Query         006693
Match_columns 635
No_of_seqs    146 out of 172
Neff          3.8 
Searched_HMMs 29240
Date          Mon Mar 25 06:26:11 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006693.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006693hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1wcn_A Transcription elongatio  92.2   0.039 1.3E-06   45.6   1.0   62  258-326     5-67  (70)
  2 2kz3_A Putative uncharacterize  86.1    0.58   2E-05   40.1   3.8   41  274-319    16-56  (83)
  3 2i1q_A DNA repair and recombin  77.0    0.96 3.3E-05   45.1   2.1   59  260-325     3-61  (322)
  4 3lda_A DNA repair protein RAD5  74.2     2.1 7.3E-05   45.3   4.0   62  260-326    81-142 (400)
  5 1b22_A DNA repair protein RAD5  70.7       1 3.4E-05   40.6   0.4   62  261-327    24-85  (114)
  6 3bqs_A Uncharacterized protein  69.3    0.61 2.1E-05   40.6  -1.3   79  262-379     6-86  (93)
  7 2z43_A DNA repair and recombin  67.1     1.2 4.1E-05   44.9   0.2   57  261-324    13-69  (324)
  8 3mab_A Uncharacterized protein  66.9    0.58   2E-05   40.8  -1.9   78  262-378     6-85  (93)
  9 1pzn_A RAD51, DNA repair and r  64.3     3.5 0.00012   42.4   2.9   59  261-326    36-94  (349)
 10 1v5w_A DMC1, meiotic recombina  62.6     1.7 5.8E-05   44.3   0.3   59  261-324    26-84  (343)
 11 4dez_A POL IV 1, DNA polymeras  51.8     3.5 0.00012   42.3   0.4   40  262-306   180-219 (356)
 12 3pzp_A DNA polymerase kappa; D  47.8      10 0.00034   41.6   3.2   51  262-322   340-390 (517)
 13 3osn_A DNA polymerase IOTA; ho  44.5     5.3 0.00018   42.4   0.5   51  262-321   236-286 (420)
 14 3im1_A Protein SNU246, PRE-mRN  42.4      15 0.00052   37.3   3.4   55  261-322   158-212 (328)
 15 2aq4_A DNA repair protein REV1  41.7      10 0.00036   40.2   2.1   52  262-321   243-296 (434)
 16 1t94_A Polymerase (DNA directe  40.8      15  0.0005   39.3   3.1   50  262-321   284-333 (459)
 17 1jx4_A DNA polymerase IV (fami  38.3      12  0.0004   38.4   1.8   54  262-324   180-233 (352)
 18 1inz_A EPS15-interacting porte  36.0     8.6  0.0003   35.9   0.4   15  614-632   123-137 (148)
 19 3bq0_A POL IV, DBH, DNA polyme  35.3      14 0.00048   37.8   1.9   54  262-324   181-234 (354)
 20 2q0z_X Protein Pro2281; SEC63,  35.1      32  0.0011   35.1   4.5   55  261-322   162-216 (339)
 21 4f4y_A POL IV, DNA polymerase   33.2     7.8 0.00027   40.2  -0.5   51  262-321   181-231 (362)
 22 1eyh_A Epsin; superhelix of he  29.4     8.8  0.0003   35.6  -0.8   15  614-632   105-119 (144)
 23 1xgw_A Epsin 4; ENTH, enthopro  27.7     9.9 0.00034   36.6  -0.8   15  614-632   135-149 (176)
 24 3gqc_A DNA repair protein REV1  27.7      15 0.00052   40.3   0.6   40  262-306   317-356 (504)
 25 1z3e_B DNA-directed RNA polyme  22.9      49  0.0017   27.5   2.7   25  276-303    22-46  (73)
 26 2va8_A SSO2462, SKI2-type heli  20.9      45  0.0015   36.7   2.7   49  263-321   660-708 (715)
 27 3k4g_A DNA-directed RNA polyme  20.7      56  0.0019   28.2   2.6   39  275-318    24-62  (86)

No 1  
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=92.20  E-value=0.039  Score=45.63  Aligned_cols=62  Identities=26%  Similarity=0.443  Sum_probs=51.9

Q ss_pred             CCCccceeeccccCchhhhhhhccCCccHHHHHHHHhcChHHHHHHHccCCChhhHHHHHHhhcc-cccC
Q 006693          258 LNDDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKT-CVLS  326 (635)
Q Consensus       258 L~DeVwRLekIgKdG~~hkrL~~~~I~TV~dFLrl~~~D~~kLR~iLg~gmS~k~We~~v~HAkt-Cvl~  326 (635)
                      +.|++-.|++|+..-+  ++|.++||+||+|+..   .+...|-.|.  |+|...=+.++.-|+. |-+.
T Consensus         5 ~~~~l~~L~Gi~~~~~--~kL~e~Gi~TvedlA~---~~~~eL~~i~--gise~kA~~ii~aAr~~~w~~   67 (70)
T 1wcn_A            5 PADDLLNLEGVDRDLA--FKLAARGVCTLEDLAE---QGIDDLADIE--GLTDEKAGALIMAARNICWFG   67 (70)
T ss_dssp             CCHHHHSSTTCCHHHH--HHHHTTTCCSHHHHHT---SCHHHHHTSS--SCCHHHHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHcCCCCHHHH--HHHHHcCCCcHHHHHc---CCHHHHHHcc--CCCHHHHHHHHHHHHHccCcc
Confidence            5677888998887655  9999999999998765   4778898887  8999999999999998 7553


