Query 006688
Match_columns 635
No_of_seqs 380 out of 2761
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 06:18:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006688.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006688hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pg4_A Acetyl-COA synthetase; 100.0 4.7E-73 1.6E-77 644.5 50.2 484 142-635 21-504 (652)
2 1ry2_A Acetyl-coenzyme A synth 100.0 3.9E-73 1.3E-77 645.6 48.2 497 129-635 11-513 (663)
3 2vsq_A Surfactin synthetase su 100.0 3.8E-68 1.3E-72 647.1 29.0 514 45-635 327-848 (1304)
4 3etc_A AMP-binding protein; ad 100.0 5.8E-62 2E-66 545.9 44.8 407 192-635 48-462 (580)
5 4dg8_A PA1221; ANL superfamily 100.0 1.7E-62 6E-67 553.5 34.2 371 201-635 28-406 (620)
6 3ni2_A 4-coumarate:COA ligase; 100.0 2.8E-61 9.7E-66 536.2 39.2 392 201-635 23-421 (536)
7 3g7s_A Long-chain-fatty-acid-- 100.0 3.2E-61 1.1E-65 537.3 37.1 397 201-635 20-426 (549)
8 3c5e_A Acyl-coenzyme A synthet 100.0 2.7E-60 9.1E-65 531.6 44.0 402 192-635 30-443 (570)
9 1mdb_A 2,3-dihydroxybenzoate-A 100.0 3.8E-61 1.3E-65 535.4 35.3 389 202-635 27-417 (539)
10 4fuq_A Malonyl COA synthetase; 100.0 1.7E-60 5.8E-65 525.7 38.4 382 204-635 4-386 (503)
11 3r44_A Fatty acyl COA syntheta 100.0 1.1E-60 3.9E-65 528.9 35.9 385 200-635 16-400 (517)
12 3tsy_A Fusion protein 4-coumar 100.0 1.4E-60 4.7E-65 566.6 38.8 450 126-635 9-468 (979)
13 3rg2_A Enterobactin synthase c 100.0 2E-60 6.8E-65 538.0 37.6 391 202-635 29-421 (617)
14 4gr5_A Non-ribosomal peptide s 100.0 2.1E-60 7.1E-65 533.1 36.4 373 201-635 76-456 (570)
15 3t5a_A Long-chain-fatty-acid-- 100.0 3.7E-61 1.3E-65 528.2 29.0 396 201-635 25-470 (480)
16 2v7b_A Benzoate-coenzyme A lig 100.0 8.7E-60 3E-64 523.6 39.0 394 198-635 22-416 (529)
17 3o83_A Peptide arylation enzym 100.0 2.3E-60 8E-65 529.7 34.2 392 202-635 32-426 (544)
18 3rix_A Luciferase, luciferin 4 100.0 4.9E-60 1.7E-64 528.0 36.1 396 201-635 21-426 (550)
19 1v25_A Long-chain-fatty-acid-C 100.0 9.8E-60 3.4E-64 524.3 36.5 391 202-635 20-422 (541)
20 1t5h_X 4-chlorobenzoyl COA lig 100.0 3.6E-59 1.2E-63 515.5 39.8 379 201-635 3-389 (504)
21 2d1s_A Luciferase, luciferin 4 100.0 3.1E-59 1E-63 521.0 39.5 391 201-635 26-428 (548)
22 1amu_A GRSA, gramicidin synthe 100.0 1.6E-59 5.4E-64 524.6 35.8 373 201-635 40-417 (563)
23 3fce_A D-alanine--poly(phospho 100.0 1E-59 3.6E-64 520.9 33.0 379 202-635 3-387 (512)
24 3ivr_A Putative long-chain-fat 100.0 5.6E-59 1.9E-63 514.6 37.9 377 202-635 8-385 (509)
25 3e7w_A D-alanine--poly(phospho 100.0 9.9E-59 3.4E-63 512.8 35.2 378 202-635 3-386 (511)
26 3l8c_A D-alanine--poly(phospho 100.0 1.3E-58 4.3E-63 513.4 35.0 379 202-635 6-390 (521)
27 3kxw_A Saframycin MX1 syntheta 100.0 1.8E-57 6E-62 512.0 35.1 396 201-635 12-446 (590)
28 3nyq_A Malonyl-COA ligase; A/B 100.0 5.8E-58 2E-62 505.6 27.4 367 199-635 21-392 (505)
29 3gqw_A Fatty acid AMP ligase; 100.0 5E-57 1.7E-61 506.8 33.5 391 201-635 22-449 (576)
30 3ite_A SIDN siderophore synthe 100.0 2E-56 6.8E-61 500.3 29.7 381 202-635 22-414 (562)
31 3ipl_A 2-succinylbenzoate--COA 100.0 3.5E-56 1.2E-60 491.3 28.9 382 202-635 3-385 (501)
32 3qov_A Phenylacetate-coenzyme 100.0 1.2E-32 4E-37 297.9 19.3 223 384-635 82-309 (436)
33 4gs5_A Acyl-COA synthetase (AM 100.0 2E-33 6.8E-38 295.5 12.6 203 386-635 36-238 (358)
34 2y27_A Phenylacetate-coenzyme 100.0 2E-31 6.8E-36 288.4 18.6 224 383-635 86-314 (437)
35 2y4o_A Phenylacetate-coenzyme 100.0 2.5E-31 8.6E-36 288.1 17.4 225 383-635 88-316 (443)
36 3hgu_A EHPF; phenazine, antibi 100.0 2.2E-31 7.4E-36 281.5 13.6 199 383-599 87-320 (369)
37 4eql_A 4-substituted benzoates 96.1 0.014 4.7E-07 63.7 9.3 29 384-412 90-119 (581)
38 4b2g_A GH3-1 auxin conjugating 95.2 0.057 1.9E-06 59.0 9.8 30 384-413 96-126 (609)
39 4epl_A Jasmonic acid-amido syn 94.7 0.093 3.2E-06 57.0 9.6 29 384-412 95-124 (581)
40 2jgp_A Tyrocidine synthetase 3 94.2 0.0031 1E-07 68.7 -3.6 57 104-163 460-517 (520)
41 1l5a_A Amide synthase, VIBH; n 92.0 0.0037 1.2E-07 66.2 -6.9 56 104-163 358-418 (436)
42 4hvm_A Tlmii; PSI-biology, mid 91.8 0.015 5E-07 62.8 -2.6 58 103-164 408-469 (493)
43 2xhg_A Tyrocidine synthetase A 90.0 0.028 9.6E-07 59.9 -2.5 54 103-159 406-460 (466)
44 2y27_A Phenylacetate-coenzyme 85.6 4.4 0.00015 42.2 11.4 99 214-313 88-191 (437)
45 2y4o_A Phenylacetate-coenzyme 85.2 4.7 0.00016 42.1 11.4 99 214-313 90-193 (443)
46 3qov_A Phenylacetate-coenzyme 84.0 5.8 0.0002 41.3 11.4 97 216-313 86-187 (436)
47 3rix_A Luciferase, luciferin 4 77.1 8.6 0.00029 41.4 10.1 103 386-498 34-139 (550)
48 3ivr_A Putative long-chain-fat 74.8 15 0.0005 39.0 11.1 97 385-496 19-118 (509)
49 3c5e_A Acyl-coenzyme A synthet 74.1 26 0.00089 37.8 13.0 104 385-497 56-162 (570)
50 1v25_A Long-chain-fatty-acid-C 73.7 29 0.00099 37.1 13.2 101 385-496 31-134 (541)
51 3g7s_A Long-chain-fatty-acid-- 73.6 40 0.0014 36.1 14.3 105 385-497 32-140 (549)
52 3t5a_A Long-chain-fatty-acid-- 67.6 39 0.0013 35.2 12.3 108 385-497 37-148 (480)
53 1ry2_A Acetyl-coenzyme A synth 62.9 31 0.001 38.1 10.7 98 385-490 95-195 (663)
54 1t5h_X 4-chlorobenzoyl COA lig 62.1 43 0.0015 35.3 11.4 98 385-495 15-117 (504)
55 1pg4_A Acetyl-COA synthetase; 61.3 30 0.001 38.1 10.2 96 385-489 89-187 (652)
56 3etc_A AMP-binding protein; ad 60.0 35 0.0012 36.9 10.4 95 385-489 69-166 (580)
57 1amu_A GRSA, gramicidin synthe 59.2 44 0.0015 35.9 10.9 96 385-495 52-150 (563)
58 3ni2_A 4-coumarate:COA ligase; 58.8 31 0.0011 36.8 9.6 98 385-495 35-135 (536)
59 3hgu_A EHPF; phenazine, antibi 58.8 24 0.00081 35.5 8.3 98 214-313 89-214 (369)
60 1q9j_A PAPA5, polyketide synth 58.7 1.6 5.3E-05 45.3 -0.9 48 104-159 371-420 (422)
61 4fuq_A Malonyl COA synthetase; 55.7 52 0.0018 34.7 10.6 94 386-491 14-110 (503)
62 3kxw_A Saframycin MX1 syntheta 55.6 62 0.0021 34.7 11.5 104 385-496 24-130 (590)
63 2d1s_A Luciferase, luciferin 4 51.8 45 0.0015 35.6 9.4 85 405-495 51-138 (548)
64 2v7b_A Benzoate-coenzyme A lig 51.5 45 0.0015 35.4 9.3 96 385-495 36-134 (529)
65 4gr5_A Non-ribosomal peptide s 51.0 64 0.0022 34.6 10.5 92 385-491 88-182 (570)
66 3r44_A Fatty acyl COA syntheta 47.3 57 0.002 34.5 9.3 96 385-493 29-127 (517)
67 3ipl_A 2-succinylbenzoate--COA 45.8 1.2E+02 0.0042 31.6 11.6 97 213-313 160-260 (501)
68 3isl_A Purine catabolism prote 43.9 1.7E+02 0.0058 29.2 12.1 72 254-326 83-158 (416)
69 3o83_A Peptide arylation enzym 43.3 1.3E+02 0.0044 31.9 11.4 96 214-313 189-290 (544)
70 1mdb_A 2,3-dihydroxybenzoate-A 40.6 1.6E+02 0.0054 31.1 11.6 96 214-313 180-281 (539)
71 3tbh_A O-acetyl serine sulfhyd 38.3 1E+02 0.0036 30.5 9.0 66 248-313 61-127 (334)
72 3tsy_A Fusion protein 4-coumar 36.4 96 0.0033 35.8 9.6 96 384-492 73-171 (979)
73 3ri6_A O-acetylhomoserine sulf 33.9 1.9E+02 0.0064 29.7 10.4 71 254-326 118-189 (430)
74 3fce_A D-alanine--poly(phospho 33.1 1.1E+02 0.0039 32.0 8.8 97 214-313 142-244 (512)
75 3ezx_A MMCP 1, monomethylamine 32.9 1.5E+02 0.0051 27.2 8.5 82 438-527 103-193 (215)
76 3ite_A SIDN siderophore synthe 31.5 2.5E+02 0.0086 29.6 11.4 97 385-489 33-134 (562)
77 3e7w_A D-alanine--poly(phospho 31.0 1.3E+02 0.0045 31.5 8.9 97 214-313 141-243 (511)
78 2e7j_A SEP-tRNA:Cys-tRNA synth 31.0 3.5E+02 0.012 26.2 11.8 69 254-325 90-168 (371)
79 3gqw_A Fatty acid AMP ligase; 30.8 1.7E+02 0.0057 31.1 9.8 89 404-495 47-142 (576)
80 3l8c_A D-alanine--poly(phospho 30.6 1E+02 0.0035 32.4 7.9 79 405-489 28-109 (521)
81 3kki_A CAI-1 autoinducer synth 28.0 2.8E+02 0.0097 27.6 10.6 70 254-327 140-209 (409)
82 3nnk_A Ureidoglycine-glyoxylat 27.2 4.6E+02 0.016 25.8 13.6 72 254-326 85-160 (411)
83 3rg2_A Enterobactin synthase c 27.1 1.7E+02 0.0057 31.6 9.0 89 386-489 39-130 (617)
84 1eg5_A Aminotransferase; PLP-d 26.6 3.1E+02 0.011 26.7 10.5 72 254-326 86-161 (384)
85 3a2b_A Serine palmitoyltransfe 26.1 4.8E+02 0.016 25.6 12.3 69 254-326 124-195 (398)
86 3vc3_A Beta-cyanoalnine syntha 25.4 2.3E+02 0.008 28.0 9.0 64 250-313 78-142 (344)
87 3ju7_A Putative PLP-dependent 25.3 1.5E+02 0.0051 29.7 7.7 61 248-311 69-136 (377)
88 3ndn_A O-succinylhomoserine su 24.7 3.8E+02 0.013 27.0 10.8 76 248-326 112-188 (414)
89 3l48_A Outer membrane usher pr 23.4 49 0.0017 26.2 2.7 29 569-599 19-49 (94)
90 2huf_A Alanine glyoxylate amin 22.8 5.4E+02 0.018 25.1 13.8 72 254-326 91-166 (393)
91 4hvk_A Probable cysteine desul 22.6 2.5E+02 0.0084 27.4 8.7 70 255-325 86-159 (382)
92 3nyq_A Malonyl-COA ligase; A/B 22.3 2.9E+02 0.0099 28.7 9.6 96 213-313 152-252 (505)
93 2bkw_A Alanine-glyoxylate amin 22.3 4.7E+02 0.016 25.3 10.9 71 255-326 84-159 (385)
94 1t90_A MMSDH, probable methylm 22.3 1.8E+02 0.0062 30.5 7.8 79 431-519 144-228 (486)
95 1elu_A L-cysteine/L-cystine C- 21.9 2.5E+02 0.0085 27.6 8.6 76 250-326 94-176 (390)
96 1o69_A Aminotransferase; struc 21.8 4.1E+02 0.014 26.3 10.3 61 249-312 64-130 (394)
97 4gs5_A Acyl-COA synthetase (AM 21.6 3.2E+02 0.011 26.9 9.3 92 215-312 36-131 (358)
98 4dg8_A PA1221; ANL superfamily 21.5 2.1E+02 0.007 31.0 8.3 89 385-488 40-131 (620)
99 1z7w_A Cysteine synthase; tran 21.1 3.2E+02 0.011 26.5 9.0 64 249-313 57-122 (322)
100 1t3i_A Probable cysteine desul 20.8 3.3E+02 0.011 26.9 9.4 72 254-326 115-191 (420)
101 4h1h_A LMO1638 protein; MCCF-l 20.7 2E+02 0.0068 28.4 7.3 64 253-316 8-90 (327)
102 3i16_A Aluminum resistance pro 20.6 2.5E+02 0.0086 28.8 8.3 59 254-312 112-184 (427)
103 3kgw_A Alanine-glyoxylate amin 20.6 5.9E+02 0.02 24.7 14.0 71 254-325 95-169 (393)
104 4e4g_A Methylmalonate-semialde 20.5 2E+02 0.0068 30.5 7.7 68 431-498 165-238 (521)
105 2z9v_A Aspartate aminotransfer 20.5 3.8E+02 0.013 26.2 9.7 71 254-325 80-155 (392)
106 4eez_A Alcohol dehydrogenase 1 20.4 2E+02 0.0068 28.2 7.4 62 248-312 155-216 (348)
107 1e5e_A MGL, methionine gamma-l 20.3 3.6E+02 0.012 27.0 9.5 71 254-326 98-169 (404)
No 1
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=4.7e-73 Score=644.47 Aligned_cols=484 Identities=52% Similarity=1.008 Sum_probs=404.0
Q ss_pred hHHHHHHHhhhccChhhHHHHHHhhcccccccccccccccccccCCCCccccCCCCcchHHHHHHhhhhhccCCCceEEE
Q 006688 142 PQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNCLDRNIEAGLGDKVAIY 221 (635)
Q Consensus 142 ~~~~~~ll~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~a~~~pd~~Al~ 221 (635)
.++|.++++++++||+.+|+++++.+.|.++++ +++..+. ....+..+||+++.+|+++++|+++ ++++|+++|++
T Consensus 21 ~~~y~~l~~~~~~~p~~~w~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~wf~~~~~n~~~~~l~~~-a~~~pd~~Al~ 96 (652)
T 1pg4_A 21 PEQYETKYKQSINDPDTFWGEQGKILDWITPYQ-KVKNTSF--APGNVSIKWYEDGTLNLAANCLDRH-LQENGDRTAII 96 (652)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHGGGSCCSBCCS-CCEEEEC--CTTCCEEEESTTCEECHHHHHTGGG-HHHHTTSEEEE
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHhhCceecCCc-ccccCcc--ccCCCCCEECCCCChhHHHHHHHHH-hccCCCceEEE
Confidence 468999999999999999999987789998876 4553221 0012256999999999999999999 78899999999
Q ss_pred EEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHH
Q 006688 222 WEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIM 301 (635)
Q Consensus 222 ~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~ 301 (635)
+.+++.+..+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++
T Consensus 97 ~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~ 176 (652)
T 1pg4_A 97 WEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCII 176 (652)
T ss_dssp EECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHH
T ss_pred EEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHH
Confidence 86543345689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCCcchhhhhcCcCCCCCCc
Q 006688 302 DCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEV 381 (635)
Q Consensus 302 ~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (635)
++++++||+++......+...++..+.++.... ....+++++.++.... ...+...+...|.+++.......+.
T Consensus 177 ~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vi~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (652)
T 1pg4_A 177 DSSSRLVITADEGVRAGRSIPLKKNVDDALKNP--NVTSVEHVIVLKRTGS----DIDWQEGRDLWWRDLIEKASPEHQP 250 (652)
T ss_dssp HHTCSEEEEESEEEETTEEEESHHHHHHHHTST--TCCSCCEEEEECSSCC----CCCCCBTTEEEHHHHHTTSCSCCCC
T ss_pred hcCCCEEEEcCccccCCcccchHHHHHHHHhcC--CcCCCCEEEEEeCCCC----cccccCCCceeHHHHHhhcCCCCCc
Confidence 999999999988776666666666666544321 0124567777654320 0111112234566665443332334
Q ss_pred ccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEe
Q 006688 382 EWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (635)
Q Consensus 382 ~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~ 461 (635)
....++|++||+|||||||+||||+++|++++.+........++++++|++++.+|++|+.++.+.++.+|++|+++++.
T Consensus 251 ~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~ 330 (652)
T 1pg4_A 251 EAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMF 330 (652)
T ss_dssp CCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEE
T ss_pred cccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEE
Confidence 45578999999999999999999999999987766555666789999999999999999999768899999999999999
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccc
Q 006688 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPIS 541 (635)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~ 541 (635)
++.+..+++..+++.|++++||+++++|++++.|++...+.....++++||.+++|||++++++++++.+.++..+++++
T Consensus 331 ~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~ 410 (652)
T 1pg4_A 331 EGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 410 (652)
T ss_dssp CSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEE
T ss_pred CCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEE
Confidence 87555469999999999999999999999999999875433345678999999999999999999999999875458899
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcC
Q 006688 542 DTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFK 621 (635)
Q Consensus 542 n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~ 621 (635)
|.||+||+++.++...+...+.+++++|+|++|++++|+|++|+++|.|+.|||+|+||+|++++|||++|++|.+.|+.
T Consensus 411 ~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~ 490 (652)
T 1pg4_A 411 DTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFS 490 (652)
T ss_dssp EEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHS
T ss_pred ccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhh
Confidence 99999999976665543333467789999999999999999999999999999999998889999999999999999987
Q ss_pred CCCceEEcCCeEec
Q 006688 622 PFPGYYFTGDGCSR 635 (635)
Q Consensus 622 ~~~g~yrTGDlgr~ 635 (635)
..+|||+|||+||+
T Consensus 491 ~~~g~y~TGDlg~~ 504 (652)
T 1pg4_A 491 TFKNMYFSGDGARR 504 (652)
T ss_dssp SSTTSEEEEEEEEE
T ss_pred cCCCEEECCcEEEE
Confidence 67899999999985
No 2
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=3.9e-73 Score=645.58 Aligned_cols=497 Identities=46% Similarity=0.860 Sum_probs=405.1
Q ss_pred CChhhhhccCCCChHHHHHHHhhhccChhhHHHHHHhh-ccccccccccccccccccc-CCCCccccCCCCcchHHHHHH
Q 006688 129 PSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASE-FYWKEKWGQRVCSENLDVR-KGNVKIEWFKGGITNICYNCL 206 (635)
Q Consensus 129 ~~~~f~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~-~~~~~~~w~~~~~~~~~~~~l 206 (635)
.+.+|....... ++.|.++++++++||+.+|+++++. +.|.++++ +++..+++.. ...+..+||+++.+|+++++|
T Consensus 11 ~~~~~~~~~~~~-~~~y~~~~~~s~~~~~~fw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l 88 (663)
T 1ry2_A 11 SSGLVPRGSHMG-LQDYQRLHKESIEDPAKFFGSKATQFLNWSKPFD-KVFIPDPKTGRPSFQNNAWFLNGQLNACYNCV 88 (663)
T ss_dssp --------------CHHHHHHHHHHHCHHHHHHHHHHHHCCEEECCS-CSBCBCSSSCSBCSTTCCBSTTCEECHHHHHT
T ss_pred cccccccccCCC-hhhHHHHHHHHhcCHHHHHHHHHhhcCeeecCCc-eeecCccccccCCCCCCCcCCCCCccHHHHHH
Confidence 345555544433 5789999999999999999999877 89999887 5664332100 011125999999999999999
Q ss_pred hhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEE
Q 006688 207 DRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLK-DIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHS 285 (635)
Q Consensus 207 ~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~-~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~v 285 (635)
+++ ++++|+++|+++.+++.+..+++||+||+++++++|+.|+ ++|+++||+|+|+++|++++++++|||+++|++++
T Consensus 89 ~~~-a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~v 167 (663)
T 1ry2_A 89 DRH-ALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHS 167 (663)
T ss_dssp HHH-HTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEE
T ss_pred HHH-hccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEE
Confidence 999 8899999999986543345689999999999999999999 99999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCCc
Q 006688 286 VVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRD 365 (635)
Q Consensus 286 pld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 365 (635)
|+++.++.+++.++++++++++||+++......+...++..++++.. ..+.++++++++..... ...+...+.
T Consensus 168 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~vi~~~~~~~~---~~~~~~~~~ 240 (663)
T 1ry2_A 168 VVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALR----ETPGVRHVLVYRKTNNP---SVAFHAPRD 240 (663)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTT----SCTTCCEEEEECSSCCS---SCCCCSSSE
T ss_pred eeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHH----hCCCCceEEEEecCCCC---ccccCCCcc
Confidence 99999999999999999999999999988777777777766655432 22456777777643200 011112233
Q ss_pred chhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchh
Q 006688 366 IWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHS 445 (635)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~ 445 (635)
..|.+++.......+.....++|++||+|||||||+||||+++|++++.+........++++++|++++.+|++|+.++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~ 320 (663)
T 1ry2_A 241 LDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHT 320 (663)
T ss_dssp EEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHH
T ss_pred ccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhH
Confidence 45666554433333344567899999999999999999999999998776656666679999999999999999999977
Q ss_pred HHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHH
Q 006688 446 YVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSA 525 (635)
Q Consensus 446 ~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l 525 (635)
+.++.+|+.|+++++.++.+..+++..+++.|++++||+++++|++++.|.+...+.....++++||.+++|||++++++
T Consensus 321 ~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~ 400 (663)
T 1ry2_A 321 YVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEV 400 (663)
T ss_dssp HTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHH
T ss_pred HHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHH
Confidence 88899999999999998765556999999999999999999999999999887543334567899999999999999999
Q ss_pred HHHHHHHhCCCCcccccccccccccccccccCC-CCCCCCCCCCCCCCCCCeEEEEcC-CCCccCC-CcceEEEEecCCC
Q 006688 526 WRWFFNVVGDSRCPISDTWWQTETGGFMITPLP-GAWPQKPGSATFPFFGVQPVIVDE-KGVEIEG-ECSGYLCIKSSWP 602 (635)
Q Consensus 526 ~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~-~~~~~~~~siG~pl~g~~v~IvD~-~g~~vp~-g~~GEL~i~g~~~ 602 (635)
++++.+.+|..+++++|.||+||+++.++...+ ...+.+++++|+|++|++++|+|+ +|++++. |+.|||+|+||+|
T Consensus 401 ~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p 480 (663)
T 1ry2_A 401 WEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWP 480 (663)
T ss_dssp HHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCT
T ss_pred HHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCC
Confidence 999999987545889999999999876655433 233567899999999999999998 9999998 9999999999888
Q ss_pred cchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 603 GAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 603 ~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
++++|||++|++|.+.|+...+|||+|||+|++
T Consensus 481 ~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~ 513 (663)
T 1ry2_A 481 SFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAK 513 (663)
T ss_dssp TSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEE
T ss_pred chhcccccChHHHHHhhhcCCCCEEEcCCEEEE
Confidence 999999999999999998767899999999985
No 3
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=3.8e-68 Score=647.07 Aligned_cols=514 Identities=17% Similarity=0.199 Sum_probs=395.3
Q ss_pred CCCCCCCCCccceeeecCCCceEEEeccCCCCCCCCCCCCC--CCCccccccccCCCCCCCCCcccchhhhhhcccCCcC
Q 006688 45 KPLNKSSSPPLKLIRQSGGGGAVVMASSGCNNNNGNNSKKM--KTESFLRHVESLASFPSGAGKISRLNAVILGEALSSE 122 (635)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~~~~~~~~ 122 (635)
+.+....-|+.+++|..+.+ .+|+..-.+.|........ ....... ..... ..+.++|||++.+.+++++.+.
T Consensus 327 ~a~~hq~~p~~~i~~~l~~~--~lf~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~--~~~~~~~dL~l~~~~~~~l~~~ 401 (1304)
T 2vsq_A 327 QSEPHQYVPLYDIQSQADQP--KLIDHIIVFENYPLQDAKNEESSENGFD-MVDVH--VFEKSNYDLNLMASPGDEMLIK 401 (1304)
T ss_dssp HHGGGTTSCHHHHHHSSSCS--SSCCCEEEECSSCHHHHSCCCHHHHSEE-EEEEE--ECCCCCSSEEEEEECSSSCEEE
T ss_pred HhhhcccCCHHHHHHHhCCC--cccceeEEEeecccccccccccccCCce-eEeee--cccccccCeEEEEecCCcEEEE
Confidence 45667788999999988732 2232222222221110000 0000000 00110 1246899999998876667777
Q ss_pred CCcccCCChhhhhccCCCChHHHHHHHhhhccChhhHHHHHHhhcccccccccccccccccccCCCCccccCCCCcchHH
Q 006688 123 ENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNIC 202 (635)
Q Consensus 123 ~~~~~y~~~~f~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 202 (635)
+.|++++|+++++++|+++|.++|++++++|+.+++++.. +...+.. +++ ..++....+ ++. .++
T Consensus 402 ---~~y~~~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~~~~-l~~~e~~--~~~-~~~~~~~~~-----~~~---~~l 466 (1304)
T 2vsq_A 402 ---LAYNENVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINL-VDDRERE--FLL-TGLNPPAQA-----HET---KPL 466 (1304)
T ss_dssp ---EEEETTTSCHHHHHHHHHHHHHHHHHHHHSTTSBGGGCCC-CCHHHHH--HHH-TTTSCCCCC-----CCC---CCH
T ss_pred ---EEECCccCCHHHHHHHHHHHHHHHHHhccCccccccccCC-CCHHHHH--HHH-HhcCCCCCC-----CCC---CCH
Confidence 9999999999999999999999999999999999988842 3322221 122 112222111 111 248
Q ss_pred HHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCC
Q 006688 203 YNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGA 282 (635)
Q Consensus 203 ~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga 282 (635)
+++|+++ ++++|+++|+++.+ +++||+||+++++++|+.|++.|+++|++|+|+++|++++++++|||+|+|+
T Consensus 467 ~~~~~~~-~~~~p~~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~lailkaG~ 539 (1304)
T 2vsq_A 467 TYWFKEA-VNANPDAPALTYSG------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGA 539 (1304)
T ss_dssp HHHHHHH-HHHCTTSEEEESSS------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHTTC
T ss_pred HHHHHHH-HHhCCCCeEEEECC------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHHHHHHCC
Confidence 9999999 89999999999644 7899999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCC
Q 006688 283 VHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQD 362 (635)
Q Consensus 283 ~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~ 362 (635)
+||||||.+|.+|+.++++++++++||++......... .+.....+.+++..
T Consensus 540 ~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~-----------------~~~~~~~~~~~~~~----------- 591 (1304)
T 2vsq_A 540 AYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE-----------------LPYTGTTLFIDDQT----------- 591 (1304)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT-----------------CCCCSEEEESSCGG-----------
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc-----------------cCCCCcEEEecccc-----------
Confidence 99999999999999999999999999998765321100 01122233332211
Q ss_pred CCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceec
Q 006688 363 GRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWIT 442 (635)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~ 442 (635)
.... ....+.....|+++|||+|||||||+||||+++|+++.+. .+....++++++|+++++++++|+.
T Consensus 592 -------~~~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~--~~~~~~~~~~~~d~~l~~~~~~fd~ 660 (1304)
T 2vsq_A 592 -------RFEE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL--VKHVDYMAFSDQDTFLSVSNYAFDA 660 (1304)
T ss_dssp -------GGGS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH--HSSCCSSCCCTTCEEEECSCTTSTH
T ss_pred -------cccc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH--HHHHHhcCCCCCCEEEEECCccHHH
Confidence 0000 1111223457899999999999999999999999996643 2333457889999999999999999
Q ss_pred chhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCC
Q 006688 443 GHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPIN 522 (635)
Q Consensus 443 g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~ 522 (635)
+ ++++|.+|+.|+++++.+.... +++..+.+.|++++||+++++|++++.|.+... ..+++||.+++|||+++
T Consensus 661 ~-~~~~~~~l~~G~~l~~~~~~~~-~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~-----~~~~~lr~~~~gGe~l~ 733 (1304)
T 2vsq_A 661 F-TFDFYASMLNAARLIIADEHTL-LDTERLTDLILQENVNVMFATTALFNLLTDAGE-----DWMKGLRCILFGGERAS 733 (1304)
T ss_dssp H-HHHHHHHHTTTCEEEECCGGGT-TCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS-----HHHHTCSEEEEESSCCC
T ss_pred H-HHHHHHHHHcCCEEEECChhhc-CCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch-----hcCCCccEEEEecCCCC
Confidence 7 5899999999999999886544 399999999999999999999999999987532 23578999999999999
Q ss_pred HHHHHHHHHHhCCCCcccccccccccccccccccCCCC--CCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecC
Q 006688 523 PSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA--WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (635)
Q Consensus 523 ~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~--~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~ 600 (635)
++++++|.+.++ +.+++|.||+||++++++...... ......++|+|++|++++|+|++++++|.|++|||||+|
T Consensus 734 ~~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G- 810 (1304)
T 2vsq_A 734 VPHVRKALRIMG--PGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISG- 810 (1304)
T ss_dssp HHHHHHHHHHHC--TTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCCEEEEEEE-
T ss_pred HHHHHHHHHhCC--CCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCceEEEEec-
Confidence 999999999987 478999999999998765542211 123457899999999999999999999999999999999
Q ss_pred CCcchhhhcCChhHHHHhhcC----CCCceEEcCCeEec
Q 006688 601 WPGAFRTLYGDHERYETTYFK----PFPGYYFTGDGCSR 635 (635)
Q Consensus 601 ~~~v~~GY~~~~e~t~~~~~~----~~~g~yrTGDlgr~ 635 (635)
+++++||+|+|+.|++.|.. +.++||||||+|||
T Consensus 811 -~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~ 848 (1304)
T 2vsq_A 811 -MGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARW 848 (1304)
T ss_dssp -TTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEE
T ss_pred -cccCccccCCcccchhhhccCCCCCCCeeEecCCeEEE
Confidence 99999999999999999864 23459999999986
No 4
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=5.8e-62 Score=545.90 Aligned_cols=407 Identities=24% Similarity=0.310 Sum_probs=329.3
Q ss_pred ccCCCCcchHHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHH
Q 006688 192 EWFKGGITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELP 271 (635)
Q Consensus 192 ~w~~~~~~~~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~i 271 (635)
+|......|+++++|+++ |+++|+++|+++.+++ +..+++||+||+++++++|+.|+++|+++||+|+|+++|+++++
T Consensus 48 ~~~~~~~~n~~~~~l~~~-a~~~pd~~Al~~~~~~-g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~ 125 (580)
T 3etc_A 48 KILVPENFNFAYDVVDVY-ARDSPEKLAMIWCDDY-GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFW 125 (580)
T ss_dssp CBCCCSSCCHHHHTHHHH-HHHCTTCEEEEEEESS-SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHH
T ss_pred CCCCcccchHHHHHHHHH-HhhCCCCEEEEEEcCC-CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH
Confidence 344444567889999999 8999999999986543 45689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCc-cEEEEecCC
Q 006688 272 IAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV-DVCLTYENQ 350 (635)
Q Consensus 272 va~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vi~~~~~ 350 (635)
+++|||+++|++++|++|.++.+++.++++++++++||++.... ....+......+ +.+ ..++.++..
