Query 006694
Match_columns 635
No_of_seqs 317 out of 2117
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 13:08:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006694.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006694hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03133 beta-1,3-galactosyltr 100.0 8E-164 2E-168 1364.7 60.1 635 1-635 1-636 (636)
2 KOG2287 Galactosyltransferases 100.0 1E-59 2.3E-64 503.5 28.6 336 295-634 5-348 (349)
3 PLN03193 beta-1,3-galactosyltr 100.0 2.6E-50 5.7E-55 429.6 20.9 246 334-602 103-362 (408)
4 PF01762 Galactosyl_T: Galacto 100.0 2.1E-44 4.5E-49 355.2 16.8 183 399-582 1-188 (195)
5 PTZ00210 UDP-GlcNAc-dependent 100.0 1.5E-35 3.1E-40 312.5 20.1 228 382-627 77-359 (382)
6 KOG2288 Galactosyltransferases 100.0 3.4E-35 7.3E-40 293.5 18.7 244 382-634 8-272 (274)
7 smart00276 GLECT Galectin. Gal 100.0 5.2E-31 1.1E-35 244.3 16.5 128 164-357 1-128 (128)
8 cd00070 GLECT Galectin/galacto 100.0 2.1E-30 4.5E-35 239.8 16.0 127 163-355 1-127 (127)
9 PF00337 Gal-bind_lectin: Gala 100.0 1.3E-30 2.8E-35 242.3 14.6 133 163-356 1-133 (133)
10 KOG3587 Galectin, galactose-bi 99.9 4.3E-26 9.4E-31 215.5 15.4 137 161-358 3-140 (143)
11 PF02434 Fringe: Fringe-like; 99.7 3.5E-17 7.5E-22 168.6 12.0 186 385-590 6-201 (252)
12 KOG2246 Galactosyltransferases 99.5 1.4E-13 3E-18 148.4 11.4 166 381-582 87-262 (364)
13 PLN03153 hypothetical protein; 99.0 5.6E-09 1.2E-13 115.5 13.6 104 472-592 207-313 (537)
14 KOG3708 Uncharacterized conser 97.5 0.00041 8.8E-09 76.7 9.9 198 385-625 26-245 (681)
15 PF13641 Glyco_tranf_2_3: Glyc 95.0 0.25 5.5E-06 48.7 11.5 206 386-622 2-221 (228)
16 cd02520 Glucosylceramide_synth 93.9 2.2 4.8E-05 41.5 15.1 156 418-622 30-188 (196)
17 PF01755 Glyco_transf_25: Glyc 93.8 0.89 1.9E-05 44.7 12.2 93 389-491 4-101 (200)
18 TIGR03472 HpnI hopanoid biosyn 93.4 2 4.2E-05 46.9 15.0 193 384-590 40-244 (373)
19 cd04186 GT_2_like_c Subfamily 91.7 4.4 9.5E-05 37.0 13.1 85 472-590 71-156 (166)
20 cd04196 GT_2_like_d Subfamily 91.7 2 4.2E-05 41.5 11.1 154 418-581 27-189 (214)
21 cd04192 GT_2_like_e Subfamily 91.4 9 0.0002 37.3 15.7 152 419-578 29-190 (229)
22 cd06434 GT2_HAS Hyaluronan syn 91.4 4.1 8.8E-05 40.2 13.3 157 418-590 28-204 (235)
23 PF00535 Glycos_transf_2: Glyc 89.6 1.9 4.2E-05 39.1 8.6 156 388-556 3-168 (169)
24 cd06532 Glyco_transf_25 Glycos 89.6 2.1 4.6E-05 39.5 8.8 115 389-560 2-117 (128)
25 TIGR03469 HonB hopene-associat 89.0 22 0.00047 39.0 17.6 188 384-581 39-247 (384)
26 PRK11204 N-glycosyltransferase 88.8 21 0.00046 39.1 17.4 188 383-593 52-254 (420)
27 cd06423 CESA_like CESA_like is 88.0 12 0.00026 33.7 12.7 90 468-557 71-170 (180)
28 cd06439 CESA_like_1 CESA_like_ 87.9 15 0.00033 36.7 14.4 188 383-590 27-220 (251)
29 cd04191 Glucan_BSP_ModH Glucan 87.9 3.1 6.7E-05 43.2 9.6 195 389-592 3-224 (254)
30 cd06435 CESA_NdvC_like NdvC_li 87.5 8.7 0.00019 38.0 12.3 177 418-622 28-220 (236)
31 cd04185 GT_2_like_b Subfamily 87.4 7.2 0.00016 37.6 11.4 88 466-581 71-159 (202)
32 PRK14583 hmsR N-glycosyltransf 86.9 16 0.00035 40.8 15.2 185 384-592 74-274 (444)
33 cd02510 pp-GalNAc-T pp-GalNAc- 86.6 30 0.00064 36.1 16.2 114 467-581 75-210 (299)
34 cd06421 CESA_CelA_like CESA_Ce 86.4 12 0.00026 36.7 12.5 114 472-592 81-204 (234)
35 PF13506 Glyco_transf_21: Glyc 84.1 1.7 3.7E-05 42.6 5.1 109 474-589 30-144 (175)
36 cd06433 GT_2_WfgS_like WfgS an 83.6 14 0.0003 34.8 11.1 111 467-581 67-179 (202)
37 cd02525 Succinoglycan_BP_ExoA 83.3 49 0.0011 32.5 17.5 162 417-591 30-200 (249)
38 PRK14716 bacteriophage N4 adso 81.8 30 0.00066 39.7 14.7 194 384-593 65-283 (504)
39 cd04187 DPM1_like_bac Bacteria 81.5 5.9 0.00013 37.6 7.7 136 418-559 29-165 (181)
40 cd06420 GT2_Chondriotin_Pol_N 81.3 24 0.00052 33.1 11.8 95 467-581 71-165 (182)
41 COG1215 Glycosyltransferases, 80.8 38 0.00081 37.0 14.7 195 385-594 54-260 (439)
42 PF13632 Glyco_trans_2_3: Glyc 80.6 5.6 0.00012 38.3 7.3 109 478-594 1-119 (193)
43 cd02526 GT2_RfbF_like RfbF is 80.4 50 0.0011 32.4 14.2 113 475-592 75-197 (237)
44 cd04195 GT2_AmsE_like GT2_AmsE 80.1 12 0.00025 36.0 9.3 158 419-592 30-194 (201)
45 COG1216 Predicted glycosyltran 78.9 91 0.002 32.8 17.2 110 478-592 87-213 (305)
46 cd04184 GT2_RfbC_Mx_like Myxoc 78.2 64 0.0014 30.7 16.2 159 418-592 31-194 (202)
47 PF04646 DUF604: Protein of un 78.1 3.8 8.2E-05 42.7 5.3 47 542-591 12-61 (255)
48 cd06427 CESA_like_2 CESA_like_ 76.5 28 0.00061 34.9 11.2 118 466-591 75-204 (241)
49 cd04179 DPM_DPG-synthase_like 76.3 7.2 0.00015 36.8 6.4 134 418-557 28-167 (185)
50 TIGR03111 glyc2_xrt_Gpos1 puta 73.0 43 0.00093 37.4 12.5 185 384-580 48-250 (439)
51 PRK11234 nfrB bacteriophage N4 72.2 1E+02 0.0022 37.3 15.9 203 374-592 52-279 (727)
52 cd06438 EpsO_like EpsO protein 72.1 14 0.0003 35.3 7.4 77 474-555 80-169 (183)
53 PLN02726 dolichyl-phosphate be 71.4 48 0.001 33.3 11.5 133 418-559 40-184 (243)
54 TIGR01556 rhamnosyltran L-rham 60.9 93 0.002 31.9 11.4 143 442-593 42-195 (281)
55 cd06442 DPM1_like DPM1_like re 59.9 91 0.002 30.2 10.6 83 474-557 77-167 (224)
56 cd04188 DPG_synthase DPG_synth 58.3 42 0.0009 32.7 7.9 89 418-512 30-120 (211)
57 PRK10714 undecaprenyl phosphat 58.3 79 0.0017 33.9 10.6 134 418-559 38-175 (325)
58 cd00761 Glyco_tranf_GTA_type G 56.5 1.3E+02 0.0029 26.0 13.4 78 469-581 71-150 (156)
59 TIGR03030 CelA cellulose synth 44.2 1.8E+02 0.0039 34.9 11.5 128 458-593 212-352 (713)
60 KOG1594 Uncharacterized enzyme 40.4 80 0.0017 33.5 6.7 52 295-350 129-186 (305)
61 PF10111 Glyco_tranf_2_2: Glyc 34.6 5.4E+02 0.012 26.7 14.0 160 417-582 33-208 (281)
62 cd06437 CESA_CaSu_A2 Cellulose 32.8 4.8E+02 0.01 25.5 16.3 111 468-590 80-204 (232)
63 cd02514 GT13_GLCNAC-TI GT13_GL 32.7 2.8E+02 0.006 30.4 9.7 83 466-556 88-174 (334)
64 cd02522 GT_2_like_a GT_2_like_ 28.2 5.4E+02 0.012 24.6 14.7 104 468-581 65-172 (221)
65 PF06439 DUF1080: Domain of Un 27.2 1.8E+02 0.0039 27.7 6.6 39 295-333 119-157 (185)
66 COG3306 Glycosyltransferase in 27.2 1.3E+02 0.0027 31.7 5.8 171 389-578 5-192 (255)
67 cd06913 beta3GnTL1_like Beta 1 27.1 2E+02 0.0044 28.0 7.1 43 468-510 77-119 (219)
68 PRK05454 glucosyltransferase M 26.8 4.7E+02 0.01 31.5 11.1 200 383-593 122-350 (691)
69 PRK11498 bcsA cellulose syntha 26.4 3.4E+02 0.0073 33.5 9.9 126 458-592 323-462 (852)
70 PLN03181 glycosyltransferase; 23.7 4.1E+02 0.0088 30.2 9.0 87 402-488 109-211 (453)
71 PF13704 Glyco_tranf_2_4: Glyc 22.0 2.8E+02 0.0061 23.5 6.2 48 444-492 40-88 (97)
