Query 006692
Match_columns 635
No_of_seqs 139 out of 269
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 06:24:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006692.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006692hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qip_A Protein of unknown func 99.7 7.6E-17 2.6E-21 149.1 8.0 143 28-174 10-163 (165)
2 3sho_A Transcriptional regulat 61.9 33 0.0011 30.7 8.6 96 65-170 40-138 (187)
3 2xhz_A KDSD, YRBH, arabinose 5 57.0 47 0.0016 29.6 8.7 96 65-171 50-148 (183)
4 1jeo_A MJ1247, hypothetical pr 53.5 28 0.00095 31.1 6.6 90 65-171 41-133 (180)
5 3i9v_6 NADH-quinone oxidoreduc 42.9 14 0.00047 35.8 3.0 27 449-478 138-164 (181)
6 1eci_A Ectatomin; pore-forming 40.9 20 0.00069 26.5 2.8 34 544-584 3-36 (37)
7 1m3s_A Hypothetical protein YC 39.4 73 0.0025 28.5 7.1 90 65-170 38-130 (186)
8 3s4y_A Thiamin pyrophosphokina 38.9 1E+02 0.0035 30.4 8.6 80 71-153 72-162 (247)
9 3k94_A Thiamin pyrophosphokina 37.7 64 0.0022 31.5 6.8 89 58-154 37-130 (223)
10 1vim_A Hypothetical protein AF 37.5 68 0.0023 29.6 6.7 89 65-169 48-139 (200)
11 2yva_A DNAA initiator-associat 37.0 2E+02 0.0068 25.8 9.6 104 64-170 41-163 (196)
12 3o6p_A Peptide ABC transporter 36.6 9.7 0.00033 35.3 0.8 29 492-520 17-45 (229)
13 3mel_A Thiamin pyrophosphokina 33.5 37 0.0013 33.0 4.4 90 57-153 35-133 (222)
14 3lvu_A ABC transporter, peripl 33.1 17 0.00059 34.2 1.9 29 492-520 14-42 (258)
15 1u8x_X Maltose-6'-phosphate gl 32.3 85 0.0029 33.8 7.3 109 28-152 57-194 (472)
16 3fxa_A SIS domain protein; str 32.0 72 0.0025 29.0 5.9 95 65-171 46-144 (201)
17 3etn_A Putative phosphosugar i 31.1 2E+02 0.007 26.9 9.0 95 65-170 60-159 (220)
18 3kn3_A Putative periplasmic pr 30.6 41 0.0014 33.3 4.2 48 519-566 187-238 (242)
19 3lm8_A Thiamine pyrophosphokin 29.8 1.5E+02 0.0052 28.7 8.0 88 58-154 38-133 (222)
20 1x92_A APC5045, phosphoheptose 29.4 1.6E+02 0.0054 26.6 7.7 49 121-170 113-167 (199)
21 1o6d_A Hypothetical UPF0247 pr 28.3 2.3E+02 0.0077 26.8 8.6 42 132-173 81-124 (163)
22 3muq_A Uncharacterized conserv 28.1 32 0.0011 33.7 2.9 67 500-566 154-233 (237)
23 3pam_A Transmembrane protein; 27.5 22 0.00077 33.4 1.7 28 493-520 15-42 (259)
24 3sg0_A Extracellular ligand-bi 25.8 2.4E+02 0.0082 27.0 8.6 99 45-152 141-245 (386)
25 3cq9_A Uncharacterized protein 25.2 41 0.0014 32.9 3.1 90 57-153 36-134 (227)
26 3snr_A Extracellular ligand-bi 23.9 1.7E+02 0.0057 27.7 7.0 97 46-151 118-220 (362)
27 1olt_A Oxygen-independent copr 23.6 3E+02 0.01 28.8 9.5 29 68-96 141-169 (457)
28 2f06_A Conserved hypothetical 23.5 2.3E+02 0.0078 24.6 7.3 18 132-149 119-136 (144)
29 1to0_A Hypothetical UPF0247 pr 21.2 4.9E+02 0.017 24.5 9.5 42 132-173 86-130 (167)
30 2lci_A Protein OR36; structura 21.2 1.6E+02 0.0054 26.5 5.7 68 81-155 17-85 (134)
No 1
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=99.67 E-value=7.6e-17 Score=149.10 Aligned_cols=143 Identities=20% Similarity=0.215 Sum_probs=112.1
Q ss_pred CceEEEEEecCCCCCCCCChhhhHHHHHHHHHhcCccCce-EEEEEecCCC--CChhHHHHhhhcCCceeeccC------
Q 006692 28 AKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPV-SISAYGDTNR--IPASVQHALSSTGIALNHVPA------ 98 (635)
Q Consensus 28 AkTAVFWDIENCPVPsG~da~~Va~NIrsAL~klGY~GpV-TIrAYGDls~--ip~~vl~aLsSSGIsLihVPa------ 98 (635)
.+++||||.+||..... +......+++..++.+...|.+ ..++||++.. .....+++|...|++++..|.
T Consensus 10 ~rvavfiD~~Nl~~~~~-~~~~~~~d~~~l~~~~~~~g~l~~~~~Y~~~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~~ 88 (165)
T 2qip_A 10 EKIAILVDVQNVYYTCR-EAYRSNFDYNQFWYVATQEKEVVSAKAYAIASNDPKQRQFHHILRGVGFEVMLKPYIQRRDG 88 (165)
T ss_dssp EEEEEEEEHHHHHHHHH-HHHSSCBCHHHHHHHHTTTEEEEEEEEEECCCCCHHHHHHHHHHHHHTCEEEECCCCCCSSC
T ss_pred CcEEEEEEHHHHHHHHH-HHcCCCCCHHHHHHHHhcCCEEEEEEEEEccCCchhHHHHHHHHHHCCcEEEEEeeeeccCC
Confidence 47999999999986421 0000112234444444455766 5799998764 235577899999999998773
Q ss_pred CCcchhhhHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHHhhc-CCeEEEeccCC-CChhHHhhcCeEEEecccc
Q 006692 99 GVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMR-RYNILLAQPHK-ASAPLVAAAKSVWLWTSLV 174 (635)
Q Consensus 99 G~KDAADkkMLVDML~WAlDNPpPANIMLISGDrDFS~aL~~LReR-GYNILLAqP~~-AS~~L~aaAd~vWlWeSLL 174 (635)
..|++.|..|.+||+.++ +..+.++|+|||.||.+++..||++ |..|+++...+ ++..|..+|+.++.+++++
T Consensus 89 ~~k~~~Dv~laiD~~~~a---~~~d~~vLvSgD~DF~plv~~lr~~~G~~V~v~g~~~~~s~~L~~~ad~fi~l~~~~ 163 (165)
T 2qip_A 89 SAKGDWDVGITLDAIEIA---PDVDRVILVSGDGDFSLLVERIQQRYNKKVTVYGVPRLTSQTLIDCADNFVAIDDDF 163 (165)
