Query 006689
Match_columns 635
No_of_seqs 488 out of 3116
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 13:04:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006689.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006689hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2387 CTP synthase (UTP-ammo 100.0 4E-211 8E-216 1642.5 43.8 553 36-593 1-560 (585)
2 COG0504 PyrG CTP synthase (UTP 100.0 1E-204 3E-209 1621.4 46.6 523 36-585 1-531 (533)
3 PLN02327 CTP synthase 100.0 1E-201 3E-206 1641.8 50.5 549 36-590 1-556 (557)
4 PRK05380 pyrG CTP synthetase; 100.0 4E-191 1E-195 1556.3 49.6 523 35-584 1-530 (533)
5 TIGR00337 PyrG CTP synthase. C 100.0 3E-189 6E-194 1542.1 49.6 518 36-579 1-525 (525)
6 PF06418 CTP_synth_N: CTP synt 100.0 2E-134 5E-139 1019.1 15.7 270 36-318 1-276 (276)
7 cd03113 CTGs CTP synthetase (C 100.0 4E-126 8E-131 953.2 21.5 249 37-296 1-255 (255)
8 PRK06186 hypothetical protein; 100.0 4E-63 8.6E-68 498.2 23.9 228 331-582 1-228 (229)
9 cd01746 GATase1_CTP_Synthase T 100.0 4.6E-46 9.9E-51 377.7 23.1 234 332-577 1-235 (235)
10 COG0505 CarA Carbamoylphosphat 100.0 5.6E-47 1.2E-51 395.7 16.2 279 236-584 67-366 (368)
11 PRK12564 carbamoyl phosphate s 100.0 2E-40 4.3E-45 354.6 17.5 273 237-579 69-359 (360)
12 TIGR01368 CPSaseIIsmall carbam 100.0 1.4E-40 3.1E-45 355.2 16.1 276 236-581 64-357 (358)
13 PRK12838 carbamoyl phosphate s 100.0 2E-39 4.4E-44 346.0 18.5 274 237-582 67-352 (354)
14 PLN02771 carbamoyl-phosphate s 100.0 1.7E-38 3.8E-43 342.6 14.9 266 237-573 121-415 (415)
15 CHL00197 carA carbamoyl-phosph 100.0 4E-38 8.7E-43 338.4 15.1 277 236-583 70-377 (382)
16 KOG0370 Multifunctional pyrimi 100.0 1.9E-32 4E-37 307.9 16.5 296 212-587 50-359 (1435)
17 COG0118 HisH Glutamine amidotr 99.9 8.4E-27 1.8E-31 229.1 16.6 189 332-580 2-203 (204)
18 PF00117 GATase: Glutamine ami 99.9 9.2E-27 2E-31 226.9 13.0 181 348-579 11-192 (192)
19 cd01744 GATase1_CPSase Small c 99.9 4.8E-25 1E-29 214.4 18.8 176 334-577 1-178 (178)
20 PRK08007 para-aminobenzoate sy 99.9 5.1E-25 1.1E-29 216.3 18.3 183 334-578 2-186 (187)
21 PLN02335 anthranilate synthase 99.9 7.8E-25 1.7E-29 220.7 19.0 199 329-585 16-218 (222)
22 PRK05670 anthranilate synthase 99.9 3.2E-24 6.9E-29 210.4 18.5 185 334-580 2-188 (189)
23 COG0512 PabA Anthranilate/para 99.9 5.6E-24 1.2E-28 208.1 19.1 188 332-579 2-190 (191)
24 COG2071 Predicted glutamine am 99.9 1.4E-24 3E-29 218.4 15.1 167 390-583 54-241 (243)
25 TIGR00888 guaA_Nterm GMP synth 99.9 6.3E-24 1.4E-28 207.8 18.5 184 334-582 1-186 (188)
26 CHL00101 trpG anthranilate syn 99.9 6.6E-24 1.4E-28 208.8 17.9 187 334-580 2-189 (190)
27 PRK06895 putative anthranilate 99.9 1.5E-23 3.2E-28 206.0 19.8 186 332-579 2-188 (190)
28 TIGR00566 trpG_papA glutamine 99.9 1.1E-23 2.4E-28 206.9 18.9 185 334-578 2-187 (188)
29 PRK07649 para-aminobenzoate/an 99.9 1.5E-23 3.3E-28 207.5 18.3 188 334-582 2-190 (195)
30 PRK06774 para-aminobenzoate sy 99.9 3.6E-23 7.9E-28 203.2 17.8 184 334-578 2-190 (191)
31 PRK11366 puuD gamma-glutamyl-g 99.9 1E-22 2.2E-27 209.2 21.3 169 392-583 57-247 (254)
32 cd01743 GATase1_Anthranilate_S 99.9 9.8E-23 2.1E-27 198.6 18.4 183 334-577 1-184 (184)
33 PRK00758 GMP synthase subunit 99.9 7.9E-23 1.7E-27 199.4 17.6 181 334-582 2-183 (184)
34 PRK07765 para-aminobenzoate sy 99.9 1.3E-22 2.7E-27 203.6 19.5 191 332-580 1-192 (214)
35 cd01742 GATase1_GMP_Synthase T 99.9 7.7E-23 1.7E-27 198.0 16.4 181 334-577 1-181 (181)
36 PRK08857 para-aminobenzoate sy 99.9 5.7E-22 1.2E-26 195.4 18.9 186 334-579 2-192 (193)
37 PRK05637 anthranilate synthase 99.9 1E-21 2.2E-26 196.4 19.4 201 332-582 2-207 (208)
38 PLN02347 GMP synthetase 99.9 6.2E-22 1.4E-26 222.0 19.3 193 333-588 12-210 (536)
39 TIGR01823 PabB-fungal aminodeo 99.9 9.6E-22 2.1E-26 227.9 20.3 200 330-584 4-208 (742)
40 TIGR01815 TrpE-clade3 anthrani 99.9 1.7E-21 3.6E-26 224.6 19.5 194 330-582 515-710 (717)
41 PRK03619 phosphoribosylformylg 99.9 1.8E-21 3.9E-26 195.9 16.7 195 332-578 1-218 (219)
42 PRK13566 anthranilate synthase 99.9 3.7E-21 8E-26 222.0 20.2 193 330-581 525-719 (720)
43 PRK13170 hisH imidazole glycer 99.9 8.4E-21 1.8E-25 187.8 18.3 187 332-578 1-195 (196)
44 PF07722 Peptidase_C26: Peptid 99.9 2.3E-21 4.9E-26 194.9 10.9 171 348-561 27-217 (217)
45 cd01745 GATase1_2 Subgroup of 99.8 1.4E-20 3E-25 185.1 15.8 149 348-577 22-189 (189)
46 PRK00074 guaA GMP synthase; Re 99.8 1.4E-20 3E-25 210.7 16.5 191 332-587 4-196 (511)
47 PRK14607 bifunctional glutamin 99.8 2.1E-20 4.6E-25 210.2 17.6 189 334-582 2-191 (534)
48 PRK13146 hisH imidazole glycer 99.8 3.9E-20 8.4E-25 184.9 17.3 194 332-580 2-208 (209)
49 CHL00188 hisH imidazole glycer 99.8 4.3E-20 9.4E-25 185.0 17.2 192 332-579 2-209 (210)
50 PRK13141 hisH imidazole glycer 99.8 1.3E-19 2.7E-24 179.9 18.1 195 333-582 1-204 (205)
51 PRK14004 hisH imidazole glycer 99.8 3.2E-19 6.9E-24 178.8 18.3 196 334-579 2-209 (210)
52 PRK13181 hisH imidazole glycer 99.8 3.5E-19 7.5E-24 176.2 17.0 178 334-578 2-198 (199)
53 PLN02889 oxo-acid-lyase/anthra 99.8 3.4E-19 7.5E-24 208.3 19.6 196 330-583 80-338 (918)
54 PRK13152 hisH imidazole glycer 99.8 6.9E-19 1.5E-23 174.6 18.4 186 334-578 2-200 (201)
55 cd01748 GATase1_IGP_Synthase T 99.8 3.5E-19 7.6E-24 175.7 16.1 186 334-577 1-198 (198)
56 PRK09522 bifunctional glutamin 99.8 2.7E-19 5.8E-24 200.9 17.1 188 332-582 2-192 (531)
57 PRK13143 hisH imidazole glycer 99.8 1.8E-18 3.8E-23 171.6 19.3 194 332-580 1-198 (200)
58 PRK13142 hisH imidazole glycer 99.8 7.7E-19 1.7E-23 173.8 14.1 176 334-578 2-186 (192)
59 cd01747 GATase1_Glutamyl_Hydro 99.8 2.2E-18 4.9E-23 179.0 16.7 175 349-569 24-221 (273)
60 PRK06490 glutamine amidotransf 99.8 1.3E-17 2.8E-22 170.2 19.6 181 330-578 6-191 (239)
61 PRK09065 glutamine amidotransf 99.8 4.8E-18 1E-22 173.0 15.7 140 394-579 52-199 (237)
62 cd01741 GATase1_1 Subgroup of 99.8 8.6E-18 1.9E-22 163.9 16.5 137 393-577 43-188 (188)
63 PLN02832 glutamine amidotransf 99.8 9.1E-18 2E-22 171.9 16.6 201 332-582 2-216 (248)
64 TIGR01855 IMP_synth_hisH imida 99.8 1.1E-17 2.5E-22 165.4 16.4 187 334-579 1-196 (196)
65 PRK13527 glutamine amidotransf 99.8 2.8E-17 6E-22 162.9 18.5 192 332-582 1-199 (200)
66 COG0518 GuaA GMP synthase - Gl 99.8 1E-17 2.2E-22 166.6 14.3 181 333-578 3-191 (198)
67 PLN02617 imidazole glycerol ph 99.8 3.4E-17 7.5E-22 183.9 20.0 197 331-584 6-214 (538)
68 PRK05665 amidotransferase; Pro 99.7 4.1E-17 8.9E-22 166.7 18.6 133 393-565 54-191 (240)
69 PRK07053 glutamine amidotransf 99.7 2.9E-17 6.3E-22 167.2 17.4 172 332-565 3-183 (234)
70 PRK13525 glutamine amidotransf 99.7 4E-17 8.6E-22 160.9 17.2 182 332-581 2-188 (189)
71 PRK07567 glutamine amidotransf 99.7 7.4E-17 1.6E-21 164.9 16.5 132 393-565 48-195 (242)
72 TIGR01737 FGAM_synth_I phospho 99.7 2.1E-16 4.6E-21 159.9 17.1 191 332-578 1-225 (227)
73 KOG0026 Anthranilate synthase, 99.7 1.2E-16 2.7E-21 152.3 14.0 195 333-584 20-218 (223)
74 KOG1224 Para-aminobenzoate (PA 99.7 6.6E-16 1.4E-20 167.9 16.1 195 330-581 13-218 (767)
75 TIGR03800 PLP_synth_Pdx2 pyrid 99.7 1.7E-15 3.7E-20 149.0 16.7 177 333-577 1-183 (184)
76 PRK08250 glutamine amidotransf 99.7 4.2E-15 9E-20 151.4 18.3 130 393-564 42-184 (235)
77 KOG0623 Glutamine amidotransfe 99.6 3.2E-15 7E-20 155.8 12.4 191 334-578 4-206 (541)
78 cd01749 GATase1_PB Glutamine A 99.5 1.7E-13 3.6E-18 134.4 13.7 169 346-577 9-183 (183)
79 PRK13526 glutamine amidotransf 99.4 9.8E-12 2.1E-16 122.0 14.6 80 332-440 3-87 (179)
80 PRK05368 homoserine O-succinyl 99.3 2.2E-11 4.7E-16 128.4 16.7 210 330-583 34-254 (302)
81 PRK01175 phosphoribosylformylg 99.3 4E-11 8.8E-16 124.3 18.2 212 331-580 3-257 (261)
82 KOG1622 GMP synthase [Nucleoti 99.3 1.7E-12 3.8E-17 139.7 7.8 154 395-589 58-213 (552)
83 cd01740 GATase1_FGAR_AT Type 1 99.3 1.2E-10 2.6E-15 119.0 16.6 178 346-566 11-218 (238)
84 KOG3179 Predicted glutamine sy 99.2 1.6E-11 3.4E-16 121.2 8.0 135 392-565 55-197 (245)
85 COG0047 PurL Phosphoribosylfor 99.2 3.4E-09 7.3E-14 106.8 20.1 196 331-579 2-229 (231)
86 COG0311 PDX2 Predicted glutami 99.1 1.3E-09 2.9E-14 106.6 13.8 82 332-441 1-88 (194)
87 PRK01077 cobyrinic acid a,c-di 99.1 7.6E-09 1.7E-13 114.9 21.2 89 331-442 245-339 (451)
88 PF01174 SNO: SNO glutamine am 99.0 5.4E-09 1.2E-13 103.0 12.0 73 343-439 4-82 (188)
89 TIGR00379 cobB cobyrinic acid 98.9 1.6E-07 3.5E-12 104.4 21.8 88 331-441 244-337 (449)
90 KOG1559 Gamma-glutamyl hydrola 98.8 2.7E-09 5.8E-14 107.9 5.0 181 348-567 80-275 (340)
91 PRK00784 cobyric acid synthase 98.8 1E-07 2.3E-12 106.9 17.7 84 331-441 251-341 (488)
92 TIGR00313 cobQ cobyric acid sy 98.7 5.2E-07 1.1E-11 101.1 18.2 83 331-441 247-335 (475)
93 PF00988 CPSase_sm_chain: Carb 98.7 1.2E-09 2.7E-14 102.0 -2.4 79 214-301 52-130 (131)
94 PF13507 GATase_5: CobB/CobQ-l 98.6 1.3E-06 2.8E-11 90.8 18.0 196 332-567 2-233 (259)
95 TIGR01857 FGAM-synthase phosph 98.6 3.6E-06 7.8E-11 102.8 20.9 222 330-578 976-1237(1239)
96 cd01750 GATase1_CobQ Type 1 gl 98.5 1.6E-07 3.4E-12 93.2 7.4 82 334-441 1-88 (194)
97 PRK05297 phosphoribosylformylg 98.5 2.1E-06 4.6E-11 105.9 17.8 198 330-567 1034-1263(1290)
98 PRK13896 cobyrinic acid a,c-di 98.5 6.6E-06 1.4E-10 91.3 18.7 86 332-441 234-324 (433)
99 PLN03206 phosphoribosylformylg 98.4 8.6E-06 1.9E-10 100.2 17.5 205 330-567 1036-1276(1307)
100 PRK06278 cobyrinic acid a,c-di 98.3 8.1E-07 1.7E-11 99.5 7.7 78 332-441 1-81 (476)
101 cd03130 GATase1_CobB Type 1 gl 98.3 1.4E-06 3E-11 86.8 7.4 74 346-441 12-91 (198)
102 TIGR01735 FGAM_synt phosphorib 98.2 1.2E-05 2.6E-10 99.4 15.3 197 330-566 1054-1283(1310)
103 KOG3210 Imidazoleglycerol-phos 98.0 6.6E-05 1.4E-09 72.9 12.7 87 333-441 13-107 (226)
104 PF04204 HTS: Homoserine O-suc 98.0 0.00013 2.8E-09 77.3 14.5 209 330-585 33-255 (298)
105 cd01653 GATase1 Type 1 glutami 97.8 0.00012 2.5E-09 61.6 8.7 76 346-438 13-92 (115)
106 cd03144 GATase1_ScBLP_like Typ 97.7 3E-05 6.5E-10 71.4 4.5 84 334-438 2-90 (114)
107 TIGR01739 tegu_FGAM_synt herpe 97.7 0.001 2.2E-08 82.3 17.5 90 329-439 927-1032(1202)
108 cd03146 GAT1_Peptidase_E Type 97.7 0.00011 2.4E-09 73.9 7.4 90 329-439 29-128 (212)
109 TIGR01001 metA homoserine O-su 97.6 0.00069 1.5E-08 71.6 13.0 196 330-566 34-241 (300)
110 cd03131 GATase1_HTS Type 1 glu 97.6 0.00026 5.6E-09 69.8 9.3 52 394-445 60-118 (175)
111 PHA03366 FGAM-synthase; Provis 97.6 0.00081 1.8E-08 83.6 15.4 91 328-439 1025-1131(1304)
112 PF07685 GATase_3: CobB/CobQ-l 97.5 0.00012 2.5E-09 70.5 4.4 50 393-442 4-59 (158)
113 cd03128 GAT_1 Type 1 glutamine 97.4 0.00041 8.9E-09 55.6 6.7 75 347-438 14-92 (92)
114 PF09825 BPL_N: Biotin-protein 96.7 0.12 2.5E-06 56.9 19.1 91 333-439 2-96 (367)
115 TIGR01382 PfpI intracellular p 96.6 0.0096 2.1E-07 56.7 8.8 44 396-439 60-106 (166)
116 PRK11780 isoprenoid biosynthes 96.4 0.005 1.1E-07 62.7 5.9 49 394-442 83-145 (217)
117 cd03133 GATase1_ES1 Type 1 glu 96.2 0.0077 1.7E-07 61.2 5.9 49 394-442 80-142 (213)
118 cd03169 GATase1_PfpI_1 Type 1 95.9 0.011 2.3E-07 57.6 5.1 45 396-440 76-123 (180)
119 PRK05282 (alpha)-aspartyl dipe 95.9 0.024 5.3E-07 58.4 7.9 105 314-441 16-129 (233)
120 COG1797 CobB Cobyrinic acid a, 95.5 0.16 3.5E-06 56.6 12.8 195 332-580 246-450 (451)
121 cd03132 GATase1_catalase Type 95.4 0.097 2.1E-06 48.8 9.3 102 332-439 2-109 (142)
122 cd03134 GATase1_PfpI_like A ty 95.0 0.035 7.5E-07 52.8 5.0 45 395-439 61-108 (165)
123 COG1492 CobQ Cobyric acid synt 94.7 0.038 8.2E-07 62.2 5.0 48 393-440 287-340 (486)
124 cd03147 GATase1_Ydr533c_like T 94.6 0.051 1.1E-06 55.9 5.3 47 394-440 92-142 (231)
125 COG0693 ThiJ Putative intracel 94.2 0.057 1.2E-06 52.7 4.5 102 332-439 3-113 (188)
126 PRK04155 chaperone protein Hch 93.9 0.078 1.7E-06 56.3 5.2 46 394-439 145-194 (287)
127 PF01965 DJ-1_PfpI: DJ-1/PfpI 93.8 0.047 1E-06 51.5 3.0 45 395-439 36-85 (147)
128 TIGR01383 not_thiJ DJ-1 family 93.8 0.32 6.8E-06 46.8 8.7 47 394-440 61-111 (179)
129 cd03137 GATase1_AraC_1 AraC tr 93.3 0.14 3E-06 49.7 5.3 48 393-440 61-111 (187)
130 cd03148 GATase1_EcHsp31_like T 93.2 0.14 3.1E-06 52.6 5.5 46 394-439 94-143 (232)
131 cd03129 GAT1_Peptidase_E_like 93.0 0.54 1.2E-05 47.1 9.3 105 317-439 17-128 (210)
132 cd03140 GATase1_PfpI_3 Type 1 92.8 0.17 3.7E-06 48.8 5.2 46 395-440 59-106 (170)
133 cd03141 GATase1_Hsp31_like Typ 92.5 0.18 3.9E-06 51.2 5.1 47 394-440 88-138 (221)
134 cd03138 GATase1_AraC_2 AraC tr 92.4 0.23 5E-06 48.6 5.5 46 394-439 67-118 (195)
135 KOG1907 Phosphoribosylformylgl 92.0 2.5 5.4E-05 50.9 13.9 197 331-565 1058-1287(1320)
136 cd03135 GATase1_DJ-1 Type 1 gl 91.9 0.23 5E-06 46.7 4.8 46 395-440 59-108 (163)
137 PRK11574 oxidative-stress-resi 91.5 0.34 7.4E-06 47.7 5.6 45 395-439 65-113 (196)
138 COG3442 Predicted glutamine am 91.1 1.1 2.3E-05 46.1 8.6 46 395-440 51-102 (250)
139 cd03139 GATase1_PfpI_2 Type 1 90.5 0.35 7.5E-06 46.6 4.5 46 394-439 60-108 (183)
140 cd03136 GATase1_AraC_ArgR_like 89.9 0.48 1E-05 46.1 4.9 46 394-439 62-109 (185)
141 PF13278 DUF4066: Putative ami 89.5 0.45 9.7E-06 45.4 4.4 48 393-440 58-108 (166)
142 PRK11249 katE hydroperoxidase 89.0 1.4 2.9E-05 52.7 8.6 104 330-439 596-705 (752)
143 COG1897 MetA Homoserine trans- 86.2 5.8 0.00012 41.8 10.1 196 330-566 34-242 (307)
144 PRK09393 ftrA transcriptional 85.1 1.3 2.8E-05 47.1 5.1 47 393-439 72-120 (322)
145 PRK09435 membrane ATPase/prote 82.9 4.6 0.0001 43.9 8.3 59 35-100 55-127 (332)
146 cd02037 MRP-like MRP (Multiple 81.6 4.9 0.00011 38.5 7.1 78 152-252 53-130 (169)
147 PRK00090 bioD dithiobiotin syn 80.5 2.3 4.9E-05 42.6 4.6 159 39-253 2-172 (222)
148 PRK13768 GTPase; Provisional 80.4 7.2 0.00016 40.5 8.3 34 36-76 2-41 (253)
149 TIGR02069 cyanophycinase cyano 78.5 10 0.00022 39.6 8.7 108 317-439 16-130 (250)
150 PRK12374 putative dithiobiotin 75.7 3.4 7.4E-05 42.0 4.3 162 36-254 2-175 (231)
151 KOG2764 Putative transcription 75.6 4.5 9.9E-05 41.9 5.0 44 395-438 66-113 (247)
152 TIGR00750 lao LAO/AO transport 74.1 14 0.00031 39.2 8.6 39 35-80 33-77 (300)
153 cd03145 GAT1_cyanophycinase Ty 74.0 13 0.00029 37.6 8.0 108 317-439 17-131 (217)
154 PRK01911 ppnK inorganic polyph 70.8 9.5 0.00021 40.8 6.3 36 395-435 63-98 (292)
155 cd01830 XynE_like SGNH_hydrola 69.7 12 0.00027 36.7 6.5 87 126-220 21-131 (204)
156 PLN02929 NADH kinase 69.2 7.2 0.00016 42.0 5.0 66 343-435 32-97 (301)
157 PRK14974 cell division protein 68.9 59 0.0013 35.6 12.0 35 35-76 139-179 (336)
158 PRK10867 signal recognition pa 67.7 64 0.0014 36.5 12.3 65 171-250 181-247 (433)
159 PRK05632 phosphate acetyltrans 66.6 31 0.00068 41.1 10.1 31 36-72 2-38 (684)
160 PRK05866 short chain dehydroge 66.6 8.1 0.00018 40.4 4.7 53 13-71 15-70 (293)
161 PRK03372 ppnK inorganic polyph 66.0 14 0.0003 39.9 6.3 36 395-435 71-106 (306)
162 cd00550 ArsA_ATPase Oxyanion-t 65.9 14 0.0003 38.3 6.3 75 172-253 123-199 (254)
163 PRK06179 short chain dehydroge 65.2 7.4 0.00016 39.4 4.1 34 36-75 4-38 (270)
164 PRK05854 short chain dehydroge 64.9 8.8 0.00019 40.5 4.7 33 33-71 11-44 (313)
165 PF06283 ThuA: Trehalose utili 63.5 18 0.00039 36.2 6.4 43 392-434 48-90 (217)
166 PRK04539 ppnK inorganic polyph 62.9 23 0.0005 38.0 7.3 36 395-435 67-102 (296)
167 PRK07890 short chain dehydroge 62.9 8.9 0.00019 38.4 4.1 32 36-73 5-37 (258)
168 cd06300 PBP1_ABC_sugar_binding 62.8 45 0.00097 33.4 9.2 85 333-431 1-91 (272)
169 PRK02155 ppnK NAD(+)/NADH kina 62.8 17 0.00037 38.8 6.4 90 332-435 6-97 (291)
170 PRK06924 short chain dehydroge 62.4 8.9 0.00019 38.3 4.0 30 36-71 1-31 (251)
171 PRK02649 ppnK inorganic polyph 62.4 19 0.00041 38.8 6.6 36 395-435 67-102 (305)
172 PRK14077 pnk inorganic polypho 61.3 21 0.00046 38.1 6.7 85 332-435 11-98 (287)
173 PRK08177 short chain dehydroge 61.1 10 0.00022 37.5 4.0 33 36-74 1-34 (225)
174 TIGR01968 minD_bact septum sit 60.5 1E+02 0.0022 31.0 11.3 34 37-76 2-41 (261)
175 TIGR00064 ftsY signal recognit 60.3 1.4E+02 0.003 31.5 12.5 37 33-76 69-111 (272)
176 COG4285 Uncharacterized conser 60.3 34 0.00073 35.5 7.5 69 351-435 20-92 (253)
177 PF03575 Peptidase_S51: Peptid 59.1 9.8 0.00021 36.3 3.4 73 349-437 4-81 (154)
178 PRK08703 short chain dehydroge 59.1 12 0.00027 37.1 4.3 32 34-71 4-36 (239)
179 PRK06953 short chain dehydroge 58.8 11 0.00024 37.2 3.8 33 36-74 1-34 (222)
180 PRK12748 3-ketoacyl-(acyl-carr 58.5 12 0.00026 37.7 4.1 35 34-73 3-39 (256)
181 PRK04885 ppnK inorganic polyph 58.3 21 0.00045 37.7 6.0 35 396-435 35-71 (265)
182 PLN02727 NAD kinase 58.0 22 0.00049 43.6 6.8 36 395-435 742-777 (986)
183 PRK12742 oxidoreductase; Provi 57.9 13 0.00028 36.7 4.2 31 34-70 4-35 (237)
184 PRK06398 aldose dehydrogenase; 57.7 13 0.00027 37.8 4.2 32 34-71 4-36 (258)
185 PRK06194 hypothetical protein; 57.2 13 0.00028 38.0 4.2 32 34-71 4-36 (287)
186 cd01983 Fer4_NifH The Fer4_Nif 57.1 19 0.00042 29.6 4.6 27 39-72 2-34 (99)
187 PRK11889 flhF flagellar biosyn 56.9 1.2E+02 0.0026 34.4 11.8 139 36-251 241-385 (436)
188 COG0521 MoaB Molybdopterin bio 56.2 56 0.0012 32.5 8.1 74 123-207 27-115 (169)
189 PRK07666 fabG 3-ketoacyl-(acyl 55.6 15 0.00032 36.5 4.1 33 35-73 6-39 (239)
190 PRK03378 ppnK inorganic polyph 55.2 35 0.00075 36.5 7.1 36 395-435 62-97 (292)
191 PF10087 DUF2325: Uncharacteri 55.2 51 0.0011 29.0 7.1 87 333-438 1-89 (97)
192 PRK08267 short chain dehydroge 55.1 13 0.00028 37.4 3.8 30 36-71 1-31 (260)
193 cd03114 ArgK-like The function 54.9 44 0.00095 31.8 7.1 22 51-77 18-39 (148)
194 PRK07102 short chain dehydroge 54.6 13 0.00028 37.1 3.6 33 36-74 1-34 (243)
195 TIGR03371 cellulose_yhjQ cellu 54.4 47 0.001 33.3 7.6 35 36-76 1-41 (246)
196 COG0300 DltE Short-chain dehyd 54.4 15 0.00034 38.8 4.2 32 34-71 4-36 (265)
197 PRK06182 short chain dehydroge 54.3 15 0.00033 37.4 4.1 33 34-72 1-34 (273)
198 PRK12825 fabG 3-ketoacyl-(acyl 54.1 15 0.00033 36.0 4.0 31 34-70 4-35 (249)
199 PRK03708 ppnK inorganic polyph 53.5 26 0.00057 37.1 5.8 87 332-435 1-90 (277)
200 PRK14076 pnk inorganic polypho 53.4 36 0.00079 39.7 7.4 104 318-435 275-382 (569)
201 PRK06180 short chain dehydroge 53.1 15 0.00033 37.6 3.9 34 35-74 3-37 (277)
202 TIGR01969 minD_arch cell divis 53.0 35 0.00075 34.2 6.4 21 51-76 20-40 (251)
203 PRK09072 short chain dehydroge 52.9 16 0.00035 36.9 4.0 34 35-74 4-38 (263)
204 PRK06914 short chain dehydroge 52.3 16 0.00036 37.1 4.0 32 34-71 1-33 (280)
205 PRK07814 short chain dehydroge 52.3 18 0.00038 36.7 4.2 36 34-75 8-44 (263)
206 PLN00198 anthocyanidin reducta 52.1 16 0.00036 38.5 4.1 38 32-75 5-43 (338)
207 PRK06171 sorbitol-6-phosphate 51.9 20 0.00043 36.3 4.5 35 34-74 7-42 (266)
208 PRK12935 acetoacetyl-CoA reduc 51.8 16 0.00035 36.3 3.8 30 35-70 5-35 (247)
209 PRK14075 pnk inorganic polypho 51.8 39 0.00085 35.4 6.7 72 332-435 1-72 (256)
210 PRK08278 short chain dehydroge 51.2 18 0.00039 37.1 4.1 31 35-71 5-36 (273)
211 PRK05693 short chain dehydroge 50.7 17 0.00036 37.1 3.7 31 36-72 1-32 (274)
212 PRK07035 short chain dehydroge 50.7 19 0.0004 36.0 4.0 31 35-71 7-38 (252)
213 PRK05876 short chain dehydroge 50.4 18 0.00039 37.4 4.0 32 34-71 4-36 (275)
214 COG0540 PyrB Aspartate carbamo 50.4 41 0.00089 36.5 6.6 104 226-363 86-189 (316)
215 PRK09135 pteridine reductase; 50.3 20 0.00043 35.4 4.1 31 35-71 5-36 (249)
216 PRK09730 putative NAD(P)-bindi 50.0 18 0.0004 35.7 3.8 29 36-70 1-30 (247)
217 PRK06947 glucose-1-dehydrogena 49.8 19 0.00042 35.7 4.0 29 36-70 2-31 (248)
218 PRK12829 short chain dehydroge 49.7 21 0.00045 35.8 4.2 35 34-74 9-44 (264)
219 cd01391 Periplasmic_Binding_Pr 49.5 59 0.0013 31.1 7.2 32 395-431 57-88 (269)
220 PRK12745 3-ketoacyl-(acyl-carr 49.4 19 0.00042 35.9 3.9 30 36-71 2-32 (256)
221 TIGR03325 BphB_TodD cis-2,3-di 49.2 21 0.00045 36.2 4.1 31 35-71 4-35 (262)
222 PRK05993 short chain dehydroge 49.0 19 0.0004 37.0 3.8 33 36-74 4-37 (277)
223 PRK12828 short chain dehydroge 48.9 23 0.0005 34.6 4.3 34 36-75 7-41 (239)
224 KOG2708 Predicted metalloprote 48.9 54 0.0012 34.4 6.9 50 395-448 69-122 (336)
225 TIGR01832 kduD 2-deoxy-D-gluco 48.9 21 0.00046 35.5 4.1 32 34-71 3-35 (248)
226 PRK06101 short chain dehydroge 48.6 18 0.00039 36.1 3.6 32 36-73 1-33 (240)
227 PRK07577 short chain dehydroge 48.4 24 0.00052 34.7 4.4 35 35-75 2-37 (234)
228 PRK12481 2-deoxy-D-gluconate 3 48.4 21 0.00046 36.0 4.0 32 34-71 6-38 (251)
229 PRK08017 oxidoreductase; Provi 48.0 21 0.00045 35.6 3.9 32 36-73 2-34 (256)
230 PRK12827 short chain dehydroge 47.6 22 0.00048 35.0 4.0 31 36-72 6-37 (249)
231 PRK12826 3-ketoacyl-(acyl-carr 47.3 23 0.00051 34.9 4.1 35 35-75 5-40 (251)
232 PRK07825 short chain dehydroge 47.2 22 0.00048 36.1 4.0 33 34-72 3-36 (273)
233 PRK08339 short chain dehydroge 47.0 23 0.0005 36.2 4.1 32 34-71 6-38 (263)
234 PRK06463 fabG 3-ketoacyl-(acyl 46.8 23 0.00051 35.5 4.0 29 36-70 7-36 (255)
235 PRK05565 fabG 3-ketoacyl-(acyl 46.3 25 0.00054 34.7 4.1 32 34-71 3-35 (247)
236 COG4126 Hydantoin racemase [Am 46.2 23 0.00049 36.7 3.7 45 395-446 68-112 (230)
237 PRK07454 short chain dehydroge 46.1 22 0.00049 35.2 3.8 33 35-73 5-38 (241)
238 cd06312 PBP1_ABC_sugar_binding 46.0 94 0.002 31.2 8.3 34 395-432 56-89 (271)
239 PRK12823 benD 1,6-dihydroxycyc 46.0 26 0.00057 35.2 4.3 32 34-71 6-38 (260)
240 PRK08993 2-deoxy-D-gluconate 3 45.8 25 0.00054 35.4 4.1 32 34-71 8-40 (253)
241 PHA02518 ParA-like protein; Pr 45.7 50 0.0011 32.1 6.1 22 51-77 20-41 (211)
242 PRK01231 ppnK inorganic polyph 45.5 53 0.0011 35.2 6.6 36 395-435 61-96 (295)
243 cd06267 PBP1_LacI_sugar_bindin 45.4 87 0.0019 30.5 7.8 31 395-431 54-84 (264)
244 PRK06128 oxidoreductase; Provi 45.4 31 0.00068 35.9 4.9 31 35-71 54-85 (300)
245 PRK07453 protochlorophyllide o 45.2 25 0.00053 37.0 4.1 31 35-71 5-36 (322)
246 PRK09242 tropinone reductase; 45.1 25 0.00055 35.3 4.0 31 35-71 8-39 (257)
247 PRK08226 short chain dehydroge 45.0 26 0.00057 35.2 4.1 31 35-71 5-36 (263)
248 cd01836 FeeA_FeeB_like SGNH_hy 44.9 45 0.00097 32.0 5.5 59 153-218 54-116 (191)
249 PRK08263 short chain dehydroge 44.8 25 0.00055 35.9 4.0 33 34-72 1-34 (275)
250 PRK06197 short chain dehydroge 44.6 27 0.00058 36.4 4.2 32 34-71 14-46 (306)
251 PRK09186 flagellin modificatio 44.1 28 0.0006 34.8 4.1 31 35-71 3-34 (256)
252 PRK05653 fabG 3-ketoacyl-(acyl 44.0 29 0.00062 34.0 4.1 35 35-75 4-39 (246)
253 PRK07024 short chain dehydroge 43.7 25 0.00053 35.5 3.7 32 36-73 2-34 (257)
254 PRK05786 fabG 3-ketoacyl-(acyl 43.5 29 0.00063 34.2 4.1 30 35-70 4-34 (238)
255 PRK08219 short chain dehydroge 43.3 24 0.00051 34.4 3.4 32 35-73 2-34 (227)
256 PRK06200 2,3-dihydroxy-2,3-dih 43.3 28 0.0006 35.2 4.0 32 35-72 5-37 (263)
257 PF13500 AAA_26: AAA domain; P 43.2 27 0.00058 34.3 3.8 156 38-252 2-167 (199)
258 PRK05867 short chain dehydroge 43.2 30 0.00065 34.7 4.2 32 34-71 7-39 (253)
259 PLN02935 Bifunctional NADH kin 43.1 50 0.0011 38.1 6.3 36 395-435 261-296 (508)
260 PRK00561 ppnK inorganic polyph 43.0 21 0.00045 37.7 3.1 36 395-435 32-67 (259)
261 PRK06196 oxidoreductase; Provi 43.0 26 0.00055 36.9 3.8 33 34-72 24-57 (315)
262 PRK06550 fabG 3-ketoacyl-(acyl 43.0 33 0.00071 33.8 4.4 33 35-73 4-37 (235)
263 TIGR00959 ffh signal recogniti 42.9 1.5E+02 0.0032 33.6 9.9 66 171-251 180-247 (428)
264 KOG3974 Predicted sugar kinase 42.8 87 0.0019 33.5 7.4 39 391-429 96-136 (306)
265 PRK07326 short chain dehydroge 42.8 30 0.00065 34.0 4.1 33 36-74 6-39 (237)
266 TIGR01425 SRP54_euk signal rec 42.8 2.9E+02 0.0062 31.4 12.1 36 35-77 99-140 (429)
267 PRK08303 short chain dehydroge 42.7 28 0.00061 36.8 4.1 31 35-71 7-38 (305)
268 PRK08643 acetoin reductase; Va 42.7 29 0.00062 34.8 4.0 30 36-71 2-32 (256)
269 PRK12937 short chain dehydroge 42.7 26 0.00057 34.6 3.6 29 36-70 5-34 (245)
270 cd06320 PBP1_allose_binding Pe 42.6 1.3E+02 0.0028 30.2 8.7 33 395-431 56-88 (275)
271 COG4090 Uncharacterized protei 42.5 31 0.00067 33.1 3.8 41 393-433 82-124 (154)
272 PRK07201 short chain dehydroge 42.5 24 0.00053 40.8 3.8 33 33-71 368-401 (657)
273 PRK08213 gluconate 5-dehydroge 42.4 30 0.00066 34.8 4.1 33 33-71 9-42 (259)
274 PRK07062 short chain dehydroge 42.3 31 0.00066 34.8 4.1 35 34-74 6-41 (265)
275 PRK04761 ppnK inorganic polyph 42.2 22 0.00047 37.3 3.0 37 394-435 23-59 (246)
276 PRK08416 7-alpha-hydroxysteroi 42.1 30 0.00066 35.0 4.0 31 34-70 6-37 (260)
277 PRK06523 short chain dehydroge 42.0 33 0.00072 34.4 4.3 34 35-74 8-42 (260)
278 TIGR03499 FlhF flagellar biosy 41.7 36 0.00078 35.9 4.6 35 36-77 194-236 (282)
279 PRK13849 putative crown gall t 41.6 1.3E+02 0.0029 30.8 8.6 24 51-79 21-44 (231)
280 PF13472 Lipase_GDSL_2: GDSL-l 41.6 26 0.00057 31.9 3.2 91 121-222 12-115 (179)
281 PRK06483 dihydromonapterin red 41.5 32 0.0007 34.0 4.1 30 36-71 2-32 (236)
282 PRK06940 short chain dehydroge 41.5 25 0.00055 36.2 3.4 28 36-71 2-30 (275)
283 TIGR01012 Sa_S2_E_A ribosomal 41.2 1.5E+02 0.0033 30.1 8.8 77 332-432 62-138 (196)
284 COG3155 ElbB Uncharacterized p 41.2 40 0.00088 33.5 4.4 49 395-443 84-146 (217)
285 PRK08063 enoyl-(acyl carrier p 41.0 34 0.00073 34.0 4.1 31 34-70 2-33 (250)
286 PRK09291 short chain dehydroge 41.0 31 0.00067 34.5 3.8 30 36-71 2-32 (257)
287 PRK07063 short chain dehydroge 40.9 34 0.00074 34.4 4.2 31 35-71 6-37 (260)
288 PRK07677 short chain dehydroge 40.9 30 0.00064 34.8 3.7 30 37-72 2-32 (252)
289 PRK08589 short chain dehydroge 40.8 34 0.00073 35.0 4.2 32 34-71 4-36 (272)
290 cd05014 SIS_Kpsf KpsF-like pro 40.7 1.2E+02 0.0026 27.2 7.4 40 394-435 45-84 (128)
291 PRK12743 oxidoreductase; Provi 40.4 32 0.00069 34.7 3.9 29 36-70 2-31 (256)
292 PRK07478 short chain dehydroge 40.4 35 0.00076 34.2 4.2 30 36-71 6-36 (254)
293 PF01513 NAD_kinase: ATP-NAD k 40.2 25 0.00055 37.1 3.2 37 394-435 74-110 (285)
294 PF08497 Radical_SAM_N: Radica 40.1 30 0.00065 37.2 3.7 11 555-565 281-291 (302)
295 PRK07023 short chain dehydroge 40.0 35 0.00076 33.9 4.1 29 37-71 2-31 (243)
296 PRK08265 short chain dehydroge 39.9 36 0.00077 34.6 4.2 31 35-71 5-36 (261)
297 PRK12744 short chain dehydroge 39.9 34 0.00074 34.4 4.0 30 36-71 8-38 (257)
298 PRK08936 glucose-1-dehydrogena 39.8 36 0.00079 34.3 4.2 34 32-71 3-37 (261)
299 PRK06124 gluconate 5-dehydroge 39.7 36 0.00079 34.1 4.1 34 35-74 10-44 (256)
300 PRK06125 short chain dehydroge 39.6 36 0.00078 34.3 4.1 33 35-73 6-39 (259)
301 PRK09271 flavodoxin; Provision 39.5 1.3E+02 0.0029 28.7 7.9 42 393-434 48-94 (160)
302 PRK12384 sorbitol-6-phosphate 39.3 34 0.00073 34.4 3.8 30 36-71 2-32 (259)
303 PRK06935 2-deoxy-D-gluconate 3 39.2 37 0.0008 34.2 4.1 31 35-71 14-45 (258)
304 COG3340 PepE Peptidase E [Amin 39.2 1.4E+02 0.003 31.1 8.1 92 331-439 32-132 (224)
305 PRK07985 oxidoreductase; Provi 38.9 36 0.00079 35.5 4.1 30 36-71 49-79 (294)
306 PRK07806 short chain dehydroge 38.9 40 0.00086 33.5 4.3 31 34-70 4-35 (248)
307 PRK06057 short chain dehydroge 38.8 39 0.00084 34.0 4.2 32 34-71 5-37 (255)
308 KOG1610 Corticosteroid 11-beta 38.8 31 0.00067 37.5 3.6 33 32-70 25-58 (322)
309 PRK07576 short chain dehydroge 38.7 37 0.0008 34.6 4.1 35 35-75 8-43 (264)
310 PRK12747 short chain dehydroge 38.6 36 0.00078 34.1 3.9 29 36-70 4-33 (252)
311 COG0061 nadF NAD kinase [Coenz 38.4 64 0.0014 34.2 5.9 35 395-434 54-88 (281)
312 PRK07856 short chain dehydroge 38.4 40 0.00087 33.8 4.2 34 35-74 5-39 (252)
313 PRK05717 oxidoreductase; Valid 38.3 38 0.00083 34.0 4.1 31 35-71 9-40 (255)
314 PRK06482 short chain dehydroge 38.2 34 0.00074 34.8 3.7 31 36-72 2-33 (276)
315 PRK06720 hypothetical protein; 38.0 40 0.00086 32.8 4.0 31 35-71 15-46 (169)
316 PRK07067 sorbitol dehydrogenas 37.9 39 0.00085 33.9 4.1 30 36-71 6-36 (257)
317 PRK06505 enoyl-(acyl carrier p 37.9 39 0.00084 34.9 4.1 32 35-71 6-39 (271)
318 PRK12859 3-ketoacyl-(acyl-carr 37.9 39 0.00085 34.1 4.1 32 35-71 5-38 (256)
319 PRK12938 acetyacetyl-CoA reduc 37.8 37 0.00081 33.7 3.9 30 35-70 2-32 (246)
320 PRK07109 short chain dehydroge 37.8 37 0.00079 36.4 4.0 33 33-71 5-38 (334)
321 cd05013 SIS_RpiR RpiR-like pro 37.7 2.9E+02 0.0063 24.4 10.6 38 394-433 58-95 (139)
322 PRK08690 enoyl-(acyl carrier p 37.6 39 0.00083 34.5 4.0 31 35-70 5-37 (261)
323 TIGR02632 RhaD_aldol-ADH rhamn 37.6 35 0.00075 40.6 4.1 35 33-73 411-446 (676)
324 PRK05557 fabG 3-ketoacyl-(acyl 37.5 41 0.00089 33.0 4.1 31 35-71 4-35 (248)
325 PRK09221 beta alanine--pyruvat 37.5 1.2E+02 0.0025 34.3 8.1 33 173-205 218-252 (445)
326 PRK12939 short chain dehydroge 37.4 43 0.00092 33.1 4.2 31 35-71 6-37 (250)
327 PF14403 CP_ATPgrasp_2: Circul 37.4 1.8E+02 0.0039 33.2 9.5 133 239-406 98-236 (445)
328 PRK08945 putative oxoacyl-(acy 37.4 38 0.00082 33.8 3.8 35 34-74 10-45 (247)
329 cd06301 PBP1_rhizopine_binding 37.3 1.6E+02 0.0034 29.4 8.3 33 395-431 55-87 (272)
330 PRK06113 7-alpha-hydroxysteroi 37.2 42 0.00091 33.7 4.1 31 34-70 9-40 (255)
331 PRK06500 short chain dehydroge 37.2 43 0.00093 33.1 4.2 31 35-71 5-36 (249)
332 PRK08309 short chain dehydroge 37.2 36 0.00078 33.5 3.5 26 39-71 3-29 (177)
333 PRK06172 short chain dehydroge 37.1 40 0.00086 33.7 4.0 31 36-72 7-38 (253)
334 PRK08415 enoyl-(acyl carrier p 37.0 41 0.00088 34.9 4.1 32 35-71 4-37 (274)
335 COG0771 MurD UDP-N-acetylmuram 37.0 1.4E+02 0.0031 34.1 8.6 83 331-430 7-98 (448)
336 PRK08217 fabG 3-ketoacyl-(acyl 37.0 42 0.00091 33.1 4.1 30 36-71 5-35 (253)
337 PRK07097 gluconate 5-dehydroge 36.8 42 0.00091 34.0 4.1 33 33-71 7-40 (265)
338 PLN02253 xanthoxin dehydrogena 36.7 44 0.00095 34.1 4.3 31 35-71 17-48 (280)
339 PRK06114 short chain dehydroge 36.7 42 0.00091 33.7 4.1 32 34-71 6-38 (254)
340 COG0052 RpsB Ribosomal protein 36.5 1.9E+02 0.0042 30.6 8.8 30 397-432 157-186 (252)
341 PRK08085 gluconate 5-dehydroge 36.4 44 0.00095 33.5 4.1 32 34-71 7-39 (254)
342 cd01538 PBP1_ABC_xylose_bindin 36.4 1.6E+02 0.0035 30.0 8.4 33 395-431 54-86 (288)
343 COG0132 BioD Dethiobiotin synt 36.3 42 0.00091 34.7 4.0 174 35-264 1-186 (223)
344 cd06321 PBP1_ABC_sugar_binding 36.3 1.8E+02 0.0038 29.1 8.5 33 395-431 56-88 (271)
345 PRK03501 ppnK inorganic polyph 36.1 82 0.0018 33.3 6.2 34 396-434 39-74 (264)
346 cd03115 SRP The signal recogni 36.0 3.8E+02 0.0083 25.3 10.9 37 171-209 80-116 (173)
347 PRK10818 cell division inhibit 36.0 2.3E+02 0.005 29.0 9.4 35 36-76 2-42 (270)
348 cd04728 ThiG Thiazole synthase 35.8 1.3E+02 0.0029 31.7 7.5 71 338-423 17-87 (248)
349 PRK08277 D-mannonate oxidoredu 35.8 43 0.00094 34.1 4.0 31 35-71 9-40 (278)
350 PRK06079 enoyl-(acyl carrier p 35.8 45 0.00098 33.7 4.1 32 35-71 6-39 (252)
351 KOG4180 Predicted kinase [Gene 35.8 37 0.0008 37.1 3.5 62 344-431 74-135 (395)
352 PF13407 Peripla_BP_4: Peripla 35.7 1.6E+02 0.0034 29.3 8.0 83 334-431 1-86 (257)
353 PRK08264 short chain dehydroge 35.7 43 0.00094 33.0 3.9 34 35-74 5-40 (238)
354 PRK12824 acetoacetyl-CoA reduc 35.6 47 0.001 32.7 4.1 34 36-75 2-36 (245)
355 PRK07831 short chain dehydroge 35.6 47 0.001 33.5 4.2 32 35-71 16-48 (262)
356 PRK06701 short chain dehydroge 35.5 44 0.00095 34.8 4.1 30 36-71 46-76 (290)
357 PRK08340 glucose-1-dehydrogena 35.3 36 0.00077 34.4 3.3 28 38-71 2-30 (259)
358 PRK12746 short chain dehydroge 35.2 47 0.001 33.1 4.1 29 36-70 6-35 (254)
359 PRK06841 short chain dehydroge 35.0 52 0.0011 32.8 4.4 35 34-74 13-48 (255)
360 PRK12429 3-hydroxybutyrate deh 34.9 47 0.001 33.0 4.1 31 35-71 3-34 (258)
361 PRK14493 putative bifunctional 34.8 50 0.0011 35.0 4.4 40 36-84 1-48 (274)
362 PRK04690 murD UDP-N-acetylmura 34.6 1.1E+02 0.0024 34.6 7.4 83 332-430 9-98 (468)
363 PRK06123 short chain dehydroge 34.6 45 0.00097 33.1 3.8 29 36-70 2-31 (248)
364 PRK04148 hypothetical protein; 34.5 55 0.0012 31.3 4.1 85 51-185 30-114 (134)
365 cd06305 PBP1_methylthioribose_ 34.5 2E+02 0.0043 28.6 8.5 33 395-431 54-86 (273)
366 PRK08642 fabG 3-ketoacyl-(acyl 34.3 44 0.00095 33.2 3.7 29 36-70 5-34 (253)
367 cd02035 ArsA ArsA ATPase funct 34.3 1.5E+02 0.0032 29.7 7.6 30 223-252 150-179 (217)
368 COG1214 Inactive homolog of me 34.3 47 0.001 34.0 4.0 40 394-433 56-97 (220)
369 PLN02780 ketoreductase/ oxidor 34.3 36 0.00079 36.3 3.3 32 36-73 53-85 (320)
370 PRK08628 short chain dehydroge 34.2 50 0.0011 33.1 4.2 32 34-71 5-37 (258)
371 PRK08220 2,3-dihydroxybenzoate 34.2 48 0.001 32.9 4.0 34 35-74 7-41 (252)
372 PRK07370 enoyl-(acyl carrier p 34.0 51 0.0011 33.5 4.2 32 35-71 5-38 (258)
373 cd01826 acyloxyacyl_hydrolase_ 34.0 1E+02 0.0022 33.5 6.5 73 123-207 75-169 (305)
374 CHL00162 thiG thiamin biosynth 33.9 1.5E+02 0.0034 31.5 7.6 73 338-424 24-96 (267)
375 PRK06997 enoyl-(acyl carrier p 33.9 51 0.0011 33.7 4.2 31 35-70 5-37 (260)
376 cd01451 vWA_Magnesium_chelatas 33.7 80 0.0017 30.4 5.3 60 398-457 101-172 (178)
377 cd01537 PBP1_Repressors_Sugar_ 33.5 2.1E+02 0.0046 27.7 8.4 32 395-431 54-85 (264)
378 PLN02686 cinnamoyl-CoA reducta 33.5 45 0.00097 36.2 3.9 34 32-71 49-83 (367)
379 PRK08862 short chain dehydroge 33.4 53 0.0012 33.0 4.2 31 35-71 4-35 (227)
380 PRK00208 thiG thiazole synthas 33.4 1.6E+02 0.0034 31.2 7.6 70 338-423 18-87 (250)
381 PRK00421 murC UDP-N-acetylmura 33.3 1.2E+02 0.0026 33.9 7.4 82 327-430 3-95 (461)
382 PRK06077 fabG 3-ketoacyl-(acyl 33.2 54 0.0012 32.5 4.2 30 35-70 5-35 (252)
383 PRK08594 enoyl-(acyl carrier p 33.0 54 0.0012 33.4 4.2 32 35-71 6-39 (257)
384 TIGR01963 PHB_DH 3-hydroxybuty 32.9 49 0.0011 32.8 3.8 29 37-71 2-31 (255)
385 PRK07523 gluconate 5-dehydroge 32.8 53 0.0011 32.9 4.0 30 35-70 9-39 (255)
386 PRK06139 short chain dehydroge 32.7 48 0.001 35.6 3.9 31 35-71 6-37 (330)
387 PRK12367 short chain dehydroge 32.7 47 0.001 34.0 3.7 34 35-74 13-47 (245)
388 PRK07775 short chain dehydroge 32.6 51 0.0011 33.7 4.0 32 34-71 8-40 (274)
389 PRK06603 enoyl-(acyl carrier p 32.5 53 0.0011 33.5 4.0 31 35-70 7-39 (260)
390 PRK01581 speE spermidine synth 32.4 4.2E+02 0.0092 29.7 11.1 91 138-247 202-294 (374)
391 PRK13394 3-hydroxybutyrate deh 32.3 56 0.0012 32.6 4.1 34 34-73 5-39 (262)
392 cd06309 PBP1_YtfQ_like Peripla 32.3 1.8E+02 0.0038 29.2 7.8 33 395-431 54-86 (273)
393 COG4977 Transcriptional regula 32.2 60 0.0013 35.5 4.5 102 332-439 13-122 (328)
394 cd03794 GT1_wbuB_like This fam 32.1 5.4E+02 0.012 25.9 17.1 41 391-431 289-329 (394)
395 PRK06138 short chain dehydroge 32.1 57 0.0012 32.3 4.1 31 35-71 4-35 (252)
396 TIGR01289 LPOR light-dependent 32.1 50 0.0011 34.9 3.9 29 36-70 3-33 (314)
397 PLN02422 dephospho-CoA kinase 31.4 47 0.001 34.4 3.4 28 36-68 1-28 (232)
398 PRK02231 ppnK inorganic polyph 31.3 46 0.001 35.3 3.4 36 395-435 41-76 (272)
399 PRK09134 short chain dehydroge 31.3 50 0.0011 33.2 3.6 29 36-70 9-38 (258)
400 PRK01368 murD UDP-N-acetylmura 31.3 1.4E+02 0.0031 33.7 7.5 84 331-430 6-92 (454)
401 PRK05875 short chain dehydroge 30.9 60 0.0013 32.9 4.2 33 34-72 5-38 (276)
402 PRK07074 short chain dehydroge 30.9 57 0.0012 32.6 3.9 31 36-72 2-33 (257)
403 PRK05872 short chain dehydroge 30.5 58 0.0012 33.9 4.0 31 35-71 8-39 (296)
404 PRK07832 short chain dehydroge 30.4 52 0.0011 33.5 3.6 29 37-71 1-30 (272)
405 PRK08251 short chain dehydroge 30.3 58 0.0013 32.3 3.8 30 36-71 2-32 (248)
406 cd01575 PBP1_GntR Ligand-bindi 30.3 2.9E+02 0.0064 27.2 8.9 31 395-431 54-84 (268)
407 PRK04020 rps2P 30S ribosomal p 30.2 2E+02 0.0044 29.4 7.6 77 332-432 68-144 (204)
408 PF00106 adh_short: short chai 30.1 62 0.0013 29.9 3.8 21 37-58 1-22 (167)
409 cd01832 SGNH_hydrolase_like_1 29.9 1E+02 0.0022 29.2 5.3 46 172-219 66-116 (185)
410 PF04016 DUF364: Domain of unk 29.8 54 0.0012 31.5 3.3 61 329-405 9-71 (147)
411 cd01425 RPS2 Ribosomal protein 29.7 3.5E+02 0.0075 27.0 9.2 32 395-432 126-157 (193)
412 smart00852 MoCF_biosynth Proba 29.4 63 0.0014 29.9 3.6 69 348-429 21-90 (135)
413 cd06299 PBP1_LacI_like_13 Liga 29.3 2.5E+02 0.0053 27.8 8.2 29 395-429 54-82 (265)
414 PRK08159 enoyl-(acyl carrier p 29.3 64 0.0014 33.3 4.1 32 35-71 9-42 (272)
415 COG0521 MoaB Molybdopterin bio 29.1 36 0.00079 33.8 2.1 31 397-427 68-98 (169)
416 PRK09417 mogA molybdenum cofac 29.1 1.2E+02 0.0026 30.6 5.8 70 124-203 24-109 (193)
417 TIGR02482 PFKA_ATP 6-phosphofr 29.0 76 0.0017 34.2 4.6 62 384-450 77-153 (301)
418 COG1339 Transcriptional regula 29.0 33 0.00072 35.0 1.8 12 39-50 87-98 (214)
419 cd06318 PBP1_ABC_sugar_binding 28.9 2.6E+02 0.0056 28.0 8.3 31 395-429 54-84 (282)
420 PRK05884 short chain dehydroge 28.8 58 0.0013 32.4 3.5 27 39-71 3-30 (223)
421 cd06316 PBP1_ABC_sugar_binding 28.8 2.7E+02 0.0058 28.4 8.6 33 395-431 55-87 (294)
422 PLN02989 cinnamyl-alcohol dehy 28.8 62 0.0013 33.8 3.9 34 36-75 5-39 (325)
423 TIGR01829 AcAcCoA_reduct aceto 28.6 62 0.0014 31.8 3.7 29 37-71 1-30 (242)
424 PRK05579 bifunctional phosphop 28.3 66 0.0014 36.0 4.2 35 33-72 185-235 (399)
425 TIGR03206 benzo_BadH 2-hydroxy 28.2 71 0.0015 31.6 4.0 30 36-71 3-33 (250)
426 TIGR02667 moaB_proteo molybden 28.1 3.5E+02 0.0075 26.3 8.7 33 395-427 62-94 (163)
427 cd06274 PBP1_FruR Ligand bindi 27.9 2.8E+02 0.006 27.6 8.3 31 395-431 54-84 (264)
428 PLN02896 cinnamyl-alcohol dehy 27.8 69 0.0015 34.1 4.1 29 37-71 11-40 (353)
429 cd06282 PBP1_GntR_like_2 Ligan 27.7 3.4E+02 0.0073 26.7 8.8 33 395-432 54-86 (266)
430 PRK06198 short chain dehydroge 27.7 70 0.0015 32.0 3.9 32 34-71 4-37 (260)
431 TIGR00073 hypB hydrogenase acc 27.7 1.2E+02 0.0026 30.1 5.5 69 24-100 12-83 (207)
432 PRK14494 putative molybdopteri 27.6 70 0.0015 33.2 3.9 30 36-72 1-36 (229)
433 PRK01710 murD UDP-N-acetylmura 27.5 1.9E+02 0.0041 32.5 7.6 78 333-430 16-106 (458)
434 KOG2666 UDP-glucose/GDP-mannos 27.4 3.2E+02 0.0069 30.3 8.8 103 311-428 99-201 (481)
435 smart00864 Tubulin Tubulin/Fts 27.2 91 0.002 30.8 4.6 103 137-258 54-158 (192)
436 PRK06181 short chain dehydroge 27.2 67 0.0014 32.3 3.7 30 37-72 2-32 (263)
437 PRK07791 short chain dehydroge 27.2 74 0.0016 33.0 4.1 31 35-71 5-36 (286)
438 TIGR01305 GMP_reduct_1 guanosi 27.1 2.4E+02 0.0052 31.2 8.0 51 395-445 170-236 (343)
439 TIGR01831 fabG_rel 3-oxoacyl-( 27.0 53 0.0012 32.4 2.9 26 39-70 1-27 (239)
440 PRK09701 D-allose transporter 27.0 3.6E+02 0.0078 28.1 9.2 86 332-431 25-113 (311)
441 PTZ00254 40S ribosomal protein 26.9 3.3E+02 0.0072 28.8 8.7 76 333-432 73-148 (249)
442 TIGR03815 CpaE_hom_Actino heli 26.9 3.8E+02 0.0083 28.5 9.5 39 34-78 91-135 (322)
443 PF04392 ABC_sub_bind: ABC tra 26.8 1.2E+02 0.0025 31.8 5.5 36 394-432 182-218 (294)
444 PF10113 Fibrillarin_2: Fibril 26.8 2.2E+02 0.0047 32.4 7.6 94 97-214 118-228 (505)
445 cd05005 SIS_PHI Hexulose-6-pho 26.7 5.8E+02 0.013 24.6 10.0 89 314-433 19-110 (179)
446 PRK10653 D-ribose transporter 26.6 4.1E+02 0.0089 27.2 9.5 85 331-431 26-113 (295)
447 cd06302 PBP1_LsrB_Quorum_Sensi 26.4 3.6E+02 0.0077 27.8 9.0 33 395-431 55-87 (298)
448 cd02042 ParA ParA and ParB of 26.4 1.1E+02 0.0023 26.5 4.4 21 51-76 19-39 (104)
449 PRK07533 enoyl-(acyl carrier p 26.3 83 0.0018 31.9 4.2 32 35-71 9-42 (258)
450 PRK12936 3-ketoacyl-(acyl-carr 26.3 85 0.0018 30.9 4.2 31 34-70 4-35 (245)
451 PRK10355 xylF D-xylose transpo 26.3 4.6E+02 0.0099 27.9 10.0 86 330-431 24-112 (330)
452 PRK06484 short chain dehydroge 26.2 63 0.0014 36.4 3.6 30 36-71 269-299 (520)
453 PRK07069 short chain dehydroge 26.2 67 0.0015 31.8 3.5 27 39-71 2-29 (251)
454 COG4242 CphB Cyanophycinase an 26.2 1.3E+02 0.0029 31.9 5.6 77 351-439 73-154 (293)
455 PRK07231 fabG 3-ketoacyl-(acyl 26.0 85 0.0018 31.0 4.1 34 36-75 5-39 (251)
456 cd06319 PBP1_ABC_sugar_binding 25.9 3.8E+02 0.0082 26.7 8.9 33 395-431 54-86 (277)
457 PRK03369 murD UDP-N-acetylmura 25.9 2.3E+02 0.0049 32.3 8.0 82 332-430 13-99 (488)
458 PF03437 BtpA: BtpA family; I 25.7 3.4E+02 0.0073 28.8 8.6 79 348-435 128-209 (254)
459 cd01536 PBP1_ABC_sugar_binding 25.7 4.1E+02 0.0089 25.9 9.0 72 346-431 13-86 (267)
460 PRK06949 short chain dehydroge 25.6 83 0.0018 31.3 4.0 32 34-71 7-39 (258)
461 PF00202 Aminotran_3: Aminotra 25.5 2.3E+02 0.0051 30.5 7.7 66 173-250 177-244 (339)
462 PF09822 ABC_transp_aux: ABC-t 25.5 7.6E+02 0.016 25.5 12.5 73 331-427 146-227 (271)
463 PRK05650 short chain dehydroge 25.4 74 0.0016 32.3 3.7 28 38-71 2-30 (270)
464 PRK05855 short chain dehydroge 25.4 74 0.0016 35.8 4.0 31 35-71 314-345 (582)
465 cd01539 PBP1_GGBP Periplasmic 25.3 3.8E+02 0.0082 27.7 9.0 33 395-431 56-88 (303)
466 COG1879 RbsB ABC-type sugar tr 25.3 4.2E+02 0.0091 27.7 9.4 88 332-433 34-124 (322)
467 PRK07889 enoyl-(acyl carrier p 25.2 90 0.0019 31.7 4.2 31 36-71 7-39 (256)
468 COG2022 ThiG Uncharacterized e 25.2 2.7E+02 0.0059 29.4 7.5 71 338-423 24-94 (262)
469 cd04731 HisF The cyclase subun 25.2 7.3E+02 0.016 25.1 11.0 85 154-264 28-113 (243)
470 PRK11557 putative DNA-binding 25.1 7.7E+02 0.017 25.4 11.4 41 392-434 171-211 (278)
471 PRK07060 short chain dehydroge 25.1 87 0.0019 30.9 4.0 33 34-72 7-40 (245)
472 PRK00081 coaE dephospho-CoA ki 25.1 78 0.0017 31.3 3.6 28 36-68 2-29 (194)
473 cd06311 PBP1_ABC_sugar_binding 25.1 3.9E+02 0.0085 26.7 8.8 33 395-431 59-91 (274)
474 COG2870 RfaE ADP-heptose synth 24.9 3.3E+02 0.0072 31.0 8.6 38 391-429 138-175 (467)
475 cd01840 SGNH_hydrolase_yrhL_li 24.9 2E+02 0.0044 26.8 6.3 45 152-206 34-78 (150)
476 cd06306 PBP1_TorT-like TorT-li 24.7 4E+02 0.0087 26.7 8.9 32 395-431 56-87 (268)
477 PRK14132 riboflavin kinase; Pr 24.6 34 0.00073 32.5 0.9 10 41-50 3-12 (126)
478 PRK09913 putative fructose-lik 24.4 31 0.00068 32.3 0.6 51 103-154 13-68 (148)
479 TIGR02637 RhaS rhamnose ABC tr 24.3 3.5E+02 0.0077 27.7 8.5 34 395-432 55-88 (302)
480 cd06323 PBP1_ribose_binding Pe 24.2 3.8E+02 0.0083 26.3 8.5 33 395-431 54-86 (268)
481 PRK06300 enoyl-(acyl carrier p 24.1 92 0.002 33.2 4.2 31 35-70 7-39 (299)
482 PRK07792 fabG 3-ketoacyl-(acyl 24.1 91 0.002 32.7 4.1 30 35-70 11-41 (306)
483 PRK03333 coaE dephospho-CoA ki 24.1 72 0.0016 35.5 3.5 28 36-68 1-28 (395)
484 CHL00175 minD septum-site dete 24.0 1.1E+02 0.0023 31.8 4.5 44 32-81 11-61 (281)
485 TIGR02415 23BDH acetoin reduct 24.0 83 0.0018 31.3 3.7 30 37-72 1-31 (254)
486 PRK07904 short chain dehydroge 24.0 85 0.0018 31.9 3.8 32 35-72 7-40 (253)
487 PLN02884 6-phosphofructokinase 24.0 1E+02 0.0022 34.8 4.6 61 386-448 131-208 (411)
488 cd00885 cinA Competence-damage 23.8 1.4E+02 0.003 29.3 5.1 76 349-439 23-99 (170)
489 PLN02730 enoyl-[acyl-carrier-p 23.5 99 0.0021 33.1 4.3 32 34-70 7-40 (303)
490 PRK13232 nifH nitrogenase redu 23.4 84 0.0018 32.5 3.7 37 36-79 1-43 (273)
491 PLN02583 cinnamoyl-CoA reducta 23.4 96 0.0021 32.3 4.1 30 36-71 6-36 (297)
492 PRK01184 hypothetical protein; 23.3 79 0.0017 30.4 3.2 29 36-69 1-29 (184)
493 cd06315 PBP1_ABC_sugar_binding 23.0 4.6E+02 0.0099 26.6 9.0 34 395-432 55-88 (280)
494 PLN02240 UDP-glucose 4-epimera 23.0 96 0.0021 32.7 4.1 32 34-71 3-35 (352)
495 PRK01185 ppnK inorganic polyph 23.0 2.4E+02 0.0053 29.9 7.0 32 396-435 52-83 (271)
496 PF09152 DUF1937: Domain of un 22.9 88 0.0019 29.3 3.2 36 394-429 77-112 (116)
497 PRK11337 DNA-binding transcrip 22.8 6.7E+02 0.014 26.1 10.3 38 394-433 185-222 (292)
498 PF05368 NmrA: NmrA-like famil 22.8 2.5E+02 0.0054 27.8 6.8 40 390-429 58-98 (233)
499 CHL00072 chlL photochlorophyll 22.8 88 0.0019 33.2 3.7 37 36-80 1-43 (290)
500 TIGR01830 3oxo_ACP_reduc 3-oxo 22.6 72 0.0016 31.2 2.9 27 39-71 1-28 (239)
No 1
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.6e-211 Score=1642.49 Aligned_cols=553 Identities=67% Similarity=1.108 Sum_probs=543.8
Q ss_pred CeEEEEccccccchh------hHHHHHHhcCcCCCCceeEEeccCCccccCCCCCCccCcceEEEccCCccccCCCCccc
Q 006689 36 LQYMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFGLDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYE 109 (635)
Q Consensus 36 ~k~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K~DpYlN~d~gtmsp~eHGEvfV~~DG~E~DlDlG~Ye 109 (635)
||||+|||||+|||| |+|.|||+ +|++||+||||||||+|||||||||||||||||||||+||||||||
T Consensus 1 MKYVlVtGGVISGiGKGv~aSSiG~lLKs-----~Gl~VTsIKIDPYlN~DAGTmSPyEHGEVfVLDDGgEvDLDLGNYE 75 (585)
T KOG2387|consen 1 MKYVLVTGGVISGIGKGIIASSIGVLLKS-----CGLRVTSIKIDPYLNIDAGTMSPYEHGEVFVLDDGGEVDLDLGNYE 75 (585)
T ss_pred CeEEEEeCcEeecccCceeehhHHHHHHh-----cCceeEEEEeccceeccCcccCccccceEEEecCCceecccccchh
Confidence 799999999999999 99999999 9999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcccchHhHHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCCcccccC
Q 006689 110 RFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIE 189 (635)
Q Consensus 110 Rfl~~~l~~~~nittGkiy~~vi~kEr~g~ylG~tvQviPHit~~i~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdie 189 (635)
||||++|||||||||||||++||+|||+|||||||||||||||||||+||+|+|+||||+++.+||||||||||||||||
T Consensus 76 Rfldi~Lt~dNNITtGKiy~~Vi~kER~GdYLGKTVQvvPHiTdaIq~WiervA~iPVdg~~~~pdVCvIELGGTvGDiE 155 (585)
T KOG2387|consen 76 RFLDITLTRDNNITTGKIYQHVIEKERRGDYLGKTVQVVPHITDAIQDWIERVARIPVDGTGGEPDVCVIELGGTVGDIE 155 (585)
T ss_pred hhccceeeccCCcccchHHHHHHhhhhccccccceeEeccchhHHHHHHHHHHhcCCcCCCCCCCCEEEEEcCceecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHhhhhcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEEeeCCCCChhhhccccccCC
Q 006689 190 SMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCH 269 (635)
Q Consensus 190 s~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~KtKptQ~svk~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislfc~ 269 (635)
||||+||+||||+++|++|||+|||||||++++.|||||||||||||+||++|+.||+|+|||.++|..++|+|||+||+
T Consensus 156 s~pfveAl~qFq~~vg~~Nf~~iHVsLVp~l~~~gEqKTKPtQ~svr~LR~lGL~Pd~iaCRs~~~l~~~vk~Kis~FCh 235 (585)
T KOG2387|consen 156 SMPFVEALRQFQFKVGRENFCLIHVSLVPVLSVTGEQKTKPTQHSVRDLRGLGLSPDLIACRSTKPLEMSVKEKISMFCH 235 (585)
T ss_pred ccHHHHHHHhheecccCCcEEEEEEEEEEeccccccccCcchHHHHHHHHhcCCCcceEEEccCCCCCHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeeCCCCCcchhhHHHHHhhhHHHHHHhcCCCCCCC-ccchHHHHHHHHHhcCCCCccEEEEEeccCCCcchHH
Q 006689 270 VPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTK-EPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYL 348 (635)
Q Consensus 270 v~~~~Vi~i~dvdt~y~vpl~LreqG~~~~i~~~l~l~~~~~-~~~l~~W~~lv~~~~~~~~~v~IalVGkY~~l~DaY~ 348 (635)
|+++||+++|||+++|+||++|++||+.+++.++|+|+.... .++|++|+.++++.++....++||+||||+.+.|+|.
T Consensus 236 V~~eqV~~~hDv~siyhvPllL~~q~~~e~l~~~L~L~~~~~~~~~l~~W~~~~~~~d~~~~~V~IalVGKYt~l~DsY~ 315 (585)
T KOG2387|consen 236 VGPEQVVGLHDVSSIYHVPLLLEEQGIVEYLNRRLGLSIISSERPMLDKWSNMAERYDDLQVPVRIALVGKYTKLSDSYL 315 (585)
T ss_pred cCHHHeeeeccCcchhcchHHHhhhhHHHHHHHHhCCCccccchhhHHHHHHHHHhhhcccCcEEEEEEeccccchHHHH
Confidence 999999999999999999999999999999999999975222 3699999999999999999999999999999999999
Q ss_pred HHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCE
Q 006689 349 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPY 428 (635)
Q Consensus 349 SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~eg~i~air~are~~iP~ 428 (635)
|+++||+|++++++.+++|.||+|++||+.+..++|.+||+||+.|+.+|||++|||||+||++|||.|++|||||++|+
T Consensus 316 Sv~KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~RGveG~i~Aak~ARen~iP~ 395 (585)
T KOG2387|consen 316 SVVKALEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGDRGVEGKILAAKWARENKIPF 395 (585)
T ss_pred HHHHHHHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCcccccchhHHHHHHHHHHhcCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEEecCCchhhhccCCceeEE
Q 006689 429 LGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFID 508 (635)
Q Consensus 429 LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~~sll~~iyg~~~~I~ 508 (635)
||||||||+++||||||+++++||+|+||+|++++|||.+|||.+..|||||||||.+++.|.+++|+++++||+...+.
T Consensus 396 LGiCLGmQ~AvIEfaRnvLg~~dAnStEF~p~~~~~vVi~MPE~~~~~mGgtMRLG~R~t~f~~~~s~~~kLYG~~~~V~ 475 (585)
T KOG2387|consen 396 LGICLGMQLAVIEFARNVLGLKDANSTEFDPETKNPVVIFMPEHNKTHMGGTMRLGSRRTVFQDKDSKLRKLYGNVEFVD 475 (585)
T ss_pred EeeehhhhHHHHHHHHHhhCCCCCCccccCCCCCCcEEEECcCCCcccccceeeecccceeeecCchHHHHHhCCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred EEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhcchhhhh
Q 006689 509 ERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQLDTLI 588 (635)
Q Consensus 509 erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~pLF~~Fv~aa~~~~~~~~ 588 (635)
|||||||||||+++..||.+|+.|+|.+.+|.++|++|+++||||+|+||||||.|+|.+|+|+|.++++|+.+.+++++
T Consensus 476 ERHRHRyEVNP~~v~~le~~Gl~FvGkd~~g~rmeI~El~~HP~fVg~QfHPE~~srp~kpsp~flGlv~as~~~l~~~l 555 (585)
T KOG2387|consen 476 ERHRHRYEVNPEMVKQLEQAGLSFVGKDVTGKRMEIIELESHPFFVGVQFHPEFKSRPDKPSPLFLGLVAASCGRLDAYL 555 (585)
T ss_pred hhhhcceecCHHHHHHHHhcCcEEEeecCCCcEEEEEEcCCCCceeeeccCHHHhcCCCCCCcchhHhHHHHHhhHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 006689 589 QGSGS 593 (635)
Q Consensus 589 ~~~~~ 593 (635)
++.+.
T Consensus 556 ~~~~~ 560 (585)
T KOG2387|consen 556 QRGCR 560 (585)
T ss_pred ccccc
Confidence 98766
No 2
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-204 Score=1621.44 Aligned_cols=523 Identities=53% Similarity=0.891 Sum_probs=505.5
Q ss_pred CeEEEEccccccchh------hHHHHHHhcCcCCCCceeEEeccCCccccCCCCCCccCcceEEEccCCccccCCCCccc
Q 006689 36 LQYMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFGLDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYE 109 (635)
Q Consensus 36 ~k~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K~DpYlN~d~gtmsp~eHGEvfV~~DG~E~DlDlG~Ye 109 (635)
||||||||||+|||| |||+|||+ |||+||++|||||||||||||||||||||||||||+||||||||||
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~-----rG~~Vt~~KlDPYlNvDpGTMsP~qHGEVfVtdDG~EtDLDLGhYE 75 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKA-----RGLKVTIQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYE 75 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHH-----CCceEEEEecccceecCCCCCCcccCceEEECCCCccccccccchh
Confidence 699999999999999 99999999 9999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcccchHhHHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCCcccccC
Q 006689 110 RFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIE 189 (635)
Q Consensus 110 Rfl~~~l~~~~nittGkiy~~vi~kEr~g~ylG~tvQviPHit~~i~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdie 189 (635)
||+|++||++||+||||||++||+|||||||||+|||||||||||||+||+++|+ .. +|||||||||||||||
T Consensus 76 RF~~~~l~~~~niTtGkiY~~Vi~kER~GdYLG~TVQvIPHiT~eIk~~I~~~a~------~~-~DvvivEIGGTVGDIE 148 (533)
T COG0504 76 RFLDVNLSKDNNITTGKIYSEVIEKERRGDYLGKTVQVIPHITDEIKDRIREAAD------ST-ADVVIVEIGGTVGDIE 148 (533)
T ss_pred hhcCCCccccCCccccHHHHHHHHHHhcCCccCceeEECCCcchHHHHHHHHhcC------CC-CCEEEEEeCCceeccc
Confidence 9999999999999999999999999999999999999999999999999999996 22 9999999999999999
Q ss_pred cchHHHHHHHhhhhcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEEeeCCCCChhhhccccccCC
Q 006689 190 SMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCH 269 (635)
Q Consensus 190 s~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~KtKptQ~svk~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislfc~ 269 (635)
|+||+||+||||.++|++|++||||||||||.++|||||||||||||+|||+|||||+|||||+++++.+.|+||||||+
T Consensus 149 slpFlEAiRQ~~~e~g~~n~~fiH~tlvpyi~~~gE~KTKPTQhSVkeLR~iGI~PDiii~Rs~~~l~~~~~~KIAlfc~ 228 (533)
T COG0504 149 SLPFLEAIRQLRLELGRENVLFIHVTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILICRSERPLPEEERRKIALFCN 228 (533)
T ss_pred ccHHHHHHHHHHhhhCcccEEEEEEecceeecccCccCCCCchHHHHHHHhcCCCcceEEEecCCCCCHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeeCCCCCcchhhHHHHHhhhHHHHHHhcCCCCCCCccchHHHHHHHHHhcCCCCccEEEEEeccCCCcchHHH
Q 006689 270 VPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLS 349 (635)
Q Consensus 270 v~~~~Vi~i~dvdt~y~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~~W~~lv~~~~~~~~~v~IalVGkY~~l~DaY~S 349 (635)
|++++||+++|++|+|++|+.|++||+++.++++|+|+ .+.+++++|+++++++.++.+.++||+||||+++.|+|+|
T Consensus 229 V~~~~Vi~~~Dv~siY~vPl~l~~qgl~~~i~~~l~l~--~~~~dl~~W~~~v~~i~~~~~~v~IalVGKYv~l~DaY~S 306 (533)
T COG0504 229 VPEEAVISAPDVESIYEVPLLLEKQGLDDYILERLNLN--APEPDLSEWKDLVDKIKNPKKEVTIALVGKYVELPDAYKS 306 (533)
T ss_pred CCHHHeEecccHHHHHHhHHHHHHcchHHHHHHHhCCC--CCCcchHHHHHHHHHhcCCCCceEEEEEECCcCchhHHHH
Confidence 99999999999999999999999999999999999997 4678999999999999998888999999999999999999
Q ss_pred HHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhcc-CCCEEEECCCCCCCcchhHHHHHHHHHHcCCCE
Q 006689 350 ILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGFGNRGVQGKILAAKYAREHRIPY 428 (635)
Q Consensus 350 I~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~-~~DGIllPGGfG~rg~eg~i~air~are~~iP~ 428 (635)
+++||+|+|+++.+++++.||+|++++.++.. .+. .+|||+||||||.||++|+|.|++|||||++|+
T Consensus 307 v~EAL~hag~~~~~~v~i~wIdse~le~~~~~-----------~~~~~~dgIlVPGGFG~RG~eGkI~Ai~yAREn~iP~ 375 (533)
T COG0504 307 VIEALKHAGIALGVKVNIKWIDSEDLEEENAA-----------ELEKLVDGILVPGGFGYRGVEGKIAAIRYARENNIPF 375 (533)
T ss_pred HHHHHHhhhhhcCCceeeEEEccccccccchh-----------hhhhcCCEEEeCCCCCcCchHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999999999865431 122 299999999999999999999999999999999
Q ss_pred EEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCC-cCcCCCccccCceeEEEecCCchhhhccCCceeE
Q 006689 429 LGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFI 507 (635)
Q Consensus 429 LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~-~~h~GgtmrLG~~~v~l~~~~sll~~iyg~~~~I 507 (635)
||||||||++++||||||+||++|+|+||++++++|||++|||+. ...+|||||||.+||.+.++ |+++++|+ +..|
T Consensus 376 lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGGTmRLG~y~~~l~~g-T~a~~lY~-~~~v 453 (533)
T COG0504 376 LGICLGMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTMRLGAYPCRLKPG-TLAAKLYG-KDEI 453 (533)
T ss_pred EEEchhHHHHHHHHHHHhcCCccCcccccCCCCCCceEEeccccccCCcCCceeeccceeeecCCC-cHHHHHhC-CCee
Confidence 999999999999999999999999999999999999999999964 56699999999999999999 99999997 5889
Q ss_pred EEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhcchh
Q 006689 508 DERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQLD 585 (635)
Q Consensus 508 ~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~pLF~~Fv~aa~~~~~ 585 (635)
.|||||||||||+|++.+|.+|++|+|+++||.++|++|+++||||+|+||||||+|+|.+|||||.+|++||.++.+
T Consensus 454 ~ERHRHRYEvN~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~hpfFv~~QfHPEf~SrP~~phPlf~~fv~Aa~~~~~ 531 (533)
T COG0504 454 YERHRHRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFFVATQFHPEFKSRPLRPHPLFVGFVKAALEYKK 531 (533)
T ss_pred eeeccchhhcCHHHHHHHHhCCeEEEEEcCCCCeEEEEEcCCCceEEEEcccccccCCCCCCCccHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987654
No 3
>PLN02327 CTP synthase
Probab=100.00 E-value=1.2e-201 Score=1641.85 Aligned_cols=549 Identities=79% Similarity=1.287 Sum_probs=532.2
Q ss_pred CeEEEEccccccchh------hHHHHHHhcCcCCCCceeEEeccCCccccCCCCCCccCcceEEEccCCccccCCCCccc
Q 006689 36 LQYMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFGLDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYE 109 (635)
Q Consensus 36 ~k~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K~DpYlN~d~gtmsp~eHGEvfV~~DG~E~DlDlG~Ye 109 (635)
||||||||||+|||| |||+|||+ |||+|++||||||||||||||||||||||||||||+||||||||||
T Consensus 1 mk~ifvtGGV~S~lGKGi~~aSig~ll~~-----~g~~V~~~K~DPYlNvD~GtmsP~eHGEVfVt~DG~EtDLDlG~YE 75 (557)
T PLN02327 1 MKYVLVTGGVVSGLGKGVTASSIGVLLKA-----CGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYE 75 (557)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHH-----CCCceeeeecccccccCCCCCCCcccceEEEccCCccccccccchh
Confidence 599999999999999 99999999 9999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcccchHhHHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCCcccccC
Q 006689 110 RFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIE 189 (635)
Q Consensus 110 Rfl~~~l~~~~nittGkiy~~vi~kEr~g~ylG~tvQviPHit~~i~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdie 189 (635)
||||++||++||+||||||++||+|||||||||||||||||||||||+||+++|++|||++..+||||||||||||||||
T Consensus 76 RFl~~~l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHitdeI~~~i~~~~~~~~~~~~~~~dv~i~EiGGTVGDiE 155 (557)
T PLN02327 76 RFLDVTLTRDNNITTGKIYQSVIEKERRGDYLGKTVQVVPHITDAIQEWIERVAKIPVDGKEGPADVCVIELGGTVGDIE 155 (557)
T ss_pred hhcCCccccccCCCcHHHHHHHHHHhhcCCcCCCeeEECCCcHHHHHHHHHHhccCCcccCCCCCCEEEEEeCceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHhhhhcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEEeeCCCCChhhhccccccCC
Q 006689 190 SMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCH 269 (635)
Q Consensus 190 s~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~KtKptQ~svk~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislfc~ 269 (635)
|+||+||+||||+++|++|||||||||||||+++|||||||||||||+|||+|||||+|+|||+++|++++|+|||+||+
T Consensus 156 s~pflEA~rQ~~~~~g~~n~~~iHvt~vp~l~~~gE~KTKPtQhsvk~Lr~~Gi~pd~l~~Rs~~~l~~~~~~Kia~fc~ 235 (557)
T PLN02327 156 SMPFIEALRQFSFRVGPGNFCLIHVSLVPVLGVVGEQKTKPTQHSVRGLRALGLTPHILACRSTKPLEENVKEKLSQFCH 235 (557)
T ss_pred ccHHHHHHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeeCCCCCcchhhHHHHHhhhHHHHHHhcCCCCCCCccchHHHHHHHHHhcCCCCccEEEEEeccCCCcchHHH
Q 006689 270 VPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLS 349 (635)
Q Consensus 270 v~~~~Vi~i~dvdt~y~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~~W~~lv~~~~~~~~~v~IalVGkY~~l~DaY~S 349 (635)
|++++||+++|++|+|+||++|++||+++.|+++|+|+.+.+.+++++|++++++++++.++++|||||||+++.|||.|
T Consensus 236 v~~~~Vi~~~d~~~iY~vPl~l~~q~l~~~i~~~l~l~~~~~~~~~~~W~~~~~~~~~~~~~v~IalVGKY~~l~DAY~S 315 (557)
T PLN02327 236 VPAENILNLHDVSNIWHVPLLLRDQKAHEAILKVLNLLSVAREPDLEEWTARAESCDNLTEPVRIAMVGKYTGLSDSYLS 315 (557)
T ss_pred CCHHHEEEcCCCchHhhhhHHHHHCCcHHHHHHHcCCCCCCCCCChHHHHHHHHHHhCCCCceEEEEEecccCCcHhHHH
Confidence 99999999999999999999999999999999999997223466899999999999998889999999999999999999
Q ss_pred HHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEE
Q 006689 350 ILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYL 429 (635)
Q Consensus 350 I~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~eg~i~air~are~~iP~L 429 (635)
|.+||+|||+++++++++.||+++++++.+..++|++|+++|+.|+++|||++|||||+++.+|++.++++||++++|+|
T Consensus 316 i~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG~~~~~G~i~ai~~are~~iP~L 395 (557)
T PLN02327 316 VLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFGDRGVEGKILAAKYARENKVPYL 395 (557)
T ss_pred HHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCCCcccccHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999887777789999999999999999999999999999999999999999999999
Q ss_pred EEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEEe-cCCchhhhccCCceeEE
Q 006689 430 GICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ-IKDCKSAKLYGNRTFID 508 (635)
Q Consensus 430 GICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~-~~~sll~~iyg~~~~I~ 508 (635)
|||+|||+|+++|||||+||++|+|+||++++++|||++||+++...+|||||||.+++.+. ++ |+++++|+....|.
T Consensus 396 GIClGmQl~viefaRnvlG~~dAnS~Efdp~t~~pvI~~m~e~~~~~~GGtMRLG~~~~~~~~~~-S~l~~iYg~~~~Vn 474 (557)
T PLN02327 396 GICLGMQIAVIEFARSVLGLKDANSTEFDPETPNPCVIFMPEGSKTHMGGTMRLGSRRTYFQTPD-CKSAKLYGNVSFVD 474 (557)
T ss_pred EEcHHHHHHHHHHHHhhcCCcCCCccccCCCCCCCEEEEehhcccccCCceEECCCcccccCCCC-CHHHHHhCCcccee
Confidence 99999999999999999999999999999999999999999988889999999999999998 56 99999997554689
Q ss_pred EEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhcchhhhh
Q 006689 509 ERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQLDTLI 588 (635)
Q Consensus 509 erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~pLF~~Fv~aa~~~~~~~~ 588 (635)
+||||||+||+++++.|++.|++++|+++||.+||++|+++||||+|||||||+.++|.+++|||.+|++||.+++++++
T Consensus 475 erHrHRYeVN~q~v~~le~~gL~vsa~s~dg~~IEaiE~~~~pffvGVQfHPE~~s~p~~~~pLF~~Fv~Aa~~~~~~~~ 554 (557)
T PLN02327 475 ERHRHRYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFVGVQFHPEFKSRPGKPSPLFLGLIAAASGQLDAVL 554 (557)
T ss_pred eeeccccccCHHHHHHHhhcCcEEEEEcCCCCEEEEEEeCCCCEEEEEEcCCCCCCCCCCchHHHHHHHHHHHHhHHhhh
Confidence 99999999999999999899999999999998899999999999999999999999999999999999999999888765
Q ss_pred cc
Q 006689 589 QG 590 (635)
Q Consensus 589 ~~ 590 (635)
++
T Consensus 555 ~~ 556 (557)
T PLN02327 555 NS 556 (557)
T ss_pred cC
Confidence 43
No 4
>PRK05380 pyrG CTP synthetase; Validated
Probab=100.00 E-value=4.4e-191 Score=1556.34 Aligned_cols=523 Identities=52% Similarity=0.896 Sum_probs=504.6
Q ss_pred CCeEEEEccccccchh------hHHHHHHhcCcCCCCceeEEeccCCccccCCCCCCccCcceEEEccCCccccCCCCcc
Q 006689 35 NLQYMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFGLDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNY 108 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K~DpYlN~d~gtmsp~eHGEvfV~~DG~E~DlDlG~Y 108 (635)
+||||||||||+|||| |||+|||+ |||+|++||||||||||||||||||||||||||||+|||||||||
T Consensus 1 ~~k~ifvtGgv~S~lGKGi~~as~g~ll~~-----~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~EtDlDlG~Y 75 (533)
T PRK05380 1 MTKYIFVTGGVVSSLGKGITAASLGRLLKA-----RGLKVTIQKLDPYINVDPGTMSPYQHGEVFVTDDGAETDLDLGHY 75 (533)
T ss_pred CceEEEEcCCcccCcchHHHHHHHHHHHHh-----CCCceEEEeeccccccCCCCCCCccceeEEEccCCCcccccccch
Confidence 3899999999999999 99999999 999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCcccchHhHHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCCccccc
Q 006689 109 ERFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDI 188 (635)
Q Consensus 109 eRfl~~~l~~~~nittGkiy~~vi~kEr~g~ylG~tvQviPHit~~i~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdi 188 (635)
|||||++|||+||+||||||++||+|||+|||||||||||||||||||+||+++| .+|||||||||||||||
T Consensus 76 ERf~~~~l~~~~n~TtG~iy~~vi~kER~G~ylG~tvQviPHit~eI~~~i~~~~--------~~~dv~i~EiGGTvGDi 147 (533)
T PRK05380 76 ERFIDTNLTKYNNVTTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERILAAG--------TDADVVIVEIGGTVGDI 147 (533)
T ss_pred hhhcCCCCccccccchHHHHHHHHHHhhccCccCceEEEccCccHHHHHHHHhcC--------CCCCEEEEEeCCccccc
Confidence 9999999999999999999999999999999999999999999999999999998 37899999999999999
Q ss_pred CcchHHHHHHHhhhhcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEEeeCCCCChhhhccccccC
Q 006689 189 ESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFC 268 (635)
Q Consensus 189 es~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~KtKptQ~svk~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislfc 268 (635)
||+||+|||||||+++|++|+|||||||||||+++|||||||||||||+|||+|||||+|+|||+++|++++|+|||+||
T Consensus 148 Es~pf~ea~rq~~~~~g~~n~~~ih~t~vp~~~~~~E~KtKPtQhsv~~lr~~Gi~pd~i~~R~~~~l~~~~~~Kia~fc 227 (533)
T PRK05380 148 ESLPFLEAIRQLRLELGRENVLFIHLTLVPYIAAAGELKTKPTQHSVKELRSIGIQPDILVCRSERPLPEEEKRKIALFC 227 (533)
T ss_pred cccHHHHHHHHHHHhhCCCcEEEEEEeccceecCCCcccCCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeeeeCCCCCcchhhHHHHHhhhHHHHHHhcCCCCCCCccchHHHHHHHHHhcCCCCccEEEEEeccCCCcchHH
Q 006689 269 HVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYL 348 (635)
Q Consensus 269 ~v~~~~Vi~i~dvdt~y~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~~W~~lv~~~~~~~~~v~IalVGkY~~l~DaY~ 348 (635)
+|++++||+++|++|+|+||++|++||+++.|+++|+|+ .+.+++++|+++++++.++.++++||+||||+++.|||+
T Consensus 228 ~v~~~~vi~~~d~~~iy~vPl~l~~q~~~~~i~~~l~l~--~~~~~~~~w~~~~~~~~~~~~~v~IalVGKY~~l~DaY~ 305 (533)
T PRK05380 228 NVPEEAVISAPDVDSIYEVPLLLHEQGLDDIVLERLGLE--APEPDLSEWEELVERLKNPKGEVTIALVGKYVELPDAYK 305 (533)
T ss_pred CCCHHHEEEcCCCccHHhhhHHHHHCCCHHHHHHHcCCC--CCCCCHHHHHHHHHHHhCCCCceEEEEEeCccCCcHHHH
Confidence 999999999999999999999999999999999999997 467799999999999999988999999999999999999
Q ss_pred HHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCE
Q 006689 349 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPY 428 (635)
Q Consensus 349 SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~eg~i~air~are~~iP~ 428 (635)
|+.+||+|+|+++++++++.|++++++++.+ +++.++++|||++|||||+++.++++.++++|+++++|+
T Consensus 306 Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~----------~~~~L~~~DGIIlpGGfG~~~~~g~i~~i~~a~e~~iPi 375 (533)
T PRK05380 306 SVIEALKHAGIANDVKVNIKWIDSEDLEEEN----------VAELLKGVDGILVPGGFGERGIEGKILAIRYARENNIPF 375 (533)
T ss_pred HHHHHHHHHHHHcCCeeEEEEEChhhccCcc----------hhhHhhcCCEEEecCCCCccccccHHHHHHHHHHCCCcE
Confidence 9999999999999999999999999987543 357789999999999999999999999999999999999
Q ss_pred EEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCC-cCcCCCccccCceeEEEecCCchhhhccCCceeE
Q 006689 429 LGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFI 507 (635)
Q Consensus 429 LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~-~~h~GgtmrLG~~~v~l~~~~sll~~iyg~~~~I 507 (635)
||||+|||+|+++|||+++|+++|+|+||++++++|++.+|+++. ..++|||||+|.|+|.+.++ |+++++|| +..+
T Consensus 376 LGIClGmQll~va~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~~~~~ggtmrlg~h~v~i~~g-S~l~~iyg-~~~i 453 (533)
T PRK05380 376 LGICLGMQLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKDVSDLGGTMRLGAYPCKLKPG-TLAAEIYG-KEEI 453 (533)
T ss_pred EEEchHHHHHHHHhcccccCcccCcccccCCCCCCCeEeeccccccccccCCcccccceeEEECCC-ChHHHHhC-CCce
Confidence 999999999999999999999999999999999999999999854 46899999999999999998 99999997 6679
Q ss_pred EEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhcch
Q 006689 508 DERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQL 584 (635)
Q Consensus 508 ~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~pLF~~Fv~aa~~~~ 584 (635)
.|||||||+||+.+.+.+++.|++++|+++||.++|++|+++||||+|||||||+.++|.+++|||.+|++||.++.
T Consensus 454 ~ErhrHryeVNs~h~qal~~~GL~vsa~s~DgglVEaIEl~~hpfflGVQwHPE~~s~p~~~~pLF~~FV~Aa~~~~ 530 (533)
T PRK05380 454 YERHRHRYEVNNKYREQLEKAGLVFSGTSPDGRLVEIVELPDHPWFVGVQFHPEFKSRPRRPHPLFAGFVKAALENK 530 (533)
T ss_pred eeecccceecCHHHHHHHhhcCeEEEEEcCCCCcEEEEEeCCCCEEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHh
Confidence 99999999999999999988899999999988779999999999999999999999999999999999999997654
No 5
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=100.00 E-value=2.7e-189 Score=1542.09 Aligned_cols=518 Identities=53% Similarity=0.909 Sum_probs=499.0
Q ss_pred CeEEEEccccccchh------hHHHHHHhcCcCCCCceeEEeccCCccccCCCCCCccCcceEEEccCCccccCCCCccc
Q 006689 36 LQYMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFGLDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYE 109 (635)
Q Consensus 36 ~k~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K~DpYlN~d~gtmsp~eHGEvfV~~DG~E~DlDlG~Ye 109 (635)
||||||||||+|||| |||+|||+ |||+|++||||||||+|||||||||||||||||||+||||||||||
T Consensus 1 ~k~i~vtGgv~s~lgkgi~~as~g~ll~~-----~g~~v~~~K~DpYlN~d~GtmsP~~HGEvfVt~DG~E~DlDlG~YE 75 (525)
T TIGR00337 1 MKYIFVTGGVVSSLGKGITAASIGRLLKA-----RGLKVTIIKIDPYINIDPGTMSPLQHGEVFVTDDGAETDLDLGHYE 75 (525)
T ss_pred CcEEEEcCCcccCcchHHHHHHHHHHHHh-----CCCceEEEeecccccCCCCCCCcccCceEEEcCCCccccccccchh
Confidence 699999999999999 99999999 9999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcccchHhHHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCCcccccC
Q 006689 110 RFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIE 189 (635)
Q Consensus 110 Rfl~~~l~~~~nittGkiy~~vi~kEr~g~ylG~tvQviPHit~~i~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdie 189 (635)
||||++|||+||+||||||++||+|||+|||||||||||||||||||+||+++|+ ..+||||||||||||||||
T Consensus 76 Rfl~~~l~~~~n~t~G~iy~~vi~kER~G~ylG~tvQviPHvt~ei~~~i~~~~~------~~~~d~~i~EiGGTvGDiE 149 (525)
T TIGR00337 76 RFLDTNLTRDNNITTGKIYSSVIEKERKGDYLGKTVQIIPHITNEIKDRIKRVAK------ISGPDVVIVEIGGTVGDIE 149 (525)
T ss_pred hhcCCCCcCCCCCChHHHHHHHHHHhhcCCcCCCeEEECCCCcHHHHHHHHHhcc------cCCCCEEEEEeCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999995 4689999999999999999
Q ss_pred cchHHHHHHHhhhhcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEEeeCCCCChhhhccccccCC
Q 006689 190 SMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCH 269 (635)
Q Consensus 190 s~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~KtKptQ~svk~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislfc~ 269 (635)
|+||+||+||||+++|++|+|||||||||||+++||+||||||||||+|||+|||||+|+|||+++|++++|+|||+||+
T Consensus 150 s~pf~ea~rq~~~~~g~~~~~~ih~t~vp~l~~~~e~KtKPtQhsv~~lr~~Gi~pd~~~~R~~~~l~~~~~~Kia~f~~ 229 (525)
T TIGR00337 150 SLPFLEAIRQFRNEVGRENVAFIHVTLVPYIAAAGEQKTKPTQHSVKELRSLGIQPDIIICRSSEPLDPSTKDKIALFCD 229 (525)
T ss_pred ccHHHHHHHHHHHhhCcCcEEEEEEeeeeeecCCCcccCCchHHHHHHHHhCCCCCCEEEEecCCCCCHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeeCCCCCcchhhHHHHHhhhHHHHHHhcCCCCCCCccchHHHHHHHHHhcCCCCccEEEEEeccCCCcchHHH
Q 006689 270 VPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLS 349 (635)
Q Consensus 270 v~~~~Vi~i~dvdt~y~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~~W~~lv~~~~~~~~~v~IalVGkY~~l~DaY~S 349 (635)
|+.++||+++|++|+|+||++|++||+++.|+++|+|+ .+.+++++|+++++++.++.+.++|||||||+++.|+|.|
T Consensus 230 v~~~~vi~~~d~~~iY~vPl~l~~q~~~~~i~~~l~l~--~~~~~~~~W~~~~~~~~~~~~~v~IalVGKY~~~~daY~S 307 (525)
T TIGR00337 230 VEEEAVINAHDVSSIYEVPLLLLKQGLDDYLCRRLNLN--CDEADLSEWEELVEKFINPKHEVTIGIVGKYVELKDSYLS 307 (525)
T ss_pred CCHHHEEEcCCCccHhhhhHHHHHCChHHHHHHHhCCC--CCCCcHHHHHHHHHHhhCCCCCcEEEEEeCCcCCHHHHHH
Confidence 99999999999999999999999999999999999997 3566899999999999998889999999999999999999
Q ss_pred HHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEE
Q 006689 350 ILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYL 429 (635)
Q Consensus 350 I~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~eg~i~air~are~~iP~L 429 (635)
+.+||+|+|+++.+++.+.|+++++++..+ .+.|+++|||++|||||+++.++++.++++++++++|+|
T Consensus 308 I~eAL~~ag~~~~~~V~~~~i~se~i~~~~-----------~~~L~~~dGIiLpGG~G~~~~~g~i~ai~~a~e~~iP~L 376 (525)
T TIGR00337 308 VIEALKHAGAKLDTKVNIKWIDSEDLEEEG-----------AEFLKGVDGILVPGGFGERGVEGKILAIKYARENNIPFL 376 (525)
T ss_pred HHHHHHhCccccCCEEEEEEecHHHhhhhh-----------hhhhcCCCEEEeCCCCCChhhcChHHHHHHHHHcCCCEE
Confidence 999999999999999999999998875422 135889999999999999999999999999999999999
Q ss_pred EEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCC-cCcCCCccccCceeEEEecCCchhhhccCCceeEE
Q 006689 430 GICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFID 508 (635)
Q Consensus 430 GICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~-~~h~GgtmrLG~~~v~l~~~~sll~~iyg~~~~I~ 508 (635)
|||+|||+|++++||||+||++|+|+||++++++||+.+|+++. ..++|||||||.|+|.+.++ |+++++|| +..+.
