELLVYTTEETDGDPLKYYLERYTPP 205 (520)
T ss_pred chHHHHHHHHHHHHHHHcCCCCCceEEEEEecccccCchhHHHHHHhcCCC
Confidence 3567887766667776543 3468999999633444456999999988753
No 69
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=75.70 E-value=8.3 Score=45.97 Aligned_cols=83 Identities=10% Similarity=0.113 Sum_probs=60.2
Q ss_pred cccceEEEEEcCCCCCCceeEEEEEEeccCCC-CCcchhhHHHHHHHHHHHh-----cCCccccceEEEeeCCCCCCchh
Q 006687 80 LYGINTVGIIRAPRGDGKEAIVLVTPYNAVKG-GVRETLSLGIAYSVFSLLT-----RVTWLAKDIIWLVADSQYGEYAP 153 (635)
Q Consensus 80 ~~G~NvygIlrApRgdgtEAiVL~ap~~~~~~-~~~~~~~valaLaLa~y~~-----r~~~wAKDIIfl~~D~~~~~~~G 153 (635)
..=.||.|.++..- ..--.+||-++.|+... ..+.+.|.++++.++|++. .|.- .|-|+|..=|.++.++.|
T Consensus 336 ~ki~NIig~I~Gs~-epD~~ViigahrDSw~~Ga~dp~sGta~Ll~i~~~~~~~~k~gwrP-~RtI~F~sWdAeEfGliG 413 (702)
T KOG2195|consen 336 TKIQNIIGKIEGSE-EPDRYVIIGAHRDSWTFGAIDPNSGTALLLEIARALSKLKKRGWRP-RRTILFASWDAEEFGLLG 413 (702)
T ss_pred eeeeeEEEEEecCc-CCCeEEEEeccccccccCCcCCCccHHHHHHHHHHHHHHHHcCCCc-cceEEEEEccchhccccc
Confidence 56789999999832 33346777787777653 2333568887877777774 2344 578888888988878999
Q ss_pred HHHHHHhhcCC
Q 006687 154 VAAWLRDYHTP 164 (635)
Q Consensus 154 ~~AWL~aYh~~ 164 (635)
.-.|+++|-..
T Consensus 414 StE~~E~~~~~ 424 (702)
T KOG2195|consen 414 STEWAEEYLKN 424 (702)
T ss_pred cHHHHHHHHHH
Confidence 99999999764
No 70
>PRK08737 acetylornithine deacetylase; Provisional
Probab=74.13 E-value=37 Score=36.98 Aligned_cols=114 Identities=11% Similarity=0.077 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHhhhcCCCC---CccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccc
Q 006687 7 VSEANKLIKELNNLHSNPLG---ATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGI 83 (635)
Q Consensus 7 ~~~a~~~~~ei~~l~~~~~~---~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~ 83 (635)
..++.++++++=.+.+.+.. ...+..+|+.++|+ |+++...... ....
T Consensus 5 ~~~~~~~l~~Lv~i~s~~~~~~~~e~~~~~~l~~~l~--g~~~~~~~~~---------------------------~~~~ 55 (364)
T PRK08737 5 LESTLDHLQALVSFDTRNPPRAITTGGIFDYLRAQLP--GFQVEVIDHG---------------------------AGAV 55 (364)
T ss_pred HHHHHHHHHHHhCCCCcCCCCCCCcHHHHHHHHHHhC--CCEEEEecCC---------------------------CCce
Confidence 34566667776666554311 23567889999997 8876544310 0235
Q ss_pred eEEEEEcCCCCCCceeEEEEEEeccCCCC----------------------CcchhhHHHHHHHHHHHhcCCccccceEE
Q 006687 84 NTVGIIRAPRGDGKEAIVLVTPYNAVKGG----------------------VRETLSLGIAYSVFSLLTRVTWLAKDIIW 141 (635)
Q Consensus 84 NvygIlrApRgdgtEAiVL~ap~~~~~~~----------------------~~~~~~valaLaLa~y~~r~~~wAKDIIf 141 (635)
|+++.. + ...++|..+.|..... .+-..+++.+++.++. .-.||+|
T Consensus 56 nli~~~----g--~~~lll~gH~DtVp~~~~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~------~~~~v~~ 123 (364)
T PRK08737 56 SLYAVR----G--TPKYLFNVHLDTVPDSPHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA------GDGDAAF 123 (364)
T ss_pred EEEEEc----C--CCeEEEEeeeCCCCCCCCCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc------cCCCEEE
Confidence 888752 2 2469998877663210 1113566666655542 2369999
Q ss_pred EeeCCCC-CCchhHHHHHHhh
Q 006687 142 LVADSQY-GEYAPVAAWLRDY 161 (635)
Q Consensus 142 l~~D~~~-~~~~G~~AWL~aY 161 (635)
+++-+++ +...|++.++++.
