Query 006690
Match_columns 635
No_of_seqs 182 out of 248
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 06:21:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006690.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006690hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oja_A Leucine-rich immune mol 76.8 21 0.00074 38.1 12.8 11 129-139 450-460 (487)
2 2i1j_A Moesin; FERM, coiled-co 75.3 1.3 4.6E-05 49.6 2.9 65 38-103 302-381 (575)
3 2i1j_A Moesin; FERM, coiled-co 70.0 6.8 0.00023 43.9 7.0 18 84-101 334-351 (575)
4 1bby_A RAP30; average structur 69.5 3.3 0.00011 34.3 3.2 50 519-573 12-65 (69)
5 3oja_A Leucine-rich immune mol 62.2 1.2E+02 0.0041 32.2 14.6 28 101-128 433-460 (487)
6 2ca6_A RAN GTPase-activating p 60.9 2.1 7.1E-05 43.7 0.6 10 296-305 275-284 (386)
7 1ij5_A Plasmodial specific LAV 57.4 37 0.0013 34.5 9.2 31 512-542 287-320 (323)
8 2p5k_A Arginine repressor; DNA 57.2 23 0.00077 26.9 5.9 40 519-558 9-49 (64)
9 1f5n_A Interferon-induced guan 53.2 1.5E+02 0.0052 33.3 14.0 17 124-140 544-560 (592)
10 1q1v_A DEK protein; winged-hel 50.1 33 0.0011 28.2 6.0 52 506-557 6-65 (70)
11 2fu4_A Ferric uptake regulatio 50.0 29 0.00098 27.9 5.7 44 518-561 20-66 (83)
12 2ca6_A RAN GTPase-activating p 45.5 4.2 0.00014 41.5 -0.2 6 298-303 247-252 (386)
13 1otr_A Protein CUE2; protein-p 36.1 30 0.001 26.7 3.4 22 535-556 8-29 (49)
14 1f5n_A Interferon-induced guan 33.0 5.6E+02 0.019 28.7 15.2 13 34-46 468-480 (592)
15 3vkg_A Dynein heavy chain, cyt 26.8 7.8E+02 0.027 33.5 16.0 118 31-149 1916-2039(3245)
16 3p87_G Ribonuclease H2 subunit 26.5 20 0.00069 23.8 0.8 11 587-597 4-14 (23)
17 2o03_A Probable zinc uptake re 25.1 93 0.0032 27.4 5.2 43 519-561 15-59 (131)
18 1mzb_A Ferric uptake regulatio 23.0 1.3E+02 0.0043 26.7 5.7 43 519-561 22-67 (136)
19 2xig_A Ferric uptake regulatio 21.6 1.4E+02 0.0048 27.0 5.8 43 519-561 31-75 (150)
20 2fe3_A Peroxide operon regulat 20.5 1.3E+02 0.0045 27.0 5.3 42 520-561 27-70 (145)
21 2w57_A Ferric uptake regulatio 20.2 1.3E+02 0.0044 27.3 5.2 43 519-561 21-66 (150)
No 1
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=76.83 E-value=21 Score=38.07 Aligned_cols=11 Identities=27% Similarity=0.265 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 006690 129 EQRHREKEEAE 139 (635)
Q Consensus 129 e~kr~~kee~~ 139 (635)
+..|.+|+-.+
T Consensus 450 ~~~~~~~~~~~ 460 (487)
T 3oja_A 450 ENARLKKLNGE 460 (487)
T ss_dssp HHHHHHHHHHH
T ss_pred Hhhhhhhhhhh
Confidence 33344443333
No 2
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=75.28 E-value=1.3 Score=49.55 Aligned_cols=65 Identities=25% Similarity=0.337 Sum_probs=26.8
Q ss_pred HHHhhhhcchhHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHH
Q 006690 38 VDSMLKKNGAEIVEKDAKR------------EEKILIKQLEKNKREVEKEKKRMDCEQQKEKLHS---ERELKRLQEEAE 102 (635)
Q Consensus 38 ~~~~~~k~~~~~~~k~~~~------------~ek~~~k~~ek~~k~~ekE~~~~~~e~~ke~~~~---eke~k~~ee~~~ 102 (635)
|..|+..--+++..|.+++ .|+ -+.+++...++.+.|.++.+.++.+.++.. +.++++.|++++
T Consensus 302 ~qqm~~~a~e~~~~~~~e~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~ 380 (575)
T 2i1j_A 302 VQQMKAQAREEKLAKQAQREKLQLEIAARERAEK-KQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKE 380 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4555555556666666665 111 134444455566666666666554433322 344444444444
Q ss_pred H
Q 006690 103 R 103 (635)
Q Consensus 103 k 103 (635)
.