T Consensus 126 ~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~-------~~~~~~~~~~~~----~~~~~~~~~~~~~ 194 (580)
T 3etc_A 126 YCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD-------VPEQVDEAHAEC----GDIPLKKAKVGGD 194 (580)
T ss_dssp HHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT-------HHHHHHHHHHHH----CSCCCEEEEESSS
T ss_pred HHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh-------HHHHHHHHhhhC----CCcceEEEEeCCc
Confidence 99999999999999999999999999999999999999987642 112223322221 333 344544432
Q ss_pred ccccccccccCCCCcchhhhhcCcCCCCC--C--cccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCC
Q 006688 351 SAMTRENTKWQDGRDIWWQDVVPKYPTKC--E--VEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDY 426 (635)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~ 426 (635)
.. .....+.+.+....... + .....++|+|||+|||||||.||||+++|.+++.+. ......+++
T Consensus 195 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~-~~~~~~~~~ 263 (580)
T 3etc_A 195 VL----------EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHI-LTAKYWQNV 263 (580)
T ss_dssp CC----------TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHH-HHHHTTSCC
T ss_pred cc----------cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHH-HHHHHhhCC
Confidence 10 01122333322221111 1 134678999999999999999999999999866554 334445788
Q ss_pred CCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccC
Q 006688 427 KPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRY 506 (635)
Q Consensus 427 ~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~ 506 (635)
.+++++++.++++|+.++...++.++..|+++++.+.. .+++..+++.|++++||+++++|++++.|++... ...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~--~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~ 338 (580)
T 3etc_A 264 EDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYD--RFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDL---SHY 338 (580)
T ss_dssp CTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECS--SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC------
T ss_pred CCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCC--CCCHHHHHHHHHHHCCeEEEccHHHHHHHHhccc---ccC
Confidence 99999999999999988655688899999999998632 2599999999999999999999999999988632 456
Q ss_pred CCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCc
Q 006688 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVE 586 (635)
Q Consensus 507 ~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~ 586 (635)
++++||.+++|||+++++++++|.+.++ ++++|.||+||+++.++.... ...+++++|+|+||++++|+|++|++
T Consensus 339 ~l~~lr~i~~gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~~~~~~--~~~~~~~~G~p~~~~~v~ivd~~g~~ 413 (580)
T 3etc_A 339 NFSTLKYAVVAGEPLNPEVFNRFLEFTG---IKLMEGFGQTETVVTIATFPW--MEPKPGSIGKPTPGYKIELMDRDGRL 413 (580)
T ss_dssp CCTTCCEEEECSSCCCHHHHHHHHHHHS---CCCEEEECCTTSSCCEECCTT--SCCCTTCCBEECTTCEEEEECTTSCB
T ss_pred CCccceEEEEccCCCCHHHHHHHHHHhC---CeEecccccccccceeecCCC--CCCCCCccccCCCCCEEEEECCCCCC
Confidence 7899999999999999999999999887 789999999999876554322 23577899999999999999999999
Q ss_pred cCCCcceEEEEecC---CCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 587 IEGECSGYLCIKSS---WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 587 vp~g~~GEL~i~g~---~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+|+|+.|||+|+|+ .+++++||+++|+.|.+.|. +|||||||+|++
T Consensus 414 ~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~---~gwy~TGDlg~~ 462 (580)
T 3etc_A 414 CEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWH---DGYYHTGDMAWM 462 (580)
T ss_dssp CCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEE---TTEEEEEEEEEE
T ss_pred CCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcC---CCEEecCcEEEE
Confidence 99999999999962 25799999999999999874 799999999985
No 5
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.7e-62 Score=553.48 Aligned_cols=371 Identities=17% Similarity=0.196 Sum_probs=309.9
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
+++++|+++ ++++|+++|+++.+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+|+
T Consensus 28 tl~~~~~~~-a~~~Pd~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailka 100 (620)
T 4dg8_A 28 TVVARFSEM-AALHPHREAIRDRF------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLS 100 (620)
T ss_dssp CHHHHHHHH-HHHCTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHT
T ss_pred CHHHHHHHH-HHhCCCCeEEEcCC------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 488999999 89999999999754 78999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++||||||.+|.+++.++++++++++||+++...... .... .+.+..
T Consensus 101 Ga~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------------------~~~~-~~~~~~----------- 148 (620)
T 4dg8_A 101 GHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------------------NGLP-CVPVRH----------- 148 (620)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------------------TTSC-EEEGGG-----------
T ss_pred CCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------------------cCCc-eeeecc-----------
Confidence 99999999999999999999999999999765532110 0111 111110
Q ss_pred CCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
. .............++|+|||+|||||||.||||+++|+++.+.. .. ...+++.++|++++.+|++|
T Consensus 149 ----------~-~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~-~~-~~~~~~~~~d~~l~~~p~~~ 215 (620)
T 4dg8_A 149 ----------L-PAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLC-LG-QSFLAFAPQMRFLVNSPLSF 215 (620)
T ss_dssp ----------C-CCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHH-SS-CGGGTTCTTCEEEECSCTTS
T ss_pred ----------C-CcCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHH-HH-HHhhCCCCCCEEEEECccCH
Confidence 0 00111112233568999999999999999999999999965543 32 34678999999999999999
Q ss_pred ecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 441 ~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
+.+ ++++|.+|+.|+++++.+.. . +++..+++.|+++++|+++++|++++.|++.. ...+++||.+++|||+
T Consensus 216 ~~~-~~~~~~~l~~G~~~v~~~~~-~-~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~-----~~~l~~lr~v~~gGe~ 287 (620)
T 4dg8_A 216 DAA-TLEIWGALLNGGCCVLNDLG-P-LDPGVLRQLIGERGADSAWLTASLFNTLVDLD-----PDCLGGLRQLLTGGDI 287 (620)
T ss_dssp THH-HHHHHHHHTTTCEEEECCSS-S-CCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC-----GGGGTTCSEEEEESSC
T ss_pred HHH-HHHHHHHHhcCCEEEeCccc-c-CCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC-----hhhCCCccEEEEEeCc
Confidence 998 47899999999999997432 2 59999999999999999999999999998753 3357899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccC--CCCCCCCCCCCCCCCCCCeEEEEcCCCCc-cCCCcceEEEE
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL--PGAWPQKPGSATFPFFGVQPVIVDEKGVE-IEGECSGYLCI 597 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~--~~~~~~~~~siG~pl~g~~v~IvD~~g~~-vp~g~~GEL~i 597 (635)
+++++++++.+.++ +++++|.||+||++++++... .........++|+|++|++++|+|+++++ +|+|++|||+|
T Consensus 288 l~~~~~~~~~~~~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i 365 (620)
T 4dg8_A 288 LSVPHVRRALLRHP--RLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVA 365 (620)
T ss_dssp CCHHHHHHHHHHCT--TCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEE
T ss_pred CCHHHHHHHHHhCC--CeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEE
Confidence 99999999988876 589999999999997765431 11223456789999999999999999988 78999999999
Q ss_pred ecCCCcchhhhcCChhHHHHhhcCCC---C--ceEEcCCeEec
Q 006688 598 KSSWPGAFRTLYGDHERYETTYFKPF---P--GYYFTGDGCSR 635 (635)
Q Consensus 598 ~g~~~~v~~GY~~~~e~t~~~~~~~~---~--g~yrTGDlgr~ 635 (635)
+| +++++||+|+|+.|.+.|.... . +||||||+||+
T Consensus 366 ~G--~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~ 406 (620)
T 4dg8_A 366 FG--AGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARY 406 (620)
T ss_dssp EE--TTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEE
T ss_pred ec--cccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEE
Confidence 99 9999999999999999986421 1 69999999986
No 6
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=2.8e-61 Score=536.23 Aligned_cols=392 Identities=21% Similarity=0.296 Sum_probs=323.9
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++|+++ ++++|+++|+++.. .++++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++
T Consensus 23 ~l~~~l~~~-a~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~ 97 (536)
T 3ni2_A 23 PLHSYVLEN-LSNHSSKPCLINGA----NGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHR 97 (536)
T ss_dssp CHHHHHTTT-GGGSTTSEEEEETT----TCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-hhcCCCceEEEECC----CCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHh
Confidence 378999998 89999999999753 2378999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|++|.++.+++.+++++++++++|++.... +.+....... .+ .++.++...
T Consensus 98 Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~---------~~~~~~~~~~-----~~-~~~~~~~~~--------- 153 (536)
T 3ni2_A 98 GAIITAANPFSTPAELAKHAKASRAKLLITQACYY---------EKVKDFARES-----DV-KVMCVDSAP--------- 153 (536)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGT---------HHHHHHHHHH-----TC-EEEESSCCC---------
T ss_pred CCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHH---------HHHHHHHhhc-----Cc-eEEEecCCC---------
Confidence 99999999999999999999999999999987642 1222222111 22 244443221
Q ss_pred CCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHH---HhcCCCCCcEEEEeCC
Q 006688 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK---YAFDYKPSDVYWCTAD 437 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~d~~l~~~~ 437 (635)
.....+.++........+.....++|+|||+|||||||.||||+++|++++.+...... ..+++.++|++++.+|
T Consensus 154 --~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p 231 (536)
T 3ni2_A 154 --DGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLP 231 (536)
T ss_dssp --TTCEETHHHHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSC
T ss_pred --CCccCHHHHhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecC
Confidence 01122333333222223344567899999999999999999999999997765543321 1356789999999999
Q ss_pred cceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEec
Q 006688 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517 (635)
Q Consensus 438 l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~g 517 (635)
++|+.++...++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|++... ....++++||.+++|
T Consensus 232 ~~h~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~g 305 (536)
T 3ni2_A 232 MFHIYALNSIMLCGLRVGAPILIMPK----FEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPD--LDKHDLSSLRMIKSG 305 (536)
T ss_dssp TTSHHHHHHTHHHHHHHTCCEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSC--GGGSCCTTCCEEEEE
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEcCC----CCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcc--cccCCCccceEEEEC
Confidence 99999977778899999999999875 599999999999999999999999999998764 345678999999999
Q ss_pred CCCCCHHHHHHHHHHhCCCCccccccccccccccccccc---CCCCCCCCCCCCCCCCCCCeEEEEc-CCCCccCCCcce
Q 006688 518 GEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITP---LPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSG 593 (635)
Q Consensus 518 Ge~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~---~~~~~~~~~~siG~pl~g~~v~IvD-~~g~~vp~g~~G 593 (635)
||++++++.++|.+.++ +++++|.||+||++.+++.. .......+++++|+|++|++++|+| ++++++|.|++|
T Consensus 306 Ge~l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~G 383 (536)
T 3ni2_A 306 GAPLGKELEDTVRAKFP--QARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPG 383 (536)
T ss_dssp SSCCCHHHHHHHHHHCT--TSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCE
T ss_pred CCCCCHHHHHHHHHHCC--CCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCcc
Confidence 99999999999999996 48999999999998664432 1222345678999999999999999 679999999999
Q ss_pred EEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 594 YLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 594 EL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
||+|+| +++++|||++|+.|.+.|.. +|||||||+|++
T Consensus 384 El~v~g--~~v~~GY~~~p~~t~~~~~~--~g~~~TGDl~~~ 421 (536)
T 3ni2_A 384 EICIRG--DQIMKGYLNDPEATSRTIDK--EGWLHTGDIGYI 421 (536)
T ss_dssp EEEEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEE
T ss_pred EEEEeC--cccchhhcCChhHHHhhccC--CCceEcccEEEE
Confidence 999999 99999999999999988753 889999999985
No 7
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=3.2e-61 Score=537.34 Aligned_cols=397 Identities=18% Similarity=0.241 Sum_probs=325.1
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCC--CCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHH
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEAND--PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACA 278 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~--~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l 278 (635)
++.++|+++ ++++|+++|+++.+.. .+..+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+
T Consensus 20 ~l~~~l~~~-a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 98 (549)
T 3g7s_A 20 SLADRIDAA-AEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALW 98 (549)
T ss_dssp CTTHHHHHH-HHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHH-HHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Confidence 368899998 8999999999987631 1234789999999999999999999999999999999999999999999999
Q ss_pred HhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccc
Q 006688 279 RIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENT 358 (635)
Q Consensus 279 ~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~ 358 (635)
++|++++||||.++.+++.++++++++++||++.... ..+...... ..+..++..+..
T Consensus 99 ~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~-------- 156 (549)
T 3g7s_A 99 RVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLY---------ENFKPVLEK-----TGVERVFVVGGE-------- 156 (549)
T ss_dssp HTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGH---------HHHHHHHTT-----SCCCEEEEETCS--------
T ss_pred HhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHH---------HHHHHHHhh-----CCCcEEEEeCCC--------
Confidence 9999999999999999999999999999999987642 122222111 234555554421
Q ss_pred ccCCCCcchhhhhcCcCCCCCCcccCCC-CCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 006688 359 KWQDGRDIWWQDVVPKYPTKCEVEWVDA-EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD 437 (635)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~ 437 (635)
...+.+.........+.....+ +|+|||+|||||||.||||+++|++++.+.. .....++++++|++++.+|
T Consensus 157 ------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~~~~~p 229 (549)
T 3g7s_A 157 ------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANAL-QLAVATGLSHMDTIVGCMP 229 (549)
T ss_dssp ------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHH-HHHHHHCCCTTCEEECCSC
T ss_pred ------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHH-HHHHHcCCCCCCEEEEeCc
Confidence 1223333322222222223334 8999999999999999999999999776654 4455789999999999999
Q ss_pred cceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEec
Q 006688 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSV 517 (635)
Q Consensus 438 l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~g 517 (635)
++|+.++.. ++.++..|+++++.+. +++..+++.|+++++|+++++|+++..|++.........++++||.+++|
T Consensus 230 ~~~~~~~~~-~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~g 304 (549)
T 3g7s_A 230 MFHSAEFGL-VNLMVTVGNEYVVMGM----FNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATG 304 (549)
T ss_dssp TTSHHHHHH-HTTHHHHCCEEEEESS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEE
T ss_pred HHHHHHHHH-HHHHHhcCceEEEcCC----CCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeC
Confidence 999998654 7889999999999874 59999999999999999999999999998865422223578999999999
Q ss_pred CCCCCHHHHHHHHHH----hCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEc-CCCCccCCCcc
Q 006688 518 GEPINPSAWRWFFNV----VGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECS 592 (635)
Q Consensus 518 Ge~l~~~l~~~~~~~----~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD-~~g~~vp~g~~ 592 (635)
||++++++.+++.+. ++.++++++|.||+||++.+++...... ..+..++|+|++|++++|+| ++++++|.|+.
T Consensus 305 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~ 383 (549)
T 3g7s_A 305 AWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLR-LDKSTTQGVPMSDIELKVISLEDGRELGVGES 383 (549)
T ss_dssp SSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGG-GGGTTSCCEECTTCEEEEECSSSCCEECTTCC
T ss_pred CccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccc-cCcCCCccccCCCCEEEEEeCCCCcCCCCCCc
Confidence 999999999999887 5544588999999999998766543321 24678899999999999999 89999999999
Q ss_pred eEEEEecCCCcchhhhcCChhHHHHhhcCCCCc--eEEcCCeEec
Q 006688 593 GYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG--YYFTGDGCSR 635 (635)
Q Consensus 593 GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g--~yrTGDlgr~ 635 (635)
|||+|+| |++++|||++|+.|.+.|+.+.+| ||||||+|++
T Consensus 384 GEl~v~g--~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~ 426 (549)
T 3g7s_A 384 GEIVIRG--PNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFI 426 (549)
T ss_dssp EEEEEES--TTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEE
T ss_pred eEEEEEC--cchhhhhCCChhhhhhhhhccCCCCceEccCcEEEE
Confidence 9999999 999999999999999998644466 9999999985
No 8
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=2.7e-60 Score=531.61 Aligned_cols=402 Identities=21% Similarity=0.279 Sum_probs=329.2
Q ss_pred ccCCCCcchHHHHHHhhhhhcc-----CCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcC
Q 006688 192 EWFKGGITNICYNCLDRNIEAG-----LGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLP 265 (635)
Q Consensus 192 ~w~~~~~~~~~~~~l~~~~a~~-----~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-Gv~~gd~Vai~~~ 265 (635)
.|+.....+++.++|+++ +++ +|+++|+++.+.+ +..+++||+||+++++++|+.|++. |+++||+|+|+++
T Consensus 30 ~~~~~~~~~~~~~~l~~~-a~~~~a~~~p~~~al~~~~~~-g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~ 107 (570)
T 3c5e_A 30 HQEVPAKFNFASDVLDHW-ADMEKAGKRPPSPALWWVNGK-GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLP 107 (570)
T ss_dssp BCCCCSBCCHHHHTHHHH-HHHHHTTSSCCCEEEEEECSS-SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECC
T ss_pred cccCCccccHHHHHHHHH-HhhccccCCCCceEEEEEcCC-CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcC
Confidence 566666678889999998 787 9999999986422 2357899999999999999999998 9999999999999
Q ss_pred CCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEE
Q 006688 266 MLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCL 345 (635)
Q Consensus 266 ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 345 (635)
|++++++++|||+++|++++|++|.++.+++.++++++++++||+++... ..+. ......+.++.++
T Consensus 108 n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~----~~~~~~~~~~~~~ 174 (570)
T 3c5e_A 108 RVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVI---------QEVD----TVASECPSLRIKL 174 (570)
T ss_dssp SCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTH---------HHHH----HHGGGCTTCCEEE
T ss_pred CCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHH---------HHHH----HHhhcCCceeEEE
Confidence 99999999999999999999999999999999999999999999987642 1111 1122234555666
Q ss_pred EecCCccccccccccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHH-HHHHHHHhc
Q 006688 346 TYENQSAMTRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVH-TATTFKYAF 424 (635)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~-~~~~~~~~~ 424 (635)
.++.... .....+.+++.......+.....++|+|||+|||||||.||||+++|+ ++.+ ..... ..+
T Consensus 175 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~ 242 (570)
T 3c5e_A 175 LVSEKSC----------DGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT 242 (570)
T ss_dssp EESSSCC----------TTSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT
T ss_pred EecccCc----------cccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc
Confidence 5543110 001123333322222222234568999999999999999999999999 4542 22333 567
Q ss_pred CCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccc
Q 006688 425 DYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVT 504 (635)
Q Consensus 425 ~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~ 504 (635)
+++++|++++.+|++|+.++...++.+|..|+++++.+.. . +++..+++.|+++++|+++++|++++.|++.. ..
T Consensus 243 ~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~-~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---~~ 317 (570)
T 3c5e_A 243 GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLP-K-FDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD---LS 317 (570)
T ss_dssp SCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCS-S-CCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC---TT
T ss_pred CCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCC-C-CCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc---cc
Confidence 8899999999999999998766789999999999998742 2 59999999999999999999999999998763 23
Q ss_pred cCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCC
Q 006688 505 RYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG 584 (635)
Q Consensus 505 ~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g 584 (635)
..++++||.+++|||+++++++++|.+.++ ++++|.||+||++..++.... ...+++++|+|++|++++|+|+++
T Consensus 318 ~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~~~~~v~i~d~~g 392 (570)
T 3c5e_A 318 SYKFPHLQNCVTVGESLLPETLENWRAQTG---LDIRESYGQTETGLTCMVSKT--MKIKPGYMGTAASCYDVQIIDDKG 392 (570)
T ss_dssp TCCCTTCCEEEEESSCCCHHHHHHHHHHHS---CCCEEEEEETTTEEEEECCTT--SCCCTTCCCEECTTCCEEEECTTS
T ss_pred ccccccceEEEEcCCcCCHHHHHHHHHHhC---CchhhccchhhcccceecCcc--cccCCCcccccCCCceEEEECCCC
Confidence 456889999999999999999999999887 789999999999866544322 235678999999999999999999
Q ss_pred CccCCCcceEEEEe-----cCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 585 VEIEGECSGYLCIK-----SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 585 ~~vp~g~~GEL~i~-----g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+++|.|+.|||+|+ | +++++|||++|+.|.+.|. +|||+|||+|++
T Consensus 393 ~~~~~G~~GEl~v~~~~~~g--~~v~~GY~~~~~~t~~~f~---~~~~~TGDlg~~ 443 (570)
T 3c5e_A 393 NVLPPGTEGDIGIRVKPIRP--IGIFSGYVDNPDKTAANIR---GDFWLLGDRGIK 443 (570)
T ss_dssp CBCCTTCCEEEEEECSSBCC--TTCCCEETTCHHHHHHTEE---TTEEEEEEEEEE
T ss_pred CCCCCCCCCeeEEeccCCCC--chhhccccCChhHhhhhhc---CCccccceeEEE
Confidence 99999999999999 8 8999999999999999874 789999999985
No 9
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=3.8e-61 Score=535.39 Aligned_cols=389 Identities=19% Similarity=0.227 Sum_probs=317.6
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.++|+++ ++++|+++|+++.+ +++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 27 l~~~l~~~-a~~~p~~~A~~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 99 (539)
T 1mdb_A 27 FGDLLRDR-AAKYGDRIAITCGN------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLG 99 (539)
T ss_dssp HHHHHHHH-HHHHTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HHHCCCCEEEEeCC------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcC
Confidence 78999998 89999999999643 789999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|++|.++.+++.+++++++++++|+++.... ........... ...+.++.++..+...
T Consensus 100 a~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~~~~~---------- 161 (539)
T 1mdb_A 100 ALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSG----FDYRSLARQVQ----SKLPTLKNIIVAGEAE---------- 161 (539)
T ss_dssp CEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETT----EEHHHHHHHHH----HHCTTCCCEEEESCCT----------
T ss_pred eEEecCCCCCCHHHHHHHHHhCCCCEEEecccccc----ccHHHHHHHHH----hcCCCccEEEEcCCcc----------
Confidence 99999999999999999999999999999875421 01111222221 1224455555443211
Q ss_pred CCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCccee
Q 006688 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~ 441 (635)
.+.++..............++|+|||+|||||||.||||+++|++++.+.. .....++++++|++++.+|++|+
T Consensus 162 -----~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~-~~~~~~~~~~~d~~l~~~p~~h~ 235 (539)
T 1mdb_A 162 -----EFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLK-RSVEVCWLDHSTVYLAALPMAHN 235 (539)
T ss_dssp -----TSEEGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHH-HHHHHHTCCTTCEEEECSCTTSH
T ss_pred -----chhhhhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHH-HHHHhhCCCCCCEEEEeeccccc
Confidence 011111111111122345789999999999999999999999999776554 44456889999999999999999
Q ss_pred cchhH-HhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 442 TGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 442 ~g~~~-~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
+++.. .++.+|+.|+++++.+. +++..+++.|+++++|+++++|+++..|++... ....++++||.+++|||+
T Consensus 236 ~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~~~~gG~~ 309 (539)
T 1mdb_A 236 YPLSSPGVLGVLYAGGRVVLSPS----PSPDDAFPLIEREKVTITALVPPLAMVWMDAAS--SRRDDLSSLQVLQVGGAK 309 (539)
T ss_dssp HHHHSSHHHHHHHTTCEEEECSS----SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHH--HCCCCCTTCCEEEEESSC
T ss_pred chhhHHHHHHHHHhCCEEEECCC----CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcc--ccCCCccceeEEEEcCCC
Confidence 98654 68999999999999865 599999999999999999999999999987643 234578999999999999
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCC-eEEEEcCCCCccCCCcceEEEEec
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGV-QPVIVDEKGVEIEGECSGYLCIKS 599 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~-~v~IvD~~g~~vp~g~~GEL~i~g 599 (635)
+++++.++|.+.++ ++++|.||+||+++.++.. ........+++|+|+++. +++|+|++++++|.|++|||+|+|
T Consensus 310 l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~-~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g 385 (539)
T 1mdb_A 310 FSAEAARRVKAVFG---CTLQQVFGMAEGLVNYTRL-DDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRG 385 (539)
T ss_dssp CCHHHHTTHHHHTC---SEEEEEEECTTSCEEECCT-TSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEEC
T ss_pred CCHHHHHHHHHHhC---CcEEEEEcCCCCcccccCC-CCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCcceEEeeC
Confidence 99999999999887 7899999999976443321 111112446899999765 799999999999999999999999
Q ss_pred CCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 600 ~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
|++++|||++|+.|.+.|.. +|||||||+|++
T Consensus 386 --~~v~~GY~~~~~~t~~~f~~--~g~~~TGDlg~~ 417 (539)
T 1mdb_A 386 --PYTIRGYYKAEEHNAASFTE--DGFYRTGDIVRL 417 (539)
T ss_dssp --TTSCSSCTTCHHHHHHHBCT--TSCEEEEEEEEE
T ss_pred --cccchhhcCChhhhhhhccC--CCCeecCceEEE
Confidence 99999999999999999864 799999999985
No 10
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.7e-60 Score=525.69 Aligned_cols=382 Identities=21% Similarity=0.291 Sum_probs=312.7
Q ss_pred HHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCe
Q 006688 204 NCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAV 283 (635)
Q Consensus 204 ~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~ 283 (635)
++|+++ ++++|+++|+.... ..++++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++
T Consensus 4 ~l~~~~-a~~~p~~~a~~~~~---~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 79 (503)
T 4fuq_A 4 NLFARL-FDKLDDPHKLAIET---AAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGV 79 (503)
T ss_dssp CHHHHH-HSCCSCTTSEEEEE---TTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCE
T ss_pred hHHHHH-HHhCCCCceEEEec---CCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcE
Confidence 467777 78899999988643 22478999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCC
Q 006688 284 HSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDG 363 (635)
Q Consensus 284 ~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~ 363 (635)
++|++|.++.+++.++++++++++||++...... + ....... . ..++.++...
T Consensus 80 ~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~-----~----~~~~~~~-----~-~~~~~~~~~~------------ 132 (503)
T 4fuq_A 80 YLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDG-----I----AAIAAKV-----G-ATVETLGPDG------------ 132 (503)
T ss_dssp EEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTT-----T----HHHHHHH-----T-CEEEECCTTS------------
T ss_pred EEecCCCCCHHHHHHHHHhcCCcEEEECchhhHH-----H----HHHHhhc-----C-ceEEEecCCc------------
Confidence 9999999999999999999999999998765321 1 1111111 1 1233332211
Q ss_pred CcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecc
Q 006688 364 RDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITG 443 (635)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g 443 (635)
...+.+...............++|+|||+|||||||.||||+++|++++.+. ......++++++|++++.+|++|+.+
T Consensus 133 -~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~d~~~~~~p~~~~~g 210 (503)
T 4fuq_A 133 -RGSLTDAAAGASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNS-LTLVDYWRFTPDDVLIHALPIYHTHG 210 (503)
T ss_dssp -CSHHHHHHHTSCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHH-HHHHHHTTCCTTCEEEECSCSSSHCC
T ss_pred -ccccchhhhcCCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHH-HHHHHHhCCCCCCEEEEeCChHHHHH
Confidence 0111111111122223335678999999999999999999999999977655 44455789999999999999999998
Q ss_pred hhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCH
Q 006688 444 HSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINP 523 (635)
Q Consensus 444 ~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~ 523 (635)
+...++.+++.|+++++.+. ++++.+++.++ ++|+++++|+++..|++... .....+++||.+++|||++++
T Consensus 211 ~~~~~~~~l~~g~~~~~~~~----~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~gg~~l~~ 282 (503)
T 4fuq_A 211 LFVASNVTLFARGSMIFLPK----FDPDKILDLMA--RATVLMGVPTFYTRLLQSPR--LTKETTGHMRLFISGSAPLLA 282 (503)
T ss_dssp CCCCHHHHHHTTCEEEECSS----CCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--CSTTTTTTCCEEEECSSCCCH
T ss_pred HHHHHHHHHHhCCEEEEcCC----CCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--ccccchhhcEEEEECCCCCCH
Confidence 76677889999999999874 59999999998 89999999999999998754 245567899999999999999
Q ss_pred HHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEc-CCCCccCCCcceEEEEecCCC
Q 006688 524 SAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWP 602 (635)
Q Consensus 524 ~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD-~~g~~vp~g~~GEL~i~g~~~ 602 (635)
++.+.|.+.++ .+++|.||+||++..++... .....++++|+|++|++++|+| ++++++|.|++|||+|+| |
T Consensus 283 ~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~--~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g--~ 355 (503)
T 4fuq_A 283 DTHREWSAKTG---HAVLERYGMTETNMNTSNPY--DGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKG--P 355 (503)
T ss_dssp HHHHHHHHHHS---CCEEECCEETTTEECBCCCS--SSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEES--T
T ss_pred HHHHHHHHHhC---CCccceEcccccCcccccCC--CCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEEC--C
Confidence 99999999987 78999999999987654332 2245678899999999999999 889999999999999999 9
Q ss_pred cchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 603 GAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 603 ~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
++++|||++|+.|.+.|.. +|||||||+|++
T Consensus 356 ~v~~GY~~~~~~t~~~f~~--~g~~~TGDl~~~ 386 (503)
T 4fuq_A 356 NVFKGYWRMPEKTKSEFRD--DGFFITGDLGKI 386 (503)
T ss_dssp TSCCCBTTCHHHHHHTBCT--TSCEEEEEEEEE
T ss_pred chhhhhcCChhhhHhhhCC--CCCeEcceeEEE
Confidence 9999999999999999854 789999999985
No 11
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.1e-60 Score=528.88 Aligned_cols=385 Identities=19% Similarity=0.228 Sum_probs=313.8
Q ss_pred hHHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHH
Q 006688 200 NICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (635)
Q Consensus 200 ~~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~ 279 (635)
.++.++|+++ ++++|+++|+++.+. .+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||++
T Consensus 16 ~~l~~~l~~~-a~~~p~~~A~~~~~~----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 90 (517)
T 3r44_A 16 KNIGWMLRQR-ATVSPRLQAYVEPST----DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAK 90 (517)
T ss_dssp GCHHHHHHHH-HHHSTTSEEEEEGGG----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cCHHHHHHHH-HHhCCCCeEEEeCCc----CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHH
Confidence 4588999998 899999999998642 36899999999999999999999999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccc
Q 006688 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (635)
Q Consensus 280 ~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (635)
+|++++||+|.++.+++.+++++++++++|++.... ..+...... ......++.+..
