Query 006691
Match_columns 635
No_of_seqs 169 out of 236
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 06:23:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006691.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006691hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x3zb1 a.189.1.1 (B:253-309) 29.1 11 0.00077 26.6 1.5 34 511-564 23-56 (57)
2 d1rsoa_ a.194.1.1 (A:) Presyna 20.9 34 0.0025 24.9 3.1 26 596-621 21-46 (60)
3 d1fpwa_ a.39.1.5 (A:) Frequeni 13.1 1.6E+02 0.012 24.6 6.5 106 1-133 1-110 (190)
4 d2pf1a2 g.32.1.1 (A:36-65) Pro 10.4 57 0.0041 20.0 1.5 22 34-56 2-23 (30)
5 d1bu2a2 a.74.1.1 (A:149-250) V 8.2 41 0.003 25.8 0.2 35 24-69 9-43 (102)
6 d1ho8a_ a.118.1.9 (A:) Regulat 7.4 9.1E+02 0.067 23.5 11.0 100 377-500 186-299 (477)
7 d2jaka1 a.118.1.20 (A:30-372) 7.4 2.7E+02 0.02 26.4 6.2 76 557-634 191-267 (343)
8 d1x58a1 a.4.1.1 (A:8-56) Hypot 7.1 1.7E+02 0.012 19.8 3.0 20 38-60 22-42 (49)
9 d2gmha2 d.16.1.8 (A:237-335) E 5.9 49 0.0036 26.3 -0.4 17 588-604 69-85 (99)
10 d1zoqc1 a.153.1.1 (C:2065-2111 5.2 54 0.0039 22.1 -0.5 15 574-588 27-41 (47)
No 1
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.13 E-value=11 Score=26.62 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCCCCchhhhhhhhhhhHHHHHHHHHHH
Q 006691 511 RLVSLFYMLSRKYNKIADRRDDKKGNLTEQDSFAEDMSAELHIYTDFLRIVLEI 564 (635)
Q Consensus 511 rLv~Lf~~ls~~~~~l~~~~~~~~~~~~e~~~~~~d~~~e~~~~~~~l~~lLEi 564 (635)
.|.-||+.+|.||-.+.+++-. | -+.++.++||+
T Consensus 23 al~plle~ls~ryp~lre~im~----------------n----pe~fismllea 56 (57)
T d1x3zb1 23 ALAPLLENISARYPQLREHIMA----------------N----PEVFVSMLLEA 56 (57)
T ss_dssp GHHHHHHHHHTTCHHHHHHHHT----------------C----HHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHh----------------C----HHHHHHHHHhh
Confidence 4677899999988877654311 1 34889999986
No 2
>d1rsoa_ a.194.1.1 (A:) Presynaptic protein sap97 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.92 E-value=34 Score=24.92 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=23.4
Q ss_pred CcchHHHHhhHHHHHHHhhhhHHHHH
Q 006691 596 HPRFNELLENIYTVSRWFLCQNLYIL 621 (635)
Q Consensus 596 ~~~f~~~~~ni~~v~~~f~~~~~~~l 621 (635)
.|..+.+-..|++||+-|.++|-+.|
T Consensus 21 ~~~D~~lr~~iervI~iFkS~LF~aL 46 (60)
T d1rsoa_ 21 QTEDRQLRSSIERVISIFQSNLFQAL 46 (60)
T ss_dssp SSSCHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999999999844
No 3
>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.06 E-value=1.6e+02 Score=24.57 Aligned_cols=106 Identities=11% Similarity=0.025 Sum_probs=54.9
Q ss_pred CCCCCCcccccCCCCcchhHHHHHHhhCCccCCCCc-h-hHHHhhcCCCCCCCCccchHHHHHHHHHhc--CCCccHHHH
Q 006691 1 MGGVPSTPRFADSRPQDTAEYLIATFVGEKSFPLAS-D-FWQKLLELPLSLHWPSHRVHQACEAFAQNN--CYTRHLAKI 76 (635)
Q Consensus 1 MG~~~Sk~~~~~~~~~~~~~~l~~~L~~~~~I~~~D-~-FW~qfws~p~s~~~p~e~l~~~~~~l~~nN--~~t~Nl~tL 76 (635)
||++.||+. ++-+ .+|......+..+ . .+.+|-... .+..=......+.+..-. ..+..
