Query 006690
Match_columns 635
No_of_seqs 182 out of 248
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 13:05:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4364 Chromatin assembly fac 100.0 3.7E-74 8E-79 626.4 18.3 604 1-615 188-804 (811)
2 PF12253 CAF1A: Chromatin asse 99.9 9.9E-29 2.2E-33 210.5 5.9 62 297-358 1-64 (77)
3 KOG4363 Putative growth respon 99.1 4.4E-11 9.5E-16 121.3 4.6 232 293-579 9-259 (270)
4 PF11600 CAF-1_p150: Chromatin 98.9 2.8E-08 6.1E-13 100.1 17.0 119 52-175 83-203 (216)
5 KOG4364 Chromatin assembly fac 98.7 5.6E-07 1.2E-11 101.4 17.7 86 78-163 289-385 (811)
6 PF11600 CAF-1_p150: Chromatin 97.7 0.0012 2.7E-08 66.7 15.4 86 63-148 83-168 (216)
7 PF15539 CAF1-p150_C2: CAF1 co 97.5 0.0002 4.2E-09 74.3 6.2 68 512-579 67-166 (292)
8 KOG1029 Endocytic adaptor prot 96.5 0.05 1.1E-06 63.7 15.0 12 529-540 832-843 (1118)
9 PTZ00121 MAEBL; Provisional 96.1 0.18 3.9E-06 62.5 17.3 7 469-475 1980-1986(2084)
10 KOG2891 Surface glycoprotein [ 96.1 0.069 1.5E-06 56.3 12.1 22 124-145 386-407 (445)
11 KOG0163 Myosin class VI heavy 96.1 0.3 6.4E-06 57.5 17.9 17 123-139 990-1006(1259)
12 KOG1029 Endocytic adaptor prot 95.6 0.32 7E-06 57.2 16.0 11 106-116 391-401 (1118)
13 PF15236 CCDC66: Coiled-coil d 95.5 0.59 1.3E-05 45.8 15.2 61 57-117 59-120 (157)
14 KOG2412 Nuclear-export-signal 95.3 0.27 5.8E-06 56.0 13.5 9 437-445 431-439 (591)
15 KOG3054 Uncharacterized conser 95.1 0.17 3.8E-06 52.5 10.4 32 88-119 113-146 (299)
16 PF13904 DUF4207: Domain of un 95.1 2.1 4.5E-05 45.0 18.7 17 149-165 222-238 (264)
17 KOG1144 Translation initiation 94.9 0.34 7.4E-06 57.2 13.1 19 434-452 534-552 (1064)
18 PF05262 Borrelia_P83: Borreli 94.6 0.61 1.3E-05 53.1 14.2 7 37-43 182-188 (489)
19 KOG0163 Myosin class VI heavy 94.3 2 4.3E-05 51.0 17.4 6 324-329 1153-1158(1259)
20 KOG2412 Nuclear-export-signal 93.7 1.1 2.3E-05 51.4 13.7 10 335-344 456-465 (591)
21 PF05262 Borrelia_P83: Borreli 92.2 3.4 7.4E-05 47.2 15.0 6 35-40 198-203 (489)
22 KOG1144 Translation initiation 92.2 1.1 2.3E-05 53.2 11.1 12 149-160 290-301 (1064)
23 KOG3054 Uncharacterized conser 91.7 1.2 2.7E-05 46.5 9.9 10 132-141 162-171 (299)
24 COG3064 TolA Membrane protein 91.3 4 8.6E-05 44.2 13.4 17 57-73 98-114 (387)
25 PF00769 ERM: Ezrin/radixin/mo 90.1 13 0.00029 38.7 15.9 46 36-81 9-54 (246)
26 KOG2072 Translation initiation 89.0 17 0.00037 43.9 17.1 28 5-33 509-536 (988)
27 PF07946 DUF1682: Protein of u 88.9 1.5 3.2E-05 47.2 8.2 6 37-42 243-248 (321)
28 PF07946 DUF1682: Protein of u 87.8 2.4 5.2E-05 45.6 8.8 11 16-26 234-244 (321)
29 PF10446 DUF2457: Protein of u 86.2 0.71 1.5E-05 51.6 3.8 14 380-393 98-111 (458)
30 PF15236 CCDC66: Coiled-coil d 84.0 47 0.001 32.9 15.4 6 61-66 53-58 (157)
31 KOG2002 TPR-containing nuclear 82.1 19 0.00041 44.2 13.3 17 11-27 749-765 (1018)
32 KOG4661 Hsp27-ERE-TATA-binding 81.7 13 0.00029 43.1 11.3 26 120-145 680-705 (940)
33 TIGR03319 YmdA_YtgF conserved 81.0 1.1E+02 0.0024 35.4 18.7 20 207-228 251-270 (514)
34 KOG2072 Translation initiation 80.5 23 0.00049 43.0 13.0 9 152-160 855-863 (988)
35 KOG3654 Uncharacterized CH dom 80.3 9.4 0.0002 43.7 9.5 9 148-156 454-462 (708)
36 PRK00106 hypothetical protein; 80.0 1.3E+02 0.0028 35.2 18.9 20 207-228 272-291 (535)
37 TIGR00570 cdk7 CDK-activating 78.0 95 0.0021 33.9 15.9 40 31-70 99-138 (309)
38 PF09756 DDRGK: DDRGK domain; 77.5 0.74 1.6E-05 46.4 0.0 10 202-211 110-119 (188)
39 KOG4661 Hsp27-ERE-TATA-binding 77.3 20 0.00044 41.7 11.0 12 305-316 806-817 (940)
40 PRK12704 phosphodiesterase; Pr 76.9 1.5E+02 0.0033 34.4 18.4 13 536-548 449-461 (520)
41 PRK12704 phosphodiesterase; Pr 76.3 1.1E+02 0.0023 35.6 16.8 6 208-213 258-263 (520)
42 PF10147 CR6_interact: Growth 76.2 71 0.0015 33.2 13.7 19 120-138 188-206 (217)
43 COG4942 Membrane-bound metallo 75.2 1.5E+02 0.0032 33.7 16.9 22 113-134 234-255 (420)
44 PF09726 Macoilin: Transmembra 75.0 1.4E+02 0.0029 36.1 17.6 13 30-42 440-452 (697)
45 TIGR03319 YmdA_YtgF conserved 73.7 1.4E+02 0.003 34.7 16.8 8 513-520 474-481 (514)
46 PF09726 Macoilin: Transmembra 72.8 1.7E+02 0.0038 35.2 17.8 16 31-46 455-470 (697)
47 KOG1363 Predicted regulator of 71.4 17 0.00037 41.4 8.8 26 73-98 295-320 (460)
48 PRK00409 recombination and DNA 68.0 1.3E+02 0.0028 36.6 15.6 9 62-70 522-530 (782)
49 KOG3654 Uncharacterized CH dom 67.9 31 0.00068 39.7 9.6 15 137-151 449-463 (708)
50 PF04931 DNA_pol_phi: DNA poly 67.3 3.6 7.8E-05 49.3 2.5 10 217-226 510-519 (784)
51 KOG4848 Extracellular matrix-a 67.1 79 0.0017 32.4 11.3 27 115-141 194-220 (225)
52 COG1390 NtpE Archaeal/vacuolar 66.7 1.1E+02 0.0025 30.9 12.6 50 71-120 14-63 (194)
53 PF11208 DUF2992: Protein of u 65.3 26 0.00057 33.6 7.4 12 57-68 66-77 (132)
54 PLN03086 PRLI-interacting fact 64.1 46 0.00099 39.0 10.4 9 132-140 52-60 (567)
55 PLN03086 PRLI-interacting fact 63.4 45 0.00098 39.1 10.2 14 103-116 34-47 (567)
56 PRK06231 F0F1 ATP synthase sub 62.7 1.1E+02 0.0025 31.0 11.9 15 146-160 186-200 (205)
57 PF13904 DUF4207: Domain of un 62.3 2.1E+02 0.0046 30.2 16.7 30 136-165 213-242 (264)
58 KOG4848 Extracellular matrix-a 62.2 2E+02 0.0042 29.7 14.3 12 128-139 200-211 (225)
59 KOG1832 HIV-1 Vpr-binding prot 61.8 6.2 0.00013 47.9 3.0 19 298-316 1361-1379(1516)
60 KOG2357 Uncharacterized conser 61.4 33 0.00072 38.6 8.3 11 20-30 336-346 (440)
61 PF02029 Caldesmon: Caldesmon; 61.1 45 0.00098 38.5 9.5 22 127-148 309-330 (492)
62 KOG4363 Putative growth respon 60.7 9.3 0.0002 40.3 3.7 22 323-344 20-41 (270)
63 PF10147 CR6_interact: Growth 60.6 1.5E+02 0.0032 30.9 12.3 15 125-139 186-200 (217)
64 KOG2507 Ubiquitin regulatory p 60.1 24 0.00052 39.9 6.9 16 298-313 423-438 (506)
65 PF06524 NOA36: NOA36 protein; 59.7 12 0.00025 39.9 4.2 10 296-305 198-207 (314)
66 CHL00019 atpF ATP synthase CF0 58.1 2E+02 0.0043 28.5 15.4 15 146-160 162-176 (184)
67 TIGR01069 mutS2 MutS2 family p 57.7 2.7E+02 0.006 33.9 15.8 14 61-74 516-529 (771)
68 PF04747 DUF612: Protein of un 56.5 91 0.002 35.0 10.4 13 516-528 453-465 (510)
69 TIGR00570 cdk7 CDK-activating 55.7 1E+02 0.0023 33.6 10.7 19 30-48 70-88 (309)
70 KOG2002 TPR-containing nuclear 55.5 5.2E+02 0.011 32.5 19.8 8 18-25 732-739 (1018)
71 KOG0742 AAA+-type ATPase [Post 54.7 4E+02 0.0086 30.9 16.8 13 328-340 405-417 (630)
72 PRK07352 F0F1 ATP synthase sub 54.3 2.1E+02 0.0046 27.9 11.9 15 146-160 157-171 (174)
73 KOG3634 Troponin [Cytoskeleton 54.3 77 0.0017 34.9 9.3 11 148-158 163-173 (361)
74 TIGR03321 alt_F1F0_F0_B altern 54.1 1.8E+02 0.0039 30.2 11.9 13 148-160 145-157 (246)
75 KOG2357 Uncharacterized conser 54.1 70 0.0015 36.2 9.2 10 126-135 419-428 (440)
76 PLN02372 violaxanthin de-epoxi 53.3 1.8E+02 0.004 33.0 12.2 43 13-65 330-381 (455)
77 PF12157 DUF3591: Protein of u 52.4 16 0.00036 41.5 4.3 60 512-571 238-300 (457)
78 PF05285 SDA1: SDA1; InterPro 52.2 8.2 0.00018 41.8 1.8 13 332-344 90-102 (324)
79 PF00769 ERM: Ezrin/radixin/mo 50.6 3.1E+02 0.0067 28.7 13.0 13 150-162 123-135 (246)
80 KOG0579 Ste20-like serine/thre 49.8 2.5E+02 0.0055 34.1 13.1 33 52-84 781-814 (1187)
81 PRK06568 F0F1 ATP synthase sub 49.5 2.7E+02 0.0058 27.4 11.9 78 45-122 45-123 (154)
82 PRK06231 F0F1 ATP synthase sub 49.5 3E+02 0.0065 28.0 16.1 11 147-157 174-184 (205)
83 KOG3130 Uncharacterized conser 48.6 15 0.00032 41.2 3.0 61 321-386 247-309 (514)
84 PRK08475 F0F1 ATP synthase sub 48.5 2.7E+02 0.0059 27.2 12.0 79 45-123 63-141 (167)
85 KOG0008 Transcription initiati 48.2 21 0.00046 45.3 4.5 59 515-573 696-759 (1563)
86 PRK14472 F0F1 ATP synthase sub 47.7 2.8E+02 0.0061 27.1 11.9 12 148-159 158-169 (175)
87 PF11705 RNA_pol_3_Rpc31: DNA- 46.7 18 0.00038 37.2 3.2 9 381-389 211-219 (233)
88 PF05917 DUF874: Helicobacter 46.4 3.1E+02 0.0068 30.0 12.2 9 153-161 225-233 (398)
89 COG1390 NtpE Archaeal/vacuolar 45.1 3.5E+02 0.0076 27.5 13.4 83 77-161 9-91 (194)
90 PF06098 Radial_spoke_3: Radia 45.0 3.3E+02 0.0071 29.6 12.4 17 59-75 136-152 (291)
91 PF04747 DUF612: Protein of un 44.7 2.5E+02 0.0054 31.7 11.5 20 126-145 126-145 (510)
92 PF03879 Cgr1: Cgr1 family; I 43.2 2.8E+02 0.0062 25.9 11.2 20 51-70 35-54 (108)
93 KOG1265 Phospholipase C [Lipid 42.8 5.5E+02 0.012 32.2 14.6 14 33-46 1030-1043(1189)
94 PF06637 PV-1: PV-1 protein (P 41.3 2.7E+02 0.0059 31.4 11.1 24 128-151 356-379 (442)
95 PRK01558 V-type ATP synthase s 41.0 3.6E+02 0.0078 27.2 11.4 16 142-157 73-88 (198)
96 PRK03963 V-type ATP synthase s 39.8 3.8E+02 0.0083 26.4 12.7 9 151-159 81-89 (198)
97 PRK13453 F0F1 ATP synthase sub 39.7 3.8E+02 0.0081 26.3 11.9 14 147-160 157-170 (173)
98 PF06637 PV-1: PV-1 protein (P 39.5 6.2E+02 0.013 28.8 14.6 21 127-147 362-382 (442)
99 PRK14475 F0F1 ATP synthase sub 39.2 3.7E+02 0.0081 26.1 11.9 14 146-159 148-161 (167)
100 PRK08476 F0F1 ATP synthase sub 39.0 3.5E+02 0.0076 25.7 11.8 78 45-122 48-126 (141)
101 KOG3634 Troponin [Cytoskeleton 38.7 2E+02 0.0043 31.9 9.5 11 132-142 153-163 (361)
102 PRK13428 F0F1 ATP synthase sub 38.1 6.5E+02 0.014 28.6 16.2 15 147-161 141-155 (445)
103 PF06886 TPX2: Targeting prote 37.8 1.9E+02 0.0041 24.0 7.2 16 128-143 31-46 (57)
104 PF03066 Nucleoplasmin: Nucleo 37.7 9.4 0.0002 37.1 -0.4 12 335-346 107-118 (149)
105 KOG1832 HIV-1 Vpr-binding prot 37.0 26 0.00056 43.0 2.9 11 300-310 1374-1384(1516)
106 COG2433 Uncharacterized conser 36.4 7.1E+02 0.015 29.9 13.9 29 10-38 353-384 (652)
107 PRK13461 F0F1 ATP synthase sub 36.2 4E+02 0.0086 25.6 15.5 14 146-159 143-156 (159)
108 PRK12705 hypothetical protein; 36.1 7.7E+02 0.017 28.9 15.8 10 512-521 467-476 (508)
109 PRK14473 F0F1 ATP synthase sub 35.9 4.1E+02 0.0088 25.6 11.9 18 143-160 143-160 (164)
110 KOG2038 CAATT-binding transcri 35.4 28 0.00061 42.0 2.8 17 222-238 749-765 (988)
111 PF10669 Phage_Gp23: Protein g 35.3 1.1E+02 0.0024 28.3 5.9 6 148-153 79-84 (121)
112 KOG0996 Structural maintenance 35.2 1.1E+03 0.024 30.5 16.2 19 297-315 697-716 (1293)
113 KOG3756 Pinin (desmosome-assoc 34.8 5.8E+02 0.013 28.2 12.1 34 128-161 203-236 (340)
114 COG5179 TAF1 Transcription ini 33.9 40 0.00086 39.9 3.6 58 515-572 600-659 (968)
115 PRK05759 F0F1 ATP synthase sub 33.1 4.3E+02 0.0092 25.0 15.5 8 150-157 146-153 (156)
116 KOG2507 Ubiquitin regulatory p 32.1 1.2E+02 0.0026 34.6 6.8 7 157-163 284-290 (506)
117 PRK13460 F0F1 ATP synthase sub 31.9 4.9E+02 0.011 25.4 16.2 14 146-159 154-167 (173)
118 PF12037 DUF3523: Domain of un 31.6 7E+02 0.015 27.0 18.4 28 76-103 117-144 (276)
119 PF12037 DUF3523: Domain of un 31.6 7E+02 0.015 27.0 18.2 8 136-143 166-173 (276)
120 KOG0388 SNF2 family DNA-depend 31.5 1E+03 0.023 29.5 14.4 38 128-165 435-476 (1185)
121 PF02029 Caldesmon: Caldesmon; 31.0 2.7E+02 0.0059 32.3 9.6 7 33-39 192-198 (492)
122 PF14943 MRP-S26: Mitochondria 30.2 5.7E+02 0.012 25.6 12.4 8 39-46 49-56 (170)
123 PF04615 Utp14: Utp14 protein; 28.9 3.7E+02 0.008 32.4 10.7 40 21-60 153-192 (735)
124 KOG3859 Septins (P-loop GTPase 28.6 5.4E+02 0.012 28.4 10.6 77 36-112 319-404 (406)
125 PRK12705 hypothetical protein; 27.9 1E+03 0.022 27.8 15.4 19 141-159 170-188 (508)
126 PRK13455 F0F1 ATP synthase sub 27.8 6E+02 0.013 25.0 11.9 78 45-122 68-146 (184)
127 smart00546 CUE Domain that may 27.4 99 0.0022 23.3 3.8 26 532-557 3-28 (43)
128 PF02270 TFIIF_beta: Transcrip 27.3 84 0.0018 33.3 4.5 58 511-573 211-273 (275)
129 PF09831 DUF2058: Uncharacteri 26.7 4E+02 0.0087 26.9 8.9 6 377-382 169-174 (177)
130 KOG4538 Predicted coiled-coil 24.3 3.4E+02 0.0074 25.8 7.2 19 52-70 50-68 (130)
131 PF10380 CRF1: Transcription f 24.2 45 0.00097 31.8 1.6 20 305-329 34-53 (123)
132 PF02845 CUE: CUE domain; Int 24.2 1.1E+02 0.0023 23.1 3.4 25 533-557 3-27 (42)
133 PRK10780 periplasmic chaperone 23.8 6.8E+02 0.015 24.3 10.4 35 59-93 42-76 (165)
134 KOG2253 U1 snRNP complex, subu 23.6 4.4E+02 0.0096 31.7 9.6 29 540-568 623-654 (668)
135 KOG1772 Vacuolar H+-ATPase V1 23.4 5.9E+02 0.013 23.9 8.5 47 71-118 13-59 (108)
136 PF09538 FYDLN_acid: Protein o 23.3 1.4E+02 0.0031 27.7 4.7 11 305-315 23-36 (108)
137 PRK02292 V-type ATP synthase s 23.3 7.1E+02 0.015 24.4 13.4 15 146-160 75-89 (188)
138 PRK13428 F0F1 ATP synthase sub 23.3 1.1E+03 0.025 26.7 15.4 14 530-543 431-444 (445)
139 KOG1824 TATA-binding protein-i 23.2 34 0.00074 42.2 0.8 35 9-43 16-54 (1233)
140 COG4499 Predicted membrane pro 23.1 1.8E+02 0.004 32.8 6.2 18 20-37 330-347 (434)
141 cd07153 Fur_like Ferric uptake 22.9 1.9E+02 0.0041 25.8 5.4 43 519-561 5-49 (116)
142 KOG2505 Ankyrin repeat protein 22.5 1.8E+02 0.004 33.8 6.2 39 92-130 503-541 (591)
143 KOG4403 Cell surface glycoprot 22.0 1.2E+03 0.026 27.1 12.1 12 215-226 416-427 (575)
144 PF05764 YL1: YL1 nuclear prot 21.2 68 0.0015 33.4 2.4 39 338-376 23-69 (240)
145 PF00250 Fork_head: Fork head 20.8 1.2E+02 0.0027 27.2 3.7 56 522-577 12-85 (96)
146 PF06959 RecQ5: RecQ helicase 20.7 97 0.0021 31.8 3.3 43 588-631 137-181 (205)
147 KOG3756 Pinin (desmosome-assoc 20.7 9.1E+02 0.02 26.8 10.6 28 118-145 186-213 (340)
148 PF11081 DUF2890: Protein of u 20.4 39 0.00083 34.3 0.4 14 338-353 19-32 (187)
149 KOG4709 Uncharacterized conser 20.3 3.4E+02 0.0073 28.1 6.9 7 150-156 82-88 (217)
150 KOG1150 Predicted molecular ch 20.3 2.4E+02 0.0052 29.4 5.9 24 47-70 90-116 (250)
No 1
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=100.00 E-value=3.7e-74 Score=626.42 Aligned_cols=604 Identities=41% Similarity=0.621 Sum_probs=485.0
Q ss_pred CccccccCCCChhhhhHHHHHHHHHhhhhchhhHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006690 1 MITALQKSESDPSFINDLMKASKKLGKVLSEASIRVLVDSMLKKNGAEIVEKDAKREEKILIKQLEKNKREVEKEKKRMD 80 (635)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~~~~~k~~~~~~~k~~~~~ek~~~k~~ek~~k~~ekE~~~~~ 80 (635)
|.+|++.++...+|..|+.++..++++.++.++||+..+.|.+||+..+.-+.-.+.++++.||+.|...+.+|+.++++
T Consensus 188 ~p~a~~~sevl~s~~~~~sSs~~~~~~~sdts~~~~~s~q~p~k~~s~~~pk~tk~p~~l~~KQ~rk~meEreK~R~erE 267 (811)
T KOG4364|consen 188 MPAALQRSEVLKSWRSDLSSSAEKLGKISDTSDIRSFSDQMPQKNSSEMAPKDTKRPEKLLLKQLRKNMEEREKERKERE 267 (811)
T ss_pred CcccccHHHHHhhccccchhhHhhhhccCCccccCcccccccccCCCcCCCCCCCcchhHHHHHHHHhHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999988776666555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 006690 81 CEQQKEKLHSERELKRLQEEAERDERRREKEEADIRKQIRKQQEEADKEQRHREKEEAEMKKKLALQKQASMMERFLKRS 160 (635)
Q Consensus 81 ~e~~ke~~~~eke~k~~ee~~~ke~kr~ekee~e~~k~~~k~~~e~~ke~kr~~kee~~~kk~~~~~kqa~~m~~Ffkk~ 160 (635)
+. ..++.+.+...+++++++.++++.++|++++++|..+|+|++-|+|+||++.|+++++|++..+|++.+|++|..+.