T Consensus 91 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~----~~~~~~~~~~~~---------- 147 (517)
T 3r44_A 91 LGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSA---------PVIDAIRAQ----ADPPGTVTDWIG---------- 147 (517)
T ss_dssp HTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHHHHHHS----SSCCTTCCEEEE----------
T ss_pred hCcEEEecCcccCHHHHHHHHHhcCceEEEECCchH---------HHHHHHHhc----cCCccEEEEccC----------
Confidence 999999999999999999999999999999986542 222221111 111111111110
Q ss_pred cCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcc
Q 006688 360 WQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (635)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~ 439 (635)
...+.+.........+.....++|++||+|||||||.||||+++|++++.+.. .....++++++|++++.+|++
T Consensus 148 -----~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~p~~ 221 (517)
T 3r44_A 148 -----ADSLAERLRSAAADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAAS-SWASTIDVRYRDRLLLPLPMF 221 (517)
T ss_dssp -----HHHHHHHHHHCCCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHH-HHHHHSCCCTTCEEEECSCTT
T ss_pred -----cccHHHHhhccCcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHH-HHHHhcCCCCCCEEEEeCchH
Confidence 01122222222223334456789999999999999999999999999766554 444578999999999999999
Q ss_pred eecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 440 ~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
|+.++. .++.+++.|+++++.+. +++..+++.|+++++|++.++|+++..|.+... ....++++||.+++|||
T Consensus 222 ~~~~~~-~~~~~~~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~i~~gGe 294 (517)
T 3r44_A 222 HVAALT-TVIFSAMRGVTLISMPQ----FDATKVWSLIVEERVCIGGAVPAILNFMRQVPE--FAELDAPDFRYFITGGA 294 (517)
T ss_dssp SHHHHH-HHHHHHHHTCEEEECSS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHH--HHHCCCTTCCEEEECSS
T ss_pred HHHHHH-HHHHHHhcCeEEEEeCC----CCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc--cccCCCCcccEEEECCC
Confidence 999864 44445559999999865 599999999999999999999999999988643 24567899999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEec
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g 599 (635)
++++++.+.|.+. + ++++|.||+||+++.++.........+.+++|+|+++++++|+|+++++++.| .|||+|+|
T Consensus 295 ~l~~~~~~~~~~~-~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~GEl~v~g 369 (517)
T 3r44_A 295 PMPEALIKIYAAK-N---IEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKS 369 (517)
T ss_dssp CCCHHHHHHHHHT-T---CEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE-EEEEEEEE
T ss_pred CCCHHHHHHHHhc-C---CcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC-CeEEEEeC
Confidence 9999999999876 4 88999999999987665543333345678999999999999999999999999 89999999
Q ss_pred CCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 600 ~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+++++|||++|+.|.+.|. +|||||||+|++
T Consensus 370 --~~v~~GY~~~p~~t~~~f~---~g~~~TGDl~~~ 400 (517)
T 3r44_A 370 --DILLKEYWNRPEATRDAFD---NGWFRTGDIGEI 400 (517)
T ss_dssp --TTSCSEETTCHHHHHHTEE---TTEEEEEEEEEE
T ss_pred --cchhhhhCCChhhhHhhhc---CCCEecceeEEE
Confidence 9999999999999999883 799999999985
No 12
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.4e-60 Score=566.64 Aligned_cols=450 Identities=17% Similarity=0.221 Sum_probs=326.6
Q ss_pred ccCCChhhhhccCCCChHHHHHHHhhhccChhhHHHHHHhhcccccccccccccccccccCCCCccccCCCCcchHHHHH
Q 006688 126 IVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIASEFYWKEKWGQRVCSENLDVRKGNVKIEWFKGGITNICYNC 205 (635)
Q Consensus 126 ~~y~~~~f~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 205 (635)
-.|++++.++.++.+|..++..+++.+...++....+. .|..... .. .++. ..+++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----------~~-----~~p~--~~tl~~~ 66 (979)
T 3tsy_A 9 HHSSGLVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDV----IFRSKLP-----------DI-----YIPN--HLSLHDY 66 (979)
T ss_dssp ------------------------------------CC----CBCCSSC-----------CC-----CCCT--TSCHHHH
T ss_pred ccccCcccCcchhhhhhhHHHHHHHhhhhcccCCCCCc----eeecCCC-----------CC-----CCCC--CCCHHHH
Confidence 47999999999999999999999998887777543322 2211110 00 0111 1247899
Q ss_pred HhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEE
Q 006688 206 LDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHS 285 (635)
Q Consensus 206 l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~v 285 (635)
|+++ ++++|+++|+++.. .++++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++|++++
T Consensus 67 l~~~-a~~~pd~~Al~~~~----~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~v 141 (979)
T 3tsy_A 67 IFQN-ISEFATKPCLINGP----TGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATAT 141 (979)
T ss_dssp HTTT-GGGTTTSEEEEETT----TCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEE
T ss_pred HHHH-HHhCCCCeEEEECC----CCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEE
Confidence 9998 89999999999753 237899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccCCCCc
Q 006688 286 VVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQDGRD 365 (635)
Q Consensus 286 pld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~ 365 (635)
|++|.++.+++.++++++++++||++....... ...... .. ..++.++... .... ....
T Consensus 142 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~---------~~~~~~-----~~-~~~~~~~~~~-----~~~~-~~~~ 200 (979)
T 3tsy_A 142 AANPFFTPAEIAKQAKASNTKLIITEARYVDKI---------KPLQND-----DG-VVIVCIDDNE-----SVPI-PEGC 200 (979)
T ss_dssp EECTTSCHHHHHHHHHHHTEEEEEECSTTTTTS---------HHHHHT-----SC-CEEEECCCCT-----TSCC-CTTE
T ss_pred eeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHH---------HHHhhc-----CC-ceEEEeCCcc-----cccC-Cccc
Confidence 999999999999999999999999987754321 111111 11 2244444321 0000 0112
Q ss_pred chhhhhcCcCCC---CCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHH---HhcCCCCCcEEEEeCCcc
Q 006688 366 IWWQDVVPKYPT---KCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFK---YAFDYKPSDVYWCTADCG 439 (635)
Q Consensus 366 ~~~~~~~~~~~~---~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~~d~~l~~~~l~ 439 (635)
..+.++...... ..+.....++|++||+|||||||.||||+++|++++........ ..+++.++|++++.+|++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 280 (979)
T 3tsy_A 201 LRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMF 280 (979)
T ss_dssp EEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSS
T ss_pred ccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchH
Confidence 223333322211 22333567899999999999999999999999997765543321 135678899999999999
Q ss_pred eecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 440 ~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
|++++...++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|++... ....++++||.+++|||
T Consensus 281 h~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~~~~gg~ 354 (979)
T 3tsy_A 281 HIYALNSIMLCGLRVGAAILIMPK----FEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE--TEKYDLSSIRVVKSGAA 354 (979)
T ss_dssp SHHHHHHTHHHHHHHTCEEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGG--GGTSCCTTCCEEEESSC
T ss_pred HHHHHHHHHHHHHhcCcEEEEeCC----CCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCcc--ccCCCccceEEEEEcCC
Confidence 999976778889999999999875 599999999999999999999999999998754 24567899999999999
Q ss_pred CCCHHHHHHHHHHhCCCCccccccccccccccccccc---CCCCCCCCCCCCCCCCCCCeEEEEc-CCCCccCCCcceEE
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITP---LPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYL 595 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~---~~~~~~~~~~siG~pl~g~~v~IvD-~~g~~vp~g~~GEL 595 (635)
++++++.++|.+.++ +++++|.||+||++.+++.. .......+.+++|+|++|++++|+| ++++++|.|++|||
T Consensus 355 ~l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl 432 (979)
T 3tsy_A 355 PLGKELEDAVNAKFP--NAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEI 432 (979)
T ss_dssp CCCSSHHHHHHHHCT--TCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEE
T ss_pred CCCHHHHHHHHHHCC--CCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEE
Confidence 999999999999996 48999999999998765432 1222345678999999999999999 57999999999999
Q ss_pred EEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 596 CIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 596 ~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+|+| +++++|||++|+.|.+.|.. +|||||||+|++
T Consensus 433 ~i~g--~~v~~GY~~~p~~t~~~f~~--~g~~~TGDl~~~ 468 (979)
T 3tsy_A 433 CIRG--HQIMKGYLNNPAATAETIDK--DGWLHTGDIGLI 468 (979)
T ss_dssp EEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEE
T ss_pred EEEC--CCccccccCChhhhhhhccC--CCcEEcCCEEEE
Confidence 9999 99999999999999998753 889999999985
No 13
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=2e-60 Score=538.05 Aligned_cols=391 Identities=19% Similarity=0.251 Sum_probs=317.8
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
++++|+++ ++ ||++|+++.+ +++||+||+++++++|+.|++.|+++||+|+|+++|++++++++|||+|+|
T Consensus 29 l~~~~~~~-a~--pd~~Av~~~~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG 99 (617)
T 3rg2_A 29 LTDILTRH-AA--SDSIAVIDGE------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLG 99 (617)
T ss_dssp TTHHHHTT-TT--CCSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHh-hC--CCCeEEecCC------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcC
Confidence 68999998 55 9999999654 889999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
+++||++|.++.+++.++++++++++++++....... ......... .....+..+...+...
T Consensus 100 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~---------- 161 (617)
T 3rg2_A 100 VAPVLALFSHQRSELNAYASQIEPALLIADRQHALFS----GDDFLNTFV----TEHSSIRVVQLLNDSG---------- 161 (617)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGS----SSHHHHHHH----HHSTTCCEEEEETCCS----------
T ss_pred eEEccCCccccHHHHHHHHhhcCceEEEecccccccc----cHHHHHHHh----hcCCccceeeeccccc----------
Confidence 9999999999999999999999999999987643110 011111111 1224455555444321
Q ss_pred CCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCccee
Q 006688 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWI 441 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~ 441 (635)
...+.+...............++++|||+|||||||.||||+++|++++.+. ......+++.++|++++.+|++|.
T Consensus 162 ---~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~-~~~~~~~~~~~~~~~l~~~p~~~~ 237 (617)
T 3rg2_A 162 ---EHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSV-RRSVEICQFTQQTRYLCAIPAAHN 237 (617)
T ss_dssp ---TTBHHHHHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHH-HHHHHHHTCCTTCEEEECSCTTSH
T ss_pred ---ccchhhhhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHH-HHHHHhcCCCCcceEEEeccchhh
Confidence 1112222222222223344578999999999999999999999999977655 444557899999999999999988
Q ss_pred cchhH-HhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 442 TGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 442 ~g~~~-~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
+++.. ++|.+|+.|+++++.+. +++..+++.|+++++|++.++|+++..|++.........++++||.+++|||+
T Consensus 238 ~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~ 313 (617)
T 3rg2_A 238 YAMSSPGSLGVFLAGGTVVLAAD----PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGAR 313 (617)
T ss_dssp HHHHSSHHHHHHHHTCEEEECSS----CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSC
T ss_pred hhhhHHHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCc
Confidence 77543 68999999999999875 48999999999999999999999999998754322233468999999999999
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCC-CCCeEEEEcCCCCccCCCcceEEEEec
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPF-FGVQPVIVDEKGVEIEGECSGYLCIKS 599 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl-~g~~v~IvD~~g~~vp~g~~GEL~i~g 599 (635)
+++++.++|.+.++ ++++|.||+||+++.++.... .......++|+|+ ++++++|+|++++++|.|++|||+|+|
T Consensus 314 l~~~~~~~~~~~~~---~~~~~~YG~tE~~~~~~~~~~-~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~GEl~i~G 389 (617)
T 3rg2_A 314 LSATLAARIPAEIG---CQLQQVFGMAEGLVNYTRLDD-SAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRG 389 (617)
T ss_dssp CCHHHHHHHHHHTC---SEEEEEEEETTEEEEECCTTS-CHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEEC
T ss_pred CCHHHHHHHHHHhC---CcEEEEeccCcceeecccCCC-cccccccCCCccCCCCceEEEECCCCCCCCCCCceEEEecC
Confidence 99999999999887 889999999999865543221 1112345799998 788999999999999999999999999
Q ss_pred CCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 600 SWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 600 ~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+++++||+|+|+.|.+.|.. +|||||||+||+
T Consensus 390 --~~v~~GY~~~p~~t~~~f~~--~~~yrTGDl~~~ 421 (617)
T 3rg2_A 390 --PYTFRGYYKSPQHNASAFDA--NGFYCSGDLISI 421 (617)
T ss_dssp --SSSCSCCTTCHHHHHHHBCT--TSCEEEEEEEEE
T ss_pred --ccccchhcCChhhhhhccCC--CCceecCceEEE
Confidence 99999999999999999864 789999999985
No 14
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=2.1e-60 Score=533.07 Aligned_cols=373 Identities=21% Similarity=0.255 Sum_probs=311.8
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
+++++|+++ ++++|+++|+++.+ +++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++
T Consensus 76 ~l~~~l~~~-a~~~pd~~A~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 148 (570)
T 4gr5_A 76 CVHELFEAQ-AARAPDAVALLHEA------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKA 148 (570)
T ss_dssp CHHHHHHHH-HHHCTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CHHHHHHHH-HHHCCCCeEEECCC------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 488999999 89999999999754 78999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|++|.++.+++.++++++++++||++....... .....++..+..
T Consensus 149 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------------------~~~~~~~~~~~~---------- 198 (570)
T 4gr5_A 149 GGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------------------TGTTTLYVEDEA---------- 198 (570)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------------------CSSEEEECCC------------
T ss_pred CCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------------------cCCcceeeeccc----------
Confidence 99999999999999999999999999999987643211 111222211110
Q ss_pred CCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
..............++|+|||+|||||||.||||+++|++++.... . ...++++++|++++.+|++|
T Consensus 199 -----------~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~-~~~~~~~~~d~~l~~~p~~~ 265 (570)
T 4gr5_A 199 -----------ASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYL-G-QDYAGFGPDEVFLQCSPVSW 265 (570)
T ss_dssp ----------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHS-S-CCSSCCSTTCEEEECSCTTS
T ss_pred -----------cccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHH-h-hhhcCCCCCCEEEEecCccH
Confidence 0000111222345789999999999999999999999999654432 2 23567889999999999999
Q ss_pred ecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 441 ~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
+.+ .+.++.+|+.|+++++.+.. . +++..+++.|+++++|++.++|+++..|++... ..+++||.+++|||+
T Consensus 266 ~~~-~~~~~~~l~~G~~~v~~~~~-~-~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-----~~~~~lr~~~~gG~~ 337 (570)
T 4gr5_A 266 DAF-GLELFGALLFGARCVLQSGQ-N-PDPLEIGELVARHGVTMLQLSASLFNFLVDEVP-----EAFEGVRYAITGGEP 337 (570)
T ss_dssp STH-HHHHHHHHTTTCEEEECSSS-S-CCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG-----GGGTTCSEEEEESSC
T ss_pred HHH-HHHHHHHHhcCCEEEEcCCc-c-CCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch-----hhCCCceEEEEeccc
Confidence 876 56889999999999998753 2 599999999999999999999999999987643 347899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccC--CCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEe
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL--PGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIK 598 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~--~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~ 598 (635)
+++++++++.+.++ +++++|.||+||+++.++... .........++|+|++|++++|+|++++++|.|++|||+|+
T Consensus 338 l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~ 415 (570)
T 4gr5_A 338 ASVPHVAKARRDHP--ALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVA 415 (570)
T ss_dssp CCHHHHHHHHHHCT--TCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEE
T ss_pred CCHHHHHHHHHhCC--CcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEe
Confidence 99999999999886 589999999999987665432 12223455679999999999999999999999999999999
Q ss_pred cCCCcchhhhcCChhHHHHhhcCC------CCceEEcCCeEec
Q 006688 599 SSWPGAFRTLYGDHERYETTYFKP------FPGYYFTGDGCSR 635 (635)
Q Consensus 599 g~~~~v~~GY~~~~e~t~~~~~~~------~~g~yrTGDlgr~ 635 (635)
| +++++|||++|+.|.+.|..+ .+|||||||+|++
T Consensus 416 g--~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~ 456 (570)
T 4gr5_A 416 G--AGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARR 456 (570)
T ss_dssp E--TTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEE
T ss_pred e--cccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEE
Confidence 9 999999999999999988632 3479999999985
No 15
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=3.7e-61 Score=528.24 Aligned_cols=396 Identities=18% Similarity=0.194 Sum_probs=307.3
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCC---CCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHH
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEAND---PGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~---~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~ 277 (635)
++.++|+++ ++++|+++|+++.+.. .+..+++||+||+++++++|+.|+++|+ +||+|+|+++|++++++++|||
T Consensus 25 tl~~~l~~~-a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~ 102 (480)
T 3t5a_A 25 SLPAALRAC-ARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGA 102 (480)
T ss_dssp CHHHHHHHH-HHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHH
T ss_pred cHHHHHHHH-HHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHH
Confidence 378999998 8999999999987521 1334899999999999999999999996 9999999999999999999999
Q ss_pred HHhCCeEEecCC---CCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccc
Q 006688 278 ARIGAVHSVVFA---GFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMT 354 (635)
Q Consensus 278 l~~Ga~~vpld~---~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~ 354 (635)
+++|+++|||++ .++.+++.++++++++++||++..... .+....... .......++.++...
T Consensus 103 ~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~---------~~~~~~~~~--~~~~~~~~~~~~~~~--- 168 (480)
T 3t5a_A 103 LQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVD---------DVVQHVARR--PGESPPSIIEVDLLD--- 168 (480)
T ss_dssp HHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHH---------HHHHTCC--------CCEEEEGGGSC---
T ss_pred HHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHH---------HHHHHHhcc--ccccccceeEecccc---
Confidence 999999999999 888999999999999999999876421 111110000 000111233322111
Q ss_pred ccccccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCC------
Q 006688 355 RENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKP------ 428 (635)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~------ 428 (635)
.............++++|||+|||||||.||||+++|++++.+.... ...+.+.+
T Consensus 169 ------------------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~~~~~~~~~~~~ 229 (480)
T 3t5a_A 169 ------------------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQL-MSGYFADTDGIPPP 229 (480)
T ss_dssp ------------------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHH-HHHHCTTTTTCCCT
T ss_pred ------------------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHH-HHHhccccccCCCC
Confidence 01111222334578999999999999999999999999977665443 44677777
Q ss_pred CcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcC--ccccccC
Q 006688 429 SDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDG--NEYVTRY 506 (635)
Q Consensus 429 ~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~--~~~~~~~ 506 (635)
+|++++.+|++|+.++++.++.+|+.|+++++.+.....+++..+++.|+++++| +..+|+++..++... .......
T Consensus 230 ~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~ 308 (480)
T 3t5a_A 230 NSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGR 308 (480)
T ss_dssp TEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTC
T ss_pred CCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCccccccc
Confidence 9999999999999998788999999999999986421112889999999999999 888899888887632 1123456
Q ss_pred CCCCceEEEecCCCCCHHHHHHHHHHhCC---CCcccccccccccccccccccCCCCC----------------------
Q 006688 507 SRKSLRVLGSVGEPINPSAWRWFFNVVGD---SRCPISDTWWQTETGGFMITPLPGAW---------------------- 561 (635)
Q Consensus 507 ~l~sLr~v~~gGe~l~~~l~~~~~~~~~~---~~~~l~n~YG~TE~~~~~~~~~~~~~---------------------- 561 (635)
++++||.+++|||+++++++++|.+.++. ++.+++|.||+||+++.++.......
T Consensus 309 ~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 388 (480)
T 3t5a_A 309 DLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGG 388 (480)
T ss_dssp CCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSS
T ss_pred chhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCC
Confidence 78999999999999999999999999842 24689999999999987665432211
Q ss_pred -CCCCCCCCCCCCCCeEEEEcCC-CCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhc-------C--CCCceEEcC
Q 006688 562 -PQKPGSATFPFFGVQPVIVDEK-GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYF-------K--PFPGYYFTG 630 (635)
Q Consensus 562 -~~~~~siG~pl~g~~v~IvD~~-g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~-------~--~~~g~yrTG 630 (635)
..+..++|+|++ ++++|+|++ ++++|.|++|||+|+| |++++|||++|+.|.+.|. . +.+||||||
T Consensus 389 ~~~~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~GEl~v~g--~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TG 465 (480)
T 3t5a_A 389 GATSLISYMLPRS-PIVRIVDSDTCIECPDGTVGEIWVHG--DNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTG 465 (480)
T ss_dssp SCEEEECEECCSS-SEEEEEETTTTEECCTTBCEEEEEES--TTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEE
T ss_pred CcceeeecCcccC-CEEEEEcCCCCcCCCCCCEEEEEEeC--CccccccccCcchhHHHHhhhhccccCCCCCCCeeecc
Confidence 124468999999 999999975 8999999999999999 9999999999999999984 1 146799999
Q ss_pred CeEec
Q 006688 631 DGCSR 635 (635)
Q Consensus 631 Dlgr~ 635 (635)
|+||+
T Consensus 466 Dlg~~ 470 (480)
T 3t5a_A 466 DSGFV 470 (480)
T ss_dssp EEEEE
T ss_pred ceeeE
Confidence 99985
No 16
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=8.7e-60 Score=523.61 Aligned_cols=394 Identities=22% Similarity=0.305 Sum_probs=310.6
Q ss_pred cchHHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHH
Q 006688 198 ITNICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277 (635)
Q Consensus 198 ~~~~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~ 277 (635)
..|++.++|+++ ++ +|+++|+++.+ +++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||
T Consensus 22 ~~~~~~~~l~~~-~~-~p~~~A~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~ 93 (529)
T 2v7b_A 22 LFNFAAYLFRLN-ET-RAGKTAYIDDT------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGA 93 (529)
T ss_dssp CCCHHHHHHHHT-GG-GTTSEEEECSS------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHH
T ss_pred ceeHHHHHHHhh-hc-cCCceEEEeCC------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 346788999998 78 99999999643 78999999999999999999999999999999999999999999999
Q ss_pred HHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCc-cEEEEecCCcccccc
Q 006688 278 ARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISV-DVCLTYENQSAMTRE 356 (635)
Q Consensus 278 l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vi~~~~~~~~~~~ 356 (635)
+++|++++|+++.++.+++.+++++++++++|++.... ..+..... ....+ ..++.++....
T Consensus 94 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~----~~~~~~~~~~~~~~~~~---- 156 (529)
T 2v7b_A 94 LYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV---------QNVTQALE----SAEHDGCQLIVSQPRES---- 156 (529)
T ss_dssp HHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGH---------HHHHHHHH----CC---CCEEEEECC-------
T ss_pred HHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhh---------hHHHHHHh----hccccCceEEEeccccc----
Confidence 99999999999999999999999999999999987542 11221111 11222 33444332210
Q ss_pred ccccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeC
Q 006688 357 NTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTA 436 (635)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~ 436 (635)
. ......+.+.........+.....++|++||+|||||||.||||+++|+++..+........+++.++|++++.+
T Consensus 157 -~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~ 232 (529)
T 2v7b_A 157 -E---PRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAA 232 (529)
T ss_dssp -------CCCBHHHHHHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESS
T ss_pred -c---cccccchhhhhccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEee
Confidence 0 000112333332222222233457899999999999999999999999996333333333457788999999999
Q ss_pred CcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEe
Q 006688 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS 516 (635)
Q Consensus 437 ~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~ 516 (635)
|++|+.++...++.+|..|+++++.+.. +++..+++.|+++++|+++++|+++..|++.... ......+||.+++
T Consensus 233 p~~~~~g~~~~~~~~l~~G~~~v~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~lr~~~~ 307 (529)
T 2v7b_A 233 KLFFAYGLGNGLTFPLSVGATAILMAER---PTADAIFARLVEHRPTVFYGVPTLYANMLVSPNL--PARADVAIRICTS 307 (529)
T ss_dssp CTTSHHHHHHHTHHHHHHTCEEECCCSC---CCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTC--CCGGGCCCCEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCcEEEEecCC---CCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccc--ccccCCceEEEEE
Confidence 9999999766778899999999987532 5999999999999999999999999999876431 1111248999999
Q ss_pred cCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEE
Q 006688 517 VGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLC 596 (635)
Q Consensus 517 gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~ 596 (635)
|||++++++.++|.+.++ ++++|.||+||++..++..... ..+.+++|+|++|++++|+|++|+++|.|++|||+
T Consensus 308 gGe~l~~~~~~~~~~~~g---~~i~~~YG~TE~~~~~~~~~~~--~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~ 382 (529)
T 2v7b_A 308 AGEALPREIGERFTAHFG---CEILDGIGSTEMLHIFLSNRAG--AVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLY 382 (529)
T ss_dssp CSSCCCHHHHHHHHHHHS---CCEEEEEECTTTSSEEEECCTT--CCCTTSCCEECTTCEEEEECTTSCBCCTTSCEEEE
T ss_pred cCCCCCHHHHHHHHHHhC---CceeeeEchhhcCceeeccccC--CCccCCcccCCCCCEEEEECCCCCCCCCCCccEEE
Confidence 999999999999999987 7899999999997655443222 24668899999999999999999999999999999
Q ss_pred EecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 597 IKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 597 i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
|+| ++++.|||++|+.|.+.|. +|||+|||+|++
T Consensus 383 v~g--~~~~~gY~~~~~~t~~~f~---~~~~~TGDl~~~ 416 (529)
T 2v7b_A 383 IKG--PSAAVMYWNNREKSRATFL---GEWIRSGDKYCR 416 (529)
T ss_dssp EEC--TTCCCCBTTCHHHHHHHEE---TTEEEEEEEEEE
T ss_pred Eec--CCcccccCCChHHHHHhhh---cCCcccCceEEE
Confidence 999 9999999999999999874 789999999985
No 17
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=2.3e-60 Score=529.67 Aligned_cols=392 Identities=21% Similarity=0.236 Sum_probs=317.7
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.++|+++ ++++|+++|+++.+ +++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 32 l~~~l~~~-a~~~p~~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G 104 (544)
T 3o83_A 32 LTRILTVG-VQSHPHSLAIICGE------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAG 104 (544)
T ss_dssp TTHHHHHH-HHHCTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HHhCCCceEEEcCC------CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhC
Confidence 67899998 89999999999654 889999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|+++.++.+++.+++++++++++|++...... ........ +.........++.++....
T Consensus 105 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~--------- 167 (544)
T 3o83_A 105 VVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVF----SNNQFIDS----LHDVNLSPEIILMLNHQAT--------- 167 (544)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGG----SSSHHHHH----HHHTTCCCSEEEEETCCTT---------
T ss_pred cEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccc----cHHHHHHH----HhhcccCcceEEEecCCcc---------
Confidence 999999999999999999999999999998764210 01111111 1222344555555543210
Q ss_pred CCCcchhhhhcCcCC-CCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 362 DGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
...+.+...... .........++|+|||+|||||||.||||+++|++++.+. ......++++++|++++.+|++|
T Consensus 168 ---~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~-~~~~~~~~~~~~d~~l~~~p~~h 243 (544)
T 3o83_A 168 ---DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSV-RASAEICGLNSNTRLLCALPAPH 243 (544)
T ss_dssp ---SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHH-HHHHHHTTCCTTCEEEECSCTTS
T ss_pred ---ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHH-HHHHHHhCCCCCCeEEEecCcce
Confidence 011111111111 1112234568999999999999999999999999977655 44555789999999999999999
Q ss_pred ecchhH-HhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 441 ITGHSY-VTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 441 ~~g~~~-~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
.+++.. .++.+|..|+++++.+. +++..+++.|+++++|++.++|+++..|++.... ...++++||.+++|||
T Consensus 244 ~~~~~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~lr~i~~gG~ 317 (544)
T 3o83_A 244 NFMLSSPGALGVLHAGGCVVMAPN----PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQ--YKDQIQSLKLLQVGGA 317 (544)
T ss_dssp HHHHHSSHHHHHHHTTCEEEECSS----CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTT--THHHHTTCCEEEEESS
T ss_pred EeecchHHHHHHHHcCCEEEECCC----CCHHHHHHHHHHHCCCEEEechHHHHHHHhchhh--ccccCCcceEEEEcCC
Confidence 887654 68899999999999875 4999999999999999999999999999886432 2345789999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCC-CCCeEEEEcCCCCccCCCcceEEEEe
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPF-FGVQPVIVDEKGVEIEGECSGYLCIK 598 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl-~g~~v~IvD~~g~~vp~g~~GEL~i~ 598 (635)
++++++.+++.+.++ ++++|.||+||+++.++.... .......++|+|+ ++++++|+|++++++|.|++|||+|+
T Consensus 318 ~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~-~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~ 393 (544)
T 3o83_A 318 SFPESLARQVPEVLN---CKLQQVFGMAEGLVNYTRLDD-SDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATR 393 (544)
T ss_dssp CCCHHHHTHHHHHHC---SEEEEEEECTTSCEEECCTTS-CHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEE
T ss_pred CCCHHHHHHHHHHhC---CcEEeeeccccccceeecCCC-chhhccCCCceecCCCcEEEEECCCCCCCCCCCeeEEEEe
Confidence 999999999999987 889999999998755433211 1123346899997 89999999999999999999999999
Q ss_pred cCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 599 SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 599 g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
| |++++|||++|+.|.+.|.. +|||||||+|++
T Consensus 394 g--~~v~~GY~~~~~~t~~~f~~--~g~~~TGDlg~~ 426 (544)
T 3o83_A 394 G--PYTFCGYYQSPEHNSQVFDE--DNYYYSGDLVQR 426 (544)
T ss_dssp C--TTSCSCCTTCHHHHHHHBCT--TCCEEEEEEEEE
T ss_pred c--CCcchhhcCChhhhhhhCCC--CCCeEcCCEEEE
Confidence 9 99999999999999998854 889999999985
No 18
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=4.9e-60 Score=527.96 Aligned_cols=396 Identities=16% Similarity=0.173 Sum_probs=315.3
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++|.++ ++++|+++|++..... ...+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++
T Consensus 21 tl~~~l~~~-a~~~p~~~a~~a~~~~-~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 98 (550)
T 3rix_A 21 TAGEQLHKA-MKRYALVPGTIAFTDA-HIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFI 98 (550)
T ss_dssp CHHHHHHHH-HHHHHTSTTCEEEEET-TTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHH
T ss_pred CHHHHHHHH-HHhCCCCceEEEeeec-CCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHc
Confidence 478899888 8999999997621110 23478999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|++|.++.+++.+++++++++++|+++... ..+... ....+.+..++.++.....
T Consensus 99 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~----~~~~~~~~~~~~~~~~~~~------- 158 (550)
T 3rix_A 99 GVAVAPANDIYNERELLNSMNISQPTVVFVSKKGL---------QKILNV----QKKLPIIQKIIIMDSKTDY------- 158 (550)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGH---------HHHHHH----HHHCTTCCEEEETTCSSCB-------
T ss_pred CCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHH---------HHHHHH----HhhCCCcceEEEEcCCccc-------
Confidence 99999999999999999999999999999987642 122222 2223556677766543200
Q ss_pred CCCCcchhhhhcCcCC-------CCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHh--cCCCCCcE
Q 006688 361 QDGRDIWWQDVVPKYP-------TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA--FDYKPSDV 431 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~~d~ 431 (635)
.....+.++..... ...+.....++|+|||+|||||||.||||+++|++++.+........ +++.++|+
T Consensus 159 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~ 236 (550)
T 3rix_A 159 --QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTA 236 (550)
T ss_dssp --TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCE
T ss_pred --cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcE
Confidence 00111222211100 11111223467899999999999999999999999766543332211 46788999
Q ss_pred EEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCc
Q 006688 432 YWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSL 511 (635)
Q Consensus 432 ~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sL 511 (635)
+++.+|++|+.++ +.++.+|+.|+++++.+. +++..+++.|+++++|+++++|+++..|++... ....++++|
T Consensus 237 ~l~~~p~~~~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~l 309 (550)
T 3rix_A 237 ILSVVPFHHGFGM-FTTLGYLICGFRVVLMYR----FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL--IDKYDLSNL 309 (550)
T ss_dssp EEECSCTTSHHHH-HHHHHHHHHTCEEEECSS----CCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCG--GGGSCCTTC
T ss_pred EEEechHHHHHHH-HHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcc--ccccCcccc
Confidence 9999999999995 678889999999999864 599999999999999999999999999998754 345678999
Q ss_pred eEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEc-CCCCccCCC
Q 006688 512 RVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGE 590 (635)
Q Consensus 512 r~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD-~~g~~vp~g 590 (635)
|.+++|||++++++.++|.+.++. ..++|.||+||+++.++..... ..+++++|+|+++++++|+| ++++++|.|
T Consensus 310 r~i~~gG~~l~~~~~~~~~~~~~~--~~v~~~YG~TE~~~~~~~~~~~--~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g 385 (550)
T 3rix_A 310 HEIASGGAPLSKEVGEAVAKRFHL--PGIRQGYGLTETTSAILITPEG--DDKPGAVGKVVPFFEAKVVDLDTGKTLGVN 385 (550)
T ss_dssp CEEEECSSCCCHHHHHHHHHHTTC--SCCEEEEECGGGSSEEEECCTT--CCCTTEEEEECTTCEEEEECTTTCCBCCTT
T ss_pred cEEEEecCCCCHHHHHHHHHHcCC--CccccccCcCccccceecCCCC--CCCCCCcccccCCcEEEEEeCCCCcCCCCC
Confidence 999999999999999999999982 3589999999999776654332 35678999999999999999 679999999
Q ss_pred cceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 591 CSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 591 ~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+.|||+|+| +++++|||++|+.|.+.|.. +|||||||+|++
T Consensus 386 ~~GEl~v~g--~~v~~GY~~~~~~t~~~~~~--~g~~~TGDl~~~ 426 (550)
T 3rix_A 386 QRGELCVRG--PMIMSGYVNNPEATNALIDK--DGWLHSGDIAYW 426 (550)
T ss_dssp CCEEEEEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEE
T ss_pred CCeEEEEeC--CCcchhhcCChhhhhhhcCC--CCCeecCcEEEE
Confidence 999999999 99999999999999887743 899999999985
No 19
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=9.8e-60 Score=524.28 Aligned_cols=391 Identities=20% Similarity=0.223 Sum_probs=316.9
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.++|+++ ++++|+++|+++... +..+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 20 l~~~l~~~-a~~~p~~~a~~~~~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~G 96 (541)
T 1v25_A 20 LWDFLERA-AALFGRKEVVSRLHT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMG 96 (541)
T ss_dssp THHHHHHH-HHHSTTCEEEEECTT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-HHhCCCceEEEEecC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcC
Confidence 67899988 899999999996431 345889999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|++|.++.+++.++++++++++||+++... ..+. ......+.++.++.++...+
T Consensus 97 av~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~----~~~~~~~~~~~~~~~~~~~~--------- 154 (541)
T 1v25_A 97 AVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL---------PLVE----AIRGELKTVQHFVVMDEKAP--------- 154 (541)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHH----HHGGGCSSCCEEEESSSCCC---------
T ss_pred cEEEecCcccCHHHHHHHHHhCCCcEEEEChhHH---------HHHH----HHHhhCCCccEEEEecCCCC---------
Confidence 9999999999999999999999999999986531 1111 11222345556665543210
Q ss_pred CCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHH-HHHhcCCCCCcEEEEeCCcce
Q 006688 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT-FKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~-~~~~~~~~~~d~~l~~~~l~~ 440 (635)
.....+.+.+...... ....++++++|+|||||||.||||+++|++++.+.... ....++++++|++++.+|++|
T Consensus 155 -~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 230 (541)
T 1v25_A 155 -EGYLAYEEALGEEADP---VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFH 230 (541)
T ss_dssp -TTCEEHHHHCCSCCCC---CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTS
T ss_pred -cccccHHHHhhccCCc---ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchh
Confidence 0112344443322211 33567899999999999999999999999976554331 123467889999999999999
Q ss_pred ecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 441 ~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
+.++ ..++.+++.|+++++.+.. +++..+++.|+++++|+++++|+++..|++... ....++++||.+++|||+
T Consensus 231 ~~~~-~~~~~~l~~G~~~v~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~~lr~i~~gG~~ 304 (541)
T 1v25_A 231 VNAW-CLPYAATLVGAKQVLPGPR---LDPASLVELFDGEGVTFTAGVPTVWLALADYLE--STGHRLKTLRRLVVGGSA 304 (541)
T ss_dssp HHHH-THHHHHHHHTCEEEECTTC---CSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHH--HHTCCCSSCCEEEECSSC
T ss_pred hhHH-HHHHHHHhcCceEEeeCCC---CCHHHHHHHHHhcCeeEEecchHHHHHHHhhhh--ccCCcchhccEEEECCCC
Confidence 9885 4678899999999997632 499999999999999999999999999987643 134567899999999999
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccCCCC----C-----CCCCCCCCCCCCCCeEEEEcCCCCccCC--
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA----W-----PQKPGSATFPFFGVQPVIVDEKGVEIEG-- 589 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~----~-----~~~~~siG~pl~g~~v~IvD~~g~~vp~-- 589 (635)
++++++++| +.++ ++++|.||+||++.+++...... . ....+++|+|++|++++|+|++++++|.