72 PF05212 DUF707: Protein of un 21.2 2.8E+02 0.006 29.8 6.9 99 475-579 116-234 (294)
73 PTZ00334 trans-sialidase; Prov 20.9 6.4E+02 0.014 30.9 10.6 51 299-349 639-691 (780)
74 PF00853 Runt: Runt domain; I 20.4 1.2E+02 0.0025 28.6 3.5 22 302-323 95-125 (135)
No 1
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=7.8e-164 Score=1364.71 Aligned_cols=635 Identities=71% Similarity=1.185 Sum_probs=607.5
Q ss_pred CccccchHHHHHHHHHHHHHHhhccCCCCCcccccccccCCCCCCccccCCCCCCCCCCCCccceeeccccccccccCCC
Q 006694 1 MKKWFGGGLIGFFLVLLVLRHAVLENPFGESTLFVPVTINSTDPLESHQDAVPPTIEPQDSANQVISADTLVSGLFLRRN 80 (635)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (635)
||||+||++|++|||+|+|||.++++|.++++.+.++..|+|+||+|+.++.+|++++|++++++++.++++|+||+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (636)
T PLN03133 1 MKKWYGGVLVVSLFMLLVLRYVLLKNPIGESYLQSVFPSNTTNPLEWLDPTNPPAVQNPENSSQVISTDTIVSSLFATRN 80 (636)
T ss_pred CceeeeeehHHHHHHHHHHHHHHhcCCCCCCCcccccccccCCchhhcccCCCccccCCCccceeeccccchhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhhhhhhhhhhhhhccCchhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCcCCcCCccccccCCCCcc
Q 006694 81 FSEEVQSSLMTWNRMKHLIKYSQGLPNAVEAFREAGVAWDNLMDSFGKDQHGDLNGSSVHKVKEKQCPHFLSNINATGFG 160 (635)
Q Consensus 81 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~v~~~~~~~~~ 160 (635)
+|+|++++|++|++||+|+++|++||+|++||+||+.||++|+++++++++++.++++..+.++++||++|+.|++++++
T Consensus 81 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~aw~~~~~~~~~~~~~~~~~~~~~~~~~~~cp~~~~~~~~~~~~ 160 (636)
T PLN03133 81 ISNEEQQSLLTWNHLKHLVDHAQVLPNGVEAIKEAGVAWESLMASVEEEKLGYTNESSLRKSKEKQCPYFLNKMNATELG 160 (636)
T ss_pred CchhhhhhhhHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCCCCchhhhhccccccc
Confidence 99999999999999999999999999999999999999999999999888888888877677889999999999999998
Q ss_pred cCCeeeeeCCCCCCCcEEEEEEEeCCCCCceEEEccCCCCCCCCCCCeEEEEEeEeCCCCCCCCCEEEEeCCcCCCCCCC
Q 006694 161 DSGYRLRIPCGLIQGSSITIIGIPNGLLGDFRIDLTGEPTPGEADPPLVLHYNVRLHGDKVTENPVIVQNTWTATQDWGE 240 (635)
Q Consensus 161 ~~p~~~~lp~gL~~Gs~ItV~G~p~~~~~~F~I~L~~~~~~~~~~~~i~LH~NpR~~~~~~~~~pvIv~Nt~~~~~~WG~ 240 (635)
..+|.+.|||||.+|++|||+|+|++++++|+|||+|+..++++++||||||||||++|+++++|+||||||+.+|+||.
T Consensus 161 ~~~~~~~iP~GL~~Gs~ItI~G~p~~~~~~F~InL~g~~~~g~~~~~iaLHfNpRf~gd~~t~~~vIV~NT~~~~~~WG~ 240 (636)
T PLN03133 161 DSGYKLKIPCGLTQGSSITIIGIPDGLLGNFRIDLTGEPLPGEPDPPIILHYNVRLLGDKITEDPVIVQNTWTAAHDWGE 240 (636)
T ss_pred CCceEEecCCcCCCCCEEEEEEEeCCCCCeEEEEEeecCcCCCCCCCEEEEEcCccCCCccccCCEEEeCCCcCCCcccH
Confidence 89999999999999999999999999999999999999887877889999999999999999999999999994489999
Q ss_pred ceecCCCCCCCCccccchhhhhhhccCCccccccCCccccccccccccccccccCcCCCCCCCcEEEEEEEeeCceEEEE
Q 006694 241 EERCPSPVPGKNKKVDELKQCNEIVGNNEGRKLTGNESSYISLRSSMERNKTRASQYFPFKQGYLSVMTLRLGEEGIQMT 320 (635)
Q Consensus 241 EeRc~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~l~i~~~~egf~i~ 320 (635)
||||++|+|.++++||||++||||+|++++++++++++++..+-.+.++++++..++|||++|++|++||+||.|||||+
T Consensus 241 EERc~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~lti~~g~egf~v~ 320 (636)
T PLN03133 241 EERCPSPDPDKNKKVDDLDQCNKMVGRDDKRVLSTSLHSNGSRRSPMSQEATKARRYFPFKQGYLSVATLRVGTEGIQMT 320 (636)
T ss_pred hhhcCCCCccccccccchhhhhhhhcccccccccccccccccccccccccccccccCCCCCCCCcEEEEEEecCCEEEEE
Confidence 99999999999999999999999999999999999877755443333488899999999999999999999999999999
Q ss_pred ECCeEEEEEEeccCCCccceeEEEEcCcceeeeecccCCCCCcccccccCcccccCCCCCCCCCeeEEEEEecCcCcHHH
Q 006694 321 VDGKHITSFAFRESLEPWLVSEVRISGDLELISVLASGLPTSEVLDEIVDLEDLRSVPLPLHHRLDLFIGVFSTANNFKR 400 (635)
Q Consensus 321 VnG~h~~sF~~R~~l~~~~v~~l~i~Gdv~l~sv~~~~lP~~~~~~~~~~~~~l~~p~~~~~~~~~LlI~V~Sap~~~~r 400 (635)
|||+|+|+|+||++++||.|++|+|+|||+|+||.+.++|+++++.++++++.|++||++++++++|+|+|+|+|+|++|
T Consensus 321 VnG~H~tsF~yR~~lep~~V~~l~V~GDv~l~SV~a~~~p~~~~~~~~~d~e~lkAppL~~~~~~~LlI~V~Sap~nf~r 400 (636)
T PLN03133 321 VDGKHITSFAYRETLEPWLVSEVRISGDLKLISVLASGLPTSEDSEHVIDLEALKSPPLSPKKPLDLFIGVFSTANNFKR 400 (636)
T ss_pred ECCeEEEeeeCCCCCCccceeEEEEeCcEEEEEEEeeCCCCCCchhcccchHHhcCCCCCCCCceEEEEEEeCCcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHHHhcCCcccCCCceEEEEEEeecCChhhHHHHHHHHhhCCCEEEeeccccCCchhHHHHHHHHhhhcccCceEEE
Q 006694 401 RMAVRRAWMQYPAVKAGAVAVRFFVGLHKNQIVNEELWTELQTYRDIQLMPFVDYYSIITWKTVAICIFGTEVVSAKYVM 480 (635)
Q Consensus 401 R~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~~df~DsY~nLtlKtl~~~~~~~~~~~a~fvm 480 (635)
|+|||+|||+....+++.++++|++|.+.++.++..|++|+++|||||++||+|+|+|||+||+++++|+.+|++++|+|
T Consensus 401 R~AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDIIq~dF~DsY~NLTlKtl~~~~wa~~c~~akFil 480 (636)
T PLN03133 401 RMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEELWNEARTYGDIQLMPFVDYYSLITWKTLAICIFGTEVVSAKYVM 480 (636)
T ss_pred HHHHHHhhccccccCCCceEEEEEEecCCcHHHHHHHHHHHHHcCCeEEEeeechhhhhHHHHHHHHHHHHhCCCceEEE
Confidence 99999999998766777899999999999988999999999999999999999999999999999999999999999999
Q ss_pred eeCCceeecHHHHHHHHHhcCCCCceEEEEeecCCCCcCCCCCCcccCCCCCCCCCCCCCCCCCceeeCHHHHHHHHHHh
Q 006694 481 KTDDDAFVRVDEVLASLNRANVTQGLLYGLINADARPHRSPDSKWYISPEEWPESSYPPWAHGPGYVVSYDIAKAVAKRH 560 (635)
Q Consensus 481 KvDDDtfVnv~~Ll~~L~~~~~~~~ly~G~~~~~~~P~Rd~~~KwyV~~~eyp~~~YPpY~~G~GYVlSrdla~~I~~~~ 560 (635)
|+|||+|||+++|+++|+.....+.+|+|++..++.|+|++.+|||||+++||.+.|||||+|+|||||+|+|++|+.++
T Consensus 481 K~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~eyp~~~YPpYasG~gYVlS~Dla~~L~~~s 560 (636)
T PLN03133 481 KTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEWPEETYPPWAHGPGYVVSRDIAKEVYKRH 560 (636)
T ss_pred EcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHCCCCCCCCCCCcCEEEEcHHHHHHHHHhh
Confidence 99999999999999999887777789999999999999999999999999999999999999999999999999999876
Q ss_pred c-ccCCCCCcchhhHHHHHHHhhcCCceecccCCCcccCCCcccceEEEEcCCHHHHHHHHHHhhccCCCCCcCCC
Q 006694 561 K-GHLKMFKLEDVAMGIWIAQLKKLGMQVSYINEPRVYNEGCRDQFVVAHYQSPREMLCLWQKLKEERLAKCCGDR 635 (635)
Q Consensus 561 ~-~~~~~f~~EDV~iGi~l~~l~~~gi~v~~~~d~rf~~~~C~~~~i~~H~~sP~~M~~lW~~l~~~~~~~C~~~~ 635 (635)
+ ..+++|++||||||+|++++++.|+++.|.++.|++..+|..+++++|+++|++|.++|+++++++.++||+++
T Consensus 561 ~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~~~C~~~~i~~H~~sP~eM~~lW~~l~~~~~~~Cc~~~ 636 (636)
T PLN03133 561 KEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYNEGCKDGYVVAHYQSPREMLCLWQKLQEGKRATCCGEW 636 (636)
T ss_pred hhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccCCcCCCCeEEEecCCHHHHHHHHHHHhccCCCCccCCC
