BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006689
(635 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NVA|A Chain A, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus
pdb|3NVA|B Chain B, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus
Length = 535
Score = 437 bits (1125), Expect = e-123, Method: Compositional matrix adjust.
Identities = 225/514 (43%), Positives = 327/514 (63%), Gaps = 26/514 (5%)
Query: 73 LDPYLNTDAGTMSPFEHXXXXXXXXXXXXXXXXXNYERFMDIKLTRDNNITTGKIYQSVI 132
+DPY+N DAGTM+P+ H +YERFMD+ +T+ NNIT GK+Y VI
Sbjct: 41 IDPYINVDAGTMNPYMHGEVFVTEDGAETDLDLGHYERFMDVNMTKYNNITAGKVYFEVI 100
Query: 133 DKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMP 192
KER+G YLG+TVQ++PH+TD+I+D MI K ++ ++E+GGT+GDIES+P
Sbjct: 101 KKEREGKYLGQTVQIIPHVTDQIKD------MIRYASKINNAEITLVEIGGTVGDIESLP 154
Query: 193 FIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRS 252
F+EA+ Q G N +H++LV L+V GE KTKP QHSV+ LR G+ P+ + R+
Sbjct: 155 FLEAVRQLKLEEGEDNVIFVHIALVEYLSVTGELKTKPLQHSVQELRRIGIQPDFIVGRA 214
Query: 253 TVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKE 312
T+ LDD + K++ F +V +I++ YDV + +P++L QK I L L+ ++
Sbjct: 215 TLPLDDETRRKIALFTNVKVDHIVSSYDVETSYEVPIILESQKLVSKILSRLKLE--DRQ 272
Query: 313 PLLKEWTSRAEICDGLH--EPVRIAMVGKYTGLSDAYLSILKALLHAS--VDLRKKLVID 368
L +W S G++ + + IA+VGKYT L D+Y+SI +A+ HAS + +R KL+
Sbjct: 273 VDLTDWISFVNNIKGINSKKTINIALVGKYTKLKDSYISIKEAIYHASAYIGVRPKLI-- 330
Query: 369 WIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPY 428
WI + DLE T+ N ++L +GI+V GFG+RG +GKI A KYAREH IP+
Sbjct: 331 WIESTDLESDTKNLN--------EILGNVNGIIVLPGFGSRGAEGKIKAIKYAREHNIPF 382
Query: 429 LGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSK-THMGGTMRLGSRR 487
LGIC G Q++++EFAR VL L +ANSTE +PNTK+P + + E T +GGTMRLG+++
Sbjct: 383 LGICFGFQLSIVEFARDVLGLSEANSTEINPNTKDPVITLLDEQKNVTQLGGTMRLGAQK 442
Query: 488 TYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVEL 547
+ + + +LYG + + ERHRHRYEVNP + LE+AGL +G E +EI+EL
Sbjct: 443 IILK-EGTIAYQLYGKKV-VYERHRHRYEVNPKYVDILEDAGLVVSGISENG-LVEIIEL 499
Query: 548 PNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAAC 581
P++ +F+ Q HPE+KSRP PSP++LG I A
Sbjct: 500 PSNKFFVATQAHPEFKSRPTNPSPIYLGFIRAVA 533
>pdb|1S1M|A Chain A, Crystal Structure Of E. Coli Ctp Synthetase
pdb|1S1M|B Chain B, Crystal Structure Of E. Coli Ctp Synthetase
pdb|2AD5|A Chain A, Mechanisms Of Feedback Regulation And Drug Resistance Of
Ctp Synthetases: Structure Of The E. Coli Ctps/ctp
Complex At 2.8- Angstrom Resolution.
pdb|2AD5|B Chain B, Mechanisms Of Feedback Regulation And Drug Resistance Of
Ctp Synthetases: Structure Of The E. Coli Ctps/ctp
Complex At 2.8- Angstrom Resolution
Length = 545
Score = 426 bits (1095), Expect = e-119, Method: Compositional matrix adjust.