T Consensus 377 GIClG~Qll~i~~grnv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~~~~~GGTmRLG~h~v~i~~g-S~L~~iyG-~~~i~ 454 (525)
T TIGR00337 377 GICLGMQLAVIEFARNVLGLKGANSTEFDPETKYPVVDLLPEQKDISDLGGTMRLGLYPCILKPG-TLAFKLYG-KEEVY 454 (525)
T ss_pred EEcHHHHHHHHHHHHHhcCCCCCCccccCCCCCCCeeeccCcccccccCCceeeccceEEEECCC-ChHHHHhC-CCcee
Confidence 99999999999999999999999999999999999999999965 58999999999999999998 99999997 55678
Q ss_pred EEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHH
Q 006689 509 ERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAA 579 (635)
Q Consensus 509 erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~pLF~~Fv~a 579 (635)
+||||||+||+.+.+.++..|++++|+++||.+||++|+++||||+|||||||+.++|.+++|||.+|++|
T Consensus 455 erhrHry~VNs~h~q~l~~~GL~vsa~s~Dgg~VEaIE~~~hpfflGVQwHPE~~s~p~~~~~LF~~FV~A 525 (525)
T TIGR00337 455 ERHRHRYEVNNEYREQLENKGLIVSGTSPDGRLVEIIELPDHPFFVACQFHPEFTSRPNRPHPLFLGFVKA 525 (525)
T ss_pred ecccceEEECHHHHHhhhhCCeEEEEEECCCCEEEEEEECCCCeEEEEecCCCCCCCCCchhHHHHHHHhC
Confidence 99999999999999988889999999999977799999999999999999999999999999999999975
No 6
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=100.00 E-value=2.2e-134 Score=1019.11 Aligned_cols=270 Identities=57% Similarity=0.972 Sum_probs=231.0
Q ss_pred CeEEEEccccccchh------hHHHHHHhcCcCCCCceeEEeccCCccccCCCCCCccCcceEEEccCCccccCCCCccc
Q 006689 36 LQYMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFGLDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYE 109 (635)
Q Consensus 36 ~k~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K~DpYlN~d~gtmsp~eHGEvfV~~DG~E~DlDlG~Ye 109 (635)
||||||||||+|||| |||+|||+ |||+|+++|||||||+|||||||||||||||||||+||||||||||
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~-----~G~~V~~~K~DPYlNvD~GtmsP~qHGEVfVt~DG~EtDLDlG~YE 75 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKS-----RGYKVTMIKIDPYLNVDPGTMSPYQHGEVFVTDDGGETDLDLGHYE 75 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHC-----TT--EEEEEEE-SSSSSCCCS-CCTCS-EEE-TTS-EEETHHHHHH
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHh-----CCeeeeeeeeccccccCCCCCCCcCccceeEecCccccccccchHH
Confidence 799999999999999 99999999 9999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcccchHhHHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCCcccccC
Q 006689 110 RFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIE 189 (635)
Q Consensus 110 Rfl~~~l~~~~nittGkiy~~vi~kEr~g~ylG~tvQviPHit~~i~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdie 189 (635)
||||++|||+||+||||||++||+|||+|+|||||||||||||||||+||+++|+ ..+||||||||||||||||
T Consensus 76 RFl~~~l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHitdeIk~~I~~~a~------~~~~Dv~iiEiGGTVGDIE 149 (276)
T PF06418_consen 76 RFLDINLTKDNNITTGKIYQSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAK------KPEPDVVIIEIGGTVGDIE 149 (276)
T ss_dssp HHHTS---GGGEEEHHHHHHHHHHHHHTTTTTTS---CCCHHHHHHHHHHHHHHC------CCT-SEEEEEEESETTSCC
T ss_pred HHhcCCCcccccccHHHHHHHHHHHHhcCcccCceeeecchHHHHHHHHHHHhcC------CCCCCEEEEecCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999996 4489999999999999999
Q ss_pred cchHHHHHHHhhhhcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEEeeCCCCChhhhccccccCC
Q 006689 190 SMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCH 269 (635)
Q Consensus 190 s~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~KtKptQ~svk~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislfc~ 269 (635)
|+||+||+||||+++|++|+||||||||||++++||+||||||||||+|||+|||||+|+|||+++++++.|+|||+||+
T Consensus 150 s~pFlEAirQl~~~~G~~n~~~IHvtlVP~l~~~gE~KTKPtQhSVk~Lr~~GI~PDilvcRs~~~l~~~~k~KIalFc~ 229 (276)
T PF06418_consen 150 SLPFLEAIRQLRNEVGRENVCFIHVTLVPYLKAAGEQKTKPTQHSVKELRSIGIQPDILVCRSERPLDEEIKEKIALFCN 229 (276)
T ss_dssp CHHHHHHHHHHHHHH-TTCEEEEEEEE--EETTTTEE-HHHHHHHHHHHHHTT---SEEEEEESS---HHHHHHHHHHCT
T ss_pred cccHHHHHHHHHHHhCcCcEEEEEEeeeeeeCCCCccCCccHHHHHHHHHhCCCCCCEEEEcCCCCCCHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeeCCCCCcchhhHHHHHhhhHHHHHHhcCCCCCCCccchHHH
Q 006689 270 VPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEW 318 (635)
Q Consensus 270 v~~~~Vi~i~dvdt~y~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~~W 318 (635)
|++++||+++|++|+|+||++|++||+++.|+++|+|+ .+.+++++|
T Consensus 230 V~~e~VI~~~Dv~sIYeVPl~L~~qgl~~~i~~~L~L~--~~~~dl~~W 276 (276)
T PF06418_consen 230 VPPENVISAPDVSSIYEVPLLLEEQGLDEYILKRLNLE--KKEPDLSEW 276 (276)
T ss_dssp S-GGGEEEEE--SSCCHHHHHHHHTTHHHHHHHHTT----------HHH
T ss_pred CCHHHEEEcCCcccHHHHHHHHHHcCcHHHHHHHcCcC--CCCCCcccC
Confidence 99999999999999999999999999999999999998 577899999
No 7
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=100.00 E-value=3.5e-126 Score=953.20 Aligned_cols=249 Identities=54% Similarity=0.921 Sum_probs=246.2
Q ss_pred eEEEEccccccchh------hHHHHHHhcCcCCCCceeEEeccCCccccCCCCCCccCcceEEEccCCccccCCCCcccc
Q 006689 37 QYMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFGLDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYER 110 (635)
Q Consensus 37 k~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K~DpYlN~d~gtmsp~eHGEvfV~~DG~E~DlDlG~YeR 110 (635)
|||||||||+|||| |||+|||+ |||+|+++|||||||+|||||||||||||||||||+|||||||||||
T Consensus 1 kyi~vtGgv~s~lgkgi~~as~g~ll~~-----~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YER 75 (255)
T cd03113 1 KYIFVTGGVVSSLGKGITAASLGRLLKA-----RGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYER 75 (255)
T ss_pred CEEEEeCCcccCcchHHHHHHHHHHHHH-----CCCeEEEEeecccccCCCCCCCCccceeEEEccCCCcccccccchhh
Confidence 89999999999999 99999999 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcccchHhHHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCCcccccCc
Q 006689 111 FMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIES 190 (635)
Q Consensus 111 fl~~~l~~~~nittGkiy~~vi~kEr~g~ylG~tvQviPHit~~i~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdies 190 (635)
|||++|||+||+||||||++||+|||+|||||||||||||||||||+||+++|+ ..++||||||||||||||||
T Consensus 76 fl~~~l~~~~niTtGkiy~~vi~kER~G~ylG~TVQviPHit~eIk~~i~~~~~------~~~~dv~i~EiGGTvGDiEs 149 (255)
T cd03113 76 FLDTNLSRDNNITTGKIYSSVIEKERRGDYLGKTVQVIPHITDEIKERIRRVAE------KSGADVVIVEIGGTVGDIES 149 (255)
T ss_pred hcCCCCcCccCcChHHHHHHHHHHhhccCccCceEEECcCccHHHHHHHHHhhc------cCCCCEEEEEeCCccccccc
Confidence 999999999999999999999999999999999999999999999999999996 46899999999999999999
Q ss_pred chHHHHHHHhhhhcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEEeeCCCCChhhhccccccCCC
Q 006689 191 MPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHV 270 (635)
Q Consensus 191 ~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~KtKptQ~svk~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislfc~v 270 (635)
+||+||+||||+++|++|+|||||||||||+++||||||||||||+.||+.||+||+||||++.+++++.++|||+||+|
T Consensus 150 ~pf~EAirq~~~~~g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~GIqPDgIVcRse~pL~e~~keKIAlFcnV 229 (255)
T cd03113 150 LPFLEAIRQMKLELGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRSEKPLPPEIREKIALFCDV 229 (255)
T ss_pred cHHHHHHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEeCCCCCchHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeCCCCCcchhhHHHHHhhh
Q 006689 271 PEQNIITLYDVPNIWHIPLLLRDQKA 296 (635)
Q Consensus 271 ~~~~Vi~i~dvdt~y~vpl~LreqG~ 296 (635)
+.++|+..+|++++|+||++|++||+
T Consensus 230 pve~VI~~~d~~~iY~vPl~l~~q~~ 255 (255)
T cd03113 230 PPEAVISAPDVDNIYEVPLLLEQQGL 255 (255)
T ss_pred CHHHeeecCCCcchhhccHHHHhCcC
Confidence 99999999999999999999999985
No 8
>PRK06186 hypothetical protein; Validated
Probab=100.00 E-value=4e-63 Score=498.20 Aligned_cols=228 Identities=35% Similarity=0.562 Sum_probs=212.2
Q ss_pred ccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCc
Q 006689 331 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 410 (635)
Q Consensus 331 ~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg 410 (635)
+++|||||||+++.|+|.||.+||+|+|++.++++++.||+++++++. +.|+++|||+||||||.||
T Consensus 1 ~v~IalVGKY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~~l~~~-------------~~l~~~dgilvpgGfg~rg 67 (229)
T PRK06186 1 TLRIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITDP-------------EDLAGFDGIWCVPGSPYRN 67 (229)
T ss_pred CcEEEEEECCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchhhcCCh-------------hhHhhCCeeEeCCCCCccc
Confidence 379999999999999999999999999999999999999999998642 2588999999999999999
Q ss_pred chhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEE
Q 006689 411 VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 490 (635)
Q Consensus 411 ~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l 490 (635)
++|+|.+++|||++++|+||||||||++++|||||+++++||+|+||++++++|+|.+||.. ...+ .|+|.+
T Consensus 68 ~~Gki~ai~~Are~~iP~LGIClGmQ~avIe~arnv~g~~dA~s~E~~~~~~~pvi~~~~~~-~~~~-------~h~v~l 139 (229)
T PRK06186 68 DDGALTAIRFARENGIPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEGDRPVIAPLSCS-LVEK-------TGDIRL 139 (229)
T ss_pred HhHHHHHHHHHHHcCCCeEeechhhHHHHHHHHhhhcCCcCCCcCCCCCCCCCCEEEECccc-cccC-------ceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999831 1122 378999
Q ss_pred ecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCch
Q 006689 491 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 570 (635)
Q Consensus 491 ~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~ 570 (635)
.++ |+++++|| +..+.+||||||+||+.+.+.++..||+++|+++||. ||++|+++||||+|||||||+.++|.+++
T Consensus 140 ~~~-S~l~~iyg-~~~i~erhrHryeVNs~h~q~i~~~GL~vsa~s~DG~-iEaiE~~~hpf~lGVQwHPE~~s~~~~~~ 216 (229)
T PRK06186 140 RPG-SLIARAYG-TLEIEEGYHCRYGVNPEFVAALESGDLRVTGWDEDGD-VRAVELPGHPFFVATLFQPERAALAGRPP 216 (229)
T ss_pred CCC-CHHHHHhC-CCeeeeeccccEEECHHHHHHHhcCCeEEEEEcCCCC-EEEEEeCCCCcEEEEeCCCCccCCCCCCC
Confidence 988 99999996 6678999999999999999999999999999999996 99999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 006689 571 PLFLGLIAAACG 582 (635)
Q Consensus 571 pLF~~Fv~aa~~ 582 (635)
|||.+|+++|.+
T Consensus 217 ~LF~~Fv~aa~~ 228 (229)
T PRK06186 217 PLVRAFLRAARA 228 (229)
T ss_pred HHHHHHHHHHhc
Confidence 999999999864
No 9
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=100.00 E-value=4.6e-46 Score=377.68 Aligned_cols=234 Identities=62% Similarity=1.044 Sum_probs=212.8
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcc
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 411 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~ 411 (635)
++||+||||++..|+|.|++++|.+++.+....+.+.|+++++++..+ .++.+.++|||++||||+.+..
T Consensus 1 ~~i~lvg~~~~~~day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~----------~~~~l~~~dgivl~GG~~~~~~ 70 (235)
T cd01746 1 VRIALVGKYVELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEEN----------AEEALKGADGILVPGGFGIRGV 70 (235)
T ss_pred CEEEEEECCcCCHHHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccc----------hhhhhccCCEEEECCCCCCcch
Confidence 589999999999999999999999999999889999999988765422 1246789999999999999998
Q ss_pred hhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCC-CcCcCCCccccCceeEEE
Q 006689 412 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEG-SKTHMGGTMRLGSRRTYF 490 (635)
Q Consensus 412 eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~-~~~h~GgtmrLG~~~v~l 490 (635)
++.+.++++++++++|+||||+|||+|++++|++++++++++++|+++...+|++.+|... ...++|+|||||.|.+.+
T Consensus 71 ~~~~~~i~~~~~~~~PvlGIClG~Q~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~h~v~i 150 (235)
T cd01746 71 EGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKGVKDLGGTMRLGAYPVIL 150 (235)
T ss_pred hhHHHHHHHHHHCCceEEEEEhHHHHHHHHHHHHhcCCccCCccccCCCCCCCEEEECcccccccccCcccccCceEEEE
Confidence 8999999999999999999999999999999999999999999999999999999998773 567889999999999999
Q ss_pred ecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCch
Q 006689 491 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 570 (635)
Q Consensus 491 ~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~ 570 (635)
.++ |+++++|| +..+.++|+|+|+||++++..+...|++++|+++|+..+|++|.+++|||+|||||||+.+.+.+++
T Consensus 151 ~~~-s~l~~~~g-~~~~~~n~~H~~~v~~~~~~~~~~~~l~v~a~~~ddg~ieaie~~~~pf~lgvQ~HPE~~~~~~~~~ 228 (235)
T cd01746 151 KPG-TLAHKYYG-KDEVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGLVEIVELPDHPFFVGTQFHPEFKSRPLKPH 228 (235)
T ss_pred CCC-ChHHHHhC-CCEEEEecCcccccCHHHHHHHhhCCeEEEEEeCCCCeEEEEEcCCCCcEEEEECCCCCcCCCCCcc
Confidence 998 89999997 5567789999999999999876679999999999433599999999999999999999999998899
Q ss_pred HHHHHHH
Q 006689 571 PLFLGLI 577 (635)
Q Consensus 571 pLF~~Fv 577 (635)
+||.+|+
T Consensus 229 ~lF~~fv 235 (235)
T cd01746 229 PLFVGFV 235 (235)
T ss_pred HHHHHhC
Confidence 9999995
No 10
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=100.00 E-value=5.6e-47 Score=395.72 Aligned_cols=279 Identities=19% Similarity=0.270 Sum_probs=226.1
Q ss_pred hhhhcCCCcccEEEEeeCCCCChhhhccccccCCCCCCCeeeeCCCCCcchhhHHHHHhhhHHHHHHhcC-CCCCCCccc
Q 006689 236 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLN-LQGTTKEPL 314 (635)
Q Consensus 236 k~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislfc~v~~~~Vi~i~dvdt~y~vpl~LreqG~~~~i~~~l~-l~~~~~~~~ 314 (635)
++.||.++++.++|+|+.+..++|||++.||..||+.++|++|.+|||| +|+++||++|+|++.+..-. +++......
T Consensus 67 ~d~Es~~i~~~G~vvre~~~~~Sn~ra~~sL~~~Lk~~gipgI~GIDTR-aLtr~iR~~G~m~~~I~~~~~~~~~~~~~~ 145 (368)
T COG0505 67 EDFESDRIHAAGLVVRELSERPSNWRATESLDEYLKEEGIPGIAGIDTR-ALTRKIREKGAMKGVIATGPELDPAKLLER 145 (368)
T ss_pred hhccccCceEEEEEEcccccccCccccccCHHHHHHHcCCCceecccHH-HHHHHHHhcCCcceEeecCcccChHHHHHH
Confidence 5889999999999999999999999999999999999999999999999 99999999999999665432 221000001
Q ss_pred hHHH-----HHHHHHhcC------------CCCccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCc
Q 006689 315 LKEW-----TSRAEICDG------------LHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLED 377 (635)
Q Consensus 315 l~~W-----~~lv~~~~~------------~~~~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~ 377 (635)
...| .++++.++. .....+|+++ ||+ .+.||++.|..+|+++.+ ++++.-
T Consensus 146 ~~~~~~~~~~dlv~~VSt~~~~~~~~~~~~~~~~~~Vv~i-D~G----vK~nIlr~L~~rg~~vtV------VP~~t~-- 212 (368)
T COG0505 146 ARAFPGILGTDLVKEVSTKEPYTWPGLNGGGEPGKHVVVI-DFG----VKRNILRELVKRGCRVTV------VPADTS-- 212 (368)
T ss_pred HhhcCCCCcccccceeecCCceeccccccCCCCCcEEEEE-EcC----ccHHHHHHHHHCCCeEEE------EcCCCC--
Confidence 1112 234444332 1225699999 798 889999999999999877 343220
Q ss_pred cccCCChhhhhHHHHhc-cCCCEEEECCCCCCCc-chhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCC
Q 006689 378 ATEKENPDAYKAAWKLL-KGADGILVPGGFGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANST 455 (635)
Q Consensus 378 ~~~~~~p~~y~~a~~~L-~~~DGIllPGGfG~rg-~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~ 455 (635)
+.+.+ .++|||+||+|||||. .+..+..++...+.++|+||||||||++++|+|++++||+
T Consensus 213 ------------~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPifGICLGHQllalA~Ga~T~Kmk----- 275 (368)
T COG0505 213 ------------AEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICLGHQLLALALGAKTYKMK----- 275 (368)
T ss_pred ------------HHHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHhcCCceeecc-----
Confidence 23444 5899999999999996 5788999999999999999999999999999999999998
Q ss_pred ccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEE
Q 006689 456 EFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGK 535 (635)
Q Consensus 456 Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~ 535 (635)
| +|+|+ ||||+.... ++..|+ .|||+|+|+++.+. +.+ +++++
T Consensus 276 -F-----------------GHrG~-----NhPV~dl~t---------grv~IT-SQNHGyaVd~~s~~---~~~-~vth~ 318 (368)
T COG0505 276 -F-----------------GHRGA-----NHPVKDLDT---------GRVYIT-SQNHGYAVDEDSLV---ETL-KVTHV 318 (368)
T ss_pred -c-----------------CCCCC-----CcCcccccC---------CeEEEE-ecCCceecChhhcC---CCc-eeEEE
Confidence 4 89997 899986543 366675 49999999998433 233 89999
Q ss_pred e-CCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhcch
Q 006689 536 D-ETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQL 584 (635)
Q Consensus 536 s-~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~pLF~~Fv~aa~~~~ 584 (635)
+ +||+ +|++++++.|. ++||||||.+++|+|.++||+.|++.+.+..
T Consensus 319 nlnDgT-vEGi~h~~~P~-fSVQ~HPEAsPGPhDt~ylFd~Fi~~~~~~~ 366 (368)
T COG0505 319 NLNDGT-VEGIRHKDLPA-FSVQYHPEASPGPHDTRYLFDEFIELMEAAK 366 (368)
T ss_pred eCCCCC-ccceecCCCce-EEEccCCCCCCCCcccHHHHHHHHHHHHHhh
Confidence 8 4555 99999999996 5999999999999999999999999987654
No 11
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=100.00 E-value=2e-40 Score=354.61 Aligned_cols=273 Identities=18% Similarity=0.272 Sum_probs=212.0
Q ss_pred hhhcCCCcccEEEEeeCCCCChhhhccccccCCCCCCCeeeeCCCCCcchhhHHHHHhhhHHHHHHhcCCCCCCCccchH
Q 006689 237 GLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLK 316 (635)
Q Consensus 237 ~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislfc~v~~~~Vi~i~dvdt~y~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~ 316 (635)
++||.++++.++|||+.+..+++|+++.+|..|+++++|++|.+|||| +|+++||++|+|++++..-..+.......+.
T Consensus 69 ~~es~~~~~~g~vv~~~~~~~s~~~~~~~l~~~l~~~~ipgi~gvDTR-~l~~~iR~~G~~~~~i~~~~~~~~~~~~~~~ 147 (360)
T PRK12564 69 DFESDRPHAKGLIVRELSDIPSNWRSEMSLDEYLKENGIPGISGIDTR-ALTRKLREKGAMKGVIATEDFDAEELLEKAR 147 (360)
T ss_pred ccccCCccEEEEEECcCCCCCCccccccCHHHHHHHCCCCCCCCCcHH-HHHHHHHhcCCceEEEecCCCCHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999 9999999999999977542111000000122
Q ss_pred HH-----HHHHHHhcCCC----------CccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccC
Q 006689 317 EW-----TSRAEICDGLH----------EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEK 381 (635)
Q Consensus 317 ~W-----~~lv~~~~~~~----------~~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~ 381 (635)
.| .+++..++... ...+|+++ ||+ ...|++++|+.+|+.+.+. +... .
T Consensus 148 ~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~I~vi-D~G----~k~nivr~L~~~G~~v~vv------p~~~-~----- 210 (360)
T PRK12564 148 AFPGLLGLDLVKEVSTKEPYPWPGPGGELKYKVVAI-DFG----VKRNILRELAERGCRVTVV------PATT-T----- 210 (360)
T ss_pred cCCCCcccCCcceeCCCCCEECCCCCCCCCCEEEEE-eCC----cHHHHHHHHHHCCCEEEEE------eCCC-C-----
Confidence 22 34555554321 14689999 687 6689999999999876552 2111 0
Q ss_pred CChhhhhHHHHhc-cCCCEEEECCCCCCCc-chhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCC
Q 006689 382 ENPDAYKAAWKLL-KGADGILVPGGFGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDP 459 (635)
Q Consensus 382 ~~p~~y~~a~~~L-~~~DGIllPGGfG~rg-~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~ 459 (635)
..+.. .++||||||||||++. ....+..++++.++++|+||||||||+|+.++|+++.+++.
T Consensus 211 --------~~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a~Gg~v~kl~~-------- 274 (360)
T PRK12564 211 --------AEEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFGICLGHQLLALALGAKTYKMKF-------- 274 (360)
T ss_pred --------HHHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCcEeccCC--------
Confidence 01111 2799999999999975 46678899999988999999999999999999999977541
Q ss_pred CCCCCeeeeCCCCCcCcCCCccccCceeEEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEe-CC
Q 006689 460 NTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKD-ET 538 (635)
Q Consensus 460 ~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s-~d 538 (635)
+|+|. ++|+..... ++..+ ..|+|+|+|+++.+ +.++++++++ +|
T Consensus 275 ---------------gh~G~-----~~pv~~~~~---------~~~~i-ts~~H~~~V~~~~l----p~~l~v~a~~~~D 320 (360)
T PRK12564 275 ---------------GHRGA-----NHPVKDLET---------GKVEI-TSQNHGFAVDEDSL----PANLEVTHVNLND 320 (360)
T ss_pred ---------------CccCC-----ceeeEECCC---------CcEEE-EecCcccEEccccc----CCceEEEEEeCCC
Confidence 45554 677765442 12334 45789999987654 4689999998 46
Q ss_pred CCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHH
Q 006689 539 SQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAA 579 (635)
Q Consensus 539 g~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~pLF~~Fv~a 579 (635)
+. +|+++++++|+ +|||||||+.++|.++.+||++|+++
T Consensus 321 g~-iegi~~~~~pi-~gVQfHPE~~~gp~d~~~lF~~F~~~ 359 (360)
T PRK12564 321 GT-VEGLRHKDLPA-FSVQYHPEASPGPHDSAYLFDEFVEL 359 (360)
T ss_pred Cc-EEEEEECCCCE-EEEEeCCcCCCCCCCHHHHHHHHHHh
Confidence 65 99999999995 59999999999999999999999976
No 12
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=100.00 E-value=1.4e-40 Score=355.25 Aligned_cols=276 Identities=20% Similarity=0.305 Sum_probs=212.1
Q ss_pred hhhhcCCCcccEEEEeeCCCCChhhhccccccCCCCCCCeeeeCCCCCcchhhHHHHHhhhHHHHHHhcCCCCCCCccch
Q 006689 236 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLL 315 (635)
Q Consensus 236 k~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislfc~v~~~~Vi~i~dvdt~y~vpl~LreqG~~~~i~~~l~l~~~~~~~~l 315 (635)
.++||.++++.++|||+.+..+++||++.+|..||++++|++|.+|||| +|+++||++|+|++++..-..+.......+
T Consensus 64 ~~~es~~~~~~g~iv~~~~~~~s~~~~~~~l~~~l~~~~i~gi~gvDTR-~lt~~iR~~G~~~~~i~~~~~~~~~~~~~~ 142 (358)
T TIGR01368 64 EDAESKGIHVSGLVVRELSDRYSNWRATESLDQFLKRHGIPGIYGVDTR-ALVKKIREKGTMKGVISTEDSNDEELVQKA 142 (358)
T ss_pred hhhcccCCcEEEEEECCCCCCCCcccccCCHHHHHHHCCCceEeCCcHH-HHHHHHHhcCCeeEEEecCCCChHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999 999999999999998754221100000011
Q ss_pred HHH-----HHHHHHhcCC------C--Cc--cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCcccc
Q 006689 316 KEW-----TSRAEICDGL------H--EP--VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATE 380 (635)
Q Consensus 316 ~~W-----~~lv~~~~~~------~--~~--v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~ 380 (635)
..| .+++..++.. . .. .+|+++ ||+ ...|++++|+.+|+.+.+. .|- . ++
T Consensus 143 ~~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~i~vi-D~G----~k~ni~~~L~~~G~~v~vv---p~~-~-~~----- 207 (358)
T TIGR01368 143 SVSPDIDGINLVAEVSTKEPYTWGQKRGGKKKRVVVI-DFG----VKQNILRRLVKRGCEVTVV---PYD-T-DA----- 207 (358)
T ss_pred HhCCCCccCCccceeccCCCEEeCCCCCCCccEEEEE-eCC----cHHHHHHHHHHCCCEEEEE---cCC-C-CH-----
Confidence 112 2345554431 1 11 589999 687 6689999999999886542 221 1 11
Q ss_pred CCChhhhhHHHHhc-cCCCEEEECCCCCCCc-chhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccC
Q 006689 381 KENPDAYKAAWKLL-KGADGILVPGGFGNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFD 458 (635)
Q Consensus 381 ~~~p~~y~~a~~~L-~~~DGIllPGGfG~rg-~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~ 458 (635)
.+.. ..+|||||+||||++. ....++.++++.+ ++|+||||||||+|+.++|+++.+++ +
T Consensus 208 ----------~~i~~~~pDGIiLSgGPgdp~~~~~~i~~i~~~~~-~~PILGIClG~QlLa~a~Gg~v~kl~------~- 269 (358)
T TIGR01368 208 ----------EEIKKYNPDGIFLSNGPGDPAAVEPAIETIRKLLE-KIPIFGICLGHQLLALAFGAKTYKMK------F- 269 (358)
T ss_pred ----------HHHHhhCCCEEEECCCCCCHHHHHHHHHHHHHHHc-CCCEEEECHHHHHHHHHhCCceeccC------c-
Confidence 1122 2579999999999985 4567888999887 99999999999999999999997754 2
Q ss_pred CCCCCCeeeeCCCCCcCcCCCccccCceeEEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEe-C
Q 006689 459 PNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKD-E 537 (635)
Q Consensus 459 ~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s-~ 537 (635)
+|+|. +||+..... ++..+ ..++|+|+|+++.+. ..++++++++ +
T Consensus 270 ----------------gh~G~-----nhpV~~~~~---------~~v~i-tsqnH~~aV~~~~l~---~~~l~vta~~~n 315 (358)
T TIGR01368 270 ----------------GHRGG-----NHPVKDLIT---------GRVEI-TSQNHGYAVDPDSLP---AGDLEVTHVNLN 315 (358)
T ss_pred ----------------CcCCC-----ceeeEECCC---------CcEEE-eecCCCcEEcccccC---CCceEEEEEECC
Confidence 56665 678765432 12334 357899999876542 3689999998 5
Q ss_pred CCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHh
Q 006689 538 TSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAAC 581 (635)
Q Consensus 538 dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~pLF~~Fv~aa~ 581 (635)
||. +|+++++++|+ +|||||||+.++|.+..+||++|++++.
T Consensus 316 Dg~-Vegi~h~~~pi-~gVQfHPE~~~gp~d~~~lF~~F~~~~~ 357 (358)
T TIGR01368 316 DGT-VEGIRHKDLPV-FSVQYHPEASPGPHDTEYLFDEFIDLIK 357 (358)
T ss_pred CCc-EEEEEECCCCE-EEEEECCCCCCCCCChHHHHHHHHHHhh
Confidence 666 99999999995 6999999999999999999999998874
No 13
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=100.00 E-value=2e-39 Score=346.00 Aligned_cols=274 Identities=18% Similarity=0.223 Sum_probs=212.1
Q ss_pred hhhcCCCcccEEEEeeCCCCChhhhccccccCCCCCCCeeeeCCCCCcchhhHHHHHhhhHHHHHHhcCCCCCCCccchH
Q 006689 237 GLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLK 316 (635)
Q Consensus 237 ~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislfc~v~~~~Vi~i~dvdt~y~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~ 316 (635)
++||.++++.++|||+.+..++|||++.+|..|+++++|++|.+|||| +|+++||++|+|++++..-. +. .....+.
T Consensus 67 ~~es~~~~~~g~vv~~~~~~~s~~~~~~~l~~~l~~~~i~gi~giDTR-~lt~~lR~~G~~~~~i~~~~-~~-~~~~~~~ 143 (354)
T PRK12838 67 DYESKQPQVKGVIVYELSREGSHYRAKQSLDDFLKEWNIPGISGVDTR-ALVKHIREKGTMKASITTTD-DA-HAFDQIK 143 (354)
T ss_pred hhcccCceEEEEEECcCCCCCCcccccCCHHHHHHHCCCCcccCCCHH-HHHHHHHHcCCceEEEecCC-cH-HHHHHHH
Confidence 699999999999999999999999999999999999999999999999 99999999999999775421 10 0001112
Q ss_pred HH---HHHHHHhcCC------CCccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhh
Q 006689 317 EW---TSRAEICDGL------HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAY 387 (635)
Q Consensus 317 ~W---~~lv~~~~~~------~~~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y 387 (635)
.| .++++.++.. ....+|+++ ||+ .+.+++++|..+|+.+.+. .| +. +.
T Consensus 144 ~~~~~~~~v~~vs~~~~~~~~~~~~~V~vi-D~G----~k~ni~~~L~~~G~~v~vv---p~-~~-~~------------ 201 (354)
T PRK12838 144 ALVLPKNVVAQVSTKEPYTYGNGGKHVALI-DFG----YKKSILRSLSKRGCKVTVL---PY-DT-SL------------ 201 (354)
T ss_pred hhhccCCcccEEEcCCCEEeCCCCCEEEEE-CCC----HHHHHHHHHHHCCCeEEEE---EC-CC-CH------------
Confidence 22 3455555542 224689999 686 7899999999999876552 22 11 11
Q ss_pred hHHHHh-ccCCCEEEECCCCCCCcc-hhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCe
Q 006689 388 KAAWKL-LKGADGILVPGGFGNRGV-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPC 465 (635)
Q Consensus 388 ~~a~~~-L~~~DGIllPGGfG~rg~-eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pv 465 (635)
.+. -.++|||||+||||++.. ...++.++.+.++ +|+||||||||+|+.++|+++.+++.
T Consensus 202 ---~~i~~~~~DGIiLsgGPgdp~~~~~~~~~i~~~~~~-~PvlGIClG~QlLa~a~Gg~v~kl~~-------------- 263 (354)
T PRK12838 202 ---EEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISS-YPILGICLGHQLIALALGADTEKLPF-------------- 263 (354)
T ss_pred ---HHHhhcCCCEEEEcCCCCChHHhHHHHHHHHHHhcC-CCEEEECHHHHHHHHHhCCEEecCCC--------------
Confidence 011 137999999999999853 4567788888876 99999999999999999999976541
Q ss_pred eeeCCCCCcCcCCCccccCceeEEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEe-CCCCeEEE
Q 006689 466 VIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKD-ETSQRMEI 544 (635)
Q Consensus 466 i~~mpe~~~~h~GgtmrLG~~~v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s-~dg~~vE~ 544 (635)
+|.|+ ++|+..... ++..+ ..++|+|+|+++.+. +.++.+++.+ +|+. +|+
T Consensus 264 ---------gh~G~-----~hpV~~~~~---------~~~~~-ts~~H~~aV~~~sl~---~~~l~v~a~~~~Dg~-Vea 315 (354)
T PRK12838 264 ---------GHRGA-----NHPVIDLTT---------GRVWM-TSQNHGYVVDEDSLD---GTPLSVRFFNVNDGS-IEG 315 (354)
T ss_pred ---------CccCC-----ceEEEECCC---------CeEEE-eccchheEecccccC---CCCcEEEEEECCCCe-EEE
Confidence 45565 788876543 12223 357899999875442 3568999987 5665 999
Q ss_pred EEeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhc
Q 006689 545 VELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACG 582 (635)
Q Consensus 545 iE~~~~p~fvGVQFHPE~ss~p~~p~pLF~~Fv~aa~~ 582 (635)
++++++| ++|||||||+.++|.+..++|++|++++.+
T Consensus 316 i~~~~~p-i~gVQfHPE~~~gp~d~~~lF~~F~~~~~~ 352 (354)
T PRK12838 316 LRHKKKP-VLSVQFHPEAHPGPHDAEYIFDEFLEMMEK 352 (354)
T ss_pred EEECCCC-EEEEEeCCCCCCCCccHHHHHHHHHHHHHh
Confidence 9999999 579999999999999999999999998853
No 14
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=100.00 E-value=1.7e-38 Score=342.62 Aligned_cols=266 Identities=20% Similarity=0.280 Sum_probs=204.0
Q ss_pred hhhcCCCcccEEEEeeCCCCChhhhccccccCCCCCCCeeeeCCCCCcchhhHHHHHhhhHHHHHHhcCC-CCCCCccch
Q 006689 237 GLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNL-QGTTKEPLL 315 (635)
Q Consensus 237 ~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislfc~v~~~~Vi~i~dvdt~y~vpl~LreqG~~~~i~~~l~l-~~~~~~~~l 315 (635)
+.||.++++.++|||+.+..++|||++.+|..||++++|++|.+|||| +|+++||++|+|++++..-+. +.......+
T Consensus 121 d~ES~~~~~~G~vv~e~~~~~s~~~~~~sL~~~L~~~~ipgI~giDTR-aLt~~iR~~G~m~g~i~~~~~~~~~~~~~~~ 199 (415)
T PLN02771 121 DEESRQCFLAGLVIRSLSISTSNWRCTKTLGDYLAERNIMGIYDVDTR-AITRRLREDGSLIGVLSTEDSKTDEELLKMS 199 (415)
T ss_pred hhcccCCcEEEEEeCcCCCCCCcccccCCHHHHHHHcCCcceecCcHH-HHHHHHHhcCCeeEEEecCCCCCHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999 999999999999998854221 100000011
Q ss_pred HHH----HHHHHHhcCCC---------------------CccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEe
Q 006689 316 KEW----TSRAEICDGLH---------------------EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWI 370 (635)
Q Consensus 316 ~~W----~~lv~~~~~~~---------------------~~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi 370 (635)
..| .++++.++... ...+|+++ ||+ ++.+|++.|...|+.+.+.
T Consensus 200 ~~~~~~~~~lv~~Vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivvi-D~G----~K~nIlr~L~~~G~~v~Vv------ 268 (415)
T PLN02771 200 RSWDIVGIDLISGVSCKSPYEWVDKTNPEWDFNTNSRDGESYHVIAY-DFG----IKHNILRRLASYGCKITVV------ 268 (415)
T ss_pred HhCCCccCCccceecCCCCEEecCCCcccccccccccCCCCCEEEEE-CCC----hHHHHHHHHHHcCCeEEEE------
Confidence 122 23444443210 11589999 688 7899999999999887663
Q ss_pred cCCCCCccccCCChhhhhHHHHhc-cCCCEEEECCCCCCCcc-hhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhccccc
Q 006689 371 PACDLEDATEKENPDAYKAAWKLL-KGADGILVPGGFGNRGV-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLN 448 (635)
Q Consensus 371 ~s~~le~~~~~~~p~~y~~a~~~L-~~~DGIllPGGfG~rg~-eg~i~air~are~~iP~LGICLGmQllaie~GrnV~g 448 (635)
+...- +.+.+ .++|||||+||||++.. ...++.++.+. .++|+||||||||+|+.++|++|.+
T Consensus 269 P~~~~--------------~~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~-~~iPIlGICLGhQlLa~AlGGkv~K 333 (415)
T PLN02771 269 PSTWP--------------ASEALKMKPDGVLFSNGPGDPSAVPYAVETVKELL-GKVPVFGICMGHQLLGQALGGKTFK 333 (415)
T ss_pred CCCCC--------------HHHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHH-hCCCEEEEcHHHHHHHHhcCCeEEE
Confidence 22110 11222 47999999999999853 44566667655 4799999999999999999999987
Q ss_pred ccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCC
Q 006689 449 LRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENA 528 (635)
Q Consensus 449 lkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~ 528 (635)
++ + +|+|+ ++|+..... ++..+. .++|+|+|+++.+ +.
T Consensus 334 ~~------~-----------------Gh~G~-----n~pV~~~~~---------~~v~it-sqnHg~aVd~~sL----p~ 371 (415)
T PLN02771 334 MK------F-----------------GHHGG-----NHPVRNNRT---------GRVEIS-AQNHNYAVDPASL----PE 371 (415)
T ss_pred CC------C-----------------Ccccc-----eEEEEECCC---------CCEEEE-ecCHHHhhccccC----CC
Confidence 65 2 66776 788775432 133343 4799999987654 56
Q ss_pred CeEEEEEe-CCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHH
Q 006689 529 GLSFTGKD-ETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLF 573 (635)
Q Consensus 529 Gl~~sa~s-~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~pLF 573 (635)
++++++++ +|+. +|+++++++|+ +|||||||..++|+|..++|
T Consensus 372 ~~~vt~~nlnDgt-vegi~~~~~pi-~gVQFHPEa~pgp~Ds~~~F 415 (415)
T PLN02771 372 GVEVTHVNLNDGS-CAGLAFPALNV-MSLQYHPEASPGPHDSDNAF 415 (415)
T ss_pred ceEEEEEeCCCCc-EEEEEECCCCE-EEEEcCCCCCCCCCcChhhC
Confidence 89999998 5666 99999999995 69999999999999999887
No 15
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=100.00 E-value=4e-38 Score=338.41 Aligned_cols=277 Identities=19% Similarity=0.269 Sum_probs=208.5
Q ss_pred hhhhcCCCcccEEEEeeCCCCChhhhccccccCCCCCCCeeeeCCCCCcchhhHHHHHhhhHHHHHHhcCCCCCCCccch
Q 006689 236 RGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLL 315 (635)
Q Consensus 236 k~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislfc~v~~~~Vi~i~dvdt~y~vpl~LreqG~~~~i~~~l~l~~~~~~~~l 315 (635)
.++||.++++.++|||+.+..++|||++.+|..|+++++|++|.+|||| +|+++||++|.|++++..-+.+.......+
T Consensus 70 ~~~es~~~~~~g~iv~e~~~~~s~~~~~~sl~~~l~~~~ipgi~gvDTR-~lt~~iR~~G~~~g~i~~~~~~~~~~~~~~ 148 (382)
T CHL00197 70 EDIESVKIQVKGIIAKNICKSSSNWRQQESLVSYLQRHKIPFIFGIDTR-ALTQHLRRFGTMNGCISNQNLNLSYLRAKI 148 (382)
T ss_pred hhhcccCccEEEEEECCCCCCCCcccccCCHHHHHHHCCCceEeCCcHH-HHHHHHHhcCCceEEEEcCCCChHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999 999999999999998864222110000001
Q ss_pred HHH-----HHHHHHhcCC-----------------------CCccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEE
Q 006689 316 KEW-----TSRAEICDGL-----------------------HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVI 367 (635)
Q Consensus 316 ~~W-----~~lv~~~~~~-----------------------~~~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i 367 (635)
..| .+++..++.. ....+|+++ |++ ...|+++.|+.+|+++.+.
T Consensus 149 ~~~~~~~~~~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~vi-D~g----~k~ni~~~L~~~G~~v~vv--- 220 (382)
T CHL00197 149 KESPHMPSSDLIPRVTTSSYYEWDEKSHPSFYLADNKRPHSSYQLKIIVI-DFG----VKYNILRRLKSFGCSITVV--- 220 (382)
T ss_pred HcCCCCccCCccceecCCCCEEecCCCccccccccccccccCCCCEEEEE-ECC----cHHHHHHHHHHCCCeEEEE---
Confidence 111 2344444321 114689999 675 5578999999999876542
Q ss_pred EEecCCCCCccccCCChhhhhHHHH-hccCCCEEEECCCCCCCcc-hhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcc
Q 006689 368 DWIPACDLEDATEKENPDAYKAAWK-LLKGADGILVPGGFGNRGV-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARS 445 (635)
Q Consensus 368 ~wi~s~~le~~~~~~~p~~y~~a~~-~L~~~DGIllPGGfG~rg~-eg~i~air~are~~iP~LGICLGmQllaie~Grn 445 (635)
+... . +.+ ...++|||||+||||++.. ...+..++.+.+.++|+||||||||+|+.++|++
T Consensus 221 ---p~~~-~-------------~~~i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a~Gg~ 283 (382)
T CHL00197 221 ---PATS-P-------------YQDILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFGICMGHQILSLALEAK 283 (382)
T ss_pred ---cCCC-C-------------HHHHhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHHhCCE
Confidence 2111 0 001 1237999999999999863 4456777777777899999999999999999999
Q ss_pred cccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhh
Q 006689 446 VLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARL 525 (635)
Q Consensus 446 V~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~L 525 (635)
+.+++ + +|.|+ ++|+.+. ++..+. .++|+|.++++.+..
T Consensus 284 v~k~~------~-----------------Gh~g~-----n~pv~~~-----------~~v~it-sq~H~~~v~~~sv~~- 322 (382)
T CHL00197 284 TFKLK------F-----------------GHRGL-----NHPSGLN-----------QQVEIT-SQNHGFAVNLESLAK- 322 (382)
T ss_pred EeccC------C-----------------CCCCC-----CEecCCC-----------CceEEe-ecchheEeeccccCC-
Confidence 97754 1 45554 5665421 122343 468999999876542
Q ss_pred cCCCeEEEEEe-CCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhcc
Q 006689 526 ENAGLSFTGKD-ETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQ 583 (635)
Q Consensus 526 e~~Gl~~sa~s-~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~pLF~~Fv~aa~~~ 583 (635)
.++.+++.+ +|+. +|+++++++|+ +|||||||+.++|++..++|+.|++++.+.
T Consensus 323 --~~~~vt~~~~nDgt-vegi~h~~~pi-~gVQFHPE~~~gp~d~~~lf~~Fv~~~~~~ 377 (382)
T CHL00197 323 --NKFYITHFNLNDGT-VAGISHSPKPY-FSVQYHPEASPGPHDADYLFEYFIEIIKHS 377 (382)
T ss_pred --CCcEEEEEECCCCC-EEEEEECCCCc-EEEeeCCCCCCCCCCHHHHHHHHHHHHHhh
Confidence 368898887 5776 99999999995 699999999999999999999999988653
No 16
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.98 E-value=1.9e-32 Score=307.94 Aligned_cols=296 Identities=18% Similarity=0.237 Sum_probs=235.1
Q ss_pred EeeeeeeeecCCCccccCC-ccchhhhhhcCCCcccEEEEeeCCCCChhhhccccccCCCCCCCeeeeCCCCCcchhhHH
Q 006689 212 IHVSLVPVLNVVGEQKTKP-TQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLL 290 (635)
Q Consensus 212 ihv~~vp~~~~~~e~KtKp-tQ~svk~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislfc~v~~~~Vi~i~dvdt~y~vpl~ 290 (635)
|-|---|.|+.-|-- +++ -+...+.++|-+|++.+||+++.+.-.++|++.-||-.|+.+++|+++.||||| +|+++
T Consensus 50 iLv~T~PlIGNyGVP-~~~~DE~l~~~fES~~I~vaglVV~~ys~~ysHW~a~~SL~eWlq~~gVp~i~gvDTR-aLtk~ 127 (1435)
T KOG0370|consen 50 ILVFTYPLIGNYGVP-PDARDEGLLKHFESGQIHVAGLVVGEYSIEYSHWLATKSLGEWLQEEGVPGIYGVDTR-ALTKK 127 (1435)
T ss_pred EEEEecccccCCCCC-CCccccccccccccCceEEEEEEhhhhccchhhhhhhhhHHHHHHhcCCCccccccHH-HHHHH
Confidence 444446878776665 444 455677889999999999999999999999999999999999999999999999 99999
Q ss_pred HHHhhhHHHHHHhcCCCCCCCccchHHH----HHHHHHhcC-------CCCccEEEEEeccCCCcchHHHHHHHHHHccc
Q 006689 291 LRDQKAHEAIFKVLNLQGTTKEPLLKEW----TSRAEICDG-------LHEPVRIAMVGKYTGLSDAYLSILKALLHASV 359 (635)
Q Consensus 291 LreqG~~~~i~~~l~l~~~~~~~~l~~W----~~lv~~~~~-------~~~~v~IalVGkY~~l~DaY~SI~~AL~~ag~ 359 (635)
|||||.|-+-+ -++. ..+. -| .+++..++. ..+..+|+.+ |.+ .+.++++.|..+|+
T Consensus 128 lReqGSmLgkl---~~e~--~~~~--~vdpn~~nLvs~VS~Kep~~y~~Gk~~~I~ai-DcG----~K~N~IRcL~~RGa 195 (1435)
T KOG0370|consen 128 LREQGSMLGKL---SIEK--SPVL--FVDPNKRNLVSQVSTKEPKVYGDGKSLRILAI-DCG----LKYNQIRCLVKRGA 195 (1435)
T ss_pred HHhcCcceeEE---EecC--CCCc--ccCCCcccchhhheeccceEEcCCcccEEEEc-ccC----chHHHHHHHHHhCc
Confidence 99999995543 3321 1111 11 345555543 2345789999 576 78999999999999
Q ss_pred cceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcc-hhHHHHHHHHHHcCCCEEEEehhHHHH
Q 006689 360 DLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-QGKILAAKYAREHRIPYLGICLGMQVA 438 (635)
Q Consensus 360 ~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~-eg~i~air~are~~iP~LGICLGmQll 438 (635)
++.+. .|-- .++ -.++|||+++||||+|.. +..+..++...+.++|+||||+|||++
T Consensus 196 ~vtVv---Pw~~--~i~-----------------~~~yDGlflSNGPGdPe~~~~~v~~vr~lL~~~~PvfGIClGHQll 253 (1435)
T KOG0370|consen 196 EVTVV---PWDY--PIA-----------------KEEYDGLFLSNGPGDPELCPLLVQNVRELLESNVPVFGICLGHQLL 253 (1435)
T ss_pred eEEEe---cCCc--ccc-----------------ccccceEEEeCCCCCchhhHHHHHHHHHHHhCCCCeEEEehhhHHH
Confidence 98873 4421 110 128899999999999974 677888999888889999999999999
Q ss_pred HHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEEecCCchhhhccCCceeEEEEeeeeeeeC
Q 006689 439 VIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVN 518 (635)
Q Consensus 439 aie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~~sll~~iyg~~~~I~erHrHrYeVn 518 (635)
+.+.|+++++|+- +++|. |+||....+ ++..|+ .+||+|+|+
T Consensus 254 A~AaGakT~KmKy-----------------------GNRGh-----NiP~~~~~t---------Grc~IT-SQNHGYAVD 295 (1435)
T KOG0370|consen 254 ALAAGAKTYKMKY-----------------------GNRGH-----NIPCTCRAT---------GRCFIT-SQNHGYAVD 295 (1435)
T ss_pred HHhhCCceEEeec-----------------------cccCC-----CccceeccC---------ceEEEE-ecCCceeec
Confidence 9999999999883 55665 778765443 366775 489999999
Q ss_pred hhhhhhhcCCCeEEEEEe-CCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhcchhhh
Q 006689 519 PDMIARLENAGLSFTGKD-ETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQLDTL 587 (635)
Q Consensus 519 p~~v~~Le~~Gl~~sa~s-~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~pLF~~Fv~aa~~~~~~~ 587 (635)
++.+ +.|++.+..+ +|+. .|++.+...|+| ++|||||.+++|.|...+|+-|+....+.+...
T Consensus 296 ~~tL----p~gWk~lFvN~NDgS-NEGI~Hss~P~f-SvQFHPEat~GP~DTeyLFDiFi~lvkk~kst~ 359 (1435)
T KOG0370|consen 296 PATL----PAGWKPLFVNANDGS-NEGIMHSSKPFF-SVQFHPEATPGPHDTEYLFDVFIELVKKSKSTP 359 (1435)
T ss_pred cccc----cCCCchheeecccCC-CceEecCCCCce-eeecCCcCCCCCcchHHHHHHHHHHHHHHhcCC
Confidence 8765 4788888887 4555 899999999975 999999999999999999999999987655433
No 17
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.95 E-value=8.4e-27 Score=229.08 Aligned_cols=189 Identities=27% Similarity=0.333 Sum_probs=137.6
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECC-C-CCCC
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG-G-FGNR 409 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPG-G-fG~r 409 (635)
++|+|| ||+.. +..|+.+||+++|+++.+. .|| +.+..+|+||+|| | |++.
T Consensus 2 ~~i~II-Dyg~G--NL~Sv~~Aler~G~~~~vs-----------------~d~-------~~i~~AD~liLPGVGaf~~a 54 (204)
T COG0118 2 MMVAII-DYGSG--NLRSVKKALERLGAEVVVS-----------------RDP-------EEILKADKLILPGVGAFGAA 54 (204)
T ss_pred CEEEEE-EcCcc--hHHHHHHHHHHcCCeeEEe-----------------cCH-------HHHhhCCEEEecCCCCHHHH
Confidence 589999 79966 8999999999999886653 233 5688999999999 4 4432
Q ss_pred --c--chhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCC-----CCCCeeeeCCC-CCcCcCCC
Q 006689 410 --G--VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPN-----TKNPCVIFMPE-GSKTHMGG 479 (635)
Q Consensus 410 --g--~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~-----~~~pvi~~mpe-~~~~h~Gg 479 (635)
. ..+.+++++.+.+.++|+||||||||+|. + .|+|.... .++.|+.+-++ .++|||||
T Consensus 55 m~~L~~~gl~~~i~~~~~~~kP~LGIClGMQlLf-e-----------~SeE~~~~~GLg~i~G~V~r~~~~~~kvPHMGW 122 (204)
T COG0118 55 MANLRERGLIEAIKEAVESGKPFLGICLGMQLLF-E-----------RSEEGGGVKGLGLIPGKVVRFPAEDLKVPHMGW 122 (204)
T ss_pred HHHHHhcchHHHHHHHHhcCCCEEEEeHhHHhhh-h-----------cccccCCCCCcceecceEEEcCCCCCCCCcccc
Confidence 1 13678899988888999999999999996 3 36666442 37888887776 68999999
Q ss_pred ccccCceeEEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCC-eEEEEEeCCCCcEEEEcc
Q 006689 480 TMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ-RMEIVELPNHPYFIGVQF 558 (635)
Q Consensus 480 tmrLG~~~v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~-~vE~iE~~~~p~fvGVQF 558 (635)
+- +.+.+++.++..+-.+ -+.|+.|+|.+.+..- -.+++.++.|. ...+|+ +..++|+||
T Consensus 123 N~------l~~~~~~~l~~gi~~~---~~~YFVHSY~~~~~~~-------~~v~~~~~YG~~f~AaV~---k~N~~g~QF 183 (204)
T COG0118 123 NQ------VEFVRGHPLFKGIPDG---AYFYFVHSYYVPPGNP-------ETVVATTDYGEPFPAAVA---KDNVFGTQF 183 (204)
T ss_pred ce------eeccCCChhhcCCCCC---CEEEEEEEEeecCCCC-------ceEEEeccCCCeeEEEEE---eCCEEEEec
Confidence 52 3444554667666432 3568999999986211 12556666663 333443 234789999
Q ss_pred cCCCcCCCCCchHHHHHHHHHH
Q 006689 559 HPEYKSRPGKPSPLFLGLIAAA 580 (635)
Q Consensus 559 HPE~ss~p~~p~pLF~~Fv~aa 580 (635)
|||+|+.. +..++++|++.+
T Consensus 184 HPEKSg~~--Gl~lL~NFl~~~ 203 (204)
T COG0118 184 HPEKSGKA--GLKLLKNFLEWI 203 (204)
T ss_pred CcccchHH--HHHHHHHHHhhc
Confidence 99999886 689999998753
No 18
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.94 E-value=9.2e-27 Score=226.88 Aligned_cols=181 Identities=29% Similarity=0.435 Sum_probs=135.5
Q ss_pred HHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCc-chhHHHHHHHHHHcCC
Q 006689 348 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-VQGKILAAKYAREHRI 426 (635)
Q Consensus 348 ~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg-~eg~i~air~are~~i 426 (635)
.|+.++|+..|+++. +.|++++.. ..++.+.++|||+|+||++++. .+..+.++++++++++
T Consensus 11 ~~l~~~l~~~~~~~~----v~~~~~~~~-------------~~~~~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~ 73 (192)
T PF00117_consen 11 HSLVRALRELGIDVE----VVRVDSDFE-------------EPLEDLDDYDGIIISGGPGSPYDIEGLIELIREARERKI 73 (192)
T ss_dssp HHHHHHHHHTTEEEE----EEETTGGHH-------------HHHHHTTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCeEE----EEECCCchh-------------hhhhhhcCCCEEEECCcCCccccccccccccccccccce
Confidence 577788888885544 456654211 1112478999999999999988 7899999999999999
Q ss_pred CEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEEecCCchhhhccCCcee
Q 006689 427 PYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTF 506 (635)
Q Consensus 427 P~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~~sll~~iyg~~~~ 506 (635)
|+||||+|||+|+.++|++|...+ ..+++||++.+ .....+.++.... ..
T Consensus 74 PilGIC~G~Q~la~~~G~~v~~~~----------------------~~~~~g~~~~~-----~~~~~~~~~~~~~---~~ 123 (192)
T PF00117_consen 74 PILGICLGHQILAHALGGKVVPSP----------------------EKPHHGGNIPI-----SETPEDPLFYGLP---ES 123 (192)
T ss_dssp EEEEETHHHHHHHHHTTHEEEEEE----------------------SEEEEEEEEEE-----EEEEEHGGGTTST---SE
T ss_pred EEEEEeehhhhhHHhcCCcccccc----------------------ccccccccccc-----ccccccccccccc---cc
Confidence 999999999999999999986422 12556765433 2222123444432 34
Q ss_pred EEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHH
Q 006689 507 IDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAA 579 (635)
Q Consensus 507 I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~pLF~~Fv~a 579 (635)
...++.|+|+|++. .+.+.|++++|++.++..++++...++| ++|+|||||+++++.+...|+..|++|
T Consensus 124 ~~~~~~H~~~v~~~---~~~p~~~~~la~s~~~~~~~~~~~~~~~-i~g~QfHPE~~~~~~~~~~l~nf~~~~ 192 (192)
T PF00117_consen 124 FKAYQYHSDAVNPD---DLLPEGFEVLASSSDGCPIQAIRHKDNP-IYGVQFHPEFSSSPGGPQLLKNFFLKA 192 (192)
T ss_dssp EEEEEEECEEEEEG---HHHHTTEEEEEEETTTTEEEEEEECTTS-EEEESSBTTSTTSTTHHHHHHHHHHHH
T ss_pred cccccccceeeecc---cccccccccccccccccccccccccccE-EEEEecCCcCCCCCCcchhhhheeEeC
Confidence 66788999999975 2237899999999887448999999998 789999999999998777777666664
No 19
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.93 E-value=4.8e-25 Score=214.44 Aligned_cols=176 Identities=25% Similarity=0.404 Sum_probs=128.9
Q ss_pred EEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCc-ch
Q 006689 334 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-VQ 412 (635)
Q Consensus 334 IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg-~e 412 (635)
|+++ ||++ -.++.++|+.+|+.+.+. ..+. +.+ .....++|||+++||+|++. ..
T Consensus 1 i~i~-d~g~----~~~~~~~l~~~G~~~~~~----~~~~-~~~--------------~~~~~~~dgiil~GG~~~~~~~~ 56 (178)
T cd01744 1 VVVI-DFGV----KHNILRELLKRGCEVTVV----PYNT-DAE--------------EILKLDPDGIFLSNGPGDPALLD 56 (178)
T ss_pred CEEE-ecCc----HHHHHHHHHHCCCeEEEE----ECCC-CHH--------------HHhhcCCCEEEECCCCCChhHhH
Confidence 5677 6873 358899999999776542 2121 110 01235799999999998864 36
Q ss_pred hHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEEec
Q 006689 413 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQI 492 (635)
Q Consensus 413 g~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~ 492 (635)
..++.++++.++++|+||||+|||+|+.++|++|..++. ++.|. .+++....
T Consensus 57 ~~~~~~~~~~~~~~PvlGIC~G~Q~l~~~~Gg~v~~~~~-----------------------~~~g~-----~~~v~~~~ 108 (178)
T cd01744 57 EAIKTVRKLLGKKIPIFGICLGHQLLALALGAKTYKMKF-----------------------GHRGS-----NHPVKDLI 108 (178)
T ss_pred HHHHHHHHHHhCCCCEEEECHHHHHHHHHcCCceecCCC-----------------------CCCCC-----ceeeEEcC
Confidence 678889999999999999999999999999999865331 22232 34444322
Q ss_pred CCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeC-CCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchH
Q 006689 493 KDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDE-TSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 571 (635)
Q Consensus 493 ~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~-dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~p 571 (635)
. .+. ...++.|+|+++++.+ +.+++++|++. ++. +|+++++++|+ +|+|||||+..++.+..+
T Consensus 109 ~---------~~~-~~v~~~H~~~v~~~~l----p~~~~v~a~s~~~~~-i~a~~~~~~~i-~GvQfHPE~~~~~~~~~~ 172 (178)
T cd01744 109 T---------GRV-YITSQNHGYAVDPDSL----PGGLEVTHVNLNDGT-VEGIRHKDLPV-FSVQFHPEASPGPHDTEY 172 (178)
T ss_pred C---------CCc-EEEEcCceEEEccccc----CCceEEEEEECCCCc-EEEEEECCCCe-EEEeeCCCCCCCCCCchH
Confidence 2 111 1245789999986554 56899999984 565 99999999994 699999999999888899
Q ss_pred HHHHHH
Q 006689 572 LFLGLI 577 (635)
Q Consensus 572 LF~~Fv 577 (635)
||.+|+
T Consensus 173 lf~~f~ 178 (178)
T cd01744 173 LFDEFL 178 (178)
T ss_pred hHhhhC
Confidence 999995
No 20
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.93 E-value=5.1e-25 Score=216.34 Aligned_cols=183 Identities=20% Similarity=0.251 Sum_probs=130.6
Q ss_pred EEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHH-hccCCCEEEECCCCCCCcch
Q 006689 334 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK-LLKGADGILVPGGFGNRGVQ 412 (635)
Q Consensus 334 IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~-~L~~~DGIllPGGfG~rg~e 412 (635)
|.+|+.|.++. .++.+.|+..|+++.+. ..+++.. .+ ...++||||++||||++...
T Consensus 2 il~idn~Dsft---~nl~~~l~~~g~~v~v~------~~~~~~~-------------~~~~~~~~d~iils~GPg~p~~~ 59 (187)
T PRK08007 2 ILLIDNYDSFT---WNLYQYFCELGADVLVK------RNDALTL-------------ADIDALKPQKIVISPGPCTPDEA 59 (187)
T ss_pred EEEEECCCccH---HHHHHHHHHCCCcEEEE------eCCCCCH-------------HHHHhcCCCEEEEcCCCCChHHC
Confidence 78998888663 46889999988776552 2222110 01 12378999999999998643
Q ss_pred h-HHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEEe
Q 006689 413 G-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 491 (635)
Q Consensus 413 g-~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~ 491 (635)
+ .+..++. .+.++|+||||+|||+|+.++|++|.+... ++.|+ ..++...
T Consensus 60 ~~~~~~~~~-~~~~~PiLGIClG~Q~la~a~Gg~v~~~~~-----------------------~~~g~-----~~~v~~~ 110 (187)
T PRK08007 60 GISLDVIRH-YAGRLPILGVCLGHQAMAQAFGGKVVRAAK-----------------------VMHGK-----TSPITHN 110 (187)
T ss_pred CccHHHHHH-hcCCCCEEEECHHHHHHHHHcCCEEEeCCC-----------------------cccCC-----ceEEEEC
Confidence 3 3455554 457899999999999999999999965331 22343 3344443
Q ss_pred cCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchH
Q 006689 492 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 571 (635)
Q Consensus 492 ~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~p 571 (635)
.. +++..+. ... ...+.|+|.|++..+ +.+++++|+++++. +|+++++++| ++|||||||..+.+ ++..
T Consensus 111 ~~-~l~~~~~-~~~--~v~~~H~~~v~~~~l----p~~~~v~a~~~~~~-i~a~~~~~~~-i~GvQfHPE~~~t~-~G~~ 179 (187)
T PRK08007 111 GE-GVFRGLA-NPL--TVTRYHSLVVEPDSL----PACFEVTAWSETRE-IMGIRHRQWD-LEGVQFHPESILSE-QGHQ 179 (187)
T ss_pred CC-CcccCCC-CCc--EEEEcchhEEccCCC----CCCeEEEEEeCCCc-EEEEEeCCCC-EEEEEeCCcccCCc-chHH
Confidence 33 5565553 232 345678898865433 67999999999987 9999999988 67999999997765 6789
Q ss_pred HHHHHHH
Q 006689 572 LFLGLIA 578 (635)
Q Consensus 572 LF~~Fv~ 578 (635)
+|++|++
T Consensus 180 il~nFl~ 186 (187)
T PRK08007 180 LLANFLH 186 (187)
T ss_pred HHHHHhh
Confidence 9999985
No 21
>PLN02335 anthranilate synthase
Probab=99.93 E-value=7.8e-25 Score=220.73 Aligned_cols=199 Identities=17% Similarity=0.213 Sum_probs=135.7
Q ss_pred CCccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHH-hccCCCEEEECCCCC
Q 006689 329 HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK-LLKGADGILVPGGFG 407 (635)
Q Consensus 329 ~~~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~-~L~~~DGIllPGGfG 407 (635)
.+..+|++|+.|.++. .++.+.|+.+|+++.+. +.+.++ +.+ ...++|||||+||||
T Consensus 16 ~~~~~ilviD~~dsft---~~i~~~L~~~g~~~~v~------~~~~~~-------------~~~~~~~~~d~iVisgGPg 73 (222)
T PLN02335 16 KQNGPIIVIDNYDSFT---YNLCQYMGELGCHFEVY------RNDELT-------------VEELKRKNPRGVLISPGPG 73 (222)
T ss_pred CccCcEEEEECCCCHH---HHHHHHHHHCCCcEEEE------ECCCCC-------------HHHHHhcCCCEEEEcCCCC
Confidence 3446899996555332 47889999999887653 221111 001 124689999999999
Q ss_pred CCcchhH-HHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCce
Q 006689 408 NRGVQGK-ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSR 486 (635)
Q Consensus 408 ~rg~eg~-i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~ 486 (635)
++...+. .+.++ +.+.++|+||||||||+|+.++|++|...+.. ...|+ ..
T Consensus 74 ~p~d~~~~~~~~~-~~~~~~PiLGIClG~QlLa~alGg~v~~~~~~----------------------~~~G~-----~~ 125 (222)
T PLN02335 74 TPQDSGISLQTVL-ELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFG----------------------VMHGK-----SS 125 (222)
T ss_pred ChhhccchHHHHH-HhCCCCCEEEecHHHHHHHHHhCCEEEeCCCc----------------------cccCc-----ee
Confidence 9864332 23333 23457999999999999999999998543200 11222 33
Q ss_pred eEEEecC--CchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcC
Q 006689 487 RTYFQIK--DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKS 564 (635)
Q Consensus 487 ~v~l~~~--~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss 564 (635)
++..... ++++..+. ... ...+.|+|.|+++.++ +.+++++|+++++. +++++++++|+++|+|||||+..
T Consensus 126 ~v~~~~~~~~~Lf~~l~-~~~--~v~~~H~~~v~~~~lp---~~~~~v~a~~~~~~-v~ai~~~~~~~i~GvQfHPE~~~ 198 (222)
T PLN02335 126 PVHYDEKGEEGLFSGLP-NPF--TAGRYHSLVIEKDTFP---SDELEVTAWTEDGL-IMAARHRKYKHIQGVQFHPESII 198 (222)
T ss_pred eeEECCCCCChhhhCCC-CCC--EEEechhheEecccCC---CCceEEEEEcCCCC-EEEEEecCCCCEEEEEeCCCCCC
Confidence 4443321 25666654 232 3467889999765432 33499999998887 99999999998889999999986
Q ss_pred CCCCchHHHHHHHHHHhcchh
Q 006689 565 RPGKPSPLFLGLIAAACGQLD 585 (635)
Q Consensus 565 ~p~~p~pLF~~Fv~aa~~~~~ 585 (635)
.+ ++..+|++|++++.++.+
T Consensus 199 ~~-~g~~i~~nF~~~~~~~~~ 218 (222)
T PLN02335 199 TT-EGKTIVRNFIKIIEKKES 218 (222)
T ss_pred Ch-hHHHHHHHHHHHHHhhcc
Confidence 65 689999999998765543
No 22
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.92 E-value=3.2e-24 Score=210.40 Aligned_cols=185 Identities=20% Similarity=0.267 Sum_probs=126.9
Q ss_pred EEEEeccCCCcchH-HHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcch
Q 006689 334 IAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 412 (635)
Q Consensus 334 IalVGkY~~l~DaY-~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~e 412 (635)
|.|++.|. +| .++.+.|..+|+++.+. .| ...+ + . ..+.+ ++||||++||||++...
T Consensus 2 iliid~~d----~f~~~i~~~l~~~g~~~~v~---~~---~~~~-------~---~-~~~~~-~~dglIlsgGpg~~~d~ 59 (189)
T PRK05670 2 ILLIDNYD----SFTYNLVQYLGELGAEVVVY---RN---DEIT-------L---E-EIEAL-NPDAIVLSPGPGTPAEA 59 (189)
T ss_pred EEEEECCC----chHHHHHHHHHHCCCcEEEE---EC---CCCC-------H---H-HHHhC-CCCEEEEcCCCCChHHc
Confidence 78886443 54 47889999999887652 12 1100 0 0 01223 48999999999998532
Q ss_pred -hHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEEe
Q 006689 413 -GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 491 (635)
Q Consensus 413 -g~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~ 491 (635)
.....++. .+.++|+||||+|||+|+.++|++|...+. ++.|+ .+++. .
T Consensus 60 ~~~~~~l~~-~~~~~PvLGIClG~Qlla~alGg~v~~~~~-----------------------~~~g~-----~~~v~-~ 109 (189)
T PRK05670 60 GISLELIRE-FAGKVPILGVCLGHQAIGEAFGGKVVRAKE-----------------------IMHGK-----TSPIE-H 109 (189)
T ss_pred chHHHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEecCC-----------------------cccCc-----eeEEE-e
Confidence 23444554 356899999999999999999999865321 12233 23444 2
Q ss_pred cCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchH
Q 006689 492 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 571 (635)
Q Consensus 492 ~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~p 571 (635)
.+++++..+. .+ ...+|.|+|.|++.. + +.+++++|+++++. +|+++++++| ++|+|||||+...+ ++.+
T Consensus 110 ~~~~l~~~~~-~~--~~v~~~H~~~v~~~~---l-p~~~~~la~s~~~~-i~a~~~~~~~-~~gvQfHPE~~~~~-~g~~ 179 (189)
T PRK05670 110 DGSGIFAGLP-NP--FTVTRYHSLVVDRES---L-PDCLEVTAWTDDGE-IMGVRHKELP-IYGVQFHPESILTE-HGHK 179 (189)
T ss_pred CCCchhccCC-CC--cEEEcchhheecccc---C-CCceEEEEEeCCCc-EEEEEECCCC-EEEEeeCCCcCCCc-chHH
Confidence 2324444443 22 345688999986422 3 67899999998776 9999999999 57999999997654 6889
Q ss_pred HHHHHHHHH
Q 006689 572 LFLGLIAAA 580 (635)
Q Consensus 572 LF~~Fv~aa 580 (635)
+|++|++++
T Consensus 180 i~~~F~~~~ 188 (189)
T PRK05670 180 LLENFLELA 188 (189)
T ss_pred HHHHHHHhh
Confidence 999999875
No 23
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.92 E-value=5.6e-24 Score=208.05 Aligned_cols=188 Identities=21% Similarity=0.299 Sum_probs=138.6
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcc
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 411 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~ 411 (635)
++|.+|+.|.++. .++.+.|+..|+++.+. .+. +++. .+-...++|+|++|+|||.|..
T Consensus 2 ~~IL~IDNyDSFt---yNLv~yl~~lg~~v~V~-----rnd-~~~~------------~~~~~~~pd~iviSPGPG~P~d 60 (191)
T COG0512 2 MMILLIDNYDSFT---YNLVQYLRELGAEVTVV-----RND-DISL------------ELIEALKPDAIVISPGPGTPKD 60 (191)
T ss_pred ceEEEEECccchH---HHHHHHHHHcCCceEEE-----ECC-ccCH------------HHHhhcCCCEEEEcCCCCChHH
Confidence 5799999998773 47889999999776653 221 1110 1112347899999999999986
Q ss_pred hh-HHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEE
Q 006689 412 QG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 490 (635)
Q Consensus 412 eg-~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l 490 (635)
.| ..++++.+ ..++|+||||||||.++.+||++|...+.. -.| ......
T Consensus 61 ~G~~~~~i~~~-~~~~PiLGVCLGHQai~~~fGg~V~~a~~~-----------------------~HG------K~s~i~ 110 (191)
T COG0512 61 AGISLELIRRF-AGRIPILGVCLGHQAIAEAFGGKVVRAKEP-----------------------MHG------KTSIIT 110 (191)
T ss_pred cchHHHHHHHh-cCCCCEEEECccHHHHHHHhCCEEEecCCC-----------------------cCC------eeeeee
Confidence 66 67777777 668999999999999999999998653311 112 222222
Q ss_pred ecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCch
Q 006689 491 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 570 (635)
Q Consensus 491 ~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~ 570 (635)
..++.++++++ +...+ .|+ |+..++++.+ +..++++|++.|+..+++++++++|. +|+|||||.--++ .++
T Consensus 111 h~g~~iF~glp-~~f~v-~RY-HSLvv~~~~l----P~~l~vtA~~~d~~~IMai~h~~~pi-~gvQFHPESilT~-~G~ 181 (191)
T COG0512 111 HDGSGLFAGLP-NPFTV-TRY-HSLVVDPETL----PEELEVTAESEDGGVIMAVRHKKLPI-YGVQFHPESILTE-YGH 181 (191)
T ss_pred cCCcccccCCC-CCCEE-Eee-EEEEecCCCC----CCceEEEEEeCCCCEEEEEeeCCCCE-EEEecCCcccccc-chH
Confidence 33446777777 35455 454 8888887665 56899999998876699999999995 6999999988776 478
Q ss_pred HHHHHHHHH
Q 006689 571 PLFLGLIAA 579 (635)
Q Consensus 571 pLF~~Fv~a 579 (635)
.++.+|++.
T Consensus 182 ~il~Nfl~~ 190 (191)
T COG0512 182 RILENFLRL 190 (191)
T ss_pred HHHHHHHhh
Confidence 999999975
No 24
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.92 E-value=1.4e-24 Score=218.41 Aligned_cols=167 Identities=26% Similarity=0.446 Sum_probs=129.8
Q ss_pred HHHhccCCCEEEECCC-------CCCCc-----------chhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccC
Q 006689 390 AWKLLKGADGILVPGG-------FGNRG-----------VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRD 451 (635)
Q Consensus 390 a~~~L~~~DGIllPGG-------fG~rg-----------~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkd 451 (635)
+.+.+...|||++||| +|... ....+.++|.|.|.++|+||||+|||+|+++||++++. +
T Consensus 54 ~~~~l~~iDgliltGg~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNVa~GGtL~q--~ 131 (243)
T COG2071 54 ARQYLDLIDGLILTGGSNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNVALGGTLYQ--D 131 (243)
T ss_pred HHHHHhhccEEEecCCCcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHHHhcCeeeh--h
Confidence 3456788999999999 23211 12468889999999999999999999999999999853 2
Q ss_pred CCCCccCCCCCCCeeeeCCCCCcCcC-CCccccCceeEEEecCCchhhhccCCc-eeEEEEeeeeeeeChhhhhhhcCCC
Q 006689 452 ANSTEFDPNTKNPCVIFMPEGSKTHM-GGTMRLGSRRTYFQIKDCKSAKLYGNR-TFIDERHRHRYEVNPDMIARLENAG 529 (635)
Q Consensus 452 a~S~Ef~~~~~~pvi~~mpe~~~~h~-GgtmrLG~~~v~l~~~~sll~~iyg~~-~~I~erHrHrYeVnp~~v~~Le~~G 529 (635)
...... . ..|+ +....+..|++.+.++ |.+++++|+. ..|++.|+ +.+++| ..|
T Consensus 132 i~~~~~----------~-----~~H~~~~~~~~~~H~V~i~~~-s~La~i~g~~~~~VNS~Hh-------QaIk~L-a~~ 187 (243)
T COG2071 132 ISEQPG----------H-----IDHRQPNPVHIESHEVHIEPG-SKLAKILGESEFMVNSFHH-------QAIKKL-APG 187 (243)
T ss_pred hhcccc----------c-----ccccCCCCcccceeEEEecCC-ccHHHhcCccceeecchHH-------HHHHHh-CCC
Confidence 211110 0 0121 1222334799999998 8999999855 56777765 788888 889
Q ss_pred eEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCC-chHHHHHHHHHHhcc
Q 006689 530 LSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGK-PSPLFLGLIAAACGQ 583 (635)
Q Consensus 530 l~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~-p~pLF~~Fv~aa~~~ 583 (635)
|+++|+++||. ||+||.+++.|++|||||||+...... ...||+.|++++..+
T Consensus 188 L~V~A~a~DG~-VEAie~~~~~fvlGVQWHPE~~~~~~~~~~~LFe~F~~~~~~~ 241 (243)
T COG2071 188 LVVEARAPDGT-VEAVEVKNDAFVLGVQWHPEYLVDTNPLSLALFEAFVNACKKH 241 (243)
T ss_pred cEEEEECCCCc-EEEEEecCCceEEEEecChhhhccCChHHHHHHHHHHHHHHhh
Confidence 99999999998 999999999999999999999988763 356999999998764
No 25
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.92 E-value=6.3e-24 Score=207.83 Aligned_cols=184 Identities=20% Similarity=0.257 Sum_probs=132.2
Q ss_pred EEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhcc--CCCEEEECCCCCCCcc
Q 006689 334 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK--GADGILVPGGFGNRGV 411 (635)
Q Consensus 334 IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~--~~DGIllPGGfG~rg~ 411 (635)
|++| ||++. .-.++.++|+..|+++.+. +.++. + +.+. ++||||+|||+++...
T Consensus 1 i~ii-D~g~~--~~~~l~~~l~~~g~~~~~~----~~~~~----------~-------~~~~~~~~~glii~Gg~~~~~~ 56 (188)
T TIGR00888 1 ILVL-DFGSQ--YTQLIARRLRELGVYSELV----PNTTP----------L-------EEIREKNPKGIILSGGPSSVYA 56 (188)
T ss_pred CEEE-ECCch--HHHHHHHHHHHcCCEEEEE----eCCCC----------H-------HHHhhcCCCEEEECCCCCCcCc
Confidence 5788 67754 4567889999999876542 22211 1 1222 3569999999988765
Q ss_pred hhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEEe
Q 006689 412 QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 491 (635)
Q Consensus 412 eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~ 491 (635)
......++.+.+.++|+||||+|||+|+.++|++|...+. +++| ..++.+.
T Consensus 57 ~~~~~~i~~~~~~~~PilGIC~G~Qll~~~lgg~v~~~~~-----------------------~~~g------~~~v~~~ 107 (188)
T TIGR00888 57 ENAPRADEKIFELGVPVLGICYGMQLMAKQLGGEVGRAEK-----------------------REYG------KAELEIL 107 (188)
T ss_pred CCchHHHHHHHhCCCCEEEECHHHHHHHHhcCceEecCCC-----------------------ccce------eEEEEEe
Confidence 5567778888899999999999999999999998854221 2334 3456655
Q ss_pred cCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchH
Q 006689 492 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSP 571 (635)
Q Consensus 492 ~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~p 571 (635)
+.+.++..+. +. +..++.|+|.+. .+ +.+++++|+++++. +++++.++.| ++|+|||||++.++ ++..
T Consensus 108 ~~~~l~~~~~-~~--~~~~~~H~~~v~-----~l-~~~~~vla~~~~~~-v~a~~~~~~~-~~g~QfHPE~~~~~-~g~~ 175 (188)
T TIGR00888 108 DEDDLFRGLP-DE--STVWMSHGDKVK-----EL-PEGFKVLATSDNCP-VAAMAHEEKP-IYGVQFHPEVTHTE-YGNE 175 (188)
T ss_pred cCCHhhcCCC-CC--cEEEeEccceee-----cC-CCCCEEEEECCCCC-eEEEEECCCC-EEEEeeCCccCCCh-hhHH
Confidence 5534444432 22 345567888873 23 67899999998765 9999999888 57999999998776 5789
Q ss_pred HHHHHHHHHhc
Q 006689 572 LFLGLIAAACG 582 (635)
Q Consensus 572 LF~~Fv~aa~~ 582 (635)
+|++|+.++++
T Consensus 176 i~~~f~~~~~~ 186 (188)
T TIGR00888 176 LLENFVYDVCG 186 (188)
T ss_pred HHHHHHHHhhC
Confidence 99999996544
No 26
>CHL00101 trpG anthranilate synthase component 2
Probab=99.92 E-value=6.6e-24 Score=208.76 Aligned_cols=187 Identities=20% Similarity=0.271 Sum_probs=128.5
Q ss_pred EEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHH-hccCCCEEEECCCCCCCcch
Q 006689 334 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK-LLKGADGILVPGGFGNRGVQ 412 (635)
Q Consensus 334 IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~-~L~~~DGIllPGGfG~rg~e 412 (635)
|.+++.|.++. .++.+.|+..|+++.+. +..... +.+ ...++|||||+||||++...
T Consensus 2 iliid~~dsft---~~l~~~l~~~g~~~~v~------~~~~~~-------------~~~~~~~~~dgiiisgGpg~~~~~ 59 (190)
T CHL00101 2 ILIIDNYDSFT---YNLVQSLGELNSDVLVC------RNDEID-------------LSKIKNLNIRHIIISPGPGHPRDS 59 (190)
T ss_pred EEEEECCCchH---HHHHHHHHhcCCCEEEE------ECCCCC-------------HHHHhhCCCCEEEECCCCCChHHC
Confidence 77886555332 46889999998776542 222111 111 12579999999999997543
Q ss_pred hHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEEec
Q 006689 413 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQI 492 (635)
Q Consensus 413 g~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~ 492 (635)
+....+..+.+.++|+||||+|||+|+.++|++|.+.+. +..|++ ..+. ..
T Consensus 60 ~~~~~i~~~~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~-----------------------~~~g~~-----~~~~-~~ 110 (190)
T CHL00101 60 GISLDVISSYAPYIPILGVCLGHQSIGYLFGGKIIKAPK-----------------------PMHGKT-----SKIY-HN 110 (190)
T ss_pred cchHHHHHHhcCCCcEEEEchhHHHHHHHhCCEEEECCC-----------------------cccCce-----eeEe-eC
Confidence 433344445678999999999999999999999965331 122332 1222 22
Q ss_pred CCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHH
Q 006689 493 KDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPL 572 (635)
Q Consensus 493 ~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~pL 572 (635)
.+.++..+. .. ...++.|+|.|++.. + +.+++++|+++++. +|+++++++||++|+|||||.+..+ ....+
T Consensus 111 ~~~l~~~~~-~~--~~v~~~H~~~v~~~~---l-p~~~~vla~s~~~~-v~a~~~~~~~~i~gvQfHPE~~~~~-~g~~l 181 (190)
T CHL00101 111 HDDLFQGLP-NP--FTATRYHSLIIDPLN---L-PSPLEITAWTEDGL-IMACRHKKYKMLRGIQFHPESLLTT-HGQQI 181 (190)
T ss_pred CcHhhccCC-Cc--eEEEcchhheeeccc---C-CCceEEEEEcCCCc-EEEEEeCCCCCEEEEEeCCccCCCh-hHHHH
Confidence 224454443 22 345678999986532 2 57899999999887 9999999999888999999987554 57889
Q ss_pred HHHHHHHH
Q 006689 573 FLGLIAAA 580 (635)
Q Consensus 573 F~~Fv~aa 580 (635)
|++|++.+
T Consensus 182 ~~nf~~~~ 189 (190)
T CHL00101 182 LRNFLSLS 189 (190)
T ss_pred HHHHHhhh
Confidence 99998753
No 27
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.91 E-value=1.5e-23 Score=206.04 Aligned_cols=186 Identities=17% Similarity=0.247 Sum_probs=131.5
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcc
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 411 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~ 411 (635)
+||.+|+.|.++ +| ++.++|+.+|+++.+. .. .+.+ .+.++++|||||+||+|.+..
T Consensus 2 ~~iliid~~dsf--~~-~i~~~l~~~g~~~~v~----~~--~~~~--------------~~~l~~~d~iIi~gGp~~~~~ 58 (190)
T PRK06895 2 TKLLIINNHDSF--TF-NLVDLIRKLGVPMQVV----NV--EDLD--------------LDEVENFSHILISPGPDVPRA 58 (190)
T ss_pred cEEEEEeCCCch--HH-HHHHHHHHcCCcEEEE----EC--CccC--------------hhHhccCCEEEECCCCCChHH
Confidence 589999877765 44 4999999999887653 11 1111 134678999999999997643
Q ss_pred -hhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEE
Q 006689 412 -QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 490 (635)
Q Consensus 412 -eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l 490 (635)
....+.++. .+.++|+||||||||+|+.++|++|.+++. ..| |+ ..++..
T Consensus 59 ~~~~~~~i~~-~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~----------------------~~~-g~-----~~~v~~ 109 (190)
T PRK06895 59 YPQLFAMLER-YHQHKSILGVCLGHQTLCEFFGGELYNLNN----------------------VRH-GQ-----QRPLKV 109 (190)
T ss_pred hhHHHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCeEeecCC----------------------Ccc-Cc-----eEEEEE
Confidence 234455554 456899999999999999999999854320 123 22 234444
Q ss_pred ecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCch
Q 006689 491 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 570 (635)
Q Consensus 491 ~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~ 570 (635)
.+++.++..+. .+ ...++.|+|.+.+..+ +.++.+++.++++. +++++++++| ++|+|||||..+.+ .+.
T Consensus 110 ~~~~~l~~~~~-~~--~~v~~~Hs~~v~~~~l----p~~l~~~a~~~~~~-i~a~~~~~~p-i~GvQFHPE~~~~~-~g~ 179 (190)
T PRK06895 110 RSNSPLFDGLP-EE--FNIGLYHSWAVSEENF----PTPLEITAVCDENV-VMAMQHKTLP-IYGVQFHPESYISE-FGE 179 (190)
T ss_pred CCCChhhhcCC-Cc--eEEEcchhheeccccc----CCCeEEEEECCCCc-EEEEEECCCC-EEEEEeCCCcCCCc-chH
Confidence 44435555543 23 3456789999875432 46788999887776 9999999999 57999999997777 467
Q ss_pred HHHHHHHHH
Q 006689 571 PLFLGLIAA 579 (635)
Q Consensus 571 pLF~~Fv~a 579 (635)
.++++|++.
T Consensus 180 ~il~nf~~~ 188 (190)
T PRK06895 180 QILRNWLAI 188 (190)
T ss_pred HHHHHHHhh
Confidence 899999864
No 28
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.91 E-value=1.1e-23 Score=206.90 Aligned_cols=185 Identities=17% Similarity=0.258 Sum_probs=130.7
Q ss_pred EEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcch-
Q 006689 334 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ- 412 (635)
Q Consensus 334 IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~e- 412 (635)
|.+|+.|.++. .++++.|+..|+++.+. ..+..+++ .+ +. .++|||+|+||||++...
T Consensus 2 il~id~~dsft---~~~~~~l~~~g~~v~v~----~~~~~~~~---------~~----~~-~~~d~iilsgGpg~p~~~~ 60 (188)
T TIGR00566 2 VLMIDNYDSFT---YNLVQYFCELGAEVVVK----RNDSLTLQ---------EI----EA-LLPLLIVISPGPCTPNEAG 60 (188)
T ss_pred EEEEECCcCHH---HHHHHHHHHcCCceEEE----ECCCCCHH---------HH----Hh-cCCCEEEEcCCCCChhhcc
Confidence 78887666442 47888999988776542 11111110 00 11 268999999999998532
Q ss_pred hHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEEec
Q 006689 413 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQI 492 (635)
Q Consensus 413 g~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~ 492 (635)
...+.++++ ..++|+||||+|||+++.++|++|.+.+. ...|+ .+++....
T Consensus 61 ~~~~~i~~~-~~~~PvLGIC~G~Qll~~~~GG~v~~~~~-----------------------~~~g~-----~~~v~~~~ 111 (188)
T TIGR00566 61 ISLEAIRHF-AGKLPILGVCLGHQAMGQAFGGDVVRANT-----------------------VMHGK-----TSEIEHNG 111 (188)
T ss_pred hhHHHHHHh-ccCCCEEEECHHHHHHHHHcCCEEeeCCC-----------------------ccccc-----eEEEEECC
Confidence 236677777 57899999999999999999999865321 11233 34555544
Q ss_pred CCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHH
Q 006689 493 KDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPL 572 (635)
Q Consensus 493 ~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~pL 572 (635)
. +++.++++ + ....+.|+|.|+++.+ +++++++|+++++..+++++++++| ++|+|||||....+ .+..+
T Consensus 112 ~-~~~~~l~~-~--~~v~~~H~~~v~~~~l----~~~~~v~a~s~~~~~v~a~~~~~~~-i~gvQfHPE~~~t~-~G~~i 181 (188)
T TIGR00566 112 A-GIFRGLFN-P--LTATRYHSLVVEPETL----PTCFPVTAWEEENIEIMAIRHRDLP-LEGVQFHPESILSE-QGHQL 181 (188)
T ss_pred C-ccccCCCC-C--cEEEEcccceEecccC----CCceEEEEEcCCCCEEEEEEeCCCC-EEEEEeCCCccCCc-ccHHH
Confidence 3 56666663 3 3345778999875443 5689999999765359999999999 57999999997765 68899
Q ss_pred HHHHHH
Q 006689 573 FLGLIA 578 (635)
Q Consensus 573 F~~Fv~ 578 (635)
|++|++
T Consensus 182 l~nfl~ 187 (188)
T TIGR00566 182 LANFLH 187 (188)
T ss_pred HHHHHh
Confidence 999985
No 29
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.91 E-value=1.5e-23 Score=207.47 Aligned_cols=188 Identities=20% Similarity=0.252 Sum_probs=130.0
Q ss_pred EEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcchh
Q 006689 334 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQG 413 (635)
Q Consensus 334 IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~eg 413 (635)
|.+|+.|.++. .++.+.|+..|+++.+. ..+... ++. . ...++||||++||||++...+
T Consensus 2 il~idn~dsft---~nl~~~l~~~g~~v~v~------~~~~~~-------~~~---~--~~~~~d~iIlsgGP~~p~~~~ 60 (195)
T PRK07649 2 ILMIDNYDSFT---FNLVQFLGELGQELVVK------RNDEVT-------ISD---I--ENMKPDFLMISPGPCSPNEAG 60 (195)
T ss_pred EEEEeCCCccH---HHHHHHHHHCCCcEEEE------eCCCCC-------HHH---H--hhCCCCEEEECCCCCChHhCC
Confidence 78888777553 46889999998876653 221111 000 0 124789999999999985433
Q ss_pred -HHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEEec
Q 006689 414 -KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQI 492 (635)
Q Consensus 414 -~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~ 492 (635)
....++. .+.++|+||||||||+|+.++|++|.+.+. .+.|++ .++.. .
T Consensus 61 ~~~~~i~~-~~~~~PvLGIClG~Qlla~~lGg~V~~~~~-----------------------~~~G~~-----~~i~~-~ 110 (195)
T PRK07649 61 ISMEVIRY-FAGKIPIFGVCLGHQSIAQVFGGEVVRAER-----------------------LMHGKT-----SLMHH-D 110 (195)
T ss_pred CchHHHHH-hcCCCCEEEEcHHHHHHHHHcCCEEeeCCC-----------------------cccCCe-----EEEEE-C
Confidence 3344443 346899999999999999999999965331 122432 23332 3
Q ss_pred CCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHH
Q 006689 493 KDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPL 572 (635)
Q Consensus 493 ~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~pL 572 (635)
+++++.++.. .. ...+.|++.|.+.. + +.|++++|+++++. +++++++++| ++|+|||||...++ ++..+
T Consensus 111 ~~~lf~~~~~-~~--~v~~~H~~~v~~~~---l-p~~~~~~a~s~~~~-v~a~~~~~~~-i~gvQFHPE~~~t~-~g~~i 180 (195)
T PRK07649 111 GKTIFSDIPN-PF--TATRYHSLIVKKET---L-PDCLEVTSWTEEGE-IMAIRHKTLP-IEGVQFHPESIMTS-HGKEL 180 (195)
T ss_pred CChhhcCCCC-CC--EEEEechheEeccc---C-CCCeEEEEEcCCCc-EEEEEECCCC-EEEEEECCCCCCCc-cHHHH
Confidence 3356666642 33 34567888875332 2 67899999998887 9999999999 57999999987665 57899
Q ss_pred HHHHHHHHhc
Q 006689 573 FLGLIAAACG 582 (635)
Q Consensus 573 F~~Fv~aa~~ 582 (635)
|++|++....
T Consensus 181 l~nfl~~~~~ 190 (195)
T PRK07649 181 LQNFIRKYSP 190 (195)
T ss_pred HHHHHHHhHh
Confidence 9999987754
No 30
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.90 E-value=3.6e-23 Score=203.25 Aligned_cols=184 Identities=16% Similarity=0.262 Sum_probs=121.2
Q ss_pred EEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHh-ccCCCEEEECCCCCCCcch
Q 006689 334 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRGVQ 412 (635)
Q Consensus 334 IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~-L~~~DGIllPGGfG~rg~e 412 (635)
|.+|+.|+++. .++++.|+..|+++.+. ...... +.+. ..++||||++||||++...
T Consensus 2 il~id~~dsf~---~nl~~~l~~~~~~~~v~------~~~~~~-------------~~~~~~~~~~~iilsgGP~~~~~~ 59 (191)
T PRK06774 2 LLLIDNYDSFT---YNLYQYFCELGTEVMVK------RNDELQ-------------LTDIEQLAPSHLVISPGPCTPNEA 59 (191)
T ss_pred EEEEECCCchH---HHHHHHHHHCCCcEEEE------eCCCCC-------------HHHHHhcCCCeEEEcCCCCChHhC
Confidence 78887676542 46888999888877652 222111 0111 1378999999999998543
Q ss_pred h-HHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEEe
Q 006689 413 G-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQ 491 (635)
Q Consensus 413 g-~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~ 491 (635)
+ ....++. .+.++|+||||+|||+|+.++|++|...+. . ..|+ ..+...
T Consensus 60 ~~~~~~i~~-~~~~~PiLGIC~G~Qlla~~~GG~v~~~~~---~--------------------~~G~------~~~~~~ 109 (191)
T PRK06774 60 GISLAVIRH-FADKLPILGVCLGHQALGQAFGARVVRARQ---V--------------------MHGK------TSAICH 109 (191)
T ss_pred CCchHHHHH-hcCCCCEEEECHHHHHHHHHhCCEEEeCCc---c--------------------eecc------eEEEEe
Confidence 3 2344443 467899999999999999999999864320 1 1133 222222
Q ss_pred cCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCC---eEEEEEeCCCCcEEEEcccCCCcCCCCC
Q 006689 492 IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ---RMEIVELPNHPYFIGVQFHPEYKSRPGK 568 (635)
Q Consensus 492 ~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~---~vE~iE~~~~p~fvGVQFHPE~ss~p~~ 568 (635)
..++++..+. ... ..++.|+|.+++..+ +.++.++|+++++. .++++++++.| ++|+|||||+.+.+ +
T Consensus 110 ~~~~lf~~l~-~~~--~v~~~Hs~~v~~~~l----p~~~~vlA~s~~d~~~~~i~~~~~~~~~-i~GvQfHPE~~~~~-~ 180 (191)
T PRK06774 110 SGQGVFRGLN-QPL--TVTRYHSLVIAADSL----PGCFELTAWSERGGEMDEIMGIRHRTLP-LEGVQFHPESILSE-Q 180 (191)
T ss_pred cCchhhcCCC-CCc--EEEEeCcceeeccCC----CCCeEEEEEeCCCCCcceEEEEEeCCCC-EEEEEECCCcCCCc-c
Confidence 3324555543 233 345678888864322 57899999987442 25567777776 57999999997776 5
Q ss_pred chHHHHHHHH
Q 006689 569 PSPLFLGLIA 578 (635)
Q Consensus 569 p~pLF~~Fv~ 578 (635)
+..+|++|++
T Consensus 181 G~~i~~nf~~ 190 (191)
T PRK06774 181 GHQLLDNFLK 190 (191)
T ss_pred HHHHHHHHhh
Confidence 7899999985
No 31
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.90 E-value=1e-22 Score=209.24 Aligned_cols=169 Identities=25% Similarity=0.350 Sum_probs=117.3
Q ss_pred HhccCCCEEEECCCCCCC-----------cc------hhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCC
Q 006689 392 KLLKGADGILVPGGFGNR-----------GV------QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANS 454 (635)
Q Consensus 392 ~~L~~~DGIllPGGfG~r-----------g~------eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S 454 (635)
+.++.+||||++||+.+- .. .-.++++++|.++++|+||||+|||+|++++|+++.. +..+
T Consensus 57 ~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva~GGtl~~--~~~~ 134 (254)
T PRK11366 57 QLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVATGGSLHR--KLCE 134 (254)
T ss_pred HHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHhCCeEee--cccc
Confidence 456779999999985421 11 2357889999999999999999999999999999963 1100
Q ss_pred -CccCCCCCCCeeeeCCCCC-cCcCCCccccCceeEEEecCCchhhhccCC--ceeEEEEeeeeeeeChhhhhhhcCCCe
Q 006689 455 -TEFDPNTKNPCVIFMPEGS-KTHMGGTMRLGSRRTYFQIKDCKSAKLYGN--RTFIDERHRHRYEVNPDMIARLENAGL 530 (635)
Q Consensus 455 -~Ef~~~~~~pvi~~mpe~~-~~h~GgtmrLG~~~v~l~~~~sll~~iyg~--~~~I~erHrHrYeVnp~~v~~Le~~Gl 530 (635)
.+.......+ +.. ..+. .+.+.+.+.++ +++..++++ ...+..+| . +.++.+ +.|+
T Consensus 135 ~~~~~~h~~~~------~~~~~~~~-----~~~h~v~~~~~-s~l~~i~~~~~~~~Vns~H--~-----q~V~~l-~~gl 194 (254)
T PRK11366 135 QPELLEHREDP------ELPVEQQY-----APSHEVQVEEG-GLLSALLPECSNFWVNSLH--G-----QGAKVV-SPRL 194 (254)
T ss_pred cccccccccCC------cccccccc-----CCceEEEECCC-CcHHHhcCCCceEEeehHH--H-----HHHhhc-ccce
Confidence 0000000000 000 0011 12477777776 788888742 22344444 2 556666 7899
Q ss_pred EEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCc-hHHHHHHHHHHhcc
Q 006689 531 SFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKP-SPLFLGLIAAACGQ 583 (635)
Q Consensus 531 ~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p-~pLF~~Fv~aa~~~ 583 (635)
+++|+++||. +|++|++++||++|||||||+...+... ..||++|+++|...