T Consensus 381 ~ 381 (575)
T 2i1j_A 381 E 381 (575)
T ss_dssp -
T ss_pred H
Confidence 3
No 3
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=70.02 E-value=6.8 Score=43.89 Aligned_cols=18 Identities=28% Similarity=0.492 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006690 84 QKEKLHSERELKRLQEEA 101 (635)
Q Consensus 84 ~ke~~~~eke~k~~ee~~ 101 (635)
++++..++..++..+++.
T Consensus 334 ~~~~~~~~~~~~~~~~~~ 351 (575)
T 2i1j_A 334 EKKQQEYQDRLRQMQEEM 351 (575)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 444444444444444444
No 4
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=69.48 E-value=3.3 Score=34.34 Aligned_cols=50 Identities=22% Similarity=0.413 Sum_probs=37.6
Q ss_pred HHHHHHhcCCC-cHHHHHHHHHHhCCCCcHHHHHHHHHHhhhccC---CCCceEecHhH
Q 006690 519 AIVSVIQSCST-NMNKILEALQQKFPSISRAQLRNKVREISDFNF---AENRWQVKREI 573 (635)
Q Consensus 519 ~Lv~~I~gs~~-Sk~~LVEilqk~fP~vSK~~IKNTIkEIAtr~~---~~krW~VK~Ev 573 (635)
.|+..-..... ++..|+...++ +-+-||..+++||++.. -.+.|.+|+|.
T Consensus 12 ~lF~~Fek~~yw~lK~L~~~t~Q-----P~~yLKeiL~~Ia~~~k~g~~~~~weLKpEy 65 (69)
T 1bby_A 12 MLFSAFEKHQYYNLKDLVDITKQ-----PVVYLKEILKEIGVQNVKGIHKNTWELKPEY 65 (69)
T ss_dssp HHHHHHHHCSCBCHHHHHHHCCS-----CHHHHHHHHHHHCCCBCCTTCCCBBCCCCSS
T ss_pred HHHHHHhhcCCCcHHHHHHHHcC-----cHHHHHHHHHHHHHHHcCCCCCCeeeCcHHH
Confidence 34444444443 89888877765 78999999999999964 46899999974
No 5
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.19 E-value=1.2e+02 Score=32.24 Aligned_cols=28 Identities=14% Similarity=0.161 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006690 101 AERDERRREKEEADIRKQIRKQQEEADK 128 (635)
Q Consensus 101 ~~ke~kr~ekee~e~~k~~~k~~~e~~k 128 (635)
+.++.+.-..++..++++..+.+++.++
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGE 460 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhh
Confidence 3333333333333333333333333333
No 6
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=60.91 E-value=2.1 Score=43.72 Aligned_cols=10 Identities=20% Similarity=0.086 Sum_probs=5.3
Q ss_pred cceEEEecCC
Q 006690 296 WKQLLQFDKS 305 (635)
Q Consensus 296 ~~K~l~F~en 305 (635)
..+.|.+..|
T Consensus 275 ~L~~L~L~~n 284 (386)
T 2ca6_A 275 GLQTLRLQYN 284 (386)
T ss_dssp CCCEEECCSS
T ss_pred CeEEEECcCC
Confidence 3555555554
No 7
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=57.37 E-value=37 Score=34.51 Aligned_cols=31 Identities=10% Similarity=0.112 Sum_probs=18.4
Q ss_pred CCCCChHHHHHHHhcCC---CcHHHHHHHHHHhC
Q 006690 512 ISESDLPAIVSVIQSCS---TNMNKILEALQQKF 542 (635)
Q Consensus 512 ipd~dLp~Lv~~I~gs~---~Sk~~LVEilqk~f 542 (635)
+++..+..++..+..+. .+...++..+..-|
T Consensus 287 ls~~e~~~l~~~~D~d~dG~Is~~EF~~~~~~~~ 320 (323)
T 1ij5_A 287 SARKKFEHQFSVVDVDDSKSLSYQEFVMLVLLMF 320 (323)
T ss_dssp GGCSTHHHHHHHHTTTTCSEECHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHCCCCCCcEeHHHHHHHHHHhc
Confidence 56666777777776433 35566666555443
No 8
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=57.23 E-value=23 Score=26.88 Aligned_cols=40 Identities=18% Similarity=0.327 Sum_probs=32.8
Q ss_pred HHHHHHhc-CCCcHHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 006690 519 AIVSVIQS-CSTNMNKILEALQQKFPSISRAQLRNKVREIS 558 (635)
Q Consensus 519 ~Lv~~I~g-s~~Sk~~LVEilqk~fP~vSK~~IKNTIkEIA 558 (635)
.|..++.. ...|...|.+.|.+..|++|.++|.+.|+++.