Confidence 4 58999999999999999999999999999999999999999999999999999999999999999889999975
No 2
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-59 Score=503.46 Aligned_cols=336 Identities=35% Similarity=0.509 Sum_probs=291.6
Q ss_pred CcCCCCCCCcEEEEEEEeeCceEEEEECCeEEEEEEeccCCCccceeEEEEcCcceeeeecccCCCCCcccccccCcccc
Q 006694 295 SQYFPFKQGYLSVMTLRLGEEGIQMTVDGKHITSFAFRESLEPWLVSEVRISGDLELISVLASGLPTSEVLDEIVDLEDL 374 (635)
Q Consensus 295 ~~~fPF~~G~~F~l~i~~~~egf~i~VnG~h~~sF~~R~~l~~~~v~~l~i~Gdv~l~sv~~~~lP~~~~~~~~~~~~~l 374 (635)
.+.+|+..+..|+.++.++.+++++.+++++.++|.++...+.+..++...++.+..+.......+.+.....- ...-+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l 83 (349)
T KOG2287|consen 5 EFLFPLLPGKRFVSTLRLVLEGLQISEPLRLLTSFLLLPTIKNCLATGWAFSTPLLLTGDFGSSFPLSFADFQK-FFYLL 83 (349)
T ss_pred cccccccccchhhhhhhhhheeeeeccccccCCcccccCCCcccccccccccCCccccCcccccccccchhhcc-Chhhh
Confidence 56799999999999999999999999999999999999987788999999999997777776666665543211 11112
Q ss_pred cCCCCCCCC-CeeEEEEEecCcCcHHHHHHHHHHhcCCcccCCCceEEEEEEeecCCh-hhHHHHHHHHhhCCCEEEeec
Q 006694 375 RSVPLPLHH-RLDLFIGVFSTANNFKRRMAVRRAWMQYPAVKAGAVAVRFFVGLHKNQ-IVNEELWTELQTYRDIQLMPF 452 (635)
Q Consensus 375 ~~p~~~~~~-~~~LlI~V~Sap~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~-~~~~~L~~Ea~~ygDII~~df 452 (635)
..|+.++.. .++|+|+|+|+++|++||++||+|||+...+++++++++|++|.+.++ .++..|.+|++.|||||++||
T Consensus 84 ~~p~~~~~~~~~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygDIi~~df 163 (349)
T KOG2287|consen 84 YLPEICDPDRPPELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGDIIQVDF 163 (349)
T ss_pred cCChhhcCCCCceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCCEEEEec
Confidence 334444333 489999999999999999999999999998889999999999999875 568899999999999999999
Q ss_pred cccCCchhHHHHHHHHhhhc-ccCceEEEeeCCceeecHHHHHHHHHhc-CCCCceEEEEeecCCCCcCCCCCCcccCCC
Q 006694 453 VDYYSIITWKTVAICIFGTE-VVSAKYVMKTDDDAFVRVDEVLASLNRA-NVTQGLLYGLINADARPHRSPDSKWYISPE 530 (635)
Q Consensus 453 ~DsY~nLtlKtl~~~~~~~~-~~~a~fvmKvDDDtfVnv~~Ll~~L~~~-~~~~~ly~G~~~~~~~P~Rd~~~KwyV~~~ 530 (635)
.|+|+|+|+|+++++.|+.. |++++|+||+|||+||++++|+.+|+.. .+...+|+|++..+..|+|++.+|||||++
T Consensus 164 ~Dty~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~ 243 (349)
T KOG2287|consen 164 EDTYFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPES 243 (349)
T ss_pred ccchhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHH
Confidence 99999999999999999765 9999999999999999999999999998 788899999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCceeeCHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhcCCceecccCC-Cc---ccCCCcccceE
Q 006694 531 EWPESSYPPWAHGPGYVVSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIAQLKKLGMQVSYINE-PR---VYNEGCRDQFV 606 (635)
Q Consensus 531 eyp~~~YPpY~~G~GYVlSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~~l~~~gi~v~~~~d-~r---f~~~~C~~~~i 606 (635)
+||.+.|||||+|+|||+|+|+|++|++++ .+.+++++|||+||+|+++.. |+.+...+. .+ .+..+|..+++
T Consensus 244 ~y~~~~YP~Y~sG~gYvis~~~a~~l~~~s-~~~~~~~iEDV~~g~~l~~~~--gi~~~~~~~~~~~~~~~~~~~~~~~~ 320 (349)
T KOG2287|consen 244 EYPCSVYPPYASGPGYVISGDAARRLLKAS-KHLKFFPIEDVFVGGCLAEDL--GIKPVNHPGFFEIPLSFDPCCYRDLL 320 (349)
T ss_pred HCCCCCCCCcCCCceeEecHHHHHHHHHHh-cCCCccchHHHHHHHHHHHhc--CCCcccCcccccccccCCCCcccceE
Confidence 999999999999999999999999999988 799999999999999999874 454332222 11 22455667999
Q ss_pred EEEcCCHHHHHHHHHHhhccCCCCCcCC
Q 006694 607 VAHYQSPREMLCLWQKLKEERLAKCCGD 634 (635)
Q Consensus 607 ~~H~~sP~~M~~lW~~l~~~~~~~C~~~ 634 (635)
+.|+++|.+|.++|+++++.....||+.
T Consensus 321 ~~H~~~p~e~~~~w~~~~~~~~~~c~~~ 348 (349)
T KOG2287|consen 321 AVHRLSPNEMIYLWKKLKDLANLKCKNL 348 (349)
T ss_pred EEecCCHHHHHHHHHHhhcccccccccC
Confidence 9999999999999999999555688864
No 3
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=2.6e-50 Score=429.60 Aligned_cols=246 Identities=24% Similarity=0.375 Sum_probs=214.6
Q ss_pred CCCccceeEEEEcCcceeeeecccCCCCCcccccccCcccccCCCCCCCCCeeEEEEEecCcCcHHHHHHHHHHhcCCcc
Q 006694 334 SLEPWLVSEVRISGDLELISVLASGLPTSEVLDEIVDLEDLRSVPLPLHHRLDLFIGVFSTANNFKRRMAVRRAWMQYPA 413 (635)
Q Consensus 334 ~l~~~~v~~l~i~Gdv~l~sv~~~~lP~~~~~~~~~~~~~l~~p~~~~~~~~~LlI~V~Sap~~~~rR~aIR~TW~~~~~ 413 (635)
.||+|++++.+ +.++.++++|.++++.. + +.+.+++++|+|+|.|+++|++||++||+|||+...
T Consensus 103 ~le~el~~~~~------~~~~~~~~~~~~~~~~~------~---~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~ 167 (408)
T PLN03193 103 NLEMELAAARA------AQESILNGSPISEDLKK------T---QSSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQGE 167 (408)
T ss_pred HHhHHHHHHHh------hhhhhccCCCccccccc------c---CCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCcc
Confidence 46778888777 67777889999888754 1 444477899999999999999999999999998643
Q ss_pred c-----CCCceEEEEEEeecC--ChhhHHHHHHHHhhCCCEEEeeccccCCchhHHHHHHHHhhhcccCceEEEeeCCce
Q 006694 414 V-----KAGAVAVRFFVGLHK--NQIVNEELWTELQTYRDIQLMPFVDYYSIITWKTVAICIFGTEVVSAKYVMKTDDDA 486 (635)
Q Consensus 414 ~-----~~~~v~v~FvvG~~~--~~~~~~~L~~Ea~~ygDII~~df~DsY~nLtlKtl~~~~~~~~~~~a~fvmKvDDDt 486 (635)
. ....++++||+|.+. +..++.+|++|+++|||||++||+|+|.|||+||++++.|+..+++++||||+|||+
T Consensus 168 ~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDv 247 (408)
T PLN03193 168 KRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDV 247 (408)
T ss_pred cccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCc
Confidence 2 235699999999987 567889999999999999999999999999999999999999999999999999999
Q ss_pred eecHHHHHHHHHhcCCCCceEEEEeecCCCCcCCCCCCcccCCCCC----CCCCCCCCCCCCceeeCHHHHHHHHHHhcc
Q 006694 487 FVRVDEVLASLNRANVTQGLLYGLINADARPHRSPDSKWYISPEEW----PESSYPPWAHGPGYVVSYDIAKAVAKRHKG 562 (635)
Q Consensus 487 fVnv~~Ll~~L~~~~~~~~ly~G~~~~~~~P~Rd~~~KwyV~~~ey----p~~~YPpY~~G~GYVlSrdla~~I~~~~~~ 562 (635)
|||+++|+.+|........+|+|++.. .|+|++.++||+++++| +.+.|||||.|+|||||+|+|+.|+.+. .
T Consensus 248 fVnv~~L~~~L~~~~~~~rlYiG~m~~--gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n~-~ 324 (408)
T PLN03193 248 HVNIATLGETLVRHRKKPRVYIGCMKS--GPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYISINQ-H 324 (408)
T ss_pred eEcHHHHHHHHHhcCCCCCEEEEeccc--CccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHHhCh-h
Confidence 999999999998765555799999976 48898878888888888 5699999999999999999999999877 6
Q ss_pred cCCCCCcchhhHHHHHHHhhcCCceecccCCCcccC---CCcc
Q 006694 563 HLKMFKLEDVAMGIWIAQLKKLGMQVSYINEPRVYN---EGCR 602 (635)
Q Consensus 563 ~~~~f~~EDV~iGi~l~~l~~~gi~v~~~~d~rf~~---~~C~ 602 (635)
.++.|++|||+||+|+. |+++.|+|+.+||. ..|.
