BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006694
         (635 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3E5Z|A Chain A, X-Ray Structure Of The Putative Gluconolactonase In
           Protein Family Pf08450. Northeast Structural Genomics
           Consortium Target Drr130.
 pdb|3E5Z|B Chain B, X-Ray Structure Of The Putative Gluconolactonase In
           Protein Family Pf08450. Northeast Structural Genomics
           Consortium Target Drr130
          Length = 296

 Score = 29.6 bits (65), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 93  NRMKHLIKYSQGLPNAVEAFREAGVAWDNLMDSF 126
           N+  HLI  S GL   +E  RE G  W+++ DSF
Sbjct: 77  NKQGHLIACSHGL-RRLERQREPGGEWESIADSF 109


>pdb|1X50|A Chain A, Solution Structure Of The C-Terminal Gal-Bind Lectin
           Domain From Human Galectin-4
          Length = 164

 Score = 29.6 bits (65), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 299 PFKQGYLSVMTLRLGEEGIQMTVDGKHITSFAFRESLEPWLVSEVRISGDLELISVLASG 358
           PF  G    +++R G +  ++  +G+H+  FA R S     V  + I GD+ L  V  SG
Sbjct: 102 PFGPGQFFDLSIRCGLDRFKVYANGQHLFDFAHRLSAF-QRVDTLEIQGDVTLSYVQISG 160

Query: 359 LPTS 362
            P+S
Sbjct: 161 -PSS 163


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,742,041
Number of Sequences: 62578
Number of extensions: 787300
Number of successful extensions: 1503
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1500
Number of HSP's gapped (non-prelim): 10
length of query: 635
length of database: 14,973,337
effective HSP length: 105
effective length of query: 530
effective length of database: 8,402,647
effective search space: 4453402910
effective search space used: 4453402910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)