T Consensus 124 ~~~~dEE~g~~~g~~~~~~~~ 144 (364)
T PRK08737 124 LFSSDEEANDPRCVAAFLARG 144 (364)
T ss_pred EEEcccccCchhhHHHHHHhC
Confidence 9974444 3346888898754
No 71
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=73.10 E-value=19 Score=39.79 Aligned_cols=77 Identities=16% Similarity=0.063 Sum_probs=48.3
Q ss_pred ccceEEEEEcCCCCCCceeEEEEEEeccCCCCCcchhhHHHHHHHHHHHhcCCccccceEEEeeCCCCCCchhHHHHHHh
Q 006687 81 YGINTVGIIRAPRGDGKEAIVLVTPYNAVKGGVRETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRD 160 (635)
Q Consensus 81 ~G~NvygIlrApRgdgtEAiVL~ap~~~~~~~~~~~~~valaLaLa~y~~r~~~wAKDIIfl~~D~~~~~~~G~~AWL~a 160 (635)
.|.=.||=+.= +|...|-|++++..-+..-..||.+|++++..||+++++.+-. --.=|||.- +-.|.-+||..
T Consensus 114 ~G~L~ygE~~i-pG~s~~EillsthiCHPsmANdnLSG~~v~~~La~~L~~~~~r-ytYRflf~P----eTIGsI~yLsk 187 (386)
T PF09940_consen 114 DGSLTYGEFVI-PGESDEEILLSTHICHPSMANDNLSGPAVLTFLAKWLKQLPNR-YTYRFLFVP----ETIGSITYLSK 187 (386)
T ss_dssp S-EEEEEEEEE---SSS-EEEEEEE----S-TTTTHHHHHHHHHHHHHHTTS--S-SEEEEEEE-----TTHHHHHHHHH
T ss_pred CCceeEEEEEe-cCCCCCeEEEEEeccCcccccccccHHHHHHHHHHHHhcCCcC-ceEEEEEcc----ccHHHHHHHHH
Confidence 45555664443 4688999999998866554556688999999999999865443 556667653 45899999996
Q ss_pred hcC
Q 006687 161 YHT 163 (635)
Q Consensus 161 Yh~ 163 (635)
..+
T Consensus 188 n~~ 190 (386)
T PF09940_consen 188 NLD 190 (386)
T ss_dssp -GG
T ss_pred CHH
Confidence 544
No 72
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=70.95 E-value=63 Score=35.45 Aligned_cols=99 Identities=6% Similarity=-0.023 Sum_probs=64.1
Q ss_pred cchhhHHHHHHHHHHHhcCCccccceEEEeeCCCCCCchhHHHHHHhhcCCCCCCCCccccccccCCCCCcccccccccc
Q 006687 114 RETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIR 193 (635)
Q Consensus 114 ~~~~~valaLaLa~y~~r~~~wAKDIIfl~~D~~~~~~~G~~AWL~aYh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (635)
+|-.|++.++-++|.+++.+ ...|+.+++|=+++-+..|.+. -+|+-.+
T Consensus 178 DdR~g~a~l~e~l~~l~~~~-~~~~l~~~~tvqEEvG~rGA~~--aa~~i~p---------------------------- 226 (350)
T TIGR03107 178 DNRYGVLMILELLESLKDQE-LPNTLIAGANVQEEVGLRGAHV--STTKFNP---------------------------- 226 (350)
T ss_pred ccHHHHHHHHHHHHHhhhcC-CCceEEEEEEChhhcCchhhhh--HHhhCCC----------------------------
Confidence 34568999999999998765 3789999998665545677664 4554321
Q ss_pred cchheeeeeEEeecCCCCCcc--------eEEEEeecCCCCCCchhHHHHHHHHHhhccCceeEE
Q 006687 194 RSGTMAAALVLGVAYGNENED--------TLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKV 250 (635)
Q Consensus 194 raG~IqaAl~le~~~~~~~~~--------~l~I~~eG~NGqLPNLDLiN~v~~ia~~~~g~~v~l 250 (635)
-.||++|+....+..+ -.-|. -.-.|-.+|-.+.+-+..+|+ +.|+++..
