Query 006691
Match_columns 635
No_of_seqs 169 out of 236
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 06:23:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006691.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006691hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kk4_A Uncharacterized protein 9.7 1.4E+02 0.0047 26.7 2.2 82 31-115 31-118 (125)
2 1rw2_A ATP-dependent DNA helic 7.8 9.3E+02 0.032 21.8 7.1 52 71-124 49-100 (152)
3 3c18_A Nucleotidyltransferase- 6.3 1.9E+02 0.0065 29.5 1.7 63 554-616 201-266 (290)
4 1zoq_C CREB-binding protein, i 6.2 91 0.0031 22.9 -0.5 15 574-588 27-41 (47)
5 1q2z_A ATP-dependent DNA helic 6.0 5.8E+02 0.02 22.1 4.6 52 71-124 18-69 (120)
6 1kbh_B CREB-binding protein, n 5.6 1.2E+02 0.0041 23.3 -0.2 16 574-589 34-49 (59)
7 4gt9_A TS, tsase, thymidylate 5.0 5.3E+02 0.018 25.0 4.0 53 61-118 159-216 (232)
8 2koe_A Human cannabinoid recep 4.6 3E+02 0.01 18.2 1.4 22 558-586 5-26 (40)
9 1r8s_E ARNO; protein transport 4.5 7.5E+02 0.026 23.5 4.6 89 508-634 107-199 (203)
10 3mn5_S Protein spire, actin, a 3.8 3.7E+02 0.013 18.6 1.2 11 618-628 18-28 (38)
No 1
>3kk4_A Uncharacterized protein BP1543; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: CME; 1.95A {Bordetella pertussis tohama I}
Probab=9.74 E-value=1.4e+02 Score=26.75 Aligned_cols=82 Identities=20% Similarity=0.149 Sum_probs=44.0
Q ss_pred cCCCCchhHHHhhcCCCCCCCCccchHHHHHHH----HHhcCCCccHHHHHHHHHHHHHHHHhcCCCCchH--HHHHHHH
Q 006691 31 SFPLASDFWQKLLELPLSLHWPSHRVHQACEAF----AQNNCYTRHLAKILIHLTWCLQECISSSGTASVA--IMKAINA 104 (635)
Q Consensus 31 ~I~~~D~FW~qfws~p~s~~~p~e~l~~~~~~l----~~nN~~t~Nl~tLi~~l~~rl~~l~~~~~~~~~~--~~qalNc 104 (635)
+|...+.||+-|=+.- ...- =++-.++..+ .+.....+||++.||+++-+=.++.....-+... .--.+|+
T Consensus 31 SIrLE~~FW~~L~eIA--~~~g-~tv~~Lia~I~~E~~d~~~~~~NlaSalRV~~L~yl~~~a~g~~p~~~~~~i~~l~a 107 (125)
T 3kk4_A 31 SVRLEQLFWDVLEEIA--ARDG-MRVTQLIERLYDELVQYRGEAANFTSFLRVCCLRYQVLQAEGRIPADATVPIRSLDA 107 (125)
T ss_dssp EEEEEHHHHHHHHHHH--HHTT-CCHHHHHHHHHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHTTSSCSCTTSCGGGSCH
T ss_pred eeehhHHHHHHHHHHH--HHcC-CCHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCCCCccccccccccCH
Confidence 3667789999987651 0000 0233344333 2333346899999999887766665554322211 1113555
Q ss_pred HHHHHHhhhhh
Q 006691 105 VYISSVFLKYL 115 (635)
Q Consensus 105 lriLtriLpyl 115 (635)
=.||...-+..
