Query 006691
Match_columns 635
No_of_seqs 169 out of 236
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 13:05:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006691.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006691hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2225 Proteins containing re 100.0 3E-122 6E-127 958.3 30.1 588 1-635 1-644 (695)
2 PF09742 Dymeclin: Dyggve-Melc 100.0 7E-117 2E-121 1014.6 47.4 588 1-635 1-650 (678)
3 PF12722 Hid1: High-temperatur 100.0 2.3E-85 4.9E-90 772.0 28.9 504 1-597 1-600 (895)
4 KOG2226 Proteins containing re 100.0 5.7E-84 1.2E-88 700.1 28.3 499 1-600 1-555 (786)
5 PF08427 DUF1741: Domain of un 97.3 0.00089 1.9E-08 68.6 9.2 149 462-627 9-195 (237)
6 KOG4654 Uncharacterized conser 94.6 0.078 1.7E-06 52.0 6.2 77 556-632 99-210 (252)
7 PF03224 V-ATPase_H_N: V-ATPas 38.7 1.8E+02 0.0038 31.0 9.4 123 375-524 169-296 (312)
8 KOG1077 Vesicle coat complex A 31.0 1.4E+02 0.003 35.7 7.2 143 375-589 389-531 (938)
9 COG4321 Uncharacterized protei 25.9 75 0.0016 28.5 3.2 57 30-89 27-83 (102)
10 COG5111 RPC34 DNA-directed RNA 18.0 6.5E+02 0.014 26.2 8.4 46 549-604 165-216 (301)
No 1
>KOG2225 consensus Proteins containing regions of low-complexity [General function prediction only]
Probab=100.00 E-value=2.6e-122 Score=958.31 Aligned_cols=588 Identities=29% Similarity=0.479 Sum_probs=516.2
Q ss_pred CCCCCCcccccCCCCcchhHHHHHHhhCCccCCCCchhHHHhhcCCCCCCCCcc---------chHHHHHHHHHhcCCCc
Q 006691 1 MGGVPSTPRFADSRPQDTAEYLIATFVGEKSFPLASDFWQKLLELPLSLHWPSH---------RVHQACEAFAQNNCYTR 71 (635)
Q Consensus 1 MG~~~Sk~~~~~~~~~~~~~~l~~~L~~~~~I~~~D~FW~qfws~p~s~~~p~e---------~l~~~~~~l~~nN~~t~ 71 (635)
||...||-. ++.+|.|+ +||+|-++.+++|||||+++++. +..|.| ++++.||.++.||.+||
T Consensus 1 mg~~itk~~-----~l~~n~~l-kk~~g~~~~~d~d~fwn~ll~~~--l~~~d~~ed~i~les~ld~~~q~~~~n~~~tg 72 (695)
T KOG2225|consen 1 MGSVITKET-----VLQENIYL-KKLSGLEPVDDYDPFWNKLLSFS--LKFDDDDEDRIALESALDDHLQCLMYNTQTTG 72 (695)
T ss_pred CCcccchhh-----hcchhHHH-HHhcCCCcCccccHHHHhhhhee--eecCCCcHHHhhhHHHHHHHHHHHhcCCcccC
Confidence 999999976 88999999 99999888888889999999994 544432 68888999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCchH-HHHHHHHHHHHHHhhhhheecCChhhHHHhhccc---------------CCCC
Q 006691 72 HLAKILIHLTWCLQECISSSGTASVA-IMKAINAVYISSVFLKYLIENAESENFEELHLSL---------------DESE 135 (635)
Q Consensus 72 Nl~tLi~~l~~rl~~l~~~~~~~~~~-~~qalNclriLtriLpyl~E~~~~~~~~~~fw~~---------------~~~e 135 (635)
||+++|+.+.+|..|++.++++++.. .||+.||++|+|.+.+|+-|.++|.++.+.|-.. +++|
T Consensus 73 nf~a~i~~fl~r~tel~t~~~~e~~~~~wqt~nal~ilr~i~r~l~q~~te~e~~~~f~~~~~s~~~ess~~~~~~~~~d 152 (695)
T KOG2225|consen 73 NFAAFIRLFLRRATELKTSEQCENKIYLWQTSNALLILRYIARFLTQRMTEKEFVRIFAKSHESTETESSSTSSSSDEED 152 (695)
T ss_pred cHHHHHHHHHHHHHhhcchHhhhcceeehhhccHHHHHHHHHHHHHhhccHHHHHHHHHhCcchhhhhhhhhcccCCccc
Confidence 99999999999999999988766655 8999999999999999999999998765544321 1111
Q ss_pred CCC-----c------C---cccchhHHHHHHHhhcccccccCCCchhhhHHHHHHHHHHHHhhhhcCCCCCCCCCCCchh
Q 006691 136 PLP-----K------E---FVLDQNIENLVMHSVLSFIALVDVSPHTYNLHQELLNFMLVAMSTQLLSVPSLGPKDVHPF 201 (635)
Q Consensus 136 ~~~-----~------~---f~~~~~ve~~lweagvg~~~~vp~~~~t~~nr~EvLrlLLvllS~qLY~~~~~~~~~~~~~ 201 (635)
++. + . ...+.+.|.+ -.++|.+++.+|++..|+.+|+|++|||+|++|+|||... +.+.++.
T Consensus 153 ~~~~~~e~~~~~~a~~~~~iv~~~~~e~f-~~~lv~ili~i~v~e~t~~ih~eav~~l~tlLS~qLf~~~---~~~~SIv 228 (695)
T KOG2225|consen 153 DDEQKSENENNNGATKYIPIVFQNTAEEF-TYELVSILINISVNETTLAIHVEAVRCLLTLLSSQLFNES---IVNTSIV 228 (695)
T ss_pred chhHHhhccccCCccccceEEecccHHHH-HHHHHHheEEeeccceeehhhHHHHHHHHHHHHHHHhhhc---cccceeE
Confidence 100 0 0 1346788888 6699999999999999999999999999999999999985 5558888
Q ss_pred hHhhhcc-CccchHHHHHHHHHhhhcCCCCCCCCCcccccccCCCCcchhhhhhchhhhcccccccccccC----CCCCc
Q 006691 202 IDAAMTE-ESSLVCSVVRRLLLNYITRPRISVNSSSYSIFSEENQPGVLQRVGSAAATIVLLPFNYLVSSN----GEGSS 276 (635)
Q Consensus 202 l~~~~~~-~~~~~~~L~~SLL~n~i~~~~~p~~~~~y~~~~d~~~~g~~~~~gs~~~~~~~lpy~~l~~~~----~~d~~ 276 (635)
+++++.+ +.+|+..|+++||.|+++++++|+. .+..+.+||+++|++++.|++|.+-...-+.++ +.+-.