T Consensus 227 -----D~aI~vDv~~~~d~~~~~~~~lg~Gp~i~-~~D~~~i~~~~l~~~l~~~A~-~~~I~~Q~ 284 (350)
T TIGR03107 227 -----DIFFAVDCSPAGDIYGDQGGKLGEGTLLR-FFDPGHIMLPRMKDFLLTTAE-EAGIKYQY 284 (350)
T ss_pred -----CEEEEEecCCcCCCCCCCccccCCCceEE-EecCCCCCCHHHHHHHHHHHH-HcCCCcEE
Confidence 1355555543322111 11221 112488999999999999996 67888765
No 73
>PRK09864 putative peptidase; Provisional
Probab=65.49 E-value=1.4e+02 Score=33.06 Aligned_cols=96 Identities=13% Similarity=0.167 Sum_probs=62.0
Q ss_pred chhhHHHHHHHHHHHhcCCccccceEEEeeCCCCCCchhHHHHHHhhcCCCCCCCCccccccccCCCCCccccccccccc
Q 006687 115 ETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRR 194 (635)
Q Consensus 115 ~~~~valaLaLa~y~~r~~~wAKDIIfl~~D~~~~~~~G~~AWL~aYh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 194 (635)
|-.|++.++-++|.++. ...|+.+++|=+++-++.|.+.= +|.-.+
T Consensus 176 nR~g~~~lle~l~~l~~---~~~~vy~v~TvQEEvGlrGA~~a--a~~i~P----------------------------- 221 (356)
T PRK09864 176 NRIGCAMMAELLQTVNN---PEITLYGVGSVEEEVGLRGAQTS--AEHIKP----------------------------- 221 (356)
T ss_pred cHHHHHHHHHHHHHhhc---CCCeEEEEEEcchhcchHHHHHH--HhcCCC-----------------------------
Confidence 45688988988888866 67899999986655456666543 332211
Q ss_pred chheeeeeEEeecCCCCCc--ce----E------EE-EeecCCCCCCchhHHHHHHHHHhhccCceeEEe
Q 006687 195 SGTMAAALVLGVAYGNENE--DT----L------GI-YAEASNGQMPNLDLINIVHYLAVHRQGLRVKVE 251 (635)
Q Consensus 195 aG~IqaAl~le~~~~~~~~--~~----l------~I-~~eG~NGqLPNLDLiN~v~~ia~~~~g~~v~l~ 251 (635)
.-||++|+.-..+.. +. . -| .++ .|-.+|-.+.+-+..+|+ +.|+++.+.
T Consensus 222 ----DiaIavDvt~~~d~p~~~~~~~~~~lG~Gp~i~~~D--~~~i~~~~l~~~l~~~A~-~~~Ip~Q~~ 284 (356)
T PRK09864 222 ----DVVIVLDTAVAGDVPGIDNIKYPLKLGQGPGLMLFD--KRYFPNQKLVAALKSCAA-HNDLPLQFS 284 (356)
T ss_pred ----CEEEEEecccCCCCCCCcccccccccCCCCeEEEcc--CCccCCHHHHHHHHHHHH-HcCCCceEE
Confidence 125666654322211 01 1 11 122 389999999999999996 788988764
No 74
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=51.00 E-value=45 Score=31.65 Aligned_cols=47 Identities=13% Similarity=0.068 Sum_probs=35.8
Q ss_pred cchhhHHHHHHHHHHHh-cCCccccceEEEeeCCCCCCch-hHHHHHHh
Q 006687 114 RETLSLGIAYSVFSLLT-RVTWLAKDIIWLVADSQYGEYA-PVAAWLRD 160 (635)
Q Consensus 114 ~~~~~valaLaLa~y~~-r~~~wAKDIIfl~~D~~~~~~~-G~~AWL~a 160 (635)
+...+++..++.++.++ ...=+.++|+|+++-+++.... |++.++++
T Consensus 36 D~k~~~~~~l~a~~~l~~~~~~~~~~i~~~~~~~EE~g~~~g~~~l~~~ 84 (189)
T PF01546_consen 36 DMKGGIAAMLAALKALKESGDDLPGNIIFLFTPDEEIGSIGGAKHLLEE 84 (189)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTTCSSEEEEEEESTCCGTSTTHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHhccccccccccccccccccCCCcchhhhhhhh
Confidence 34567888888888776 5566699999999744444445 99999997
No 75
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=48.60 E-value=62 Score=37.77 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=30.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 006687 508 TLKSATISSF-FIGLGLMSVINFATAEIGALLMVPMALMAH 547 (635)
Q Consensus 508 ~lk~~~Ll~~-~~~l~~la~lNFsLa~~~al~~vPl~l~~~ 547 (635)
..|....+.. ..++..+.+.||+++.+++++.+|+.++..