Identities = 235/526 (44%), Positives = 324/526 (61%), Gaps = 36/526 (6%)
Query: 67 HFNLFGLDPYLNTDAGTMSPFEHXXXXXXXXXXXXXXXXXNYERFMDIKLTRDNNITTGK 126
+ + LDPY+N D GTMSP +H +YERF+ K++R NN TTG+
Sbjct: 35 NVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGR 94
Query: 127 IYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIG 186
IY V+ KER+GDYLG TVQV+PHIT+ I+ ERV ++G EG DV ++E+GGT+G
Sbjct: 95 IYSDVLRKERRGDYLGATVQVIPHITNAIK---ERV----LEGGEGH-DVVLVEIGGTVG 146
Query: 187 DIESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPN 246
DIES+PF+EA+ Q + +G + +H++LVP + GE KTKPTQHSV+ L G+ P+
Sbjct: 147 DIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPD 206
Query: 247 ILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNL 306
IL CRS A+ N + K++ FC+VPE+ +I+L DV +I+ IP LL+ Q + I K +L
Sbjct: 207 ILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSL 266
Query: 307 QGTTKEPLLKEWTSRA-EICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKL 365
E L EW E + + E V I MVGKY L DAY S+++AL H + R +
Sbjct: 267 --NCPEANLSEWEQVIFEEANPVSE-VTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSV 323
Query: 366 VIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHR 425
I I + D+E ++LKG D ILVPGGFG RGV+G I A++ARE+
Sbjct: 324 NIKLIDSQDVE-----------TRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENN 372
Query: 426 IPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPE-----------GSK 474
IPYLGICLGMQVA+I++AR V N+ +ANSTEF P+ K P V + E K
Sbjct: 373 IPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEK 432
Query: 475 THMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTG 534
+ +GGTMRLG+++ + D +LY T + ERHRHRYEVN ++ ++E+AGL G
Sbjct: 433 SDLGGTMRLGAQQCQL-VDDSLVRQLYNAPTIV-ERHRHRYEVNNMLLKQIEDAGLRVAG 490
Query: 535 KDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAA 580
+ Q +EI+E+PNHP+F+ QFHPE+ S P PLF G + AA
Sbjct: 491 RSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAA 536
>pdb|1VCO|A Chain A, Crystal Structure Of T.Th. Hb8 Ctp Synthetase Complex With
Glutamine
Length = 550
Score = 420 bits (1080), Expect = e-117, Method: Compositional matrix adjust.
Identities = 232/517 (44%), Positives = 325/517 (62%), Gaps = 28/517 (5%)
Query: 73 LDPYLNTDAGTMSPFEHXXXXXXXXXXXXXXXXXNYERFMDIKLTRDNNITTGKIYQSVI 132
+DPY+N DAGTM P+EH +YERF+D+ L+R NN+TTG++Y SVI
Sbjct: 50 IDPYVNVDAGTMRPYEHGEVFVTADGAETDLDIGHYERFLDMDLSRGNNLTTGQVYLSVI 109
Query: 133 DKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMP 192
KER+G+YL +TVQV+PHITDEI++ I +VA +E ++ V+E+GGT+GDIES+P
Sbjct: 110 QKERRGEYLSQTVQVIPHITDEIKERIRKVA------EEQKAEIVVVEVGGTVGDIESLP 163
Query: 193 FIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRS 252
F+EA+ QF + G GN +H++LVP L E KTKPTQHSV LRG G+ P+IL RS
Sbjct: 164 FLEAIRQFRFDEGEGNTLYLHLTLVPYLETSEEFKTKPTQHSVATLRGVGIQPDILVLRS 223
Query: 253 TVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKE 312
+ + V+ K++ F +V ++ + V +++ +PLLL +Q A+ + L L+
Sbjct: 224 ARPVPEEVRRKVALFTNVRPGHVFSSPTVEHLYEVPLLLEEQGLGRAVERALGLEAVI-- 281
Query: 313 PLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPA 372