T Consensus 108 ~~~l~~~~~~~ 118 (125)
T 3kk4_A 108 QAVLRGLPANL 118 (125)
T ss_dssp HHHHTTCCGGG
T ss_pred HHHHhcCcccc
Confidence 55555444433
No 2
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=7.79 E-value=9.3e+02 Score=21.79 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=39.0
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhhhheecCChhhH
Q 006691 71 RHLAKILIHLTWCLQECISSSGTASVAIMKAINAVYISSVFLKYLIENAESENF 124 (635)
Q Consensus 71 ~Nl~tLi~~l~~rl~~l~~~~~~~~~~~~qalNclriLtriLpyl~E~~~~~~~ 124 (635)
..+...+.-...++.+++.++ ....+.+|+-||+.+|.-+-..-|...+-+|
T Consensus 49 ~~~~~A~~qM~~vI~~Ll~~s--~~~~y~KA~ecL~~lR~~~i~~~ep~~yN~F 100 (152)
T 1rw2_A 49 ASFEEASNQLINHIEQFLDTN--ETPYFMKSIDCIRAFREEAIKFSEEQRFNNF 100 (152)
T ss_dssp SCHHHHHHHHHHHHHHHHHSS--CSHHHHHHHHHHHHHHHHHHHHTCSHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 458888888888888888865 4456789999999999888766555444444
No 3
>3c18_A Nucleotidyltransferase-like protein; ZP_00538802.1, structur genomics, joint center for structural genomics, JCSG; 1.90A {Exiguobacterium sibiricum}
Probab=6.31 E-value=1.9e+02 Score=29.48 Aligned_cols=63 Identities=11% Similarity=0.291 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcchhHhhhcccc---ccccCcCCcchHHHHhhHHHHHHHhhhh
Q 006691 554 YTDFLRIVLEILNAILTYALPRNPEVVYAILHREE---VFQPFKSHPRFNELLENIYTVSRWFLCQ 616 (635)
Q Consensus 554 ~~~~l~~lLEiiNsiL~~~~~~N~~LVYalL~~r~---~F~~l~~~~~f~~~~~ni~~v~~~f~~~ 616 (635)
++.-+..++.++.-.+....+.-....-.+|+.|+ .++.+.+||.|+++=-++..+++|.-.|
T Consensus 201 lekrielllla~Ef~I~sk~~~~~~~Ll~~m~ek~~~wS~~Ei~~~p~~~~~~idle~iL~~Lv~k 266 (290)
T 3c18_A 201 LEQRIHLALIGLEHLLQSKVLSGGKYLFEVMRERDRPWTMHELMEESRLTELKVDLGSLVDFFIRK 266 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTSSSCEEHHHHHHCGGGGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHhcCcccccccCCHHHHHHHHHHc
Confidence 34667888888888888888888889999999999 5567889999999999999999986544
No 4
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=6.20 E-value=91 Score=22.90 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=13.6
Q ss_pred CCCcchhHhhhcccc
Q 006691 574 PRNPEVVYAILHREE 588 (635)
Q Consensus 574 ~~N~~LVYalL~~r~ 588 (635)
+.||.|.-|++++|.
T Consensus 27 ksnPqLMAAfIkQR~ 41 (47)
T 1zoq_C 27 KSNPQLMAAFIKQRT 41 (47)
T ss_dssp HTCHHHHHHHHHHTT
T ss_pred HcCHHHHHHHHHHHH
Confidence 689999999999985
No 5
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=6.01 E-value=5.8e+02 Score=22.08 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=37.5
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhhhheecCChhhH
Q 006691 71 RHLAKILIHLTWCLQECISSSGTASVAIMKAINAVYISSVFLKYLIENAESENF 124 (635)
Q Consensus 71 ~Nl~tLi~~l~~rl~~l~~~~~~~~~~~~qalNclriLtriLpyl~E~~~~~~~ 124 (635)
.++...+.-...++.+++.++ ....+.+|+-|++.+|.-+-..-|...+-+|
T Consensus 18 ~~~~~A~~qm~~vI~~Ll~~s--~~~~y~ka~ecl~~~R~~~i~~~ep~~yN~F 69 (120)
T 1q2z_A 18 ASFEEASNQLINHIEQFLDTN--ETPYFMKSIDCIRAFREEAIKFSEEQRFNNF 69 (120)
T ss_dssp CTTTHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhCc--ccchHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 467777777777788887765 4455789999999999888766555433333
No 6
>1kbh_B CREB-binding protein, nuclear receptor coactivator; nuclear hormone receptors, ACTR, CBP, transcription; NMR {Mus musculus} SCOP: a.153.1.1 PDB: 2c52_A 2kkj_A 2l14_A
Probab=5.63 E-value=1.2e+02 Score=23.32 Aligned_cols=16 Identities=19% Similarity=0.463 Sum_probs=14.1
Q ss_pred CCCcchhHhhhccccc
Q 006691 574 PRNPEVVYAILHREEV 589 (635)
Q Consensus 574 ~~N~~LVYalL~~r~~ 589 (635)
+.||.|.-|++++|..