T Consensus 229 fr~~~~g~C~~ha~~L~ktLL~n~~r~~~~pH~-----~~q~s~~Gs~vfGlAss~~siftv~~~~gi~~~~aa~~peLs 303 (695)
T KOG2225|consen 229 FRFFIDGSCAKHAASLTKTLLLNYLRHNSEPHM-----TVQKSQEGSIVFGLASSMWSIFTVQMATGIDSAEAAKKPELS 303 (695)
T ss_pred EEeeecCchHHHHHHHHHHHHHHHHHhcCCCcc-----cccCCCCCceeeehhhHHHHHHHhhhccCcchhhhccCCCCC
Confidence 9999986 4789999999999999999998864 345566778999999999887777654333321 22345
Q ss_pred chHHHHHHHHHHHHhhcCCCCCCCCCcccCCCCCCCcccccccCCCCCCChHHHHhhcccccccccccccCCCCCC-Ccc
Q 006691 277 NPLTDCSLLVLLVLIHYHKCVENDESITDRSDDSATSDSLAKSSTHFTVNPYCNALENARDIEFGHMDLEGNAHSG-PVV 355 (635)
Q Consensus 277 ~~L~~~slqlLlvLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~fr~~L~~~~D~~f~~~~~~~~~~~~-~~~ 355 (635)
.||+++|+++||+|.+|++- ...||||+.|+.++|.|. ...-|..| ..+
T Consensus 304 ~PLaNqSlLLlL~Lsnh~~a--------------------------~dsNpyr~tl~sf~n~qd----ss~~P~qg~vsF 353 (695)
T KOG2225|consen 304 LPLANQSLLLLLNLSNHQPA--------------------------NDSNPYRETLASFQNAQD----SSTLPTQGIVSF 353 (695)
T ss_pred ccccchhHHHHHHHhcCCCc--------------------------ccCCHHHHHHHHhhcccc----cCCCCCCCceEE
Confidence 69999999999999998432 145999999999999882 23334333 379
Q ss_pred cccchhHHHHhcccCCchhHHHHHHHHhhcCccchhhhhcccchhhhHHHHHHHHHhcccCCCCchHHHHHHHHHhcCCc
Q 006691 356 RLPFASLFDTLGMYLADETAVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKTPNQIYMLLIILLILSQDS 435 (635)
Q Consensus 356 ~i~f~~l~~~~~~~~~~e~~~lLLy~ll~~N~~F~~~vl~~~~~~~lv~plL~~ly~~~~~~s~~v~m~l~iLL~LS~d~ 435 (635)
+|+|+++|+++|.+.++|+.++|||.|||.|++||+|+++|.|++++|+|||++||++++++||||||.+|+|||||+|+
T Consensus 354 qIdfn~lYe~LC~~~t~dqatLLLY~LLh~Ns~fr~yvl~r~dlEnLVvPiL~iLy~a~~~NSHHvYmaLIvlLILsEDd 433 (695)
T KOG2225|consen 354 QIDFNGLYERLCATATQDQATLLLYMLLHANSGFRNYVLSRIDLENLVVPILRILYDATSNNSHHVYMALIVLLILSEDD 433 (695)
T ss_pred EEehHHHHHHHHHHhccchhHHHHHHHHhccccHHHHHHhhccHHHhHHHHHHHHhcCCcCCccchHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccCCCcccccccccccCchhHHHHHHHHHHhhccccccccccchhHHHHHhhhhhhhccCCHHHHHHHHHH
Q 006691 436 SFNASIHKMILPSVPWYKEHLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVHRLSAYASQRLVSL 515 (635)
Q Consensus 436 ~F~~~l~~~~l~~ipw~~er~~~~~S~gdLlIlvl~r~I~~n~~~l~~~ylh~~cLa~LaN~sp~~~~Ls~~asqrLv~L 515 (635)
+|||.+|++++++|.||+||.++++|+|+++|+|++|+|||||.|+||+||||||||+|||||.+||+||+|+||||++|
T Consensus 434 gFnk~iHe~mlKnitWyser~v~EISLGglliLvviRtIQyNmlktRDkYLHTNCLAALANMSa~Fr~LhpyvaQRliSL 513 (695)
T KOG2225|consen 434 GFNKIIHETMLKNITWYSERSVREISLGGLLILVVIRTIQYNMLKTRDKYLHTNCLAALANMSAFFRNLHPYVAQRLISL 513 (695)
T ss_pred hhhHHHHHHHHhhccceecceeeeeeccceeeeeeHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccC-CCCCCC-CchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhHhhhccccccccC
Q 006691 516 FYMLSRKYNKIADRRDDKK-GNLTEQ-DSFAEDMSAELHIYTDFLRIVLEILNAILTYALPRNPEVVYAILHREEVFQPF 593 (635)
Q Consensus 516 f~~ls~~~~~l~~~~~~~~-~~~~e~-~~~~~d~~~e~~~~~~~l~~lLEiiNsiL~~~~~~N~~LVYalL~~r~~F~~l 593 (635)
|+.++||+.|+.++++.+. +....+ .+..+|+.+|+.++|+++||+||||||||++++++||||||++||||++|+++
T Consensus 514 f~lLtkkH~k~~~q~~~s~~~~v~~nvst~P~d~~qDl~vlEEviRm~LEIiNScLtn~L~hnpnLvY~LLYkR~lFe~f 593 (695)
T KOG2225|consen 514 FDLLTKKHAKMVDQMRVSSQNDVADNVSTQPIDFHQDLTVLEEVIRMLLEIINSCLTNGLRHNPNLVYNLLYKRALFEAF 593 (695)
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCCCCchhhHhhHHHHHHHHHHHHHHHHHHhhCccccCchHHHHHHHHHHHHHHH
Confidence 9999999999999887652 222222 22336899999999999999999999999999999999999999999999999
Q ss_pred cCCcchHHHHhhHHHHHHHhhhhHHH---------HHHHHHhhhcccccCC
Q 006691 594 KSHPRFNELLENIYTVSRWFLCQNLY---------ILSYIKYLDLAYHKDR 635 (635)
Q Consensus 594 ~~~~~f~~~~~ni~~v~~~f~~~~~~---------~l~~i~~~~~~~~~~~ 635 (635)
|+||+|||++|||+.|++||++|+.+ +|++|.+++-.||+||
T Consensus 594 r~Hp~FQD~lqNId~V~~~fssk~~~V~e~~g~~~~L~ii~k~a~~w~tdr 644 (695)
T KOG2225|consen 594 RQHPMFQDLLQNIDAVISHFSSKVIHVPEGDGGSTMLQIIEKEANIWPTDR 644 (695)
T ss_pred hhChhHHHHHHHHHHHHHhhhhheeeccccccchhHHHHHhcccccCchhh
Confidence 99999999999999999999999986 9999999999999998
No 2
>PF09742 Dymeclin: Dyggve-Melchior-Clausen syndrome protein; InterPro: IPR019142 Dymeclin (Dyggve-Melchior-Clausen syndrome protein) contains a large number of leucine and isoleucine residues and a total of 17 repeated dileucine motifs. It is characteristically about 700 residues long and present in plants and animals. In humans, mutations in the gene coding for this protein give rise to a disorder called Dyggve-Melchior-Clausen syndrome (DMC, MIM 223800), which is an autosomal-recessive disorder characterised by the association of spondylo-epi-metaphyseal dysplasia and mental retardation []. This entry also includes Hid1 (high-temperature-induced dauer-formation protein 1) from Caenorhabditis elegans which encodes a novel highly conserved putative transmembrane protein expressed in neurons []. It contains up to seven potential transmembrane domains separated by regions of low complexity. Functionally this protein might be involved in vesicle secretion or be an inter-cellular signalling protein or be a novel insulin receptor [].
Probab=100.00 E-value=7.4e-117 Score=1014.56 Aligned_cols=588 Identities=39% Similarity=0.607 Sum_probs=518.8
Q ss_pred CCCCCCcccccCCCCcchhHHHHHHhhCCccCC-CCchhHHHhhcCCCCCCCCcc--------chHHHHHHHHHhcCCCc
Q 006691 1 MGGVPSTPRFADSRPQDTAEYLIATFVGEKSFP-LASDFWQKLLELPLSLHWPSH--------RVHQACEAFAQNNCYTR 71 (635)
Q Consensus 1 MG~~~Sk~~~~~~~~~~~~~~l~~~L~~~~~I~-~~D~FW~qfws~p~s~~~p~e--------~l~~~~~~l~~nN~~t~ 71 (635)
||++.||.+ +++.|+++ +||+|+++|| .+|+||+|||++|.+..++.+ +++++||.+++||++||
T Consensus 1 MGa~~S~~~-----~l~~~~~l-~~l~g~~~i~~~~d~FW~qLlsf~~~~p~~s~d~~~ll~~~~~~~~~~L~~nN~~Tg 74 (678)
T PF09742_consen 1 MGASSSKEA-----KLSFNEAL-KRLVGEQPIPPDDDPFWNQLLSFSISPPTSSEDQFELLEEALEPLCQSLVPNNLATG 74 (678)
T ss_pred CCCCcCCcc-----cchhHHHH-HHhcCCCCCCCcchHHHHHHHcccCCCCCChHHHHHHhHHHHHHHHHhhcccCcccc
Confidence 999999976 78899997 9999999999 666999999999755444433 67888999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhhhheecCChhhHHHhhcccCCCCC---CCc---------
Q 006691 72 HLAKILIHLTWCLQECISSSGTASVAIMKAINAVYISSVFLKYLIENAESENFEELHLSLDESEP---LPK--------- 139 (635)
Q Consensus 72 Nl~tLi~~l~~rl~~l~~~~~~~~~~~~qalNclriLtriLpyl~E~~~~~~~~~~fw~~~~~e~---~~~--------- 139 (635)
||++|++++.+|+.++..+++..+ ++||+||+|+++||++|.+++++|.++||+.++.+. .+.