No 2  
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=86.15  E-value=0.58  Score=40.07  Aligned_cols=41  Identities=24%  Similarity=0.234  Sum_probs=31.6

Q ss_pred             hhhhhhccCCccHHHHHHHHhcChHHHHHHHccCCChhhHHHHHHh
Q 006693          274 FHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDH  319 (635)
Q Consensus       274 ~hkrL~~~~I~TV~dFLrl~~~D~~kLR~iLg~gmS~k~We~~v~H  319 (635)
                      .-++|.+++|.||+||+.   .|+.+|.+++  |+|-+.=-.+..|
T Consensus        16 ~~~~L~~~~I~Tv~Dfl~---~d~~eL~~~~--~ls~~~v~~l~r~   56 (83)
T 2kz3_A           16 MIQLLRSHRIKTVVDLVS---ADLEEVAQKC--GLSYKALVALRRV   56 (83)
T ss_dssp             HHHHHHHTTCCCHHHHTT---SCHHHHHHHH--TCCHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHh---CCHHHHHHHh--CCCHHHHHHHHHH
Confidence            358899999999999975   7999999998  5665555444443


No 3  
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=76.97  E-value=0.96  Score=45.09  Aligned_cols=59  Identities=22%  Similarity=0.256  Sum_probs=46.1

Q ss_pred             CccceeeccccCchhhhhhhccCCccHHHHHHHHhcChHHHHHHHccCCChhhHHHHHHhhccccc
Q 006693          260 DDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVL  325 (635)
Q Consensus       260 DeVwRLekIgKdG~~hkrL~~~~I~TV~dFLrl~~~D~~kLR~iLg~gmS~k~We~~v~HAktCvl  325 (635)
                      +++..|++|+.  .+-++|.++||+||+||+.   .++..|-++.  |+|.+.=+.+++.|+.+..
T Consensus         3 ~~~~~l~gi~~--~~~~kL~~~gi~t~~~~~~---~~~~~L~~~~--gis~~~a~~~i~~a~~~~~   61 (322)
T 2i1q_A            3 DNLTDLPGVGP--STAEKLVEAGYIDFMKIAT---ATVGELTDIE--GISEKAAAKMIMGARDLCD   61 (322)
T ss_dssp             --CTTSTTCCH--HHHHHHHHHTCCSHHHHHT---CCHHHHHTST--TCCHHHHHHHHHHHHHHTT
T ss_pred             ccHhhcCCCCH--HHHHHHHHcCCCcHHHHHh---CCHHHHHHhh--CcCHHHHHHHHHHHHHhhh
Confidence            46777886665  4669999999999999985   4677788776  7888888889999988753


No 4  
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=74.18  E-value=2.1  Score=45.27  Aligned_cols=62  Identities=23%  Similarity=0.225  Sum_probs=51.5

Q ss_pred             CccceeeccccCchhhhhhhccCCccHHHHHHHHhcChHHHHHHHccCCChhhHHHHHHhhcccccC
Q 006693          260 DDVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLS  326 (635)
Q Consensus       260 DeVwRLekIgKdG~~hkrL~~~~I~TV~dFLrl~~~D~~kLR~iLg~gmS~k~We~~v~HAktCvl~  326 (635)
                      .+|-+|+..|-.-..-++|.++||+||++|+.   .++..|.++.  |+|...=+.+++.|++++..
T Consensus        81 ~~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~---~~~~~L~~~~--gis~~~~~~i~~~a~~~~~~  142 (400)
T 3lda_A           81 VPIEKLQVNGITMADVKKLRESGLHTAEAVAY---APRKDLLEIK--GISEAKADKLLNEAARLVPM  142 (400)
T ss_dssp             CBGGGGCCTTCCHHHHHHHHHTTCCBHHHHHH---SCHHHHHTST--TCCHHHHHHHHHHHHHHSCC
T ss_pred             cCHHHHHhCCCCHHHHHHHHHcCCCcHHHHHh---CCHHHHHHHh--CCCHHHHHHHHHHHHHhccc
Confidence            46888988666666779999999999999975   5788999997  78998888899999887644


No 5  
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=70.72  E-value=1  Score=40.55  Aligned_cols=62  Identities=29%  Similarity=0.380  Sum_probs=51.0