T Consensus 9 ~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~lg 49 (64)
T 2p5k_A 9 KIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKELH 49 (64)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcC
Confidence 34455554 46799999999999999999999999998653
No 9
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=53.23 E-value=1.5e+02 Score=33.25 Aligned_cols=17 Identities=12% Similarity=0.335 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006690 124 EEADKEQRHREKEEAEM 140 (635)
Q Consensus 124 ~e~~ke~kr~~kee~~~ 140 (635)
+|.++--..+-+|++++
T Consensus 544 ~e~~~~~~~~~~~~~~~ 560 (592)
T 1f5n_A 544 KEQERTLALKLQEQEQL 560 (592)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444455554444
No 10
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=50.15 E-value=33 Score=28.20 Aligned_cols=52 Identities=15% Similarity=0.358 Sum_probs=37.2
Q ss_pred CCCCCCCCCCChHHHHHHHh-cCCC---cHHHHHHHHHHhCCCCc----HHHHHHHHHHh
Q 006690 506 KGSTTLISESDLPAIVSVIQ-SCST---NMNKILEALQQKFPSIS----RAQLRNKVREI 557 (635)
Q Consensus 506 Kk~kt~ipd~dLp~Lv~~I~-gs~~---Sk~~LVEilqk~fP~vS----K~~IKNTIkEI 557 (635)
|+.+...+++.|...|..|. +.++ |+..|-..|..+||++. |+.|+..|.++
T Consensus 6 ~k~~~~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~~pg~dLs~kK~~I~~~I~~~ 65 (70)
T 1q1v_A 6 KKLKKPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTERKDFIKTTVKEL 65 (70)
T ss_dssp CCCCCCCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCSHHHHHHHHHHHHH
T ss_pred hcccCCcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHccCCCChHHHHHHHHHHHHH
Confidence 44444556677777666555 4443 78899999999999876 77777777664
No 11
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=50.05 E-value=29 Score=27.87 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=37.2
Q ss_pred HHHHHHHhc---CCCcHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcc
Q 006690 518 PAIVSVIQS---CSTNMNKILEALQQKFPSISRAQLRNKVREISDFN 561 (635)
Q Consensus 518 p~Lv~~I~g---s~~Sk~~LVEilqk~fP~vSK~~IKNTIkEIAtr~ 561 (635)
..++.+|.. .+.|...|.+.+.+.+|.+++++|-++|+.+...+
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 456666654 46899999999999999999999999999988774
No 12
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=45.54 E-value=4.2 Score=41.46 Aligned_cols=6 Identities=17% Similarity=0.329 Sum_probs=2.2
Q ss_pred eEEEec
Q 006690 298 QLLQFD 303 (635)
Q Consensus 298 K~l~F~ 303 (635)
+.|.+.
T Consensus 247 ~~L~L~ 252 (386)
T 2ca6_A 247 RELGLN 252 (386)
T ss_dssp CEEECT
T ss_pred CEEECC
Confidence 333333
No 13
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=36.06 E-value=30 Score=26.69 Aligned_cols=22 Identities=36% Similarity=0.609 Sum_probs=19.4
Q ss_pred HHHHHHhCCCCcHHHHHHHHHH
Q 006690 535 LEALQQKFPSISRAQLRNKVRE 556 (635)
Q Consensus 535 VEilqk~fP~vSK~~IKNTIkE 556 (635)
|..|+.-||.+++.+|++++..
T Consensus 8 v~~L~EMFP~~~~~~ik~~L~~ 29 (49)
T 1otr_A 8 LSILMDMFPAISKSKLQVHLLE 29 (49)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHH
Confidence 5778999999999999998864
No 14
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=32.97 E-value=5.6e+02 Score=28.66 Aligned_cols=13 Identities=15% Similarity=0.391 Sum_probs=6.1
Q ss_pred HHHHHHHhhhhcc
Q 006690 34 IRVLVDSMLKKNG 46 (635)
Q Consensus 34 ir~~~~~~~~k~~ 46 (635)
+-.+-+.++|-+.
T Consensus 468 ~~~~~~~ilq~d~ 480 (592)
T 1f5n_A 468 KESMTDAILQTDQ 480 (592)
T ss_dssp THHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHH
Confidence 3444455555443
No 15
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=26.81 E-value=7.8e+02 Score=33.47 Aligned_cols=118 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred hhhHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006690 31 EASIRVLVDSMLKKNGAEIVEKDAKREEKILIKQLEKNKREVEKEKKRMDCEQQKEKLHSERELKRLQEEAERDERRREK 110 (635)
Q Consensus 31 ~~~ir~~~~~~~~k~~~~~~~k~~~~~ek~~~k~~ek~~k~~ekE~~~~~~e~~ke~~~~eke~k~~ee~~~ke~kr~ek 110 (635)
...++.|.-||..=+.+...-.+-..+=..++.+|++..+++++-.+.+..+ +.+.++.+.+...+++++.+++...+.
