Query 006692
Match_columns 635
No_of_seqs 139 out of 269
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 06:24:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006692.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006692hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kwga3 c.23.16.5 (A:394-590) 55.2 6.8 0.0005 35.2 5.3 38 26-63 3-46 (197)
2 d2d59a1 c.2.1.8 (A:4-142) Hypo 42.1 20 0.0015 30.3 6.0 102 52-162 10-115 (139)
3 d1o6da_ c.116.1.3 (A:) Hypothe 42.0 55 0.004 27.6 8.9 42 132-173 79-122 (147)
4 d2f06a1 d.58.18.11 (A:71-141) 37.4 16 0.0012 27.7 4.2 50 80-149 14-63 (71)
5 d1jeoa_ c.80.1.3 (A:) Probable 33.5 47 0.0034 28.3 7.1 90 65-171 38-130 (177)
6 d1ns5a_ c.116.1.3 (A:) Hypothe 27.3 76 0.0056 26.6 7.3 42 132-173 82-125 (153)
7 d1ztpa1 d.86.1.2 (A:17-250) Ba 22.3 21 0.0016 33.6 2.8 62 448-536 67-131 (234)
8 d1vima_ c.80.1.3 (A:) Hypothet 19.2 1.3E+02 0.0098 25.4 7.4 90 65-170 41-133 (192)
9 d1m3sa_ c.80.1.3 (A:) Hypothet 19.0 1.2E+02 0.0085 25.7 6.9 89 65-169 38-129 (186)
10 d1ig3a2 c.100.1.1 (A:10-178) T 18.4 2E+02 0.015 25.0 8.4 58 71-130 79-138 (169)
No 1
>d1kwga3 c.23.16.5 (A:394-590) A4 beta-galactosidase middle domain {Thermus thermophilus [TaxId: 274]}
Probab=55.24 E-value=6.8 Score=35.15 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=30.8
Q ss_pred ccCceEEEEEecC------CCCCCCCChhhhHHHHHHHHHhcCc
Q 006692 26 VTAKTSVWWDIEN------CQVPKNCDPHTIAQNISSALVKMNY 63 (635)
Q Consensus 26 A~AkTAVFWDIEN------CPVPsG~da~~Va~NIrsAL~klGY 63 (635)
+.|+|+|.+|+|+ -+...+++..+.....-++|+++|+
T Consensus 3 ~~A~VAil~D~es~Wa~~~~~~~~~~~y~~~~~~~Y~al~~~gv 46 (197)
T d1kwga3 3 AQAPVALVFDYEAAWIYEVQPQGAEWSYLGLVYLFYSALRRLGL 46 (197)
T ss_dssp CCCSEEEECCHHHHHHHHHCCSSTTCCHHHHHHHHHHHHHTTTC
T ss_pred CcCcEEEEEehhHhhhhhccCCCCCcCHHHHHHHHHHHHHHcCC
Confidence 4678999999998 4545677777788888899999887
No 2
>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=42.06 E-value=20 Score=30.32 Aligned_cols=102 Identities=15% Similarity=0.096 Sum_probs=63.6
Q ss_pred HHHHHHHHhcCccCceEEEEEec---CCCCChhHHHHhhhcCCceeeccCCCcchhhhHHHHHHHHhhhcCC-CCceEEE
Q 006692 52 QNISSALVKMNYCGPVSISAYGD---TNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNP-APSNYLL 127 (635)
Q Consensus 52 ~NIrsAL~klGY~GpVTIrAYGD---ls~ip~~vl~aLsSSGIsLihVPaG~KDAADkkMLVDML~WAlDNP-pPANIML 127 (635)
..|++.|.+ +-+|-.+|- ..+....+.+.|...|..++-|....+........-++ .+=| +++.++|
T Consensus 10 ~~i~~~L~~-----~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl----~dlp~~iD~v~i 80 (139)
T d2d59a1 10 EDIREILTR-----YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSV----LDIPDKIEVVDL 80 (139)
T ss_dssp HHHHHHHHH-----CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSG----GGCSSCCSEEEE
T ss_pred HHHHHHHhc-----CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccc----cccCccceEEEE
Confidence 457777865 336767773 34556668889999999887774322333322222221 1223 4666666
Q ss_pred EeCCcchHHHHHHHhhcCCeEEEeccCCCChhHHh
Q 006692 128 ISGDRDFSNALHQLRMRRYNILLAQPHKASAPLVA 162 (635)
Q Consensus 128 ISGDrDFS~aL~~LReRGYNILLAqP~~AS~~L~a 162 (635)
+.....-..++..+...|...+.+++...++.+.+
