Query 006690
Match_columns 635
No_of_seqs 182 out of 248
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 06:21:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006690.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006690hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bbya_ a.4.5.15 (A:) DNA-bind 65.1 3.2 0.00023 32.5 4.2 51 518-573 11-65 (69)
2 d2doaa1 a.4.5.81 (A:8-98) RNA 49.2 8.3 0.0006 31.0 4.4 60 520-579 10-70 (91)
3 d1dpua_ a.4.5.16 (A:) C-termin 31.0 18 0.0013 27.8 3.5 43 518-560 9-51 (69)
4 d1mzba_ a.4.5.42 (A:) Ferric u 26.9 45 0.0033 27.4 5.7 44 518-561 19-65 (134)
5 d1kxpd3 a.126.1.1 (D:405-473) 19.3 59 0.0043 24.9 4.3 30 531-560 15-44 (69)
6 d2c6ya1 a.4.5.14 (A:1-98) Inte 17.6 1.3E+02 0.0095 24.0 6.5 57 521-577 13-87 (98)
7 d1d5va_ a.4.5.14 (A:) Adipocyt 15.4 41 0.003 27.1 2.7 58 520-577 13-88 (94)
8 d1q1va_ a.159.4.1 (A:) DEK C-t 15.3 1.8E+02 0.013 21.9 6.4 56 502-557 2-65 (70)
9 d1kq8a_ a.4.5.14 (A:) HFH-1 (H 13.7 1.5E+02 0.011 22.6 5.5 52 520-571 5-75 (75)
10 d2a07f1 a.4.5.14 (F:503-584) F 13.6 1.4E+02 0.0099 23.2 5.4 58 519-576 10-80 (82)
No 1
>d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.11 E-value=3.2 Score=32.53 Aligned_cols=51 Identities=20% Similarity=0.361 Sum_probs=37.7
Q ss_pred HHHHHHHhcCC-CcHHHHHHHHHHhCCCCcHHHHHHHHHHhhhccC---CCCceEecHhH
Q 006690 518 PAIVSVIQSCS-TNMNKILEALQQKFPSISRAQLRNKVREISDFNF---AENRWQVKREI 573 (635)
Q Consensus 518 p~Lv~~I~gs~-~Sk~~LVEilqk~fP~vSK~~IKNTIkEIAtr~~---~~krW~VK~Ev 573 (635)
..|+..-.... -|+..|++.. .=+.+-||.++++||++.. -.+.|.+|+|.
T Consensus 11 d~lF~~Fek~~ywsiK~L~~~t-----~QP~~yLKeiL~eIa~~~~~g~~~~~weLKpEY 65 (69)
T d2bbya_ 11 DMLFSAFEKHQYYNLKDLVDIT-----KQPVVYLKEILKEIGVQNVKGIHKNTWELKPEY 65 (69)
T ss_dssp HHHHHHHHHCSCBCHHHHHHHC-----CSCHHHHHHHHHHHCCEECCTTCCCEECCCCSS
T ss_pred HHHHHHHhhcCCCCHHHHHHHH-----hChHHHHHHHHHHHHHHHcCCCcCCceeCCHHH
Confidence 33444444444 4899988875 3478899999999999953 46799999874
No 2
>d2doaa1 a.4.5.81 (A:8-98) RNA polymerase II elongation factor ELL {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.19 E-value=8.3 Score=31.03 Aligned_cols=60 Identities=7% Similarity=0.151 Sum_probs=46.5
Q ss_pred HHHHHhcCCCcHHHHHHHHHHhCCCC-cHHHHHHHHHHhhhccCCCCceEecHhHHHHcCC
Q 006690 520 IVSVIQSCSTNMNKILEALQQKFPSI-SRAQLRNKVREISDFNFAENRWQVKREILIELGY 579 (635)
Q Consensus 520 Lv~~I~gs~~Sk~~LVEilqk~fP~v-SK~~IKNTIkEIAtr~~~~krW~VK~EvL~~~gL 579 (635)
+|..+-=.+.+...|+..+.+..-.. .+..|..-|.+||+++...+.|.+|++..+.++.