T Consensus 1 MG~~~S~l~---------~e~l-~~l~~~t~fs~~Ei~~l~~~F~~~~---~~G~i~~~ef~~~~~~~~~~~~~~~---- 63 (190)
T d1fpwa_ 1 MGAKTSKLS---------KDDL-TCLKQSTYFDRREIQQWHKGFLRDC---PSGQLAREDFVKIYKQFFPFGSPED---- 63 (190)
T ss_dssp CCCCSCCST---------THHH-HHHTTTCCSTHHHHHHHHHHHHHHC---TTCCEEHHHHHHHHHHHCTTSCCSH----
T ss_pred CCCccCCCC---------HHHH-HHHHHHcCCCHHHHHHHHHHHHHHC---CCCCccHHHHHHHHHHHCCCCChHH----
Confidence 999999976 3445 8888888888877 4 446665541 111112222223332211 11222
Q ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhhhheecCChhhHHHhhcccCC
Q 006691 77 LIHLTWCLQECISSSGTASVAIMKAINAVYISSVFLKYLIENAESENFEELHLSLDE 133 (635)
Q Consensus 77 i~~l~~rl~~l~~~~~~~~~~~~qalNclriLtriLpyl~E~~~~~~~~~~fw~~~~ 133 (635)
++.|+++.....++......+-+-++..+.+ ...++.++.+|..+|.
T Consensus 64 ---~~~~if~~~D~~~~G~I~~~Ef~~~~~~~~~-------~~~~e~~~~~F~~~D~ 110 (190)
T d1fpwa_ 64 ---FANHLFTVFDKDNNGFIHFEEFITVLSTTSR-------GTLEEKLSWAFELYDL 110 (190)
T ss_dssp ---HHHHHHHTCCSSCSSEECHHHHHHHHHHHSC-------CCSTHHHHHHHHHHCS
T ss_pred ---HHHHHHHHhCcCCCCcccHHHHHHHHHHHcc-------CchHHHHHHHHHHhcc
Confidence 3456777665555554445565555544321 2223345556666664
No 4
>d2pf1a2 g.32.1.1 (A:36-65) Prothrombin {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.37 E-value=57 Score=19.98 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=15.2
Q ss_pred CCchhHHHhhcCCCCCCCCccch
Q 006691 34 LASDFWQKLLELPLSLHWPSHRV 56 (635)
Q Consensus 34 ~~D~FW~qfws~p~s~~~p~e~l 56 (635)
+.|.||.++-.-. +...|.|.+
T Consensus 2 atd~fwakytace-s~r~prekl 23 (30)
T d2pf1a2 2 ATDAFWAKYTACE-SARNPREKL 23 (30)
T ss_dssp CSHHHHHHHHHTS-TTCSSHHHH
T ss_pred chhHHHHHHHHHH-HhcCcHHHH
Confidence 5789999987652 566666633
No 5
>d1bu2a2 a.74.1.1 (A:149-250) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]}
Probab=8.16 E-value=41 Score=25.78 Aligned_cols=35 Identities=26% Similarity=0.477 Sum_probs=25.2
Q ss_pred HHhhCCccCCCCchhHHHhhcCCCCCCCCccchHHHHHHHHHhcCC
Q 006691 24 ATFVGEKSFPLASDFWQKLLELPLSLHWPSHRVHQACEAFAQNNCY 69 (635)
Q Consensus 24 ~~L~~~~~I~~~D~FW~qfws~p~s~~~p~e~l~~~~~~l~~nN~~ 69 (635)
--++..-.||+ +||-|+++. +...+|+++++-|+.
T Consensus 9 ip~c~alkipe--~~wpql~e~---------~s~tickaliqpnia 43 (102)
T d1bu2a2 9 IPLCNALKIPE--DLWPQLYEA---------ASTTICKALIQPNIA 43 (102)
T ss_dssp HHHHHHTTCCT--TSHHHHHHH---------HHHHHHHHTTSTTGG
T ss_pred HHhhhhccCcH--HHhHHHHHH---------HHHHHHHHHcCCCcc
Confidence 34455555665 599999998 367889999886653
No 6
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.42 E-value=9.1e+02 Score=23.51 Aligned_cols=100 Identities=13% Similarity=0.251 Sum_probs=58.8
Q ss_pred HHHHHHhhcCccchhhhhcccchhhhHHHHHHHHHhcccCC---------C-----CchHHHHHHHHHhcCCchhhhhhh
Q 006691 377 LLLYSLVQGNSGFLEYVLVRTDLDTLLMPILETLYNASKKT---------P-----NQIYMLLIILLILSQDSSFNASIH 442 (635)
Q Consensus 377 lLLy~ll~~N~~F~~~vl~~~~~~~lv~plL~~ly~~~~~~---------s-----~~v~m~l~iLL~LS~d~~F~~~l~ 442 (635)
+-.+..+=..+.||.-+.... ...+.|++.++-.+-... + +..|=+++++-.||=+..++..+.