Q ss_pred             ccceeeccccCchhhhhhhccCCccHHHHHHHHhcChHHHHHHHccCCChhhHHHHHHhhcccccCC
Q 006693          261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLSG  327 (635)
Q Consensus       261 eVwRLekIgKdG~~hkrL~~~~I~TV~dFLrl~~~D~~kLR~iLg~gmS~k~We~~v~HAktCvl~~  327 (635)
                      +|.+|+..|-.-+.-++|.++|++||++.   ...++..|.+|-  |+|...=+.+++=|+.++..+
T Consensus        24 ~I~~L~~~GIg~~~i~kL~eAG~~Tve~v---a~a~~~eL~~i~--GIse~ka~kIi~aA~kl~~~g   85 (114)
T 1b22_A           24 PISRLEQCGINANDVKKLEEAGFHTVEAV---AYAPKKELINIK--GISEAKADKILAEAAKLVPMG   85 (114)
T ss_dssp             CHHHHHHTTCSHHHHHHHHTTCCSSGGGB---TSSBHHHHHTTT--TCSTTHHHHHHHHHHHHSCCC
T ss_pred             cHHHHHhcCCCHHHHHHHHHcCcCcHHHH---HhCCHHHHHHcc--CCCHHHHHHHHHHHHHHcccC
Confidence            68999966555567899999999999976   455788899986  789999999999999887544


No 6  
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=69.25  E-value=0.61  Score=40.60  Aligned_cols=79  Identities=23%  Similarity=0.397  Sum_probs=52.5

Q ss_pred             cceeeccccCchhhhhhhccCCccHHHHHHHHhcChHHHHHHHccCCChhhHHHHHHhhcccccCCceEEEecCCCcceE
Q 006693          262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDSRNVG  341 (635)
Q Consensus       262 VwRLekIgKdG~~hkrL~~~~I~TV~dFLrl~~~D~~kLR~iLg~gmS~k~We~~v~HAktCvl~~kly~y~~~~~~nvg  341 (635)
                      +-.|-.||+.  .-+.|.+.||+||+||..+   ++            .++|..+.+.      +           ..  
T Consensus         6 L~~LPNiG~~--~e~~L~~vGI~s~e~L~~~---Ga------------~~ay~rL~~~------~-----------~~--   49 (93)
T 3bqs_A            6 LSELPNIGKV--LEQDLIKAGIKTPVELKDV---GS------------KEAFLRIWEN------D-----------SS--   49 (93)
T ss_dssp             GGGSTTCCHH--HHHHHHHTTCCSHHHHHHH---HH------------HHHHHHHHTT------C-----------TT--
T ss_pred             hhcCCCCCHH--HHHHHHHcCCCCHHHHHhC---CH------------HHHHHHHHHH------C-----------CC--
Confidence            4455666664  4588999999999998764   22            2333333322      0           11  


Q ss_pred             EEEccccceeeeeeCCeeecCCCCChHhh--HHHHHHhcc
Q 006693          342 VVFNNIYELNGLISGEQYFPADALPESQK--VKKAYDNWN  379 (635)
Q Consensus       342 l~FN~i~~lvG~~~~g~y~s~d~L~~~Qk--vk~AY~n~~  379 (635)
                      +.++.+|.|+|++-|   +....|+...|  .++.|++++
T Consensus        50 ~c~~~L~aL~gAi~G---~~w~~l~~~~K~~L~~~~~~~~   86 (93)
T 3bqs_A           50 VCMSELYALEGAVQG---IRWHGLDEAKKIELKKFHQSLE   86 (93)
T ss_dssp             CCHHHHHHHHHHHHT---SCGGGSCHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHcC---CCHHHCCHHHHHHHHHHHHHhh
Confidence            223677889999877   66778888888  778888765


No 7  
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=67.07  E-value=1.2  Score=44.86  Aligned_cols=57  Identities=21%  Similarity=0.302  Sum_probs=0.0

Q ss_pred             ccceeeccccCchhhhhhhccCCccHHHHHHHHhcChHHHHHHHccCCChhhHHHHHHhhcccc
Q 006693          261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCV  324 (635)
Q Consensus       261 eVwRLekIgKdG~~hkrL~~~~I~TV~dFLrl~~~D~~kLR~iLg~gmS~k~We~~v~HAktCv  324 (635)
                      ++.+|.+|+..  .-++|.++||+||++|+..   ++..|-++.  |+|...=+.+++.|..+.
T Consensus        13 ~~~~l~g~~~~--~~~~l~~~g~~t~~~~~~~---~~~~l~~~~--g~s~~~~~~~~~~~~~~~   69 (324)
T 2z43_A           13 TINDLPGISQT--VINKLIEAGYSSLETLAVA---SPQDLSVAA--GIPLSTAQKIIKEARDAL   69 (324)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             cHHHcCCCCHH--HHHHHHHcCCCcHHHHHcC---CHHHHHHhh--CCCHHHHHHHHHHHHhhc
Confidence            68888877765  5599999999999999854   455677776  677777777777777664


No 8  
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=66.86  E-value=0.58  Score=40.82  Aligned_cols=78  Identities=23%  Similarity=0.395  Sum_probs=51.7