T Consensus 10 iIH~La~~p~~~sEL~~~l~~d~~~~~d~~~l~~iL~~Va~~~~~~g~Y~LK~~~~~Evdp 70 (91)
T d2doaa1 10 VLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAKDGTCTLQDCMYKDVQK 70 (91)
T ss_dssp HHHHHHHSCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHSSEECSSSCEEECCSSGGGGCCS
T ss_pred HHHHHHcCCCCHHHHHHHHHhcccccchHHHHHHHHHHHheecCCCceEeeHHHHHhHcCc
Confidence 34444456778888888887766443 3678999999999997777889999999998887
No 3
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.04 E-value=18 Score=27.78 Aligned_cols=43 Identities=14% Similarity=0.327 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHhCCCCcHHHHHHHHHHhhhc
Q 006690 518 PAIVSVIQSCSTNMNKILEALQQKFPSISRAQLRNKVREISDF 560 (635)
Q Consensus 518 p~Lv~~I~gs~~Sk~~LVEilqk~fP~vSK~~IKNTIkEIAtr 560 (635)
..++.+|++|.-.-+-=+..++++|++++.+.|++.|..+..=
T Consensus 9 ~~V~~~i~s~~~~eGi~~~el~~~l~~~~~~~i~~aid~L~~e 51 (69)
T d1dpua_ 9 NQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNE 51 (69)
T ss_dssp HHHHHHHHHCCCTTTEEHHHHHHHSTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCccCcCHHHHHHHccCCCHHHHHHHHHHHHhC
Confidence 3567888888754444467889999999999999999888754
No 4
>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=26.90 E-value=45 Score=27.42 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=36.5
Q ss_pred HHHHHHHhc---CCCcHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcc
Q 006690 518 PAIVSVIQS---CSTNMNKILEALQQKFPSISRAQLRNKVREISDFN 561 (635)
Q Consensus 518 p~Lv~~I~g---s~~Sk~~LVEilqk~fP~vSK~~IKNTIkEIAtr~ 561 (635)
..+++.+.. .++|...|.+.+++..|.++.++|=++|..+++-+
T Consensus 19 ~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~g 65 (134)
T d1mzba_ 19 VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 65 (134)
T ss_dssp HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhcc
Confidence 345566642 36899999999999999999999999999888763
No 5
>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.32 E-value=59 Score=24.87 Aligned_cols=30 Identities=33% Similarity=0.505 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHhhhc
Q 006690 531 MNKILEALQQKFPSISRAQLRNKVREISDF 560 (635)
Q Consensus 531 k~~LVEilqk~fP~vSK~~IKNTIkEIAtr 560 (635)
+.+|.|-|..++|+.|-+.|+..|...++|
T Consensus 15 kkkL~e~lr~k~P~as~~~l~~mVekrsdf 44 (69)
T d1kxpd3 15 KKKLAERLKAKLPDATPKELAKLVNKRSDF 44 (69)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHhHH
Confidence 678999999999999999999999999988
No 6
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.60 E-value=1.3e+02 Score=24.04 Aligned_cols=57 Identities=18% Similarity=0.300 Sum_probs=37.9
Q ss_pred HHHHhcCC---CcHHHHHHHHHHhCCCCc--HHHHHHHHHHhhhcc-------------CCCCceEecHhHHHHc
Q 006690 521 VSVIQSCS---TNMNKILEALQQKFPSIS--RAQLRNKVREISDFN-------------FAENRWQVKREILIEL 577 (635)
Q Consensus 521 v~~I~gs~---~Sk~~LVEilqk~fP~vS--K~~IKNTIkEIAtr~-------------~~~krW~VK~EvL~~~ 577 (635)
...|.++. +++..|-+.+..+||-|. ..--+|.|+..-.-+ .+...|.|.++....+
T Consensus 13 ~~Ai~~sp~~~ltL~eIy~~i~~~fpyfr~~~~gWkNSIRHnLS~n~~F~kv~r~~~~~gKg~~W~l~p~~~~~~ 87 (98)
T d2c6ya1 13 VQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKL 87 (98)
T ss_dssp HHHHHTSTTSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHHHSTTEEEECCCTTSCCSSCEEEECHHHHHHH
T ss_pred HHHHHhCCCCCccHHHHHHHHHHhCcccccCCCCcchhhchhcccccceEeccCCCCCCCCCceEEECccHHhhh
Confidence 35666655 467777777999999853 334677776655531 1356799999877653
No 7