T Consensus 325 ~L~~y~~EDV~vG~Wl~-----~L~V~~vdd~~fcc~~~~~C~ 362 (408)
T PLN03193 325 VLHKYANEDVSLGSWFI-----GLDVEHIDDRRLCCGTPPDCE 362 (408)
T ss_pred hhcccCcchhhhhhHhc-----cCCceeeecccccCCCCcccc
Confidence 88899999999999996 45789999999985 4575
No 4
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=2.1e-44 Score=355.22 Aligned_cols=183 Identities=38% Similarity=0.624 Sum_probs=171.7
Q ss_pred HHHHHHHHHhcCCcccCCCceEEEEEEeecC--ChhhHHHHHHHHhhCCCEEEeeccccCCchhHHHHHHHHhhh-cccC
Q 006694 399 KRRMAVRRAWMQYPAVKAGAVAVRFFVGLHK--NQIVNEELWTELQTYRDIQLMPFVDYYSIITWKTVAICIFGT-EVVS 475 (635)
Q Consensus 399 ~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~--~~~~~~~L~~Ea~~ygDII~~df~DsY~nLtlKtl~~~~~~~-~~~~ 475 (635)
+||++||+||++.......+++++|++|.+. +..++..|++|+++|+|||++||.|+|.|+|+|++++++|+. +|++
T Consensus 1 ~rR~~IR~TW~~~~~~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~ 80 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNFKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWASKHCPN 80 (195)
T ss_pred ChHHHHHHHHhcccccCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHHhhCCc
Confidence 5899999999998877788999999999998 677888899999999999999999999999999999999975 4788
Q ss_pred ceEEEeeCCceeecHHHHHHHHHhc--CCCCceEEEEeecCCCCcCCCCCCcccCCCCCCCCCCCCCCCCCceeeCHHHH
Q 006694 476 AKYVMKTDDDAFVRVDEVLASLNRA--NVTQGLLYGLINADARPHRSPDSKWYISPEEWPESSYPPWAHGPGYVVSYDIA 553 (635)
Q Consensus 476 a~fvmKvDDDtfVnv~~Ll~~L~~~--~~~~~ly~G~~~~~~~P~Rd~~~KwyV~~~eyp~~~YPpY~~G~GYVlSrdla 553 (635)
++|++|+|||+|||+++|.++|... ...+..++|.+..+.+|+|++.+|||+|+++||.+.|||||+|+||+||+++|
T Consensus 81 ~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~~~~yP~y~~G~~yvls~~~v 160 (195)
T PF01762_consen 81 AKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEYPDDYYPPYCSGGGYVLSSDVV 160 (195)
T ss_pred hhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeecccccCCCcCCCCeEEecHHHH
Confidence 9999999999999999999999986 45677899999988899999999999999999999999999999999999999
Q ss_pred HHHHHHhcccCCCCCcchhhHHHHHHHhh
Q 006694 554 KAVAKRHKGHLKMFKLEDVAMGIWIAQLK 582 (635)
Q Consensus 554 ~~I~~~~~~~~~~f~~EDV~iGi~l~~l~ 582 (635)
+.|+.++ ..++.|++|||++|+|+.+++
T Consensus 161 ~~i~~~~-~~~~~~~~eDv~iGi~~~~~~ 188 (195)
T PF01762_consen 161 KRIYKAS-SHTPFFPLEDVFIGILAEKLG 188 (195)
T ss_pred HHHHHHh-hcCCCCCchHHHHHHHHHHCC
Confidence 9999998 688999999999999999884
No 5
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=100.00 E-value=1.5e-35 Score=312.53 Aligned_cols=228 Identities=23% Similarity=0.299 Sum_probs=190.6
Q ss_pred CCCeeEEEEEecCcCc--HHHHHHHHHHhcCCcccC------CCceEEEEEEeecCCh--hhHHHHHHHHhhCCCEEEee
Q 006694 382 HHRLDLFIGVFSTANN--FKRRMAVRRAWMQYPAVK------AGAVAVRFFVGLHKNQ--IVNEELWTELQTYRDIQLMP 451 (635)
Q Consensus 382 ~~~~~LlI~V~Sap~~--~~rR~aIR~TW~~~~~~~------~~~v~v~FvvG~~~~~--~~~~~L~~Ea~~ygDII~~d 451 (635)
..+..++++|+|..++ +.||++.|+||++++.+. .+.+.++|++|.+++. +++++|++|+++|||||++|
T Consensus 77 ~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVilp 156 (382)
T PTZ00210 77 AQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITLP 156 (382)
T ss_pred cCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEEe
Confidence 5678899999999998 999999999999998776 6889999999999987 89999999999999999999
Q ss_pred c------------------cccCCchhHHHHHHHHhhhc-ccCceEEEeeCCceeecHHHHHHHHHhcCCCCceEEEEee
Q 006694 452 F------------------VDYYSIITWKTVAICIFGTE-VVSAKYVMKTDDDAFVRVDEVLASLNRANVTQGLLYGLIN 512 (635)
Q Consensus 452 f------------------~DsY~nLtlKtl~~~~~~~~-~~~a~fvmKvDDDtfVnv~~Ll~~L~~~~~~~~ly~G~~~ 512 (635)
| .|+|.++|+||+++++|+.+ ||+++||||+|||+|||++++++.|+. .+++++|+|.+.
T Consensus 157 f~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~-~prr~LY~G~v~ 235 (382)
T PTZ00210 157 TNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRV-MPRHGLYMGRYN 235 (382)
T ss_pred cccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhh-CCCCceEEEeeC
Confidence 9 67778899999999999866 789999999999999999999999977 567779999999
Q ss_pred cCCCCcCCCCCCcccCCCCCCCCCCCCCCCCCceeeCHHHHHHHHHHhc-ccC---------------CCCCcchhhHHH
Q 006694 513 ADARPHRSPDSKWYISPEEWPESSYPPWAHGPGYVVSYDIAKAVAKRHK-GHL---------------KMFKLEDVAMGI 576 (635)
Q Consensus 513 ~~~~P~Rd~~~KwyV~~~eyp~~~YPpY~~G~GYVlSrdla~~I~~~~~-~~~---------------~~f~~EDV~iGi 576 (635)
....|.|++ +||||+|+||+||+|+|+.|++... .++ -.+..||+++|.
T Consensus 236 ~~~~p~Rd~---------------~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDiMvG~ 300 (382)
T PTZ00210 236 YYNRIWRRN---------------QLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDVMVGM 300 (382)
T ss_pred CCCccccCC---------------CCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCchHHHHHH
Confidence 887888863 4999999999999999999999853 333 235679999999
Q ss_pred HHHH-hhcCCceecccC--CCccc---CCCcc----cceEEEEcCCHHHHHHHHHHhhccC
Q 006694 577 WIAQ-LKKLGMQVSYIN--EPRVY---NEGCR----DQFVVAHYQSPREMLCLWQKLKEER 627 (635)
Q Consensus 577 ~l~~-l~~~gi~v~~~~--d~rf~---~~~C~----~~~i~~H~~sP~~M~~lW~~l~~~~ 627 (635)
+|+. ++..+ ..|+. ..+|+ ...|. .+.|++|...+.+-..+...+++..
T Consensus 301 vLr~~~k~~~--l~~V~~~~c~Fhd~~~~~~~~~v~~~sVvvHhike~dYa~Lm~~F~n~~ 359 (382)
T PTZ00210 301 ILREKVVYRN--LISVEMGRCHFHNAGKFGVRKSVRNMSVVIHHIQEADYEMLMDYFPEGV 359 (382)
T ss_pred HHHHhcCcCc--eeeeccccccceecCCCCCccccccceEEEEecCHHHHHHHHHHhcCCC
Confidence 9954 33222 22332 23332 13342 4689999999999888888888754
No 6
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-35 Score=293.50 Aligned_cols=244 Identities=27% Similarity=0.444 Sum_probs=208.2
Q ss_pred CCCeeEEEEEecCcCcHHHHHHHHHHhcCCc-----ccCCCceEEEEEEee-cCChhhHHHHHHHHhhCCCEEEee-ccc
Q 006694 382 HHRLDLFIGVFSTANNFKRRMAVRRAWMQYP-----AVKAGAVAVRFFVGL-HKNQIVNEELWTELQTYRDIQLMP-FVD 454 (635)
Q Consensus 382 ~~~~~LlI~V~Sap~~~~rR~aIR~TW~~~~-----~~~~~~v~v~FvvG~-~~~~~~~~~L~~Ea~~ygDII~~d-f~D 454 (635)
.+++.++|+|.|+++...||+++|+|||... ......+.++|++|. +...+...+|.+|.++|+|.+.+| .+|
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~~g~~~~r~ie~E~~~~~DfllLd~h~E 87 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTATLGASLDRALEEENAQHGDFLLLDRHEE 87 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCCccHHHHHHHHHHHHhcCCeEeechhHH
Confidence 4589999999999999999999999999872 223567999999999 556788899999999999999999 999
Q ss_pred cCCchhHHHHHHHHhhhcccCceEEEeeCCceeecHHHHHHHHHhcCCCCceEEEEeecCCCCcCCCCCCcccCCCCCC-
Q 006694 455 YYSIITWKTVAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLNRANVTQGLLYGLINADARPHRSPDSKWYISPEEWP- 533 (635)
Q Consensus 455 sY~nLtlKtl~~~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~~~~~~ly~G~~~~~~~P~Rd~~~KwyV~~~eyp- 533 (635)
.|.+|+.||++++.+|....+++|++|+|||+|||++.|...|.+......+|+|++..+ +++-.+.+|||-|+ |.
T Consensus 88 ~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg-~v~~~~~~kw~Epe--Wkf 164 (274)
T KOG2288|consen 88 AYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSG-PVLTQPGGKWYEPE--WKF 164 (274)
T ss_pred HHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCC-ccccCCCCcccChh--hhc
Confidence 999999999999999999999999999999999999999999998666677999999876 45556789999987 54
Q ss_pred CCC--CCCCCCCCceeeCHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhcCCceecccCCCcccCCCcc--cceEEEE
Q 006694 534 ESS--YPPWAHGPGYVVSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIAQLKKLGMQVSYINEPRVYNEGCR--DQFVVAH 609 (635)
Q Consensus 534 ~~~--YPpY~~G~GYVlSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~~l~~~gi~v~~~~d~rf~~~~C~--~~~i~~H 609 (635)
.+. |-+|+.|++|+||+|+|..|.... ..+..+..|||.+|-|+. |++|.+++|.|+|...|. .+.+-++
T Consensus 165 g~~g~YfrhA~G~~YvlS~dLa~yi~in~-~lL~~y~nEDVSlGaW~~-----gldV~h~dd~rlC~~~~~~~~~~~~~~ 238 (274)
T KOG2288|consen 165 GDNGNYFRHATGGGYVLSKDLATYISINR-QLLHKYANEDVSLGAWMI-----GLDVEHVDDPRLCCSTPKALAGMVCAA 238 (274)
T ss_pred CcccccchhccCceEEeeHHHHHHHHHhH-HHHHhhccCCcccceeee-----eeeeeEecCCcccccchhhhccceeee
Confidence 333 999999999999999999999987 578889999999999996 568999999999977772 3333333
Q ss_pred c---------CCHHHHHHHHHHhhccCCCCCcCC
Q 006694 610 Y---------QSPREMLCLWQKLKEERLAKCCGD 634 (635)
Q Consensus 610 ~---------~sP~~M~~lW~~l~~~~~~~C~~~ 634 (635)
. .+..+|..++..=..+..+.||..