Q ss_pred             cceeeccccCchhhhhhhccCCccHHHHHHHHhcChHHHHHHHccCCChhhHHHHHHhhcccccCCceEEEecCCCcceE
Q 006693          262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLSGKLYVYYPEDSRNVG  341 (635)
Q Consensus       262 VwRLekIgKdG~~hkrL~~~~I~TV~dFLrl~~~D~~kLR~iLg~gmS~k~We~~v~HAktCvl~~kly~y~~~~~~nvg  341 (635)
                      +-.|-+||+.  .-+.|.+.||+||+||..+   ++            .+.|..+.++-                 .+  
T Consensus         6 L~dLPNig~~--~e~~L~~~GI~t~~~Lr~~---Ga------------~~ay~rLk~~~-----------------~~--   49 (93)
T 3mab_A            6 LSELPNIGKV--LEQDLIKAGIKTPVELKDV---GS------------KEAFLRIWEND-----------------SS--   49 (93)
T ss_dssp             GGGSTTCCHH--HHHHHHHTTCCSHHHHHHH---CH------------HHHHHHHHHHC-----------------TT--
T ss_pred             HhhCCCCCHH--HHHHHHHcCCCCHHHHHhC---CH------------HHHHHHHHHhC-----------------CC--
Confidence            3445666664  4488999999999998763   22            33444443320                 01  


Q ss_pred             EEEccccceeeeeeCCeeecCCCCChHhh--HHHHHHhc
Q 006693          342 VVFNNIYELNGLISGEQYFPADALPESQK--VKKAYDNW  378 (635)
Q Consensus       342 l~FN~i~~lvG~~~~g~y~s~d~L~~~Qk--vk~AY~n~  378 (635)
                      +-+|.+|.|+|++-|   +....|+...|  .++-|+.+
T Consensus        50 ~~~~~L~aL~gAi~G---~~w~~l~~~~K~~L~~~~~~l   85 (93)
T 3mab_A           50 VCMSELYALEGAVQG---IRWHGLDEAKKIELKKFHQSL   85 (93)
T ss_dssp             CCHHHHHHHHHHHHT---SCGGGSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHcC---CcHHHCCHHHHHHHHHHHHHh
Confidence            226788999999988   56678888888  66777664


No 9  
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=64.28  E-value=3.5  Score=42.37  Aligned_cols=59  Identities=19%  Similarity=0.293  Sum_probs=47.1

Q ss_pred             ccceeeccccCchhhhhhhccCCccHHHHHHHHhcChHHHHHHHccCCChhhHHHHHHhhcccccC
Q 006693          261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCVLS  326 (635)
Q Consensus       261 eVwRLekIgKdG~~hkrL~~~~I~TV~dFLrl~~~D~~kLR~iLg~gmS~k~We~~v~HAktCvl~  326 (635)
                      ++.+|.+|+.  ...++|.++||+||++++.   .++..|-++.  |+|...=+.+++.|.++...
T Consensus        36 ~l~~l~Gi~~--~~~~kL~~ag~~t~~~~~~---~~~~~L~~~~--~~s~~~~~~~l~~~~~~~~~   94 (349)
T 1pzn_A           36 SIEDLPGVGP--ATAEKLREAGYDTLEAIAV---ASPIELKEVA--GISEGTALKIIQAARKAANL   94 (349)
T ss_dssp             CSSCCTTCCH--HHHHHHHTTTCCSHHHHHT---CCHHHHHHHH--CCCHHHHHHHHHHHHHHCST
T ss_pred             cHHHcCCCCH--HHHHHHHHcCCCcHHHHHh---CCHHHHHhhc--CCCHHHHHHHHHHHhhhccc
Confidence            4677765554  6779999999999999875   5788899987  67888888889999877644


No 10 
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=62.58  E-value=1.7  Score=44.34  Aligned_cols=59  Identities=20%  Similarity=0.293  Sum_probs=0.0

Q ss_pred             ccceeeccccCchhhhhhhccCCccHHHHHHHHhcChHHHHHHHccCCChhhHHHHHHhhcccc
Q 006693          261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCV  324 (635)
Q Consensus       261 eVwRLekIgKdG~~hkrL~~~~I~TV~dFLrl~~~D~~kLR~iLg~gmS~k~We~~v~HAktCv  324 (635)
                      ++++|+.-|-.=..-++|.++||+||++|+.   .++.+|.++.  |+|...=+.+++.|..+.
T Consensus        26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~---~~~~~l~~~~--~is~~~~~~~~~~a~~~~   84 (343)
T 1v5w_A           26 DIDLLQKHGINVADIKKLKSVGICTIKGIQM---TTRRALCNVK--GLSEAKVDKIKEAANKLI   84 (343)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHh---CCHHHHHHhh--CCCHHHHHHHHHHHHhhc
Confidence            6889995444455669999999999999985   4566677775  567776677777777654


No 11 
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=51.75  E-value=3.5  Score=42.31  Aligned_cols=40  Identities=33%  Similarity=0.443  Sum_probs=31.8