T Consensus 81 ~vp~~~~~~~~~e~~~~g~k~v~~~~G~~~ee~~~ 115 (139)
T d2d59a1 81 FVKPKLTMEYVEQAIKKGAKVVWFQYNTYNREASK 115 (139)
T ss_dssp CSCHHHHHHHHHHHHHHTCSEEEECTTCCCHHHHH
T ss_pred EeCHHHHHHHHHHHHHhCCCEEEEeccccCHHHHH
Confidence 65555555678888888999999998877665444
No 3
>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga maritima [TaxId: 2336]}
Probab=41.99 E-value=55 Score=27.59 Aligned_cols=42 Identities=21% Similarity=0.400 Sum_probs=31.9
Q ss_pred cchHHHHHHHhhcCCeEEEe-c-cCCCChhHHhhcCeEEEeccc
Q 006692 132 RDFSNALHQLRMRRYNILLA-Q-PHKASAPLVAAAKSVWLWTSL 173 (635)
Q Consensus 132 rDFS~aL~~LReRGYNILLA-q-P~~AS~~L~aaAd~vWlWeSL 173 (635)
.+|+..|..++..|.+|.++ + +..-++.+...|+..|....|
T Consensus 79 ~~fA~~l~~~~~~g~~i~FiIGGa~Gl~~~~~~~a~~~lSls~m 122 (147)
T d1o6da_ 79 EEFADFLKDLEMKGKDITILIGGPYGLNEEIFAKAHRVFSLSKM 122 (147)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCTTCCCGGGGGGCSEEEECCSS
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHhcCcEEeCCcC
Confidence 47999999998878777554 4 555678888889988876554
No 4
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=37.40 E-value=16 Score=27.74 Aligned_cols=50 Identities=18% Similarity=0.306 Sum_probs=35.6
Q ss_pred hhHHHHhhhcCCceeeccCCCcchhhhHHHHHHHHhhhcCCCCceEEEEeCCcchHHHHHHHhhcCCeEE
Q 006692 80 ASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDRDFSNALHQLRMRRYNIL 149 (635)
Q Consensus 80 ~~vl~aLsSSGIsLihVPaG~KDAADkkMLVDML~WAlDNPpPANIMLISGDrDFS~aL~~LReRGYNIL 149 (635)
..+.+.|...||.+.++-. .+...-+.+++...|. -.+...|+..||.++
T Consensus 14 ~~v~~~L~~~~InI~~~y~------------------~~~~~~~~~vl~vdd~--~~a~~~L~~~G~~vl 63 (71)
T d2f06a1 14 AKVLGFLSAEGVFIEYMYS------------------FANNNVANVVIRPSNM--DKCIEVLKEKKVDLL 63 (71)
T ss_dssp HHHHHHHHHTTCCEEEEEE------------------EEETTEEEEEEEESCH--HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHCCCCEEEEEE------------------EcCCCcEEEEEEECCH--HHHHHHHHHCCCEEE
Confidence 4577889999999988521 1112234577777655 588899999999987
No 5
>d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=33.50 E-value=47 Score=28.28 Aligned_cols=90 Identities=16% Similarity=0.087 Sum_probs=55.6
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCcchhhhHHHHHHHHhhhcCCCCceEEEEeCCc---chHHHHHHH
Q 006692 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDR---DFSNALHQL 141 (635)
Q Consensus 65 GpVTIrAYGDls~ip~~vl~aLsSSGIsLihVPaG~KDAADkkMLVDML~WAlDNPpPANIMLISGDr---DFS~aL~~L 141 (635)
.+|-+-+.|....+-..+...|...|+...++.... +..-.+-+-+++||... +...++..+
T Consensus 38 ~~I~~~G~G~S~~~a~~~~~~l~~lg~~~~~~~~~~---------------~~~~~~~Dl~I~iS~sG~t~~~i~~~~~a 102 (177)
T d1jeoa_ 38 KKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETT---------------TPSYEKDDLLILISGSGRTESVLTVAKKA 102 (177)
T ss_dssp SSEEEECCHHHHHHHHHHHHHHHHTTCCEEETTSTT---------------CCCCCTTCEEEEEESSSCCHHHHHHHHHH
T ss_pred CeEEEEEccHHHHHHHHHHHHHHhcCCccccccccc---------------ccccCCCCeEEEeccccchHHHHHHHHHH
Confidence 355555555543333445566888898877753211 00112345678888654 556677888
Q ss_pred hhcCCeEEEeccCCCChhHHhhcCeEEEec
Q 006692 142 RMRRYNILLAQPHKASAPLVAAAKSVWLWT 171 (635)
Q Consensus 142 ReRGYNILLAqP~~AS~~L~aaAd~vWlWe 171 (635)
|++|..|+++... .+ +|...|+..+.+.