T Consensus 239 ~~~~kcsglC~~~~rm~~~h~~~~~~~~~~~~~~ 272 (274)
T KOG2288|consen 239 SFDWKCSGLCKSEDRMLEVHKYDWEGKPATCCSR 272 (274)
T ss_pred eecccccccCchHHHHhHHHHhhccCCCcccCcc
Confidence 2 345678888877666667888864
No 7
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=99.97 E-value=5.2e-31 Score=244.27 Aligned_cols=128 Identities=34% Similarity=0.498 Sum_probs=118.6
Q ss_pred eeeeeCCCCCCCcEEEEEEEeCCCCCceEEEccCCCCCCCCCCCeEEEEEeEeCCCCCCCCCEEEEeCCcCCCCCCCcee
Q 006694 164 YRLRIPCGLIQGSSITIIGIPNGLLGDFRIDLTGEPTPGEADPPLVLHYNVRLHGDKVTENPVIVQNTWTATQDWGEEER 243 (635)
Q Consensus 164 ~~~~lp~gL~~Gs~ItV~G~p~~~~~~F~I~L~~~~~~~~~~~~i~LH~NpR~~~~~~~~~pvIv~Nt~~~~~~WG~EeR 243 (635)
|+..||+||.+|+.|+|.|+|..++++|.|||+++ .++|+|||||||+++ +||+||+.+ |.||.|||
T Consensus 1 ~~~~lp~~l~~G~~i~i~G~~~~~~~~F~inl~~~------~~di~lH~n~rf~~~------~iV~Ns~~~-g~Wg~Eer 67 (128)
T smart00276 1 FTLPIPGGLKPGQTLTVRGIVLPDAKRFSINLLTG------GDDIALHFNPRFNEN------KIVCNSKLN-GSWGSEER 67 (128)
T ss_pred CcccCCCCCCCCCEEEEEEEECCCCCEEEEEeecC------CCCEEEEEeccCCCC------EEEEeCccC-CccchheE
Confidence 46789999999999999999999999999999995 358999999999975 899999996 89999999
Q ss_pred cCCCCCCCCccccchhhhhhhccCCccccccCCccccccccccccccccccCcCCCCCCCcEEEEEEEeeCceEEEEECC
Q 006694 244 CPSPVPGKNKKVDELKQCNEIVGNNEGRKLTGNESSYISLRSSMERNKTRASQYFPFKQGYLSVMTLRLGEEGIQMTVDG 323 (635)
Q Consensus 244 c~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~l~i~~~~egf~i~VnG 323 (635)
+ ..|||.+|++|+|+|.++.++|+|+|||
T Consensus 68 ~---------------------------------------------------~~~Pf~~g~~F~l~i~~~~~~f~i~vng 96 (128)
T smart00276 68 E---------------------------------------------------GGFPFQPGQPFDLTIIVQPDHFQIFVNG 96 (128)
T ss_pred c---------------------------------------------------CCCCCCCCCEEEEEEEEcCCEEEEEECC
Confidence 5 4799999999999999999999999999
Q ss_pred eEEEEEEeccCCCccceeEEEEcCcceeeeeccc
Q 006694 324 KHITSFAFRESLEPWLVSEVRISGDLELISVLAS 357 (635)
Q Consensus 324 ~h~~sF~~R~~l~~~~v~~l~i~Gdv~l~sv~~~ 357 (635)
+|+++|+||.+ ++.|+.|.|.||+.|++|.++
T Consensus 97 ~~~~~f~~R~~--~~~i~~l~v~Gdv~l~~v~~~ 128 (128)
T smart00276 97 VHITTFPHRLP--LESIDYLSINGDVQLTSVSFE 128 (128)
T ss_pred EeEEEecCCCC--cccEeEEEEeCCEEEEEEEEC
Confidence 99999999985 579999999999999999763
No 8
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=99.97 E-value=2.1e-30 Score=239.75 Aligned_cols=127 Identities=35% Similarity=0.561 Sum_probs=118.6
Q ss_pred CeeeeeCCCCCCCcEEEEEEEeCCCCCceEEEccCCCCCCCCCCCeEEEEEeEeCCCCCCCCCEEEEeCCcCCCCCCCce
Q 006694 163 GYRLRIPCGLIQGSSITIIGIPNGLLGDFRIDLTGEPTPGEADPPLVLHYNVRLHGDKVTENPVIVQNTWTATQDWGEEE 242 (635)
Q Consensus 163 p~~~~lp~gL~~Gs~ItV~G~p~~~~~~F~I~L~~~~~~~~~~~~i~LH~NpR~~~~~~~~~pvIv~Nt~~~~~~WG~Ee 242 (635)
||...||++|.+|+.|+|.|++..++++|.|||+++ ..+|+|||||||.++ +||+||+.+ |.||.||
T Consensus 1 p~~~~l~~~l~~G~~i~i~G~~~~~~~~f~Inl~~~------~~~i~lH~n~rf~~~------~IV~Ns~~~-g~Wg~Ee 67 (127)
T cd00070 1 PYKLPLPGGLKPGSTLTVKGRVLPNAKRFSINLGTG------SSDIALHFNPRFDEN------VIVRNSFLN-GNWGPEE 67 (127)
T ss_pred CcccccCCCCcCCCEEEEEEEECCCCCEEEEEEecC------CCCEEEEEeeeCCCC------EEEEcCCCC-CEecHhh
Confidence 688899999999999999999999999999999995 338999999999985 899999996 8999999
Q ss_pred ecCCCCCCCCccccchhhhhhhccCCccccccCCccccccccccccccccccCcCCCCCCCcEEEEEEEeeCceEEEEEC
Q 006694 243 RCPSPVPGKNKKVDELKQCNEIVGNNEGRKLTGNESSYISLRSSMERNKTRASQYFPFKQGYLSVMTLRLGEEGIQMTVD 322 (635)
Q Consensus 243 Rc~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~l~i~~~~egf~i~Vn 322 (635)
|+ ..|||.+|++|+|+|.++.++|+|+||
T Consensus 68 r~---------------------------------------------------~~~pf~~g~~F~l~i~~~~~~f~i~vn 96 (127)
T cd00070 68 RS---------------------------------------------------GGFPFQPGQPFELTILVEEDKFQIFVN 96 (127)
T ss_pred cc---------------------------------------------------CCCCCCCCCeEEEEEEEcCCEEEEEEC
Confidence 96 469999999999999999999999999
Q ss_pred CeEEEEEEeccCCCccceeEEEEcCcceeeeec
Q 006694 323 GKHITSFAFRESLEPWLVSEVRISGDLELISVL 355 (635)
Q Consensus 323 G~h~~sF~~R~~l~~~~v~~l~i~Gdv~l~sv~ 355 (635)
|+|+++|+||.+ +++|+.|.|.||+.|++|.