T Consensus 195 ~v~A~s~dg~-ieAie~~~~~~~~GVQwHPE~~~~~~~~~~~lf~~fv~~~~~~ 247 (254)
T PRK11366 195 RVEARSPDGL-VEAVSVINHPFALGVQWHPEWNSSEYALSRILFEGFITACQHH 247 (254)
T ss_pred EEEEEcCCCc-EEEEEeCCCCCEEEEEeCCCcCCCCCchHHHHHHHHHHHHHHH
Confidence 9999999997 9999999999989999999998765433 57999999998653
No 32
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.90 E-value=9.8e-23 Score=198.60 Aligned_cols=183 Identities=21% Similarity=0.261 Sum_probs=125.5
Q ss_pred EEEEeccCCCcchHH-HHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcch
Q 006689 334 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 412 (635)
Q Consensus 334 IalVGkY~~l~DaY~-SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~e 412 (635)
|.+++.|+ .|. .+.+.|+.+|+++.+. .| +... + ....+.++||||++||+|++...
T Consensus 1 il~~~~~~----~~~~~~~~~l~~~G~~~~~~---~~-~~~~-~-------------~~~~~~~~dgvil~gG~~~~~~~ 58 (184)
T cd01743 1 ILLIDNYD----SFTYNLVQYLRELGAEVVVV---RN-DEIT-L-------------EELELLNPDAIVISPGPGHPEDA 58 (184)
T ss_pred CEEEeCCC----ccHHHHHHHHHHcCCceEEE---eC-CCCC-H-------------HHHhhcCCCEEEECCCCCCcccc
Confidence 34665444 444 4678888889876652 22 1111 0 00235789999999999987544
Q ss_pred hHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEEec
Q 006689 413 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQI 492 (635)
Q Consensus 413 g~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~ 492 (635)
.....++.+.++++|+||||+|||+|+.++|++|...+. +..|+ .+++.+.+
T Consensus 59 ~~~~~i~~~~~~~~PvlGIC~G~Qlla~~~Gg~v~~~~~-----------------------~~~g~-----~~~v~~~~ 110 (184)
T cd01743 59 GISLEIIRALAGKVPILGVCLGHQAIAEAFGGKVVRAPE-----------------------PMHGK-----TSEIHHDG 110 (184)
T ss_pred hhHHHHHHHHhcCCCEEEECHhHHHHHHHhCCEEEeCCC-----------------------CCcCc-----eeEEEECC
Confidence 445555555577899999999999999999999854220 12233 34555544
Q ss_pred CCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHH
Q 006689 493 KDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPL 572 (635)
Q Consensus 493 ~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~pL 572 (635)
+ +++..+. +. ....+.|+|.|+.... +.+++++|.++++. +++++++++| ++|+|||||+.+.+. ...|
T Consensus 111 ~-~~~~~~~-~~--~~~~~~H~~~v~~~~~----~~~~~~la~~~~~~-v~a~~~~~~~-i~gvQfHPE~~~~~~-g~~l 179 (184)
T cd01743 111 S-GLFKGLP-QP--FTVGRYHSLVVDPDPL----PDLLEVTASTEDGV-IMALRHRDLP-IYGVQFHPESILTEY-GLRL 179 (184)
T ss_pred C-ccccCCC-CC--cEEEeCcEEEEecCCC----CceEEEEEeCCCCe-EEEEEeCCCC-EEEEeeCCCcCCCcc-hHHH
Confidence 3 5555553 22 3456889999864321 12488999998885 9999999999 479999999988875 8999
Q ss_pred HHHHH
Q 006689 573 FLGLI 577 (635)
Q Consensus 573 F~~Fv 577 (635)
|++|+
T Consensus 180 ~~~f~ 184 (184)
T cd01743 180 LENFL 184 (184)
T ss_pred HHhhC
Confidence 99994
No 33
>PRK00758 GMP synthase subunit A; Validated
Probab=99.90 E-value=7.9e-23 Score=199.44 Aligned_cols=181 Identities=24% Similarity=0.318 Sum_probs=123.8
Q ss_pred EEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCC-CEEEECCCCCCCcch
Q 006689 334 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGA-DGILVPGGFGNRGVQ 412 (635)
Q Consensus 334 IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~-DGIllPGGfG~rg~e 412 (635)
|+|++ |+.. .-.++.++|+.+|+++.+ ++.+. ++ +.+.+. ||||+|||+....
T Consensus 2 i~iid-~~~~--~~~~i~~~l~~~g~~~~~------~~~~~--------~~-------~~l~~~~dgivi~Gg~~~~~-- 55 (184)
T PRK00758 2 IVVVD-NGGQ--YNHLIHRTLRYLGVDAKI------IPNTT--------PV-------EEIKAFEDGLILSGGPDIER-- 55 (184)
T ss_pred EEEEE-CCCc--hHHHHHHHHHHcCCcEEE------EECCC--------CH-------HHHhhcCCEEEECCCCChhh--
Confidence 78884 5422 335788899999986543 22111 11 235566 9999999983221
Q ss_pred hHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEEec
Q 006689 413 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQI 492 (635)
Q Consensus 413 g~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~ 492 (635)
.....+++++.++|+||||+|||+|+.++|++|...+. ++. |..++.+.+
T Consensus 56 -~~~~~~~l~~~~~PilGIC~G~Q~L~~a~Gg~v~~~~~-----------------------~~~------g~~~i~~~~ 105 (184)
T PRK00758 56 -AGNCPEYLKELDVPILGICLGHQLIAKAFGGEVGRGEY-----------------------GEY------ALVEVEILD 105 (184)
T ss_pred -ccccHHHHHhCCCCEEEEeHHHHHHHHhcCcEEecCCC-----------------------cee------eeEEEEEcC
Confidence 12233455567899999999999999999998854220 122 234555555
Q ss_pred CCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHH
Q 006689 493 KDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPL 572 (635)
Q Consensus 493 ~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~pL 572 (635)
.+.++..+. .. ...++.|+|.|. .+ +.+++++|+++++. +++++.+++| ++|+|||||++.++ +...|
T Consensus 106 ~~~l~~~~~-~~--~~~~~~H~~~v~-----~l-~~~~~~la~~~~~~-v~a~~~~~~~-~~g~QfHPE~~~~~-~g~~l 173 (184)
T PRK00758 106 EDDILKGLP-PE--IRVWASHADEVK-----EL-PDGFEILARSDICE-VEAMKHKEKP-IYGVQFHPEVAHTE-YGEEI 173 (184)
T ss_pred CChhhhCCC-CC--cEEEeehhhhhh-----hC-CCCCEEEEECCCCC-EEEEEECCCC-EEEEEcCCccCCCc-hHHHH
Confidence 445565543 23 334567887663 33 67899999999987 9999999888 57999999998774 67899
Q ss_pred HHHHHHHHhc
Q 006689 573 FLGLIAAACG 582 (635)
Q Consensus 573 F~~Fv~aa~~ 582 (635)
|++|++.+..
T Consensus 174 ~~~f~~~~~~ 183 (184)
T PRK00758 174 FKNFLEICGK 183 (184)
T ss_pred HHHHHHHHcc
Confidence 9999987643
No 34
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.90 E-value=1.3e-22 Score=203.62 Aligned_cols=191 Identities=20% Similarity=0.275 Sum_probs=132.8
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcc
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 411 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~ 411 (635)
++|.+++.|.++. .++.+.|+..|+.+.+. ..+...++ ...+.+.++|||||+||+|++..
T Consensus 1 ~~ilv~d~~~~~~---~~~~~~l~~~G~~~~~~----~~~~~~~~------------~~~~~~~~~dgliisGGp~~~~~ 61 (214)
T PRK07765 1 MRILVVDNYDSFV---FNLVQYLGQLGVEAEVW----RNDDPRLA------------DEAAVAAQFDGVLLSPGPGTPER 61 (214)
T ss_pred CeEEEEECCCcHH---HHHHHHHHHcCCcEEEE----ECCCcCHH------------HHHHhhcCCCEEEECCCCCChhh
Confidence 4788887665332 25678888888876542 22211110 01133568999999999998753
Q ss_pred -hhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEE
Q 006689 412 -QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 490 (635)
Q Consensus 412 -eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l 490 (635)
...+..++++.++++|+||||+|||+|+.++|++|.+.+. +..|+ .+++.+
T Consensus 62 ~~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a~GG~v~~~~~-----------------------~~~g~-----~~~v~~ 113 (214)
T PRK07765 62 AGASIDMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRAPE-----------------------LLHGK-----TSSVHH 113 (214)
T ss_pred cchHHHHHHHHHhCCCCEEEEccCHHHHHHHhCCEEeeCCC-----------------------CccCc-----eeEEEE
Confidence 3456889999999999999999999999999999965220 11233 234444
Q ss_pred ecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCch
Q 006689 491 QIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPS 570 (635)
Q Consensus 491 ~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~ 570 (635)
... +++..+. +. ...++.|+|.|.+..+ ++++.++|+++++. +|++++++++ ++|+|||||..... ++.
T Consensus 114 ~~~-~~~~~~~-~~--~~v~~~H~~~v~~~~l----p~~~~vla~s~~~~-vqa~~~~~~~-i~gvQfHPE~~~t~-~g~ 182 (214)
T PRK07765 114 TGV-GVLAGLP-DP--FTATRYHSLTILPETL----PAELEVTARTDSGV-IMAVRHRELP-IHGVQFHPESVLTE-GGH 182 (214)
T ss_pred CCC-ccccCCC-Cc--cEEEecchheEecccC----CCceEEEEEcCCCc-EEEEEeCCCC-EEEEeeCCCcccCc-chH
Confidence 433 4555443 22 3356778998875433 57899999999887 9999999999 67999999986443 466
Q ss_pred HHHHHHHHHH
Q 006689 571 PLFLGLIAAA 580 (635)
Q Consensus 571 pLF~~Fv~aa 580 (635)
.++.+|+..|
T Consensus 183 ~~l~~f~~~~ 192 (214)
T PRK07765 183 RMLANWLTVC 192 (214)
T ss_pred HHHHHHHHHh
Confidence 7888998654
No 35
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.90 E-value=7.7e-23 Score=198.01 Aligned_cols=181 Identities=20% Similarity=0.209 Sum_probs=124.9
Q ss_pred EEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcchh
Q 006689 334 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQG 413 (635)
Q Consensus 334 IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~eg 413 (635)
|+++ ||++. .-.++.++|+.+|+.+.+. +.+.. .+ ...+.++||||+|||+++...+.
T Consensus 1 i~~i-D~g~~--~~~~~~~~l~~~G~~~~~~----~~~~~-~~--------------~~~~~~~dgvIl~Gg~~~~~~~~ 58 (181)
T cd01742 1 ILIL-DFGSQ--YTHLIARRVRELGVYSEIL----PNTTP-LE--------------EIKLKNPKGIILSGGPSSVYEED 58 (181)
T ss_pred CEEE-ECCCc--hHHHHHHHHHhcCceEEEe----cCCCC-hh--------------hhcccCCCEEEECCCcccccccc
Confidence 5677 57643 2356889999999765442 22211 00 12467899999999988654332
Q ss_pred HHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEEecC
Q 006689 414 KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK 493 (635)
Q Consensus 414 ~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~ 493 (635)
.....+++.+.++|+||||+|||+|+.++|++|.+.+. +++|+ .++.+.++
T Consensus 59 ~~~~~~~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~-----------------------~~~G~------~~v~~~~~ 109 (181)
T cd01742 59 APRVDPEIFELGVPVLGICYGMQLIAKALGGKVERGDK-----------------------REYGK------AEIEIDDS 109 (181)
T ss_pred cchhhHHHHhcCCCEEEEcHHHHHHHHhcCCeEEeCCC-----------------------CcceE------EEEEecCC
Confidence 34456777788999999999999999999998854220 23343 34444444
Q ss_pred CchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHH
Q 006689 494 DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLF 573 (635)
Q Consensus 494 ~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~pLF 573 (635)
+.++..+. .. ...++.|+|+|. .+ +.+++++|.++++. +++++.++.+ ++|+|||||++..+ ++..+|
T Consensus 110 ~~l~~~~~-~~--~~~~~~H~~~v~-----~l-~~~~~~la~~~~~~-i~a~~~~~~~-~~g~QfHPE~~~~~-~g~~ll 177 (181)
T cd01742 110 SPLFEGLP-DE--QTVWMSHGDEVV-----KL-PEGFKVIASSDNCP-VAAIANEEKK-IYGVQFHPEVTHTE-KGKEIL 177 (181)
T ss_pred ChhhcCCC-Cc--eEEEcchhhhhh-----hc-CCCcEEEEeCCCCC-EEEEEeCCCc-EEEEEcCCccccCc-ChHHHH
Confidence 34454443 22 344567887762 33 67899999998876 9999999877 57999999999875 678999
Q ss_pred HHHH
Q 006689 574 LGLI 577 (635)
Q Consensus 574 ~~Fv 577 (635)
++|+
T Consensus 178 ~~f~ 181 (181)
T cd01742 178 KNFL 181 (181)
T ss_pred HhhC
Confidence 9884
No 36
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.89 E-value=5.7e-22 Score=195.38 Aligned_cols=186 Identities=19% Similarity=0.261 Sum_probs=125.2
Q ss_pred EEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcchh
Q 006689 334 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQG 413 (635)
Q Consensus 334 IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~eg 413 (635)
|.+|+.|.++. .++++.|+..|+.+.+. ..+..++++ . ...++|+|+++|||+++...+
T Consensus 2 il~id~~dsft---~~~~~~l~~~g~~~~~~----~~~~~~~~~-------------~-~~~~~~~iilsgGp~~~~~~~ 60 (193)
T PRK08857 2 LLMIDNYDSFT---YNLYQYFCELGAQVKVV----RNDEIDIDG-------------I-EALNPTHLVISPGPCTPNEAG 60 (193)
T ss_pred EEEEECCCCcH---HHHHHHHHHCCCcEEEE----ECCCCCHHH-------------H-hhCCCCEEEEeCCCCChHHCc
Confidence 78998777653 46888999998876552 111111100 0 123589999999999975332
Q ss_pred -HHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEEec
Q 006689 414 -KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQI 492 (635)
Q Consensus 414 -~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~ 492 (635)
....++. .+.++|+||||+|||+|+.++|++|.+.+. +..|++ +++...
T Consensus 61 ~~~~~i~~-~~~~~PiLGIClG~Qlia~a~Gg~v~~~~~-----------------------~~~G~~-----~~~~~~- 110 (193)
T PRK08857 61 ISLQAIEH-FAGKLPILGVCLGHQAIAQVFGGQVVRARQ-----------------------VMHGKT-----SPIRHT- 110 (193)
T ss_pred chHHHHHH-hcCCCCEEEEcHHHHHHHHHhCCEEEeCCC-----------------------ceeCce-----EEEEEC-
Confidence 3445554 467899999999999999999999865321 112331 233322
Q ss_pred CCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeC--CCC--eEEEEEeCCCCcEEEEcccCCCcCCCCC
Q 006689 493 KDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDE--TSQ--RMEIVELPNHPYFIGVQFHPEYKSRPGK 568 (635)
Q Consensus 493 ~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~--dg~--~vE~iE~~~~p~fvGVQFHPE~ss~p~~ 568 (635)
+++++..+. ... ...+.|++.|.+.. + +.+++++|+++ ++. .+++++++++|+ +|+|||||....+ .
T Consensus 111 ~~~l~~~~~-~~~--~v~~~H~~~v~~~~---l-p~~~~v~a~s~~~~~~~~~i~~~~~~~~pi-~gvQfHPE~~~t~-~ 181 (193)
T PRK08857 111 GRSVFKGLN-NPL--TVTRYHSLVVKNDT---L-PECFELTAWTELEDGSMDEIMGFQHKTLPI-EAVQFHPESIKTE-Q 181 (193)
T ss_pred CCcccccCC-Ccc--EEEEccEEEEEcCC---C-CCCeEEEEEecCcCCCcceEEEEEeCCCCE-EEEeeCCCcCCCc-c
Confidence 224555543 233 34567888885432 3 67899999886 432 588999999985 6999999988665 4
Q ss_pred chHHHHHHHHH
Q 006689 569 PSPLFLGLIAA 579 (635)
Q Consensus 569 p~pLF~~Fv~a 579 (635)
+..+|++|++.
T Consensus 182 g~~i~~nFl~~ 192 (193)
T PRK08857 182 GHQLLANFLAR 192 (193)
T ss_pred hHHHHHHHHhh
Confidence 89999999863
No 37
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.88 E-value=1e-21 Score=196.43 Aligned_cols=201 Identities=17% Similarity=0.208 Sum_probs=123.9
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHh-ccCCCEEEECCCCCCCc
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGNRG 410 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~-L~~~DGIllPGGfG~rg 410 (635)
.+|++++.|.+ ...|+.++|+..|+.+.+. .| +. .+ .+. ..++|||||+||||++.
T Consensus 2 ~~il~iD~~ds---f~~nl~~~l~~~g~~~~v~---~~-~~-~~---------------~~l~~~~~~~iIlsgGPg~~~ 58 (208)
T PRK05637 2 THVVLIDNHDS---FVYNLVDAFAVAGYKCTVF---RN-TV-PV---------------EEILAANPDLICLSPGPGHPR 58 (208)
T ss_pred CEEEEEECCcC---HHHHHHHHHHHCCCcEEEE---eC-CC-CH---------------HHHHhcCCCEEEEeCCCCCHH
Confidence 47999964443 2368999999999887663 11 10 01 011 24789999999999985
Q ss_pred chh-HHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCc-cccCceeE
Q 006689 411 VQG-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT-MRLGSRRT 488 (635)
Q Consensus 411 ~eg-~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~Ggt-mrLG~~~v 488 (635)
..+ +.+.++.+. .++|+||||+|||+|+.++|++|.... .+... ...+.+ .+.|.+ --++..++
T Consensus 59 d~~~~~~li~~~~-~~~PiLGIClG~Qlla~alGG~V~~~~----~~~G~---~~~i~~------~~~~~~~~l~~~~~~ 124 (208)
T PRK05637 59 DAGNMMALIDRTL-GQIPLLGICLGFQALLEHHGGKVEPCG----PVHGT---TDNMIL------TDAGVQSPVFAGLAT 124 (208)
T ss_pred HhhHHHHHHHHHh-CCCCEEEEcHHHHHHHHHcCCeeccCC----cccce---EEEeEE------CCCCCCCcccCCCCc
Confidence 433 345555443 479999999999999999999986321 11100 000000 011110 00111222
Q ss_pred EEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCC--CCeEEEEEeCCCCcEEEEcccCCCcCCC
Q 006689 489 YFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET--SQRMEIVELPNHPYFIGVQFHPEYKSRP 566 (635)
Q Consensus 489 ~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~d--g~~vE~iE~~~~p~fvGVQFHPE~ss~p 566 (635)
...++ ...+.|.+..++.+ |+++| ..+ +++++++|++++ +..+++++..+++ ++|+|||||...++
T Consensus 125 ~~~~~---~~~~~g~~~~V~~~--H~~~v-----~~l-p~~~~vlA~s~~~~~~v~~a~~~~~~~-~~GvQfHPE~~~T~ 192 (208)
T PRK05637 125 DVEPD---HPEIPGRKVPIARY--HSLGC-----VVA-PDGMESLGTCSSEIGPVIMAAETTDGK-AIGLQFHPESVLSP 192 (208)
T ss_pred ccccc---cccccCCceEEEEe--chhhh-----hcC-CCCeEEEEEecCCCCCEEEEEEECCCC-EEEEEeCCccCcCC
Confidence 21111 01222333445544 55544 344 789999999765 3457888998887 57999999988887
Q ss_pred CCchHHHHHHHHHHhc
Q 006689 567 GKPSPLFLGLIAAACG 582 (635)
Q Consensus 567 ~~p~pLF~~Fv~aa~~ 582 (635)
.+..+|.+|++....
T Consensus 193 -~G~~il~nfl~~~~~ 207 (208)
T PRK05637 193 -TGPIILSRCVEQLLA 207 (208)
T ss_pred -CHHHHHHHHHHHHhc
Confidence 689999999987653
No 38
>PLN02347 GMP synthetase
Probab=99.88 E-value=6.2e-22 Score=222.01 Aligned_cols=193 Identities=19% Similarity=0.206 Sum_probs=136.1
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhc--cCCCEEEECCCCCCCc
Q 006689 333 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNRG 410 (635)
Q Consensus 333 ~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIllPGGfG~rg 410 (635)
+|+++ ||++. .-.++.++|+..|+.+.+. .|- + + + +.+ .++||||+||||++..
T Consensus 12 ~IlII-D~G~~--~t~~I~r~lrelgv~~~v~---p~~-~-~---------~-------~~i~~~~~dgIILsGGP~sv~ 67 (536)
T PLN02347 12 VVLIL-DYGSQ--YTHLITRRVRELGVYSLLL---SGT-A-S---------L-------DRIASLNPRVVILSGGPHSVH 67 (536)
T ss_pred EEEEE-ECCCc--HHHHHHHHHHHCCCeEEEE---ECC-C-C---------H-------HHHhcCCCCEEEECCCCCccc
Confidence 79999 68743 2357889999999876542 121 1 1 1 222 2789999999998753
Q ss_pred ch---h-HHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCce
Q 006689 411 VQ---G-KILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSR 486 (635)
Q Consensus 411 ~e---g-~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~ 486 (635)
.. . ....++++.+.++|+||||+|||+|+.++|++|.... . ..+| ..
T Consensus 68 ~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~alGG~V~~~~---~--------------------~e~G------~~ 118 (536)
T PLN02347 68 VEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPGE---K--------------------QEYG------RM 118 (536)
T ss_pred ccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHHcCCEEEecC---C--------------------cccc------eE
Confidence 21 1 1234566667899999999999999999999985421 0 1123 45
Q ss_pred eEEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCC
Q 006689 487 RTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRP 566 (635)
Q Consensus 487 ~v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p 566 (635)
++.+..++.++..+.. ......++.|+|.|.. + +.+++++|+++++. +++++++++|+ +|+|||||++.++
T Consensus 119 ~v~i~~~~~Lf~~l~~-~~~~~v~~~Hsd~V~~-----l-P~g~~vlA~s~~~~-iaai~~~~~~i-~GvQFHPE~~~t~ 189 (536)
T PLN02347 119 EIRVVCGSQLFGDLPS-GETQTVWMSHGDEAVK-----L-PEGFEVVAKSVQGA-VVAIENRERRI-YGLQYHPEVTHSP 189 (536)
T ss_pred EEEEcCCChhhhcCCC-CceEEEEEEEEEEeee-----C-CCCCEEEEEeCCCc-EEEEEECCCCE-EEEEccCCCCccc
Confidence 5665555455555542 2123456789988742 3 67999999999987 89999999985 6999999998877
Q ss_pred CCchHHHHHHHHHHhcchhhhh
Q 006689 567 GKPSPLFLGLIAAACGQLDTLI 588 (635)
Q Consensus 567 ~~p~pLF~~Fv~aa~~~~~~~~ 588 (635)
.+..++++|+..++++...|.
T Consensus 190 -~G~~iL~NFl~~ic~~~~~~~ 210 (536)
T PLN02347 190 -KGMETLRHFLFDVCGVTADWK 210 (536)
T ss_pred -hHHHHHHHHHHHHhCcCCCcC
Confidence 478999999988877665554
No 39
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.88 E-value=9.6e-22 Score=227.94 Aligned_cols=200 Identities=20% Similarity=0.270 Sum_probs=137.2
Q ss_pred CccEEEEEeccCCCcchHHHHHHHHHHc-cccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCC
Q 006689 330 EPVRIAMVGKYTGLSDAYLSILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 408 (635)
Q Consensus 330 ~~v~IalVGkY~~l~DaY~SI~~AL~~a-g~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~ 408 (635)
..++|.+|+.|.++. .+++..|+.. +..+.+ .++..+..+. +.+..+..+|||||+||||+
T Consensus 4 ~~~~iL~ID~~DSft---~nl~~~l~~~~g~~~~v----~vv~~d~~~~-----------~~~~~l~~~D~VVIspGPG~ 65 (742)
T TIGR01823 4 QRLHVLFIDSYDSFT---YNVVRLLEQQTDISVHV----TTVHSDTFQD-----------QLLELLPLFDAIVVGPGPGN 65 (742)
T ss_pred CCceEEEEeCCcchH---HHHHHHHHHhcCCCcEE----EEEeCCCCch-----------hhhhhhcCCCEEEECCCCCC
Confidence 457999997665332 4677777775 333322 2344333211 01234678999999999999
Q ss_pred CcchhHHHHHHHHHHc----CCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccC
Q 006689 409 RGVQGKILAAKYAREH----RIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLG 484 (635)
Q Consensus 409 rg~eg~i~air~are~----~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG 484 (635)
+..+..+..++.+++. ++|+||||||||+|+.++|++|...+. ++.|+
T Consensus 66 p~~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~~~-----------------------~~hG~----- 117 (742)
T TIGR01823 66 PNNAQDMGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRLPT-----------------------PKHGQ----- 117 (742)
T ss_pred ccchhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhhcCCEEEECCC-----------------------CCcCe-----
Confidence 9766666677777765 499999999999999999999854321 22343
Q ss_pred ceeEEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcC
Q 006689 485 SRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKS 564 (635)
Q Consensus 485 ~~~v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss 564 (635)
.+.+..... .++..++. .. ..+.|+|.++++..+.+ .+.+++.++++..+|+++++++|+| |||||||+..
T Consensus 118 ~~~v~~~~~-~lf~gl~~--~~--v~~~Hs~~v~~~~~~~l---~~~~~a~~~~~~~i~ai~h~~~pi~-GVQFHPE~~~ 188 (742)
T TIGR01823 118 VYEMHTNDA-AIFCGLFS--VK--STRYHSLYANPEGIDTL---LPLCLTEDEEGIILMSAQTKKKPWF-GVQYHPESCC 188 (742)
T ss_pred EEEEEECCc-cccCCCCC--Cc--eeEEEEEEccCCCCCcc---eEEEEEEcCCCCeEEEEEEcCCceE-EEEeCcccCC
Confidence 233333222 45555542 22 34678999876554322 2566777776667999999999965 9999999988
Q ss_pred CCCCchHHHHHHHHHHhcch
Q 006689 565 RPGKPSPLFLGLIAAACGQL 584 (635)
Q Consensus 565 ~p~~p~pLF~~Fv~aa~~~~ 584 (635)
++..+.+||++|++++..+.
T Consensus 189 s~~g~~~Lf~nFl~~~~~~~ 208 (742)
T TIGR01823 189 SELGSGKLVSNFLKLAFINN 208 (742)
T ss_pred CCccHHHHHHHHHHHHHHhh
Confidence 88767999999999987654
No 40
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.87 E-value=1.7e-21 Score=224.57 Aligned_cols=194 Identities=21% Similarity=0.187 Sum_probs=140.6
Q ss_pred CccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 006689 330 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 409 (635)
Q Consensus 330 ~~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~r 409 (635)
...+|+|| ||+.. .-.++.++|+..|+++.+. .+...+++ -...++|||||+||+|++
T Consensus 515 ~~~~IlVI-D~gds--~~~~l~~~L~~~G~~v~vv---~~~~~~~~----------------~~~~~~DgLILsgGPGsp 572 (717)
T TIGR01815 515 EGRRILLV-DHEDS--FVHTLANYLRQTGASVTTL---RHSHAEAA----------------FDERRPDLVVLSPGPGRP 572 (717)
T ss_pred CCCEEEEE-ECCCh--hHHHHHHHHHHCCCeEEEE---ECCCChhh----------------hhhcCCCEEEEcCCCCCc
Confidence 45799999 56632 3468999999999877542 11111110 123579999999999998
Q ss_pred cchhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEE
Q 006689 410 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 489 (635)
Q Consensus 410 g~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~ 489 (635)
...+....++++.+.++|+||||||||+|+.++|++|..++ .+++|+ ..++.
T Consensus 573 ~d~~~~~~I~~~~~~~iPvLGICLG~QlLa~a~GG~V~~~~-----------------------~p~~G~-----~~~V~ 624 (717)
T TIGR01815 573 ADFDVAGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVLP-----------------------EPVHGK-----ASRIR 624 (717)
T ss_pred hhcccHHHHHHHHHCCCCEEEECHHHHHHhhhhCCEEEECC-----------------------CCeeCc-----ceEEE
Confidence 76666788898889999999999999999999999986543 145565 23444
Q ss_pred EecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCC--C
Q 006689 490 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRP--G 567 (635)
Q Consensus 490 l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p--~ 567 (635)
...+++++..+. ... ..++.|+|.+.... + +.++.++|.++++. +++++++++|+ +|+|||||..-.+ .
T Consensus 625 ~~~~~~Lf~~lp-~~~--~v~~~HS~~~~~~~---L-P~~~~vlA~s~d~~-v~Ai~~~~~~i-~GVQFHPEsi~T~sg~ 695 (717)
T TIGR01815 625 VLGPDALFAGLP-ERL--TVGRYHSLFARRDR---L-PAELTVTAESADGL-IMAIEHRRLPL-AAVQFHPESIMTLDGG 695 (717)
T ss_pred ECCCChhhhcCC-CCC--EEEEECCCCccccc---C-CCCeEEEEEeCCCc-EEEEEECCCCE-EEEEeCCeeCCccCch
Confidence 444435666653 233 34577888775433 3 67899999998887 99999999994 6999999985333 2
Q ss_pred CchHHHHHHHHHHhc
Q 006689 568 KPSPLFLGLIAAACG 582 (635)
Q Consensus 568 ~p~pLF~~Fv~aa~~ 582 (635)
.+..+|++|+..++.
T Consensus 696 ~G~~ilkNfl~~~~~ 710 (717)
T TIGR01815 696 AGLAMIGNVVDRLAA 710 (717)
T ss_pred hHHHHHHHHHHHHhh
Confidence 368999999988854
No 41
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.87 E-value=1.8e-21 Score=195.92 Aligned_cols=195 Identities=22% Similarity=0.342 Sum_probs=134.0
Q ss_pred cEEEEEeccCCCcchHHHHHHHHH-HccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCC-
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALL-HASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 409 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~-~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~r- 409 (635)
+||||+ .|... .+-.++.+||+ .+|+++.. .|... ..+.++|+|+||||++..
T Consensus 1 ~~v~Vl-~~~G~-n~~~d~~~a~~~~~G~~~~~----v~~~~-------------------~~l~~~D~lvipGG~~~~d 55 (219)
T PRK03619 1 MKVAVI-VFPGS-NCDRDMARALRDLLGAEPEY----VWHKE-------------------TDLDGVDAVVLPGGFSYGD 55 (219)
T ss_pred CEEEEE-ecCCc-ChHHHHHHHHHhcCCCeEEE----EecCc-------------------CCCCCCCEEEECCCCchhh
Confidence 479999 56543 24577899999 88876432 24321 135688999999997531
Q ss_pred --------cchhHHHHHHHHHHcCCCEEEEehhHHHHHHH--HhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCC
Q 006689 410 --------GVQGKILAAKYAREHRIPYLGICLGMQVAVIE--FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGG 479 (635)
Q Consensus 410 --------g~eg~i~air~are~~iP~LGICLGmQllaie--~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~Gg 479 (635)
.....+..++.+.++++|++|||.|+|+|+-+ +.+++.. ..+.+|
T Consensus 56 ~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l~~---n~~~~~---------------------- 110 (219)
T PRK03619 56 YLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGALTR---NASLKF---------------------- 110 (219)
T ss_pred hhccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeEEE---cCCCcE----------------------
Confidence 12446777888888999999999999999853 2222210 001111
Q ss_pred ccccCceeEEEecCCchhhhccC-Cce-eE-EEEeeeeeeeChhhhhhhcCCCeE---EEEEeCCCCeEEEEEeCC-CCc
Q 006689 480 TMRLGSRRTYFQIKDCKSAKLYG-NRT-FI-DERHRHRYEVNPDMIARLENAGLS---FTGKDETSQRMEIVELPN-HPY 552 (635)
Q Consensus 480 tmrLG~~~v~l~~~~sll~~iyg-~~~-~I-~erHrHrYeVnp~~v~~Le~~Gl~---~sa~s~dg~~vE~iE~~~-~p~ 552 (635)
.-+...+.+.+..+.+.+.++ +.. .+ +..|+|||++|+++++.+++.++. +++.+++|...++.++.+ ++|
T Consensus 111 --~~~~v~v~i~~~~~~~~~~~~~g~~~~~~~aH~~~r~~~~~~~~~~l~~~~~~~~~~~~~npngs~~~ia~i~~~~~~ 188 (219)
T PRK03619 111 --ICRDVHLRVENNDTPFTSGYEKGEVIRIPIAHGEGNYYADEETLKRLEGNGQVVFRYCDENPNGSVNDIAGIVNEKGN 188 (219)
T ss_pred --EEEEEEEEECCCCChhhcCCCCCCEEEEEEEcCcccEEECHHHHHHHHhCCcEEEEEcCCCCCCCHHHhcccCCCCCC
Confidence 001223344333345545442 221 12 456799999999999999999988 444568998788888888 899
Q ss_pred EEEEcccCCCcCCC----CCchHHHHHHHH
Q 006689 553 FIGVQFHPEYKSRP----GKPSPLFLGLIA 578 (635)
Q Consensus 553 fvGVQFHPE~ss~p----~~p~pLF~~Fv~ 578 (635)
++|+|||||+.++| .+++++|.+|++
T Consensus 189 ~~g~~~HPE~~~~~~~~~~~g~~lf~~~v~ 218 (219)
T PRK03619 189 VLGMMPHPERAVEPLLGSTDGLKLFESLLK 218 (219)
T ss_pred EEEEeCCCCccccCccCCCcCHHHHHHHhh
Confidence 99999999999988 889999999985
No 42
>PRK13566 anthranilate synthase; Provisional
Probab=99.87 E-value=3.7e-21 Score=222.00 Aligned_cols=193 Identities=18% Similarity=0.188 Sum_probs=139.8
Q ss_pred CccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 006689 330 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 409 (635)
Q Consensus 330 ~~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~r 409 (635)
...+|.+| ||... .-.++.+.|+..|+++.+. .+-.+.++ -...++|||||+||+|++
T Consensus 525 ~g~~IlvI-D~~ds--f~~~l~~~Lr~~G~~v~vv---~~~~~~~~----------------~~~~~~DgVVLsgGpgsp 582 (720)
T PRK13566 525 EGKRVLLV-DHEDS--FVHTLANYFRQTGAEVTTV---RYGFAEEM----------------LDRVNPDLVVLSPGPGRP 582 (720)
T ss_pred CCCEEEEE-ECCCc--hHHHHHHHHHHCCCEEEEE---ECCCChhH----------------hhhcCCCEEEECCCCCCh
Confidence 46799999 56632 3457889999999887552 11111100 113579999999999998
Q ss_pred cchhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEE
Q 006689 410 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 489 (635)
Q Consensus 410 g~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~ 489 (635)
...+....++++.++++|+||||+|||+|+.++|++|..++. ++.|+ .+++.
T Consensus 583 ~d~~~~~lI~~a~~~~iPILGIClG~QlLa~alGG~V~~~~~-----------------------~~~G~-----~~~V~ 634 (720)
T PRK13566 583 SDFDCKATIDAALARNLPIFGVCLGLQAIVEAFGGELGQLAY-----------------------PMHGK-----PSRIR 634 (720)
T ss_pred hhCCcHHHHHHHHHCCCcEEEEehhHHHHHHHcCCEEEECCC-----------------------CccCC-----ceEEE
Confidence 766678899999999999999999999999999999865431 23343 35566
Q ss_pred EecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCC--CC
Q 006689 490 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSR--PG 567 (635)
Q Consensus 490 l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~--p~ 567 (635)
+..++.++..+. .. +...+.|+|.+.... + +.+++++|.++++. ++++++++.| ++|||||||+.-. ..
T Consensus 635 v~~~~~Lf~~lp-~~--~~v~~~Hs~~v~~~~---L-p~~~~vlA~s~dg~-V~ai~~~~~p-i~GVQFHPE~i~t~~~~ 705 (720)
T PRK13566 635 VRGPGRLFSGLP-EE--FTVGRYHSLFADPET---L-PDELLVTAETEDGV-IMAIEHKTLP-VAAVQFHPESIMTLGGD 705 (720)
T ss_pred ECCCCchhhcCC-CC--CEEEEecceeEeecc---C-CCceEEEEEeCCCc-EEEEEECCCC-EEEEeccCeeCCcCCch
Confidence 655545555543 23 344567887765432 3 67899999999886 9999999988 4699999998543 23
Q ss_pred CchHHHHHHHHHHh
Q 006689 568 KPSPLFLGLIAAAC 581 (635)
Q Consensus 568 ~p~pLF~~Fv~aa~ 581 (635)
.+..+|++|++.+.
T Consensus 706 ~G~~ii~nfl~~~~ 719 (720)
T PRK13566 706 VGLRIIENVVRLLA 719 (720)
T ss_pred hHHHHHHHHHHHhh
Confidence 47899999998874
No 43
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.86 E-value=8.4e-21 Score=187.82 Aligned_cols=187 Identities=19% Similarity=0.209 Sum_probs=118.7
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcc
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 411 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~ 411 (635)
++|+|| ||+.. ++.|+.++|++.|+++.+ +.. + +.+.++|+||+|| +|.+..
T Consensus 1 m~i~ii-d~g~g--n~~s~~~~l~~~g~~~~~------v~~-----------~-------~~~~~~d~iIlPG-~G~~~~ 52 (196)
T PRK13170 1 MNVVII-DTGCA--NLSSVKFAIERLGYEPVV------SRD-----------P-------DVILAADKLFLPG-VGTAQA 52 (196)
T ss_pred CeEEEE-eCCCc--hHHHHHHHHHHCCCeEEE------ECC-----------H-------HHhCCCCEEEECC-CCchHH
Confidence 589999 79865 899999999999876544 321 1 3567899999976 455432
Q ss_pred h--hH--HHHHHHHHHcCCCEEEEehhHHHHHHHHhccc--ccccCCCCCccCCCCCCCeeeeCC--CCCcCcCCCcccc
Q 006689 412 Q--GK--ILAAKYAREHRIPYLGICLGMQVAVIEFARSV--LNLRDANSTEFDPNTKNPCVIFMP--EGSKTHMGGTMRL 483 (635)
Q Consensus 412 e--g~--i~air~are~~iP~LGICLGmQllaie~GrnV--~glkda~S~Ef~~~~~~pvi~~mp--e~~~~h~GgtmrL 483 (635)
. .. ...++.+++.++|+||||+|||+|+.+++... -++. -.+..+. .++ ....+|+||+
T Consensus 53 ~~~~l~~~~l~~~i~~~~~PilGIClG~Qll~~~~~~~~~~~~lg---------~~~g~v~-~~~~~~~~~p~~G~~--- 119 (196)
T PRK13170 53 AMDQLRERELIDLIKACTQPVLGICLGMQLLGERSEESGGVDCLG---------IIDGPVK-KMTDFGLPLPHMGWN--- 119 (196)
T ss_pred HHHHHHHcChHHHHHHcCCCEEEECHHHHHHhhhcccCCCCCCcc---------cccEEEE-ECCCCCCCCCccccc---
Confidence 1 11 12345555668999999999999998874321 1100 0011121 121 1245788883
Q ss_pred CceeEEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCc
Q 006689 484 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYK 563 (635)
Q Consensus 484 G~~~v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~s 563 (635)
++.+.+++.++..+. +. ...+|.|+|++.+ +...++.++++..+.++ ..+.+ ++|+|||||++
T Consensus 120 ---~v~~~~~~~l~~~l~-~~--~~v~~~Hs~~lp~---------~~~~la~s~~~~~~~~~-~~~~~-i~G~QFHPE~~ 182 (196)
T PRK13170 120 ---QVTPQAGHPLFQGIE-DG--SYFYFVHSYAMPV---------NEYTIAQCNYGEPFSAA-IQKDN-FFGVQFHPERS 182 (196)
T ss_pred ---eeEeCCCChhhhCCC-cC--CEEEEECeeecCC---------CCcEEEEecCCCeEEEE-EEcCC-EEEEECCCCCc
Confidence 455555545666553 23 3456788998743 22366777777634433 34445 68999999998
Q ss_pred CCCCCchHHHHHHHH
Q 006689 564 SRPGKPSPLFLGLIA 578 (635)
Q Consensus 564 s~p~~p~pLF~~Fv~ 578 (635)
. ..+..++.+|++
T Consensus 183 ~--~~G~~~l~nfl~ 195 (196)
T PRK13170 183 G--AAGAQLLKNFLE 195 (196)
T ss_pred c--cccHHHHHHHhh
Confidence 5 358999999975
No 44
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.85 E-value=2.3e-21 Score=194.90 Aligned_cols=171 Identities=27% Similarity=0.327 Sum_probs=107.9
Q ss_pred HHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCC--------CC---cc-----
Q 006689 348 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG--------NR---GV----- 411 (635)
Q Consensus 348 ~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG--------~r---g~----- 411 (635)
.+.+++++.+|+..-. .+...+ ...+.+.++.+||||+|||.- .. ..
T Consensus 27 ~~Yv~~i~~aG~~pv~----ip~~~~-------------~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~ 89 (217)
T PF07722_consen 27 ASYVKAIEAAGGRPVP----IPYDAD-------------DEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDP 89 (217)
T ss_dssp HHHHHHHHHTT-EEEE----E-SS---------------HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHH
T ss_pred HHHHHHHHHcCCEEEE----EccCCC-------------HHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCH
Confidence 4558899999976432 222211 112446688999999999962 11 11
Q ss_pred ---hhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeE
Q 006689 412 ---QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRT 488 (635)
Q Consensus 412 ---eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v 488 (635)
.-.+.++++|+++++|+||||+|||+|++++|+++.. +.... . . ..... .+. .....|++
T Consensus 90 ~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~~GGtl~q--~~~~~-~--~----~~~~~-----~~~---~~~~~h~v 152 (217)
T PF07722_consen 90 ERDIFELALIRNALGRGKPILGICRGMQLLNVAFGGTLYQ--DIPDQ-P--G----FPDHR-----QHP---QDFPSHPV 152 (217)
T ss_dssp HHHHHHHHHHHHHCCTT--EEEETHHHHHHHHHCCSSEES--CCCCS-S-------EEECE-----E-S----TS--EEE
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHHhCCCcee--ecccC-c--C----ccccc-----ccc---cccccccc
Confidence 1246667888889999999999999999999999853 21110 0 0 00000 000 02347888
Q ss_pred EEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCC-cEEEEcccCC
Q 006689 489 YFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHP-YFIGVQFHPE 561 (635)
Q Consensus 489 ~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p-~fvGVQFHPE 561 (635)
.+.++ |+++++++ ...+.....|.+.|.+ + ..|++++|+++||. +|+||.++++ |++|||||||
T Consensus 153 ~i~~~-s~l~~~~~-~~~~~vns~Hhq~v~~-----l-~~~l~v~A~s~Dg~-iEaie~~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 153 RIVPG-SLLAKILG-SEEIEVNSFHHQAVKP-----L-GEGLRVTARSPDGV-IEAIESPEHKYPILGVQWHPE 217 (217)
T ss_dssp EEETT-STCCCTSH-HCTEEEEEEECEEECC-----H-HCCEEEEEEECTSS-EEEEEECCESS-EEEESS-CC
T ss_pred eeccC-chHHHHhC-cCcceeecchhhhhhc-----c-CCCceEEEEecCCc-EEEEEEcCCCCCEEEEEeCCC
Confidence 88888 89999996 3333444556688765 3 57999999999997 9999999988 8999999999
No 45
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.85 E-value=1.4e-20 Score=185.13 Aligned_cols=149 Identities=24% Similarity=0.337 Sum_probs=109.4
Q ss_pred HHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCc-----------------
Q 006689 348 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG----------------- 410 (635)
Q Consensus 348 ~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg----------------- 410 (635)
.+++++|+.+|+.+.+. .+ +. +. ....+.+.++||||+|||++...
T Consensus 22 ~~~~~~l~~~G~~~~iv---~~-~~-~~------------~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~ 84 (189)
T cd01745 22 QYYVDAVRKAGGLPVLL---PP-VD-DE------------EDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPE 84 (189)
T ss_pred HHHHHHHHHCCCEEEEe---CC-CC-Ch------------HHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChh
Confidence 46889999999765432 11 11 11 01224567899999999975310
Q ss_pred -chhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEE
Q 006689 411 -VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 489 (635)
Q Consensus 411 -~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~ 489 (635)
....+.+++++.+.++|+||||+|||+|+.++|++|.+.+
T Consensus 85 r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~~--------------------------------------- 125 (189)
T cd01745 85 RDAFELALLRAALERGKPILGICRGMQLLNVALGGTLYQDI--------------------------------------- 125 (189)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcchHHHHHHHhCCeEEcCC---------------------------------------
Confidence 0134778888888999999999999999999888763200
Q ss_pred EecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCC-CCC
Q 006689 490 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSR-PGK 568 (635)
Q Consensus 490 l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~-p~~ 568 (635)
.++ +.|+++| ..+ +.+++++|+++|+. +|++++++|++++|+|||||+... |.+
T Consensus 126 ----------------~v~--~~H~~~v-----~~~-~~~~~vla~~~d~~-vea~~~~~~~~~~gvQfHPE~~~~~~~~ 180 (189)
T cd01745 126 ----------------RVN--SLHHQAI-----KRL-ADGLRVEARAPDGV-IEAIESPDRPFVLGVQWHPEWLADTDPD 180 (189)
T ss_pred ----------------cee--chHHHHH-----hhc-CCCCEEEEECCCCc-EEEEEeCCCCeEEEEecCCCcCcccCch
Confidence 122 3466554 344 67899999998886 999999987778999999999988 778
Q ss_pred chHHHHHHH
Q 006689 569 PSPLFLGLI 577 (635)
Q Consensus 569 p~pLF~~Fv 577 (635)
...+|++|+
T Consensus 181 ~~~if~~f~ 189 (189)
T cd01745 181 SLKLFEAFV 189 (189)
T ss_pred HhHHHHHhC
Confidence 899999984
No 46
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.84 E-value=1.4e-20 Score=210.66 Aligned_cols=191 Identities=20% Similarity=0.252 Sum_probs=132.2
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhcc--CCCEEEECCCCCCC
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK--GADGILVPGGFGNR 409 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~--~~DGIllPGGfG~r 409 (635)
-+|+|+ ||++. .-.++.++|+.+|+.+.+. +.+.. . +.+. ++||||+|||+.+.
T Consensus 4 ~~i~vl-D~Gsq--~~~li~r~lrelg~~~~v~----p~~~~-~----------------~~l~~~~~dgIIlsGGp~sv 59 (511)
T PRK00074 4 DKILIL-DFGSQ--YTQLIARRVRELGVYSEIV----PYDIS-A----------------EEIRAFNPKGIILSGGPASV 59 (511)
T ss_pred CEEEEE-ECCCC--cHHHHHHHHHHCCCeEEEE----ECCCC-H----------------HHHhccCCCEEEECCCCccc
Confidence 369999 68743 2346889999999775542 22211 0 1222 56999999998764
Q ss_pred cchhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEE
Q 006689 410 GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTY 489 (635)
Q Consensus 410 g~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~ 489 (635)
-.++.....+.+.+.++|+||||+|||+|+.++|++|...+ . .+. |.+++.
T Consensus 60 ~~~~~p~~~~~i~~~~~PvLGIC~G~QlLa~~lGG~V~~~~---~--------------------~e~------G~~~i~ 110 (511)
T PRK00074 60 YEEGAPRADPEIFELGVPVLGICYGMQLMAHQLGGKVERAG---K--------------------REY------GRAELE 110 (511)
T ss_pred ccCCCccccHHHHhCCCCEEEECHHHHHHHHHhCCeEEecC---C--------------------ccc------ceEEEE
Confidence 32222333456677899999999999999999999885321 1 122 345566
Q ss_pred EecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCc
Q 006689 490 FQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKP 569 (635)
Q Consensus 490 l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p 569 (635)
+.+++.++..+. .... .++.|+++|. .+ +.|++++|.++++. ++++++.+.+ ++|+|||||++..+ ++
T Consensus 111 i~~~~~Lf~~l~-~~~~--v~~~H~d~V~-----~l-p~g~~vlA~s~~~~-v~ai~~~~~~-i~GvQFHPE~~~t~-~G 178 (511)
T PRK00074 111 VDNDSPLFKGLP-EEQD--VWMSHGDKVT-----EL-PEGFKVIASTENCP-IAAIANEERK-FYGVQFHPEVTHTP-QG 178 (511)
T ss_pred EcCCChhhhcCC-CceE--EEEECCeEEE-----ec-CCCcEEEEEeCCCC-EEEEEeCCCC-EEEEeCCCCcCCch-hH
Confidence 655534555442 2333 4456887763 33 68999999998876 9999998888 57999999999876 57
Q ss_pred hHHHHHHHHHHhcchhhh
Q 006689 570 SPLFLGLIAAACGQLDTL 587 (635)
Q Consensus 570 ~pLF~~Fv~aa~~~~~~~ 587 (635)
..+|++|+...++....|
T Consensus 179 ~~il~nFl~~i~~~~~~~ 196 (511)
T PRK00074 179 KKLLENFVFDICGCKGDW 196 (511)
T ss_pred HHHHHHHHHHhcCCCCCc
Confidence 899999997766655444
No 47
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.84 E-value=2.1e-20 Score=210.23 Aligned_cols=189 Identities=17% Similarity=0.247 Sum_probs=128.1
Q ss_pred EEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcc-h
Q 006689 334 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-Q 412 (635)
Q Consensus 334 IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~-e 412 (635)
|.+|+.|.++. .++.+.|+..|.. .+ .++.+.+.. .+.+ ...++||||++||||++.. .
T Consensus 2 il~idn~dsft---~nl~~~l~~~g~~-~v----~~~~~~~~~-------~~~~-----~~~~~d~vIlsgGP~~p~~~~ 61 (534)
T PRK14607 2 IILIDNYDSFT---YNIYQYIGELGPE-EI----EVVRNDEIT-------IEEI-----EALNPSHIVISPGPGRPEEAG 61 (534)
T ss_pred EEEEECchhHH---HHHHHHHHHcCCC-eE----EEECCCCCC-------HHHH-----HhcCCCEEEECCCCCChhhCC
Confidence 78888776542 4788999999875 11 122222211 0001 1236899999999999742 2
Q ss_pred hHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEEec
Q 006689 413 GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQI 492 (635)
Q Consensus 413 g~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~ 492 (635)
..+..++.+ +.++|+||||+|||+|+.++|++|.+.+. ++.|+ .+++....
T Consensus 62 ~~~~li~~~-~~~~PvLGIClG~QlLa~a~Gg~V~~~~~-----------------------~~~G~-----~~~v~~~~ 112 (534)
T PRK14607 62 ISVEVIRHF-SGKVPILGVCLGHQAIGYAFGGKIVHAKR-----------------------ILHGK-----TSPIDHNG 112 (534)
T ss_pred ccHHHHHHh-hcCCCEEEEcHHHHHHHHHcCCeEecCCc-----------------------cccCC-----ceeEEECC
Confidence 234556654 67899999999999999999999865331 12233 23343332
Q ss_pred CCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHH
Q 006689 493 KDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPL 572 (635)
Q Consensus 493 ~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~pL 572 (635)
. +++..+. .. +...+.|+|.|+... + +.+++++|+++++. +++++++++| ++|+|||||... +.++..+
T Consensus 113 ~-~lf~~~~-~~--~~v~~~Hs~~v~~~~---l-p~~~~vlA~s~d~~-i~a~~~~~~p-i~GvQFHPE~~~-t~~g~~i 181 (534)
T PRK14607 113 K-GLFRGIP-NP--TVATRYHSLVVEEAS---L-PECLEVTAKSDDGE-IMGIRHKEHP-IFGVQFHPESIL-TEEGKRI 181 (534)
T ss_pred C-cchhcCC-CC--cEEeeccchheeccc---C-CCCeEEEEEcCCCC-EEEEEECCCC-EEEEEeCCCCCC-ChhHHHH
Confidence 2 4454443 22 234567888885432 3 67899999999887 9999999999 469999999754 4468899
Q ss_pred HHHHHHHHhc
Q 006689 573 FLGLIAAACG 582 (635)
Q Consensus 573 F~~Fv~aa~~ 582 (635)
|++|++.+..
T Consensus 182 ~~nFl~~~~~ 191 (534)
T PRK14607 182 LKNFLNYQRE 191 (534)
T ss_pred HHHHHHHhhc
Confidence 9999998753
No 48
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.84 E-value=3.9e-20 Score=184.91 Aligned_cols=194 Identities=21% Similarity=0.232 Sum_probs=121.1
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCc-
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 410 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg- 410 (635)
+||+|| ||+.. +..|+.++|+..|+++ ++.|+.. | +.+.++|||||||+.....
T Consensus 2 ~~~~ii-d~g~g--n~~s~~~al~~~g~~~----~v~~~~~-----------~-------~~l~~~d~lIlpG~~~~~~~ 56 (209)
T PRK13146 2 MTVAII-DYGSG--NLRSAAKALERAGAGA----DVVVTAD-----------P-------DAVAAADRVVLPGVGAFADC 56 (209)
T ss_pred CeEEEE-ECCCC--hHHHHHHHHHHcCCCc----cEEEECC-----------H-------HHhcCCCEEEECCCCcHHHH
Confidence 589999 79855 7799999999999864 3445532 1 4578999999999632211
Q ss_pred ---c--hhHHHHH-HHHHHcCCCEEEEehhHHHHHHH---HhcccccccCCCCCccCCCCCCCeeeeCCC---CCcCcCC
Q 006689 411 ---V--QGKILAA-KYAREHRIPYLGICLGMQVAVIE---FARSVLNLRDANSTEFDPNTKNPCVIFMPE---GSKTHMG 478 (635)
Q Consensus 411 ---~--eg~i~ai-r~are~~iP~LGICLGmQllaie---~GrnV~glkda~S~Ef~~~~~~pvi~~mpe---~~~~h~G 478 (635)
. .+....+ +.+.++++|+||||+|||+|+.+ .+ .+-++. -.+..|...-|+ ...+|+|
T Consensus 57 ~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~~e~~-~~~glg---------~l~g~v~~~~~~~~~~~~p~~G 126 (209)
T PRK13146 57 MRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQLLFERGLEHG-DTPGLG---------LIPGEVVRFQPDGPALKVPHMG 126 (209)
T ss_pred HHHHHHCCcHHHHHHHHHhCCCcEEEECHHHHHHhhcccccC-CCCCcc---------eEeEEEEEcCCCCCCCccCccC
Confidence 1 1233444 44456899999999999999864 10 000000 001111111011 1346788
Q ss_pred CccccCceeEEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcc
Q 006689 479 GTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQF 558 (635)
Q Consensus 479 gtmrLG~~~v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQF 558 (635)
|+ ++...++++++..+. +.. ..++.|+|.+.+. + +..++++++++..++++.. +.+ ++|+||
T Consensus 127 ~~------~v~~~~~~~lf~~~~-~~~--~v~~~Hs~~v~~~------~-~~~~la~s~~~~~~~a~~~-~~~-i~GvQF 188 (209)
T PRK13146 127 WN------TVDQTRDHPLFAGIP-DGA--RFYFVHSYYAQPA------N-PADVVAWTDYGGPFTAAVA-RDN-LFATQF 188 (209)
T ss_pred hH------HeeeCCCChhccCCC-CCC--EEEEEeEEEEEcC------C-CCcEEEEEcCCCEEEEEEe-cCC-EEEEEc
Confidence 74 445545545666554 232 4467899988532 1 3467888877654666654 344 689999
Q ss_pred cCCCcCCCCCchHHHHHHHHHH
Q 006689 559 HPEYKSRPGKPSPLFLGLIAAA 580 (635)
Q Consensus 559 HPE~ss~p~~p~pLF~~Fv~aa 580 (635)
|||+++ .....++++|++.+
T Consensus 189 HPE~s~--~~G~~ll~nfl~~~ 208 (209)
T PRK13146 189 HPEKSQ--DAGLALLRNFLAWL 208 (209)
T ss_pred CCcccH--HHHHHHHHHHHhhc
Confidence 999874 35789999998763
No 49
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.84 E-value=4.3e-20 Score=185.02 Aligned_cols=192 Identities=21% Similarity=0.205 Sum_probs=119.9
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCc-
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 410 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg- 410 (635)
++|+|+ +|+.. +..|+.++|+.+|+++.+ ++.. +.+.++|+|++|| +|++.
T Consensus 2 ~~v~ii-d~~~G--N~~sl~~al~~~g~~v~v------v~~~------------------~~l~~~d~iIlPG-~g~~~~ 53 (210)
T CHL00188 2 MKIGII-DYSMG--NLHSVSRAIQQAGQQPCI------INSE------------------SELAQVHALVLPG-VGSFDL 53 (210)
T ss_pred cEEEEE-EcCCc--cHHHHHHHHHHcCCcEEE------EcCH------------------HHhhhCCEEEECC-CCchHH
Confidence 579999 79854 789999999999987654 2210 2456799999887 45532
Q ss_pred -c-----hhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccc-cccCCCCCccCCCCCCCeeeeC--CCCCcCcCCCcc
Q 006689 411 -V-----QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVL-NLRDANSTEFDPNTKNPCVIFM--PEGSKTHMGGTM 481 (635)
Q Consensus 411 -~-----eg~i~air~are~~iP~LGICLGmQllaie~GrnV~-glkda~S~Ef~~~~~~pvi~~m--pe~~~~h~Ggtm 481 (635)
. .+....++.+.++++|+||||+|||+|+..++.... ++. -.++.|..+. +..+.+|+||+.
T Consensus 54 ~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg---------~~~G~v~~~~~~~~~~~p~~Gw~~ 124 (210)
T CHL00188 54 AMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKEEGLG---------IYKGQVKRLKHSPVKVIPHMGWNR 124 (210)
T ss_pred HHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHHhhccccCCcCCcc---------ceeEEEEECCCCCCCccCccCCcc
Confidence 1 255677888888899999999999999765433210 000 0122222221 123679999953
Q ss_pred ccCceeEEEecC------CchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEE
Q 006689 482 RLGSRRTYFQIK------DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIG 555 (635)
Q Consensus 482 rLG~~~v~l~~~------~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvG 555 (635)
+.+..+ ++++.++. ++. ..++.|+|.+.|... .-+..++...+...+++++.. + ++|
T Consensus 125 ------v~~~~~~~~~~~~~lf~~l~-~~~--~v~~~HS~~v~p~~~-----~~l~~t~~~~~~~~v~a~~~~--~-i~G 187 (210)
T CHL00188 125 ------LECQNSECQNSEWVNWKAWP-LNP--WAYFVHSYGVMPKSQ-----ACATTTTFYGKQQMVAAIEYD--N-IFA 187 (210)
T ss_pred ------ceecCCcccccCChhhcCCC-CCC--EEEEeCccEecCCCC-----ceEEEEEecCCcceEEEEecC--C-EEE
Confidence 222222 24666654 233 345678998864321 112233323222348888852 4 679
Q ss_pred EcccCCCcCCCCCchHHHHHHHHH
Q 006689 556 VQFHPEYKSRPGKPSPLFLGLIAA 579 (635)
Q Consensus 556 VQFHPE~ss~p~~p~pLF~~Fv~a 579 (635)
+|||||++ .+ .+..++++|++.
T Consensus 188 vQFHPE~s-~~-~G~~il~nfl~~ 209 (210)
T CHL00188 188 MQFHPEKS-GE-FGLWLLREFMKK 209 (210)
T ss_pred EecCCccc-cH-hHHHHHHHHHhh
Confidence 99999988 33 478899999865
No 50
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.83 E-value=1.3e-19 Score=179.94 Aligned_cols=195 Identities=19% Similarity=0.229 Sum_probs=121.5
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCc--
Q 006689 333 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-- 410 (635)
Q Consensus 333 ~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg-- 410 (635)
+|+++ ||+.. +-.++.++|+..|+++.+. . ++ +.+.++|||++||| |...
T Consensus 1 ~i~~~-d~~~~--~~~~i~~~l~~~G~~v~~~------~-----------~~-------~~l~~~d~iiipG~-~~~~~~ 52 (205)
T PRK13141 1 MIAII-DYGMG--NLRSVEKALERLGAEAVIT------S-----------DP-------EEILAADGVILPGV-GAFPDA 52 (205)
T ss_pred CEEEE-EcCCc--hHHHHHHHHHHCCCeEEEE------C-----------CH-------HHhccCCEEEECCC-CchHHH
Confidence 47888 68844 4478999999999876552 1 01 35678999999986 3221
Q ss_pred -----chhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhc--ccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCcccc
Q 006689 411 -----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFAR--SVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRL 483 (635)
Q Consensus 411 -----~eg~i~air~are~~iP~LGICLGmQllaie~Gr--nV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrL 483 (635)
..+..+.++.+.++++|+||||+|||+|+.++.. .+.+|.. + ...+. ..+. +.-++....
T Consensus 53 ~~~~~~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~~~~~~~~~~lg~-----l----~g~v~-~~~~---~~~~~~~~~ 119 (205)
T PRK13141 53 MANLRERGLDEVIKEAVASGKPLLGICLGMQLLFESSEEFGETEGLGL-----L----PGRVR-RFPP---EEGLKVPHM 119 (205)
T ss_pred HHHHHHcChHHHHHHHHHCCCcEEEECHHHHHhhhccccCCCCCccce-----E----EEEEE-EcCC---CCCCcccEe
Confidence 1246777888888999999999999999875311 1111000 0 01111 1110 000112223
Q ss_pred CceeEEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCc
Q 006689 484 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYK 563 (635)
Q Consensus 484 G~~~v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~s 563 (635)
|.+++.+.+++.++..+. ....+ ++.|++.+.+ +.++.+++.++++..++++.. +.+ ++|||||||+.
T Consensus 120 g~~~i~~~~~~~l~~~l~-~~~~v--~~~Hs~~v~~-------~~~~~v~a~~~~~~~~~a~~~-~~~-i~GvQfHPE~~ 187 (205)
T PRK13141 120 GWNQLELKKESPLLKGIP-DGAYV--YFVHSYYADP-------CDEEYVAATTDYGVEFPAAVG-KDN-VFGAQFHPEKS 187 (205)
T ss_pred cCccceeCCCChhhhCCC-CCCEE--EEECeeEecc-------CCcCeEEEEEeCCcEEEEEEe-cCC-EEEEeCCCccc
Confidence 456666655544554443 23333 3568888842 356788888877755777754 344 78999999997
Q ss_pred CCCCCchHHHHHHHHHHhc
Q 006689 564 SRPGKPSPLFLGLIAAACG 582 (635)
Q Consensus 564 s~p~~p~pLF~~Fv~aa~~ 582 (635)
. + ....+|++|+++|.+
T Consensus 188 ~-~-~g~~l~~~fl~~~~~ 204 (205)
T PRK13141 188 G-D-VGLKILKNFVEMVEE 204 (205)
T ss_pred h-H-HHHHHHHHHHHHhhc
Confidence 5 3 578999999988743
No 51
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.82 E-value=3.2e-19 Score=178.80 Aligned_cols=196 Identities=20% Similarity=0.226 Sum_probs=121.4
Q ss_pred EEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcc--
Q 006689 334 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 411 (635)
Q Consensus 334 IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~-- 411 (635)
|+|| ||+.. +..|+.+||+..+.++. |+.. | +.+.++|+||+||+ |++..
T Consensus 2 i~ii-dyg~g--Nl~s~~~al~~~~~~~~------~~~~-----------~-------~~l~~~d~iIlPG~-g~~~~~~ 53 (210)
T PRK14004 2 IAIL-DYGMG--NIHSCLKAVSLYTKDFV------FTSD-----------P-------ETIENSKALILPGD-GHFDKAM 53 (210)
T ss_pred EEEE-ECCCc--hHHHHHHHHHHcCCeEE------EECC-----------H-------HHhccCCEEEECCC-CchHHHH
Confidence 8899 79966 88999999999987543 3321 1 45679999999996 54321
Q ss_pred -----hhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCC--CCcCcCCCccccC
Q 006689 412 -----QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPE--GSKTHMGGTMRLG 484 (635)
Q Consensus 412 -----eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe--~~~~h~GgtmrLG 484 (635)
.+....++.+.+.++|+||||+|||+|+-+++-..-+.. ..+.+--.-.+..|. .|+. ...+|+||+.
T Consensus 54 ~~l~~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~~~e~~~~~~-~~~~~Glg~~~~~v~-~~~~~~~~~ph~Gw~~--- 128 (210)
T PRK14004 54 ENLNSTGLRSTIDKHVESGKPLFGICIGFQILFESSEETNQGTK-KEQIEGLGYIKGKIK-KFEGKDFKVPHIGWNR--- 128 (210)
T ss_pred HHHHHcCcHHHHHHHHHcCCCEEEECHhHHHHHHhcccccCCCc-CcccCCcceeEEEEE-EcCCCCCcCCccCccc---
Confidence 256777777778899999999999999866432100000 000000000012222 2232 3568999953
Q ss_pred ceeEEEe--cCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCC-CCeEEEEEeCCCCcEEEEcccCC
Q 006689 485 SRRTYFQ--IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET-SQRMEIVELPNHPYFIGVQFHPE 561 (635)
Q Consensus 485 ~~~v~l~--~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~d-g~~vE~iE~~~~p~fvGVQFHPE 561 (635)
+.+. .+++++..+. +. ...+|.|+|.+++. .-+..++.+++ +..+.++. .+.+ ++|+|||||
T Consensus 129 ---v~~~~~~~~~lf~~l~-~~--~~v~~~HS~~~~~~-------~~l~~sa~~~~~g~~~~a~~-~~~~-i~GvQFHPE 193 (210)
T PRK14004 129 ---LQIRRKDKSKLLKGIG-DQ--SFFYFIHSYRPTGA-------EGNAITGLCDYYQEKFPAVV-EKEN-IFGTQFHPE 193 (210)
T ss_pred ---ceeccCCCCccccCCC-CC--CEEEEeceeecCCC-------CcceEEEeeeECCEEEEEEE-ecCC-EEEEeCCcc
Confidence 2222 2335566654 23 34567889865331 22456666665 55444554 4555 679999999
Q ss_pred CcCCCCCchHHHHHHHHH
Q 006689 562 YKSRPGKPSPLFLGLIAA 579 (635)
Q Consensus 562 ~ss~p~~p~pLF~~Fv~a 579 (635)
++. + .+..++++|++.
T Consensus 194 ~s~-~-~G~~iL~nfl~~ 209 (210)
T PRK14004 194 KSH-T-HGLKLLENFIEF 209 (210)
T ss_pred cCc-h-hHHHHHHHHHhh
Confidence 887 4 689999999864
No 52
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.82 E-value=3.5e-19 Score=176.17 Aligned_cols=178 Identities=25% Similarity=0.288 Sum_probs=114.1
Q ss_pred EEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCc---
Q 006689 334 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG--- 410 (635)
Q Consensus 334 IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg--- 410 (635)
|+|+ ||+.. ++.|+.++|+..|+++.+ +.. + +.+.++|+||+||| |+++
T Consensus 2 i~vi-d~g~g--n~~~~~~~l~~~g~~v~~------~~~-----------~-------~~l~~~d~lilpG~-g~~~~~~ 53 (199)
T PRK13181 2 IAII-DYGAG--NLRSVANALKRLGVEAVV------SSD-----------P-------EEIAGADKVILPGV-GAFGQAM 53 (199)
T ss_pred EEEE-eCCCC--hHHHHHHHHHHCCCcEEE------EcC-----------h-------HHhccCCEEEECCC-CCHHHHH
Confidence 7888 79865 789999999999977544 211 1 34678999999885 4432
Q ss_pred ----chhHHHHHHHHHHcCCCEEEEehhHHHHHHHH-----------hcccccccCCCCCccCCCCCCCeeeeCCCCCcC
Q 006689 411 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIEF-----------ARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKT 475 (635)
Q Consensus 411 ----~eg~i~air~are~~iP~LGICLGmQllaie~-----------GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~ 475 (635)
..+....++.+.+.++|+||||+|||+|+.++ +++|.+.+.. ....+
T Consensus 54 ~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~~~~------------------~~~~~ 115 (199)
T PRK13181 54 RSLRESGLDEALKEHVEKKQPVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRFRSE------------------PLKVP 115 (199)
T ss_pred HHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhhcccCCcCCcceEEEEEEEcCCC------------------CCCCC
Confidence 12456778888889999999999999999773 2222211100 01124
Q ss_pred cCCCccccCceeEEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeE-EEEEeCCCCcEE
Q 006689 476 HMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRM-EIVELPNHPYFI 554 (635)
Q Consensus 476 h~GgtmrLG~~~v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~v-E~iE~~~~p~fv 554 (635)
++|+ +++.+.+++.++..+. +... .++.|+|.+.+. + ...++|+++++..+ ++++ +.+ ++
T Consensus 116 ~~G~------~~v~~~~~~~lf~~l~-~~~~--~~~~Hs~~v~~~------~-~~~~lA~s~~~~~~~~~~~--~~~-i~ 176 (199)
T PRK13181 116 QMGW------NSVKPLKESPLFKGIE-EGSY--FYFVHSYYVPCE------D-PEDVLATTEYGVPFCSAVA--KDN-IY 176 (199)
T ss_pred ccCc------cccccCCCChhHcCCC-CCCE--EEEeCeeEeccC------C-cccEEEEEcCCCEEEEEEE--CCC-EE
Confidence 5555 4444444434555543 2333 346788887432 1 23477888765522 3333 445 67
Q ss_pred EEcccCCCcCCCCCchHHHHHHHH
Q 006689 555 GVQFHPEYKSRPGKPSPLFLGLIA 578 (635)
Q Consensus 555 GVQFHPE~ss~p~~p~pLF~~Fv~ 578 (635)
|+|||||++. + ....+|++|++
T Consensus 177 GvQFHPE~~~-~-~g~~ll~nfl~ 198 (199)
T PRK13181 177 AVQFHPEKSG-K-AGLKLLKNFAE 198 (199)
T ss_pred EEECCCccCC-H-HHHHHHHHHHh
Confidence 9999999873 3 57889999975
No 53
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.81 E-value=3.4e-19 Score=208.33 Aligned_cols=196 Identities=17% Similarity=0.186 Sum_probs=129.8
Q ss_pred CccEEEEEeccCCCcchHHHHHHHHHHc-cccceeeeEEEEecCCCCCccccCCChhhhhHHHH---hccCCCEEEECCC
Q 006689 330 EPVRIAMVGKYTGLSDAYLSILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK---LLKGADGILVPGG 405 (635)
Q Consensus 330 ~~v~IalVGkY~~l~DaY~SI~~AL~~a-g~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~---~L~~~DGIllPGG 405 (635)
+.++|.+|+.|.++. .+++..|... |..+.+. ..+..++ .+... .+..+|||||+||
T Consensus 80 ~~~~iLlIDnyDSfT---yNL~~~L~~~~g~~~~Vv----~nd~~~~------------~~~~~~~~~~~~~d~IVlSPG 140 (918)
T PLN02889 80 EFVRTLLIDNYDSYT---YNIYQELSIVNGVPPVVV----RNDEWTW------------EEVYHYLYEEKAFDNIVISPG 140 (918)
T ss_pred ccceEEEEeCCCchH---HHHHHHHHHhcCCCEEEE----eCCCCCH------------HHHHhhhhcccCCCEEEECCC
Confidence 347999999998663 4688888887 7765442 1111111 11111 2457899999999
Q ss_pred CCCCcch---hH-HHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCcc
Q 006689 406 FGNRGVQ---GK-ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTM 481 (635)
Q Consensus 406 fG~rg~e---g~-i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~Ggtm 481 (635)
||+|... |. ++.++.+ .++|+||||||||+|+.+||++|.+.+. +.+|.+
T Consensus 141 PG~P~~~~d~Gi~~~~i~~~--~~iPILGICLGhQ~i~~~~Gg~V~~~~~-----------------------~~HG~~- 194 (918)
T PLN02889 141 PGSPTCPADIGICLRLLLEC--RDIPILGVCLGHQALGYVHGARIVHAPE-----------------------PVHGRL- 194 (918)
T ss_pred CCCccchHHHHHHHHHHHHh--CCCcEEEEcHHHHHHHHhcCceEEeCCC-----------------------ceeeee-
Confidence 9998532 22 2333322 4799999999999999999999966431 111221
Q ss_pred ccCceeEEEecCCchhhhccCC---ceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCC--------------------
Q 006689 482 RLGSRRTYFQIKDCKSAKLYGN---RTFIDERHRHRYEVNPDMIARLENAGLSFTGKDET-------------------- 538 (635)
Q Consensus 482 rLG~~~v~l~~~~sll~~iyg~---~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~d-------------------- 538 (635)
..+. ..++.++.++... ...+ .| .|+..|++..+ +.+++++|++.+
T Consensus 195 ----s~I~-h~~~~lF~glp~~~~~~f~v-~R-YHSL~v~~~~l----P~~L~~~A~t~~~~~~~~~~~~~~~~~~~a~~ 263 (918)
T PLN02889 195 ----SEIE-HNGCRLFDDIPSGRNSGFKV-VR-YHSLVIDAESL----PKELVPIAWTSSSDTLSFLESQKSGLVPDAYE 263 (918)
T ss_pred ----eeEe-ecCchhhcCCCcCCCCCceE-Ee-CCCcccccCCC----CCceEEEEEECCCccccccccccccccccccc
Confidence 1121 1232456565421 2334 33 48888865433 567888887754
Q ss_pred --------------------------------CCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHHHhcc
Q 006689 539 --------------------------------SQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAAACGQ 583 (635)
Q Consensus 539 --------------------------------g~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~pLF~~Fv~aa~~~ 583 (635)
+..+++++++.+|+ +|||||||....+ .+..||.+|++++..+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viMairH~~~P~-~GVQfHPESi~t~-~G~~l~~nF~~~~~~~ 338 (918)
T PLN02889 264 SQIGQSGSSDPFSSKLKNGTSWPSSHSERMQNGKILMGIMHSTRPH-YGLQFHPESIATC-YGRQIFKNFREITQDY 338 (918)
T ss_pred ccccccccccccccccccccccccccccccCCCCeeEEEEECCCce-EEEEeCCccccCc-hhHHHHHHHHHHHHHH
Confidence 13699999999996 6999999998887 4789999999998754
No 54
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.81 E-value=6.9e-19 Score=174.56 Aligned_cols=186 Identities=24% Similarity=0.245 Sum_probs=114.2
Q ss_pred EEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcch-
Q 006689 334 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ- 412 (635)
Q Consensus 334 IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~e- 412 (635)
|++| ||+.. +-.|+.++|+..|+++.+ +.. + +.+.++|+||+||+ |++...
T Consensus 2 i~ii-d~g~~--n~~~v~~~l~~~g~~~~~------~~~-----------~-------~~l~~~d~lilPG~-g~~~~~~ 53 (201)
T PRK13152 2 IALI-DYKAG--NLNSVAKAFEKIGAINFI------AKN-----------P-------KDLQKADKLLLPGV-GSFKEAM 53 (201)
T ss_pred EEEE-ECCCC--cHHHHHHHHHHCCCeEEE------ECC-----------H-------HHHcCCCEEEECCC-CchHHHH
Confidence 8899 79854 679999999999876433 221 1 34678999999774 443211
Q ss_pred ------hHHHHHH-HHHHcCCCEEEEehhHHHHHHH-H-hcccccccCCCCCccCCCCCCCeeeeC--CCCCcCcCCCcc
Q 006689 413 ------GKILAAK-YAREHRIPYLGICLGMQVAVIE-F-ARSVLNLRDANSTEFDPNTKNPCVIFM--PEGSKTHMGGTM 481 (635)
Q Consensus 413 ------g~i~air-~are~~iP~LGICLGmQllaie-~-GrnV~glkda~S~Ef~~~~~~pvi~~m--pe~~~~h~Ggtm 481 (635)
+....++ ++.+.++|+||||+|||+|+.+ . ++.+-+|. . .+..|..+- +....+|+||
T Consensus 54 ~~l~~~~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~~~~~~~~~~lg-----~----~~g~v~~~~~~~~~~~~~~g~-- 122 (201)
T PRK13152 54 KNLKELGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLG-----F----IEGEVVKFEEDLNLKIPHMGW-- 122 (201)
T ss_pred HHHHHcCcHHHHHHHHHhCCCcEEEECHhHHHHhhcccccCCcCCcc-----c----ccEEEEECCCCCCCcCCccCe--
Confidence 2334444 4567899999999999999865 1 22111110 0 112222211 0112356665
Q ss_pred ccCceeEEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCC-eEEEEEeCCCCcEEEEcccC
Q 006689 482 RLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ-RMEIVELPNHPYFIGVQFHP 560 (635)
Q Consensus 482 rLG~~~v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~-~vE~iE~~~~p~fvGVQFHP 560 (635)
+++.+.+++.++..+. .+ ...++.|+|.+... ...++++++++. .+++++ +. .++|+||||
T Consensus 123 ----~~v~~~~~~~l~~~l~-~~--~~~~~vHS~~v~~~--------~~~v~a~~~~g~~~~~a~~--~~-~i~GvQFHP 184 (201)
T PRK13152 123 ----NELEILKQSPLYQGIP-EK--SDFYFVHSFYVKCK--------DEFVSAKAQYGHKFVASLQ--KD-NIFATQFHP 184 (201)
T ss_pred ----EEEEECCCChhhhCCC-CC--CeEEEEcccEeecC--------CCcEEEEECCCCEEEEEEe--cC-CEEEEeCCC
Confidence 5666666645555442 22 33467789988531 134778777764 344555 33 478999999
Q ss_pred CCcCCCCCchHHHHHHHH
Q 006689 561 EYKSRPGKPSPLFLGLIA 578 (635)
Q Consensus 561 E~ss~p~~p~pLF~~Fv~ 578 (635)
|++.. ....||++|++
T Consensus 185 E~~~~--~g~~ll~~Fl~ 200 (201)
T PRK13152 185 EKSQN--LGLKLLENFAR 200 (201)
T ss_pred eecCh--hhHHHHHHHHh
Confidence 98743 47889999975
No 55
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.81 E-value=3.5e-19 Score=175.72 Aligned_cols=186 Identities=23% Similarity=0.293 Sum_probs=116.2
Q ss_pred EEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcc--
Q 006689 334 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV-- 411 (635)
Q Consensus 334 IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~-- 411 (635)
|+|| ||+.. +-.++.++|+.+|+++.+. +.. +.+.++|+|++||| |.+..
T Consensus 1 i~i~-d~g~~--~~~~~~~~l~~~g~~v~v~------~~~------------------~~l~~~d~iiipG~-~~~~~~~ 52 (198)
T cd01748 1 IAII-DYGMG--NLRSVANALERLGAEVIIT------SDP------------------EEILSADKLILPGV-GAFGDAM 52 (198)
T ss_pred CEEE-eCCCC--hHHHHHHHHHHCCCeEEEE------cCh------------------HHhccCCEEEECCC-CcHHHHH
Confidence 5677 78854 6778999999999876653 110 24678999999875 44421
Q ss_pred -----hhHHHHHHHHHHcCCCEEEEehhHHHHHHHH--hcccccccCCCCCccCCCCCCCeeeeCCC---CCcCcCCCcc
Q 006689 412 -----QGKILAAKYAREHRIPYLGICLGMQVAVIEF--ARSVLNLRDANSTEFDPNTKNPCVIFMPE---GSKTHMGGTM 481 (635)
Q Consensus 412 -----eg~i~air~are~~iP~LGICLGmQllaie~--GrnV~glkda~S~Ef~~~~~~pvi~~mpe---~~~~h~Ggtm 481 (635)
.+..+.++.+.++++|+||||+|||+|+.++ ++.+-++. -+ +..+.. ++. ...+++|+
T Consensus 53 ~~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~~~~~~g~~~~~lg-----~~----~g~v~~-~~~~~~~~~~~~G~-- 120 (198)
T cd01748 53 ANLRERGLIEALKEAIASGKPFLGICLGMQLLFESSEEGGGTKGLG-----LI----PGKVVR-FPASEGLKVPHMGW-- 120 (198)
T ss_pred HHHHHcChHHHHHHHHHCCCcEEEECHHHHHhccccccCCCCCCCC-----Cc----ceEEEE-CCCCCCceEEEecc--
Confidence 2567888888889999999999999998762 11110000 00 111111 111 11234454
Q ss_pred ccCceeEEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCC
Q 006689 482 RLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPE 561 (635)
Q Consensus 482 rLG~~~v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE 561 (635)
+++...+++.++..+.+ ... ..+.|+|.+.+ +..+.++|.++++..+.++ ..+.+ ++|+|||||
T Consensus 121 ----~~v~~~~~~~lf~~l~~-~~~--v~~~Hs~~v~~-------~~~~~~la~s~~~~~~~~~-~~~~~-i~GvQFHPE 184 (198)
T cd01748 121 ----NQLEITKESPLFKGIPD-GSY--FYFVHSYYAPP-------DDPDYILATTDYGGKFPAA-VEKDN-IFGTQFHPE 184 (198)
T ss_pred ----ceEEECCCChhhhCCCC-CCe--EEEEeEEEEec-------CCcceEEEEecCCCeEEEE-EEcCC-EEEEECCCc
Confidence 45555555456666642 333 45678898853 2235678888776534444 44555 679999999
Q ss_pred CcCCCCCchHHHHHHH
Q 006689 562 YKSRPGKPSPLFLGLI 577 (635)
Q Consensus 562 ~ss~p~~p~pLF~~Fv 577 (635)
++.. .+..++++|+
T Consensus 185 ~~~~--~g~~~~~nf~ 198 (198)
T cd01748 185 KSGK--AGLKLLKNFL 198 (198)
T ss_pred cccH--hHHHHHHhhC
Confidence 9843 5788888884
No 56
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.81 E-value=2.7e-19 Score=200.93 Aligned_cols=188 Identities=18% Similarity=0.171 Sum_probs=123.4
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhc--cCCCEEEECCCCCCC
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNR 409 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIllPGGfG~r 409 (635)
.+|.+|+.|.++. .++.+.|+..|+++.+.- +..+.+. ..+.+ .++|+|||+||||++
T Consensus 2 ~~iLiIDn~dsft---~nl~~~lr~~g~~v~V~~---~~~~~~~--------------~~~~l~~~~~~~IIlSpGPg~p 61 (531)
T PRK09522 2 ADILLLDNIDSFT---YNLADQLRSNGHNVVIYR---NHIPAQT--------------LIERLATMSNPVLMLSPGPGVP 61 (531)
T ss_pred CeEEEEeCCChHH---HHHHHHHHHCCCCEEEEE---CCCCCcc--------------CHHHHHhcCcCEEEEcCCCCCh
Confidence 4799997666442 357888988887765531 1100000 01222 367899999999998
Q ss_pred cchhHH-HHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeE
Q 006689 410 GVQGKI-LAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRT 488 (635)
Q Consensus 410 g~eg~i-~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v 488 (635)
...+.. ..+++. ..++|+||||+|||+|+.+||++|...+. ...|.+ ..+
T Consensus 62 ~d~~~~~~i~~~~-~~~iPILGIClG~QlLa~a~GG~V~~~~~-----------------------~~~G~~-----~~i 112 (531)
T PRK09522 62 SEAGCMPELLTRL-RGKLPIIGICLGHQAIVEAYGGYVGQAGE-----------------------ILHGKA-----SSI 112 (531)
T ss_pred hhCCCCHHHHHHH-hcCCCEEEEcHHHHHHHHhcCCEEEeCCc-----------------------eeeeeE-----EEE
Confidence 643322 333333 35899999999999999999999854210 011211 111
Q ss_pred EEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCC
Q 006689 489 YFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGK 568 (635)
Q Consensus 489 ~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~ 568 (635)
. ..+++++..+. ....++ +.|++.+. .+ +.+++++|. .|+. +++++++++| ++|||||||..-++ +
T Consensus 113 ~-~~~~~lf~~~~-~~~~v~--~~Hs~~v~-----~l-P~~l~vlA~-sd~~-v~ai~~~~~~-i~GVQFHPEs~~T~-~ 178 (531)
T PRK09522 113 E-HDGQAMFAGLT-NPLPVA--RYHSLVGS-----NI-PAGLTINAH-FNGM-VMAVRHDADR-VCGFQFHPESILTT-Q 178 (531)
T ss_pred e-ecCCccccCCC-CCcEEE--Eehheecc-----cC-CCCcEEEEe-cCCC-EEEEEECCCC-EEEEEecCccccCc-c
Confidence 1 12224454443 234454 45677663 33 789999997 5676 9999999888 56999999998887 6
Q ss_pred chHHHHHHHHHHhc
Q 006689 569 PSPLFLGLIAAACG 582 (635)
Q Consensus 569 p~pLF~~Fv~aa~~ 582 (635)
+..+|++|++.+..
T Consensus 179 G~~il~NFl~~~~~ 192 (531)
T PRK09522 179 GARLLEQTLAWAQQ 192 (531)
T ss_pred hHHHHHHHHHHHhh
Confidence 89999999988753
No 57
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.80 E-value=1.8e-18 Score=171.63 Aligned_cols=194 Identities=20% Similarity=0.229 Sum_probs=119.3
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCC--
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 409 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~r-- 409 (635)
+||+|+ ||+.. +-.++.++|+.+|+++.+. + . + +.+.++|||++|||....
T Consensus 1 ~~~~v~-~~~~~--~~~~~~~~l~~~G~~~~~~------~--~---------~-------~~~~~~d~iii~G~~~~~~~ 53 (200)
T PRK13143 1 MMIVII-DYGVG--NLRSVSKALERAGAEVVIT------S--D---------P-------EEILDADGIVLPGVGAFGAA 53 (200)
T ss_pred CeEEEE-ECCCc--cHHHHHHHHHHCCCeEEEE------C--C---------H-------HHHccCCEEEECCCCCHHHH
Confidence 478999 68743 4589999999999875542 1 0 0 346789999999853221
Q ss_pred --cchhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCcee
Q 006689 410 --GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRR 487 (635)
Q Consensus 410 --g~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~ 487 (635)
..+...+.++.+.++++|+||||+|||+|+.++.... ..+.+ .-.+..+..........+ .|.++
T Consensus 54 ~~~~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~~~~g~-~~~~l------g~~~g~v~~~~~~~~~~~------~g~~~ 120 (200)
T PRK13143 54 MENLSPLRDVILEAARSGKPFLGICLGMQLLFESSEEGG-GVRGL------GLFPGRVVRFPAGVKVPH------MGWNT 120 (200)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhhhccCC-CCCCc------ceeeEEEEEcCCCCCCCe------ecceE
Confidence 1245677888888999999999999999986531100 00000 000011111000001122 24456
Q ss_pred EEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCC
Q 006689 488 TYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPG 567 (635)
Q Consensus 488 v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~ 567 (635)
+.+..++.++.++ . ...+ .+.|+|.+.+ +.++.++++++++..+++.... .+ ++|+|||||+.. +
T Consensus 121 v~~~~~~~l~~~l-~-~~~~--~~~Hs~~~~~-------~~~~~~la~~~~~~~~~~~~~~-~~-~~gvQfHPE~~~-~- 185 (200)
T PRK13143 121 VKVVKDCPLFEGI-D-GEYV--YFVHSYYAYP-------DDEDYVVATTDYGIEFPAAVCN-DN-VFGTQFHPEKSG-E- 185 (200)
T ss_pred EEEcCCChhhccC-C-CcEE--EEEeeeeeCC-------CCcceEEEEEcCCCEEEEEEEc-CC-EEEEeCCCccch-H-
Confidence 6665553455455 2 2223 3567887753 3457889998887645555443 34 689999999874 2
Q ss_pred CchHHHHHHHHHH
Q 006689 568 KPSPLFLGLIAAA 580 (635)
Q Consensus 568 ~p~pLF~~Fv~aa 580 (635)
....+|++|++.+
T Consensus 186 ~g~~i~~~f~~~~ 198 (200)
T PRK13143 186 TGLKILENFVELI 198 (200)
T ss_pred HHHHHHHHHHHHH
Confidence 4678999999876
No 58
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.79 E-value=7.7e-19 Score=173.78 Aligned_cols=176 Identities=21% Similarity=0.245 Sum_probs=110.2
Q ss_pred EEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCc--c
Q 006689 334 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG--V 411 (635)
Q Consensus 334 IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg--~ 411 (635)
|+|+ ||+.. +..|+.+||++.|+++.+ +.. + +.+.++|+||+||+ |+.. .
T Consensus 2 i~ii-dyg~g--N~~s~~~al~~~g~~~~~------v~~-----------~-------~~l~~~D~lIlPG~-g~~~~~~ 53 (192)
T PRK13142 2 IVIV-DYGLG--NISNVKRAIEHLGYEVVV------SNT-----------S-------KIIDQAETIILPGV-GHFKDAM 53 (192)
T ss_pred EEEE-EcCCc--cHHHHHHHHHHcCCCEEE------EeC-----------H-------HHhccCCEEEECCC-CCHHHHH
Confidence 8899 79865 899999999998876543 321 1 45678999999985 3321 1
Q ss_pred -----hhHHHHHHHHHHcCCCEEEEehhHHHHHHHH-hcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCc
Q 006689 412 -----QGKILAAKYAREHRIPYLGICLGMQVAVIEF-ARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGS 485 (635)
Q Consensus 412 -----eg~i~air~are~~iP~LGICLGmQllaie~-GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~ 485 (635)
.+..++++. ..++|+||||+|||+|+-.. -+.+-+|. -.+..|..+-++.+++|+||+..-
T Consensus 54 ~~L~~~gl~~~i~~--~~g~PvlGIClGmQlL~~~~~eg~~~GLg---------ll~~~V~rf~~~~~vph~GWn~~~-- 120 (192)
T PRK13142 54 SEIKRLNLNAILAK--NTDKKMIGICLGMQLMYEHSDEGDASGLG---------FIPGNISRIQTEYPVPHLGWNNLV-- 120 (192)
T ss_pred HHHHHCCcHHHHHH--hCCCeEEEECHHHHHHhhhcccCCcCccC---------ceeEEEEECCCCCCCCcccccccC--
Confidence 234556665 46899999999999998542 01111110 123444444333467999996421
Q ss_pred eeEEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCC-eEEEEEeCCCCcEEEEcccCCCcC
Q 006689 486 RRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQ-RMEIVELPNHPYFIGVQFHPEYKS 564 (635)
Q Consensus 486 ~~v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~-~vE~iE~~~~p~fvGVQFHPE~ss 564 (635)
...+++. -+.++-|+|.+. . +.. +.+.+..|. .+.+++ +..++|+|||||++.
T Consensus 121 ------~~~~l~~--------~~~yFVhSy~v~--~-----~~~--v~~~~~yg~~~~~~v~---~~n~~g~QFHPEkS~ 174 (192)
T PRK13142 121 ------SKHPMLN--------QDVYFVHSYQAP--M-----SEN--VIAYAQYGADIPAIVQ---FNNYIGIQFHPEKSG 174 (192)
T ss_pred ------CCCcccc--------cEEEEECCCeEC--C-----CCC--EEEEEECCCeEEEEEE---cCCEEEEecCcccCc
Confidence 1112221 245788999983 1 122 344444444 344443 233689999999977
Q ss_pred CCCCchHHHHHHHH
Q 006689 565 RPGKPSPLFLGLIA 578 (635)
Q Consensus 565 ~p~~p~pLF~~Fv~ 578 (635)
. .+..++++|++
T Consensus 175 ~--~G~~ll~nf~~ 186 (192)
T PRK13142 175 T--YGLQILRQAIQ 186 (192)
T ss_pred H--hHHHHHHHHHh
Confidence 4 47899999965
No 59
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.79 E-value=2.2e-18 Score=179.01 Aligned_cols=175 Identities=23% Similarity=0.290 Sum_probs=108.8
Q ss_pred HHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCc----chhHHHHHHHHHHc
Q 006689 349 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG----VQGKILAAKYAREH 424 (635)
Q Consensus 349 SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg----~eg~i~air~are~ 424 (635)
|.+++++.+|+.+. +.+++++. + ...+.+..+||||+|||+-+.. ..-....++.|.+.
T Consensus 24 ~Yv~~l~~aG~~vv----pi~~~~~~---~----------~l~~~l~~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~ 86 (273)
T cd01747 24 SYVKFLESAGARVV----PIWINESE---E----------YYDKLFKSINGILFPGGAVDIDTSGYARTAKIIYNLALER 86 (273)
T ss_pred HHHHHHHHCCCeEE----EEEeCCcH---H----------HHHHHHhhCCEEEECCCCCcCCccccchHHHHHHHHHHHh
Confidence 67899999998754 34555321 1 1235578999999999974431 22234445666655
Q ss_pred C-----CCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEEecC---Cch
Q 006689 425 R-----IPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK---DCK 496 (635)
Q Consensus 425 ~-----iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~---~sl 496 (635)
+ +|+||||||||+|+.++|+++..+.. + ...|+ ..++.+.+. +.+
T Consensus 87 ~~~g~~~Pv~GiClG~QlL~~~~gg~~~~~~~-----~-----------------~~~~~-----~~~l~~t~~~~~s~l 139 (273)
T cd01747 87 NDAGDYFPVWGTCLGFELLTYLTSGETLLLEA-----T-----------------EATNS-----ALPLNFTEDALQSRL 139 (273)
T ss_pred hhcCCCCcEEEEcHHHHHHHHHhCCCccccCC-----C-----------------ccccc-----eEEEEEccccccChh
Confidence 3 99999999999999999886532111 1 01122 233333321 122
Q ss_pred hhhccCC-----ceeEEEEeeeeeeeChhhhhh---hcCCCeEEEEEeCC--CC-eEEEEEeCCCCcEEEEcccCCCcCC
Q 006689 497 SAKLYGN-----RTFIDERHRHRYEVNPDMIAR---LENAGLSFTGKDET--SQ-RMEIVELPNHPYFIGVQFHPEYKSR 565 (635)
Q Consensus 497 l~~iyg~-----~~~I~erHrHrYeVnp~~v~~---Le~~Gl~~sa~s~d--g~-~vE~iE~~~~p~fvGVQFHPE~ss~ 565 (635)
+..+... ......+|+|+|.+.++.... | +..+++++++.| |. .+++++++++|+ +|+|||||++..
T Consensus 140 F~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~l-~~~~~vla~~~d~~g~~fis~ie~~~~pi-~gvQFHPEks~f 217 (273)
T cd01747 140 FKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLL-SDFFNVLTTNDDWNGVEFISTVEAYKYPI-YGVQWHPEKNAF 217 (273)
T ss_pred hhcCCHHHHHHHhcccHHHhhcccccCHhhccccccc-ccceEEEEEEecCCCceEEEEEEecCCce-EEEecCCCcccc
Confidence 3222100 112235789999998766432 2 345788898765 43 578999999995 699999999876
Q ss_pred CCCc
Q 006689 566 PGKP 569 (635)
Q Consensus 566 p~~p 569 (635)
.+.+
T Consensus 218 ew~~ 221 (273)
T cd01747 218 EWKK 221 (273)
T ss_pred cccc
Confidence 6553
No 60
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.77 E-value=1.3e-17 Score=170.22 Aligned_cols=181 Identities=19% Similarity=0.208 Sum_probs=120.0
Q ss_pred CccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 006689 330 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 409 (635)
Q Consensus 330 ~~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~r 409 (635)
.+++|.++-+|..- .-.++.+.|+..|.++.+. .....+. .| +.+.++||+||+||+++.
T Consensus 6 ~~~~vlvi~h~~~~--~~g~l~~~l~~~g~~~~v~----~~~~~~~-------~p-------~~l~~~dgvii~Ggp~~~ 65 (239)
T PRK06490 6 DKRPVLIVLHQERS--TPGRVGQLLQERGYPLDIR----RPRLGDP-------LP-------DTLEDHAGAVIFGGPMSA 65 (239)
T ss_pred CCceEEEEecCCCC--CChHHHHHHHHCCCceEEE----eccCCCC-------CC-------CcccccCEEEEECCCCCC
Confidence 45789988666522 3456788888888876652 1111111 01 346789999999998875
Q ss_pred c-----chhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccC
Q 006689 410 G-----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLG 484 (635)
Q Consensus 410 g-----~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG 484 (635)
. +...++.++.+.+.++|+||||+|||+|+.++|++|.+.+. | ....|
T Consensus 66 ~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~~~--------------------------G-~~e~G 118 (239)
T PRK06490 66 NDPDDFIRREIDWISVPLKENKPFLGICLGAQMLARHLGARVAPHPD--------------------------G-RVEIG 118 (239)
T ss_pred CCCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHcCCEeecCCC--------------------------C-CCccc
Confidence 2 23356778888889999999999999999999999864321 1 11223
Q ss_pred ceeEEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcC
Q 006689 485 SRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKS 564 (635)
Q Consensus 485 ~~~v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss 564 (635)
.+++.+.+....+... .. ..+|-|++.+ .+ +.|+.++|.++++. ++++++.++ ++|+|||||++
T Consensus 119 ~~~i~~~~~~~~~~~~---~~--~~~~~H~d~~------~l-P~~~~~LA~s~~~~-~qa~~~~~~--v~g~QfHPE~~- 182 (239)
T PRK06490 119 YYPLRPTEAGRALMHW---PE--MVYHWHREGF------DL-PAGAELLATGDDFP-NQAFRYGDN--AWGLQFHPEVT- 182 (239)
T ss_pred eEEeEECCCcccccCC---CC--EEEEECCccc------cC-CCCCEEEEeCCCCC-eEEEEeCCC--EEEEeeCccCC-
Confidence 4556655432322221 11 2345566542 23 77899999998887 899999764 68999999987
Q ss_pred CCCCchHHHHHHHH
Q 006689 565 RPGKPSPLFLGLIA 578 (635)
Q Consensus 565 ~p~~p~pLF~~Fv~ 578 (635)
..++..++.
T Consensus 183 -----~~~~~~~i~ 191 (239)
T PRK06490 183 -----RAMMHRWVV 191 (239)
T ss_pred -----HHHHHHHHH
Confidence 345566654
No 61
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.77 E-value=4.8e-18 Score=173.03 Aligned_cols=140 Identities=21% Similarity=0.267 Sum_probs=97.0
Q ss_pred ccCCCEEEECCCCCCCc-----chhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeee
Q 006689 394 LKGADGILVPGGFGNRG-----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIF 468 (635)
Q Consensus 394 L~~~DGIllPGGfG~rg-----~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~ 468 (635)
+.++|||||+||+.+.. .....+.++.+.+.++|+||||+|||+|+.++|++|..-+.
T Consensus 52 ~~~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~----------------- 114 (237)
T PRK09065 52 PDDFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHALGGEVGYNPA----------------- 114 (237)
T ss_pred hhhcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHHcCCccccCCC-----------------
Confidence 56789999999987532 24567788888889999999999999999999999853110
Q ss_pred CCCCCcCcCCCccccCceeEEEecC---CchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEE
Q 006689 469 MPEGSKTHMGGTMRLGSRRTYFQIK---DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIV 545 (635)
Q Consensus 469 mpe~~~~h~GgtmrLG~~~v~l~~~---~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~i 545 (635)
| ...|.+++.+.+. +.++..+. +...+ .+.|+++|. .+ +.|++++|+++++. ++++
T Consensus 115 ---------g--~e~G~~~v~~~~~~~~~~l~~~~~-~~~~v--~~~H~d~v~-----~l-p~~~~~la~s~~~~-iqa~ 173 (237)
T PRK09065 115 ---------G--RESGTVTVELHPAAADDPLFAGLP-AQFPA--HLTHLQSVL-----RL-PPGAVVLARSAQDP-HQAF 173 (237)
T ss_pred ---------C--CccceEEEEEccccccChhhhcCC-ccCcE--eeehhhhhh-----hC-CCCCEEEEcCCCCC-eeEE
Confidence 1 1123456665442 13444432 23333 445665543 34 78999999998887 9999
Q ss_pred EeCCCCcEEEEcccCCCcCCCCCchHHHHHHHHH
Q 006689 546 ELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLIAA 579 (635)
Q Consensus 546 E~~~~p~fvGVQFHPE~ss~p~~p~pLF~~Fv~a 579 (635)
+++++ ++|+|||||+++ ..+..+++.