T Consensus 305 l~~~~~~~~-~~~g---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~ 380 (541)
T 1v25_A 305 APRSLIARF-ERMG---VEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDG 380 (541)
T ss_dssp CCHHHHHHH-HHTT---CEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSS
T ss_pred CCHHHHHHH-HHhC---CceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCC
Confidence 999999999 6676 78999999999987665432210 0 0234789999999999999999999994
Q ss_pred CcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 590 ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 590 g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
++.|||+|+| |++++|||++|+.|.+.|.. +|||||||+|++
T Consensus 381 ~~~GEl~v~g--~~v~~GY~~~p~~t~~~f~~--~g~~~TGDlg~~ 422 (541)
T 1v25_A 381 KALGEVQLKG--PWITGGYYGNEEATRSALTP--DGFFRTGDIAVW 422 (541)
T ss_dssp CCCEEEEEES--TTSBSSCBTCHHHHHTTBCT--TSCEEEEEEEEE
T ss_pred CcceEEEEeC--cchhccccCChhhhhhhccC--CCCeEcCCEEEE
Confidence 3689999999 99999999999999998753 799999999985
No 20
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=3.6e-59 Score=515.46 Aligned_cols=379 Identities=20% Similarity=0.208 Sum_probs=305.6
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++|+++ ++++|+++|+++.. ..+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++
T Consensus 3 tl~~~l~~~-a~~~p~~~a~~~~~----~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 77 (504)
T 1t5h_X 3 TVNEMLRRA-ATRAPDHCALAVPA----RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRL 77 (504)
T ss_dssp CHHHHHHHH-HHHCTTSEEEEETT----TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHhCCCceEEEEcC----CCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 367899998 89999999999752 2378999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEE--eCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVIT--SNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENT 358 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~ 358 (635)
|++++|+||.++.+++.+++++++++++|+ +.... ..+ ... ...++ ++.+++...
T Consensus 78 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~---------~~~---~~~----~~~~~-~~~~~~~~~------ 134 (504)
T 1t5h_X 78 GAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVA---------DAI---FQS----GSGAR-IIFLGDLVR------ 134 (504)
T ss_dssp TCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHH---------HHH---HHH----CCCCE-EEEGGGTEE------
T ss_pred CcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhh---------hhh---hhc----cccce-eEEecchhh------
Confidence 999999999999999999999999999998 54321 111 011 01222 222221100
Q ss_pred ccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCC--CCCcEEEEeC
Q 006688 359 KWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDY--KPSDVYWCTA 436 (635)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~--~~~d~~l~~~ 436 (635)
. .+... .....+.....++|+|||+|||||||.||||+++|+++..+.. .....+++ .++|++++.+
T Consensus 135 ---~------~~~~~-~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~-~~~~~~~~~~~~~~~~l~~~ 203 (504)
T 1t5h_X 135 ---D------GEPYS-YGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVL-FMSTQVGLRHGRHNVVLGLM 203 (504)
T ss_dssp ---T------TEECC-CSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHH-HHHHTTCCCSSTTCEEEECS
T ss_pred ---c------Ccccc-cCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHH-HHHHhhCCCCCCCceEEeec
Confidence 0 00000 0111111345689999999999999999999999999766554 34446788 8899999999
Q ss_pred CcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEe
Q 006688 437 DCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS 516 (635)
Q Consensus 437 ~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~ 516 (635)
|++|+.++...++.+|+.|+++++.+. +++..+++.|+++++|+++++|++++.|++.........++++||.+++
T Consensus 204 p~~~~~g~~~~~~~~l~~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~ 279 (504)
T 1t5h_X 204 PLYHVVGFFAVLVAALALDGTYVVVEE----FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTF 279 (504)
T ss_dssp CTTSHHHHTTTHHHHHHTTCEEEECSS----CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEE
T ss_pred chhhcchHHHHHHHHHHcCceEEeCCC----CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEE
Confidence 999999976778999999999999875 5999999999999999999999999999876421123456899999999
Q ss_pred cCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCC---CccCCCcce
Q 006688 517 VGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKG---VEIEGECSG 593 (635)
Q Consensus 517 gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g---~~vp~g~~G 593 (635)
|||++++++.++|.+.++ .+++|.||+||+++. .... ..+.+++|+|+++++++|+|+++ +++|.|+.|
T Consensus 280 gG~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~-~~~~----~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~G 351 (504)
T 1t5h_X 280 AGATMPDAVLETVHQHLP---GEKVNIYGTTEAMNS-LYMR----QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEG 351 (504)
T ss_dssp CCTTCCHHHHHHHHHHCC---SEEEEEEEETTTEEE-EEEE----SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCE
T ss_pred cCCcCCHHHHHHHHHhcC---cceeeeecccccccc-cccc----CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcc
Confidence 999999999999999987 789999999998432 2211 24567899999999999999887 999999999
Q ss_pred EEEEe-cCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 594 YLCIK-SSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 594 EL~i~-g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
||+|+ | +++++||+++|+.|.+.| .+|||||||+|++
T Consensus 352 El~v~gg--~~~~~GY~~~~~~t~~~f---~~g~~~TGDlg~~ 389 (504)
T 1t5h_X 352 ELIVAAS--DSAFVGYLNQPQATAEKL---QDGWYRTSDVAVW 389 (504)
T ss_dssp EEEEECC--TTSCCCBTTCHHHHHHHE---ETTEEEEEEEEEE
T ss_pred eEEEeCC--ceeeceecCCchhhhhhh---cCCccccCcEEEE
Confidence 99999 8 899999999999999987 3799999999985
No 21
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=3.1e-59 Score=520.97 Aligned_cols=391 Identities=17% Similarity=0.165 Sum_probs=315.3
Q ss_pred HHHH-HHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHH
Q 006688 201 ICYN-CLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACAR 279 (635)
Q Consensus 201 ~~~~-~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~ 279 (635)
.+.+ +|.++ ++++ +++|+++.. ..+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||++
T Consensus 26 ~l~~~~l~~~-~~~~-~~~A~~~~~----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~ 99 (548)
T 2d1s_A 26 GTQLRKYMER-YAKL-GAIAFTNAV----TGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLF 99 (548)
T ss_dssp HHHHHHHHHH-HHHH-TCEEEEETT----TCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHH
T ss_pred cHHHHHHHhh-hccc-CCceEEEcC----CCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHh
Confidence 4667 77777 7888 999999732 237899999999999999999999999999999999999999999999999
Q ss_pred hCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccc
Q 006688 280 IGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTK 359 (635)
Q Consensus 280 ~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~ 359 (635)
+|++++|++|.++.+++.++++++++++||+++... ..+...... .+....++.++.... .
T Consensus 100 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~----~~~~~~~~~~~~~~~-----~- 160 (548)
T 2d1s_A 100 IGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGL---------DKVITVQKT----VTTIKTIVILDSKVD-----Y- 160 (548)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTH---------HHHHHHHHH----STTCCEEEETTCSSC-----B-
T ss_pred hCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHH---------HHHHHHhcC----CCCCCEEEEeCCccc-----c-
Confidence 999999999999999999999999999999987642 122222111 122445555543210 0
Q ss_pred cCCCCcchhhhhcCcCCCC-CCcccCC-----C-CCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHh---cCCCCC
Q 006688 360 WQDGRDIWWQDVVPKYPTK-CEVEWVD-----A-EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA---FDYKPS 429 (635)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~-~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~---~~~~~~ 429 (635)
.....+.++....... .+..... + +|++||+|||||||.||||+++|++++.+... .... ++++++
T Consensus 161 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~-~~~~~~~~~~~~~ 236 (548)
T 2d1s_A 161 ---RGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSH-ARDPIYGNQVSPG 236 (548)
T ss_dssp ---TTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHH-HTCTTTSCCCCTT
T ss_pred ---cccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHH-hhchhhccCCCcc
Confidence 0011233333221111 1111222 4 89999999999999999999999997665433 3333 678899
Q ss_pred cEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCC
Q 006688 430 DVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRK 509 (635)
Q Consensus 430 d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~ 509 (635)
|++++.+|++|+.++...++.+| .|+++++.+. +++..+++.|+++++|+++++|+++..|++... ....+++
T Consensus 237 d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~l~ 309 (548)
T 2d1s_A 237 TAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTK----FDEETFLKTLQDYKCTSVILVPTLFAILNKSEL--LNKYDLS 309 (548)
T ss_dssp CEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCC----CCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC--GGGSCCT
T ss_pred ceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCC----CCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc--ccccccc
Confidence 99999999999998655566777 9999999864 599999999999999999999999999998754 2355789
Q ss_pred CceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEc-CCCCccC
Q 006688 510 SLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIE 588 (635)
Q Consensus 510 sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD-~~g~~vp 588 (635)
+||.+++|||++++++.++|.+.++ +.+++|.||+||++..++.... ...+.+++|+|+|+++++|+| ++++++|
T Consensus 310 ~lr~i~~gG~~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~--~~~~~~~~G~~~~~~~~~i~d~~~~~~~~ 385 (548)
T 2d1s_A 310 NLVEIASGGAPLSKEVGEAVARRFN--LPGVRQGYGLTETTSAIIITPE--GDDKPGASGKVVPLFKAKVIDLDTKKSLG 385 (548)
T ss_dssp TCCEEEECSSCCCHHHHHHHHHHTT--CSCCEEEEECGGGSSEEEECCT--TCCCTTCCBEECTTCEEEEECTTTCCBCC
T ss_pred ceeEEEEcCccCCHHHHHHHHHHcC--CCceeeccccccccceeeecCc--ccCCCCCCCccCCCceEEEEeCCcCccCC
Confidence 9999999999999999999999996 4789999999999876654322 235678999999999999999 7999999
Q ss_pred CCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 589 GECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 589 ~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+|+.|||+|+| +++++|||++|+.|.+.|.. +|||||||+|++
T Consensus 386 ~g~~GEl~v~g--~~v~~GY~~~~~~t~~~f~~--~g~~~TGDl~~~ 428 (548)
T 2d1s_A 386 PNRRGEVCVKG--PMLMKGYVNNPEATKELIDE--EGWLHTGDIGYY 428 (548)
T ss_dssp TTCCEEEEEES--TTSCSEETTCHHHHHHHBCT--TSCEEEEEEEEE
T ss_pred CCCCeEEEECC--HHHhhhhcCChHHhhhcccC--CcEEEccCEEEE
Confidence 99999999999 99999999999999988743 789999999985
No 22
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=1.6e-59 Score=524.55 Aligned_cols=373 Identities=20% Similarity=0.205 Sum_probs=301.6
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++|+++ ++++|+++|+++.+ +++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++
T Consensus 40 ~l~~~l~~~-a~~~p~~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 112 (563)
T 1amu_A 40 TIHQLFEEQ-VSKRPNNVAIVCEN------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKA 112 (563)
T ss_dssp CHHHHHHHH-HHHCTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHH-HHHCCCCeEEEeCC------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 378999998 89999999999643 78999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++||+|.++.+++.++++++++++||++..... . ... ......+..++...
T Consensus 113 Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~---------~----~~~----~~~~~~~~~~~~~~--------- 166 (563)
T 1amu_A 113 GGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVH---------L----IHN----IQFNGQVEIFEEDT--------- 166 (563)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHH---------H----HTT----SCCCSEEEECCCST---------
T ss_pred CCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhh---------h----hhh----ccccCceeeecchh---------
Confidence 999999999999999999999999999999865311 0 000 01111222222110
Q ss_pred CCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 361 QDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
+ .............++|+|||+|||||||.||||+++|++++... ......++++++|++++.+|++|
T Consensus 167 -------~----~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~-~~~~~~~~~~~~d~~l~~~p~~~ 234 (563)
T 1amu_A 167 -------I----KIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLK-VFFENSLNVTEKDRIGQFASISF 234 (563)
T ss_dssp -------T----TTSCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHH-HHHHHTSCCCTTCEEEECSCTTS
T ss_pred -------h----ccccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHH-HHHHHhcCCCCCCEEEEeCCccH
Confidence 0 00011111223467899999999999999999999999976544 45555789999999999999999
Q ss_pred ecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 441 ~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
+.++ +.++.+|+.|+++++.+.... +++..+++.|+++++|++.++|+++..|.. ..+++||.+++||++
T Consensus 235 ~~~~-~~~~~~l~~G~~~v~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~--------~~~~~lr~~~~gG~~ 304 (563)
T 1amu_A 235 DASV-WEMFMALLTGASLYIILKDTI-NDFVKFEQYINQKEITVITLPPTYVVHLDP--------ERILSIQTLITAGSA 304 (563)
T ss_dssp THHH-HHHHHHHTTTCEEEECCHHHH-TCHHHHHHHHHHTTCCEEEECHHHHTTSCT--------TTCCSCSEEEEESSC
T ss_pred HHHH-HHHHHHHHCCCEEEEcChHhh-cCHHHHHHHHHHcCCcEEEeCHHHHHHHHh--------cccccccEEEEEEec
Confidence 9985 678899999999999864322 389999999999999999999999887743 246799999999999
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccC-CCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEec
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPL-PGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKS 599 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~-~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g 599 (635)
++++++++|.+. ++++|.||+||++..++... ......+..++|+|++|++++|+|++++++|.|++|||+|+|
T Consensus 305 l~~~~~~~~~~~-----~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g 379 (563)
T 1amu_A 305 TSPSLVNKWKEK-----VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGG 379 (563)
T ss_dssp CCHHHHHHHTTT-----SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEE
T ss_pred CCHHHHHHHHhC-----CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEec
Confidence 999999988763 67999999999987655432 222223567899999999999999999999999999999999
Q ss_pred CCCcchhhhcCChhHHHHhhcC----CCCceEEcCCeEec
Q 006688 600 SWPGAFRTLYGDHERYETTYFK----PFPGYYFTGDGCSR 635 (635)
Q Consensus 600 ~~~~v~~GY~~~~e~t~~~~~~----~~~g~yrTGDlgr~ 635 (635)
+++++|||++|+.|.+.|.. +.+|||+|||+|++
T Consensus 380 --~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~ 417 (563)
T 1amu_A 380 --EGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARW 417 (563)
T ss_dssp --TTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEE
T ss_pred --hhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEE
Confidence 99999999999999998853 23569999999985
No 23
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1e-59 Score=520.89 Aligned_cols=379 Identities=18% Similarity=0.229 Sum_probs=310.7
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.++|+++ ++++|+++|+++.+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 3 l~~~l~~~-a~~~p~~~A~~~~~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G 75 (512)
T 3fce_A 3 LLEQIEKW-AAETPDQTAFVWRD------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAG 75 (512)
T ss_dssp HHHHHHHH-HHHSTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-HHHCCCceEEEeCC------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 56888888 89999999999754 789999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|++|.++.+++.+++++++++++|++........ . ..++..+.
T Consensus 76 ~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~--------------------~-~~~~~~~~------------ 122 (512)
T 3fce_A 76 HAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDL--------------------P-VRIVSEDN------------ 122 (512)
T ss_dssp CCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSCC--------------------S-SEEEETHH------------
T ss_pred CEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccccc--------------------c-cceechhh------------
Confidence 99999999999999999999999999999755321100 0 00111000
Q ss_pred CCCcchhhhhc--CcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcc
Q 006688 362 DGRDIWWQDVV--PKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (635)
Q Consensus 362 ~~~~~~~~~~~--~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~ 439 (635)
+.+.. .......+.....++|+++|+|||||||.||||+++|++++... ......++++++|++++.+|++
T Consensus 123 ------~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~-~~~~~~~~~~~~d~~l~~~p~~ 195 (512)
T 3fce_A 123 ------LKDIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFT-KWAVEDFNLQTGQVFLNQAPFS 195 (512)
T ss_dssp ------HHHHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHH-HHHHHHTTCCSSCEEEECSCTT
T ss_pred ------hhhhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHH-HHHHHhcCCCCCCEEEEeCCcc
Confidence 00000 01111223344678999999999999999999999999977655 4455578999999999999999
Q ss_pred eecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 440 ~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
|+.++ +.++.+|+.|+++++.+.... +++..+++.|+++++|++.++|+++..++.... ....++++||.+++|||
T Consensus 196 ~~~~~-~~~~~~l~~G~~~~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~~G~ 271 (512)
T 3fce_A 196 FDLSV-MDIYPSLVTGGTLWAIDKDMI-ARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS--FSESMLPNMKTFLFCGE 271 (512)
T ss_dssp SGGGH-HHHHHHHHTTCEEEECCHHHH-HSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT--CSTTTSTTCCEEEECSS
T ss_pred HhHHH-HHHHHHHhCCCEEEECCHHHh-hCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc--ccchhCccccEEEEecC
Confidence 99985 678999999999999864222 388999999999999999999999999987654 24567899999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCC---CCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEE
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLC 596 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~---~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~ 596 (635)
++++++.++|.+.++ +++++|.||+||+++.++...... ...+..++|+|+++++++|+|++|+++|.|+.|||+
T Consensus 272 ~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~ 349 (512)
T 3fce_A 272 VLPNEVARKLIERFP--KATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIV 349 (512)
T ss_dssp CCCHHHHHHHHHHCT--TCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEE
T ss_pred cCCHHHHHHHHHHCC--CCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCeEEEE
Confidence 999999999999996 489999999999987665432111 123567899999999999999999999999999999
Q ss_pred EecCCCcchhhhcCChhHHHHhhcC-CCCceEEcCCeEec
Q 006688 597 IKSSWPGAFRTLYGDHERYETTYFK-PFPGYYFTGDGCSR 635 (635)
Q Consensus 597 i~g~~~~v~~GY~~~~e~t~~~~~~-~~~g~yrTGDlgr~ 635 (635)
|+| |+++.|||++|+.|.+.|.. +.+|||+|||+|++
T Consensus 350 v~g--~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~ 387 (512)
T 3fce_A 350 IVG--PSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV 387 (512)
T ss_dssp EES--TTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE
T ss_pred Eec--cccChhhcCCchhhhhccccCCCCEEEeCCceEEe
Confidence 999 99999999999999998842 34669999999974
No 24
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=5.6e-59 Score=514.64 Aligned_cols=377 Identities=21% Similarity=0.241 Sum_probs=309.9
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.++|+++ ++++||++|+++.+ +++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 8 l~~~l~~~-a~~~pd~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 80 (509)
T 3ivr_A 8 LADVYRRN-AALFPDRTAFMVDG------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIG 80 (509)
T ss_dssp HHHHHHHH-HHHSTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-HHHCCCceEEEECC------cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhC
Confidence 78999998 89999999999744 889999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++||+|.++.+++.+++++++++++|++.... ..+.. .......+..++.++...
T Consensus 81 a~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~----~~~~~~~~~~~~~~~~~~---------- 137 (509)
T 3ivr_A 81 AILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYR---------DIVAG----VLPSLGGVKKAYAIGDGS---------- 137 (509)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTH---------HHHHH----HGGGCSSCCEEEESSCCC----------
T ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEECcchh---------hhHHh----hhcccCCceEEEEcCCCC----------
Confidence 9999999999999999999999999999987642 11111 112334556666554321
Q ss_pred CCCcchhhhhcC-cCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 362 DGRDIWWQDVVP-KYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 362 ~~~~~~~~~~~~-~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
..+.+... ......+.....++|++||+|||||||.||||+++|++++... ......++++++|++++.+|++|
T Consensus 138 ----~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~d~~l~~~p~~~ 212 (509)
T 3ivr_A 138 ----GPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQ-SSLVDAWRLTEADVNLGMLPLFH 212 (509)
T ss_dssp ----SSCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHH-HHHHHHTTCCTTCEEEECSCTTS
T ss_pred ----cChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHH-HHHHHhhCCCCCcEEEEeCCCcc
Confidence 11111111 1112223345678999999999999999999999999976655 44555789999999999999999
Q ss_pred ecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 441 ~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
+.++. .++.+++.|++.++... +++..+++.|+++++|++.++|+++..|++.. ...++++||.++.+|++
T Consensus 213 ~~g~~-~~~~~~~~~g~~~~~~~----~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~----~~~~l~~lr~~~~~g~~ 283 (509)
T 3ivr_A 213 VTGLG-LMLTLQQAGGASVIAAK----FDPAQAARDIEAHKVTVMAEFAPMLGNILDQA----APAQLASLRAVTGLDTP 283 (509)
T ss_dssp HHHHH-HHHHHHHHTCEEEECSS----CCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC----CGGGGTTCCEEEEECCH
T ss_pred hhHHH-HHHHHHHhCCcEEEecc----cCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc----cccchhhhheecccCCh
Confidence 99864 45555666666666552 59999999999999999999999999999875 24467899999999997
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecC
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~ 600 (635)
++.+.+.+.++ +++++|.||+||++++++..... ....++|+|++|++++|+|++++++|+|++|||+|+|
T Consensus 284 ---~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~---~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g- 354 (509)
T 3ivr_A 284 ---ETIERFEATCP--NATFWATFGQSETSGLSTFAPYR---DRPKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRG- 354 (509)
T ss_dssp ---HHHHHHHHHCT--TCEEEEEEEEGGGTEEEEEEEGG---GSTTSCCEECTTCEEEEECTTSCBCCTTCCEEEEEES-
T ss_pred ---HHHHHHHHhcC--CCeEEcccCccccccccccCccc---cCCCcccccCCCcEEEEECCCCCCCCCCCceEEEEec-
Confidence 88899999885 48999999999999766554322 2334599999999999999999999999999999999
Q ss_pred CCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 601 ~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+++++||+++|+.|.+.|. +|||||||+|++
T Consensus 355 -~~~~~gY~~~~~~t~~~f~---~g~~~TGDl~~~ 385 (509)
T 3ivr_A 355 -PTVFKGYWNNAAATQHAFR---NGWHHTGDMGRF 385 (509)
T ss_dssp -TTSCCEETTCHHHHHHHTG---GGSEEEEEEEEE
T ss_pred -CCccccccCCHHHhHHHhh---cCCcccccEEEE
Confidence 9999999999999999874 789999999985
No 25
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=9.9e-59 Score=512.85 Aligned_cols=378 Identities=17% Similarity=0.217 Sum_probs=312.9
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDI-GVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~-Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
+.++|+++ |+++|+++|+++.+ +++||+||+++++++|+.|++. |+++|++|+|+++|++++++++|||+++
T Consensus 3 l~~~l~~~-a~~~p~~~Al~~~~------~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~ 75 (511)
T 3e7w_A 3 LLHAIQTH-AETYPQTDAFRSQG------QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKA 75 (511)
T ss_dssp HHHHHHHH-HHHSTTSEEEEETT------EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHCCCCeEEEcCC------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHh
Confidence 57888888 89999999999644 8899999999999999999875 8889999999999999999999999999
Q ss_pred CCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCcccccccccc
Q 006688 281 GAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKW 360 (635)
Q Consensus 281 Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~ 360 (635)
|++++|+++.++.+++.++++++++++||+++........ ..+. .+
T Consensus 76 G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~------------------~~~~-~~--------------- 121 (511)
T 3e7w_A 76 GHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDAVG------------------QQIQ-TV--------------- 121 (511)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTCCC------------------CSSC-EE---------------
T ss_pred CCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchhcc------------------cccc-ee---------------
Confidence 9999999999999999999999999999997653211000 0000 11
Q ss_pred CCCCcchhhhhcCcC-CCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcc
Q 006688 361 QDGRDIWWQDVVPKY-PTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCG 439 (635)
Q Consensus 361 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~ 439 (635)
.+.++.... ..........++|++||+|||||||.||||+++|++++... .+....++++++|++++.+|++
T Consensus 122 ------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~d~~l~~~p~~ 194 (511)
T 3e7w_A 122 ------SAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFT-DWICADFPVSGGKIFLNQAPFS 194 (511)
T ss_dssp ------EHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHH-HHHHHHSTTTTTCEEEECSCTT
T ss_pred ------cHhhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHH-HHHHHhcCCCccceEEEeCCcc
Confidence 111111111 11122334578999999999999999999999999976655 4455578999999999999999
Q ss_pred eecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 440 ~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
|+.++ +.++.+|+.|+++++.+.... +++..+++.|+++++|++.++|+++..++.... .....++++|.+++|||
T Consensus 195 ~~~~~-~~~~~~l~~G~~~~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~l~~~~~~G~ 270 (511)
T 3e7w_A 195 FDLSV-MDLYPCLQSGGTLHCVTKDAV-NKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG--FSQDLLPHADTFMFCGE 270 (511)
T ss_dssp STHHH-HHHHHHHHTTCEEEECCHHHH-HSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT--CSTTTCTTCCEEEECSS
T ss_pred HHHHH-HHHHHHHhcCCEEEEcChhhh-cCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc--cccccCCcccEEEEecC
Confidence 99984 678999999999999864222 388999999999999999999999999988754 24556889999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcccccccccccccccccccCCC---CCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEE
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPG---AWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLC 596 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~ 596 (635)
++++++.+++.+.++ +++++|.||+||+++.++..... .......++|+|++|++++|+|++|+++|.|++|||+
T Consensus 271 ~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~ 348 (511)
T 3e7w_A 271 VLPVSVAKALLERFP--KAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIV 348 (511)
T ss_dssp CCCHHHHHHHHHHCT--TCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEE
T ss_pred CCCHHHHHHHHHHCC--CcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEE
Confidence 999999999999996 48999999999998765543111 1123556799999999999999999999999999999
Q ss_pred EecCCCcchhhhcCChhHHHHhhcCCCCc-eEEcCCeEec
Q 006688 597 IKSSWPGAFRTLYGDHERYETTYFKPFPG-YYFTGDGCSR 635 (635)
Q Consensus 597 i~g~~~~v~~GY~~~~e~t~~~~~~~~~g-~yrTGDlgr~ 635 (635)
|+| |++++|||++|+.|.+.|+...++ ||+|||+|++
T Consensus 349 v~g--~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~ 386 (511)
T 3e7w_A 349 IAG--PSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI 386 (511)
T ss_dssp EES--TTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE
T ss_pred Eec--CccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc
Confidence 999 999999999999999998753233 7999999974
No 26
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.3e-58 Score=513.40 Aligned_cols=379 Identities=16% Similarity=0.176 Sum_probs=310.4
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.++|+++ ++++|+++|+++.+ +++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 6 l~~~l~~~-a~~~p~~~a~~~~~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G 78 (521)
T 3l8c_A 6 MIDSIEQF-AQTQADFPVYDCLG------ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSG 78 (521)
T ss_dssp HHHHHHHH-HHHSTTSEEEEETT------EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-HHHCCCCcceecCC------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 67889998 89999999999754 789999999999999999999999999999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|++|.++.+++.+++++++++++|+++......... .++.+...
T Consensus 79 ~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~---------------------~~~~~~~~----------- 126 (521)
T 3l8c_A 79 HAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI---------------------SLVSLSEI----------- 126 (521)
T ss_dssp CCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTS---------------------EEEEHHHH-----------
T ss_pred CEEEecCccccHHHHHHHHHhCCCCEEEecCccccccccC---------------------cccchhhh-----------
Confidence 9999999999999999999999999999987653221111 01111100
Q ss_pred CCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHh--cCCCCCcEEEEeCCcc
Q 006688 362 DGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYA--FDYKPSDVYWCTADCG 439 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~--~~~~~~d~~l~~~~l~ 439 (635)
.................++|+++|+|||||||.||||+++|++++.... +.... +++.+++++++..|++
T Consensus 127 -------~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~~~~~~l~~~~~~ 198 (521)
T 3l8c_A 127 -------ESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTN-WMIEDAAFDVPKQPQMLAQPPYS 198 (521)
T ss_dssp -------HHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHH-HHHHCTTTCCCSSCEEECCSCTT
T ss_pred -------hhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHH-HHhhccccCCCCCCeEEecCCcc
Confidence 0000000111122345789999999999999999999999999766543 33333 6788999999999999
Q ss_pred eecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCC
Q 006688 440 WITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGE 519 (635)
Q Consensus 440 ~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe 519 (635)
|+.++ +.++.+|..|+++++.+.... .++..+++.|+++++|++.++|+++..++.... ....++++||.+++||+
T Consensus 199 ~~~~~-~~~~~~l~~G~~~~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~lr~~~~gG~ 274 (521)
T 3l8c_A 199 FDLSV-MYWAPTLALGGTLFALPKELV-ADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD--FCQAKMPALTHFYFDGE 274 (521)
T ss_dssp SGGGH-HHHHHHHHTTCEEEECCGGGT-TCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT--CSTTTCTTCCEEEECSS
T ss_pred HHHHH-HHHHHHHhcCCEEEEcCHHHh-hCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc--cccccCccceEEEEecc
Confidence 99884 678889999999999875433 389999999999999999999999999987654 24557899999999999
Q ss_pred CCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCC---CCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEE
Q 006688 520 PINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGA---WPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLC 596 (635)
Q Consensus 520 ~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~---~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~ 596 (635)
++++++.+++.+.++ +++++|.||+||+++.++...... ......++|+|++|++++|+|++|+++|.|+.|||+
T Consensus 275 ~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl~ 352 (521)
T 3l8c_A 275 ELTVSTARKLFERFP--SAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEII 352 (521)
T ss_dssp CCCHHHHHHHHHHCT--TCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEEE
T ss_pred cCCHHHHHHHHHHCC--CceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCceEEE
Confidence 999999999999986 489999999999987654321110 113456899999999999999999999999999999
Q ss_pred EecCCCcchhhhcCChhHHHHhhcC-CCCceEEcCCeEec
Q 006688 597 IKSSWPGAFRTLYGDHERYETTYFK-PFPGYYFTGDGCSR 635 (635)
Q Consensus 597 i~g~~~~v~~GY~~~~e~t~~~~~~-~~~g~yrTGDlgr~ 635 (635)
|+| |++++|||++|+.|.+.|+. +.+|||+|||+|++
T Consensus 353 v~g--~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~ 390 (521)
T 3l8c_A 353 VTG--PAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSL 390 (521)
T ss_dssp EES--TTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE
T ss_pred ecc--cccChhhcCCchHhhccCcCCCCceeeeCCCEEEE
Confidence 999 99999999999999999853 34679999999985
No 27
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1.8e-57 Score=511.95 Aligned_cols=396 Identities=17% Similarity=0.163 Sum_probs=310.7
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++|+++ ++++|+++|+++.+. +..+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++
T Consensus 12 tl~~~l~~~-a~~~p~~~a~~~~~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 88 (590)
T 3kxw_A 12 SLVDVVRLR-ALHSPNKKSCTFLNK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYA 88 (590)
T ss_dssp SHHHHHHHH-HHHCTTSEEEEEEET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHH-HHhCCCCeEEEEEcC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHh
Confidence 378999998 899999999998652 44689999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCC---CHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccc
Q 006688 281 GAVHSVVFAGF---SSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTREN 357 (635)
Q Consensus 281 Ga~~vpld~~~---~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~ 357 (635)
|++++|++|.+ +.+++.+++++++++++|++..... .+.... ....+....+..+...