Q ss_pred             cceeeccccCchhhhhhhccCCccHHHHHHHHhcChHHHHHHHcc
Q 006693          262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGS  306 (635)
Q Consensus       262 VwRLekIgKdG~~hkrL~~~~I~TV~dFLrl~~~D~~kLR~iLg~  306 (635)
                      |-.|-+||+.  .-++|...||+|++|+.   ..++..|++.||.
T Consensus       180 v~~l~GiG~~--~~~~L~~~GI~Ti~dL~---~~~~~~L~~~fG~  219 (356)
T 4dez_A          180 PDALWGVGPK--TTKKLAAMGITTVADLA---VTDPSVLTTAFGP  219 (356)
T ss_dssp             GGGSTTCCHH--HHHHHHHTTCCSHHHHH---TSCHHHHHHHHCH
T ss_pred             HHHHcCCchh--HHHHHHHcCCCeecccc---cCCHHHHHHHhCC
Confidence            4445577775  44899999999999986   4689999999975


No 12 
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=47.82  E-value=10  Score=41.58  Aligned_cols=51  Identities=20%  Similarity=0.364  Sum_probs=38.5

Q ss_pred             cceeeccccCchhhhhhhccCCccHHHHHHHHhcChHHHHHHHccCCChhhHHHHHHhhcc
Q 006693          262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKT  322 (635)
Q Consensus       262 VwRLekIgKdG~~hkrL~~~~I~TV~dFLrl~~~D~~kLR~iLg~gmS~k~We~~v~HAkt  322 (635)
                      |-+|-+||+.+  -++|...||+|++|+.++    +..|+..||    ...|..+.++|.-
T Consensus       340 V~kl~GIG~~t--~~~L~~lGI~TigDL~~~----~~~L~~~fG----~~~~~~l~~~a~G  390 (517)
T 3pzp_A          340 IRKVSGIGKVT--EKMLKALGIITCTELYQQ----RALLSLLFS----ETSWHYFLHISLG  390 (517)
T ss_dssp             GGGSTTCCHHH--HHHHHHTTCCBHHHHHHH----HHHHHHHSC----HHHHHHHHHHHTT
T ss_pred             hhhhccccHHH--HHHHHHhCCCcHHHHHhh----HHHHHHHhC----hHHHHHHHHHHcC
Confidence            55566788755  499999999999999885    357888875    3568777777653


No 13 
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=44.49  E-value=5.3  Score=42.45  Aligned_cols=51  Identities=25%  Similarity=0.272  Sum_probs=37.7

Q ss_pred             cceeeccccCchhhhhhhccCCccHHHHHHHHhcChHHHHHHHccCCChhhHHHHHHhhc
Q 006693          262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAK  321 (635)
Q Consensus       262 VwRLekIgKdG~~hkrL~~~~I~TV~dFLrl~~~D~~kLR~iLg~gmS~k~We~~v~HAk  321 (635)
                      |-+|-+||+  ..-++|...||+|++|+.+   .++..|++.||.    +....+.+||.
T Consensus       236 v~~l~GIG~--~t~~~L~~lGI~TigdLa~---~~~~~L~~~fG~----~~g~~L~~~a~  286 (420)
T 3osn_A          236 IKEIPGIGY--KTAKCLEALGINSVRDLQT---FSPKILEKELGI----SVAQRIQKLSF  286 (420)
T ss_dssp             GGGSTTCCH--HHHHHHHHTTCCSHHHHHH---SCHHHHHHHHHH----HHHHHHHHHHT
T ss_pred             HHHccCCCH--HHHHHHHHhCCCcHHHHhh---CCHHHHHHHhCc----hHHHHHHHHhc
Confidence            444445665  4569999999999999865   588999999974    34566667775


No 14 
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=42.38  E-value=15  Score=37.28  Aligned_cols=55  Identities=7%  Similarity=0.163  Sum_probs=43.9

Q ss_pred             ccceeeccccCchhhhhhhccCCccHHHHHHHHhcChHHHHHHHccCCChhhHHHHHHhhcc
Q 006693          261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKT  322 (635)
Q Consensus       261 eVwRLekIgKdG~~hkrL~~~~I~TV~dFLrl~~~D~~kLR~iLg~gmS~k~We~~v~HAkt  322 (635)
                      +..-|.+|+.+-+  ++|.++||.|++||..   .+++++.++|  +++++.-+.+.+-|..
T Consensus       158 pL~Qlp~i~~~~~--~~l~~~~i~s~~~l~~---~~~~e~~~ll--~~~~~~~~~v~~~~~~  212 (328)
T 3im1_A          158 PLRQIPHFNNKIL--EKCKEINVETVYDIMA---LEDEERDEIL--TLTDSQLAQVAAFVNN  212 (328)
T ss_dssp             GGGGSTTCCHHHH--HHHHHTTCCSHHHHHH---SCHHHHHHHC--CCCHHHHHHHHHHHHH
T ss_pred             ceeCCCCCCHHHH--HHHHhCCCCCHHHHhc---CCHHHHHhHh--CCCHHHHHHHHHHHHh
Confidence            4667888887644  7799999999999865   5899999998  6888888887776653


No 15 
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=41.69  E-value=10  Score=40.18  Aligned_cols=52  Identities=19%  Similarity=0.197  Sum_probs=38.5