T Consensus 174 ~~~~~--i~gvQfHPE~~~------~~~~~~~~~ 199 (237)
T PRK09065 174 RYGPH--AWGVQFHPEFTA------HIMRAYLRA 199 (237)
T ss_pred EeCCC--EEEEEeCCcCCH------HHHHHHHHh
Confidence 99763 679999999752 345555543
No 62
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.77 E-value=8.6e-18 Score=163.91 Aligned_cols=137 Identities=23% Similarity=0.249 Sum_probs=98.3
Q ss_pred hccCCCEEEECCCCCCC---c---chhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCee
Q 006689 393 LLKGADGILVPGGFGNR---G---VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCV 466 (635)
Q Consensus 393 ~L~~~DGIllPGGfG~r---g---~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi 466 (635)
.+.++|||++|||+.+. . .....+.++++.++++|+||||+|||+++.++|++|...+.
T Consensus 43 ~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~~~--------------- 107 (188)
T cd01741 43 DLDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARALGGKVGRNPK--------------- 107 (188)
T ss_pred CcccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHHhCCEEecCCC---------------
Confidence 46789999999998764 1 24577888999999999999999999999999998854221
Q ss_pred eeCCCCCcCcCCCccccCceeEEEecCC---chhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEE
Q 006689 467 IFMPEGSKTHMGGTMRLGSRRTYFQIKD---CKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRME 543 (635)
Q Consensus 467 ~~mpe~~~~h~GgtmrLG~~~v~l~~~~---sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE 543 (635)
| ...|.+++.+.+.. .++..+. ..+...+.|+++|.. + +.|++++|+++++. ++
T Consensus 108 -----------~--~~~g~~~v~~~~~~~~~~l~~~~~---~~~~v~~~H~~~v~~-----l-p~~~~~la~~~~~~-v~ 164 (188)
T cd01741 108 -----------G--WEIGWFPVTLTEAGKADPLFAGLP---DEFPVFHWHGDTVVE-----L-PPGAVLLASSEACP-NQ 164 (188)
T ss_pred -----------c--ceeEEEEEEeccccccCchhhcCC---CcceEEEEeccChhh-----C-CCCCEEeecCCCCC-cc
Confidence 1 11234566665431 2222221 223455678877742 3 67899999998887 99
Q ss_pred EEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHH
Q 006689 544 IVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLI 577 (635)
Q Consensus 544 ~iE~~~~p~fvGVQFHPE~ss~p~~p~pLF~~Fv 577 (635)
+++.+ ..++|+||||| ..+|++|+
T Consensus 165 ~~~~~--~~~~g~QfHPE--------~~~~~~f~ 188 (188)
T cd01741 165 AFRYG--DRALGLQFHPE--------ERLLRNFL 188 (188)
T ss_pred eEEec--CCEEEEccCch--------HHHHhhhC
Confidence 99987 34789999999 56777663
No 63
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.76 E-value=9.1e-18 Score=171.91 Aligned_cols=201 Identities=15% Similarity=0.200 Sum_probs=120.1
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCc-
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 410 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg- 410 (635)
+||+|+. ++.++.++.++|+++|+++.. +.. | +.+.++|||+|||||++.-
T Consensus 2 m~igVLa----~qG~~~e~~~aL~~lG~ev~~------v~~-----------~-------~~L~~~DgLILPGGfs~~~~ 53 (248)
T PLN02832 2 MAIGVLA----LQGSFNEHIAALRRLGVEAVE------VRK-----------P-------EQLEGVSGLIIPGGESTTMA 53 (248)
T ss_pred cEEEEEe----CCCchHHHHHHHHHCCCcEEE------eCC-----------H-------HHhccCCEEEeCCCHHHHHH
Confidence 5899996 444888999999999987543 221 1 4578999999999987531
Q ss_pred ----chhHHHHHHHHHHcCCCEEEEehhHHHHHHHHh------cccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCc
Q 006689 411 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFA------RSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 480 (635)
Q Consensus 411 ----~eg~i~air~are~~iP~LGICLGmQllaie~G------rnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~Ggt 480 (635)
..++.+.++.+.+.++|+||||+|||+|+-..- +..++.-+..... .-....+..+-+..+.+|+||+
T Consensus 54 ~L~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~~~~~~~~~~~~lg~Ldi~v~R--N~~g~qv~sfe~~l~ip~~gwn 131 (248)
T PLN02832 54 KLAERHNLFPALREFVKSGKPVWGTCAGLIFLAERAVGQKEGGQELLGGLDCTVHR--NFFGSQINSFETELPVPELAAS 131 (248)
T ss_pred HHHhhcchHHHHHHHHHcCCCEEEEChhHHHHHHHhcccccCCcceeCCccceEEe--cccCceeEeEEcCCcCCccccc
Confidence 135778888877889999999999999985531 1112221110000 0123344444344567999986
Q ss_pred cc-cCceeEEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCC--CeEEEEEeCCCCcEEEEc
Q 006689 481 MR-LGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETS--QRMEIVELPNHPYFIGVQ 557 (635)
Q Consensus 481 mr-LG~~~v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg--~~vE~iE~~~~p~fvGVQ 557 (635)
.- ....+..+... +.+... + .. .+.-|+|.++++... ...++++.| ..+.+++- ..++|+|
T Consensus 132 ~~~~~~~~~vFira-p~i~~~-~--~~--v~~l~sy~~~~~~~~-------~~~a~~~y~~~~~~~aV~q---gnvlatq 195 (248)
T PLN02832 132 EGGPETFRAVFIRA-PAILSV-G--PG--VEVLAEYPLPSEKAL-------YSSSTDAEGRDKVIVAVKQ---GNLLATA 195 (248)
T ss_pred cccccccceEEecC-CceEeC-C--Cc--EEEEEEecccccccc-------cccccccccCCceEEEEEe---CCEEEEE
Confidence 31 11222333333 222111 1 11 245688876653211 123344433 23444442 3378999
Q ss_pred ccCCCcCCCCCchHHHHHHHHHHhc
Q 006689 558 FHPEYKSRPGKPSPLFLGLIAAACG 582 (635)
Q Consensus 558 FHPE~ss~p~~p~pLF~~Fv~aa~~ 582 (635)
||||+++.. .+++.|++.+..
T Consensus 196 FHPEls~d~----rih~~Fl~~~~~ 216 (248)
T PLN02832 196 FHPELTADT----RWHSYFVKMVSE 216 (248)
T ss_pred ccCccCCcc----HHHHHHHHHHHH
Confidence 999999875 788888888754
No 64
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.76 E-value=1.1e-17 Score=165.35 Aligned_cols=187 Identities=19% Similarity=0.201 Sum_probs=111.7
Q ss_pred EEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcch-
Q 006689 334 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ- 412 (635)
Q Consensus 334 IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~e- 412 (635)
|+|| ||+.. +-.++.++|+..|+++.+. .. + +.++++|+|++|| +|++...
T Consensus 1 ~~~~-~~~~g--n~~~l~~~l~~~g~~v~v~------~~-----------~-------~~l~~~d~lii~G-~~~~~~~~ 52 (196)
T TIGR01855 1 IVII-DYGVG--NLGSVKRALKRVGAEPVVV------KD-----------S-------KEAELADKLILPG-VGAFGAAM 52 (196)
T ss_pred CEEE-ecCCc--HHHHHHHHHHHCCCcEEEE------cC-----------H-------HHhccCCEEEECC-CCCHHHHH
Confidence 5778 68754 7789999999999876653 11 0 2467899999988 3443211
Q ss_pred ----hH-HHHH-HHHHHcCCCEEEEehhHHHHHHHH--hcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccC
Q 006689 413 ----GK-ILAA-KYAREHRIPYLGICLGMQVAVIEF--ARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLG 484 (635)
Q Consensus 413 ----g~-i~ai-r~are~~iP~LGICLGmQllaie~--GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG 484 (635)
.. ++.+ +.+.+.++|+||||+|||+|+-++ ++++-+|.- + ...| ..++....+++|++
T Consensus 53 ~~l~~~~~~~l~~~~~~~~~pvlGiC~G~Qll~~~~~~~~~~~glg~-----~----~~~v-~~~~~~~~~~~g~~---- 118 (196)
T TIGR01855 53 ARLRENGLDLFVELVVRLGKPVLGICLGMQLLFERSEEGGGVPGLGL-----I----KGNV-VKLEARKVPHMGWN---- 118 (196)
T ss_pred HHHHHcCcHHHHHHHHhCCCCEEEECHHHHHhhhccccCCCCCCcce-----e----eEEE-EECCCCCCCcccCe----
Confidence 10 3444 767788999999999999998763 111111100 0 0011 11111122455552
Q ss_pred ceeEEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcC
Q 006689 485 SRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKS 564 (635)
Q Consensus 485 ~~~v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss 564 (635)
.+.....++++..+. ++ ...++.|+|++.+.. +. +++.++++..+.+ .....+ ++|+|||||+..
T Consensus 119 --~~~~~~~~~l~~~l~-~~--~~v~~~Hs~~v~~~~-------~~-~~a~~~~g~~~~~-~~~~~~-i~GvQFHPE~~~ 183 (196)
T TIGR01855 119 --EVHPVKESPLLNGID-EG--AYFYFVHSYYAVCEE-------EA-VLAYADYGEKFPA-AVQKGN-IFGTQFHPEKSG 183 (196)
T ss_pred --eeeeCCCChHHhCCC-CC--CEEEEECeeEecCCC-------Cc-EEEEEcCCcEEEE-EEecCC-EEEEECCCccCc
Confidence 333333435565554 23 344678999986421 22 5666667663443 344555 679999999763
Q ss_pred CCCCchHHHHHHHHH
Q 006689 565 RPGKPSPLFLGLIAA 579 (635)
Q Consensus 565 ~p~~p~pLF~~Fv~a 579 (635)
.....++++|+++
T Consensus 184 --~~g~~ll~~f~~~ 196 (196)
T TIGR01855 184 --KTGLKLLENFLEL 196 (196)
T ss_pred --HhHHHHHHHHHhC
Confidence 3578899999863
No 65
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.76 E-value=2.8e-17 Score=162.87 Aligned_cols=192 Identities=17% Similarity=0.258 Sum_probs=112.9
Q ss_pred cEEEEEeccCCCcchH-HHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCC-
Q 006689 332 VRIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 409 (635)
Q Consensus 332 v~IalVGkY~~l~DaY-~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~r- 409 (635)
+|||++ -+....+.| .++.++|+.+|.++.+ .++.. + +.+.++|+|++|||++..
T Consensus 1 ~~i~vl-~~~~~~~e~~~~~~~~l~~~g~~~~~----~~~~~-----------~-------~~l~~~d~iii~GG~~~~~ 57 (200)
T PRK13527 1 MKIGVL-ALQGDVEEHIDALKRALDELGIDGEV----VEVRR-----------P-------GDLPDCDALIIPGGESTTI 57 (200)
T ss_pred CEEEEE-EECCccHHHHHHHHHHHHhcCCCeEE----EEeCC-----------h-------HHhccCCEEEECCCcHHHH
Confidence 356666 232222233 4667888888876544 33321 1 346789999999998764
Q ss_pred ----cchhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCC-CcCcCCCccccC
Q 006689 410 ----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEG-SKTHMGGTMRLG 484 (635)
Q Consensus 410 ----g~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~-~~~h~GgtmrLG 484 (635)
...+..+.++.+.++++|+||||+|||+|+.++++... +... .+.+-.+|-. .....|+...
T Consensus 58 ~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~~gg~~v--~~~~---------~~~lG~~~~~v~~~~~g~~~~-- 124 (200)
T PRK13527 58 GRLMKREGILDEIKEKIEEGLPILGTCAGLILLAKEVGDDRV--TKTE---------QPLLGLMDVTVKRNAFGRQRD-- 124 (200)
T ss_pred HHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhhhcCCcc--CCCC---------CceeeeeEEEEeeccccCccc--
Confidence 22356788888888999999999999999999877321 1110 1111111100 0001121100
Q ss_pred ceeEEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcC
Q 006689 485 SRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKS 564 (635)
Q Consensus 485 ~~~v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss 564 (635)
..... .++..+ +++ ....+.|++.|. .+ +++++++|.++++ +++++. . .++|+|||||++.
T Consensus 125 ~~~~~-----~~~~~~-~~~--~~~~~~H~~~v~-----~l-p~~~~~la~~~~~--~~a~~~--~-~~~g~QfHPE~~~ 185 (200)
T PRK13527 125 SFEAE-----IDLSGL-DGP--FHAVFIRAPAIT-----KV-GGDVEVLAKLDDR--IVAVEQ--G-NVLATAFHPELTD 185 (200)
T ss_pred cEEEe-----Eecccc-CCc--ceEEEEcccccc-----cc-CCCeEEEEEECCE--EEEEEE--C-CEEEEEeCCCCCC
Confidence 00000 112222 122 233445666653 23 6799999998876 346653 3 3789999999875
Q ss_pred CCCCchHHHHHHHHHHhc
Q 006689 565 RPGKPSPLFLGLIAAACG 582 (635)
Q Consensus 565 ~p~~p~pLF~~Fv~aa~~ 582 (635)
. ..+|++|++++.+
T Consensus 186 ~----~~l~~~f~~~~~~ 199 (200)
T PRK13527 186 D----TRIHEYFLKKVKG 199 (200)
T ss_pred C----CHHHHHHHHHHhc
Confidence 4 5899999998864
No 66
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.75 E-value=1e-17 Score=166.60 Aligned_cols=181 Identities=24% Similarity=0.209 Sum_probs=117.2
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHcc-ccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcc
Q 006689 333 RIAMVGKYTGLSDAYLSILKALLHAS-VDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 411 (635)
Q Consensus 333 ~IalVGkY~~l~DaY~SI~~AL~~ag-~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~ 411 (635)
+|.|+ ++++- ...-|.+.++..| ..+.+ |....+.++ -...++|||+|+|||-+.-.
T Consensus 3 ~ilIl-d~g~q--~~~li~r~~re~g~v~~e~-----~~~~~~~~~--------------~~~~~~~giIlsGgp~sv~~ 60 (198)
T COG0518 3 KILIL-DFGGQ--YLGLIARRLRELGYVYSEI-----VPYTGDAEE--------------LPLDSPDGIIISGGPMSVYD 60 (198)
T ss_pred EEEEE-eCCCc--HhHHHHHHHHHcCCceEEE-----EeCCCCccc--------------ccccCCCEEEEcCCCCCCcc
Confidence 68888 67641 4455677888888 44333 111111110 12346799999999955433
Q ss_pred hh--H---HHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCce
Q 006689 412 QG--K---ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSR 486 (635)
Q Consensus 412 eg--~---i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~ 486 (635)
+. . ...|+.+...++|+||||+|||+|+.++|++|..-+ ..| .|..
T Consensus 61 ~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~lGg~V~~~~---~~E--------------------------~G~~ 111 (198)
T COG0518 61 EDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKALGGKVERGP---KRE--------------------------IGWT 111 (198)
T ss_pred ccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHHhCCEEeccC---CCc--------------------------cceE
Confidence 33 3 444444444455599999999999999999995311 122 3456
Q ss_pred eEEEec-CCchhhhccCCce-eEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcC
Q 006689 487 RTYFQI-KDCKSAKLYGNRT-FIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKS 564 (635)
Q Consensus 487 ~v~l~~-~~sll~~iyg~~~-~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss 564 (635)
++.+.+ .+.++..+.. .. .++..|. +.+.++ +.|++++|.|+... ++++++. .+ ++|+|||||++.
T Consensus 112 ~v~~~~~~~~l~~gl~~-~~~~v~~sH~-------D~v~~l-P~g~~vlA~s~~cp-~qa~~~~-~~-~~gvQFHpEv~~ 179 (198)
T COG0518 112 PVELTEGDDPLFAGLPD-LFTTVFMSHG-------DTVVEL-PEGAVVLASSETCP-NQAFRYG-KR-AYGVQFHPEVTH 179 (198)
T ss_pred EEEEecCccccccCCcc-ccCccccchh-------CccccC-CCCCEEEecCCCCh-hhheecC-Cc-EEEEeeeeEEeH
Confidence 777763 2235555542 33 3555554 566666 89999999988776 8999988 55 579999999987
Q ss_pred CCCCchHHHHHHHH
Q 006689 565 RPGKPSPLFLGLIA 578 (635)
Q Consensus 565 ~p~~p~pLF~~Fv~ 578 (635)
.....++++|..
T Consensus 180 --~~~~~~l~nf~~ 191 (198)
T COG0518 180 --EYGEALLENFAH 191 (198)
T ss_pred --HHHHHHHHHhhh
Confidence 235678888875
No 67
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.75 E-value=3.4e-17 Score=183.86 Aligned_cols=197 Identities=19% Similarity=0.230 Sum_probs=127.0
Q ss_pred ccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCc
Q 006689 331 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 410 (635)
Q Consensus 331 ~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg 410 (635)
..+|++| ||+.. +..|+.++|+.+|+++. |+.. | +.+.++|+|++||| |+.+
T Consensus 6 ~~~i~ii-DyG~G--N~~sl~~al~~~G~~v~------~v~~-----------~-------~~l~~~D~lIlpG~-gs~~ 57 (538)
T PLN02617 6 DSEVTLL-DYGAG--NVRSVRNAIRHLGFTIK------DVQT-----------P-------EDILNADRLIFPGV-GAFG 57 (538)
T ss_pred CCeEEEE-ECCCC--CHHHHHHHHHHCCCeEE------EECC-----------h-------hhhccCCEEEECCC-CCHH
Confidence 4689999 79865 78999999999997753 3321 1 34678999999884 3332
Q ss_pred c-------hhHHHHHHHHHHcCCCEEEEehhHHHHHHHHh--cccccccCCCCCccCCCCCCCeeeeC--CCCCcCcCCC
Q 006689 411 V-------QGKILAAKYAREHRIPYLGICLGMQVAVIEFA--RSVLNLRDANSTEFDPNTKNPCVIFM--PEGSKTHMGG 479 (635)
Q Consensus 411 ~-------eg~i~air~are~~iP~LGICLGmQllaie~G--rnV~glkda~S~Ef~~~~~~pvi~~m--pe~~~~h~Gg 479 (635)
. .+..+.++.+.+.++|+||||+|||+|+.++. +.+.++.- .+..+..+- ++...+|+||
T Consensus 58 ~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~~~E~g~~~glg~---------l~G~v~~~~~~~~~~vp~iGw 128 (538)
T PLN02617 58 SAMDVLNNRGMAEALREYIQNDRPFLGICLGLQLLFESSEENGPVEGLGV---------IPGVVGRFDSSNGLRVPHIGW 128 (538)
T ss_pred HHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhhhhhcCCccCccc---------ccceEEECCccCCCCCCeecc
Confidence 1 34677888888899999999999999986541 12222210 111222211 1124578888
Q ss_pred ccccCceeEEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCC-CeEEEEEeCCCCcEEEEcc
Q 006689 480 TMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETS-QRMEIVELPNHPYFIGVQF 558 (635)
Q Consensus 480 tmrLG~~~v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg-~~vE~iE~~~~p~fvGVQF 558 (635)
+ ++...++++++..+ + .. ..+|.|+|.+.+.. ..+..+.++++.+ ..+++++.. +++|+||
T Consensus 129 ~------~V~~~~~spL~~~l-~-~~--~vy~vHSy~v~~~p-----~~~~~v~a~~~~g~~~IaAI~~g---nI~GVQF 190 (538)
T PLN02617 129 N------ALQITKDSELLDGV-G-GR--HVYFVHSYRATPSD-----ENKDWVLATCNYGGEFIASVRKG---NVHAVQF 190 (538)
T ss_pred e------EEEecCCChhHhcC-C-Cc--EEEEEeEEEEEecC-----CCCcEEEEEEccCCCcEEEEEeC---CEEEEEc
Confidence 4 44555554566555 2 22 24578999864311 2233444555432 358999863 4789999
Q ss_pred cCCCcCCCCCchHHHHHHHHHHhcch
Q 006689 559 HPEYKSRPGKPSPLFLGLIAAACGQL 584 (635)
Q Consensus 559 HPE~ss~p~~p~pLF~~Fv~aa~~~~ 584 (635)
|||++. .....+|++|++.....+
T Consensus 191 HPE~s~--~~G~~L~~nFl~~~~~~~ 214 (538)
T PLN02617 191 HPEKSG--ATGLSILRRFLEPKSSAT 214 (538)
T ss_pred CCccCc--hhHHHHHHHHHHhhhhhh
Confidence 999986 246799999998877433
No 68
>PRK05665 amidotransferase; Provisional
Probab=99.75 E-value=4.1e-17 Score=166.68 Aligned_cols=133 Identities=16% Similarity=0.160 Sum_probs=92.8
Q ss_pred hccCCCEEEECCCCCCC-----cchhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeee
Q 006689 393 LLKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVI 467 (635)
Q Consensus 393 ~L~~~DGIllPGGfG~r-----g~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~ 467 (635)
.+.++|||||+||+.+. .+....+.++.+.++++|+||||+|||+|+.++|++|..-+
T Consensus 54 ~~~~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~----------------- 116 (240)
T PRK05665 54 DDEKFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERAS----------------- 116 (240)
T ss_pred CcccCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCC-----------------
Confidence 35689999999997664 23456677888888899999999999999999999985321
Q ss_pred eCCCCCcCcCCCccccCceeEEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEe
Q 006689 468 FMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVEL 547 (635)
Q Consensus 468 ~mpe~~~~h~GgtmrLG~~~v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~ 547 (635)
.|+ ..|.+++.+.+...++.... ....+. +.|+-+ +..| +.|++++|.|+... +++++.
T Consensus 117 ---------~G~--e~G~~~~~~~~~~~~~~~~~-~~~~~~--~~H~D~-----V~~L-P~ga~~La~s~~~~-~q~~~~ 175 (240)
T PRK05665 117 ---------QGW--GVGIHRYQLAAHAPWMSPAV-TELTLL--ISHQDQ-----VTAL-PEGATVIASSDFCP-FAAYHI 175 (240)
T ss_pred ---------CCc--ccceEEEEecCCCccccCCC-CceEEE--EEcCCe-----eeeC-CCCcEEEEeCCCCc-EEEEEe
Confidence 122 12344555544323333322 233343 455544 3445 78999999998877 999998
Q ss_pred CCCCcEEEEcccCCCcCC
Q 006689 548 PNHPYFIGVQFHPEYKSR 565 (635)
Q Consensus 548 ~~~p~fvGVQFHPE~ss~ 565 (635)
.++ ++|+|||||++..
T Consensus 176 ~~~--~~g~QfHPE~~~~ 191 (240)
T PRK05665 176 GDQ--VLCFQGHPEFVHD 191 (240)
T ss_pred CCC--EEEEecCCcCcHH
Confidence 654 6799999999865
No 69
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.75 E-value=2.9e-17 Score=167.15 Aligned_cols=172 Identities=19% Similarity=0.182 Sum_probs=114.8
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCC--
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-- 409 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~r-- 409 (635)
.+|.++ ...... .-.++.++|+..|..+.+. .....+... ..+.++|||||+||+.+.
T Consensus 3 ~~ilvi-qh~~~e-~~g~i~~~L~~~g~~~~v~----~~~~~~~~~--------------~~~~~~d~lii~Ggp~~~~d 62 (234)
T PRK07053 3 KTAVAI-RHVAFE-DLGSFEQVLGARGYRVRYV----DVGVDDLET--------------LDALEPDLLVVLGGPIGVYD 62 (234)
T ss_pred ceEEEE-ECCCCC-CChHHHHHHHHCCCeEEEE----ecCCCccCC--------------CCccCCCEEEECCCCCCCCC
Confidence 357777 454443 5678899999999776542 222222100 235679999999997542
Q ss_pred -----cchhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccC
Q 006689 410 -----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLG 484 (635)
Q Consensus 410 -----g~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG 484 (635)
.....++.++.+.+.++|+||||+|||+|+.++|++|..-+ ..++|
T Consensus 63 ~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~-----------------------------~~e~G 113 (234)
T PRK07053 63 DELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARALGARVYPGG-----------------------------QKEIG 113 (234)
T ss_pred CCcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHHcCCcEecCC-----------------------------CCeEe
Confidence 23567788888889999999999999999999999984310 12234
Q ss_pred ceeEEEecC--CchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCC
Q 006689 485 SRRTYFQIK--DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEY 562 (635)
Q Consensus 485 ~~~v~l~~~--~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ 562 (635)
..++.+.+. ...+..+. .. ....|.|++.+. + +.|.+.+|.++... +++++..++ ++|+|||||+
T Consensus 114 ~~~i~~t~~g~~~pl~~~~-~~--~~~~~~H~d~~~------l-P~ga~~La~s~~~~-~qaf~~g~~--~~g~QfHpE~ 180 (234)
T PRK07053 114 WAPLTLTDAGRASPLRHLG-AG--TPVLHWHGDTFD------L-PEGATLLASTPACR-HQAFAWGNH--VLALQFHPEA 180 (234)
T ss_pred EEEEEEeccccCChhhcCC-Cc--ceEEEEeCCEEe------c-CCCCEEEEcCCCCC-eeEEEeCCC--EEEEeeCccC
Confidence 456665442 11233332 22 334566766552 3 78999999998776 899998543 6799999998
Q ss_pred cCC
Q 006689 563 KSR 565 (635)
Q Consensus 563 ss~ 565 (635)
++.
T Consensus 181 ~~~ 183 (234)
T PRK07053 181 RED 183 (234)
T ss_pred CHH
Confidence 753
No 70
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.75 E-value=4e-17 Score=160.92 Aligned_cols=182 Identities=16% Similarity=0.213 Sum_probs=113.5
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCc-
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 410 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg- 410 (635)
++|+|+.- +.+|.|..++|+.+|+.+.. ++. + +.+.++|||++|||++..-
T Consensus 2 m~~~i~~~----~g~~~~~~~~l~~~g~~~~~------~~~-----------~-------~~l~~~dgiii~GG~~~~~~ 53 (189)
T PRK13525 2 MKIGVLAL----QGAVREHLAALEALGAEAVE------VRR-----------P-------EDLDEIDGLILPGGESTTMG 53 (189)
T ss_pred CEEEEEEc----ccCHHHHHHHHHHCCCEEEE------eCC-----------h-------hHhccCCEEEECCCChHHHH
Confidence 57888842 23788889999998877543 221 0 3467899999999976431
Q ss_pred ----chhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCce
Q 006689 411 ----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSR 486 (635)
Q Consensus 411 ----~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~ 486 (635)
.....++++.+.++++|+||||+|+|+|+-++++.. .+ +..- .+..+. . ...|+. .|..
T Consensus 54 ~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~gg~~--~~-----~lg~-~~~~v~-~------~~~g~~--~g~~ 116 (189)
T PRK13525 54 KLLRDFGLLEPLREFIASGLPVFGTCAGMILLAKEIEGYE--QE-----HLGL-LDITVR-R------NAFGRQ--VDSF 116 (189)
T ss_pred HHHHhccHHHHHHHHHHCCCeEEEECHHHHHHHhhcccCC--CC-----ceee-EEEEEE-E------ccCCCc--eeeE
Confidence 123457788888899999999999999998887741 00 0000 000000 0 011221 1111
Q ss_pred eEEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCC
Q 006689 487 RTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRP 566 (635)
Q Consensus 487 ~v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p 566 (635)
... .++..+ +++ ...++.|+++|. .+ +++++++|.++ +. +++++. . .++|+|||||++..
T Consensus 117 ~~~-----~~~~~~-~~~--~~~~~~H~d~v~-----~l-p~~~~vlA~~~-~~-~~~~~~--~-~~~g~QfHPE~~~~- 176 (189)
T PRK13525 117 EAE-----LDIKGL-GEP--FPAVFIRAPYIE-----EV-GPGVEVLATVG-GR-IVAVRQ--G-NILATSFHPELTDD- 176 (189)
T ss_pred Eec-----ccccCC-CCC--eEEEEEeCceee-----cc-CCCcEEEEEcC-CE-EEEEEe--C-CEEEEEeCCccCCC-
Confidence 111 222222 122 344667776653 34 67899999975 33 566654 2 47899999999764
Q ss_pred CCchHHHHHHHHHHh
Q 006689 567 GKPSPLFLGLIAAAC 581 (635)
Q Consensus 567 ~~p~pLF~~Fv~aa~ 581 (635)
..||++|++.|.
T Consensus 177 ---~~~~~~f~~~~~ 188 (189)
T PRK13525 177 ---TRVHRYFLEMVK 188 (189)
T ss_pred ---chHHHHHHHHhh
Confidence 589999998875
No 71
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.73 E-value=7.4e-17 Score=164.92 Aligned_cols=132 Identities=20% Similarity=0.220 Sum_probs=91.5
Q ss_pred hccCCCEEEECCCCCCCcc------h-------hHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCC
Q 006689 393 LLKGADGILVPGGFGNRGV------Q-------GKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDP 459 (635)
Q Consensus 393 ~L~~~DGIllPGGfG~rg~------e-------g~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~ 459 (635)
.+.++|||||+||+++... . ....+++.+.++++|+||||+|||+|+.++|++|.+ . .
T Consensus 48 ~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~-~--~------ 118 (242)
T PRK07567 48 DLDDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDR-T--Y------ 118 (242)
T ss_pred CHhhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEec-C--C------
Confidence 3567899999999866421 1 123466777789999999999999999999999853 1 0
Q ss_pred CCCCCeeeeCCCCCcCcCCCccccCceeEEEecC---CchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEe
Q 006689 460 NTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK---DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKD 536 (635)
Q Consensus 460 ~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~---~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s 536 (635)
| ...|.+++.+.+. ++++..+. .. ....|.|++.| ..+ +.|++++|++
T Consensus 119 ------------------g--~e~G~~~v~l~~~g~~~~l~~~~~-~~--~~~~~~H~d~V-----~~l-p~~~~vlA~s 169 (242)
T PRK07567 119 ------------------G--EPVGAVTVSLTDAGRADPLLAGLP-DT--FTAFVGHKEAV-----SAL-PPGAVLLATS 169 (242)
T ss_pred ------------------C--CcCccEEEEECCccCCChhhcCCC-Cc--eEEEeehhhhh-----hhC-CCCCEEEEeC
Confidence 1 1123456665442 13444443 23 33445676655 334 7899999999
Q ss_pred CCCCeEEEEEeCCCCcEEEEcccCCCcCC
Q 006689 537 ETSQRMEIVELPNHPYFIGVQFHPEYKSR 565 (635)
Q Consensus 537 ~dg~~vE~iE~~~~p~fvGVQFHPE~ss~ 565 (635)
+++. ++++++.++ ++|+|||||++..
T Consensus 170 ~~~~-vqa~~~~~~--~~gvQfHPE~~~~ 195 (242)
T PRK07567 170 PTCP-VQMFRVGEN--VYATQFHPELDAD 195 (242)
T ss_pred CCCC-EEEEEeCCC--EEEEEeCCcCCHH
Confidence 8876 999998754 6799999998643
No 72
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.71 E-value=2.1e-16 Score=159.94 Aligned_cols=191 Identities=24% Similarity=0.339 Sum_probs=121.7
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCC--C
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN--R 409 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~--r 409 (635)
+||+|+ +|... ..-.++.++|+.+|+.+.. .|.+.. .+.++|+|+||||+.. .
T Consensus 1 ~~v~Vl-~~~G~-n~~~~~~~al~~~G~~~~~----i~~~~~-------------------~l~~~d~lilpGG~~~~d~ 55 (227)
T TIGR01737 1 MKVAVI-RFPGT-NCDRDTVYALRLLGVDAEI----VWYEDG-------------------SLPDYDGVVLPGGFSYGDY 55 (227)
T ss_pred CeEEEE-eCCCc-CcHHHHHHHHHHCCCeEEE----EecCCC-------------------CCCCCCEEEECCCCccccc
Confidence 479999 67533 1346788999999987543 243211 2567899999999742 1
Q ss_pred -------cchhHHHHHHHHHHcCCCEEEEehhHHHHHHH--HhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCc
Q 006689 410 -------GVQGKILAAKYAREHRIPYLGICLGMQVAVIE--FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 480 (635)
Q Consensus 410 -------g~eg~i~air~are~~iP~LGICLGmQllaie--~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~Ggt 480 (635)
.....++.++.+.+.++|+||||.|+|+|+.+ +++.+.. ..+.+|
T Consensus 56 ~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~l~~---n~~~~~----------------------- 109 (227)
T TIGR01737 56 LRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGALLP---NDSLRF----------------------- 109 (227)
T ss_pred ccccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCceee---cCCCce-----------------------
Confidence 12336677888888999999999999999853 3332210 011111
Q ss_pred cccCce--eEEEecCCchh-hhccCCceeEEE--Ee-eeeeeeChhhhhhhcCCCeEEEE-Ee----------CCC--Ce
Q 006689 481 MRLGSR--RTYFQIKDCKS-AKLYGNRTFIDE--RH-RHRYEVNPDMIARLENAGLSFTG-KD----------ETS--QR 541 (635)
Q Consensus 481 mrLG~~--~v~l~~~~sll-~~iyg~~~~I~e--rH-rHrYeVnp~~v~~Le~~Gl~~sa-~s----------~dg--~~ 541 (635)
+.. .+++.++.+.+ ..+- ....++. .| .|||.++++.+++|++.+..+.- .+ ++| ..
T Consensus 110 ---~~~~~~~~v~~~~~~~~~~~~-~g~~~~~pi~H~eG~y~~~~~~l~~l~~~~~i~~~y~d~~g~~~~~~npngs~~~ 185 (227)
T TIGR01737 110 ---ICRWVYLRVENADTIFTKNYK-KGEVIRIPIAHGEGRYYADDETLARLESNDQVVFRYCDEDGDVAEEANPNGSVGN 185 (227)
T ss_pred ---EEEeEEEEECCCCChhhccCC-CCCEEEEEeEcCCcCeEcCHHHHHHHHHCCcEEEEEECCCCCCCCCCCCCCCHHH
Confidence 111 22222222333 3332 1122322 45 56999999988888777764433 23 555 25
Q ss_pred EEEEEeCCCCcEEEEcccCCCcC----CCCCchHHHHHHHH
Q 006689 542 MEIVELPNHPYFIGVQFHPEYKS----RPGKPSPLFLGLIA 578 (635)
Q Consensus 542 vE~iE~~~~p~fvGVQFHPE~ss----~p~~p~pLF~~Fv~ 578 (635)
|+++..++.+. +|+|||||... .+.++..+|++|++
T Consensus 186 i~~i~~~~~~~-~g~~~HpE~~~~~~~~~~~g~~~~~~~~~ 225 (227)
T TIGR01737 186 IAGIVNERGNV-LGMMPHPERASEKLLGGDDGLKLFESLVE 225 (227)
T ss_pred HcccCCCCCCE-EEEecCchhhcccccCCcccHHHHHHHHh
Confidence 88899999985 69999999984 34478899999975
No 73
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.71 E-value=1.2e-16 Score=152.33 Aligned_cols=195 Identities=18% Similarity=0.245 Sum_probs=128.5
Q ss_pred EEEEEeccCCCcchHHHHHHHH-HHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcc
Q 006689 333 RIAMVGKYTGLSDAYLSILKAL-LHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 411 (635)
Q Consensus 333 ~IalVGkY~~l~DaY~SI~~AL-~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~ 411 (635)
.|.++++|.++. .++.+.| ...|+.+.+ ..-| +++-+. -...+++++++++|||.|..
T Consensus 20 piv~IDNYDSFT---~Nv~qYL~~e~g~~~~V----yRND--eiTV~E------------l~~~NP~~LliSPGPG~P~D 78 (223)
T KOG0026|consen 20 PIIVIDNYDSFT---YNLCQYLMGELGCHFEV----YRND--ELTVEE------------LKRKNPRGLLISPGPGTPQD 78 (223)
T ss_pred CEEEEecccchh---HHHHHHhhhccCccEEE----EecC--cccHHH------------HhhcCCCeEEecCCCCCCcc
Confidence 588999998774 4777777 445555544 2322 221100 12358999999999999986
Q ss_pred hhH-HHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEE
Q 006689 412 QGK-ILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYF 490 (635)
Q Consensus 412 eg~-i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l 490 (635)
.|. .+++++. .-++|+||||+|.|++.-+||++|.. +-|. ++. |- ..++.-
T Consensus 79 sGIs~~~i~~f-~~~iP~fGvCMGlQCi~e~fGGkv~~------a~~~------i~H----------GK-----~S~i~~ 130 (223)
T KOG0026|consen 79 SGISLQTVLEL-GPLVPLFGVCMGLQCIGEAFGGKIVR------SPFG------VMH----------GK-----SSMVHY 130 (223)
T ss_pred ccchHHHHHHh-CCCCceeeeehhhhhhhhhhCcEEec------cCcc------eee----------cc-----cccccc
Confidence 554 4556655 45899999999999999999999842 1121 110 10 001110
Q ss_pred ec-C-CchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCC
Q 006689 491 QI-K-DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGK 568 (635)
Q Consensus 491 ~~-~-~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~ 568 (635)
.. + ..++..+. +.. +..|+ |+.+...+.++ ..-+++++|.+||. +++.+++.+..+-|||||||.--.. .
T Consensus 131 D~~~~~G~f~g~~-q~~-~V~RY-HSLa~~~sSlP---~d~L~VTawTEnG~-iMgaRHkKY~~ieGVQfHPESIlte-e 202 (223)
T KOG0026|consen 131 DEKGEEGLFSGLS-NPF-IVGRY-HSLVIEKDSFP---SDELEVTAWTEDGL-VMAARHRKYKHIQGVQFHPESIITT-E 202 (223)
T ss_pred CCccccccccCCC-CCe-EEEee-eeeeeecccCC---ccceeeeEeccCcE-EEeeeccccccccceeecchhhhhh-h
Confidence 00 0 13444554 233 33444 77776655443 36799999999997 9999999988889999999976554 4
Q ss_pred chHHHHHHHHHHhcch
Q 006689 569 PSPLFLGLIAAACGQL 584 (635)
Q Consensus 569 p~pLF~~Fv~aa~~~~ 584 (635)
++-+.++|++...+.-
T Consensus 203 Gk~~irNflni~~~tW 218 (223)
T KOG0026|consen 203 GKTIVRNFIKIVEKKW 218 (223)
T ss_pred hHHHHHHHHHhcccch
Confidence 7888999998876644
No 74
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=6.6e-16 Score=167.90 Aligned_cols=195 Identities=22% Similarity=0.254 Sum_probs=123.5
Q ss_pred CccEEEEEeccCCCcchHHHHHHHHHHc-cccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccC---CCEEEECCC
Q 006689 330 EPVRIAMVGKYTGLSDAYLSILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKG---ADGILVPGG 405 (635)
Q Consensus 330 ~~v~IalVGkY~~l~DaY~SI~~AL~~a-g~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~---~DGIllPGG 405 (635)
..+++.+++.|.+.. .++.++|..+ +..+.+.+...|+- + ++|+.+.+ +|+|+|.+|
T Consensus 13 ~rl~~LlID~YDSyT---fNiy~ll~~~~~vp~V~~vh~~~~~------------~----d~~~~l~q~~~FDaIVVgPG 73 (767)
T KOG1224|consen 13 PRLRTLLIDNYDSYT---FNIYQLLSTINGVPPVVIVHDEWTW------------E----DAYHYLYQDVAFDAIVVGPG 73 (767)
T ss_pred hheeEEEEecccchh---hhHHHHHHHhcCCCcEEEEeccccC------------H----HHHHHHhhccccceEEecCC
Confidence 358999999887442 4788888776 45555544444442 2 24455544 999999999
Q ss_pred CCCCcchhHHHHHHHHHH--cCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCcccc
Q 006689 406 FGNRGVQGKILAAKYARE--HRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRL 483 (635)
Q Consensus 406 fG~rg~eg~i~air~are--~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrL 483 (635)
||+|.-..-+..+....+ +.||+||||||||.|+++.|+.|.- +| + +..|-
T Consensus 74 PG~P~~a~d~gI~~rl~~~~~~iPilGICLGfQal~l~hGA~v~~---~n-------~-------------p~HGr---- 126 (767)
T KOG1224|consen 74 PGSPMCAADIGICLRLLLECRDIPILGICLGFQALGLVHGAHVVH---AN-------E-------------PVHGR---- 126 (767)
T ss_pred CCCCCcHHHHHHHHHHHHhcCCCceeeeehhhHhHhhhcccceec---CC-------C-------------cccce----
Confidence 999932222223322222 3599999999999999999988741 11 0 11111
Q ss_pred CceeEEEecCCchhhhcc---CCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEe--CCCCeEEEEEeCCCCcEEEEcc
Q 006689 484 GSRRTYFQIKDCKSAKLY---GNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKD--ETSQRMEIVELPNHPYFIGVQF 558 (635)
Q Consensus 484 G~~~v~l~~~~sll~~iy---g~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s--~dg~~vE~iE~~~~p~fvGVQF 558 (635)
...+.. .++-++.++. .....+ .|+ |+..+|+.-++.+ .++++. ++|-.++.+.+.+.||| |+||
T Consensus 127 -vs~i~~-~~~~~f~gi~sg~~~~fK~-~RY-HSL~in~~pid~l-----~il~t~~ddng~ilMsi~~~~fPhf-G~qy 196 (767)
T KOG1224|consen 127 -VSGIEH-DGNILFSGIPSGRNSDFKV-VRY-HSLIINSLPIDLL-----PILWTIYDDNGHILMSIMHSSFPHF-GLQY 196 (767)
T ss_pred -eeeEEe-cCcEEEccCCCCCccccee-EEe-EEEEecCCchhhh-----cceeEeecCCceEEEEeeccCCCcc-ceee
Confidence 011111 1112233333 122233 344 8999998766654 344444 44558999999999996 9999
Q ss_pred cCCCcCCCCCchHHHHHHHHHHh
Q 006689 559 HPEYKSRPGKPSPLFLGLIAAAC 581 (635)
Q Consensus 559 HPE~ss~p~~p~pLF~~Fv~aa~ 581 (635)
|||..... .+..||++|++.+.
T Consensus 197 HPES~~s~-~g~~lfkNFl~lt~ 218 (767)
T KOG1224|consen 197 HPESIAST-YGSQLFKNFLDLTV 218 (767)
T ss_pred ChHHhhhh-hhHHHHHHHHHhhc
Confidence 99987655 47899999999875
No 75
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.67 E-value=1.7e-15 Score=148.99 Aligned_cols=177 Identities=19% Similarity=0.282 Sum_probs=104.2
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCC---
Q 006689 333 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR--- 409 (635)
Q Consensus 333 ~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~r--- 409 (635)
||+++. ++.+|.+..++|+++|+++.. +.. | +.+.++|+|+||||++..
T Consensus 1 ~igvl~----~qg~~~e~~~~l~~~g~~~~~------v~~-----------~-------~~l~~~d~liipGG~~~~~~~ 52 (184)
T TIGR03800 1 KIGVLA----LQGAVREHARALEALGVEGVE------VKR-----------P-------EQLDEIDGLIIPGGESTTLSR 52 (184)
T ss_pred CEEEEE----ccCCHHHHHHHHHHCCCEEEE------ECC-----------h-------HHhccCCEEEECCCCHHHHHH
Confidence 466663 444889999999999986543 221 1 346789999999998653
Q ss_pred --cchhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCC-CCcCcCCCccccCce
Q 006689 410 --GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPE-GSKTHMGGTMRLGSR 486 (635)
Q Consensus 410 --g~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe-~~~~h~GgtmrLG~~ 486 (635)
...+....++.+.+.++|+||||+|||+|+-++.... . +. +..++- ......|+ ..+..
T Consensus 53 l~~~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~~~~~~-------~-~~--------lg~~~~~v~~~~~g~--~~~s~ 114 (184)
T TIGR03800 53 LLDKYGMFEPLRNFILSGLPVFGTCAGLIMLAKEIIGQK-------E-GY--------LGLLDMTVERNAYGR--QVDSF 114 (184)
T ss_pred HHHhccHHHHHHHHHHcCCcEEEECHHHHHHHhhhccCC-------C-Cc--------cCcEEEEEEeeccCC--ccccE
Confidence 1235667788888899999999999999997752110 0 00 000000 00000111 11222
Q ss_pred eEEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCC
Q 006689 487 RTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRP 566 (635)
Q Consensus 487 ~v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p 566 (635)
.+.+... .+ + +.....-..|. +.+..+ +.+++++|++++ . +++++.. + ++|+|||||.+..
T Consensus 115 ~~~l~~~-----~~-~-~~~~~~~~~h~-----~~v~~l-p~~~~vla~~~~-~-~~a~~~~--~-~~gvQfHPE~~~~- 175 (184)
T TIGR03800 115 EAEVDIK-----GV-G-DDPITGVFIRA-----PKIVSV-GNGVEILAKVGN-R-IVAVRQG--N-ILVSSFHPELTDD- 175 (184)
T ss_pred EEEeecc-----cC-C-CCcceEEEEcC-----CCcccC-CCCeEEEEEeCC-e-eEEEEeC--C-EEEEEeCCccCCC-
Confidence 2222211 00 0 00001111222 455555 789999999765 4 6788644 3 6899999998743
Q ss_pred CCchHHHHHHH
Q 006689 567 GKPSPLFLGLI 577 (635)
Q Consensus 567 ~~p~pLF~~Fv 577 (635)
..+|+.|+
T Consensus 176 ---~~~~~~f~ 183 (184)
T TIGR03800 176 ---HRVHEYFL 183 (184)
T ss_pred ---chHHHHhh
Confidence 37888886
No 76
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.65 E-value=4.2e-15 Score=151.40 Aligned_cols=130 Identities=18% Similarity=0.186 Sum_probs=90.2
Q ss_pred hccCCCEEEECCCCCCCc--------c--hhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCC
Q 006689 393 LLKGADGILVPGGFGNRG--------V--QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTK 462 (635)
Q Consensus 393 ~L~~~DGIllPGGfG~rg--------~--eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~ 462 (635)
.+.++|||||+||+.... . ....+.++.+.++++|+||||+|+|+++.++|++|..-+ .
T Consensus 42 ~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~---~-------- 110 (235)
T PRK08250 42 NADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEALGAKYEHSP---E-------- 110 (235)
T ss_pred CccccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhCceeccCC---C--------
Confidence 356889999999986531 1 234677888888999999999999999999999985311 0
Q ss_pred CCeeeeCCCCCcCcCCCccccCceeEEEecC---CchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCC
Q 006689 463 NPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK---DCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETS 539 (635)
Q Consensus 463 ~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~---~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg 539 (635)
. .+|.+++.+.+. +.++..+. +...+. |.|+..+ .+ +.|++++|.++..
T Consensus 111 ------------~------e~G~~~v~lt~~g~~d~l~~~~~-~~~~v~--~~H~d~~------~l-P~~a~~LA~s~~~ 162 (235)
T PRK08250 111 ------------K------EIGYFPITLTEAGLKDPLLSHFG-STLTVG--HWHNDMP------GL-TDQAKVLATSEGC 162 (235)
T ss_pred ------------C------ceeEEEEEEccccccCchhhcCC-CCcEEE--EEeccee------cC-CCCCEEEECCCCC
Confidence 1 123455655442 13444443 344444 4455432 23 7899999999777
Q ss_pred CeEEEEEeCCCCcEEEEcccCCCcC
Q 006689 540 QRMEIVELPNHPYFIGVQFHPEYKS 564 (635)
Q Consensus 540 ~~vE~iE~~~~p~fvGVQFHPE~ss 564 (635)
. ++++...++ ++|+|||||++.
T Consensus 163 ~-~qa~~~~~~--~~g~QfHPE~~~ 184 (235)
T PRK08250 163 P-RQIVQYSNL--VYGFQCHMEFTV 184 (235)
T ss_pred C-ceEEEeCCC--EEEEeecCcCCH
Confidence 6 899998654 679999999864
No 77
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=99.61 E-value=3.2e-15 Score=155.79 Aligned_cols=191 Identities=20% Similarity=0.275 Sum_probs=125.7
Q ss_pred EEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECC-C-CCCC--
Q 006689 334 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPG-G-FGNR-- 409 (635)
Q Consensus 334 IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPG-G-fG~r-- 409 (635)
+-++ ||+.. +..|+..||+|.|+++.- +. +| .++.++|-+++|| | ||..
T Consensus 4 v~~l-d~~ag--n~~si~nal~hlg~~i~~------v~-----------~P-------~DI~~a~rLIfPGVGnfg~~~D 56 (541)
T KOG0623|consen 4 VTLL-DYGAG--NVRSIRNALRHLGFSIKD------VQ-----------TP-------GDILNADRLIFPGVGNFGPAMD 56 (541)
T ss_pred EEEE-ecCCc--cHHHHHHHHHhcCceeee------cc-----------Cc-------hhhccCceEeecCcccchHHHH
Confidence 4566 68765 889999999999998643 11 22 4577899999999 3 5542
Q ss_pred --cchhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCC-----CCCeeeeCCC-CCcCcCCCcc
Q 006689 410 --GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNT-----KNPCVIFMPE-GSKTHMGGTM 481 (635)
Q Consensus 410 --g~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~-----~~pvi~~mpe-~~~~h~Ggtm 481 (635)
.-.|+.+.++...++++|++|||+|+|+|. .+. .|-.+.+ +.-|-.|-.. ..++|+||+-
T Consensus 57 ~L~~~Gf~eplr~YiesgkPfmgicvGlQaLF---~gS---------vE~p~skGLgvipg~v~RFD~s~k~VPhIGWNs 124 (541)
T KOG0623|consen 57 VLNRTGFAEPLRKYIESGKPFMGICVGLQALF---DGS---------VENPPSKGLGVIPGIVGRFDASAKIVPHIGWNS 124 (541)
T ss_pred HHhhhhhHHHHHHHHhcCCCeEeehhhHHHHh---ccc---------ccCCCcCcccccccceecccCCCCcCCcccccc
Confidence 236788899988899999999999999984 333 3332222 2333333222 3479999953
Q ss_pred ccCceeEEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCC
Q 006689 482 RLGSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPE 561 (635)
Q Consensus 482 rLG~~~v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE 561 (635)
|.+-.+ +.+...-+ .-..++.|+| +|++.-..+++.+|++ ++...|. -+.|....+..+.++|||||
T Consensus 125 ------c~v~sd-~effg~~p---~~~~YFVHSy-l~~ek~~~len~~wki-at~kYG~-E~Fi~ai~knN~~AtQFHPE 191 (541)
T KOG0623|consen 125 ------CQVGSD-SEFFGDVP---NRHVYFVHSY-LNREKPKSLENKDWKI-ATCKYGS-ESFISAIRKNNVHATQFHPE 191 (541)
T ss_pred ------cccCCc-ccccccCC---CceEEEEeee-cccccccCCCCCCceE-eeeccCc-HHHHHHHhcCceeeEecccc
Confidence 333333 33333222 2235678998 5666555778889976 4555553 22333334455789999999
Q ss_pred CcCCCCCchHHHHHHHH
Q 006689 562 YKSRPGKPSPLFLGLIA 578 (635)
Q Consensus 562 ~ss~p~~p~pLF~~Fv~ 578 (635)
++... +....++|+.
T Consensus 192 KSG~a--GL~vl~~FL~ 206 (541)
T KOG0623|consen 192 KSGEA--GLSVLRRFLH 206 (541)
T ss_pred cccch--hHHHHHHHHh
Confidence 98775 5778888887
No 78
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.51 E-value=1.7e-13 Score=134.38 Aligned_cols=169 Identities=16% Similarity=0.233 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCC-----cchhHHHHHHH
Q 006689 346 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKILAAKY 420 (635)
Q Consensus 346 aY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~r-----g~eg~i~air~ 420 (635)
++..-.++|+..|+++.. +... +.+.++|||++|||+... ......+.++.
T Consensus 9 ~~~e~~~~l~~~g~~v~~------v~~~------------------~~l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~ 64 (183)
T cd01749 9 DFREHIRALERLGVEVIE------VRTP------------------EDLEGIDGLIIPGGESTTIGKLLRRTGLLDPLRE 64 (183)
T ss_pred CcHHHHHHHHHCCCeEEE------ECCH------------------HHhccCCEEEECCchHHHHHHHHHhCCHHHHHHH
Confidence 455666899988877543 2211 347789999999986421 11345677888
Q ss_pred HHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCC-CcCcCCCccccCceeEEEecCCchhhh
Q 006689 421 AREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEG-SKTHMGGTMRLGSRRTYFQIKDCKSAK 499 (635)
Q Consensus 421 are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~-~~~h~GgtmrLG~~~v~l~~~~sll~~ 499 (635)
+.+.++|+||||+|||+|+-+++.. +. ...+ .+++-. .....|+. .|.....+.. ..
T Consensus 65 ~~~~g~PvlGiC~G~qlL~~~~~~~--~~----~~gl---------G~~~~~v~~~~~g~~--~g~~~~~l~~-----~~ 122 (183)
T cd01749 65 FIRAGKPVFGTCAGLILLAKEVEDQ--GG----QPLL---------GLLDITVRRNAFGRQ--VDSFEADLDI-----PG 122 (183)
T ss_pred HHHcCCeEEEECHHHHHHHHHhccc--CC----CCcc---------CceeEEEEeeccccc--cceEEEcCCC-----Cc
Confidence 8889999999999999999888753 00 0000 000000 00011110 1112222111 11
Q ss_pred ccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcccCCCcCCCCCchHHHHHHH
Q 006689 500 LYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQFHPEYKSRPGKPSPLFLGLI 577 (635)
Q Consensus 500 iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQFHPE~ss~p~~p~pLF~~Fv 577 (635)
+-.+...+ .+.|... +..+ +.+++++|.+++ . +++++.. + ++|+|||||++.. ..+|+.|+
T Consensus 123 ~~~~~~~~--~~~h~~~-----v~~~-p~~~~~la~~~~-~-~~a~~~~--~-~~g~qfHPE~~~~----~~~~~~f~ 183 (183)
T cd01749 123 LGLGPFPA--VFIRAPV-----IEEV-GPGVEVLAEYDG-K-IVAVRQG--N-VLATSFHPELTDD----TRIHEYFL 183 (183)
T ss_pred CCCCccEE--EEEECcE-----EEEc-CCCcEEEEecCC-E-EEEEEEC--C-EEEEEcCCccCCC----cchhhhhC
Confidence 10012222 3344433 3334 679999999854 4 5677653 3 6899999999854 25666663
No 79
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.37 E-value=9.8e-12 Score=122.00 Aligned_cols=80 Identities=13% Similarity=0.189 Sum_probs=59.9
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCc-
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG- 410 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg- 410 (635)
+||+++.=++ +.....+||++.|+++.+ +. +| +.++++|+|++|||++...
T Consensus 3 ~~igVLalqG----~~~Eh~~al~~lG~~v~~------v~-----------~~-------~~l~~~D~LILPGG~~t~~~ 54 (179)
T PRK13526 3 QKVGVLAIQG----GYQKHADMFKSLGVEVKL------VK-----------FN-------NDFDSIDRLVIPGGESTTLL 54 (179)
T ss_pred cEEEEEECCc----cHHHHHHHHHHcCCcEEE------EC-----------CH-------HHHhCCCEEEECCChHHHHH
Confidence 6899996444 666788999999976433 22 11 4578999999999976541
Q ss_pred ----chhHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 006689 411 ----VQGKILAAKYAREHRIPYLGICLGMQVAVI 440 (635)
Q Consensus 411 ----~eg~i~air~are~~iP~LGICLGmQllai 440 (635)
..+..++++...+ ++|++|||+|||+|+-
T Consensus 55 ~ll~~~~l~~~Ik~~~~-~kpilGICaG~qlL~~ 87 (179)
T PRK13526 55 NLLNKHQIFDKLYNFCS-SKPVFGTCAGSIILSK 87 (179)
T ss_pred HHhhhcCcHHHHHHHHc-CCcEEEEcHHHHHHHc
Confidence 2457888887665 6799999999999974
No 80
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.34 E-value=2.2e-11 Score=128.41 Aligned_cols=210 Identities=15% Similarity=0.140 Sum_probs=122.1
Q ss_pred CccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccc-cCCChhhhhHHHHhc--cCCCEEEECCCC
Q 006689 330 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDAT-EKENPDAYKAAWKLL--KGADGILVPGGF 406 (635)
Q Consensus 330 ~~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~-~~~~p~~y~~a~~~L--~~~DGIllPGGf 406 (635)
..++|+|+.=--.-.+.=..+.+.|...... + ++.|+....-...+ ..+..++|..-++.+ ..+||+||+|.+
T Consensus 34 rpl~i~ilNlMp~k~~TE~q~~rll~~~~~q--v--~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITGAp 109 (302)
T PRK05368 34 RPLKILILNLMPKKIETETQFLRLLGNTPLQ--V--DIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITGAP 109 (302)
T ss_pred CCccEEEEeCCCCCchHHHHHHHHhcCCCce--E--EEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcCCC
Confidence 3589999932211123345566666443322 3 34455433322111 111122333344445 489999999987
Q ss_pred CC--C-----cchhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCC
Q 006689 407 GN--R-----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGG 479 (635)
Q Consensus 407 G~--r-----g~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~Gg 479 (635)
-. . -++.+.+.+++++++.+|+||||.|+|+++.++++.. +.. + +
T Consensus 110 ~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi~-k~~------------------~-----~---- 161 (302)
T PRK05368 110 VEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGIP-KYT------------------L-----P---- 161 (302)
T ss_pred CCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCCc-cCC------------------C-----C----
Confidence 44 1 1445888899999999999999999999998888741 100 0 0
Q ss_pred ccccCceeEEEe-cCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEcc
Q 006689 480 TMRLGSRRTYFQ-IKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQF 558 (635)
Q Consensus 480 tmrLG~~~v~l~-~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQF 558 (635)
...+|-++..+. ..+++++++- +.. ..-|-|--+|+.+.+. .+.|++++|.|+... +.++..+++. ++++|+
T Consensus 162 ~K~~Gv~~~~~~~~~~pL~~g~~-d~F--~~phSr~~~V~~~~i~--~~~~l~vLA~S~~~g-v~~~~~~~~r-~~~vQg 234 (302)
T PRK05368 162 EKLSGVFEHRVLDPHHPLLRGFD-DSF--LVPHSRYTEVREEDIR--AATGLEILAESEEAG-VYLFASKDKR-EVFVTG 234 (302)
T ss_pred CceeEEEEEEEcCCCChhhcCCC-Ccc--ccceeehhhccHHHhc--cCCCCEEEecCCCCC-eEEEEeCCCC-EEEEEC
Confidence 011233333332 2224555543 222 2345555556544443 268999999997766 8889887766 579999
Q ss_pred cCCCcCCCCCchHHHHHHHHHHhcc
Q 006689 559 HPEYKSRPGKPSPLFLGLIAAACGQ 583 (635)
Q Consensus 559 HPE~ss~p~~p~pLF~~Fv~aa~~~ 583 (635)
||||... -|-..+.+-..+.
T Consensus 235 HPEYd~~-----tL~~EY~RD~~~~ 254 (302)
T PRK05368 235 HPEYDAD-----TLAQEYFRDLGAG 254 (302)
T ss_pred CCCCCHH-----HHHHHHHHHHhCC
Confidence 9999754 3444444444433
No 81
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.34 E-value=4e-11 Score=124.26 Aligned_cols=212 Identities=20% Similarity=0.243 Sum_probs=126.1
Q ss_pred ccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCC--C
Q 006689 331 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG--N 408 (635)
Q Consensus 331 ~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG--~ 408 (635)
++||||+ .+.... .=.++.++|+++|+.+.+ .|+. ++... ...++++|+|++||||+ +
T Consensus 3 ~~kvaVl-~~pG~n-~d~e~~~Al~~aG~~v~~----v~~~--~~~~~------------~~~l~~~DgLvipGGfs~gD 62 (261)
T PRK01175 3 SIRVAVL-RMEGTN-CEDETVKAFRRLGVEPEY----VHIN--DLAAE------------RKSVSDYDCLVIPGGFSAGD 62 (261)
T ss_pred CCEEEEE-eCCCCC-CHHHHHHHHHHCCCcEEE----Eeec--ccccc------------ccchhhCCEEEECCCCCccc
Confidence 4689999 453332 234778999999988543 3443 11110 02467899999999974 3
Q ss_pred Cc---------c-hhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCC
Q 006689 409 RG---------V-QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMG 478 (635)
Q Consensus 409 rg---------~-eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~G 478 (635)
.- . ..+.++++.+.++++|+||||+|+|+|+- . +-+ +.. ++. .. .+-+.++.+..
T Consensus 63 ~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~-~-GlL---pg~--~~~-~~--~~~~~L~~N~s----- 127 (261)
T PRK01175 63 YIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVE-L-GLL---PGF--DEI-AE--KPEMALTVNES----- 127 (261)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHH-C-CCC---CCC--Ccc-cc--CCcceEeecCC-----
Confidence 21 0 11337788888999999999999999973 2 222 210 000 00 11122332211
Q ss_pred CccccCce--eEEEecCCchhhhccC-CceeEEEEeee-eee-eChhhhhhhcCCCeEEEEE------------eCCCC-
Q 006689 479 GTMRLGSR--RTYFQIKDCKSAKLYG-NRTFIDERHRH-RYE-VNPDMIARLENAGLSFTGK------------DETSQ- 540 (635)
Q Consensus 479 gtmrLG~~--~v~l~~~~sll~~iyg-~~~~I~erHrH-rYe-Vnp~~v~~Le~~Gl~~sa~------------s~dg~- 540 (635)
+ |+-.+ .++....+|.+-+-+. +...+...|.- ||. .+++.+++|+..|..+.-. |++|.
T Consensus 128 ~--~f~~~~~~~~v~~~~s~~~~~~~~~~~~~piah~eG~~~~~~~~~l~~l~~~~~i~~~Y~d~~g~~~~~p~NPNGs~ 205 (261)
T PRK01175 128 N--RFECRPTYLKKENRKCIFTKLLKKDVFQVPVAHAEGRVVFSEEEILERLIENDQIVFRYVDENGNYAGYPWNPNGSI 205 (261)
T ss_pred C--CeEEeeeEEEECCCCChhHhccCCCEEEEeeEcCCcceEeCCHHHHHHHHHCCcEEEEEeCCCCCCCCCCCCCCCCh
Confidence 1 11111 1222232344443332 22223445643 566 6777788888888776644 45554
Q ss_pred -eEEEEEeCCCCcEEEEcccCCCcCCCC------------CchHHHHHHHHHH
Q 006689 541 -RMEIVELPNHPYFIGVQFHPEYKSRPG------------KPSPLFLGLIAAA 580 (635)
Q Consensus 541 -~vE~iE~~~~p~fvGVQFHPE~ss~p~------------~p~pLF~~Fv~aa 580 (635)
-|++|-.++.. ++|.-.|||....|. |+..+|+++++..
T Consensus 206 ~~IAGi~~~~G~-vlglMpHPEr~~~~~~~~~~~~~~~~~~g~~~f~~~~~~~ 257 (261)
T PRK01175 206 YNIAGITNEKGN-VIGLMPHPERAFYGYQHPYWEKEEDYGDGKIFFDSLINYL 257 (261)
T ss_pred hhcceeECCCCC-EEEEcCCHHHhhchhhccccccccCCCchHHHHHHHHHHH
Confidence 37788888877 579999999998877 7889999987644
No 82
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.33 E-value=1.7e-12 Score=139.75 Aligned_cols=154 Identities=21% Similarity=0.258 Sum_probs=100.0
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCc
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSK 474 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~ 474 (635)
.++-||+++|||-+--.+.+-..--...+-++|+||||.|||+|+-.+|+.|.+= ...|.
T Consensus 58 ~~~rgiIiSGGP~SVya~dAP~~dp~if~~~vpvLGICYGmQ~i~~~~Gg~V~~~---~~RE~----------------- 117 (552)
T KOG1622|consen 58 YGPRGIIISGGPNSVYAEDAPSFDPAIFELGVPVLGICYGMQLINKLNGGTVVKG---MVRED----------------- 117 (552)
T ss_pred CCceEEEEeCCCCccccCcCCCCChhHhccCCcceeehhHHHHHHHHhCCccccc---cccCC-----------------
Confidence 4789999999986531111000001123557999999999999999999998641 11111
Q ss_pred CcCCCccccCceeEEEecCCchhhhccCCcee--EEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCc
Q 006689 475 THMGGTMRLGSRRTYFQIKDCKSAKLYGNRTF--IDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPY 552 (635)
Q Consensus 475 ~h~GgtmrLG~~~v~l~~~~sll~~iyg~~~~--I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~ 552 (635)
|...+...+...+|.++.+ ... ++..| + +.+.++ +.|+++.|++.+.. +.++....++
T Consensus 118 ---------G~~eI~v~~~~~lF~~~~~-~~~~~VlltH--g-----dsl~~v-~~g~kv~a~s~n~~-va~i~~e~kk- 177 (552)
T KOG1622|consen 118 ---------GEDEIEVDDSVDLFSGLHK-TEFMTVLLTH--G-----DSLSKV-PEGFKVVAFSGNKP-VAGILNELKK- 177 (552)
T ss_pred ---------CCceEEcCchhhhhhhhcc-cceeeeeecc--c-----cchhhc-cccceeEEeecCcc-eeeehhhhhh-
Confidence 1122222222234555542 332 55544 3 455565 67899999987765 7888888888
Q ss_pred EEEEcccCCCcCCCCCchHHHHHHHHHHhcchhhhhc
Q 006689 553 FIGVQFHPEYKSRPGKPSPLFLGLIAAACGQLDTLIQ 589 (635)
Q Consensus 553 fvGVQFHPE~ss~p~~p~pLF~~Fv~aa~~~~~~~~~ 589 (635)
++|+|||||-...|. +..++.+|+-..++....|..
T Consensus 178 iyglqfhpEV~~t~~-g~~ll~nFl~~vc~~~~n~tm 213 (552)
T KOG1622|consen 178 IYGLQFHPEVTLTPN-GKELLKNFLFDVCGCSGNFTM 213 (552)
T ss_pred hhcCCCCCcccccCc-hhHHHHHHHHHHcCCccCcch
Confidence 579999999998884 678999999666555554543
No 83
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.27 E-value=1.2e-10 Score=118.95 Aligned_cols=178 Identities=21% Similarity=0.272 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCc---------chh-HH
Q 006689 346 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG---------VQG-KI 415 (635)
Q Consensus 346 aY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg---------~eg-~i 415 (635)
+-.++..+|+.+|+++.+ .|+... ... ...++++|||+|||||.... ... ..
T Consensus 11 ~~~~~~~al~~aG~~v~~----v~~~~~-~~~-------------~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~~~ 72 (238)
T cd01740 11 CDRDMAYAFELAGFEAED----VWHNDL-LAG-------------RKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPLLM 72 (238)
T ss_pred CHHHHHHHHHHcCCCEEE----EeccCC-ccc-------------cCCHhhCCEEEECCCCCcccccccccccccChhHH
Confidence 567889999999987653 354321 110 02367899999999974311 111 66
Q ss_pred HHHHHHHHcCCCEEEEehhHHHHHHH--HhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCccccCceeEEEecC
Q 006689 416 LAAKYAREHRIPYLGICLGMQVAVIE--FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFQIK 493 (635)
Q Consensus 416 ~air~are~~iP~LGICLGmQllaie--~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~GgtmrLG~~~v~l~~~ 493 (635)
+.++.+.++++|+||||.|+|+|+-+ +++++.. ..+.++.-. ..+ |. ....+..+
T Consensus 73 ~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~~~---~~~~~~~~~---------------~~~---~~--v~~~v~~~ 129 (238)
T cd01740 73 EEVKEFAERGGLVLGICNGFQILVELGLLPGALIR---NKGLKFICR---------------WQN---RF--VTLRVENN 129 (238)
T ss_pred HHHHHHHhCCCeEEEECcHHHHHHHcCCCcccccc---CCCCceecc---------------ccC---ce--EEEEEcCC
Confidence 78888889999999999999999753 3332211 011111000 000 00 11122222
Q ss_pred Cch-hhh-ccCCceeEEEEeee-eeeeChhhhhhhcCCCeEEEEE-------------eCCCC--eEEEEEeCCCCcEEE
Q 006689 494 DCK-SAK-LYGNRTFIDERHRH-RYEVNPDMIARLENAGLSFTGK-------------DETSQ--RMEIVELPNHPYFIG 555 (635)
Q Consensus 494 ~sl-l~~-iyg~~~~I~erHrH-rYeVnp~~v~~Le~~Gl~~sa~-------------s~dg~--~vE~iE~~~~p~fvG 555 (635)
++. ++. ..|....++..|.+ ||.++++.+.+++..+..+ -. +++|. -|++|-.++.+ ++|
T Consensus 130 ~si~t~~~~~g~~l~~~vaHgeG~~~~~~~~~~~l~~~~~i~-~y~~~~~~~~~~yp~NPnGs~~~iAgi~~~~Gr-vlg 207 (238)
T cd01740 130 DSPFTKGYMEGEVLRIPVAHGEGRFYADDETLAELEENGQIA-QYVDDDGNVTERYPANPNGSLDGIAGICNEDGR-VLG 207 (238)
T ss_pred CCceecCCCCCCEEEEEeECCceeeEcCHHHHHHHHHCCCEE-EEEcCCCCccccCCCCCCCChhcceEEEcCCCC-EEE
Confidence 122 332 12334567788865 7888888888887766554 22 45565 38888888887 579
Q ss_pred EcccCCCcCCC
Q 006689 556 VQFHPEYKSRP 566 (635)
Q Consensus 556 VQFHPE~ss~p 566 (635)
.-.|||....|
T Consensus 208 lMphPer~~~~ 218 (238)
T cd01740 208 MMPHPERAVEP 218 (238)
T ss_pred EcCChHHcccc
Confidence 99999998877
No 84
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.24 E-value=1.6e-11 Score=121.18 Aligned_cols=135 Identities=24% Similarity=0.344 Sum_probs=89.3
Q ss_pred HhccCCCEEEECCCC----CCCc-chhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCee
Q 006689 392 KLLKGADGILVPGGF----GNRG-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCV 466 (635)
Q Consensus 392 ~~L~~~DGIllPGGf----G~rg-~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi 466 (635)
++|.++||++|+|.. ++.. +.-+...++.....++|++|||+|||+++.+.|+.|-.
T Consensus 55 ~Dl~ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara~Gg~Vgr------------------ 116 (245)
T KOG3179|consen 55 EDLEKYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARAKGGKVGR------------------ 116 (245)
T ss_pred hhhhhhceEEEeCCcccccccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHhhCCcccc------------------
Confidence 467889999999974 4322 23345556666677899999999999999998888732
Q ss_pred eeCCCCCcCcCCCccccCceeEEEecCCchhhhccC---CceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEE
Q 006689 467 IFMPEGSKTHMGGTMRLGSRRTYFQIKDCKSAKLYG---NRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRME 543 (635)
Q Consensus 467 ~~mpe~~~~h~GgtmrLG~~~v~l~~~~sll~~iyg---~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE 543 (635)
...|-.|-+|+-.+. +.. ..-.+.+| ....|...|. +.+-.+ |.|++++|.|++.+ +|
T Consensus 117 --------a~KG~~~~lg~itiv-k~~-~~~~~yFG~~~~~l~IikcHq-------Devle~-PE~a~llasSe~ce-ve 177 (245)
T KOG3179|consen 117 --------APKGPDLGLGSITIV-KDA-EKPEKYFGEIPKSLNIIKCHQ-------DEVLEL-PEGAELLASSEKCE-VE 177 (245)
T ss_pred --------CCCCCcccccceEEE-Eec-ccchhhcccchhhhhHHhhcc-------cceecC-Cchhhhhccccccc-eE
Confidence 112333334443322 222 23334443 1223444443 333334 78999999999888 99
Q ss_pred EEEeCCCCcEEEEcccCCCcCC
Q 006689 544 IVELPNHPYFIGVQFHPEYKSR 565 (635)
Q Consensus 544 ~iE~~~~p~fvGVQFHPE~ss~ 565 (635)
++..++| ++++|-||||+..
T Consensus 178 ~fs~~~~--~l~fQGHPEyn~e 197 (245)
T KOG3179|consen 178 MFSIEDH--LLCFQGHPEYNKE 197 (245)
T ss_pred EEEecce--EEEecCCchhhHH
Confidence 9999988 5799999999864
No 85
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.15 E-value=3.4e-09 Score=106.84 Aligned_cols=196 Identities=23% Similarity=0.349 Sum_probs=124.8
Q ss_pred ccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhcc-CCCEEEECCCC--C
Q 006689 331 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGF--G 407 (635)
Q Consensus 331 ~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~-~~DGIllPGGf--G 407 (635)
.+||||+ .+-.. .+..-+..|++++|.++.. .|.... .+. ++|+|++|||| |
T Consensus 2 ~~kvaVi-~fpGt-N~d~d~~~A~~~aG~~~~~----V~~~d~-------------------~~~~~~d~vv~pGGFSyG 56 (231)
T COG0047 2 RPKVAVL-RFPGT-NCDYDMAAAFERAGFEAED----VWHSDL-------------------LLGRDFDGVVLPGGFSYG 56 (231)
T ss_pred CceEEEE-EcCCc-CchHHHHHHHHHcCCCceE----EEeeec-------------------ccCCCccEEEEcCCCCcc
Confidence 4789999 67533 3667788999999988654 466422 133 68999999997 4
Q ss_pred CC---c----chhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCc
Q 006689 408 NR---G----VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT 480 (635)
Q Consensus 408 ~r---g----~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~Ggt 480 (635)
|- | .+..++.++.+.+.++|+||||-|+|+|+ +.| = |+.+ +-.+..
T Consensus 57 DyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~-e~g-L---lPGa----l~~N~s------------------ 109 (231)
T COG0047 57 DYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILS-EAG-L---LPGA----LTRNES------------------ 109 (231)
T ss_pred cccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHH-HcC-c---CCcc----eecCCC------------------
Confidence 42 2 24566777777788999999999999998 532 1 1221 111111
Q ss_pred cccCceeE--EEecCCchhhhccCCc--eeEEEEe-eeeeeeChhhhhhhcCCCeEEEEE-----------eCCCC--eE
Q 006689 481 MRLGSRRT--YFQIKDCKSAKLYGNR--TFIDERH-RHRYEVNPDMIARLENAGLSFTGK-----------DETSQ--RM 542 (635)
Q Consensus 481 mrLG~~~v--~l~~~~sll~~iyg~~--~~I~erH-rHrYeVnp~~v~~Le~~Gl~~sa~-----------s~dg~--~v 542 (635)
.|+-.+.+ ++..++|.+.+.|.+. ..|...| --||.++.+.+++|+.+|..+.-. +++|. -|
T Consensus 110 ~~F~cr~v~l~V~~~~t~ft~~~~~g~~i~ipVAHgEGr~~~~~~~l~~l~~ngqvvfrY~d~~G~~~~~~NPNGS~~~I 189 (231)
T COG0047 110 LRFECRWVYLRVENNNTPFTSGYEGGEVIPIPVAHGEGRYYADDETLAELEENGQVVFRYVDNNGETEEYANPNGSVNGI 189 (231)
T ss_pred CceEEEEEEEEEecCCCHHHHhcCCCceEEEEEeecceeEEccHHHHHHHhhCCeEEEEEecCCCceeeeeCCCCChhhc
Confidence 11112222 3344446666666431 2333444 557888888888888777665533 44554 36
Q ss_pred EEEEeCCCCcEEEEcccCCCcCCCCC----chHHHHHHHHH
Q 006689 543 EIVELPNHPYFIGVQFHPEYKSRPGK----PSPLFLGLIAA 579 (635)
Q Consensus 543 E~iE~~~~p~fvGVQFHPE~ss~p~~----p~pLF~~Fv~a 579 (635)
++|-.++.. ++|.--|||..+.... ...||++.++.
T Consensus 190 aGI~n~~G~-V~gmMPHPERa~~~~~g~~Dg~~lF~s~~~~ 229 (231)
T COG0047 190 AGITNEDGN-VLGMMPHPERASESLLGGEDGLRLFRSARKY 229 (231)
T ss_pred eeEEcCCCC-EEEecCCchhhhhcccCCchHHHHHHHHHHh
Confidence 777777766 6899999999876543 35677766543
No 86
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=99.10 E-value=1.3e-09 Score=106.56 Aligned_cols=82 Identities=26% Similarity=0.454 Sum_probs=62.5
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHcc-ccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCC-
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHAS-VDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 409 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag-~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~r- 409 (635)
+||++++ ++.+...-+++|+.++ ++ ..|+.. | ++|+++||++||||-.+.
T Consensus 1 m~IGVLa----lQG~v~EH~~~l~~~~~~e------~~~Vk~-----------~-------~dL~~~d~LIiPGGESTTi 52 (194)
T COG0311 1 MKIGVLA----LQGAVEEHLEALEKAGGAE------VVEVKR-----------P-------EDLEGVDGLIIPGGESTTI 52 (194)
T ss_pred CeEEEEE----ecccHHHHHHHHHhhcCCc------eEEEcC-----------H-------HHhccCcEEEecCccHHHH
Confidence 4788885 5556777789999996 43 334431 1 578899999999986553
Q ss_pred ----cchhHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 006689 410 ----GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 441 (635)
Q Consensus 410 ----g~eg~i~air~are~~iP~LGICLGmQllaie 441 (635)
...++.+.++...++++|+||.|.||-+|+-+
T Consensus 53 ~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLake 88 (194)
T COG0311 53 GRLLKRYGLLEPLREFIADGLPVFGTCAGLILLAKE 88 (194)
T ss_pred HHHHHHcCcHHHHHHHHHcCCceEEechhhhhhhhh
Confidence 12578889999999999999999999999754
No 87
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.09 E-value=7.6e-09 Score=114.90 Aligned_cols=89 Identities=21% Similarity=0.282 Sum_probs=64.2
Q ss_pred ccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCC-
Q 006689 331 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 409 (635)
Q Consensus 331 ~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~r- 409 (635)
.++|||+ +.-.+.-.|..-+++|+..|+++ .|++.-+ + +.+.++|+|++|||+...
T Consensus 245 ~~~iava-~d~af~f~y~e~~~~L~~~g~~~------~~~~~~~--~--------------~~l~~~D~lilpGG~~~~~ 301 (451)
T PRK01077 245 GVRIAVA-RDAAFNFYYPENLELLRAAGAEL------VFFSPLA--D--------------EALPDCDGLYLGGGYPELF 301 (451)
T ss_pred CceEEEE-ecCcccccHHHHHHHHHHCCCEE------EEeCCcC--C--------------CCCCCCCEEEeCCCchhhH
Confidence 4799999 44445445777789999877653 4554311 0 235588999999997432
Q ss_pred -----cchhHHHHHHHHHHcCCCEEEEehhHHHHHHHH
Q 006689 410 -----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 442 (635)
Q Consensus 410 -----g~eg~i~air~are~~iP~LGICLGmQllaie~ 442 (635)
...++.+.++.+.++++|++|||-|+|+|+-.+
T Consensus 302 ~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~i 339 (451)
T PRK01077 302 AAELAANTSMRASIRAAAAAGKPIYAECGGLMYLGESL 339 (451)
T ss_pred HHHHhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 124678889999999999999999999997553
No 88
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=98.96 E-value=5.4e-09 Score=102.98 Aligned_cols=73 Identities=22% Similarity=0.400 Sum_probs=50.7
Q ss_pred CcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCC-----cchhHHHH
Q 006689 343 LSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKILA 417 (635)
Q Consensus 343 l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~r-----g~eg~i~a 417 (635)
++.++..-.++|+.+|.++. +|.. | ++|.++||+++|||-.+. ...++.+.
T Consensus 4 LQG~~~EH~~~l~~lg~~~~------~Vr~-----------~-------~dL~~~dgLIiPGGESTti~~ll~~~gL~~~ 59 (188)
T PF01174_consen 4 LQGAFREHIRMLERLGAEVV------EVRT-----------P-------EDLEGLDGLIIPGGESTTIGKLLRRYGLFEP 59 (188)
T ss_dssp SSSSHHHHHHHHHHTTSEEE------EE-S-----------G-------GGGTT-SEEEE-SS-HHHHHHHHHHTTHHHH
T ss_pred cccChHHHHHHHHHcCCCeE------EeCC-----------H-------HHHccCCEEEECCCcHHHHHHHHHHcCCHHH
Confidence 34466777888999987752 2221 1 467889999999985442 12478888
Q ss_pred HHHHHHcC-CCEEEEehhHHHHH
Q 006689 418 AKYAREHR-IPYLGICLGMQVAV 439 (635)
Q Consensus 418 ir~are~~-iP~LGICLGmQlla 439 (635)
++....++ +|+||.|.||-+|+
T Consensus 60 l~~~~~~g~~Pv~GTCAGlIlLa 82 (188)
T PF01174_consen 60 LREFIRSGSKPVWGTCAGLILLA 82 (188)
T ss_dssp HHHHHHTT--EEEEETHHHHHHE
T ss_pred HHHHHHcCCCceeehhHHHHHhh
Confidence 98888877 99999999999985
No 89
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.89 E-value=1.6e-07 Score=104.42 Aligned_cols=88 Identities=24% Similarity=0.277 Sum_probs=62.7
Q ss_pred ccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCC-
Q 006689 331 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 409 (635)
Q Consensus 331 ~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~r- 409 (635)
.++||++- .-.+.--|..-+++|+..|++ +.|++... + +.+.++|+|+||||+...
T Consensus 244 ~~~Iava~-d~afnFy~~~~~~~L~~~g~~------~~~~~~~~--d--------------~~l~~~d~l~ipGG~~~~~ 300 (449)
T TIGR00379 244 YVRIAVAQ-DQAFNFYYQDNLDALTHNAAE------LVPFSPLE--D--------------TELPDVDAVYIGGGFPELF 300 (449)
T ss_pred CcEEEEEe-chhhceeHHHHHHHHHHCCCE------EEEECCcc--C--------------CCCCCCCEEEeCCcHHHHH
Confidence 48999994 333433456667889887655 44665421 0 235588999999997432
Q ss_pred -----cchhHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 006689 410 -----GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 441 (635)
Q Consensus 410 -----g~eg~i~air~are~~iP~LGICLGmQllaie 441 (635)
...++.++++.+.+++.|+||||-|||+|+-.
T Consensus 301 ~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~ 337 (449)
T TIGR00379 301 AEELSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQS 337 (449)
T ss_pred HHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhh
Confidence 12457888999889999999999999999855
No 90
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=98.84 E-value=2.7e-09 Score=107.94 Aligned_cols=181 Identities=19% Similarity=0.249 Sum_probs=103.3
Q ss_pred HHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcchh--HHHHHHHHHHc-
Q 006689 348 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQG--KILAAKYAREH- 424 (635)
Q Consensus 348 ~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~eg--~i~air~are~- 424 (635)
.|.++.++.+|+++.- +.+-.+|++ ..+.++-.+||+++||.-.++.-- .-.....+.|.
T Consensus 80 ASYVK~aEsgGARViP---li~nepEe~--------------lfqklelvNGviftGGwak~~dY~~vvkkifnk~le~n 142 (340)
T KOG1559|consen 80 ASYVKLAESGGARVIP---LIYNEPEEI--------------LFQKLELVNGVIFTGGWAKRGDYFEVVKKIFNKVLERN 142 (340)
T ss_pred HHHHHHHHcCCceEEE---EecCCcHHH--------------HHHHHHHhceeEecCcccccccHHHHHHHHHHHHHhcc
Confidence 4678889999988532 222222211 235678899999999976665321 11222334443
Q ss_pred ----CCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCC--CcCcCCCccccCceeEEEecCCchhh
Q 006689 425 ----RIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEG--SKTHMGGTMRLGSRRTYFQIKDCKSA 498 (635)
Q Consensus 425 ----~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~--~~~h~GgtmrLG~~~v~l~~~~sll~ 498 (635)
..|+.|||||+.+|++-...+-.-++. ||.. -.-|+-+ ...+.-|||-. +.|. .++.
T Consensus 143 DaGehFPvyg~CLGFE~lsmiISqnrdile~-----~d~v-----d~AssLqF~~nvn~~~t~FQ-rFPp------ELLk 205 (340)
T KOG1559|consen 143 DAGEHFPVYGICLGFELLSMIISQNRDILER-----FDAV-----DVASSLQFVGNVNIHGTMFQ-RFPP------ELLK 205 (340)
T ss_pred CCccccchhhhhhhHHHHHHHHhcChhHHHh-----hccc-----ccccceeeecccceeehhHh-hCCH------HHHH
Confidence 399999999999998876543222221 2111 0011111 12333455521 1121 3455
Q ss_pred hccCCceeEEEEeeeeeeeChhhhh---hhcCCCeEEEEEeCCCC---eEEEEEeCCCCcEEEEcccCCCcCCCC
Q 006689 499 KLYGNRTFIDERHRHRYEVNPDMIA---RLENAGLSFTGKDETSQ---RMEIVELPNHPYFIGVQFHPEYKSRPG 567 (635)
Q Consensus 499 ~iyg~~~~I~erHrHrYeVnp~~v~---~Le~~Gl~~sa~s~dg~---~vE~iE~~~~p~fvGVQFHPE~ss~p~ 567 (635)
++-- ... ..++|+|.+.|+... .| ..-+.++-++.|++ .|..++.+.+| +.|+|||||+.+-.+
T Consensus 206 kL~~-dcL--vmq~Hk~gisp~nF~~N~~L-s~FFnilTT~~D~~~k~fvSTv~~~kYP-vtgfQWHPEKnafEW 275 (340)
T KOG1559|consen 206 KLST-DCL--VMQNHKFGISPKNFQGNPAL-SSFFNILTTCTDGNSKTFVSTVESKKYP-VTGFQWHPEKNAFEW 275 (340)
T ss_pred Hhcc-chh--eeeccccccchhhccCCHHH-HHHHhheeeecCCCceEEEEeecceecc-ceeeeecCccCcccc
Confidence 5532 222 357899999876432 22 22356666666663 67778888899 579999999976543
No 91
>PRK00784 cobyric acid synthase; Provisional
Probab=98.82 E-value=1e-07 Score=106.95 Aligned_cols=84 Identities=26% Similarity=0.386 Sum_probs=59.7
Q ss_pred ccEEEEEeccCCCcchHHHHHHHHHH-ccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 006689 331 PVRIAMVGKYTGLSDAYLSILKALLH-ASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 409 (635)
Q Consensus 331 ~v~IalVGkY~~l~DaY~SI~~AL~~-ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~r 409 (635)
+++|||+ +|.... ++ .=+++|+. +|+++. ++++. +.+.++|||+||||+-..
T Consensus 251 ~~~i~v~-~~~~a~-~f-~nl~~l~~~~g~~v~------~~s~~------------------~~l~~~d~lilpGg~~~~ 303 (488)
T PRK00784 251 ALRIAVI-RLPRIS-NF-TDFDPLRAEPGVDVR------YVRPG------------------EPLPDADLVILPGSKNTI 303 (488)
T ss_pred ceEEEEE-eCCCcC-Cc-cChHHHhhcCCCeEE------EECCc------------------cccccCCEEEECCccchH
Confidence 4899999 555332 33 44678887 887643 34321 235688999999997432
Q ss_pred -c-----chhHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 006689 410 -G-----VQGKILAAKYAREHRIPYLGICLGMQVAVIE 441 (635)
Q Consensus 410 -g-----~eg~i~air~are~~iP~LGICLGmQllaie 441 (635)
. ..++...++.+.+++.|+||||.|||+|+-.
T Consensus 304 ~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~ 341 (488)
T PRK00784 304 ADLAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRR 341 (488)
T ss_pred HHHHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhh
Confidence 1 1246778888888999999999999999854
No 92
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=98.70 E-value=5.2e-07 Score=101.13 Aligned_cols=83 Identities=22% Similarity=0.326 Sum_probs=58.5
Q ss_pred ccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCc
Q 006689 331 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG 410 (635)
Q Consensus 331 ~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg 410 (635)
.++||++ +|.... ++. =+++|+.. + .+.|++..+ .+.++|+|++|||+-...
T Consensus 247 ~~~Iav~-~~~~~~-nf~-~~~~L~~~--~-----~~~f~~~~~------------------~l~~~d~lilpGg~~~~~ 298 (475)
T TIGR00313 247 SIRIGVV-RLPRIS-NFT-DFEPLRYE--A-----FVKFLDLDD------------------SLTGCDAVIIPGSKSTIA 298 (475)
T ss_pred CcEEEEE-cCCccc-Ccc-ChHHHhhC--C-----CeEEeCCcc------------------ccccCCEEEECCcchHHH
Confidence 3899999 655443 222 46778776 2 245665332 356889999999974321
Q ss_pred ------chhHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 006689 411 ------VQGKILAAKYAREHRIPYLGICLGMQVAVIE 441 (635)
Q Consensus 411 ------~eg~i~air~are~~iP~LGICLGmQllaie 441 (635)
..++.++++.+.+++.|+||||.|||+|+-.
T Consensus 299 ~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~~ 335 (475)
T TIGR00313 299 DLYALKQSGFAEEILDFAKEGGIVIGICGGYQMLGKE 335 (475)
T ss_pred HHHHHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhhh
Confidence 1346788888888999999999999999754
No 93
>PF00988 CPSase_sm_chain: Carbamoyl-phosphate synthase small chain, CPSase domain; InterPro: IPR002474 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the small subunit of carbamoyl phosphate synthase. The small subunit has a 3-layer beta/beta/alpha structure, and is thought to be mobile in most proteins that carry it. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity.; GO: 0006807 nitrogen compound metabolic process; PDB: 1CE8_B 1KEE_B 1CS0_D 1T36_D 1M6V_H 1A9X_F 1JDB_I 1BXR_F 1C3O_B 1C30_F ....
Probab=98.69 E-value=1.2e-09 Score=101.97 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=51.9
Q ss_pred eeeeeeecCCCccccCCccchhhhhhcCCCcccEEEEeeCCCCChhhhccccccCCCCCCCeeeeCCCCCcchhhHHHHH
Q 006689 214 VSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRD 293 (635)
Q Consensus 214 v~~vp~~~~~~e~KtKptQ~svk~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislfc~v~~~~Vi~i~dvdt~y~vpl~Lre 293 (635)
+---|.|+.-|=-+ .++||.++++.++|||+.++.+++|+++.+|..||+.++|+++.+|||| +|+++||+
T Consensus 52 vfTyP~IGNyGv~~--------~~~ES~~~~~~g~iv~e~~~~~s~~~~~~sL~~~L~~~~ipgi~gvDTR-aLt~~lR~ 122 (131)
T PF00988_consen 52 VFTYPLIGNYGVNE--------EDFESDRIHVKGLIVRELSDIPSHWRSEMSLDEWLKEHGIPGISGVDTR-ALTRKLRE 122 (131)
T ss_dssp EESSSB--TT-B-G--------GG-SSSS--BSEEE-SB--SS---TT-SB-HHHHHHHTT-EEEESS-HH-HHHHHHHH
T ss_pred EEeccCCeEEcCCc--------ccCCCCceeeeeeeeccccCCCccccccCCHHHHHHHCCCeeeeCCcHH-HHHHHHHh
Confidence 33356665555332 3599999999999999999999999999999999999999999999999 99999999
Q ss_pred hhhHHHHH
Q 006689 294 QKAHEAIF 301 (635)
Q Consensus 294 qG~~~~i~ 301 (635)
+|.|+++|
T Consensus 123 ~G~m~g~I 130 (131)
T PF00988_consen 123 KGSMKGVI 130 (131)
T ss_dssp H--EEEEE
T ss_pred cCCceEEE
Confidence 99998754
No 94
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=98.65 E-value=1.3e-06 Score=90.84 Aligned_cols=196 Identities=21% Similarity=0.278 Sum_probs=105.5
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCC--CC
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG--NR 409 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG--~r 409 (635)
+||+|+ .+- ....-..+..||+.+|+++.. .|+. ++-.. ...|+++|+|++||||+ |.
T Consensus 2 pkV~Vl-~~p-GtNce~e~~~A~~~aG~~~~~----v~~~--dl~~~------------~~~l~~~~~lvipGGFS~gD~ 61 (259)
T PF13507_consen 2 PKVAVL-RFP-GTNCERETAAAFENAGFEPEI----VHIN--DLLSG------------ESDLDDFDGLVIPGGFSYGDY 61 (259)
T ss_dssp -EEEEE-E-T-TEEEHHHHHHHHHCTT-EEEE----EECC--HHHTT------------S--GCC-SEEEE-EE-GGGGT
T ss_pred CEEEEE-ECC-CCCCHHHHHHHHHHcCCCceE----EEEE--ecccc------------cCchhhCcEEEECCccCcccc
Confidence 688888 343 233667889999999988754 2332 22110 03588999999999974 32
Q ss_pred cc------------hhHHHHHHHHHHc-CCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCc
Q 006689 410 GV------------QGKILAAKYAREH-RIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTH 476 (635)
Q Consensus 410 g~------------eg~i~air~are~-~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h 476 (635)
-- ...+++++...+. +.|+||||-|+|+|+ +.| ++ +.....+ ....+.+++...
T Consensus 62 l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~-~~G--ll--p~~~~~~-----~~~~~~L~~N~s--- 128 (259)
T PF13507_consen 62 LRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILV-ELG--LL--PGGEIKD-----SEQSPALTPNAS--- 128 (259)
T ss_dssp TSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHC-CCC--CS--TT-----------TT--EEE--TT---
T ss_pred chHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHH-HhC--cC--CCccccc-----cCCCcEEcCCCC---
Confidence 11 1236677777777 999999999999995 543 22 1100000 122233333211
Q ss_pred CCCccccCceeEEEe--cCC-ch-hhhccCCceeEEEEeee-eeee-ChhhhhhhcCCCeEEEEEe-------------C
Q 006689 477 MGGTMRLGSRRTYFQ--IKD-CK-SAKLYGNRTFIDERHRH-RYEV-NPDMIARLENAGLSFTGKD-------------E 537 (635)
Q Consensus 477 ~GgtmrLG~~~v~l~--~~~-sl-l~~iyg~~~~I~erHrH-rYeV-np~~v~~Le~~Gl~~sa~s-------------~ 537 (635)
+ |+=.+-+.+. +.+ +. ++.+ ....+...|.+ ||.+ +++..+.|++.|....-.. +
T Consensus 129 --~--~fe~rwv~~~v~~~s~~~~~~~~--~~~~lPiahgeG~~~~~~~~~l~~l~~~~qi~~~Y~~~~g~~a~~yP~NP 202 (259)
T PF13507_consen 129 --G--RFESRWVNLVVNENSPSIFLRGL--EGIVLPIAHGEGRFYARDEATLEELEENGQIAFRYVDEEGNPAQEYPRNP 202 (259)
T ss_dssp --S--S-EEEEEEEEE--SSTTCCCTTT--TCEEEEEEESS-EEE-SSHHHHHHHCCTTEEEEEECSTTSSB--STTTSS
T ss_pred --C--CeEEEEEEEEEecCCcceecCCC--CEEEEEEecCcceeecCCHHHHHHHHhcCeEEEEEecCCCCcccCCCCCC
Confidence 1 1112222221 221 11 1222 23344456644 6777 6778888988888776543 3
Q ss_pred CCC--eEEEEEeCCCCcEEEEcccCCCcCCCC
Q 006689 538 TSQ--RMEIVELPNHPYFIGVQFHPEYKSRPG 567 (635)
Q Consensus 538 dg~--~vE~iE~~~~p~fvGVQFHPE~ss~p~ 567 (635)
+|. -|++|-.++.. ++|.-.|||....+.
T Consensus 203 NGS~~~IAGics~~Gr-vlglMpHPEr~~~~~ 233 (259)
T PF13507_consen 203 NGSVNNIAGICSPDGR-VLGLMPHPERAFEPW 233 (259)
T ss_dssp S--GGGEEEEE-TTSS-EEEESSBCCGTTCCC
T ss_pred CCCccceeEEEcCCCC-EEEEcCChHHhCchh
Confidence 332 48999988887 579999999987664
No 95
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=98.55 E-value=3.6e-06 Score=102.78 Aligned_cols=222 Identities=18% Similarity=0.221 Sum_probs=125.5
Q ss_pred CccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCC--
Q 006689 330 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG-- 407 (635)
Q Consensus 330 ~~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG-- 407 (635)
.++|++|+ -+- ...+-.....|++.+|+++.. .|+. ++....+.+ ...+....|.++|+|++||||.
T Consensus 976 ~kpkvaIl-~~p-GtNce~d~a~Af~~aG~~~~~----v~~~--dl~~~~i~~---s~~~~~~~l~~~~~l~~pGGFSyG 1044 (1239)
T TIGR01857 976 EKPRVVIP-VFP-GTNSEYDSAKAFEKEGAEVNL----VIFR--NLNEEALVE---SVETMVDEIDKSQILMLPGGFSAG 1044 (1239)
T ss_pred CCCeEEEE-ECC-CCCCHHHHHHHHHHcCCceEE----EEEe--cCccccccc---chhhhhcccccCcEEEEcCccCcc
Confidence 35899999 453 223667889999999988543 3443 221111100 0111223578999999999974
Q ss_pred CC--cc----------hhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCC-CCCCeeeeCCCCCc
Q 006689 408 NR--GV----------QGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPN-TKNPCVIFMPEGSK 474 (635)
Q Consensus 408 ~r--g~----------eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~-~~~pvi~~mpe~~~ 474 (635)
|. +- ....++++...+.+.|+||||-|+|+|+ ++|- + +. .++.+. ...| .++.+...