T Consensus 97 g~~~~~F~~R~~--~~~i~~l~v~Gdv~i~~v~ 127 (127)
T cd00070 97 GQHFFSFPHRLP--LESIDYLSINGDVSLTSVE 127 (127)
T ss_pred CEeEEEecCcCC--hhhEEEEEEeCCEEEEEeC
Confidence 999999999984 5899999999999999873
No 9
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=99.97 E-value=1.3e-30 Score=242.28 Aligned_cols=133 Identities=35% Similarity=0.580 Sum_probs=120.4
Q ss_pred CeeeeeCCCCCCCcEEEEEEEeCCCCCceEEEccCCCCCCCCCCCeEEEEEeEeCCCCCCCCCEEEEeCCcCCCCCCCce
Q 006694 163 GYRLRIPCGLIQGSSITIIGIPNGLLGDFRIDLTGEPTPGEADPPLVLHYNVRLHGDKVTENPVIVQNTWTATQDWGEEE 242 (635)
Q Consensus 163 p~~~~lp~gL~~Gs~ItV~G~p~~~~~~F~I~L~~~~~~~~~~~~i~LH~NpR~~~~~~~~~pvIv~Nt~~~~~~WG~Ee 242 (635)
||++.||+||.+|+.|+|.|++..++++|.|||+++. .++.++++|||||||++. .+||+||+.+ |.||.||
T Consensus 1 pf~~~l~~~l~~G~~i~i~G~~~~~~~~f~inl~~~~--~~~~~~i~lH~~~rf~~~-----~~iv~Ns~~~-g~Wg~Ee 72 (133)
T PF00337_consen 1 PFTARLPGGLSPGDSIIIRGTVPPDAKRFSINLQTGP--NDPDDDIALHFNPRFDEQ-----NVIVRNSRIN-GKWGQEE 72 (133)
T ss_dssp SEEEEETTEEETTEEEEEEEEEBTTSSBEEEEEEES---STTTTEEEEEEEEECTTE-----EEEEEEEEET-TEE-SEE
T ss_pred CceEEcCCCCCCCcEEEEEEEECCCCCEEEEEecCCC--cCCCCCEEEEEEEEeCCC-----ceEEEeceEC-CEeccce
Confidence 8999999999999999999999999999999999975 234789999999999982 2899999996 8999999
Q ss_pred ecCCCCCCCCccccchhhhhhhccCCccccccCCccccccccccccccccccCcCCCCCCCcEEEEEEEeeCceEEEEEC
Q 006694 243 RCPSPVPGKNKKVDELKQCNEIVGNNEGRKLTGNESSYISLRSSMERNKTRASQYFPFKQGYLSVMTLRLGEEGIQMTVD 322 (635)
Q Consensus 243 Rc~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~l~i~~~~egf~i~Vn 322 (635)
|+ ..|||.+|++|+|+|.++.++|+|+||
T Consensus 73 ~~---------------------------------------------------~~~pf~~g~~F~i~I~~~~~~f~I~vn 101 (133)
T PF00337_consen 73 RE---------------------------------------------------SPFPFQPGQPFEIRIRVEEDGFKIYVN 101 (133)
T ss_dssp EE---------------------------------------------------SSTSSTTTSEEEEEEEEESSEEEEEET
T ss_pred ee---------------------------------------------------eeeeecCCceEEEEEEEecCeeEEEEC
Confidence 95 579999999999999999999999999
Q ss_pred CeEEEEEEeccCCCccceeEEEEcCcceeeeecc
Q 006694 323 GKHITSFAFRESLEPWLVSEVRISGDLELISVLA 356 (635)
Q Consensus 323 G~h~~sF~~R~~l~~~~v~~l~i~Gdv~l~sv~~ 356 (635)
|+|+++|+||.+ ++.|+.|.|.||++|+||.+
T Consensus 102 g~~~~~F~~R~~--~~~i~~l~i~Gdv~i~~v~~ 133 (133)
T PF00337_consen 102 GKHFCSFPHRLP--LSSIDYLQIQGDVQIYSVEF 133 (133)
T ss_dssp TEEEEEEE-SSC--GGGEEEEEEEESEEEEEEEE
T ss_pred CeEEEEeeCcCC--HHHcCEEEEECCEEEEEEEC
Confidence 999999999984 58999999999999999974
No 10
>KOG3587 consensus Galectin, galactose-binding lectin [Extracellular structures]
Probab=99.94 E-value=4.3e-26 Score=215.55 Aligned_cols=137 Identities=29% Similarity=0.457 Sum_probs=125.3
Q ss_pred cCCeeeeeCCCCCCCcEEEEEEEeCCC-CCceEEEccCCCCCCCCCCCeEEEEEeEeCCCCCCCCCEEEEeCCcCCCCCC
Q 006694 161 DSGYRLRIPCGLIQGSSITIIGIPNGL-LGDFRIDLTGEPTPGEADPPLVLHYNVRLHGDKVTENPVIVQNTWTATQDWG 239 (635)
Q Consensus 161 ~~p~~~~lp~gL~~Gs~ItV~G~p~~~-~~~F~I~L~~~~~~~~~~~~i~LH~NpR~~~~~~~~~pvIv~Nt~~~~~~WG 239 (635)
.+|+...++++|.+|+.+++.|.+..+ +++|.++++.+-...+ +.+|+|||||||+++ .||+||+.+ |.||
T Consensus 3 ~~p~~~~~~~~l~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~dia~Hfnprf~~~------~VVrNs~~~-g~Wg 74 (143)
T KOG3587|consen 3 GVPFPVPIPSGLPPGSQVTIKGLVLYGIPKRFAVNLRFGTNLDS-DSDIALHFNPRFDEK------GVVRNSLIN-GEWG 74 (143)
T ss_pred CcccccccccCcCCCcEEEEEEEEcccCCCcceeeeEeecccCC-CCcEEEEEeccCCCC------eEEEecccC-CccC
Confidence 477888889999999999999999965 6799999998877666 677999999999987 599999986 8999
Q ss_pred CceecCCCCCCCCccccchhhhhhhccCCccccccCCccccccccccccccccccCcCCCCCCCcEEEEEEEeeCceEEE
Q 006694 240 EEERCPSPVPGKNKKVDELKQCNEIVGNNEGRKLTGNESSYISLRSSMERNKTRASQYFPFKQGYLSVMTLRLGEEGIQM 319 (635)
Q Consensus 240 ~EeRc~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~l~i~~~~egf~i 319 (635)
.|||. ..+||++|++|.|+|.++.+.|+|
T Consensus 75 ~eE~~---------------------------------------------------~~~PF~~g~~F~l~I~~~~~~~~I 103 (143)
T KOG3587|consen 75 LEERE---------------------------------------------------GGNPFQPGQPFDLTILVEEDKFQI 103 (143)
T ss_pred chhhc---------------------------------------------------CCCCCCCCCeEEEEEEEccCeEEE
Confidence 99995 679999999999999999999999
Q ss_pred EECCeEEEEEEeccCCCccceeEEEEcCcceeeeecccC
Q 006694 320 TVDGKHITSFAFRESLEPWLVSEVRISGDLELISVLASG 358 (635)
Q Consensus 320 ~VnG~h~~sF~~R~~l~~~~v~~l~i~Gdv~l~sv~~~~ 358 (635)
.|||.|+++|+||. ++..|..|.|.||++|.+|.++.
T Consensus 104 ~VNg~~f~~y~HR~--p~~~v~~l~i~Gdv~i~~i~~~~ 140 (143)
T KOG3587|consen 104 FVNGVHFADYPHRI--PPSSVQTLQINGDVQITSIEFSN 140 (143)
T ss_pred EECCEEEEeecCCC--CChheeEEEEeeeEEEEEEEEEc
Confidence 99999999999999 56799999999999999999864
No 11
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.71 E-value=3.5e-17 Score=168.60 Aligned_cols=186 Identities=19% Similarity=0.249 Sum_probs=98.6
Q ss_pred eeEEEEEecCcCcHHHH-HHHHHHhcCCcccCCCceEEEEEEeecCChhhHHHHHHHHhhCCCEEEeeccccCCchhHHH
Q 006694 385 LDLFIGVFSTANNFKRR-MAVRRAWMQYPAVKAGAVAVRFFVGLHKNQIVNEELWTELQTYRDIQLMPFVDYYSIITWKT 463 (635)
Q Consensus 385 ~~LlI~V~Sap~~~~rR-~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~~df~DsY~nLtlKt 463 (635)
-+++|+|+|++++.+.| .+|++||++... . ..|+.....+..+.. + ...+++..+....+...+++.
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~----~--~~~ifsd~~d~~l~~----~--~~~~l~~~~~~~~~~~~~~~~ 73 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCN----K--QTFIFSDAEDPSLPT----V--TGVHLVNPNCDAGHCRKTLSC 73 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSG----G--GEEEEESS--HHHHH----H--HGGGEEE-------------H
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcC----C--ceEEecCcccccccc----c--cccccccCCCcchhhHHHHHH
Confidence 47999999998766555 999999998653 1 234433333433332 2 345667777777777667777
Q ss_pred HHHHHhhhc-ccCceEEEeeCCceeecHHHHHHHHHhcCCCCceEEEEeecCCCCcCCCCCCcccCCCCCCCCCCCCCC-
Q 006694 464 VAICIFGTE-VVSAKYVMKTDDDAFVRVDEVLASLNRANVTQGLLYGLINADARPHRSPDSKWYISPEEWPESSYPPWA- 541 (635)
Q Consensus 464 l~~~~~~~~-~~~a~fvmKvDDDtfVnv~~Ll~~L~~~~~~~~ly~G~~~~~~~P~Rd~~~KwyV~~~eyp~~~YPpY~- 541 (635)
++.+.+... .++++|++++||||||++++|+++|..+++.++.|+|...... +..... +. .........| .|+
T Consensus 74 ~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~-~~~~~~-~~--~~~~~~~~~~-~f~~ 148 (252)
T PF02434_consen 74 KMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDR-PIEIIH-RF--NPNKSKDSGF-WFAT 148 (252)
T ss_dssp HHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE---------------------------EE-
T ss_pred HHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCc-cceeec-cc--cccccCcCce-EeeC
Confidence 766655433 4688999999999999999999999999999999999986542 222100 00 0000011111 233
Q ss_pred CCCceeeCHHHHHHHHHHhc-cc-CCC----CCcchhhHHHHHHH-hhcCCceecc
Q 006694 542 HGPGYVVSYDIAKAVAKRHK-GH-LKM----FKLEDVAMGIWIAQ-LKKLGMQVSY 590 (635)
Q Consensus 542 ~G~GYVlSrdla~~I~~~~~-~~-~~~----f~~EDV~iGi~l~~-l~~~gi~v~~ 590 (635)
+|+||+|||.++++|..... .. ... -..||+.+|.|+.. + |++...