P L W + V+IA+ GKY + DAYLS+L+AL HA + R ++ + W+ A
Sbjct: 282 PNLSFWQEAVRVLKHPERTVKIAIAGKYVKMPDAYLSLLEALRHAGIKNRARVEVKWVDA 341
Query: 373 CDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 432
LE A +E + GILVPGGFG RG++GK+ AA+YARE +IPYLGIC
Sbjct: 342 ESLEAADLEEA----------FRDVSGILVPGGFGVRGIEGKVRAAQYARERKIPYLGIC 391
Query: 433 LGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTH-MGGTMRLGSRRTYFQ 491
LG+Q+AVIEFAR+V L+ ANSTEFDP+T +P + MPE + +GGTMRLG +
Sbjct: 392 LGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGD--WPMR 449
Query: 492 IKDCKSA-KLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTG-----KDETSQRMEIV 545
IK +LYG + ERHRHRYEVNP + LE AGL + + + +E +
Sbjct: 450 IKPGTLLHRLYGKEEVL-ERHRHRYEVNPLYVDGLERAGLVVSATTPGMRGRGAGLVEAI 508
Query: 546 ELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACG 582
EL +HP+F+G+Q HPE+KSRP +PSP F+G + AA
Sbjct: 509 ELKDHPFFLGLQSHPEFKSRPMRPSPPFVGFVEAALA 545
>pdb|1VCM|A Chain A, Crystal Structure Of T.Th. Hb8 Ctp Synthetase
pdb|1VCN|A Chain A, Crystal Structure Of T.th. Hb8 Ctp Synthetase Complex With
Sulfate Anion
Length = 550
Score = 420 bits (1079), Expect = e-117, Method: Compositional matrix adjust.
Identities = 232/517 (44%), Positives = 324/517 (62%), Gaps = 28/517 (5%)
Query: 73 LDPYLNTDAGTMSPFEHXXXXXXXXXXXXXXXXXNYERFMDIKLTRDNNITTGKIYQSVI 132
+DPY+N DAGTM P+EH +YERF+D+ L+R NN+TTG++Y SVI
Sbjct: 50 IDPYVNVDAGTMRPYEHGEVFVTADGAETDLDIGHYERFLDMDLSRGNNLTTGQVYLSVI 109
Query: 133 DKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMP 192
KER+G+YL +TVQV+PHITDEI++ I +VA +E ++ V+E+GGT+GDIES+P
Sbjct: 110 QKERRGEYLSQTVQVIPHITDEIKERIRKVA------EEQKAEIVVVEVGGTVGDIESLP 163
Query: 193 FIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRS 252
F+EA+ QF + G GN +H++LVP L E KTKPTQHSV LRG G+ P+IL RS
Sbjct: 164 FLEAIRQFRFDEGEGNTLYLHLTLVPYLETSEEFKTKPTQHSVATLRGVGIQPDILVLRS 223
Query: 253 TVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKE 312
+ + V+ K++ F +V ++ + V +++ +PLLL +Q A+ + L L+
Sbjct: 224 ARPVPEEVRRKVALFTNVRPGHVFSSPTVEHLYEVPLLLEEQGLGRAVERALGLEAVI-- 281
Query: 313 PLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPA 372
P L W + V+IA+ GKY + DAYLS+L+AL HA + R ++ + W+ A
Sbjct: 282 PNLSFWQEAVRVLKHPERTVKIAIAGKYVKMPDAYLSLLEALRHAGIKNRARVEVKWVDA 341
Query: 373 CDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 432
LE A E + GILVPGGFG RG++GK+ AA+YARE +IPYLGIC
Sbjct: 342 ESLEAADLDEA----------FRDVSGILVPGGFGVRGIEGKVRAAQYARERKIPYLGIC 391
Query: 433 LGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTH-MGGTMRLGSRRTYFQ 491
LG+Q+AVIEFAR+V L+ ANSTEFDP+T +P + MPE + +GGTMRLG +
Sbjct: 392 LGLQIAVIEFARNVAGLKGANSTEFDPHTPHPVIDLMPEQLEVEGLGGTMRLGD--WPMR 449
Query: 492 IKDCKSA-KLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTG-----KDETSQRMEIV 545
IK +LYG + ERHRHRYEVNP + LE AGL + + + +E +
Sbjct: 450 IKPGTLLHRLYGKEEVL-ERHRHRYEVNPLYVDGLERAGLVVSATTPGMRGRGAGLVEAI 508
Query: 546 ELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACG 582
EL +HP+F+G+Q HPE+KSRP +PSP F+G + AA
Sbjct: 509 ELKDHPFFLGLQSHPEFKSRPMRPSPPFVGFVEAALA 545
>pdb|2VKT|A Chain A, Human Ctp Synthetase 2 - Glutaminase Domain