T Consensus 1045 D~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~-~lGL--l--P~---~~~~~~~~~~p--~l~~N~s~ 1114 (1239)
T TIGR01857 1045 DEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALV-KSGL--L--PY---GNIEAANETSP--TLTYNDIN 1114 (1239)
T ss_pred cccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHH-HcCC--C--cC---ccccccccCCc--eeeecCCC
Confidence 42 11 2356666666678999999999999996 5431 1 10 011110 1112 12221100
Q ss_pred CcCCCccccCceeEEEecCCchhhhcc--CCceeEEEEeee-eeeeChhhhhhhcCCCeEEEEE-------------eCC
Q 006689 475 THMGGTMRLGSRRTYFQIKDCKSAKLY--GNRTFIDERHRH-RYEVNPDMIARLENAGLSFTGK-------------DET 538 (635)
Q Consensus 475 ~h~GgtmrLG~~~v~l~~~~sll~~iy--g~~~~I~erHrH-rYeVnp~~v~~Le~~Gl~~sa~-------------s~d 538 (635)
.|.- -...+++..+.|.+-.-+ |....|...|-- ||.++++.+++|+.+|...+-. |++
T Consensus 1115 rf~~-----r~v~~~v~~~~s~~~~~~~~g~~~~ipvaHgEGrf~~~~~~l~~l~~~~qva~rYvd~~g~~t~~~p~NPN 1189 (1239)
T TIGR01857 1115 RHVS-----KIVRTRIASTNSPWLSGVSVGDIHAIPVSHGEGRFVASDEVLAELRENGQIATQYVDFNGKPSMDSKYNPN 1189 (1239)
T ss_pred CeEE-----eeeEEEECCCCChhHhcCCCCCEEEEEeEcCCcceecCHHHHHHHHHCCcEEEEEeCCCCCcccCCCCCCC
Confidence 0100 011223333334333333 333456666643 7888877788888887665543 455
Q ss_pred CC--eEEEEEeCCCCcEEEEcccCCCcCCCC-------CchHHHHHHHH
Q 006689 539 SQ--RMEIVELPNHPYFIGVQFHPEYKSRPG-------KPSPLFLGLIA 578 (635)
Q Consensus 539 g~--~vE~iE~~~~p~fvGVQFHPE~ss~p~-------~p~pLF~~Fv~ 578 (635)
|. -+++|-.++.+ ++|.--|||....+. +...+|.+.++
T Consensus 1190 GS~~~IaGi~s~dGr-vlg~MpHpER~~~~~~~~~~g~~~~~iF~~~v~ 1237 (1239)
T TIGR01857 1190 GSSLAIEGITSPDGR-IFGKMGHSERYGDGLFKNIPGNKDQHLFASGVK 1237 (1239)
T ss_pred CChhhhhEeECCCCC-EEEECCCcccccCcccCCCCchhhhHHHHHHHh
Confidence 54 37788888887 579999999876543 22567776653
No 96
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.54 E-value=1.6e-07 Score=93.16 Aligned_cols=82 Identities=28% Similarity=0.336 Sum_probs=60.6
Q ss_pred EEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCc---
Q 006689 334 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG--- 410 (635)
Q Consensus 334 IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg--- 410 (635)
|+|+ +|.... ++.|+.++++..|+++.. ++.. +.+.++|+|+||||+....
T Consensus 1 ~~~~-~y~~~g-N~~~l~~~~~~~G~~~~~------~~~~------------------~~~~~~d~lilpGg~~~~~~~~ 54 (194)
T cd01750 1 IAVI-RYPDIS-NFTDLDPLAREPGVDVRY------VEVP------------------EGLGDADLIILPGSKDTIQDLA 54 (194)
T ss_pred CEee-cCCCcc-CHHHHHHHHhcCCceEEE------EeCC------------------CCCCCCCEEEECCCcchHHHHH
Confidence 4666 687554 889999999999987543 3321 1245789999999973321
Q ss_pred ---chhHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 006689 411 ---VQGKILAAKYAREHRIPYLGICLGMQVAVIE 441 (635)
Q Consensus 411 ---~eg~i~air~are~~iP~LGICLGmQllaie 441 (635)
..++.+.++.+.++++|+||||.|||+|+-.
T Consensus 55 ~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~ 88 (194)
T cd01750 55 WLRKRGLAEAIKNYARAGGPVLGICGGYQMLGKY 88 (194)
T ss_pred HHHHcCHHHHHHHHHHCCCcEEEECHHHHHhhhh
Confidence 1246777888888999999999999999754
No 97
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.52 E-value=2.1e-06 Score=105.94 Aligned_cols=198 Identities=18% Similarity=0.167 Sum_probs=117.2
Q ss_pred CccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCC-
Q 006689 330 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN- 408 (635)
Q Consensus 330 ~~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~- 408 (635)
..+||+|+ -+- ...+-.....||+.+|+++.. .|+. +|.... ..|.++++|++||||..
T Consensus 1034 ~~pkv~il-~~p-G~N~~~e~~~Af~~aG~~~~~----v~~~--dl~~~~------------~~l~~~~~l~~~GGFS~g 1093 (1290)
T PRK05297 1034 ARPKVAIL-REQ-GVNSHVEMAAAFDRAGFDAID----VHMS--DLLAGR------------VTLEDFKGLVACGGFSYG 1093 (1290)
T ss_pred CCCeEEEE-ECC-CCCCHHHHHHHHHHcCCCeEE----EEee--cCcCCC------------CChhhCcEEEECCccCCc
Confidence 35799999 453 223677889999999998743 3433 332211 24789999999999744
Q ss_pred -C-cc-----------hhHHHHHHHHH-HcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCc
Q 006689 409 -R-GV-----------QGKILAAKYAR-EHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSK 474 (635)
Q Consensus 409 -r-g~-----------eg~i~air~ar-e~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~ 474 (635)
. +. ....++++... +.+.++||||.|+|+|+ ++| .+. +. .| ..| .+..+.
T Consensus 1094 D~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~-~lg-~l~--p~---~~-----~~p--~l~~N~-- 1157 (1290)
T PRK05297 1094 DVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMS-NLK-EII--PG---AE-----HWP--RFVRNR-- 1157 (1290)
T ss_pred ccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHH-HhC-Ccc--CC---CC-----CCC--eEeecC--
Confidence 2 11 12344455533 56899999999999996 554 121 11 11 111 111110
Q ss_pred CcCCCccccCceeEEEecCCc-hhhhccCCceeEEEEeee-eeeeChhhhhhhcCCCeEEEEE-------------eCCC
Q 006689 475 THMGGTMRLGSRRTYFQIKDC-KSAKLYGNRTFIDERHRH-RYEVNPDMIARLENAGLSFTGK-------------DETS 539 (635)
Q Consensus 475 ~h~GgtmrLG~~~v~l~~~~s-ll~~iyg~~~~I~erHrH-rYeVnp~~v~~Le~~Gl~~sa~-------------s~dg 539 (635)
-+...--.-.+++..+.| +++.+-|....++..|.+ ||.++++.+++|+..|...+-. |++|
T Consensus 1158 ---s~rfesr~~~~~v~~~~s~~~~~~~g~~l~~~vaHgeGr~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~NPNG 1234 (1290)
T PRK05297 1158 ---SEQFEARFSLVEVQESPSIFLQGMAGSRLPIAVAHGEGRAEFPDAHLAALEAKGLVALRYVDNHGQVTETYPANPNG 1234 (1290)
T ss_pred ---CCCeEEeeeEEEECCCCChhHhhcCCCEEEEEEEcCcccEEcCHHHHHHHHHCCcEEEEEECCCCCcccCCCCCCCC
Confidence 010000011223333223 344443444567888876 6777777777787777665533 4566
Q ss_pred C--eEEEEEeCCCCcEEEEcccCCCcCCCC
Q 006689 540 Q--RMEIVELPNHPYFIGVQFHPEYKSRPG 567 (635)
Q Consensus 540 ~--~vE~iE~~~~p~fvGVQFHPE~ss~p~ 567 (635)
. -|++|-.++.+ ++|.-.|||....++
T Consensus 1235 S~~~IaGi~s~dGr-vlglMpHPEr~~~~~ 1263 (1290)
T PRK05297 1235 SPNGITGLTTADGR-VTIMMPHPERVFRTV 1263 (1290)
T ss_pred ChhcceEeECCCCC-EEEEcCChHHhcchh
Confidence 4 37888888887 579999999877654
No 98
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=98.47 E-value=6.6e-06 Score=91.32 Aligned_cols=86 Identities=17% Similarity=0.296 Sum_probs=59.4
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcc
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 411 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~ 411 (635)
++|||.-|-- +.=-|..-+++|+.+ +++. .+++ +.+ +.+.++|+|++|||+-.-..
T Consensus 234 ~~iavA~D~A-F~FyY~enl~~L~~~-aelv------~fSP--l~~--------------~~lp~~D~l~lpGG~~e~~~ 289 (433)
T PRK13896 234 PTVAVARDAA-FCFRYPATIERLRER-ADVV------TFSP--VAG--------------DPLPDCDGVYLPGGYPELHA 289 (433)
T ss_pred CeEEEEEcCc-cceeCHHHHHHHHhc-CcEE------EEcC--CCC--------------CCCCCCCEEEeCCCchhhHH
Confidence 7999985532 322577778899988 6532 2222 111 23557899999999854211
Q ss_pred -----hhHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 006689 412 -----QGKILAAKYAREHRIPYLGICLGMQVAVIE 441 (635)
Q Consensus 412 -----eg~i~air~are~~iP~LGICLGmQllaie 441 (635)
.+..+.++.+.+++.|++|||-|||+|+-.
T Consensus 290 ~~L~~n~~~~~i~~~~~~G~pi~aeCGG~q~L~~~ 324 (433)
T PRK13896 290 DALADSPALDELADRAADGLPVLGECGGLMALAES 324 (433)
T ss_pred HHHHhCCcHHHHHHHHHCCCcEEEEehHHHHhhcc
Confidence 234578888888999999999999999743
No 99
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.36 E-value=8.6e-06 Score=100.20 Aligned_cols=205 Identities=13% Similarity=0.118 Sum_probs=116.6
Q ss_pred CccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCC--C
Q 006689 330 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF--G 407 (635)
Q Consensus 330 ~~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGf--G 407 (635)
.++||||+ .+- ...+-.....||+.+|+++.. .|+. +|.... ..|.+++||++|||| |
T Consensus 1036 ~~pkVaVl-~~p-GtN~~~e~~~Af~~aGf~~~~----V~~~--dl~~~~------------~~L~~~~glv~pGGFSyG 1095 (1307)
T PLN03206 1036 SKPKVAII-REE-GSNGDREMAAAFYAAGFEPWD----VTMS--DLLNGR------------ISLDDFRGIVFVGGFSYA 1095 (1307)
T ss_pred CCCeEEEE-ECC-CCCCHHHHHHHHHHcCCceEE----EEee--eccccc------------ccccceeEEEEcCcCCCc
Confidence 46899999 443 223667889999999988732 3443 332211 247899999999998 5
Q ss_pred CCcc------------hhHHHHHHHHH-HcCCCEEEEehhHHHHHHHHhcccccccCCCCCc---cCCCCCCCeeeeCCC
Q 006689 408 NRGV------------QGKILAAKYAR-EHRIPYLGICLGMQVAVIEFARSVLNLRDANSTE---FDPNTKNPCVIFMPE 471 (635)
Q Consensus 408 ~rg~------------eg~i~air~ar-e~~iP~LGICLGmQllaie~GrnV~glkda~S~E---f~~~~~~pvi~~mpe 471 (635)
|.-- +...++++... +.+.++||||.|+|+|+ ++| ++ +.+.... -..+...|. +..+
T Consensus 1096 D~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~-~lg--ll--Pg~~~~~~~~~~~~e~~p~--l~~N 1168 (1307)
T PLN03206 1096 DVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMA-LLG--WV--PGPQVGGGLGAGGDPSQPR--FVHN 1168 (1307)
T ss_pred cccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHH-HcC--CC--CCCccccccccccccCCce--eeec
Confidence 5311 23345555555 45899999999999996 442 21 2111000 000011111 1111
Q ss_pred CCcCcCCCccccCceeEEEecCCch-hhhccCCceeEEEEeeee-eee-ChhhhhhhcCCCeEEEEE-------------
Q 006689 472 GSKTHMGGTMRLGSRRTYFQIKDCK-SAKLYGNRTFIDERHRHR-YEV-NPDMIARLENAGLSFTGK------------- 535 (635)
Q Consensus 472 ~~~~h~GgtmrLG~~~v~l~~~~sl-l~~iyg~~~~I~erHrHr-YeV-np~~v~~Le~~Gl~~sa~------------- 535 (635)
.-+...--.-.+++.+..|. ++.+-|....++..|-|+ |.+ +++.+.+|+..|...+-.
T Consensus 1169 -----~s~rfesr~v~v~V~~s~si~l~~~~G~~l~i~vaHgEGr~~~~~~~~l~~l~~~gqva~rY~d~~g~~t~~yP~ 1243 (1307)
T PLN03206 1169 -----ESGRFECRFTSVTIEDSPAIMLKGMEGSTLGVWAAHGEGRAYFPDESVLDEVLKSNLAPVRYCDDDGEPTEQYPF 1243 (1307)
T ss_pred -----CCCCeEEeceEEEECCCCChhhcccCCCEEEEEEEcCCCCeecCCHHHHHHHHhcCeEEEEEeCCCCCccCCCCC
Confidence 01100000112333333233 333334445678888774 353 355677777777665433
Q ss_pred eCCCCe--EEEEEeCCCCcEEEEcccCCCcCCCC
Q 006689 536 DETSQR--MEIVELPNHPYFIGVQFHPEYKSRPG 567 (635)
Q Consensus 536 s~dg~~--vE~iE~~~~p~fvGVQFHPE~ss~p~ 567 (635)
|++|.. |++|-.++.+ ++|.-.|||....+.
T Consensus 1244 NPNGS~~~IAGi~s~dGR-vlgmMpHPER~~~~~ 1276 (1307)
T PLN03206 1244 NPNGSPLGIAALCSPDGR-HLAMMPHPERCFLMW 1276 (1307)
T ss_pred CCCCChhhceeeECCCCC-EEEEcCCHHHhhhhh
Confidence 456643 7888888888 579999999876654
No 100
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.35 E-value=8.1e-07 Score=99.50 Aligned_cols=78 Identities=21% Similarity=0.209 Sum_probs=53.5
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCC-Cc
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN-RG 410 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~-rg 410 (635)
+||+|+ +..|+.+||++.+.. .+.+.|++.. +.+.++|+|++|||.-. .+
T Consensus 1 m~iGvl--------al~sv~~al~~lg~~---~~~vv~~~~~------------------~~l~~~D~lILPGG~~~~~~ 51 (476)
T PRK06278 1 MEIGLL--------DIKGSLPCFENFGNL---PTKIIDENNI------------------KEIKDLDGLIIPGGSLVESG 51 (476)
T ss_pred CEEEEE--------ehhhHHHHHHHhcCC---CcEEEEeCCh------------------HHhccCCEEEECCCchhhcc
Confidence 478888 567999999998861 2234565421 45789999999997522 11
Q ss_pred --chhHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 006689 411 --VQGKILAAKYAREHRIPYLGICLGMQVAVIE 441 (635)
Q Consensus 411 --~eg~i~air~are~~iP~LGICLGmQllaie 441 (635)
.++..++++ +.++|+||||.|||+|+-.
T Consensus 52 ~l~~~l~~~i~---~~g~pvlGICgG~QmLg~~ 81 (476)
T PRK06278 52 SLTDELKKEIL---NFDGYIIGICSGFQILSEK 81 (476)
T ss_pred hHHHHHHHHHH---HcCCeEEEEcHHHHhcccc
Confidence 134444443 3489999999999999743
No 101
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.30 E-value=1.4e-06 Score=86.78 Aligned_cols=74 Identities=23% Similarity=0.220 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCC---c---chhHHHHHH
Q 006689 346 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR---G---VQGKILAAK 419 (635)
Q Consensus 346 aY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~r---g---~eg~i~air 419 (635)
-|..-+++|+.+|+++. +++... + +.+.++|+|+||||+... . ..++.++++
T Consensus 12 ~y~e~~~~l~~~G~~v~------~~s~~~--~--------------~~l~~~D~lilPGG~~~~~~~~L~~~~~~~~~i~ 69 (198)
T cd03130 12 YYPENLELLEAAGAELV------PFSPLK--D--------------EELPDADGLYLGGGYPELFAEELSANQSMRESIR 69 (198)
T ss_pred ccHHHHHHHHHCCCEEE------EECCCC--C--------------CCCCCCCEEEECCCchHHHHHHHHhhHHHHHHHH
Confidence 57788899999987643 343310 0 234468999999985431 1 235788899
Q ss_pred HHHHcCCCEEEEehhHHHHHHH
Q 006689 420 YAREHRIPYLGICLGMQVAVIE 441 (635)
Q Consensus 420 ~are~~iP~LGICLGmQllaie 441 (635)
.+.++++|++|||.|||+|+-.
T Consensus 70 ~~~~~g~pilgICgG~qlL~~~ 91 (198)
T cd03130 70 AFAESGGPIYAECGGLMYLGES 91 (198)
T ss_pred HHHHcCCCEEEEcccHHHHHHH
Confidence 8888999999999999999854
No 102
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.24 E-value=1.2e-05 Score=99.36 Aligned_cols=197 Identities=16% Similarity=0.139 Sum_probs=110.2
Q ss_pred CccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCC-
Q 006689 330 EPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN- 408 (635)
Q Consensus 330 ~~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~- 408 (635)
..+||||+ .+-. ...-.....||+.+|+++.. .|+. ++.... ..|.+++||++||||..
T Consensus 1054 ~~p~vail-~~pG-~N~~~e~~~Af~~aGf~~~~----v~~~--dl~~~~------------~~l~~~~~lv~~GGFSyg 1113 (1310)
T TIGR01735 1054 VRPKVAIL-REQG-VNGDREMAAAFDRAGFEAWD----VHMS--DLLAGR------------VHLDEFRGLAACGGFSYG 1113 (1310)
T ss_pred CCceEEEE-ECCC-CCCHHHHHHHHHHhCCCcEE----EEEe--ccccCC------------cchhheeEEEEcCCCCCc
Confidence 35799999 4432 23667889999999988543 3433 332211 13678899999999744
Q ss_pred -C-c----c-------hhHHHHHHHHH-HcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCc
Q 006689 409 -R-G----V-------QGKILAAKYAR-EHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSK 474 (635)
Q Consensus 409 -r-g----~-------eg~i~air~ar-e~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~ 474 (635)
. + + ....++++... +.+.++||||.|+|+|+-+.| ++ +.+ +. .|. ++.+.
T Consensus 1114 D~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~g--ll--p~~---~~-----~p~--l~~N~-- 1177 (1310)
T TIGR01735 1114 DVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLE--WI--PGT---EN-----WPH--FVRNN-- 1177 (1310)
T ss_pred cchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhC--cC--CCC---CC-----Cce--eeecC--
Confidence 2 1 1 22344555544 668999999999999972322 11 111 11 111 11110
Q ss_pred CcCCCccccCceeEEEecCCch-hhhccCCceeEEEEeee-eee-eChhhhhhhcCCCeEEEEE-------------eCC
Q 006689 475 THMGGTMRLGSRRTYFQIKDCK-SAKLYGNRTFIDERHRH-RYE-VNPDMIARLENAGLSFTGK-------------DET 538 (635)
Q Consensus 475 ~h~GgtmrLG~~~v~l~~~~sl-l~~iyg~~~~I~erHrH-rYe-Vnp~~v~~Le~~Gl~~sa~-------------s~d 538 (635)
-+...--...+++.++.|. ++.+-|....++..|.+ ||. .+++...+++..|...+-. |++
T Consensus 1178 ---s~~fe~r~~~~~v~~s~s~~~~~~~g~~l~~~vaHgEGr~~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~NPN 1254 (1310)
T TIGR01735 1178 ---SERFEARVASVRVGESPSIMLRGMAGSRLPVAVAHGEGYAAFSSPELQAQADASGLAALRYIDDDGNPTEAYPLNPN 1254 (1310)
T ss_pred ---CCCeEEeeeEEEECCCCChhhhhcCCCEEEEEeEcCCCCeeeCCHHHHHHHHhCCeEEEEEeCCCCCccCCCCCCCC
Confidence 0100000112233332233 33333433457777765 433 4556666776777554433 455
Q ss_pred CCe--EEEEEeCCCCcEEEEcccCCCcCCC
Q 006689 539 SQR--MEIVELPNHPYFIGVQFHPEYKSRP 566 (635)
Q Consensus 539 g~~--vE~iE~~~~p~fvGVQFHPE~ss~p 566 (635)
|.. |++|-.++.+ ++|.-.|||....+
T Consensus 1255 GS~~~IaGi~s~dGr-vl~~MpHPEr~~~~ 1283 (1310)
T TIGR01735 1255 GSPGGIAGITSCDGR-VTIMMPHPERVFRA 1283 (1310)
T ss_pred CChhcceEeECCCCC-EEEEcCCHHHhhhH
Confidence 552 7788888877 46888888876554
No 103
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=98.05 E-value=6.6e-05 Score=72.93 Aligned_cols=87 Identities=18% Similarity=0.219 Sum_probs=58.9
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHccccc--eeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCC-
Q 006689 333 RIAMVGKYTGLSDAYLSILKALLHASVDL--RKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 409 (635)
Q Consensus 333 ~IalVGkY~~l~DaY~SI~~AL~~ag~~~--~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~r- 409 (635)
-|+++ .++.++..-+.-++++.++. .+++++.-+.. .+++.++||+++|||-...
T Consensus 13 VIGVL----ALQGAFiEH~N~~~~c~~en~y~Ik~~~~tVKT------------------~~D~aq~DaLIIPGGEST~m 70 (226)
T KOG3210|consen 13 VIGVL----ALQGAFIEHVNHVEKCIVENRYEIKLSVMTVKT------------------KNDLAQCDALIIPGGESTAM 70 (226)
T ss_pred EEeee----ehhhHHHHHHHHHHHhhccCcceEEEEEEeecC------------------HHHHhhCCEEEecCCchhHH
Confidence 35555 36668877777777776665 56655555532 1578899999999986543
Q ss_pred ----cchhHHHHHHHHHHcC-CCEEEEehhHHHHHHH
Q 006689 410 ----GVQGKILAAKYAREHR-IPYLGICLGMQVAVIE 441 (635)
Q Consensus 410 ----g~eg~i~air~are~~-iP~LGICLGmQllaie 441 (635)
...|....+.....+. +|++|.|.||-.++-.
T Consensus 71 slia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~q 107 (226)
T KOG3210|consen 71 SLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQQ 107 (226)
T ss_pred HHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhhh
Confidence 1234444454555555 9999999999999744
No 104
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=97.98 E-value=0.00013 Score=77.26 Aligned_cols=209 Identities=17% Similarity=0.253 Sum_probs=105.7
Q ss_pred CccEEEEEeccCCCc-chHHHHHHHHHHccccceeeeEEEEecCCCCCcccc-CCChhhhhHHHHhc--cCCCEEEECCC
Q 006689 330 EPVRIAMVGKYTGLS-DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATE-KENPDAYKAAWKLL--KGADGILVPGG 405 (635)
Q Consensus 330 ~~v~IalVGkY~~l~-DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~-~~~p~~y~~a~~~L--~~~DGIllPGG 405 (635)
+.++|+|+ +--..+ +.-.-+++.|..... .+++.|+-...-...+. .+.-+++..-++.+ ..+||+||.|.
T Consensus 33 rpL~I~Il-NLMP~K~~TE~Q~lrlL~~tpl----qv~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITGA 107 (298)
T PF04204_consen 33 RPLKIGIL-NLMPDKEETERQFLRLLSNTPL----QVEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITGA 107 (298)
T ss_dssp --EEEEEE----SSHHHHHHHHHHHCCSSSS-----EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE---
T ss_pred cceEEEEE-ecccchHHHHHHHHHHhcCCCC----ceEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeCC
Confidence 46899999 332211 222334444444433 33455664332211111 11122344455655 47999999998
Q ss_pred CCCC-------cchhHHHHHHHHHHcCCCEEEEehhHHHHHHH-HhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcC
Q 006689 406 FGNR-------GVQGKILAAKYAREHRIPYLGICLGMQVAVIE-FARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHM 477 (635)
Q Consensus 406 fG~r-------g~eg~i~air~are~~iP~LGICLGmQllaie-~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~ 477 (635)
|=.. -++...+.+.|++++..+.|.||.|.|.+... +|-.-.. ++
T Consensus 108 PvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~--------------------l~------- 160 (298)
T PF04204_consen 108 PVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYP--------------------LP------- 160 (298)
T ss_dssp TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EE--------------------EE-------
T ss_pred CcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCccc--------------------CC-------
Confidence 6442 24668889999999999999999999996443 3322111 11
Q ss_pred CCccccCceeEEE-ecCCchhhhccCCceeEEEEeeeee-eeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEE
Q 006689 478 GGTMRLGSRRTYF-QIKDCKSAKLYGNRTFIDERHRHRY-EVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIG 555 (635)
Q Consensus 478 GgtmrLG~~~v~l-~~~~sll~~iyg~~~~I~erHrHrY-eVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvG 555 (635)
....|-++..+ .+.+++++++- +.. ..-|. || +++.+.+. +..++++++.+++.. +-.+..+++.. +=
T Consensus 161 --~KlfGVf~~~~~~~~~pLl~Gfd-d~f--~~PhS-R~t~i~~~~i~--~~~~L~vLa~s~~~G-~~l~~~~d~r~-vf 230 (298)
T PF04204_consen 161 --EKLFGVFEHRVLDPDHPLLRGFD-DTF--FAPHS-RYTEIDRDDIK--KAPGLEVLAESEEAG-VFLVASKDGRQ-VF 230 (298)
T ss_dssp --EEEEEEEEEEES-SS-GGGTT---SEE--EEEEE-EEEE--HHHHC--T-TTEEEEEEETTTE-EEEEEECCCTE-EE
T ss_pred --CcceeceeeeccCCCChhhcCCC-ccc--cCCcc-cccCCCHHHHh--cCCCcEEEeccCCcc-eEEEEcCCCCE-EE
Confidence 12245566663 33446777763 222 22332 22 45544442 368999999998766 77888888774 57
Q ss_pred EcccCCCcCCCCCchHHHHHHHHHHhcchh
Q 006689 556 VQFHPEYKSRPGKPSPLFLGLIAAACGQLD 585 (635)
Q Consensus 556 VQFHPE~ss~p~~p~pLF~~Fv~aa~~~~~ 585 (635)
+|.|||+... -|-+.+.+-..+.++
T Consensus 231 i~GH~EYd~~-----TL~~EY~RD~~~gl~ 255 (298)
T PF04204_consen 231 ITGHPEYDAD-----TLAKEYRRDLAKGLD 255 (298)
T ss_dssp E-S-TT--TT-----HHHHHHHHHHHCT--
T ss_pred EeCCCccChh-----HHHHHHHHHHhCCCC
Confidence 9999999755 466666666665554
No 105
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=97.80 E-value=0.00012 Score=61.59 Aligned_cols=76 Identities=28% Similarity=0.358 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcc----hhHHHHHHHH
Q 006689 346 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV----QGKILAAKYA 421 (635)
Q Consensus 346 aY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~----eg~i~air~a 421 (635)
.+.+..++|+.+++.+.+ ++........ ......+|++++|||+..+.. ..+++.++.+
T Consensus 13 ~~~~~~~~l~~~~~~~~~------~~~~~~~~~~-----------~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~ 75 (115)
T cd01653 13 ELASPLDALREAGAEVDV------VSPDGGPVES-----------DVDLDDYDGLILPGGPGTPDDLARDEALLALLREA 75 (115)
T ss_pred hhHHHHHHHHHCCCeEEE------EcCCCCceec-----------cCChhccCEEEECCCCCchhhhccCHHHHHHHHHH
Confidence 457788899999855433 4433221100 023568999999999877542 5678888888
Q ss_pred HHcCCCEEEEehhHHHH
Q 006689 422 REHRIPYLGICLGMQVA 438 (635)
Q Consensus 422 re~~iP~LGICLGmQll 438 (635)
.+++.|++|+|.|+|++
T Consensus 76 ~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 76 AAAGKPILGICLGAQLL 92 (115)
T ss_pred HHcCCEEEEECchhHhH
Confidence 88999999999999999
No 106
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.75 E-value=3e-05 Score=71.38 Aligned_cols=84 Identities=19% Similarity=0.239 Sum_probs=54.5
Q ss_pred EEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCc---
Q 006689 334 IAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG--- 410 (635)
Q Consensus 334 IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg--- 410 (635)
|++--+.+....+.+.+.+.|+... . +..+.++++... .|+ .++|.+|+|||.-...
T Consensus 2 v~VY~g~g~~~~~~~~~~~~L~~~~-~------v~~~~~~~I~~~-----------~~~--~~ad~lVlPGGa~~~~~~~ 61 (114)
T cd03144 2 VLVYNGPGASPGSLKHLAELLRLYL-A------VSTVTADELAVG-----------PWE--SKTALLVVPGGADLPYCRA 61 (114)
T ss_pred EEEEeCCCCCHHHHHHHHHHHhhcc-c------eeeecHHHHhcC-----------chh--hCCCEEEECCCChHHHHHH
Confidence 4444444545556777888887754 2 223555554321 233 5899999999633221
Q ss_pred --chhHHHHHHHHHHcCCCEEEEehhHHHH
Q 006689 411 --VQGKILAAKYAREHRIPYLGICLGMQVA 438 (635)
Q Consensus 411 --~eg~i~air~are~~iP~LGICLGmQll 438 (635)
..+ .++++...+++.|+||||+|-=++
T Consensus 62 L~~~g-~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 62 LNGKG-NRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred HHhhC-cHHHHHHHHCCCcEEEEecCccce
Confidence 134 778888778899999999998776
No 107
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=97.67 E-value=0.001 Score=82.32 Aligned_cols=90 Identities=20% Similarity=0.191 Sum_probs=59.6
Q ss_pred CCccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCC
Q 006689 329 HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 408 (635)
Q Consensus 329 ~~~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~ 408 (635)
....||||+ .+- ....-.....|++.+|+++.. .|+ .+|... +.+++++||+++|||+.
T Consensus 927 ~~~p~VaIl-~~p-G~N~~~e~~~Af~~aGf~~~~----v~~--~dl~~~-------------~~l~~f~glv~~Ggfsy 985 (1202)
T TIGR01739 927 DPRHQVAVL-LLP-GQSVPHGLLAALTNAGFDPRI----VSI--TELKKT-------------DFLDTFSGLIIGGASGT 985 (1202)
T ss_pred CCCCeEEEE-eCC-CCCCHHHHHHHHHHcCCceEE----EEe--ccCCCC-------------CchhheEEEEEcCcCCC
Confidence 345789999 443 223667889999999998543 233 233211 13568899999999864
Q ss_pred Ccc--------------hhHHHHHHHHH-HcCCCEEEEeh-hHHHHH
Q 006689 409 RGV--------------QGKILAAKYAR-EHRIPYLGICL-GMQVAV 439 (635)
Q Consensus 409 rg~--------------eg~i~air~ar-e~~iP~LGICL-GmQlla 439 (635)
-.. ....++++... +.+.+.||||- |+|+|+
T Consensus 986 ~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~ 1032 (1202)
T TIGR01739 986 LDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLL 1032 (1202)
T ss_pred CccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHH
Confidence 311 12344455544 45899999997 999996
No 108
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=97.65 E-value=0.00011 Score=73.91 Aligned_cols=90 Identities=21% Similarity=0.184 Sum_probs=61.6
Q ss_pred CCccEEEEEeccCCC-cch-HHHHHHHHHHc-cccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCC
Q 006689 329 HEPVRIAMVGKYTGL-SDA-YLSILKALLHA-SVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGG 405 (635)
Q Consensus 329 ~~~v~IalVGkY~~l-~Da-Y~SI~~AL~~a-g~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGG 405 (635)
+...+|++|. ..+. .+. ..++.++++.. |+++... .+.+ .+ ...+.+.++|+|++|||
T Consensus 29 ~~~~~i~~Ip-tAs~~~~~~~~~~~~a~~~l~G~~~~~~----~~~~---~~-----------~~~~~l~~ad~I~l~GG 89 (212)
T cd03146 29 KARPKVLFVP-TASGDRDEYTARFYAAFESLRGVEVSHL----HLFD---TE-----------DPLDALLEADVIYVGGG 89 (212)
T ss_pred cCCCeEEEEC-CCCCCHHHHHHHHHHHHhhccCcEEEEE----eccC---cc-----------cHHHHHhcCCEEEECCc
Confidence 3457999995 4332 234 45688899999 8875542 1111 00 02357889999999996
Q ss_pred CCCCc-----c--hhHHHHHHHHHHcCCCEEEEehhHHHHH
Q 006689 406 FGNRG-----V--QGKILAAKYAREHRIPYLGICLGMQVAV 439 (635)
Q Consensus 406 fG~rg-----~--eg~i~air~are~~iP~LGICLGmQlla 439 (635)
+.. + .++.++++.+.+++.|++|||.|||++.
T Consensus 90 --~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~i~~ 128 (212)
T cd03146 90 --NTFNLLAQWREHGLDAILKAALERGVVYIGWSAGSNCWF 128 (212)
T ss_pred --hHHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHHhhC
Confidence 421 1 2567778877788999999999999996
No 109
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=97.63 E-value=0.00069 Score=71.62 Aligned_cols=196 Identities=13% Similarity=0.185 Sum_probs=110.2
Q ss_pred CccEEEEEeccCCC-cchHHHHHHHHHHccccceeeeEEEEecCCCCCccc-cCCChhhhhHHHHhc--cCCCEEEECCC
Q 006689 330 EPVRIAMVGKYTGL-SDAYLSILKALLHASVDLRKKLVIDWIPACDLEDAT-EKENPDAYKAAWKLL--KGADGILVPGG 405 (635)
Q Consensus 330 ~~v~IalVGkY~~l-~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~-~~~~p~~y~~a~~~L--~~~DGIllPGG 405 (635)
..++|+|+ +--.. .+.=..+++.|...... +++.|+-.+.-...+ ..+.-++|...++.+ ..+||+||.|.
T Consensus 34 rpL~I~IL-NLMP~K~~TE~Q~lRlL~ntplq----v~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITGA 108 (300)
T TIGR01001 34 RPLEILIL-NLMPKKIETENQFLRLLSNSPLQ----VNITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLIITGA 108 (300)
T ss_pred cceeEEEE-ecCCccHHHHHHHHHHhcCCCCc----eEEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcCC
Confidence 35899999 33222 12334556666443333 334455433322111 111222444445444 58999999997
Q ss_pred CCCC-------cchhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCC
Q 006689 406 FGNR-------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMG 478 (635)
Q Consensus 406 fG~r-------g~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~G 478 (635)
|=.. =++...+.+.|++++-...|.||.|.|.+...+ +|++.- .+++
T Consensus 109 PvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~----yGI~K~---------------~l~~------- 162 (300)
T TIGR01001 109 PVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYF----YGIPKY---------------TLPE------- 162 (300)
T ss_pred CcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHH----cCCCcc---------------ccCC-------
Confidence 5331 246788999999999999999999999975443 232210 0111
Q ss_pred CccccCceeEEEecCCchhhhccCCcee-EEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEEc
Q 006689 479 GTMRLGSRRTYFQIKDCKSAKLYGNRTF-IDERHRHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGVQ 557 (635)
Q Consensus 479 gtmrLG~~~v~l~~~~sll~~iyg~~~~-I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGVQ 557 (635)
...|-.+....+.+++++++- +... -.+||. +++.+.+.. ..++++++.|++.. +-.+..+++.. +=+|
T Consensus 163 --KlfGVf~h~~~~~~pL~rGfd-d~f~~PhSR~t---~i~~~~i~~--~~~L~vla~s~e~G-~~l~~s~d~r~-vfi~ 232 (300)
T TIGR01001 163 --KLSGVYKHDIAPDSLLLRGFD-DFFLAPHSRYA---DFDAEDIDK--VTDLEILAESDEAG-VYLAANKDERN-IFVT 232 (300)
T ss_pred --ceEEeecCccCCCCccccCCC-CccccCCCCCC---CCCHHHHhc--CCCCeEEecCCCcc-eEEEEcCCCCE-EEEc
Confidence 112223322223334555543 1221 123332 355554432 36899999887666 67787788664 4599
Q ss_pred ccCCCcCCC
Q 006689 558 FHPEYKSRP 566 (635)
Q Consensus 558 FHPE~ss~p 566 (635)
-|||+....
T Consensus 233 GH~EYd~~T 241 (300)
T TIGR01001 233 GHPEYDAYT 241 (300)
T ss_pred CCCccChhH
Confidence 999997654
No 110
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=97.62 E-value=0.00026 Score=69.83 Aligned_cols=52 Identities=19% Similarity=0.142 Sum_probs=43.3
Q ss_pred ccCCCEEEECCCCCCC-------cchhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcc
Q 006689 394 LKGADGILVPGGFGNR-------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARS 445 (635)
Q Consensus 394 L~~~DGIllPGGfG~r-------g~eg~i~air~are~~iP~LGICLGmQllaie~Grn 445 (635)
..++||+||.|.|=.- =++...+.+.|++++..|.||||.|+|++...+++-
T Consensus 60 ~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi 118 (175)
T cd03131 60 DAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGI 118 (175)
T ss_pred ccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCc
Confidence 4689999999986421 245688899999999999999999999998887664
No 111
>PHA03366 FGAM-synthase; Provisional
Probab=97.61 E-value=0.00081 Score=83.65 Aligned_cols=91 Identities=20% Similarity=0.155 Sum_probs=62.0
Q ss_pred CCCccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCC
Q 006689 328 LHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 407 (635)
Q Consensus 328 ~~~~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG 407 (635)
+..++||||+ .+- ....-.....||..+|+++.. .++ .+|... +.|.+++||++||||+
T Consensus 1025 ~~~~prVaIl-~~p-G~N~~~e~~~Af~~aGf~~~~----v~~--~dL~~~-------------~~l~~f~glv~~GGFS 1083 (1304)
T PHA03366 1025 PDKRHRVAVL-LLP-GCPGPHALLAAFTNAGFDPYP----VSI--EELKDG-------------TFLDEFSGLVIGGSSG 1083 (1304)
T ss_pred CCCCCeEEEE-ECC-CCCCHHHHHHHHHHcCCceEE----EEe--ecCCCC-------------CccccceEEEEcCCCC
Confidence 3456899999 443 223677889999999998543 233 233221 1278899999999986
Q ss_pred CCc-------c-------hhHHHHHHHHH-HcCCCEEEEeh-hHHHHH
Q 006689 408 NRG-------V-------QGKILAAKYAR-EHRIPYLGICL-GMQVAV 439 (635)
Q Consensus 408 ~rg-------~-------eg~i~air~ar-e~~iP~LGICL-GmQlla 439 (635)
.-. + +...++++... +.+.+.||||- |+|+|+
T Consensus 1084 ~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~ 1131 (1304)
T PHA03366 1084 AEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILF 1131 (1304)
T ss_pred CcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHH
Confidence 521 1 23445565555 45899999997 999996
No 112
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=97.47 E-value=0.00012 Score=70.53 Aligned_cols=50 Identities=32% Similarity=0.347 Sum_probs=41.7
Q ss_pred hccCCCEEEECCCCCCCc------chhHHHHHHHHHHcCCCEEEEehhHHHHHHHH
Q 006689 393 LLKGADGILVPGGFGNRG------VQGKILAAKYAREHRIPYLGICLGMQVAVIEF 442 (635)
Q Consensus 393 ~L~~~DGIllPGGfG~rg------~eg~i~air~are~~iP~LGICLGmQllaie~ 442 (635)
.+.++|+|+||||+-.-. ..++.++|+.+.+++.|++|||-|||+|.-.+
T Consensus 4 ~~~~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i 59 (158)
T PF07685_consen 4 LPPDADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESI 59 (158)
T ss_pred CCCCCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHH
Confidence 467899999999975421 24688999999999999999999999998654
No 113
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=97.44 E-value=0.00041 Score=55.61 Aligned_cols=75 Identities=29% Similarity=0.364 Sum_probs=50.8
Q ss_pred HHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcc----hhHHHHHHHHH
Q 006689 347 YLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV----QGKILAAKYAR 422 (635)
Q Consensus 347 Y~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~----eg~i~air~ar 422 (635)
+.++.++++..++.+.+ .+....... . .....++|++++|||...... ...++.++...
T Consensus 14 ~~~~~~~~~~~~~~~~~----~~~~~~~~~--~-----------~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~ 76 (92)
T cd03128 14 LASPLDALREAGAEVDV----VSPDGGPVE--S-----------DVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAA 76 (92)
T ss_pred eecHHHHHHhCCCEEEE----EeCCCCccc--c-----------cCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHH
Confidence 45677888888855443 222211100 0 023568999999999877543 46777788877
Q ss_pred HcCCCEEEEehhHHHH
Q 006689 423 EHRIPYLGICLGMQVA 438 (635)
Q Consensus 423 e~~iP~LGICLGmQll 438 (635)
+++.|++|+|.|+|++
T Consensus 77 ~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 77 AAGKPVLGICLGAQLL 92 (92)
T ss_pred HcCCEEEEEecccccC
Confidence 8899999999999874
No 114
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=96.74 E-value=0.12 Score=56.86 Aligned_cols=91 Identities=19% Similarity=0.229 Sum_probs=56.7
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCc--
Q 006689 333 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRG-- 410 (635)
Q Consensus 333 ~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg-- 410 (635)
+|.|.-.=+....+-+..+.+|+..-.. ...+..|+++.|..+ .| ..+++.+|+|||...+-
T Consensus 2 nVlVY~G~G~~~~sv~~~~~~Lr~~l~p---~y~V~~v~~~~l~~~-----------pw--~~~~~LlV~PGG~d~~y~~ 65 (367)
T PF09825_consen 2 NVLVYNGPGTSPESVRHTLESLRRLLSP---HYAVIPVTADELLNE-----------PW--QSKCALLVMPGGADLPYCR 65 (367)
T ss_pred eEEEEecCCCCHHHHHHHHHHHHHhcCC---CeEEEEeCHHHhhcC-----------cc--ccCCcEEEECCCcchHHHH
Confidence 5555543444444555556666653211 122345666555321 13 35789999999975542
Q ss_pred -chhH-HHHHHHHHHcCCCEEEEehhHHHHH
Q 006689 411 -VQGK-ILAAKYAREHRIPYLGICLGMQVAV 439 (635)
Q Consensus 411 -~eg~-i~air~are~~iP~LGICLGmQlla 439 (635)
..+. ...||...+++--+||||.|--..+
T Consensus 66 ~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as 96 (367)
T PF09825_consen 66 SLNGEGNRRIRQFVENGGGYLGICAGAYYAS 96 (367)
T ss_pred hhChHHHHHHHHHHHcCCcEEEECcchhhhc
Confidence 2333 7788888888999999999987775
No 115
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=96.61 E-value=0.0096 Score=56.72 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=37.4
Q ss_pred CCCEEEECCCCCCCc---chhHHHHHHHHHHcCCCEEEEehhHHHHH
Q 006689 396 GADGILVPGGFGNRG---VQGKILAAKYAREHRIPYLGICLGMQVAV 439 (635)
Q Consensus 396 ~~DGIllPGGfG~rg---~eg~i~air~are~~iP~LGICLGmQlla 439 (635)
++|+|+||||++... .+.....++++.++++|+.|||-|.++|+
T Consensus 60 ~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La 106 (166)
T TIGR01382 60 EYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLI 106 (166)
T ss_pred HCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHH
Confidence 689999999977322 34678889999999999999999999997
No 116
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=96.44 E-value=0.005 Score=62.67 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=41.1
Q ss_pred ccCCCEEEECCCCCC--------------CcchhHHHHHHHHHHcCCCEEEEehhHHHHHHHH
Q 006689 394 LKGADGILVPGGFGN--------------RGVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 442 (635)
Q Consensus 394 L~~~DGIllPGGfG~--------------rg~eg~i~air~are~~iP~LGICLGmQllaie~ 442 (635)
..++|+|++|||+|. |..+...+.++.+.++++|+.+||-|-++|+-+.
T Consensus 83 ~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 83 AEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred hhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 468999999999874 2245688899999999999999999999997554
No 117
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=96.23 E-value=0.0077 Score=61.23 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=40.4
Q ss_pred ccCCCEEEECCCCCCC--------------cchhHHHHHHHHHHcCCCEEEEehhHHHHHHHH
Q 006689 394 LKGADGILVPGGFGNR--------------GVQGKILAAKYAREHRIPYLGICLGMQVAVIEF 442 (635)
Q Consensus 394 L~~~DGIllPGGfG~r--------------g~eg~i~air~are~~iP~LGICLGmQllaie~ 442 (635)
+.++|+|++|||+|.. ..+..++.++.+.++++|+.+||-|-++|+-+.
T Consensus 80 ~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~ 142 (213)
T cd03133 80 AADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKIL 142 (213)
T ss_pred HhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHh
Confidence 4579999999997631 134688889999999999999999999997654
No 118
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=95.92 E-value=0.011 Score=57.60 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=37.3
Q ss_pred CCCEEEECCCCCCC---cchhHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 006689 396 GADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 440 (635)
Q Consensus 396 ~~DGIllPGGfG~r---g~eg~i~air~are~~iP~LGICLGmQllai 440 (635)
.+|+|+||||++.. ..+.....++.+.++++|+.|||.|.++|+-
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~ 123 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAA 123 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHH
Confidence 67999999997642 2245778888888999999999999999974
No 119
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=95.92 E-value=0.024 Score=58.39 Aligned_cols=105 Identities=20% Similarity=0.283 Sum_probs=69.6
Q ss_pred chHHHHHHHHHhcCCCCccEEEEEeccCCCc---chH-HHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhH
Q 006689 314 LLKEWTSRAEICDGLHEPVRIAMVGKYTGLS---DAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKA 389 (635)
Q Consensus 314 ~l~~W~~lv~~~~~~~~~v~IalVGkY~~l~---DaY-~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~ 389 (635)
-|..|..+...+-. ...||++| -+-+.. +.| .+..++++..|+++.. ++..+ +
T Consensus 16 ~l~~~~~~~~~~~~--~~~~v~fI-PtAs~~~~~~~y~~~~~~af~~lG~~v~~------l~~~~--------------d 72 (233)
T PRK05282 16 YLEHALPLIAELLA--GRRKAVFI-PYAGVTQSWDDYTAKVAEALAPLGIEVTG------IHRVA--------------D 72 (233)
T ss_pred hHHHHHHHHHHHHc--CCCeEEEE-CCCCCCCCHHHHHHHHHHHHHHCCCEEEE------eccch--------------h
Confidence 56677777776533 34689999 465422 334 3467888888877432 22110 1
Q ss_pred HHHhccCCCEEEECCCCCCC-----cchhHHHHHHHHHHcCCCEEEEehhHHHHHHH
Q 006689 390 AWKLLKGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAVIE 441 (635)
Q Consensus 390 a~~~L~~~DGIllPGGfG~r-----g~eg~i~air~are~~iP~LGICLGmQllaie 441 (635)
..+.+.++|+|+++||--.+ ...++..+++.+.++++|+.|+|.|.-+++-.
T Consensus 73 ~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~ 129 (233)
T PRK05282 73 PVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPT 129 (233)
T ss_pred hHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhcc
Confidence 23568899999999983221 12356778888888999999999999887643
No 120
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=95.55 E-value=0.16 Score=56.64 Aligned_cols=195 Identities=22% Similarity=0.217 Sum_probs=110.1
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhcc-CCCEEEECCCCCCC-
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLK-GADGILVPGGFGNR- 409 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~-~~DGIllPGGfG~r- 409 (635)
+|||+.-|-- +.=-|.--++.|+.+|+++.- .++ |.+ +.+- ++|+|.|||||-.-
T Consensus 246 ~rIAVA~D~A-F~FyY~~nl~~Lr~~GAelv~------FSP--L~D--------------~~lP~~~D~vYlgGGYPElf 302 (451)
T COG1797 246 VRIAVARDAA-FNFYYPENLELLREAGAELVF------FSP--LAD--------------EELPPDVDAVYLGGGYPELF 302 (451)
T ss_pred ceEEEEecch-hccccHHHHHHHHHCCCEEEE------eCC--cCC--------------CCCCCCCCEEEeCCCChHHH
Confidence 7999985422 323578889999999998643 222 111 2344 69999999997552
Q ss_pred -----cchhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCCCc-ccc
Q 006689 410 -----GVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMGGT-MRL 483 (635)
Q Consensus 410 -----g~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~Ggt-mrL 483 (635)
..+.+.+.|+.+.+.++|++|=|-|+--|+-. |.+++. ..++.+-.+|- ...|+.. +.|
T Consensus 303 A~~L~~n~~~~~~i~~~~~~G~piyaECGGlMYL~~~-------le~~~G------~~~~M~Gvlp~--~~~m~~Rl~~l 367 (451)
T COG1797 303 AEELSANESMRRAIKAFAAAGKPIYAECGGLMYLGES-------LEDADG------DTYEMVGVLPG--STRMTKRLQAL 367 (451)
T ss_pred HHHHhhCHHHHHHHHHHHHcCCceEEecccceeehhh-------eeccCC------ceeeeeeeecc--chhhhhhhhcc
Confidence 23568899999999999999999999888633 232221 12344444443 1344554 457
Q ss_pred CceeEEEecCCchhhhccCCceeEEEEeeeeeeeChhhhhhhcCCCeEEEEEeCCCCe--EEEEEeCCCCcEEEEcccCC
Q 006689 484 GSRRTYFQIKDCKSAKLYGNRTFIDERHRHRYEVNPDMIARLENAGLSFTGKDETSQR--MEIVELPNHPYFIGVQFHPE 561 (635)
Q Consensus 484 G~~~v~l~~~~sll~~iyg~~~~I~erHrHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~--vE~iE~~~~p~fvGVQFHPE 561 (635)
|-+......+ +++... |.+..=.|.|.-+....++ ...-+--...+|.. -+++.. ...+|.=.|==
T Consensus 368 GY~~~~~~~d-~~~~~~-G~~irGHEFHyS~~~~~~~-------~~~a~~~~~g~g~~~~~~G~~~---gnv~asY~H~H 435 (451)
T COG1797 368 GYREAEAVDD-TLLLRA-GEKIRGHEFHYSRLITEED-------AEPAFRVRRGDGIDNGRDGYRS---GNVLASYLHLH 435 (451)
T ss_pred ceeEEEecCC-cccccC-CceeeeeeeeeeecccCCc-------CceeeeeecccCccccccceee---CCeEEEEEeee
Confidence 7677766665 333221 2122224555332222221 01111111111110 123332 23678888877
Q ss_pred CcCCCCCchHHHHHHHHHH
Q 006689 562 YKSRPGKPSPLFLGLIAAA 580 (635)
Q Consensus 562 ~ss~p~~p~pLF~~Fv~aa 580 (635)
+.|.| ..+.+|+++|
T Consensus 436 ~~s~~----~~~~~~v~~~ 450 (451)
T COG1797 436 FASNP----AFAARFVAAA 450 (451)
T ss_pred cccCH----HHHHHHHHhh
Confidence 77766 4678888776
No 121
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=95.41 E-value=0.097 Score=48.76 Aligned_cols=102 Identities=16% Similarity=0.158 Sum_probs=59.4
Q ss_pred cEEEEEeccCCCc-chHHHHHHHHHHccccceeee-EEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 006689 332 VRIAMVGKYTGLS-DAYLSILKALLHASVDLRKKL-VIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 409 (635)
Q Consensus 332 v~IalVGkY~~l~-DaY~SI~~AL~~ag~~~~vkl-~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~r 409 (635)
.||+++- |.... -.+.++.+.|..+++++.+.- .-..+.+..- .....+ ..+.+ .....+|+|+||||.+..
T Consensus 2 ~~v~ill-~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g--~~i~~~-~~l~~--~~~~~~D~liVpGg~~~~ 75 (142)
T cd03132 2 RKVGILV-ADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSDG--KTLEVD-QTYAG--APSVLFDAVVVPGGAEAA 75 (142)
T ss_pred CEEEEEE-cCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCCC--cEEecc-eeecC--CChhhcCEEEECCCccCH
Confidence 3566663 43333 246678889999987654420 0001111110 000000 00100 011258999999987642
Q ss_pred ----cchhHHHHHHHHHHcCCCEEEEehhHHHHH
Q 006689 410 ----GVQGKILAAKYAREHRIPYLGICLGMQVAV 439 (635)
Q Consensus 410 ----g~eg~i~air~are~~iP~LGICLGmQlla 439 (635)
..+..++.++.+.+++.|+.+||-|-.+|+
T Consensus 76 ~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La 109 (142)
T cd03132 76 FALAPSGRALHFVTEAFKHGKPIGAVGEGSDLLE 109 (142)
T ss_pred HHHccChHHHHHHHHHHhcCCeEEEcCchHHHHH
Confidence 345678888888889999999999999886
No 122
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=95.00 E-value=0.035 Score=52.82 Aligned_cols=45 Identities=22% Similarity=0.356 Sum_probs=37.5
Q ss_pred cCCCEEEECCCCCCC---cchhHHHHHHHHHHcCCCEEEEehhHHHHH
Q 006689 395 KGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 439 (635)
Q Consensus 395 ~~~DGIllPGGfG~r---g~eg~i~air~are~~iP~LGICLGmQlla 439 (635)
..+|+|+||||++.. .....+..++.+.++++|+.|||-|-++|+
T Consensus 61 ~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La 108 (165)
T cd03134 61 DDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLI 108 (165)
T ss_pred HHCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHH
Confidence 368999999998543 235678889999899999999999999986
No 123
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=94.69 E-value=0.038 Score=62.23 Aligned_cols=48 Identities=23% Similarity=0.199 Sum_probs=32.7
Q ss_pred hccCCCEEEECCCCCCCc------chhHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 006689 393 LLKGADGILVPGGFGNRG------VQGKILAAKYAREHRIPYLGICLGMQVAVI 440 (635)
Q Consensus 393 ~L~~~DGIllPGGfG~rg------~eg~i~air~are~~iP~LGICLGmQllai 440 (635)
.|.++|.|+|||.--+.. ..|+-+.+....+++.|++|||-|||+|.-
T Consensus 287 ~l~~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~viGICGG~QmLG~ 340 (486)
T COG1492 287 DLRDADLVILPGSKNTIADLKILREGGMDEKILEYARKGGDVIGICGGYQMLGR 340 (486)
T ss_pred CCCCCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCEEEEcchHHhhhh
Confidence 466799999999532221 123434444444458999999999999963
No 124
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=94.60 E-value=0.051 Score=55.86 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=39.6
Q ss_pred ccCCCEEEECCCCCC----CcchhHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 006689 394 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAVI 440 (635)
Q Consensus 394 L~~~DGIllPGGfG~----rg~eg~i~air~are~~iP~LGICLGmQllai 440 (635)
..++|+|++|||.|. +..+...+.++.+.++++|+..||-|-++|.-
T Consensus 92 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~ 142 (231)
T cd03147 92 PDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILAN 142 (231)
T ss_pred HhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHh
Confidence 458999999999764 23456788999999999999999999998864
No 125
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=94.22 E-value=0.057 Score=52.73 Aligned_cols=102 Identities=17% Similarity=0.181 Sum_probs=63.1
Q ss_pred cEEEEEeccCCCcch-HHHHHHHHHHccccceeeeEEEEecCCCCC-ccc-cCCChhhhhHHHHh--ccCCCEEEECCC-
Q 006689 332 VRIAMVGKYTGLSDA-YLSILKALLHASVDLRKKLVIDWIPACDLE-DAT-EKENPDAYKAAWKL--LKGADGILVPGG- 405 (635)
Q Consensus 332 v~IalVGkY~~l~Da-Y~SI~~AL~~ag~~~~vkl~i~wi~s~~le-~~~-~~~~p~~y~~a~~~--L~~~DGIllPGG- 405 (635)
.+|+++ -+....+. +..-.+.|+.+|..+.+. ..+....... ... ....+ ....+. .+++|+|++|||
T Consensus 3 ~~i~i~-~~~g~e~~E~~~p~~~l~~ag~~v~~~--~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~ydal~ipGG~ 76 (188)
T COG0693 3 KKIAIL-LADGFEDLELIVPYDVLRRAGFEVDVA--SPEGKGKSVTSKRGGLVVAD---DKAFDDADAADYDALVIPGGD 76 (188)
T ss_pred ceeEEE-ecCcceehhHhHHHHHHHHCCCeEEEE--ecCCCcceeecccCcceEec---ccccccCCHhHCCEEEECCCc
Confidence 467766 34444444 566778899999876542 1111100110 000 00000 001122 358999999999
Q ss_pred CCCCc---chhHHHHHHHHHHcCCCEEEEehhHHHHH
Q 006689 406 FGNRG---VQGKILAAKYAREHRIPYLGICLGMQVAV 439 (635)
Q Consensus 406 fG~rg---~eg~i~air~are~~iP~LGICLGmQlla 439 (635)
.|... .+..+..++++.++++|+..||-|=++|.
T Consensus 77 ~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~ 113 (188)
T COG0693 77 HGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLA 113 (188)
T ss_pred cchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHh
Confidence 77653 25689999999999999999999999996
No 126
>PRK04155 chaperone protein HchA; Provisional
Probab=93.94 E-value=0.078 Score=56.32 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=39.2
Q ss_pred ccCCCEEEECCCCCC----CcchhHHHHHHHHHHcCCCEEEEehhHHHHH
Q 006689 394 LKGADGILVPGGFGN----RGVQGKILAAKYAREHRIPYLGICLGMQVAV 439 (635)
Q Consensus 394 L~~~DGIllPGGfG~----rg~eg~i~air~are~~iP~LGICLGmQlla 439 (635)
..++|+|+||||.|. +..+...+.++++.++++|+..||-|-++|.
T Consensus 145 ~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll 194 (287)
T PRK04155 145 DSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALL 194 (287)
T ss_pred cccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHH
Confidence 458999999999775 3446688999999999999999999998774
No 127
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=93.80 E-value=0.047 Score=51.45 Aligned_cols=45 Identities=29% Similarity=0.433 Sum_probs=35.8
Q ss_pred cCCCEEEECCCCCC----Ccc-hhHHHHHHHHHHcCCCEEEEehhHHHHH
Q 006689 395 KGADGILVPGGFGN----RGV-QGKILAAKYAREHRIPYLGICLGMQVAV 439 (635)
Q Consensus 395 ~~~DGIllPGGfG~----rg~-eg~i~air~are~~iP~LGICLGmQlla 439 (635)
.++|+|+||||.+. +.. +.....++++.++++|+.+||-|-.+|+
T Consensus 36 ~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~ 85 (147)
T PF01965_consen 36 SDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLA 85 (147)
T ss_dssp GGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHH
T ss_pred hhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhh
Confidence 46899999999873 223 5688899999999999999999997775
No 128
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=93.77 E-value=0.32 Score=46.81 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=37.7
Q ss_pred ccCCCEEEECCCCCCC----cchhHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 006689 394 LKGADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 440 (635)
Q Consensus 394 L~~~DGIllPGGfG~r----g~eg~i~air~are~~iP~LGICLGmQllai 440 (635)
...+|.|+||||.+.. ..+..+..++.+.+++.|+.+||-|-.+|+-
T Consensus 61 ~~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~ 111 (179)
T TIGR01383 61 LEEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLA 111 (179)
T ss_pred cccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHh
Confidence 4579999999986421 2345788888888899999999999999973
No 129
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=93.26 E-value=0.14 Score=49.73 Aligned_cols=48 Identities=25% Similarity=0.316 Sum_probs=39.7
Q ss_pred hccCCCEEEECCCCCCC---cchhHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 006689 393 LLKGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 440 (635)
Q Consensus 393 ~L~~~DGIllPGGfG~r---g~eg~i~air~are~~iP~LGICLGmQllai 440 (635)
...++|.|+||||.+.. ..+..++.++.+.+++.++.+||-|-++|+-
T Consensus 61 ~~~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~ 111 (187)
T cd03137 61 ALAAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAE 111 (187)
T ss_pred ccCCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHH
Confidence 35578999999997653 3466888899888899999999999999863
No 130
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=93.19 E-value=0.14 Score=52.63 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=38.7
Q ss_pred ccCCCEEEECCCCCCC----cchhHHHHHHHHHHcCCCEEEEehhHHHHH
Q 006689 394 LKGADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAV 439 (635)
Q Consensus 394 L~~~DGIllPGGfG~r----g~eg~i~air~are~~iP~LGICLGmQlla 439 (635)
..++|+|++|||.|.. ..+...+.++++.++++|+-.||-|-+++.
T Consensus 94 ~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~ 143 (232)
T cd03148 94 DSEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFL 143 (232)
T ss_pred hhhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHH
Confidence 3589999999997642 346688889999999999999999998774
No 131
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=93.05 E-value=0.54 Score=47.07 Aligned_cols=105 Identities=16% Similarity=0.050 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCCCCccEEEEEeccCCCc--chHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhc
Q 006689 317 EWTSRAEICDGLHEPVRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 394 (635)
Q Consensus 317 ~W~~lv~~~~~~~~~v~IalVGkY~~l~--DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L 394 (635)
.++.+..... ....+|+++. ..+.. +......++++..|+..... .+++..+ + .+..+.+
T Consensus 17 ~~~~~~~~~~--~~~~~i~~ip-tA~~~~~~~~~~~~~~~~~lG~~~~~~---~~~~~~~--------~----~~~~~~l 78 (210)
T cd03129 17 ILQDFLARAG--GAGARVLFIP-TASGDRDEYGEEYRAAFERLGVEVVHL---LLIDTAN--------D----PDVVARL 78 (210)
T ss_pred HHHHHHHHcC--CCCCeEEEEe-CCCCChHHHHHHHHHHHHHcCCceEEE---eccCCCC--------C----HHHHHHH
Confidence 3445544432 2457899994 44321 22345678888888875432 2222100 1 1244678
Q ss_pred cCCCEEEECCCCCCC---cc--hhHHHHHHHHHHcCCCEEEEehhHHHHH
Q 006689 395 KGADGILVPGGFGNR---GV--QGKILAAKYAREHRIPYLGICLGMQVAV 439 (635)
Q Consensus 395 ~~~DGIllPGGfG~r---g~--eg~i~air~are~~iP~LGICLGmQlla 439 (635)
.++|+|+++||--.+ .+ .+..++++....++.|+.|+|.|..+++
T Consensus 79 ~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~ 128 (210)
T cd03129 79 LEADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMG 128 (210)
T ss_pred hhCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhh
Confidence 999999999962111 11 1245556555558999999999999997
No 132
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=92.85 E-value=0.17 Score=48.76 Aligned_cols=46 Identities=17% Similarity=0.162 Sum_probs=38.1
Q ss_pred cCCCEEEECCCCCC--CcchhHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 006689 395 KGADGILVPGGFGN--RGVQGKILAAKYAREHRIPYLGICLGMQVAVI 440 (635)
Q Consensus 395 ~~~DGIllPGGfG~--rg~eg~i~air~are~~iP~LGICLGmQllai 440 (635)
.++|.|+||||++. ...+...+.++.+.+++.++.+||-|-++|+-
T Consensus 59 ~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 106 (170)
T cd03140 59 EDYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVAAICGATLALAR 106 (170)
T ss_pred hHccEEEEcCCcccccCCcHHHHHHHHHHHHcCCEEEEEChHHHHHHH
Confidence 47899999999653 23456788899988999999999999999973
No 133
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=92.52 E-value=0.18 Score=51.21 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=39.1
Q ss_pred ccCCCEEEECCCCCCC----cchhHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 006689 394 LKGADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAVI 440 (635)
Q Consensus 394 L~~~DGIllPGGfG~r----g~eg~i~air~are~~iP~LGICLGmQllai 440 (635)
+.++|+|+||||++.. ..+...+.++.+.++++|+.+||-|-++|+-
T Consensus 88 ~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~ 138 (221)
T cd03141 88 PSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLN 138 (221)
T ss_pred HhHceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHh
Confidence 3578999999998642 3456888899999999999999999998863
No 134
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=92.35 E-value=0.23 Score=48.56 Aligned_cols=46 Identities=17% Similarity=0.240 Sum_probs=37.8
Q ss_pred ccCCCEEEECCCCCCC------cchhHHHHHHHHHHcCCCEEEEehhHHHHH
Q 006689 394 LKGADGILVPGGFGNR------GVQGKILAAKYAREHRIPYLGICLGMQVAV 439 (635)
Q Consensus 394 L~~~DGIllPGGfG~r------g~eg~i~air~are~~iP~LGICLGmQlla 439 (635)
..++|.|+||||.+.. ..+..++.++.+.+++.++.+||-|..+|+
T Consensus 67 ~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La 118 (195)
T cd03138 67 VPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLA 118 (195)
T ss_pred cCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHH
Confidence 4578999999986542 235578888888889999999999999986
No 135
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=92.03 E-value=2.5 Score=50.90 Aligned_cols=197 Identities=16% Similarity=0.132 Sum_probs=102.1
Q ss_pred ccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCC-
Q 006689 331 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR- 409 (635)
Q Consensus 331 ~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~r- 409 (635)
..||||+-.-+ ...++.+..|+..||++..= |.-+||.... ..|+++-||..+|||...
T Consensus 1058 ~PkVAilREeG--vNg~rEMa~af~~AgF~~~D------VtmtDlL~G~------------~~ld~frGlaf~GGFSYaD 1117 (1320)
T KOG1907|consen 1058 APKVAILREEG--VNGDREMAAAFYAAGFETVD------VTMTDLLAGR------------HHLDDFRGLAFCGGFSYAD 1117 (1320)
T ss_pred CCceEEeeccc--cccHHHHHHHHHHcCCceee------eeeehhhcCc------------eeHhHhcceeeecCcchHh
Confidence 46999995333 34789999999999987421 2223433221 236788999999998542
Q ss_pred ------cc-------hhHHHHHHHHH-HcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcC
Q 006689 410 ------GV-------QGKILAAKYAR-EHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKT 475 (635)
Q Consensus 410 ------g~-------eg~i~air~ar-e~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~ 475 (635)
|+ ++...-....+ ..+.=-||||-|.|+|+.- |+- .++ ....|-+.+..+
T Consensus 1118 vLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~L------g~i--~p~----~~~~p~~~l~~N---- 1181 (1320)
T KOG1907|consen 1118 VLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQLMSRL------GWI--GPE----VGKWPDVFLDHN---- 1181 (1320)
T ss_pred hhccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhHHHHHh------ccc--Ccc----ccCCCceeeecc----
Confidence 22 23332222222 2345579999999999742 211 111 112222222111
Q ss_pred cCCCccccCceeEEEecCCchh-hhccCCceeEEEEee-eeeeeC-hhhhhhhcCCCeEEEEEe-C------------CC
Q 006689 476 HMGGTMRLGSRRTYFQIKDCKS-AKLYGNRTFIDERHR-HRYEVN-PDMIARLENAGLSFTGKD-E------------TS 539 (635)
Q Consensus 476 h~GgtmrLG~~~v~l~~~~sll-~~iyg~~~~I~erHr-HrYeVn-p~~v~~Le~~Gl~~sa~s-~------------dg 539 (635)
.-+...--.-++++..+.|.+ ...-|..--++..|- -|+.+. .+.++.++..|+..+-.. + +|
T Consensus 1182 -es~rfE~r~~~vkI~~~~SIml~gM~gs~LgvwvAHGEGRa~f~~e~~~e~~~~~gl~~iryvdd~g~~te~yPfNpNG 1260 (1320)
T KOG1907|consen 1182 -ESGRFECRFGMVKIESNVSIMLSGMAGSVLGVWVAHGEGRATFRSEQNLEHLKKEGLVCIRYVDDYGNVTELYPFNPNG 1260 (1320)
T ss_pred -cccceeeeEEEEEeCCCchhhhccccCCceeeEEEecccceecCcHHHHHHHhhcCeeEEEEecCCCCEeeecccCCCC
Confidence 001000001123443332332 222232334666662 234443 345566767777655432 2 22
Q ss_pred C--eEEEEEeCCCCcEEEEcccCCCcCC
Q 006689 540 Q--RMEIVELPNHPYFIGVQFHPEYKSR 565 (635)
Q Consensus 540 ~--~vE~iE~~~~p~fvGVQFHPE~ss~ 565 (635)
. -+.+|..++.+ +++.--|||....
T Consensus 1261 S~~gIAgicSpdGR-hLAMMPHpER~~l 1287 (1320)
T KOG1907|consen 1261 SPDGIAGICSPDGR-HLAMMPHPERVFL 1287 (1320)
T ss_pred CcccceeeeCCCCC-eeeccCCchheee
Confidence 2 25677777777 4688888886543
No 136
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=91.93 E-value=0.23 Score=46.73 Aligned_cols=46 Identities=22% Similarity=0.259 Sum_probs=37.9
Q ss_pred cCCCEEEECCCCC-CC---cchhHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 006689 395 KGADGILVPGGFG-NR---GVQGKILAAKYAREHRIPYLGICLGMQVAVI 440 (635)
Q Consensus 395 ~~~DGIllPGGfG-~r---g~eg~i~air~are~~iP~LGICLGmQllai 440 (635)
.++|.|+||||++ .. ..+..++.++.+.+++.++.+||-|-.+|+-
T Consensus 59 ~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~ 108 (163)
T cd03135 59 DDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAK 108 (163)
T ss_pred CCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhHHHHHH
Confidence 5799999999973 22 2355788888888999999999999999873
No 137
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=91.47 E-value=0.34 Score=47.67 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=36.4
Q ss_pred cCCCEEEECCCCCCC----cchhHHHHHHHHHHcCCCEEEEehhHHHHH
Q 006689 395 KGADGILVPGGFGNR----GVQGKILAAKYAREHRIPYLGICLGMQVAV 439 (635)
Q Consensus 395 ~~~DGIllPGGfG~r----g~eg~i~air~are~~iP~LGICLGmQlla 439 (635)
.++|.|+||||++.. ..+..+..++.+.+++.|+.+||-|-.++.
T Consensus 65 ~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll 113 (196)
T PRK11574 65 GDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVL 113 (196)
T ss_pred CCCCEEEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHH
Confidence 478999999997532 234578888999999999999999998753
No 138
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=91.07 E-value=1.1 Score=46.14 Aligned_cols=46 Identities=28% Similarity=0.260 Sum_probs=35.0
Q ss_pred cCCCEEEECCCCCCC------cchhHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 006689 395 KGADGILVPGGFGNR------GVQGKILAAKYAREHRIPYLGICLGMQVAVI 440 (635)
Q Consensus 395 ~~~DGIllPGGfG~r------g~eg~i~air~are~~iP~LGICLGmQllai 440 (635)
+++|-+++.||-... ....+-.+++.+.++++|+|.||-|.|+|.-
T Consensus 51 ~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~ 102 (250)
T COG3442 51 DSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQ 102 (250)
T ss_pred ccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccc
Confidence 578888888774321 1123567788999999999999999999974
No 139
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=90.48 E-value=0.35 Score=46.61 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=37.2
Q ss_pred ccCCCEEEECCCCCCC---cchhHHHHHHHHHHcCCCEEEEehhHHHHH
Q 006689 394 LKGADGILVPGGFGNR---GVQGKILAAKYAREHRIPYLGICLGMQVAV 439 (635)
Q Consensus 394 L~~~DGIllPGGfG~r---g~eg~i~air~are~~iP~LGICLGmQlla 439 (635)
...+|+|+||||.+.. ..+..+..++.+.++++|+.+||-|--+|+
T Consensus 60 ~~~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La 108 (183)
T cd03139 60 PPDLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLA 108 (183)
T ss_pred CCCCCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHH
Confidence 4478999999997643 235577888888888999999999997775
No 140
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=89.92 E-value=0.48 Score=46.06 Aligned_cols=46 Identities=22% Similarity=0.235 Sum_probs=38.5
Q ss_pred ccCCCEEEECCCCCCC--cchhHHHHHHHHHHcCCCEEEEehhHHHHH
Q 006689 394 LKGADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAV 439 (635)
Q Consensus 394 L~~~DGIllPGGfG~r--g~eg~i~air~are~~iP~LGICLGmQlla 439 (635)
..++|.|+||||.+.. ..+..++.++.+.+++..+.+||-|..+++
T Consensus 62 ~~~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La 109 (185)
T cd03136 62 APPLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLA 109 (185)
T ss_pred cCCCCEEEEeCCCCccccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHH
Confidence 3578999999986643 345688889998899999999999999986
No 141
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=89.54 E-value=0.45 Score=45.41 Aligned_cols=48 Identities=19% Similarity=0.150 Sum_probs=37.5
Q ss_pred hccCCCEEEECCCCCC---CcchhHHHHHHHHHHcCCCEEEEehhHHHHHH
Q 006689 393 LLKGADGILVPGGFGN---RGVQGKILAAKYAREHRIPYLGICLGMQVAVI 440 (635)
Q Consensus 393 ~L~~~DGIllPGGfG~---rg~eg~i~air~are~~iP~LGICLGmQllai 440 (635)
....+|.|+||||++. ...+..++.++.+..++.++.+||-|..+++-
T Consensus 58 ~~~~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~ 108 (166)
T PF13278_consen 58 DAPDFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAE 108 (166)
T ss_dssp CCSCCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHH
T ss_pred hcccCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhh
Confidence 3568899999999981 23456778888877889999999999999973
No 142
>PRK11249 katE hydroperoxidase II; Provisional
Probab=88.99 E-value=1.4 Score=52.75 Aligned_cols=104 Identities=20% Similarity=0.146 Sum_probs=62.2
Q ss_pred CccEEEEEeccCCC-cchHHHHHHHHHHccccceeee-EEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCC
Q 006689 330 EPVRIAMVGKYTGL-SDAYLSILKALLHASVDLRKKL-VIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFG 407 (635)
Q Consensus 330 ~~v~IalVGkY~~l-~DaY~SI~~AL~~ag~~~~vkl-~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG 407 (635)
++.||||+- +... ...+..+.++|+.+|+.+.+.- ..-.|.+.+= ..+..+ ..|..+ ....+|+|+||||..
T Consensus 596 ~gRKIaILV-aDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G--~~I~aD-~t~~~~--~Sv~FDAVvVPGG~~ 669 (752)
T PRK11249 596 KGRKVAILL-NDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDG--TVLPIA-ATFAGA--PSLTFDAVIVPGGKA 669 (752)
T ss_pred cccEEEEEe-cCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCC--CEEecc-eeeccC--CccCCCEEEECCCch
Confidence 457888884 4333 3357788999999997654420 0011111110 000000 001000 012589999999864
Q ss_pred CC----cchhHHHHHHHHHHcCCCEEEEehhHHHHH
Q 006689 408 NR----GVQGKILAAKYAREHRIPYLGICLGMQVAV 439 (635)
Q Consensus 408 ~r----g~eg~i~air~are~~iP~LGICLGmQlla 439 (635)
.. .....+..++.+.++.+|+..||-|.++|+
T Consensus 670 ~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLa 705 (752)
T PRK11249 670 NIADLADNGDARYYLLEAYKHLKPIALAGDARKLKA 705 (752)
T ss_pred hHHHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHH
Confidence 32 234578888999999999999999999997
No 143
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=86.16 E-value=5.8 Score=41.82 Aligned_cols=196 Identities=16% Similarity=0.231 Sum_probs=108.4
Q ss_pred CccEEEEEeccCCCcchHHH-HHHHHHHcc-ccceeeeEEEEecCCCCCccccCCChhhhhHHHHhc--cCCCEEEECCC
Q 006689 330 EPVRIAMVGKYTGLSDAYLS-ILKALLHAS-VDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGG 405 (635)
Q Consensus 330 ~~v~IalVGkY~~l~DaY~S-I~~AL~~ag-~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIllPGG 405 (635)
...+|+|+- --. .+.- =..-|+..| -.+.|.+.+..+++-.-. .+..+...+|...++.+ ..+||.||.|.
T Consensus 34 RPL~IlilN-LMP---~Ki~TE~Q~lRLL~nsPLQV~itll~~~sh~~K-nTp~eHl~~FY~tfeeVk~~~FDG~IiTGA 108 (307)
T COG1897 34 RPLKILILN-LMP---KKIETETQILRLLGNSPLQVDITLLRIDSHESK-NTPAEHLNSFYCTFEEVKDQKFDGLIITGA 108 (307)
T ss_pred ccceeeeee-cCc---hhHHHHHHHHHHhcCCCceEEEEEEEecCcCCC-CCcHHHHHHHhhcHHHHhhcccCceEEeCC
Confidence 356888883 221 1111 112233333 244555566666654321 11112233455555655 47999999997
Q ss_pred CCCC------c-chhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhcccccccCCCCCccCCCCCCCeeeeCCCCCcCcCC
Q 006689 406 FGNR------G-VQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSVLNLRDANSTEFDPNTKNPCVIFMPEGSKTHMG 478 (635)
Q Consensus 406 fG~r------g-~eg~i~air~are~~iP~LGICLGmQllaie~GrnV~glkda~S~Ef~~~~~~pvi~~mpe~~~~h~G 478 (635)
|=.. . ++.+.+.+.|...+=--.|=||.|.|.....+ +|++... ||+. .
T Consensus 109 Pve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~----yGv~K~~---------------l~~K----l- 164 (307)
T COG1897 109 PVELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYF----YGVPKYT---------------LPEK----L- 164 (307)
T ss_pred cccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHH----cCCCccc---------------cchh----h-
Confidence 6332 1 46678888999888788999999999987654 3333211 1211 0
Q ss_pred CccccCceeEE-EecCCchhhhccCCceeEEEEe-eeeeeeChhhhhhhcCCCeEEEEEeCCCCeEEEEEeCCCCcEEEE
Q 006689 479 GTMRLGSRRTY-FQIKDCKSAKLYGNRTFIDERH-RHRYEVNPDMIARLENAGLSFTGKDETSQRMEIVELPNHPYFIGV 556 (635)
Q Consensus 479 gtmrLG~~~v~-l~~~~sll~~iyg~~~~I~erH-rHrYeVnp~~v~~Le~~Gl~~sa~s~dg~~vE~iE~~~~p~fvGV 556 (635)
.|-++-. +.+.+.++++.- +.. ..-| || =+|+.+.+.. -.++++++.|+... +-.+..+++..+ =+
T Consensus 165 ----~GVy~h~~l~p~~~l~rGfd-d~f--~~PhSR~-t~~~~e~i~~--~~~LeIL~es~e~G-~~l~a~k~~r~i-fv 232 (307)
T COG1897 165 ----SGVYKHDILSPHSLLTRGFD-DSF--LAPHSRY-TDVPKEDILA--VPDLEILAESKEAG-VYLLASKDGRNI-FV 232 (307)
T ss_pred ----hceeeccccCccchhhccCC-ccc--cCccccc-ccCCHHHHhh--CCCceeeecccccc-eEEEecCCCCeE-EE
Confidence 1222222 233322333331 221 1223 22 1566666665 36799999887655 677777777653 46
Q ss_pred cccCCCcCCC
Q 006689 557 QFHPEYKSRP 566 (635)
Q Consensus 557 QFHPE~ss~p 566 (635)
--|||+....
T Consensus 233 ~gH~EYD~~t 242 (307)
T COG1897 233 TGHPEYDATT 242 (307)
T ss_pred eCCcchhhhH
Confidence 6799998665
No 144
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=85.12 E-value=1.3 Score=47.12 Aligned_cols=47 Identities=30% Similarity=0.359 Sum_probs=37.6
Q ss_pred hccCCCEEEECCCCCCC--cchhHHHHHHHHHHcCCCEEEEehhHHHHH
Q 006689 393 LLKGADGILVPGGFGNR--GVQGKILAAKYAREHRIPYLGICLGMQVAV 439 (635)
Q Consensus 393 ~L~~~DGIllPGGfG~r--g~eg~i~air~are~~iP~LGICLGmQlla 439 (635)
....+|.|+||||.+.. ..+..++.++.+.+++.++.|||-|--+|+
T Consensus 72 ~~~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La 120 (322)
T PRK09393 72 LLDRADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLA 120 (322)
T ss_pred ccCCCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHH
Confidence 45688999999986532 234577888888888999999999998876
No 145
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=82.95 E-value=4.6 Score=43.93 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=43.2
Q ss_pred CCeEEEEccccccchh------hHHHHHHhcCcCCCCceeEEeccCCcccc-------CCCCCCc-cCcceEEEccCCcc
Q 006689 35 NLQYMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFGLDPYLNT-------DAGTMSP-FEHGEVFVLDDGGE 100 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K~DpYlN~-------d~gtmsp-~eHGEvfV~~DG~E 100 (635)
+...|-|||- +|.| .+...|+. +|++|..+.+||.-.. |.-.|.. .+|+.||+-..++.
T Consensus 55 ~~~~igi~G~--~GaGKSTl~~~l~~~l~~-----~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~ 127 (332)
T PRK09435 55 NALRIGITGV--PGVGKSTFIEALGMHLIE-----QGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSS 127 (332)
T ss_pred CcEEEEEECC--CCCCHHHHHHHHHHHHHH-----CCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCc
Confidence 4567888886 6777 67778888 9999999999998765 5455653 36666777666553
No 146
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=81.65 E-value=4.9 Score=38.46 Aligned_cols=78 Identities=13% Similarity=0.113 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHhcccCCCCCCCCcEEEEeeCCcccccCcchHHHHHHHhhhhcCCCCEEEEeeeeeeeecCCCccccCCc
Q 006689 152 TDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPT 231 (635)
Q Consensus 152 t~~i~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdies~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~KtKpt 231 (635)
.+.++++++... ...+|+|||-.++.++|. . +.+++ ....+..++|.- .+..--+-+
T Consensus 53 ~~~l~~~~~~~~-------~~~yD~VIiD~pp~~~~~---~-~~~~~----------~~~ad~viiV~~--p~~~s~~~~ 109 (169)
T cd02037 53 MGAIKQFLTDVD-------WGELDYLVIDMPPGTGDE---H-LTLAQ----------SLPIDGAVIVTT--PQEVALDDV 109 (169)
T ss_pred HHHHHHHHHHhh-------cCCCCEEEEeCCCCCcHH---H-HHHHh----------ccCCCeEEEEEC--CchhhHHHH
Confidence 345666666553 257999999999988752 1 12221 011133334422 234444455
Q ss_pred cchhhhhhcCCCcccEEEEee
Q 006689 232 QHSVRGLRGQGLTPNILACRS 252 (635)
Q Consensus 232 Q~svk~Lrs~Gi~pd~iv~R~ 252 (635)
...++.++..++...++|+-.
T Consensus 110 ~~~~~~l~~~~~~~~gvv~N~ 130 (169)
T cd02037 110 RKAIDMFKKVNIPILGVVENM 130 (169)
T ss_pred HHHHHHHHhcCCCeEEEEEcC
Confidence 667778889999888887743
No 147
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=80.49 E-value=2.3 Score=42.56 Aligned_cols=159 Identities=14% Similarity=0.117 Sum_probs=81.8
Q ss_pred EEEccccccchh------hHHHHHHhcCcCCCCceeEEeccCCccccCCCCCCccCcceEEEccCCccccCCCCcccccc
Q 006689 39 MFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFGLDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFM 112 (635)
Q Consensus 39 i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K~DpYlN~d~gtmsp~eHGEvfV~~DG~E~DlDlG~YeRfl 112 (635)
||||| .=++.| .|.+.|+. +|++|-..| |.++|--... .|=|.--..++.
T Consensus 2 i~I~~-t~t~~GKT~vs~~L~~~l~~-----~g~~v~~~K-------------Pv~~g~~~~~-----~~~d~~~~~~~~ 57 (222)
T PRK00090 2 LFVTG-TDTDVGKTVVTAALAQALRE-----AGYSVAGYK-------------PVQSGCEETD-----RNGDALALQRLS 57 (222)
T ss_pred EEEEe-CCCCcCHHHHHHHHHHHHHH-----cCCceEEEe-------------eEecCCCCCC-----CcHHHHHHHHHc
Confidence 56655 347777 67789999 999998755 6666531110 122333344554
Q ss_pred CCCCCCCCcccchHhHHHH----HhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCCccccc
Q 006689 113 DIKLTRDNNITTGKIYQSV----IDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDI 188 (635)
Q Consensus 113 ~~~l~~~~nittGkiy~~v----i~kEr~g~ylG~tvQviPHit~~i~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdi 188 (635)
+..... ...++-.|+.. +..++.| . +--.+.|++.+++++ .++|+||||-.|.+.+-
T Consensus 58 ~~~~~~--~~~~~~~~~~~~sp~~a~~~~~----~-----~~~~~~i~~~~~~l~--------~~~D~viIEg~gg~~~~ 118 (222)
T PRK00090 58 GLPLDY--EDVNPYRFEEPLSPHLAAALEG----V-----AIDLEKISAALRRLA--------QQYDLVLVEGAGGLLVP 118 (222)
T ss_pred CCCCCh--hhcCceeeCCCCCHHHHHHHhC----C-----CCCHHHHHHHHHHHH--------hhCCEEEEECCCceecc
Confidence 433221 11122222111 1111121 1 123467888887764 46999999977765432
Q ss_pred --CcchHHHHHHHhhhhcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEEeeC
Q 006689 189 --ESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRST 253 (635)
Q Consensus 189 --es~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~KtKptQ~svk~Lrs~Gi~pd~iv~R~~ 253 (635)
.++-..+-+++ ++ --++.+.- +. .+. ..-|.-+++.++..|+...++|+...
T Consensus 119 ~~~~~~~adl~~~----l~-~pvilV~~---~~---~~~--i~~~~~~i~~l~~~~~~i~gvIlN~~ 172 (222)
T PRK00090 119 LTEDLTLADLAKQ----LQ-LPVILVVG---VK---LGC--INHTLLTLEAIRARGLPLAGWVANGI 172 (222)
T ss_pred CCCCCcHHHHHHH----hC-CCEEEEEC---CC---CcH--HHHHHHHHHHHHHCCCCeEEEEEccC
Confidence 11122223333 32 12333321 11 122 22356677788888999888887643
No 148
>PRK13768 GTPase; Provisional
Probab=80.40 E-value=7.2 Score=40.46 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=27.9
Q ss_pred CeEEEEccccccchh------hHHHHHHhcCcCCCCceeEEeccCCc
Q 006689 36 LQYMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFGLDPY 76 (635)
Q Consensus 36 ~k~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K~DpY 76 (635)
++.|+|+|- +|.| .++..|.. +|.+|..+.+||-
T Consensus 2 ~~~i~v~G~--~G~GKTt~~~~~~~~l~~-----~g~~v~~i~~D~~ 41 (253)
T PRK13768 2 MYIVFFLGT--AGSGKTTLTKALSDWLEE-----QGYDVAIVNLDPA 41 (253)
T ss_pred cEEEEEECC--CCccHHHHHHHHHHHHHh-----cCCceEEEECCCc
Confidence 567777776 8999 56777777 9999999999984
No 149
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=78.50 E-value=10 Score=39.64 Aligned_cols=108 Identities=19% Similarity=0.109 Sum_probs=64.5
Q ss_pred HHHHHHHHhcCCCCccEEEEEeccCCC-cchH-HHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhc
Q 006689 317 EWTSRAEICDGLHEPVRIAMVGKYTGL-SDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 394 (635)
Q Consensus 317 ~W~~lv~~~~~~~~~v~IalVGkY~~l-~DaY-~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L 394 (635)
-|+.+++..... ..||+++. ..+. .+.| ....++|+..|+..... .-+++.+ .. .+| +..+.+
T Consensus 16 i~~~~~~lag~~--~~rI~~ip-tAS~~~~~~~~~~~~~~~~lG~~~v~~---l~i~~r~--~a---~~~----~~~~~l 80 (250)
T TIGR02069 16 ILREFVSRAGGE--DAIIVIIT-SASEEPREVGERYITIFSRLGVKEVKI---LDVRERE--DA---SDE----NAIALL 80 (250)
T ss_pred HHHHHHHHhCCC--CceEEEEe-CCCCChHHHHHHHHHHHHHcCCceeEE---EecCChH--Hc---cCH----HHHHHH
Confidence 456666555432 35899994 3222 1122 34567888888853221 1222111 00 111 233568
Q ss_pred cCCCEEEECCCCCCC-----cchhHHHHHHHHHHcCCCEEEEehhHHHHH
Q 006689 395 KGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAV 439 (635)
Q Consensus 395 ~~~DGIllPGGfG~r-----g~eg~i~air~are~~iP~LGICLGmQlla 439 (635)
.++|+|+++||--.+ ...+...+++.+.+++.|+.|.--|.-+|+
T Consensus 81 ~~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~ 130 (250)
T TIGR02069 81 SNATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMS 130 (250)
T ss_pred hhCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhcc
Confidence 899999999983211 123566788888888999999999998875
No 150
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=75.72 E-value=3.4 Score=42.03 Aligned_cols=162 Identities=13% Similarity=0.078 Sum_probs=87.7
Q ss_pred CeEEEEccccccchh------hHHHHHHhcCcCCCCceeEEeccCCccccCCCCCCccCcceEEEccCCccccCCCCccc
Q 006689 36 LQYMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFGLDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYE 109 (635)
Q Consensus 36 ~k~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K~DpYlN~d~gtmsp~eHGEvfV~~DG~E~DlDlG~Ye 109 (635)
||-|||||- =.+.| .|.+.|+. +|++|..+| |.++|-.- + +++..|-|.--+.
T Consensus 2 ~~~ifIt~t-~t~vGKT~vt~~L~~~l~~-----~g~~v~~~K-------------Pi~~g~~~-~-~~~~~~~D~~~l~ 60 (231)
T PRK12374 2 LKRFFITGT-DTSVGKTVVSRALLQALAS-----QGKTVAGYK-------------PVAKGSKE-T-PEGLRNKDALVLQ 60 (231)
T ss_pred CceEEEEEC-CCCCCHHHHHHHHHHHHHH-----CCCeEEEEC-------------ccccCCcc-C-CCCCchHHHHHHH
Confidence 567899874 25566 67788999 999998766 78888432 2 2334454444455
Q ss_pred cccCCCCCCCC-c---ccchHhHHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCCcc
Q 006689 110 RFMDIKLTRDN-N---ITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTI 185 (635)
Q Consensus 110 Rfl~~~l~~~~-n---ittGkiy~~vi~kEr~g~ylG~tvQviPHit~~i~~~i~~~~~~pvd~~~~~~dv~i~EiGGTv 185 (635)
+..+.+.+-+. | .+.. ...++.+ +.+ -.++|.+++++++ .+.|++|||=-|-+
T Consensus 61 ~~~~~~~~~~~~~p~~~~~~------~a~~~~~-------~~i--~~~~i~~~~~~l~--------~~~D~VlVEGaGgl 117 (231)
T PRK12374 61 SVSSIELPYEAVNPIALSEE------ESSVAHS-------CPI--NYTLMSNGLANLS--------EKVDHVVVEGTGGW 117 (231)
T ss_pred HhcCCCCCHHhccCeecCCC------cChHHcC-------CcC--CHHHHHHHHHHHH--------hhCCEEEEECCCCc
Confidence 55555433211 1 1111 1111222 111 2357888887764 47899999966622
Q ss_pred cc--cCcchHHHHHHHhhhhcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEEeeCC
Q 006689 186 GD--IESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTV 254 (635)
Q Consensus 186 Gd--ies~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~KtKptQ~svk~Lrs~Gi~pd~iv~R~~~ 254 (635)
.. -+...+.+.++++ +-. +.+| + + ...|. .-=|.-+++.+++.|+..-++|+-...
T Consensus 118 ~~p~~~~~~~~d~~~~~----~~p-vilV--~--~--~~lg~--in~~lLt~~~l~~~~~~~~gvV~N~~~ 175 (231)
T PRK12374 118 RSLMNDLRPLSEWVVQE----QLP-VLMV--V--G--IQEGC--INHALLTAQAIANDGLPLIGWVANRIN 175 (231)
T ss_pred ceeccCcccHHHHHHHh----CCC-EEEE--E--C--CCcCh--HHHHHHHHHHHHhCCCcEEEEEEeCcc
Confidence 11 0112344444442 211 1111 1 0 01122 223445677788999999999986543
No 151
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=75.57 E-value=4.5 Score=41.92 Aligned_cols=44 Identities=25% Similarity=0.273 Sum_probs=34.9
Q ss_pred cCCCEEEECCC-CCCCc---chhHHHHHHHHHHcCCCEEEEehhHHHH
Q 006689 395 KGADGILVPGG-FGNRG---VQGKILAAKYAREHRIPYLGICLGMQVA 438 (635)
Q Consensus 395 ~~~DGIllPGG-fG~rg---~eg~i~air~are~~iP~LGICLGmQll 438 (635)
+.+|.|+|||| +|... .+-..+.++..-+.+.++..||-|=-++
T Consensus 66 ~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~a 113 (247)
T KOG2764|consen 66 SKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTA 113 (247)
T ss_pred ccccEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecchHHH
Confidence 68999999999 77643 3456677888778899999999986444
No 152
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=74.09 E-value=14 Score=39.19 Aligned_cols=39 Identities=10% Similarity=0.054 Sum_probs=31.5
Q ss_pred CCeEEEEccccccchh------hHHHHHHhcCcCCCCceeEEeccCCccccC
Q 006689 35 NLQYMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFGLDPYLNTD 80 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K~DpYlN~d 80 (635)
+++.|.|+|. .|-| .++..|.. +|++|..+.+||+-+.-
T Consensus 33 ~~~~i~i~G~--~G~GKttl~~~l~~~~~~-----~~~~v~~i~~D~~~~~~ 77 (300)
T TIGR00750 33 NAHRVGITGT--PGAGKSTLLEALGMELRR-----RGLKVAVIAVDPSSPFT 77 (300)
T ss_pred CceEEEEECC--CCCCHHHHHHHHHHHHHH-----CCCeEEEEecCCCCCcc
Confidence 4789999975 6666 77777888 89999999999975443
No 153
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=73.97 E-value=13 Score=37.64 Aligned_cols=108 Identities=17% Similarity=0.100 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCCCCccEEEEEeccCCC-cchH-HHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhc
Q 006689 317 EWTSRAEICDGLHEPVRIAMVGKYTGL-SDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL 394 (635)
Q Consensus 317 ~W~~lv~~~~~~~~~v~IalVGkY~~l-~DaY-~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L 394 (635)
-|+.+.+... ....+|+++. +... .+.| ....++++..|+..... +...+.+.. .+| +..+.+
T Consensus 17 i~~~~~~~ag--~~~~~i~~ip-tA~~~~~~~~~~~~~~~~~lG~~~v~~-----~~~~~~~~a---~~~----~~~~~l 81 (217)
T cd03145 17 ILQRFVARAG--GAGARIVVIP-AASEEPAEVGEEYRDVFERLGAREVEV-----LVIDSREAA---NDP----EVVARL 81 (217)
T ss_pred HHHHHHHHcC--CCCCcEEEEe-CCCcChhHHHHHHHHHHHHcCCceeEE-----eccCChHHc---CCH----HHHHHH
Confidence 3445555543 2357899994 5432 1222 34566777778753221 211111100 111 234568
Q ss_pred cCCCEEEECCCCCCC-----cchhHHHHHHHHHHcCCCEEEEehhHHHHH
Q 006689 395 KGADGILVPGGFGNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAV 439 (635)
Q Consensus 395 ~~~DGIllPGGfG~r-----g~eg~i~air~are~~iP~LGICLGmQlla 439 (635)
.++|+|+++||-=.+ ...+...+++.+.+++.|+.|+--|.-+++
T Consensus 82 ~~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~ 131 (217)
T cd03145 82 RDADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMS 131 (217)
T ss_pred HhCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhh
Confidence 899999999972211 113567788888889999999999998875
No 154
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.85 E-value=9.5 Score=40.80 Aligned_cols=36 Identities=36% Similarity=0.525 Sum_probs=30.2
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEehhH
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 435 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGICLGm 435 (635)
..+|-|++-||=|+ ++.+++.+...++|+|||=+|.
T Consensus 63 ~~~dlvi~lGGDGT-----~L~aa~~~~~~~~PilGIN~G~ 98 (292)
T PRK01911 63 GSADMVISIGGDGT-----FLRTATYVGNSNIPILGINTGR 98 (292)
T ss_pred cCCCEEEEECCcHH-----HHHHHHHhcCCCCCEEEEecCC
Confidence 46899999998553 6788888877899999999986
No 155
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=69.70 E-value=12 Score=36.66 Aligned_cols=87 Identities=14% Similarity=0.148 Sum_probs=53.4
Q ss_pred HhHHHHHhhhhcCCCCCCeeEEccc------ch-----HHHHHHH-HHHhcccCCCCCCCCcEEEEeeCCcccccCcch-
Q 006689 126 KIYQSVIDKERKGDYLGKTVQVVPH------IT-----DEIQDWI-ERVAMIPVDGKEGPVDVCVIELGGTIGDIESMP- 192 (635)
Q Consensus 126 kiy~~vi~kEr~g~ylG~tvQviPH------it-----~~i~~~i-~~~~~~pvd~~~~~~dv~i~EiGGTvGdies~p- 192 (635)
.-|...++....-.+.+..++|+.. ++ ....+++ +.+.. ..+||+|+|.+|.- |+-...
T Consensus 21 ~~w~~~l~~~l~~~~~~~~~~v~N~Gi~G~t~~~~~~~~~~l~r~~~~v~~------~~~p~~vii~~G~N--D~~~~~~ 92 (204)
T cd01830 21 NRWPDLLAARLAARAGTRGIAVLNAGIGGNRLLADGLGPSALARFDRDVLS------QPGVRTVIILEGVN--DIGASGT 92 (204)
T ss_pred CcCHHHHHHHHHhccCCCCcEEEECCccCcccccCCCChHHHHHHHHHHhc------CCCCCEEEEecccc--ccccccc
Confidence 5677777655555556666777653 11 2344444 44432 34799999998864 764322
Q ss_pred -----------HHHHHHHhhhhcCCCCEEEEeeeeeeee
Q 006689 193 -----------FIEALGQFSYRVGPGNFCLIHVSLVPVL 220 (635)
Q Consensus 193 -----------f~ea~rq~~~~~g~~n~~~ihv~~vp~~ 220 (635)
|.+.+++|-.++-+.+.-.|..|+-|+.
T Consensus 93 ~~~~~~~~~~~~~~~l~~ii~~~~~~~~~vil~t~~P~~ 131 (204)
T cd01830 93 DFAAAPVTAEELIAGYRQLIRRAHARGIKVIGATITPFE 131 (204)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHCCCeEEEecCCCCC
Confidence 7777888877766556666666666643
No 156
>PLN02929 NADH kinase
Probab=69.19 E-value=7.2 Score=42.00 Aligned_cols=66 Identities=23% Similarity=0.268 Sum_probs=45.9
Q ss_pred CcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcchhHHHHHHHHH
Q 006689 343 LSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYAR 422 (635)
Q Consensus 343 l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~eg~i~air~ar 422 (635)
++++...+.+.|+.+|+++... ...++ .+.+.++|.|++-||=|+ ++.+++.+
T Consensus 32 h~~~~~~~~~~L~~~gi~~~~v------~r~~~---------------~~~~~~~Dlvi~lGGDGT-----~L~aa~~~- 84 (301)
T PLN02929 32 HKDTVNFCKDILQQKSVDWECV------LRNEL---------------SQPIRDVDLVVAVGGDGT-----LLQASHFL- 84 (301)
T ss_pred hHHHHHHHHHHHHHcCCEEEEe------ecccc---------------ccccCCCCEEEEECCcHH-----HHHHHHHc-
Confidence 3445667788899999876331 11111 023567899999998553 67788888
Q ss_pred HcCCCEEEEehhH
Q 006689 423 EHRIPYLGICLGM 435 (635)
Q Consensus 423 e~~iP~LGICLGm 435 (635)
..++|++||=.|.