T Consensus 149 GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~l---gv~lt~ 201 (252)
T PF02434_consen 149 GGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLL---GVPLTH 201 (252)
T ss_dssp GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT------EEE
T ss_pred CCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcC---Ccceee
Confidence 68999999999999965442 12 222 23799999999998 5 455443
No 12
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.48 E-value=1.4e-13 Score=148.42 Aligned_cols=166 Identities=20% Similarity=0.287 Sum_probs=124.1
Q ss_pred CCCCeeEEEEEecCcCcHHHH-HHHHHHhcCCcccCCCceEEEEEEe-ecCChhhHHHHHHHHhhCCCEEEeeccccCCc
Q 006694 381 LHHRLDLFIGVFSTANNFKRR-MAVRRAWMQYPAVKAGAVAVRFFVG-LHKNQIVNEELWTELQTYRDIQLMPFVDYYSI 458 (635)
Q Consensus 381 ~~~~~~LlI~V~Sap~~~~rR-~aIR~TW~~~~~~~~~~v~v~FvvG-~~~~~~~~~~L~~Ea~~ygDII~~df~DsY~n 458 (635)
...+.++++.|+|.+.+...| .++-+||++... +..|+-- .+.+ -..+. .|..+..|+|++
T Consensus 87 l~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~------~~~f~s~~~s~~----------~~~f~-~v~~~~~~g~~~ 149 (364)
T KOG2246|consen 87 LSRSGRVLCWVLTSPMRHVTRADAVKETWLKRCD------KGIFFSPTLSKD----------DSRFP-TVYYNLPDGYRS 149 (364)
T ss_pred cCCCceEEEEEEecCcCceeehhhhhcccccccC------cceecCccCCCC----------CCcCc-eeeccCCcchHH
Confidence 356789999999998777766 699999998642 2233331 1111 11122 246888999999
Q ss_pred hhHHHHHHHHhhh-c-ccCceEEEeeCCceeecHHHHHHHHHhcCCCCceEEEEeecCCCCcCCCCCCcccCCCCCCCCC
Q 006694 459 ITWKTVAICIFGT-E-VVSAKYVMKTDDDAFVRVDEVLASLNRANVTQGLLYGLINADARPHRSPDSKWYISPEEWPESS 536 (635)
Q Consensus 459 LtlKtl~~~~~~~-~-~~~a~fvmKvDDDtfVnv~~Ll~~L~~~~~~~~ly~G~~~~~~~P~Rd~~~KwyV~~~eyp~~~ 536 (635)
+..||..++++.. + -.+++|++|+|||||+.+++|...|...+++++.|+|+.... .-. .+ |.+
T Consensus 150 ~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~~---~~~-~~--y~~-------- 215 (364)
T KOG2246|consen 150 LWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSKS---YFQ-NG--YSS-------- 215 (364)
T ss_pred HHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecccccc---ccc-cc--ccc--------
Confidence 9999999999875 3 479999999999999999999999999999999999985431 111 12 322
Q ss_pred CCCCCCCCceeeCHHHHHHHHHHhc---c-cCCCC--CcchhhHHHHHHHhh
Q 006694 537 YPPWAHGPGYVVSYDIAKAVAKRHK---G-HLKMF--KLEDVAMGIWIAQLK 582 (635)
Q Consensus 537 YPpY~~G~GYVlSrdla~~I~~~~~---~-~~~~f--~~EDV~iGi~l~~l~ 582 (635)
+|+||++|+.+.+.+++... . ..... ..||+.||.||+.++
T Consensus 216 -----g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~G 262 (364)
T KOG2246|consen 216 -----GGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVG 262 (364)
T ss_pred -----CCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhC
Confidence 89999999999999887752 1 12223 389999999999985
No 13
>PLN03153 hypothetical protein; Provisional
Probab=98.96 E-value=5.6e-09 Score=115.53 Aligned_cols=104 Identities=19% Similarity=0.248 Sum_probs=76.5
Q ss_pred cccCceEEEeeCCceeecHHHHHHHHHhcCCCCceEEEEeecCCCCcCCCCCCcccCCCCCCCCCCCCCCCCCceeeCHH
Q 006694 472 EVVSAKYVMKTDDDAFVRVDEVLASLNRANVTQGLLYGLINADARPHRSPDSKWYISPEEWPESSYPPWAHGPGYVVSYD 551 (635)
Q Consensus 472 ~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~~~~~~ly~G~~~~~~~P~Rd~~~KwyV~~~eyp~~~YPpY~~G~GYVlSrd 551 (635)
..++++|++++|||||+.+++|++.|..++++++.|+|......... ..+. |--.-+|+||+||+.
T Consensus 207 ~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~~qn----~~f~----------~~fA~GGAG~~LSrP 272 (537)
T PLN03153 207 GLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESHSAN----SYFS----------HNMAFGGGGIAISYP 272 (537)
T ss_pred hCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccccccc----cccc----------cccccCCceEEEcHH
Confidence 36899999999999999999999999999999999999875432111 0100 101137999999999
Q ss_pred HHHHHHHHhcccC---CCCCcchhhHHHHHHHhhcCCceecccC
Q 006694 552 IAKAVAKRHKGHL---KMFKLEDVAMGIWIAQLKKLGMQVSYIN 592 (635)
Q Consensus 552 la~~I~~~~~~~~---~~f~~EDV~iGi~l~~l~~~gi~v~~~~ 592 (635)
+++.|........ +...-+|.-+|.|+..+ |+++++..
T Consensus 273 Lae~L~~~~d~C~~rY~~~~~gD~rL~~CL~el---GV~LT~~~ 313 (537)
T PLN03153 273 LAEALSRILDDCLDRYPKLYGSDDRLHACITEL---GVPLSREP 313 (537)
T ss_pred HHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHc---CCCceecC
Confidence 9999887643221 22346899999999976 56665443
No 14
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.00041 Score=76.69 Aligned_cols=198 Identities=16% Similarity=0.207 Sum_probs=121.4
Q ss_pred eeEEEEEecCcCcHHHHHHHHHHhcCCcccCCCceEEEEEEeecCChhhHHHHHHHHhhCCCEEEeeccccCCchhHHHH
Q 006694 385 LDLFIGVFSTANNFKRRMAVRRAWMQYPAVKAGAVAVRFFVGLHKNQIVNEELWTELQTYRDIQLMPFVDYYSIITWKTV 464 (635)
Q Consensus 385 ~~LlI~V~Sap~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~~df~DsY~nLtlKtl 464 (635)
=+|+++|+|.. .---+|-+|=+.. --++.||.+...-. .|.-++..+..|..-..|+.
T Consensus 26 Erl~~aVmte~---tlA~a~NrT~ahh------vprv~~F~~~~~i~-------------~~~a~~~~vs~~d~r~~~~~ 83 (681)
T KOG3708|consen 26 ERLMAAVMTES---TLALAINRTLAHH------VPRVHLFADSSRID-------------NDLAQLTNVSPYDLRGQKTH 83 (681)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHhh------cceeEEeecccccc-------------ccHhhccccCccccCccccH
Confidence 35666777621 4445566666543 23566777765432 22223333444444455665
Q ss_pred H-HHHhhh--cccCceEEEeeCCceeecHHHHHHHHHhcCCCCceEEEEeecCCCCcCCCCCCcccCCCCCCCCCCCCCC
Q 006694 465 A-ICIFGT--EVVSAKYVMKTDDDAFVRVDEVLASLNRANVTQGLLYGLINADARPHRSPDSKWYISPEEWPESSYPPWA 541 (635)
Q Consensus 465 ~-~~~~~~--~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~~~~~~ly~G~~~~~~~P~Rd~~~KwyV~~~eyp~~~YPpY~ 541 (635)
. .+.+.. ..-+++|++-+-|||||+...|++.+...+...++|+|.-.. +-++. .-
T Consensus 84 s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~------~gs~r---------------C~ 142 (681)
T KOG3708|consen 84 SMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAE------DGSGR---------------CR 142 (681)
T ss_pred HHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhhh------CccCc---------------cc
Confidence 3 344433 346899999999999999999999999999999999993211 10111 22
Q ss_pred CCCceeeCHHHHHHHHHHhccc--CCCCCcchhhHHHHHHHhhcCCcee------cccC--CC--c---cc---CCCccc
Q 006694 542 HGPGYVVSYDIAKAVAKRHKGH--LKMFKLEDVAMGIWIAQLKKLGMQV------SYIN--EP--R---VY---NEGCRD 603 (635)
Q Consensus 542 ~G~GYVlSrdla~~I~~~~~~~--~~~f~~EDV~iGi~l~~l~~~gi~v------~~~~--d~--r---f~---~~~C~~ 603 (635)
.|.||++|+.++.+|-.+-+.. .-.-.-.|+.+|.|+.-....|-.. +|.+ +. | +. -+.-+.
T Consensus 143 l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~~At~v~C~~~hQGvrq~s~~~dspgr~~~~~e~~~s~aFr 222 (681)
T KOG3708|consen 143 LDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQDATGVGCKPLHQGVRQYSEREDSPGRHDSIPEWEGSPAFR 222 (681)
T ss_pred cccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHHHhhcCCccchhhhHHhhhHhhcCCCccccchhhcCChHHh
Confidence 5999999999999998876422 2233457899999987543222111 1111 00 0 00 011123
Q ss_pred ceEEEE-cCCHHHHHHHHHHhhc
Q 006694 604 QFVVAH-YQSPREMLCLWQKLKE 625 (635)
Q Consensus 604 ~~i~~H-~~sP~~M~~lW~~l~~ 625 (635)
.-+++| -++|.+|..+++.+.+
T Consensus 223 ~A~tv~pv~~p~d~yrLH~yfsr 245 (681)
T KOG3708|consen 223 SALTVHPVLSPADMYRLHKYFSR 245 (681)
T ss_pred hhhccCccCCHHHHHHHHHHHHH
Confidence 456777 6899999999988765
No 15
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=95.03 E-value=0.25 Score=48.73 Aligned_cols=206 Identities=14% Similarity=0.126 Sum_probs=98.4
Q ss_pred eEEEEEecCcCcHHHHHHHHHHhcCCcccCCCceEEEEEEeecCChhhHHHHHHHHhhCCCE--EEeeccccCCchh--H
Q 006694 386 DLFIGVFSTANNFKRRMAVRRAWMQYPAVKAGAVAVRFFVGLHKNQIVNEELWTELQTYRDI--QLMPFVDYYSIIT--W 461 (635)
Q Consensus 386 ~LlI~V~Sap~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDI--I~~df~DsY~nLt--l 461 (635)
.+.|+|++.-..-.-++.|+.--.+. . .++.++++...+. ....+.+++-.+.|.+. ..+.-. .|.. .
T Consensus 2 ~v~Vvip~~~~~~~l~~~l~sl~~~~-~---~~~~v~vvd~~~~-~~~~~~~~~~~~~~~~~~v~vi~~~---~~~g~~~ 73 (228)
T PF13641_consen 2 RVSVVIPAYNEDDVLRRCLESLLAQD-Y---PRLEVVVVDDGSD-DETAEILRALAARYPRVRVRVIRRP---RNPGPGG 73 (228)
T ss_dssp -EEEE--BSS-HHHHHHHHHHHTTSH-H---HTEEEEEEEE-SS-S-GCTTHHHHHHTTGG-GEEEEE-------HHHHH
T ss_pred EEEEEEEecCCHHHHHHHHHHHHcCC-C---CCeEEEEEECCCC-hHHHHHHHHHHHHcCCCceEEeecC---CCCCcch
Confidence 46777777666556667777665442 1 3466655554433 33334455555666653 322221 2222 3
Q ss_pred HHHHHHHhhhcccCceEEEeeCCceeecHHHHHHHHHhc-CCCCceEEEEeecCCCCcCCC--------CCCcccCCCCC
Q 006694 462 KTVAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLNRA-NVTQGLLYGLINADARPHRSP--------DSKWYISPEEW 532 (635)
Q Consensus 462 Ktl~~~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~-~~~~~ly~G~~~~~~~P~Rd~--------~~KwyV~~~ey 532 (635)
|.-+ +.++......+|++.+|||+.+..+.|...+..+ .+.-..+.|...... .+.. ...|+......