T Consensus 75 n~~~Li~~~l~~~~el~~s~~~~~-----~~Nal~ilr~~lkyliE~~se~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~ 149 (678)
T PF09742_consen 75 NFRALIRVFLSRLSELKASSECQD-----AINALFILRRFLKYLIENGSEEELLGHFWHPDPSEGSRPLASSLFSALSDL 149 (678)
T ss_pred CHHHHHHHHHHHHhhhhcccchhH-----HHHHHHHHHHHHHHHhhcCCHHHHHHHHhcCCCcccccccccchhhhhccc
Confidence 999999999999999988776554 999999999999999999999999999999765511 000
Q ss_pred -----------------CcccchhHHHHHHHhhcccccccCCCchhhhHHHHHHHHHHHHhhhhcCCCCCCCCCCCchhh
Q 006691 140 -----------------EFVLDQNIENLVMHSVLSFIALVDVSPHTYNLHQELLNFMLVAMSTQLLSVPSLGPKDVHPFI 202 (635)
Q Consensus 140 -----------------~f~~~~~ve~~lweagvg~~~~vp~~~~t~~nr~EvLrlLLvllS~qLY~~~~~~~~~~~~~l 202 (635)
+...++.+|++ |++||++++++|+++.||.+|+|+++|||||+|+|||++++..+ .++|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l-~~alv~~i~~~p~~~~t~~lh~E~l~lLLvllS~qLy~~~~~~~--~~~~~ 226 (678)
T PF09742_consen 150 LFCPDFTVMSKSEEGSESLSSEDSAEYL-LEALVGFIVSVPVNDATYALHLEALNLLLVLLSSQLYHPPSSEQ--SSPFL 226 (678)
T ss_pred ccccchhhhccccccccccccccHHHHH-HHHhcccccCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCcccc--ccHHH
Confidence 01235778877 99999999999999999999999999999999999999976554 79999
Q ss_pred HhhhccCccchHHHHHHHHHhhhcCCCCCCCCCcccccccCCCCcchhhhhhchhhhcccccccccccCCCCCcchHHHH
Q 006691 203 DAAMTEESSLVCSVVRRLLLNYITRPRISVNSSSYSIFSEENQPGVLQRVGSAAATIVLLPFNYLVSSNGEGSSNPLTDC 282 (635)
Q Consensus 203 ~~~~~~~~~~~~~L~~SLL~n~i~~~~~p~~~~~y~~~~d~~~~g~~~~~gs~~~~~~~lpy~~l~~~~~~d~~~~L~~~ 282 (635)
+++|+.+++++..++++||+|+++|.++|.+ .+|.+|+++.++|++.|+|+++|+.+...+ ....+..+++++||+++
T Consensus 227 ~~~~~~~s~~a~~l~~sLL~~~~~~~~~~~~-~~~~l~~~~~~~s~l~gi~s~~~s~l~~~~-~~~~~~~~~~~~pLa~~ 304 (678)
T PF09742_consen 227 DSLMSSCSPHASALVRSLLNNFIRQDPVPPP-YTHLLFSDGSQGSILYGIASASWSLLDNFY-GSSPSSSEESRSPLANQ 304 (678)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhcCCcccc-cccccccCCCCchHHHHHHHHHHHHhhccc-cccccCcccCcCCHHHH
Confidence 9999978999999999999999999998763 256688889999999999999888663233 23334456889999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCcccCCCCCCCcccccccCCCCCCChHHHHhhccccccc--ccccccCCCC-CCCcccccc
Q 006691 283 SLLVLLVLIHYHKCVENDESITDRSDDSATSDSLAKSSTHFTVNPYCNALENARDIEF--GHMDLEGNAH-SGPVVRLPF 359 (635)
Q Consensus 283 slqlLlvLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~fr~~L~~~~D~~f--~~~~~~~~~~-~~~~~~i~f 359 (635)
|+|+||||++|+++. ..+.||||.+|.++.|.++ ....+.+.+. ....++++|
T Consensus 305 SllLLLvL~~~~~~~------------------------~~~~Np~r~al~~~~d~~~~~~~~~~~~~~~~~~~~~~i~f 360 (678)
T PF09742_consen 305 SLLLLLVLVNHCSPP------------------------SSKGNPYREALFSFSDIQDEDFDFDSSGISSSLVNSFKINF 360 (678)
T ss_pred HHHHHHHHHcCCCcc------------------------ccCCChHHHHHHhhhcchhccccccccccccccccceeecH
Confidence 999999999996651 1268999999999988876 1112223332 234789999
Q ss_pred hhHHHHhcccCCchhHHHHHHHHhhcCccchhhhhcccchhhhHHHHHHHHHhcccC--CCCchHHHHHHHHHhcCCchh
Q 006691 360 ASLFDTLGMYLADETAVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKK--TPNQIYMLLIILLILSQDSSF 437 (635)
Q Consensus 360 ~~l~~~~~~~~~~e~~~lLLy~ll~~N~~F~~~vl~~~~~~~lv~plL~~ly~~~~~--~s~~v~m~l~iLL~LS~d~~F 437 (635)
..||+++|+...+++.++|||+|||.|++|++||++++|++++|+|||+++|+++++ .+||+||++||||+||||++|
T Consensus 361 ~~L~~s~~~~~~~~~~~lLLY~LL~~N~~F~~~vls~~d~~~lv~piL~~ly~~~~~~~~~~~~~m~l~iLLiLSqd~~f 440 (678)
T PF09742_consen 361 TALYNSLCKSLSHDELLLLLYKLLHRNPNFLNYVLSRSDLDNLVLPILQILYDAREDFSNSHHIYMALIILLILSQDDSF 440 (678)
T ss_pred HHHHHHHHHhhCCcchHHHHHHHHhcCHHHHHHHhcchhHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHHcCchHH
Confidence 999999999999999999999999999999999999999999999999999999999 889999999999999999999
Q ss_pred hhhhhccccCCCcccccccccccCchhHHHHHHHHHHhhccccccccccchhHHHHHhhhhhhhccCCHHHHHHHHHHHH
Q 006691 438 NASIHKMILPSVPWYKEHLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVHRLSAYASQRLVSLFY 517 (635)
Q Consensus 438 ~~~l~~~~l~~ipw~~er~~~~~S~gdLlIlvl~r~I~~n~~~l~~~ylh~~cLa~LaN~sp~~~~Ls~~asqrLv~Lf~ 517 (635)
|+++|+++++++|||+||.+.++|+|||+|+|++|+|++|+.|++|+|||++|||+|+|||||+++||+|||||||+||+
T Consensus 441 ~~~~~~~~~~~~~w~~er~~~~~Slg~Llvlvl~r~i~~n~~~~~d~~L~~~~la~LaN~sp~~~~l~~y~aqrLv~L~~ 520 (678)
T PF09742_consen 441 NRSLHETIIKNVPWYTERSLFEISLGSLLVLVLIRTIQYNLSRLRDEYLHTNCLAILANMSPYFKSLHPYAAQRLVSLLE 520 (678)
T ss_pred HHHhhhcccCCCCccccccccccCHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhccHhhcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhHhhhccccccccCcC--
Q 006691 518 MLSRKYNKIADRRDDKKGNLTEQDSFAEDMSAELHIYTDFLRIVLEILNAILTYALPRNPEVVYAILHREEVFQPFKS-- 595 (635)
Q Consensus 518 ~ls~~~~~l~~~~~~~~~~~~e~~~~~~d~~~e~~~~~~~l~~lLEiiNsiL~~~~~~N~~LVYalL~~r~~F~~l~~-- 595 (635)
.++|||+|+++......++..+. + +.+++++++||+||||||+||+|++++||+|||+|||+|++|+++++
T Consensus 521 ~ls~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~lr~lleiins~L~~~l~~N~~LvY~ll~~r~~f~~~~~l~ 593 (678)
T PF09742_consen 521 LLSKKYFKLSSQANHSSGSSRTS----D---DDLQVLEEVLRLLLEIINSILTYQLRHNPNLVYALLYKREVFEQLRNLD 593 (678)