T Consensus 268 r~-~leeKrlk~~~~~eek~~~keE~~kekee~Klekd~KKqqkekEkeEKrrKdE~Ek~kKqeek~KR~k~~Erkee~~ 346 (811)
T KOG4364|consen 268 RQ-VLEEKRLKEKEQKEEKKAIKEENNKEKEETKLEKDIKKQQKEKEKEEKRRKDEQEKLKKQEEKQKRAKIMERKEEKS 346 (811)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43 44555556666777888999999999999999999999999999999999999999999999999999999999887
Q ss_pred cCCccCCCCCCCccccccccccCCCCcchhhhhhccccccccCCCCCchhhhhhhcchhhhhhhhhhcccccccccccCc
Q 006690 161 KILTSCQNDESSPRAITSVLLSKNSEQLPEAVTKLVDSTLSSNDEINIDDIRRSHLSSWHRFGHFVRSNRNQHWGIRRKP 240 (635)
Q Consensus 161 k~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~D~~L~~~~~~~~~~i~r~~~~~w~~l~~~~r~~r~~~~g~r~~P 240 (635)
..+.-......+..-.+...-+......+..+-..+|--++..+..+...|+..++..|..+..+.++ ++.+||.++-|
T Consensus 347 rk~deerkK~e~ke~ea~E~rkkr~~aei~Kffqk~~~k~~~~~~a~~s~~~f~pFeikd~M~lapi~-s~~~~~~~rsq 425 (811)
T KOG4364|consen 347 RKSDEERKKLESKEVEAQELRKKRHEAEIGKFFQKIDNKFSTTCEATVSDIRFEPFEIKDQMGLAPIS-SKKHWGMRRSQ 425 (811)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhcccccccCCcccccccccccccchhhcccccccee-hhccchhhhhh
Confidence 75544322222211111112222233345555667787776777888899999999999999765555 58899999999
Q ss_pred hhhhhhhcccc-CCCCCCCCCcchhhhhhhhcccccCcccccccCCCCcccccccc-cceEEEecCCCCCCceeeecCCC
Q 006690 241 KTELFKELKLT-NRGLGHDDDLSMERSEDRCEAQTVDDKSCITSSDSSSAITKCKR-WKQLLQFDKSHRPAFYGIWPKKS 318 (635)
Q Consensus 241 k~e~fk~lkl~-~~~~~~d~el~~e~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~r-~~K~l~F~en~RPpy~GT~~k~s 318 (635)
..+||.-++|. .++.+.+.++.+++-.+++....+++..|....- ...+..+ ++|||||++|+||+|||||+++|
T Consensus 426 ld~Lf~r~pls~~~dvk~q~e~~~e~~~d~~~~adf~~sa~kpve~---e~~k~r~mKaKlLqF~~NrRP~YyGTWrKKS 502 (811)
T KOG4364|consen 426 LDELFPRLPLSTNSDVKSQGEPNMEKQGDGCEEADFDGSACKPVES---ERKKSRRMKAKLLQFDKNRRPGYYGTWRKKS 502 (811)
T ss_pred hhhhcccCCCcccccccccCCccccccCCcceecccccccceeecc---CCcccchhHHHHhhhccccCCcccccccccc
Confidence 99999999997 7787877778777777777666666666655432 1222233 68999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCcccCCCCCCCcccCCCccccCCCCCCCCCCcccchhcc
Q 006690 319 HIVGPRHPLMKDPDLDYDIDSDEEWEEEEPGESLSDCEKDGDEEGCSKADDEDESEDGFFVPDGYLSEDEGVQVDRMEID 398 (635)
Q Consensus 319 ~~v~~r~Pf~kd~~lDYdyDSd~EWeeee~GEdl~~~e~d~e~eed~~~~ded~~~d~f~v~dg~l~d~e~~~~~~~~~d 398 (635)
.+|.+|+||++++.|||+||||+|||||++||+++++|+|++++.+ +|.++++|+|||||||||+|||++.+++++|
T Consensus 503 ~~VsarrPlAq~~llDYEVdSDeEWEEEepGESlS~sEddedd~~e---Ed~edEdDgffVPhgyLSedEgv~d~~~d~D 579 (811)
T KOG4364|consen 503 QVVSARRPLAQDPLLDYEVDSDEEWEEEEPGESLSDSEDDEDDSLE---EDCEDEDDGFFVPHGYLSEDEGVQDDRMDID 579 (811)
T ss_pred cccccCCcccccccccccccCcccccccCCCccccccccccccccc---cccccccCCeecCCccccccccccccccCcc
Confidence 9999999999999999999999999999999999998876442211 3434668999999999999999998888776
Q ss_pred CccccCCCCCcchhhhhhHHHHHHHH-hhhhhhhhHHHHHhhCCCeEecCCCCccccccccccccCCcchhhhhhhhccc
Q 006690 399 LSAEDTKSSPSYKQELESKESCALVR-QRKYLSSLTEQALQKNQPLIILNLMHEKVPLLMAEDLSGTSNMEQKCLQALSI 477 (635)
Q Consensus 399 ~d~e~~~~s~~~~~~~e~ee~~~~~~-kqk~l~~l~~~al~~~qPliI~~l~~~~~p~~~a~d~~~t~k~e~~~Lq~l~~ 477 (635)
+.. ....+-......++..||.+.. +++.+-.++.+++....+++|.+|.|...++..+.+.+++..++..|..+|..
T Consensus 580 ~~e-~dK~tek~k~r~~gp~f~dln~~k~~~~~A~~ah~a~d~ak~~~~~la~ep~~lpa~~dqtp~qpve~~~d~alm~ 658 (811)
T KOG4364|consen 580 PSE-QDKNTEKSKQRQEGPEFCDLNQVKQKHLQALTAHAAKDTAKLIICNLAHEPVSLPAAKDQTPTQPVEQICDRALMV 658 (811)
T ss_pred hhh-hhhhhhhhhhhhcCchHhhhcchhHHHHHHHHHHHhhhhHHHhhhhhccCCCCCchhhccCCCcchHHHHHHHHHH
Confidence 532 1123333455566777888765 67788889999999999999999988877787888888998899999999999
Q ss_pred CCCCCCCcccccccccccccc-----ccccCCC-CCCC-CCCCCCChHHHHHHHhcCCCcHHHHHHHHHHhCCCCcHHHH
Q 006690 478 RPFPGDLHVEITVDIMDDENE-----KDCLSNG-KGST-TLISESDLPAIVSVIQSCSTNMNKILEALQQKFPSISRAQL 550 (635)
Q Consensus 478 ~~~P~~p~~~~pv~~~~~~~~-----~~~~S~~-Kk~k-t~ipd~dLp~Lv~~I~gs~~Sk~~LVEilqk~fP~vSK~~I 550 (635)
+.||......++++....+.+ ..+.||. -.|+ ..+|+.+++.....|..|+.+++.+|+.++..||.++|..+
T Consensus 659 ql~pl~hgn~ns~~~ii~E~qE~~k~~~~~sn~t~~p~~~~~~~~~~~t~s~~~~~~S~~~~~~~~t~~~k~~~~Pk~rl 738 (811)
T KOG4364|consen 659 QLFPLSHGNENSINDIIDEDQEASKFSCSQSNPTSNPKAKIIPDSDLLTVSSTIQSCSQGINRVVETLQQKFPDVPKTRL 738 (811)
T ss_pred HHhhhhcccccchHHHHHHHHHHHHHhhhccCCCCCCCCccccccccccchhhhhccccHHHHHHHhhhhhcCCCCcchh
Confidence 988877655555543322211 1112221 1222 34799999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCceEecHhHHHHcCC--CCCCCCC-CccchhhhhccccCCCCCCCCCCCCCCCC
Q 006690 551 RNKVREISDFNFAENRWQVKREILIELGY--SPDKNGG-RAKGIATFFSKRCLPPDGKSLNPNEASPL 615 (635)
Q Consensus 551 KNTIkEIAtr~~~~krW~VK~EvL~~~gL--~~~~~~~-~~~~~~~~~s~~c~~~~~~~~~~~~~~~~ 615 (635)
--.|+++..| -.-+|+|+...+-.+|+ ||+++++ .|++|.+||+.|||||.....++.++.|.
T Consensus 739 cw~V~~l~~F--q~~~lqv~~qw~y~l~~~~sp~~d~~~~p~t~pt~~~p~~lp~s~~~~~~v~~~~~ 804 (811)
T KOG4364|consen 739 CWKVRELSDF--QDSRLQVKKQWLYKLGLSPSPDKDGKRLPKTIPTFFSPRCLPPSTKPQPAVEDAAE 804 (811)
T ss_pred HHHHHHHHhc--ccccccccceeeeeecCCCCCCCccccCCCCCCcccCcccCCCcCCCCcchhhHHH
Confidence 9999999999 99999999999999999 7888877 49999999999999998666655554443
No 2
>PF12253 CAF1A: Chromatin assembly factor 1 subunit A; InterPro: IPR022043 The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A []. The A domain is uniquely required for the progression of S phase in mouse cells [], independent of its ability to promote histone deposition [] but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints [].
Probab=99.95 E-value=9.9e-29 Score=210.48 Aligned_cols=62 Identities=60% Similarity=1.107 Sum_probs=57.8
Q ss_pred ceEEEecCCCCCCceeeecCC-CcccCCCCCCCCC-CCCCCCCCCccccccccCCCCCCCCCCC
Q 006690 297 KQLLQFDKSHRPAFYGIWPKK-SHIVGPRHPLMKD-PDLDYDIDSDEEWEEEEPGESLSDCEKD 358 (635)
Q Consensus 297 ~K~l~F~en~RPpy~GT~~k~-s~~v~~r~Pf~kd-~~lDYdyDSd~EWeeee~GEdl~~~e~d 358 (635)
||||+||+|+||||||||+++ |.+|++||||+++ +.|||+||||+||+|+++||+|++++++
T Consensus 1 ~K~l~F~e~~RPpY~GT~~k~~s~~v~~r~P~~~d~~~lDYdyDSd~EWeE~e~GEdl~~~eee 64 (77)
T PF12253_consen 1 MKLLQFHENVRPPYYGTWTKKSSKIVTPRNPFAKDLPNLDYDYDSDDEWEEEEEGEDLDSDEEE 64 (77)
T ss_pred CceEEeCCCCCCCEeeEEccCcccccccCCcccccccccceecCCccccccCCCCccccccccc
Confidence 799999999999999999999 8999999999999 7899999999999998999999875543
No 3
>KOG4363 consensus Putative growth response protein [Signal transduction mechanisms]
Probab=99.11 E-value=4.4e-11 Score=121.34 Aligned_cols=232 Identities=19% Similarity=0.206 Sum_probs=130.3
Q ss_pred ccccceEEEecCCCCCCceeeecCCCcccCCCCCCCC-CCCCCCCCCCcccccccc-CCCCCCCCCCCCCc--ccCCCCC
Q 006690 293 CKRWKQLLQFDKSHRPAFYGIWPKKSHIVGPRHPLMK-DPDLDYDIDSDEEWEEEE-PGESLSDCEKDGDE--EGCSKAD 368 (635)
Q Consensus 293 ~~r~~K~l~F~en~RPpy~GT~~k~s~~v~~r~Pf~k-d~~lDYdyDSd~EWeeee-~GEdl~~~e~d~e~--eed~~~~ 368 (635)
+.-+++|+.|++ |||+.||++-. ..+++..||.. .+.+.|+|++|+||..++ .|+ +++.++.+++ ++. .
T Consensus 9 ~~~ph~y~~nr~--~pp~lst~sld-~t~~~~~~~sa~g~~de~d~g~d~e~~~ee~~~~-vdn~dd~~e~~~~~~---~ 81 (270)
T KOG4363|consen 9 AQVPHKYIKNRE--RPPFLSTYSLD-FTLPPNDPFSAKGTGDEEDYGEDEEWPNEEEEGE-VDNGDDIEEDRGEEE---F 81 (270)
T ss_pred ccCCccccccee--cCCccccccCC-CcCCCCCcccccCCchhhhcCCccccCChhhccc-cccCcccccccccce---e
Confidence 334899999999 99999999966 67888888875 589999999999997554 343 4333333221 111 1
Q ss_pred CCcccCCCccccCCCCCCCCCCcccchhccCccccCCCCCcchhhhhhHHHHHHHHhhhhhhhhHHHHHhhCCCeEecCC
Q 006690 369 DEDESEDGFFVPDGYLSEDEGVQVDRMEIDLSAEDTKSSPSYKQELESKESCALVRQRKYLSSLTEQALQKNQPLIILNL 448 (635)
Q Consensus 369 ded~~~d~f~v~dg~l~d~e~~~~~~~~~d~d~e~~~~s~~~~~~~e~ee~~~~~~kqk~l~~l~~~al~~~qPliI~~l 448 (635)
-+|++..-|.|.||++...++.... |... . .+....|++...