T Consensus 85 ~~~iPvlGIN~Gp 97 (301)
T PLN02929 85 DDSIPVLGVNSDP 97 (301)
T ss_pred CCCCcEEEEECCC
Confidence 7789999998883
No 157
>PRK14974 cell division protein FtsY; Provisional
Probab=68.86 E-value=59 Score=35.57 Aligned_cols=35 Identities=6% Similarity=0.038 Sum_probs=28.2
Q ss_pred CCeEEEEccccccchh------hHHHHHHhcCcCCCCceeEEeccCCc
Q 006689 35 NLQYMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFGLDPY 76 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K~DpY 76 (635)
+.+.|.++| ..|.| .++..|+. +|++|..+-.|+|
T Consensus 139 ~~~vi~~~G--~~GvGKTTtiakLA~~l~~-----~g~~V~li~~Dt~ 179 (336)
T PRK14974 139 KPVVIVFVG--VNGTGKTTTIAKLAYYLKK-----NGFSVVIAAGDTF 179 (336)
T ss_pred CCeEEEEEc--CCCCCHHHHHHHHHHHHHH-----cCCeEEEecCCcC
Confidence 357888998 77888 46677778 8999999888877
No 158
>PRK10867 signal recognition particle protein; Provisional
Probab=67.70 E-value=64 Score=36.54 Aligned_cols=65 Identities=18% Similarity=0.314 Sum_probs=40.9
Q ss_pred CCCCcEEEEeeCCcccccCcchHHHHHHHhhhhcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhc--CCCcccEE
Q 006689 171 EGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRG--QGLTPNIL 248 (635)
Q Consensus 171 ~~~~dv~i~EiGGTvGdies~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~KtKptQ~svk~Lrs--~Gi~pd~i 248 (635)
...+|+|||...|-..- ...-++.+.++...+.+..+++| +.+. | .|.+++..+. ..+..+++
T Consensus 181 ~~~~DvVIIDTaGrl~~--d~~lm~eL~~i~~~v~p~evllV-------lda~----~--gq~av~~a~~F~~~~~i~gi 245 (433)
T PRK10867 181 ENGYDVVIVDTAGRLHI--DEELMDELKAIKAAVNPDEILLV-------VDAM----T--GQDAVNTAKAFNEALGLTGV 245 (433)
T ss_pred hcCCCEEEEeCCCCccc--CHHHHHHHHHHHHhhCCCeEEEE-------Eecc----c--HHHHHHHHHHHHhhCCCCEE
Confidence 45789999999998762 23556788888887766654322 3221 2 2666555443 24666788
Q ss_pred EE
Q 006689 249 AC 250 (635)
Q Consensus 249 v~ 250 (635)
|+
T Consensus 246 Il 247 (433)
T PRK10867 246 IL 247 (433)
T ss_pred EE
Confidence 87
No 159
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=66.63 E-value=31 Score=41.07 Aligned_cols=31 Identities=10% Similarity=0.116 Sum_probs=25.0
Q ss_pred CeEEEEccccccchh------hHHHHHHhcCcCCCCceeEEec
Q 006689 36 LQYMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFG 72 (635)
Q Consensus 36 ~k~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K 72 (635)
||-|||+| .=++.| .|.+.|+. +|++|...|
T Consensus 2 ~k~l~I~~-T~t~~GKT~vslgL~~~L~~-----~G~~Vg~fK 38 (684)
T PRK05632 2 SRSIYLAP-TGTGVGLTSVSLGLMRALER-----KGVKVGFFK 38 (684)
T ss_pred CcEEEEEE-CCCCCCHHHHHHHHHHHHHh-----CCCeEEEeC
Confidence 67888885 346666 67788999 999999999
No 160
>PRK05866 short chain dehydrogenase; Provisional
Probab=66.56 E-value=8.1 Score=40.41 Aligned_cols=53 Identities=9% Similarity=-0.006 Sum_probs=34.7
Q ss_pred eccccchhhhc--CCcceecccCCCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 13 FLGFKPFLQQL--KCPTFLLYAPLNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 13 ~~~~~~~~~~~--~~~~~~~~~~~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
-+|..|+.+-+ +++.--....+..|.|+|||| -|||| ++.+.|.. +|++|..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~vlItGa-sggIG~~la~~La~-----~G~~Vi~~ 70 (293)
T PRK05866 15 LAGMRPPISPQLLINRPPRQPVDLTGKRILLTGA-SSGIGEAAAEQFAR-----RGATVVAV 70 (293)
T ss_pred HhccCCCCCchhhcCCCCCCCcCCCCCEEEEeCC-CcHHHHHHHHHHHH-----CCCEEEEE
Confidence 35677776532 223111111123488999998 69999 99999988 89988764
No 161
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.95 E-value=14 Score=39.92 Aligned_cols=36 Identities=42% Similarity=0.659 Sum_probs=30.3
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEehhH
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 435 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGICLGm 435 (635)
.++|.|++-||=|+ ++.+++.+...++|+|||=+|.
T Consensus 71 ~~~D~vi~lGGDGT-----~L~aar~~~~~~~PilGIN~G~ 106 (306)
T PRK03372 71 DGCELVLVLGGDGT-----ILRAAELARAADVPVLGVNLGH 106 (306)
T ss_pred cCCCEEEEEcCCHH-----HHHHHHHhccCCCcEEEEecCC
Confidence 46899999998553 6888888888899999999885
No 162
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=65.90 E-value=14 Score=38.25 Aligned_cols=75 Identities=13% Similarity=0.109 Sum_probs=42.3
Q ss_pred CCCcEEEEeeCCccccc-CcchHHHHHHHhhhhcCCCC-EEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEE
Q 006689 172 GPVDVCVIELGGTIGDI-ESMPFIEALGQFSYRVGPGN-FCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILA 249 (635)
Q Consensus 172 ~~~dv~i~EiGGTvGdi-es~pf~ea~rq~~~~~g~~n-~~~ihv~~vp~~~~~~e~KtKptQ~svk~Lrs~Gi~pd~iv 249 (635)
.++|++|+-..-| |+. .=+-+-++++.++..+-... ..++ -+.. .+..--.-++.+++.|+..|+...++|
T Consensus 123 ~~yD~VVvDtpPt-g~tlrlL~lp~~l~~~~~~l~d~~~~~~v-----lV~~-p~~~~~~e~~r~~~~L~~~g~~v~gvV 195 (254)
T cd00550 123 AEYDVVVFDTAPT-GHTLRLLSLPTVLSWAREILSDPERTSFR-----LVCI-PEKMSLYETERAIQELAKYGIDVDAVI 195 (254)
T ss_pred CCCCEEEECCCCc-HHHHHHHHhHHHHHHHHHHhcCCcceEEE-----EEeC-CChhHHHHHHHHHHHHHHCCCCCCEEE
Confidence 4799999998876 321 11111244444333332222 2222 2221 233344457788899999999999999
Q ss_pred EeeC
Q 006689 250 CRST 253 (635)
Q Consensus 250 ~R~~ 253 (635)
+-..
T Consensus 196 ~N~v 199 (254)
T cd00550 196 VNQL 199 (254)
T ss_pred EecC
Confidence 8643
No 163
>PRK06179 short chain dehydrogenase; Provisional
Probab=65.21 E-value=7.4 Score=39.44 Aligned_cols=34 Identities=9% Similarity=-0.058 Sum_probs=29.4
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccCC
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLDP 75 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~Dp 75 (635)
.|.|+||||- |+|| ++.+.|.. +|++|..+--||
T Consensus 4 ~~~vlVtGas-g~iG~~~a~~l~~-----~g~~V~~~~r~~ 38 (270)
T PRK06179 4 SKVALVTGAS-SGIGRATAEKLAR-----AGYRVFGTSRNP 38 (270)
T ss_pred CCEEEEecCC-CHHHHHHHHHHHH-----CCCEEEEEeCCh
Confidence 4789999985 9999 99999999 999999877665
No 164
>PRK05854 short chain dehydrogenase; Provisional
Probab=64.95 E-value=8.8 Score=40.54 Aligned_cols=33 Identities=9% Similarity=-0.076 Sum_probs=27.7
Q ss_pred CCCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 33 PLNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 33 ~~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
.++.|.++||||- |||| .+.+.|-. +|++|.+.
T Consensus 11 ~l~gk~~lITGas-~GIG~~~a~~La~-----~G~~Vil~ 44 (313)
T PRK05854 11 DLSGKRAVVTGAS-DGLGLGLARRLAA-----AGAEVILP 44 (313)
T ss_pred ccCCCEEEEeCCC-ChHHHHHHHHHHH-----CCCEEEEE
Confidence 3456899999995 9999 89998888 89988765
No 165
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=63.54 E-value=18 Score=36.23 Aligned_cols=43 Identities=19% Similarity=0.084 Sum_probs=30.9
Q ss_pred HhccCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEehh
Q 006689 392 KLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 434 (635)
Q Consensus 392 ~~L~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGICLG 434 (635)
+.|+++|.||+...+++.-.....++++...+++.+++||.-+
T Consensus 48 ~~L~~~Dvvv~~~~~~~~l~~~~~~al~~~v~~Ggglv~lH~~ 90 (217)
T PF06283_consen 48 ENLKGYDVVVFYNTGGDELTDEQRAALRDYVENGGGLVGLHGA 90 (217)
T ss_dssp HCHCT-SEEEEE-SSCCGS-HHHHHHHHHHHHTT-EEEEEGGG
T ss_pred hHhcCCCEEEEECCCCCcCCHHHHHHHHHHHHcCCCEEEEccc
Confidence 4589999999999776544456677888888899999999843
No 166
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.94 E-value=23 Score=37.99 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=30.0
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEehhH
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 435 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGICLGm 435 (635)
..+|-+++-||=|+ ++.+++.+...++|+|||=+|.
T Consensus 67 ~~~D~vi~lGGDGT-----~L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 67 QYCDLVAVLGGDGT-----FLSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred cCCCEEEEECCcHH-----HHHHHHHhcccCCCEEEEecCC
Confidence 46899999998553 6788888777899999999986
No 167
>PRK07890 short chain dehydrogenase; Provisional
Probab=62.92 E-value=8.9 Score=38.37 Aligned_cols=32 Identities=3% Similarity=-0.081 Sum_probs=27.6
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEecc
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGL 73 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~ 73 (635)
-|.|||||| -|+|| ++.+.|-+ +|++|.+.-.
T Consensus 5 ~k~vlItGa-~~~IG~~la~~l~~-----~G~~V~~~~r 37 (258)
T PRK07890 5 GKVVVVSGV-GPGLGRTLAVRAAR-----AGADVVLAAR 37 (258)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHH-----cCCEEEEEeC
Confidence 478999999 78999 99999999 9999988644
No 168
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=62.84 E-value=45 Score=33.44 Aligned_cols=85 Identities=15% Similarity=0.141 Sum_probs=44.4
Q ss_pred EEEEEeccCCCcchH-HHHHHHHHHccccc---eeeeEEEEecCCCCCccccCCChhhhhHHHHhc--cCCCEEEECCCC
Q 006689 333 RIAMVGKYTGLSDAY-LSILKALLHASVDL---RKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGF 406 (635)
Q Consensus 333 ~IalVGkY~~l~DaY-~SI~~AL~~ag~~~---~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIllPGGf 406 (635)
|||++-. ...+.| .++.++++++.-+. +..+++...++.. +++...++.+.+ .++|||++.+.
T Consensus 1 ~Ig~i~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~--------~~~~~~~~~~~~~~~~vdgiIi~~~- 69 (272)
T cd06300 1 KIGLSNS--YAGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSADG--------DVAQQIADIRNLIAQGVDAIIINPA- 69 (272)
T ss_pred CeEEecc--ccCChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCC--------CHHHHHHHHHHHHHcCCCEEEEeCC-
Confidence 4677632 233444 45777776665555 4433344444332 111222222222 48999999763
Q ss_pred CCCcchhHHHHHHHHHHcCCCEEEE
Q 006689 407 GNRGVQGKILAAKYAREHRIPYLGI 431 (635)
Q Consensus 407 G~rg~eg~i~air~are~~iP~LGI 431 (635)
+. ......++.+.+.++|+..+
T Consensus 70 -~~--~~~~~~l~~~~~~~iPvv~~ 91 (272)
T cd06300 70 -SP--TALNPVIEEACEAGIPVVSF 91 (272)
T ss_pred -Ch--hhhHHHHHHHHHCCCeEEEE
Confidence 21 11123456677789998875
No 169
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=62.77 E-value=17 Score=38.75 Aligned_cols=90 Identities=20% Similarity=0.240 Sum_probs=51.1
Q ss_pred cEEEEEeccCCCc--chHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCC
Q 006689 332 VRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR 409 (635)
Q Consensus 332 v~IalVGkY~~l~--DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~r 409 (635)
.+|+++.+...-. .....+.+.|+..++++.+. . ..+..+..... + .+ ...+....+|.|++-||=|.
T Consensus 6 ~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~--~--~~~~~~~~~~~---~-~~-~~~~~~~~~d~vi~~GGDGt- 75 (291)
T PRK02155 6 KTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFE--A--DTARNIGLTGY---P-AL-TPEEIGARADLAVVLGGDGT- 75 (291)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe--c--chhhhcCcccc---c-cc-ChhHhccCCCEEEEECCcHH-
Confidence 3599997765422 12355667787777664432 0 01111100000 0 00 01122346899999998553
Q ss_pred cchhHHHHHHHHHHcCCCEEEEehhH
Q 006689 410 GVQGKILAAKYAREHRIPYLGICLGM 435 (635)
Q Consensus 410 g~eg~i~air~are~~iP~LGICLGm 435 (635)
++.+++.....++|+|||=+|.
T Consensus 76 ----~l~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 76 ----MLGIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred ----HHHHHHHhcCCCCCEEEEcCCC
Confidence 6777877766789999999886
No 170
>PRK06924 short chain dehydrogenase; Provisional
Probab=62.41 E-value=8.9 Score=38.28 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=26.1
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
||.|+||||- ++|| +|.+-|-+ +|++|..+
T Consensus 1 ~k~vlItGas-ggiG~~ia~~l~~-----~g~~V~~~ 31 (251)
T PRK06924 1 MRYVIITGTS-QGLGEAIANQLLE-----KGTHVISI 31 (251)
T ss_pred CcEEEEecCC-chHHHHHHHHHHh-----cCCEEEEE
Confidence 5899999865 8999 99999999 89998875
No 171
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.36 E-value=19 Score=38.82 Aligned_cols=36 Identities=31% Similarity=0.325 Sum_probs=29.7
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEehhH
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 435 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGICLGm 435 (635)
.++|-+++-||=|+ ++.+++.+...++|+|||=+|.
T Consensus 67 ~~~Dlvi~iGGDGT-----lL~aar~~~~~~iPilGIN~G~ 102 (305)
T PRK02649 67 SSMKFAIVLGGDGT-----VLSAARQLAPCGIPLLTINTGH 102 (305)
T ss_pred cCcCEEEEEeCcHH-----HHHHHHHhcCCCCcEEEEeCCC
Confidence 46899999998553 6788888777899999998874
No 172
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.32 E-value=21 Score=38.07 Aligned_cols=85 Identities=26% Similarity=0.177 Sum_probs=50.2
Q ss_pred cEEEEEeccCCCcchH---HHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCC
Q 006689 332 VRIAMVGKYTGLSDAY---LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGN 408 (635)
Q Consensus 332 v~IalVGkY~~l~DaY---~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~ 408 (635)
.+|+++.+... ++. ..+.+.|+..++++.+. ...+..+.... +. ..+...++|-+++=||=|+
T Consensus 11 ~~i~ii~~~~~--~~~~~~~~i~~~l~~~g~~~~~~----~~~~~~~~~~~-------~~-~~~~~~~~Dlvi~iGGDGT 76 (287)
T PRK14077 11 KKIGLVTRPNV--SLDKEILKLQKILSIYKVEILLE----KESAEILDLPG-------YG-LDELFKISDFLISLGGDGT 76 (287)
T ss_pred CEEEEEeCCcH--HHHHHHHHHHHHHHHCCCEEEEe----cchhhhhcccc-------cc-hhhcccCCCEEEEECCCHH
Confidence 46999976543 232 34455676677665432 11111111000 00 0122347899999998553
Q ss_pred CcchhHHHHHHHHHHcCCCEEEEehhH
Q 006689 409 RGVQGKILAAKYAREHRIPYLGICLGM 435 (635)
Q Consensus 409 rg~eg~i~air~are~~iP~LGICLGm 435 (635)
++.+++.+...++|+|||=+|.
T Consensus 77 -----~L~aa~~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 77 -----LISLCRKAAEYDKFVLGIHAGH 98 (287)
T ss_pred -----HHHHHHHhcCCCCcEEEEeCCC
Confidence 6788888877899999999886
No 173
>PRK08177 short chain dehydrogenase; Provisional
Probab=61.08 E-value=10 Score=37.51 Aligned_cols=33 Identities=3% Similarity=-0.183 Sum_probs=27.9
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccC
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLD 74 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~D 74 (635)
||-++|||| -++|| ++.+.|.. +|++|..+-.+
T Consensus 1 ~k~vlItG~-sg~iG~~la~~l~~-----~G~~V~~~~r~ 34 (225)
T PRK08177 1 KRTALIIGA-SRGLGLGLVDRLLE-----RGWQVTATVRG 34 (225)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHh-----CCCEEEEEeCC
Confidence 578999999 58999 99999999 89999876544
No 174
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=60.51 E-value=1e+02 Score=30.98 Aligned_cols=34 Identities=9% Similarity=0.030 Sum_probs=25.1
Q ss_pred eEEEEccccccchh------hHHHHHHhcCcCCCCceeEEeccCCc
Q 006689 37 QYMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFGLDPY 76 (635)
Q Consensus 37 k~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K~DpY 76 (635)
|-|.|+++ =.|.| .++..|.. +|++|-.+-.||-
T Consensus 2 ~ii~v~s~-kGGvGKTt~a~~lA~~la~-----~g~~vlliD~D~~ 41 (261)
T TIGR01968 2 RVIVITSG-KGGVGKTTTTANLGTALAR-----LGKKVVLIDADIG 41 (261)
T ss_pred eEEEEecC-CCCccHHHHHHHHHHHHHH-----cCCeEEEEECCCC
Confidence 44555432 34556 78888888 9999999999984
No 175
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=60.27 E-value=1.4e+02 Score=31.51 Aligned_cols=37 Identities=8% Similarity=0.003 Sum_probs=30.3
Q ss_pred CCCCeEEEEccccccchh------hHHHHHHhcCcCCCCceeEEeccCCc
Q 006689 33 PLNLQYMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFGLDPY 76 (635)
Q Consensus 33 ~~~~k~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K~DpY 76 (635)
..+.+.|.++| ..|.| .|+..|.. .|++|..+-.|+|
T Consensus 69 ~~~~~vi~l~G--~~G~GKTTt~akLA~~l~~-----~g~~V~li~~D~~ 111 (272)
T TIGR00064 69 ENKPNVILFVG--VNGVGKTTTIAKLANKLKK-----QGKSVLLAAGDTF 111 (272)
T ss_pred CCCCeEEEEEC--CCCCcHHHHHHHHHHHHHh-----cCCEEEEEeCCCC
Confidence 34468888886 88999 67777777 8999999999986
No 176
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=60.26 E-value=34 Score=35.52 Aligned_cols=69 Identities=25% Similarity=0.284 Sum_probs=41.3
Q ss_pred HHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCC---cchhHHHH-HHHHHHcCC
Q 006689 351 LKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR---GVQGKILA-AKYAREHRI 426 (635)
Q Consensus 351 ~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~r---g~eg~i~a-ir~are~~i 426 (635)
++.|+.-.... ..+..|++..|..+. | .++-..+++|||-.-+ ...+++.+ |+....++-
T Consensus 20 v~sLr~~~~p~---y~v~~V~~~~Li~Ep-----------W--~~~T~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG 83 (253)
T COG4285 20 VRSLRLFAPPY---YAVDRVDAQFLIKEP-----------W--EETTLLLVFPGGADLPYVQVLQGLGTARIKNYVKEGG 83 (253)
T ss_pred HHHHHhhccch---heEEEeeeheeecCc-----------c--hhceEEEEecCCCCchHHHHhcchhhhhHHHHHhcCC
Confidence 45565554443 356678887775321 3 2455678999985443 23444333 444445677
Q ss_pred CEEEEehhH
Q 006689 427 PYLGICLGM 435 (635)
Q Consensus 427 P~LGICLGm 435 (635)
-+||||.|-
T Consensus 84 ~fLGiCAG~ 92 (253)
T COG4285 84 NFLGICAGG 92 (253)
T ss_pred eEEEEeccc
Confidence 899999984
No 177
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=59.09 E-value=9.8 Score=36.26 Aligned_cols=73 Identities=19% Similarity=0.178 Sum_probs=46.1
Q ss_pred HHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCC-----cchhHHHHHHHHHH
Q 006689 349 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKILAAKYARE 423 (635)
Q Consensus 349 SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~r-----g~eg~i~air~are 423 (635)
.+.++|...|+++. +++-.+.+ ..+..+.+.++|+|++.||-=.+ ...++..+++.+..
T Consensus 4 ~~~~~f~~~g~~v~------~l~~~~~~----------~~~~~~~i~~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~ 67 (154)
T PF03575_consen 4 KFRKAFRKLGFEVD------QLDLSDRN----------DADILEAIREADAIFLGGGDTFRLLRQLKETGLDEAIREAYR 67 (154)
T ss_dssp HHHHHHHHCT-EEE------ECCCTSCG----------HHHHHHHHHHSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEE------EEeccCCC----------hHHHHHHHHhCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHH
Confidence 45678888887633 34322211 11344567899999999972111 12457888999888
Q ss_pred cCCCEEEEehhHHH
Q 006689 424 HRIPYLGICLGMQV 437 (635)
Q Consensus 424 ~~iP~LGICLGmQl 437 (635)
++.|+.|+--|.-+
T Consensus 68 ~G~vi~G~SAGA~i 81 (154)
T PF03575_consen 68 KGGVIIGTSAGAMI 81 (154)
T ss_dssp TTSEEEEETHHHHC
T ss_pred CCCEEEEEChHHhh
Confidence 89999999998854
No 178
>PRK08703 short chain dehydrogenase; Provisional
Probab=59.07 E-value=12 Score=37.08 Aligned_cols=32 Identities=6% Similarity=-0.006 Sum_probs=26.9
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
|+.|.++|||| -++|| ++.+.|.+ +|++|...
T Consensus 4 l~~k~vlItG~-sggiG~~la~~l~~-----~g~~V~~~ 36 (239)
T PRK08703 4 LSDKTILVTGA-SQGLGEQVAKAYAA-----AGATVILV 36 (239)
T ss_pred CCCCEEEEECC-CCcHHHHHHHHHHH-----cCCEEEEE
Confidence 44589999987 79999 99999998 89988763
No 179
>PRK06953 short chain dehydrogenase; Provisional
Probab=58.79 E-value=11 Score=37.16 Aligned_cols=33 Identities=9% Similarity=-0.049 Sum_probs=27.5
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccC
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLD 74 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~D 74 (635)
||.++||||- |+|| .+.+.|.. +|++|..+-.+
T Consensus 1 ~~~vlvtG~s-g~iG~~la~~L~~-----~G~~v~~~~r~ 34 (222)
T PRK06953 1 MKTVLIVGAS-RGIGREFVRQYRA-----DGWRVIATARD 34 (222)
T ss_pred CceEEEEcCC-CchhHHHHHHHHh-----CCCEEEEEECC
Confidence 5789999995 9999 88888888 89999887443
No 180
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.53 E-value=12 Score=37.68 Aligned_cols=35 Identities=9% Similarity=-0.110 Sum_probs=29.0
Q ss_pred CCCeEEEEcccc-ccchh-hHHHHHHhcCcCCCCceeEEecc
Q 006689 34 LNLQYMFLCLNE-CACIN-FFSLFLVQNCQYHPNTHFNLFGL 73 (635)
Q Consensus 34 ~~~k~i~vtggv-~s~lg-s~g~ll~~~~~~~~g~~v~~~K~ 73 (635)
++.|-|+||||- .|||| .+.+.|.. +|++|...=-
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~-----~G~~vi~~~r 39 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAA-----KGIDIFFTYW 39 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHH-----cCCcEEEEcC
Confidence 345889999998 58999 99999999 8999887633
No 181
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.33 E-value=21 Score=37.69 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=28.3
Q ss_pred CCCEEEECCCCCCCcchhHHHHHHHHHH--cCCCEEEEehhH
Q 006689 396 GADGILVPGGFGNRGVQGKILAAKYARE--HRIPYLGICLGM 435 (635)
Q Consensus 396 ~~DGIllPGGfG~rg~eg~i~air~are--~~iP~LGICLGm 435 (635)
++|.+++=||=|+ ++.+++.+.. .++|++||=+|.
T Consensus 35 ~~Dlvi~iGGDGT-----~L~a~~~~~~~~~~iPilGIN~G~ 71 (265)
T PRK04885 35 NPDIVISVGGDGT-----LLSAFHRYENQLDKVRFVGVHTGH 71 (265)
T ss_pred CCCEEEEECCcHH-----HHHHHHHhcccCCCCeEEEEeCCC
Confidence 5699999998553 6778887776 689999999886
No 182
>PLN02727 NAD kinase
Probab=58.00 E-value=22 Score=43.59 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=30.4
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEehhH
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 435 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGICLGm 435 (635)
..+|.||+=||=|+ ++.+++.....++|+|||=+|.
T Consensus 742 ~~~DLVIvLGGDGT-----lLrAar~~~~~~iPILGINlGr 777 (986)
T PLN02727 742 ERVDFVACLGGDGV-----ILHASNLFRGAVPPVVSFNLGS 777 (986)
T ss_pred cCCCEEEEECCcHH-----HHHHHHHhcCCCCCEEEEeCCC
Confidence 46899999998553 7888888888899999999985
No 183
>PRK12742 oxidoreductase; Provisional
Probab=57.90 E-value=13 Score=36.70 Aligned_cols=31 Identities=6% Similarity=0.012 Sum_probs=26.2
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
++.|.|+|||| -|+|| .+.+.|.+ +|++|..
T Consensus 4 ~~~k~vlItGa-sggIG~~~a~~l~~-----~G~~v~~ 35 (237)
T PRK12742 4 FTGKKVLVLGG-SRGIGAAIVRRFVT-----DGANVRF 35 (237)
T ss_pred CCCCEEEEECC-CChHHHHHHHHHHH-----CCCEEEE
Confidence 44689999988 79999 89999999 8988765
No 184
>PRK06398 aldose dehydrogenase; Validated
Probab=57.72 E-value=13 Score=37.84 Aligned_cols=32 Identities=13% Similarity=-0.002 Sum_probs=27.6
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
++.|.++|||| -+||| ++.+.|.. +|++|...
T Consensus 4 l~gk~vlItGa-s~gIG~~ia~~l~~-----~G~~Vi~~ 36 (258)
T PRK06398 4 LKDKVAIVTGG-SQGIGKAVVNRLKE-----EGSNVINF 36 (258)
T ss_pred CCCCEEEEECC-CchHHHHHHHHHHH-----CCCeEEEE
Confidence 44689999998 58999 99999999 99999865
No 185
>PRK06194 hypothetical protein; Provisional
Probab=57.15 E-value=13 Score=38.01 Aligned_cols=32 Identities=6% Similarity=-0.051 Sum_probs=27.2
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
++.|-|+||||- ++|| .+.+.|-. +|++|..+
T Consensus 4 ~~~k~vlVtGas-ggIG~~la~~l~~-----~G~~V~~~ 36 (287)
T PRK06194 4 FAGKVAVITGAA-SGFGLAFARIGAA-----LGMKLVLA 36 (287)
T ss_pred CCCCEEEEeCCc-cHHHHHHHHHHHH-----CCCEEEEE
Confidence 445789999997 8999 99999988 89998875
No 186
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=57.15 E-value=19 Score=29.60 Aligned_cols=27 Identities=7% Similarity=0.070 Sum_probs=21.4
Q ss_pred EEEccccccchh------hHHHHHHhcCcCCCCceeEEec
Q 006689 39 MFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFG 72 (635)
Q Consensus 39 i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K 72 (635)
|+++|.- |.| .++..|+. .|++|..++
T Consensus 2 ~~~~g~~--G~Gktt~~~~l~~~l~~-----~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKG--GVGKTTLAANLAAALAK-----RGKRVLLID 34 (99)
T ss_pred EEEECCC--CCCHHHHHHHHHHHHHH-----CCCeEEEEC
Confidence 5666655 777 78888888 999999877
No 187
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=56.85 E-value=1.2e+02 Score=34.40 Aligned_cols=139 Identities=16% Similarity=0.172 Sum_probs=81.7
Q ss_pred CeEEEEccccccchh------hHHHHHHhcCcCCCCceeEEeccCCccccCCCCCCccCcceEEEccCCccccCCCCccc
Q 006689 36 LQYMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFGLDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYE 109 (635)
Q Consensus 36 ~k~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K~DpYlN~d~gtmsp~eHGEvfV~~DG~E~DlDlG~Ye 109 (635)
.+.|.+.|- .|.| .|+..|.. +|++|..+-.|||- +|..+-.
T Consensus 241 ~~vI~LVGp--tGvGKTTTiaKLA~~L~~-----~GkkVglI~aDt~R---iaAvEQL---------------------- 288 (436)
T PRK11889 241 VQTIALIGP--TGVGKTTTLAKMAWQFHG-----KKKTVGFITTDHSR---IGTVQQL---------------------- 288 (436)
T ss_pred CcEEEEECC--CCCcHHHHHHHHHHHHHH-----cCCcEEEEecCCcc---hHHHHHH----------------------
Confidence 467777776 8888 55666677 89999999999885 1211111
Q ss_pred cccCCCCCCCCcccchHhHHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCCcccccC
Q 006689 110 RFMDIKLTRDNNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIE 189 (635)
Q Consensus 110 Rfl~~~l~~~~nittGkiy~~vi~kEr~g~ylG~tvQviPHit~~i~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdie 189 (635)
+.|. +-+|-.|-++. -.+++++.|..++. ..+.|+|||...|.-- -
T Consensus 289 ----------------k~ya---------e~lgipv~v~~-d~~~L~~aL~~lk~------~~~~DvVLIDTaGRs~--k 334 (436)
T PRK11889 289 ----------------QDYV---------KTIGFEVIAVR-DEAAMTRALTYFKE------EARVDYILIDTAGKNY--R 334 (436)
T ss_pred ----------------HHHh---------hhcCCcEEecC-CHHHHHHHHHHHHh------ccCCCEEEEeCccccC--c
Confidence 0111 11343333222 24677788877752 2368999999888833 3
Q ss_pred cchHHHHHHHhhhhcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEEe
Q 006689 190 SMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACR 251 (635)
Q Consensus 190 s~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~KtKptQ~svk~Lrs~Gi~pd~iv~R 251 (635)
...-++.++++.....+..+++ | +++ -.|.+-....++.++. +.+|.+|.-
T Consensus 335 d~~lm~EL~~~lk~~~PdevlL-----V--LsA--Ttk~~d~~~i~~~F~~--~~idglI~T 385 (436)
T PRK11889 335 ASETVEEMIETMGQVEPDYICL-----T--LSA--SMKSKDMIEIITNFKD--IHIDGIVFT 385 (436)
T ss_pred CHHHHHHHHHHHhhcCCCeEEE-----E--ECC--ccChHHHHHHHHHhcC--CCCCEEEEE
Confidence 3455666777665555443322 2 433 2333334456666766 556888763
No 188
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=56.18 E-value=56 Score=32.50 Aligned_cols=74 Identities=26% Similarity=0.478 Sum_probs=56.6
Q ss_pred cchHhHHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCCcc---ccc----------C
Q 006689 123 TTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTI---GDI----------E 189 (635)
Q Consensus 123 ttGkiy~~vi~kEr~g~ylG~tvQviPHit~~i~~~i~~~~~~pvd~~~~~~dv~i~EiGGTv---Gdi----------e 189 (635)
+||++-.+.++. .|..+ -..++||-=-+.|+..+..++. .. .|++|+ .|||= .|+ -
T Consensus 27 ~sG~~l~~~L~~--ag~~~-~~~~iV~D~~~~I~~~l~~~~~------~~-~Dvvlt-tGGTG~t~RDvTpEA~~~~~dK 95 (169)
T COG0521 27 KSGPLLVELLEE--AGHNV-AAYTIVPDDKEQIRATLIALID------ED-VDVVLT-TGGTGITPRDVTPEATRPLFDK 95 (169)
T ss_pred cchhHHHHHHHH--cCCcc-ceEEEeCCCHHHHHHHHHHHhc------CC-CCEEEE-cCCccCCCCcCCHHHHHHHHhc
Confidence 499998888864 57777 7889999999999999999873 33 777665 78982 232 1
Q ss_pred cch-HHHHHHHhhhhc-CCC
Q 006689 190 SMP-FIEALGQFSYRV-GPG 207 (635)
Q Consensus 190 s~p-f~ea~rq~~~~~-g~~ 207 (635)
-+| |-|++|++.++. |..
T Consensus 96 eipGFgE~fR~~S~~~~g~~ 115 (169)
T COG0521 96 EIPGFGELFRRLSLEEIGPT 115 (169)
T ss_pred cCCcHHHHHHHhhhhcCCCc
Confidence 245 999999999998 543
No 189
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.61 E-value=15 Score=36.50 Aligned_cols=33 Identities=9% Similarity=0.063 Sum_probs=27.3
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEecc
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGL 73 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~ 73 (635)
+.|.++|||| -++|| ++.+.|.+ +|++|..+=.
T Consensus 6 ~~~~vlVtG~-sg~iG~~l~~~L~~-----~G~~Vi~~~r 39 (239)
T PRK07666 6 QGKNALITGA-GRGIGRAVAIALAK-----EGVNVGLLAR 39 (239)
T ss_pred CCCEEEEEcC-CchHHHHHHHHHHH-----CCCEEEEEeC
Confidence 3588999998 68999 89998888 8999877643
No 190
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.19 E-value=35 Score=36.53 Aligned_cols=36 Identities=36% Similarity=0.385 Sum_probs=29.6
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEehhH
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 435 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGICLGm 435 (635)
.++|.+++-||=|+ ++.+++.+...++|+|||=+|.
T Consensus 62 ~~~d~vi~lGGDGT-----~L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 62 QQADLAIVVGGDGN-----MLGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred CCCCEEEEECCcHH-----HHHHHHHhcCCCCeEEEEECCC
Confidence 46899999998553 6777887777789999999987
No 191
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=55.15 E-value=51 Score=29.02 Aligned_cols=87 Identities=17% Similarity=0.064 Sum_probs=48.7
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCC-CCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcc
Q 006689 333 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACD-LEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 411 (635)
Q Consensus 333 ~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~-le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~ 411 (635)
+|++||.- .|....+.+.++..|+... |..... .++.. ......+.++|.||++=++=+-.
T Consensus 1 ~vliVGG~---~~~~~~~~~~~~~~G~~~~------~hg~~~~~~~~~--------~~l~~~i~~aD~VIv~t~~vsH~- 62 (97)
T PF10087_consen 1 SVLIVGGR---EDRERRYKRILEKYGGKLI------HHGRDGGDEKKA--------SRLPSKIKKADLVIVFTDYVSHN- 62 (97)
T ss_pred CEEEEcCC---cccHHHHHHHHHHcCCEEE------EEecCCCCccch--------hHHHHhcCCCCEEEEEeCCcChH-
Confidence 47889832 2344555667777877643 341111 11100 01346788999999988654422
Q ss_pred hhHHHHHHHHHHcCCCEEEEe-hhHHHH
Q 006689 412 QGKILAAKYAREHRIPYLGIC-LGMQVA 438 (635)
Q Consensus 412 eg~i~air~are~~iP~LGIC-LGmQll 438 (635)
-+..+-+.|.+.++|+.=.= .|..-+
T Consensus 63 -~~~~vk~~akk~~ip~~~~~~~~~~~l 89 (97)
T PF10087_consen 63 -AMWKVKKAAKKYGIPIIYSRSRGVSSL 89 (97)
T ss_pred -HHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 24455567788899976332 344433
No 192
>PRK08267 short chain dehydrogenase; Provisional
Probab=55.14 E-value=13 Score=37.43 Aligned_cols=30 Identities=10% Similarity=0.212 Sum_probs=26.5
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
||-++||||- ++|| ++.+.|-. +|++|..+
T Consensus 1 mk~vlItGas-g~iG~~la~~l~~-----~G~~V~~~ 31 (260)
T PRK08267 1 MKSIFITGAA-SGIGRATALLFAA-----EGWRVGAY 31 (260)
T ss_pred CcEEEEeCCC-chHHHHHHHHHHH-----CCCeEEEE
Confidence 5789999987 8999 99998888 89999876
No 193
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=54.93 E-value=44 Score=31.83 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=18.9
Q ss_pred hHHHHHHhcCcCCCCceeEEeccCCcc
Q 006689 51 FFSLFLVQNCQYHPNTHFNLFGLDPYL 77 (635)
Q Consensus 51 s~g~ll~~~~~~~~g~~v~~~K~DpYl 77 (635)
.++..|.. +|.+|..+..||..
T Consensus 18 ~l~~~~~~-----~g~~v~ii~~D~~~ 39 (148)
T cd03114 18 ALITALRA-----RGKRVAVLAIDPSS 39 (148)
T ss_pred HHHHHHHH-----CCCEEEEEEeCCCC
Confidence 77888888 99999999999843
No 194
>PRK07102 short chain dehydrogenase; Provisional
Probab=54.61 E-value=13 Score=37.06 Aligned_cols=33 Identities=9% Similarity=0.052 Sum_probs=27.0
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccC
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLD 74 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~D 74 (635)
||-|+||||- ++|| ++.+.|-+ +|++|..+=.+
T Consensus 1 ~~~vlItGas-~giG~~~a~~l~~-----~G~~Vi~~~r~ 34 (243)
T PRK07102 1 MKKILIIGAT-SDIARACARRYAA-----AGARLYLAARD 34 (243)
T ss_pred CcEEEEEcCC-cHHHHHHHHHHHh-----cCCEEEEEeCC
Confidence 5679999986 8999 88888888 89998876444
No 195
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=54.43 E-value=47 Score=33.31 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=25.6
Q ss_pred CeEEEEccccccchh------hHHHHHHhcCcCCCCceeEEeccCCc
Q 006689 36 LQYMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFGLDPY 76 (635)
Q Consensus 36 ~k~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K~DpY 76 (635)
||.|-|++ -=.|.| -||..|.. +|+||-.|-.||.
T Consensus 1 m~iI~v~s-~KGGvGKTt~a~nla~~la~-----~g~~VlliD~D~q 41 (246)
T TIGR03371 1 MKVIAIVG-VKGGVGKTTLTANLASALKL-----LGEPVLAIDLDPQ 41 (246)
T ss_pred CcEEEEEe-CCCCccHHHHHHHHHHHHHh-----CCCcEEEEeCCCc
Confidence 45555543 234556 77888888 9999999999996
No 196
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=54.37 E-value=15 Score=38.80 Aligned_cols=32 Identities=9% Similarity=0.039 Sum_probs=16.4
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+++|+++|||. -|||| .+++.|-. +|++|..+
T Consensus 4 ~~~~~~lITGA-SsGIG~~~A~~lA~-----~g~~liLv 36 (265)
T COG0300 4 MKGKTALITGA-SSGIGAELAKQLAR-----RGYNLILV 36 (265)
T ss_pred CCCcEEEEECC-CchHHHHHHHHHHH-----CCCEEEEE
Confidence 34455555543 35555 55555555 55555443
No 197
>PRK06182 short chain dehydrogenase; Validated
Probab=54.26 E-value=15 Score=37.43 Aligned_cols=33 Identities=6% Similarity=-0.109 Sum_probs=27.5
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEec
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFG 72 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K 72 (635)
|+.|.|+|||| -|+|| .+.+.|.. +|++|..+-
T Consensus 1 ~~~k~vlItGa-sggiG~~la~~l~~-----~G~~V~~~~ 34 (273)
T PRK06182 1 MQKKVALVTGA-SSGIGKATARRLAA-----QGYTVYGAA 34 (273)
T ss_pred CCCCEEEEECC-CChHHHHHHHHHHH-----CCCEEEEEe
Confidence 34688999997 58999 99999988 999998653
No 198
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.07 E-value=15 Score=35.96 Aligned_cols=31 Identities=10% Similarity=0.050 Sum_probs=26.0
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
+++|.|+|||| -++|| +|...|-+ +|++|..
T Consensus 4 ~~~~~vlItGa-sg~iG~~l~~~l~~-----~g~~v~~ 35 (249)
T PRK12825 4 LMGRVALVTGA-ARGLGRAIALRLAR-----AGADVVV 35 (249)
T ss_pred CCCCEEEEeCC-CchHHHHHHHHHHH-----CCCeEEE
Confidence 45688999998 78899 89998888 8998755
No 199
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.52 E-value=26 Score=37.11 Aligned_cols=87 Identities=18% Similarity=0.213 Sum_probs=49.1
Q ss_pred cEEEEEeccCCCc--chHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHh-ccCCCEEEECCCCCC
Q 006689 332 VRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL-LKGADGILVPGGFGN 408 (635)
Q Consensus 332 v~IalVGkY~~l~--DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~-L~~~DGIllPGGfG~ 408 (635)
+||+++.+.++-. .....+.+.|+..++++.+.- ..++...... . + ...+. ..++|.|++-||=|+
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~----~~~~~~~~~~---~---~-~~~~~~~~~~d~vi~iGGDGT 69 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDS----ETYEHLPEFS---E---E-DVLPLEEMDVDFIIAIGGDGT 69 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEec----chhhhcCccc---c---c-ccccccccCCCEEEEEeCcHH
Confidence 5899997665422 123455667877777654420 0111110000 0 0 00011 136899999998553
Q ss_pred CcchhHHHHHHHHHHcCCCEEEEehhH
Q 006689 409 RGVQGKILAAKYAREHRIPYLGICLGM 435 (635)
Q Consensus 409 rg~eg~i~air~are~~iP~LGICLGm 435 (635)
++.+++ ....++|++||=.|.
T Consensus 70 -----lL~a~~-~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 70 -----ILRIEH-KTKKDIPILGINMGT 90 (277)
T ss_pred -----HHHHHH-hcCCCCeEEEEeCCC
Confidence 566777 666789999999886
No 200
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.39 E-value=36 Score=39.67 Aligned_cols=104 Identities=17% Similarity=0.225 Sum_probs=56.9
Q ss_pred HHHHHHHhcC--CCCccEEEEEeccCCCc--chHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHh
Q 006689 318 WTSRAEICDG--LHEPVRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL 393 (635)
Q Consensus 318 W~~lv~~~~~--~~~~v~IalVGkY~~l~--DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~ 393 (635)
|+.+.+.+.. ..+..||+|+.+..+-. +....+.+.|+..++.+.+. ...+..+.... +.... ....
T Consensus 275 ~~~l~~~l~~~w~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~----~~~~~~~~~~~----~~~~~-~~~~ 345 (569)
T PRK14076 275 HKKLVGIFGNKWRIKPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELE----SFLYNKLKNRL----NEECN-LIDD 345 (569)
T ss_pred HHHHHHhhhhhcccCCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEe----chhhhhhcccc----ccccc-cccc
Confidence 4445554433 24457899997654321 12234556677777654331 00111111000 00000 0012
Q ss_pred ccCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEehhH
Q 006689 394 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 435 (635)
Q Consensus 394 L~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGICLGm 435 (635)
+.++|.||+-||=|+ ++.+++.+...++|+|||=+|.
T Consensus 346 ~~~~dlvi~lGGDGT-----~L~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 346 IEEISHIISIGGDGT-----VLRASKLVNGEEIPIICINMGT 382 (569)
T ss_pred ccCCCEEEEECCcHH-----HHHHHHHhcCCCCCEEEEcCCC
Confidence 346899999998553 6788888777899999998885
No 201
>PRK06180 short chain dehydrogenase; Provisional
Probab=53.08 E-value=15 Score=37.57 Aligned_cols=34 Identities=0% Similarity=-0.142 Sum_probs=27.9
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccC
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLD 74 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~D 74 (635)
.+|.|+|||| -|+|| .+.+.|.+ +|++|..+--+
T Consensus 3 ~~~~vlVtGa-sggiG~~la~~l~~-----~G~~V~~~~r~ 37 (277)
T PRK06180 3 SMKTWLITGV-SSGFGRALAQAALA-----AGHRVVGTVRS 37 (277)
T ss_pred CCCEEEEecC-CChHHHHHHHHHHh-----CcCEEEEEeCC
Confidence 3688999999 57999 88998988 89999886443
No 202
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=52.97 E-value=35 Score=34.21 Aligned_cols=21 Identities=10% Similarity=0.006 Sum_probs=19.2
Q ss_pred hHHHHHHhcCcCCCCceeEEeccCCc
Q 006689 51 FFSLFLVQNCQYHPNTHFNLFGLDPY 76 (635)
Q Consensus 51 s~g~ll~~~~~~~~g~~v~~~K~DpY 76 (635)
.|+..|.. +|++|-.+.+||.
T Consensus 20 ~LA~~la~-----~g~~VlliD~D~~ 40 (251)
T TIGR01969 20 NLGVALAK-----LGKKVLALDADIT 40 (251)
T ss_pred HHHHHHHH-----CCCeEEEEeCCCC
Confidence 78888999 9999999999994
No 203
>PRK09072 short chain dehydrogenase; Provisional
Probab=52.90 E-value=16 Score=36.91 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=28.3
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccC
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLD 74 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~D 74 (635)
+.|.|+||||. |+|| ++.+.|.. +|++|..+-.+
T Consensus 4 ~~~~vlItG~s-~~iG~~ia~~l~~-----~G~~V~~~~r~ 38 (263)
T PRK09072 4 KDKRVLLTGAS-GGIGQALAEALAA-----AGARLLLVGRN 38 (263)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHH-----CCCEEEEEECC
Confidence 34789999887 8999 99999999 99999876443
No 204
>PRK06914 short chain dehydrogenase; Provisional
Probab=52.34 E-value=16 Score=37.13 Aligned_cols=32 Identities=9% Similarity=-0.001 Sum_probs=26.5
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
|+.|.++|||| -|+|| ++.+.|.. +|++|..+
T Consensus 1 ~~~k~~lItGa-sg~iG~~la~~l~~-----~G~~V~~~ 33 (280)
T PRK06914 1 MNKKIAIVTGA-SSGFGLLTTLELAK-----KGYLVIAT 33 (280)
T ss_pred CCCCEEEEECC-CchHHHHHHHHHHh-----CCCEEEEE
Confidence 45689999997 47889 89998888 89988765
No 205
>PRK07814 short chain dehydrogenase; Provisional
Probab=52.27 E-value=18 Score=36.75 Aligned_cols=36 Identities=8% Similarity=0.010 Sum_probs=29.4
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccCC
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLDP 75 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~Dp 75 (635)
++.|.++|||| -++|| ++.+.|.+ +|++|...-.+|
T Consensus 8 ~~~~~vlItGa-sggIG~~~a~~l~~-----~G~~Vi~~~r~~ 44 (263)
T PRK07814 8 LDDQVAVVTGA-GRGLGAAIALAFAE-----AGADVLIAARTE 44 (263)
T ss_pred CCCCEEEEECC-CChHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence 45688999998 68899 99999999 999987765443
No 206
>PLN00198 anthocyanidin reductase; Provisional
Probab=52.08 E-value=16 Score=38.52 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=29.8
Q ss_pred cCCCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccCC
Q 006689 32 APLNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLDP 75 (635)
Q Consensus 32 ~~~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~Dp 75 (635)
.|+++|.|+||||- +.|| .|...|.. +|++|..+-.|+
T Consensus 5 ~~~~~~~vlItG~~-GfIG~~l~~~L~~-----~g~~V~~~~r~~ 43 (338)
T PLN00198 5 TPTGKKTACVIGGT-GFLASLLIKLLLQ-----KGYAVNTTVRDP 43 (338)
T ss_pred cCCCCCeEEEECCc-hHHHHHHHHHHHH-----CCCEEEEEECCC
Confidence 46667889999987 7788 78888888 899997665553
No 207
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=51.90 E-value=20 Score=36.27 Aligned_cols=35 Identities=9% Similarity=0.003 Sum_probs=28.4
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccC
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLD 74 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~D 74 (635)
+.-|.++||||- ++|| ++.+.|-. +|++|...-.+
T Consensus 7 l~~k~vlItG~s-~gIG~~la~~l~~-----~G~~v~~~~~~ 42 (266)
T PRK06171 7 LQGKIIIVTGGS-SGIGLAIVKELLA-----NGANVVNADIH 42 (266)
T ss_pred CCCCEEEEeCCC-ChHHHHHHHHHHH-----CCCEEEEEeCC
Confidence 345889999975 8999 89999988 99999876443
No 208
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=51.85 E-value=16 Score=36.28 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=25.9
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
+.|.++|||| -|+|| ++.+.|-+ +|++|..
T Consensus 5 ~~~~~lItG~-s~~iG~~la~~l~~-----~g~~v~~ 35 (247)
T PRK12935 5 NGKVAIVTGG-AKGIGKAITVALAQ-----EGAKVVI 35 (247)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHH-----cCCEEEE
Confidence 4589999998 59999 99998888 8998865
No 209
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.79 E-value=39 Score=35.36 Aligned_cols=72 Identities=19% Similarity=0.200 Sum_probs=44.6
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcc
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 411 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~ 411 (635)
++++++++ ......+..+.+.|...|..+. |.+... ....++|.|++-||=|+
T Consensus 1 m~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~------~~~~~~-----------------~~~~~~d~vi~iGGDGT--- 53 (256)
T PRK14075 1 MKLGIFYR-EEKEKEAKFLKEKISKEHEVVE------FCEASA-----------------SGKVTADLIIVVGGDGT--- 53 (256)
T ss_pred CEEEEEeC-ccHHHHHHHHHHHHHHcCCeeE------eecccc-----------------cccCCCCEEEEECCcHH---
Confidence 46777743 3333455666677777775432 332111 11347899999998553
Q ss_pred hhHHHHHHHHHHcCCCEEEEehhH
Q 006689 412 QGKILAAKYAREHRIPYLGICLGM 435 (635)
Q Consensus 412 eg~i~air~are~~iP~LGICLGm 435 (635)
++.+++.+ ++|++||=.|.
T Consensus 54 --~L~a~~~~---~~Pilgin~G~ 72 (256)
T PRK14075 54 --VLKAAKKV---GTPLVGFKAGR 72 (256)
T ss_pred --HHHHHHHc---CCCEEEEeCCC
Confidence 45666655 89999999886
No 210
>PRK08278 short chain dehydrogenase; Provisional
Probab=51.18 E-value=18 Score=37.13 Aligned_cols=31 Identities=10% Similarity=0.080 Sum_probs=26.5
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
..|.++|||| -|+|| +|.+.|-. +|++|...
T Consensus 5 ~~k~vlItGa-s~gIG~~ia~~l~~-----~G~~V~~~ 36 (273)
T PRK08278 5 SGKTLFITGA-SRGIGLAIALRAAR-----DGANIVIA 36 (273)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH-----CCCEEEEE
Confidence 3488999999 68999 99999988 89988764
No 211
>PRK05693 short chain dehydrogenase; Provisional
Probab=50.69 E-value=17 Score=37.10 Aligned_cols=31 Identities=3% Similarity=-0.081 Sum_probs=26.3
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEec
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFG 72 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K 72 (635)
||-++|||| -|+|| ++.+.|.. +|++|...-
T Consensus 1 mk~vlItGa-sggiG~~la~~l~~-----~G~~V~~~~ 32 (274)
T PRK05693 1 MPVVLITGC-SSGIGRALADAFKA-----AGYEVWATA 32 (274)
T ss_pred CCEEEEecC-CChHHHHHHHHHHH-----CCCEEEEEe
Confidence 578999998 58999 89999988 899988753
No 212
>PRK07035 short chain dehydrogenase; Provisional
Probab=50.67 E-value=19 Score=36.05 Aligned_cols=31 Identities=13% Similarity=0.071 Sum_probs=26.7
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+-|-++||||- |+|| ++.+.|.. +|++|..+
T Consensus 7 ~~k~vlItGas-~gIG~~l~~~l~~-----~G~~Vi~~ 38 (252)
T PRK07035 7 TGKIALVTGAS-RGIGEAIAKLLAQ-----QGAHVIVS 38 (252)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHH-----CCCEEEEE
Confidence 34789999886 9999 99999999 89988775
No 213
>PRK05876 short chain dehydrogenase; Provisional
Probab=50.44 E-value=18 Score=37.35 Aligned_cols=32 Identities=6% Similarity=-0.126 Sum_probs=27.2
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
++.|.++|||| -|||| ++...|-. +|++|...
T Consensus 4 ~~~k~vlVTGa-s~gIG~ala~~La~-----~G~~Vv~~ 36 (275)
T PRK05876 4 FPGRGAVITGG-ASGIGLATGTEFAR-----RGARVVLG 36 (275)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHH-----CCCEEEEE
Confidence 34688999999 49999 99999999 99998763
No 214
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=50.39 E-value=41 Score=36.52 Aligned_cols=104 Identities=21% Similarity=0.227 Sum_probs=62.9
Q ss_pred cccCCccchhhhhhcCCCcccEEEEeeCCCCChhhhccccccCCCCCCCeeeeCCCCCcchhhHHHHHhhhHHHHHHhcC
Q 006689 226 QKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLN 305 (635)
Q Consensus 226 ~KtKptQ~svk~Lrs~Gi~pd~iv~R~~~~l~~~~r~Kislfc~v~~~~Vi~i~dvdt~y~vpl~LreqG~~~~i~~~l~ 305 (635)
.|=---.-.++.|.+.| +|+||+|....- .-..+|-+..+. .||+.-|=..- |=+ |.+.+.
T Consensus 86 ~KGEtL~DT~~tl~ayg--~D~iViRH~~eg---aa~~~a~~~~~~--pvINaGDG~~q-HPT-----Q~LLDl------ 146 (316)
T COG0540 86 KKGETLADTIRTLSAYG--VDAIVIRHPEEG---AARLLAEFSGVN--PVINAGDGSHQ-HPT-----QALLDL------ 146 (316)
T ss_pred cccccHHHHHHHHHhhC--CCEEEEeCcccc---HHHHHHHhcCCC--ceEECCCCCCC-Ccc-----HHHHHH------
Confidence 44445567889999988 999999987643 334455554553 37777665543 222 222211
Q ss_pred CCCCCCccchHHHHHHHHHhcCCCCccEEEEEeccCCCcchHHHHHHHHHHcccccee
Q 006689 306 LQGTTKEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRK 363 (635)
Q Consensus 306 l~~~~~~~~l~~W~~lv~~~~~~~~~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~v 363 (635)
|+ +-+.. ..-+..+||++||--... .-+|.+++|...|+++..
T Consensus 147 ------------~T-I~~~~-G~~~gl~iaivGDlkhsR-va~S~~~~L~~~ga~v~l 189 (316)
T COG0540 147 ------------YT-IREEF-GRLDGLKIAIVGDLKHSR-VAHSNIQALKRFGAEVYL 189 (316)
T ss_pred ------------HH-HHHHh-CCcCCcEEEEEccccchH-HHHHHHHHHHHcCCEEEE
Confidence 11 00111 113568999999754322 568899999999977654
No 215
>PRK09135 pteridine reductase; Provisional
Probab=50.25 E-value=20 Score=35.41 Aligned_cols=31 Identities=6% Similarity=0.012 Sum_probs=25.5
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+.|.|+|||| -++|| ++.+.|-. +|++|..+
T Consensus 5 ~~~~vlItGa-~g~iG~~l~~~l~~-----~g~~v~~~ 36 (249)
T PRK09135 5 SAKVALITGG-ARRIGAAIARTLHA-----AGYRVAIH 36 (249)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHH-----CCCEEEEE
Confidence 3588999998 59999 89998888 88887653
No 216
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=49.96 E-value=18 Score=35.68 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=24.8
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
||.++|||| .++|| ++.+.|-+ +|++|..
T Consensus 1 ~~~~lItGa-~g~iG~~l~~~l~~-----~g~~v~~ 30 (247)
T PRK09730 1 MAIALVTGG-SRGIGRATALLLAQ-----EGYTVAV 30 (247)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHH-----CCCEEEE
Confidence 578999999 58999 88988888 8998865
No 217
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=49.84 E-value=19 Score=35.75 Aligned_cols=29 Identities=3% Similarity=-0.002 Sum_probs=24.5
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
+|-|+||||- |+|| .+.+.|-. +|++|..
T Consensus 2 ~k~ilItGas-~giG~~la~~l~~-----~g~~v~~ 31 (248)
T PRK06947 2 RKVVLITGAS-RGIGRATAVLAAA-----RGWSVGI 31 (248)
T ss_pred CcEEEEeCCC-CcHHHHHHHHHHH-----CCCEEEE
Confidence 6889999985 8999 89999988 8887754
No 218
>PRK12829 short chain dehydrogenase; Provisional
Probab=49.74 E-value=21 Score=35.76 Aligned_cols=35 Identities=6% Similarity=0.077 Sum_probs=28.7
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccC
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLD 74 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~D 74 (635)
++.|.++||||- ++|| ++...|.+ +|++|..+-.|
T Consensus 9 ~~~~~vlItGa~-g~iG~~~a~~L~~-----~g~~V~~~~r~ 44 (264)
T PRK12829 9 LDGLRVLVTGGA-SGIGRAIAEAFAE-----AGARVHVCDVS 44 (264)
T ss_pred cCCCEEEEeCCC-CcHHHHHHHHHHH-----CCCEEEEEeCC
Confidence 446889999996 9999 89999989 89998876533
No 219
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=49.47 E-value=59 Score=31.13 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=22.5
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEE
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 431 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGI 431 (635)
.++|||++++.... ...+.+.+.+.++|++.+
T Consensus 57 ~~~d~ii~~~~~~~-----~~~~~~~~~~~~ip~v~~ 88 (269)
T cd01391 57 QGVDGIIGPPSSSS-----ALAVVELAAAAGIPVVSL 88 (269)
T ss_pred cCCCEEEecCCCHH-----HHHHHHHHHHcCCcEEEe
Confidence 37999999874321 122667778889999876
No 220
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.40 E-value=19 Score=35.87 Aligned_cols=30 Identities=7% Similarity=-0.094 Sum_probs=25.2
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
.|.|+|||| -++|| ++.+.|.+ +|++|..+
T Consensus 2 ~k~vlItG~-sg~iG~~la~~L~~-----~g~~vi~~ 32 (256)
T PRK12745 2 RPVALVTGG-RRGIGLGIARALAA-----AGFDLAIN 32 (256)
T ss_pred CcEEEEeCC-CchHHHHHHHHHHH-----CCCEEEEE
Confidence 478999998 78899 89999999 88877653
No 221
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=49.19 E-value=21 Score=36.18 Aligned_cols=31 Identities=3% Similarity=0.014 Sum_probs=26.4
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+.|.++|||| -+||| ++.+.|.. +|++|..+
T Consensus 4 ~~k~vlItGa-s~gIG~~ia~~l~~-----~G~~V~~~ 35 (262)
T TIGR03325 4 KGEVVLVTGG-ASGLGRAIVDRFVA-----EGARVAVL 35 (262)
T ss_pred CCcEEEEECC-CChHHHHHHHHHHH-----CCCEEEEE
Confidence 4589999998 48999 89999988 89998764
No 222
>PRK05993 short chain dehydrogenase; Provisional
Probab=48.99 E-value=19 Score=37.04 Aligned_cols=33 Identities=6% Similarity=-0.078 Sum_probs=27.8
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccC
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLD 74 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~D 74 (635)
+|.++|||| -|+|| ++.+.|.. +|++|...--+
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~-----~G~~Vi~~~r~ 37 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQS-----DGWRVFATCRK 37 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHH-----CCCEEEEEECC
Confidence 578999998 69999 99999999 99999886433
No 223
>PRK12828 short chain dehydrogenase; Provisional
Probab=48.94 E-value=23 Score=34.59 Aligned_cols=34 Identities=9% Similarity=0.047 Sum_probs=28.8
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccCC
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLDP 75 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~Dp 75 (635)
.|.|+||||- ++|| ++.+.|.+ +|++|..+--||
T Consensus 7 ~k~vlItGat-g~iG~~la~~l~~-----~G~~v~~~~r~~ 41 (239)
T PRK12828 7 GKVVAITGGF-GGLGRATAAWLAA-----RGARVALIGRGA 41 (239)
T ss_pred CCEEEEECCC-CcHhHHHHHHHHH-----CCCeEEEEeCCh
Confidence 4789999987 8999 99999988 899998876654
No 224
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=48.94 E-value=54 Score=34.43 Aligned_cols=50 Identities=26% Similarity=0.402 Sum_probs=31.7
Q ss_pred cCCCEEEECCCCCCCc--chhHHHHHHHHHHcCCCEEEE--ehhHHHHHHHHhccccc
Q 006689 395 KGADGILVPGGFGNRG--VQGKILAAKYAREHRIPYLGI--CLGMQVAVIEFARSVLN 448 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg--~eg~i~air~are~~iP~LGI--CLGmQllaie~GrnV~g 448 (635)
++.|-|...-|||--. ....+-+=....-.++|+.|+ |.|| +|.||.+.|
T Consensus 69 ~diD~icyTKGPGmgaPL~~vaivaRtlsllw~kPlv~VNHCigH----IEMGR~iTg 122 (336)
T KOG2708|consen 69 DDIDCICYTKGPGMGAPLSVVAIVARTLSLLWNKPLVGVNHCIGH----IEMGREITG 122 (336)
T ss_pred hhCCEEEEcCCCCCCCchhhHHHHHHHHHHHhCCCcccchhhhhh----hhhcceecc
Confidence 4679999998887643 222222222233368999998 7776 677787654
No 225
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=48.94 E-value=21 Score=35.46 Aligned_cols=32 Identities=6% Similarity=-0.082 Sum_probs=26.7
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
++.|.|+|||| -++|| ++.+.|-+ +|++|.+.
T Consensus 3 ~~~k~vlItGa-s~gIG~~ia~~l~~-----~G~~vi~~ 35 (248)
T TIGR01832 3 LEGKVALVTGA-NTGLGQGIAVGLAE-----AGADIVGA 35 (248)
T ss_pred CCCCEEEEECC-CchHHHHHHHHHHH-----CCCEEEEE
Confidence 44688999999 48999 99999999 89988664
No 226
>PRK06101 short chain dehydrogenase; Provisional
Probab=48.62 E-value=18 Score=36.12 Aligned_cols=32 Identities=9% Similarity=0.048 Sum_probs=26.9
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEecc
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGL 73 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~ 73 (635)
||-++||||- +||| .+.+.|.. +|++|...=.
T Consensus 1 ~~~vlItGas-~giG~~la~~L~~-----~G~~V~~~~r 33 (240)
T PRK06101 1 MTAVLITGAT-SGIGKQLALDYAK-----QGWQVIACGR 33 (240)
T ss_pred CcEEEEEcCC-cHHHHHHHHHHHh-----CCCEEEEEEC
Confidence 4678999994 9999 89999999 9999987633
No 227
>PRK07577 short chain dehydrogenase; Provisional
Probab=48.44 E-value=24 Score=34.66 Aligned_cols=35 Identities=11% Similarity=0.002 Sum_probs=28.4
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccCC
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLDP 75 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~Dp 75 (635)
..|.|+||||- ++|| .+.+.|.+ +|++|..+--++
T Consensus 2 ~~k~vlItG~s-~~iG~~ia~~l~~-----~G~~v~~~~r~~ 37 (234)
T PRK07577 2 SSRTVLVTGAT-KGIGLALSLRLAN-----LGHQVIGIARSA 37 (234)
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHH-----CCCEEEEEeCCc
Confidence 34789999875 7999 89999999 999998875543
No 228
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=48.36 E-value=21 Score=36.03 Aligned_cols=32 Identities=9% Similarity=-0.028 Sum_probs=27.0
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+.-|.++|||| -|||| ++.+.|-. +|++|...
T Consensus 6 l~~k~~lItGa-s~gIG~aia~~l~~-----~G~~vv~~ 38 (251)
T PRK12481 6 LNGKVAIITGC-NTGLGQGMAIGLAK-----AGADIVGV 38 (251)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHH-----CCCEEEEe
Confidence 34589999998 58999 99999989 99998763
No 229
>PRK08017 oxidoreductase; Provisional
Probab=48.05 E-value=21 Score=35.63 Aligned_cols=32 Identities=9% Similarity=-0.125 Sum_probs=26.9
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEecc
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGL 73 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~ 73 (635)
+|-|+|||| -+++| ++.+.|.. +|++|..+-.
T Consensus 2 ~k~vlVtGa-sg~IG~~la~~l~~-----~g~~v~~~~r 34 (256)
T PRK08017 2 QKSVLITGC-SSGIGLEAALELKR-----RGYRVLAACR 34 (256)
T ss_pred CCEEEEECC-CChHHHHHHHHHHH-----CCCEEEEEeC
Confidence 467999999 68999 99999999 8999887543
No 230
>PRK12827 short chain dehydrogenase; Provisional
Probab=47.56 E-value=22 Score=35.03 Aligned_cols=31 Identities=3% Similarity=0.063 Sum_probs=25.7
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEec
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFG 72 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K 72 (635)
.|-|+||||- |+|| ++.+.|-+ +|++|..+-
T Consensus 6 ~~~ilItGas-g~iG~~la~~l~~-----~g~~v~~~~ 37 (249)
T PRK12827 6 SRRVLITGGS-GGLGRAIAVRLAA-----DGADVIVLD 37 (249)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHH-----CCCeEEEEc
Confidence 4678999976 9999 89999999 899887654
No 231
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=47.31 E-value=23 Score=34.94 Aligned_cols=35 Identities=6% Similarity=-0.022 Sum_probs=27.5
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccCC
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLDP 75 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~Dp 75 (635)
+.|.|+|||| -++|| ++.+.|-. +|++|..+=-+|
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~-----~g~~V~~~~r~~ 40 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAA-----DGAEVIVVDICG 40 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence 3578999998 58999 88888888 899887764443
No 232
>PRK07825 short chain dehydrogenase; Provisional
Probab=47.24 E-value=22 Score=36.13 Aligned_cols=33 Identities=9% Similarity=-0.073 Sum_probs=27.0
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEec
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFG 72 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K 72 (635)
++.|-|+||||- |||| ++.+.|-. +|++|...-
T Consensus 3 ~~~~~ilVtGas-ggiG~~la~~l~~-----~G~~v~~~~ 36 (273)
T PRK07825 3 LRGKVVAITGGA-RGIGLATARALAA-----LGARVAIGD 36 (273)
T ss_pred CCCCEEEEeCCC-chHHHHHHHHHHH-----CCCEEEEEE
Confidence 345789999994 8999 89998888 899987753
No 233
>PRK08339 short chain dehydrogenase; Provisional
Probab=47.05 E-value=23 Score=36.19 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=27.3
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
++.|.++||||- |||| ++.+.|-+ +|++|.+.
T Consensus 6 l~~k~~lItGas-~gIG~aia~~l~~-----~G~~V~~~ 38 (263)
T PRK08339 6 LSGKLAFTTASS-KGIGFGVARVLAR-----AGADVILL 38 (263)
T ss_pred CCCCEEEEeCCC-CcHHHHHHHHHHH-----CCCEEEEE
Confidence 346899999986 8999 99999999 99998764
No 234
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=46.75 E-value=23 Score=35.55 Aligned_cols=29 Identities=3% Similarity=0.002 Sum_probs=25.4
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
-|.++||||- |+|| ++.+.|-+ +|++|..
T Consensus 7 ~k~~lItGas-~gIG~~~a~~l~~-----~G~~v~~ 36 (255)
T PRK06463 7 GKVALITGGT-RGIGRAIAEAFLR-----EGAKVAV 36 (255)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHH-----CCCEEEE
Confidence 4889999994 9999 99999988 8998865
No 235
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=46.35 E-value=25 Score=34.66 Aligned_cols=32 Identities=9% Similarity=0.021 Sum_probs=26.6
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+++|-|+|||| -++|| ++.+.|.+ +|++|..+
T Consensus 3 ~~~~~ilI~Ga-sg~iG~~la~~l~~-----~g~~v~~~ 35 (247)
T PRK05565 3 LMGKVAIVTGA-SGGIGRAIAELLAK-----EGAKVVIA 35 (247)
T ss_pred CCCCEEEEeCC-CcHHHHHHHHHHHH-----CCCEEEEE
Confidence 34688999998 48999 88888888 89998875
No 236
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=46.21 E-value=23 Score=36.73 Aligned_cols=45 Identities=31% Similarity=0.585 Sum_probs=35.3
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEehhHHHHHHHHhccc
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGMQVAVIEFARSV 446 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGICLGmQllaie~GrnV 446 (635)
.++||++|+= |+||+. .++|.. ..+|+.|||----..+...||++
T Consensus 68 ~GvdaiiIaC-f~DPgl----~~~Re~--~~~PviGi~eAsv~~A~~vgrrf 112 (230)
T COG4126 68 QGVDAIIIAC-FSDPGL----AAARER--AAIPVIGICEASVLAALFVGRRF 112 (230)
T ss_pred cCCcEEEEEe-cCChHH----HHHHHH--hCCCceehhHHHHHHHHHhcceE
Confidence 4799999998 888765 344443 37999999998888888888875
No 237
>PRK07454 short chain dehydrogenase; Provisional
Probab=46.12 E-value=22 Score=35.21 Aligned_cols=33 Identities=9% Similarity=0.081 Sum_probs=27.4
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEecc
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGL 73 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~ 73 (635)
.+|-++|||| -++|| ++.+.|-+ +|++|...=.
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~-----~G~~V~~~~r 38 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAK-----AGWDLALVAR 38 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHH-----CCCEEEEEeC
Confidence 4688999998 68999 88988888 8998887543
No 238
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=45.98 E-value=94 Score=31.21 Aligned_cols=34 Identities=26% Similarity=0.148 Sum_probs=23.3
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEe
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 432 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGIC 432 (635)
.++|||++.+... ......++.++++++|+.-+.
T Consensus 56 ~~vdgiii~~~~~----~~~~~~l~~~~~~~ipvV~~~ 89 (271)
T cd06312 56 AKPDGIVVTIPDP----DALDPAIKRAVAAGIPVISFN 89 (271)
T ss_pred hCCCEEEEeCCCh----HHhHHHHHHHHHCCCeEEEeC
Confidence 4899999977321 122345677788899998774
No 239
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=45.96 E-value=26 Score=35.17 Aligned_cols=32 Identities=9% Similarity=-0.031 Sum_probs=27.2
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
++.|.++||||- ++|| ++.+.|.. +|++|...
T Consensus 6 ~~~k~vlVtGas-~gIG~~la~~l~~-----~G~~v~~~ 38 (260)
T PRK12823 6 FAGKVVVVTGAA-QGIGRGVALRAAA-----EGARVVLV 38 (260)
T ss_pred cCCCEEEEeCCC-chHHHHHHHHHHH-----CCCEEEEE
Confidence 446889999975 8999 89999999 99998774
No 240
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=45.77 E-value=25 Score=35.44 Aligned_cols=32 Identities=9% Similarity=-0.080 Sum_probs=26.8
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
++.|.++|||| -++|| ++++.|-. +|++|..+
T Consensus 8 l~~k~~lItG~-~~gIG~a~a~~l~~-----~G~~vv~~ 40 (253)
T PRK08993 8 LEGKVAVVTGC-DTGLGQGMALGLAE-----AGCDIVGI 40 (253)
T ss_pred CCCCEEEEECC-CchHHHHHHHHHHH-----CCCEEEEe
Confidence 34589999998 58999 99999999 89988753
No 241
>PHA02518 ParA-like protein; Provisional
Probab=45.70 E-value=50 Score=32.11 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=19.8
Q ss_pred hHHHHHHhcCcCCCCceeEEeccCCcc
Q 006689 51 FFSLFLVQNCQYHPNTHFNLFGLDPYL 77 (635)
Q Consensus 51 s~g~ll~~~~~~~~g~~v~~~K~DpYl 77 (635)
.|+..|.. +|++|.+|-+||.-
T Consensus 20 ~la~~la~-----~g~~vlliD~D~q~ 41 (211)
T PHA02518 20 NLASWLHA-----DGHKVLLVDLDPQG 41 (211)
T ss_pred HHHHHHHh-----CCCeEEEEeCCCCC
Confidence 77888999 99999999999974
No 242
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.53 E-value=53 Score=35.19 Aligned_cols=36 Identities=36% Similarity=0.501 Sum_probs=28.5
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEehhH
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 435 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGICLGm 435 (635)
+.+|-|++-||=|+ .+.+++.+...++|+|||=.|.
T Consensus 61 ~~~d~vi~~GGDGt-----~l~~~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 61 EVCDLVIVVGGDGS-----LLGAARALARHNVPVLGINRGR 96 (295)
T ss_pred cCCCEEEEEeCcHH-----HHHHHHHhcCCCCCEEEEeCCc
Confidence 46899999998543 5677777767799999999885
No 243
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=45.42 E-value=87 Score=30.50 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=22.1
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEE
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 431 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGI 431 (635)
.++|||++.+.... ... ++.+.+.++|+..+
T Consensus 54 ~~~d~iii~~~~~~-----~~~-~~~~~~~~ipvv~~ 84 (264)
T cd06267 54 RRVDGIILAPSRLD-----DEL-LEELAALGIPVVLV 84 (264)
T ss_pred cCcCEEEEecCCcc-----hHH-HHHHHHcCCCEEEe
Confidence 48999999875432 122 77778889998766
No 244
>PRK06128 oxidoreductase; Provisional
Probab=45.40 E-value=31 Score=35.93 Aligned_cols=31 Identities=6% Similarity=-0.018 Sum_probs=26.5
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+.|-++|||| -+||| ++.+.|-. +|++|...
T Consensus 54 ~~k~vlITGa-s~gIG~~~a~~l~~-----~G~~V~i~ 85 (300)
T PRK06128 54 QGRKALITGA-DSGIGRATAIAFAR-----EGADIALN 85 (300)
T ss_pred CCCEEEEecC-CCcHHHHHHHHHHH-----cCCEEEEE
Confidence 3589999998 69999 99999999 89998753
No 245
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=45.21 E-value=25 Score=37.04 Aligned_cols=31 Identities=6% Similarity=0.030 Sum_probs=26.1
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
..|-|+||||- +||| .+.+.|-. +|++|...
T Consensus 5 ~~k~vlVTGas-~gIG~~~a~~L~~-----~G~~V~~~ 36 (322)
T PRK07453 5 AKGTVIITGAS-SGVGLYAAKALAK-----RGWHVIMA 36 (322)
T ss_pred CCCEEEEEcCC-ChHHHHHHHHHHH-----CCCEEEEE
Confidence 46889999985 9999 88998888 89888764
No 246
>PRK09242 tropinone reductase; Provisional
Probab=45.14 E-value=25 Score=35.29 Aligned_cols=31 Identities=6% Similarity=-0.049 Sum_probs=26.3
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+.|.++|||| -|+|| ++.+.|-+ +|++|.++
T Consensus 8 ~~k~~lItGa-~~gIG~~~a~~l~~-----~G~~v~~~ 39 (257)
T PRK09242 8 DGQTALITGA-SKGIGLAIAREFLG-----LGADVLIV 39 (257)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHH-----cCCEEEEE
Confidence 4588999988 68999 99999999 89987765
No 247
>PRK08226 short chain dehydrogenase; Provisional
Probab=45.00 E-value=26 Score=35.23 Aligned_cols=31 Identities=6% Similarity=-0.011 Sum_probs=26.2
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
..|-++||||- |+|| .+...|-+ +|++|..+
T Consensus 5 ~~~~~lItG~s-~giG~~la~~l~~-----~G~~Vv~~ 36 (263)
T PRK08226 5 TGKTALITGAL-QGIGEGIARVFAR-----HGANLILL 36 (263)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHH-----CCCEEEEe
Confidence 35788999995 9999 88988888 89988775
No 248
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=44.90 E-value=45 Score=31.97 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcccCCCCCCCCcEEEEeeCCc--ccccCcchHHHHHHHhhhhcCC--CCEEEEeeeeee
Q 006689 153 DEIQDWIERVAMIPVDGKEGPVDVCVIELGGT--IGDIESMPFIEALGQFSYRVGP--GNFCLIHVSLVP 218 (635)
Q Consensus 153 ~~i~~~i~~~~~~pvd~~~~~~dv~i~EiGGT--vGdies~pf~ea~rq~~~~~g~--~n~~~ihv~~vp 218 (635)
.++.+++..+. ..+||+|+|.+|+- .......-|.|.+++|-..+.. .++-.+=+++.|
T Consensus 54 ~~~~~~l~~~~-------~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~~~~~iiv~~~p~ 116 (191)
T cd01836 54 ADLLRQLAPLP-------ETRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKFPGARVVVTAVPP 116 (191)
T ss_pred HHHHHHHHhcc-------cCCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCC
Confidence 44556666532 56899999999983 1112234577788877776654 344444445433
No 249
>PRK08263 short chain dehydrogenase; Provisional
Probab=44.80 E-value=25 Score=35.87 Aligned_cols=33 Identities=3% Similarity=-0.040 Sum_probs=26.7
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEec
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFG 72 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K 72 (635)
|+.|-|+|||| -|+|| .+...|.. +|++|..+=
T Consensus 1 ~~~k~vlItGa-sg~iG~~~a~~l~~-----~g~~V~~~~ 34 (275)
T PRK08263 1 MMEKVWFITGA-SRGFGRAWTEAALE-----RGDRVVATA 34 (275)
T ss_pred CCCCEEEEeCC-CChHHHHHHHHHHH-----CCCEEEEEE
Confidence 34588999997 69999 88888888 899887643
No 250
>PRK06197 short chain dehydrogenase; Provisional
Probab=44.62 E-value=27 Score=36.45 Aligned_cols=32 Identities=9% Similarity=-0.045 Sum_probs=26.5
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
++.|.|+||||- +||| .+.+.|-. +|++|...
T Consensus 14 ~~~k~vlItGas-~gIG~~~a~~l~~-----~G~~vi~~ 46 (306)
T PRK06197 14 QSGRVAVVTGAN-TGLGYETAAALAA-----KGAHVVLA 46 (306)
T ss_pred CCCCEEEEcCCC-CcHHHHHHHHHHH-----CCCEEEEE
Confidence 346899999995 8999 89998888 89887664
No 251
>PRK09186 flagellin modification protein A; Provisional
Probab=44.07 E-value=28 Score=34.77 Aligned_cols=31 Identities=3% Similarity=-0.078 Sum_probs=26.7
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
..|.++||||- ++|| .+.+.|.. +|++|...
T Consensus 3 ~~k~vlItGas-~giG~~~a~~l~~-----~g~~v~~~ 34 (256)
T PRK09186 3 KGKTILITGAG-GLIGSALVKAILE-----AGGIVIAA 34 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHH-----CCCEEEEE
Confidence 35889999994 8999 99999999 99998776
No 252
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=44.03 E-value=29 Score=34.03 Aligned_cols=35 Identities=9% Similarity=0.065 Sum_probs=28.2
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccCC
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLDP 75 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~Dp 75 (635)
+.|-|+|||| -++|| .+.+.|.+ +|++|..+--+|
T Consensus 4 ~~~~ilItGa-sg~iG~~l~~~l~~-----~g~~v~~~~r~~ 39 (246)
T PRK05653 4 QGKTALVTGA-SRGIGRAIALRLAA-----DGAKVVIYDSNE 39 (246)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHH-----CCCEEEEEeCCh
Confidence 3467999999 58999 88888888 899988776553
No 253
>PRK07024 short chain dehydrogenase; Provisional
Probab=43.71 E-value=25 Score=35.50 Aligned_cols=32 Identities=9% Similarity=0.059 Sum_probs=26.7
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEecc
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGL 73 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~ 73 (635)
+|-++|||| -|+|| .+...|.. +|++|..+-.
T Consensus 2 ~~~vlItGa-s~gIG~~la~~l~~-----~G~~v~~~~r 34 (257)
T PRK07024 2 PLKVFITGA-SSGIGQALAREYAR-----QGATLGLVAR 34 (257)
T ss_pred CCEEEEEcC-CcHHHHHHHHHHHH-----CCCEEEEEeC
Confidence 467999999 68999 99999988 8999877543
No 254
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.48 E-value=29 Score=34.18 Aligned_cols=30 Identities=3% Similarity=0.029 Sum_probs=25.5
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
+.|.|+||||- ++|| .+.+.|.+ +|++|..
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~-----~G~~V~~ 34 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALK-----EGAQVCI 34 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHH-----CCCEEEE
Confidence 35789999995 8999 89999998 8988876
No 255
>PRK08219 short chain dehydrogenase; Provisional
Probab=43.34 E-value=24 Score=34.40 Aligned_cols=32 Identities=13% Similarity=-0.031 Sum_probs=24.5
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEecc
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGL 73 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~ 73 (635)
++|.|+||||- ++|| ++.+.|.. + ++|..+-.
T Consensus 2 ~~~~vlVtG~~-g~iG~~l~~~l~~-----~-~~V~~~~r 34 (227)
T PRK08219 2 ERPTALITGAS-RGIGAAIARELAP-----T-HTLLLGGR 34 (227)
T ss_pred CCCEEEEecCC-cHHHHHHHHHHHh-----h-CCEEEEeC
Confidence 46889999994 7889 88888888 6 66666543
No 256
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=43.29 E-value=28 Score=35.22 Aligned_cols=32 Identities=6% Similarity=-0.001 Sum_probs=26.8
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEec
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFG 72 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K 72 (635)
+-|-++|||| -|||| .+.+.|-. +|++|..+-
T Consensus 5 ~~k~vlVtGa-s~gIG~~ia~~l~~-----~G~~V~~~~ 37 (263)
T PRK06200 5 HGQVALITGG-GSGIGRALVERFLA-----EGARVAVLE 37 (263)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHH-----CCCEEEEEe
Confidence 3478999998 58999 89999989 899987753
No 257
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=43.19 E-value=27 Score=34.27 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=77.7
Q ss_pred EEEEccccccchh------hHHHHHHhcCcCCCCceeEEeccCCccccCCCCCCccCcceEEEccCCccccCCCCccccc
Q 006689 38 YMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFGLDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERF 111 (635)
Q Consensus 38 ~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K~DpYlN~d~gtmsp~eHGEvfV~~DG~E~DlDlG~YeRf 111 (635)
-|||||- =.+.| .|.+.|+. +|.+|...| |.++|.. + |=|.-...++
T Consensus 2 ~i~I~~t-~t~vGKT~vslgL~~~l~~-----~g~~v~~~K-------------Pi~~~~~---~-----d~d~~~~~~~ 54 (199)
T PF13500_consen 2 TIFITGT-DTGVGKTVVSLGLARALRR-----RGIKVGYFK-------------PIQTGPE---D-----DEDAELIREL 54 (199)
T ss_dssp EEEEEES-SSSSSHHHHHHHHHHHHHH-----TTSEEEEEE-------------EEEESCC---C-----SSHHHHHHHH
T ss_pred EEEEEeC-CCCCCHHHHHHHHHHHHHh-----CCCceEEEe-------------eeEecCC---C-----CchHHHHHHH
Confidence 4666652 23444 66778999 999998665 8888876 1 2244444566
Q ss_pred cCCCCCCC--CcccchHhHHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCCcccccC
Q 006689 112 MDIKLTRD--NNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIE 189 (635)
Q Consensus 112 l~~~l~~~--~nittGkiy~~vi~kEr~g~ylG~tvQviPHit~~i~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdie 189 (635)
.+...+.. +-++-..-....+..++.|. .++ .++|+ .++++ .+.|++|||=-|.+. .
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~i~--~~~l~--------~~~D~vlVEGag~~~--~ 113 (199)
T PF13500_consen 55 FGLSEPPDDPSPYTFDEPASPHLAAELEGV----DID-----LERII--YKELA--------EEYDVVLVEGAGGLM--V 113 (199)
T ss_dssp CCTCCCHHHHECEEESSSS-HHHHHHHHT-------------HHHHH--HHHCH--------TTTCEEEEEESSSTT--S
T ss_pred hCCCcccccccccccCcccCHHHHhhccCC----ccc-----HHHHH--HHHHh--------hcCCEEEEeCCcccC--c
Confidence 65544322 22222222223333443331 111 22222 24443 478999999433333 2
Q ss_pred cchHHHHHHHhhhhcCCCCEEEEeeeeeeeecCCCccccCC--ccchhhhhhcCCCcccEEEEee
Q 006689 190 SMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKP--TQHSVRGLRGQGLTPNILACRS 252 (635)
Q Consensus 190 s~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~KtKp--tQ~svk~Lrs~Gi~pd~iv~R~ 252 (635)
....-+-..++...+|-. +++ +.. ++..| + |..+++.++..|+..-++|+-.
T Consensus 114 ~~~~~~~n~dia~~L~a~-vIl-------V~~--~~~g~-i~~~l~~~~~~~~~g~~v~GvI~N~ 167 (199)
T PF13500_consen 114 PIFSGDLNADIAKALGAP-VIL-------VAS--GRLGT-INHTLLTIEALKQRGIRVLGVILNR 167 (199)
T ss_dssp ECCTTEEHHHHHHHHT-E-EEE-------EEE--SSTTH-HHHHHHHHHHHHCTTS-EEEEEEEE
T ss_pred ccccChHHHHHHHHcCCC-EEE-------EeC--CCCCC-HHHHHHHHHHHHhcCCCEEEEEEEC
Confidence 222212333444445422 222 221 22222 2 2346677888999999998866
No 258
>PRK05867 short chain dehydrogenase; Provisional
Probab=43.19 E-value=30 Score=34.75 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=26.4
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
++-|-++|||| -|||| .+.+.|-. +|++|...
T Consensus 7 ~~~k~vlVtGa-s~gIG~~ia~~l~~-----~G~~V~~~ 39 (253)
T PRK05867 7 LHGKRALITGA-STGIGKRVALAYVE-----AGAQVAIA 39 (253)
T ss_pred CCCCEEEEECC-CchHHHHHHHHHHH-----CCCEEEEE
Confidence 34588999998 58999 89998888 89988663
No 259
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=43.06 E-value=50 Score=38.11 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=29.3
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEehhH
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 435 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGICLGm 435 (635)
.++|.||.-||=|+ ++.+++.+...++|+|||=+|.
T Consensus 261 ~~~DlVIsiGGDGT-----lL~Aar~~~~~~iPILGIN~G~ 296 (508)
T PLN02935 261 TKVDLVITLGGDGT-----VLWAASMFKGPVPPVVPFSMGS 296 (508)
T ss_pred cCCCEEEEECCcHH-----HHHHHHHhccCCCcEEEEeCCC
Confidence 46899999998553 6778888777789999998774
No 260
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.04 E-value=21 Score=37.67 Aligned_cols=36 Identities=31% Similarity=0.301 Sum_probs=29.6
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEehhH
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 435 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGICLGm 435 (635)
.++|.|++=||=|+ ++.+++.+...++|+|||=+|.
T Consensus 32 ~~~D~vi~iGGDGT-----~L~a~~~~~~~~iPilGIN~G~ 67 (259)
T PRK00561 32 DGADYLFVLGGDGF-----FVSTAANYNCAGCKVVGINTGH 67 (259)
T ss_pred CCCCEEEEECCcHH-----HHHHHHHhcCCCCcEEEEecCC
Confidence 45799999998553 6778888877899999999885
No 261
>PRK06196 oxidoreductase; Provisional
Probab=43.01 E-value=26 Score=36.85 Aligned_cols=33 Identities=12% Similarity=-0.017 Sum_probs=27.8
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEec
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFG 72 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K 72 (635)
+..|.|+||||- +||| .+.+.|-. +|++|...=
T Consensus 24 l~~k~vlITGas-ggIG~~~a~~L~~-----~G~~Vv~~~ 57 (315)
T PRK06196 24 LSGKTAIVTGGY-SGLGLETTRALAQ-----AGAHVIVPA 57 (315)
T ss_pred CCCCEEEEeCCC-chHHHHHHHHHHH-----CCCEEEEEe
Confidence 345899999986 9999 89999988 899988753
No 262
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.98 E-value=33 Score=33.80 Aligned_cols=33 Identities=3% Similarity=-0.088 Sum_probs=27.3
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEecc
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGL 73 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~ 73 (635)
+.|.++|||| -++|| ++...|.. +|++|..+-.
T Consensus 4 ~~k~~lVtGa-s~~iG~~ia~~l~~-----~G~~v~~~~r 37 (235)
T PRK06550 4 MTKTVLITGA-ASGIGLAQARAFLA-----QGAQVYGVDK 37 (235)
T ss_pred CCCEEEEcCC-CchHHHHHHHHHHH-----CCCEEEEEeC
Confidence 3578999988 68999 89999988 8999987643
No 263
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=42.90 E-value=1.5e+02 Score=33.64 Aligned_cols=66 Identities=20% Similarity=0.359 Sum_probs=39.9
Q ss_pred CCCCcEEEEeeCCcccccCcchHHHHHHHhhhhcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhc--CCCcccEE
Q 006689 171 EGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRG--QGLTPNIL 248 (635)
Q Consensus 171 ~~~~dv~i~EiGGTvGdies~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~KtKptQ~svk~Lrs--~Gi~pd~i 248 (635)
..++|+|||...|-.. +.. .-++.++++..-+.++.+++| +.+. | .|.+++..+. ..+..+++
T Consensus 180 ~~~~DvVIIDTaGr~~-~d~-~l~~eL~~i~~~~~p~e~lLV-------vda~----t--gq~~~~~a~~f~~~v~i~gi 244 (428)
T TIGR00959 180 ENGFDVVIVDTAGRLQ-IDE-ELMEELAAIKEILNPDEILLV-------VDAM----T--GQDAVNTAKTFNERLGLTGV 244 (428)
T ss_pred hcCCCEEEEeCCCccc-cCH-HHHHHHHHHHHhhCCceEEEE-------Eecc----c--hHHHHHHHHHHHhhCCCCEE
Confidence 3568999999999865 322 356777888877766554322 2221 2 2566654443 23556787
Q ss_pred EEe
Q 006689 249 ACR 251 (635)
Q Consensus 249 v~R 251 (635)
|+-
T Consensus 245 IlT 247 (428)
T TIGR00959 245 VLT 247 (428)
T ss_pred EEe
Confidence 754
No 264
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=42.81 E-value=87 Score=33.47 Aligned_cols=39 Identities=21% Similarity=0.408 Sum_probs=30.6
Q ss_pred HHhccCCCEEEECCCCCCC-c-chhHHHHHHHHHHcCCCEE
Q 006689 391 WKLLKGADGILVPGGFGNR-G-VQGKILAAKYAREHRIPYL 429 (635)
Q Consensus 391 ~~~L~~~DGIllPGGfG~r-g-~eg~i~air~are~~iP~L 429 (635)
.+.|...++|+|.+|-|-. + ...+-+.++|++++++|+.
T Consensus 96 ~k~L~RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~V 136 (306)
T KOG3974|consen 96 EKLLQRLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLV 136 (306)
T ss_pred HHHHhheeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEE
Confidence 3457889999999988863 3 2556777899999999976
No 265
>PRK07326 short chain dehydrogenase; Provisional
Probab=42.77 E-value=30 Score=34.04 Aligned_cols=33 Identities=9% Similarity=0.002 Sum_probs=26.9
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccC
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLD 74 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~D 74 (635)
.|.|+|||| -++|| .+.+.|.. +|++|..+-.+
T Consensus 6 ~~~ilItGa-tg~iG~~la~~l~~-----~g~~V~~~~r~ 39 (237)
T PRK07326 6 GKVALITGG-SKGIGFAIAEALLA-----EGYKVAITARD 39 (237)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHH-----CCCEEEEeeCC
Confidence 488999998 78899 88888888 89988775443
No 266
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=42.76 E-value=2.9e+02 Score=31.45 Aligned_cols=36 Identities=6% Similarity=0.016 Sum_probs=30.1
Q ss_pred CCeEEEEccccccchh------hHHHHHHhcCcCCCCceeEEeccCCcc
Q 006689 35 NLQYMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFGLDPYL 77 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K~DpYl 77 (635)
+.+.|.++| ..|.| .|+..|+. +|++|..+-.|||-
T Consensus 99 ~~~vi~lvG--~~GvGKTTtaaKLA~~l~~-----~G~kV~lV~~D~~R 140 (429)
T TIGR01425 99 KQNVIMFVG--LQGSGKTTTCTKLAYYYQR-----KGFKPCLVCADTFR 140 (429)
T ss_pred CCeEEEEEC--CCCCCHHHHHHHHHHHHHH-----CCCCEEEEcCcccc
Confidence 357888888 68899 67777888 89999999999885
No 267
>PRK08303 short chain dehydrogenase; Provisional
Probab=42.75 E-value=28 Score=36.80 Aligned_cols=31 Identities=3% Similarity=-0.140 Sum_probs=26.8
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+-|.++||||- |||| .+.+.|-. .|++|.+.
T Consensus 7 ~~k~~lITGgs-~GIG~aia~~la~-----~G~~Vv~~ 38 (305)
T PRK08303 7 RGKVALVAGAT-RGAGRGIAVELGA-----AGATVYVT 38 (305)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHH-----CCCEEEEE
Confidence 45899999986 8999 99999988 89998774
No 268
>PRK08643 acetoin reductase; Validated
Probab=42.75 E-value=29 Score=34.79 Aligned_cols=30 Identities=10% Similarity=0.025 Sum_probs=25.3
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
.|-++||||- |+|| ++.+.|-+ +|++|..+
T Consensus 2 ~k~~lItGas-~giG~~la~~l~~-----~G~~v~~~ 32 (256)
T PRK08643 2 SKVALVTGAG-QGIGFAIAKRLVE-----DGFKVAIV 32 (256)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHH-----CCCEEEEE
Confidence 4778999875 9999 99999988 89988764
No 269
>PRK12937 short chain dehydrogenase; Provisional
Probab=42.69 E-value=26 Score=34.58 Aligned_cols=29 Identities=7% Similarity=-0.080 Sum_probs=25.3
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
.|.|+|||| -++|| ++.+.|-. +|++|..
T Consensus 5 ~~~vlItG~-~~~iG~~la~~l~~-----~g~~v~~ 34 (245)
T PRK12937 5 NKVAIVTGA-SRGIGAAIARRLAA-----DGFAVAV 34 (245)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHH-----CCCEEEE
Confidence 488999999 59999 99999999 8988765
No 270
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=42.62 E-value=1.3e+02 Score=30.17 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=21.8
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEE
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 431 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGI 431 (635)
.++|||++.+...+ .....++.+++.++|+..+
T Consensus 56 ~~vdgiIi~~~~~~----~~~~~~~~~~~~~iPvV~~ 88 (275)
T cd06320 56 KGYKGLLFSPISDV----NLVPAVERAKKKGIPVVNV 88 (275)
T ss_pred hCCCEEEECCCChH----HhHHHHHHHHHCCCeEEEE
Confidence 47999998653221 1223467777889998765
No 271
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.54 E-value=31 Score=33.06 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=28.2
Q ss_pred hccCCCEEEECCCCCCCcchhHHHHHHHHHH--cCCCEEEEeh
Q 006689 393 LLKGADGILVPGGFGNRGVQGKILAAKYARE--HRIPYLGICL 433 (635)
Q Consensus 393 ~L~~~DGIllPGGfG~rg~eg~i~air~are--~~iP~LGICL 433 (635)
.+.++|.|++-||-.-|.+.-..+-+|...| .+.|+.|+|+
T Consensus 82 ~~n~aDvvVLlGGLaMP~~gv~~d~~kel~ee~~~kkliGvCf 124 (154)
T COG4090 82 ELNSADVVVLLGGLAMPKIGVTPDDAKELLEELGNKKLIGVCF 124 (154)
T ss_pred ccccccEEEEEcccccCcCCCCHHHHHHHHHhcCCCceEEeeH
Confidence 4567999999999776654333444444443 4579999995
No 272
>PRK07201 short chain dehydrogenase; Provisional
Probab=42.49 E-value=24 Score=40.85 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=27.3
Q ss_pred CCCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 33 PLNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 33 ~~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+++.|.++|||| -|||| ++.+.|-. +|++|..+
T Consensus 368 ~~~~k~vlItGa-s~giG~~la~~l~~-----~G~~V~~~ 401 (657)
T PRK07201 368 PLVGKVVLITGA-SSGIGRATAIKVAE-----AGATVFLV 401 (657)
T ss_pred CCCCCEEEEeCC-CCHHHHHHHHHHHH-----CCCEEEEE
Confidence 344689999999 48999 99999988 89988774
No 273
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=42.35 E-value=30 Score=34.76 Aligned_cols=33 Identities=9% Similarity=-0.033 Sum_probs=26.2
Q ss_pred CCCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 33 PLNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 33 ~~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
.++-|-|+|||| -|+|| ++.+.|-+ +|++|...
T Consensus 9 ~~~~k~ilItGa-~g~IG~~la~~l~~-----~G~~V~~~ 42 (259)
T PRK08213 9 DLSGKTALVTGG-SRGLGLQIAEALGE-----AGARVVLS 42 (259)
T ss_pred CcCCCEEEEECC-CchHHHHHHHHHHH-----cCCEEEEE
Confidence 344578999986 58999 88888888 89887664
No 274
>PRK07062 short chain dehydrogenase; Provisional
Probab=42.30 E-value=31 Score=34.84 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=28.7
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccC
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLD 74 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~D 74 (635)
++.|.++||||- |||| .+.+.|-+ +|++|...-.+
T Consensus 6 l~~k~~lItGas-~giG~~ia~~l~~-----~G~~V~~~~r~ 41 (265)
T PRK07062 6 LEGRVAVVTGGS-SGIGLATVELLLE-----AGASVAICGRD 41 (265)
T ss_pred cCCCEEEEeCCC-chHHHHHHHHHHH-----CCCeEEEEeCC
Confidence 345899999975 8999 99999999 99999875444
No 275
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=42.20 E-value=22 Score=37.26 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=30.5
Q ss_pred ccCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEehhH
Q 006689 394 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 435 (635)
Q Consensus 394 L~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGICLGm 435 (635)
+.++|.|++=||=|+ ++.+++.+...++|+|||=+|.
T Consensus 23 ~~~~Dlvi~iGGDGT-----lL~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 23 IEEADVIVALGGDGF-----MLQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred cccCCEEEEECCCHH-----HHHHHHHhcCCCCeEEEEeCCC
Confidence 457899999998553 6788888877899999999885
No 276
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=42.07 E-value=30 Score=34.97 Aligned_cols=31 Identities=6% Similarity=0.062 Sum_probs=26.1
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
++.|-|+||||- |||| .+...|-. +|++|..