T Consensus 466 ~~~~~~v~~~~~~v~~~~~~~n~~ll~lv~~l~~pi~fi~~ 506 (617)
T KOG3566|consen 466 LLLIVFVLPFSSLVLPGLCLTNFALLKLVTILAVPIQFIMT 506 (617)
T ss_pred HhhhheeeccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 366778889999999999999999998654
No 76
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=47.25 E-value=79 Score=33.75 Aligned_cols=99 Identities=13% Similarity=0.176 Sum_probs=61.5
Q ss_pred chhhHHHHHHHHHHHhcCCccccceEEEeeCCCCCCchhHHHHHHhhcCCCCCCCCccccccccCCCCCccccccccccc
Q 006687 115 ETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIRR 194 (635)
Q Consensus 115 ~~~~valaLaLa~y~~r~~~wAKDIIfl~~D~~~~~~~G~~AWL~aYh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 194 (635)
|-.|++.++.++|.+++... ..|+.|+||=+++-+..|.+.--.+. +|
T Consensus 135 dR~g~~~lle~l~~l~~~~~-~~~v~~v~tvqEEvG~rGA~~aa~~i-~P------------------------------ 182 (292)
T PF05343_consen 135 DRAGCAVLLELLRELKEKEL-DVDVYFVFTVQEEVGLRGAKTAAFRI-KP------------------------------ 182 (292)
T ss_dssp HHHHHHHHHHHHHHHTTSS--SSEEEEEEESSCTTTSHHHHHHHHHH--C------------------------------
T ss_pred chhHHHHHHHHHHHHhhcCC-CceEEEEEEeeeeecCcceeeccccc-CC------------------------------
Confidence 34689999999999997655 49999999977665667766543322 22
Q ss_pred chheeeeeEEeecCCCC--Ccc-e-------EEEEeecCCCCCCchhHHHHHHHHHhhccCceeEEe
Q 006687 195 SGTMAAALVLGVAYGNE--NED-T-------LGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVE 251 (635)
Q Consensus 195 aG~IqaAl~le~~~~~~--~~~-~-------l~I~~eG~NGqLPNLDLiN~v~~ia~~~~g~~v~l~ 251 (635)
..||++|..-..+ ..+ . .-|. -+-.+-+||-++.+-+..+|+ +.|+++..+
T Consensus 183 ----D~ai~vD~~~a~d~~~~~~~~~~lG~Gp~i~-~~D~~~i~~~~l~~~l~~~A~-~~~Ip~Q~~ 243 (292)
T PF05343_consen 183 ----DIAIAVDVTPAGDTPGSDEKEQGLGKGPVIR-VGDSSMIPNPKLVDKLREIAE-ENGIPYQRE 243 (292)
T ss_dssp ----SEEEEEEEEEESSSTTSTTTTSCTTS-EEEE-EEETTEESHHHHHHHHHHHHH-HTT--EEEE
T ss_pred ----CEEEEEeeeccCCCCCCchhhccCCCCcEEE-EccCCCCCCHHHHHHHHHHHH-HcCCCeEEE
Confidence 1234444332111 001 0 1122 233448899999999999997 688999875
No 77
>PRK09961 exoaminopeptidase; Provisional
Probab=36.00 E-value=3.3e+02 Score=29.75 Aligned_cols=100 Identities=15% Similarity=0.161 Sum_probs=64.6
Q ss_pred cchhhHHHHHHHHHHHhcCCccccceEEEeeCCCCCCchhHHHHHHhhcCCCCCCCCccccccccCCCCCcccccccccc
Q 006687 114 RETLSLGIAYSVFSLLTRVTWLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGIR 193 (635)
Q Consensus 114 ~~~~~valaLaLa~y~~r~~~wAKDIIfl~~D~~~~~~~G~~AWL~aYh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (635)
+|-.|++.++.+++.+++.+ ...|++|++|.+++-+..|.+.--... .|
T Consensus 166 DnR~g~~~lle~l~~l~~~~-~~~~v~~~~tvqEEvG~rGa~~aa~~i-~p----------------------------- 214 (344)
T PRK09961 166 DDRLGCYLLVTLLRELHDAE-LPAEVWLVASSSEEVGLRGGQTATRAV-SP----------------------------- 214 (344)
T ss_pred hhhHhHHHHHHHHHHhhhcC-CCceEEEEEEcccccchHHHHHHHhcc-CC-----------------------------
Confidence 34568999999999887655 489999999998876778877653322 11
Q ss_pred cchheeeeeEEeecCCCCCcc-----------eEEEEeecCCCCCCchhHHHHHHHHHhhccCceeEEe
Q 006687 194 RSGTMAAALVLGVAYGNENED-----------TLGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVE 251 (635)
Q Consensus 194 raG~IqaAl~le~~~~~~~~~-----------~l~I~~eG~NGqLPNLDLiN~v~~ia~~~~g~~v~l~ 251 (635)
..||++|.....+..+ -.-|..- -.|-.+|-.++..+.++|. +.|+++.+.