T Consensus 1916 ~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~-~~~ae~~k~~v~~~~~~~~~~~~ei~~ 1994 (3245)
T 3vkg_A 1916 EEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD-QQAAEIKQKDARELQVQLDVRNKEIAV 1994 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006690 111 EEADIRKQIRKQQ------EEADKEQRHREKEEAEMKKKLALQKQ 149 (635)
Q Consensus 111 ee~e~~k~~~k~~------~e~~ke~kr~~kee~~~kk~~~~~kq 149 (635)
..++.++.+.+++ ++.++.++..++-+++++..++.-+.
T Consensus 1995 ~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~ 2039 (3245)
T 3vkg_A 1995 QKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITA 2039 (3245)
T ss_dssp HHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 16
>3p87_G Ribonuclease H2 subunit B; DNA binding, DNA replication, DNA repair, sliding clamp, PCN interacting peptide (PIP) motif, PIP-box motif, DNA clamp; 2.99A {Homo sapiens}
Probab=26.46 E-value=20 Score=23.77 Aligned_cols=11 Identities=45% Similarity=0.631 Sum_probs=9.8
Q ss_pred Cccchhhhhcc
Q 006690 587 RAKGIATFFSK 597 (635)
Q Consensus 587 ~~~~~~~~~s~ 597 (635)
+||+|+.||+.
T Consensus 4 gMKSI~sFF~~ 14 (23)
T 3p87_G 4 GMKSIDTFFGV 14 (26)
T ss_pred cchhHHHHhcc
Confidence 79999999984
No 17
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.07 E-value=93 Score=27.39 Aligned_cols=43 Identities=9% Similarity=0.215 Sum_probs=35.8
Q ss_pred HHHHHHhc--CCCcHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcc
Q 006690 519 AIVSVIQS--CSTNMNKILEALQQKFPSISRAQLRNKVREISDFN 561 (635)
Q Consensus 519 ~Lv~~I~g--s~~Sk~~LVEilqk~fP~vSK~~IKNTIkEIAtr~ 561 (635)
.+++++.+ .++|...|.+.+++.+|.+++++|=++|+.+...+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34555543 46799999999999999999999999999988874
No 18
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=23.04 E-value=1.3e+02 Score=26.73 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=35.9
Q ss_pred HHHHHHhc---CCCcHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcc
Q 006690 519 AIVSVIQS---CSTNMNKILEALQQKFPSISRAQLRNKVREISDFN 561 (635)
Q Consensus 519 ~Lv~~I~g---s~~Sk~~LVEilqk~fP~vSK~~IKNTIkEIAtr~ 561 (635)
.+++++.. .++|...|.+.+++.+|.++.++|=++|+-+..-+
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 44555543 46799999999999999999999999999888774
No 19
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.59 E-value=1.4e+02 Score=27.03 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=35.8
Q ss_pred HHHHHHhc--CCCcHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcc
Q 006690 519 AIVSVIQS--CSTNMNKILEALQQKFPSISRAQLRNKVREISDFN 561 (635)
Q Consensus 519 ~Lv~~I~g--s~~Sk~~LVEilqk~fP~vSK~~IKNTIkEIAtr~ 561 (635)
.+++++.. .++|...|.+.+++.+|.++.++|=++|+.+...+
T Consensus 31 ~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 31 EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34445543 46899999999999999999999999999988874
No 20
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.45 E-value=1.3e+02 Score=26.96 Aligned_cols=42 Identities=26% Similarity=0.430 Sum_probs=35.0
Q ss_pred HHHHHh--cCCCcHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcc
Q 006690 520 IVSVIQ--SCSTNMNKILEALQQKFPSISRAQLRNKVREISDFN 561 (635)
Q Consensus 520 Lv~~I~--gs~~Sk~~LVEilqk~fP~vSK~~IKNTIkEIAtr~ 561 (635)
+++++. +.++|...|.+.+++.+|.++.++|=++|+-+..-+
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 444444 346899999999999999999999999999888774
No 21
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.21 E-value=1.3e+02 Score=27.29 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=36.2
Q ss_pred HHHHHHhc---CCCcHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcc
Q 006690 519 AIVSVIQS---CSTNMNKILEALQQKFPSISRAQLRNKVREISDFN 561 (635)
Q Consensus 519 ~Lv~~I~g---s~~Sk~~LVEilqk~fP~vSK~~IKNTIkEIAtr~ 561 (635)
.++++|.. .++|...|.+.+++.+|.++.++|=++|+.+...+
T Consensus 21 ~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 21 KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 44555543 46799999999999999999999999999998874
Done!