T Consensus 82 ~dded~~~f~~~~~v~~~l~~~ll~---i~~~---------~-------------------------v~~~k~pllp~f- 123 (270)
T KOG4363|consen 82 LDDEDVVLFSVGDGVLLALVLNLLQ---IQEN---------V-------------------------VLDPKGPLLPIF- 123 (270)
T ss_pred ecccccchhhccchhhhhhcchHHh---hhcc---------c-------------------------eecCCcceeehh-
Confidence 1124567788889888754432110 0000 0 000111221110
Q ss_pred CCccccccccccccCCcchhhhhhhhcccC-C---CCCCCccc----cccc----cccccccccccCCCCCCC-CCCCCC
Q 006690 449 MHEKVPLLMAEDLSGTSNMEQKCLQALSIR-P---FPGDLHVE----ITVD----IMDDENEKDCLSNGKGST-TLISES 515 (635)
Q Consensus 449 ~~~~~p~~~a~d~~~t~k~e~~~Lq~l~~~-~---~P~~p~~~----~pv~----~~~~~~~~~~~S~~Kk~k-t~ipd~ 515 (635)
+.+-|......+. ..+.++... + .| +|... .++. .++..+...+.+.-+.-+ ..++..
T Consensus 124 -------~~~w~feP~~g~~-s~v~gl~Y~~iD~~lg-~P~~ke~~wl~~sR~~A~f~~~~~s~~ks~f~~n~q~i~~l~ 194 (270)
T KOG4363|consen 124 -------SSAWWFEPCCGTA-SAVKGLLYPCIDGHLG-EPHKKEREWLWVSRCNAVFVGINHSSAKSDFKNNKQLILTLA 194 (270)
T ss_pred -------hhhhhCCcchhHH-HHHhhheeeeecccCC-CCCccchhhhhhhhHHHHHHhhhhccccCccccCceeeecHH
Confidence 0000000000000 000000000 0 01 12100 0110 111111111122222222 235779
Q ss_pred ChHHHHHHHhcCCCcHHHHHHHHHHhCCCCcHHHHHHHHHHhhhccC--CCCceEecHhHHHHcCC
Q 006690 516 DLPAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNF--AENRWQVKREILIELGY 579 (635)
Q Consensus 516 dLp~Lv~~I~gs~~Sk~~LVEilqk~fP~vSK~~IKNTIkEIAtr~~--~~krW~VK~EvL~~~gL 579 (635)
+|+.++.-|.++++|..+|.+++++.+|.|+|..|.|||.+||.+.. ..+.|.+|- +.++.++
T Consensus 195 als~~iw~vfDrsrsg~~L~ei~~~l~p~vtknlV~ntv~eya~r~fk~~~R~Wipki-~Fa~~~~ 259 (270)
T KOG4363|consen 195 ALSRGIWYVFDRSRSGGGLGEIIAFLAPQVTKNLVYNTVYEYASRDFKLYPRSWIPKI-FFAGGNT 259 (270)
T ss_pred HHhhhhhheeccccccchhHHHHHHHHHHHHHHHHhhcceeeeccchhhcccchhhhh-hhccccc
Confidence 99999999999999999999999999999999999999999999964 678999987 4444433
No 4
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=98.95 E-value=2.8e-08 Score=100.06 Aligned_cols=119 Identities=36% Similarity=0.489 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006690 52 KDAKREEKILIKQLEKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRREKEEADIRKQIRKQQEEADKEQR 131 (635)
Q Consensus 52 k~~~~~ek~~~k~~ek~~k~~ekE~~~~~~e~~ke~~~~eke~k~~ee~~~ke~kr~ekee~e~~k~~~k~~~e~~ke~k 131 (635)
+..++.++...++.+++.++.++|.++++++.+++..+.+++.+++..+.++.++.++|++.+.+++. +...++++
T Consensus 83 k~~ek~eke~~k~e~k~~k~~eKE~~~~~keeek~~ke~ek~~~k~~~E~ek~ek~~~kee~~kek~e----~~~~k~ee 158 (216)
T PF11600_consen 83 KEEEKEEKEREKEEEKEEKEREKEEERREKEEEKEKKEEEKEEKKEKKEEEKAEKEREKEEKRKEKEE----EKEAKEEE 158 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH----HHHhHHHH
Confidence 44455555555666666666666666665555555554444444444444444444444433333321 11233333
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHhhccccCCccCCCCCCCccc
Q 006690 132 HREKEEAEMKKKLA--LQKQASMMERFLKRSKILTSCQNDESSPRA 175 (635)
Q Consensus 132 r~~kee~~~kk~~~--~~kqa~~m~~Ffkk~k~~~~~~~~~ss~~~ 175 (635)
++.|++++.+++.+ +.+.++.|++||+++.++.. ++..++|..
T Consensus 159 k~~keeekr~~eE~~~~k~~q~~~~~FF~k~~~~~~-~~~~~~~~~ 203 (216)
T PF11600_consen 159 KRKKEEEKRKKEEEKRLKKEQARITSFFKKPKTPKA-PKEKSDYEK 203 (216)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCCC-CCccchhhc
Confidence 33344444333333 22337789999999884444 344454443
No 5
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=98.69 E-value=5.6e-07 Score=101.43 Aligned_cols=86 Identities=24% Similarity=0.461 Sum_probs=55.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-------HHHHHHHHHH-HHHHHHH
Q 006690 78 RMDCEQQKEKLHSERELKRLQEEAERDERRREKEEADIRKQIRKQQEE---ADKE-------QRHREKEEAE-MKKKLAL 146 (635)
Q Consensus 78 ~~~~e~~ke~~~~eke~k~~ee~~~ke~kr~ekee~e~~k~~~k~~~e---~~ke-------~kr~~kee~~-~kk~~~~ 146 (635)
+.++...+++.+.+++.|++|.+.+++|||+.+|++.++|+..++... .+++ ++|+++++.+ ...+..+
T Consensus 289 keE~~kekee~Klekd~KKqqkekEkeEKrrKdE~Ek~kKqeek~KR~k~~Erkee~~rk~deerkK~e~ke~ea~E~rk 368 (811)
T KOG4364|consen 289 KEENNKEKEETKLEKDIKKQQKEKEKEEKRRKDEQEKLKKQEEKQKRAKIMERKEEKSRKSDEERKKLESKEVEAQELRK 368 (811)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHH
Confidence 334445677777788899999999999999999988888876554332 2222 2222222211 1222334
Q ss_pred HHHHHHHHHhhccccCC
Q 006690 147 QKQASMMERFLKRSKIL 163 (635)
Q Consensus 147 ~kqa~~m~~Ffkk~k~~ 163 (635)
.++.+.|.+||.+..+.
T Consensus 369 kr~~aei~Kffqk~~~k 385 (811)
T KOG4364|consen 369 KRHEAEIGKFFQKIDNK 385 (811)
T ss_pred HHHHHHHHhhhcccccc
Confidence 56678899999998753
No 6
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=97.68 E-value=0.0012 Score=66.69 Aligned_cols=86 Identities=33% Similarity=0.491 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006690 63 KQLEKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRREKEEADIRKQIRKQQEEADKEQRHREKEEAEMKK 142 (635)
Q Consensus 63 k~~ek~~k~~ekE~~~~~~e~~ke~~~~eke~k~~ee~~~ke~kr~ekee~e~~k~~~k~~~e~~ke~kr~~kee~~~kk 142 (635)
++.++..++.+++.++..+++++++.+.+++..+...+.++.+++..+|+..++++..+.+++.++++....+++++.++
T Consensus 83 k~~ek~eke~~k~e~k~~k~~eKE~~~~~keeek~~ke~ek~~~k~~~E~ek~ek~~~kee~~kek~e~~~~k~eek~~k 162 (216)
T PF11600_consen 83 KEEEKEEKEREKEEEKEEKEREKEEERREKEEEKEKKEEEKEEKKEKKEEEKAEKEREKEEKRKEKEEEKEAKEEEKRKK 162 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45555555555555555556666666665555555555555555555555556666666666666665555666666666
Q ss_pred HHHHHH
Q 006690 143 KLALQK 148 (635)
Q Consensus 143 ~~~~~k 148 (635)
+....+
T Consensus 163 eeekr~ 168 (216)
T PF11600_consen 163 EEEKRK 168 (216)
T ss_pred HHHHHh
Confidence 555443
No 7
>PF15539 CAF1-p150_C2: CAF1 complex subunit p150, region binding to CAF1-p60 at C-term
Probab=97.46 E-value=0.0002 Score=74.32 Aligned_cols=68 Identities=21% Similarity=0.299 Sum_probs=56.8
Q ss_pred CCCCChHHHHHHHhcCCCcHHHHHHHHHHhC----------------------CC-------CcHHHHHHHHHHhhhccC
Q 006690 512 ISESDLPAIVSVIQSCSTNMNKILEALQQKF----------------------PS-------ISRAQLRNKVREISDFNF 562 (635)
Q Consensus 512 ipd~dLp~Lv~~I~gs~~Sk~~LVEilqk~f----------------------P~-------vSK~~IKNTIkEIAtr~~ 562 (635)
..+..|..|+.++|||..+...||-.|+... |. .+|..|+..|.+.|.|.+
T Consensus 67 ~DeqlL~QLlpLlHGNvN~sk~iI~EFqE~crrg~~s~~~~sp~sPs~s~l~tP~~~~~~~vpsk~~lkr~isensvyeK 146 (292)
T PF15539_consen 67 RDEQLLQQLLPLLHGNVNGSKFIIREFQEYCRRGLLSEETSSPDSPSKSRLRTPEFSEDSAVPSKARLKRIISENSVYEK 146 (292)
T ss_pred ccHHHHHHHHHHhcCCcccchHHHHHHHHHHHhccccCCCCCCCCCCccccCCCcccccccccccchHHhhhhhhhhhcc
Confidence 4556699999999999999999998887432 11 378899999999999964
Q ss_pred ---CCCceEecHhHHHHcCC
Q 006690 563 ---AENRWQVKREILIELGY 579 (635)
Q Consensus 563 ---~~krW~VK~EvL~~~gL 579 (635)
..-||+|.++||.+|++
T Consensus 147 rP~~RmCWyVh~evL~kF~q 166 (292)
T PF15539_consen 147 RPKFRMCWYVHPEVLKKFQQ 166 (292)
T ss_pred CCCCcEEEEECHHHHhhcCc
Confidence 44599999999999999
No 8
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.05 Score=63.66 Aligned_cols=12 Identities=8% Similarity=0.213 Sum_probs=6.6
Q ss_pred CcHHHHHHHHHH
Q 006690 529 TNMNKILEALQQ 540 (635)
Q Consensus 529 ~Sk~~LVEilqk 540 (635)
|+++.+|.+|.+
T Consensus 832 Fskgd~I~Vlek 843 (1118)
T KOG1029|consen 832 FSKGDTITVLEK 843 (1118)
T ss_pred ccCCCeeeeehh
Confidence 455556655544
No 9
>PTZ00121 MAEBL; Provisional
Probab=96.13 E-value=0.18 Score=62.51 Aligned_cols=7 Identities=29% Similarity=0.686 Sum_probs=3.3
Q ss_pred hhhhhhc
Q 006690 469 QKCLQAL 475 (635)
Q Consensus 469 ~~~Lq~l 475 (635)
.+||.-|
T Consensus 1980 dYCLkYF 1986 (2084)
T PTZ00121 1980 DFCLKYF 1986 (2084)
T ss_pred HHHHHHc
Confidence 3555444
No 10
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=96.10 E-value=0.069 Score=56.35 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006690 124 EEADKEQRHREKEEAEMKKKLA 145 (635)
Q Consensus 124 ~e~~ke~kr~~kee~~~kk~~~ 145 (635)
+-..+|.+|+.|++++++.+..
T Consensus 386 kieareerrkqkeeeklk~e~q 407 (445)
T KOG2891|consen 386 KIEAREERRKQKEEEKLKAEEQ 407 (445)
T ss_pred HHHHHHHHHhhhHHHHHHHHHH
Confidence 3445677777777777776655
No 11
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.08 E-value=0.3 Score=57.47 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006690 123 QEEADKEQRHREKEEAE 139 (635)
Q Consensus 123 ~~e~~ke~kr~~kee~~ 139 (635)
.+|+++|-+|+.++|.+
T Consensus 990 a~e~eee~k~q~~~Eqe 1006 (1259)
T KOG0163|consen 990 AKEAEEEAKRQNQLEQE 1006 (1259)
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 34444555555544433
No 12
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=0.32 Score=57.25 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 006690 106 RRREKEEADIR 116 (635)
Q Consensus 106 kr~ekee~e~~ 116 (635)
+|++.|+.|+.
T Consensus 391 rkkeie~rEaa 401 (1118)
T KOG1029|consen 391 RKKEIERREAA 401 (1118)
T ss_pred HHHHHHHHHHH
Confidence 33344433333
No 13
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=95.54 E-value=0.59 Score=45.83 Aligned_cols=61 Identities=31% Similarity=0.528 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 006690 57 EEKILIKQLEKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRR-EKEEADIRK 117 (635)
Q Consensus 57 ~ek~~~k~~ek~~k~~ekE~~~~~~e~~ke~~~~eke~k~~ee~~~ke~kr~-ekee~e~~k 117 (635)
+...+..|++....+.+.|.++..+|.+.|+.+..++....+.+++.|..+. +||++..+|
T Consensus 59 ~q~ai~~QieEk~r~k~~E~err~~EE~~EE~Rl~rere~~q~~~E~E~~~~~~KEe~~~~k 120 (157)
T PF15236_consen 59 HQRAIKQQIEEKRRQKQEEEERRRREEEEEEERLAREREELQRQFEEEQRKQREKEEEQTRK 120 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555788888877777788888888888888898888888888887776654 666554444
No 14
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=95.28 E-value=0.27 Score=55.99 Aligned_cols=9 Identities=33% Similarity=0.763 Sum_probs=4.2
Q ss_pred HhhCCCeEe
Q 006690 437 LQKNQPLII 445 (635)
Q Consensus 437 l~~~qPliI 445 (635)
|.++.|++|
T Consensus 431 l~KkCP~~V 439 (591)
T KOG2412|consen 431 LHKKCPYVV 439 (591)
T ss_pred HHhcCCccc
Confidence 344445544
No 15
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=0.17 Score=52.53 Aligned_cols=32 Identities=47% Similarity=0.622 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 006690 88 LHSERELKRLQEEAERDERRRE--KEEADIRKQI 119 (635)
Q Consensus 88 ~~~eke~k~~ee~~~ke~kr~e--kee~e~~k~~ 119 (635)
.+.+|+++|+.|++.||++++. ++|++.+|+.
T Consensus 113 akqerr~qRe~E~~eREeRk~ke~~eE~erKkdE 146 (299)
T KOG3054|consen 113 AKQERRAQREAEEAEREERKRKEDYEEAERKKDE 146 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhH
Confidence 3445555666666666665542 2444444433
No 16
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=95.05 E-value=2.1 Score=45.00 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=11.3
Q ss_pred HHHHHHHhhccccCCcc
Q 006690 149 QASMMERFLKRSKILTS 165 (635)
Q Consensus 149 qa~~m~~Ffkk~k~~~~ 165 (635)
....+..|+...+.-..
T Consensus 222 ae~A~~~Wl~~~~~kpk 238 (264)
T PF13904_consen 222 AEEAFQKWLKNVKNKPK 238 (264)
T ss_pred HHHHHHHHHHHcccCCC
Confidence 34568899987765433
No 17
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=94.85 E-value=0.34 Score=57.18 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=12.2
Q ss_pred HHHHhhCCCeEecCCCCcc
Q 006690 434 EQALQKNQPLIILNLMHEK 452 (635)
Q Consensus 434 ~~al~~~qPliI~~l~~~~ 452 (635)
..-++..+.+||+.-.|.+
T Consensus 534 K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 534 KKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred hhhcCCCeeEEecCCCchh
Confidence 3345667778887666654
No 18
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=94.62 E-value=0.61 Score=53.05 Aligned_cols=7 Identities=14% Similarity=0.387 Sum_probs=2.7
Q ss_pred HHHHhhh
Q 006690 37 LVDSMLK 43 (635)
Q Consensus 37 ~~~~~~~ 43 (635)
.|+.|..