T Consensus 103 k~~g~~vI~IT~~-~~-~l~~~aD~~l~~~ 130 (177)
T d1jeoa_ 103 KNINNNIIAIVCE-CG-NVVEFADLTIPLE 130 (177)
T ss_dssp HTTCSCEEEEESS-CC-GGGGGCSEEEECC
T ss_pred HHcCCceeEEecC-CC-cHHHhcCceEEEe
Confidence 8999999998853 33 3667788776553
No 6
>d1ns5a_ c.116.1.3 (A:) Hypothetical protein YbeA {Escherichia coli [TaxId: 562]}
Probab=27.32 E-value=76 Score=26.62 Aligned_cols=42 Identities=21% Similarity=0.369 Sum_probs=31.4
Q ss_pred cchHHHHHHHhhcCCeEEEe-c-cCCCChhHHhhcCeEEEeccc
Q 006692 132 RDFSNALHQLRMRRYNILLA-Q-PHKASAPLVAAAKSVWLWTSL 173 (635)
Q Consensus 132 rDFS~aL~~LReRGYNILLA-q-P~~AS~~L~aaAd~vWlWeSL 173 (635)
.+|+..|..++..|.+|.++ + +..-+..+...|+..|....|
T Consensus 82 ~~fA~~l~~~~~~g~~i~fiIGGa~G~~~~~~~~a~~~lsls~m 125 (153)
T d1ns5a_ 82 PQLAAELERWKLDGRDVSLLIGGPEGLSPACKAAAEQSWSLSAL 125 (153)
T ss_dssp HHHHHHHHHHHHHCSCEEEEECBTTBCCHHHHHHCSEEECCCSS
T ss_pred HHHHHHHHHHhhccCcEEEEEEcCCCCCHHHHHhhCcEEecccC
Confidence 36999999999888887544 4 455678888888888765543
No 7
>d1ztpa1 d.86.1.2 (A:17-250) Basophilic leukemia expressed protein BLES03 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.30 E-value=21 Score=33.58 Aligned_cols=62 Identities=26% Similarity=0.286 Sum_probs=46.5
Q ss_pred CCCCCCCccchhhHHHHHHHHHhhhhccccCCCCccccchhhcCCCCCCCchHHHHHHHHHHhhHHHHhhcCCcceeec-
Q 006692 448 TQGRLTPSEYVQGLIGVILLALNTLKIERVVPSEANITDCIRYGEPKHRNTDVRKALNCAIEQHMVIKRSLGALPLYVP- 526 (635)
Q Consensus 448 ~~g~~~~s~~~q~li~~il~al~~lk~eki~pte~ni~dcirygd~~~~~~dvkkale~ai~~~~vv~~~~g~~~l~~~- 526 (635)
.+|..+.++++++|.. |++.|+++- |-.-+....++|.++.-+ -|+--||+.
T Consensus 67 ~~~~~p~~~d~~~L~~----a~e~l~~~g-------------------Rk~t~~~l~~LA~~~~v~----sGKWmif~~p 119 (234)
T d1ztpa1 67 GQGYSPNSGDVQGLQA----AWEALQTSG-------------------RPITPGTLRQLAITHHVL----SGKWLMHLAP 119 (234)
T ss_dssp CTTCCCCCCCHHHHHH----HHHHHHHHC-------------------CCCCHHHHHHHHHHHTCC----CEEEEEEECS
T ss_pred CCCCCCCcchHHHHHH----HHHHHHhcc-------------------ccccHHHHHHHHHHcCce----eeeeEEecCc
Confidence 6788888899999984 788777732 556667788888887643 688888875
Q ss_pred --CCCccceeec
Q 006692 527 --KNEKLWNCEN 536 (635)
Q Consensus 527 --kne~lwkcvn 536 (635)
+=+.+|++|-
T Consensus 120 ~d~VD~~W~~VA 131 (234)
T d1ztpa1 120 GFKLDHAWAGIA 131 (234)
T ss_dssp SHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 3467888874
No 8
>d1vima_ c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=19.18 E-value=1.3e+02 Score=25.40 Aligned_cols=90 Identities=14% Similarity=0.127 Sum_probs=54.6
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCcchhhhHHHHHHHHhhhcCCCCceEEEEeCCc---chHHHHHHH
Q 006692 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDR---DFSNALHQL 141 (635)
Q Consensus 65 GpVTIrAYGDls~ip~~vl~aLsSSGIsLihVPaG~KDAADkkMLVDML~WAlDNPpPANIMLISGDr---DFS~aL~~L 141 (635)
++|-|.+.|....+-..+...|...|+....+.... +. .--+-+-+++||... +...++..+
T Consensus 41 ~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~~~~--~~-------------~i~~~Dl~i~iS~sG~t~~~i~~~~~a 105 (192)
T d1vima_ 41 RSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETV--TP-------------RITDQDVLVGISGSGETTSVVNISKKA 105 (192)