T Consensus 34 ksNPqLMAAfIKQR~~ 49 (59)
T 1kbh_B 34 KSNPQLMAAFIKQRTA 49 (59)
T ss_dssp TTSHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 7899999999998853
No 7
>4gt9_A TS, tsase, thymidylate synthase THYX; flavin-dependent thymidylate synthase, TM0449, FAD, DUMP, 5, methylenetetrahydrofolate, transferase; HET: FAD UMP MEF; 1.39A {Thermotoga maritima} PDB: 1kq4_A 1o25_A* 1o24_A* 1o27_A* 1o28_A* 1o29_A* 1o2a_A* 1o2b_A* 1o26_A* 4gta_A* 4gtb_A* 4gtl_A* 3g4a_A* 3g4c_A* 4gtd_A* 4gtc_A* 4gte_A* 4gtf_A* 3n0b_A* 3n0c_A*
Probab=4.96 E-value=5.3e+02 Score=24.95 Aligned_cols=53 Identities=15% Similarity=0.027 Sum_probs=34.0
Q ss_pred HHHHHhcCCC-----ccHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhhhheec
Q 006691 61 EAFAQNNCYT-----RHLAKILIHLTWCLQECISSSGTASVAIMKAINAVYISSVFLKYLIEN 118 (635)
Q Consensus 61 ~~l~~nN~~t-----~Nl~tLi~~l~~rl~~l~~~~~~~~~~~~qalNclriLtriLpyl~E~ 118 (635)
+.+.+++..| +|+..|..++- ++.++........=|.-+.+++..+.|.++|+
T Consensus 159 R~vLP~a~~T~~~~T~NlRsl~hfi~-----LR~~~~AQ~EIR~lA~~m~~~l~~~~P~~~~a 216 (232)
T 4gt9_A 159 RIVLPLNLYTRFFWTVNARSLMNFLN-----LRADSHAQWEIQQYALAIARIFKEKCPWTFEA 216 (232)
T ss_dssp GGGSCTTBEEEEEEEEEHHHHHHHHH-----HHSSTTSCHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HhhcccceEEEEEEEEeHHHHHHHHH-----HhCCCCCCHHHHHHHHHHHHHHHHHChHHHHH
Confidence 4444555433 99999887754 33333322222333577889999999999887
No 8
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=4.63 E-value=3e+02 Score=18.22 Aligned_cols=22 Identities=32% Similarity=0.697 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhcCCCCcchhHhhhcc
Q 006691 558 LRIVLEILNAILTYALPRNPEVVYAILHR 586 (635)
Q Consensus 558 l~~lLEiiNsiL~~~~~~N~~LVYalL~~ 586 (635)
+..++-.+|+++ || +||++..+
T Consensus 5 ~~~~l~~~ns~l------NP-iIY~~~~~ 26 (40)
T 2koe_A 5 FASMLCLLNSTV------NP-IIYALRSK 26 (40)
T ss_dssp HHHHHHHHHHHS------ST-TTTBTTBH
T ss_pred HHHHHHHHHHHH------HH-HHHHHccH
Confidence 445677788887 66 88887643
No 9
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=4.47 E-value=7.5e+02 Score=23.54 Aligned_cols=89 Identities=13% Similarity=0.171 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCch-hhhhhhhhhhHHHHHHHHHHHHHHHHhhcCCCCcchhHhhhcc
Q 006691 508 ASQRLVSLFYMLSRKYNKIADRRDDKKGNLTEQDSF-AEDMSAELHIYTDFLRIVLEILNAILTYALPRNPEVVYAILHR 586 (635)
Q Consensus 508 asqrLv~Lf~~ls~~~~~l~~~~~~~~~~~~e~~~~-~~d~~~e~~~~~~~l~~lLEiiNsiL~~~~~~N~~LVYalL~~ 586 (635)
-||++=++++.||+||..- + |... +.| .+ .+|.+-+=.+|.= -|||+.
T Consensus 107 EaQ~IdRile~Fa~ry~~~-----N-------p~~f~s~D-----~~--~vLaySiImLNTD-----lHn~~v------- 155 (203)
T 1r8s_E 107 KAQKIDRMMEAFAQRYCLC-----N-------PGVFQSTD-----TC--YVLSYSVIMLNTD-----LHNPNV------- 155 (203)
T ss_dssp SHHHHHHHHHHHHHHHHHH-----S-------TTSSSCHH-----HH--HHHHHHHHHHHHH-----HHCTTC-------
T ss_pred chHHHHHHHHHHHHHHHHh-----C-------CcccCCcc-----hH--HHHHHHHHHhccc-----ccCccc-------
Confidence 4799999999999999842 1 1101 111 11 1222222223332 344542
Q ss_pred ccccccCcCCcchHHHHhhHHHHHH--Hhh-hhHHHHHHHHHhhhcccccC
Q 006691 587 EEVFQPFKSHPRFNELLENIYTVSR--WFL-CQNLYILSYIKYLDLAYHKD 634 (635)
Q Consensus 587 r~~F~~l~~~~~f~~~~~ni~~v~~--~f~-~~~~~~l~~i~~~~~~~~~~ 634 (635)
++.-+.++.+.|...+-+ =|. .-|..+-..|+...+.||.|
T Consensus 156 -------k~kMt~~~Fi~n~rgin~g~d~p~e~L~~iYd~I~~~ei~~~~d 199 (203)
T 1r8s_E 156 -------RDKMGLERFVAMNRGINEGGDLPEELLRNLYDSIRNEPFKIPED 199 (203)
T ss_dssp -------CSCCCHHHHHHHTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCCC
T ss_pred -------ccccCHHHHHHHhhcccCCCCCCHHHHHHHHHHHHhCCCCCccC
Confidence 345577888888755421 133 33445889999999999987
No 10
>3mn5_S Protein spire, actin, alpha skeletal muscle; WH2 domain, actin complex, contractIle protein-protei complex; HET: ATP LAB; 1.50A {Drosophila melanogaster}
Probab=3.83 E-value=3.7e+02 Score=18.60 Aligned_cols=11 Identities=9% Similarity=0.005 Sum_probs=7.9
Q ss_pred HHHHHHHHhhh
Q 006691 618 LYILSYIKYLD 628 (635)
Q Consensus 618 ~~~l~~i~~~~ 628 (635)
+|.+++||+|.
T Consensus 18 eql~esir~g~ 28 (38)
T 3mn5_S 18 EQLMESIRKGK 28 (38)
T ss_pred HHHHHHHHccc
Confidence 45778888774
Done!