T Consensus 182 vv~~l~~ 188 (489)
T PF05262_consen 182 VVQELRE 188 (489)
T ss_pred HHHHHhh
Confidence 3344333
No 19
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=94.30 E-value=2 Score=51.02 Aligned_cols=6 Identities=50% Similarity=1.060 Sum_probs=2.4
Q ss_pred CCCCCC
Q 006690 324 RHPLMK 329 (635)
Q Consensus 324 r~Pf~k 329 (635)
|.||.+
T Consensus 1153 ri~F~~ 1158 (1259)
T KOG0163|consen 1153 RIPFMR 1158 (1259)
T ss_pred ecceec
Confidence 334443
No 20
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=93.74 E-value=1.1 Score=51.36 Aligned_cols=10 Identities=30% Similarity=0.774 Sum_probs=3.8
Q ss_pred CCCCCccccc
Q 006690 335 YDIDSDEEWE 344 (635)
Q Consensus 335 YdyDSd~EWe 344 (635)
|-.-++-.||
T Consensus 456 yk~~d~nk~E 465 (591)
T KOG2412|consen 456 YKAWDSNKWE 465 (591)
T ss_pred cccccccccc
Confidence 3333333443
No 21
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=92.21 E-value=3.4 Score=47.21 Aligned_cols=6 Identities=33% Similarity=0.495 Sum_probs=3.0
Q ss_pred HHHHHH
Q 006690 35 RVLVDS 40 (635)
Q Consensus 35 r~~~~~ 40 (635)
+.|||-
T Consensus 198 k~m~D~ 203 (489)
T PF05262_consen 198 KDMVDI 203 (489)
T ss_pred hhhHHH
Confidence 445554
No 22
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=92.16 E-value=1.1 Score=53.24 Aligned_cols=12 Identities=42% Similarity=0.664 Sum_probs=6.1
Q ss_pred HHHHHHHhhccc
Q 006690 149 QASMMERFLKRS 160 (635)
Q Consensus 149 qa~~m~~Ffkk~ 160 (635)
++.+.++|++.-
T Consensus 290 ~~a~aea~l~~l 301 (1064)
T KOG1144|consen 290 EAALAEAFLKQL 301 (1064)
T ss_pred HHHHHHHHHHHH
Confidence 344555665544
No 23
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.73 E-value=1.2 Score=46.45 Aligned_cols=10 Identities=40% Similarity=0.508 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 006690 132 HREKEEAEMK 141 (635)
Q Consensus 132 r~~kee~~~k 141 (635)
|++|||...|
T Consensus 162 RkakEE~ark 171 (299)
T KOG3054|consen 162 RKAKEEEARK 171 (299)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 24
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=91.35 E-value=4 Score=44.21 Aligned_cols=17 Identities=35% Similarity=0.474 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006690 57 EEKILIKQLEKNKREVE 73 (635)
Q Consensus 57 ~ek~~~k~~ek~~k~~e 73 (635)
.|.++++|||+++.+..
T Consensus 98 aEqErlkQle~er~~a~ 114 (387)
T COG3064 98 AEQERLKQLEKERLKAQ 114 (387)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 56678888888766433
No 25
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=90.12 E-value=13 Score=38.72 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=25.8
Q ss_pred HHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006690 36 VLVDSMLKKNGAEIVEKDAKREEKILIKQLEKNKREVEKEKKRMDC 81 (635)
Q Consensus 36 ~~~~~~~~k~~~~~~~k~~~~~ek~~~k~~ek~~k~~ekE~~~~~~ 81 (635)
-|.++|.|-...-+.+..+=.+.......|+..++.++.+.+++++
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~ 54 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQ 54 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555445555556666666666666555444
No 26
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=88.96 E-value=17 Score=43.93 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=17.7
Q ss_pred cccCCCChhhhhHHHHHHHHHhhhhchhh
Q 006690 5 LQKSESDPSFINDLMKASKKLGKVLSEAS 33 (635)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (635)
|+.-++++ -++-|--.+.-|++++..-+
T Consensus 509 lqs~~sE~-ir~~L~~m~~~L~~~~e~~d 536 (988)
T KOG2072|consen 509 LQSMPSEG-IRSQLTAMAESLSKVVEELD 536 (988)
T ss_pred hhcCchHh-HHHHHHHHHHHHHHHHHhhC
Confidence 44455555 56667777777777765544
No 27
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=88.88 E-value=1.5 Score=47.19 Aligned_cols=6 Identities=33% Similarity=0.750 Sum_probs=2.7
Q ss_pred HHHHhh
Q 006690 37 LVDSML 42 (635)
Q Consensus 37 ~~~~~~ 42 (635)
|||.+.
T Consensus 243 l~D~~~ 248 (321)
T PF07946_consen 243 LIDKLA 248 (321)
T ss_pred HHHHhh
Confidence 444443
No 28
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=87.77 E-value=2.4 Score=45.63 Aligned_cols=11 Identities=27% Similarity=0.066 Sum_probs=4.3
Q ss_pred hHHHHHHHHHh
Q 006690 16 NDLMKASKKLG 26 (635)
Q Consensus 16 ~~~~~~~~~~~ 26 (635)
..|+.+.-.|.
T Consensus 234 ~~l~~~v~~l~ 244 (321)
T PF07946_consen 234 EPLLKLVFYLI 244 (321)
T ss_pred HHHHHHHHHHH
Confidence 33444433333
No 29
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=86.19 E-value=0.71 Score=51.64 Aligned_cols=14 Identities=29% Similarity=0.378 Sum_probs=10.4
Q ss_pred cCCCCCCCCCCccc
Q 006690 380 PDGYLSEDEGVQVD 393 (635)
Q Consensus 380 ~dg~l~d~e~~~~~ 393 (635)
.|||-+|+|..+.+
T Consensus 98 ddG~~TDnE~GFAd 111 (458)
T PF10446_consen 98 DDGNETDNEAGFAD 111 (458)
T ss_pred ccCccCcccccccc
Confidence 68999988865543
No 30
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=83.96 E-value=47 Score=32.87 Aligned_cols=6 Identities=67% Similarity=0.523 Sum_probs=2.3
Q ss_pred HHHHHH
Q 006690 61 LIKQLE 66 (635)
Q Consensus 61 ~~k~~e 66 (635)
.+|++|
T Consensus 53 R~kq~E 58 (157)
T PF15236_consen 53 RQKQLE 58 (157)
T ss_pred HHHHHH
Confidence 334443
No 31
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=82.07 E-value=19 Score=44.25 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=8.2
Q ss_pred ChhhhhHHHHHHHHHhh
Q 006690 11 DPSFINDLMKASKKLGK 27 (635)
Q Consensus 11 ~~~~~~~~~~~~~~~~~ 27 (635)
++...+|+--+..+|+.
T Consensus 749 ~~~v~FN~a~v~kkla~ 765 (1018)
T KOG2002|consen 749 NTSVKFNLALVLKKLAE 765 (1018)
T ss_pred cchHHhHHHHHHHHHHH
Confidence 33445555555555543
No 32
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=81.72 E-value=13 Score=43.14 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006690 120 RKQQEEADKEQRHREKEEAEMKKKLA 145 (635)
Q Consensus 120 ~k~~~e~~ke~kr~~kee~~~kk~~~ 145 (635)
-+.++++.++|+|--.+-+++..+..
T Consensus 680 M~ve~eRr~eqeRihreReelRrqqe 705 (940)
T KOG4661|consen 680 MKVEEERRDEQERIHREREELRRQQE 705 (940)
T ss_pred HHHHHhhcchhhhhhhhHHHHhhccc
Confidence 45555555666665555556555544
No 33
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=80.96 E-value=1.1e+02 Score=35.43 Aligned_cols=20 Identities=15% Similarity=0.458 Sum_probs=10.0
Q ss_pred Cchhhhhhhcchhhhhhhhhhc
Q 006690 207 NIDDIRRSHLSSWHRFGHFVRS 228 (635)
Q Consensus 207 ~~~~i~r~~~~~w~~l~~~~r~ 228 (635)
.++++||. + .-..|-.++..
T Consensus 251 ~fdp~rre-i-a~~~l~~li~d 270 (514)
T TIGR03319 251 GFDPVRRE-I-ARMALEKLIQD 270 (514)
T ss_pred CCchHHHH-H-HHHHHHHHHHc
Confidence 45777763 3 22344444554
No 34
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=80.47 E-value=23 Score=42.96 Aligned_cols=9 Identities=22% Similarity=0.032 Sum_probs=4.0
Q ss_pred HHHHhhccc
Q 006690 152 MMERFLKRS 160 (635)
Q Consensus 152 ~m~~Ffkk~ 160 (635)
..++|-...
T Consensus 855 ~~ereRr~~ 863 (988)
T KOG2072|consen 855 TEERERRIN 863 (988)
T ss_pred cchhhhcch
Confidence 445544333
No 35
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=80.30 E-value=9.4 Score=43.68 Aligned_cols=9 Identities=44% Similarity=0.637 Sum_probs=4.8
Q ss_pred HHHHHHHHh
Q 006690 148 KQASMMERF 156 (635)
Q Consensus 148 kqa~~m~~F 156 (635)
||..+|+-.
T Consensus 454 kqlklmed~ 462 (708)
T KOG3654|consen 454 KQLKLMEDL 462 (708)
T ss_pred HHHHHHHhh
Confidence 455566553
No 36
>PRK00106 hypothetical protein; Provisional
Probab=80.04 E-value=1.3e+02 Score=35.23 Aligned_cols=20 Identities=20% Similarity=0.486 Sum_probs=9.6
Q ss_pred Cchhhhhhhcchhhhhhhhhhc
Q 006690 207 NIDDIRRSHLSSWHRFGHFVRS 228 (635)
Q Consensus 207 ~~~~i~r~~~~~w~~l~~~~r~ 228 (635)
+++|+||. + .-..|-.++..
T Consensus 272 ~fdpvRRe-i-Ar~~le~Li~d 291 (535)
T PRK00106 272 GFDPIRRE-I-ARMTLESLIKD 291 (535)
T ss_pred CCChHHHH-H-HHHHHHHHHHc
Confidence 45777763 2 22334444444
No 37
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.01 E-value=95 Score=33.89 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=20.5
Q ss_pred hhhHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 006690 31 EASIRVLVDSMLKKNGAEIVEKDAKREEKILIKQLEKNKR 70 (635)
Q Consensus 31 ~~~ir~~~~~~~~k~~~~~~~k~~~~~ek~~~k~~ek~~k 70 (635)
++.|-.||=.|....+.+.......+-++.=..+++.+..
T Consensus 99 LE~vEdii~nL~~~~d~~~te~~l~~y~~~n~~~I~~n~~ 138 (309)
T TIGR00570 99 LEEVEDIVYNLTNNIDLENTKKKIETYQKENKDVIQKNKE 138 (309)
T ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4567777777775544444444444444444444444433
No 38
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=77.48 E-value=0.74 Score=46.36 Aligned_cols=10 Identities=20% Similarity=0.664 Sum_probs=3.8
Q ss_pred cCCCCCchhh
Q 006690 202 SNDEINIDDI 211 (635)
Q Consensus 202 ~~~~~~~~~i 211 (635)
.+.-+.+++|
T Consensus 110 ~~Kvv~ledl 119 (188)
T PF09756_consen 110 EHKVVNLEDL 119 (188)
T ss_dssp H-SEE-HHHH
T ss_pred HcceeeHHHH
Confidence 3334555554
No 39
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=77.29 E-value=20 Score=41.72 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=6.0
Q ss_pred CCCCCceeeecC
Q 006690 305 SHRPAFYGIWPK 316 (635)
Q Consensus 305 n~RPpy~GT~~k 316 (635)
|.|-.+-|.++.
T Consensus 806 dsrdGwgGygsd 817 (940)
T KOG4661|consen 806 DSRDGWGGYGSD 817 (940)
T ss_pred ccCCCccccccc
Confidence 455555554443
No 40
>PRK12704 phosphodiesterase; Provisional
Probab=76.87 E-value=1.5e+02 Score=34.36 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=6.5
Q ss_pred HHHHHhCCCCcHH
Q 006690 536 EALQQKFPSISRA 548 (635)
Q Consensus 536 Eilqk~fP~vSK~ 548 (635)
|.+...||+|.|+
T Consensus 449 e~i~~~~~gv~~~ 461 (520)
T PRK12704 449 EEIANSFEGVEKA 461 (520)
T ss_pred HHHHHhCCcHHHH
Confidence 4444555555544
No 41
>PRK12704 phosphodiesterase; Provisional
Probab=76.30 E-value=1.1e+02 Score=35.58 Aligned_cols=6 Identities=67% Similarity=1.021 Sum_probs=2.7
Q ss_pred chhhhh
Q 006690 208 IDDIRR 213 (635)
Q Consensus 208 ~~~i~r 213 (635)
+++++|
T Consensus 258 ~~~~rr 263 (520)
T PRK12704 258 FDPIRR 263 (520)
T ss_pred CChhhH
Confidence 344443
No 42
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=76.19 E-value=71 Score=33.17 Aligned_cols=19 Identities=37% Similarity=0.627 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006690 120 RKQQEEADKEQRHREKEEA 138 (635)
Q Consensus 120 ~k~~~e~~ke~kr~~kee~ 138 (635)
.++++.+.|+.||+.|++.
T Consensus 188 EkeeKKk~K~aKkk~k~ek 206 (217)
T PF10147_consen 188 EKEEKKKKKEAKKKEKEEK 206 (217)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 43
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=75.15 E-value=1.5e+02 Score=33.75 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006690 113 ADIRKQIRKQQEEADKEQRHRE 134 (635)
Q Consensus 113 ~e~~k~~~k~~~e~~ke~kr~~ 134 (635)
..+++.+.+.+.++.+.+++++
T Consensus 234 ~~L~~~Ias~e~~aA~~re~~a 255 (420)
T COG4942 234 SRLKNEIASAEAAAAKAREAAA 255 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555544444443333
No 44
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=74.95 E-value=1.4e+02 Score=36.12 Aligned_cols=13 Identities=31% Similarity=0.463 Sum_probs=7.0
Q ss_pred chhhHHHHHHHhh
Q 006690 30 SEASIRVLVDSML 42 (635)
Q Consensus 30 ~~~~ir~~~~~~~ 42 (635)
.|.+.|+.|-.+.
T Consensus 440 ~E~ELRsqis~l~ 452 (697)
T PF09726_consen 440 SEQELRSQISSLT 452 (697)
T ss_pred hHHHHHHHHhhcc
Confidence 3556666655443
No 45
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=73.71 E-value=1.4e+02 Score=34.69 Aligned_cols=8 Identities=13% Similarity=0.260 Sum_probs=3.1
Q ss_pred CCCChHHH
Q 006690 513 SESDLPAI 520 (635)
Q Consensus 513 pd~dLp~L 520 (635)
.|.+...|
T Consensus 474 ~d~~~~~l 481 (514)
T TIGR03319 474 SDDQAVVL 481 (514)
T ss_pred ChHHHHHH
Confidence 33333333
No 46
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=72.85 E-value=1.7e+02 Score=35.21 Aligned_cols=16 Identities=19% Similarity=0.329 Sum_probs=7.1
Q ss_pred hhhHHHHHHHhhhhcc
Q 006690 31 EASIRVLVDSMLKKNG 46 (635)
Q Consensus 31 ~~~ir~~~~~~~~k~~ 46 (635)
+--+++-+..|.++|.
T Consensus 455 Er~lk~eL~qlr~ene 470 (697)
T PF09726_consen 455 ERSLKSELSQLRQENE 470 (697)
T ss_pred chHHHHHHHHHHHHHH
Confidence 3444455555444433
No 47
>KOG1363 consensus Predicted regulator of the ubiquitin pathway (contains UAS and UBX domains) [Signal transduction mechanisms]
Probab=71.42 E-value=17 Score=41.39 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=11.8
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHH
Q 006690 73 EKEKKRMDCEQQKEKLHSERELKRLQ 98 (635)
Q Consensus 73 ekE~~~~~~e~~ke~~~~eke~k~~e 98 (635)
+.++.+.+.....+.++..+.++++|
T Consensus 295 ~~~~~~~q~~~~~~~er~~r~~~~~e 320 (460)
T KOG1363|consen 295 EEEERRLQMRRSEQDEREARLALEQE 320 (460)
T ss_pred hhhhHHHhhcccchhHHHHHHHHHHh
Confidence 33444444444444444444444444
No 48
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=68.02 E-value=1.3e+02 Score=36.63 Aligned_cols=9 Identities=44% Similarity=0.575 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 006690 62 IKQLEKNKR 70 (635)
Q Consensus 62 ~k~~ek~~k 70 (635)
+..|+.+++
T Consensus 522 i~~l~~~~~ 530 (782)
T PRK00409 522 IASLEELER 530 (782)
T ss_pred HHHHHHHHH
Confidence 333333333
No 49
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=67.90 E-value=31 Score=39.70 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 006690 137 EAEMKKKLALQKQAS 151 (635)
Q Consensus 137 e~~~kk~~~~~kqa~ 151 (635)
|=.+++|+.+..-.-
T Consensus 449 ey~rrkqlklmed~d 463 (708)
T KOG3654|consen 449 EYERRKQLKLMEDLD 463 (708)
T ss_pred HHHHHHHHHHHHhhc
Confidence 334445555554444
No 50
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=67.27 E-value=3.6 Score=49.33 Aligned_cols=10 Identities=10% Similarity=0.674 Sum_probs=5.4
Q ss_pred chhhhhhhhh
Q 006690 217 SSWHRFGHFV 226 (635)
Q Consensus 217 ~~w~~l~~~~ 226 (635)
..|..+....
T Consensus 510 ~~~~~~~~~~ 519 (784)
T PF04931_consen 510 QAWKTLKKIL 519 (784)
T ss_pred HHHHHHHHHH
Confidence 4566665444
No 51
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=67.07 E-value=79 Score=32.44 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006690 115 IRKQIRKQQEEADKEQRHREKEEAEMK 141 (635)
Q Consensus 115 ~~k~~~k~~~e~~ke~kr~~kee~~~k 141 (635)
+-.|..|.++.+.||.||++|+|+...
T Consensus 194 mLqqkEkeekK~~KeaKrk~k~ekr~A 220 (225)
T KOG4848|consen 194 MLQQKEKEEKKAVKEAKRKEKQEKRFA 220 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566667777778888777776643
No 52
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=66.68 E-value=1.1e+02 Score=30.94 Aligned_cols=50 Identities=30% Similarity=0.303 Sum_probs=31.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006690 71 EVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRREKEEADIRKQIR 120 (635)
Q Consensus 71 ~~ekE~~~~~~e~~ke~~~~eke~k~~ee~~~ke~kr~ekee~e~~k~~~ 120 (635)
.++.+.++...++..+-++...++++..+.+.+...++-+.++++.+++.