T Consensus 186 v~~lq~llr~~~~R~~fw~~~--~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~ 263 (477)
T d1ho8a_ 186 IRLLQELAVIPEYRDVIWLHE--KKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELV 263 (477)
T ss_dssp HHHHHHHHTSHHHHHHHHTTH--HHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHcc--cchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 334455557788888765431 235567777776653321 1 335778999999998888888776
Q ss_pred ccccCCCcccccccccccCchhHHHHHHHHHHhhccccccccccchhHHHHHhhhhhh
Q 006691 443 KMILPSVPWYKEHLLHQTSLGSLLVIILIRTVKYNLSKLRDVYLHTTCLATLANMAPH 500 (635)
Q Consensus 443 ~~~l~~ipw~~er~~~~~S~gdLlIlvl~r~I~~n~~~l~~~ylh~~cLa~LaN~sp~ 500 (635)
+.+.. +|..+++++.. ..|-+-+ +-|++++-|+...
T Consensus 264 ~~~~~------------------~i~~l~~i~~~-s~KEKvv---Rv~l~~l~Nll~~ 299 (477)
T d1ho8a_ 264 QKYLS------------------DFLDLLKLVKI-TIKEKVS---RLCISIILQCCST 299 (477)
T ss_dssp TTSHH------------------HHHHHHHHHHH-CCSHHHH---HHHHHHHHHTTSS
T ss_pred HhhhH------------------HHHHHHHHHHh-hhHHHHH---HHHHHHHHHHhhh
Confidence 65422 13344454443 2222222 2568999998753
No 7
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.41 E-value=2.7e+02 Score=26.40 Aligned_cols=76 Identities=17% Similarity=0.068 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCcchhHhhhccccccccCcCCcchHHHHhhHHHHHHHhhhhHHH-HHHHHHhhhcccccC
Q 006691 557 FLRIVLEILNAILTYALPRNPEVVYAILHREEVFQPFKSHPRFNELLENIYTVSRWFLCQNLY-ILSYIKYLDLAYHKD 634 (635)
Q Consensus 557 ~l~~lLEiiNsiL~~~~~~N~~LVYalL~~r~~F~~l~~~~~f~~~~~ni~~v~~~f~~~~~~-~l~~i~~~~~~~~~~ 634 (635)
.+.-+||++.+++.+--.--.+--..++ ++++-+|...+.+...-+.+..++..|=++-.+ .-.+||...=+||+.
T Consensus 191 gI~elLeil~sii~gf~~plkeeh~~f~--~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~~i~~llk~WP~t 267 (343)
T d2jaka1 191 GIAELLEILGSIINGFALPLKEEHKIFL--LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKT 267 (343)
T ss_dssp CHHHHHHHHHHHHHTCCSSCCHHHHHHH--HHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSS
T ss_pred cHHHHHHHHHHHHHhccCCchHHHHHHH--HHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCC
Confidence 3556788888888763222222222222 245566777776666666666666666555554 777888888899985
No 8
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.13 E-value=1.7e+02 Score=19.78 Aligned_cols=20 Identities=15% Similarity=0.415 Sum_probs=12.6
Q ss_pred hHHH-hhcCCCCCCCCccchHHHH
Q 006691 38 FWQK-LLELPLSLHWPSHRVHQAC 60 (635)
Q Consensus 38 FW~q-fws~p~s~~~p~e~l~~~~ 60 (635)
-||. +|++| |+.-.. ..++.
T Consensus 22 ~WNsILWs~P--F~~GR~-~vdLA 42 (49)
T d1x58a1 22 HWNSILWSFP--FQKGRR-AVDLA 42 (49)
T ss_dssp CHHHHHHHSC--CCTTCC-HHHHH
T ss_pred hhhhhhhccC--CCCCch-hhHHH
Confidence 3988 89998 664433 44443
No 9
>d2gmha2 d.16.1.8 (A:237-335) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}
Probab=5.94 E-value=49 Score=26.30 Aligned_cols=17 Identities=41% Similarity=0.684 Sum_probs=10.9
Q ss_pred cccccCcCCcchHHHHh
Q 006691 588 EVFQPFKSHPRFNELLE 604 (635)
Q Consensus 588 ~~F~~l~~~~~f~~~~~ 604 (635)
+.|+.|++||.++.++.
T Consensus 69 ~~lq~fK~HP~I~~ll~ 85 (99)
T d2gmha2 69 REFQRWKHHPSIKPTLE 85 (99)
T ss_dssp HHHHHHTTSTTTHHHHT
T ss_pred HHHHHHhcCHHHHHHhc
Confidence 44566777777766664
No 10
>d1zoqc1 a.153.1.1 (C:2065-2111) Nuclear receptor coactivator CBP/p300 ibid domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.17 E-value=54 Score=22.10 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=13.4
Q ss_pred CCCcchhHhhhcccc
Q 006691 574 PRNPEVVYAILHREE 588 (635)
Q Consensus 574 ~~N~~LVYalL~~r~ 588 (635)
+.||.|.-+++++|.
T Consensus 27 ksNP~lmaaFIkQRa 41 (47)
T d1zoqc1 27 KSNPQLMAAFIKQRT 41 (47)
T ss_dssp HTCHHHHHHHHHHTT
T ss_pred HcCHHHHHHHHHHHH
Confidence 589999999999984
Done!