T ss_pred HHHHHHHHHHhhhhccccccccc----h---hhHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999988765532222221 1 23688999999999999999999999999999999999999999999
Q ss_pred ----CcchHHH-HhhHHHHHHHhhhhHHH------------HHHHHHhhhcccccCC
Q 006691 596 ----HPRFNEL-LENIYTVSRWFLCQNLY------------ILSYIKYLDLAYHKDR 635 (635)
Q Consensus 596 ----~~~f~~~-~~ni~~v~~~f~~~~~~------------~l~~i~~~~~~~~~~~ 635 (635)
||.|+++ +|||++||+||++++++ ||++||++...||+|+
T Consensus 594 ~~~~~~~~~~~~l~ni~~vi~~f~~~v~~~~~~~~~~s~~~vl~~i~~~~~~~~~~~ 650 (678)
T PF09742_consen 594 PVSIHPWFQDLPLQNIDRVIQFFSSRVESICADKGELSVSEVLEVIRKGTLVWPTDP 650 (678)
T ss_pred cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHhhhhcCCCC
Confidence 9999999 99999999999999986 9999999999999986
No 3
>PF12722 Hid1: High-temperature-induced dauer-formation protein
Probab=100.00 E-value=2.3e-85 Score=771.99 Aligned_cols=504 Identities=25% Similarity=0.363 Sum_probs=417.1
Q ss_pred CCCCCCcccccCCCCcchhHHHHHHhhCCccC--CCCch-hHHHhhcCCCCCCCCccchHHH--HHHHHHhcCCCccHHH
Q 006691 1 MGGVPSTPRFADSRPQDTAEYLIATFVGEKSF--PLASD-FWQKLLELPLSLHWPSHRVHQA--CEAFAQNNCYTRHLAK 75 (635)
Q Consensus 1 MG~~~Sk~~~~~~~~~~~~~~l~~~L~~~~~I--~~~D~-FW~qfws~p~s~~~p~e~l~~~--~~~l~~nN~~t~Nl~t 75 (635)
||+++||++|| ++ |+||++++.| |.+|+ ||++||+.|++..+..+ +.+. ++.++++| +.||++
T Consensus 1 MG~sdsKl~fr--------~~-i~~L~~~~~~~~~~dd~~fw~~fw~~~~s~~Dvf~-Li~~~diR~ir~~~--~~Nl~t 68 (895)
T PF12722_consen 1 MGNSDSKLNFR--------KH-IFKLAQERIIVDPDDDAFFWDQFWELPTSAEDVFS-LISPADIRRIRDEN--PENLAT 68 (895)
T ss_pred CCchhhHHHHH--------HH-HHHHcCCCcCCCCcccHHHHHHHHcCCCCHHHHHh-cCCHHHHHHHHHHC--HHHHHH
Confidence 99999999998 23 4999999998 88887 99999999876665555 3222 45555666 699999
Q ss_pred HHHHHHHHHHHHHhcCCCCc--hHHHHHHHHHHHHHHhhhhheecCChhhHHH-hhcccCCCC-----------------
Q 006691 76 ILIHLTWCLQECISSSGTAS--VAIMKAINAVYISSVFLKYLIENAESENFEE-LHLSLDESE----------------- 135 (635)
Q Consensus 76 Li~~l~~rl~~l~~~~~~~~--~~~~qalNclriLtriLpyl~E~~~~~~~~~-~fw~~~~~e----------------- 135 (635)
||+++++|+++++++++.++ ...++++|||||||||+||+||....++|++ |||+.....
T Consensus 69 Li~~~~~~l~~~~~~~~~~~~~~~~~~~LNciRiLTRilP~i~E~~~~~~~~~~~fW~~~~~~~~~~~~~~~~~~~~~~~ 148 (895)
T PF12722_consen 69 LIRKLVERLVQLANSPSFPSTPAPKQELLNCIRILTRILPFIFEADYDEEWEEEFFWSSRPKPSRGAQSASEVLFDEASS 148 (895)
T ss_pred HHHHHHHHHHHHhcCccccccchhhhHHHHHHHHHHHhhhHhhcccccccchhccccCCCCccccccccccccccccccc
Confidence 99999999999999998743 3367999999999999999999766778997 999853220
Q ss_pred -CCCc---C-------------ccc----------chhHHHHHHHhhcccccccCC-CchhhhHHHHHHHHHHHHhhhhc
Q 006691 136 -PLPK---E-------------FVL----------DQNIENLVMHSVLSFIALVDV-SPHTYNLHQELLNFMLVAMSTQL 187 (635)
Q Consensus 136 -~~~~---~-------------f~~----------~~~ve~~lweagvg~~~~vp~-~~~t~~nr~EvLrlLLvllS~qL 187 (635)
+.+. . |++ .++++|.|||+|||+..+.+. +.+.++||+|||||||||||++|
T Consensus 149 ~~~~~~~~pLg~~Ll~al~dLLF~~gFTv~~~~~~~~~~~~~iWe~GIg~~~~~~~~~~~~dsNR~EvLrLLLtl~S~~l 228 (895)
T PF12722_consen 149 EEDDEQSPPLGERLLDALVDLLFCPGFTVPSSSSSPDKVSYSIWEPGIGTNTSPPSPNKEHDSNRTEVLRLLLTLFSEPL 228 (895)
T ss_pred cccccCCCCHHHHHHHHHHHHhCCCCCcCCCccCCCCccceeeccCccccCCCCCCCCHHHHHHHHHHHHHHHHHhchhh
Confidence 0000 0 333 346678789999999999997 88999999999999999999999
Q ss_pred CCCCCCCCCCCchhhHhhhccC-ccchHHHHHHHHHhhhcCCCCCCCCCcccccccCCC---Ccchhhhhhchhhhcccc
Q 006691 188 LSVPSLGPKDVHPFIDAAMTEE-SSLVCSVVRRLLLNYITRPRISVNSSSYSIFSEENQ---PGVLQRVGSAAATIVLLP 263 (635)
Q Consensus 188 Y~~~~~~~~~~~~~l~~~~~~~-~~~~~~L~~SLL~n~i~~~~~p~~~~~y~~~~d~~~---~g~~~~~gs~~~~~~~lp 263 (635)
|.+|+ ....+++|+.++++.. ++.+++|+|||||+++++ ||.+ +| +|
T Consensus 229 Y~~~~-~~~~~~~~l~~l~s~~~~~~~l~L~~SLlNt~~~y--------------~p~~~~~~~--------------lp 279 (895)
T PF12722_consen 229 YQPPS-LSSTGNKFLTYLVSCTPRQLVLTLLCSLLNTVCRY--------------DPSGNEEWG--------------LP 279 (895)
T ss_pred cCCCc-cCCCCCeeeeeeccCcchhhhHHHHHHHHHHHHhc--------------CCCCccccc--------------cc
Confidence 99998 7778999999999876 455999999998777664 4444 45 89
Q ss_pred cccccccCCCCCcchHHHHHHHHHHHHhhcCCCCCCCCCcccCCCCCCCcccccccCCCCCCChHHHHhhccc---cccc
Q 006691 264 FNYLVSSNGEGSSNPLTDCSLLVLLVLIHYHKCVENDESITDRSDDSATSDSLAKSSTHFTVNPYCNALENAR---DIEF 340 (635)
Q Consensus 264 y~~l~~~~~~d~~~~L~~~slqlLlvLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~fr~~L~~~~---D~~f 340 (635)
|++++++ |.+++||..|+|+|+|+++|+.+...+..... . ........+|.||+||+|+| ||+|
T Consensus 280 Y~~~~~~---d~r~~lV~~slQlL~vlL~y~~~~~~~~~~~~--------~--~~~~~~~~~N~~r~yl~~lhr~~D~~f 346 (895)
T PF12722_consen 280 YNHLVFS---DSREPLVTYSLQLLNVLLDYPPPSQTNSSFSS--------E--TNLTSSKPKNLFRNYLSKLHREEDFQF 346 (895)
T ss_pred ccccccc---CcccHHHHHHHHHHHHheeCCCCCCCcccccc--------c--cCcCCCCcchHHHHHHhccCcHHHHHH
Confidence 9999998 99999999999999999999876432211110 0 00001347899999999885 9999
Q ss_pred c---cccccCCCC-----------------CCCcccccchhHHHHhcccCCchhHHHHHHHHhhcCccchhhhhcccchh
Q 006691 341 G---HMDLEGNAH-----------------SGPVVRLPFASLFDTLGMYLADETAVLLLYSLVQGNSGFLEYVLVRTDLD 400 (635)
Q Consensus 341 ~---~~~~~~~~~-----------------~~~~~~i~f~~l~~~~~~~~~~e~~~lLLy~ll~~N~~F~~~vl~~~~~~ 400 (635)
+ +.+++++|. |++.+++.|+ +| ++||||+|+++||+|++|+++ .++.