T Consensus 14 ~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~i 63 (194)
T COG1390 14 EAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRI 63 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777777777666665555444444444443
No 53
>PF11208 DUF2992: Protein of unknown function (DUF2992); InterPro: IPR016787 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=65.31 E-value=26 Score=33.58 Aligned_cols=12 Identities=25% Similarity=0.329 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 006690 57 EEKILIKQLEKN 68 (635)
Q Consensus 57 ~ek~~~k~~ek~ 68 (635)
+=|+|+++.-|+
T Consensus 66 NPKR~qR~a~ke 77 (132)
T PF11208_consen 66 NPKRLQREAKKE 77 (132)
T ss_pred ChhHHHHHHHHh
Confidence 334455444443
No 54
>PLN03086 PRLI-interacting factor K; Provisional
Probab=64.12 E-value=46 Score=39.04 Aligned_cols=9 Identities=22% Similarity=0.305 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 006690 132 HREKEEAEM 140 (635)
Q Consensus 132 r~~kee~~~ 140 (635)
|.+.-+|.+
T Consensus 52 ~~~~~~~~~ 60 (567)
T PLN03086 52 RLDAIEAQI 60 (567)
T ss_pred HHHHHHHHH
Confidence 333333333
No 55
>PLN03086 PRLI-interacting factor K; Provisional
Probab=63.36 E-value=45 Score=39.09 Aligned_cols=14 Identities=14% Similarity=0.453 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 006690 103 RDERRREKEEADIR 116 (635)
Q Consensus 103 ke~kr~ekee~e~~ 116 (635)
|++.++.+|+-|+.
T Consensus 34 ~~~~~~~~~~~~~~ 47 (567)
T PLN03086 34 KEEAAKQREAIEAA 47 (567)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 56
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=62.71 E-value=1.1e+02 Score=30.99 Aligned_cols=15 Identities=7% Similarity=0.423 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhccc
Q 006690 146 LQKQASMMERFLKRS 160 (635)
Q Consensus 146 ~~kqa~~m~~Ffkk~ 160 (635)
...+..+++.|+..-
T Consensus 186 ~~~~~~lI~~~i~~l 200 (205)
T PRK06231 186 REDDDKLVDEFIREL 200 (205)
T ss_pred HHHHHHHHHHHHHHc
Confidence 344555666666543
No 57
>PF13904 DUF4207: Domain of unknown function (DUF4207)
Probab=62.32 E-value=2.1e+02 Score=30.18 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCcc
Q 006690 136 EEAEMKKKLALQKQASMMERFLKRSKILTS 165 (635)
Q Consensus 136 ee~~~kk~~~~~kqa~~m~~Ffkk~k~~~~ 165 (635)
.+.+.+++.+...=..-|.+--.||++...
T Consensus 213 ~e~~eRk~~ae~A~~~Wl~~~~~kpkpvp~ 242 (264)
T PF13904_consen 213 QEEQERKEQAEEAFQKWLKNVKNKPKPVPL 242 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCCCc
Confidence 444456666666667778887778776544
No 58
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=62.15 E-value=2e+02 Score=29.70 Aligned_cols=12 Identities=33% Similarity=0.448 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 006690 128 KEQRHREKEEAE 139 (635)
Q Consensus 128 ke~kr~~kee~~ 139 (635)
||++++-||+.+
T Consensus 200 keekK~~KeaKr 211 (225)
T KOG4848|consen 200 KEEKKAVKEAKR 211 (225)
T ss_pred HHHHHHHHHHHH
Confidence 444445554444
No 59
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=61.85 E-value=6.2 Score=47.92 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=9.1
Q ss_pred eEEEecCCCCCCceeeecC
Q 006690 298 QLLQFDKSHRPAFYGIWPK 316 (635)
Q Consensus 298 K~l~F~en~RPpy~GT~~k 316 (635)
-+|.|.-+..--|.|...+
T Consensus 1361 ~~~Dlct~~~D~~l~vIe~ 1379 (1516)
T KOG1832|consen 1361 CLLDLCTEPTDSFLGVIEM 1379 (1516)
T ss_pred chhhhhcCCccceEEEEec
Confidence 3444444444455555443
No 60
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.42 E-value=33 Score=38.60 Aligned_cols=11 Identities=18% Similarity=0.362 Sum_probs=5.1
Q ss_pred HHHHHHhhhhc
Q 006690 20 KASKKLGKVLS 30 (635)
Q Consensus 20 ~~~~~~~~~~~ 30 (635)
+.++-+-++++
T Consensus 336 k~me~iv~i~~ 346 (440)
T KOG2357|consen 336 KDMEDIVEILN 346 (440)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 61
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=61.11 E-value=45 Score=38.45 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006690 127 DKEQRHREKEEAEMKKKLALQK 148 (635)
Q Consensus 127 ~ke~kr~~kee~~~kk~~~~~k 148 (635)
+.+++|+.+++.+..+..+..|
T Consensus 309 eEEEkRr~kEeierrraeaAEK 330 (492)
T PF02029_consen 309 EEEEKRREKEEIERRRAEAAEK 330 (492)
T ss_pred hhhhhhhhhHHHHHhhhhhhHh
Confidence 3445666666655544444344
No 62
>KOG4363 consensus Putative growth response protein [Signal transduction mechanisms]
Probab=60.75 E-value=9.3 Score=40.28 Aligned_cols=22 Identities=18% Similarity=0.569 Sum_probs=19.9
Q ss_pred CCCCCCCCCCCCCCCCCccccc
Q 006690 323 PRHPLMKDPDLDYDIDSDEEWE 344 (635)
Q Consensus 323 ~r~Pf~kd~~lDYdyDSd~EWe 344 (635)
.++||.-..++||-|++.++|.
T Consensus 20 ~~pp~lst~sld~t~~~~~~~s 41 (270)
T KOG4363|consen 20 ERPPFLSTYSLDFTLPPNDPFS 41 (270)
T ss_pred ecCCccccccCCCcCCCCCccc
Confidence 3889998889999999999996
No 63
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=60.64 E-value=1.5e+02 Score=30.92 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q 006690 125 EADKEQRHREKEEAE 139 (635)
Q Consensus 125 e~~ke~kr~~kee~~ 139 (635)
+-++++|++.|++.+
T Consensus 186 ~kEkeeKKk~K~aKk 200 (217)
T PF10147_consen 186 EKEKEEKKKKKEAKK 200 (217)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555444
No 64
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=60.08 E-value=24 Score=39.92 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=8.0
Q ss_pred eEEEecCCCCCCceee
Q 006690 298 QLLQFDKSHRPAFYGI 313 (635)
Q Consensus 298 K~l~F~en~RPpy~GT 313 (635)
++..|.-+.+||-.||
T Consensus 423 ~~s~f~~~f~wpgqg~ 438 (506)
T KOG2507|consen 423 RVSSFANPFSWPGQGT 438 (506)
T ss_pred HHHHHhccCCCCCCCc
Confidence 4444555555555554
No 65
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=59.73 E-value=12 Score=39.87 Aligned_cols=10 Identities=10% Similarity=0.438 Sum_probs=4.9
Q ss_pred cceEEEecCC
Q 006690 296 WKQLLQFDKS 305 (635)
Q Consensus 296 ~~K~l~F~en 305 (635)
+.|.|....+
T Consensus 198 rrKg~ky~k~ 207 (314)
T PF06524_consen 198 RRKGFKYEKG 207 (314)
T ss_pred hhcccccccC
Confidence 3455555544
No 66
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=58.09 E-value=2e+02 Score=28.45 Aligned_cols=15 Identities=0% Similarity=-0.155 Sum_probs=8.9
Q ss_pred HHHHHHHHHHhhccc
Q 006690 146 LQKQASMMERFLKRS 160 (635)
Q Consensus 146 ~~kqa~~m~~Ffkk~ 160 (635)
...+..+++.|+.+-
T Consensus 162 ~~~~~~lid~~i~~l 176 (184)
T CHL00019 162 NELHLRTINANIGLL 176 (184)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445556666666554
No 67
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=57.66 E-value=2.7e+02 Score=33.90 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 006690 61 LIKQLEKNKREVEK 74 (635)
Q Consensus 61 ~~k~~ek~~k~~ek 74 (635)
++..|+..+++.+.
T Consensus 516 li~~L~~~~~~~e~ 529 (771)
T TIGR01069 516 LIEKLSALEKELEQ 529 (771)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444443333
No 68
>PF04747 DUF612: Protein of unknown function, DUF612; InterPro: IPR006836 This family includes several uncharacterised proteins from Caenorhabditis elegans.
Probab=56.54 E-value=91 Score=35.02 Aligned_cols=13 Identities=8% Similarity=0.133 Sum_probs=8.6
Q ss_pred ChHHHHHHHhcCC
Q 006690 516 DLPAIVSVIQSCS 528 (635)
Q Consensus 516 dLp~Lv~~I~gs~ 528 (635)
|-.+|++||....
T Consensus 453 DsMDFLDFVTaKp 465 (510)
T PF04747_consen 453 DSMDFLDFVTAKP 465 (510)
T ss_pred ccchHHhhccCCc
Confidence 3667777777554
No 69
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.73 E-value=1e+02 Score=33.57 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=10.9
Q ss_pred chhhHHHHHHHhhhhcchh
Q 006690 30 SEASIRVLVDSMLKKNGAE 48 (635)
Q Consensus 30 ~~~~ir~~~~~~~~k~~~~ 48 (635)
.+-+||.-|-.+.-|...+
T Consensus 70 kEV~iRkrv~~i~Nk~e~d 88 (309)
T TIGR00570 70 KEVDIRKRVLKIYNKREED 88 (309)
T ss_pred HHHHHHHHHHHHHccchhc
Confidence 4556666666665554433
No 70
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=55.47 E-value=5.2e+02 Score=32.53 Aligned_cols=8 Identities=38% Similarity=0.480 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 006690 18 LMKASKKL 25 (635)
Q Consensus 18 ~~~~~~~~ 25 (635)
+.++..-|
T Consensus 732 ~~eak~~l 739 (1018)
T KOG2002|consen 732 LQEAKEAL 739 (1018)
T ss_pred HHHHHHHH
Confidence 33333333
No 71
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=54.66 E-value=4e+02 Score=30.91 Aligned_cols=13 Identities=31% Similarity=0.557 Sum_probs=8.4
Q ss_pred CCCCCCCCCCCCc
Q 006690 328 MKDPDLDYDIDSD 340 (635)
Q Consensus 328 ~kd~~lDYdyDSd 340 (635)
++-.+|||-+-.+
T Consensus 405 Ar~SGlDYA~mTG 417 (630)
T KOG0742|consen 405 ARHSGLDYAIMTG 417 (630)
T ss_pred HhhcCCceehhcC
Confidence 3446888877654
No 72
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=54.34 E-value=2.1e+02 Score=27.92 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhhccc
Q 006690 146 LQKQASMMERFLKRS 160 (635)
Q Consensus 146 ~~kqa~~m~~Ffkk~ 160 (635)
...+..+++.|+.+-
T Consensus 157 ~~~~~~li~~~i~~l 171 (174)
T PRK07352 157 EDAQQRLIDRSIANL 171 (174)
T ss_pred HHHHHHHHHHHHHhh
Confidence 344556666666543
No 73
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=54.28 E-value=77 Score=34.90 Aligned_cols=11 Identities=36% Similarity=0.561 Sum_probs=5.4
Q ss_pred HHHHHHHHhhc
Q 006690 148 KQASMMERFLK 158 (635)
Q Consensus 148 kqa~~m~~Ffk 158 (635)
+++++..+|-.
T Consensus 163 r~~m~~~~~~~ 173 (361)
T KOG3634|consen 163 RQEMMAGRFAE 173 (361)
T ss_pred HHHHHhcCcCc
Confidence 34455555544
No 74
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=54.14 E-value=1.8e+02 Score=30.15 Aligned_cols=13 Identities=23% Similarity=0.486 Sum_probs=7.1
Q ss_pred HHHHHHHHhhccc
Q 006690 148 KQASMMERFLKRS 160 (635)
Q Consensus 148 kqa~~m~~Ffkk~ 160 (635)
.+..++++|+.+-
T Consensus 145 ~~~~lid~~i~~l 157 (246)
T TIGR03321 145 LEERMVDVFVQRL 157 (246)
T ss_pred HHHHHHHHHHHHh
Confidence 3455666666544
No 75
>KOG2357 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.10 E-value=70 Score=36.17 Aligned_cols=10 Identities=30% Similarity=0.534 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 006690 126 ADKEQRHREK 135 (635)
Q Consensus 126 ~~ke~kr~~k 135 (635)
..|+++|+.|
T Consensus 419 EakerkR~~K 428 (440)
T KOG2357|consen 419 EAKERKRQAK 428 (440)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 76
>PLN02372 violaxanthin de-epoxidase
Probab=53.26 E-value=1.8e+02 Score=33.02 Aligned_cols=43 Identities=40% Similarity=0.609 Sum_probs=26.5
Q ss_pred hhhhHHHHHHHHHhhhhchhhHH---------HHHHHhhhhcchhHHHHHHHHHHHHHHHHH
Q 006690 13 SFINDLMKASKKLGKVLSEASIR---------VLVDSMLKKNGAEIVEKDAKREEKILIKQL 65 (635)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~ir---------~~~~~~~~k~~~~~~~k~~~~~ek~~~k~~ 65 (635)
+++-.|.+|++|.|--++. =|| -|| ++.+|+++.-||.+.|+.
T Consensus 330 ~~~p~L~~Aa~kvG~df~~-F~~tDNsCgpep~l~---------~~l~~~~e~~e~~i~~e~ 381 (455)
T PLN02372 330 SIVPELEKAAKKVGRDFSD-FVRTDNTCGPEPPLL---------ERLEKDVEEGEKTIVKEA 381 (455)
T ss_pred hhhHHHHHHHHHcCCCHHH-heeeCCCCCCCchHH---------HHHHHHHHHHHHHHHHHH
Confidence 4678899999998866542 111 133 455666666666666554
No 77
>PF12157 DUF3591: Protein of unknown function (DUF3591); InterPro: IPR022591 This functionally uncharacterised domain is found centrally in the eukaryotic transcription initiation factor TFIID subunit 1.