Q ss_pred             cceeeccccCchhhhhhhc--cCCccHHHHHHHHhcChHHHHHHHccCCChhhHHHHHHhhc
Q 006693          262 VWRLEKIGKDGSFHKRLNN--AGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAK  321 (635)
Q Consensus       262 VwRLekIgKdG~~hkrL~~--~~I~TV~dFLrl~~~D~~kLR~iLg~gmS~k~We~~v~HAk  321 (635)
                      |-.|-+||+  ..-++|..  .||+|++|+.++.  ++..|++.||..    ....+..||+
T Consensus       243 v~~l~GiG~--~~~~~L~~~~~GI~ti~dL~~~~--~~~~L~~~fG~~----~g~~l~~~a~  296 (434)
T 2aq4_A          243 LDDLPGVGH--STLSRLESTFDSPHSLNDLRKRY--TLDALKASVGSK----LGMKIHLALQ  296 (434)
T ss_dssp             GGGSTTCCH--HHHHHHHHHTTCCCSHHHHHHHC--CHHHHHHHHCSS----HHHHHHHHTT
T ss_pred             cccccCcCH--HHHHHHHHhcCCceEHHHHHhcC--CHHHHHHHhCHH----HHHHHHHHhc
Confidence            445556665  56689999  8999999999874  788999999752    3445555665


No 16 
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=40.81  E-value=15  Score=39.27  Aligned_cols=50  Identities=20%  Similarity=0.371  Sum_probs=38.0

Q ss_pred             cceeeccccCchhhhhhhccCCccHHHHHHHHhcChHHHHHHHccCCChhhHHHHHHhhc
Q 006693          262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAK  321 (635)
Q Consensus       262 VwRLekIgKdG~~hkrL~~~~I~TV~dFLrl~~~D~~kLR~iLg~gmS~k~We~~v~HAk  321 (635)
                      |-+|-+||+.  ..++|...||+|++|+.++    +..|++.||    .+.|..+..+|+
T Consensus       284 v~~l~GiG~~--~~~~L~~lGI~T~gdL~~~----~~~L~~~fG----~~~~~~l~~~a~  333 (459)
T 1t94_A          284 IRKVSGIGKV--TEKMLKALGIITCTELYQQ----RALLSLLFS----ETSWHYFLHISL  333 (459)
T ss_dssp             GGGCTTSCHH--HHHHHHHTTCCBHHHHHHT----HHHHHHHSC----HHHHHHHHHHHT
T ss_pred             HHhcCCcCHH--HHHHHHHcCCCcHHHHHhh----HHHHHHHhC----hHhHHHHHHHHc
Confidence            6677778865  4589999999999998874    356999886    345666777776


No 17 
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=38.30  E-value=12  Score=38.39  Aligned_cols=54  Identities=22%  Similarity=0.297  Sum_probs=40.5

Q ss_pred             cceeeccccCchhhhhhhccCCccHHHHHHHHhcChHHHHHHHccCCChhhHHHHHHhhcccc
Q 006693          262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCV  324 (635)
Q Consensus       262 VwRLekIgKdG~~hkrL~~~~I~TV~dFLrl~~~D~~kLR~iLg~gmS~k~We~~v~HAktCv  324 (635)
                      |..|-+||+  ...++|...||+|++|+.+   .++..|++.||.    .....+.+||+--+
T Consensus       180 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~G~d  233 (352)
T 1jx4_A          180 IADVPGIGN--ITAEKLKKLGINKLVDTLS---IEFDKLKGMIGE----AKAKYLISLARDEY  233 (352)
T ss_dssp             GGGSTTCCH--HHHHHHHTTTCCBGGGGGS---SCHHHHHHHHCH----HHHHHHHHHHTTCC
T ss_pred             CCcccccCH--HHHHHHHHcCCchHHHHHC---CCHHHHHHhcCh----hHHHHHHHHhCCCC
Confidence            566667775  4669999999999999874   688999999974    22566677776433


No 18 
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=35.96  E-value=8.6  Score=35.90  Aligned_cols=15  Identities=47%  Similarity=0.623  Sum_probs=14.0

Q ss_pred             hhhhhhhhhHHhhhhcccc
Q 006693          614 WGFFIRKKAAERRAQIVEL  632 (635)
Q Consensus       614 WGiFiRKKAAERRAQlVEL  632 (635)
                      ||+.||+||.    +|++|
T Consensus       123 ~G~nVR~kAk----~l~~L  137 (148)
T 1inz_A          123 QGVNVREKAK----QLVAL  137 (148)
T ss_dssp             CCHHHHHHHH----HHHHH
T ss_pred             chHHHHHHHH----HHHHH
Confidence            8999999999    88888


No 19 
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=35.34  E-value=14  Score=37.81  Aligned_cols=54  Identities=28%  Similarity=0.368  Sum_probs=40.2