T Consensus 89 G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~---------~~~~~~---~~~~~~~~~~~~~~~~------- 149 (590)
T 3kxw_A 89 GCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIK---------KFTADE---LNTNPKFLKIPAIALE------- 149 (590)
T ss_dssp TCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHH---------HHCC--------CCEETTEEEEEGG-------
T ss_pred CcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHH---------HHHHhh---hhhcccccccceeech-------
Confidence 99999999988 4578999999999999998764311 000000 0000111111111100
Q ss_pred cccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 006688 358 TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD 437 (635)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~ 437 (635)
+...............++|++||+|||||||.||||+++|++++.+.. .....++++++|++++++|
T Consensus 150 ------------~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~-~~~~~~~~~~~d~~l~~~p 216 (590)
T 3kxw_A 150 ------------SIELNRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLN-KIFTSFHMNDETIIFSWLP 216 (590)
T ss_dssp ------------GCCGGGGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHH-HHHHHTTCCTTCEEEECSC
T ss_pred ------------hccccccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHH-HHHHhhCCCCcCeEEEecC
Confidence 000000111223346789999999999999999999999999776654 4445789999999999999
Q ss_pred cceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCcc-ccccCCCCCceEEEe
Q 006688 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE-YVTRYSRKSLRVLGS 516 (635)
Q Consensus 438 l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~-~~~~~~l~sLr~v~~ 516 (635)
++|+.++...++.+|+.|+++++.+......++..+++.|+++++|++.++|+++..+++.... .....++++||.+++
T Consensus 217 ~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~ 296 (590)
T 3kxw_A 217 PHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFN 296 (590)
T ss_dssp TTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEE
T ss_pred CCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhh
Confidence 9999997656889999999999976421111788999999999999999999999999875321 234567899999999
Q ss_pred cCCCCCHHHHHHHHHHhCC---CCcccccccccccccccccccCCC-------------------------CCCCCCCCC
Q 006688 517 VGEPINPSAWRWFFNVVGD---SRCPISDTWWQTETGGFMITPLPG-------------------------AWPQKPGSA 568 (635)
Q Consensus 517 gGe~l~~~l~~~~~~~~~~---~~~~l~n~YG~TE~~~~~~~~~~~-------------------------~~~~~~~si 568 (635)
|||+++++++++|.+.++. ++.+++|.||+||+++.++..... .......++
T Consensus 297 gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (590)
T 3kxw_A 297 GAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSS 376 (590)
T ss_dssp CSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEecc
Confidence 9999999999999998842 235799999999999876543211 111234689
Q ss_pred CCCCCCCeEEEEcCC-CCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCC----CCc--eEEcCCeEec
Q 006688 569 TFPFFGVQPVIVDEK-GVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKP----FPG--YYFTGDGCSR 635 (635)
Q Consensus 569 G~pl~g~~v~IvD~~-g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~----~~g--~yrTGDlgr~ 635 (635)
|+|+++ ++|+|++ ++++|.|++|||+|+| |++++|||++|+.|.+.|... .+| ||||||+|++
T Consensus 377 G~p~~~--v~i~d~~~~~~~~~g~~GEl~v~g--~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~ 446 (590)
T 3kxw_A 377 GNPIQE--VKIIDPDTLIPCDFDQVGEIWVQS--NSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFL 446 (590)
T ss_dssp CEESSE--EEEECTTTCCBCCTTBCEEEEEES--TTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEE
T ss_pred CCCCCC--eEEEcCCCCcCCCCCCEEEEEEeC--CcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEE
Confidence 999998 8999976 9999999999999999 999999999999999998631 124 9999999974
No 28
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=5.8e-58 Score=505.55 Aligned_cols=367 Identities=19% Similarity=0.245 Sum_probs=296.1
Q ss_pred chHHHHHHhhhhhccCCC-ceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHH
Q 006688 199 TNICYNCLDRNIEAGLGD-KVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277 (635)
Q Consensus 199 ~~~~~~~l~~~~a~~~pd-~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~ 277 (635)
+..+.++|+++ ++++|+ ++|+++.+ +++||+||+++++++|+.|+ .|++|+|+++|++++++++|||
T Consensus 21 ~~tl~~~l~~~-a~~~p~d~~Al~~~~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~ 88 (505)
T 3nyq_A 21 MSSLFPALSPA-PTGAPADRPALRFGE------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAA 88 (505)
T ss_dssp ---CCTTTSSC-CCSGGGGSEEEEETT------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHH
T ss_pred cchhHHHHHHH-HHhCCCCCeEEEECC------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHH
Confidence 34567788887 788887 99999754 89999999999999998875 3889999999999999999999
Q ss_pred HHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccc
Q 006688 278 ARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTREN 357 (635)
Q Consensus 278 l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~ 357 (635)
+++|++++||||.++.+++.++++++++++||++....... ....+.. +.++..
T Consensus 89 ~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~------------------~~~~~~~-~~~~~~------- 142 (505)
T 3nyq_A 89 LLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAELPP------------------ALGALER-VDVDVR------- 142 (505)
T ss_dssp HHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCCCG------------------GGTTSEE-EECCTT-------
T ss_pred HHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccccch------------------hhccccc-cccccc-------
Confidence 99999999999999999999999999999999986531100 0011111 111110
Q ss_pred cccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCC
Q 006688 358 TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTAD 437 (635)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~ 437 (635)
.....+.....++|++||+|||||||.||||+++|++++.+. ......++++++|++++.+|
T Consensus 143 -----------------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~-~~~~~~~~~~~~d~~l~~~p 204 (505)
T 3nyq_A 143 -----------------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTL-DALADAWQWTGEDVLVQGLP 204 (505)
T ss_dssp -----------------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHH-HHHHHHHTCCTTCEEEECCC
T ss_pred -----------------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHH-HHHHHHhCCCCCcEEEEecc
Confidence 011112234568999999999999999999999999976655 44555789999999999999
Q ss_pred cceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccc-cccCCCCCceEEEe
Q 006688 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEY-VTRYSRKSLRVLGS 516 (635)
Q Consensus 438 l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~-~~~~~l~sLr~v~~ 516 (635)
++|..++++.++.+|..|+++++.+. +++..+++.+ ++++|+++++|+++..|++..... .....++++|.+++
T Consensus 205 ~~~~~g~~~~~~~~l~~G~~~~~~~~----~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~ 279 (505)
T 3nyq_A 205 LFHVHGLVLGILGPLRRGGSVRHLGR----FSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVS 279 (505)
T ss_dssp TTSHHHHTTTTHHHHHHTCEEEECSS----CCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCEEEECCC----CChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEE
Confidence 99999987889999999999999864 5899999999 889999999999999998743210 11234678999999
Q ss_pred cCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCC---Ccce
Q 006688 517 VGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEG---ECSG 593 (635)
Q Consensus 517 gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~---g~~G 593 (635)
|||++++++.+++.+.++ .+++|.||+||+++.++.... ...+.+++|+|++|++++|+|+++++++. |++|
T Consensus 280 gg~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~--~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~G 354 (505)
T 3nyq_A 280 GSAALPVHDHERIAAATG---RRVIERYGMTETLMNTSVRAD--GEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVG 354 (505)
T ss_dssp CSSCCCHHHHHHHHHHHS---CCCEEEEEETTTEEEEECCTT--SCCCTTCCCEECTTCEEEEC-----CCCCCCSCCCE
T ss_pred CCCCCCHHHHHHHHHhcC---CeeecccchhhcccccccCCC--CCCCCCCcccCCCCCEEEEECCCCCCcccCCCCceE
Confidence 999999999999999887 789999999999876654432 23567889999999999999999999886 8999
Q ss_pred EEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 594 YLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 594 EL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
||+|+| +++++|||++|+.|.+.|.. +|||||||+|++
T Consensus 355 El~v~g--~~v~~GY~~~~~~t~~~f~~--~g~y~TGDl~~~ 392 (505)
T 3nyq_A 355 EIQVRG--PNLFTEYLNRPDATAAAFTE--DGFFRTGDMAVR 392 (505)
T ss_dssp EEEEES--TTSCCEETTCHHHHHHTBCT--TSCEEEEEEEEE
T ss_pred EEEEec--CchhhhhCCChhHhhhhhcC--CCCCccCCeEEE
Confidence 999999 99999999999999999864 789999999985
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=5e-57 Score=506.80 Aligned_cols=391 Identities=19% Similarity=0.198 Sum_probs=311.7
Q ss_pred HHHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHh
Q 006688 201 ICYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARI 280 (635)
Q Consensus 201 ~~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~ 280 (635)
++.++|+++ ++++|+.+++.... +..+++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||+++
T Consensus 22 tl~~~l~~~-a~~~p~~~~~~~~~---~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 97 (576)
T 3gqw_A 22 TLVDALDYA-ALSSAGMNFYDRRC---QLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYA 97 (576)
T ss_dssp SHHHHHHHH-TTSSCEEEEECTTS---CEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred cHHHHHHHH-hhCCCCeEEeCCCC---CceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHh
Confidence 488999998 89999988875322 34589999999999999999999999999999999999999999999999999
Q ss_pred CCeEEecCCCCC-------HHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccc
Q 006688 281 GAVHSVVFAGFS-------SDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAM 353 (635)
Q Consensus 281 Ga~~vpld~~~~-------~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~ 353 (635)
|++++|+++.++ .+++.++++++++++||+++... ..+... ....+.+. ++..
T Consensus 98 G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~---------~~~~~~----~~~~~~~~-~~~~------ 157 (576)
T 3gqw_A 98 GLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWL---------PLVNAA----THDNPELH-VLSH------ 157 (576)
T ss_dssp TCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGH---------HHHHHH----GGGCTTCE-EEEH------
T ss_pred CCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHH---------HHHHHh----hccCCcce-ecch------
Confidence 999999999999 89999999999999999987642 111111 11111111 1110
Q ss_pred cccccccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEE
Q 006688 354 TRENTKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYW 433 (635)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l 433 (635)
.+.+... ..........++|++||+|||||||.||||+++|++++.+........++++++|+++
T Consensus 158 -------------~~~~~~~--~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l 222 (576)
T 3gqw_A 158 -------------AWFKALP--EADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCV 222 (576)
T ss_dssp -------------HHHHTSC--CCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEE
T ss_pred -------------hhhhccc--ccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEE
Confidence 0111111 1112223456899999999999999999999999998776655444448899999999
Q ss_pred EeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCcc-ccccCCCCCce
Q 006688 434 CTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNE-YVTRYSRKSLR 512 (635)
Q Consensus 434 ~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~-~~~~~~l~sLr 512 (635)
+.+|++|+.++...++.++..|+++++.+.....+++..+++.|+++++|+++++|+++..+.+.... .....++++||
T Consensus 223 ~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr 302 (576)
T 3gqw_A 223 SWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWR 302 (576)
T ss_dssp ECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCC
T ss_pred EcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhH
Confidence 99999999997666788899999999876422223788999999999999999999999988765432 12355789999
Q ss_pred EEEecCCCCCHHHHHHHHHHhCC---CCcccccccccccccccccccCCCCC----------------C----------C
Q 006688 513 VLGSVGEPINPSAWRWFFNVVGD---SRCPISDTWWQTETGGFMITPLPGAW----------------P----------Q 563 (635)
Q Consensus 513 ~v~~gGe~l~~~l~~~~~~~~~~---~~~~l~n~YG~TE~~~~~~~~~~~~~----------------~----------~ 563 (635)
.+++|||+++++++++|.+.++. .+.+++|.||+||++..++....... . .
T Consensus 303 ~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 382 (576)
T 3gqw_A 303 VAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVS 382 (576)
T ss_dssp EEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEE
T ss_pred hhhccCccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCcc
Confidence 99999999999999999998831 13789999999999877654321100 0 0
Q ss_pred CCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 564 KPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 564 ~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
...++|+|++|++++|+|++|+++|.|++|||+|+| +++++|||++|+.+.+.+ .+|||||||+|++
T Consensus 383 ~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g--~~~~~gY~~~~~~~~~~~---~~g~~~TGDl~~~ 449 (576)
T 3gqw_A 383 TFVNCGKALPEHGIEIRNEAGMPVAERVVGHICISG--PSLMSGYFGDQVSQDEIA---ATGWLDTGDLGYL 449 (576)
T ss_dssp EEEBCCEECTTCEEEEECTTSCBCCTTBCEEEEEES--TTSCCCBTTCHHHHHHHH---HHSCEEEEEEEEE
T ss_pred ceeecCCcCCCCeEEEECCCCCCCCCCCeEEEEEeC--ccccccccCCcccccccc---CCCeeeccceEEE
Confidence 113799999999999999999999999999999999 999999999999887654 3789999999974
No 30
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=2e-56 Score=500.30 Aligned_cols=381 Identities=15% Similarity=0.087 Sum_probs=298.5
Q ss_pred HHHHHhhhhhccCCCceEEEEEcC----CCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHH
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEAN----DPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLAC 277 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~----~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~ 277 (635)
+.++|+++ ++++|+++|+++.+. ..+..+++||+||+++++++|+.|++.|+ +||+|+|+++|++++++++|||
T Consensus 22 l~~~l~~~-a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~ 99 (562)
T 3ite_A 22 PSHYIETW-AKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGI 99 (562)
T ss_dssp TTHHHHHH-HHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHH
T ss_pred HHHHHHHH-HHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHH
Confidence 57889998 899999999997642 11234789999999999999999999999 7999999999999999999999
Q ss_pred HHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccc
Q 006688 278 ARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTREN 357 (635)
Q Consensus 278 l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~ 357 (635)
+++|++++||+|.++.+++.+++++++++++|+++........ .....++....
T Consensus 100 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~------------------~~~~~~~~~~~-------- 153 (562)
T 3ite_A 100 MKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVEL------------------PPETKVLDTKN-------- 153 (562)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCCC------------------CTTCEEEETTC--------
T ss_pred HHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEcccccccccc------------------Cccceeecccc--------
Confidence 9999999999999999999999999999999998664321100 11111221111
Q ss_pred cccCCCCcchhhhhcCcCCCCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHH-------hcCCCCCc
Q 006688 358 TKWQDGRDIWWQDVVPKYPTKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKY-------AFDYKPSD 430 (635)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~-------~~~~~~~d 430 (635)
..+.+...............++++|||+|||||||.||||+++|++++......... .+.+...+
T Consensus 154 --------~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (562)
T 3ite_A 154 --------QSFIENLSTQDTSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVG 225 (562)
T ss_dssp --------HHHHHHHHHSCCSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTC
T ss_pred --------hhhhhhcccccccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCc
Confidence 011111111111222234457889999999999999999999999976655333221 24577889
Q ss_pred EEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCC
Q 006688 431 VYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKS 510 (635)
Q Consensus 431 ~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~s 510 (635)
++++.+++.|+.+ ...++.++..|+++++.+.. ..++.+++.|+++++|++.++|++++.+... ..++++
T Consensus 226 ~~~~~~~~~~~~~-~~~~~~~l~~g~~~~~~~~~---~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~------~~~~~~ 295 (562)
T 3ite_A 226 KFLCLASRAFDVH-IGEMFLAWRFGLCAVTGERL---SMLDDLPRTFRELGVTHAGIVPSLLDQTGLV------PEDAPH 295 (562)
T ss_dssp EEECCSCTTSTHH-HHHHHHHHHTTCEEEECCHH---HHHHSHHHHHHHTTCCEEEECHHHHHHHTCC------GGGSTT
T ss_pred eEEEecCchhhhh-HHHHHHHHhcccEEEecchh---hCHHHHHHHHHHcCCCEEEcCHHHHhhcccC------ccccCc
Confidence 9999999999987 46788999999999986532 1357788999999999999999998887433 346789
Q ss_pred ceEEEecCCCCCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcC-CCCccCC
Q 006688 511 LRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEG 589 (635)
Q Consensus 511 Lr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~-~g~~vp~ 589 (635)
||.+++|||++++++.++|.+.++ ++++|.||+||+++.++...... ..+..++|+|+++++++|+|+ .++++|+
T Consensus 296 lr~~~~gG~~l~~~~~~~~~~~~~---~~~~~~YG~TE~~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~~~~~~~~ 371 (562)
T 3ite_A 296 LVYLGVGGEKMTPRTQQIWSSSDR---VALVNVYGPTEVTIGCSAGRILP-DSDTRCIGHPLGDSVAHVLAPGSNEHVKK 371 (562)
T ss_dssp CCEEEEESSCCCHHHHHHHTTCSS---CEEEEEECCGGGCSCSEEEECCT-TSCTTEEEEECTTCEEEEECTTSSCBCCT
T ss_pred eEEEEEecCCCCHHHHHHHhhCCC---cEEEEeeccchheeeeeeeeecC-CCCCccccccCCCCeEEEEeCCCCCCCCC
Confidence 999999999999999999988665 88999999999987655432211 245678999999999999995 6889999
Q ss_pred CcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 590 ECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 590 g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
|++|||+|+| +++++|||++|+.+...+. +.++||||||+|++
T Consensus 372 g~~GEl~v~g--~~v~~GY~~~p~~t~~~~~-~g~~w~~TGDlg~~ 414 (562)
T 3ite_A 372 GMAGELVIEG--SLVANGYLNRPDAKGFCDI-NGRKMYRTGDIVRM 414 (562)
T ss_dssp TSCEEEEEES--TTSCCEESSCTTCCSEEEE-TTEEEEEEEEEEEE
T ss_pred CCceEEEEec--cccchhhCCCccccccccC-CCCEEEecCCEEEE
Confidence 9999999999 9999999999998865433 22349999999985
No 31
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.5e-56 Score=491.33 Aligned_cols=382 Identities=18% Similarity=0.203 Sum_probs=294.2
Q ss_pred HHHHHhhhhhccCCCceEEEEEcCCCCccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhC
Q 006688 202 CYNCLDRNIEAGLGDKVAIYWEANDPGVDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPIAMLACARIG 281 (635)
Q Consensus 202 ~~~~l~~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~G 281 (635)
+.++|+++ ++++|+++|+++.+ +++||+||+++++++|+.|++. +||+|+|+++|++++++++|||+++|
T Consensus 3 l~~~l~~~-a~~~pd~~Al~~~~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~G 72 (501)
T 3ipl_A 3 LDFWLYKQ-AQQNGHHIAITDGQ------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLAN 72 (501)
T ss_dssp CCCHHHHH-HHHHTTSEEEECSS------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-HHhcCCceEEEeCC------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 45678888 89999999999643 7899999999999999999987 89999999999999999999999999
Q ss_pred CeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHHHHHHHHhhhcCCCccEEEEecCCccccccccccC
Q 006688 282 AVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIVDAALDECAKSGISVDVCLTYENQSAMTRENTKWQ 361 (635)
Q Consensus 282 a~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~ 361 (635)
++++|+++.++.+++.+++++++++++|++.............. .+..+.......... .....
T Consensus 73 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~--~~~~~ 136 (501)
T 3ipl_A 73 IEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLD--------------DIEFAGRDITTNGLL--DNTMG 136 (501)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETT--------------C---------------------
T ss_pred CEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccccc--------------cceeeeeeccccccc--ccccc
Confidence 99999999999999999999999999999877543321110000 000000000000000 00000
Q ss_pred CCCcchhhhhcCcCC-CCCCcccCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcce
Q 006688 362 DGRDIWWQDVVPKYP-TKCEVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGW 440 (635)
Q Consensus 362 ~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~ 440 (635)
............... .........++|+|||+|||||||.||||+++|++++.+.. .....++++++|++++.+|++|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~-~~~~~~~~~~~d~~l~~~p~~~ 215 (501)
T 3ipl_A 137 IQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAI-GCKESLGFDRDTNWLSVLPIYH 215 (501)
T ss_dssp -------------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHH-HHHHHTCCCTTCEEEECSCTTS
T ss_pred cccccchhhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHH-HHHHhhCCCccCEEEEeCcHHH
Confidence 000000000000000 01112345789999999999999999999999999776554 4455789999999999999999
Q ss_pred ecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCC
Q 006688 441 ITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEP 520 (635)
Q Consensus 441 ~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~ 520 (635)
+.++ ..++.+|+.|+++++.+. +++..+++.|+++++|+++++|++++.|++.... ...+||.+++|||+
T Consensus 216 ~~g~-~~~~~~l~~G~~~~~~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----~~~~lr~i~~gG~~ 285 (501)
T 3ipl_A 216 ISGL-SVLLRAVIEGFTVRIVDK----FNAEQILTMIKNERITHISLVPQTLNWLMQQGLH-----EPYNLQKILLGGAK 285 (501)
T ss_dssp HHHH-HHHHHHHHHTCEEEECSS----CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC-----SCTTCCEEEECSSC
T ss_pred HHHH-HHHHHHHHcCceEEeCCC----CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC-----CcCcccEEEEeCCC
Confidence 9996 458889999999999875 5999999999999999999999999999987532 12389999999999
Q ss_pred CCHHHHHHHHHHhCCCCcccccccccccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecC
Q 006688 521 INPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSS 600 (635)
Q Consensus 521 l~~~l~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~ 600 (635)
+++++.+++.+ ++ ++++|.||+||+++.++.........+++++|+|++|++++|+|++ .|+.|||+|+|
T Consensus 286 l~~~~~~~~~~-~~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~GEl~v~g- 355 (501)
T 3ipl_A 286 LSATMIETALQ-YN---LPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-----KEGHGELMIKG- 355 (501)
T ss_dssp CCHHHHHHHHH-TT---CCEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----SSCCEEEEEES-
T ss_pred CCHHHHHHHHH-hC---CCEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-----CCCccEEEEec-
Confidence 99999999887 44 8899999999998755443222222466789999999999999976 45689999999
Q ss_pred CCcchhhhcCChhHHHHhhcCCCCceEEcCCeEec
Q 006688 601 WPGAFRTLYGDHERYETTYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 601 ~~~v~~GY~~~~e~t~~~~~~~~~g~yrTGDlgr~ 635 (635)
+++++||+++|+.|.. | .+|||+|||+|++
T Consensus 356 -~~~~~gY~~~~~~t~~-~---~~g~~~TGDl~~~ 385 (501)
T 3ipl_A 356 -ANVMNGYLYPTDLTGT-F---ENGYFNTGDIAEI 385 (501)
T ss_dssp -TTSCSCCSBSTTCCCS-E---ETTEEEEEEEEEE
T ss_pred -cchhhhhCcChhhcch-h---cCCceecCCEEEE
Confidence 9999999999998876 3 3789999999985
No 32
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=1.2e-32 Score=297.94 Aligned_cols=223 Identities=19% Similarity=0.165 Sum_probs=180.5
Q ss_pred CCC-CCcEEEEEccCCCCCCcEEEEccchHHHHHHHH--HHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEE
Q 006688 384 VDA-EDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT--FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVV 460 (635)
Q Consensus 384 ~~~-~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl 460 (635)
..+ +++++|+|||||||.||||+++|+++....... ....++++++|++++.+|++|..+.+..++.++..|+++++
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 455 899999999999999999999999975543222 12346899999999999998777666678889999999998
Q ss_pred ecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCccc
Q 006688 461 FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPI 540 (635)
Q Consensus 461 ~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l 540 (635)
.+. +++..+++.|+++++|+++++|+++..|++..........+++||.+++|||++++++.++|.+.++ +++
T Consensus 162 ~~~----~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~v 234 (436)
T 3qov_A 162 AAA----GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLN---VKA 234 (436)
T ss_dssp CCS----CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHT---SEE
T ss_pred CCC----CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhC---ccE
Confidence 765 4899999999999999999999999999876432111223789999999999999999999999997 889
Q ss_pred cccccccccccc-ccccCCCCCCCCCCCCCCCCCCCeEEEEc-CCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHh
Q 006688 541 SDTWWQTETGGF-MITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT 618 (635)
Q Consensus 541 ~n~YG~TE~~~~-~~~~~~~~~~~~~~siG~pl~g~~v~IvD-~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~ 618 (635)
+|.||+||+++. +..... ....+|.|.+++.++|+| ++++++|.|+.|||+|+| .. .+.
T Consensus 235 ~~~YG~TE~~~~~~~~~~~-----~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~--~~------------~~~ 295 (436)
T 3qov_A 235 YNSFGMTEMNGPGVAFECQ-----EQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTT--LD------------REM 295 (436)
T ss_dssp EEEEEEGGGTEEEEEEECT-----TCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEE--SS------------CCS
T ss_pred EecCcchhhcCCeeEEecC-----CCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEec--cC------------cCC
Confidence 999999999654 322221 122367788899999999 799999999999999999 31 112
Q ss_pred hcCCCCceEEcCCeEec
Q 006688 619 YFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 619 ~~~~~~g~yrTGDlgr~ 635 (635)
+ .++||+|||+|++
T Consensus 296 ~---~~~~y~TGDl~~~ 309 (436)
T 3qov_A 296 M---PLIRYRTRDLTRI 309 (436)
T ss_dssp S---CCCSEEEEEEECE
T ss_pred c---eEEEEEcCCEEEE
Confidence 1 3689999999985
No 33
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=2e-33 Score=295.49 Aligned_cols=203 Identities=19% Similarity=0.157 Sum_probs=169.3
Q ss_pred CCCcEEEEEccCCCCCCcEEEEccchHHHHHHHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCC
Q 006688 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAP 465 (635)
Q Consensus 386 ~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~ 465 (635)
.+|+|||+|||||||.||||+++|++++.++ ......++++++|++++++|++|++|+ ..++.+++.|+++++.+..
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~-~~~~~~~~~~~~d~~l~~~pl~h~~gl-~~~~~~l~~g~~~~~~~~~- 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASA-AMTGKALSLGPGTRALVCLNVGYIAGL-MMLVRGMELDWELTVTEPT- 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHH-HHHHHHTTCCTTCEEEECSCTTSHHHH-HHHHHHHHHTCEEEEECCC-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHH-HHHHHHhCCCCCCEEEEECChHHHHHH-HHHHHHHHhCcEEEecCcc-
Confidence 4789999999999999999999999977655 445557999999999999999999995 5688899999999998642
Q ss_pred CCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcccccccc
Q 006688 466 TYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWW 545 (635)
Q Consensus 466 ~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l~n~YG 545 (635)
++ +++.|+++++|++.++|+++..|++... ...++++||.+++|||++++++.+++.+ ++ ++++|.||
T Consensus 113 --~~---~~~~i~~~~~t~~~~~P~~l~~ll~~~~---~~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~---~~~~~~YG 180 (358)
T 4gs5_A 113 --AN---PLAGLDHADFDFVAMVPMQLQSILENSA---TSGQVDRLGKVLLGGAPVNHALAMQISD-LA---MPVYQSYG 180 (358)
T ss_dssp --SC---TTTTCSSCCCSEEEECHHHHHHHHHCTT---TGGGGGGGCSEEECSSCCCHHHHHHHHT-CS---SCEEEEEE
T ss_pred --cc---HHHHHHHhCCeEEEcChHHHHHhhcccc---ccccCCcceEEEEcccCCCchheecccc-cC---ceEEeccc
Confidence 13 3567899999999999999999998764 3446889999999999999999999876 44 88999999
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCCCeEEEEcCCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHhhcCCCCc
Q 006688 546 QTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETTYFKPFPG 625 (635)
Q Consensus 546 ~TE~~~~~~~~~~~~~~~~~~siG~pl~g~~v~IvD~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~~~~~~~g 625 (635)
+||++..++..... ....+.+|.|.||+.+.+.+ .|||+++| +.. .+|
T Consensus 181 ~TEt~~~~~~~~~~--~~~~g~~~~~~pgv~~~~~~----------~Gel~~~g--~~~------------------~~g 228 (358)
T 4gs5_A 181 MTETVSHVALKALN--GPEASELYVFLPGIQYGVDE----------RGCLHISG--AVT------------------NGQ 228 (358)
T ss_dssp CGGGSSEEEEEECS--STTCCSCEEECTTCEEEECT----------TSEEEEES--GGG------------------TTC
T ss_pred cccccceeeccccc--ccccceeeccCCCeEEEecC----------cCceEEec--ccc------------------cCc
Confidence 99998776654332 24567899999999888743 69999999 311 278
Q ss_pred eEEcCCeEec
Q 006688 626 YYFTGDGCSR 635 (635)
Q Consensus 626 ~yrTGDlgr~ 635 (635)
||||||+|++
T Consensus 229 ~~~TGDlg~~ 238 (358)
T 4gs5_A 229 TVQTNDLVEI 238 (358)
T ss_dssp CEEEEEEEEE
T ss_pred ceecCCcccc
Confidence 9999999985
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.97 E-value=2e-31 Score=288.41 Aligned_cols=224 Identities=19% Similarity=0.129 Sum_probs=175.7
Q ss_pred cCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHH--HHHhcCCCCCcEEEEeCCcc-eecchhHHhHHHhhcCcEEE
Q 006688 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT--FKYAFDYKPSDVYWCTADCG-WITGHSYVTYGPMLNGASVV 459 (635)
Q Consensus 383 ~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~~d~~l~~~~l~-~~~g~~~~i~~~L~~G~~lv 459 (635)
...++++++|+|||||||.||||+++|+++....... ....++++++|++++..|+. |..+ ...++.++..|++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~ 164 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGG-LGAHYGAERAGLTVI 164 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHH-HHHHHHHHHTTCEEE
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccc-hHHHHHHHHcCCEEE
Confidence 3467899999999999999999999999966543221 12357899999999999984 5554 456788999999999
Q ss_pred EecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCcc
Q 006688 460 VFEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCP 539 (635)
Q Consensus 460 l~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~ 539 (635)
+.+. ++++.+++.|+++++|+++++|+++..|++..........+++||.+++|||++++++.+++.+.++ ++
T Consensus 165 ~~~~----~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~ 237 (437)
T 2y27_A 165 PFGG----GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMG---ID 237 (437)
T ss_dssp CCCS----CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT---SE
T ss_pred eCCC----CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHC---cC
Confidence 8764 4899999999999999999999999999875321101112478999999999999999999999887 88
Q ss_pred ccccccccccccc-ccccCCCCCCCCCCCCCCCCCCCeEEEEcC-CCCccCCCcceEEEEecCCCcchhhhcCChhHHHH
Q 006688 540 ISDTWWQTETGGF-MITPLPGAWPQKPGSATFPFFGVQPVIVDE-KGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYET 617 (635)
Q Consensus 540 l~n~YG~TE~~~~-~~~~~~~~~~~~~~siG~pl~g~~v~IvD~-~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~ 617 (635)
++|.||+||+++. +...... ....++.|.+++.++|+|+ +|+++|.|+.|||+|+| .. .+
T Consensus 238 v~~~YG~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~--~t------------~~ 299 (437)
T 2y27_A 238 AVDIYGLSEVMGPGVASECVE----TKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTS--LT------------KE 299 (437)
T ss_dssp EEEEEEETTTTEEEEEECCTT----TCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEE--SS------------CS
T ss_pred EEecCCchhhcCCeeEEecCC----CCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEec--CC------------cC
Confidence 9999999998543 3322221 1112566778999999994 69999999999999999 21 12
Q ss_pred hhcCCCCceEEcCCeEec
Q 006688 618 TYFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 618 ~~~~~~~g~yrTGDlgr~ 635 (635)
.| .++||+|||+|++
T Consensus 300 ~~---~~~~y~TGDl~~~ 314 (437)
T 2y27_A 300 AL---PIIRYRTRDLTRL 314 (437)
T ss_dssp SS---CCCSEEEEEEECE
T ss_pred Cc---hhheeecCCEEEE
Confidence 22 2689999999975
No 35
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.97 E-value=2.5e-31 Score=288.12 Aligned_cols=225 Identities=20% Similarity=0.145 Sum_probs=175.4
Q ss_pred cCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHH--HHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEE
Q 006688 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT--FKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVV 460 (635)
Q Consensus 383 ~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl 460 (635)
...++++++|+|||||||.||||+++|+++....... ....++++++|++++..|+++..+....++.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 3467899999999999999999999999965543221 12257899999999999995433334567889999999998
Q ss_pred ecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEecCCCCCHHHHHHHHHHhCCCCccc
Q 006688 461 FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPI 540 (635)
Q Consensus 461 ~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~gGe~l~~~l~~~~~~~~~~~~~~l 540 (635)
.+. ++++.+++.|+++++|+++++|+++..|++..........+++||.+++|||++++++.+++.+.++ +++
T Consensus 168 ~~~----~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g---~~v 240 (443)
T 2y4o_A 168 MSG----GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVG---IDA 240 (443)
T ss_dssp CCS----CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHT---CEE
T ss_pred CCC----CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhC---cCE
Confidence 765 3899999999999999999999999999875321101112479999999999999999999999987 889
Q ss_pred cccccccccccc-ccccCCCCCCCCCCCCCCCCCCCeEEEEc-CCCCccCCCcceEEEEecCCCcchhhhcCChhHHHHh
Q 006688 541 SDTWWQTETGGF-MITPLPGAWPQKPGSATFPFFGVQPVIVD-EKGVEIEGECSGYLCIKSSWPGAFRTLYGDHERYETT 618 (635)
Q Consensus 541 ~n~YG~TE~~~~-~~~~~~~~~~~~~~siG~pl~g~~v~IvD-~~g~~vp~g~~GEL~i~g~~~~v~~GY~~~~e~t~~~ 618 (635)
+|.||+||+++. +...... .....+.|.+++.++|+| ++|+++|.|+.|||+|+| .. .+.