T Consensus 347 i~~gl~~iL~~pl~~~~~~es~~f~~~~~lp~s~~~~~~~-----------~e-~l~l~W~l~~~Nk~F~~~v~~-~~~~ 413 (895)
T PF12722_consen 347 ILDGLTRILNNPLQSAIEQESNPFSSSSYLPGSQKPSPWA-----------QE-LLMLFWELIQCNKRFRNYVLD-KRAL 413 (895)
T ss_pred HHHHHHHHHHhhhhhhhhccccccccccccccccccchHH-----------HH-HHHHHHHHHhhCHHHHHHHhh-ccHH
Confidence 8 455666653 4667888887 55 999999999999999999999 8999
Q ss_pred hhHHHHHHHHHhcccCCC--CchHHHHHHHHHhcCCchhhhhhhccccC----CCcccccccccccCchhHHHHHHHHHH
Q 006691 401 TLLMPILETLYNASKKTP--NQIYMLLIILLILSQDSSFNASIHKMILP----SVPWYKEHLLHQTSLGSLLVIILIRTV 474 (635)
Q Consensus 401 ~lv~plL~~ly~~~~~~s--~~v~m~l~iLL~LS~d~~F~~~l~~~~l~----~ipw~~er~~~~~S~gdLlIlvl~r~I 474 (635)
++++|+|+++.+.+.+++ +.++||+||||+||+++.||++||+++-. .+|-+.+=-...|||+||+|+++|++|
T Consensus 414 ~llv~llyy~~~~~~~~~~~glv~i~~fill~LS~e~~f~~~Ln~p~~~~~~~~lP~~~~i~~~~gT~~DflI~~i~~ii 493 (895)
T PF12722_consen 414 DLLVPLLYYLLEYRDDPSKQGLVRICSFILLYLSSERNFGVKLNKPFSAYYQNSLPNSFKIPVFPGTYADFLIISICNII 493 (895)
T ss_pred HHHHHHHHHHHHhcCChhhcccHHHHHHHHHHHccchHHHHHhccccchhhcccCCCccccCCCCCcHHHHHHHHHHHHH
Confidence 999999999999998876 56799999999999999999999999844 444111111128999999999999999
Q ss_pred hhccccccccccchhH-HHHHhhhhhh---------hccCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchh
Q 006691 475 KYNLSKLRDVYLHTTC-LATLANMAPH---------VHRLSAYASQRLVSLFYMLSRKYNKIADRRDDKKGNLTEQDSFA 544 (635)
Q Consensus 475 ~~n~~~l~~~ylh~~c-La~LaN~sp~---------~~~Ls~~asqrLv~Lf~~ls~~~~~l~~~~~~~~~~~~e~~~~~ 544 (635)
.++.+++..+| +| +++|+|+||| +++|++.||.||++||+.||+|.++++.
T Consensus 494 ~~~~~~~~~l~---~~l~~il~Ni~p~~~s~~~~~~~~~LS~~as~~L~~L~~~~S~p~fL~~~---------------- 554 (895)
T PF12722_consen 494 TTSHGRLSSLY---PCLLEILYNISPYTLSSKKSSNLKGLSYVASSKLLQLFSKFSSPSFLLSN---------------- 554 (895)
T ss_pred hcCCcccccHH---HHHHHHHHhcccccccchhhhhhcCcCHHHHHHHHHHHHHhcChHHHhcC----------------
Confidence 99999999999 88 9999999999 9999999999999999999998886742
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhHhhhccccccccCcCCc
Q 006691 545 EDMSAELHIYTDFLRIVLEILNAILTYALPRNPEVVYAILHREEVFQPFKSHP 597 (635)
Q Consensus 545 ~d~~~e~~~~~~~l~~lLEiiNsiL~~~~~~N~~LVYalL~~r~~F~~l~~~~ 597 (635)
+.| .++|++|||+||++|+||+.+|++|||+|+|+|++|+++++.+
T Consensus 555 -----~~n--~~ll~~LL~a~n~~i~~~~~~n~~Lvyailr~~~~f~~L~~~~ 600 (895)
T PF12722_consen 555 -----EFN--HDLLALLLEAFNNIIQYQFSGNPNLVYAILRNRKVFEQLRNFT 600 (895)
T ss_pred -----Cch--HHHHHHHHHHHHHHHHhccccchHHHHHHHhhHHHHHHHHHhh
Confidence 112 2899999999999999999999999999999999999999876
No 4
>KOG2226 consensus Proteins containing regions of low-complexity [General function prediction only]
Probab=100.00 E-value=5.7e-84 Score=700.06 Aligned_cols=499 Identities=21% Similarity=0.299 Sum_probs=414.6
Q ss_pred CCCCCCcccccCCCCcchhHHHHHHhhCCccCCCCchhHHHhhcCCCCCCCCcc-chHHHHHHHHHhcCCCccHHHHHHH
Q 006691 1 MGGVPSTPRFADSRPQDTAEYLIATFVGEKSFPLASDFWQKLLELPLSLHWPSH-RVHQACEAFAQNNCYTRHLAKILIH 79 (635)
Q Consensus 1 MG~~~Sk~~~~~~~~~~~~~~l~~~L~~~~~I~~~D~FW~qfws~p~s~~~p~e-~l~~~~~~l~~nN~~t~Nl~tLi~~ 79 (635)
||+++||++|| +.|.|+. .+.||.+|.||+|+|+.|++..++.+ -..+-++..+.|+ +.|++||+++
T Consensus 1 MGsqeSKl~Fr---------~aIlrl~-q~~~p~ddeiWe~lWt~peT~~dVF~~i~~~dIR~~RD~a--p~NLatLl~v 68 (786)
T KOG2226|consen 1 MGSQESKLDFR---------HAILRLT-QKNIPEDDEIWEQLWTCPETENDVFAFISAQDIRKCRDNA--PDNLATLLYV 68 (786)
T ss_pred CCcccccchHH---------HHHHHHh-cCCCCcHHHHHHHHhcCCCcchHHHHhcCHHHHHHHhhcC--hHHHHHHHHH
Confidence 99999999998 4568888 88899999999999999977665554 1122245666655 7999999999
Q ss_pred HHHHHHHHHhcCCCCchH-HHHHHHHHHHHHHhhhhheecCChhhHHHhhcccCCCCCC---Cc------C-----c---
Q 006691 80 LTWCLQECISSSGTASVA-IMKAINAVYISSVFLKYLIENAESENFEELHLSLDESEPL---PK------E-----F--- 141 (635)
Q Consensus 80 l~~rl~~l~~~~~~~~~~-~~qalNclriLtriLpyl~E~~~~~~~~~~fw~~~~~e~~---~~------~-----f--- 141 (635)
+++||+.+.+...++... ...|+||+|+|||++||+||..+.++|.+.||...++.++ |- + |
T Consensus 69 ~v~kL~~lqn~~~~p~~~~~~~aLNciRLLTRllPyl~E~~~~~eW~~~Fw~slpk~~d~~~PL~~~llns~~dLlf~~d 148 (786)
T KOG2226|consen 69 LVEKLVSLQNKFSEPATAKQKCALNCIRLLTRLLPYLFESTNDEEWRDYFWWSLPKTVDDLKPLAASLLNSFSDLLFLPD 148 (786)
T ss_pred HHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHHHhccccHHHHHHHhhhcCcCCCCccCchhHHHHHHHhhhhhccc
Confidence 999999999877544433 6789999999999999999999999999988776553211 11 0 1
Q ss_pred -----------------ccchhHHHHHHHhhcccccccCCCchhhhHHHHHHHHHHHHhhhhcCCCCCCCCCCCchhhHh
Q 006691 142 -----------------VLDQNIENLVMHSVLSFIALVDVSPHTYNLHQELLNFMLVAMSTQLLSVPSLGPKDVHPFIDA 204 (635)
Q Consensus 142 -----------------~~~~~ve~~lweagvg~~~~vp~~~~t~~nr~EvLrlLLvllS~qLY~~~~~~~~~~~~~l~~ 204 (635)
...+.|||+ ||+|||+....|.+...+.+|+|++||||||+|+.||...+.. ..+.|..+