Q ss_pred             cceeeccccCchhhhhhhccCCccHHHHHHHHhcChHHHHHHHccCCChhhHHHHHHhhcccc
Q 006693          262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKTCV  324 (635)
Q Consensus       262 VwRLekIgKdG~~hkrL~~~~I~TV~dFLrl~~~D~~kLR~iLg~gmS~k~We~~v~HAktCv  324 (635)
                      |..|-+||+  ...++|...||+|++|+.+   .++..|++.||.    .....+.+||+--+
T Consensus       181 v~~l~GiG~--~~~~~L~~~Gi~t~~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~G~d  234 (354)
T 3bq0_A          181 IDEIPGIGS--VLARRLNELGIQKLRDILS---KNYNELEKITGK----AKALYLLKLAQNKY  234 (354)
T ss_dssp             STTSTTCCH--HHHHHHTTTTCCBGGGGGG---SCHHHHHHHHCH----HHHHHHHHHHTTCC
T ss_pred             cccccCcCH--HHHHHHHHcCCccHHHHhc---CCHHHHHHHHCH----HHHHHHHHHhCCCC
Confidence            445556665  5679999999999999875   688999999974    22666777776433


No 20 
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=35.13  E-value=32  Score=35.12  Aligned_cols=55  Identities=15%  Similarity=0.242  Sum_probs=43.5

Q ss_pred             ccceeeccccCchhhhhhhccCCccHHHHHHHHhcChHHHHHHHccCCChhhHHHHHHhhcc
Q 006693          261 DVWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAKT  322 (635)
Q Consensus       261 eVwRLekIgKdG~~hkrL~~~~I~TV~dFLrl~~~D~~kLR~iLg~gmS~k~We~~v~HAkt  322 (635)
                      +..-|.+|+.+  .-++|.++||.|++||..   .++.++..+||  +++..-+.+.+-+..
T Consensus       162 pL~Qlp~i~~~--~~~~l~~~~i~s~~~l~~---~~~~e~~~ll~--l~~~~~~~i~~~~~~  216 (339)
T 2q0z_X          162 YLKQLPHFTSE--HIKRCTDKGVESVFDIME---MEDEERNALLQ--LTDSQIADVARFCNR  216 (339)
T ss_dssp             GGGGSTTCCHH--HHHHHHHTTCCSHHHHHH---SCHHHHHHHHC--CCHHHHHHHHHHHTT
T ss_pred             ceecCCCCCHH--HHHHHHhcCCCCHHHHHh---CCHHHHHHHHC--CCHHHHHHHHHHHHh
Confidence            56788888875  458899999999999875   78999999994  888777777665543


No 21 
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=33.23  E-value=7.8  Score=40.23  Aligned_cols=51  Identities=29%  Similarity=0.399  Sum_probs=36.8

Q ss_pred             cceeeccccCchhhhhhhccCCccHHHHHHHHhcChHHHHHHHccCCChhhHHHHHHhhc
Q 006693          262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAK  321 (635)
Q Consensus       262 VwRLekIgKdG~~hkrL~~~~I~TV~dFLrl~~~D~~kLR~iLg~gmS~k~We~~v~HAk  321 (635)
                      |..|-+||+.  .-++|...||+|++|+.+   .++..|++.||.    +....+..+|+
T Consensus       181 v~~l~GiG~~--~~~~L~~~GI~Ti~dL~~---~~~~~L~~~fG~----~~g~~l~~~a~  231 (362)
T 4f4y_A          181 IDEIPGIGSV--LARRLNELGIQKLRDILS---KNYNELEKITGK----AKALYLLKLAQ  231 (362)
T ss_dssp             STTSTTCCST--THHHHHHTTCCBGGGGTT---SCHHHHHHHHCH----HHHHHHHHHHT
T ss_pred             hhhccCCCHH--HHHHHHHcCCChHHHHhc---CCHHHHHHHhCh----HHHHHHHHHhc
Confidence            3344466765  458999999999999764   688999999973    34455555654


No 22 
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=29.41  E-value=8.8  Score=35.64  Aligned_cols=15  Identities=47%  Similarity=0.623  Sum_probs=13.7

Q ss_pred             hhhhhhhhhHHhhhhcccc
Q 006693          614 WGFFIRKKAAERRAQIVEL  632 (635)
Q Consensus       614 WGiFiRKKAAERRAQlVEL  632 (635)
                      ||+.||+||.    +|++|
T Consensus       105 ~G~~VR~kak----~l~~L  119 (144)
T 1eyh_A          105 QGVNVREKAK----QLVAL  119 (144)
T ss_dssp             CHHHHHHHHH----HHHHH
T ss_pred             hHHHHHHHHH----HHHHH
Confidence            8999999999    78887


No 23 
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=27.70  E-value=9.9  Score=36.58  Aligned_cols=15  Identities=40%  Similarity=0.632  Sum_probs=13.9