Probab=52.44 E-value=16 Score=41.53 Aligned_cols=60 Identities=23% Similarity=0.456 Sum_probs=41.5
Q ss_pred CCCCChHHHHHHHhcCCCcHHHHHHHHHHhCCCCcHHHHHHHHHHhhhccCC---CCceEecH
Q 006690 512 ISESDLPAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNFA---ENRWQVKR 571 (635)
Q Consensus 512 ipd~dLp~Lv~~I~gs~~Sk~~LVEilqk~fP~vSK~~IKNTIkEIAtr~~~---~krW~VK~ 571 (635)
+...-|..++.-+-.......--|+.+.+.||+.|-.+|+..+++.|+|... .+-|++|+
T Consensus 238 ~~knrL~~~iyRlf~~~~~~ri~~~di~~~Fp~~se~~iRkrLKe~~~~~R~g~~~~~W~lk~ 300 (457)
T PF12157_consen 238 FSKNRLKMIIYRLFNKSQPRRIKVDDIKKHFPDQSESQIRKRLKEFADFQRTGDDSGWWVLKP 300 (457)
T ss_pred HHHHHHHHHHHHHHhhccCCccCHHHHHHhCCCCcHHHHHHHHHHHHhccCCCCCCCeEEECC
Confidence 3444455555333332222223457788899999999999999999999543 67899887
No 78
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=52.21 E-value=8.2 Score=41.77 Aligned_cols=13 Identities=54% Similarity=0.849 Sum_probs=8.6
Q ss_pred CCCCCCCCccccc
Q 006690 332 DLDYDIDSDEEWE 344 (635)
Q Consensus 332 ~lDYdyDSd~EWe 344 (635)
+.+-+-++|.+|+
T Consensus 90 ~~~~~~~~d~ewe 102 (324)
T PF05285_consen 90 GEEEDDDDDEEWE 102 (324)
T ss_pred cccCccccccccc
Confidence 4456667777785
No 79
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=50.57 E-value=3.1e+02 Score=28.73 Aligned_cols=13 Identities=0% Similarity=-0.054 Sum_probs=3.9
Q ss_pred HHHHHHhhccccC
Q 006690 150 ASMMERFLKRSKI 162 (635)
Q Consensus 150 a~~m~~Ffkk~k~ 162 (635)
...+..|+..+.+
T Consensus 123 k~~L~~~~~~~~~ 135 (246)
T PF00769_consen 123 KEELLEVMSAPPP 135 (246)
T ss_dssp HHHH----HTTS-
T ss_pred HHHHHHHHhcccc
Confidence 3445555655543
No 80
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=49.78 E-value=2.5e+02 Score=34.09 Aligned_cols=33 Identities=36% Similarity=0.385 Sum_probs=20.4
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHH
Q 006690 52 KDAKREEKI-LIKQLEKNKREVEKEKKRMDCEQQ 84 (635)
Q Consensus 52 k~~~~~ek~-~~k~~ek~~k~~ekE~~~~~~e~~ 84 (635)
++.+-+|.+ +++|--.+++..+||+.|.+.+++
T Consensus 781 ~d~k~eemrflRrQeLreLR~LQkeE~R~qqqL~ 814 (1187)
T KOG0579|consen 781 KDDKDEEMRFLRRQELRELRRLQKEEARQQQQLQ 814 (1187)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444544 666777777777777777665553
No 81
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=49.50 E-value=2.7e+02 Score=27.42 Aligned_cols=78 Identities=14% Similarity=0.121 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 006690 45 NGAEIVEKDAKREEKILIKQLEKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRR-EKEEADIRKQIRKQ 122 (635)
Q Consensus 45 ~~~~~~~k~~~~~ek~~~k~~ek~~k~~ekE~~~~~~e~~ke~~~~eke~k~~ee~~~ke~kr~-ekee~e~~k~~~k~ 122 (635)
+.+++..++++.-....+.+|.+.+.+.+.-.+.-+.+..+...+...+++.+-++.....++. +.|...+..+.+.+
T Consensus 45 d~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~~A~~~Ie~Ek~~Al~elr~e 123 (154)
T PRK06568 45 LKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQLIQNQKSTASKELQDE 123 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 82
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=49.47 E-value=3e+02 Score=27.98 Aligned_cols=11 Identities=0% Similarity=0.175 Sum_probs=4.8
Q ss_pred HHHHHHHHHhh
Q 006690 147 QKQASMMERFL 157 (635)
Q Consensus 147 ~kqa~~m~~Ff 157 (635)
+-...+|.+-+
T Consensus 174 ~iA~kiL~k~l 184 (205)
T PRK06231 174 LAAEELIKKKV 184 (205)
T ss_pred HHHHHHHHhhC
Confidence 33344555433
No 83
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.64 E-value=15 Score=41.21 Aligned_cols=61 Identities=18% Similarity=0.383 Sum_probs=28.7
Q ss_pred cCCCCCCCCC--CCCCCCCCCccccccccCCCCCCCCCCCCCcccCCCCCCCcccCCCccccCCCCCC
Q 006690 321 VGPRHPLMKD--PDLDYDIDSDEEWEEEEPGESLSDCEKDGDEEGCSKADDEDESEDGFFVPDGYLSE 386 (635)
Q Consensus 321 v~~r~Pf~kd--~~lDYdyDSd~EWeeee~GEdl~~~e~d~e~eed~~~~ded~~~d~f~v~dg~l~d 386 (635)
+.+-.||+.. .+|+-.++-..-..|++ |+|. |.++++| ..+++++|.|.+.+.|.|..+-+
T Consensus 247 ~~~~tp~s~~r~~~~n~sv~~~ss~~edD-~Ddd-d~dDdee---N~ddd~~d~d~e~~~v~dN~~p~ 309 (514)
T KOG3130|consen 247 VASSTPFSGQRNSQLNCSVNGSSSYHEDD-DDDD-DDDDDEE---NIDDDDGDNDHEALGVGDNSIPT 309 (514)
T ss_pred CCCcCcchhhhhhcccccccCCCCccccc-cccc-cccchhh---cccccccccchhhhccCCCcCcc
Confidence 5677889865 36666665443333322 2111 1111111 11113444556667777665543
No 84
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=48.48 E-value=2.7e+02 Score=27.23 Aligned_cols=79 Identities=15% Similarity=0.044 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006690 45 NGAEIVEKDAKREEKILIKQLEKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRREKEEADIRKQIRKQQ 123 (635)
Q Consensus 45 ~~~~~~~k~~~~~ek~~~k~~ek~~k~~ekE~~~~~~e~~ke~~~~eke~k~~ee~~~ke~kr~ekee~e~~k~~~k~~ 123 (635)
+.++....+++.-....+.++...+++...-....+.+.+++..+...+++.+-++.....+..-..|.+......|+|
T Consensus 63 ~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~Ek~~a~~elk~e 141 (167)
T PRK08475 63 EEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELMEFEVRKMEREVVEE 141 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 85
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=48.22 E-value=21 Score=45.27 Aligned_cols=59 Identities=22% Similarity=0.419 Sum_probs=43.8
Q ss_pred CChHHHHHHHhcCCC--cHHHHHHHHHHhCCCCcHHHHHHHHHHhhhccC---CCCceEecHhH
Q 006690 515 SDLPAIVSVIQSCST--NMNKILEALQQKFPSISRAQLRNKVREISDFNF---AENRWQVKREI 573 (635)
Q Consensus 515 ~dLp~Lv~~I~gs~~--Sk~~LVEilqk~fP~vSK~~IKNTIkEIAtr~~---~~krW~VK~Ev 573 (635)
.=|..||.-+-.... ...--+..|.+.||+++=.+|+..++++|+|.. .++.|++|++.
T Consensus 696 nrLkv~IYRlF~~s~~g~r~I~id~lsk~Fp~~se~siRKrLKecad~kR~G~~~~~W~LK~df 759 (1563)
T KOG0008|consen 696 NRLKVFIYRLFWKSDSGPRRIRIDDLSKAFPDQSESSIRKRLKECADFKRDGMGKNYWVLKPDF 759 (1563)
T ss_pred HHHHHHHHHHHHhcCCCCcceehhHHHhhCcccchHHHHHHHHHHHHHhhcCCCCCeeEecccc
Confidence 345666644443332 333567889999999999999999999999953 57899999853
No 86
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=47.74 E-value=2.8e+02 Score=27.12 Aligned_cols=12 Identities=17% Similarity=0.470 Sum_probs=6.5
Q ss_pred HHHHHHHHhhcc
Q 006690 148 KQASMMERFLKR 159 (635)
Q Consensus 148 kqa~~m~~Ffkk 159 (635)
.+..+++.|++.
T Consensus 158 ~~~~li~~~i~~ 169 (175)
T PRK14472 158 KQKKVVDSMIQD 169 (175)
T ss_pred HHHHHHHHHHHH
Confidence 345566666544
No 87
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=46.69 E-value=18 Score=37.23 Aligned_cols=9 Identities=22% Similarity=0.671 Sum_probs=4.8
Q ss_pred CCCCCCCCC
Q 006690 381 DGYLSEDEG 389 (635)
Q Consensus 381 dg~l~d~e~ 389 (635)
..|++++|+
T Consensus 211 ~~YFDnGed 219 (233)
T PF11705_consen 211 ENYFDNGED 219 (233)
T ss_pred hccCCCCCc
Confidence 446665554
No 88
>PF05917 DUF874: Helicobacter pylori protein of unknown function (DUF874); InterPro: IPR008592 This family consists of several hypothetical proteins specific to Helicobacter pylori. The function of this family is unknown.
Probab=46.38 E-value=3.1e+02 Score=29.95 Aligned_cols=9 Identities=11% Similarity=0.298 Sum_probs=5.5
Q ss_pred HHHhhcccc
Q 006690 153 MERFLKRSK 161 (635)
Q Consensus 153 m~~Ffkk~k 161 (635)
-+.||-+..
T Consensus 225 H~QfFIkK~ 233 (398)
T PF05917_consen 225 HGQFFIKKG 233 (398)
T ss_pred cceeeeeec
Confidence 566776553
No 89
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=45.06 E-value=3.5e+02 Score=27.49 Aligned_cols=83 Identities=18% Similarity=0.292 Sum_probs=38.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006690 77 KRMDCEQQKEKLHSERELKRLQEEAERDERRREKEEADIRKQIRKQQEEADKEQRHREKEEAEMKKKLALQKQASMMERF 156 (635)
Q Consensus 77 ~~~~~e~~ke~~~~eke~k~~ee~~~ke~kr~ekee~e~~k~~~k~~~e~~ke~kr~~kee~~~kk~~~~~kqa~~m~~F 156 (635)
+...++++.+.++...++..+-++...+.+++. +...+..+.+.+++++..+.+-.-.+.-.-++.........+..|
T Consensus 9 ~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~--~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~l~~~ 86 (194)
T COG1390 9 KKILREAEEEAEEILEEAREEAEKIKEEAKREA--EEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEILESV 86 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443333333333221 112223345555566655555444422223333344556678888
Q ss_pred hcccc
Q 006690 157 LKRSK 161 (635)
Q Consensus 157 fkk~k 161 (635)
|....
T Consensus 87 ~~~~~ 91 (194)
T COG1390 87 FEAVE 91 (194)
T ss_pred HHHHH
Confidence 87664
No 90
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=45.04 E-value=3.3e+02 Score=29.55 Aligned_cols=17 Identities=35% Similarity=0.323 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006690 59 KILIKQLEKNKREVEKE 75 (635)
Q Consensus 59 k~~~k~~ek~~k~~ekE 75 (635)
-+.-|-||..+.++..|
T Consensus 136 VLVgKtlEQAl~EV~EE 152 (291)
T PF06098_consen 136 VLVGKTLEQALMEVMEE 152 (291)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555544444
No 91
>PF04747 DUF612: Protein of unknown function, DUF612; InterPro: IPR006836 This family includes several uncharacterised proteins from Caenorhabditis elegans.
Probab=44.74 E-value=2.5e+02 Score=31.74 Aligned_cols=20 Identities=50% Similarity=0.597 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006690 126 ADKEQRHREKEEAEMKKKLA 145 (635)
Q Consensus 126 ~~ke~kr~~kee~~~kk~~~ 145 (635)
+++.|+..++.+++|++-++
T Consensus 126 qe~~qke~e~kea~lkklq~ 145 (510)
T PF04747_consen 126 QEKIQKEQEKKEAELKKLQA 145 (510)
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 33444444444444444333
No 92
>PF03879 Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is involved in nucleolar integrity and is required for processing pre-rRNA for the 60S ribosome subunit. In Saccharomyces cerevisiae, this protein is conserved and contributes to compartmentalisation of nucleolar constituents []. Cgr1 is a small hydrophilic protein and members of this family are coiled-coil proteins []. Its primary role appears to be in ribosome biogenesis [, ]. Expression of CGR1 is also associated with a cessation of yeast cell growth, which is a prerequisite for germination in this organism [].
Probab=43.17 E-value=2.8e+02 Score=25.92 Aligned_cols=20 Identities=35% Similarity=0.323 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006690 51 EKDAKREEKILIKQLEKNKR 70 (635)
Q Consensus 51 ~k~~~~~ek~~~k~~ek~~k 70 (635)
.+.+++.+....|+++++++
T Consensus 35 kr~~~R~~~~~~K~~ekElK 54 (108)
T PF03879_consen 35 KRMEKRLELKAIKEKEKELK 54 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666555
No 93
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=42.83 E-value=5.5e+02 Score=32.24 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=8.0
Q ss_pred hHHHHHHHhhhhcc
Q 006690 33 SIRVLVDSMLKKNG 46 (635)
Q Consensus 33 ~ir~~~~~~~~k~~ 46 (635)
..|+||++..|-=.
T Consensus 1030 r~~el~~rq~~el~ 1043 (1189)
T KOG1265|consen 1030 RVRELVNRQTQELL 1043 (1189)
T ss_pred hHHHHHHHHHHHHH
Confidence 46677776444433
No 94
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=41.26 E-value=2.7e+02 Score=31.43 Aligned_cols=24 Identities=33% Similarity=0.274 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 006690 128 KEQRHREKEEAEMKKKLALQKQAS 151 (635)
Q Consensus 128 ke~kr~~kee~~~kk~~~~~kqa~ 151 (635)
||+...+||=++.+++.++.+.+.
T Consensus 356 kerd~L~keLeekkreleql~~q~ 379 (442)
T PF06637_consen 356 KERDSLAKELEEKKRELEQLKMQL 379 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555655555443
No 95
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=41.01 E-value=3.6e+02 Score=27.17 Aligned_cols=16 Identities=19% Similarity=0.276 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhh
Q 006690 142 KKLALQKQASMMERFL 157 (635)
Q Consensus 142 k~~~~~kqa~~m~~Ff 157 (635)
++.-...++.+++.|.
T Consensus 73 r~~ll~~k~~i~~~~~ 88 (198)
T PRK01558 73 RDLLISFEKSIKSLFK 88 (198)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333445566666663
No 96
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=39.77 E-value=3.8e+02 Score=26.42 Aligned_cols=9 Identities=11% Similarity=0.401 Sum_probs=3.7
Q ss_pred HHHHHhhcc
Q 006690 151 SMMERFLKR 159 (635)
Q Consensus 151 ~~m~~Ffkk 159 (635)
.++...|..
T Consensus 81 el~~~v~~~ 89 (198)
T PRK03963 81 ELISEVLEA 89 (198)
T ss_pred HHHHHHHHH
Confidence 344444433
No 97
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=39.71 E-value=3.8e+02 Score=26.31 Aligned_cols=14 Identities=29% Similarity=0.719 Sum_probs=7.8
Q ss_pred HHHHHHHHHhhccc
Q 006690 147 QKQASMMERFLKRS 160 (635)
Q Consensus 147 ~kqa~~m~~Ffkk~ 160 (635)
..+..+++.|++..
T Consensus 157 ~~~~~lI~~~i~~~ 170 (173)
T PRK13453 157 QDQKALVDKYLKEA 170 (173)
T ss_pred HHHHHHHHHHHHhh
Confidence 34555666666543
No 98
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=39.52 E-value=6.2e+02 Score=28.77 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 006690 127 DKEQRHREKEEAEMKKKLALQ 147 (635)
Q Consensus 127 ~ke~kr~~kee~~~kk~~~~~ 147 (635)
+||=+.+++|.+.++-+.++.
T Consensus 362 ~keLeekkreleql~~q~~v~ 382 (442)
T PF06637_consen 362 AKELEEKKRELEQLKMQLAVK 382 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344444555666666666643
No 99
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=39.17 E-value=3.7e+02 Score=26.13 Aligned_cols=14 Identities=7% Similarity=0.152 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhhcc
Q 006690 146 LQKQASMMERFLKR 159 (635)
Q Consensus 146 ~~kqa~~m~~Ffkk 159 (635)
...+..++..|++.
T Consensus 148 ~~~~~~lid~~i~~ 161 (167)
T PRK14475 148 GAKSDPLVDAAIGQ 161 (167)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455666666643
No 100
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=38.95 E-value=3.5e+02 Score=25.74 Aligned_cols=78 Identities=13% Similarity=0.156 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 006690 45 NGAEIVEKDAKREEKILIKQLEKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRR-EKEEADIRKQIRKQ 122 (635)
Q Consensus 45 ~~~~~~~k~~~~~ek~~~k~~ek~~k~~ekE~~~~~~e~~ke~~~~eke~k~~ee~~~ke~kr~-ekee~e~~k~~~k~ 122 (635)
..++....+++.-.......+...+.++++.......++.++.++...+++.+-+....+.+.. +.+...+....+.+
T Consensus 48 ~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~l~~q 126 (141)
T PRK08476 48 EKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELKEQLLSQ 126 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 101
>KOG3634 consensus Troponin [Cytoskeleton]
Probab=38.72 E-value=2e+02 Score=31.86 Aligned_cols=11 Identities=18% Similarity=0.271 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 006690 132 HREKEEAEMKK 142 (635)
Q Consensus 132 r~~kee~~~kk 142 (635)
+..+++++.++
T Consensus 153 r~r~~Eek~Rr 163 (361)
T KOG3634|consen 153 RIRLEEEKSRR 163 (361)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 102
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=38.10 E-value=6.5e+02 Score=28.62 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhcccc
Q 006690 147 QKQASMMERFLKRSK 161 (635)
Q Consensus 147 ~kqa~~m~~Ffkk~k 161 (635)
..+..+++.|+.+-.
T Consensus 141 ~~~~~lId~~i~~l~ 155 (445)
T PRK13428 141 AQQSATVDRFLDELD 155 (445)
T ss_pred HHHHHHHHHHHHHhh
Confidence 445788999997664
No 103
>PF06886 TPX2: Targeting protein for Xklp2 (TPX2); InterPro: IPR009675 This family represents a conserved region approximately 60 residues long within the eukaryotic targeting protein for Xklp2 (TPX2). Xklp2 is a kinesin-like protein localised on centrosomes throughout the cell cycle and on spindle pole microtubules during metaphase. In Xenopus, it has been shown that Xklp2 protein is required for centrosome separation and maintenance of spindle bi-polarity []. TPX2 is a microtubule-associated protein that mediates the binding of the C-terminal domain of Xklp2 to microtubules. It is phosphorylated during mitosis in a microtubule-dependent way [].
Probab=37.80 E-value=1.9e+02 Score=23.95 Aligned_cols=16 Identities=38% Similarity=0.696 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 006690 128 KEQRHREKEEAEMKKK 143 (635)
Q Consensus 128 ke~kr~~kee~~~kk~ 143 (635)
.+.++++.++++.++-
T Consensus 31 ~e~~~~e~ee~eik~L 46 (57)
T PF06886_consen 31 REAKQKEEEEEEIKQL 46 (57)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 104
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins. They function as nuclear chaperones which are needed for the proper assembly of nucleosomes and the attainment of proper higher order chromatin structures [].; GO: 0003676 nucleic acid binding; PDB: 2P1B_E 1XB9_I 1XE0_C 1NLQ_A 2VTX_E 1K5J_D 1EJY_N 1EE5_B 3T30_J.
Probab=37.71 E-value=9.4 Score=37.08 Aligned_cols=12 Identities=50% Similarity=0.650 Sum_probs=0.9
Q ss_pred CCCCCccccccc
Q 006690 335 YDIDSDEEWEEE 346 (635)
Q Consensus 335 YdyDSd~EWeee 346 (635)
+.+..|++|+++
T Consensus 107 ~~~~~d~~~~e~ 118 (149)
T PF03066_consen 107 VAMEEDEESEEE 118 (149)
T ss_dssp EE----------
T ss_pred cccccccccccc
Confidence 455566677653
No 105
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=37.00 E-value=26 Score=42.97 Aligned_cols=11 Identities=9% Similarity=-0.163 Sum_probs=4.4
Q ss_pred EEecCCCCCCc
Q 006690 300 LQFDKSHRPAF 310 (635)
Q Consensus 300 l~F~en~RPpy 310 (635)
|---|+.||-.