T ss_dssp CCSCCCHHHHHHHHHHHG---GGCSEEEEECCCGGGHHHHHHHHHHHCCEEEEEECGGGSCHHHHHHSSEEEECSGGG
T ss_pred ccCCCccHHHHHHHHHhh---ccCCEEEEEECChhHHHHHHHHHHHcCcEEEEEeCCCcChHHHHHhCCEEEecchhh
Confidence 368899999999999997 5689999999999999999999997 99999988554 7899999999999998875
No 2
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=61.86 E-value=33 Score=30.68 Aligned_cols=96 Identities=19% Similarity=0.132 Sum_probs=59.2
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCcchhhhHHHHHHHHhhhcCCCCceEEEEeCCc---chHHHHHHH
Q 006692 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDR---DFSNALHQL 141 (635)
Q Consensus 65 GpVTIrAYGDls~ip~~vl~aLsSSGIsLihVPaG~KDAADkkMLVDML~WAlDNPpPANIMLISGDr---DFS~aL~~L 141 (635)
.+|.|.+.|.....-..+...|...|+.+..++.+. ..+.+. +..-.+-+-+++||... +...++..+
T Consensus 40 ~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~------~~~~~~---~~~~~~~d~~i~iS~sG~t~~~~~~~~~a 110 (187)
T 3sho_A 40 DHVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGG------STLTIT---LANLRPTDLMIGVSVWRYLRDTVAALAGA 110 (187)
T ss_dssp SEEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCT------HHHHHH---HHTCCTTEEEEEECCSSCCHHHHHHHHHH
T ss_pred CEEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCc------hhHHHH---HhcCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 456666666544444556667888898887775221 111111 11223345677777543 566678888
Q ss_pred hhcCCeEEEeccCCCChhHHhhcCeEEEe
Q 006692 142 RMRRYNILLAQPHKASAPLVAAAKSVWLW 170 (635)
Q Consensus 142 ReRGYNILLAqP~~AS~~L~aaAd~vWlW 170 (635)
+++|..|+++..... .+|...|+.++.-
T Consensus 111 k~~g~~vi~IT~~~~-s~l~~~ad~~l~~ 138 (187)
T 3sho_A 111 AERGVPTMALTDSSV-SPPARIADHVLVA 138 (187)
T ss_dssp HHTTCCEEEEESCTT-SHHHHHCSEEEEC
T ss_pred HHCCCCEEEEeCCCC-CcchhhCcEEEEe
Confidence 999999998875433 4677888877654
No 3
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=56.97 E-value=47 Score=29.57 Aligned_cols=96 Identities=15% Similarity=0.128 Sum_probs=59.6
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCcchhhhHHHHHHHHhhhcCCCCceEEEEeCCc---chHHHHHHH
Q 006692 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDR---DFSNALHQL 141 (635)
Q Consensus 65 GpVTIrAYGDls~ip~~vl~aLsSSGIsLihVPaG~KDAADkkMLVDML~WAlDNPpPANIMLISGDr---DFS~aL~~L 141 (635)
++|.|.+.|.....-..+...|...|+....+... ..+.. .+..-.+-+-+++||... +...++..+
T Consensus 50 ~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~-------~~~~~---~~~~~~~~d~vI~iS~sG~t~~~~~~~~~a 119 (183)
T 2xhz_A 50 GKVVVMGMGASGHIGRKMAATFASTGTPSFFVHPG-------EAAHG---DLGMVTPQDVVIAISNSGESSEITALIPVL 119 (183)
T ss_dssp SCEEEEECHHHHHHHHHHHHHHHTTTCCEEECCTT-------HHHHH---TSTTCCTTCEEEEECSSSCCHHHHHHHHHH
T ss_pred CeEEEEeecHHHHHHHHHHHHHHhcCceEEEeCch-------HHhhh---hhccCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 47777777765444445666777788877665321 11111 111123446677788653 566677888
Q ss_pred hhcCCeEEEeccCCCChhHHhhcCeEEEec
Q 006692 142 RMRRYNILLAQPHKASAPLVAAAKSVWLWT 171 (635)
Q Consensus 142 ReRGYNILLAqP~~AS~~L~aaAd~vWlWe 171 (635)
+++|..|+++..... .+|...|+.++...
T Consensus 120 k~~g~~vi~IT~~~~-s~la~~ad~~l~~~ 148 (183)
T 2xhz_A 120 KRLHVPLICITGRPE-SSMARAADVHLCVK 148 (183)
T ss_dssp HTTTCCEEEEESCTT-SHHHHHSSEEEECC
T ss_pred HHCCCCEEEEECCCC-ChhHHhCCEEEEeC
Confidence 899999998875433 46888888776543
No 4
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=53.52 E-value=28 Score=31.09 Aligned_cols=90 Identities=16% Similarity=0.069 Sum_probs=56.5
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCcchhhhHHHHHHHHhhhcCCCCceEEEEeCCc---chHHHHHHH
Q 006692 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDR---DFSNALHQL 141 (635)
Q Consensus 65 GpVTIrAYGDls~ip~~vl~aLsSSGIsLihVPaG~KDAADkkMLVDML~WAlDNPpPANIMLISGDr---DFS~aL~~L 141 (635)
.+|.|.+.|....+-..+...|...|+....+... .+..-.+-+-+++||... +...++..+
T Consensus 41 ~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~---------------~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a 105 (180)
T 1jeo_A 41 KKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGET---------------TTPSYEKDDLLILISGSGRTESVLTVAKKA 105 (180)
T ss_dssp SSEEEECCHHHHHHHHHHHHHHHHTTCCEEETTST---------------TCCCCCTTCEEEEEESSSCCHHHHHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHHHHcCCeEEEeCCC---------------ccccCCCCCEEEEEeCCCCcHHHHHHHHHH
Confidence 45666666654444445556677788766655321 011123456678888654 566677888
Q ss_pred hhcCCeEEEeccCCCChhHHhhcCeEEEec
Q 006692 142 RMRRYNILLAQPHKASAPLVAAAKSVWLWT 171 (635)
Q Consensus 142 ReRGYNILLAqP~~AS~~L~aaAd~vWlWe 171 (635)
+++|-.|+++.....+ |...|+.++.-.