Length = 289
Score = 303 bits (776), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 146/256 (57%), Positives = 187/256 (73%)
Query: 334 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 393
IA+VGKYT L D Y S+ KAL H+++ + KL + +I + DLE TE E+P + AW+
Sbjct: 28 IALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQK 87
Query: 394 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDAN 453
L ADGILVPGGFG RG GK+ A +AR +IP+LG+CLGMQ+AVIEFAR+ LNL+DA+
Sbjct: 88 LCKADGILVPGGFGIRGTLGKLQAISWARTKKIPFLGVCLGMQLAVIEFARNCLNLKDAD 147
Query: 454 STEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 513
STEF PN P VI MPE + ++GGTMRLG RRT F+ ++ KLYG+ FI+ERHRH
Sbjct: 148 STEFRPNAPVPLVIDMPEHNPGNLGGTMRLGIRRTVFKTENSILRKLYGDVPFIEERHRH 207
Query: 514 RYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLF 573
R+EVNP++I + E LSF G+D RMEI+EL NHPYF+GVQFHPE+ SRP KPSP +
Sbjct: 208 RFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELANHPYFVGVQFHPEFSSRPMKPSPPY 267
Query: 574 LGLIAAACGQLDTLIQ 589
LGL+ AA G L+ +Q
Sbjct: 268 LGLLLAATGNLNAYLQ 283
>pdb|2V4U|A Chain A, Human Ctp Synthetase 2 - Glutaminase Domain In Complex
With 5-Oxo-L-Norleucine
Length = 289
Score = 299 bits (766), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 145/256 (56%), Positives = 186/256 (72%)
Query: 334 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 393
IA+VGKYT L D Y S+ KAL H+++ + KL + +I + DLE TE E+P + AW+
Sbjct: 28 IALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQK 87
Query: 394 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDAN 453
L ADGILVPGGFG RG GK+ A +AR +IP+LG+ LGMQ+AVIEFAR+ LNL+DA+
Sbjct: 88 LCKADGILVPGGFGIRGTLGKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCLNLKDAD 147
Query: 454 STEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRH 513
STEF PN P VI MPE + ++GGTMRLG RRT F+ ++ KLYG+ FI+ERHRH
Sbjct: 148 STEFRPNAPVPLVIDMPEHNPGNLGGTMRLGIRRTVFKTENSILRKLYGDVPFIEERHRH 207
Query: 514 RYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLF 573
R+EVNP++I + E LSF G+D RMEI+EL NHPYF+GVQFHPE+ SRP KPSP +
Sbjct: 208 RFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELANHPYFVGVQFHPEFSSRPMKPSPPY 267
Query: 574 LGLIAAACGQLDTLIQ 589
LGL+ AA G L+ +Q
Sbjct: 268 LGLLLAATGNLNAYLQ 283
>pdb|2VO1|A Chain A, Crystal Structure Of The Synthetase Domain Of Human Ctp
Synthetase
pdb|2VO1|B Chain B, Crystal Structure Of The Synthetase Domain Of Human Ctp
Synthetase
Length = 295
Score = 280 bits (715), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 137/240 (57%), Positives = 171/240 (71%)
Query: 67 HFNLFGLDPYLNTDAGTMSPFEHXXXXXXXXXXXXXXXXXNYERFMDIKLTRDNNITTGK 126
H +DPY+N DAGT SP+EH NYERF+DI+LT+DNN+TTGK
Sbjct: 55 HVTSIKIDPYINIDAGTFSPYEHGEVFVLDDGGEVDLDLGNYERFLDIRLTKDNNLTTGK 114
Query: 127 IYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIG 186
IYQ VI+KERKGDYLGKTVQVVPHITD IQ+W+ R A+IPVD VCVIELGGT+G
Sbjct: 115 IYQYVINKERKGDYLGKTVQVVPHITDAIQEWVMRQALIPVDEDGLEPQVCVIELGGTVG 174
Query: 187 DIESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPN 246
DIESMPFIEA QF ++V NFC IHVSLVP + GEQKTKPTQ+SVR LRG GL+P+