T Consensus 241 ~~~YG~TE~~g~~~~~~~~~----~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~--~t------------~~~ 302 (443)
T 2y4o_A 241 LDIYGLSEVMGPGVACECVE----TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTS--LT------------KEA 302 (443)
T ss_dssp EEEEEETTTTEEEEEEECTT----TCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEE--SS------------CSS
T ss_pred EeccCchhhcCCeEEeccCC----CCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeC--CC------------ccc
Confidence 999999998543 3322221 111245567899999999 469999999999999999 21 122
Q ss_pred hcCCCCceEEcCCeEec
Q 006688 619 YFKPFPGYYFTGDGCSR 635 (635)
Q Consensus 619 ~~~~~~g~yrTGDlgr~ 635 (635)
| ..+||+|||+|++
T Consensus 303 ~---p~~~y~TGDl~~~ 316 (443)
T 2y4o_A 303 M---PVIRYRTRDLTAL 316 (443)
T ss_dssp S---CCSSEEEEEEECE
T ss_pred C---hhheeecCCEEEE
Confidence 2 2679999999975
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=2.2e-31 Score=281.54 Aligned_cols=199 Identities=16% Similarity=0.121 Sum_probs=161.1
Q ss_pred cCCCCCcEEEEEccCCCCCCcEEEEccchHHHHHHHH--HHHhcCCCCCcEEEEeCCc-ceecchhHHhHHHhhcCcEEE
Q 006688 383 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHTATT--FKYAFDYKPSDVYWCTADC-GWITGHSYVTYGPMLNGASVV 459 (635)
Q Consensus 383 ~~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~~~~--~~~~~~~~~~d~~l~~~~l-~~~~g~~~~i~~~L~~G~~lv 459 (635)
...++++++|+|||||||.||||+++|+++....... ....++++++|++++.+|+ .|+.++ ...+.++..|+ ++
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~-~~~~~~~~~G~-~v 164 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGA-INKERALRLGG-MF 164 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHH-HHHHHHHHTTS-CE
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhH-HHHHHHHHcCC-EE
Confidence 3478899999999999999999999999966554321 1234678899999999999 888885 45666789999 55
Q ss_pred EecCCCCCCChh-----------------------HHHHHHHHcCCcEEEecHHHHHHHHhcCccccccCCCCCceEEEe
Q 006688 460 VFEGAPTYPDSG-----------------------RSWDIVDKYKVTIFYTAPTLVRSLMRDGNEYVTRYSRKSLRVLGS 516 (635)
Q Consensus 460 l~~~~~~~~d~~-----------------------~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~~~l~sLr~v~~ 516 (635)
+..+ ++|. .+++.|+++++|++.++|+++..|++... ....++++||.+++
T Consensus 165 ~~~~----~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~--~~~~~~~~lr~i~~ 238 (369)
T 3hgu_A 165 FSID----IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPE--VVLQMKQSLAQITL 238 (369)
T ss_dssp ECCC----CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHH--HHHHHHHHCSEEEE
T ss_pred ECcc----CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhh--hhccccCCeeEEEE
Confidence 5433 4666 78889999999999999999999987632 12345678999999
Q ss_pred cCCCCCHHHHHHHH-HHhCCCCcccccccccccccccccccCCCCCCCCCC-CCCCC------CCCCeEEEEcC-CCCcc
Q 006688 517 VGEPINPSAWRWFF-NVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPG-SATFP------FFGVQPVIVDE-KGVEI 587 (635)
Q Consensus 517 gGe~l~~~l~~~~~-~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~-siG~p------l~g~~v~IvD~-~g~~v 587 (635)
|||++++++.+++. +.+| +++++|.||+||+++++... +. ++|+| +++++++|+|+ +++++
T Consensus 239 gGe~l~~~~~~~~~~~~~p--~~~v~~~YG~TE~~~~~~~~--------~~~~~G~~~~~~~~~~~~~v~ivD~~~g~~v 308 (369)
T 3hgu_A 239 GGTELNLDEIKFIASEILP--DCEFSASYGSTSALGVSRSL--------LITSESQQVIYDSFSPFITYDVVDSITAQTV 308 (369)
T ss_dssp ESSCCCHHHHHHHHHHTCT--TSEEEEEEEEGGGTEEEEEC--------CBCTTCSSCEEECCTTTEEEEEECTTTCSBC
T ss_pred CCccCCHHHHHHHHHHhCC--CcEEEcccCchhhhcceecc--------ccccCCCcccccCCCCCeEEEEECCCCCcCC
Confidence 99999999999999 8885 48999999999988655321 12 58999 99999999997 99999
Q ss_pred CCCcceEEEEec
Q 006688 588 EGECSGYLCIKS 599 (635)
Q Consensus 588 p~g~~GEL~i~g 599 (635)
|.|++|||+|++
T Consensus 309 p~G~~GEl~vt~ 320 (369)
T 3hgu_A 309 EYGERGNVIVTH 320 (369)
T ss_dssp CTTCEEEEEEEE
T ss_pred CCCCceEEEEEE
Confidence 999999999998
No 37
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=96.13 E-value=0.014 Score=63.66 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=25.3
Q ss_pred CCCCCcEEEEEccCCC-CCCcEEEEccchH
Q 006688 384 VDAEDPLFLLYTSGST-GKPKGVLHTTGGY 412 (635)
Q Consensus 384 ~~~~d~a~Ii~TSGTT-G~PKgV~~th~~l 412 (635)
..++.+.+..-||||| |++|-+.+|...+
T Consensus 90 L~~~pi~~F~~SSGTT~g~~K~IP~T~e~l 119 (581)
T 4eql_A 90 ISARTITGFLLSSGTSGGAQKMMPWNNKYL 119 (581)
T ss_dssp TCSSCCCEEEEEEEEETTEEEEEEECHHHH
T ss_pred cCCCCCCeEEeCCCCCCCCccccccCHHHH
Confidence 4577788999999999 7899999999874
No 38
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=95.24 E-value=0.057 Score=58.98 Aligned_cols=30 Identities=20% Similarity=0.143 Sum_probs=25.9
Q ss_pred CCCCCcEEEEEccCCC-CCCcEEEEccchHH
Q 006688 384 VDAEDPLFLLYTSGST-GKPKGVLHTTGGYM 413 (635)
Q Consensus 384 ~~~~d~a~Ii~TSGTT-G~PKgV~~th~~l~ 413 (635)
..++.+.++.-||||| |+||-|.+|...+-
T Consensus 96 l~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~ 126 (609)
T 4b2g_A 96 LSAHPISEFLTSSGTSAGERKLMPTIQEELD 126 (609)
T ss_dssp SCSSCCCEEEEEEEEETTEEEEEEECTTHHH
T ss_pred cCCCCCCeEEeCCCCCCCCceeeecCHHHHH
Confidence 3577788999999999 88999999999743
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=94.68 E-value=0.093 Score=57.02 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=25.1
Q ss_pred CCCCCcEEEEEccCCC-CCCcEEEEccchH
Q 006688 384 VDAEDPLFLLYTSGST-GKPKGVLHTTGGY 412 (635)
Q Consensus 384 ~~~~d~a~Ii~TSGTT-G~PKgV~~th~~l 412 (635)
..++.+.+..-||||| |++|-+.+|...+
T Consensus 95 L~~~pi~~f~~SSGTT~gk~K~IP~T~~~l 124 (581)
T 4epl_A 95 LTGHPVPAISLSSGTSQGRPKFIPFTDELM 124 (581)
T ss_dssp SSSSCCSEEEEEEEEETTEEEEEEECHHHH
T ss_pred cCCCCcceEEecCCCCCCCccccccCHHHH
Confidence 4567788999999999 8899999998874
No 40
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=94.16 E-value=0.0031 Score=68.67 Aligned_cols=57 Identities=12% Similarity=0.186 Sum_probs=51.7
Q ss_pred CCcccchhhhhhccc-CCcCCCcccCCChhhhhccCCCChHHHHHHHhhhccChhhHHHHH
Q 006688 104 AGKISRLNAVILGEA-LSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADI 163 (635)
Q Consensus 104 ~~~~~L~~~v~~~~~-~~~~~~~~~y~~~~f~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~ 163 (635)
.++|||++.+.+.++ +.+. +.|++++|+++++++++++|.++|++++++|+.+++++
T Consensus 460 ~~~~~L~l~~~~~~~~l~~~---~~y~~~~~~~~~i~~l~~~~~~lL~~l~~~p~~~l~~l 517 (520)
T 2jgp_A 460 HAKFDLTFSATEEREEMTIG---VEYSTSLFTRETMERFSRHFLTIAASIVQNPHIRLGEI 517 (520)
T ss_dssp BCSSSEEEEEEECSSCEEEE---EEEETTTCCHHHHHHHHHHHHHHHHHHHHCTTCBGGGC
T ss_pred ceeeeeEEEEEECCCeEEEE---EEEChhhCCHHHHHHHHHHHHHHHHHHHhCccCchhhc
Confidence 789999999987655 6666 99999999999999999999999999999999988776
No 41
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=92.04 E-value=0.0037 Score=66.25 Aligned_cols=56 Identities=5% Similarity=0.036 Sum_probs=48.8
Q ss_pred CCcccchhhhhh--cccCCcCCCcccCCChhhhhccCCCChHHHHHHHhhhccC---hhhHHHHH
Q 006688 104 AGKISRLNAVIL--GEALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVED---PAGFWADI 163 (635)
Q Consensus 104 ~~~~~L~~~v~~--~~~~~~~~~~~~y~~~~f~~~~~~~~~~~~~~ll~~~~~~---p~~~~~~~ 163 (635)
..+ ||.+.+.+ ++++.+. +.|++++|+++++.+++++|.++|++++++ |+.+++++
T Consensus 358 ~~~-~l~l~v~~~~~~~l~~~---~~y~~~~~~~~~i~~l~~~~~~~l~~l~~~~~~p~~~l~~l 418 (436)
T 1l5a_A 358 SAE-GINFTFRGSPQHELCLD---ITADLASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVARL 418 (436)
T ss_dssp CCC-SEEEEEEECTTSCEEEE---EEEETTTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHH
T ss_pred Ccc-ceEEEEEecCCCcEEEE---EEeChhhCCHHHHHHHHHHHHHHHHHHHhccCCCcccHHHH
Confidence 344 88888873 3346666 999999999999999999999999999999 99999999
No 42
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=91.78 E-value=0.015 Score=62.78 Aligned_cols=58 Identities=9% Similarity=-0.103 Sum_probs=42.7
Q ss_pred CCCccc---chhhhhhccc-CCcCCCcccCCChhhhhccCCCChHHHHHHHhhhccChhhHHHHHH
Q 006688 103 GAGKIS---RLNAVILGEA-LSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGFWADIA 164 (635)
Q Consensus 103 ~~~~~~---L~~~v~~~~~-~~~~~~~~~y~~~~f~~~~~~~~~~~~~~ll~~~~~~p~~~~~~~~ 164 (635)
++++|| |.+.+...++ +.+. +.|++++| ++++++++++|.++|++++++|+.+++++.
T Consensus 408 ~~~~~~~~~l~l~v~~~~~~l~~~---~~y~~~l~-~~~i~~l~~~~~~~L~~~~~~p~~~l~~l~ 469 (493)
T 4hvm_A 408 GTDTWDGTTTDLSVGELGEDMVIV---LDQRRTHP-AGGGSALLDGLDAAMAQAVADPSAPLPHST 469 (493)
T ss_dssp CCCCCCCCCEEEEEEEETTEEEEE---EEECC--------CHHHHHHHHHHHHHHHCTTSBCCC--
T ss_pred cccccCCcceEEEEEEeCCeEEEE---EEEccccC-HHHHHHHHHHHHHHHHHHHhCCCCccccCC
Confidence 446788 8888877655 6667 99999999 999999999999999999999999998884
No 43
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=89.97 E-value=0.028 Score=59.87 Aligned_cols=54 Identities=7% Similarity=0.025 Sum_probs=47.0
Q ss_pred CCCcccchhhhhhccc-CCcCCCcccCCChhhhhccCCCChHHHHHHHhhhccChhhH
Q 006688 103 GAGKISRLNAVILGEA-LSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGF 159 (635)
Q Consensus 103 ~~~~~~L~~~v~~~~~-~~~~~~~~~y~~~~f~~~~~~~~~~~~~~ll~~~~~~p~~~ 159 (635)
+.++|+|.+.+...++ +.+. +.|++++|+++++++++++|.++|++++++|+..
T Consensus 406 ~~~~~~l~~~~~~~~~~l~~~---~~y~~~~~~~~~i~~l~~~~~~~L~~l~~~~~~~ 460 (466)
T 2xhg_A 406 SEVYTALNITGLIEGGELVLT---FSYSSEQYREESIQQLSQSYQKHLLAIIAHCLQS 460 (466)
T ss_dssp SBCCCSEEEEEEEETTEEEEE---EEEETTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcceeEEEEEEEECCEEEEE---EEEChhhCCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4468999998876544 7777 9999999999999999999999999999998765
No 44
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=85.60 E-value=4.4 Score=42.23 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=74.7
Q ss_pred CCCceEEE-EEcCCCC--ccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--chHHHHHHHHHHhCCeEEecC
Q 006688 214 LGDKVAIY-WEANDPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPML--MELPIAMLACARIGAVHSVVF 288 (635)
Q Consensus 214 ~pd~~Al~-~~~~~~~--~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns--~e~iva~LA~l~~Ga~~vpld 288 (635)
.++.+|.+ +..+.++ ....+|.+.+...+..++..+...|+.++|++...++-+ ...+..+++.+..|+..++++
T Consensus 88 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 167 (437)
T 2y27_A 88 PQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFG 167 (437)
T ss_dssp CGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCC
T ss_pred ChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCC
Confidence 45666644 3322222 235689999998888888888889999999999888763 333456788899999988876
Q ss_pred CCCCHHHHHHHHHhcCCeEEEEeCC
Q 006688 289 AGFSSDSLAQRIMDCKPKVVITSNA 313 (635)
Q Consensus 289 ~~~~~~~l~~il~~~~~~~ii~~~~ 313 (635)
. ...+++...+++.++.+++....
T Consensus 168 ~-~~~~~~~~~i~~~~~t~l~~~Ps 191 (437)
T 2y27_A 168 G-GQTEKQVQLIQDFRPDIIMVTPS 191 (437)
T ss_dssp S-CCHHHHHHHHHHHCCSEEEECHH
T ss_pred C-CCHHHHHHHHHHhCCCEEEECHH
Confidence 5 47889999999999999887654
No 45
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=85.17 E-value=4.7 Score=42.10 Aligned_cols=99 Identities=15% Similarity=0.142 Sum_probs=74.6
Q ss_pred CCCceEEE-EEcCCCCc--cEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--chHHHHHHHHHHhCCeEEecC
Q 006688 214 LGDKVAIY-WEANDPGV--DATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPML--MELPIAMLACARIGAVHSVVF 288 (635)
Q Consensus 214 ~pd~~Al~-~~~~~~~~--~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns--~e~iva~LA~l~~Ga~~vpld 288 (635)
.++.+|.+ +..+.++. ...+|.+.+...+..++..+...|+.++|++..+++-+ ...+..+++.+..|+..++++
T Consensus 90 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 169 (443)
T 2y4o_A 90 PREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMS 169 (443)
T ss_dssp CGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCC
T ss_pred ChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECC
Confidence 45666644 33322222 34689999998888888888889999999999888764 334556788899999988876
Q ss_pred CCCCHHHHHHHHHhcCCeEEEEeCC
Q 006688 289 AGFSSDSLAQRIMDCKPKVVITSNA 313 (635)
Q Consensus 289 ~~~~~~~l~~il~~~~~~~ii~~~~ 313 (635)
+. ..+++...+++.++.+++....
T Consensus 170 ~~-~~~~~~~~i~~~~~t~l~~~Ps 193 (443)
T 2y4o_A 170 GG-QTEKQVQLIRDFEPKIILVTPS 193 (443)
T ss_dssp SC-CHHHHHHHHHHHCCSEEEECHH
T ss_pred CC-CHHHHHHHHHHhCCcEEEECHH
Confidence 64 7888999999999999887654
No 46
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=83.96 E-value=5.8 Score=41.31 Aligned_cols=97 Identities=15% Similarity=0.051 Sum_probs=74.4
Q ss_pred CceEEEE-EcCCCC--ccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--chHHHHHHHHHHhCCeEEecCCC
Q 006688 216 DKVAIYW-EANDPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPML--MELPIAMLACARIGAVHSVVFAG 290 (635)
Q Consensus 216 d~~Al~~-~~~~~~--~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns--~e~iva~LA~l~~Ga~~vpld~~ 290 (635)
+.+|.+. ..+.++ ....+|.+.+...+..+++.+...|+.++|++...++-+ ...+..+++.+..|+..++.++.
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~ 165 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAAG 165 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCSC
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCCC
Confidence 6777653 222212 245689999999998888888889999999999988753 34455678889999998887654
Q ss_pred CCHHHHHHHHHhcCCeEEEEeCC
Q 006688 291 FSSDSLAQRIMDCKPKVVITSNA 313 (635)
Q Consensus 291 ~~~~~l~~il~~~~~~~ii~~~~ 313 (635)
..+++...+++.++.+++....
T Consensus 166 -~~~~~~~~i~~~~~t~~~~~P~ 187 (436)
T 3qov_A 166 -NSKRQIKFISDFKTTALHAIPS 187 (436)
T ss_dssp -CHHHHHHHHHHHTCCEEECCHH
T ss_pred -CHHHHHHHHHHHCCCEEEECHH
Confidence 6788999999999999886544
No 47
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=77.08 E-value=8.6 Score=41.45 Aligned_cols=103 Identities=12% Similarity=0.130 Sum_probs=74.9
Q ss_pred CCCcEEEEEccCCCCCCcEEEEccchHHHHH---HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEec
Q 006688 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 462 (635)
Q Consensus 386 ~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~ 462 (635)
|+.+|.+.+..+.++ ..+|.+.+.... ...+. ..++.++|++...++-+... +..+|+++..|+..+..+
T Consensus 34 p~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Gav~vpl~ 106 (550)
T 3rix_A 34 ALVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMK-RYGLNTNHRIVVCSENSLQF--FMPVLGALFIGVAVAPAN 106 (550)
T ss_dssp HTSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHH-HHTCCTTCEEEEECSSCTTT--HHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHH-HhCCCCCCEEEEEcCCcccH--HHHHHHHHHcCCEEeecC
Confidence 556666544444333 468888754332 22333 46899999999998877654 567889999999999886
Q ss_pred CCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHhc
Q 006688 463 GAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMRD 498 (635)
Q Consensus 463 ~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~ 498 (635)
.. ...+++...++..++.+++..+..+..+...
T Consensus 107 ~~---~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 139 (550)
T 3rix_A 107 DI---YNERELLNSMNISQPTVVFVSKKGLQKILNV 139 (550)
T ss_dssp TT---CCHHHHHHHHHHHCCSEEEECGGGHHHHHHH
T ss_pred Cc---CCHHHHHHHHHhcCCeEEEEcHHHHHHHHHH
Confidence 53 4889999999999999999988877766543
No 48
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=74.77 E-value=15 Score=39.04 Aligned_cols=97 Identities=10% Similarity=0.013 Sum_probs=72.1
Q ss_pred CCCCcEEEEEccCCCCCCcEEEEccchHHHHH---HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEe
Q 006688 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (635)
Q Consensus 385 ~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~ 461 (635)
.|+.+|++. .+..+|.+.+.... ...+. ..++.++|++...++-+... +..+++++..|+..+..
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~Ga~~vpl 86 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLL-RDGVHTGDRVAILSQNCSEM--IELIGAVALIGAILLPV 86 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSCHHH--HHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHHH--HHHHHHHHHhCCEEEec
Confidence 477787764 12568888754433 22333 46899999999999877654 56788999999999998
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHH
Q 006688 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLM 496 (635)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~ 496 (635)
+.. ...+++..++++.++.+++..+.....+.
T Consensus 87 ~~~---~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 118 (509)
T 3ivr_A 87 NYR---LNADEIAFVLGDGAPSVVVAGTDYRDIVA 118 (509)
T ss_dssp CTT---SCHHHHHHHHHHHCEEEEEECSTTHHHHH
T ss_pred CCC---CCHHHHHHHHHhcCceEEEECcchhhhHH
Confidence 753 48899999999999999998877665533
No 49
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=74.11 E-value=26 Score=37.82 Aligned_cols=104 Identities=11% Similarity=-0.017 Sum_probs=74.4
Q ss_pred CCCCcEEEEEccCCCCCCcEEEEccchHHHHH---HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEe
Q 006688 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (635)
Q Consensus 385 ~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~ 461 (635)
.|+.+|++.... .| +...+|.+.+.... ...+...+++.++|++...++-+... +..+|+++..|+..+..
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Ga~~vpl 129 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEW--WLVILGCIRAGLIFMPG 129 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHH--HHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHH--HHHHHHHHHcCeEEEec
Confidence 577788765421 12 24678888754433 23333223889999999998877654 56788999999999988
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHh
Q 006688 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR 497 (635)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~ 497 (635)
+.. ..++++..++++.++.+++..+.....+..
T Consensus 130 ~~~---~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 162 (570)
T 3c5e_A 130 TIQ---MKSTDILYRLQMSKAKAIVAGDEVIQEVDT 162 (570)
T ss_dssp CTT---CCHHHHHHHHHHHTCSEEEEETTTHHHHHH
T ss_pred CCC---CCHHHHHHHHHhcCCeEEEechHHHHHHHH
Confidence 653 378999999999999999988776665543
No 50
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=73.69 E-value=29 Score=37.11 Aligned_cols=101 Identities=9% Similarity=-0.041 Sum_probs=73.3
Q ss_pred CCCCcEEEEEccCCCCCCcEEEEccchHHHHH---HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEe
Q 006688 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (635)
Q Consensus 385 ~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~ 461 (635)
.|+.+|++....+ .+..+|.+.+.... ...+. ..++.++|++...++-+... +..+|+++..|+..+..
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Gav~vpl 102 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLR-ALGVGVGDRVATLGFNHFRH--LEAYFAVPGMGAVLHTA 102 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcHHH--HHHHHHHHhcCcEEEec
Confidence 4677777543211 34568888754332 23333 47899999999998877654 56788999999999988
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHH
Q 006688 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLM 496 (635)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~ 496 (635)
+.. ..++++..++++.++.+++..+.....+.
T Consensus 103 ~~~---~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 134 (541)
T 1v25_A 103 NPR---LSPKEIAYILNHAEDKVLLFDPNLLPLVE 134 (541)
T ss_dssp CTT---SCHHHHHHHHHHHTCSEEEECGGGHHHHH
T ss_pred Ccc---cCHHHHHHHHHhCCCcEEEEChhHHHHHH
Confidence 753 37899999999999999999887665543
No 51
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=73.60 E-value=40 Score=36.05 Aligned_cols=105 Identities=10% Similarity=-0.103 Sum_probs=74.9
Q ss_pred CCCCcEEEEEccCC-CCCCcEEEEccchHHHHH---HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEE
Q 006688 385 DAEDPLFLLYTSGS-TGKPKGVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVV 460 (635)
Q Consensus 385 ~~~d~a~Ii~TSGT-TG~PKgV~~th~~l~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl 460 (635)
.|+.+|++....+. .+. .-.+|.+.+.... ...+. ..++.++|++...++-+..+ +..+|+++..|+..+.
T Consensus 32 ~p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vp 106 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGIS-RKGVRKGEHVGVCIPNSIDY--VMTIYALWRVAATPVP 106 (549)
T ss_dssp HTTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEE
T ss_pred CCCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHH--HHHHHHHHHhCCEEEc
Confidence 47788876553221 122 2457777754332 22333 46899999999999887654 5678899999999998
Q ss_pred ecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHh
Q 006688 461 FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR 497 (635)
Q Consensus 461 ~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~ 497 (635)
.+.. ...+++..++++.++.++...+.....+..
T Consensus 107 l~~~---~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 107 INPM---YKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp CCTT---CCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred cCCC---CCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 8753 488999999999999999998877666544
No 52
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=67.60 E-value=39 Score=35.22 Aligned_cols=108 Identities=15% Similarity=0.101 Sum_probs=73.9
Q ss_pred CCCCcEEEEEcc--CCCCCCcEEEEccchHHHHHHHHHH--HhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEE
Q 006688 385 DAEDPLFLLYTS--GSTGKPKGVLHTTGGYMVHTATTFK--YAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVV 460 (635)
Q Consensus 385 ~~~d~a~Ii~TS--GTTG~PKgV~~th~~l~~~~~~~~~--~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl 460 (635)
.|+.+|++.... +.+| ....+|.+.+......... ...+. ++|++...++-+... +..+|+++..|+..+.
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~--~~~~lA~~~~G~v~vp 111 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY--VVAFLGALQAGRIAVP 111 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH--HHHHHHHHHTTCEEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH--HHHHHHHHHhCcEEEe
Confidence 578888776542 2222 3467888886543322221 12454 899999888877654 5678899999999998
Q ss_pred ecCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHHh
Q 006688 461 FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLMR 497 (635)
Q Consensus 461 ~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~~ 497 (635)
.+........+++..++++.++.+++..+.....+..
T Consensus 112 l~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 112 LSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp ECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred eCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 8642111256889999999999999998877766654
No 53
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=62.86 E-value=31 Score=38.13 Aligned_cols=98 Identities=12% Similarity=0.036 Sum_probs=70.6
Q ss_pred CCCCcEEEEEccCCCCCCcEEEEccchHHHHH---HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEe
Q 006688 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (635)
Q Consensus 385 ~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~ 461 (635)
.|+.+|++... ..+| ....+|.+.+.... ...+....++.++|++..+++.+... +..+++++..|+..+..
T Consensus 95 ~pd~~Al~~~~-~~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~--v~a~lA~~~~Gav~vpl 169 (663)
T 1ry2_A 95 TPNKKAIIFEG-DEPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEA--IITLLAISRIGAIHSVV 169 (663)
T ss_dssp CTTSEEEEEEC-SSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHH--HHHHHHHHHTTCEEEEC
T ss_pred CCCceEEEEEc-CCCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH--HHHHHHHHHcCCEEEee
Confidence 47778876442 2222 23568888754433 22332246899999999999988654 56788999999999988
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEecHH
Q 006688 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPT 490 (635)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps 490 (635)
+.. +.++++...|++.++.+++..+.
T Consensus 170 ~~~---~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 170 FAG---FSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp CTT---SCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCC---CCHHHHHHHHHhcCCeEEEEccc
Confidence 753 48899999999999999887653
No 54
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=62.08 E-value=43 Score=35.26 Aligned_cols=98 Identities=10% Similarity=0.055 Sum_probs=69.4
Q ss_pred CCCCcEEEEEccCCCCCCcEEEEccchHHHHH---HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEe
Q 006688 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (635)
Q Consensus 385 ~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~ 461 (635)
.|+.+|++.. . ++..+|++.+.... ...+. ..++.++|++...++-+... +..+++++..|+..+..
T Consensus 15 ~p~~~a~~~~---~----~~~~~Ty~el~~~~~~~A~~L~-~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl 84 (504)
T 1t5h_X 15 APDHCALAVP---A----RGLRLTHAELRARVEAVAARLH-ADGLRPQQRVAVVAPNSADV--VIAILALHRLGAVPALL 84 (504)
T ss_dssp CTTSEEEEET---T----TTEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSCHHH--HHHHHHHHHHTCEEEEE
T ss_pred CCCceEEEEc---C----CCceeEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHHH--HHHHHHHHHhCcEEEec
Confidence 4677777642 1 12568888754332 22333 46899999999998877654 56788999999999988
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEe--cHHHHHHH
Q 006688 462 EGAPTYPDSGRSWDIVDKYKVTIFYT--APTLVRSL 495 (635)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vt~l~~--~Ps~l~~l 495 (635)
+.. ..++++..++++.+++.+.. .+.....+
T Consensus 85 ~~~---~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 85 NPR---LKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp CTT---SCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred CCc---cChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 754 37899999999999999887 66555544
No 55
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=61.32 E-value=30 Score=38.09 Aligned_cols=96 Identities=13% Similarity=-0.020 Sum_probs=69.4
Q ss_pred CCCCcEEEEEccCCCCCCcEEEEccchHHHHH---HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEe
Q 006688 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (635)
Q Consensus 385 ~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~ 461 (635)
.|+.+|++.. +..+| ....+|.+.+.... ...+. ..++.++|++..+++.+... +..+++++..|+..+..
T Consensus 89 ~pd~~Al~~~-~~~~~--~~~~lTY~eL~~~v~~lA~~L~-~~Gv~~Gd~V~i~~~~~~e~--vva~lA~~~~Gav~vpl 162 (652)
T 1pg4_A 89 NGDRTAIIWE-GDDTS--QSKHISYRELHRDVCRFANTLL-DLGIKKGDVVAIYMPMVPEA--AVAMLACARIGAVHSVI 162 (652)
T ss_dssp HTTSEEEEEE-CSSTT--CEEEEEHHHHHHHHHHHHHHHH-HHTCCTTCEEEEECCSSHHH--HHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEE-cCCCC--ceeEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCHHH--HHHHHHHHHcCcEEEec
Confidence 4677877643 22222 24568888754332 23333 46899999999999888654 56788999999999988
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEecH
Q 006688 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAP 489 (635)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vt~l~~~P 489 (635)
+.. +.++++...+++.++.+++...
T Consensus 163 ~~~---~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 163 FGG---FSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp CTT---SCHHHHHHHHHHHTCSEEEEES
T ss_pred CCC---CCHHHHHHHHHhcCCCEEEEcC
Confidence 753 4889999999999999887653
No 56
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=60.01 E-value=35 Score=36.86 Aligned_cols=95 Identities=14% Similarity=0.050 Sum_probs=70.0
Q ss_pred CCCCcEEEEEccCCCCCCcEEEEccchHHHHH---HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEe
Q 006688 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (635)
Q Consensus 385 ~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~ 461 (635)
.|+.+|++.... .| ....+|.+.+.... +..+. ..+++++|++...++-+... +..+|+++..|+..+..