T Consensus 106 k~~g~~vi~IT~~~~s--l~~~ad~~l~~~ 133 (180)
T 1jeo_A 106 KNINNNIIAIVCECGN--VVEFADLTIPLE 133 (180)
T ss_dssp HTTCSCEEEEESSCCG--GGGGCSEEEECC
T ss_pred HHCCCcEEEEeCCCCh--HHHhCCEEEEeC
Confidence 8999999988765544 888888776543
No 5
>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_6* 2fug_6* 3iam_6* 3ias_6* 3m9s_6*
Probab=42.87 E-value=14 Score=35.85 Aligned_cols=27 Identities=11% Similarity=0.063 Sum_probs=20.9
Q ss_pred CCCCCCccchhhHHHHHHHHHhhhhccccC
Q 006692 449 QGRLTPSEYVQGLIGVILLALNTLKIERVV 478 (635)
Q Consensus 449 ~g~~~~s~~~q~li~~il~al~~lk~eki~ 478 (635)
+|||+ .++.+++.|+..++.+|.|++-
T Consensus 138 PGCPP---~Pe~il~~l~~l~~ki~~~~~~ 164 (181)
T 3i9v_6 138 PGCPP---RPEALIYAVMQLQKKVRGQAYN 164 (181)
T ss_dssp CCSSC---CHHHHHHHHHHHHHHHTTCCBC
T ss_pred eCCCC---CHHHHHHHHHHHHHHHhhcccc
Confidence 78888 4566788888888888888763
No 6
>1eci_A Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=40.89 E-value=20 Score=26.50 Aligned_cols=34 Identities=24% Similarity=0.557 Sum_probs=27.6
Q ss_pred CcHHHHHHHHHHHcCccchhhhhhhhhhHHHHHHHHhhhhh
Q 006692 544 YPKEVWDRIQKFLTSSSGRSAIMASQCRYEAALILKNSCLP 584 (635)
Q Consensus 544 ~pk~~~d~i~~fl~s~~g~s~i~~s~~ry~aa~~lk~~cl~ 584 (635)
-||.+|++|---+.+ |+-.|-=.-|+.+|+.|=|
T Consensus 3 ipkkiweticpt~~~-------~akkc~g~iat~ik~~c~k 36 (37)
T 1eci_A 3 IPKKIWETVCPTVEP-------WAKKCSGDIATYIKRECGK 36 (37)
T ss_dssp CCHHHHHHHHHHHHH-------HHHTBCHHHHHHHHHHHHC
T ss_pred chHHHHHHhCcchHH-------HHHHccchHHHHHHHHhcc
Confidence 589999999766543 7778888999999999954
No 7
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=39.44 E-value=73 Score=28.47 Aligned_cols=90 Identities=9% Similarity=-0.011 Sum_probs=54.8
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCcchhhhHHHHHHHHhhhcCCCCceEEEEeCCc---chHHHHHHH
Q 006692 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDR---DFSNALHQL 141 (635)
Q Consensus 65 GpVTIrAYGDls~ip~~vl~aLsSSGIsLihVPaG~KDAADkkMLVDML~WAlDNPpPANIMLISGDr---DFS~aL~~L 141 (635)
.+|.|.+.|....+-..+...|...|+....+... + +..-.+-+-+++||... +...++..+
T Consensus 38 ~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~-----------~----~~~~~~~d~vI~iS~sG~t~~~~~~~~~a 102 (186)
T 1m3s_A 38 HQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEI-----------L----TPPLAEGDLVIIGSGSGETKSLIHTAAKA 102 (186)
T ss_dssp SCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTST-----------T----CCCCCTTCEEEEECSSSCCHHHHHHHHHH
T ss_pred CeEEEEecCHHHHHHHHHHHHHHhcCCeEEEeCcc-----------c----ccCCCCCCEEEEEcCCCCcHHHHHHHHHH
Confidence 35555555544333344556677788766655221 0 11112345677788654 456677888
Q ss_pred hhcCCeEEEeccCCCChhHHhhcCeEEEe
Q 006692 142 RMRRYNILLAQPHKASAPLVAAAKSVWLW 170 (635)
Q Consensus 142 ReRGYNILLAqP~~AS~~L~aaAd~vWlW 170 (635)
+++|-.|+++..... .+|...|+.++.-
T Consensus 103 k~~g~~vi~IT~~~~-s~l~~~ad~~l~~ 130 (186)
T 1m3s_A 103 KSLHGIVAALTINPE-SSIGKQADLIIRM 130 (186)
T ss_dssp HHTTCEEEEEESCTT-SHHHHHCSEEEEC
T ss_pred HHCCCEEEEEECCCC-CchHHhCCEEEEe
Confidence 899999998876443 4677778876653
No 8
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=38.90 E-value=1e+02 Score=30.43 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=50.6
Q ss_pred EEecCCCCChhHHHHhhhcCCceeeccCCCcchhhhHHHHHHHHh--hhcCCCCceEEEEeC--Cc---chHHHHHHH--
Q 006692 71 AYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFW--AVDNPAPSNYLLISG--DR---DFSNALHQL-- 141 (635)
Q Consensus 71 AYGDls~ip~~vl~aLsSSGIsLihVPaG~KDAADkkMLVDML~W--AlDNPpPANIMLISG--Dr---DFS~aL~~L-- 141 (635)
+.||...+..++++.+.+.|+.+++.| .||..|-.+.+..+.- .........|+++-+ .| -++. |+.|
T Consensus 72 ivGD~DSi~~~~~~~~~~~~~~i~~~p--eKD~TD~ekAl~~~~~~~~~~~~~~~~I~ilGa~GGR~DH~Lan-i~lL~~ 148 (247)
T 3s4y_A 72 INGDFDSIRPEVREYYATKGCELISTP--DQDHTDFTKCLKMLQKKIEEKDLKVDVIVTLGGLAGRFDQIMAS-VNTLFQ 148 (247)
T ss_dssp EEECCSSSCHHHHHHHHHTTCEEEECC--CTTSCHHHHHHHHHHHHHHHTTCCCSEEEEECCSSSSHHHHHHH-HHHHHH
T ss_pred EEcCCcCCCHHHHHHHHhcCCEEEECC--CCCcCHHHHHHHHHHHhhhhccCCCCEEEEEecCCCchhHHHHH-HHHHHH
Confidence 569999999999999999999999855 6888887776654431 111223455555442 22 2333 3333
Q ss_pred -hh-cCCeEEEecc
Q 006692 142 -RM-RRYNILLAQP 153 (635)
Q Consensus 142 -Re-RGYNILLAqP 153 (635)
.. .+.+|.|+..
T Consensus 149 ~~~~~~~~i~lid~ 162 (247)
T 3s4y_A 149 ATHITPFPIIIIQE 162 (247)
T ss_dssp GGGTCSSCEEEEET
T ss_pred HhhccCceEEEEeC
Confidence 22 5677777754
No 9
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans}
Probab=37.66 E-value=64 Score=31.50 Aligned_cols=89 Identities=25% Similarity=0.371 Sum_probs=56.5
Q ss_pred HHhcCccCceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCcchhhhHHHHHHHHhhhcCCCCceEEEEeC--Cc--c
Q 006692 58 LVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISG--DR--D 133 (635)
Q Consensus 58 L~klGY~GpVTIrAYGDls~ip~~vl~aLsSSGIsLihVPaG~KDAADkkMLVDML~WAlDNPpPANIMLISG--Dr--D 133 (635)
|.++|+.-. .+.||...+..+.++.+.+.|+.+++.|. .||..|-.+.+. +|.+. .+..|+++-+ .| .
T Consensus 37 l~~~g~~Pd---~ivGD~DSi~~~~~~~~~~~~~~i~~~p~-eKD~TD~e~Al~---~a~~~-g~~~I~i~Ga~GGR~DH 108 (223)
T 3k94_A 37 LLEAGFRPV---RAFGDFDSLPAEDVVKLQQAFPDLDVWPA-EKDKTDMEIALD---WAVEQ-TARCIRLFGATGGRLDH 108 (223)
T ss_dssp HHHHTCCCS---EEESCGGGSCHHHHHHHHHHCTTCCEECC-BTTBCHHHHHHH---HHHTT-CCSEEEEESCSSSSHHH
T ss_pred HHHcCCCCC---EEEeCcccCCHHHHHHHHhcCCeEEECCC-cCCCCHHHHHHH---HHHHc-CCCEEEEEcCCCCchhH
Confidence 445676532 35799999999999999999999999986 577777765544 45444 3345555432 22 1
Q ss_pred hHHHHHHH-hhcCCeEEEeccC
Q 006692 134 FSNALHQL-RMRRYNILLAQPH 154 (635)
Q Consensus 134 FS~aL~~L-ReRGYNILLAqP~ 154 (635)
+...|+.| +..+.+|.++...