T Consensus 149 fTi~~~~~~~~~~~k~~~siesC~~I-WEaGVg~~et~~~~~~~~~~R~EvLrLLL~lfSe~lY~rsdE~--~ss~~~~~ 225 (786)
T KOG2226|consen 149 FTITLCFQHNFTKIKELSSIESCEYI-WEAGVGIPETPPKPAYDERHRTEVLRLLLVLFSETLYDRSDEL--DSSVLNYI 225 (786)
T ss_pred cchhhhhhcCcchhhhhcchhHHHHH-HhcccCCCCCCCCchHHHHHHHHHHHHHHHHhhHHHHhccccc--CceeEEEE
Confidence 123567766 9999999988887777777999999999999999999543222 24577777
Q ss_pred hhccCccchHHHHHHHHHhhhcCCCCCCCCCcccccccCCCCcchhhhhhchhhhcccccccccccCCCCCcchHHHHHH
Q 006691 205 AMTEESSLVCSVVRRLLLNYITRPRISVNSSSYSIFSEENQPGVLQRVGSAAATIVLLPFNYLVSSNGEGSSNPLTDCSL 284 (635)
Q Consensus 205 ~~~~~~~~~~~L~~SLL~n~i~~~~~p~~~~~y~~~~d~~~~g~~~~~gs~~~~~~~lpy~~l~~~~~~d~~~~L~~~sl 284 (635)
++...+++++.++|||+|+.++ | ||.|+| .|||++.++ |+..+|++.|+
T Consensus 226 ~s~ank~lvL~ll~SliNT~~~----------~----~p~~~~--------------~~yn~l~~s---ds~~sLve~~~ 274 (786)
T KOG2226|consen 226 FSSANKRLVLPLLTSLINTVCR----------Y----DPVGWK--------------NSYNQLLNS---DSLESLVEYCL 274 (786)
T ss_pred EEecCCceeehhhHHhhhhhee----------c----cccccc--------------ccccccccc---chhhhHHHHHH
Confidence 7767789999999999877765 4 666666 799999888 99999999999
Q ss_pred HHHHHHhhcCCCCCCCCCcccCCCCCCCcccccccCCCCCCChHHHHhhccc---ccccc---cccccCCCC-------C
Q 006691 285 LVLLVLIHYHKCVENDESITDRSDDSATSDSLAKSSTHFTVNPYCNALENAR---DIEFG---HMDLEGNAH-------S 351 (635)
Q Consensus 285 qlLlvLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~fr~~L~~~~---D~~f~---~~~~~~~~~-------~ 351 (635)
|+|||+++|..-+....+ .+...+. ....+|.|+.||+|+| ||+|+ ++|+++||. |
T Consensus 275 qiLli~lDh~~~e~t~~y---~~~r~s~--------g~~~kN~f~~ylSrlhr~~DF~fil~gi~RLL~nPl~s~s~yi~ 343 (786)
T KOG2226|consen 275 QILLILLDHRIKENTHLY---QNGRSSE--------GQHIKNYFINYLSRLHRTEDFLFILKGITRLLSNPLKSESQYIP 343 (786)
T ss_pred HHHHHhhccccccCceec---cCCcCCC--------ccchhhHHHHHHHHhccchhHHHHHHHHHHHhcchhhccccccc
Confidence 999999998664321111 1111111 1247899999999986 99998 678899984 4
Q ss_pred CCcccccchhHHHHhcccCCchhHHHHHHHHhhcCccchhhhhcccchhhhHHHHHHHHHhcccCCC--CchHHHHHHHH
Q 006691 352 GPVVRLPFASLFDTLGMYLADETAVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKTP--NQIYMLLIILL 429 (635)
Q Consensus 352 ~~~~~i~f~~l~~~~~~~~~~e~~~lLLy~ll~~N~~F~~~vl~~~~~~~lv~plL~~ly~~~~~~s--~~v~m~l~iLL 429 (635)
.+.+...|+ +| .+++||.+|+.|++|+.|+++..++.++++|||.+..+.+.|++ +++.||+|||+
T Consensus 344 ~s~k~~~~~-----------~E-~Liflw~~i~yNkrF~~~li~t~~a~d~li~iLy~~~~yr~D~~~~gl~~l~vfil~ 411 (786)
T KOG2226|consen 344 NSTKRKRCH-----------PE-LLIFLWLLITYNKRFTDYLIKTSDALDILIPILYHHVKYRGDTERSGLSHLCVFILL 411 (786)
T ss_pred ccchhhhhh-----------HH-HHHHHHHHHhccHHHHHHHhcCccHHHHHHHHHHHHHHhcCCccccchHHHHHHHHH
Confidence 566777776 55 99999999999999999999999999999999999999888875 67789999999
Q ss_pred HhcCCchhhhhhhccc---cC-CCcccccccccccCchhHHHHHHHHHHhhccccccccccchhH-HHHHhhhhhhhccC
Q 006691 430 ILSQDSSFNASIHKMI---LP-SVPWYKEHLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTC-LATLANMAPHVHRL 504 (635)
Q Consensus 430 ~LS~d~~F~~~l~~~~---l~-~ipw~~er~~~~~S~gdLlIlvl~r~I~~n~~~l~~~ylh~~c-La~LaN~sp~~~~L 504 (635)
.||+|++||+++|+.. .+ ++|.+ .|||+||+|++++++|++|..+++.++ +| |.+|+|++||+++|
T Consensus 412 ~Ls~Ek~f~~rLNk~~sl~~sl~vp~~------~gt~AdllIi~~~~li~~~~~~~s~l~---~~ll~ii~Ni~py~~nL 482 (786)
T KOG2226|consen 412 LLSGEKNFCKRLNKAYSLDKSLIVPVP------TGTYADLLIIVIHKLIAYGKDRLSELF---DCLLTIICNISPYIKNL 482 (786)
T ss_pred HHhhhHHHHHHhcccccccccCCCCCC------CCcccceeEeehhhhhhhcccccchHH---HHHHHHHHhhhhhhccc
Confidence 9999999999999965 22 57777 999999999999999999999999999 99 99999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhHhhh
Q 006691 505 SAYASQRLVSLFYMLSRKYNKIADRRDDKKGNLTEQDSFAEDMSAELHIYTDFLRIVLEILNAILTYALPRNPEVVYAIL 584 (635)
Q Consensus 505 s~~asqrLv~Lf~~ls~~~~~l~~~~~~~~~~~~e~~~~~~d~~~e~~~~~~~l~~lLEiiNsiL~~~~~~N~~LVYalL 584 (635)
+++||+|||+|++++|+++|.++++ .| | .++.+|||+||++||||+++|+||+|.|+
T Consensus 483 s~v~a~kl~eL~ss~S~P~FL~snp------------------~N--h---~ll~~LL~afnniiqy~F~~N~nLiY~ii 539 (786)
T KOG2226|consen 483 SMVAASKLVELISSFSTPWFLFSNP------------------QN--H---SLLKYLLEAFNNIIQYQFDGNSNLIYTII 539 (786)
T ss_pred chhhhHHHHHHHHHhcCchhhccCC------------------Cc--H---HHHHHHHHHHHHHHHHhhcCCcchhhHHH
Confidence 9999999999999999999977532 14 4 78999999999999999999999999999
Q ss_pred ccccccccCcCCcchH
Q 006691 585 HREEVFQPFKSHPRFN 600 (635)
Q Consensus 585 ~~r~~F~~l~~~~~f~ 600 (635)
|+|++|+++.+.+..+
T Consensus 540 r~k~vF~~l~als~da 555 (786)
T KOG2226|consen 540 RKKRVFEALSALSTDA 555 (786)
T ss_pred HHHHHHHHHhhcCchh
Confidence 9999999999887544
No 5
>PF08427 DUF1741: Domain of unknown function (DUF1741); InterPro: IPR013636 This is a eukaryotic domain of unknown function.