Sbjct: 175 DIESMPFIEAFRQFQFKVKRENFCNIHVSLVPQPSSTGEQKTKPTQNSVRELRGLGLSPD 234
Query: 247 ILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNL 306
++ CR + LD +VK K+S FCHV + +I ++DV +I+ +PLLL +Q + + L+L
Sbjct: 235 LVVCRCSNPLDTSVKEKISMFCHVEPEQVICVHDVSSIYRVPLLLEEQGVVDYFLRRLDL 294
>pdb|3IHL|A Chain A, Human Ctps2 Crystal Structure
pdb|3IHL|B Chain B, Human Ctps2 Crystal Structure
Length = 282
Score = 270 bits (691), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 126/222 (56%), Positives = 161/222 (72%)
Query: 73 LDPYLNTDAGTMSPFEHXXXXXXXXXXXXXXXXXNYERFMDIKLTRDNNITTGKIYQSVI 132
+DPY+N DAGT SP+EH NYERF+DI L +DNNITTGKIYQ VI
Sbjct: 39 IDPYINIDAGTFSPYEHGEVFVLNDGGEVDLDLGNYERFLDINLYKDNNITTGKIYQHVI 98
Query: 133 DKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMP 192
+KER+GDYLGKTVQVVPHITD +Q+W+ A +PVDG + +CVIELGGTIGDIE MP
Sbjct: 99 NKERRGDYLGKTVQVVPHITDAVQEWVMNQAKVPVDGNKEEPQICVIELGGTIGDIEGMP 158
Query: 193 FIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRS 252
F+EA QF ++ NFC IHVSLVP L+ GEQKTKPTQ+SVR LRG GL+P+++ CRS
Sbjct: 159 FVEAFRQFQFKAKRENFCNIHVSLVPQLSATGEQKTKPTQNSVRALRGLGLSPDLIVCRS 218
Query: 253 TVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQ 294
+ ++ VK K+S FCHV + +I ++DV + + +P+LL +Q
Sbjct: 219 STPIEMAVKEKISMFCHVNPEQVICIHDVSSTYRVPVLLEEQ 260
>pdb|2W7T|A Chain A, Trypanosoma Brucei Ctps - Glutaminase Domain With Bound
Acivicin
Length = 273
Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/254 (43%), Positives = 145/254 (57%), Gaps = 13/254 (5%)
Query: 332 VRIAMVGKY-TGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAA 390
VRIA VGKY D Y S+L+ H + L+ +L I ++ D+ E E P+A A
Sbjct: 9 VRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYV------DSEELEGPNA-DEA 61
Query: 391 WKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLR 450
K L G DGI VPGGFGNRGV GK AA+ AR + IPY G+ LGMQVAVIE +R+V+
Sbjct: 62 RKALLGCDGIFVPGGFGNRGVDGKCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVVGWS 121
Query: 451 DANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDER 510
DANS EF+ + + V M + + MG M LG+ Y K AK+Y + ER
Sbjct: 122 DANSEEFNKESTHQVVRIM-DCDRNKMGANMHLGACDVYIVEKSSIMAKIYSKSNIVVER 180
Query: 511 HRHRYEVNPDMIARLENAGLSFTGKDE----TSQRMEIVELPNHPYFIGVQFHPEYKSRP 566
HRHRYEVN L AGL + + + R+E VE P+ +F+ VQFHPE+ S P
Sbjct: 181 HRHRYEVNTAYFEDLRKAGLCISAVTDPTFSSRCRVEAVENPSLRFFLAVQFHPEFISTP 240
Query: 567 GKPSPLFLGLIAAA 580
P+P +L +AAA
Sbjct: 241 MDPAPTYLSFMAAA 254
>pdb|2A9V|A Chain A, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|B Chain B, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|C Chain C, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|D Chain D, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
Length = 212
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 394 LKGADGILVPGGFGNRGVQGKILAA--KYAREHRIPYLGICLGMQVAVIEFARSVLNLR 450
L G DG+++ GG N + L + KY +H P LGIC+G Q + F SV+ +
Sbjct: 52 LDGLDGLVLSGGAPNIDEELDKLGSVGKYIDDHNYPILGICVGAQFIALHFGASVVKAK 110
>pdb|3VX3|A Chain A, Crystal Structure Of [nife] Hydrogenase Maturation Protein
Hypb From Thermococcus Kodakarensis Kod1