T Consensus 109 ~lani~lL~~~~~~~i~lid~~ 130 (223)
T 3k94_A 109 LFGNVELLLKYADRPIEIVDRQ 130 (223)
T ss_dssp HHHHHHHHHHTTTSCEEEEETT
T ss_pred HHHHHHHHHhccCCeEEEEcCC
Confidence 33333333 3467778777543
No 10
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=37.53 E-value=68 Score=29.55 Aligned_cols=89 Identities=13% Similarity=0.108 Sum_probs=55.5
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCcchhhhHHHHHHHHhhhcCCCCceEEEEeCCc---chHHHHHHH
Q 006692 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDR---DFSNALHQL 141 (635)
Q Consensus 65 GpVTIrAYGDls~ip~~vl~aLsSSGIsLihVPaG~KDAADkkMLVDML~WAlDNPpPANIMLISGDr---DFS~aL~~L 141 (635)
++|.|.+.|....+-..+...|...|+.+..+... .+..-.+-+-+++||... +...++..+
T Consensus 48 ~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~---------------~~~~~~~~DvvI~iS~SG~t~~~i~~~~~a 112 (200)
T 1vim_A 48 RSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGET---------------VTPRITDQDVLVGISGSGETTSVVNISKKA 112 (200)
T ss_dssp SCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTST---------------TCCCCCTTCEEEEECSSSCCHHHHHHHHHH
T ss_pred CEEEEEEecHHHHHHHHHHHHHHhcCCeEEEeCCc---------------cccCCCCCCEEEEEeCCCCcHHHHHHHHHH
Confidence 45555555554334445566677778776655211 011122446677788643 566778888
Q ss_pred hhcCCeEEEeccCCCChhHHhhcCeEEE
Q 006692 142 RMRRYNILLAQPHKASAPLVAAAKSVWL 169 (635)
Q Consensus 142 ReRGYNILLAqP~~AS~~L~aaAd~vWl 169 (635)
+++|-.|+++..... .+|...|+.++.
T Consensus 113 k~~g~~vI~IT~~~~-s~La~~ad~~l~ 139 (200)
T 1vim_A 113 KDIGSKLVAVTGKRD-SSLAKMADVVMV 139 (200)
T ss_dssp HHHTCEEEEEESCTT-SHHHHHCSEEEE
T ss_pred HHCCCeEEEEECCCC-ChHHHhCCEEEE
Confidence 999999998875443 468888887765
No 11
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=37.02 E-value=2e+02 Score=25.83 Aligned_cols=104 Identities=12% Similarity=0.065 Sum_probs=56.7
Q ss_pred cCceEEEEEecCCCCChhHHHHhh------hcCCceeeccCCC-------cchhhhHHHHHHHHhhhcCCCCceEEEEeC
Q 006692 64 CGPVSISAYGDTNRIPASVQHALS------STGIALNHVPAGV-------KDASDKKILVDMLFWAVDNPAPSNYLLISG 130 (635)
Q Consensus 64 ~GpVTIrAYGDls~ip~~vl~aLs------SSGIsLihVPaG~-------KDAADkkMLVDML~WAlDNPpPANIMLISG 130 (635)
.++|-+-+.|.....-..+...|. ..|+....+.... .+.....+..+.+. ..-.+-+-+++||.
T Consensus 41 a~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~--~~~~~~DvvI~iS~ 118 (196)
T 2yva_A 41 GNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVR--ALGHAGDVLLAIST 118 (196)
T ss_dssp TCCEEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESSCCHHHHHHHTTSTTGGGHHHHHHH--HHCCTTCEEEEECS
T ss_pred CCEEEEEeCchhhHHHHHHHHHHhccccccCCCCceEeecCchHHHHHHhcCCCHHHHHHHHHH--hcCCCCCEEEEEeC
Confidence 355666566654333334444565 6777666553210 01111222222221 11234566777885
Q ss_pred C---cchHHHHHHHhhcCCeEEEeccCCCChhHHhh---cCeEEEe
Q 006692 131 D---RDFSNALHQLRMRRYNILLAQPHKASAPLVAA---AKSVWLW 170 (635)
Q Consensus 131 D---rDFS~aL~~LReRGYNILLAqP~~AS~~L~aa---Ad~vWlW 170 (635)
. .+...++..++++|-.|+.+.... ..+|... |+.++.-
T Consensus 119 SG~t~~~i~~~~~ak~~g~~vI~IT~~~-~s~la~~~~~ad~~l~~ 163 (196)
T 2yva_A 119 RGNSRDIVKAVEAAVTRDMTIVALTGYD-GGELAGLLGPQDVEIRI 163 (196)
T ss_dssp SSCCHHHHHHHHHHHHTTCEEEEEECTT-CHHHHTTCCTTSEEEEC
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCC-CchhhhcccCCCEEEEe
Confidence 4 356778888899999999887543 3456666 7765543
No 12
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=36.58 E-value=9.7 Score=35.26 Aligned_cols=29 Identities=28% Similarity=0.588 Sum_probs=24.9
Q ss_pred CCCCCCchHHHHHHHHHHhhHHHHhhcCC
Q 006692 492 EPKHRNTDVRKALNCAIEQHMVIKRSLGA 520 (635)
Q Consensus 492 d~~~~~~dvkkale~ai~~~~vv~~~~g~ 520 (635)
.+-+.+..|||||..||-.+.+|+..++.
T Consensus 17 ~~p~~d~~vRqAl~~aiDr~~i~~~~~~g 45 (229)
T 3o6p_A 17 KSPFRNANLRKAISYSIDRKALVESILGD 45 (229)
T ss_dssp TCGGGCHHHHHHHHHTCCHHHHHHTTTCS
T ss_pred cccCCCHHHHHHHHHHhhHHHHHHHHHcC
Confidence 45577889999999999999999988654
No 13
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis}
Probab=33.47 E-value=37 Score=33.01 Aligned_cols=90 Identities=21% Similarity=0.231 Sum_probs=55.4
Q ss_pred HHHhcCccCceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCcchhhhHHHHHHHHhhhcCCCCceEEEEeCC--c-c
Q 006692 57 ALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGD--R-D 133 (635)
Q Consensus 57 AL~klGY~GpVTIrAYGDls~ip~~vl~aLsSSGIsLihVPaG~KDAADkkMLVDML~WAlDNPpPANIMLISGD--r-D 133 (635)
.|.++|+.-. .+.||...+..+.++.+.+.|+.++..|. .||..|-.+.+. +|..+.+...|+++-+- | |
T Consensus 35 ~l~~~g~~Pd---~ivGDfDSi~~~~~~~~~~~~~~~~~~~~-eKD~TD~e~Al~---~~~~~~~~~~I~i~Ga~GgRlD 107 (222)
T 3mel_A 35 HLLEADLPLQ---LAVGDFDSLSREEYHFVQETTETLIQAPA-EKDDTDTQLALQ---EALQRFPQAEMTIIGATGGRID 107 (222)
T ss_dssp HHHTTTCCCC---EEEECCTTSCTTHHHHHHHHCSSEEECCS-SCSSCHHHHHHH---HHHHHCTTSEEEEECCCSSCHH
T ss_pred HHHHCCCCCC---EEEeCcccCCHHHHHHHHhcCCcEEECCc-cCCCCHHHHHHH---HHHHhCCCceEEEEccCCCCHH
Confidence 4556777532 36799999999999999999999988776 488888655443 44443333455555432 2 1
Q ss_pred -hHHHHHH-----HhhcCCeEEEecc
Q 006692 134 -FSNALHQ-----LRMRRYNILLAQP 153 (635)
Q Consensus 134 -FS~aL~~-----LReRGYNILLAqP 153 (635)
+...|+. ++.++.+|.|+..