T Consensus 6 l~~k~vlItGas-~gIG~~ia~~l~~-----~G~~v~~ 37 (260)
T PRK08416 6 MKGKTLVISGGT-RGIGKAIVYEFAQ-----SGVNIAF 37 (260)
T ss_pred cCCCEEEEeCCC-chHHHHHHHHHHH-----CCCEEEE
Confidence 446899999886 9999 99998888 8998765
No 277
>PRK06523 short chain dehydrogenase; Provisional
Probab=42.04 E-value=33 Score=34.40 Aligned_cols=34 Identities=6% Similarity=-0.113 Sum_probs=28.2
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccC
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLD 74 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~D 74 (635)
+-|.|+||||- ++|| ++.+.|.. +|++|...-.+
T Consensus 8 ~~k~vlItGas-~gIG~~ia~~l~~-----~G~~v~~~~r~ 42 (260)
T PRK06523 8 AGKRALVTGGT-KGIGAATVARLLE-----AGARVVTTARS 42 (260)
T ss_pred CCCEEEEECCC-CchhHHHHHHHHH-----CCCEEEEEeCC
Confidence 35889999984 7999 99999999 99999877554
No 278
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=41.68 E-value=36 Score=35.92 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=25.9
Q ss_pred CeEEEEccccccchh------hHHHHHHhcCcCCC-C-ceeEEeccCCcc
Q 006689 36 LQYMFLCLNECACIN------FFSLFLVQNCQYHP-N-THFNLFGLDPYL 77 (635)
Q Consensus 36 ~k~i~vtggv~s~lg------s~g~ll~~~~~~~~-g-~~v~~~K~DpYl 77 (635)
.+.|.++|. +|.| .|+..+.. + | ++|..+.+|||-
T Consensus 194 ~~vi~~vGp--tGvGKTTt~~kLa~~~~~-----~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 194 GGVIALVGP--TGVGKTTTLAKLAARFVL-----EHGNKKVALITTDTYR 236 (282)
T ss_pred CeEEEEECC--CCCCHHHHHHHHHHHHHH-----HcCCCeEEEEECCccc
Confidence 467777776 8999 45555544 4 5 999999999874
No 279
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=41.64 E-value=1.3e+02 Score=30.80 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=21.5
Q ss_pred hHHHHHHhcCcCCCCceeEEeccCCcccc
Q 006689 51 FFSLFLVQNCQYHPNTHFNLFGLDPYLNT 79 (635)
Q Consensus 51 s~g~ll~~~~~~~~g~~v~~~K~DpYlN~ 79 (635)
.|+..|.. +|++|-.+-.||--|.
T Consensus 21 nLA~~la~-----~G~~VlliD~DpQ~s~ 44 (231)
T PRK13849 21 GLCAALAS-----DGKRVALFEADENRPL 44 (231)
T ss_pred HHHHHHHh-----CCCcEEEEeCCCCCCH
Confidence 88999999 9999999999997653
No 280
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=41.57 E-value=26 Score=31.92 Aligned_cols=91 Identities=18% Similarity=0.244 Sum_probs=50.5
Q ss_pred cccchHhHHHHHhhhhcCCCCCCeeEEccc-----chHHHHHHHHHHhcccCCCCCCCCcEEEEeeCCcccccCcc----
Q 006689 121 NITTGKIYQSVIDKERKGDYLGKTVQVVPH-----ITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESM---- 191 (635)
Q Consensus 121 nittGkiy~~vi~kEr~g~ylG~tvQviPH-----it~~i~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdies~---- 191 (635)
+.+++.-|...+.++ .+..+.|... -+..+..++.+...- + ....||++||++|+ .|+-..
T Consensus 12 ~~~~~~~~~~~l~~~-----~~~~~~~~n~~~~G~~~~~~~~~~~~~~~~-~--~~~~~d~vvi~~G~--ND~~~~~~~~ 81 (179)
T PF13472_consen 12 GAPNNGSYPDRLAER-----PGRGIEVYNLGVSGATSSDFLARLQRDVLR-F--KDPKPDLVVISFGT--NDVLNGDEND 81 (179)
T ss_dssp TTSSCTSHHHHHHHH-----HTCCEEEEEEE-TT-BHHHHHHHHHHHCHH-H--CGTTCSEEEEE--H--HHHCTCTTCH
T ss_pred CCCCCCCHHHHHHHh-----hCCCcEEEEEeecCccHhHHHHHHHHHHhh-h--ccCCCCEEEEEccc--cccccccccc
Confidence 334557788888875 4455555432 122233333322100 0 25689999999995 555442
Q ss_pred ----hHHHHHHHhhhhcCCCCEEEEeeeeeeeecC
Q 006689 192 ----PFIEALGQFSYRVGPGNFCLIHVSLVPVLNV 222 (635)
Q Consensus 192 ----pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~ 222 (635)
-|.++++++...+.+.. -.+.+++.|+...
T Consensus 82 ~~~~~~~~~l~~~i~~~~~~~-~vi~~~~~~~~~~ 115 (179)
T PF13472_consen 82 TSPEQYEQNLRRIIEQLRPHG-PVILVSPPPRGPD 115 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-EEEEEE-SCSSSS
T ss_pred ccHHHHHHHHHHHHHhhcccC-cEEEecCCCcccc
Confidence 28888999888886666 4455555576644
No 281
>PRK06483 dihydromonapterin reductase; Provisional
Probab=41.53 E-value=32 Score=34.02 Aligned_cols=30 Identities=7% Similarity=-0.012 Sum_probs=26.2
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+|-++||||- +||| .+.+.|.. +|++|...
T Consensus 2 ~k~vlItGas-~gIG~~ia~~l~~-----~G~~V~~~ 32 (236)
T PRK06483 2 PAPILITGAG-QRIGLALAWHLLA-----QGQPVIVS 32 (236)
T ss_pred CceEEEECCC-ChHHHHHHHHHHH-----CCCeEEEE
Confidence 5789999986 8999 99999999 89998775
No 282
>PRK06940 short chain dehydrogenase; Provisional
Probab=41.52 E-value=25 Score=36.18 Aligned_cols=28 Identities=7% Similarity=-0.063 Sum_probs=22.5
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
-|.++|||+ |||| .+.+.| . +|++|...
T Consensus 2 ~k~~lItGa--~gIG~~la~~l-~-----~G~~Vv~~ 30 (275)
T PRK06940 2 KEVVVVIGA--GGIGQAIARRV-G-----AGKKVLLA 30 (275)
T ss_pred CCEEEEECC--ChHHHHHHHHH-h-----CCCEEEEE
Confidence 478999997 8999 888888 5 68887653
No 283
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=41.22 E-value=1.5e+02 Score=30.10 Aligned_cols=77 Identities=18% Similarity=0.202 Sum_probs=47.4
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcc
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 411 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~ 411 (635)
-+|.+||- -..+...|.++-+..|+.... =+|++-. |+... .+....+|.|++.+ +
T Consensus 62 ~~ILfVgt---k~~~~~~V~~~A~~~g~~~v~---~RWlgGt-LTN~~-----------~~~~~~Pdlliv~d----p-- 117 (196)
T TIGR01012 62 EDILVVSA---RIYGQKPVLKFAKVTGARAIA---GRFTPGT-FTNPM-----------QKAFREPEVVVVTD----P-- 117 (196)
T ss_pred CeEEEEec---CHHHHHHHHHHHHHhCCceEC---CeeCCCC-CCCcc-----------ccccCCCCEEEEEC----C--
Confidence 37999971 222444555555555555322 3687643 22111 02346789999975 2
Q ss_pred hhHHHHHHHHHHcCCCEEEEe
Q 006689 412 QGKILAAKYAREHRIPYLGIC 432 (635)
Q Consensus 412 eg~i~air~are~~iP~LGIC 432 (635)
.....|+++|..-+||+.|||
T Consensus 118 ~~~~~Av~EA~~l~IP~Iai~ 138 (196)
T TIGR01012 118 RADHQALKEASEVGIPIVALC 138 (196)
T ss_pred ccccHHHHHHHHcCCCEEEEe
Confidence 223678999999999999998
No 284
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=41.19 E-value=40 Score=33.48 Aligned_cols=49 Identities=24% Similarity=0.381 Sum_probs=36.2
Q ss_pred cCCCEEEECCCCCCCc-------------c-hhHHHHHHHHHHcCCCEEEEehhHHHHHHHHh
Q 006689 395 KGADGILVPGGFGNRG-------------V-QGKILAAKYAREHRIPYLGICLGMQVAVIEFA 443 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg-------------~-eg~i~air~are~~iP~LGICLGmQllaie~G 443 (635)
...|++++|||||... + .....+++...+.++|+==||.-=-++..-||
T Consensus 84 e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g 146 (217)
T COG3155 84 EELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFG 146 (217)
T ss_pred HhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcC
Confidence 4679999999999741 1 23566677777889999889987777765544
No 285
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=41.00 E-value=34 Score=34.01 Aligned_cols=31 Identities=10% Similarity=0.080 Sum_probs=25.2
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
|..|.++|||| -++|| .+.+.|.. +|++|..
T Consensus 2 ~~~~~vlItGa-~g~iG~~~a~~l~~-----~g~~v~~ 33 (250)
T PRK08063 2 FSGKVALVTGS-SRGIGKAIALRLAE-----EGYDIAV 33 (250)
T ss_pred CCCCEEEEeCC-CchHHHHHHHHHHH-----CCCEEEE
Confidence 34578999999 49999 88888888 8988764
No 286
>PRK09291 short chain dehydrogenase; Provisional
Probab=40.98 E-value=31 Score=34.45 Aligned_cols=30 Identities=7% Similarity=-0.071 Sum_probs=25.1
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+|.|+|||| -++|| ++.+.|.. +|++|...
T Consensus 2 ~~~vlVtGa-sg~iG~~ia~~l~~-----~G~~v~~~ 32 (257)
T PRK09291 2 SKTILITGA-GSGFGREVALRLAR-----KGHNVIAG 32 (257)
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHH-----CCCEEEEE
Confidence 477999998 57899 88898888 89988764
No 287
>PRK07063 short chain dehydrogenase; Provisional
Probab=40.91 E-value=34 Score=34.39 Aligned_cols=31 Identities=6% Similarity=-0.041 Sum_probs=26.2
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+.|-++||||- |||| ++.+.|-+ +|++|...
T Consensus 6 ~~k~vlVtGas-~gIG~~~a~~l~~-----~G~~vv~~ 37 (260)
T PRK07063 6 AGKVALVTGAA-QGIGAAIARAFAR-----EGAAVALA 37 (260)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHH-----CCCEEEEE
Confidence 45789999995 9999 89999988 89988764
No 288
>PRK07677 short chain dehydrogenase; Provisional
Probab=40.90 E-value=30 Score=34.75 Aligned_cols=30 Identities=3% Similarity=0.103 Sum_probs=25.9
Q ss_pred eEEEEccccccchh-hHHHHHHhcCcCCCCceeEEec
Q 006689 37 QYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFG 72 (635)
Q Consensus 37 k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K 72 (635)
|.++|||| -++|| ++.+.|.+ +|++|...=
T Consensus 2 k~~lItG~-s~giG~~ia~~l~~-----~G~~Vi~~~ 32 (252)
T PRK07677 2 KVVIITGG-SSGMGKAMAKRFAE-----EGANVVITG 32 (252)
T ss_pred CEEEEeCC-CChHHHHHHHHHHH-----CCCEEEEEe
Confidence 67899999 78999 99999999 999887753
No 289
>PRK08589 short chain dehydrogenase; Validated
Probab=40.83 E-value=34 Score=35.03 Aligned_cols=32 Identities=13% Similarity=0.004 Sum_probs=26.8
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+..|.++||||- +||| ++.+-|-. +|++|...
T Consensus 4 l~~k~vlItGas-~gIG~aia~~l~~-----~G~~vi~~ 36 (272)
T PRK08589 4 LENKVAVITGAS-TGIGQASAIALAQ-----EGAYVLAV 36 (272)
T ss_pred CCCCEEEEECCC-chHHHHHHHHHHH-----CCCEEEEE
Confidence 346889999984 8999 99999988 89998774
No 290
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=40.72 E-value=1.2e+02 Score=27.16 Aligned_cols=40 Identities=10% Similarity=0.100 Sum_probs=29.0
Q ss_pred ccCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEehhH
Q 006689 394 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 435 (635)
Q Consensus 394 L~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGICLGm 435 (635)
+..-|-+|+-.-.|. ....+++++.|++++.|+++|+-..
T Consensus 45 ~~~~d~vi~iS~sG~--t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (128)
T cd05014 45 VTPGDVVIAISNSGE--TDELLNLLPHLKRRGAPIIAITGNP 84 (128)
T ss_pred CCCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 344466666554443 4567999999999999999998643
No 291
>PRK12743 oxidoreductase; Provisional
Probab=40.43 E-value=32 Score=34.66 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=24.5
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
+|-++|||| -|+|| ++.+.|-. +|++|.+
T Consensus 2 ~k~vlItGa-s~giG~~~a~~l~~-----~G~~V~~ 31 (256)
T PRK12743 2 AQVAIVTAS-DSGIGKACALLLAQ-----QGFDIGI 31 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHH-----CCCEEEE
Confidence 577999998 59999 99998888 8888755
No 292
>PRK07478 short chain dehydrogenase; Provisional
Probab=40.40 E-value=35 Score=34.19 Aligned_cols=30 Identities=3% Similarity=-0.073 Sum_probs=25.6
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
.|.++||||- +||| ++.+.|-. +|++|...
T Consensus 6 ~k~~lItGas-~giG~~ia~~l~~-----~G~~v~~~ 36 (254)
T PRK07478 6 GKVAIITGAS-SGIGRAAAKLFAR-----EGAKVVVG 36 (254)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHH-----CCCEEEEE
Confidence 4789999986 9999 99999988 89988664
No 293
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=40.18 E-value=25 Score=37.07 Aligned_cols=37 Identities=41% Similarity=0.534 Sum_probs=28.0
Q ss_pred ccCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEehhH
Q 006689 394 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 435 (635)
Q Consensus 394 L~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGICLGm 435 (635)
..++|.|++-||=|+ ++.+++.+...++|+|||=.|.
T Consensus 74 ~~~~D~ii~lGGDGT-----~L~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 74 EEGVDLIIVLGGDGT-----FLRAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp CCCSSEEEEEESHHH-----HHHHHHHCTTST-EEEEEESSS
T ss_pred ccCCCEEEEECCCHH-----HHHHHHHhccCCCcEEeecCCC
Confidence 479999999998442 5667777766689999998764
No 294
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=40.09 E-value=30 Score=37.19 Aligned_cols=11 Identities=36% Similarity=0.673 Sum_probs=6.0
Q ss_pred EEcccCCCcCC
Q 006689 555 GVQFHPEYKSR 565 (635)
Q Consensus 555 GVQFHPE~ss~ 565 (635)
.=.+||.+...
T Consensus 281 ~R~~HP~Y~~~ 291 (302)
T PF08497_consen 281 TRRPHPSYKKK 291 (302)
T ss_pred CCCCCcccCCC
Confidence 44566666543
No 295
>PRK07023 short chain dehydrogenase; Provisional
Probab=39.96 E-value=35 Score=33.95 Aligned_cols=29 Identities=10% Similarity=-0.008 Sum_probs=24.9
Q ss_pred eEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 37 QYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 37 k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+-|+|||| -++|| .+.+.|-+ +|++|..+
T Consensus 2 ~~vlItGa-sggiG~~ia~~l~~-----~G~~v~~~ 31 (243)
T PRK07023 2 VRAIVTGH-SRGLGAALAEQLLQ-----PGIAVLGV 31 (243)
T ss_pred ceEEEecC-CcchHHHHHHHHHh-----CCCEEEEE
Confidence 35899998 78999 99999988 89998875
No 296
>PRK08265 short chain dehydrogenase; Provisional
Probab=39.88 E-value=36 Score=34.56 Aligned_cols=31 Identities=10% Similarity=0.035 Sum_probs=26.6
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+.|-++||||- |+|| ++.+.|-. +|++|...
T Consensus 5 ~~k~vlItGas-~gIG~~ia~~l~~-----~G~~V~~~ 36 (261)
T PRK08265 5 AGKVAIVTGGA-TLIGAAVARALVA-----AGARVAIV 36 (261)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHH-----CCCEEEEE
Confidence 35889999985 8999 99999988 89998875
No 297
>PRK12744 short chain dehydrogenase; Provisional
Probab=39.86 E-value=34 Score=34.40 Aligned_cols=30 Identities=3% Similarity=-0.015 Sum_probs=25.3
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
.|.++|||| -++|| ++.+.|.+ +|++|..+
T Consensus 8 ~k~vlItGa-~~gIG~~~a~~l~~-----~G~~vv~i 38 (257)
T PRK12744 8 GKVVLIAGG-AKNLGGLIARDLAA-----QGAKAVAI 38 (257)
T ss_pred CcEEEEECC-CchHHHHHHHHHHH-----CCCcEEEE
Confidence 488999997 88999 99999988 89886554
No 298
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=39.77 E-value=36 Score=34.30 Aligned_cols=34 Identities=3% Similarity=0.018 Sum_probs=27.5
Q ss_pred cCCCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 32 APLNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 32 ~~~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
.+++.|.++||||- ++|| ++.+.|-. +|++|.+.
T Consensus 3 ~~~~~k~~lItGa~-~gIG~~ia~~l~~-----~G~~vvi~ 37 (261)
T PRK08936 3 SDLEGKVVVITGGS-TGLGRAMAVRFGK-----EKAKVVIN 37 (261)
T ss_pred cCCCCCEEEEeCCC-ChHHHHHHHHHHH-----CCCEEEEE
Confidence 34567899999985 7999 99999988 89887653
No 299
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=39.72 E-value=36 Score=34.05 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=27.9
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccC
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLD 74 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~D 74 (635)
..|-|+|||| -++|| ++.+.|-. +|++|.+.=-+
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~-----~G~~v~~~~r~ 44 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAG-----AGAHVLVNGRN 44 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH-----cCCeEEEEeCC
Confidence 4578999997 69999 89998888 89998886443
No 300
>PRK06125 short chain dehydrogenase; Provisional
Probab=39.61 E-value=36 Score=34.29 Aligned_cols=33 Identities=9% Similarity=0.029 Sum_probs=27.5
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEecc
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGL 73 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~ 73 (635)
..|.++|||| -++|| ++...|.. +|++|.+.=.
T Consensus 6 ~~k~vlItG~-~~giG~~ia~~l~~-----~G~~V~~~~r 39 (259)
T PRK06125 6 AGKRVLITGA-SKGIGAAAAEAFAA-----EGCHLHLVAR 39 (259)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHH-----cCCEEEEEeC
Confidence 3589999998 68999 99999999 8998877533
No 301
>PRK09271 flavodoxin; Provisional
Probab=39.52 E-value=1.3e+02 Score=28.70 Aligned_cols=42 Identities=12% Similarity=-0.096 Sum_probs=20.9
Q ss_pred hccCCCEEEECC---CCCC-Cc-chhHHHHHHHHHHcCCCEEEEehh
Q 006689 393 LLKGADGILVPG---GFGN-RG-VQGKILAAKYAREHRIPYLGICLG 434 (635)
Q Consensus 393 ~L~~~DGIllPG---GfG~-rg-~eg~i~air~are~~iP~LGICLG 434 (635)
.+.++|+|+|.- |.|. |. +...+..++..+.+++++.-++.|
T Consensus 48 ~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~~~~~~k~~avfgsg 94 (160)
T PRK09271 48 DPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAETIGKPPNVAVFGTG 94 (160)
T ss_pred CcccCCEEEEECcccCCCcCCHHHHHHHHHHHHHhccCCeEEEEecC
Confidence 355789998876 2343 21 333333343332245555545543
No 302
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=39.26 E-value=34 Score=34.36 Aligned_cols=30 Identities=10% Similarity=0.012 Sum_probs=25.8
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
.|.|+|||| -++|| ++.+.|-+ +|++|..+
T Consensus 2 ~k~ilItG~-~~~IG~~la~~l~~-----~g~~vi~~ 32 (259)
T PRK12384 2 NQVAVVIGG-GQTLGAFLCHGLAE-----EGYRVAVA 32 (259)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHH-----CCCEEEEE
Confidence 478999998 58999 89999999 89988765
No 303
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=39.19 E-value=37 Score=34.16 Aligned_cols=31 Identities=3% Similarity=0.028 Sum_probs=26.4
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
.-|-++|||| -++|| ++.+.|-. .|++|.++
T Consensus 14 ~~k~vlItGa-s~gIG~~ia~~l~~-----~G~~v~~~ 45 (258)
T PRK06935 14 DGKVAIVTGG-NTGLGQGYAVALAK-----AGADIIIT 45 (258)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHH-----CCCEEEEE
Confidence 4588999998 68999 99999988 89988764
No 304
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=39.18 E-value=1.4e+02 Score=31.07 Aligned_cols=92 Identities=22% Similarity=0.262 Sum_probs=57.3
Q ss_pred ccEEEEEeccCCCcch---HH-HHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCC
Q 006689 331 PVRIAMVGKYTGLSDA---YL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGF 406 (635)
Q Consensus 331 ~v~IalVGkY~~l~Da---Y~-SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGf 406 (635)
..+|+.| -+-+..-. |. -..++|...|+.+.- ++-.. .| -......|..+|.|.|.||-
T Consensus 32 ~~~i~FI-PtAs~~~~~~~Yv~k~~~~l~~lg~~v~~------L~l~~--------~~--~~~Ie~~l~~~d~IyVgGGN 94 (224)
T COG3340 32 RKTIAFI-PTASVDSEDDFYVEKVRNALAKLGLEVSE------LHLSK--------PP--LAAIENKLMKADIIYVGGGN 94 (224)
T ss_pred CceEEEE-ecCccccchHHHHHHHHHHHHHcCCeeee------eeccC--------CC--HHHHHHhhhhccEEEECCch
Confidence 4589998 45333212 32 456889988887542 11110 01 01133457789999999971
Q ss_pred CCC-----cchhHHHHHHHHHHcCCCEEEEehhHHHHH
Q 006689 407 GNR-----GVQGKILAAKYAREHRIPYLGICLGMQVAV 439 (635)
Q Consensus 407 G~r-----g~eg~i~air~are~~iP~LGICLGmQlla 439 (635)
=-. ...|....++.+..+++|+.|+-.|.-+.+
T Consensus 95 TF~LL~~lke~gld~iIr~~vk~G~~YiG~SAGA~ia~ 132 (224)
T COG3340 95 TFNLLQELKETGLDDIIRERVKAGTPYIGWSAGANIAG 132 (224)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHcCCceEEeccCceeec
Confidence 100 124678889999999999999988765553
No 305
>PRK07985 oxidoreductase; Provisional
Probab=38.88 E-value=36 Score=35.51 Aligned_cols=30 Identities=3% Similarity=-0.003 Sum_probs=25.9
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
-|.++||||- +||| ++++.|-. +|++|.+.
T Consensus 49 ~k~vlITGas-~gIG~aia~~L~~-----~G~~Vi~~ 79 (294)
T PRK07985 49 DRKALVTGGD-SGIGRAAAIAYAR-----EGADVAIS 79 (294)
T ss_pred CCEEEEECCC-CcHHHHHHHHHHH-----CCCEEEEe
Confidence 3899999985 9999 99999999 89988763
No 306
>PRK07806 short chain dehydrogenase; Provisional
Probab=38.86 E-value=40 Score=33.51 Aligned_cols=31 Identities=13% Similarity=0.031 Sum_probs=25.1
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
++.|-|+|||| -|+|| .+.+.|.+ +|++|..
T Consensus 4 ~~~k~vlItGa-sggiG~~l~~~l~~-----~G~~V~~ 35 (248)
T PRK07806 4 LPGKTALVTGS-SRGIGADTAKILAG-----AGAHVVV 35 (248)
T ss_pred CCCcEEEEECC-CCcHHHHHHHHHHH-----CCCEEEE
Confidence 33488999998 48999 88888888 8988866
No 307
>PRK06057 short chain dehydrogenase; Provisional
Probab=38.82 E-value=39 Score=33.96 Aligned_cols=32 Identities=9% Similarity=-0.115 Sum_probs=27.3
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+..|-|+|||| -++|| ++.+.|.+ +|++|..+
T Consensus 5 ~~~~~vlItGa-sggIG~~~a~~l~~-----~G~~v~~~ 37 (255)
T PRK06057 5 LAGRVAVITGG-GSGIGLATARRLAA-----EGATVVVG 37 (255)
T ss_pred CCCCEEEEECC-CchHHHHHHHHHHH-----cCCEEEEE
Confidence 44588999999 58999 99999989 89998875
No 308
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=38.77 E-value=31 Score=37.50 Aligned_cols=33 Identities=6% Similarity=-0.062 Sum_probs=29.4
Q ss_pred cCCCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 32 APLNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 32 ~~~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
.+...|||||||. =||+| ++++-|-+ +||+|.+
T Consensus 25 ~~~~~k~VlITGC-DSGfG~~LA~~L~~-----~Gf~V~A 58 (322)
T KOG1610|consen 25 DSLSDKAVLITGC-DSGFGRLLAKKLDK-----KGFRVFA 58 (322)
T ss_pred cccCCcEEEEecC-CcHHHHHHHHHHHh-----cCCEEEE
Confidence 4556899999986 59999 99999999 9999997
No 309
>PRK07576 short chain dehydrogenase; Provisional
Probab=38.73 E-value=37 Score=34.58 Aligned_cols=35 Identities=6% Similarity=-0.015 Sum_probs=28.5
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccCC
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLDP 75 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~Dp 75 (635)
+.|-|+|||| -++|| .+.+.|.. +|++|..+=.++
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~-----~G~~V~~~~r~~ 43 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFAR-----AGANVAVASRSQ 43 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence 3578999987 78999 89999999 999988864443
No 310
>PRK12747 short chain dehydrogenase; Provisional
Probab=38.63 E-value=36 Score=34.06 Aligned_cols=29 Identities=7% Similarity=-0.041 Sum_probs=25.1
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
.|.++||||- |||| ++.+.|.. .|++|..
T Consensus 4 ~k~~lItGas-~gIG~~ia~~l~~-----~G~~v~~ 33 (252)
T PRK12747 4 GKVALVTGAS-RGIGRAIAKRLAN-----DGALVAI 33 (252)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHH-----CCCeEEE
Confidence 4889999975 8999 99999998 8998865
No 311
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=38.43 E-value=64 Score=34.21 Aligned_cols=35 Identities=46% Similarity=0.589 Sum_probs=29.2
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEehh
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 434 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGICLG 434 (635)
+.+|.|++-||=|. ++.+++++...++|++||=+|
T Consensus 54 ~~~d~ivvlGGDGt-----lL~~~~~~~~~~~pilgin~G 88 (281)
T COG0061 54 EKADLIVVLGGDGT-----LLRAARLLARLDIPVLGINLG 88 (281)
T ss_pred cCceEEEEeCCcHH-----HHHHHHHhccCCCCEEEEeCC
Confidence 57888888887553 678888888888999999999
No 312
>PRK07856 short chain dehydrogenase; Provisional
Probab=38.36 E-value=40 Score=33.78 Aligned_cols=34 Identities=6% Similarity=-0.006 Sum_probs=27.7
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccC
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLD 74 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~D 74 (635)
+.|.++||||- ++|| .+.+.|.. +|++|...-.+
T Consensus 5 ~~k~~lItGas-~gIG~~la~~l~~-----~g~~v~~~~r~ 39 (252)
T PRK07856 5 TGRVVLVTGGT-RGIGAGIARAFLA-----AGATVVVCGRR 39 (252)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHH-----CCCEEEEEeCC
Confidence 35889999995 8999 89999988 89988775433
No 313
>PRK05717 oxidoreductase; Validated
Probab=38.26 E-value=38 Score=34.01 Aligned_cols=31 Identities=13% Similarity=0.034 Sum_probs=26.1
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+.|.++||||- ++|| .+.+.|-+ +|++|..+
T Consensus 9 ~~k~vlItG~s-g~IG~~~a~~l~~-----~g~~v~~~ 40 (255)
T PRK05717 9 NGRVALVTGAA-RGIGLGIAAWLIA-----EGWQVVLA 40 (255)
T ss_pred CCCEEEEeCCc-chHHHHHHHHHHH-----cCCEEEEE
Confidence 35889999995 8999 88888888 89888775
No 314
>PRK06482 short chain dehydrogenase; Provisional
Probab=38.23 E-value=34 Score=34.79 Aligned_cols=31 Identities=6% Similarity=-0.079 Sum_probs=25.8
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEec
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFG 72 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K 72 (635)
+|-++|||| -++|| .+..-|.. +|++|..+-
T Consensus 2 ~k~vlVtGa-sg~IG~~la~~L~~-----~g~~v~~~~ 33 (276)
T PRK06482 2 SKTWFITGA-SSGFGRGMTERLLA-----RGDRVAATV 33 (276)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHH-----CCCEEEEEe
Confidence 467899999 68999 88888888 899988753
No 315
>PRK06720 hypothetical protein; Provisional
Probab=37.96 E-value=40 Score=32.83 Aligned_cols=31 Identities=10% Similarity=-0.012 Sum_probs=25.3
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+.|.++|||| -|||| ++...|-. +|++|...
T Consensus 15 ~gk~~lVTGa-~~GIG~aia~~l~~-----~G~~V~l~ 46 (169)
T PRK06720 15 AGKVAIVTGG-GIGIGRNTALLLAK-----QGAKVIVT 46 (169)
T ss_pred CCCEEEEecC-CChHHHHHHHHHHH-----CCCEEEEE
Confidence 3589999999 57899 99998888 88877654
No 316
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=37.92 E-value=39 Score=33.90 Aligned_cols=30 Identities=7% Similarity=-0.068 Sum_probs=25.7
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
.|-++||||- ++|| ++.+.|-+ +|++|..+
T Consensus 6 ~~~vlItGas-~~iG~~ia~~l~~-----~G~~v~~~ 36 (257)
T PRK07067 6 GKVALLTGAA-SGIGEAVAERYLA-----EGARVVIA 36 (257)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHH-----cCCEEEEE
Confidence 4789999964 8999 99999999 89998775
No 317
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=37.89 E-value=39 Score=34.87 Aligned_cols=32 Identities=6% Similarity=-0.103 Sum_probs=27.4
Q ss_pred CCeEEEEccccc-cchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNEC-ACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~-s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+-|.++||||-= |||| .+.+.|-. .|++|.+.
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~-----~Ga~V~~~ 39 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAA-----QGAELAFT 39 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHh-----CCCEEEEe
Confidence 358999999986 6999 99999988 89998763
No 318
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.87 E-value=39 Score=34.12 Aligned_cols=32 Identities=6% Similarity=-0.090 Sum_probs=27.2
Q ss_pred CCeEEEEcccc-ccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNE-CACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv-~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+.|.|+||||- .+||| .+++.|-+ +|.+|...
T Consensus 5 ~~k~vlVtGas~~~giG~~~a~~l~~-----~G~~vi~~ 38 (256)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELAE-----AGADIFFT 38 (256)
T ss_pred CCcEEEEECCCCCCChHHHHHHHHHH-----CCCeEEEE
Confidence 45889999998 48999 99999999 99988663
No 319
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=37.85 E-value=37 Score=33.67 Aligned_cols=30 Identities=7% Similarity=-0.046 Sum_probs=25.4
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
.-|.++|||| -++|| ++.+.|-. +|++|.+
T Consensus 2 ~~k~~lVtG~-s~giG~~~a~~l~~-----~G~~vv~ 32 (246)
T PRK12938 2 SQRIAYVTGG-MGGIGTSICQRLHK-----DGFKVVA 32 (246)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHH-----cCCEEEE
Confidence 3588999999 78999 99999988 8888765
No 320
>PRK07109 short chain dehydrogenase; Provisional
Probab=37.79 E-value=37 Score=36.38 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=27.4
Q ss_pred CCCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 33 PLNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 33 ~~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
++..|-|+|||| -|||| ++.+.|-. +|++|..+
T Consensus 5 ~l~~k~vlITGa-s~gIG~~la~~la~-----~G~~Vvl~ 38 (334)
T PRK07109 5 PIGRQVVVITGA-SAGVGRATARAFAR-----RGAKVVLL 38 (334)
T ss_pred CCCCCEEEEECC-CCHHHHHHHHHHHH-----CCCEEEEE
Confidence 345689999997 58999 99999988 89988764
No 321
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=37.70 E-value=2.9e+02 Score=24.43 Aligned_cols=38 Identities=21% Similarity=0.199 Sum_probs=26.4
Q ss_pred ccCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEeh
Q 006689 394 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 433 (635)
Q Consensus 394 L~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGICL 433 (635)
+..-|.+|+-.-.|.. +..+++++.++++++|+++|+-
T Consensus 58 ~~~~~~~i~iS~~g~~--~~~~~~~~~a~~~g~~iv~iT~ 95 (139)
T cd05013 58 LTPGDVVIAISFSGET--KETVEAAEIAKERGAKVIAITD 95 (139)
T ss_pred CCCCCEEEEEeCCCCC--HHHHHHHHHHHHcCCeEEEEcC
Confidence 4444555544434443 4578899999999999999875
No 322
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=37.59 E-value=39 Score=34.49 Aligned_cols=31 Identities=3% Similarity=-0.084 Sum_probs=26.1
Q ss_pred CCeEEEEccc-cccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 35 NLQYMFLCLN-ECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 35 ~~k~i~vtgg-v~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
+-|.++|||| --+||| .+.+.|-. +|++|..
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~-----~G~~v~~ 37 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACRE-----QGAELAF 37 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHH-----CCCEEEE
Confidence 3578999998 468999 99999988 8999864
No 323
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=37.57 E-value=35 Score=40.58 Aligned_cols=35 Identities=20% Similarity=0.123 Sum_probs=28.8
Q ss_pred CCCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEecc
Q 006689 33 PLNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGL 73 (635)
Q Consensus 33 ~~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~ 73 (635)
++..|-++|||| -++|| ++.+.|-+ +|++|...-.
T Consensus 411 ~l~gkvvLVTGa-sggIG~aiA~~La~-----~Ga~Vvi~~r 446 (676)
T TIGR02632 411 TLARRVAFVTGG-AGGIGRETARRLAA-----EGAHVVLADL 446 (676)
T ss_pred CCCCCEEEEeCC-CcHHHHHHHHHHHh-----CCCEEEEEeC
Confidence 345689999999 49999 99999989 8999987543
No 324
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=37.54 E-value=41 Score=32.96 Aligned_cols=31 Identities=6% Similarity=-0.062 Sum_probs=25.0
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+.|-|+|||| -++|| ++.+.|.. +|++|..+
T Consensus 4 ~~~~vlItG~-sg~iG~~l~~~l~~-----~G~~v~~~ 35 (248)
T PRK05557 4 EGKVALVTGA-SRGIGRAIAERLAA-----QGANVVIN 35 (248)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH-----CCCEEEEE
Confidence 3467899998 58899 88888888 89988654
No 325
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=37.53 E-value=1.2e+02 Score=34.29 Aligned_cols=33 Identities=15% Similarity=0.452 Sum_probs=25.4
Q ss_pred CCcEEEEe-eCCcccccC-cchHHHHHHHhhhhcC
Q 006689 173 PVDVCVIE-LGGTIGDIE-SMPFIEALGQFSYRVG 205 (635)
Q Consensus 173 ~~dv~i~E-iGGTvGdie-s~pf~ea~rq~~~~~g 205 (635)
+.-.+|+| +-|.-|++. +--|++++|++-.+.|
T Consensus 218 ~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g 252 (445)
T PRK09221 218 TIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHG 252 (445)
T ss_pred cEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcC
Confidence 45578899 666777764 4569999999999875
No 326
>PRK12939 short chain dehydrogenase; Provisional
Probab=37.42 E-value=43 Score=33.12 Aligned_cols=31 Identities=6% Similarity=0.005 Sum_probs=25.6
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+.|-|+|||| -|+|| .+.+.|.+ +|++|..+
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~-----~G~~v~~~ 37 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAE-----AGATVAFN 37 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHH-----cCCEEEEE
Confidence 3578999998 68999 99999988 88887664
No 327
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=37.39 E-value=1.8e+02 Score=33.22 Aligned_cols=133 Identities=17% Similarity=0.254 Sum_probs=87.2
Q ss_pred hcCCCcccEEEEeeCCCCChhhhccccccCCCCCCCeeeeCCCCCcchhhHHHHHhhhHHHHHHhcCCCCCCCccchHHH
Q 006689 239 RGQGLTPNILACRSTVALDDNVKGKLSQFCHVPEQNIITLYDVPNIWHIPLLLRDQKAHEAIFKVLNLQGTTKEPLLKEW 318 (635)
Q Consensus 239 rs~Gi~pd~iv~R~~~~l~~~~r~Kislfc~v~~~~Vi~i~dvdt~y~vpl~LreqG~~~~i~~~l~l~~~~~~~~l~~W 318 (635)
..-|.....-++|-+.-+..... -.||-+..++=.|+ .++. .|-..+.+--.|+.+.++..+.. .+....|
T Consensus 98 ~dpgy~~~lp~aR~Dvf~~~~~~---~kF~E~N~Dgssgm--~~~~-~l~~~~~~~~~~~~f~~~~~v~~---~~~~~~~ 168 (445)
T PF14403_consen 98 IDPGYDSPLPIARLDVFLTEDGS---FKFCEFNADGSSGM--NEDD-ELARIFLELPAMQEFAERYRVEP---LPLFQSW 168 (445)
T ss_pred CCCCCCCcCcceeeeEEEcCCCc---eEEEEecCCCcccc--chhH-HHHHHHHhhHHHHHHHhhcCccC---cchHHHH
Confidence 34455555566776665554322 56888887877777 5666 78888888888888888887752 3345566
Q ss_pred HH-HHHHh---cCCCCccEEEEEeccCCCc--chHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHH
Q 006689 319 TS-RAEIC---DGLHEPVRIAMVGKYTGLS--DAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWK 392 (635)
Q Consensus 319 ~~-lv~~~---~~~~~~v~IalVGkY~~l~--DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~ 392 (635)
-+ +...+ ....+..+|||| ||.... +-..-..+.++..|+++.+- +. +
T Consensus 169 vd~~l~~y~~~~~~~~~P~IAIv-Df~~~~~~~Ef~~f~~~f~~~G~~~vI~------d~-------------------~ 222 (445)
T PF14403_consen 169 VDALLDIYRTFGGRVEKPNIAIV-DFLEYPTLSEFEVFQRLFEEHGYDCVIC------DP-------------------R 222 (445)
T ss_pred HHHHHHHHHHhcCcCCCCcEEEE-ecccCCccchHHHHHHHHHHcCCceEec------Ch-------------------H
Confidence 43 33333 234456899999 676543 33556678899999998762 22 3
Q ss_pred hccCCCEEEECCCC
Q 006689 393 LLKGADGILVPGGF 406 (635)
Q Consensus 393 ~L~~~DGIllPGGf 406 (635)
.|.--||.+..||+
T Consensus 223 ~L~y~~g~L~~~~~ 236 (445)
T PF14403_consen 223 DLEYRDGRLYAGGR 236 (445)
T ss_pred HceecCCEEEECCE
Confidence 45556888888774
No 328
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=37.37 E-value=38 Score=33.79 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=28.1
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccC
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLD 74 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~D 74 (635)
.+-|-++|||| -++|| ++.+.|.. +|++|..+=.+
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~-----~G~~Vi~~~r~ 45 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYAR-----HGATVILLGRT 45 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHH-----CCCcEEEEeCC
Confidence 34688999998 68999 89988888 89888775444
No 329
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=37.25 E-value=1.6e+02 Score=29.41 Aligned_cols=33 Identities=24% Similarity=0.239 Sum_probs=21.4
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEE
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 431 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGI 431 (635)
.++|||++.+.. .+ .....++.+.+.++|+.-+
T Consensus 55 ~~vdgiii~~~~-~~---~~~~~~~~l~~~~iPvv~~ 87 (272)
T cd06301 55 QGVDAIIVVPVD-TA---ATAPIVKAANAAGIPLVYV 87 (272)
T ss_pred cCCCEEEEecCc-hh---hhHHHHHHHHHCCCeEEEe
Confidence 479999997632 11 1234567777889998754
No 330
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=37.21 E-value=42 Score=33.72 Aligned_cols=31 Identities=10% Similarity=0.071 Sum_probs=25.8
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
+..|.|+||||- |+|| ++.+.|-. +|++|..
T Consensus 9 l~~k~vlVtG~s-~gIG~~la~~l~~-----~G~~vv~ 40 (255)
T PRK06113 9 LDGKCAIITGAG-AGIGKEIAITFAT-----AGASVVV 40 (255)
T ss_pred cCCCEEEEECCC-chHHHHHHHHHHH-----CCCeEEE
Confidence 346899999975 9999 99998989 8988765
No 331
>PRK06500 short chain dehydrogenase; Provisional
Probab=37.20 E-value=43 Score=33.15 Aligned_cols=31 Identities=3% Similarity=-0.060 Sum_probs=25.4
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+.|.++||||- ++|| ++.+.|-. +|++|..+
T Consensus 5 ~~k~vlItGas-g~iG~~la~~l~~-----~g~~v~~~ 36 (249)
T PRK06500 5 QGKTALITGGT-SGIGLETARQFLA-----EGARVAIT 36 (249)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHH-----CCCEEEEe
Confidence 35789999985 8999 89988888 89887654
No 332
>PRK08309 short chain dehydrogenase; Provisional
Probab=37.17 E-value=36 Score=33.53 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=21.2
Q ss_pred EEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 39 MFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 39 i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
++||||- |+| ++.+.|.. +|++|...
T Consensus 3 vlVtGGt--G~gg~la~~L~~-----~G~~V~v~ 29 (177)
T PRK08309 3 ALVIGGT--GMLKRVSLWLCE-----KGFHVSVI 29 (177)
T ss_pred EEEECcC--HHHHHHHHHHHH-----CcCEEEEE
Confidence 7899994 666 88888888 89998864
No 333
>PRK06172 short chain dehydrogenase; Provisional
Probab=37.06 E-value=40 Score=33.69 Aligned_cols=31 Identities=10% Similarity=0.007 Sum_probs=25.9
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEec
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFG 72 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K 72 (635)
-|-|+|||| -|+|| ++.+.|-. +|++|..+-
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~-----~G~~v~~~~ 38 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFAR-----EGAKVVVAD 38 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHH-----cCCEEEEEe
Confidence 488999998 68999 89988888 899887643
No 334
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=37.00 E-value=41 Score=34.86 Aligned_cols=32 Identities=3% Similarity=-0.126 Sum_probs=27.1
Q ss_pred CCeEEEEccccc-cchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNEC-ACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~-s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+-|.++||||-- +||| ++.+.|-+ .|++|.+.
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~-----~G~~Vil~ 37 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFE-----QGAELAFT 37 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHH-----CCCEEEEE
Confidence 358999999975 7999 99999988 89988653
No 335
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=37.00 E-value=1.4e+02 Score=34.05 Aligned_cols=83 Identities=12% Similarity=0.062 Sum_probs=45.7
Q ss_pred ccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCC---------ccccCCChhhhhHHHHhccCCCEEE
Q 006689 331 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLE---------DATEKENPDAYKAAWKLLKGADGIL 401 (635)
Q Consensus 331 ~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le---------~~~~~~~p~~y~~a~~~L~~~DGIl 401 (635)
..||+++| .+... .|+.+.|...|+.+.+ .|..... .+..+.. ...|.. ..+.++|-|+
T Consensus 7 ~~kv~V~G-LG~sG---~a~a~~L~~~G~~v~v------~D~~~~~~~~~~~~~~~~~i~~~-~g~~~~-~~~~~~d~vV 74 (448)
T COG0771 7 GKKVLVLG-LGKSG---LAAARFLLKLGAEVTV------SDDRPAPEGLAAQPLLLEGIEVE-LGSHDD-EDLAEFDLVV 74 (448)
T ss_pred CCEEEEEe-ccccc---HHHHHHHHHCCCeEEE------EcCCCCccchhhhhhhccCceee-cCccch-hccccCCEEE
Confidence 46899998 55433 8999999999977655 2311111 0110000 000111 3456789999
Q ss_pred ECCCCCCCcchhHHHHHHHHHHcCCCEEE
Q 006689 402 VPGGFGNRGVQGKILAAKYAREHRIPYLG 430 (635)
Q Consensus 402 lPGGfG~rg~eg~i~air~are~~iP~LG 430 (635)
+++|.-.. ...++.|+..++|++|
T Consensus 75 ~SPGi~~~-----~p~v~~A~~~gi~i~~ 98 (448)
T COG0771 75 KSPGIPPT-----HPLVEAAKAAGIEIIG 98 (448)
T ss_pred ECCCCCCC-----CHHHHHHHHcCCcEEe
Confidence 99983221 1244555555666665
No 336
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.95 E-value=42 Score=33.15 Aligned_cols=30 Identities=10% Similarity=0.180 Sum_probs=25.6
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
-|-++|||| -++|| ++.+.|.+ +|++|...
T Consensus 5 ~~~~lItG~-~g~iG~~~a~~l~~-----~G~~vi~~ 35 (253)
T PRK08217 5 DKVIVITGG-AQGLGRAMAEYLAQ-----KGAKLALI 35 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHH-----CCCEEEEE
Confidence 467899998 69999 99999999 89988765
No 337
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=36.81 E-value=42 Score=33.98 Aligned_cols=33 Identities=6% Similarity=-0.032 Sum_probs=27.4
Q ss_pred CCCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 33 PLNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 33 ~~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
++..|-++||||- ++|| ++.+.|-. +|++|...
T Consensus 7 ~~~~k~~lItGa~-~~iG~~ia~~l~~-----~G~~vv~~ 40 (265)
T PRK07097 7 SLKGKIALITGAS-YGIGFAIAKAYAK-----AGATIVFN 40 (265)
T ss_pred CCCCCEEEEeCCC-chHHHHHHHHHHH-----CCCeEEEE
Confidence 4456889999987 8999 89998888 89988764
No 338
>PLN02253 xanthoxin dehydrogenase
Probab=36.69 E-value=44 Score=34.09 Aligned_cols=31 Identities=3% Similarity=-0.053 Sum_probs=26.2
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
..|.++||||- ++|| .+.+.|-. +|++|..+
T Consensus 17 ~~k~~lItGas-~gIG~~la~~l~~-----~G~~v~~~ 48 (280)
T PLN02253 17 LGKVALVTGGA-TGIGESIVRLFHK-----HGAKVCIV 48 (280)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHH-----cCCEEEEE
Confidence 45889999984 8999 89998888 89998875
No 339
>PRK06114 short chain dehydrogenase; Provisional
Probab=36.68 E-value=42 Score=33.74 Aligned_cols=32 Identities=25% Similarity=0.248 Sum_probs=25.9
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+.-|.++|||| -+||| ++.+.|.+ +|++|...
T Consensus 6 ~~~k~~lVtG~-s~gIG~~ia~~l~~-----~G~~v~~~ 38 (254)
T PRK06114 6 LDGQVAFVTGA-GSGIGQRIAIGLAQ-----AGADVALF 38 (254)
T ss_pred CCCCEEEEECC-CchHHHHHHHHHHH-----CCCEEEEE
Confidence 34589999987 58999 99999999 89887553
No 340
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=36.54 E-value=1.9e+02 Score=30.56 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=22.7
Q ss_pred CCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEe
Q 006689 397 ADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 432 (635)
Q Consensus 397 ~DGIllPGGfG~rg~eg~i~air~are~~iP~LGIC 432 (635)
+|.|+|.. |. ..-.|+++|+.-+||+.+||
T Consensus 157 Pd~l~ViD----p~--~e~iAv~EA~klgIPVvAlv 186 (252)
T COG0052 157 PDVLFVID----PR--KEKIAVKEANKLGIPVVALV 186 (252)
T ss_pred CCEEEEeC----Cc--HhHHHHHHHHHcCCCEEEEe
Confidence 67666654 22 23578999999999999998
No 341
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=36.41 E-value=44 Score=33.49 Aligned_cols=32 Identities=9% Similarity=0.060 Sum_probs=26.4
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+..|.++||||- ++|| ++.+.|-. .|++|...
T Consensus 7 l~~k~~lItGas-~giG~~ia~~L~~-----~G~~vvl~ 39 (254)
T PRK08085 7 LAGKNILITGSA-QGIGFLLATGLAE-----YGAEIIIN 39 (254)
T ss_pred CCCCEEEEECCC-ChHHHHHHHHHHH-----cCCEEEEE
Confidence 456889999976 8999 99998888 89988663
No 342
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=36.37 E-value=1.6e+02 Score=30.04 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=22.5
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEE
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 431 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGI 431 (635)
.++|||++.+...+ .....++.++++++|+..+
T Consensus 54 ~~vdgiii~~~~~~----~~~~~l~~l~~~~ipvV~~ 86 (288)
T cd01538 54 KGVDVLVIAPVDGE----ALASAVEKAADAGIPVIAY 86 (288)
T ss_pred cCCCEEEEecCChh----hHHHHHHHHHHCCCCEEEE
Confidence 48999999763222 1234567777889998765
No 343
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=36.31 E-value=42 Score=34.72 Aligned_cols=174 Identities=16% Similarity=0.201 Sum_probs=100.6
Q ss_pred CCeEEEEccccccchh------hHHHHHHhcCcCCCCceeEEeccCCccccCCCCCCccCcceEEEccCCccccCCCCcc
Q 006689 35 NLQYMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFGLDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNY 108 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K~DpYlN~d~gtmsp~eHGEvfV~~DG~E~DlDlG~Y 108 (635)
+||-+||||= =-++| .|...|+. +|++|.-.| |.|=|. +-...+=|.=.+
T Consensus 1 m~~~~fVtGT-DT~VGKTv~S~aL~~~l~~-----~g~~~~~~K-------------PVqsG~-----~~~~~~~D~~~l 56 (223)
T COG0132 1 MMKRFFVTGT-DTGVGKTVVSAALAQALKQ-----QGYSVAGYK-------------PVQTGS-----EETAENSDALVL 56 (223)
T ss_pred CCceEEEEeC-CCCccHHHHHHHHHHHHHh-----CCCeeEEEC-------------ceeeCC-----CCCCCCchHHHH
Confidence 3789999973 45667 56677888 999998766 666664 111114567778
Q ss_pred ccccCCCCCCCCcccchHhHHH----HHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEee-CC
Q 006689 109 ERFMDIKLTRDNNITTGKIYQS----VIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIEL-GG 183 (635)
Q Consensus 109 eRfl~~~l~~~~nittGkiy~~----vi~kEr~g~ylG~tvQviPHit~~i~~~i~~~~~~pvd~~~~~~dv~i~Ei-GG 183 (635)
.|+.++.++.+ .++--.|+. .|..++. |+++. .++|.++..+. ..++|.+|||= ||
T Consensus 57 ~~~~~~~~~~~--~~~py~f~~P~sPhlAa~~e----g~~I~-----~~~l~~~l~~l--------~~~~d~vlVEGAGG 117 (223)
T COG0132 57 QRLSGLDLSYE--LINPYRFKEPLSPHLAAELE----GRTID-----LEKLSQGLRQL--------LKKYDLVLVEGAGG 117 (223)
T ss_pred HHhcCCCcccc--cccceecCCCCCcHHHHhhc----CCccc-----HHHHHHHHHhh--------hcccCEEEEeCCCc
Confidence 88887776621 122222322 2222222 44422 23344444444 34889999994 44
Q ss_pred ccc-ccCcchHHHHHHHhhhhcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEEeeCCCCChhhhc
Q 006689 184 TIG-DIESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDDNVKG 262 (635)
Q Consensus 184 TvG-dies~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~KtKptQ~svk~Lrs~Gi~pd~iv~R~~~~l~~~~r~ 262 (635)
=-= =-|...|..=++|++..+ ++.++ +.+=-|+ =|=-|++.+|+.||..-++|.-+..+.+.....
T Consensus 118 l~vPl~~~~~~~D~~~~~~lpv----ILV~~-~~LGtIN--------HtlLt~eal~~~gl~l~G~I~n~~~~~~~~~~~ 184 (223)
T COG0132 118 LLVPLTEEYTFADLAVQLQLPV----ILVVG-IKLGTIN--------HTLLTVEALRARGLPLAGWVANGINPELDHYAE 184 (223)
T ss_pred eeeecCCcccHHHHHHHcCCCE----EEEec-CCccHHH--------HHHHHHHHHHHCCCCEEEEEEccCCCchhHHHH
Confidence 211 112367788888887542 11111 1111121 133467899999999999999888877665544
Q ss_pred cc
Q 006689 263 KL 264 (635)
Q Consensus 263 Ki 264 (635)
..
T Consensus 185 ~~ 186 (223)
T COG0132 185 IN 186 (223)
T ss_pred HH
Confidence 43
No 344
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=36.27 E-value=1.8e+02 Score=29.11 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=21.6
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEE
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 431 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGI 431 (635)
.++|||++.+. +. +.....++.+++.++|+.-+
T Consensus 56 ~~~dgiIi~~~--~~--~~~~~~i~~~~~~~ipvv~~ 88 (271)
T cd06321 56 AKVDLILLNAV--DS--KGIAPAVKRAQAAGIVVVAV 88 (271)
T ss_pred hCCCEEEEeCC--Ch--hHhHHHHHHHHHCCCeEEEe
Confidence 48999999652 21 12234567777788997666
No 345
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.13 E-value=82 Score=33.34 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=25.7
Q ss_pred CCCEEEECCCCCCCcchhHHHHHHHHHHc-CCCEEEEeh-h
Q 006689 396 GADGILVPGGFGNRGVQGKILAAKYAREH-RIPYLGICL-G 434 (635)
Q Consensus 396 ~~DGIllPGGfG~rg~eg~i~air~are~-~iP~LGICL-G 434 (635)
++|.+++-||=|+ ++.+++.+... ++|+|||=+ |
T Consensus 39 ~~D~vi~lGGDGT-----~L~a~~~~~~~~~~pilgIn~~G 74 (264)
T PRK03501 39 NANIIVSIGGDGT-----FLQAVRKTGFREDCLYAGISTKD 74 (264)
T ss_pred CccEEEEECCcHH-----HHHHHHHhcccCCCeEEeEecCC
Confidence 5699999998553 56777765443 789999998 6
No 346
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=35.96 E-value=3.8e+02 Score=25.34 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=26.7
Q ss_pred CCCCcEEEEeeCCcccccCcchHHHHHHHhhhhcCCCCE
Q 006689 171 EGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNF 209 (635)
Q Consensus 171 ~~~~dv~i~EiGGTvGdies~pf~ea~rq~~~~~g~~n~ 209 (635)
..+.|++||+..|...- ....++.++|+..-.-.+.+
T Consensus 80 ~~~~d~viiDt~g~~~~--~~~~l~~l~~l~~~~~~~~~ 116 (173)
T cd03115 80 EENFDVVIVDTAGRLQI--DENLMEELKKIKRVVKPDEV 116 (173)
T ss_pred hCCCCEEEEECcccchh--hHHHHHHHHHHHhhcCCCeE
Confidence 34789999999998763 45778899998765433333
No 347
>PRK10818 cell division inhibitor MinD; Provisional
Probab=35.96 E-value=2.3e+02 Score=29.01 Aligned_cols=35 Identities=9% Similarity=-0.007 Sum_probs=27.2
Q ss_pred CeEEEEccccccchh------hHHHHHHhcCcCCCCceeEEeccCCc
Q 006689 36 LQYMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFGLDPY 76 (635)
Q Consensus 36 ~k~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K~DpY 76 (635)
+|-|-|++ -=.|+| .|+..|.. +|++|-.+-+||.
T Consensus 2 ~kviav~s-~KGGvGKTt~a~nlA~~la~-----~g~~vllvD~D~~ 42 (270)
T PRK10818 2 ARIIVVTS-GKGGVGKTTSSAAIATGLAQ-----KGKKTVVIDFDIG 42 (270)
T ss_pred ceEEEEEe-CCCCCcHHHHHHHHHHHHHH-----CCCeEEEEECCCC
Confidence 46565553 345667 88898888 9999999999996
No 348
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=35.82 E-value=1.3e+02 Score=31.66 Aligned_cols=71 Identities=21% Similarity=0.290 Sum_probs=48.9
Q ss_pred eccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcchhHHHH
Q 006689 338 GKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILA 417 (635)
Q Consensus 338 GkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~eg~i~a 417 (635)
|||. +..-+.++++.+|+++. .+.+..++..+-. ....|+.+..-+-.++|+=-|-+..+..+..
T Consensus 17 gky~----s~~~~~~ai~aSg~~iv-Tva~rR~~~~~~~----------~~~~~~~i~~~~~~~lpNTaG~~ta~eAv~~ 81 (248)
T cd04728 17 GKYP----SPAIMKEAIEASGAEIV-TVALRRVNIGDPG----------GESFLDLLDKSGYTLLPNTAGCRTAEEAVRT 81 (248)
T ss_pred CCCC----CHHHHHHHHHHhCCCEE-EEEEEecccCCCC----------cchHHhhccccCCEECCCCCCCCCHHHHHHH
Confidence 5676 55677899999999974 4567777642211 1235666665556789997777777777777
Q ss_pred HHHHHH
Q 006689 418 AKYARE 423 (635)
Q Consensus 418 ir~are 423 (635)
++.|||
T Consensus 82 a~lare 87 (248)
T cd04728 82 ARLARE 87 (248)
T ss_pred HHHHHH
Confidence 777777
No 349
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=35.76 E-value=43 Score=34.08 Aligned_cols=31 Identities=3% Similarity=0.044 Sum_probs=26.0
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+.|.++||||- ++|| ++.+.|-. +|++|..+
T Consensus 9 ~~k~vlVtGas-~giG~~ia~~l~~-----~G~~V~~~ 40 (278)
T PRK08277 9 KGKVAVITGGG-GVLGGAMAKELAR-----AGAKVAIL 40 (278)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHH-----CCCEEEEE
Confidence 35889999995 8999 99999988 89988764
No 350
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=35.76 E-value=45 Score=33.73 Aligned_cols=32 Identities=3% Similarity=-0.174 Sum_probs=27.4
Q ss_pred CCeEEEEccccc-cchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNEC-ACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~-s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+-|-++||||-- +||| ++.+.|-. +|++|.+.
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~-----~G~~Vi~~ 39 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKD-----QGATVIYT 39 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHH-----CCCEEEEe
Confidence 458999999986 7999 99999988 89998763
No 351
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=35.75 E-value=37 Score=37.14 Aligned_cols=62 Identities=24% Similarity=0.348 Sum_probs=43.3
Q ss_pred cchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcchhHHHHHHHHHH
Q 006689 344 SDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILAAKYARE 423 (635)
Q Consensus 344 ~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~eg~i~air~are 423 (635)
+++.+-+.+.|..+|++-.. +...++. +.+..+|.|+=.||-|+ ++.|+-..+.
T Consensus 74 kn~~~~~~~~l~k~gieskl------v~R~~ls---------------q~i~waD~VisvGGDGT-----fL~Aasrv~~ 127 (395)
T KOG4180|consen 74 KNAIKFCQEELSKAGIESKL------VSRNDLS---------------QPIRWADMVISVGGDGT-----FLLAASRVID 127 (395)
T ss_pred HHHHHHHHHHHhhCCcceee------eehhhcc---------------CcCchhhEEEEecCccc-----eeehhhhhhc
Confidence 44556678899999998543 2333332 23678899999998665 3445555778
Q ss_pred cCCCEEEE
Q 006689 424 HRIPYLGI 431 (635)
Q Consensus 424 ~~iP~LGI 431 (635)
.++|++||
T Consensus 128 ~~~PViGv 135 (395)
T KOG4180|consen 128 DSKPVIGV 135 (395)
T ss_pred cCCceeee
Confidence 89999998
No 352
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=35.70 E-value=1.6e+02 Score=29.26 Aligned_cols=83 Identities=18% Similarity=0.260 Sum_probs=44.7
Q ss_pred EEEEeccCCCcchHH-HHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhc--cCCCEEEECCCCCCCc
Q 006689 334 IAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNRG 410 (635)
Q Consensus 334 IalVGkY~~l~DaY~-SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIllPGGfG~rg 410 (635)
||+|-.. ..+.|. .+.+.++.++-+.+..+.+. .++.. +++...+..+.+ .++|||++.....+
T Consensus 1 I~vi~~~--~~~~~~~~~~~g~~~~a~~~g~~~~~~-~~~~~--------d~~~q~~~i~~~i~~~~d~Iiv~~~~~~-- 67 (257)
T PF13407_consen 1 IGVIVPS--MDNPFWQQVIKGAKAAAKELGYEVEIV-FDAQN--------DPEEQIEQIEQAISQGVDGIIVSPVDPD-- 67 (257)
T ss_dssp EEEEESS--SSSHHHHHHHHHHHHHHHHHTCEEEEE-EESTT--------THHHHHHHHHHHHHTTESEEEEESSSTT--
T ss_pred cEEEeCC--CCCHHHHHHHHHHHHHHHHcCCEEEEe-CCCCC--------CHHHHHHHHHHHHHhcCCEEEecCCCHH--
Confidence 5666322 333444 36666666655555543333 23221 122222222222 58999998874332
Q ss_pred chhHHHHHHHHHHcCCCEEEE
Q 006689 411 VQGKILAAKYAREHRIPYLGI 431 (635)
Q Consensus 411 ~eg~i~air~are~~iP~LGI 431 (635)
.....++.+.++++|+.-+
T Consensus 68 --~~~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 68 --SLAPFLEKAKAAGIPVVTV 86 (257)
T ss_dssp --TTHHHHHHHHHTTSEEEEE
T ss_pred --HHHHHHHHHhhcCceEEEE
Confidence 2346678888999999875
No 353
>PRK08264 short chain dehydrogenase; Validated
Probab=35.67 E-value=43 Score=33.03 Aligned_cols=34 Identities=12% Similarity=0.001 Sum_probs=28.0
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCc-eeEEeccC
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNT-HFNLFGLD 74 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~-~v~~~K~D 74 (635)
+.|-|+|||| -++|| ++...|.+ +|. +|...--+
T Consensus 5 ~~~~vlItGg-sg~iG~~la~~l~~-----~G~~~V~~~~r~ 40 (238)
T PRK08264 5 KGKVVLVTGA-NRGIGRAFVEQLLA-----RGAAKVYAAARD 40 (238)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH-----CCcccEEEEecC
Confidence 3578999998 78999 99999999 898 88776444
No 354
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=35.62 E-value=47 Score=32.73 Aligned_cols=34 Identities=6% Similarity=-0.144 Sum_probs=28.0
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccCC
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLDP 75 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~Dp 75 (635)
+|-++|||| -|+|| ++.+.|.. +|++|...-.|+
T Consensus 2 ~k~vlItG~-s~~iG~~la~~l~~-----~g~~vi~~~r~~ 36 (245)
T PRK12824 2 KKIALVTGA-KRGIGSAIARELLN-----DGYRVIATYFSG 36 (245)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHH-----cCCEEEEEeCCc
Confidence 467899997 89999 99999988 899888765544
No 355
>PRK07831 short chain dehydrogenase; Provisional
Probab=35.55 E-value=47 Score=33.53 Aligned_cols=32 Identities=3% Similarity=-0.074 Sum_probs=26.9
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+-|-++||||-=|||| ++.+.|.. +|++|...
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~-----~G~~V~~~ 48 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALE-----EGARVVIS 48 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHH-----cCCEEEEE
Confidence 3588999999756899 99999999 99998763
No 356
>PRK06701 short chain dehydrogenase; Provisional
Probab=35.55 E-value=44 Score=34.82 Aligned_cols=30 Identities=3% Similarity=0.077 Sum_probs=26.2
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
.|-|+|||| -++|| +++..|-+ +|++|.++
T Consensus 46 ~k~iLItGa-sggIG~~la~~l~~-----~G~~V~l~ 76 (290)
T PRK06701 46 GKVALITGG-DSGIGRAVAVLFAK-----EGADIAIV 76 (290)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHH-----CCCEEEEE
Confidence 478999997 78899 99999988 89998875
No 357
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=35.34 E-value=36 Score=34.38 Aligned_cols=28 Identities=7% Similarity=0.043 Sum_probs=24.3
Q ss_pred EEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 38 YMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 38 ~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
-++||||- +||| ++.+.|.. +|++|...
T Consensus 2 ~vlItGas-~gIG~aia~~l~~-----~G~~V~~~ 30 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLK-----KGARVVIS 30 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHH-----cCCEEEEE
Confidence 38999986 9999 99999999 99998764
No 358
>PRK12746 short chain dehydrogenase; Provisional
Probab=35.23 E-value=47 Score=33.15 Aligned_cols=29 Identities=7% Similarity=0.014 Sum_probs=24.3
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
.|-|+|||| -++|| .+.+.|-. +|++|.+
T Consensus 6 ~~~ilItGa-sg~iG~~la~~l~~-----~G~~v~i 35 (254)
T PRK12746 6 GKVALVTGA-SRGIGRAIAMRLAN-----DGALVAI 35 (254)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHH-----CCCEEEE
Confidence 478999998 59999 89988888 8888765
No 359
>PRK06841 short chain dehydrogenase; Provisional
Probab=34.96 E-value=52 Score=32.82 Aligned_cols=35 Identities=9% Similarity=0.071 Sum_probs=27.6
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccC
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLD 74 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~D 74 (635)
+.-|.++||||- ++|| .+.+.|.. +|++|...--+
T Consensus 13 ~~~k~vlItGas-~~IG~~la~~l~~-----~G~~Vi~~~r~ 48 (255)
T PRK06841 13 LSGKVAVVTGGA-SGIGHAIAELFAA-----KGARVALLDRS 48 (255)
T ss_pred CCCCEEEEECCC-ChHHHHHHHHHHH-----CCCEEEEEeCC
Confidence 345789999874 7899 89999999 99998876443
No 360
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=34.92 E-value=47 Score=33.00 Aligned_cols=31 Identities=10% Similarity=0.042 Sum_probs=26.0
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+.|-++|||| -++|| .+.+.|-. +|++|..+
T Consensus 3 ~~~~vlItG~-sg~iG~~la~~l~~-----~g~~v~~~ 34 (258)
T PRK12429 3 KGKVALVTGA-ASGIGLEIALALAK-----EGAKVVIA 34 (258)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHH-----CCCeEEEE
Confidence 4578999999 48999 88888888 89998774
No 361
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=34.84 E-value=50 Score=34.98 Aligned_cols=40 Identities=13% Similarity=-0.027 Sum_probs=31.2
Q ss_pred CeEEEEccccccchh------hHHHHHHhcCcCCCCceeEEeccCCc--cccCCCCC
Q 006689 36 LQYMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFGLDPY--LNTDAGTM 84 (635)
Q Consensus 36 ~k~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K~DpY--lN~d~gtm 84 (635)
||.|-|+|- |+-| .|...|+. +| +|..||.||- .. -+|+.
T Consensus 1 M~~i~i~G~--~gSGKTTLi~~Li~~L~~-----~G-~V~~IKhd~h~~~~-~~g~D 48 (274)
T PRK14493 1 MKVLSIVGY--KATGKTTLVERLVDRLSG-----RG-RVGTVKHMDTERLN-PDGTD 48 (274)
T ss_pred CcEEEEECC--CCCCHHHHHHHHHHHHHh-----CC-CEEEEEEcCCCcCC-CCCCC
Confidence 577888887 7888 78888999 99 9999999993 22 46643
No 362
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.64 E-value=1.1e+02 Score=34.61 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=45.6
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCcc----ccCCCh---hhhhHHHHhccCCCEEEECC
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDA----TEKENP---DAYKAAWKLLKGADGILVPG 404 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~----~~~~~p---~~y~~a~~~L~~~DGIllPG 404 (635)
.+|+|+| ++. +=.+..+.|...|+.+.+. |..+..+. ...... ...|. .+.+.++|-||+|+
T Consensus 9 ~~v~v~G-~G~---sG~~~~~~l~~~g~~v~~~------d~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~d~vV~Sp 77 (468)
T PRK04690 9 RRVALWG-WGR---EGRAAYRALRAHLPAQALT------LFCNAVEAREVGALADAALLVETEAS-AQRLAAFDVVVKSP 77 (468)
T ss_pred CEEEEEc-cch---hhHHHHHHHHHcCCEEEEE------cCCCcccchHHHHHhhcCEEEeCCCC-hHHccCCCEEEECC
Confidence 4799998 553 3378899999999886552 22111000 000000 00011 13356789999988
Q ss_pred CCCCCcchhHHHHHHHHHHcCCCEEE
Q 006689 405 GFGNRGVQGKILAAKYAREHRIPYLG 430 (635)
Q Consensus 405 GfG~rg~eg~i~air~are~~iP~LG 430 (635)
|--.. ...++.|++.++|+.+
T Consensus 78 gI~~~-----~p~~~~a~~~~i~i~~ 98 (468)
T PRK04690 78 GISPY-----RPEALAAAARGTPFIG 98 (468)
T ss_pred CCCCC-----CHHHHHHHHcCCcEEE
Confidence 74321 1245666677777776
No 363
>PRK06123 short chain dehydrogenase; Provisional
Probab=34.56 E-value=45 Score=33.09 Aligned_cols=29 Identities=14% Similarity=0.063 Sum_probs=23.8
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
.|.++|||| -|+|| .+.+.|.. +|++|.+
T Consensus 2 ~~~~lVtG~-~~~iG~~~a~~l~~-----~G~~vv~ 31 (248)
T PRK06123 2 RKVMIITGA-SRGIGAATALLAAE-----RGYAVCL 31 (248)
T ss_pred CCEEEEECC-CchHHHHHHHHHHH-----CCCeEEE
Confidence 378999998 69999 88888888 8887743
No 364
>PRK04148 hypothetical protein; Provisional
Probab=34.48 E-value=55 Score=31.31 Aligned_cols=85 Identities=20% Similarity=0.234 Sum_probs=60.7
Q ss_pred hHHHHHHhcCcCCCCceeEEeccCCccccCCCCCCccCcceEEEccCCccccCCCCccccccCCCCCCCCcccchHhHHH
Q 006689 51 FFSLFLVQNCQYHPNTHFNLFGLDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFMDIKLTRDNNITTGKIYQS 130 (635)
Q Consensus 51 s~g~ll~~~~~~~~g~~v~~~K~DpYlN~d~gtmsp~eHGEvfV~~DG~E~DlDlG~YeRfl~~~l~~~~nittGkiy~~ 130 (635)
+++..|.. .|+.|+.+-+||..--++ -+.|--+|.+|--+.|+++ |+ +.+| ||
T Consensus 30 ~vA~~L~~-----~G~~ViaIDi~~~aV~~a-----~~~~~~~v~dDlf~p~~~~--y~---~a~l----------iy-- 82 (134)
T PRK04148 30 KVAKKLKE-----SGFDVIVIDINEKAVEKA-----KKLGLNAFVDDLFNPNLEI--YK---NAKL----------IY-- 82 (134)
T ss_pred HHHHHHHH-----CCCEEEEEECCHHHHHHH-----HHhCCeEEECcCCCCCHHH--Hh---cCCE----------EE--
Confidence 68999999 999999999999842222 2346778888887765543 22 1111 22
Q ss_pred HHhhhhcCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCCcc
Q 006689 131 VIDKERKGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTI 185 (635)
Q Consensus 131 vi~kEr~g~ylG~tvQviPHit~~i~~~i~~~~~~pvd~~~~~~dv~i~EiGGTv 185 (635)
-+ --+-|+|.-|.++|+ .-++|++|.=+||-.
T Consensus 83 ---------------si--rpp~el~~~~~~la~------~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 83 ---------------SI--RPPRDLQPFILELAK------KINVPLIIKPLSGEE 114 (134)
T ss_pred ---------------Ee--CCCHHHHHHHHHHHH------HcCCCEEEEcCCCCC
Confidence 12 225799999999997 788999999999854
No 365
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=34.47 E-value=2e+02 Score=28.61 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=21.5
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEE
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 431 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGI 431 (635)
.++|||++.++ +. ......++.+.+.++|+..+
T Consensus 54 ~~vdgii~~~~--~~--~~~~~~i~~~~~~~ipvV~~ 86 (273)
T cd06305 54 QKVDAIIIQHG--RA--EVLKPWVKRALDAGIPVVAF 86 (273)
T ss_pred cCCCEEEEecC--Ch--hhhHHHHHHHHHcCCCEEEe
Confidence 48999999763 21 11234467777889997654
No 366
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.32 E-value=44 Score=33.19 Aligned_cols=29 Identities=3% Similarity=-0.006 Sum_probs=24.0
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
.|-|+|||| -|+|| .+.+.|.. .|++|..
T Consensus 5 ~k~ilItGa-s~gIG~~la~~l~~-----~G~~vv~ 34 (253)
T PRK08642 5 EQTVLVTGG-SRGLGAAIARAFAR-----EGARVVV 34 (253)
T ss_pred CCEEEEeCC-CCcHHHHHHHHHHH-----CCCeEEE
Confidence 378999998 69999 88888888 8888754
No 367
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=34.30 E-value=1.5e+02 Score=29.75 Aligned_cols=30 Identities=10% Similarity=0.101 Sum_probs=24.1
Q ss_pred CCccccCCccchhhhhhcCCCcccEEEEee
Q 006689 223 VGEQKTKPTQHSVRGLRGQGLTPNILACRS 252 (635)
Q Consensus 223 ~~e~KtKptQ~svk~Lrs~Gi~pd~iv~R~ 252 (635)
.+.....-++.+++.|+..|+.+.++|+-.
T Consensus 150 p~~~s~~~~~~~l~~l~~~~~~~~glVlN~ 179 (217)
T cd02035 150 PEKLPLYETERAITELALYGIPVDAVVVNR 179 (217)
T ss_pred CCccHHHHHHHHHHHHHHCCCCCCEEEEeC
Confidence 356666778889999999999999988853
No 368
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=34.27 E-value=47 Score=34.00 Aligned_cols=40 Identities=33% Similarity=0.462 Sum_probs=29.3
Q ss_pred ccCCCEEEECCCCCCC-cc-hhHHHHHHHHHHcCCCEEEEeh
Q 006689 394 LKGADGILVPGGFGNR-GV-QGKILAAKYAREHRIPYLGICL 433 (635)
Q Consensus 394 L~~~DGIllPGGfG~r-g~-eg~i~air~are~~iP~LGICL 433 (635)
+.+.|.|.++=|||+- |+ -|+.-|--.|...++|++|||-
T Consensus 56 ~~dld~iav~~GPGSFTGlRIG~~~AkgLA~~l~iplvgvss 97 (220)
T COG1214 56 LQDLDAIAVAKGPGSFTGLRIGVAFAKGLALALNIPLVGVSS 97 (220)
T ss_pred HHHCCEEEEccCCCcccchhhHHHHHHHHHHHcCCCEEEeCH
Confidence 3478999999999984 43 2444444466778999999994
No 369
>PLN02780 ketoreductase/ oxidoreductase
Probab=34.26 E-value=36 Score=36.28 Aligned_cols=32 Identities=13% Similarity=0.092 Sum_probs=27.4
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEecc
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGL 73 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~ 73 (635)
-|.++|||| -|||| ++++.|-. +|++|..+=.
T Consensus 53 g~~~lITGA-s~GIG~alA~~La~-----~G~~Vil~~R 85 (320)
T PLN02780 53 GSWALVTGP-TDGIGKGFAFQLAR-----KGLNLVLVAR 85 (320)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHH-----CCCCEEEEEC
Confidence 489999998 68999 99999999 9999887643
No 370
>PRK08628 short chain dehydrogenase; Provisional
Probab=34.20 E-value=50 Score=33.06 Aligned_cols=32 Identities=19% Similarity=0.155 Sum_probs=26.5
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+.-|.|+|||| -++|| ++.+.|-. +|++|..+
T Consensus 5 l~~~~ilItGa-sggiG~~la~~l~~-----~G~~v~~~ 37 (258)
T PRK08628 5 LKDKVVIVTGG-ASGIGAAISLRLAE-----EGAIPVIF 37 (258)
T ss_pred cCCCEEEEeCC-CChHHHHHHHHHHH-----cCCcEEEE
Confidence 44578999998 58999 88888888 89988775
No 371
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=34.16 E-value=48 Score=32.94 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=27.5
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccC
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLD 74 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~D 74 (635)
..|-++||||- |+|| ++...|-. +|++|...=-+
T Consensus 7 ~~k~vlItGas-~~iG~~la~~l~~-----~G~~v~~~~~~ 41 (252)
T PRK08220 7 SGKTVWVTGAA-QGIGYAVALAFVE-----AGAKVIGFDQA 41 (252)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHH-----CCCEEEEEecc
Confidence 45789999876 8999 88988888 89999887433
No 372
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=34.03 E-value=51 Score=33.52 Aligned_cols=32 Identities=6% Similarity=-0.086 Sum_probs=27.3
Q ss_pred CCeEEEEcccc-ccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNE-CACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv-~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+.|.++||||- -|||| ++.+.|-. +|++|...
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~-----~G~~v~~~ 38 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHA-----AGAELGIT 38 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHH-----CCCEEEEE
Confidence 45889999986 58999 99999999 99998663
No 373
>cd01826 acyloxyacyl_hydrolase_like Acyloxyacyl-hydrolase like subfamily of the SGNH-hydrolase family. Acyloxyacyl-hydrolase is a leukocyte-secreted enzyme that deacetylates bacterial lipopolysaccharides.
Probab=33.97 E-value=1e+02 Score=33.50 Aligned_cols=73 Identities=18% Similarity=0.270 Sum_probs=48.4
Q ss_pred cchHhHHHHHhhhhcCC-------CCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCCcccccCcc----
Q 006689 123 TTGKIYQSVIDKERKGD-------YLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESM---- 191 (635)
Q Consensus 123 ttGkiy~~vi~kEr~g~-------ylG~tvQviPHit~~i~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdies~---- 191 (635)
....+|....++-|--. +.|.|.+-.| .++..+..-| ....|++++|++|| .|+=+-
T Consensus 75 ~~~S~y~rl~~~n~c~hrd~qN~G~sGatSrdl~-------~~l~~Ll~n~---~~~~P~lVtI~lGg--ND~C~g~~d~ 142 (305)
T cd01826 75 FTDSLYLRLRERNRCNHRDYQNLGVNGASSRNLL-------SIIKSIARNR---TTDKPALVIYSMIG--NDVCNGPNDT 142 (305)
T ss_pred ccccHHHHHhhccccchhhHHHhccchhhhHHHH-------HHHHHhcccc---ccCCCeEEEEEecc--chhhcCCCcc
Confidence 34568999888766443 4666655544 4455543211 23569999999999 887431
Q ss_pred -----h------HHHHHHHhhhhcCCC
Q 006689 192 -----P------FIEALGQFSYRVGPG 207 (635)
Q Consensus 192 -----p------f~ea~rq~~~~~g~~ 207 (635)
| +.+++++||.++.++
T Consensus 143 ~~~tp~eefr~NL~~~L~~Lr~~lP~~ 169 (305)
T cd01826 143 INHTTPEEFYENVMEALKYLDTKLPNG 169 (305)
T ss_pred ccCcCHHHHHHHHHHHHHHHHhcCCCC
Confidence 2 788999999887653
No 374
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=33.93 E-value=1.5e+02 Score=31.47 Aligned_cols=73 Identities=19% Similarity=0.218 Sum_probs=51.2
Q ss_pred eccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcchhHHHH
Q 006689 338 GKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILA 417 (635)
Q Consensus 338 GkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~eg~i~a 417 (635)
|||. ++.-+.++|+.+|+++. .+-+..++....... ...|+.+..-+-.++|+=-|-+..+..+..
T Consensus 24 gky~----s~~~~~~ai~aSg~evv-TvalRR~~~~~~~~~---------~~~l~~i~~~~~~~LPNTaGc~tA~EAv~~ 89 (267)
T CHL00162 24 GKYK----SLKDAIQSIEASGCEIV-TVAIRRLNNNLLNDN---------SNLLNGLDWNKLWLLPNTAGCQTAEEAIRM 89 (267)
T ss_pred CCCC----CHHHHHHHHHHhCCcEE-EEEEEEeccCcCCCc---------chHHHhhchhccEECCcCcCCCCHHHHHHH
Confidence 5676 56678899999999974 456777764211110 125677765566889998888888888888
Q ss_pred HHHHHHc
Q 006689 418 AKYAREH 424 (635)
Q Consensus 418 ir~are~ 424 (635)
++.|||.
T Consensus 90 A~laRe~ 96 (267)
T CHL00162 90 AFLGREL 96 (267)
T ss_pred HHHHHHH
Confidence 8888873
No 375
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=33.91 E-value=51 Score=33.66 Aligned_cols=31 Identities=3% Similarity=-0.090 Sum_probs=26.4
Q ss_pred CCeEEEEccc-cccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 35 NLQYMFLCLN-ECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 35 ~~k~i~vtgg-v~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
+-|-++|||| --+||| ++++.|-. .|++|..
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~-----~G~~v~~ 37 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKR-----EGAELAF 37 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHH-----CCCeEEE
Confidence 3588999998 478999 99999988 8999864
No 376
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=33.65 E-value=80 Score=30.44 Aligned_cols=60 Identities=18% Similarity=0.175 Sum_probs=40.4
Q ss_pred CEEEECCCCCCCcc---hhH-HHHHHHHHHcCCCEEEEehh--------HHHHHHHHhcccccccCCCCCcc
Q 006689 398 DGILVPGGFGNRGV---QGK-ILAAKYAREHRIPYLGICLG--------MQVAVIEFARSVLNLRDANSTEF 457 (635)
Q Consensus 398 DGIllPGGfG~rg~---eg~-i~air~are~~iP~LGICLG--------mQllaie~GrnV~glkda~S~Ef 457 (635)
--||++=|..+.+. ... ..+++.+++.+++++.|+.| |+-++-+-|++.+.+.++++.+|
T Consensus 101 ~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~d~~~~~~ 172 (178)
T cd01451 101 LIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLPDLSADAI 172 (178)
T ss_pred EEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcCcCCHHHH
Confidence 35677777544332 222 56678888999999999987 56666667777777666655443
No 377
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=33.53 E-value=2.1e+02 Score=27.67 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=21.0
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEE
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 431 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGI 431 (635)
.++|||++.+.... . .. .++.+.++++|++.+
T Consensus 54 ~~~d~ii~~~~~~~--~--~~-~~~~l~~~~ip~v~~ 85 (264)
T cd01537 54 RGVDGIIIAPSDLT--A--PT-IVKLARKAGIPVVLV 85 (264)
T ss_pred cCCCEEEEecCCCc--c--hh-HHHHhhhcCCCEEEe
Confidence 37999999764321 1 11 467777788998765
No 378
>PLN02686 cinnamoyl-CoA reductase
Probab=33.48 E-value=45 Score=36.21 Aligned_cols=34 Identities=6% Similarity=-0.024 Sum_probs=26.6
Q ss_pred cCCCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 32 APLNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 32 ~~~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+.+++|-|+||||- +.|| .+.+.|.. +|++|..+
T Consensus 49 ~~~~~k~VLVTGat-GfIG~~lv~~L~~-----~G~~V~~~ 83 (367)
T PLN02686 49 ADAEARLVCVTGGV-SFLGLAIVDRLLR-----HGYSVRIA 83 (367)
T ss_pred cCCCCCEEEEECCc-hHHHHHHHHHHHH-----CCCEEEEE
Confidence 44567899999986 6788 77777777 89988753
No 379
>PRK08862 short chain dehydrogenase; Provisional
Probab=33.36 E-value=53 Score=32.99 Aligned_cols=31 Identities=6% Similarity=0.108 Sum_probs=26.5
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+.|.++||||- |||| ++.+.|-. +|++|...
T Consensus 4 ~~k~~lVtGas-~GIG~aia~~la~-----~G~~V~~~ 35 (227)
T PRK08862 4 KSSIILITSAG-SVLGRTISCHFAR-----LGATLILC 35 (227)
T ss_pred CCeEEEEECCc-cHHHHHHHHHHHH-----CCCEEEEE
Confidence 45889999986 6999 99999999 99998764
No 380
>PRK00208 thiG thiazole synthase; Reviewed
Probab=33.36 E-value=1.6e+02 Score=31.21 Aligned_cols=70 Identities=20% Similarity=0.252 Sum_probs=49.8
Q ss_pred eccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcchhHHHH
Q 006689 338 GKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILA 417 (635)
Q Consensus 338 GkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~eg~i~a 417 (635)
|||. ++.-+.++|+.+|+++. .+.+..++..+- ....|+.+..-.--++|+=-|-+..+..+..
T Consensus 18 gky~----s~~~~~~ai~asg~~iv-TvalrR~~~~~~-----------~~~~~~~i~~~~~~~lpNTaG~~ta~eAv~~ 81 (250)
T PRK00208 18 GKYP----SPQVMQEAIEASGAEIV-TVALRRVNLGQG-----------GDNLLDLLPPLGVTLLPNTAGCRTAEEAVRT 81 (250)
T ss_pred CCCC----CHHHHHHHHHHhCCCeE-EEEEEeecCCCC-----------cchHHhhccccCCEECCCCCCCCCHHHHHHH
Confidence 5776 55678899999999974 466777765331 1125666765556788997788777778888
Q ss_pred HHHHHH
Q 006689 418 AKYARE 423 (635)
Q Consensus 418 ir~are 423 (635)
++.|||
T Consensus 82 a~lare 87 (250)
T PRK00208 82 ARLARE 87 (250)
T ss_pred HHHHHH
Confidence 888887
No 381
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=33.33 E-value=1.2e+02 Score=33.95 Aligned_cols=82 Identities=21% Similarity=0.259 Sum_probs=0.0
Q ss_pred CCCCccEEEEEeccCCCcchHHH-HHHHHHHccccceeeeEEEEecCCCCCcccc----------CCChhhhhHHHHhcc
Q 006689 327 GLHEPVRIAMVGKYTGLSDAYLS-ILKALLHASVDLRKKLVIDWIPACDLEDATE----------KENPDAYKAAWKLLK 395 (635)
Q Consensus 327 ~~~~~v~IalVGkY~~l~DaY~S-I~~AL~~ag~~~~vkl~i~wi~s~~le~~~~----------~~~p~~y~~a~~~L~ 395 (635)
+..+..+|.++| .+... .| +.+.|...|+.+.. .|....+.... ..++ +.+.
T Consensus 3 ~~~~~~~v~viG-~G~sG---~s~~a~~L~~~G~~V~~------~D~~~~~~~~~l~~~gi~~~~~~~~-------~~~~ 65 (461)
T PRK00421 3 ELRRIKRIHFVG-IGGIG---MSGLAEVLLNLGYKVSG------SDLKESAVTQRLLELGAIIFIGHDA-------ENIK 65 (461)
T ss_pred CcCCCCEEEEEE-Echhh---HHHHHHHHHhCCCeEEE------ECCCCChHHHHHHHCCCEEeCCCCH-------HHCC
Q ss_pred CCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEE
Q 006689 396 GADGILVPGGFGNRGVQGKILAAKYAREHRIPYLG 430 (635)
Q Consensus 396 ~~DGIllPGGfG~rg~eg~i~air~are~~iP~LG 430 (635)
++|-|++|+| +......++.|++.++|+++
T Consensus 66 ~~d~vv~spg-----i~~~~~~~~~a~~~~i~i~~ 95 (461)
T PRK00421 66 DADVVVYSSA-----IPDDNPELVAARELGIPVVR 95 (461)
T ss_pred CCCEEEECCC-----CCCCCHHHHHHHHCCCcEEe
No 382
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=33.18 E-value=54 Score=32.48 Aligned_cols=30 Identities=7% Similarity=-0.001 Sum_probs=25.0
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
..|-|+|||| -|+|| ++.+-|.+ +|++|..
T Consensus 5 ~~~~vlitGa-sg~iG~~l~~~l~~-----~g~~v~~ 35 (252)
T PRK06077 5 KDKVVVVTGS-GRGIGRAIAVRLAK-----EGSLVVV 35 (252)
T ss_pred CCcEEEEeCC-CChHHHHHHHHHHH-----CCCEEEE
Confidence 3578999998 57899 89998888 9999865
No 383
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=32.99 E-value=54 Score=33.41 Aligned_cols=32 Identities=6% Similarity=-0.124 Sum_probs=27.2
Q ss_pred CCeEEEEccccc-cchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNEC-ACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~-s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
.-|.++||||-- +||| .+.+.|-. +|++|.+.
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~-----~G~~v~~~ 39 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHN-----AGAKLVFT 39 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHH-----CCCEEEEe
Confidence 348899999985 8999 99999999 99988653
No 384
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=32.89 E-value=49 Score=32.80 Aligned_cols=29 Identities=10% Similarity=0.066 Sum_probs=23.8
Q ss_pred eEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 37 QYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 37 k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
|-|+||||- ++|| ++.+.|-. +|++|.+.
T Consensus 2 ~~vlItGa~-g~lG~~l~~~l~~-----~g~~v~~~ 31 (255)
T TIGR01963 2 KTALVTGAA-SGIGLAIALALAA-----AGANVVVN 31 (255)
T ss_pred CEEEEcCCc-chHHHHHHHHHHH-----CCCEEEEE
Confidence 569999865 8899 88888878 89888775
No 385
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=32.82 E-value=53 Score=32.93 Aligned_cols=30 Identities=13% Similarity=0.000 Sum_probs=25.3
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
.-|-|+|||| -++|| ++.+.|-+ +|++|..
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~-----~G~~V~~ 39 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQ-----AGAEVIL 39 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHH-----cCCEEEE
Confidence 3478999998 58999 88888888 8998876
No 386
>PRK06139 short chain dehydrogenase; Provisional
Probab=32.70 E-value=48 Score=35.60 Aligned_cols=31 Identities=6% Similarity=-0.044 Sum_probs=26.7
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
..|.++|||| -|||| ++.+.|.. +|++|...
T Consensus 6 ~~k~vlITGA-s~GIG~aia~~la~-----~G~~Vvl~ 37 (330)
T PRK06139 6 HGAVVVITGA-SSGIGQATAEAFAR-----RGARLVLA 37 (330)
T ss_pred CCCEEEEcCC-CCHHHHHHHHHHHH-----CCCEEEEE
Confidence 4588999999 58999 99999999 99998764
No 387
>PRK12367 short chain dehydrogenase; Provisional
Probab=32.67 E-value=47 Score=33.97 Aligned_cols=34 Identities=0% Similarity=-0.141 Sum_probs=27.7
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccC
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLD 74 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~D 74 (635)
+.|.++||||- |||| .+.+.|.. +|++|..+--+
T Consensus 13 ~~k~~lITGas-~gIG~ala~~l~~-----~G~~Vi~~~r~ 47 (245)
T PRK12367 13 QGKRIGITGAS-GALGKALTKAFRA-----KGAKVIGLTHS 47 (245)
T ss_pred CCCEEEEEcCC-cHHHHHHHHHHHH-----CCCEEEEEECC
Confidence 45889999874 7999 89998988 99999876433
No 388
>PRK07775 short chain dehydrogenase; Provisional
Probab=32.57 E-value=51 Score=33.71 Aligned_cols=32 Identities=9% Similarity=-0.060 Sum_probs=25.6
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+..|-++|||| -++|| .+.+-|-+ +|++|...
T Consensus 8 ~~~~~vlVtGa-~g~iG~~la~~L~~-----~G~~V~~~ 40 (274)
T PRK07775 8 PDRRPALVAGA-SSGIGAATAIELAA-----AGFPVALG 40 (274)
T ss_pred CCCCEEEEECC-CchHHHHHHHHHHH-----CCCEEEEE
Confidence 44689999998 58999 88888888 89887643
No 389
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=32.52 E-value=53 Score=33.47 Aligned_cols=31 Identities=3% Similarity=-0.091 Sum_probs=25.9
Q ss_pred CCeEEEEccccc-cchh-hHHHHHHhcCcCCCCceeEE
Q 006689 35 NLQYMFLCLNEC-ACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 35 ~~k~i~vtggv~-s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
+-|.++||||-= +||| ++.+.|-. +|++|..
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~-----~G~~v~~ 39 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKK-----HGAELWF 39 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHH-----cCCEEEE
Confidence 458999999974 5899 99999988 8998865
No 390
>PRK01581 speE spermidine synthase; Validated
Probab=32.39 E-value=4.2e+02 Score=29.67 Aligned_cols=91 Identities=14% Similarity=0.217 Sum_probs=49.6
Q ss_pred CCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCCcccccCcchH-HHHHHHhhhhcCCCCEEEEeeee
Q 006689 138 GDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPF-IEALGQFSYRVGPGNFCLIHVSL 216 (635)
Q Consensus 138 g~ylG~tvQviPHit~~i~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdies~pf-~ea~rq~~~~~g~~n~~~ihv~~ 216 (635)
|.|-+..|++ |+.|+. +++.+. ...+|++|+.+--..+..-+.-| .|.+++++..+-++-++.+.. -
T Consensus 202 ~~~~DpRV~v--vi~Da~-~fL~~~--------~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs-~ 269 (374)
T PRK01581 202 SAFFDNRVNV--HVCDAK-EFLSSP--------SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS-N 269 (374)
T ss_pred ccCCCCceEE--EECcHH-HHHHhc--------CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec-C
Confidence 3444566777 888888 677653 34799999996433332111122 345555556676666665542 1
Q ss_pred eeeecCCCccccCCc-cchhhhhhcCCCcccE
Q 006689 217 VPVLNVVGEQKTKPT-QHSVRGLRGQGLTPNI 247 (635)
Q Consensus 217 vp~~~~~~e~KtKpt-Q~svk~Lrs~Gi~pd~ 247 (635)
-|. ..... ....+.|++.|.....
T Consensus 270 sp~-------~~~~~~~~i~~tL~~af~~v~~ 294 (374)
T PRK01581 270 SPA-------DAPLVYWSIGNTIEHAGLTVKS 294 (374)
T ss_pred Chh-------hhHHHHHHHHHHHHHhCCceEE
Confidence 111 11111 2245667777776553
No 391
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=32.32 E-value=56 Score=32.63 Aligned_cols=34 Identities=18% Similarity=0.113 Sum_probs=27.1
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEecc
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGL 73 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~ 73 (635)
++.|-++||||- ++|| .+.+.|-+ +|++|.++=.
T Consensus 5 ~~~~~vlItGas-g~iG~~la~~l~~-----~G~~v~~~~r 39 (262)
T PRK13394 5 LNGKTAVVTGAA-SGIGKEIALELAR-----AGAAVAIADL 39 (262)
T ss_pred CCCCEEEEECCC-ChHHHHHHHHHHH-----CCCeEEEEeC
Confidence 346889999986 7999 88888888 8998877533
No 392
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=32.28 E-value=1.8e+02 Score=29.21 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=21.9
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEE
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 431 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGI 431 (635)
.++|||++.+...+ .....++.+.+.++|+..+
T Consensus 54 ~~vdgiIi~~~~~~----~~~~~i~~~~~~~iPvV~~ 86 (273)
T cd06309 54 QGVDVIILAPVVET----GWDPVLKEAKAAGIPVILV 86 (273)
T ss_pred cCCCEEEEcCCccc----cchHHHHHHHHCCCCEEEE
Confidence 47999999763221 1123466777888998765
No 393
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=32.16 E-value=60 Score=35.49 Aligned_cols=102 Identities=19% Similarity=0.263 Sum_probs=58.7
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCC-C---CCcc-ccCCChhhhhHHHHhccCCCEEEECCCC
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPAC-D---LEDA-TEKENPDAYKAAWKLLKGADGILVPGGF 406 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~-~---le~~-~~~~~p~~y~~a~~~L~~~DGIllPGGf 406 (635)
+-+.++-++. +. ++.+.++.|..+.-........ |.... + +... ...-.+ +...+....+|-|++.+|.
T Consensus 13 ~~~ll~p~f~-l~-~fa~~ve~lr~An~~~~~~~~~-w~~~s~~g~~V~ss~G~~i~~---d~~~~~~~~~~~v~v~~g~ 86 (328)
T COG4977 13 FGFLLLPNFS-LM-AFASAVEPLRAANRLAGRSLYV-WSIVSADGGPVRSSSGLSIAP---DGGLEAAPPIDILPVCGGL 86 (328)
T ss_pred EEEEEeCCCc-hh-hhhhhHHHHHHhhhhccccccc-eEEeecCCCCcccCCCceEec---CCcccccCcceEEEEecCC
Confidence 4455554333 32 6778888888776443332111 44221 1 1100 000000 1112334458888887877
Q ss_pred CCCcc---hhHHHHHHHHHHcCCCEEEEehhHHHHH
Q 006689 407 GNRGV---QGKILAAKYAREHRIPYLGICLGMQVAV 439 (635)
Q Consensus 407 G~rg~---eg~i~air~are~~iP~LGICLGmQlla 439 (635)
+.... ......++.+...+.++-|||-|-=+|+
T Consensus 87 ~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA 122 (328)
T COG4977 87 GPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLA 122 (328)
T ss_pred CcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHH
Confidence 66532 4478889999899999999999999886
No 394
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=32.13 E-value=5.4e+02 Score=25.93 Aligned_cols=41 Identities=24% Similarity=-0.061 Sum_probs=23.8
Q ss_pred HHhccCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEE
Q 006689 391 WKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 431 (635)
Q Consensus 391 ~~~L~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGI 431 (635)
.+.+..+|.+++|...+.....+.-..+-+|...++|+++.
T Consensus 289 ~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~ 329 (394)
T cd03794 289 PELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLAS 329 (394)
T ss_pred HHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEe
Confidence 35678899999988544320111111233445578998775
No 395
>PRK06138 short chain dehydrogenase; Provisional
Probab=32.11 E-value=57 Score=32.33 Aligned_cols=31 Identities=3% Similarity=-0.076 Sum_probs=25.4
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+-|.|+|||| -++|| .|.+.|-+ +|.+|..+
T Consensus 4 ~~k~~lItG~-sg~iG~~la~~l~~-----~G~~v~~~ 35 (252)
T PRK06138 4 AGRVAIVTGA-GSGIGRATAKLFAR-----EGARVVVA 35 (252)
T ss_pred CCcEEEEeCC-CchHHHHHHHHHHH-----CCCeEEEe
Confidence 3578999999 48999 88888888 88888764
No 396
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=32.09 E-value=50 Score=34.89 Aligned_cols=29 Identities=7% Similarity=0.060 Sum_probs=24.6
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCC-ceeEE
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPN-THFNL 70 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g-~~v~~ 70 (635)
.|.++||||- |||| ++.+.|-. +| ++|..
T Consensus 3 ~k~vlITGas-~GIG~aia~~L~~-----~G~~~V~l 33 (314)
T TIGR01289 3 KPTVIITGAS-SGLGLYAAKALAA-----TGEWHVIM 33 (314)
T ss_pred CCEEEEECCC-ChHHHHHHHHHHH-----cCCCEEEE
Confidence 5789999986 8999 89998888 89 88854
No 397
>PLN02422 dephospho-CoA kinase
Probab=31.37 E-value=47 Score=34.43 Aligned_cols=28 Identities=7% Similarity=-0.073 Sum_probs=25.3
Q ss_pred CeEEEEccccccchhhHHHHHHhcCcCCCCcee
Q 006689 36 LQYMFLCLNECACINFFSLFLVQNCQYHPNTHF 68 (635)
Q Consensus 36 ~k~i~vtggv~s~lgs~g~ll~~~~~~~~g~~v 68 (635)
||.|.||||.-||=..++.+|+. .|+.|
T Consensus 1 M~~igltG~igsGKstv~~~l~~-----~g~~~ 28 (232)
T PLN02422 1 MRVVGLTGGIASGKSTVSNLFKS-----SGIPV 28 (232)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-----CCCeE
Confidence 57899999999988899999999 89877
No 398
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.26 E-value=46 Score=35.32 Aligned_cols=36 Identities=33% Similarity=0.409 Sum_probs=29.1
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEehhH
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 435 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGICLGm 435 (635)
.++|-+++-||=|+ ++.+++.+...++|+|||=+|.