Probab=97.33 E-value=0.00089 Score=68.59 Aligned_cols=149 Identities=19% Similarity=0.322 Sum_probs=99.9
Q ss_pred chhHHHHHHHHHHhhccccccccccchhHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHH--HHHHHhhhccccCCCCCC
Q 006691 462 LGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVHRLSAYASQRLVSLFYMLSR--KYNKIADRRDDKKGNLTE 539 (635)
Q Consensus 462 ~gdLlIlvl~r~I~~n~~~l~~~ylh~~cLa~LaN~sp~~~~Ls~~asqrLv~Lf~~ls~--~~~~l~~~~~~~~~~~~e 539 (635)
++--+.=+++-.|.+|+.|.=|+-++.-|+.+|-.+=.|.+.=..--.=.=-.|+.+|-+ ||...- .
T Consensus 9 la~~iLD~~i~~i~~NL~k~l~v~lY~~~l~ii~Rll~y~~~~~~RL~Y~W~eLW~aLlsLl~Fl~~~--~--------- 77 (237)
T PF08427_consen 9 LATAILDLMIEFIRHNLRKRLDVDLYSLCLGIIHRLLCYLKRSRIRLEYHWSELWRALLSLLRFLTTY--E--------- 77 (237)
T ss_pred hHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHhc--h---------
Confidence 333444444556789999888888889999999998888864322111122234555544 444110 0
Q ss_pred CCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcC------CCCcchhHhhhccccccccCcC----Cc------------
Q 006691 540 QDSFAEDMSAELHIYTDFLRIVLEILNAILTYAL------PRNPEVVYAILHREEVFQPFKS----HP------------ 597 (635)
Q Consensus 540 ~~~~~~d~~~e~~~~~~~l~~lLEiiNsiL~~~~------~~N~~LVYalL~~r~~F~~l~~----~~------------ 597 (635)
.|..+.-++ ..++.-++.+||=+|.+.. ..=.+|.|.|+|..++|+.|+. +.
T Consensus 78 -----~~l~~~~~i-~~L~~~vv~l~n~~is~GDtFLPsp~~yDdL~YelVr~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 151 (237)
T PF08427_consen 78 -----SDLKDSPDI-FQLAEQVVNLFNFFISYGDTFLPSPASYDDLFYELVRSGQVFDKFRDMYLRSSTSSSSEYKDSSD 151 (237)
T ss_pred -----hhhhcccCh-HHHHHHHHHHHHHHHHhccccCCChHHHHhHHHHhHhchHHHHHHHHHHhhccCCCccccccchh
Confidence 011000122 2778889999999999854 2335799999999999998772 21
Q ss_pred chHHHHhhHHHHHHHhhhhHHH--------------HHHHHHhh
Q 006691 598 RFNELLENIYTVSRWFLCQNLY--------------ILSYIKYL 627 (635)
Q Consensus 598 ~f~~~~~ni~~v~~~f~~~~~~--------------~l~~i~~~ 627 (635)
.....+.||..|++||.++|.+ |+++||+|
T Consensus 152 ~~~~sl~nl~~I~~Hf~~ki~~~~~~~~~~~lt~~qV~~VIk~~ 195 (237)
T PF08427_consen 152 KLTNSLDNLRSIISHFESKIEEWSAANKKSNLTPEQVLEVIKQN 195 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHhC
Confidence 1237889999999999999993 99999986
No 6
>KOG4654 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.59 E-value=0.078 Score=51.96 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHhhcC------CCCcchhHhhhccccccccCcC-----------Ccc----hHHHHhhHHHHHHHhh
Q 006691 556 DFLRIVLEILNAILTYAL------PRNPEVVYAILHREEVFQPFKS-----------HPR----FNELLENIYTVSRWFL 614 (635)
Q Consensus 556 ~~l~~lLEiiNsiL~~~~------~~N~~LVYalL~~r~~F~~l~~-----------~~~----f~~~~~ni~~v~~~f~ 614 (635)
++..+++..+|-+|+|.. +.=.+|-|.|+|-++-|+.|.+ -|. .-..+.||..|++||+
T Consensus 99 ~La~lIldlf~mfIs~GDafl~~pde~ddLfYeii~mhknFdn~~S~vlrlstnagq~kdaaskv~~AL~ni~aiiehfn 178 (252)
T KOG4654|consen 99 RLAELILDLFAMFISNGDAFLIRPDELDDLFYEIIHMHKNFDNFSSKVLRLSTNAGQIKDAASKVLGALNNILAIIEHFN 178 (252)
T ss_pred HHHHHHHHHHHHHHhCCCeeeeCchHHHHHHHHHHHHhcchhhHHHHHHHhccccccCchHHHHHHHHHHHHHHHHHhcC
Confidence 788899999999999843 3455789999999999998653 232 2457899999999999
Q ss_pred hhHHH--------------HHHHHHhhhcccc
Q 006691 615 CQNLY--------------ILSYIKYLDLAYH 632 (635)
Q Consensus 615 ~~~~~--------------~l~~i~~~~~~~~ 632 (635)
++++. |++|||.+-=..|
T Consensus 179 pKiedyaavnhi~qlsadeV~eVikae~dsi~ 210 (252)
T KOG4654|consen 179 PKIEDYAAVNHIPQLSADEVEEVIKAELDSIP 210 (252)
T ss_pred chhhhHHHhcccccccHHHHHHHHHHhccccc
Confidence 99985 9999998654433
No 7
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=38.66 E-value=1.8e+02 Score=30.96 Aligned_cols=123 Identities=18% Similarity=0.215 Sum_probs=74.1
Q ss_pred HHHHHHHHhhcCccchhhhhcccchhhhHHHHHHHHHhcccCCC---CchHHHHHHHHHhcCCchhhhhhhccccCCCcc
Q 006691 375 AVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKTP---NQIYMLLIILLILSQDSSFNASIHKMILPSVPW 451 (635)
Q Consensus 375 ~~lLLy~ll~~N~~F~~~vl~~~~~~~lv~plL~~ly~~~~~~s---~~v~m~l~iLL~LS~d~~F~~~l~~~~l~~ipw 451 (635)
.++-...-+=.++.+|..+.+...+ ..+.++|. -.+..+++ +..|=+++++-.||=++.....+++..