T Consensus 108 H~lani~lL~~~~~~~~~~~i~lid~ 133 (222)
T 3mel_A 108 HLLANLWLPFEPRFQGVLRQIRLCDR 133 (222)
T ss_dssp HHHHHHTGGGSHHHHTTGGGEEEECS
T ss_pred HHHHHHHHHHhhHHhccCceEEEEeC
Confidence 2222222 3345667777754
No 14
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=33.07 E-value=17 Score=34.18 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=25.3
Q ss_pred CCCCCCchHHHHHHHHHHhhHHHHhhcCC
Q 006692 492 EPKHRNTDVRKALNCAIEQHMVIKRSLGA 520 (635)
Q Consensus 492 d~~~~~~dvkkale~ai~~~~vv~~~~g~ 520 (635)
.+-+.+..|||||..||-++.||+..++.
T Consensus 14 ~~p~~d~~vRqAl~~aiDr~~iv~~~~~g 42 (258)
T 3lvu_A 14 RAPFDDWRLREALLLAFNFEFINDTVTGG 42 (258)
T ss_dssp STTTTSHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred CCcccCHHHHHHHHHhcCHHHHHHHHhcc
Confidence 45678899999999999999999998654
No 15
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2
Probab=32.30 E-value=85 Score=33.82 Aligned_cols=109 Identities=16% Similarity=0.173 Sum_probs=60.3
Q ss_pred CceEEEEEecCCCCCCCCChhhhHHHHHHHHHhcCccCceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCcchh--h
Q 006692 28 AKTSVWWDIENCQVPKNCDPHTIAQNISSALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDAS--D 105 (635)
Q Consensus 28 AkTAVFWDIENCPVPsG~da~~Va~NIrsAL~klGY~GpVTIrAYGDls~ip~~vl~aLsSSGIsLihVPaG~KDAA--D 105 (635)
+.--++||++.=. ...+....+..|... ..+..|++..| ..++|..+.|-++-+|.+.+..+ |
T Consensus 57 ~~eV~L~Di~~e~------~~~~~~~~~~~l~~~--~~~~~I~~t~D-------~~eal~~AD~VViaag~~~~~g~~rd 121 (472)
T 1u8x_X 57 IRKLKLYDNDKER------QDRIAGACDVFIREK--APDIEFAATTD-------PEEAFTDVDFVMAHIRVGKYAMRALD 121 (472)
T ss_dssp EEEEEEECSCHHH------HHHHHHHHHHHHHHH--CTTSEEEEESC-------HHHHHSSCSEEEECCCTTHHHHHHHH
T ss_pred CCEEEEEeCCHHH------HHHHHHHHHHHhccC--CCCCEEEEECC-------HHHHHcCCCEEEEcCCCccccccchh
Confidence 4567899986411 111221112222222 23567777644 33567666776666666544322 2
Q ss_pred h--------------------------HHHHHHHHhhhcCCCCceEEEEeCCcchH-HHHHHHhhcCCeEEEec
Q 006692 106 K--------------------------KILVDMLFWAVDNPAPSNYLLISGDRDFS-NALHQLRMRRYNILLAQ 152 (635)
Q Consensus 106 k--------------------------kMLVDML~WAlDNPpPANIMLISGDrDFS-~aL~~LReRGYNILLAq 152 (635)
. .++.|+..-....-|-+-|+.+|..-|.. .++.++. -..+||..|
T Consensus 122 ~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~~-p~~rViG~c 194 (472)
T 1u8x_X 122 EQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLR-PNSKILNIC 194 (472)
T ss_dssp HHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHS-TTCCEEECC
T ss_pred hhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhC-CCCCEEEeC
Confidence 1 35666666555555557777777777764 5666665 345788886
No 16
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=32.02 E-value=72 Score=29.04 Aligned_cols=95 Identities=9% Similarity=0.147 Sum_probs=58.6
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCcchhhhHHHHHHHHhhh-cCCCCceEEEEeCCc---chHHHHHH
Q 006692 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAV-DNPAPSNYLLISGDR---DFSNALHQ 140 (635)
Q Consensus 65 GpVTIrAYGDls~ip~~vl~aLsSSGIsLihVPaG~KDAADkkMLVDML~WAl-DNPpPANIMLISGDr---DFS~aL~~ 140 (635)
++|.|.+.|....+-..+...|...|+....+.. . +++.... .-.+-+-+++||... +...++..
T Consensus 46 ~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~-------~----~~~~~~~~~~~~~dvvI~iS~sG~t~~~~~~~~~ 114 (201)
T 3fxa_A 46 GKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTP-------S----DAVHGTLGVLQKEDILILISKGGNTGELLNLIPA 114 (201)
T ss_dssp SCEEEECCTHHHHHHHHHHHHHHHTTCCEEECCH-------H----HHTTTGGGGCCTTCEEEEECSSSCCHHHHTTHHH
T ss_pred CcEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCc-------h----HHHhhhhhcCCCCCEEEEEeCCCCCHHHHHHHHH
Confidence 4677766666544444555667778887776521 1 1111111 123346677787653 45567788
Q ss_pred HhhcCCeEEEeccCCCChhHHhhcCeEEEec
Q 006692 141 LRMRRYNILLAQPHKASAPLVAAAKSVWLWT 171 (635)
Q Consensus 141 LReRGYNILLAqP~~AS~~L~aaAd~vWlWe 171 (635)
++++|-.|+++..... .+|...|+.++...