T Consensus 215 -----d~~I~vDv~~~~d~~~~~~~~~~~lg~Gp~i~~~-D~~~i~~~~l~~~l~~~A~-~~~Ip~Q~~ 276 (344)
T PRK09961 215 -----DVAIVLDTACWAKNFDYGAANHRQIGNGPMLVLS-DKSLIAPPKLTAWIETVAA-EIGIPLQAD 276 (344)
T ss_pred -----CEEEEEeccCCCCCCCCCCCcccccCCCceEEEc-cCCcCCCHHHHHHHHHHHH-HcCCCcEEE
Confidence 1245555432211111 0112111 2388999999999999996 677887763
No 78
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=33.59 E-value=1.7e+02 Score=31.98 Aligned_cols=66 Identities=14% Similarity=0.091 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhhcCCCCCccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEE
Q 006687 10 ANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGII 89 (635)
Q Consensus 10 a~~~~~ei~~l~~~~~~~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIl 89 (635)
..++++++-...+-++. +.+.+++|.++|+++|.++...+ --|++|.+
T Consensus 5 ~~~lLk~Lv~~~s~SG~-E~~V~~~l~~~l~~~g~ev~~D~-------------------------------~Gnlia~~ 52 (343)
T TIGR03106 5 LTETLLALLAIPSPTGF-TDAVVRYVAERLEDLGIEYELTR-------------------------------RGAIRATL 52 (343)
T ss_pred HHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHHcCCeEEECC-------------------------------CeEEEEEE
Confidence 34455666555544333 55789999999999999876421 34788887
Q ss_pred cCCCCCCceeEEEEEEeccC
Q 006687 90 RAPRGDGKEAIVLVTPYNAV 109 (635)
Q Consensus 90 rApRgdgtEAiVL~ap~~~~ 109 (635)
+... +...++++++.|..
T Consensus 53 ~g~~--~~~~v~l~aHmDev 70 (343)
T TIGR03106 53 PGRE--ATPARAVVTHLDTL 70 (343)
T ss_pred CCCC--CCCeEEEEEeeccc
Confidence 5422 22478999888663
No 79
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=33.45 E-value=3.8e+02 Score=29.06 Aligned_cols=97 Identities=14% Similarity=0.232 Sum_probs=60.5
Q ss_pred ccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcCCCCCCceeEEEEEEec
Q 006687 28 TTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGDGKEAIVLVTPYN 107 (635)
Q Consensus 28 ~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrApRgdgtEAiVL~ap~~ 107 (635)
+.+.++||++.++++|-.|..+.|+.. .|+ + +..=.|+.+-+.. ...+-.|+...|+
T Consensus 71 ~~~vr~~i~~~l~~l~w~ve~~~f~~~----tp~--------------g--~~~f~nii~tl~~---~A~r~lVlachyd 127 (338)
T KOG3946|consen 71 SRQVRRFIIQHLRNLGWAVETDAFTDN----TPL--------------G--TRNFNNLIATLDP---NASRYLVLACHYD 127 (338)
T ss_pred cHHHHHHHHHHHHhcCceeeecccccc----Ccc--------------e--eeeeeeEEEecCC---Ccchheeeecccc
Confidence 667899999999999999999888753 121 1 2334566665544 4677899999997
Q ss_pred cCCCC-------CcchhhHHHHHHHHHHHhcCC--cccc---ceEEEeeCCC
Q 006687 108 AVKGG-------VRETLSLGIAYSVFSLLTRVT--WLAK---DIIWLVADSQ 147 (635)
Q Consensus 108 ~~~~~-------~~~~~~valaLaLa~y~~r~~--~wAK---DIIfl~~D~~ 147 (635)
+.--. .+.+..-|+.+-+|+.+.+.- --+| -+..||.|++
T Consensus 128 sk~~p~~~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFDGE 179 (338)
T KOG3946|consen 128 SKIFPGGMFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFDGE 179 (338)