T Consensus 169 ~av~~L~~LL~~~~~R~~f~~~~~v-~~l~~iL~--~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~------ 239 (312)
T PF03224_consen 169 IAVQCLQNLLRSKEYRQVFWKSNGV-SPLFDILR--KQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY------ 239 (312)
T ss_dssp HHHHHHHHHHTSHHHHHHHHTHHHH-HHHHHHHH-----------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS------
T ss_pred HHHHHHHHHhCcchhHHHHHhcCcH-HHHHHHHH--hhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc------
Confidence 4444444455899999999984222 23334443 11112222 334778999999999988888877532
Q ss_pred cccccccccCchhHHHHHHHHHHhhccccccccccchhHHHHHhhhhhhhc--cCCHHHHHHHHHHHHHHHHHHH
Q 006691 452 YKEHLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVH--RLSAYASQRLVSLFYMLSRKYN 524 (635)
Q Consensus 452 ~~er~~~~~S~gdLlIlvl~r~I~~n~~~l~~~ylh~~cLa~LaN~sp~~~--~Ls~~asqrLv~Lf~~ls~~~~ 524 (635)
+|..++.++.... |-+-+ +-|++++-|+...-. ....-.-.++..+++.|+.|-+
T Consensus 240 --------------~i~~L~~i~~~~~-KEKvv---Rv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~ 296 (312)
T PF03224_consen 240 --------------LIPLLADILKDSI-KEKVV---RVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKW 296 (312)
T ss_dssp --------------HHHHHHHHHHH---SHHHH---HHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--
T ss_pred --------------hHHHHHHHHHhcc-cchHH---HHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCC
Confidence 4555566555433 32322 267999999998887 5555566778888888888544
No 8
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.95 E-value=1.4e+02 Score=35.74 Aligned_cols=143 Identities=19% Similarity=0.312 Sum_probs=84.3
Q ss_pred HHHHHHHHhhcCccchhhhhcccchhhhHHHHHHHHHhcccCCCCchHHHHHHHHHhcCCchhhhhhhccccCCCccccc
Q 006691 375 AVLLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKTPNQIYMLLIILLILSQDSSFNASIHKMILPSVPWYKE 454 (635)
Q Consensus 375 ~~lLLy~ll~~N~~F~~~vl~~~~~~~lv~plL~~ly~~~~~~s~~v~m~l~iLL~LS~d~~F~~~l~~~~l~~ipw~~e 454 (635)
.+=|||.+|+ ++++..+|--+|++|-.++..- +--|.+ =.-| +-+.+.+|..||
T Consensus 389 avDLLY~mcD-----------~~Nak~IV~elLqYL~tAd~si--reeivl-KvAI----------LaEKyAtDy~Wy-- 442 (938)
T KOG1077|consen 389 AVDLLYAMCD-----------VSNAKQIVAELLQYLETADYSI--REEIVL-KVAI----------LAEKYATDYSWY-- 442 (938)
T ss_pred HHHHHHHHhc-----------hhhHHHHHHHHHHHHhhcchHH--HHHHHH-HHHH----------HHHHhcCCcchh--
Confidence 4456776654 5678888888999987764322 111221 1112 345678899999
Q ss_pred ccccccCchhHHHHHHHHHHhhccccccccccchhHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 006691 455 HLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPHVHRLSAYASQRLVSLFYMLSRKYNKIADRRDDKK 534 (635)
Q Consensus 455 r~~~~~S~gdLlIlvl~r~I~~n~~~l~~~ylh~~cLa~LaN~sp~~~~Ls~~asqrLv~Lf~~ls~~~~~l~~~~~~~~ 534 (635)
|-|+..+|.-.-.-..|.--|.-|-.+..| +.++.|||.|+... |-++-.
T Consensus 443 ------------VdviLqLiriagd~vsdeVW~RvvQiVvNn-----edlq~yaak~~fe~---Lq~~a~---------- 492 (938)
T KOG1077|consen 443 ------------VDVILQLIRIAGDYVSDEVWYRVVQIVVNN-----EDLQGYAAKRLFEY---LQKPAC---------- 492 (938)
T ss_pred ------------HHHHHHHHHHhcccccHHHHHHhheeEecc-----hhhhHHHHHHHHHH---HhhhHH----------
Confidence 344444444322222233223334333344 67999999987544 444221
Q ss_pred CCCCCCCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhHhhhccccc
Q 006691 535 GNLTEQDSFAEDMSAELHIYTDFLRIVLEILNAILTYALPRNPEVVYAILHREEV 589 (635)
Q Consensus 535 ~~~~e~~~~~~d~~~e~~~~~~~l~~lLEiiNsiL~~~~~~N~~LVYalL~~r~~ 589 (635)
.| + ...+-.++|-=+.+.|+.+.+.-|--.++++|.+=-
T Consensus 493 --------------hE-~-mVKvggyiLGEfg~LIa~~prss~~~qFsllh~K~~ 531 (938)
T KOG1077|consen 493 --------------HE-N-MVKVGGYILGEFGNLIADDPRSSPAVQFSLLHEKLH 531 (938)
T ss_pred --------------HH-H-HHHhhhhhhhhhhhhhcCCCCCChHHHHHHHHHHhc
Confidence 11 1 114456778888889999888888888999887643
No 9
>COG4321 Uncharacterized protein related to arylsulfate sulfotransferase involved in siderophore biosynthesis [General function prediction only]
Probab=25.89 E-value=75 Score=28.50 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=35.6
Q ss_pred ccCCCCchhHHHhhcCCCCCCCCccchHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHh
Q 006691 30 KSFPLASDFWQKLLELPLSLHWPSHRVHQACEAFAQNNCYTRHLAKILIHLTWCLQECIS 89 (635)
Q Consensus 30 ~~I~~~D~FW~qfws~p~s~~~p~e~l~~~~~~l~~nN~~t~Nl~tLi~~l~~rl~~l~~ 89 (635)
.++...++||+.+-+.-..-+. .+-.+...+-+.-++.+||.+.+++.+-|=-....
T Consensus 27 TS~rLE~~FW~~L~eIA~~r~l---t~a~LIaei~d~r~~~~NlsSaLRV~clr~L~~~~ 83 (102)
T COG4321 27 TSVRLENPFWDILKEIAERRKL---TVAALIAEIDDERGRDGNLSSALRVCCLRWLKLRL 83 (102)
T ss_pred eeEeehhHHHHHHHHHHHhcCC---cHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHhc
Confidence 3477889999998876211010 23333445544455679999999998776544443
No 10
>COG5111 RPC34 DNA-directed RNA polymerase III, subunit C34 [Transcription]
Probab=18.03 E-value=6.5e+02 Score=26.17 Aligned_cols=46 Identities=28% Similarity=0.590 Sum_probs=33.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhcCCCC------cchhHhhhccccccccCcCCcchHHHHh
Q 006691 549 AELHIYTDFLRIVLEILNAILTYALPRN------PEVVYAILHREEVFQPFKSHPRFNELLE 604 (635)
Q Consensus 549 ~e~~~~~~~l~~lLEiiNsiL~~~~~~N------~~LVYalL~~r~~F~~l~~~~~f~~~~~ 604 (635)
+|+. .+++..+||||---+..+.-.| |+++|+ ..+...|+.+++++
T Consensus 165 ~elD--vEfi~~ll~ii~rf~~~n~fp~kn~~~gpnv~~~--------P~y~~ypT~~~I~n 216 (301)
T COG5111 165 NELD--VEFIARLLEIIERFLEKNLFPRKNFEEGPNVFYA--------PKYEDYPTLEDIMN 216 (301)
T ss_pred Cccc--HHHHHHHHHHHHHHHHhccCCccchhcCCccccC--------CccCCCccHHHHHH
Confidence 5554 3899999999999888644443 777776 34677888888874
Done!