pdb|3VX3|B Chain B, Crystal Structure Of [nife] Hydrogenase Maturation Protein
Hypb From Thermococcus Kodakarensis Kod1
Length = 248
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 47/124 (37%), Gaps = 8/124 (6%)
Query: 465 CVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIAR 524
VI MP G + +R R + + L R I+ ++V I
Sbjct: 129 LVIDMPPGLGDQLLDVLRFLKRGEFLVVATPSKLSLNVVRKLIELLKEEGHKV----IGV 184
Query: 525 LENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPL----FLGLIAAA 580
+EN L D+ ++ E PY +G+ F+P+ ++ G L F G +
Sbjct: 185 VENMKLRSEQLDDEKDVEKLAEEFGVPYLVGIPFYPDLDAKVGNVEELMKTEFAGKVREL 244
Query: 581 CGQL 584
G+L
Sbjct: 245 AGRL 248
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
Length = 525
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 399 GILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEF 457
GI++ GG + + A +Y E +P G+C GMQ ++ V +N EF
Sbjct: 53 GIILSGGPESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHV---EASNEREF 108
>pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|B Chain B, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|C Chain C, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|D Chain D, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
Length = 527
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 14/97 (14%)
Query: 373 CDLEDATEKE-NPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 431
CD+++ T ++ NP GI++ GG + + A + E P LGI
Sbjct: 42 CDIDEETIRDFNPH-------------GIILSGGPETVTLSHTLRAPAFIFEIGCPVLGI 88
Query: 432 CLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIF 468
C GMQ + V A NP +F
Sbjct: 89 CYGMQTMAYQLGGKVNRTAKAEFGHAQLRVLNPAFLF 125
>pdb|1OX4|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|A Chain A, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
pdb|1OX6|B Chain B, Towards Understanding The Mechanism Of The Complex
Cyclization Reaction Catalyzed By Imidazole
Glycerophosphate Synthase
Length = 555
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 61/164 (37%), Gaps = 28/164 (17%)
Query: 408 NRGVQGKILAAKYAREHRIPYLGICLGMQ---VAVIEFARSV-LNLRDANSTEFDPNTKN 463
NRG + I + E P +GIC+G+Q +E +S LN D + FD + K
Sbjct: 65 NRGFEKPI---REYIESGKPIMGICVGLQALFAGSVESPKSTGLNYIDFKLSRFDDSEKP 121
Query: 464 PCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIA 523
+PE +G + S +F + Y F+ H +N +
Sbjct: 122 -----VPE-----IGWNSCIPSENLFFGLDP------YKRYYFV---HSFAAILNSEKKK 162
Query: 524 RLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPG 567
LEN G S+ E + N QFHPE + G
Sbjct: 163 NLENDGWKIAKAKYGSE--EFIAAVNKNNIFATQFHPEKSGKAG 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,364,921
Number of Sequences: 62578
Number of extensions: 842798
Number of successful extensions: 2041
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1996
Number of HSP's gapped (non-prelim): 17
length of query: 635
length of database: 14,973,337
effective HSP length: 105
effective length of query: 530
effective length of database: 8,402,647
effective search space: 4453402910
effective search space used: 4453402910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)