T Consensus 1374 l~vIe~~~~~d 1384 (1516)
T KOG1832|consen 1374 LGVIEMEDQED 1384 (1516)
T ss_pred EEEEeccChhh
Confidence 33334444443
No 106
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=36.39 E-value=7.1e+02 Score=29.93 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=19.4
Q ss_pred CChhhhhHHHHHHHHHhhh---hchhhHHHHH
Q 006690 10 SDPSFINDLMKASKKLGKV---LSEASIRVLV 38 (635)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~---~~~~~ir~~~ 38 (635)
||..|.+-|.++-.+++.. .+...|-.+|
T Consensus 353 AY~~yk~kl~~vEr~~~~~g~~~d~~rika~V 384 (652)
T COG2433 353 AYLAYKPKLEKVERKLPELGIWKDVERIKALV 384 (652)
T ss_pred HHHHHHHHHHHHHHhcccccchhhHHHHHHHe
Confidence 3555777888887777776 6666665543
No 107
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=36.23 E-value=4e+02 Score=25.55 Aligned_cols=14 Identities=7% Similarity=0.425 Sum_probs=7.8
Q ss_pred HHHHHHHHHHhhcc
Q 006690 146 LQKQASMMERFLKR 159 (635)
Q Consensus 146 ~~kqa~~m~~Ffkk 159 (635)
...+..++..|+.+
T Consensus 143 ~~~~~~li~~~i~~ 156 (159)
T PRK13461 143 ESEHRRLIKDFISK 156 (159)
T ss_pred HHHHHHHHHHHHhH
Confidence 34455666666654
No 108
>PRK12705 hypothetical protein; Provisional
Probab=36.13 E-value=7.7e+02 Score=28.86 Aligned_cols=10 Identities=10% Similarity=0.355 Sum_probs=4.0
Q ss_pred CCCCChHHHH
Q 006690 512 ISESDLPAIV 521 (635)
Q Consensus 512 ipd~dLp~Lv 521 (635)
|.|.+...|.
T Consensus 467 v~D~~~~~la 476 (508)
T PRK12705 467 VSDAQATLLA 476 (508)
T ss_pred CChHHHHHHH
Confidence 3344444433
No 109
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=35.90 E-value=4.1e+02 Score=25.60 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhhccc
Q 006690 143 KLALQKQASMMERFLKRS 160 (635)
Q Consensus 143 ~~~~~kqa~~m~~Ffkk~ 160 (635)
......+..+++.|+.+.
T Consensus 143 ~l~~~~~~~li~~~i~~~ 160 (164)
T PRK14473 143 ELQARGHDALIAESLAAL 160 (164)
T ss_pred HcCHHHHHHHHHHHHHhc
Confidence 333455677777777655
No 110
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=35.36 E-value=28 Score=41.99 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=7.8
Q ss_pred hhhhhhccccccccccc
Q 006690 222 FGHFVRSNRNQHWGIRR 238 (635)
Q Consensus 222 l~~~~r~~r~~~~g~r~ 238 (635)
||.|.=+|.+++.+.|+
T Consensus 749 LDrF~yRnPK~~t~~~G 765 (988)
T KOG2038|consen 749 LDRFAYRNPKQVTKARG 765 (988)
T ss_pred HHHHHhcCcccccccCC
Confidence 44444444454444443
No 111
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=35.30 E-value=1.1e+02 Score=28.31 Aligned_cols=6 Identities=67% Similarity=0.833 Sum_probs=2.3
Q ss_pred HHHHHH
Q 006690 148 KQASMM 153 (635)
Q Consensus 148 kqa~~m 153 (635)
+|+++|
T Consensus 79 ~~q~Lm 84 (121)
T PF10669_consen 79 KQQSLM 84 (121)
T ss_pred HHHHHH
Confidence 333333
No 112
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=35.23 E-value=1.1e+03 Score=30.50 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=12.5
Q ss_pred ceEEEec-CCCCCCceeeec
Q 006690 297 KQLLQFD-KSHRPAFYGIWP 315 (635)
Q Consensus 297 ~K~l~F~-en~RPpy~GT~~ 315 (635)
.-|+++. +-+||+||-...
T Consensus 697 fDLv~~~d~~~r~aFYfaLr 716 (1293)
T KOG0996|consen 697 FDLVKCKDEKFRPAFYFALR 716 (1293)
T ss_pred hhhhccCCHHHHHHHHHHHh
Confidence 4566665 568888886544
No 113
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=34.81 E-value=5.8e+02 Score=28.21 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 006690 128 KEQRHREKEEAEMKKKLALQKQASMMERFLKRSK 161 (635)
Q Consensus 128 ke~kr~~kee~~~kk~~~~~kqa~~m~~Ffkk~k 161 (635)
.|.++.+...|.++....-.-+.+.|.+|++..+
T Consensus 203 ~ElR~l~~kka~~q~~e~w~~~~kk~s~~IRTKT 236 (340)
T KOG3756|consen 203 TELRLLEQKKALAQLFEEWNEHNKKISNYIRTKT 236 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC
Confidence 4444444445555444444445566777776553
No 114
>COG5179 TAF1 Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=33.88 E-value=40 Score=39.89 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=44.9
Q ss_pred CChHHHHHHHhcCCCcHHHHHHHHHHhCCCCcHHHHHHHHHHhhhccC--CCCceEecHh
Q 006690 515 SDLPAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDFNF--AENRWQVKRE 572 (635)
Q Consensus 515 ~dLp~Lv~~I~gs~~Sk~~LVEilqk~fP~vSK~~IKNTIkEIAtr~~--~~krW~VK~E 572 (635)
.-|.+++.-|-++.-+.+..|.-|-++||..+--+++..|+|++.|.+ .++.|++|+.
T Consensus 600 nRLKm~~fRl~n~~~~g~l~I~ql~khFpdq~egq~Rq~lKEfm~y~kdGp~g~W~Lk~~ 659 (968)
T COG5179 600 NRLKMAAFRLFNSKEGGSLRISQLDKHFPDQSEGQKRQWLKEFMDYVKDGPDGVWVLKPS 659 (968)
T ss_pred hhHHHHHHHHhhcCCCCceeeehhhhhCCCcchhHHHHHHHHHHHHhhcCCCceEEeccc
Confidence 346677766655555555566778899999999999999999999953 4589999874
No 115
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=33.14 E-value=4.3e+02 Score=25.00 Aligned_cols=8 Identities=0% Similarity=0.713 Sum_probs=3.5
Q ss_pred HHHHHHhh
Q 006690 150 ASMMERFL 157 (635)
Q Consensus 150 a~~m~~Ff 157 (635)
..++..|+
T Consensus 146 ~~~i~~~i 153 (156)
T PRK05759 146 SDLIDKLI 153 (156)
T ss_pred HHHHHHHH
Confidence 34444444
No 116
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=32.05 E-value=1.2e+02 Score=34.61 Aligned_cols=7 Identities=14% Similarity=0.012 Sum_probs=3.5
Q ss_pred hccccCC
Q 006690 157 LKRSKIL 163 (635)
Q Consensus 157 fkk~k~~ 163 (635)
|.|+.++
T Consensus 284 f~k~v~t 290 (506)
T KOG2507|consen 284 FTKSVDT 290 (506)
T ss_pred hcCccch
Confidence 5555443
No 117
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=31.89 E-value=4.9e+02 Score=25.38 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhhcc
Q 006690 146 LQKQASMMERFLKR 159 (635)
Q Consensus 146 ~~kqa~~m~~Ffkk 159 (635)
...+..+++.|+.+
T Consensus 154 ~~~~~~lid~~i~~ 167 (173)
T PRK13460 154 KEDYKAFIETELAK 167 (173)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455666666654
No 118
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=31.64 E-value=7e+02 Score=27.02 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=14.2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006690 76 KKRMDCEQQKEKLHSERELKRLQEEAER 103 (635)
Q Consensus 76 ~~~~~~e~~ke~~~~eke~k~~ee~~~k 103 (635)
.+|++.++..+..+.+...+.+++-..|
T Consensus 117 RkR~~~e~~~qr~~n~e~lk~QEes~~r 144 (276)
T PF12037_consen 117 RKRYQDELEQQRRRNEELLKMQEESVIR 144 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444455555555555555444
No 119
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=31.63 E-value=7e+02 Score=27.02 Aligned_cols=8 Identities=50% Similarity=0.941 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 006690 136 EEAEMKKK 143 (635)
Q Consensus 136 ee~~~kk~ 143 (635)
++++|+++
T Consensus 166 ~eaeL~~e 173 (276)
T PF12037_consen 166 EEAELRRE 173 (276)
T ss_pred HHHHHHHH
Confidence 34444333
No 120
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=31.53 E-value=1e+03 Score=29.52 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccCCcc
Q 006690 128 KEQRHREKEEAEMKKKLA----LQKQASMMERFLKRSKILTS 165 (635)
Q Consensus 128 ke~kr~~kee~~~kk~~~----~~kqa~~m~~Ffkk~k~~~~ 165 (635)
-|+.++|.|+.+-++|.. .-.|-.+...|..++.+.+.
T Consensus 435 mer~KrEeEerEskRQarklnfLltQTELySHFi~rK~d~n~ 476 (1185)
T KOG0388|consen 435 MERAKREEEERESKRQARKLNFLLTQTELYSHFIGRKNDCNL 476 (1185)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccCCc
Confidence 344444444444444433 34667788899988877764
No 121
>PF02029 Caldesmon: Caldesmon; InterPro: IPR006018 This group of proteins includes two protein families: caldesmon and lymphocyte specific protein. Caldesmon (CDM) is an actin- and myosin-binding protein implicated in the regulation of actomyosin interactions in smooth muscle and non-muscle cells, possibly acting as a bridge between myosin and actin filaments []. CDM is believed to be an elongated molecule, with an N-terminal myosin/calmodulin- binding domain and a C-terminal tropomyosin/actin/calmodulin-binding domain, separated by a 40nm-long central helix []. A high-molecular-weight form of CDM is predominantly expressed in smooth muscles, while a low-molecular-weight form is widely distributed in non- muscle tissues and cells (the protein is not expressed in skeletal muscle or heart).
Probab=31.01 E-value=2.7e+02 Score=32.31 Aligned_cols=7 Identities=14% Similarity=0.643 Sum_probs=2.7
Q ss_pred hHHHHHH
Q 006690 33 SIRVLVD 39 (635)
Q Consensus 33 ~ir~~~~ 39 (635)
++-++++
T Consensus 192 E~ks~~d 198 (492)
T PF02029_consen 192 EVKSFLD 198 (492)
T ss_pred cchhhhh
Confidence 3334333
No 122
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=30.20 E-value=5.7e+02 Score=25.58 Aligned_cols=8 Identities=25% Similarity=0.468 Sum_probs=3.0
Q ss_pred HHhhhhcc
Q 006690 39 DSMLKKNG 46 (635)
Q Consensus 39 ~~~~~k~~ 46 (635)
+.+.++..
T Consensus 49 ee~~~~~~ 56 (170)
T PF14943_consen 49 EEVLRKKY 56 (170)
T ss_pred HHHHHHHH
Confidence 33333333
No 123
>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=28.88 E-value=3.7e+02 Score=32.42 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=22.6
Q ss_pred HHHHHhhhhchhhHHHHHHHhhhhcchhHHHHHHHHHHHH
Q 006690 21 ASKKLGKVLSEASIRVLVDSMLKKNGAEIVEKDAKREEKI 60 (635)
Q Consensus 21 ~~~~~~~~~~~~~ir~~~~~~~~k~~~~~~~k~~~~~ek~ 60 (635)
...-+++....-.+-.-|.++|+.++-....+.....|.+
T Consensus 153 ~~~~~~~~~p~t~lE~~i~~~L~~~~~~~~~~~~~~~e~~ 192 (735)
T PF04615_consen 153 VASLASKFKPRTELEKEIASILEESGLASDEKKLTEAEEL 192 (735)
T ss_pred hhhhhhccCCCCHHHHHHHHHHHHcCCCcchhhhhHHHHH
Confidence 3344555555666667777778777766333333333333
No 124
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.60 E-value=5.4e+02 Score=28.43 Aligned_cols=77 Identities=31% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHhhhhcchhHHHHHHHHHHHH-----HHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006690 36 VLVDSMLKKNGAEIVEKDAKREEKI-----LIKQLEKNKREVEKE----KKRMDCEQQKEKLHSERELKRLQEEAERDER 106 (635)
Q Consensus 36 ~~~~~~~~k~~~~~~~k~~~~~ek~-----~~k~~ek~~k~~ekE----~~~~~~e~~ke~~~~eke~k~~ee~~~ke~k 106 (635)
|+.+..-+|-++--+.-..+.+|.+ ..|+.|-+.|++||| -.++.|.-+.|+.+.+...+..+|+...=++
T Consensus 319 s~qet~eaKr~e~~~e~qrkEee~rqmFvqrvkekE~elke~Ekel~~kf~~lkr~h~eEk~kle~~rr~Leee~~~f~~ 398 (406)
T KOG3859|consen 319 SLQETYEAKRNEFLGELQRKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKRLHQEEKKKLEEKRKQLEEEVNAFQR 398 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 006690 107 RREKEE 112 (635)
Q Consensus 107 r~ekee 112 (635)
|+...+
T Consensus 399 rk~~~~ 404 (406)
T KOG3859|consen 399 RKTAAE 404 (406)
T ss_pred HHHHHh
No 125
>PRK12705 hypothetical protein; Provisional
Probab=27.86 E-value=1e+03 Score=27.82 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 006690 141 KKKLALQKQASMMERFLKR 159 (635)
Q Consensus 141 kk~~~~~kqa~~m~~Ffkk 159 (635)
.+..+..+...++..=+.+
T Consensus 170 ~~~~a~~~A~~ii~~aiqr 188 (508)
T PRK12705 170 ADLEAERKAQNILAQAMQR 188 (508)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333333
No 126
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=27.84 E-value=6e+02 Score=25.03 Aligned_cols=78 Identities=12% Similarity=0.113 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 006690 45 NGAEIVEKDAKREEKILIKQLEKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRR-EKEEADIRKQIRKQ 122 (635)
Q Consensus 45 ~~~~~~~k~~~~~ek~~~k~~ek~~k~~ekE~~~~~~e~~ke~~~~eke~k~~ee~~~ke~kr~-ekee~e~~k~~~k~ 122 (635)
+.++....+++.......+++...+.+.+.-....+++.+++.++...+++.+-++-....+.. +.+.....++.+.+
T Consensus 68 ~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~l~~~ 146 (184)
T PRK13455 68 EEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVKAVRDR 146 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 127
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=27.42 E-value=99 Score=23.34 Aligned_cols=26 Identities=15% Similarity=0.415 Sum_probs=22.1
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHh
Q 006690 532 NKILEALQQKFPSISRAQLRNKVREI 557 (635)
Q Consensus 532 ~~LVEilqk~fP~vSK~~IKNTIkEI 557 (635)
...|+.|+.-||+++...|+..+...
T Consensus 3 ~~~v~~L~~mFP~l~~~~I~~~L~~~ 28 (43)
T smart00546 3 DEALHDLKDMFPNLDEEVIKAVLEAN 28 (43)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHc
Confidence 34688899999999999999888753
No 128
>PF02270 TFIIF_beta: Transcription initiation factor IIF, beta subunit; InterPro: IPR003196 Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIF (TFIIF) is a tetramer of two beta subunits associate with two alpha subunits which interacts directly with RNA polymerase II. The beta subunit of TFIIF is required for recruitment of RNA polymerase II onto the promoter. ; GO: 0005524 ATP binding, 0006367 transcription initiation from RNA polymerase II promoter, 0005674 transcription factor TFIIF complex; PDB: 1F3U_C 2BBY_A 1BBY_A.
Probab=27.28 E-value=84 Score=33.25 Aligned_cols=58 Identities=21% Similarity=0.377 Sum_probs=30.3
Q ss_pred CCCCCChHHHH-HHHhcCC-CcHHHHHHHHHHhCCCCcHHHHHHHHHHhhhccC---CCCceEecHhH
Q 006690 511 LISESDLPAIV-SVIQSCS-TNMNKILEALQQKFPSISRAQLRNKVREISDFNF---AENRWQVKREI 573 (635)
Q Consensus 511 ~ipd~dLp~Lv-~~I~gs~-~Sk~~LVEilqk~fP~vSK~~IKNTIkEIAtr~~---~~krW~VK~Ev 573 (635)
.++..+|.+++ .+-.... -++..|++..++ +-+-||.+|.+||++.. -.+.|.+|+|.
T Consensus 211 R~~~~eL~d~lF~~Fe~~~ywslK~L~~~t~Q-----P~~yLKeiL~eIa~~~k~g~~~~~w~LKpey 273 (275)
T PF02270_consen 211 RMDKNELLDLLFKLFEKHQYWSLKDLRQRTQQ-----PEAYLKEILEEIAVLNKRGPHKNMWELKPEY 273 (275)
T ss_dssp HHHHHHHHHHHHHHHHH-S-B-HHHHHHH--S------HHHHHHHHHHH--EE--TT---EE----SS
T ss_pred eCCHHHHHHHHHHHHHhCCCCCHHHHHHHHCC-----CHHHHHHHHHHHHHHhccCCcCCcEecchHH
Confidence 35665555444 4444444 389998888853 56889999999999964 44799999974
No 129
>PF09831 DUF2058: Uncharacterized protein conserved in bacteria (DUF2058); InterPro: IPR018636 This family, found in various prokaryotic proteins, has no known function.