T Consensus 69 ~pd~~Al~~~~~--~g--~~~~~Ty~eL~~~~~~~A~~L~-~~Gv~~Gd~V~l~~~~~~e~--~~~~lA~~~~Gav~vpl 141 (580)
T 3etc_A 69 SPEKLAMIWCDD--YG--NEKIFTFKDLKYYSDKAANFFV-KHGIGKGDYVMLTLKSRYDF--WYCMLGLHKLGAIAVPA 141 (580)
T ss_dssp CTTCEEEEEEES--SS--CEEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECTTCTHH--HHHHHHHHHHTCEEEEC
T ss_pred CCCCEEEEEEcC--CC--CEeEEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHHH--HHHHHHHHhCCEEEEeC
Confidence 588888876532 12 34678888754332 22333 46899999999999877654 56788999999999987
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEecH
Q 006688 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAP 489 (635)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vt~l~~~P 489 (635)
+.. ..++++...+++.++.++...+
T Consensus 142 ~~~---~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 142 THM---LKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp CTT---CCHHHHHHHHHHHTCCEEEEES
T ss_pred Ccc---CCHHHHHHHHHhcCCCEEEEec
Confidence 653 4889999999999999988754
No 57
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=59.20 E-value=44 Score=35.95 Aligned_cols=96 Identities=13% Similarity=0.016 Sum_probs=70.1
Q ss_pred CCCCcEEEEEccCCCCCCcEEEEccchHHHHH---HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEe
Q 006688 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (635)
Q Consensus 385 ~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~ 461 (635)
.|+.+|++. . +-.+|.+.+.... ...+. ..++.++|++...++-+... +..+|+++..|+..+..
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~e~--~~~~lA~~~~Gav~vpl 119 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFI-EKGIGKDTLVGIMMEKSIDL--FIGILAVLKAGGAYVPI 119 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCHHH--HHHHHHHHHhCCEEEEe
Confidence 467777753 1 2468888754332 22233 46899999999998877654 56788999999999988
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHH
Q 006688 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSL 495 (635)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l 495 (635)
+.. ..++++..++++.++.+++..+.....+
T Consensus 120 ~~~---~~~~~l~~il~~~~~~~li~~~~~~~~~ 150 (563)
T 1amu_A 120 DIE---YPKERIQYILDDSQARMLLTQKHLVHLI 150 (563)
T ss_dssp CTT---SCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CCC---CcHHHHHHHHHhcCCCEEEEcCchhhhh
Confidence 753 3789999999999999999887655443
No 58
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=58.84 E-value=31 Score=36.78 Aligned_cols=98 Identities=11% Similarity=0.102 Sum_probs=70.7
Q ss_pred CCCCcEEEEEccCCCCCCcEEEEccchHHHHH---HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEe
Q 006688 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (635)
Q Consensus 385 ~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~ 461 (635)
.|+.+|++. +.+| -.+|.+.+.... ...+. ..++.++|++...++-+..+ +..+++++..|+..+..
T Consensus 35 ~p~~~a~~~---~~~~----~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~~~--~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 35 HSSKPCLIN---GANG----DVYTYADVELTARRVASGLN-KIGIQQGDVIMLFLPSSPEF--VLAFLGASHRGAIITAA 104 (536)
T ss_dssp STTSEEEEE---TTTC----CEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHHH--HHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEE---CCCC----CEEEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcHHH--HHHHHHHHHhCCEEecc
Confidence 577787653 2222 357888754332 22333 47899999999998887654 56788999999999988
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHH
Q 006688 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSL 495 (635)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l 495 (635)
+.. ..++++..++++.++.++...+.....+
T Consensus 105 ~~~---~~~~~l~~~l~~~~~~~~i~~~~~~~~~ 135 (536)
T 3ni2_A 105 NPF---STPAELAKHAKASRAKLLITQACYYEKV 135 (536)
T ss_dssp CTT---CCHHHHHHHHHHHTEEEEEECGGGTHHH
T ss_pred CCC---CCHHHHHHHHHhcCCEEEEEChHHHHHH
Confidence 653 4889999999999999998877554443
No 59
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=58.83 E-value=24 Score=35.52 Aligned_cols=98 Identities=8% Similarity=0.049 Sum_probs=65.4
Q ss_pred CCCceEEEE-EcCCCC--ccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCc--hHHHHHHHHHHhCCeEEecC
Q 006688 214 LGDKVAIYW-EANDPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLM--ELPIAMLACARIGAVHSVVF 288 (635)
Q Consensus 214 ~pd~~Al~~-~~~~~~--~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~--e~iva~LA~l~~Ga~~vpld 288 (635)
.++.+|.+. ..+.++ ....+|.+.+...+..++..+...|+.++|++..+++-+. --+...++.+..|+.+++.+
T Consensus 89 ~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~~ 168 (369)
T 3hgu_A 89 PADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSID 168 (369)
T ss_dssp CTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECCC
T ss_pred CccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECcc
Confidence 355555543 322222 2346799999888887777778889999999999888632 22344455589999666644
Q ss_pred CCCCHH-----------------------HHHHHHHhcCCeEEEEeCC
Q 006688 289 AGFSSD-----------------------SLAQRIMDCKPKVVITSNA 313 (635)
Q Consensus 289 ~~~~~~-----------------------~l~~il~~~~~~~ii~~~~ 313 (635)
+.+. ++...+++.++.+++....
T Consensus 169 --~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps 214 (369)
T 3hgu_A 169 --IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPP 214 (369)
T ss_dssp --CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHH
T ss_pred --CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHH
Confidence 3344 6666888999998887654
No 60
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=58.70 E-value=1.6 Score=45.30 Aligned_cols=48 Identities=6% Similarity=-0.236 Sum_probs=37.3
Q ss_pred CCcccchhh-hhhc-ccCCcCCCcccCCChhhhhccCCCChHHHHHHHhhhccChhhH
Q 006688 104 AGKISRLNA-VILG-EALSSEENDIVLPSDDFSRQALVPSPQKYLEMYKRSVEDPAGF 159 (635)
Q Consensus 104 ~~~~~L~~~-v~~~-~~~~~~~~~~~y~~~~f~~~~~~~~~~~~~~ll~~~~~~p~~~ 159 (635)
..+|+|.+. +... +++.+. + |+++ +++++++++|.++|++++++|+..
T Consensus 371 ~~~~~l~~~~~~~~~~~l~~~---~-y~~~----~~~~~l~~~~~~~L~~l~~~~~~~ 420 (422)
T 1q9j_A 371 SISVPLDLYSCAVYAGQLIIE---H-HGHI----AEPGKSLEAIRSLLCTVPSEYGWI 420 (422)
T ss_dssp BSSCCCCEEEEEEETTEEEEE---E-ESSC----SSHHHHHHHHHHHHHHTTTSCC--
T ss_pred CCCCCceEEEEEeeCCeEEEE---E-ecCc----cchHHHHHHHHHHHHHhhcCcccc
Confidence 467888877 4443 337777 8 9998 788899999999999999999754
No 61
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=55.66 E-value=52 Score=34.69 Aligned_cols=94 Identities=10% Similarity=0.012 Sum_probs=67.5
Q ss_pred CCCcEEEEEccCCCCCCcEEEEccchHHHHH---HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEec
Q 006688 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 462 (635)
Q Consensus 386 ~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~ 462 (635)
|+.++.++...+ +-.+|.+.+.... ...+. ..++.++|++...++-+..+ +..+++++..|+..+..+
T Consensus 14 p~~~a~~~~~~~------~~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~Ga~~vpl~ 84 (503)
T 4fuq_A 14 DDPHKLAIETAA------GDKISYAELVARAGRVANVLV-ARGLQVGDRVAAQTEKSVEA--LVLYLATVRAGGVYLPLN 84 (503)
T ss_dssp SCTTSEEEEETT------CCEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSCHHH--HHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEecCC------CcEEEHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHH--HHHHHHHHHcCcEEEecC
Confidence 455555554322 2357888754332 22333 46899999999999887654 567889999999999887
Q ss_pred CCCCCCChhHHHHHHHHcCCcEEEecHHH
Q 006688 463 GAPTYPDSGRSWDIVDKYKVTIFYTAPTL 491 (635)
Q Consensus 463 ~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~ 491 (635)
.. ...+++..++++.++.++...+..
T Consensus 85 ~~---~~~~~l~~il~~~~~~~vi~~~~~ 110 (503)
T 4fuq_A 85 TA---YTLHELDYFITDAEPKIVVCDPSK 110 (503)
T ss_dssp TT---CCHHHHHHHHHHHCCSEEEECGGG
T ss_pred CC---CCHHHHHHHHHhcCCcEEEECchh
Confidence 53 378999999999999999887653
No 62
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=55.63 E-value=62 Score=34.75 Aligned_cols=104 Identities=15% Similarity=0.055 Sum_probs=73.0
Q ss_pred CCCCcEEEEEccCCCCCCcEEEEccchHHHHH---HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEe
Q 006688 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (635)
Q Consensus 385 ~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~ 461 (635)
.|+.+|++.... -.+-.+|.+.+.... ...+. ..++.++|++...++-+..+ +..+|+++..|+..+..
T Consensus 24 ~p~~~a~~~~~~-----~~~~~~Ty~eL~~~~~~lA~~L~-~~gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl 95 (590)
T 3kxw_A 24 SPNKKSCTFLNK-----ELEETMTYEQLDQHAKAIAATLQ-AEGAKPGDRVLLLFAPGLPL--IQAFLGCLYAGCIAVPI 95 (590)
T ss_dssp CTTSEEEEEEET-----TEEEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEEE
T ss_pred CCCCeEEEEEcC-----CeeEEEcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCchhH--HHHHHHHHHhCcEEEEe
Confidence 577888765541 134678888764432 22333 46899999999998877654 56788999999999988
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHHH
Q 006688 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSLM 496 (635)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l~ 496 (635)
+........+++..+++..++.++...+.....+.
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 96 YPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp CCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred cCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 65211003467888899999999999888776653
No 63
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=51.77 E-value=45 Score=35.64 Aligned_cols=85 Identities=8% Similarity=-0.007 Sum_probs=64.3
Q ss_pred EEEccchHHHHH---HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcC
Q 006688 405 VLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYK 481 (635)
Q Consensus 405 V~~th~~l~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~ 481 (635)
..+|.+.+.... ...+. ..++.++|++...++-+... +..+++++..|+..+..+.. ..++++..++++.+
T Consensus 51 ~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~e~--~~~~la~~~~Gav~vpl~~~---~~~~~l~~~l~~~~ 124 (548)
T 2d1s_A 51 VDYSYAEYLEKSCCLGKALQ-NYGLVVDGRIALCSENCEEF--FIPVIAGLFIGVGVAPTNEI---YTLRELVHSLGISK 124 (548)
T ss_dssp CEEEHHHHHHHHHHHHHHHH-HHTCCTTCEEEEECSSCTTT--HHHHHHHHHHTCEEEEECTT---SCHHHHHHHHHHHC
T ss_pred CEeeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCchhH--HHHHHHHHhhCCEEeccCCC---CCHHHHHHHHHhcC
Confidence 357887754332 22333 36899999999998877654 56788999999999988754 37899999999999
Q ss_pred CcEEEecHHHHHHH
Q 006688 482 VTIFYTAPTLVRSL 495 (635)
Q Consensus 482 vt~l~~~Ps~l~~l 495 (635)
+.+++..+.....+
T Consensus 125 ~~~vi~~~~~~~~~ 138 (548)
T 2d1s_A 125 PTIVFSSKKGLDKV 138 (548)
T ss_dssp CSEEEECTTTHHHH
T ss_pred CeEEEEcHHHHHHH
Confidence 99999887665544
No 64
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=51.54 E-value=45 Score=35.38 Aligned_cols=96 Identities=11% Similarity=0.075 Sum_probs=69.4
Q ss_pred CCCCcEEEEEccCCCCCCcEEEEccchHHHHH---HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEe
Q 006688 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (635)
Q Consensus 385 ~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~ 461 (635)
.|+.+|++.. | ..+|.+.+.... ...+. ..++.++|++...++-+... +..+++++..|+..+..
T Consensus 36 ~p~~~A~~~~--~-------~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~vpl 103 (529)
T 2v7b_A 36 RAGKTAYIDD--T-------GSTTYGELEERARRFASALR-TLGVHPEERILLVMLDTVAL--PVAFLGALYAGVVPVVA 103 (529)
T ss_dssp GTTSEEEECS--S-------CEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSTHH--HHHHHHHHHHTCEEEEC
T ss_pred cCCceEEEeC--C-------CCccHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcHHH--HHHHHHHHHcCceEEec
Confidence 4677776521 1 357887754332 22333 46899999999998877654 56788999999999988
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEecHHHHHHH
Q 006688 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVRSL 495 (635)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~~l 495 (635)
+.. ..++++..++++.++.+++..+.....+
T Consensus 104 ~~~---~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 134 (529)
T 2v7b_A 104 NTL---LTPADYVYMLTHSHARAVIASGALVQNV 134 (529)
T ss_dssp CTT---CCHHHHHHHHHHHTCSEEEEEGGGHHHH
T ss_pred Ccc---cCHHHHHHHHhccCCeEEEechhhhhHH
Confidence 653 3789999999999999998877655443
No 65
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=50.96 E-value=64 Score=34.61 Aligned_cols=92 Identities=11% Similarity=0.075 Sum_probs=67.7
Q ss_pred CCCCcEEEEEccCCCCCCcEEEEccchHHHHH---HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEe
Q 006688 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (635)
Q Consensus 385 ~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~ 461 (635)
.|+.+|++. . +-.+|.+.+.... ...+. ..++.++|++...++-+..+ +..+|+++..|+..+..
T Consensus 88 ~pd~~A~~~-~--------~~~~Ty~el~~~~~~lA~~L~-~~Gv~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~vpl 155 (570)
T 4gr5_A 88 APDAVALLH-E--------ADELTYGALNERANRLAHRLV-GLGVAPGTLVGVHLERGFDM--VVALLAVLKAGGGYTML 155 (570)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEC-C--------CCcEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCHHH--HHHHHHHHHHCCEEEEc
Confidence 477777753 1 2358888754332 22333 46899999999999887654 56788999999999988
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEecHHH
Q 006688 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTL 491 (635)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~ 491 (635)
+.. ..++++..++++.++.++......
T Consensus 156 ~~~---~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 156 DPQ---FPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp CTT---SCHHHHHHHHHHHTCSEEEECTTT
T ss_pred CCC---ChHHHHHHHHHhcCCCEEEecchh
Confidence 753 378999999999999998876543
No 66
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=47.28 E-value=57 Score=34.49 Aligned_cols=96 Identities=11% Similarity=-0.017 Sum_probs=69.4
Q ss_pred CCCCcEEEEEccCCCCCCcEEEEccchHHHHH---HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEe
Q 006688 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (635)
Q Consensus 385 ~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~ 461 (635)
.|+.+|++.. | +...+|.+.+.... ...+. ..++.++|++...++-+..+ +..+|+++..|+..+..
T Consensus 29 ~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl 98 (517)
T 3r44_A 29 SPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLT-ALGIAKGDRVALLMPNSVEF--CCLFYGAAKLGAVAVPI 98 (517)
T ss_dssp STTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHHH--HHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHH-HcCCCCcCEEEEEcCCCHHH--HHHHHHHHHhCcEEEec
Confidence 4677776542 1 22468888754332 22333 46899999999999877654 56788999999999988
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEecHHHHH
Q 006688 462 EGAPTYPDSGRSWDIVDKYKVTIFYTAPTLVR 493 (635)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l~ 493 (635)
+.. ...+++..++++.++.++...+....
T Consensus 99 ~~~---~~~~~l~~~l~~~~~~~vi~~~~~~~ 127 (517)
T 3r44_A 99 NTR---LAAPEVSFILSDSGSKVVIYGAPSAP 127 (517)
T ss_dssp CTT---SCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred Ccc---cCHHHHHHHHHhcCceEEEECCchHH
Confidence 753 37899999999999999887665443
No 67
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=45.83 E-value=1.2e+02 Score=31.57 Aligned_cols=97 Identities=12% Similarity=0.110 Sum_probs=69.5
Q ss_pred cCCCceEEEE-EcCCCC--ccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchH-HHHHHHHHHhCCeEEecC
Q 006688 213 GLGDKVAIYW-EANDPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL-PIAMLACARIGAVHSVVF 288 (635)
Q Consensus 213 ~~pd~~Al~~-~~~~~~--~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~-iva~LA~l~~Ga~~vpld 288 (635)
..|+.+|++. ..+.++ ....+|.+.+...+..+. ...++.++|++...+|-.-.+ +..+++.+..|+..+..+
T Consensus 160 ~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~ 236 (501)
T 3ipl_A 160 FNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCK---ESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD 236 (501)
T ss_dssp CCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHH---HHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS
T ss_pred CCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHH---HhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC
Confidence 4577887764 222212 245689998877666544 345889999998888765432 334678889999888776
Q ss_pred CCCCHHHHHHHHHhcCCeEEEEeCC
Q 006688 289 AGFSSDSLAQRIMDCKPKVVITSNA 313 (635)
Q Consensus 289 ~~~~~~~l~~il~~~~~~~ii~~~~ 313 (635)
...++++...+++.++.++.....
T Consensus 237 -~~~~~~~~~~i~~~~~t~~~~~P~ 260 (501)
T 3ipl_A 237 -KFNAEQILTMIKNERITHISLVPQ 260 (501)
T ss_dssp -SCCHHHHHHHHHHSCCCEEEECHH
T ss_pred -CCCHHHHHHHHHHcCCcEEEchHH
Confidence 478899999999999999887654
No 68
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=43.87 E-value=1.7e+02 Score=29.19 Aligned_cols=72 Identities=22% Similarity=0.227 Sum_probs=45.0
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHhCCeE--EecCCC--CCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHH
Q 006688 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVH--SVVFAG--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326 (635)
Q Consensus 254 v~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~--vpld~~--~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~ 326 (635)
+++||.|.+..+...... ..-++...|+.+ +|++++ ...+.++..++..++++|+........+...+++++
T Consensus 83 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i 158 (416)
T 3isl_A 83 IEPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAI 158 (416)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHHH
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHHH
Confidence 689999888765433211 222455668744 455443 367889998886678888877655555555555544
No 69
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=43.27 E-value=1.3e+02 Score=31.90 Aligned_cols=96 Identities=14% Similarity=0.074 Sum_probs=68.6
Q ss_pred CCCceEEEE-EcCCCC--ccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchHHH---HHHHHHHhCCeEEec
Q 006688 214 LGDKVAIYW-EANDPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMELPI---AMLACARIGAVHSVV 287 (635)
Q Consensus 214 ~pd~~Al~~-~~~~~~--~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~iv---a~LA~l~~Ga~~vpl 287 (635)
.|+.+|++. ..+.++ .+..+|.+.+...+..++. ..++.++|++...+|-+..+-. .+++.+..|+..+..
T Consensus 189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAE---ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CccceEEEEECCCcccCCceEEechHHHHHHHHHHHH---HhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 467777764 222212 2457899998777665544 4588999999998886654433 478889999988876
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEEeCC
Q 006688 288 FAGFSSDSLAQRIMDCKPKVVITSNA 313 (635)
Q Consensus 288 d~~~~~~~l~~il~~~~~~~ii~~~~ 313 (635)
+ ...+.++...+++.++.++.....
T Consensus 266 ~-~~~~~~~~~~i~~~~~t~~~~~P~ 290 (544)
T 3o83_A 266 P-NPEPLNCFSIIQRHQVNMASLVPS 290 (544)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEECHH
T ss_pred C-CCCHHHHHHHHHHHCCCEEEechH
Confidence 5 467888889999999999887654
No 70
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=40.63 E-value=1.6e+02 Score=31.14 Aligned_cols=96 Identities=14% Similarity=0.046 Sum_probs=68.4
Q ss_pred CCCceEEEE-EcCCCC--ccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchH--HH-HHHHHHHhCCeEEec
Q 006688 214 LGDKVAIYW-EANDPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL--PI-AMLACARIGAVHSVV 287 (635)
Q Consensus 214 ~pd~~Al~~-~~~~~~--~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~--iv-a~LA~l~~Ga~~vpl 287 (635)
.|+.+|++. ..+.++ .+..+|.+.+...+..... ..++.++|++...+|-+-.+ .. .+++.+..|+..+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 467777764 222212 2457999988766655443 45788999998888866443 22 578899999988876
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEEeCC
Q 006688 288 FAGFSSDSLAQRIMDCKPKVVITSNA 313 (635)
Q Consensus 288 d~~~~~~~l~~il~~~~~~~ii~~~~ 313 (635)
+ ...++++...+++.++.++.....
T Consensus 257 ~-~~~~~~~~~~i~~~~~t~~~~~P~ 281 (539)
T 1mdb_A 257 P-SPSPDDAFPLIEREKVTITALVPP 281 (539)
T ss_dssp S-SSSHHHHHHHHHHHTCSEEEECHH
T ss_pred C-CCCHHHHHHHHHHcCCeEEEccHH
Confidence 5 467889999999999999887654
No 71
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=38.32 E-value=1e+02 Score=30.47 Aligned_cols=66 Identities=12% Similarity=-0.047 Sum_probs=45.2
Q ss_pred HHHHcC-CCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCC
Q 006688 248 YLKDIG-VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNA 313 (635)
Q Consensus 248 ~L~~~G-v~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~ 313 (635)
.+.+.| +++|+.|.|....+-.-....+++.+.|.-++.+=|...+.....+++..++++++++..
T Consensus 61 ~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 61 KAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 344556 488888655666677777778888888985444333333445567788999999998754
No 72
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=36.44 E-value=96 Score=35.83 Aligned_cols=96 Identities=15% Similarity=0.042 Sum_probs=70.0
Q ss_pred CCCCCcEEEEEccCCCCCCcEEEEccchHHHHH---HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEE
Q 006688 384 VDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVV 460 (635)
Q Consensus 384 ~~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl 460 (635)
..|+.+|++.- .+| ..+|.+.+.... ...+. ..++.++|++...++-+... +..+|+++..|+..+.
T Consensus 73 ~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~ns~e~--~v~~lA~~~~Ga~~vp 142 (979)
T 3tsy_A 73 EFATKPCLING---PTG----HVYTYSDVHVISRQIAANFH-KLGVNQNDVVMLLLPNCPEF--VLSFLAASFRGATATA 142 (979)
T ss_dssp GTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECSSCHHH--HHHHHHHHHHTCEEEE
T ss_pred hCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHH-HcCCCCcCEEEEEeCCCHHH--HHHHHHHHHcCCEEEe
Confidence 35788887642 222 457887754322 22333 46899999999999887654 5678999999999999
Q ss_pred ecCCCCCCChhHHHHHHHHcCCcEEEecHHHH
Q 006688 461 FEGAPTYPDSGRSWDIVDKYKVTIFYTAPTLV 492 (635)
Q Consensus 461 ~~~~~~~~d~~~l~~~i~~~~vt~l~~~Ps~l 492 (635)
.+.. ..++++..++++.++.+++..+...
T Consensus 143 l~~~---~~~~~l~~~l~~~~~~~vi~~~~~~ 171 (979)
T 3tsy_A 143 ANPF---FTPAEIAKQAKASNTKLIITEARYV 171 (979)
T ss_dssp ECTT---SCHHHHHHHHHHHTEEEEEECSTTT
T ss_pred eCCC---CCHHHHHHHHHHcCCeEEEEChHHH
Confidence 8753 4889999999999999998876544
No 73
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=33.88 E-value=1.9e+02 Score=29.70 Aligned_cols=71 Identities=11% Similarity=0.089 Sum_probs=45.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHH-HHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHH
Q 006688 254 VKKGDAVIIYLPMLMELPIAML-ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326 (635)
Q Consensus 254 v~~gd~Vai~~~ns~e~iva~L-A~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~ 326 (635)
+++||.|.+.-+.-....-.+- .+.+.|+.++.++.+ ..+.++..++. ++++|+.+......+...++..+
T Consensus 118 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-d~~~l~~ai~~-~t~~v~~e~p~NptG~~~dl~~i 189 (430)
T 3ri6_A 118 ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-DSLAVEHACDE-TTKLLFLETISNPQLQVADLEAL 189 (430)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHH
T ss_pred hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhhCC-CCeEEEEECCCCCCCeecCHHHH
Confidence 6899998665444333333222 566789887777765 66777776654 67888887766555665655543
No 74
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=33.07 E-value=1.1e+02 Score=32.00 Aligned_cols=97 Identities=13% Similarity=0.186 Sum_probs=67.6
Q ss_pred CCCceEEEE-EcCCCC--ccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchH-HHHHHHHHHhCCeEEecCC
Q 006688 214 LGDKVAIYW-EANDPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL-PIAMLACARIGAVHSVVFA 289 (635)
Q Consensus 214 ~pd~~Al~~-~~~~~~--~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~-iva~LA~l~~Ga~~vpld~ 289 (635)
.|+.+|++. ..+.++ ....+|.+.+...+.... ...++.++|++..+++-+..+ +..+++.+..|+..+.+++
T Consensus 142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAV---EDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHH---HHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence 466777653 322212 245789988876655443 345889999999988866433 4457888999998888765
Q ss_pred C--CCHHHHHHHHHhcCCeEEEEeCC
Q 006688 290 G--FSSDSLAQRIMDCKPKVVITSNA 313 (635)
Q Consensus 290 ~--~~~~~l~~il~~~~~~~ii~~~~ 313 (635)
. ..++++...+++.++.++.....
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~ 244 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPS 244 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHH
Confidence 3 46788889999999998887543
No 75
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=32.89 E-value=1.5e+02 Score=27.24 Aligned_cols=82 Identities=17% Similarity=0.025 Sum_probs=47.7
Q ss_pred cceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCCcEEEe------cHHH--HHHHHhcCccccccCCC-
Q 006688 438 CGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKVTIFYT------APTL--VRSLMRDGNEYVTRYSR- 508 (635)
Q Consensus 438 l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~vt~l~~------~Ps~--l~~l~~~~~~~~~~~~l- 508 (635)
=.|+.|....-..--..|-.++..... ..++.+.+.+.++++.++.+ ++++ +..+++.. +...+
T Consensus 103 d~HdiG~~iv~~~l~~~G~~Vi~LG~~---vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l----~~~~~~ 175 (215)
T 3ezx_A 103 DIHDIGHRLVTTMLGANGFQIVDLGVD---VLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRL----NEEKLR 175 (215)
T ss_dssp CCCCHHHHHHHHHHHHTSCEEEECCSS---CCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHH----HHTTCG
T ss_pred ChhHHHHHHHHHHHHHCCCeEEEcCCC---CCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHH----HHcCCC
Confidence 347777433222223467777665432 38899999999999997776 3322 23333221 11122
Q ss_pred CCceEEEecCCCCCHHHHH
Q 006688 509 KSLRVLGSVGEPINPSAWR 527 (635)
Q Consensus 509 ~sLr~v~~gGe~l~~~l~~ 527 (635)
..++ +++||.+++++..+
T Consensus 176 ~~v~-v~vGG~~~~~~~a~ 193 (215)
T 3ezx_A 176 DSVK-CMFGGAPVSDKWIE 193 (215)
T ss_dssp GGSE-EEEESSSCCHHHHH
T ss_pred CCCE-EEEECCCCCHHHHH
Confidence 1344 67899999977544
No 76
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=31.46 E-value=2.5e+02 Score=29.61 Aligned_cols=97 Identities=14% Similarity=0.052 Sum_probs=65.7
Q ss_pred CCCCcEEEEEccCCCCCC--cEEEEccchHHHHH---HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEE
Q 006688 385 DAEDPLFLLYTSGSTGKP--KGVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVV 459 (635)
Q Consensus 385 ~~~d~a~Ii~TSGTTG~P--KgV~~th~~l~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lv 459 (635)
.|+.+|++... +..+.. ..-.+|.+.+.... ...+. ..++ ++|++...++-+..+ +..+|+++..|+..+
T Consensus 33 ~p~~~A~~~~~-~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~-~~g~-~gd~V~i~~~n~~~~--~~~~lA~~~~Gav~v 107 (562)
T 3ite_A 33 HPEWKAVEVAT-GFLGSQKIVTEDWTYKKLNETANQVANLII-HASL-HGRAIAVSLDRSLIA--FAIIVGIMKSGNTYV 107 (562)
T ss_dssp CTTSEEEEEEE-CC-----CEEEEEEHHHHHHHHHHHHHHHH-HTTC-SSCEEEEECCSCHHH--HHHHHHHHHTTCEEE
T ss_pred CCCchhhhccc-ccccccccccCCCCHHHHHHHHHHHHHHHH-hcCC-CCCEEEEEeCCCHHH--HHHHHHHHHhCCEEE
Confidence 57788876543 222332 23568888754332 22222 3566 699999998887654 567889999999999
Q ss_pred EecCCCCCCChhHHHHHHHHcCCcEEEecH
Q 006688 460 VFEGAPTYPDSGRSWDIVDKYKVTIFYTAP 489 (635)
Q Consensus 460 l~~~~~~~~d~~~l~~~i~~~~vt~l~~~P 489 (635)
..+.. ..++++..++++.++.+++...
T Consensus 108 pl~~~---~~~~~l~~~l~~~~~~~~i~~~ 134 (562)
T 3ite_A 108 PIEAG---LPNDRKSFLLRDSRAAMAFVCD 134 (562)
T ss_dssp ECCTT---SCHHHHHHHHHHHTCSEEEECT
T ss_pred ecCCc---CHHHHHHHHHHhcCCCEEEEcc
Confidence 88653 3789999999999999877653
No 77
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=31.05 E-value=1.3e+02 Score=31.49 Aligned_cols=97 Identities=12% Similarity=0.192 Sum_probs=67.9
Q ss_pred CCCceEEE-EEcCCCC--ccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchH-HHHHHHHHHhCCeEEecCC
Q 006688 214 LGDKVAIY-WEANDPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL-PIAMLACARIGAVHSVVFA 289 (635)
Q Consensus 214 ~pd~~Al~-~~~~~~~--~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~-iva~LA~l~~Ga~~vpld~ 289 (635)
.++.+|++ +..+.++ ....+|.+.+...+..++ ...++.++|++...++-+..+ +..++.++..|+..+.++.
T Consensus 141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWIC---ADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHH---HHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHH---HhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence 45667765 3332222 245789988876665544 345788999999988876443 3457888999998887654
Q ss_pred C--CCHHHHHHHHHhcCCeEEEEeCC
Q 006688 290 G--FSSDSLAQRIMDCKPKVVITSNA 313 (635)
Q Consensus 290 ~--~~~~~l~~il~~~~~~~ii~~~~ 313 (635)
. ..++++...+++.++.+++....
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~ 243 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPS 243 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHH
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHH
Confidence 3 46778888999999998887543
No 78
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=30.98 E-value=3.5e+02 Score=26.20 Aligned_cols=69 Identities=16% Similarity=0.112 Sum_probs=44.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecC--C----CCCHHHHHHHHHh----cCCeEEEEeCCcccCCcccch
Q 006688 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF--A----GFSSDSLAQRIMD----CKPKVVITSNAVKRGPKAIHL 323 (635)
Q Consensus 254 v~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld--~----~~~~~~l~~il~~----~~~~~ii~~~~~~~~~~~~~~ 323 (635)
+++||.|.+..+.-.....+ +...|+.++.++ . ....+.++..+++ -++++|+........+...++
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~ 166 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDV 166 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCH
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCH
Confidence 46899887776554444333 667788665555 2 2367888888875 367788877665555555554
Q ss_pred HH
Q 006688 324 KD 325 (635)
Q Consensus 324 ~~ 325 (635)
++
T Consensus 167 ~~ 168 (371)
T 2e7j_A 167 KK 168 (371)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 79
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=30.77 E-value=1.7e+02 Score=31.07 Aligned_cols=89 Identities=9% Similarity=-0.026 Sum_probs=63.2
Q ss_pred EEEEccchHHHHH---HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCC----hhHHHHH
Q 006688 404 GVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPD----SGRSWDI 476 (635)
Q Consensus 404 gV~~th~~l~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d----~~~l~~~ 476 (635)
.-.+|.+.+.... ...+. ..++.++|++...++-+... +..+++++..|+..+..+......+ .+++..+
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~-~~Gv~~gd~V~i~~~~~~~~--~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~ 123 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLL-SLNLKKGDRVALIAETSSEF--VEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGL 123 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHH-HTCCCTTCEEEEECCSSHHH--HHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCcHHH--HHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHH
Confidence 3568888754333 22333 46899999999999887654 5678899999999998864311001 5788889
Q ss_pred HHHcCCcEEEecHHHHHHH
Q 006688 477 VDKYKVTIFYTAPTLVRSL 495 (635)
Q Consensus 477 i~~~~vt~l~~~Ps~l~~l 495 (635)
++..++..+.........+
T Consensus 124 l~~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 124 LASCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHHHCCSEEEECGGGHHHH
T ss_pred HHhcCCCEEEecHHHHHHH
Confidence 9999999998877655544
No 80
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=30.65 E-value=1e+02 Score=32.42 Aligned_cols=79 Identities=9% Similarity=0.014 Sum_probs=58.6
Q ss_pred EEEccchHHHHH---HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcC
Q 006688 405 VLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYK 481 (635)
Q Consensus 405 V~~th~~l~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~ 481 (635)
-.+|.+.+.... ...+. ..++.++|++...++-+... +..+|+++..|+..+..+.. ..++++..+++..+
T Consensus 28 ~~~Ty~el~~~~~~lA~~L~-~~g~~~gd~V~i~~~n~~~~--~~~~lA~~~~G~v~vpl~~~---~~~~~l~~il~~~~ 101 (521)
T 3l8c_A 28 ERRTYGQLKRDSDSIAAFID-SLALLAKSPVLVFGAQTYDM--LATFVALTKSGHAYIPVDVH---SAPERILAIIEIAK 101 (521)
T ss_dssp EEEEHHHHHHHHHHHHHHHH-HTCCCTTCCEEEEECSSHHH--HHHHHHHHHTTCCEEEEETT---SCHHHHHHHHHHSC
T ss_pred CeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCHHH--HHHHHHHHHhCCEEEecCcc---ccHHHHHHHHHhCC
Confidence 347887754332 22232 46889999998888777544 56788999999999988753 37899999999999
Q ss_pred CcEEEecH
Q 006688 482 VTIFYTAP 489 (635)
Q Consensus 482 vt~l~~~P 489 (635)
+.+++...