T Consensus 115 ak~~g~~vi~IT~~~~-s~l~~~ad~~l~~~ 144 (201)
T 3fxa_A 115 CKTKGSTLIGVTENPD-SVIAKEADIFFPVS 144 (201)
T ss_dssp HHHHTCEEEEEESCTT-SHHHHHCSEEEECC
T ss_pred HHHcCCeEEEEECCCC-ChhHHhCCEEEEcC
Confidence 8999999999875443 45777788777653
No 17
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=31.08 E-value=2e+02 Score=26.92 Aligned_cols=95 Identities=16% Similarity=0.133 Sum_probs=57.8
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCcchhhhHHHHHHHHhhhcCCCCceEEEEeCC---cchHHHHHHH
Q 006692 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGD---RDFSNALHQL 141 (635)
Q Consensus 65 GpVTIrAYGDls~ip~~vl~aLsSSGIsLihVPaG~KDAADkkMLVDML~WAlDNPpPANIMLISGD---rDFS~aL~~L 141 (635)
++|.|.+.|....+-..+...|...|+....+.... ++. ..+..-.+-+-+++||.. .+...++..+
T Consensus 60 ~~I~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~~~~-------~~~---~~~~~~~~~DlvI~iS~SG~t~~~i~~~~~a 129 (220)
T 3etn_A 60 GKLVTSGMGKAGQIAMNIATTFCSTGIPSVFLHPSE-------AQH---GDLGILQENDLLLLISNSGKTREIVELTQLA 129 (220)
T ss_dssp CCEEEECSHHHHHHHHHHHHHHHHTTCCEEECCTTG-------GGB---TGGGGCCTTCEEEEECSSSCCHHHHHHHHHH
T ss_pred CEEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCCHH-------HHH---hhhccCCCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456666666544444455566778888776664321 000 001112334667777754 3566778888
Q ss_pred hh--cCCeEEEeccCCCChhHHhhcCeEEEe
Q 006692 142 RM--RRYNILLAQPHKASAPLVAAAKSVWLW 170 (635)
Q Consensus 142 Re--RGYNILLAqP~~AS~~L~aaAd~vWlW 170 (635)
++ +|-.|+++..... .+|...|+.++..
T Consensus 130 k~~~~Ga~vI~IT~~~~-s~La~~aD~~l~~ 159 (220)
T 3etn_A 130 HNLNPGLKFIVITGNPD-SPLASESDVCLST 159 (220)
T ss_dssp HHHCTTCEEEEEESCTT-SHHHHHSSEEEEC
T ss_pred HhcCCCCeEEEEECCCC-ChhHHhCCEEEEc
Confidence 99 9999999875433 4677778877664
No 18
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=30.56 E-value=41 Score=33.32 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=27.4
Q ss_pred CCcceeecCCCccceeec-cCCCCCCCcHH---HHHHHHHHHcCccchhhhh
Q 006692 519 GALPLYVPKNEKLWNCEN-LYGNPNQYPKE---VWDRIQKFLTSSSGRSAIM 566 (635)
Q Consensus 519 g~~~l~~~kne~lwkcvn-~~~~~~~~pk~---~~d~i~~fl~s~~g~s~i~ 566 (635)
.+|.+++-.++.|-+--- |-.||..||.. .=...-+||.|+.|..+|.
T Consensus 187 ~~l~i~~~gd~~l~n~y~~~~v~p~~~~~~~~~~a~~f~~~l~s~~~q~~i~ 238 (242)
T 3kn3_A 187 PPMVIVLEGDNTLKNFYSIMAVNPKRCEKADYKGAKQFIDWIVSEKMQAEIA 238 (242)
T ss_dssp CSCEEEECCCGGGCCEEEEEEECTTTCTTSCHHHHHHHHHHHHSHHHHHHHH
T ss_pred CCeEEEEcCCcceEeeeEEEEECcccCCccCHHHHHHHHHHHcCHHHHHHHH
Confidence 346666666666666555 55666656632 2234445566666665553
No 19
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=29.79 E-value=1.5e+02 Score=28.69 Aligned_cols=88 Identities=23% Similarity=0.346 Sum_probs=55.4
Q ss_pred HHhcCccCceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCcchhhhHHHHHHHHhhhcCCCCceEEEEeC--Cc---
Q 006692 58 LVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISG--DR--- 132 (635)
Q Consensus 58 L~klGY~GpVTIrAYGDls~ip~~vl~aLsSSGIsLihVPaG~KDAADkkMLVDML~WAlDNPpPANIMLISG--Dr--- 132 (635)
|.++|+.-. .+.||...+..+.++.+.+.|+.+++.|. .||..|-.+.+. +|.+. .+..|+++-+ .|
T Consensus 38 l~~~g~~Pd---~ivGDfDSi~~~~~~~~~~~~~~i~~~p~-eKD~TD~e~Al~---~a~~~-g~~~I~i~Ga~GgR~DH 109 (222)
T 3lm8_A 38 LLDAGIIPV---EAFGDFDSITEQERRRIEKAAPALHVYQA-EKDQTDLDLALD---WALEK-QPDIIQIFGITGGRADH 109 (222)
T ss_dssp HHHHTCCCS---EEESCSTTSCHHHHHHHHHHCTTCEEECC-CSSSCHHHHHHH---HHHHH-CCSEEEEESCCCSCHHH
T ss_pred HHHcCCCCc---EEEeCcccCCHHHHHHHHhcCCeEEEeCC-CCCCCHHHHHHH---HHHHc-CCCEEEEEcCCCCchhH
Confidence 445676532 36799999999999999999999999986 577777766544 44343 2345554432 22
Q ss_pred chHHHHHHH---hhcCCeEEEeccC
Q 006692 133 DFSNALHQL---RMRRYNILLAQPH 154 (635)
Q Consensus 133 DFS~aL~~L---ReRGYNILLAqP~ 154 (635)
-++. |+.| ...+.+|.|+...
T Consensus 110 ~lan-i~ll~~~~~~~~~i~lid~~ 133 (222)
T 3lm8_A 110 FLGN-IQLLYKGVKTNIKIRLIDKQ 133 (222)
T ss_dssp HHHH-HHHHHHHHHTTCEEEEEETT
T ss_pred HHHH-HHHHHHHHhcCCcEEEEeCC
Confidence 2333 3333 2346777777543
No 20
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=29.35 E-value=1.6e+02 Score=26.62 Aligned_cols=49 Identities=10% Similarity=0.035 Sum_probs=35.6
Q ss_pred CCceEEEEeCC---cchHHHHHHHhhcCCeEEEeccCCCChhHHhh---cCeEEEe
Q 006692 121 APSNYLLISGD---RDFSNALHQLRMRRYNILLAQPHKASAPLVAA---AKSVWLW 170 (635)
Q Consensus 121 pPANIMLISGD---rDFS~aL~~LReRGYNILLAqP~~AS~~L~aa---Ad~vWlW 170 (635)
+-+-+++||.. ++...++..+|++|-.|+++... ...+|... |+.++.-
T Consensus 113 ~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~-~~s~La~~~~~ad~~l~~ 167 (199)
T 1x92_A 113 PGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGR-DGGGMASLLLPEDVEIRV 167 (199)
T ss_dssp TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHCCTTCEEEEC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECC-CCCcHHhccccCCEEEEe
Confidence 45667778854 35677888889999999988753 34568887 8877654
No 21
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=28.31 E-value=2.3e+02 Score=26.83 Aligned_cols=42 Identities=24% Similarity=0.412 Sum_probs=31.2
Q ss_pred cchHHHHHHHhhcCCeEE-Eec-cCCCChhHHhhcCeEEEeccc
Q 006692 132 RDFSNALHQLRMRRYNIL-LAQ-PHKASAPLVAAAKSVWLWTSL 173 (635)
Q Consensus 132 rDFS~aL~~LReRGYNIL-LAq-P~~AS~~L~aaAd~vWlWeSL 173 (635)
.+|+..|..++..|-+|. ++. +..-++.+...|+..|....|
T Consensus 81 ~~fA~~l~~~~~~G~~i~FvIGGa~Gl~~~v~~rAd~~lSlS~m 124 (163)
T 1o6d_A 81 EEFADFLKDLEMKGKDITILIGGPYGLNEEIFAKAHRVFSLSKM 124 (163)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCTTCCCGGGGGGCSEEEECCSS
T ss_pred HHHHHHHHHHHhcCCeEEEEEECCCCCCHHHHHhhCceEEccCC
Confidence 379999999988776674 444 555678888888887776554
No 22
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=28.14 E-value=32 Score=33.74 Aligned_cols=67 Identities=24% Similarity=0.306 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhHHH---------HhhcCCcceeecCCCccceeec-cCCCCCCCc---HHHHHHHHHHHcCccchhhhh
Q 006692 500 VRKALNCAIEQHMVI---------KRSLGALPLYVPKNEKLWNCEN-LYGNPNQYP---KEVWDRIQKFLTSSSGRSAIM 566 (635)
Q Consensus 500 vkkale~ai~~~~vv---------~~~~g~~~l~~~kne~lwkcvn-~~~~~~~~p---k~~~d~i~~fl~s~~g~s~i~ 566 (635)
.-.+|..|.|.++.+ .++-++|.+++-+++.|.+--- +-.||..|| .|.=...-+||.|+.|...|.