Probab=26.70 E-value=4e+02 Score=26.94 Aligned_cols=6 Identities=33% Similarity=0.999 Sum_probs=3.8
Q ss_pred ccccCC
Q 006690 377 FFVPDG 382 (635)
Q Consensus 377 f~v~dg 382 (635)
|.|||+
T Consensus 169 y~IPDD 174 (177)
T PF09831_consen 169 YQIPDD 174 (177)
T ss_pred CCCCCC
Confidence 666665
No 130
>KOG4538 consensus Predicted coiled-coil protein [General function prediction only]
Probab=24.31 E-value=3.4e+02 Score=25.77 Aligned_cols=19 Identities=37% Similarity=0.471 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 006690 52 KDAKREEKILIKQLEKNKR 70 (635)
Q Consensus 52 k~~~~~ek~~~k~~ek~~k 70 (635)
|-+.+.|+.|.|...++.+
T Consensus 50 Km~lr~e~~~vK~~~~~i~ 68 (130)
T KOG4538|consen 50 KMELRAEKDMVKRVQDNIR 68 (130)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3345556666666665554
No 131
>PF10380 CRF1: Transcription factor CRF1; InterPro: IPR018837 CRF1 is a transcription factor that co-represses ribosomal genes with FHL1 via the TOR signalling pathway and protein kinase A [].
Probab=24.25 E-value=45 Score=31.81 Aligned_cols=20 Identities=25% Similarity=0.556 Sum_probs=14.8
Q ss_pred CCCCCceeeecCCCcccCCCCCCCC
Q 006690 305 SHRPAFYGIWPKKSHIVGPRHPLMK 329 (635)
Q Consensus 305 n~RPpy~GT~~k~s~~v~~r~Pf~k 329 (635)
++|||..|||... ...||+-
T Consensus 34 ~~rPP~LGtWv~~-----d~KPFgI 53 (123)
T PF10380_consen 34 DYRPPVLGTWVTT-----DSKPFGI 53 (123)
T ss_pred CCCCCeeeeeecc-----CCcccee
Confidence 5899999999532 2467774
No 132
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=24.22 E-value=1.1e+02 Score=23.12 Aligned_cols=25 Identities=20% Similarity=0.498 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHh
Q 006690 533 KILEALQQKFPSISRAQLRNKVREI 557 (635)
Q Consensus 533 ~LVEilqk~fP~vSK~~IKNTIkEI 557 (635)
..|+.|+.-||+++...|+..+...
T Consensus 3 ~~v~~L~~mFP~~~~~~I~~~L~~~ 27 (42)
T PF02845_consen 3 EMVQQLQEMFPDLDREVIEAVLQAN 27 (42)
T ss_dssp HHHHHHHHHSSSS-HHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHc
Confidence 4678899999999999999888654
No 133
>PRK10780 periplasmic chaperone; Provisional
Probab=23.81 E-value=6.8e+02 Score=24.29 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006690 59 KILIKQLEKNKREVEKEKKRMDCEQQKEKLHSERE 93 (635)
Q Consensus 59 k~~~k~~ek~~k~~ekE~~~~~~e~~ke~~~~eke 93 (635)
+.+..+|+++.+..+.+.++++.|.++......++
T Consensus 42 k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~ 76 (165)
T PRK10780 42 TGVSKQLENEFKGRASELQRMETDLQAKMQKLQRD 76 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33456666666766777777666666555555433
No 134
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=23.64 E-value=4.4e+02 Score=31.68 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=16.4
Q ss_pred HhCCCCcHHHHHHHHHHhhhcc---CCCCceE
Q 006690 540 QKFPSISRAQLRNKVREISDFN---FAENRWQ 568 (635)
Q Consensus 540 k~fP~vSK~~IKNTIkEIAtr~---~~~krW~ 568 (635)
+-..+.+.++|-+-|..|-+=. .+.+.|.
T Consensus 623 ~i~~h~~~q~iL~dl~~ilDEdAE~FV~KmWR 654 (668)
T KOG2253|consen 623 NIRQHSSPQQILDDLAMILDEDAEVFVVKMWR 654 (668)
T ss_pred HHHhcCCHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3345677777766666654432 1556664
No 135
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=23.42 E-value=5.9e+02 Score=23.93 Aligned_cols=47 Identities=28% Similarity=0.285 Sum_probs=21.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006690 71 EVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRREKEEADIRKQ 118 (635)
Q Consensus 71 ~~ekE~~~~~~e~~ke~~~~eke~k~~ee~~~ke~kr~ekee~e~~k~ 118 (635)
++||+-...=-++++-+.++.|++|.+ -+.+-++=|.++|++...++
T Consensus 13 qAEK~A~e~V~~ARk~K~~RLKQAKeE-A~~Eie~yr~qrE~efk~ke 59 (108)
T KOG1772|consen 13 QAEKRAAEKVEEARKRKLRRLKQAKEE-AEKEIEEYRSQREKEFKEKE 59 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 344443333334455555555555432 22333455555555555443
No 136
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=23.34 E-value=1.4e+02 Score=27.69 Aligned_cols=11 Identities=18% Similarity=0.099 Sum_probs=6.3
Q ss_pred CCCC---Cceeeec
Q 006690 305 SHRP---AFYGIWP 315 (635)
Q Consensus 305 n~RP---py~GT~~ 315 (635)
|.+| ||.||--
T Consensus 23 nk~PivCP~CG~~~ 36 (108)
T PF09538_consen 23 NKDPIVCPKCGTEF 36 (108)
T ss_pred CCCCccCCCCCCcc
Confidence 4455 5777543
No 137
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=23.32 E-value=7.1e+02 Score=24.39 Aligned_cols=15 Identities=13% Similarity=0.279 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhhccc
Q 006690 146 LQKQASMMERFLKRS 160 (635)
Q Consensus 146 ~~kqa~~m~~Ffkk~ 160 (635)
...+..+++.-|...
T Consensus 75 L~~r~~~l~~v~~~a 89 (188)
T PRK02292 75 LNARKEVLEDVRNQV 89 (188)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334455556555544
No 138
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=23.29 E-value=1.1e+03 Score=26.72 Aligned_cols=14 Identities=21% Similarity=0.470 Sum_probs=6.9
Q ss_pred cHHHHHHHHHHhCC
Q 006690 530 NMNKILEALQQKFP 543 (635)
Q Consensus 530 Sk~~LVEilqk~fP 543 (635)
|+.+=++.++..+|
T Consensus 431 Sv~~rL~~l~~~l~ 444 (445)
T PRK13428 431 TLSSRLAAAEAQLP 444 (445)
T ss_pred hHHHHHHHHHhhCC
Confidence 44444455555555
No 139
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=23.20 E-value=34 Score=42.24 Aligned_cols=35 Identities=37% Similarity=0.425 Sum_probs=19.8
Q ss_pred CCChhhh----hHHHHHHHHHhhhhchhhHHHHHHHhhh
Q 006690 9 ESDPSFI----NDLMKASKKLGKVLSEASIRVLVDSMLK 43 (635)
Q Consensus 9 ~~~~~~~----~~~~~~~~~~~~~~~~~~ir~~~~~~~~ 43 (635)
+++.+|| ||||.--.|-+..|.++.-|-.|.-++|
T Consensus 16 ssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLk 54 (1233)
T KOG1824|consen 16 SSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLK 54 (1233)
T ss_pred CCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHH
Confidence 3445554 5666666666666666665555554443
No 140
>COG4499 Predicted membrane protein [Function unknown]
Probab=23.07 E-value=1.8e+02 Score=32.84 Aligned_cols=18 Identities=17% Similarity=0.420 Sum_probs=11.4
Q ss_pred HHHHHHhhhhchhhHHHH
Q 006690 20 KASKKLGKVLSEASIRVL 37 (635)
Q Consensus 20 ~~~~~~~~~~~~~~ir~~ 37 (635)
+-+..++.-|.--+|-.+
T Consensus 330 ~eAinIAr~L~D~d~~~~ 347 (434)
T COG4499 330 KEAINIARNLDDNDLTLL 347 (434)
T ss_pred HHHhhHHHhCCcchhHHH
Confidence 445677777776666543
No 141
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=22.90 E-value=1.9e+02 Score=25.77 Aligned_cols=43 Identities=28% Similarity=0.338 Sum_probs=36.1
Q ss_pred HHHHHHhc--CCCcHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcc
Q 006690 519 AIVSVIQS--CSTNMNKILEALQQKFPSISRAQLRNKVREISDFN 561 (635)
Q Consensus 519 ~Lv~~I~g--s~~Sk~~LVEilqk~fP~vSK~~IKNTIkEIAtr~ 561 (635)
.+++++.. .++|...|.+.+++..|.+++++|=++|+.++.-+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 34555554 45899999999999999999999999999998874
No 142
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=22.46 E-value=1.8e+02 Score=33.84 Aligned_cols=39 Identities=26% Similarity=0.509 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006690 92 RELKRLQEEAERDERRREKEEADIRKQIRKQQEEADKEQ 130 (635)
Q Consensus 92 ke~k~~ee~~~ke~kr~ekee~e~~k~~~k~~~e~~ke~ 130 (635)
+|+.++|.+.+++.+.++|++++.+++++|.++.+.-+.
T Consensus 503 rEq~~eq~ekkkek~anqka~kk~kkelrkaeekqk~ae 541 (591)
T KOG2505|consen 503 REQEREQAEKKKEKKANQKAKKKLKKELRKAEEKQKYAE 541 (591)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
No 143
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=21.99 E-value=1.2e+03 Score=27.12 Aligned_cols=12 Identities=17% Similarity=0.642 Sum_probs=7.1
Q ss_pred hcchhhhhhhhh
Q 006690 215 HLSSWHRFGHFV 226 (635)
Q Consensus 215 ~~~~w~~l~~~~ 226 (635)
.+..|+.+-.+|
T Consensus 416 rl~RWqQIE~lc 427 (575)
T KOG4403|consen 416 RLHRWQQIESLC 427 (575)
T ss_pred HHHHHHHHHHHh
Confidence 456787765333
No 144
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.16 E-value=68 Score=33.37 Aligned_cols=39 Identities=38% Similarity=0.550 Sum_probs=0.0
Q ss_pred CCccc-------cccccCCCCCCCCCCCCCccc-CCCCCCCcccCCC
Q 006690 338 DSDEE-------WEEEEPGESLSDCEKDGDEEG-CSKADDEDESEDG 376 (635)
Q Consensus 338 DSd~E-------Weeee~GEdl~~~e~d~e~ee-d~~~~ded~~~d~ 376 (635)
+.|+. |.|+++.++-...++++++.+ |++.+++++++++
T Consensus 23 e~de~~~~~~~~f~Eee~D~ef~~~~~eed~~~~Dsdf~~se~de~~ 69 (240)
T PF05764_consen 23 EEDEFFWNQYGLFQEEEDDEEFESEEEEEDEEEDDSDFDDSEDDEDE 69 (240)
T ss_pred hhhhhhhhhcccccccCCCccccCCCccccccccccccCccccCCCC
No 145
>PF00250 Fork_head: Fork head domain; InterPro: IPR001766 The fork head protein of Drosophila melanogaster, a transcription factor that promotes terminal rather than segmental development, contains neither homeodomains nor zinc-fingers characteristic of other transcription factors []. Instead, it contains a distinct type of DNA-binding region, containing around 100 amino acids, which has since been identified in a number of transcription factors (including D. melanogaster FD1-5, mammalian HNF-3, human HTLF, Saccharomyces cerevisiae HCM1, etc.). This is referred to as the fork head domain but is also known as a 'winged helix' [, , ]. The fork head domain binds B-DNA as a monomer [], but shows no similarity to previously identified DNA-binding motifs. Although the domain is found in several different transcription factors, a common function is their involvement in early developmental decisions of cell fates during embryogenesis [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2UZK_A 2K86_A 1JXS_A 2C6Y_A 2A3S_A 2D2W_A 2KIU_A 1VTN_C 2A07_J 2AS5_F ....
Probab=20.75 E-value=1.2e+02 Score=27.22 Aligned_cols=56 Identities=20% Similarity=0.361 Sum_probs=37.6
Q ss_pred HHHhcCC---CcHHHHHHHHHHhCCCCc------HHHHHHHHHHhhhccC---------CCCceEecHhHHHHc
Q 006690 522 SVIQSCS---TNMNKILEALQQKFPSIS------RAQLRNKVREISDFNF---------AENRWQVKREILIEL 577 (635)
Q Consensus 522 ~~I~gs~---~Sk~~LVEilqk~fP~vS------K~~IKNTIkEIAtr~~---------~~krW~VK~EvL~~~ 577 (635)
..|.+++ +++..|.+-+..+||.|- |..|++.+.--..|.+ +..-|.|.++....+
T Consensus 12 ~Ai~~sp~~~Ltl~eIy~~i~~~~pyyr~~~~~WknSIRHnLS~~~~F~kv~~~~~~~gkg~~W~i~~~~~~~~ 85 (96)
T PF00250_consen 12 MAILSSPDKRLTLSEIYEWIEENFPYYRDASKGWKNSIRHNLSLNKCFVKVPRDPSEPGKGSYWTIDPEAIEEF 85 (96)
T ss_dssp HHHHTSTTSEBEHHHHHHHHHHHCGHHHCTHCHHHHHHHHHHHHSTTEEEESCCTSSSSSSEEEEE-CTHHHHH
T ss_pred HHHHhCCCCCccHHHHHHHHHHhhccccccchhhhhHHhhhccccceeeecCcCCCCCCCceeEEeCHHHHHHH
Confidence 5666665 478889999999999753 5566666655555521 345799999877654
No 146
>PF06959 RecQ5: RecQ helicase protein-like 5 (RecQ5); InterPro: IPR010716 This family represents a conserved region approximately 200 residues long within eukaryotic RecQ helicase protein-like 5 (RecQ5). The RecQ helicases have been implicated in DNA repair and recombination, and RecQ5 may have an important role in DNA metabolism [].
Probab=20.68 E-value=97 Score=31.83 Aligned_cols=43 Identities=26% Similarity=0.458 Sum_probs=22.2
Q ss_pred ccchhhhhccccC--CCCCCCCCCCCCCCCCCCCCCCcccCCCCCc
Q 006690 588 AKGIATFFSKRCL--PPDGKSLNPNEASPLSSLKPGSAVHGQHGCT 631 (635)
Q Consensus 588 ~~~~~~~~s~~c~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (635)
-.+|+.||+.|+- |+..........+|-+. --......+..||
T Consensus 137 SQnItRFF~qr~esp~~~~sa~~~e~asPS~~-~v~~~~~~pek~~ 181 (205)
T PF06959_consen 137 SQNITRFFCQRAESPPPSASAPRAEGASPSCE-GVQGPPMAPEKCT 181 (205)
T ss_pred hhhHHHHHHhhccCCCCcccCccccccCCCcc-cccCCccCccccc
Confidence 4689999998876 33333333344444322 1112233455566
No 147
>KOG3756 consensus Pinin (desmosome-associated protein) [Cytoskeleton]
Probab=20.67 E-value=9.1e+02 Score=26.77 Aligned_cols=28 Identities=36% Similarity=0.423 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006690 118 QIRKQQEEADKEQRHREKEEAEMKKKLA 145 (635)
Q Consensus 118 ~~~k~~~e~~ke~kr~~kee~~~kk~~~ 145 (635)
++++++.+---+.+++..|--.+....+
T Consensus 186 ~l~~qe~~l~~~rr~r~~ElR~l~~kka 213 (340)
T KOG3756|consen 186 QLEKQERELLEERRARQTELRLLEQKKA 213 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555444443333
No 148
>PF11081 DUF2890: Protein of unknown function (DUF2890); InterPro: IPR021304 This entry contains the 33kDa and 22kDa phosphoproteins from vertebrate adenoviruses.
Probab=20.35 E-value=39 Score=34.34 Aligned_cols=14 Identities=43% Similarity=0.961 Sum_probs=9.7
Q ss_pred CCccccccccCCCCCC
Q 006690 338 DSDEEWEEEEPGESLS 353 (635)
Q Consensus 338 DSd~EWeeee~GEdl~ 353 (635)
|.+++|+. +||.|.
T Consensus 19 ~~eE~w~S--qaE~l~ 32 (187)
T PF11081_consen 19 DEEEEWDS--QAEELG 32 (187)
T ss_pred chhhhhhh--cccccC
Confidence 88888873 566665
No 149
>KOG4709 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.34 E-value=3.4e+02 Score=28.08 Aligned_cols=7 Identities=29% Similarity=0.539 Sum_probs=3.2
Q ss_pred HHHHHHh
Q 006690 150 ASMMERF 156 (635)
Q Consensus 150 a~~m~~F 156 (635)
+-+|..|
T Consensus 82 eErl~af 88 (217)
T KOG4709|consen 82 EERLEAF 88 (217)
T ss_pred HHHHHHh
Confidence 3445553
No 150
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.30 E-value=2.4e+02 Score=29.43 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=12.6
Q ss_pred hhHHHHH---HHHHHHHHHHHHHHHHH
Q 006690 47 AEIVEKD---AKREEKILIKQLEKNKR 70 (635)
Q Consensus 47 ~~~~~k~---~~~~ek~~~k~~ek~~k 70 (635)
.++++++ +....+.|...++++++
T Consensus 90 ~~rAqkAFdivkKA~k~l~n~~~rkr~ 116 (250)
T KOG1150|consen 90 AERAQKAFDIVKKAYKLLENDKIRKRC 116 (250)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 3444443 44466666666655444
Done!