T ss_pred cccCCCcceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEeccH
Confidence 74211 111223355666666553221 1122 3678889974
No 80
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=30.44 E-value=6.2e+02 Score=28.70 Aligned_cols=100 Identities=15% Similarity=0.150 Sum_probs=62.5
Q ss_pred chHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEEcCCCCC--CceeEEEEEEec
Q 006687 30 ESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGIIRAPRGD--GKEAIVLVTPYN 107 (635)
Q Consensus 30 ~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIlrApRgd--gtEAiVL~ap~~ 107 (635)
..++++.++-+++|+.+..=+.. .| .|.++=.=+|. .--+++|....|
T Consensus 49 a~~~Fl~~~a~~l~l~~~~i~~~----------------------------p~--~~~~l~T~~GS~P~L~silL~SH~D 98 (420)
T KOG2275|consen 49 ACADFLKKYAKSLGLTVQKIESE----------------------------PG--KYVLLYTWLGSDPELPSILLNSHTD 98 (420)
T ss_pred HHHHHHHHHHHhcCCceeEEEec----------------------------Cc--eeEEEEEeeCCCCCccceeeecccc
Confidence 78999999999999997322211 12 34444443332 345788877543
Q ss_pred cC---------------CCC----------CcchhhHHHHHHHHHHHhcCCccccceEEEe-eCCCCCCchhHHHHHH
Q 006687 108 AV---------------KGG----------VRETLSLGIAYSVFSLLTRVTWLAKDIIWLV-ADSQYGEYAPVAAWLR 159 (635)
Q Consensus 108 ~~---------------~~~----------~~~~~~valaLaLa~y~~r~~~wAKDIIfl~-~D~~~~~~~G~~AWL~ 159 (635)
.. ..+ +.-..+++..-|+-..+.+--=|.|+|..+| .|.+.++..||+-+.+
T Consensus 99 VVP~f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~g~kp~Rti~lsfvpDEEi~G~~Gm~~fa~ 176 (420)
T KOG2275|consen 99 VVPVFREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKASGFKPKRTIHLSFVPDEEIGGHIGMKEFAK 176 (420)
T ss_pred ccCCCcccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhcCCCcCceEEEEecCchhccCcchHHHHhh
Confidence 21 000 1112456666666555554333899999998 5777778999999987
No 81
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=30.42 E-value=9.8e+02 Score=28.39 Aligned_cols=33 Identities=9% Similarity=0.242 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006687 513 TISSFFIGLGLMSVINFATAEIGALLMVPMALM 545 (635)
Q Consensus 513 ~Ll~~~~~l~~la~lNFsLa~~~al~~vPl~l~ 545 (635)
.+..+++.++++++.|.=-+++.++++.++.++
T Consensus 104 ~~~~lAl~~all~lsHll~~ll~~l~~~~~lLi 136 (616)
T PF10131_consen 104 YWILLALSMALLALSHLLSTLLTGLALIVFLLI 136 (616)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344555566666666755555566666555543
No 82
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=25.52 E-value=1e+03 Score=27.22 Aligned_cols=198 Identities=13% Similarity=0.108 Sum_probs=105.7
Q ss_pred chHHHHHHHHHhcCCeeeeecc---ccCCccCCCccccCCCCCcccc-cCCccccccceEEEEEcCCCCCC--ceeEEEE
Q 006687 30 ESHGIIAKYMSNLGAQVNNHKF---HPQLNQFHPLHFFSGPDSGVMQ-ENSTRSLYGINTVGIIRAPRGDG--KEAIVLV 103 (635)
Q Consensus 30 ~~~~~i~~~l~~lGle~~~~~f---~~~~~~f~~l~f~~~~~~~~~~-~~~~~~~~G~NvygIlrApRgdg--tEAiVL~ 103 (635)
...+|+.++++++|.++..-.- ++++.+--|+|=--. ..+. ..+..+.-=.+=|-+..|-+.|| ||-..|+