T Consensus 154 m~~~l~~a~~~~~y~l~dr~t~l~~~~~~~l~i~~~gd~~l~n~y~v~~v~p~~~~~~~~~~a~~f~~wl~s~~gQ~~i~ 233 (237)
T 3muq_A 154 MGPTLNMASEMQGYTMSDRGTWLAYQNKLDLEILFQGDEKLFNPYQVILVNPERYPTINYQGAKAFSDWLVNPRGQELIN 233 (237)
T ss_dssp HHHHHHHHHHTTCBEEEEHHHHHHHGGGCSCEEEECCCGGGEEEEEEEEECTTTCTTSCHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEEechHHhhccccCCeEEEEcCCCceeeeeEEEEECcccCCccCHHHHHHHHHHHcCHHHHHHHH
Confidence 345555555555421 1333357777777777776655 666776676 333445556677777766654
No 23
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=27.47 E-value=22 Score=33.44 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=24.4
Q ss_pred CCCCCchHHHHHHHHHHhhHHHHhhcCC
Q 006692 493 PKHRNTDVRKALNCAIEQHMVIKRSLGA 520 (635)
Q Consensus 493 ~~~~~~dvkkale~ai~~~~vv~~~~g~ 520 (635)
+-+.+..|||||..||-.+.||+..++.
T Consensus 15 ~p~~d~~vRqAi~~aiDr~~i~~~v~~g 42 (259)
T 3pam_A 15 TLFKDKRVRQALSILFDFEWVNHHLFNN 42 (259)
T ss_dssp GGGCSHHHHHHHHHHCCHHHHHHHTSCS
T ss_pred ccccCHHHHHHHHHHhhHHHHHHHHhcc
Confidence 4467889999999999999999998654
No 24
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=25.79 E-value=2.4e+02 Score=26.96 Aligned_cols=99 Identities=13% Similarity=0.086 Sum_probs=56.5
Q ss_pred CChhhhHHHHHHHHHhcCccCceEEEEEecCCC---CChhHHHHhhhcCCceee---ccCCCcchhhhHHHHHHHHhhhc
Q 006692 45 CDPHTIAQNISSALVKMNYCGPVSISAYGDTNR---IPASVQHALSSTGIALNH---VPAGVKDASDKKILVDMLFWAVD 118 (635)
Q Consensus 45 ~da~~Va~NIrsAL~klGY~GpVTIrAYGDls~---ip~~vl~aLsSSGIsLih---VPaG~KDAADkkMLVDML~WAlD 118 (635)
.+....+..+-+.|.++|.+ +|.+- |.|... .-..++++|...|+++.. ++.+..+. ...+..+..
T Consensus 141 ~~~~~~~~~~~~~l~~~g~~-~ia~i-~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~--~~~~~~~~~---- 212 (386)
T 3sg0_A 141 PNDDIMAEAIGKYIAKTGAK-KVGYI-GFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASV--TGQVLKIIA---- 212 (386)
T ss_dssp CCHHHHHHHHHHHHHHTTCC-EEEEE-EESSHHHHHHHHHHHHHHHHHTCEECCCEEECTTCSCC--HHHHHHHHH----
T ss_pred CCcHHHHHHHHHHHHhcCCC-EEEEE-ecCchHHHHHHHHHHHHHHHcCCEEEEEEeeCCCCCcH--HHHHHHHHh----
Confidence 34445556666777776653 45433 443321 224567788899998763 33443332 222333322
Q ss_pred CCCCceEEEEeCCcchHHHHHHHhhcCCeEEEec
Q 006692 119 NPAPSNYLLISGDRDFSNALHQLRMRRYNILLAQ 152 (635)
Q Consensus 119 NPpPANIMLISGDrDFS~aL~~LReRGYNILLAq 152 (635)
..|.-|++...+.+...++..++++|+++-++.
T Consensus 213 -~~~dav~~~~~~~~a~~~~~~~~~~g~~~~~~~ 245 (386)
T 3sg0_A 213 -TKPDAVFIASAGTPAVLPQKALRERGFKGAIYQ 245 (386)
T ss_dssp -TCCSEEEEECCSGGGHHHHHHHHHTTCCSEEEC
T ss_pred -cCCCEEEEecCcchHHHHHHHHHHcCCCCcEEe
Confidence 235555555544778889999999998765443
No 25
>3cq9_A Uncharacterized protein LP_1622; Q88WK7_lacpl, transferase, thiamine pyrophosphokinase, NESG, LPR114, structural genomics, PSI-2; 2.20A {Lactobacillus plantarum WCFS1}
Probab=25.21 E-value=41 Score=32.90 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=45.3
Q ss_pred HHHhcCccCceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCcchhhhHHHHHHHHhhhcCCCCceEEEEe--CCc--
Q 006692 57 ALVKMNYCGPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLIS--GDR-- 132 (635)
Q Consensus 57 AL~klGY~GpVTIrAYGDls~ip~~vl~aLsSSGIsLihVPaG~KDAADkkMLVDML~WAlDNPpPANIMLIS--GDr-- 132 (635)
.|.++||.-. -+.||...++.+.++.+.+.|+.++..|. .||..|-.+.+ .+|....+...|+++- |.|
T Consensus 36 ~l~~~g~~Pd---~ivGDfDSi~~e~~~~~~~~~~~~~~~~~-~KD~TD~e~Al---~~a~~~~~~~~I~i~Ga~GgR~D 108 (227)
T 3cq9_A 36 RLVKRGIQPV---MVVGDFDSIDAAELQTVKDALVGAIVVKP-DQDHTDTQLAI---KSIFEQLQPDEVHLYGATGGRLD 108 (227)
T ss_dssp HHHHTTCCCS---EEESCC---------CHHHHHHTSEEECC-CSSSCHHHHHH---HHHHHHTCCSEEEEESCSSSCHH
T ss_pred HHHHcCCCCC---EEEeCCcCCCHHHHHHHHhcCceEEECCC-CCCCCHHHHHH---HHHHHhCCCceEEEEcCCCCchh
Confidence 3446677532 35799998888888888888988887765 46667765544 3444444433454443 222
Q ss_pred -chHHH--HHHHhhcCC--eEEEecc
Q 006692 133 -DFSNA--LHQLRMRRY--NILLAQP 153 (635)
Q Consensus 133 -DFS~a--L~~LReRGY--NILLAqP 153 (635)
-++.+ |.+++.+++ +|.|+..