T Consensus 41 ~~~d~vi~iGGDGT-----~L~aa~~~~~~~~PilgIn~G~ 76 (272)
T PRK02231 41 QRAQLAIVIGGDGN-----MLGRARVLAKYDIPLIGINRGN 76 (272)
T ss_pred cCCCEEEEECCcHH-----HHHHHHHhccCCCcEEEEeCCC
Confidence 46899999998553 6777887777789999999884
No 399
>PRK09134 short chain dehydrogenase; Provisional
Probab=31.26 E-value=50 Score=33.24 Aligned_cols=29 Identities=10% Similarity=-0.011 Sum_probs=23.9
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
.|-++||||- ++|| .+.+.|-. +|++|..
T Consensus 9 ~k~vlItGas-~giG~~la~~l~~-----~g~~v~~ 38 (258)
T PRK09134 9 PRAALVTGAA-RRIGRAIALDLAA-----HGFDVAV 38 (258)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHH-----CCCEEEE
Confidence 4789999985 9999 88888888 8887754
No 400
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.25 E-value=1.4e+02 Score=33.72 Aligned_cols=84 Identities=17% Similarity=0.135 Sum_probs=42.1
Q ss_pred ccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCC-hhhhhH--HHHhccCCCEEEECCCCC
Q 006689 331 PVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKEN-PDAYKA--AWKLLKGADGILVPGGFG 407 (635)
Q Consensus 331 ~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~-p~~y~~--a~~~L~~~DGIllPGGfG 407 (635)
..+|+|+| ++. +=.+..+.|. .|+++.+ .|...........- ...+.. ..+.+.++|-||+++|.-
T Consensus 6 ~~~v~v~G-~G~---sG~a~~~~L~-~g~~v~v------~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~ 74 (454)
T PRK01368 6 KQKIGVFG-LGK---TGISVYEELQ-NKYDVIV------YDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIP 74 (454)
T ss_pred CCEEEEEe-ecH---HHHHHHHHHh-CCCEEEE------ECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCC
Confidence 35899998 664 3377888888 4766543 23211100000000 000000 012356799999999854
Q ss_pred CCcchhHHHHHHHHHHcCCCEEE
Q 006689 408 NRGVQGKILAAKYAREHRIPYLG 430 (635)
Q Consensus 408 ~rg~eg~i~air~are~~iP~LG 430 (635)
... ..+++|+++++|+++
T Consensus 75 ~~~-----p~~~~a~~~gi~v~~ 92 (454)
T PRK01368 75 LTH-----EIVKIAKNFNIPITS 92 (454)
T ss_pred CCC-----HHHHHHHHCCCceec
Confidence 321 235555556666654
No 401
>PRK05875 short chain dehydrogenase; Provisional
Probab=30.93 E-value=60 Score=32.92 Aligned_cols=33 Identities=12% Similarity=0.051 Sum_probs=26.7
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEec
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFG 72 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K 72 (635)
|+.|-|+|||+- ++|| .+.+.|.+ +|++|...=
T Consensus 5 ~~~k~vlItGas-g~IG~~la~~l~~-----~G~~V~~~~ 38 (276)
T PRK05875 5 FQDRTYLVTGGG-SGIGKGVAAGLVA-----AGAAVMIVG 38 (276)
T ss_pred CCCCEEEEECCC-cHHHHHHHHHHHH-----CCCeEEEEe
Confidence 445788999865 8899 99999988 899887653
No 402
>PRK07074 short chain dehydrogenase; Provisional
Probab=30.85 E-value=57 Score=32.63 Aligned_cols=31 Identities=3% Similarity=-0.029 Sum_probs=25.5
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEec
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFG 72 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K 72 (635)
.|-|+|||| -|+|| ++...|.+ +|++|...=
T Consensus 2 ~k~ilItGa-t~~iG~~la~~L~~-----~g~~v~~~~ 33 (257)
T PRK07074 2 KRTALVTGA-AGGIGQALARRFLA-----AGDRVLALD 33 (257)
T ss_pred CCEEEEECC-cchHHHHHHHHHHH-----CCCEEEEEe
Confidence 467999998 56899 99998988 899888753
No 403
>PRK05872 short chain dehydrogenase; Provisional
Probab=30.55 E-value=58 Score=33.94 Aligned_cols=31 Identities=10% Similarity=-0.020 Sum_probs=26.9
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+.|.++||||- |||| .+...|.. +|++|...
T Consensus 8 ~gk~vlItGas-~gIG~~ia~~l~~-----~G~~V~~~ 39 (296)
T PRK05872 8 AGKVVVVTGAA-RGIGAELARRLHA-----RGAKLALV 39 (296)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHH-----CCCEEEEE
Confidence 45889999986 8999 99999999 99998775
No 404
>PRK07832 short chain dehydrogenase; Provisional
Probab=30.43 E-value=52 Score=33.52 Aligned_cols=29 Identities=17% Similarity=0.112 Sum_probs=24.2
Q ss_pred eEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 37 QYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 37 k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
|-++|||| -|||| .+...|.. +|++|..+
T Consensus 1 k~vlItGa-s~giG~~la~~la~-----~G~~vv~~ 30 (272)
T PRK07832 1 KRCFVTGA-ASGIGRATALRLAA-----QGAELFLT 30 (272)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHH-----CCCEEEEE
Confidence 34899999 58999 89999988 89988764
No 405
>PRK08251 short chain dehydrogenase; Provisional
Probab=30.35 E-value=58 Score=32.35 Aligned_cols=30 Identities=7% Similarity=0.015 Sum_probs=24.8
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
.|.++|||| -++|| ++.+.|-. +|++|...
T Consensus 2 ~k~vlItGa-s~giG~~la~~l~~-----~g~~v~~~ 32 (248)
T PRK08251 2 RQKILITGA-SSGLGAGMAREFAA-----KGRDLALC 32 (248)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHH-----cCCEEEEE
Confidence 467899998 58999 88888888 78888765
No 406
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=30.27 E-value=2.9e+02 Score=27.16 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=20.6
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEE
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 431 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGI 431 (635)
.++|||++.+...+ -..++.+.+.++|+..+
T Consensus 54 ~~vdgiii~~~~~~------~~~~~~~~~~~ipvv~~ 84 (268)
T cd01575 54 RRPAGLILTGLEHT------ERTRQLLRAAGIPVVEI 84 (268)
T ss_pred cCCCEEEEeCCCCC------HHHHHHHHhcCCCEEEE
Confidence 47999999774321 13455566678998865
No 407
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=30.22 E-value=2e+02 Score=29.44 Aligned_cols=77 Identities=22% Similarity=0.229 Sum_probs=47.3
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcc
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGV 411 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~ 411 (635)
-+|.+|| .-..+...|.++-+..|+.... =+|+.-. |+.... +....+|.|++.+=
T Consensus 68 ~~ILfVg---Tk~~~~~~v~k~A~~~g~~~v~---~RWlgG~-LTN~~~-----------~~~~~Pdliiv~dp------ 123 (204)
T PRK04020 68 EKILVVS---SRQYGQKPVQKFAEVVGAKAIT---GRFIPGT-LTNPSL-----------KGYIEPDVVVVTDP------ 123 (204)
T ss_pred CeEEEEe---CCHHHHHHHHHHHHHhCCeeec---CccCCCc-CcCcch-----------hccCCCCEEEEECC------
Confidence 4799997 2222445566655555554322 3687632 222111 12347899999872
Q ss_pred hhHHHHHHHHHHcCCCEEEEe
Q 006689 412 QGKILAAKYAREHRIPYLGIC 432 (635)
Q Consensus 412 eg~i~air~are~~iP~LGIC 432 (635)
.....|+++|..-+||+.|||
T Consensus 124 ~~~~~AI~EA~kl~IP~Iaiv 144 (204)
T PRK04020 124 RGDAQAVKEAIEVGIPVVALC 144 (204)
T ss_pred cccHHHHHHHHHhCCCEEEEE
Confidence 223678999999999999999
No 408
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=30.09 E-value=62 Score=29.91 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=13.0
Q ss_pred eEEEEccccccchh-hHHHHHHh
Q 006689 37 QYMFLCLNECACIN-FFSLFLVQ 58 (635)
Q Consensus 37 k~i~vtggv~s~lg-s~g~ll~~ 58 (635)
|.++||||- |+|| ++.+.|-.
T Consensus 1 k~~lItGa~-~giG~~~a~~l~~ 22 (167)
T PF00106_consen 1 KTVLITGAS-SGIGRALARALAR 22 (167)
T ss_dssp EEEEEETTT-SHHHHHHHHHHHH
T ss_pred CEEEEECCC-CHHHHHHHHHHHh
Confidence 456666665 6666 66666655
No 409
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=29.90 E-value=1e+02 Score=29.22 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=29.6
Q ss_pred CCCcEEEEeeCCcccccCc-----chHHHHHHHhhhhcCCCCEEEEeeeeeee
Q 006689 172 GPVDVCVIELGGTIGDIES-----MPFIEALGQFSYRVGPGNFCLIHVSLVPV 219 (635)
Q Consensus 172 ~~~dv~i~EiGGTvGdies-----~pf~ea~rq~~~~~g~~n~~~ihv~~vp~ 219 (635)
.+||+|||++|+ .|+.. .-|.+.++++-.++...+.-.|=+|.-|.
T Consensus 66 ~~~d~vii~~G~--ND~~~~~~~~~~~~~~~~~~i~~i~~~~~~vil~~~~~~ 116 (185)
T cd01832 66 LRPDLVTLLAGG--NDILRPGTDPDTYRADLEEAVRRLRAAGARVVVFTIPDP 116 (185)
T ss_pred cCCCEEEEeccc--cccccCCCCHHHHHHHHHHHHHHHHhCCCEEEEecCCCc
Confidence 489999999995 45533 23677777777777544544444554443
No 410
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=29.75 E-value=54 Score=31.47 Aligned_cols=61 Identities=23% Similarity=0.357 Sum_probs=33.4
Q ss_pred CCccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChh--hhhHHHHhccCCCEEEECCC
Q 006689 329 HEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPD--AYKAAWKLLKGADGILVPGG 405 (635)
Q Consensus 329 ~~~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~--~y~~a~~~L~~~DGIllPGG 405 (635)
.+..+|++||-+ .-+++.|+..+.++.+. |+.+.+....+. .-.++.+.+.++|.++++|-
T Consensus 9 ~~~~~V~~VG~f-------~P~~~~l~~~~~~v~v~---------d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs 71 (147)
T PF04016_consen 9 GPGDKVGMVGYF-------QPLVEKLKERGAEVRVF---------DLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS 71 (147)
T ss_dssp TTTSEEEEES---------HCCHHHHCCCCSEEEEE---------ESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH
T ss_pred cCCCEEEEEcCc-------HHHHHHHhcCCCCEEEE---------ECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee
Confidence 345799999832 33578888777666552 111111101000 01134567899999999993
No 411
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=29.70 E-value=3.5e+02 Score=27.03 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=25.7
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEe
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 432 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGIC 432 (635)
..+|.|++.+- ..-..++++|...+||+.|||
T Consensus 126 ~~Pdlviv~~~------~~~~~ai~Ea~~l~IP~I~i~ 157 (193)
T cd01425 126 RLPDLVIVLDP------RKEHQAIREASKLGIPVIAIV 157 (193)
T ss_pred cCCCEEEEeCC------ccchHHHHHHHHcCCCEEEEe
Confidence 47899999872 123678999999999999997
No 412
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=29.38 E-value=63 Score=29.93 Aligned_cols=69 Identities=20% Similarity=0.237 Sum_probs=36.3
Q ss_pred HHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhH-HHHhccCCCEEEECCCCCCCcchhHHHHHHHHHHcCC
Q 006689 348 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKA-AWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRI 426 (635)
Q Consensus 348 ~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~-a~~~L~~~DGIllPGGfG~rg~eg~i~air~are~~i 426 (635)
..+.+.|+..|+++.... + + .++. +.-.+ ..+.++++|-|+..||-|--..+-..++++.+.+..+
T Consensus 21 ~~l~~~l~~~G~~~~~~~-~--v-~Dd~---------~~I~~~l~~~~~~~dliittGG~g~g~~D~t~~~l~~~~~~~~ 87 (135)
T smart00852 21 PALAELLTELGIEVTRYV-I--V-PDDK---------EAIKEALREALERADLVITTGGTGPGPDDVTPEAVAEALGKEL 87 (135)
T ss_pred HHHHHHHHHCCCeEEEEE-E--e-CCCH---------HHHHHHHHHHHhCCCEEEEcCCCCCCCCcCcHHHHHHHhCCcC
Confidence 356677888998754321 1 1 1221 11111 2233467999999998663223334556655544345
Q ss_pred CEE
Q 006689 427 PYL 429 (635)
Q Consensus 427 P~L 429 (635)
|+.
T Consensus 88 ~~~ 90 (135)
T smart00852 88 PGF 90 (135)
T ss_pred CCh
Confidence 543
No 413
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=29.33 E-value=2.5e+02 Score=27.82 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=20.3
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEE
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYL 429 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~L 429 (635)
.++||||+.+...+ ...++.++++++|+.
T Consensus 54 ~~vdgiIi~~~~~~------~~~~~~l~~~~ipvV 82 (265)
T cd06299 54 QRVDGIIVVPHEQS------AEQLEDLLKRGIPVV 82 (265)
T ss_pred cCCCEEEEcCCCCC------hHHHHHHHhCCCCEE
Confidence 47999999874322 134677788889974
No 414
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.27 E-value=64 Score=33.26 Aligned_cols=32 Identities=3% Similarity=-0.189 Sum_probs=27.1
Q ss_pred CCeEEEEccccc-cchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNEC-ACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~-s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+-|-++||||-- +||| ++++.|-. +|++|.+.
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~-----~G~~V~l~ 42 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRA-----AGAELAFT 42 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHH-----CCCEEEEE
Confidence 348899999974 8999 99999999 89988663
No 415
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=29.14 E-value=36 Score=33.80 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=24.9
Q ss_pred CCEEEECCCCCCCcchhHHHHHHHHHHcCCC
Q 006689 397 ADGILVPGGFGNRGVQGKILAAKYAREHRIP 427 (635)
Q Consensus 397 ~DGIllPGGfG~rg~eg~i~air~are~~iP 427 (635)
+|.||..||-|-..-+-..+|++...++.+|
T Consensus 68 ~DvvlttGGTG~t~RDvTpEA~~~~~dKeip 98 (169)
T COG0521 68 VDVVLTTGGTGITPRDVTPEATRPLFDKEIP 98 (169)
T ss_pred CCEEEEcCCccCCCCcCCHHHHHHHHhccCC
Confidence 8999999986654444467888888899999
No 416
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=29.10 E-value=1.2e+02 Score=30.59 Aligned_cols=70 Identities=20% Similarity=0.155 Sum_probs=45.3
Q ss_pred chHhHHHHHhhhhcCCCCCC--eeEEcccchHHHHHHHHHHhcccCCCCCCCCcEEEEeeCCcc--------------cc
Q 006689 124 TGKIYQSVIDKERKGDYLGK--TVQVVPHITDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTI--------------GD 187 (635)
Q Consensus 124 tGkiy~~vi~kEr~g~ylG~--tvQviPHit~~i~~~i~~~~~~pvd~~~~~~dv~i~EiGGTv--------------Gd 187 (635)
+|..-.+.+++ .| +.|- ...+||.=-++|++.|++... ..++|++|+= |||- +|
T Consensus 24 ng~~L~~~L~~--~G-~~g~~v~~~iVpDd~~~I~~aL~~a~~------~~~~DlIITT-GGtg~g~rDvTpeAv~~l~~ 93 (193)
T PRK09417 24 GIPALEEWLAS--AL-TSPFEIETRLIPDEQDLIEQTLIELVD------EMGCDLVLTT-GGTGPARRDVTPEATLAVAD 93 (193)
T ss_pred hHHHHHHHHHH--cC-CCCceEEEEECCCCHHHHHHHHHHHhh------cCCCCEEEEC-CCCCCCCCCcHHHHHHHHhC
Confidence 45555555543 33 2232 227999999999999998863 3578998887 9984 44
Q ss_pred cCcchHHHHHHHhhhh
Q 006689 188 IESMPFIEALGQFSYR 203 (635)
Q Consensus 188 ies~pf~ea~rq~~~~ 203 (635)
-|=--|-||+|++.++
T Consensus 94 keipG~~e~~r~~s~~ 109 (193)
T PRK09417 94 KEMPGFGEQMRQISLK 109 (193)
T ss_pred CcCCcHHHHHHHHhcc
Confidence 4555566666666543
No 417
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=28.98 E-value=76 Score=34.19 Aligned_cols=62 Identities=31% Similarity=0.510 Sum_probs=39.5
Q ss_pred hhhhhHHHHhcc--CCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEE-------------ehhHHHHHHHHhccccc
Q 006689 384 PDAYKAAWKLLK--GADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI-------------CLGMQVAVIEFARSVLN 448 (635)
Q Consensus 384 p~~y~~a~~~L~--~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGI-------------CLGmQllaie~GrnV~g 448 (635)
++.+..+.+.|+ +.|++++-||.|+- .+. .+.+.+.++|+.|| |+|++-++-....-+-.
T Consensus 77 ~~~~~~~~~~l~~~~Id~Li~IGGdgs~--~~a---~~L~e~~~i~vigiPkTIDNDl~~td~s~GfdTA~~~~~~~i~~ 151 (301)
T TIGR02482 77 EEGRQKAVENLKKLGIEGLVVIGGDGSY--TGA---QKLYEEGGIPVIGLPGTIDNDIPGTDYTIGFDTALNTIIDAVDK 151 (301)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHH--HHH---HHHHHhhCCCEEeecccccCCCcCcccCcChhHHHHHHHHHHHH
Confidence 345666667664 89999999997752 111 12222256787775 99999987555444444
Q ss_pred cc
Q 006689 449 LR 450 (635)
Q Consensus 449 lk 450 (635)
+.
T Consensus 152 i~ 153 (301)
T TIGR02482 152 IR 153 (301)
T ss_pred HH
Confidence 43
No 418
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism]
Probab=28.97 E-value=33 Score=34.97 Aligned_cols=12 Identities=0% Similarity=-0.017 Sum_probs=11.3
Q ss_pred EEEccccccchh
Q 006689 39 MFLCLNECACIN 50 (635)
Q Consensus 39 i~vtggv~s~lg 50 (635)
|+++|-|+||||
T Consensus 87 i~i~G~V~SGlG 98 (214)
T COG1339 87 IVIEGEVVSGLG 98 (214)
T ss_pred eEEEEEEecccc
Confidence 899999999999
No 419
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.86 E-value=2.6e+02 Score=28.03 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=20.4
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEE
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYL 429 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~L 429 (635)
.++|||++.+.. . +.....++.+.+.++|+.
T Consensus 54 ~~~Dgiii~~~~--~--~~~~~~i~~~~~~~iPvV 84 (282)
T cd06318 54 RGVNVLIINPVD--P--EGLVPAVAAAKAAGVPVV 84 (282)
T ss_pred cCCCEEEEecCC--c--cchHHHHHHHHHCCCCEE
Confidence 589999997631 1 222345677778888864
No 420
>PRK05884 short chain dehydrogenase; Provisional
Probab=28.82 E-value=58 Score=32.42 Aligned_cols=27 Identities=4% Similarity=0.021 Sum_probs=23.0
Q ss_pred EEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 39 MFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 39 i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
++||||- ++|| ++.+.|-. +|++|..+
T Consensus 3 vlItGas-~giG~~ia~~l~~-----~g~~v~~~ 30 (223)
T PRK05884 3 VLVTGGD-TDLGRTIAEGFRN-----DGHKVTLV 30 (223)
T ss_pred EEEEeCC-chHHHHHHHHHHH-----CCCEEEEE
Confidence 7899875 8999 89999988 89998775
No 421
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=28.81 E-value=2.7e+02 Score=28.39 Aligned_cols=33 Identities=18% Similarity=0.029 Sum_probs=21.4
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEE
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 431 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGI 431 (635)
.++|||++.+. +. +.....++.+++.++|+.-+
T Consensus 55 ~~~dgiii~~~--~~--~~~~~~i~~~~~~~iPvV~~ 87 (294)
T cd06316 55 QKPDIIISIPV--DP--VSTAAAYKKVAEAGIKLVFM 87 (294)
T ss_pred hCCCEEEEcCC--Cc--hhhhHHHHHHHHcCCcEEEe
Confidence 58999999652 11 11234567777889998644
No 422
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=28.76 E-value=62 Score=33.83 Aligned_cols=34 Identities=15% Similarity=0.094 Sum_probs=27.1
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccCC
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLDP 75 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~Dp 75 (635)
.|.|+|||| -++|| .|.+.|.. +|++|...-.|+
T Consensus 5 ~k~vlVtG~-~G~IG~~l~~~L~~-----~G~~V~~~~r~~ 39 (325)
T PLN02989 5 GKVVCVTGA-SGYIASWIVKLLLF-----RGYTINATVRDP 39 (325)
T ss_pred CCEEEEECC-chHHHHHHHHHHHH-----CCCEEEEEEcCC
Confidence 578999997 47788 88888888 899987655554
No 423
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=28.57 E-value=62 Score=31.76 Aligned_cols=29 Identities=7% Similarity=-0.056 Sum_probs=24.2
Q ss_pred eEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 37 QYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 37 k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
|-++|||| -++|| .+.+.|-. +|++|..+
T Consensus 1 k~~lItG~-sg~iG~~la~~l~~-----~G~~v~~~ 30 (242)
T TIGR01829 1 RIALVTGG-MGGIGTAICQRLAK-----DGYRVAAN 30 (242)
T ss_pred CEEEEECC-CChHHHHHHHHHHH-----CCCEEEEE
Confidence 56899999 69999 88998888 89887663
No 424
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=28.32 E-value=66 Score=35.96 Aligned_cols=35 Identities=6% Similarity=0.072 Sum_probs=28.8
Q ss_pred CCCCeEEEEcccc--------------ccc-hh-hHHHHHHhcCcCCCCceeEEec
Q 006689 33 PLNLQYMFLCLNE--------------CAC-IN-FFSLFLVQNCQYHPNTHFNLFG 72 (635)
Q Consensus 33 ~~~~k~i~vtggv--------------~s~-lg-s~g~ll~~~~~~~~g~~v~~~K 72 (635)
+++-|-|+||||= -|| +| +|+..|.. +|.+|+.+-
T Consensus 185 ~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~-----~Ga~V~~v~ 235 (399)
T PRK05579 185 DLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAAR-----RGADVTLVS 235 (399)
T ss_pred ccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHH-----CCCEEEEeC
Confidence 3456889999993 366 78 99999999 999999864
No 425
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=28.16 E-value=71 Score=31.62 Aligned_cols=30 Identities=7% Similarity=-0.009 Sum_probs=24.6
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
.|-|+||||- ++|| .+.+.|-+ +|++|..+
T Consensus 3 ~~~ilItGas-~~iG~~la~~l~~-----~g~~v~~~ 33 (250)
T TIGR03206 3 DKTAIVTGGG-GGIGGATCRRFAE-----EGAKVAVF 33 (250)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHH-----CCCEEEEe
Confidence 5779999984 8999 88888888 88888764
No 426
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=28.13 E-value=3.5e+02 Score=26.31 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=23.4
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCC
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIP 427 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP 427 (635)
.++|-||.+||-|--..+-..++++...+..+|
T Consensus 62 ~~~DlVIttGGtg~g~~D~t~eal~~l~~~~l~ 94 (163)
T TIGR02667 62 PDVQVILITGGTGFTGRDVTPEALEPLFDKTVE 94 (163)
T ss_pred CCCCEEEECCCcCCCCCCCcHHHHHHHHCCcCC
Confidence 479999999986554444456677777666666
No 427
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=27.88 E-value=2.8e+02 Score=27.57 Aligned_cols=31 Identities=13% Similarity=0.375 Sum_probs=20.1
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEE
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 431 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGI 431 (635)
.++|||++.+..-+. . .++.+++.++|+.-+
T Consensus 54 ~~vdgiii~~~~~~~----~--~~~~~~~~~ipvV~~ 84 (264)
T cd06274 54 RQVDALIVAGSLPPD----D--PYYLCQKAGLPVVAL 84 (264)
T ss_pred cCCCEEEEcCCCCch----H--HHHHHHhcCCCEEEe
Confidence 589999998743211 1 155667788887554
No 428
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=27.84 E-value=69 Score=34.15 Aligned_cols=29 Identities=10% Similarity=0.057 Sum_probs=22.3
Q ss_pred eEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 37 QYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 37 k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+-|+|||| -+.|| .+.+.|.. +|++|..+
T Consensus 11 ~~vLVtG~-~GfIG~~l~~~L~~-----~G~~V~~~ 40 (353)
T PLN02896 11 GTYCVTGA-TGYIGSWLVKLLLQ-----RGYTVHAT 40 (353)
T ss_pred CEEEEECC-CcHHHHHHHHHHHH-----CCCEEEEE
Confidence 34999998 46788 67787877 79888764
No 429
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=27.73 E-value=3.4e+02 Score=26.69 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=22.1
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEe
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 432 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGIC 432 (635)
.++|||++.++.. .. ...++.++++++|++-+.
T Consensus 54 ~~vdgiii~~~~~--~~---~~~~~~~~~~~ipvV~~~ 86 (266)
T cd06282 54 QRVDGLILTVADA--AT---SPALDLLDAERVPYVLAY 86 (266)
T ss_pred cCCCEEEEecCCC--Cc---hHHHHHHhhCCCCEEEEe
Confidence 4799999966432 11 235677778899987663
No 430
>PRK06198 short chain dehydrogenase; Provisional
Probab=27.69 E-value=70 Score=32.01 Aligned_cols=32 Identities=3% Similarity=0.018 Sum_probs=25.5
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCce-eEEe
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTH-FNLF 71 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~-v~~~ 71 (635)
++-|.|+|||| .++|| .+.+.|-+ +|++ |..+
T Consensus 4 ~~~k~vlItGa-~g~iG~~la~~l~~-----~G~~~V~~~ 37 (260)
T PRK06198 4 LDGKVALVTGG-TQGLGAAIARAFAE-----RGAAGLVIC 37 (260)
T ss_pred CCCcEEEEeCC-CchHHHHHHHHHHH-----CCCCeEEEE
Confidence 34578999987 68999 89999988 8887 6654
No 431
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=27.69 E-value=1.2e+02 Score=30.12 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=43.4
Q ss_pred CCcceecccCCCCeEEEEccccccchh---hHHHHHHhcCcCCCCceeEEeccCCccccCCCCCCccCcceEEEccCCcc
Q 006689 24 KCPTFLLYAPLNLQYMFLCLNECACIN---FFSLFLVQNCQYHPNTHFNLFGLDPYLNTDAGTMSPFEHGEVFVLDDGGE 100 (635)
Q Consensus 24 ~~~~~~~~~~~~~k~i~vtggv~s~lg---s~g~ll~~~~~~~~g~~v~~~K~DpYlN~d~gtmsp~eHGEvfV~~DG~E 100 (635)
++|.-+ ++...+-|.++| ..|-| -+-++++. ..++.+|..++-|++.++|+-.+.... -+|..+.+|..
T Consensus 12 ~~~~~~--~~~~~~~i~~~G--~~gsGKTTli~~l~~~---~~~~~~v~v~~~~~~~~~D~~~~~~~~-~~~~~l~~gci 83 (207)
T TIGR00073 12 KNRERL--DKHGLVVLNFMS--SPGSGKTTLIEKLIDN---LKDEVKIAVIEGDVITKFDAERLRKYG-APAIQINTGKE 83 (207)
T ss_pred HHHHHh--hhcCcEEEEEEC--CCCCCHHHHHHHHHHH---HhcCCeEEEEECCCCCcccHHHHHHcC-CcEEEEcCCCc
Confidence 344444 445577777777 34555 56677765 124579999999998888877665322 25666666544
No 432
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=27.62 E-value=70 Score=33.15 Aligned_cols=30 Identities=3% Similarity=-0.271 Sum_probs=25.7
Q ss_pred CeEEEEccccccchh------hHHHHHHhcCcCCCCceeEEec
Q 006689 36 LQYMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFG 72 (635)
Q Consensus 36 ~k~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K 72 (635)
||.|.|+|- |+-| .|...|+. +|++|..+|
T Consensus 1 m~vi~ivG~--~gsGKTtl~~~l~~~L~~-----~G~~V~viK 36 (229)
T PRK14494 1 MRAIGVIGF--KDSGKTTLIEKILKNLKE-----RGYRVATAK 36 (229)
T ss_pred CeEEEEECC--CCChHHHHHHHHHHHHHh-----CCCeEEEEE
Confidence 678999997 8888 56677888 999999999
No 433
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.51 E-value=1.9e+02 Score=32.54 Aligned_cols=78 Identities=17% Similarity=0.159 Sum_probs=0.0
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHH-------------HhccCCCE
Q 006689 333 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAW-------------KLLKGADG 399 (635)
Q Consensus 333 ~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~-------------~~L~~~DG 399 (635)
+|+|+| ++... .++.+.|...|+.+.+. +.......+.....+. +.+.++|-
T Consensus 16 ~i~v~G-~G~sG---~a~a~~L~~~G~~V~~~-----------D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dl 80 (458)
T PRK01710 16 KVAVVG-IGVSN---IPLIKFLVKLGAKVTAF-----------DKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDV 80 (458)
T ss_pred eEEEEc-ccHHH---HHHHHHHHHCCCEEEEE-----------CCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCE
Q ss_pred EEECCCCCCCcchhHHHHHHHHHHcCCCEEE
Q 006689 400 ILVPGGFGNRGVQGKILAAKYAREHRIPYLG 430 (635)
Q Consensus 400 IllPGGfG~rg~eg~i~air~are~~iP~LG 430 (635)
|++|+| +......++.|++.++|+.+
T Consensus 81 VV~Spg-----i~~~~p~~~~a~~~~i~i~s 106 (458)
T PRK01710 81 IFKTPS-----MRIDSPELVKAKEEGAYITS 106 (458)
T ss_pred EEECCC-----CCCCchHHHHHHHcCCcEEe
No 434
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=27.38 E-value=3.2e+02 Score=30.28 Aligned_cols=103 Identities=29% Similarity=0.215 Sum_probs=58.7
Q ss_pred CccchHHHHHHHHHhcCCCCccEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHH
Q 006689 311 KEPLLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAA 390 (635)
Q Consensus 311 ~~~~l~~W~~lv~~~~~~~~~v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a 390 (635)
+.+++..|+.....+.......||.+- |-+----+-.||-+-|.|..-.+ +.++. -++|-|.+. .|
T Consensus 99 ~aadlky~es~ar~ia~~s~~~kivve-kstvpv~aaesi~~il~~n~~~i--~fqil-snpeflaeg----------ta 164 (481)
T KOG2666|consen 99 KAADLKYWESAARMIADVSVSDKIVVE-KSTVPVKAAESIEKILNHNSKGI--KFQIL-SNPEFLAEG----------TA 164 (481)
T ss_pred cccchhHHHHHHHHHHHhccCCeEEEe-eccccchHHHHHHHHHhcCCCCc--eeEec-cChHHhccc----------ch
Confidence 456899998877776655556788876 44322224567777776543222 21111 122333222 25
Q ss_pred HHhccCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCE
Q 006689 391 WKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPY 428 (635)
Q Consensus 391 ~~~L~~~DGIllPGGfG~rg~eg~i~air~are~~iP~ 428 (635)
.++|.++|-+++.| -..|.-...++++++..|+=+|.
T Consensus 165 ikdl~npdrvligg-~etpeg~~av~~l~~vyehwvp~ 201 (481)
T KOG2666|consen 165 IKDLFNPDRVLIGG-RETPEGFQAVQALKDVYEHWVPR 201 (481)
T ss_pred hhhhcCCceEEECC-CCChhHHHHHHHHHHHHHhhCcc
Confidence 67899999999877 23332223556666666665664
No 435
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=27.22 E-value=91 Score=30.85 Aligned_cols=103 Identities=21% Similarity=0.180 Sum_probs=63.6
Q ss_pred cCCCCCCeeEEcccchHHHHHHHHHHhcccCCCCCCCCcE--EEEeeCCcccccCcchHHHHHHHhhhhcCCCCEEEEee
Q 006689 137 KGDYLGKTVQVVPHITDEIQDWIERVAMIPVDGKEGPVDV--CVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHV 214 (635)
Q Consensus 137 ~g~ylG~tvQviPHit~~i~~~i~~~~~~pvd~~~~~~dv--~i~EiGGTvGdies~pf~ea~rq~~~~~g~~n~~~ihv 214 (635)
+|.|-|..+++=..+.+++.++|++..+ +.|. ++-.+||--|===+...+|.+|++ +. .+ +-.
T Consensus 54 ~G~~~~~~~~~g~~~~~~~~~~ir~~le--------~~d~~~i~~slgGGTGsG~~~~i~~~~~~~----~~--~~-~~~ 118 (192)
T smart00864 54 RGLGAGADPEVGREAAEESLDEIREELE--------GADGVFITAGMGGGTGTGAAPVIAEIAKEY----GI--LT-VAV 118 (192)
T ss_pred ccCCCCCChHHHHHHHHHHHHHHHHHhc--------CCCEEEEeccCCCCccccHHHHHHHHHHHc----CC--cE-EEE
Confidence 6788888888888889999999998863 2354 445788755554455566777743 32 22 445
Q ss_pred eeeeeecCCCccccCCccchhhhhhcCCCcccEEEEeeCCCCCh
Q 006689 215 SLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILACRSTVALDD 258 (635)
Q Consensus 215 ~~vp~~~~~~e~KtKptQ~svk~Lrs~Gi~pd~iv~R~~~~l~~ 258 (635)
...|.. .|-.++| ++|+..|+.+.=..|.+++=+-..|..
T Consensus 119 ~v~P~~---~e~~~~~-~Na~~~l~~l~~~~d~~i~~dN~~l~~ 158 (192)
T smart00864 119 VTKPFV---FEGVVRP-YNAELGLEELREHVDSLIVIDNDALLD 158 (192)
T ss_pred EEEeEe---ecchhHH-HHHHHHHHHHHHhCCEEEEEEhHHHHH
Confidence 667733 3333333 344444444444688888866554443
No 436
>PRK06181 short chain dehydrogenase; Provisional
Probab=27.18 E-value=67 Score=32.28 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=24.2
Q ss_pred eEEEEccccccchh-hHHHHHHhcCcCCCCceeEEec
Q 006689 37 QYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFG 72 (635)
Q Consensus 37 k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K 72 (635)
|.|+||||- ++|| ++...|.+ +|++|..+=
T Consensus 2 ~~vlVtGas-g~iG~~la~~l~~-----~g~~Vi~~~ 32 (263)
T PRK06181 2 KVVIITGAS-EGIGRALAVRLAR-----AGAQLVLAA 32 (263)
T ss_pred CEEEEecCC-cHHHHHHHHHHHH-----CCCEEEEEe
Confidence 568999875 7899 88888888 899988753
No 437
>PRK07791 short chain dehydrogenase; Provisional
Probab=27.17 E-value=74 Score=32.98 Aligned_cols=31 Identities=6% Similarity=-0.003 Sum_probs=25.9
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+-|.++||||- |||| ++...|-. .|.+|.+.
T Consensus 5 ~~k~~lITGas-~GIG~aia~~la~-----~G~~vii~ 36 (286)
T PRK07791 5 DGRVVIVTGAG-GGIGRAHALAFAA-----EGARVVVN 36 (286)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHH-----CCCEEEEe
Confidence 35889999984 8999 89988888 89988764
No 438
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=27.08 E-value=2.4e+02 Score=31.19 Aligned_cols=51 Identities=24% Similarity=0.223 Sum_probs=30.2
Q ss_pred cCCCEEEECCCCCCC-------c-----chhHHHHHHHHHHcCCCEEE---E-ehhHHHHHHHHhcc
Q 006689 395 KGADGILVPGGFGNR-------G-----VQGKILAAKYAREHRIPYLG---I-CLGMQVAVIEFARS 445 (635)
Q Consensus 395 ~~~DGIllPGGfG~r-------g-----~eg~i~air~are~~iP~LG---I-CLGmQllaie~Grn 445 (635)
..+|+|.|+=|||+- | ..-..+.++.++..++|++. | +-|.-+-++++|+.
T Consensus 170 aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd 236 (343)
T TIGR01305 170 SGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGAD 236 (343)
T ss_pred cCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCC
Confidence 589999998677662 1 12233444444445788773 3 34555666666654
No 439
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=27.00 E-value=53 Score=32.40 Aligned_cols=26 Identities=8% Similarity=-0.017 Sum_probs=21.6
Q ss_pred EEEccccccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 39 MFLCLNECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 39 i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
|+|||| -|+|| .+.+.|-+ +|++|..
T Consensus 1 vlItGa-s~giG~~~a~~l~~-----~G~~v~~ 27 (239)
T TIGR01831 1 VLVTGA-SRGIGRAIANRLAA-----DGFEICV 27 (239)
T ss_pred CEEeCC-CchHHHHHHHHHHH-----CCCEEEE
Confidence 578988 69999 99999988 8887754
No 440
>PRK09701 D-allose transporter subunit; Provisional
Probab=26.99 E-value=3.6e+02 Score=28.12 Aligned_cols=86 Identities=17% Similarity=0.139 Sum_probs=41.9
Q ss_pred cEEEEEeccCCCcchH-HHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhc--cCCCEEEECCCCCC
Q 006689 332 VRIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGN 408 (635)
Q Consensus 332 v~IalVGkY~~l~DaY-~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIllPGGfG~ 408 (635)
-+|+++-.. +.+.| ..+.++++.+.-+.+..+.+...+.++ +++...+.-+.+ .++|||++.+...+
T Consensus 25 ~~Igvi~~~--~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~--------~~~~~~~~i~~l~~~~vDgiIi~~~~~~ 94 (311)
T PRK09701 25 AEYAVVLKT--LSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEG--------DFQSQLQLFEDLSNKNYKGIAFAPLSSV 94 (311)
T ss_pred CeEEEEeCC--CCCHHHHHHHHHHHHHHHHcCCeEEEecCCCCC--------CHHHHHHHHHHHHHcCCCEEEEeCCChH
Confidence 378888532 44454 446666655544443332221112111 111111122222 47999999874221
Q ss_pred CcchhHHHHHHHHHHcCCCEEEE
Q 006689 409 RGVQGKILAAKYAREHRIPYLGI 431 (635)
Q Consensus 409 rg~eg~i~air~are~~iP~LGI 431 (635)
.....+..+.++++|+.-+
T Consensus 95 ----~~~~~l~~~~~~giPvV~~ 113 (311)
T PRK09701 95 ----NLVMPVARAWKKGIYLVNL 113 (311)
T ss_pred ----HHHHHHHHHHHCCCcEEEe
Confidence 1123356667788997655
No 441
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=26.92 E-value=3.3e+02 Score=28.77 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=46.6
Q ss_pred EEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcch
Q 006689 333 RIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQ 412 (635)
Q Consensus 333 ~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~e 412 (635)
+|.+||- -......|.+.-.+.|+.... =.|++-. |+... ...+..+|.|||.+ +.
T Consensus 73 ~Il~Vst---r~~~~~~V~k~A~~tg~~~i~---~Rw~pGt-lTN~~-----------~~~f~~P~llIV~D----p~-- 128 (249)
T PTZ00254 73 DVVVVSS---RPYGQRAVLKFAQYTGASAIA---GRFTPGT-FTNQI-----------QKKFMEPRLLIVTD----PR-- 128 (249)
T ss_pred cEEEEEc---CHHHHHHHHHHHHHhCCeEEC---CcccCCC-CCCcc-----------ccccCCCCEEEEeC----CC--
Confidence 5777861 122344566666666655422 2677632 22111 12356889999986 21
Q ss_pred hHHHHHHHHHHcCCCEEEEe
Q 006689 413 GKILAAKYAREHRIPYLGIC 432 (635)
Q Consensus 413 g~i~air~are~~iP~LGIC 432 (635)
.-..|+++|..-+||+.|||
T Consensus 129 ~d~qAI~EA~~lnIPvIal~ 148 (249)
T PTZ00254 129 TDHQAIREASYVNIPVIALC 148 (249)
T ss_pred cchHHHHHHHHhCCCEEEEe
Confidence 23578899999999999999
No 442
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=26.86 E-value=3.8e+02 Score=28.46 Aligned_cols=39 Identities=10% Similarity=-0.034 Sum_probs=31.2
Q ss_pred CCCeEEEEccccccchh------hHHHHHHhcCcCCCCceeEEeccCCccc
Q 006689 34 LNLQYMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFGLDPYLN 78 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K~DpYlN 78 (635)
.++|-|-|+|+ -.|.| .|+..|.. +|.+|-.+-.||..+
T Consensus 91 ~~~~vIav~~~-KGGvGkTT~a~nLA~~la~-----~g~~VlLvD~D~~~~ 135 (322)
T TIGR03815 91 ARGVVVAVIGG-RGGAGASTLAAALALAAAR-----HGLRTLLVDADPWGG 135 (322)
T ss_pred CCceEEEEEcC-CCCCcHHHHHHHHHHHHHh-----cCCCEEEEecCCCCC
Confidence 34788888763 46677 78888888 999999999999865
No 443
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=26.80 E-value=1.2e+02 Score=31.83 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=18.9
Q ss_pred ccCCCEEEECCCCCCCcc-hhHHHHHHHHHHcCCCEEEEe
Q 006689 394 LKGADGILVPGGFGNRGV-QGKILAAKYAREHRIPYLGIC 432 (635)
Q Consensus 394 L~~~DGIllPGGfG~rg~-eg~i~air~are~~iP~LGIC 432 (635)
..+.|+++++... .. ...-..++.+.+.++|++|..
T Consensus 182 ~~~~da~~~~~~~---~~~~~~~~i~~~~~~~~iPv~~~~ 218 (294)
T PF04392_consen 182 AEKVDALYLLPDN---LVDSNFEAILQLANEAKIPVFGSS 218 (294)
T ss_dssp CTT-SEEEE-S-H---HHHHTHHHHHHHCCCTT--EEESS
T ss_pred hccCCEEEEECCc---chHhHHHHHHHHHHhcCCCEEECC
Confidence 3678999998632 12 122224555667899999965
No 444
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=26.78 E-value=2.2e+02 Score=32.45 Aligned_cols=94 Identities=27% Similarity=0.508 Sum_probs=69.4
Q ss_pred CCccccCCCCccccccCCCCCCC---------------CcccchHhHHHHHhhhhcCCCCCCeeEEcccchHHHHHHHHH
Q 006689 97 DGGEVDLDLGNYERFMDIKLTRD---------------NNITTGKIYQSVIDKERKGDYLGKTVQVVPHITDEIQDWIER 161 (635)
Q Consensus 97 DG~E~DlDlG~YeRfl~~~l~~~---------------~nittGkiy~~vi~kEr~g~ylG~tvQviPHit~~i~~~i~~ 161 (635)
+-.|+-|||-|+=||=-.++.++ .----|+|-+..|+|||.+- .|--+||+.
T Consensus 118 ~~veVPlDlDHFG~yGpMRfPkeIt~C~G~CY~~GpPf~gCPR~RIHkRLidKEk~~~-------------~e~eeWikL 184 (505)
T PF10113_consen 118 ENVEVPLDLDHFGKYGPMRFPKEITHCGGDCYNEGPPFKGCPRGRIHKRLIDKEKEYL-------------EEFEEWIKL 184 (505)
T ss_pred HhcCCCcchhhhcccCCccCChHHhCCchhhhccCCCCCCCchHHHHHHHHHHHHhhh-------------hhHHHHHHH
Confidence 34688999999999987777664 22235789999999999864 467799999
Q ss_pred HhcccCCCCCCCCcEEEEeeCCcccccCcchHHHHH--HHhhhhcCCCCEEEEee
Q 006689 162 VAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEAL--GQFSYRVGPGNFCLIHV 214 (635)
Q Consensus 162 ~~~~pvd~~~~~~dv~i~EiGGTvGdies~pf~ea~--rq~~~~~g~~n~~~ihv 214 (635)
.+. .-|=++|..| |+--..|.=||. .++..+.|+.==..+||
T Consensus 185 sss---------V~VNl~~eQg--~e~HaApldE~~~Va~~Akk~gkGveaI~~v 228 (505)
T PF10113_consen 185 SSS---------VCVNLTEEQG--GEEHAAPLDEMEEVAELAKKYGKGVEAIMHV 228 (505)
T ss_pred hhh---------heEEeeeccC--CcccCCCHHHHHHHHHHHHHhCCCceEEEEe
Confidence 874 2455677777 676778887774 46777788776666665
No 445
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=26.73 E-value=5.8e+02 Score=24.56 Aligned_cols=89 Identities=16% Similarity=0.105 Sum_probs=49.4
Q ss_pred chHHHHHHHHHhcCCCCccEEEEEeccCCCcchHH---HHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHH
Q 006689 314 LLKEWTSRAEICDGLHEPVRIAMVGKYTGLSDAYL---SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAA 390 (635)
Q Consensus 314 ~l~~W~~lv~~~~~~~~~v~IalVGkY~~l~DaY~---SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a 390 (635)
+.+.|+++++.+.+. -+|-++| .+. ++. -+...|...|..+.. +.. ...
T Consensus 19 ~~~~l~~~~~~i~~a---~~I~i~G-~G~---S~~~A~~~~~~l~~~g~~~~~------~~~-~~~-------------- 70 (179)
T cd05005 19 DEEELDKLISAILNA---KRIFVYG-AGR---SGLVAKAFAMRLMHLGLNVYV------VGE-TTT-------------- 70 (179)
T ss_pred CHHHHHHHHHHHHhC---CeEEEEe-cCh---hHHHHHHHHHHHHhCCCeEEE------eCC-CCC--------------
Confidence 345667777777654 3788887 332 221 122334445554332 111 100
Q ss_pred HHhccCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEeh
Q 006689 391 WKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 433 (635)
Q Consensus 391 ~~~L~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGICL 433 (635)
..+..-|-+|+-.-.|. ....+.+++.|++++.|+++|+-
T Consensus 71 -~~~~~~D~vI~iS~sG~--t~~~i~~~~~ak~~g~~iI~IT~ 110 (179)
T cd05005 71 -PAIGPGDLLIAISGSGE--TSSVVNAAEKAKKAGAKVVLITS 110 (179)
T ss_pred -CCCCCCCEEEEEcCCCC--cHHHHHHHHHHHHCCCeEEEEEC
Confidence 12333455554332332 35578999999999999999974
No 446
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=26.61 E-value=4.1e+02 Score=27.16 Aligned_cols=85 Identities=22% Similarity=0.290 Sum_probs=42.5
Q ss_pred ccEEEEEeccCCCcchH-HHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhc--cCCCEEEECCCCC
Q 006689 331 PVRIAMVGKYTGLSDAY-LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFG 407 (635)
Q Consensus 331 ~v~IalVGkY~~l~DaY-~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIllPGGfG 407 (635)
..+|+++= ..+.|.| ..+++.++.+..+.+..+.+ .++.. +++.-....+.+ .++|||++.+.
T Consensus 26 ~~~I~vi~--~~~~~~f~~~~~~~i~~~~~~~G~~~~~--~~~~~--------d~~~~~~~~~~l~~~~~dgiii~~~-- 91 (295)
T PRK10653 26 KDTIALVV--STLNNPFFVSLKDGAQKEADKLGYNLVV--LDSQN--------NPAKELANVQDLTVRGTKILLINPT-- 91 (295)
T ss_pred CCeEEEEe--cCCCChHHHHHHHHHHHHHHHcCCeEEE--ecCCC--------CHHHHHHHHHHHHHcCCCEEEEcCC--
Confidence 45788773 3344443 44555555554444433222 22211 121122222222 47999999752
Q ss_pred CCcchhHHHHHHHHHHcCCCEEEE
Q 006689 408 NRGVQGKILAAKYAREHRIPYLGI 431 (635)
Q Consensus 408 ~rg~eg~i~air~are~~iP~LGI 431 (635)
+. ......++.+.+.++|+.-+
T Consensus 92 ~~--~~~~~~l~~~~~~~ipvV~~ 113 (295)
T PRK10653 92 DS--DAVGNAVKMANQANIPVITL 113 (295)
T ss_pred Ch--HHHHHHHHHHHHCCCCEEEE
Confidence 21 11224566777788997765
No 447
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=26.43 E-value=3.6e+02 Score=27.79 Aligned_cols=33 Identities=27% Similarity=0.193 Sum_probs=21.3
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEE
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 431 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGI 431 (635)
.++|||++.+. . .......++.+.++++|+.-+
T Consensus 55 ~~~DgiIi~~~-~---~~~~~~~~~~~~~~~iPvV~v 87 (298)
T cd06302 55 QGVDAIAVVPN-D---PDALEPVLKKAREAGIKVVTH 87 (298)
T ss_pred cCCCEEEEecC-C---HHHHHHHHHHHHHCCCeEEEE
Confidence 47999999752 1 222345567777788887543
No 448
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=26.40 E-value=1.1e+02 Score=26.52 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=18.3
Q ss_pred hHHHHHHhcCcCCCCceeEEeccCCc
Q 006689 51 FFSLFLVQNCQYHPNTHFNLFGLDPY 76 (635)
Q Consensus 51 s~g~ll~~~~~~~~g~~v~~~K~DpY 76 (635)
.++..|.. +|.+|-.+-.||.
T Consensus 19 ~la~~~~~-----~~~~vl~~d~d~~ 39 (104)
T cd02042 19 NLAAALAR-----RGKRVLLIDLDPQ 39 (104)
T ss_pred HHHHHHHh-----CCCcEEEEeCCCC
Confidence 67777777 8999999999998
No 449
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.34 E-value=83 Score=31.93 Aligned_cols=32 Identities=3% Similarity=-0.198 Sum_probs=27.0
Q ss_pred CCeEEEEccccc-cchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNEC-ACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~-s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+-|-++||||-= +||| .+.+.|-. +|++|.+.
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~-----~G~~v~l~ 42 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRA-----LGAELAVT 42 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHH-----cCCEEEEE
Confidence 348999999977 6999 99999988 89988764
No 450
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=26.31 E-value=85 Score=30.88 Aligned_cols=31 Identities=13% Similarity=0.043 Sum_probs=24.9
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
++.|-++||||- ++|| .+...|.. +|++|..
T Consensus 4 ~~~~~vlItGa~-g~iG~~la~~l~~-----~g~~v~~ 35 (245)
T PRK12936 4 LSGRKALVTGAS-GGIGEEIARLLHA-----QGAIVGL 35 (245)
T ss_pred CCCCEEEEECCC-ChHHHHHHHHHHH-----CCCEEEE
Confidence 345789999876 8999 88888888 8887765
No 451
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=26.25 E-value=4.6e+02 Score=27.88 Aligned_cols=86 Identities=19% Similarity=0.131 Sum_probs=45.6
Q ss_pred CccEEEEEeccCCCcch-HHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhc--cCCCEEEECCCC
Q 006689 330 EPVRIAMVGKYTGLSDA-YLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGF 406 (635)
Q Consensus 330 ~~v~IalVGkY~~l~Da-Y~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIllPGGf 406 (635)
+..+||++-. + +.+. +..+++.++++..+.+..+ .+.++.. +++.-.++.+.+ .++|||++.+..
T Consensus 24 ~~~~Ig~i~~-~-~~~~f~~~~~~gi~~~a~~~g~~l--~i~~~~~--------~~~~~~~~i~~l~~~~vDGiIi~~~~ 91 (330)
T PRK10355 24 KEVKIGMAID-D-LRLERWQKDRDIFVKKAESLGAKV--FVQSANG--------NEETQMSQIENMINRGVDVLVIIPYN 91 (330)
T ss_pred CCceEEEEec-C-CCchHHHHHHHHHHHHHHHcCCEE--EEECCCC--------CHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4678999863 2 3333 3445555555554444332 2233321 111112223333 489999997621
Q ss_pred CCCcchhHHHHHHHHHHcCCCEEEE
Q 006689 407 GNRGVQGKILAAKYAREHRIPYLGI 431 (635)
Q Consensus 407 G~rg~eg~i~air~are~~iP~LGI 431 (635)
. ......++.+.+.++|+.-+
T Consensus 92 ~----~~~~~~l~~~~~~~iPvV~i 112 (330)
T PRK10355 92 G----QVLSNVIKEAKQEGIKVLAY 112 (330)
T ss_pred h----hhHHHHHHHHHHCCCeEEEE
Confidence 1 11234567777888998876
No 452
>PRK06484 short chain dehydrogenase; Validated
Probab=26.24 E-value=63 Score=36.36 Aligned_cols=30 Identities=3% Similarity=-0.045 Sum_probs=26.9
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
-|.++|||| -+||| ++.+.|.. +|++|...
T Consensus 269 ~k~~lItGa-s~gIG~~~a~~l~~-----~G~~V~~~ 299 (520)
T PRK06484 269 PRVVAITGG-ARGIGRAVADRFAA-----AGDRLLII 299 (520)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHH-----CCCEEEEE
Confidence 489999999 68999 99999999 99999886
No 453
>PRK07069 short chain dehydrogenase; Validated
Probab=26.17 E-value=67 Score=31.79 Aligned_cols=27 Identities=7% Similarity=0.068 Sum_probs=22.8
Q ss_pred EEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 39 MFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 39 i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
|+|||| -|+|| .+...|-. +|++|...
T Consensus 2 ilVtG~-~~~iG~~~a~~l~~-----~G~~v~~~ 29 (251)
T PRK07069 2 AFITGA-AGGLGRAIARRMAE-----QGAKVFLT 29 (251)
T ss_pred EEEECC-CChHHHHHHHHHHH-----CCCEEEEE
Confidence 789998 49999 88888888 89988754
No 454
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=26.16 E-value=1.3e+02 Score=31.90 Aligned_cols=77 Identities=18% Similarity=0.117 Sum_probs=51.0
Q ss_pred HHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCC-----cchhHHHHHHHHHHcC
Q 006689 351 LKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNR-----GVQGKILAAKYAREHR 425 (635)
Q Consensus 351 ~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~r-----g~eg~i~air~are~~ 425 (635)
++..+..|++-...+++.|-+-.+. ......+.+++||++.||--.| ......++++....++
T Consensus 73 ~rife~~gv~~v~ildir~R~~a~~------------s~~~~~v~~a~gIfftGGDQ~ri~~~lkdTpl~~~ir~r~r~G 140 (293)
T COG4242 73 IRIFEMMGVEEVQILDIRNREDASS------------SDIVAKVENATGIFFTGGDQLRIIGSLKDTPLMAAIRQRVRRG 140 (293)
T ss_pred hhHHHHhccceeEEEeeecccccch------------HHHHHHHHhCceEEEecCcceeeeeeccCCHHHHHHHHHHhcC
Confidence 3456667776555566666542221 1234568899999999984333 2245677777766678
Q ss_pred CCEEEEehhHHHHH
Q 006689 426 IPYLGICLGMQVAV 439 (635)
Q Consensus 426 iP~LGICLGmQlla 439 (635)
+-+-|.-.|.-+|.
T Consensus 141 ~avgGTSAGAavM~ 154 (293)
T COG4242 141 IAVGGTSAGAAVMS 154 (293)
T ss_pred ceecccccchhhcC
Confidence 99999999988775
No 455
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.98 E-value=85 Score=31.01 Aligned_cols=34 Identities=3% Similarity=-0.113 Sum_probs=27.2
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEeccCC
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFGLDP 75 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K~Dp 75 (635)
-|-++||||- ++|| ++.+.|-. +|++|..+--+|
T Consensus 5 ~~~vlItGas-g~iG~~l~~~l~~-----~G~~V~~~~r~~ 39 (251)
T PRK07231 5 GKVAIVTGAS-SGIGEGIARRFAA-----EGARVVVTDRNE 39 (251)
T ss_pred CcEEEEECCC-ChHHHHHHHHHHH-----CCCEEEEEeCCH
Confidence 4678999875 8999 88988888 899988865544
No 456
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.94 E-value=3.8e+02 Score=26.67 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=21.1
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEE
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 431 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGI 431 (635)
.++|||++.+... + .....++.+.+.++|+.-+
T Consensus 54 ~~~dgiii~~~~~-~---~~~~~l~~~~~~~ipvV~~ 86 (277)
T cd06319 54 KGVSGIIISPTNS-S---AAVTLLKLAAQAKIPVVIA 86 (277)
T ss_pred cCCCEEEEcCCch-h---hhHHHHHHHHHCCCCEEEE
Confidence 5899999866321 1 1224566777788998643
No 457
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.89 E-value=2.3e+02 Score=32.34 Aligned_cols=82 Identities=13% Similarity=0.065 Sum_probs=45.7
Q ss_pred cEEEEEeccCCCcchHHHHHHHHHHccccceeeeEEEEecCC--CC---CccccCCChhhhhHHHHhccCCCEEEECCCC
Q 006689 332 VRIAMVGKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPAC--DL---EDATEKENPDAYKAAWKLLKGADGILVPGGF 406 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~--~l---e~~~~~~~p~~y~~a~~~L~~~DGIllPGGf 406 (635)
-+|+|+| ++.. =.+.++.|...|+.+.+ .|.. .+ +..... ........+.+.++|-||.++|.
T Consensus 13 ~~v~V~G-~G~s---G~aa~~~L~~~G~~v~~------~D~~~~~~~~l~~~g~~--~~~~~~~~~~l~~~D~VV~SpGi 80 (488)
T PRK03369 13 APVLVAG-AGVT---GRAVLAALTRFGARPTV------CDDDPDALRPHAERGVA--TVSTSDAVQQIADYALVVTSPGF 80 (488)
T ss_pred CeEEEEc-CCHH---HHHHHHHHHHCCCEEEE------EcCCHHHHHHHHhCCCE--EEcCcchHhHhhcCCEEEECCCC
Confidence 4789998 5543 36777888888877554 1211 01 000000 00000011345678999999874
Q ss_pred CCCcchhHHHHHHHHHHcCCCEEE
Q 006689 407 GNRGVQGKILAAKYAREHRIPYLG 430 (635)
Q Consensus 407 G~rg~eg~i~air~are~~iP~LG 430 (635)
... ...++.|+++++|++|
T Consensus 81 ~~~-----~p~~~~a~~~gi~v~~ 99 (488)
T PRK03369 81 RPT-----APVLAAAAAAGVPIWG 99 (488)
T ss_pred CCC-----CHHHHHHHHCCCcEee
Confidence 432 2347777788888886
No 458
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=25.68 E-value=3.4e+02 Score=28.75 Aligned_cols=79 Identities=20% Similarity=0.233 Sum_probs=42.9
Q ss_pred HHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHh--ccCCCEEEECC-CCCCCcchhHHHHHHHHHHc
Q 006689 348 LSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKL--LKGADGILVPG-GFGNRGVQGKILAAKYAREH 424 (635)
Q Consensus 348 ~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~--L~~~DGIllPG-GfG~rg~eg~i~air~are~ 424 (635)
..+++.-+..+.++.+.-++.--.+..+-.. +.+. .+++. ...+|||+++| ..|.+....++..+|.+..
T Consensus 128 ~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~----~~~~--~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~- 200 (254)
T PF03437_consen 128 GELLRYRKRLGADVKILADVHVKHSSPLATR----DLEE--AAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVP- 200 (254)
T ss_pred HHHHHHHHHcCCCeEEEeeechhhcccCCCC----CHHH--HHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCC-
Confidence 3455555555666555433333223333221 1111 12232 35799999999 4677666566666666554
Q ss_pred CCCEEEEehhH
Q 006689 425 RIPYLGICLGM 435 (635)
Q Consensus 425 ~iP~LGICLGm 435 (635)
+|+| |--|.
T Consensus 201 -~PVl-vGSGv 209 (254)
T PF03437_consen 201 -VPVL-VGSGV 209 (254)
T ss_pred -CCEE-EecCC
Confidence 8988 54444
No 459
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=25.67 E-value=4.1e+02 Score=25.90 Aligned_cols=72 Identities=21% Similarity=0.177 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhc--cCCCEEEECCCCCCCcchhHHHHHHHHHH
Q 006689 346 AYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLL--KGADGILVPGGFGNRGVQGKILAAKYARE 423 (635)
Q Consensus 346 aY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L--~~~DGIllPGGfG~rg~eg~i~air~are 423 (635)
.|..+.++++.+..+.+.++ .+.+... ++.....+.+.+ .++|||++.+... ...-..++++++
T Consensus 13 ~~~~~~~~~~~~a~~~g~~~--~~~~~~~--------~~~~~~~~~~~l~~~~vdgvi~~~~~~----~~~~~~~~~l~~ 78 (267)
T cd01536 13 FWQAMNKGAEAAAKELGVEL--IVLDAQN--------DVSKQIQQIEDLIAQGVDGIIISPVDS----AALTPALKKANA 78 (267)
T ss_pred HHHHHHHHHHHHHHhcCceE--EEECCCC--------CHHHHHHHHHHHHHcCCCEEEEeCCCc----hhHHHHHHHHHH
Confidence 34556666666655544443 3333321 111112222222 4899999876321 111234566667
Q ss_pred cCCCEEEE
Q 006689 424 HRIPYLGI 431 (635)
Q Consensus 424 ~~iP~LGI 431 (635)
.++|+..+
T Consensus 79 ~~ip~V~~ 86 (267)
T cd01536 79 AGIPVVTV 86 (267)
T ss_pred CCCcEEEe
Confidence 77887654
No 460
>PRK06949 short chain dehydrogenase; Provisional
Probab=25.61 E-value=83 Score=31.34 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=26.6
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+.-|.|+|||| -++|| .+.+.|.. +|++|...
T Consensus 7 ~~~k~ilItGa-sg~IG~~~a~~l~~-----~G~~Vi~~ 39 (258)
T PRK06949 7 LEGKVALVTGA-SSGLGARFAQVLAQ-----AGAKVVLA 39 (258)
T ss_pred CCCCEEEEECC-CcHHHHHHHHHHHH-----CCCEEEEE
Confidence 45689999995 57999 89999998 89988765
No 461
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=25.53 E-value=2.3e+02 Score=30.48 Aligned_cols=66 Identities=20% Similarity=0.294 Sum_probs=38.7
Q ss_pred CCcEEEEee-CCcccccC-cchHHHHHHHhhhhcCCCCEEEEeeeeeeeecCCCccccCCccchhhhhhcCCCcccEEEE
Q 006689 173 PVDVCVIEL-GGTIGDIE-SMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHSVRGLRGQGLTPNILAC 250 (635)
Q Consensus 173 ~~dv~i~Ei-GGTvGdie-s~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~KtKptQ~svk~Lrs~Gi~pd~iv~ 250 (635)
+.--+|+|- -|.-|.+. +.-|++++|++..+.| +++|-= .+. +|=-+|-+. . ..+..|+.||++++
T Consensus 177 ~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~g---illI~D----EV~-tG~gRtG~~--~--a~~~~gv~PDiv~~ 244 (339)
T PF00202_consen 177 EIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHG---ILLIAD----EVQ-TGFGRTGKF--F--ASEHYGVDPDIVTF 244 (339)
T ss_dssp GEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT----EEEEE----ETT-TTTTTTSSS--S--GHHHHTSSSSEEEE
T ss_pred cEEEEEEeccccccCccccccchhhehcccccccc---cceecc----ccc-ccccccCCc--c--ceecccccCccccc
Confidence 445789995 44446655 4569999999999975 444421 111 122233321 1 12447999999776
No 462
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=25.45 E-value=7.6e+02 Score=25.46 Aligned_cols=73 Identities=14% Similarity=0.129 Sum_probs=47.2
Q ss_pred ccEEEEEeccCCC---------cchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEE
Q 006689 331 PVRIAMVGKYTGL---------SDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGIL 401 (635)
Q Consensus 331 ~v~IalVGkY~~l---------~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIl 401 (635)
..+|+++--.++. ...+..+.+.|+.. +.+.- ++ +... +.-.++|.+|
T Consensus 146 ~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~------~~---l~~~-------------~IP~~~d~Lv 202 (271)
T PF09822_consen 146 KPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEE------LN---LANE-------------EIPDDADVLV 202 (271)
T ss_pred CceEEEEccccccccccccccCcchHHHHHHHHHhc-Cceee------cC---Cccc-------------ccCCCCCEEE
Confidence 4678887666666 34788889999988 76532 22 1100 1237889999
Q ss_pred ECCCCCCCcchhHHHHHHHHHHcCCC
Q 006689 402 VPGGFGNRGVQGKILAAKYAREHRIP 427 (635)
Q Consensus 402 lPGGfG~rg~eg~i~air~are~~iP 427 (635)
|.| |-.+=.+..+.+++...+++-+
T Consensus 203 i~~-P~~~ls~~e~~~l~~yl~~GG~ 227 (271)
T PF09822_consen 203 IAG-PKTDLSEEELYALDQYLMNGGK 227 (271)
T ss_pred EEC-CCCCCCHHHHHHHHHHHHcCCe
Confidence 988 4444456677888777666544
No 463
>PRK05650 short chain dehydrogenase; Provisional
Probab=25.45 E-value=74 Score=32.29 Aligned_cols=28 Identities=7% Similarity=0.046 Sum_probs=23.7
Q ss_pred EEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 38 YMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 38 ~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
-|+|||| -|+|| .+.+.|-+ +|++|...
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~-----~g~~V~~~ 30 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAR-----EGWRLALA 30 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHH-----CCCEEEEE
Confidence 4789998 78999 89998988 89998764
No 464
>PRK05855 short chain dehydrogenase; Validated
Probab=25.40 E-value=74 Score=35.75 Aligned_cols=31 Identities=6% Similarity=-0.074 Sum_probs=26.3
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
+.+.++|||| -|||| ++.+.|.. +|++|...
T Consensus 314 ~~~~~lv~G~-s~giG~~~a~~l~~-----~G~~v~~~ 345 (582)
T PRK05855 314 SGKLVVVTGA-GSGIGRETALAFAR-----EGAEVVAS 345 (582)
T ss_pred CCCEEEEECC-cCHHHHHHHHHHHH-----CCCEEEEE
Confidence 4577899999 79999 99999999 99988754
No 465
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=25.30 E-value=3.8e+02 Score=27.72 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=22.0
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEE
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 431 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGI 431 (635)
.++|||++.+. ++ .....+++.+++.++|+.-+
T Consensus 56 ~~vdgiii~~~--~~--~~~~~~~~~~~~~giPvV~~ 88 (303)
T cd01539 56 KGVDLLAVNLV--DP--TAAQTVINKAKQKNIPVIFF 88 (303)
T ss_pred cCCCEEEEecC--ch--hhHHHHHHHHHHCCCCEEEe
Confidence 58999999653 21 12235667777889997654
No 466
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=25.25 E-value=4.2e+02 Score=27.65 Aligned_cols=88 Identities=18% Similarity=0.185 Sum_probs=50.9
Q ss_pred cEEEEEeccCCCcchHH-HHHHHHHHccccceeeeEEEEecCCCCCccccCCChh-hhhHHHHh-ccCCCEEEECCCCCC
Q 006689 332 VRIAMVGKYTGLSDAYL-SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPD-AYKAAWKL-LKGADGILVPGGFGN 408 (635)
Q Consensus 332 v~IalVGkY~~l~DaY~-SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~-~y~~a~~~-L~~~DGIllPGGfG~ 408 (635)
.+|+++ +..+.+.|. .+.+.++.++-+..+...+.-.+++. ++. .-....+. ..++|||+|.+.
T Consensus 34 ~~i~~~--~~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~--------d~~~Q~~~i~~~ia~~~daIiv~~~--- 100 (322)
T COG1879 34 KTIGVV--VPTLGNPFFQAVRKGAEAAAKKLGVVVAVVIADAQN--------DVAKQIAQIEDLIAQGVDAIIINPV--- 100 (322)
T ss_pred ceEEEE--eccCCChHHHHHHHHHHHHHHHcCCcEEEEeccccc--------ChHHHHHHHHHHHHcCCCEEEEcCC---
Confidence 679988 334555665 46667777766665421222222211 110 00111222 379999999873
Q ss_pred CcchhHHHHHHHHHHcCCCEEEEeh
Q 006689 409 RGVQGKILAAKYAREHRIPYLGICL 433 (635)
Q Consensus 409 rg~eg~i~air~are~~iP~LGICL 433 (635)
.......+++.|.+.+||+.-+=.
T Consensus 101 -d~~~~~~~v~~a~~aGIpVv~~d~ 124 (322)
T COG1879 101 -DPDALTPAVKKAKAAGIPVVTVDS 124 (322)
T ss_pred -ChhhhHHHHHHHHHCCCcEEEEec
Confidence 234567889999999999876643
No 467
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.23 E-value=90 Score=31.70 Aligned_cols=31 Identities=6% Similarity=-0.079 Sum_probs=26.9
Q ss_pred CeEEEEcccc-ccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 36 LQYMFLCLNE-CACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 36 ~k~i~vtggv-~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
-|.++||||- -|||| .+++.|-. +|++|...
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~-----~G~~v~l~ 39 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQE-----QGAEVVLT 39 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHH-----CCCEEEEe
Confidence 4789999985 69999 99999999 99998764
No 468
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=25.18 E-value=2.7e+02 Score=29.40 Aligned_cols=71 Identities=21% Similarity=0.289 Sum_probs=50.6
Q ss_pred eccCCCcchHHHHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhhHHHHhccCCCEEEECCCCCCCcchhHHHH
Q 006689 338 GKYTGLSDAYLSILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYKAAWKLLKGADGILVPGGFGNRGVQGKILA 417 (635)
Q Consensus 338 GkY~~l~DaY~SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~~a~~~L~~~DGIllPGGfG~rg~eg~i~a 417 (635)
|||. +..-+.++++.+|.++. .+-+..++...-.. ...|+.+..-+--++|+=-|-+..+..+..
T Consensus 24 gky~----s~~~~~~av~asg~~iv-TvAlRR~~~~~~~~----------~~~l~~l~~~~~~~LPNTaGc~taeEAv~t 88 (262)
T COG2022 24 GKYP----SPAVLAEAVRASGSEIV-TVALRRVNATRPGG----------DGILDLLIPLGVTLLPNTAGCRTAEEAVRT 88 (262)
T ss_pred CCCC----CHHHHHHHHHhcCCceE-EEEEEeecccCCCc----------chHHHHhhhcCcEeCCCccccCCHHHHHHH
Confidence 5666 45677889999998864 45667775422111 125666666666799998888888888999
Q ss_pred HHHHHH
Q 006689 418 AKYARE 423 (635)
Q Consensus 418 ir~are 423 (635)
++.|||
T Consensus 89 ArlARE 94 (262)
T COG2022 89 ARLARE 94 (262)
T ss_pred HHHHHH
Confidence 999988
No 469
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=25.16 E-value=7.3e+02 Score=25.15 Aligned_cols=85 Identities=11% Similarity=0.195 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcccCCCCCCCCc-EEEEeeCCcccccCcchHHHHHHHhhhhcCCCCEEEEeeeeeeeecCCCccccCCcc
Q 006689 154 EIQDWIERVAMIPVDGKEGPVD-VCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLIHVSLVPVLNVVGEQKTKPTQ 232 (635)
Q Consensus 154 ~i~~~i~~~~~~pvd~~~~~~d-v~i~EiGGTvGdies~pf~ea~rq~~~~~g~~n~~~ihv~~vp~~~~~~e~KtKptQ 232 (635)
...++.+...+ .++| ++++.+.+- .-..-+.++.++|++..++ +|++. .|-.. +-
T Consensus 28 d~~~~a~~~~~-------~G~~~i~i~d~~~~--~~~~~~~~~~i~~i~~~~~-----------~pv~~-~GGI~---s~ 83 (243)
T cd04731 28 DPVELAKRYNE-------QGADELVFLDITAS--SEGRETMLDVVERVAEEVF-----------IPLTV-GGGIR---SL 83 (243)
T ss_pred CHHHHHHHHHH-------CCCCEEEEEcCCcc--cccCcccHHHHHHHHHhCC-----------CCEEE-eCCCC---CH
Confidence 34455555543 2344 677776541 1123568899999988753 67664 45555 33
Q ss_pred chhhhhhcCCCcccEEEEeeCCCCChhhhccc
Q 006689 233 HSVRGLRGQGLTPNILACRSTVALDDNVKGKL 264 (635)
Q Consensus 233 ~svk~Lrs~Gi~pd~iv~R~~~~l~~~~r~Ki 264 (635)
..++++.+.| +|.+++-+...-..++-.++
T Consensus 84 ~d~~~~l~~G--~~~v~ig~~~~~~p~~~~~i 113 (243)
T cd04731 84 EDARRLLRAG--ADKVSINSAAVENPELIREI 113 (243)
T ss_pred HHHHHHHHcC--CceEEECchhhhChHHHHHH
Confidence 4566666777 56666544333333444444
No 470
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=25.14 E-value=7.7e+02 Score=25.40 Aligned_cols=41 Identities=24% Similarity=0.020 Sum_probs=28.3
Q ss_pred HhccCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEehh
Q 006689 392 KLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLG 434 (635)
Q Consensus 392 ~~L~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGICLG 434 (635)
..+..-|.+|+-.-.|. .+..+.+++.|++++.|++.|+-.
T Consensus 171 ~~~~~~Dv~I~iS~sg~--~~~~~~~~~~ak~~ga~iI~IT~~ 211 (278)
T PRK11557 171 QALSPDDLLLAISYSGE--RRELNLAADEALRVGAKVLAITGF 211 (278)
T ss_pred HhCCCCCEEEEEcCCCC--CHHHHHHHHHHHHcCCCEEEEcCC
Confidence 34555565554432333 455789999999999999999853
No 471
>PRK07060 short chain dehydrogenase; Provisional
Probab=25.11 E-value=87 Score=30.85 Aligned_cols=33 Identities=9% Similarity=0.022 Sum_probs=26.2
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEec
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFG 72 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K 72 (635)
+..|.++||||- ++|| .+...|.+ +|++|..+=
T Consensus 7 ~~~~~~lItGa~-g~iG~~~a~~l~~-----~g~~V~~~~ 40 (245)
T PRK07060 7 FSGKSVLVTGAS-SGIGRACAVALAQ-----RGARVVAAA 40 (245)
T ss_pred cCCCEEEEeCCc-chHHHHHHHHHHH-----CCCEEEEEe
Confidence 345789999876 8899 88888888 899887653
No 472
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=25.11 E-value=78 Score=31.29 Aligned_cols=28 Identities=4% Similarity=-0.116 Sum_probs=24.5
Q ss_pred CeEEEEccccccchhhHHHHHHhcCcCCCCcee
Q 006689 36 LQYMFLCLNECACINFFSLFLVQNCQYHPNTHF 68 (635)
Q Consensus 36 ~k~i~vtggv~s~lgs~g~ll~~~~~~~~g~~v 68 (635)
|+-|.||||.-||=.+++.+|+. .|+.|
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-----~g~~~ 29 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-----LGAPV 29 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-----cCCEE
Confidence 57899999999988899999999 78754
No 473
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.06 E-value=3.9e+02 Score=26.69 Aligned_cols=33 Identities=9% Similarity=0.026 Sum_probs=21.9
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEE
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 431 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGI 431 (635)
.++|||++.+. ++ ......++.++++++|+.-+
T Consensus 59 ~~vDgiii~~~--~~--~~~~~~i~~~~~~gIpvV~~ 91 (274)
T cd06311 59 RKIDALVILPF--ES--APLTQPVAKAKKAGIFVVVV 91 (274)
T ss_pred cCCCEEEEeCC--Cc--hhhHHHHHHHHHCCCeEEEE
Confidence 47999999763 21 12234567778889998664
No 474
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=24.95 E-value=3.3e+02 Score=30.98 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=26.3
Q ss_pred HHhccCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEE
Q 006689 391 WKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYL 429 (635)
Q Consensus 391 ~~~L~~~DGIllPGGfG~rg~eg~i~air~are~~iP~L 429 (635)
.+.+.++|++++|- +|.-.....-..|+.||+.++|+|
T Consensus 138 ~~~l~~~~~vVLSD-Y~KG~L~~~q~~I~~ar~~~~pVL 175 (467)
T COG2870 138 KNALKSFDALVLSD-YAKGVLTNVQKMIDLAREAGIPVL 175 (467)
T ss_pred HHHhhcCCEEEEec-cccccchhHHHHHHHHHHcCCcEE
Confidence 34568999999997 333223334556777888899987
No 475
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=24.90 E-value=2e+02 Score=26.82 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHhcccCCCCCCCCcEEEEeeCCcccccCcchHHHHHHHhhhhcCC
Q 006689 152 TDEIQDWIERVAMIPVDGKEGPVDVCVIELGGTIGDIESMPFIEALGQFSYRVGP 206 (635)
Q Consensus 152 t~~i~~~i~~~~~~pvd~~~~~~dv~i~EiGGTvGdies~pf~ea~rq~~~~~g~ 206 (635)
|....+++.+... ....||+|+|++|+ .|.. +.+.++++...+++
T Consensus 34 ~~~~~~~l~~~~~-----~~~~~d~vvi~lGt--Nd~~---~~~nl~~ii~~~~~ 78 (150)
T cd01840 34 MSEAPDLIRQLKD-----SGKLRKTVVIGLGT--NGPF---TKDQLDELLDALGP 78 (150)
T ss_pred HHHHHHHHHHHHH-----cCCCCCeEEEEecC--CCCC---CHHHHHHHHHHcCC
Confidence 4455555555432 24579999999997 4653 57888888888875
No 476
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=24.66 E-value=4e+02 Score=26.75 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=20.5
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEE
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 431 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGI 431 (635)
.++|||++.+... +... .++.+++.++|+.-+
T Consensus 56 ~~vdgiI~~~~~~----~~~~-~~~~~~~~giPvV~~ 87 (268)
T cd06306 56 WGADAILLGAVSP----DGLN-EILQQVAASIPVIAL 87 (268)
T ss_pred cCCCEEEEcCCCh----hhHH-HHHHHHHCCCCEEEe
Confidence 5899999976321 1111 456677889997644
No 477
>PRK14132 riboflavin kinase; Provisional
Probab=24.61 E-value=34 Score=32.48 Aligned_cols=10 Identities=0% Similarity=-0.054 Sum_probs=6.8
Q ss_pred Eccccccchh
Q 006689 41 LCLNECACIN 50 (635)
Q Consensus 41 vtggv~s~lg 50 (635)
++|=|+||||
T Consensus 3 l~G~VvSGlG 12 (126)
T PRK14132 3 IFGRVVSGLG 12 (126)
T ss_pred EEEEEecccc
Confidence 5666777777
No 478
>PRK09913 putative fructose-like phosphotransferase system subunit EIIA; Provisional
Probab=24.38 E-value=31 Score=32.25 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=38.0
Q ss_pred CCCCccc---cccCCCCCCCCcccc-hHhHHHHHhhhhcCC-CCCCeeEEcccchHH
Q 006689 103 LDLGNYE---RFMDIKLTRDNNITT-GKIYQSVIDKERKGD-YLGKTVQVVPHITDE 154 (635)
Q Consensus 103 lDlG~Ye---Rfl~~~l~~~~nitt-Gkiy~~vi~kEr~g~-ylG~tvQviPHit~~ 154 (635)
++.-++| |++...|.+...+|. ..+++.+++||..|. ++|..| .+||...+
T Consensus 13 ~~~~~~~e~i~~l~~~l~~~g~v~~~~~~~~~~~~RE~~~~t~i~~~i-AiPH~~~~ 68 (148)
T PRK09913 13 IQGNGAYSILKQLATIALQNGFITDSHQFLQTLLLREKMHSTGFGSGV-AVPHGKSA 68 (148)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhCCCcCCCce-ecCcCCch
Confidence 3444556 566666666777774 689999999999886 567778 99998765
No 479
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=24.32 E-value=3.5e+02 Score=27.70 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=23.6
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEe
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 432 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGIC 432 (635)
.++|||++.+- + .+.....++.+++.++|+.-+-
T Consensus 55 ~~vdgiIi~~~--~--~~~~~~~l~~~~~~giPvV~~~ 88 (302)
T TIGR02637 55 QKVDAIAISAN--D--PDALVPALKKAMKRGIKVVTWD 88 (302)
T ss_pred cCCCEEEEeCC--C--hHHHHHHHHHHHHCCCEEEEeC
Confidence 58999999752 2 2334556777888899987553
No 480
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=24.25 E-value=3.8e+02 Score=26.34 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=21.8
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEE
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGI 431 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGI 431 (635)
.++|||++.+ ... ......++.+++.++|+.-+
T Consensus 54 ~~~dgii~~~-~~~---~~~~~~l~~l~~~~ipvv~~ 86 (268)
T cd06323 54 RGVDAIIINP-TDS---DAVVPAVKAANEAGIPVFTI 86 (268)
T ss_pred cCCCEEEEcC-CCh---HHHHHHHHHHHHCCCcEEEE
Confidence 4799999854 221 12245567777789998766
No 481
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=24.12 E-value=92 Score=33.16 Aligned_cols=31 Identities=6% Similarity=-0.084 Sum_probs=28.0
Q ss_pred CCeEEEEcccc-ccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 35 NLQYMFLCLNE-CACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 35 ~~k~i~vtggv-~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
..|-++|||+- =|||| .+.+.|.. +|++|..
T Consensus 7 ~gk~alITGa~~~~GIG~a~A~~la~-----~Ga~Vvv 39 (299)
T PRK06300 7 TGKIAFIAGIGDDQGYGWGIAKALAE-----AGATILV 39 (299)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHH-----CCCEEEE
Confidence 46899999998 59999 99999999 9999976
No 482
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=24.11 E-value=91 Score=32.73 Aligned_cols=30 Identities=10% Similarity=-0.065 Sum_probs=25.4
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
+-|.++||||- +||| .+...|-. +|.+|..
T Consensus 11 ~~k~~lVTGas-~gIG~~ia~~L~~-----~Ga~Vv~ 41 (306)
T PRK07792 11 SGKVAVVTGAA-AGLGRAEALGLAR-----LGATVVV 41 (306)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHH-----CCCEEEE
Confidence 35889999985 8999 99999988 8998865
No 483
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=24.06 E-value=72 Score=35.49 Aligned_cols=28 Identities=11% Similarity=-0.141 Sum_probs=25.0
Q ss_pred CeEEEEccccccchhhHHHHHHhcCcCCCCcee
Q 006689 36 LQYMFLCLNECACINFFSLFLVQNCQYHPNTHF 68 (635)
Q Consensus 36 ~k~i~vtggv~s~lgs~g~ll~~~~~~~~g~~v 68 (635)
|+.|.||||.-||=-.++++|+. .|+.|
T Consensus 1 m~~IgltG~igsGKStv~~~L~~-----~G~~v 28 (395)
T PRK03333 1 MLRIGLTGGIGAGKSTVAARLAE-----LGAVV 28 (395)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-----CCCeE
Confidence 57799999999988899999999 88876
No 484
>CHL00175 minD septum-site determining protein; Validated
Probab=24.04 E-value=1.1e+02 Score=31.83 Aligned_cols=44 Identities=9% Similarity=0.041 Sum_probs=33.8
Q ss_pred cCCCCeEEEEccccccchh------hHHHHHHhcCcCCCCceeEEeccCCc-cccCC
Q 006689 32 APLNLQYMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFGLDPY-LNTDA 81 (635)
Q Consensus 32 ~~~~~k~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K~DpY-lN~d~ 81 (635)
.+.++|.|.|++| -.|+| .||..|.. +|++|-.|-+||- -|++.
T Consensus 11 ~~~~~~vi~v~s~-KGGvGKTt~a~nLA~~La~-----~g~~vlliD~D~~~~~l~~ 61 (281)
T CHL00175 11 SATMSRIIVITSG-KGGVGKTTTTANLGMSIAR-----LGYRVALIDADIGLRNLDL 61 (281)
T ss_pred cCCCceEEEEEcC-CCCCcHHHHHHHHHHHHHh-----CCCeEEEEeCCCCCCChhh
Confidence 3444788888875 35667 78889988 9999999999996 55553
No 485
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=24.01 E-value=83 Score=31.27 Aligned_cols=30 Identities=7% Similarity=-0.061 Sum_probs=24.7
Q ss_pred eEEEEccccccchh-hHHHHHHhcCcCCCCceeEEec
Q 006689 37 QYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLFG 72 (635)
Q Consensus 37 k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~K 72 (635)
|-++|||| -|+|| ++.+.|-+ +|++|.++-
T Consensus 1 k~~lItG~-sg~iG~~la~~l~~-----~G~~v~~~~ 31 (254)
T TIGR02415 1 KVALVTGG-AQGIGKGIAERLAK-----DGFAVAVAD 31 (254)
T ss_pred CEEEEeCC-CchHHHHHHHHHHH-----CCCEEEEEe
Confidence 45889998 59999 88888888 899988753
No 486
>PRK07904 short chain dehydrogenase; Provisional
Probab=23.96 E-value=85 Score=31.87 Aligned_cols=32 Identities=16% Similarity=0.032 Sum_probs=25.2
Q ss_pred CCeEEEEccccccchh-hHHHHHHhcCcCCC-CceeEEec
Q 006689 35 NLQYMFLCLNECACIN-FFSLFLVQNCQYHP-NTHFNLFG 72 (635)
Q Consensus 35 ~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~-g~~v~~~K 72 (635)
+-|-|+|||| -|||| .+.+-|-+ + |++|...=
T Consensus 7 ~~~~vlItGa-s~giG~~la~~l~~-----~gg~~V~~~~ 40 (253)
T PRK07904 7 NPQTILLLGG-TSEIGLAICERYLK-----NAPARVVLAA 40 (253)
T ss_pred CCcEEEEEcC-CcHHHHHHHHHHHh-----cCCCeEEEEe
Confidence 4578999999 69999 88887766 6 48887653
No 487
>PLN02884 6-phosphofructokinase
Probab=23.96 E-value=1e+02 Score=34.81 Aligned_cols=61 Identities=21% Similarity=0.369 Sum_probs=43.1
Q ss_pred hhhHHHHhc--cCCCEEEECCCCCCCcchhHHHHHHHHHHcC--CCEEEE-------------ehhHHHHHHHHhccccc
Q 006689 386 AYKAAWKLL--KGADGILVPGGFGNRGVQGKILAAKYAREHR--IPYLGI-------------CLGMQVAVIEFARSVLN 448 (635)
Q Consensus 386 ~y~~a~~~L--~~~DGIllPGGfG~rg~eg~i~air~are~~--iP~LGI-------------CLGmQllaie~GrnV~g 448 (635)
.+.++.+.| .+.|++++=||.|+ ..+.....+++++.+ +|+.|| |.|+.-++-..+..+..
T Consensus 131 ~~~~i~~~L~~~~Id~LivIGGdgS--~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdTAv~~~~~ai~~ 208 (411)
T PLN02884 131 KTSDIVDSIEARGINMLFVLGGNGT--HAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINS 208 (411)
T ss_pred cHHHHHHHHHHcCCCEEEEECCchH--HHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHHHHHHHHHHHHH
Confidence 456666666 48999999998775 334445555666656 999999 99999997554444433
No 488
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=23.85 E-value=1.4e+02 Score=29.28 Aligned_cols=76 Identities=17% Similarity=0.093 Sum_probs=44.2
Q ss_pred HHHHHHHHccccceeeeEEEEecCCCCCccccCCChhhhh-HHHHhccCCCEEEECCCCCCCcchhHHHHHHHHHHcCCC
Q 006689 349 SILKALLHASVDLRKKLVIDWIPACDLEDATEKENPDAYK-AAWKLLKGADGILVPGGFGNRGVQGKILAAKYAREHRIP 427 (635)
Q Consensus 349 SI~~AL~~ag~~~~vkl~i~wi~s~~le~~~~~~~p~~y~-~a~~~L~~~DGIllPGGfG~rg~eg~i~air~are~~iP 427 (635)
.+.+.|...|+++... .+-+++ ++.-. ...+.++.+|-||++||-|....+-..+++..+. +.|
T Consensus 23 ~l~~~L~~~G~~v~~~----~~v~Dd---------~~~I~~~l~~~~~~~dlVIttGG~G~t~~D~t~ea~~~~~--~~~ 87 (170)
T cd00885 23 FLAKELAELGIEVYRV----TVVGDD---------EDRIAEALRRASERADLVITTGGLGPTHDDLTREAVAKAF--GRP 87 (170)
T ss_pred HHHHHHHHCCCEEEEE----EEeCCC---------HHHHHHHHHHHHhCCCEEEECCCCCCCCCChHHHHHHHHh--CCC
Confidence 4567788888775331 122222 11111 1223456899999999877655556677887776 456
Q ss_pred EEEEehhHHHHH
Q 006689 428 YLGICLGMQVAV 439 (635)
Q Consensus 428 ~LGICLGmQlla 439 (635)
+.+.=--++.|-
T Consensus 88 l~~~~e~~~~i~ 99 (170)
T cd00885 88 LVLDEEALERIE 99 (170)
T ss_pred cccCHHHHHHHH
Confidence 555544445453
No 489
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=23.46 E-value=99 Score=33.06 Aligned_cols=32 Identities=9% Similarity=-0.023 Sum_probs=28.7
Q ss_pred CCCeEEEEcccc-ccchh-hHHHHHHhcCcCCCCceeEE
Q 006689 34 LNLQYMFLCLNE-CACIN-FFSLFLVQNCQYHPNTHFNL 70 (635)
Q Consensus 34 ~~~k~i~vtggv-~s~lg-s~g~ll~~~~~~~~g~~v~~ 70 (635)
++-|-++|||+- -|||| .+++.|-. .|.+|..
T Consensus 7 l~gk~alITGa~~s~GIG~a~A~~la~-----~Ga~Vv~ 40 (303)
T PLN02730 7 LRGKRAFIAGVADDNGYGWAIAKALAA-----AGAEILV 40 (303)
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHH-----CCCEEEE
Confidence 457899999998 69999 99999999 9999975
No 490
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=23.42 E-value=84 Score=32.52 Aligned_cols=37 Identities=16% Similarity=0.222 Sum_probs=31.4
Q ss_pred CeEEEEccccccchh------hHHHHHHhcCcCCCCceeEEeccCCcccc
Q 006689 36 LQYMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFGLDPYLNT 79 (635)
Q Consensus 36 ~k~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K~DpYlN~ 79 (635)
||-|-|+ | =.|+| .|+..|.. +|+||-.+-.||..|-
T Consensus 1 ~~~iav~-g-KGGVGKTT~a~nLA~~La~-----~G~rVllvD~Dpq~~~ 43 (273)
T PRK13232 1 MRQIAIY-G-KGGIGKSTTTQNLTAALST-----MGNKILLVGCDPKADS 43 (273)
T ss_pred CCEEEEE-C-CCCCcHHHHHHHHHHHHHh-----hCCCeEEEeccccccc
Confidence 4667677 5 77888 78999999 9999999999999884
No 491
>PLN02583 cinnamoyl-CoA reductase
Probab=23.37 E-value=96 Score=32.34 Aligned_cols=30 Identities=3% Similarity=-0.009 Sum_probs=24.5
Q ss_pred CeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 36 LQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 36 ~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
.|-|+||||- +.|| .+...|-. +|++|..+
T Consensus 6 ~k~vlVTGat-G~IG~~lv~~Ll~-----~G~~V~~~ 36 (297)
T PLN02583 6 SKSVCVMDAS-GYVGFWLVKRLLS-----RGYTVHAA 36 (297)
T ss_pred CCEEEEECCC-CHHHHHHHHHHHh-----CCCEEEEE
Confidence 4679999994 7788 78888888 89999875
No 492
>PRK01184 hypothetical protein; Provisional
Probab=23.34 E-value=79 Score=30.44 Aligned_cols=29 Identities=7% Similarity=-0.136 Sum_probs=24.8
Q ss_pred CeEEEEccccccchhhHHHHHHhcCcCCCCceeE
Q 006689 36 LQYMFLCLNECACINFFSLFLVQNCQYHPNTHFN 69 (635)
Q Consensus 36 ~k~i~vtggv~s~lgs~g~ll~~~~~~~~g~~v~ 69 (635)
|+.|++||+.-||=+.++++++. .|+.+-
T Consensus 1 ~~~i~l~G~~GsGKsT~a~~~~~-----~g~~~i 29 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSKIARE-----MGIPVV 29 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-----cCCcEE
Confidence 57899999999999988899998 777653
No 493
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.02 E-value=4.6e+02 Score=26.59 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=21.6
Q ss_pred cCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEe
Q 006689 395 KGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGIC 432 (635)
Q Consensus 395 ~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGIC 432 (635)
.++|||++.+.. .. .....++.+++.++|+.-+-
T Consensus 55 ~~vdgiil~~~~--~~--~~~~~~~~~~~~~iPvV~~d 88 (280)
T cd06315 55 LKPDGIVLGGVD--AA--ELQAELELAQKAGIPVVGWH 88 (280)
T ss_pred cCCCEEEEcCCC--HH--HHHHHHHHHHHCCCCEEEec
Confidence 589999998621 11 11244566667789987663
No 494
>PLN02240 UDP-glucose 4-epimerase
Probab=23.00 E-value=96 Score=32.70 Aligned_cols=32 Identities=13% Similarity=0.061 Sum_probs=24.6
Q ss_pred CCCeEEEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 34 LNLQYMFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 34 ~~~k~i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
|+.|-|+||||- ..|| .|.+.|.+ +|++|..+
T Consensus 3 ~~~~~vlItGat-G~iG~~l~~~L~~-----~g~~V~~~ 35 (352)
T PLN02240 3 LMGRTILVTGGA-GYIGSHTVLQLLL-----AGYKVVVI 35 (352)
T ss_pred CCCCEEEEECCC-ChHHHHHHHHHHH-----CCCEEEEE
Confidence 345789999974 6788 78888888 78888764
No 495
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.95 E-value=2.4e+02 Score=29.91 Aligned_cols=32 Identities=34% Similarity=0.468 Sum_probs=23.7
Q ss_pred CCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEehhH
Q 006689 396 GADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICLGM 435 (635)
Q Consensus 396 ~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGICLGm 435 (635)
++|.++.-||=|+ ++.+++. ...|+|||=+|.
T Consensus 52 ~~D~vi~lGGDGT-----~L~a~~~---~~~PilGIN~G~ 83 (271)
T PRK01185 52 NADVIITIGGDGT-----ILRTLQR---AKGPILGINMGG 83 (271)
T ss_pred CCCEEEEEcCcHH-----HHHHHHH---cCCCEEEEECCC
Confidence 7899999998654 4445543 357999999884
No 496
>PF09152 DUF1937: Domain of unknown function (DUF1937); InterPro: IPR015235 This entry is represented by Bacteriophage N15, Gp57. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a set of hypothetical bacterial and phage proteins whose exact function has not, as yet, been described. ; PDB: 1T1J_A.
Probab=22.92 E-value=88 Score=29.34 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=26.3
Q ss_pred ccCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEE
Q 006689 394 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYL 429 (635)
Q Consensus 394 L~~~DGIllPGGfG~rg~eg~i~air~are~~iP~L 429 (635)
|+.+|+++++-=+|-..-.|+-.-++.|.+.++|++
T Consensus 77 L~~c~~lvV~~i~GW~~S~Gi~~Ei~~a~~~~~~V~ 112 (116)
T PF09152_consen 77 LDACDELVVLDIPGWDDSEGIWAEIEAAEEMGMPVF 112 (116)
T ss_dssp HHH-SEEEE---TTGGG-HHHHHHHHHHHHTT-EEE
T ss_pred HHhcceeEEecCCCccccccHHHHHHHHHHcCCeEE
Confidence 568999999997777777899999999999999986
No 497
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=22.85 E-value=6.7e+02 Score=26.11 Aligned_cols=38 Identities=24% Similarity=0.244 Sum_probs=26.2
Q ss_pred ccCCCEEEECCCCCCCcchhHHHHHHHHHHcCCCEEEEeh
Q 006689 394 LKGADGILVPGGFGNRGVQGKILAAKYAREHRIPYLGICL 433 (635)
Q Consensus 394 L~~~DGIllPGGfG~rg~eg~i~air~are~~iP~LGICL 433 (635)
+..-|-+|+---.|. ....+.+++.|++++.|+++|+-
T Consensus 185 ~~~~Dl~I~iS~sG~--t~~~~~~~~~ak~~g~~ii~IT~ 222 (292)
T PRK11337 185 LQEGDVVLVVSHSGR--TSDVIEAVELAKKNGAKIICITN 222 (292)
T ss_pred CCCCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEeC
Confidence 444565544332343 24578999999999999999984
No 498
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=22.79 E-value=2.5e+02 Score=27.84 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=27.3
Q ss_pred HHHhccCCCEEEECCCCC-CCcchhHHHHHHHHHHcCCCEE
Q 006689 390 AWKLLKGADGILVPGGFG-NRGVQGKILAAKYAREHRIPYL 429 (635)
Q Consensus 390 a~~~L~~~DGIllPGGfG-~rg~eg~i~air~are~~iP~L 429 (635)
..+.++++|.|++.-++- ....+.....++.|.+.+++.+
T Consensus 58 l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~ 98 (233)
T PF05368_consen 58 LVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHF 98 (233)
T ss_dssp HHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEE
T ss_pred HHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceE
Confidence 445688999998877643 4445566677777777777766
No 499
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=22.79 E-value=88 Score=33.16 Aligned_cols=37 Identities=16% Similarity=0.198 Sum_probs=30.9
Q ss_pred CeEEEEccccccchh------hHHHHHHhcCcCCCCceeEEeccCCccccC
Q 006689 36 LQYMFLCLNECACIN------FFSLFLVQNCQYHPNTHFNLFGLDPYLNTD 80 (635)
Q Consensus 36 ~k~i~vtggv~s~lg------s~g~ll~~~~~~~~g~~v~~~K~DpYlN~d 80 (635)
|| |.|+| =.|+| .|+..|.. +|+||-.|-+||=.|.=
T Consensus 1 m~-ia~~g--KGGVGKTTta~nLA~~La~-----~G~rVLlID~DpQ~n~t 43 (290)
T CHL00072 1 MK-LAVYG--KGGIGKSTTSCNISIALAR-----RGKKVLQIGCDPKHDST 43 (290)
T ss_pred Ce-EEEEC--CCCCcHHHHHHHHHHHHHH-----CCCeEEEEeccCCCccc
Confidence 45 77777 67788 88999999 99999999999987753
No 500
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=22.58 E-value=72 Score=31.16 Aligned_cols=27 Identities=11% Similarity=0.063 Sum_probs=22.1
Q ss_pred EEEccccccchh-hHHHHHHhcCcCCCCceeEEe
Q 006689 39 MFLCLNECACIN-FFSLFLVQNCQYHPNTHFNLF 71 (635)
Q Consensus 39 i~vtggv~s~lg-s~g~ll~~~~~~~~g~~v~~~ 71 (635)
|+|||| -++|| ++.+.|.. +|++|..+
T Consensus 1 vlItG~-~g~iG~~la~~l~~-----~G~~v~~~ 28 (239)
T TIGR01830 1 ALVTGA-SRGIGRAIALKLAK-----EGAKVIIT 28 (239)
T ss_pred CEEECC-CcHHHHHHHHHHHH-----CCCEEEEE
Confidence 578887 77899 99999988 89887665
Done!