T Consensus 102 ~~~ii~~~ 109 (521)
T 3l8c_A 102 PSLIIAIE 109 (521)
T ss_dssp CSEEEESS
T ss_pred CCEEEecC
Confidence 99887643
No 81
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=27.97 E-value=2.8e+02 Score=27.61 Aligned_cols=70 Identities=14% Similarity=0.084 Sum_probs=48.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHHH
Q 006688 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDIV 327 (635)
Q Consensus 254 v~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~~ 327 (635)
.++||.|.+--+.-. ...-++...|+..++++. ...+.++..+++.++++|+++......+...+++++.
T Consensus 140 ~~~gd~Vl~~~~~~~---~~~~~~~~~g~~~~~~~~-~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~l~ 209 (409)
T 3kki_A 140 CQPNTNVYIDFFAHM---SLWEGARYANAQAHPFMH-NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAELV 209 (409)
T ss_dssp CCTTCEEEEETTSCH---HHHHHHHHTTCEEEEECT-TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHHHH
T ss_pred cCCCCEEEECCCcCH---HHHHHHHHcCCeEEEecC-CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHHHH
Confidence 578998877544433 334456677988888754 5688899999887788999887665555555544433
No 82
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=27.18 E-value=4.6e+02 Score=25.78 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=43.3
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHhCCe--EEecCCC--CCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHH
Q 006688 254 VKKGDAVIIYLPMLMELPIAMLACARIGAV--HSVVFAG--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326 (635)
Q Consensus 254 v~~gd~Vai~~~ns~e~iva~LA~l~~Ga~--~vpld~~--~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~ 326 (635)
+++||.|.+..+.-... ...-++...|+. .+|++.. ...+.++..++..++++|+........+...+++++
T Consensus 85 ~~~gd~Vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i 160 (411)
T 3nnk_A 85 IRPGDKVLVPVFGRFGH-LLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPLAEL 160 (411)
T ss_dssp CCTTCEEEEEECSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTH
T ss_pred cCCCCEEEEecCCchHH-HHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccHHHH
Confidence 67899987766532211 123344566764 4455433 267889888887688888887644444444444433
No 83
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=27.10 E-value=1.7e+02 Score=31.61 Aligned_cols=89 Identities=7% Similarity=-0.028 Sum_probs=64.8
Q ss_pred CCCcEEEEEccCCCCCCcEEEEccchHHHHH---HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEec
Q 006688 386 AEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVFE 462 (635)
Q Consensus 386 ~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~~ 462 (635)
|+.+|.+- | +-.+|.+.+.... ...+. ..++.++|++...++-+... +..+++.+..|+..+..+
T Consensus 39 pd~~Av~~---~------~~~lTY~eL~~~a~~lA~~L~-~~Gv~~gd~V~l~~~~s~~~--vva~lA~l~aG~~~vpl~ 106 (617)
T 3rg2_A 39 SDSIAVID---G------ERQLSYRELNQAADNLACSLR-RQGIKPGETALVQLGNVAEL--YITFFALLKLGVAPVLAL 106 (617)
T ss_dssp CCSEEEEE---T------TEEEEHHHHHHHHHHHHHHHH-HTTCCTTCEEEEECCSSHHH--HHHHHHHHHHTCEEEEEC
T ss_pred CCCeEEec---C------CceEeHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCcHHH--HHHHHHHHhcCeEEccCC
Confidence 67777652 1 2458888754332 22333 46899999999998877654 567899999999988876
Q ss_pred CCCCCCChhHHHHHHHHcCCcEEEecH
Q 006688 463 GAPTYPDSGRSWDIVDKYKVTIFYTAP 489 (635)
Q Consensus 463 ~~~~~~d~~~l~~~i~~~~vt~l~~~P 489 (635)
.. ...+++..++++.++.++....
T Consensus 107 ~~---~~~~~l~~~l~~~~~~~vl~~~ 130 (617)
T 3rg2_A 107 FS---HQRSELNAYASQIEPALLIADR 130 (617)
T ss_dssp TT---CCHHHHHHHHHHHCCSEEEEET
T ss_pred cc---ccHHHHHHHHhhcCceEEEecc
Confidence 53 3778899999999999888754
No 84
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=26.63 E-value=3.1e+02 Score=26.69 Aligned_cols=72 Identities=13% Similarity=-0.001 Sum_probs=43.2
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecC--CC--CCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHH
Q 006688 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVF--AG--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326 (635)
Q Consensus 254 v~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld--~~--~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~ 326 (635)
.++||.|.+..+.-.-+.-.+.++...|+.++.++ ++ ...+.++..++. ++++|+........+...+++++
T Consensus 86 ~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i 161 (384)
T 1eg5_A 86 EKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIMAANNEVGTIQPVEDV 161 (384)
T ss_dssp TTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEESBCTTTCBBCCHHHH
T ss_pred cCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEECCCCCcccccCHHHH
Confidence 46889887765544444444444456788665554 33 356777777654 67888877655445555554433
No 85
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=26.14 E-value=4.8e+02 Score=25.64 Aligned_cols=69 Identities=7% Similarity=0.006 Sum_probs=46.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhc---CCeEEEEeCCcccCCcccchHHH
Q 006688 254 VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDC---KPKVVITSNAVKRGPKAIHLKDI 326 (635)
Q Consensus 254 v~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~---~~~~ii~~~~~~~~~~~~~~~~~ 326 (635)
.++||.|.+..+.-..+. -++...|+..++++. ...+.++..++.. ++++|++.......+...+++++
T Consensus 124 ~~~gd~V~~~~p~~~~~~---~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~~l 195 (398)
T 3a2b_A 124 MGRNDYILLDERDHASII---DGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLPEL 195 (398)
T ss_dssp SCTTCEEEEETTCCHHHH---HHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHHHH
T ss_pred hCCCCEEEECCccCHHHH---HHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHHHH
Confidence 578999887766544443 345667887777764 5678899988875 68888887765544544554443
No 86
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=25.44 E-value=2.3e+02 Score=28.02 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=46.0
Q ss_pred HHcC-CCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCC
Q 006688 250 KDIG-VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNA 313 (635)
Q Consensus 250 ~~~G-v~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~ 313 (635)
.+.| +++|.+..|....+-.-+..-+++.+.|.-++.+=|...+......++..++++++++..
T Consensus 78 ~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 78 EEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 3444 678876667777788888888999999984444434444445567789999999998654
No 87
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=25.35 E-value=1.5e+02 Score=29.68 Aligned_cols=61 Identities=16% Similarity=0.071 Sum_probs=39.9
Q ss_pred HHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEe--cCC---CCCHHHHHHHHHhcC--CeEEEEe
Q 006688 248 YLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSV--VFA---GFSSDSLAQRIMDCK--PKVVITS 311 (635)
Q Consensus 248 ~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vp--ld~---~~~~~~l~~il~~~~--~~~ii~~ 311 (635)
.|+.+++++||.|.+-.+.-..+ .-++...|+.++. +++ ....+.++..+...+ .++|+..
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 45556789999988776654443 3456678986554 443 247788888774444 7777743
No 88
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=24.72 E-value=3.8e+02 Score=27.04 Aligned_cols=76 Identities=9% Similarity=0.091 Sum_probs=46.7
Q ss_pred HHHHcCCCCCCEEEEEcCCCchHHHHHH-HHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHH
Q 006688 248 YLKDIGVKKGDAVIIYLPMLMELPIAML-ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326 (635)
Q Consensus 248 ~L~~~Gv~~gd~Vai~~~ns~e~iva~L-A~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~ 326 (635)
.|+.. +++||.|.+..+.-......+- .+-+.|+.++.++.. ..+.++..++. +.++|+.+......+...+++.+
T Consensus 112 al~~l-~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~ai~~-~t~~v~le~p~NptG~~~~l~~i 188 (414)
T 3ndn_A 112 SLGAL-LGAGDRLVAARSLFGSCFVVCSEILPRWGVQTVFVDGD-DLSQWERALSV-PTQAVFFETPSNPMQSLVDIAAV 188 (414)
T ss_dssp HHHTT-CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHTSS-CCSEEEEESSCTTTCCCCCHHHH
T ss_pred HHHHH-hCCCCEEEEcCCccchHHHHHHHHHHHcCcEEEEeCCC-CHHHHHHhcCC-CCeEEEEECCCCCCCccccHHHH
Confidence 34444 6899998776554444333221 134578877776654 56777777654 67888887766555655555543
No 89
>3l48_A Outer membrane usher protein PAPC; IG fold, greek KEY, cell outer membrane, fimbrium, transmembrane, transport, transport protein; 2.10A {Escherichia coli} PDB: 2kt6_A
Probab=23.42 E-value=49 Score=26.20 Aligned_cols=29 Identities=21% Similarity=0.143 Sum_probs=18.6
Q ss_pred CCCCC-CCeEEEEcCCCCccC-CCcceEEEEec
Q 006688 569 TFPFF-GVQPVIVDEKGVEIE-GECSGYLCIKS 599 (635)
Q Consensus 569 G~pl~-g~~v~IvD~~g~~vp-~g~~GEL~i~g 599 (635)
|+|+| |..+ .|++++.+. .|.-|++|++|
T Consensus 19 G~plPfGA~V--~d~~g~~~giVG~~G~vyl~g 49 (94)
T 3l48_A 19 GSQPPFGASV--TSEKGRELGMVADEGLAWLSG 49 (94)
T ss_dssp SCCCCTTCEE--ECTTCCEEEEBCGGGEEEESS
T ss_pred CCcCCCccEE--EcCCCceEEEECCCCEEEEEC
Confidence 55555 5444 466665544 67778888887
No 90
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=22.79 E-value=5.4e+02 Score=25.07 Aligned_cols=72 Identities=18% Similarity=0.164 Sum_probs=41.5
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHhCCe--EEecCCC--CCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHH
Q 006688 254 VKKGDAVIIYLPMLMELPIAMLACARIGAV--HSVVFAG--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326 (635)
Q Consensus 254 v~~gd~Vai~~~ns~e~iva~LA~l~~Ga~--~vpld~~--~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~ 326 (635)
+++||.|.+..+...-. ...-.+-..|+. ++|++++ ...+.++..++..++++|+........+...+++++
T Consensus 91 ~~~gd~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~i 166 (393)
T 2huf_A 91 LEDGDVILIGHTGHWGD-RSADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGLEGV 166 (393)
T ss_dssp CCTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTTH
T ss_pred hCCCCEEEEECCCcchH-HHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCccccCCHHHH
Confidence 46899887776543332 111123446764 4555443 567888888876567888776544444444444433
No 91
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=22.56 E-value=2.5e+02 Score=27.37 Aligned_cols=70 Identities=13% Similarity=0.062 Sum_probs=43.3
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHhCCeEEe--cCCC--CCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHH
Q 006688 255 KKGDAVIIYLPMLMELPIAMLACARIGAVHSV--VFAG--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD 325 (635)
Q Consensus 255 ~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vp--ld~~--~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~ 325 (635)
++||.|.+..+..+-+.-++..+.+.|+.++. ++.+ ...+.++..++. ++++|+........+...++++
T Consensus 86 ~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~ 159 (382)
T 4hvk_A 86 RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQHANNEIGTIQPVEE 159 (382)
T ss_dssp GGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECCSBCTTTCBBCCHHH
T ss_pred CCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc-CceEEEEECCCCCceeeCCHHH
Confidence 57999888766666555554444566875554 4433 356777777653 5677777665544555555443
No 92
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=22.34 E-value=2.9e+02 Score=28.74 Aligned_cols=96 Identities=16% Similarity=0.165 Sum_probs=65.6
Q ss_pred cCCCceEEEE-EcCCCC--ccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchH--HHHHHHHHHhCCeEEec
Q 006688 213 GLGDKVAIYW-EANDPG--VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL--PIAMLACARIGAVHSVV 287 (635)
Q Consensus 213 ~~pd~~Al~~-~~~~~~--~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~--iva~LA~l~~Ga~~vpl 287 (635)
..|+.+|++. ..+.++ .+..+|.+.+...+..++..+ ++.++|++...++-.-.. +..+++.+..|+..+..
T Consensus 152 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~ 228 (505)
T 3nyq_A 152 ADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL 228 (505)
T ss_dssp CCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEEC
T ss_pred CCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEEC
Confidence 3466777663 332222 245789999887777665544 788999988877764332 34578899999988876
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEEeCC
Q 006688 288 FAGFSSDSLAQRIMDCKPKVVITSNA 313 (635)
Q Consensus 288 d~~~~~~~l~~il~~~~~~~ii~~~~ 313 (635)
+ ....+.+...+ +.++.+++....
T Consensus 229 ~-~~~~~~~~~~i-~~~~t~~~~~P~ 252 (505)
T 3nyq_A 229 G-RFSTEGAAREL-NDGATMLFGVPT 252 (505)
T ss_dssp S-SCCHHHHHHHH-TTTCCEEEECHH
T ss_pred C-CCChHHHHHHH-hhCCeEEEehHH
Confidence 5 46667777777 678888776544
No 93
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=22.34 E-value=4.7e+02 Score=25.35 Aligned_cols=71 Identities=14% Similarity=0.096 Sum_probs=42.1
Q ss_pred CCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCC---C--CCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHH
Q 006688 255 KKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA---G--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326 (635)
Q Consensus 255 ~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~---~--~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~ 326 (635)
++||.|.+.-+......+ .-++.+.|+.++.++. + ...+.++..++..++++|+........+...+++++
T Consensus 84 ~~gd~vlv~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~i 159 (385)
T 2bkw_A 84 APNKNVLVVSTGTFSDRF-ADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAI 159 (385)
T ss_dssp CSCCEEEEECSSHHHHHH-HHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHHHH
T ss_pred CCCCeEEEEcCCcchHHH-HHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCeEcCHHHH
Confidence 689988766443322221 2244567875554433 2 467888888876567888877655444555554433
No 94
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=22.33 E-value=1.8e+02 Score=30.46 Aligned_cols=79 Identities=11% Similarity=0.139 Sum_probs=44.8
Q ss_pred EEEEeCCcceecch-hHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCC--cEEEec---HHHHHHHHhcCccccc
Q 006688 431 VYWCTADCGWITGH-SYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKV--TIFYTA---PTLVRSLMRDGNEYVT 504 (635)
Q Consensus 431 ~~l~~~~l~~~~g~-~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~v--t~l~~~---Ps~l~~l~~~~~~~~~ 504 (635)
+++..+|..|-..+ .+.+..+|..|.++++-+.+........+.+++++.+. .++.++ +..-..|+++
T Consensus 144 VV~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~~~~~L~~~------ 217 (486)
T 1t90_A 144 VVGGIAPFNFPMMVPCWMFPMAIALGNTFILKPSERTPLLTEKLVELFEKAGLPKGVFNVVYGAHDVVNGILEH------ 217 (486)
T ss_dssp EEEEECCSSCTTHHHHHHHHHHHHTTCEEEEECCSSSCHHHHHHHHHHHHTTCCTTSEEECCCSHHHHHHHHHC------
T ss_pred EEEEECCCchhHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhC------
Confidence 56666666653221 34566788899999887654332345667777777532 233332 3445556554
Q ss_pred cCCCCCceEEEecCC
Q 006688 505 RYSRKSLRVLGSVGE 519 (635)
Q Consensus 505 ~~~l~sLr~v~~gGe 519 (635)
+.++.+.+.|.
T Consensus 218 ----~~v~~I~fTGS 228 (486)
T 1t90_A 218 ----PEIKAISFVGS 228 (486)
T ss_dssp ----TTEEEEEEESC
T ss_pred ----CCCCEEEEeCC
Confidence 23556665553
No 95
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=21.85 E-value=2.5e+02 Score=27.56 Aligned_cols=76 Identities=18% Similarity=0.183 Sum_probs=43.1
Q ss_pred HHcCCCCCCEEEEEcCCCchHHHHHHH-HHHhCCeEEecCCC------CCHHHHHHHHHhcCCeEEEEeCCcccCCcccc
Q 006688 250 KDIGVKKGDAVIIYLPMLMELPIAMLA-CARIGAVHSVVFAG------FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIH 322 (635)
Q Consensus 250 ~~~Gv~~gd~Vai~~~ns~e~iva~LA-~l~~Ga~~vpld~~------~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~ 322 (635)
+...+++||.|.+..+.-......+.. +...|+.++.++.. ...+.++..++. ++++|+........+...+
T Consensus 94 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~ 172 (390)
T 1elu_A 94 WGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGP-KTRLVILSHLLWNTGQVLP 172 (390)
T ss_dssp HHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCT-TEEEEEEESBCTTTCCBCC
T ss_pred hCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCC-CceEEEEeccccCCceecC
Confidence 333467899998877665555444433 34568765554432 334555555542 5677877765554555555
Q ss_pred hHHH
Q 006688 323 LKDI 326 (635)
Q Consensus 323 ~~~~ 326 (635)
++++
T Consensus 173 ~~~i 176 (390)
T 1elu_A 173 LAEI 176 (390)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 96
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=21.77 E-value=4.1e+02 Score=26.31 Aligned_cols=61 Identities=25% Similarity=0.315 Sum_probs=40.1
Q ss_pred HHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCC--C--CCHHHHHHHHHhc--CCeEEEEeC
Q 006688 249 LKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFA--G--FSSDSLAQRIMDC--KPKVVITSN 312 (635)
Q Consensus 249 L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~--~--~~~~~l~~il~~~--~~~~ii~~~ 312 (635)
++..++++||.|.+..+.-..... ++...|+.++.++. + ...+.++..++.. ++++|+...
T Consensus 64 ~~~l~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 64 LRVAGVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp HHHTTCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred HHHcCCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 444457899998887776655443 34457876555443 2 4678888888764 577777765
No 97
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=21.57 E-value=3.2e+02 Score=26.94 Aligned_cols=92 Identities=10% Similarity=0.030 Sum_probs=57.2
Q ss_pred CCceEEE-E-EcCCCC-ccEEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCchH-HHHHHHHHHhCCeEEecCCC
Q 006688 215 GDKVAIY-W-EANDPG-VDATLTYSQLLQQVCQLANYLKDIGVKKGDAVIIYLPMLMEL-PIAMLACARIGAVHSVVFAG 290 (635)
Q Consensus 215 pd~~Al~-~-~~~~~~-~~~~lTY~eL~~~~~~lA~~L~~~Gv~~gd~Vai~~~ns~e~-iva~LA~l~~Ga~~vpld~~ 290 (635)
.|.+|++ + .+..|. ....+|.+.|...+..++. ..++.++|++..++|-+-.+ +..++..+..|+..+..++.
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~ 112 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT 112 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc
Confidence 5666665 3 332222 2457999998776655443 45889999999888766432 34456667778876666654
Q ss_pred CCHHHHHHHHHhcCCeEEEEeC
Q 006688 291 FSSDSLAQRIMDCKPKVVITSN 312 (635)
Q Consensus 291 ~~~~~l~~il~~~~~~~ii~~~ 312 (635)
.. ....+++.++.++....
T Consensus 113 ~~---~~~~i~~~~~t~~~~~P 131 (358)
T 4gs5_A 113 AN---PLAGLDHADFDFVAMVP 131 (358)
T ss_dssp SC---TTTTCSSCCCSEEEECH
T ss_pred cc---HHHHHHHhCCeEEEcCh
Confidence 32 23346667777766543
No 98
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=21.53 E-value=2.1e+02 Score=31.02 Aligned_cols=89 Identities=3% Similarity=-0.061 Sum_probs=64.2
Q ss_pred CCCCcEEEEEccCCCCCCcEEEEccchHHHHH---HHHHHHhcCCCCCcEEEEeCCcceecchhHHhHHHhhcCcEEEEe
Q 006688 385 DAEDPLFLLYTSGSTGKPKGVLHTTGGYMVHT---ATTFKYAFDYKPSDVYWCTADCGWITGHSYVTYGPMLNGASVVVF 461 (635)
Q Consensus 385 ~~~d~a~Ii~TSGTTG~PKgV~~th~~l~~~~---~~~~~~~~~~~~~d~~l~~~~l~~~~g~~~~i~~~L~~G~~lvl~ 461 (635)
.|+.+|++. . .-.+|.+.+.... ...+. ..++.++|++...++-+... +..+++.+..|+..+..
T Consensus 40 ~Pd~~Av~~-~--------~~~lTY~eL~~~a~~lA~~L~-~~Gv~~g~~V~i~~~~s~~~--vva~lailkaGa~~vpl 107 (620)
T 4dg8_A 40 HPHREAIRD-R--------FGSVDYRQLLDSAEQLSDYLL-EHYPQPGVCLGVYGEYSRES--ITCLLAILLSGHHYLYI 107 (620)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHH-HHCCSSCCEEEEESSSCHHH--HHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEc-C--------CCcCcHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEeCCCHHH--HHHHHHHHHhCCEEEee
Confidence 577777653 1 1357888754322 22333 46899999999998877654 56789999999999988
Q ss_pred cCCCCCCChhHHHHHHHHcCCcEEEec
Q 006688 462 EGAPTYPDSGRSWDIVDKYKVTIFYTA 488 (635)
Q Consensus 462 ~~~~~~~d~~~l~~~i~~~~vt~l~~~ 488 (635)
+.. ...+++..++++.++.++...
T Consensus 108 d~~---~p~~~l~~il~~~~~~~vl~~ 131 (620)
T 4dg8_A 108 DLK---QPAAWNAELCRQVDCRLILDC 131 (620)
T ss_dssp CTT---SCHHHHHHHHHHHTEEEEEEC
T ss_pred Ccc---ChHHHHHHHHHhCCCcEEEec
Confidence 753 377889999999999988743
No 99
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=21.09 E-value=3.2e+02 Score=26.51 Aligned_cols=64 Identities=19% Similarity=0.116 Sum_probs=41.3
Q ss_pred HHHcC-CCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEec-CCCCCHHHHHHHHHhcCCeEEEEeCC
Q 006688 249 LKDIG-VKKGDAVIIYLPMLMELPIAMLACARIGAVHSVV-FAGFSSDSLAQRIMDCKPKVVITSNA 313 (635)
Q Consensus 249 L~~~G-v~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpl-d~~~~~~~l~~il~~~~~~~ii~~~~ 313 (635)
+.+.| +++|....|....+-.-....+++.+.|.-++.+ +...+ ......++..++++++++..
T Consensus 57 a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~-~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 57 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMS-TERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSC-HHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Confidence 34556 4566434444556666677777788999844443 34444 45556788899999998753
No 100
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=20.84 E-value=3.3e+02 Score=26.91 Aligned_cols=72 Identities=18% Similarity=0.167 Sum_probs=42.8
Q ss_pred CCCCCEEEEEcCCCchHHHHHHH-HHHhCCeEE--ecCCC--CCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHH
Q 006688 254 VKKGDAVIIYLPMLMELPIAMLA-CARIGAVHS--VVFAG--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326 (635)
Q Consensus 254 v~~gd~Vai~~~ns~e~iva~LA-~l~~Ga~~v--pld~~--~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~ 326 (635)
+++||.|.+..+.-......+.. +...|+.++ |++.+ ...+.++..++. ++++|+........+...+++++
T Consensus 115 ~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~l~~i 191 (420)
T 1t3i_A 115 LKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSE-KTKLVTVVHISNTLGCVNPAEEI 191 (420)
T ss_dssp CCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCT-TEEEEEEESBCTTTCBBCCHHHH
T ss_pred cCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCC-CceEEEEeCCcccccCcCCHHHH
Confidence 67899988877666554333332 335677544 44433 356777777653 67788777655445555554433
No 101
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=20.72 E-value=2e+02 Score=28.37 Aligned_cols=64 Identities=14% Similarity=0.054 Sum_probs=39.6
Q ss_pred CCCCCCEEEEEcCCCc------hHHHHHHHHH-HhCCeEEecCCC------------CCHHHHHHHHHhcCCeEEEEeCC
Q 006688 253 GVKKGDAVIIYLPMLM------ELPIAMLACA-RIGAVHSVVFAG------------FSSDSLAQRIMDCKPKVVITSNA 313 (635)
Q Consensus 253 Gv~~gd~Vai~~~ns~------e~iva~LA~l-~~Ga~~vpld~~------------~~~~~l~~il~~~~~~~ii~~~~ 313 (635)
-+++||+|+|++|.+. +.+-..+..+ ..|.-++.-..- ...+++..++.+-+++.|++...
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 4789999999999763 2333333333 456655543211 12345667778889999998765
Q ss_pred ccc
Q 006688 314 VKR 316 (635)
Q Consensus 314 ~~~ 316 (635)
-..
T Consensus 88 G~g 90 (327)
T 4h1h_A 88 GFN 90 (327)
T ss_dssp CSC
T ss_pred chh
Confidence 443
No 102
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=20.63 E-value=2.5e+02 Score=28.78 Aligned_cols=59 Identities=7% Similarity=0.043 Sum_probs=38.9
Q ss_pred CCCCCEEEEEcCCCchHHHHHH---------HHHHhCCeEEecCCC----CCHHHHHHHHHh-cCCeEEEEeC
Q 006688 254 VKKGDAVIIYLPMLMELPIAML---------ACARIGAVHSVVFAG----FSSDSLAQRIMD-CKPKVVITSN 312 (635)
Q Consensus 254 v~~gd~Vai~~~ns~e~iva~L---------A~l~~Ga~~vpld~~----~~~~~l~~il~~-~~~~~ii~~~ 312 (635)
+++||.|.+...........++ .+...|+.++.++.+ ...+.++..+++ .++++|+++.
T Consensus 112 l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~ 184 (427)
T 3i16_A 112 LRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQR 184 (427)
T ss_dssp CCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEEC
T ss_pred hCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEc
Confidence 6799988665413333333233 234568877777653 577889988875 5789999887
No 103
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=20.56 E-value=5.9e+02 Score=24.66 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=43.7
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHhCCe--EEecCCC--CCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHH
Q 006688 254 VKKGDAVIIYLPMLMELPIAMLACARIGAV--HSVVFAG--FSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKD 325 (635)
Q Consensus 254 v~~gd~Vai~~~ns~e~iva~LA~l~~Ga~--~vpld~~--~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~ 325 (635)
+++||.|.+..+ +.......-++...|+. .+|++.. ...+.++..++..++++|+........+...++++
T Consensus 95 ~~~gd~vl~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~ 169 (393)
T 3kgw_A 95 LEPGDSFLTGTN-GIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLDG 169 (393)
T ss_dssp CCTTCEEEEEES-SHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTT
T ss_pred CCCCCEEEEEeC-CchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHHH
Confidence 678999888743 32111223344566774 4455443 57888999988778888887766544455444443
No 104
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=20.46 E-value=2e+02 Score=30.50 Aligned_cols=68 Identities=6% Similarity=-0.020 Sum_probs=36.5
Q ss_pred EEEEeCCcceecch-hHHhHHHhhcCcEEEEecCCCCCCChhHHHHHHHHcCC--cEEEe---cHHHHHHHHhc
Q 006688 431 VYWCTADCGWITGH-SYVTYGPMLNGASVVVFEGAPTYPDSGRSWDIVDKYKV--TIFYT---APTLVRSLMRD 498 (635)
Q Consensus 431 ~~l~~~~l~~~~g~-~~~i~~~L~~G~~lvl~~~~~~~~d~~~l~~~i~~~~v--t~l~~---~Ps~l~~l~~~ 498 (635)
+++..+|+.|-..+ ++-+..+|..|.++++-+.+........+.+++.+.++ .++.+ .......|+++
T Consensus 165 VV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKpse~tp~t~~~l~~l~~eaGlP~gvv~vv~g~~~~~~~L~~~ 238 (521)
T 4e4g_A 165 IGAGITPFNFPGMIPMWMFAPAIACGNAFILKPSERDPSVPIRLAELMIEAGLPAGILNVVNGDKGAVDAILTH 238 (521)
T ss_dssp EEEEECCSSCTTHHHHHHHHHHHHTTCEEEEECCTTSTHHHHHHHHHHHHTTCCTTSEEECCCCHHHHHHHHTC
T ss_pred EEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHhCCCcCeEEEEeCChHHHHHHHhC
Confidence 44445554443221 34556788889888887654332244566677776532 23333 33444666554
No 105
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=20.46 E-value=3.8e+02 Score=26.20 Aligned_cols=71 Identities=10% Similarity=-0.005 Sum_probs=41.4
Q ss_pred CCCCCEEEEEcCCCchHHHHHHHHHHhCC--eEEecCCC--CCHHHHHHHHHh-cCCeEEEEeCCcccCCcccchHH
Q 006688 254 VKKGDAVIIYLPMLMELPIAMLACARIGA--VHSVVFAG--FSSDSLAQRIMD-CKPKVVITSNAVKRGPKAIHLKD 325 (635)
Q Consensus 254 v~~gd~Vai~~~ns~e~iva~LA~l~~Ga--~~vpld~~--~~~~~l~~il~~-~~~~~ii~~~~~~~~~~~~~~~~ 325 (635)
+++||.|.+..+...-.. ..-.+...|+ +++|++++ ...+.++..+++ .++++|+........+...++++
T Consensus 80 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~ 155 (392)
T 2z9v_A 80 ISPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDA 155 (392)
T ss_dssp CCTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHH
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHH
Confidence 578998877655333221 1112234576 45555543 467889888875 47788887765544454455443
No 106
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=20.37 E-value=2e+02 Score=28.21 Aligned_cols=62 Identities=24% Similarity=0.125 Sum_probs=42.4
Q ss_pred HHHHcCCCCCCEEEEEcCCCchHHHHHHHHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeC
Q 006688 248 YLKDIGVKKGDAVIIYLPMLMELPIAMLACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSN 312 (635)
Q Consensus 248 ~L~~~Gv~~gd~Vai~~~ns~e~iva~LA~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~ 312 (635)
.|+..++++|++|.|..--+.-.++++++....|+-.+.++. .+++ ..+++..++..+|-..
T Consensus 155 ~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~--~~~r-~~~~~~~Ga~~~i~~~ 216 (348)
T 4eez_A 155 AIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDI--NQDK-LNLAKKIGADVTINSG 216 (348)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEES--CHHH-HHHHHHTTCSEEEEC-
T ss_pred eecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEEC--cHHH-hhhhhhcCCeEEEeCC
Confidence 455678999999999987666666666666555665555554 3444 4567778888877543
No 107
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=20.28 E-value=3.6e+02 Score=26.96 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=44.1
Q ss_pred CCCCCEEEEEcCCCchHHHHHH-HHHHhCCeEEecCCCCCHHHHHHHHHhcCCeEEEEeCCcccCCcccchHHH
Q 006688 254 VKKGDAVIIYLPMLMELPIAML-ACARIGAVHSVVFAGFSSDSLAQRIMDCKPKVVITSNAVKRGPKAIHLKDI 326 (635)
Q Consensus 254 v~~gd~Vai~~~ns~e~iva~L-A~l~~Ga~~vpld~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~~~~~~ 326 (635)
+++||.|.+..+.-..+...+- .+...|+.++.++.. ..+.++..++. ++++|+.+......+...+++.+
T Consensus 98 ~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-d~~~l~~~i~~-~t~~v~l~~p~NptG~v~~l~~i 169 (404)
T 1e5e_A 98 LKAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-IPGEVKKHMKP-NTKIVYFETPANPTLKIIDMERV 169 (404)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-STTHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHH
T ss_pred hCCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-CHHHHHHhcCC-CCcEEEEECCCCCCCcccCHHHH
Confidence 5789998877665544433222 456678877776654 45666666643 67888877665555555554444
Done!