Q ss_pred             hhhhhhhhhHHhhhhcccc
Q 006693          614 WGFFIRKKAAERRAQIVEL  632 (635)
Q Consensus       614 WGiFiRKKAAERRAQlVEL  632 (635)
                      ||+.||+||.    +|++|
T Consensus       135 ~G~~VR~kAk----~i~~L  149 (176)
T 1xgw_A          135 QGINIRQKVK----ELVEF  149 (176)
T ss_dssp             CHHHHHHHHH----HHHHH
T ss_pred             hHHHHHHHHH----HHHHH
Confidence            9999999999    88887


No 24 
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=27.70  E-value=15  Score=40.27  Aligned_cols=40  Identities=28%  Similarity=0.385  Sum_probs=31.8

Q ss_pred             cceeeccccCchhhhhhhccCCccHHHHHHHHhcChHHHHHHHcc
Q 006693          262 VWRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGS  306 (635)
Q Consensus       262 VwRLekIgKdG~~hkrL~~~~I~TV~dFLrl~~~D~~kLR~iLg~  306 (635)
                      |-.|-+||+  ..-++|...||+|++|+.   ..++..|++.||.
T Consensus       317 V~~l~GIG~--~t~~kL~~lGI~TigDLa---~~~~~~L~~~fG~  356 (504)
T 3gqc_A          317 VTNLPGVGH--SMESKLASLGIKTCGDLQ---YMTMAKLQKEFGP  356 (504)
T ss_dssp             GGGSTTCCH--HHHHHHHHTTCCBHHHHT---TSCHHHHHHHHCH
T ss_pred             hhHhhCcCH--HHHHHHHHcCCCcHHHHH---hccHHHHHHhhCh
Confidence            445556666  455899999999999986   4688999999975


No 25 
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=22.87  E-value=49  Score=27.48  Aligned_cols=25  Identities=20%  Similarity=0.437  Sum_probs=19.2

Q ss_pred             hhhhccCCccHHHHHHHHhcChHHHHHH
Q 006693          276 KRLNNAGIFSVEDFLRLVVRDPQKLRSI  303 (635)
Q Consensus       276 krL~~~~I~TV~dFLrl~~~D~~kLR~i  303 (635)
                      .-|+.+||+||+|+++   +.++.|.+|
T Consensus        22 NcLkragI~Tv~dL~~---~s~~dLlki   46 (73)
T 1z3e_B           22 NCLKRAGINTVQELAN---KTEEDMMKV   46 (73)
T ss_dssp             HHHHHTTCCBHHHHHT---SCHHHHHTS
T ss_pred             HHHHHcCCCcHHHHHc---CCHHHHHHc
Confidence            4678899999999877   455666666


No 26 
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=20.92  E-value=45  Score=36.74  Aligned_cols=49  Identities=27%  Similarity=0.512  Sum_probs=38.4

Q ss_pred             ceeeccccCchhhhhhhccCCccHHHHHHHHhcChHHHHHHHccCCChhhHHHHHHhhc
Q 006693          263 WRLEKIGKDGSFHKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLDHAK  321 (635)
Q Consensus       263 wRLekIgKdG~~hkrL~~~~I~TV~dFLrl~~~D~~kLR~iLg~gmS~k~We~~v~HAk  321 (635)
                      .+|.+|+..  ..++|.++||.|++|+.    .|+.+|.++||    .+.-+.+++-|+
T Consensus       660 ~qlp~i~~~--rar~L~~~g~~s~~~l~----~~~~~l~~~l~----~~~~~~i~~~~~  708 (715)
T 2va8_A          660 VQISGVGRK--RARLLYNNGIKELGDVV----MNPDKVKNLLG----QKLGEKVVQEAA  708 (715)
T ss_dssp             HTSTTCCHH--HHHHHHHTTCCSHHHHH----HCHHHHHHHHC----HHHHHHHHHHHH
T ss_pred             hhCCCCCHH--HHHHHHHcCCCCHHHHh----CCHHHHHHHhC----hhHHHHHHHHHH
Confidence            356666654  45789999999999965    78999999995    777888877654


No 27 
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=20.69  E-value=56  Score=28.17  Aligned_cols=39  Identities=13%  Similarity=0.173  Sum_probs=25.4

Q ss_pred             hhhhhccCCccHHHHHHHHhcChHHHHHHHccCCChhhHHHHHH
Q 006693          275 HKRLNNAGIFSVEDFLRLVVRDPQKLRSILGSGMSNKMWEALLD  318 (635)
Q Consensus       275 hkrL~~~~I~TV~dFLrl~~~D~~kLR~iLg~gmS~k~We~~v~  318 (635)
                      ..-|+.+||+||+|+++.   +++.|.+|=  |+-.|.-+.+.+
T Consensus        24 ~NcLkragI~Tv~dL~~~---se~dLlki~--n~G~KSl~EI~~   62 (86)
T 3k4g_A           24 ANCLXAEAIHYIGDLVQR---TEVELLXTP--NLGXXSLTEIXD   62 (86)
T ss_dssp             HHHHHHTTCCBHHHHHHS---CHHHHHTST--TCCHHHHHHHHH
T ss_pred             HHHHHHcCCCcHHHHHhC---CHHHHhhcc--ccCcccHHHHHH
Confidence            356889999999998764   555565552  344555555443


Done!