T ss_dssp SCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTT--CC-------------CCCTTCEEEEECSSSCCHHHHHHHHHH
T ss_pred CcEEEEecCcchhhhhhhhhhhcccccccccccccc--cc-------------cccccccceeccccccchhhHHHHHHH
Confidence 456666666543343445566777888766653210 00 001235677777553 466677888
Q ss_pred hhcCCeEEEeccCCCChhHHhhcCeEEEe
Q 006692 142 RMRRYNILLAQPHKASAPLVAAAKSVWLW 170 (635)
Q Consensus 142 ReRGYNILLAqP~~AS~~L~aaAd~vWlW 170 (635)
+++|..|+++..... .+|...|+.++.-
T Consensus 106 k~~g~~vI~IT~~~~-s~l~~~ad~~l~i 133 (192)
T d1vima_ 106 KDIGSKLVAVTGKRD-SSLAKMADVVMVV 133 (192)
T ss_dssp HHHTCEEEEEESCTT-SHHHHHCSEEEEC
T ss_pred Hhhcccceeeeeccc-cccccccceEEEe
Confidence 899999999875444 4577778877653
No 9
>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]}
Probab=18.97 E-value=1.2e+02 Score=25.67 Aligned_cols=89 Identities=10% Similarity=0.026 Sum_probs=54.1
Q ss_pred CceEEEEEecCCCCChhHHHHhhhcCCceeeccCCCcchhhhHHHHHHHHhhhcCCCCceEEEEeCCc---chHHHHHHH
Q 006692 65 GPVSISAYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPSNYLLISGDR---DFSNALHQL 141 (635)
Q Consensus 65 GpVTIrAYGDls~ip~~vl~aLsSSGIsLihVPaG~KDAADkkMLVDML~WAlDNPpPANIMLISGDr---DFS~aL~~L 141 (635)
++|-+.+.|....+-..+...|...|+....+.. +... .-.+-+.+++||... +-..++..+
T Consensus 38 ~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d-------------~~~~--~~~~~Dl~I~iS~sG~t~~~i~~~~~a 102 (186)
T d1m3sa_ 38 HQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGE-------------ILTP--PLAEGDLVIIGSGSGETKSLIHTAAKA 102 (186)
T ss_dssp SCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTS-------------TTCC--CCCTTCEEEEECSSSCCHHHHHHHHHH
T ss_pred CeEEEEECcHHHHHHHHHHHHHHhccCCCCcCCh-------------hhcc--cCCCCCEEEEecCccchhhhHHHHHHH
Confidence 4566655565433333455557788887665421 1110 012345677777543 456678888
Q ss_pred hhcCCeEEEeccCCCChhHHhhcCeEEE
Q 006692 142 RMRRYNILLAQPHKASAPLVAAAKSVWL 169 (635)
Q Consensus 142 ReRGYNILLAqP~~AS~~L~aaAd~vWl 169 (635)
+.+|-.|+++..... .+|...|+.++.
T Consensus 103 k~~g~~iI~IT~~~~-s~La~~ad~~i~ 129 (186)
T d1m3sa_ 103 KSLHGIVAALTINPE-SSIGKQADLIIR 129 (186)
T ss_dssp HHTTCEEEEEESCTT-SHHHHHCSEEEE
T ss_pred HHCCCCEEEEecCCC-chhhHhCCEEEE
Confidence 999999998875433 457888887665
No 10
>d1ig3a2 c.100.1.1 (A:10-178) Thiamin pyrophosphokinase, catalytic domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.39 E-value=2e+02 Score=24.99 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=40.3
Q ss_pred EEecCCCCChhHHHHhhhcCCceeeccCCCcchhhhHHHHHHHH-hh-hcCCCCceEEEEeC
Q 006692 71 AYGDTNRIPASVQHALSSTGIALNHVPAGVKDASDKKILVDMLF-WA-VDNPAPSNYLLISG 130 (635)
Q Consensus 71 AYGDls~ip~~vl~aLsSSGIsLihVPaG~KDAADkkMLVDML~-WA-lDNPpPANIMLISG 130 (635)
..||...+..++++.+.+.|+.+++.| .+|..|-...++.+. .. ..+-....|+++.+
T Consensus 79 IiGDfDSi~~~~~~~~~~~g~~ii~~~--dQD~TD~eKAl~~~~~~~~~~~~~~~~I~vlG~ 138 (169)
T d1ig3a2 79 VSGDFDSIRPEVKEYYTKKGCDLISTP--DQDHTDFTKCLQVLQRKIEEKELQVDVIVTLGG 138 (169)
T ss_dssp EEECTTSSCHHHHHHHHHTTCEEEECC--CTTSCHHHHHHHHHHHHHHHTTCCCSEEEEECC
T ss_pred EEecCCCCChHHHHHHHhcCCeEEECc--ccCcchHHHHHHHHHHhhhhhccCCCEEEEEeC
Confidence 579999999999999999999999976 477777665555432 11 12234455666554
Done!