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12, fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.37 E-value=41 Score=27.07 Aligned_cols=58 Identities=17% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHhcCC---CcHHHHHHHHHHhCCCCc------HHHHHHHHHHhhhccC---------CCCceEecHhHHHHc
Q 006690 520 IVSVIQSCS---TNMNKILEALQQKFPSIS------RAQLRNKVREISDFNF---------AENRWQVKREILIEL 577 (635)
Q Consensus 520 Lv~~I~gs~---~Sk~~LVEilqk~fP~vS------K~~IKNTIkEIAtr~~---------~~krW~VK~EvL~~~ 577 (635)
+...|.+++ +++..|-+.+..+||-|- |.+|++.+.--..|.+ +..-|.|.++....|
T Consensus 13 I~~AI~~sp~~~ltL~eIY~~i~~~fpyfr~~~~gWkNSIRHnLSln~~F~kv~~~~~~~gkg~~W~l~p~~~~~f 88 (94)
T d1d5va_ 13 ITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNECFVKVPRDDKKPGKGSYWTLDPDSYNMF 88 (94)
T ss_dssp HHHHHHTCSSSSBCHHHHHHHHHHHCTHHHHCCTTHHHHHHHHHHHCSSEEECCCCTTSCSCCCCEEECCSCSSTT
T ss_pred HHHHHHhCCCCCccHHHHHHHHHHHCCccCccccchHHHHHHHccccceEEEcCcCCCCCCCCceEEECccHHHHH
No 8
>d1q1va_ a.159.4.1 (A:) DEK C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.32 E-value=1.8e+02 Score=21.91 Aligned_cols=56 Identities=13% Similarity=0.277 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCCChHHHHHHHhcCCC----cHHHHHHHHHHhCCCCc----HHHHHHHHHHh
Q 006690 502 LSNGKGSTTLISESDLPAIVSVIQSCST----NMNKILEALQQKFPSIS----RAQLRNKVREI 557 (635)
Q Consensus 502 ~S~~Kk~kt~ipd~dLp~Lv~~I~gs~~----Sk~~LVEilqk~fP~vS----K~~IKNTIkEI 557 (635)
.+-.++.+.+-++++|..-+..|..... |...|...|-.+||++. |..|+..|..+
T Consensus 2 ~p~~~~~k~~ptd~ei~~~i~~IL~~aDL~tvT~K~IR~~LE~~~~g~dL~~rK~~I~~~I~~~ 65 (70)
T d1q1va_ 2 EPLIKKLKKPPTDEELKETIKKLLASANLEEVTMKQICKKVYENYPTYDLTERKDFIKTTVKEL 65 (70)
T ss_dssp CSCCCCCCCCCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHCSSSCCSHHHHHHHHHHHHH
T ss_pred ccccccccCCCCHHHHHHHHHHHHHhCCHHHhhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH
No 9
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=13.74 E-value=1.5e+02 Score=22.62 Aligned_cols=52 Identities=25% Similarity=0.367 Sum_probs=0.0
Q ss_pred HHHHHhcCC---CcHHHHHHHHHHhCCCC------cHHHHHHHHHHhhhccC----------CCCceEecH
Q 006690 520 IVSVIQSCS---TNMNKILEALQQKFPSI------SRAQLRNKVREISDFNF----------AENRWQVKR 571 (635)
Q Consensus 520 Lv~~I~gs~---~Sk~~LVEilqk~fP~v------SK~~IKNTIkEIAtr~~----------~~krW~VK~ 571 (635)
+...|.+++ +++..|-+-+..+||.| =|..|++.+.--..|.+ +..-|.|.|
T Consensus 5 I~~Ai~~sp~~~ltL~eIy~~i~~~fpy~r~~~~gWkNSIRHnLS~n~~F~kv~r~~~~~~gKg~~W~l~P 75 (75)
T d1kq8a_ 5 ITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRDPSRPWGKDNYWMLNP 75 (75)
T ss_dssp HHHHHTTSSSSCBCHHHHHHHHHHHCTTGGGTCSCCHHHHHHHHHHHTCCEECSSCSCCSSSCCCCEECCC
T ss_pred HHHHHHhCCCCCccHHHHHHHHHHhCcccccCCccchhHhhecccccceeEecCCCCCCCCCCccEEEeCc
No 10
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.57 E-value=1.4e+02 Score=23.21 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHhcCC---CcHHHHHHHHHHhCC--CCcHHHHHHHHHHhhhccC--------CCCceEecHhHHHH
Q 006690 519 AIVSVIQSCS---TNMNKILEALQQKFP--SISRAQLRNKVREISDFNF--------AENRWQVKREILIE 576 (635)
Q Consensus 519 ~Lv~~I~gs~---~Sk~~LVEilqk~fP--~vSK~~IKNTIkEIAtr~~--------~~krW~VK~EvL~~ 576 (635)
.+...|.++. +++..|-+.+.++|| .....--+|.|+..-.-+. ....|.|.++...+
T Consensus 10 LI~~Ai~~sp~~~LtL~eIy~~i~~~fpyyr~~~~gWkNSIRHnLS~n~~F~kv~~~kG~~W~i~~~~~~k 80 (82)
T d2a07f1 10 LIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCFVRVENVKGAVWTVDEVEYQK 80 (82)
T ss_dssp HHHHHHHHSTTSCBCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCTTBCCEECSSSEECCBCHHHHHH
T ss_pred HHHHHHHhCCCCCccHHHHHHHHHHhCcccccCCcccchhHhHhcccccceEeCCCCCCCEEEECHHHHhc
Done!