T Consensus 43 rm~~~~~~~l~~lG~~~~l~dlg~q~~~~g~~v~lPpvvl---~~~Gsdp~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt 119 (473)
T KOG2276|consen 43 RMADWLRDYLTKLGAPLELVDLGYQSLPDGQIVPLPPVVL---GVLGSDPSKKTVLVYGHLDVQPANLEDGWNTDPFTLT 119 (473)
T ss_pred HHHHHHHHHHHHhCCceeeeecccCCCCCCcccccChhhh---hcccCCCCcceEEEEeeeeeeecCCCCCCcCCCeEEE
Confidence 3678999999999987554221 222222222220000 0000 11111222122344778888887 6666666
Q ss_pred EEe--ccCCCCCcchhhHHHHHHHHHHHhcCC-ccccceEEEeeCCCCCCchhHHHHHHhhcCCCCCCCCccccccccCC
Q 006687 104 TPY--NAVKGGVRETLSLGIAYSVFSLLTRVT-WLAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVG 180 (635)
Q Consensus 104 ap~--~~~~~~~~~~~~valaLaLa~y~~r~~-~wAKDIIfl~~D~~~~~~~G~~AWL~aYh~~~~~~~~~~~~~~~~~~ 180 (635)
.-= -.+++..++..-|...+...+++++.. =+--||.|+|--.++.+..|+..=+++|++--+++.+.+-.+..++-
T Consensus 120 ~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g~~lpvnv~f~~EgmEEsgS~~L~~l~~~~kD~~~~~vD~vciSdnyWl 199 (473)
T KOG2276|consen 120 EDDGKLFGRGATDDKGPVLSWIHAVKALQQLGIDLPVNVVFVFEGMEESGSEGLDELIEKEKDKFFKDVDFVCISDNYWL 199 (473)
T ss_pred EECCEEeccCcCCCCccchHHHHHHHHHHHhCccccceEEEEEEechhccCccHHHHHHHHhhhhhccCCEEEeeCceec
Confidence 532 113444556677888888888888654 55789999996555557889999999999864444444322211221
Q ss_pred CCCcccccccccccchheeeeeEEeecCCCCCcceEEEEeecCCCCCC---chhHHHHHHHHHh
Q 006687 181 NNNFESKISYGIRRSGTMAAALVLGVAYGNENEDTLGIYAEASNGQMP---NLDLINIVHYLAV 241 (635)
Q Consensus 181 ~~~~~~~~~~~~~raG~IqaAl~le~~~~~~~~~~l~I~~eG~NGqLP---NLDLiN~v~~ia~ 241 (635)
. .++.-...+--|.+-.-+.+|-++. .+ --|++|-.- =-||+-++..+..
T Consensus 200 g---~kkPcltyGlRG~~yf~i~v~g~~~--Dl------HSGvfGG~~hE~m~dL~~~ms~Lv~ 252 (473)
T KOG2276|consen 200 G---TKKPCLTYGLRGVIYFQIEVEGPSK--DL------HSGVFGGVVHEAMNDLVLVMSSLVD 252 (473)
T ss_pred c---CCCcccccccccceeEEEEEeeccc--cc------ccccccchhHHHHHHHHHHHHHhcC
Confidence 1 1111112233466666554443322 11 146777653 3455555544443
No 83
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=22.07 E-value=6.7e+02 Score=23.58 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 006687 507 ATLKSATISSFFIGLGLMSVINFATAEIGALLMVPMALMAHP 548 (635)
Q Consensus 507 ~~lk~~~Ll~~~~~l~~la~lNFsLa~~~al~~vPl~l~~~p 548 (635)
+.++.+.++..+..|.+++-+-+.=+.+.-++..|+.++..|
T Consensus 4 qvl~~~~~~~~gg~LL~LaGlTL~gtvigL~vatPLfvifSP 45 (118)
T PF01277_consen 4 QVLAVVTLLPAGGTLLVLAGLTLAGTVIGLAVATPLFVIFSP 45 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 578888888888888888877777555555566898876655
No 84
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=21.81 E-value=2.8e+02 Score=30.75 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhhcCCCCCccchHHHHHHHHHhcCCeeeeeccccCCccCCCccccCCCCCcccccCCccccccceEEEEE
Q 006687 10 ANKLIKELNNLHSNPLGATTESHGIIAKYMSNLGAQVNNHKFHPQLNQFHPLHFFSGPDSGVMQENSTRSLYGINTVGII 89 (635)
Q Consensus 10 a~~~~~ei~~l~~~~~~~~~~~~~~i~~~l~~lGle~~~~~f~~~~~~f~~l~f~~~~~~~~~~~~~~~~~~G~NvygIl 89 (635)
-.++++|+-.+.+-++. +.+.++++.++|++++-|+...+ =-|+++..