T Consensus 109 H~laNi~lL~~~~~~~~~~~i~lid~ 134 (227)
T 3cq9_A 109 HLLANMWLVLDPVFRQWAPQIKLIDK 134 (227)
T ss_dssp HHHHHHSGGGSHHHHTTGGGEEEECS
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 13332 222234666 7776643
No 26
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=23.85 E-value=1.7e+02 Score=27.72 Aligned_cols=97 Identities=12% Similarity=0.061 Sum_probs=57.0
Q ss_pred ChhhhHHHHHHHHHhcCccCceEEEEEecCCC---CChhHHHHhhhcCCceee---ccCCCcchhhhHHHHHHHHhhhcC
Q 006692 46 DPHTIAQNISSALVKMNYCGPVSISAYGDTNR---IPASVQHALSSTGIALNH---VPAGVKDASDKKILVDMLFWAVDN 119 (635)
Q Consensus 46 da~~Va~NIrsAL~klGY~GpVTIrAYGDls~---ip~~vl~aLsSSGIsLih---VPaG~KDAADkkMLVDML~WAlDN 119 (635)
+....+..+-+.|.++|.+ +|.+- |.+... .-..++++|...|+++.. ++.+..+. ...+..+..
T Consensus 118 ~~~~~~~~~~~~l~~~g~~-~ia~i-~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~--~~~~~~l~~----- 188 (362)
T 3snr_A 118 PIPIMGKVLYEHMKKNNVK-TVGYI-GYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSV--AGQALKLVA----- 188 (362)
T ss_dssp CHHHHHHHHHHHHHHTTCC-EEEEE-EESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCC--HHHHHHHHH-----
T ss_pred ChHHHHHHHHHHHHhcCCC-EEEEE-ecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCCCH--HHHHHHHHh-----
Confidence 4445556666777776654 45433 443221 224567789999998764 33443332 222333322
Q ss_pred CCCceEEEEeCCcchHHHHHHHhhcCCeEEEe
Q 006692 120 PAPSNYLLISGDRDFSNALHQLRMRRYNILLA 151 (635)
Q Consensus 120 PpPANIMLISGDrDFS~aL~~LReRGYNILLA 151 (635)
..|.-|++.+.|.+...++..|++.|+++-++
T Consensus 189 ~~~dav~~~~~~~~a~~~~~~~~~~g~~~p~i 220 (362)
T 3snr_A 189 ANPDAILVGASGTAAALPQTTLRERGYNGLIY 220 (362)
T ss_dssp HCCSEEEEECCHHHHHHHHHHHHHTTCCSEEE
T ss_pred cCCCEEEEecCcchHHHHHHHHHHcCCCccEE
Confidence 23566666555788888999999999877544
No 27
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=23.60 E-value=3e+02 Score=28.76 Aligned_cols=29 Identities=24% Similarity=0.204 Sum_probs=17.2
Q ss_pred EEEEEecCCCCChhHHHHhhhcCCceeec
Q 006692 68 SISAYGDTNRIPASVQHALSSTGIALNHV 96 (635)
Q Consensus 68 TIrAYGDls~ip~~vl~aLsSSGIsLihV 96 (635)
.|+...+-..+..+.++.|...|+.-+++
T Consensus 141 eitie~~p~~l~~e~l~~L~~~G~~risl 169 (457)
T 1olt_A 141 EISIEVDPREIELDVLDHLRAEGFNRLSM 169 (457)
T ss_dssp EEEEEECSSSCCTHHHHHHHHTTCCEEEE
T ss_pred EEEEEEccCcCCHHHHHHHHHcCCCEEEE
Confidence 44445555556666777777777654444
No 28
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=23.51 E-value=2.3e+02 Score=24.56 Aligned_cols=18 Identities=11% Similarity=0.466 Sum_probs=15.3
Q ss_pred cchHHHHHHHhhcCCeEE
Q 006692 132 RDFSNALHQLRMRRYNIL 149 (635)
Q Consensus 132 rDFS~aL~~LReRGYNIL 149 (635)
.|.-.++..|+..||.|+
T Consensus 119 ~d~~~A~~~L~~~g~~v~ 136 (144)
T 2f06_A 119 SNMDKCIEVLKEKKVDLL 136 (144)
T ss_dssp SCHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHcCCEEe
Confidence 377888999999999985
No 29
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=21.17 E-value=4.9e+02 Score=24.51 Aligned_cols=42 Identities=7% Similarity=0.199 Sum_probs=31.3
Q ss_pred cchHHHHHHHhhcC-CeE-EEec-cCCCChhHHhhcCeEEEeccc
Q 006692 132 RDFSNALHQLRMRR-YNI-LLAQ-PHKASAPLVAAAKSVWLWTSL 173 (635)
Q Consensus 132 rDFS~aL~~LReRG-YNI-LLAq-P~~AS~~L~aaAd~vWlWeSL 173 (635)
.+|+..|..++..| -+| |+++ +..-++.+...|+..|....|
T Consensus 86 ~~fA~~l~~~~~~G~~~i~FvIGGa~Gl~~~v~~rA~~~lSlS~m 130 (167)
T 1to0_A 86 EELADTIDKLATYGKSKVTFVIGGSLGLSDTVMKRADEKLSFSKM 130 (167)
T ss_dssp HHHHHHHHHHHTTTCCEEEEEECCSSCCCHHHHHHCSEEEESCSS
T ss_pred HHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHhhCcEEEccCC
Confidence 37999999999887 456 4444 556788899989988776554
No 30
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=21.15 E-value=1.6e+02 Score=26.50 Aligned_cols=68 Identities=19% Similarity=0.326 Sum_probs=39.9
Q ss_pred hHHHHhhhcCCceeeccCCCcchhhhHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHH-hhcCCeEEEeccCC
Q 006692 81 SVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQL-RMRRYNILLAQPHK 155 (635)
Q Consensus 81 ~vl~aLsSSGIsLihVPaG~KDAADkkMLVDML~WAlDNPpPANIMLISGDrDFS~aL~~L-ReRGYNILLAqP~~ 155 (635)
.+..+....|..+.+|.. +| .+-..|-..|.. ..-..|++||.|..+...+-.| ...||.|+|.-...
T Consensus 17 kikkevenqgyqvrdvnd-----sd-elkkemkklaee-knfekiliisndkqllkemlelisklgykvflllqdq 85 (134)
T 2lci_A 17 KIKKEVENQGYQVRDVND-----SD-ELKKEMKKLAEE-KNFEKILIISNDKQLLKEMLELISKLGYKVFLLLQDQ 85 (134)
T ss_dssp HHHHHTTTTTCEEEEECS-----HH-HHHHHHHHHHHC-CSCCCEEEEESCHHHHHHHHHHHHHHTCCEEEEEECS
T ss_pred HHHHHHHccCeeeeecCc-----hH-HHHHHHHHHHhh-cCcceEEEEcCcHHHHHHHHHHHHHhCceeEEEeecC
Confidence 345556666666666632 11 233455555532 3446789999998766654444 44699998764333
Done!