T Consensus 4 ~~~~LkeL~~~~gpsG~-E~eVr~~~~~el~~~~~ev~~D~-------------------------------lGnlia~~ 51 (355)
T COG1363 4 LLELLKELLEAPGPSGY-EEEVRDVLKEELEPLGDEVEVDR-------------------------------LGNLIAKK 51 (355)
T ss_pred HHHHHHHHHcCCCCCCc-HHHHHHHHHHHHHHhCCceEEcC-------------------------------CCcEEEEe
Confidence 34567777777655544 56899999999999999976443 12667777
Q ss_pred cCCCCCCceeEEEEEEecc
Q 006687 90 RAPRGDGKEAIVLVTPYNA 108 (635)
Q Consensus 90 rApRgdgtEAiVL~ap~~~ 108 (635)
+. .+|...+.++++-|.
T Consensus 52 ~g--~~g~~~imi~AHmDE 68 (355)
T COG1363 52 GG--KNGPPKVMIAAHMDE 68 (355)
T ss_pred cC--CCCCccEEEEeecce
Confidence 66 355566777776644
No 85
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=21.36 E-value=5e+02 Score=28.41 Aligned_cols=99 Identities=10% Similarity=0.071 Sum_probs=57.9
Q ss_pred cchhhHHHHHHHHHHHhcCCc-cccceEEEeeCCCCCCchhHHHHHHhhcCCCCCCCCccccccccCCCCCccccccccc
Q 006687 114 RETLSLGIAYSVFSLLTRVTW-LAKDIIWLVADSQYGEYAPVAAWLRDYHTPAFSNLDSLNTETCHVGNNNFESKISYGI 192 (635)
Q Consensus 114 ~~~~~valaLaLa~y~~r~~~-wAKDIIfl~~D~~~~~~~G~~AWL~aYh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (635)
++..|++.++.+++.+++... ..+|+.|+++-+++-+ .| -++.-.+ +
T Consensus 183 D~K~G~a~~l~~~~~l~~~~~~~~~~v~~~~t~qEEvG-~g-----aa~~i~p------------------------d-- 230 (343)
T TIGR03106 183 DDKAGVAALLAALKAIVEHKVPLPVDVHPLFTITEEVG-SG-----ASHALPP------------------------D-- 230 (343)
T ss_pred ccHHhHHHHHHHHHHHHhcCCCCCceEEEEEECCcccC-cc-----chhcccH------------------------h--
Confidence 446799999999999986554 5789999998543322 23 1221110 0
Q ss_pred ccchheeeeeEEeecCCCCCcce----EEEEeecCCCCCCchhHHHHHHHHHhhccCceeEEe
Q 006687 193 RRSGTMAAALVLGVAYGNENEDT----LGIYAEASNGQMPNLDLINIVHYLAVHRQGLRVKVE 251 (635)
Q Consensus 193 ~raG~IqaAl~le~~~~~~~~~~----l~I~~eG~NGqLPNLDLiN~v~~ia~~~~g~~v~l~ 251 (635)
+--+|++|.......... ..|. -...|-.+|-.+.+-+..+|+ +.|+++...
T Consensus 231 -----~a~~i~vd~~~~~p~~~~lg~Gp~i~-~~d~~~~~~~~l~~~l~~~A~-~~~Ip~Q~~ 286 (343)
T TIGR03106 231 -----VAELVSVDNGTVAPGQNSSEHGVTIA-MADSSGPFDYHLTRKLIRLCQ-DHGIPHRRD 286 (343)
T ss_pred -----hhccEEEEecccCCCCCcCCCCceEE-EecCCCCCCHHHHHHHHHHHH-HcCCCcEEE
Confidence 011244443321000000 1111 113388899999999999996 788988764
Done!