T Consensus 74 k~~a-~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 150 (228)
T PF13641_consen 74 KARA-LNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDN--DRNWLTRLQDLFFARWHLRFRSG 150 (228)
T ss_dssp HHHH-HHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETT--CCCEEEE-TT--S-EETTTS-TT
T ss_pred HHHH-HHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecC--CCCHHHHHHHHHHhhhhhhhhhh
Confidence 4332 3444444569999999999999988888877776 444455556553321 1110 00111100001
Q ss_pred CCCCCC-CCCCCCceeeCHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhcCCceecccCCCcccCCCcccceEEEEcC
Q 006694 533 PESSYP-PWAHGPGYVVSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIAQLKKLGMQVSYINEPRVYNEGCRDQFVVAHYQ 611 (635)
Q Consensus 533 p~~~YP-pY~~G~GYVlSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~~l~~~gi~v~~~~d~rf~~~~C~~~~i~~H~~ 611 (635)
...+. .++.|++.++.+++++.+-.-. . ....||..++.-+.+. |.++.|.. +.++.|.
T Consensus 151 -~~~~~~~~~~G~~~~~rr~~~~~~g~fd--~--~~~~eD~~l~~r~~~~---G~~~~~~~-----------~~~v~~~- 210 (228)
T PF13641_consen 151 -RRALGVAFLSGSGMLFRRSALEEVGGFD--P--FILGEDFDLCLRLRAA---GWRIVYAP-----------DALVYHE- 210 (228)
T ss_dssp --B----S-B--TEEEEEHHHHHHH-S----S--SSSSHHHHHHHHHHHT---T--EEEEE-----------EEEEEE--
T ss_pred -hcccceeeccCcEEEEEHHHHHHhCCCC--C--CCcccHHHHHHHHHHC---CCcEEEEC-----------CcEEEEe-
Confidence 11111 4467999999999999885322 1 4456999998888764 55554422 3345553
Q ss_pred CHHHHHHHHHH
Q 006694 612 SPREMLCLWQK 622 (635)
Q Consensus 612 sP~~M~~lW~~ 622 (635)
.|..+..+|++
T Consensus 211 ~~~~~~~~~~q 221 (228)
T PF13641_consen 211 EPSSLKAFFKQ 221 (228)
T ss_dssp -SSSTHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 44445555544
No 16
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=93.93 E-value=2.2 Score=41.48 Aligned_cols=156 Identities=19% Similarity=0.194 Sum_probs=88.8
Q ss_pred ceEEEEEEeecCChhhHHHHHHHHhhCC--CEEEeeccccCCchhHHHHHHHHhhhcccCceEEEeeCCceeecHHHHHH
Q 006694 418 AVAVRFFVGLHKNQIVNEELWTELQTYR--DIQLMPFVDYYSIITWKTVAICIFGTEVVSAKYVMKTDDDAFVRVDEVLA 495 (635)
Q Consensus 418 ~v~v~FvvG~~~~~~~~~~L~~Ea~~yg--DII~~df~DsY~nLtlKtl~~~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~ 495 (635)
.+.++++...+.+... +.+++-.+.|. ++......... ....|.-. +..+......+|++.+|+|+.+..+.|..
T Consensus 30 ~~eiivVdd~s~d~t~-~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~-~n~g~~~a~~d~i~~~D~D~~~~~~~l~~ 106 (196)
T cd02520 30 KYEILFCVQDEDDPAI-PVVRKLIAKYPNVDARLLIGGEKV-GINPKVNN-LIKGYEEARYDILVISDSDISVPPDYLRR 106 (196)
T ss_pred CeEEEEEeCCCcchHH-HHHHHHHHHCCCCcEEEEecCCcC-CCCHhHHH-HHHHHHhCCCCEEEEECCCceEChhHHHH
Confidence 3677777766655432 33444445555 33223221111 11233322 23344446789999999999998888877
Q ss_pred HHHhcC-CCCceEEEEeecCCCCcCCCCCCcccCCCCCCCCCCCCCCCCCceeeCHHHHHHHHHHhcccCCCCCcchhhH
Q 006694 496 SLNRAN-VTQGLLYGLINADARPHRSPDSKWYISPEEWPESSYPPWAHGPGYVVSYDIAKAVAKRHKGHLKMFKLEDVAM 574 (635)
Q Consensus 496 ~L~~~~-~~~~ly~G~~~~~~~P~Rd~~~KwyV~~~eyp~~~YPpY~~G~GYVlSrdla~~I~~~~~~~~~~f~~EDV~i 574 (635)
.+.... +.-....|. ++.|++.++.+++.+++---. ....+..||..+
T Consensus 107 l~~~~~~~~~~~v~~~-----------------------------~~~g~~~~~r~~~~~~~ggf~--~~~~~~~eD~~l 155 (196)
T cd02520 107 MVAPLMDPGVGLVTCL-----------------------------CAFGKSMALRREVLDAIGGFE--AFADYLAEDYFL 155 (196)
T ss_pred HHHHhhCCCCCeEEee-----------------------------cccCceeeeEHHHHHhccChH--HHhHHHHHHHHH
Confidence 777642 222233332 568999999999998874322 122234699999
Q ss_pred HHHHHHhhcCCceecccCCCcccCCCcccceEEEEcCCHHHHHHHHHH
Q 006694 575 GIWIAQLKKLGMQVSYINEPRVYNEGCRDQFVVAHYQSPREMLCLWQK 622 (635)
Q Consensus 575 Gi~l~~l~~~gi~v~~~~d~rf~~~~C~~~~i~~H~~sP~~M~~lW~~ 622 (635)
+.-+.+. |..+.+..+ ...|...|..+..+|++
T Consensus 156 ~~rl~~~---G~~i~~~~~------------~~~~~~~~~~~~~~~~q 188 (196)
T cd02520 156 GKLIWRL---GYRVVLSPY------------VVMQPLGSTSLASFWRR 188 (196)
T ss_pred HHHHHHc---CCeEEEcch------------heeccCCcccHHHHHHH
Confidence 8777654 444433221 33444555555555554
No 17
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=93.81 E-value=0.89 Score=44.70 Aligned_cols=93 Identities=15% Similarity=0.236 Sum_probs=48.6
Q ss_pred EEEecCcCcHHHHHHHHHHhcCCcccCCCceEEEEEEeecCChhhHHHHHHHHhhCCCEEEe-----eccccCCchhHHH
Q 006694 389 IGVFSTANNFKRRMAVRRAWMQYPAVKAGAVAVRFFVGLHKNQIVNEELWTELQTYRDIQLM-----PFVDYYSIITWKT 463 (635)
Q Consensus 389 I~V~Sap~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~~-----df~DsY~nLtlKt 463 (635)
|.|.|-+...+||+.+.+..... .+.+.||-|.........++..+ |..-... +..-..-.-.+-.
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~------~~~~e~~~Avdg~~l~~~~~~~~---~~~~~~~~~~~~~lt~gEiGC~lSH 74 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL------GINFEFFDAVDGRDLSEDELFRR---YDPELFKKRYGRPLTPGEIGCALSH 74 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc------CCceEEEEeecccccchHHHHHH---hhhhhhhccccccCCcceEeehhhH
Confidence 55778889999999998877643 45677776665442211111111 1111100 0011111112223
Q ss_pred HHHHHhhhcccCceEEEeeCCceeecHH
Q 006694 464 VAICIFGTEVVSAKYVMKTDDDAFVRVD 491 (635)
Q Consensus 464 l~~~~~~~~~~~a~fvmKvDDDtfVnv~ 491 (635)
+.+++-... .+.+|.+-..||+.++.+
T Consensus 75 ~~~w~~~v~-~~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 75 IKAWQRIVD-SGLEYALILEDDVIFDPD 101 (200)
T ss_pred HHHHHHHHH-cCCCeEEEEecccccccc
Confidence 333322221 367899999999999854
No 18
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=93.35 E-value=2 Score=46.90 Aligned_cols=193 Identities=13% Similarity=0.052 Sum_probs=100.5
Q ss_pred CeeEEEEEecCcCcHHHHHHHHHHhcCCcccCCCceEEEEEEeecCChhhHHHHHHHHhhCCC--EEEeeccccCCchhH
Q 006694 384 RLDLFIGVFSTANNFKRRMAVRRAWMQYPAVKAGAVAVRFFVGLHKNQIVNEELWTELQTYRD--IQLMPFVDYYSIITW 461 (635)
Q Consensus 384 ~~~LlI~V~Sap~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygD--II~~df~DsY~nLtl 461 (635)
.+.+-|+|++.-....-.+.|+ +..+... ..+.++|+.+.+.+... +.+++=.+.|.+ |..+. .+.-.....
T Consensus 40 ~p~VSViiP~~nee~~l~~~L~-Sl~~q~Y---p~~EIivvdd~s~D~t~-~iv~~~~~~~p~~~i~~v~-~~~~~G~~~ 113 (373)
T TIGR03472 40 WPPVSVLKPLHGDEPELYENLA-SFCRQDY---PGFQMLFGVQDPDDPAL-AVVRRLRADFPDADIDLVI-DARRHGPNR 113 (373)
T ss_pred CCCeEEEEECCCCChhHHHHHH-HHHhcCC---CCeEEEEEeCCCCCcHH-HHHHHHHHhCCCCceEEEE-CCCCCCCCh
Confidence 3456666665544444445554 3333221 23777776665554332 233333355665 43331 111122234
Q ss_pred HHHHHHHhhhcccCceEEEeeCCceeecHHHHHHHHHhcC-CCCceEEEEeecCCCCcCCCCCC---cccCCCCCCC---
Q 006694 462 KTVAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLNRAN-VTQGLLYGLINADARPHRSPDSK---WYISPEEWPE--- 534 (635)
Q Consensus 462 Ktl~~~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~~-~~~~ly~G~~~~~~~P~Rd~~~K---wyV~~~eyp~--- 534 (635)
|.-+... +....+.+|++.+|+|+.+..+.|...+.... +.-....|... ..+......+ .++....+|.
T Consensus 114 K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~ 190 (373)
T TIGR03472 114 KVSNLIN-MLPHARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYR--GRPVPGFWSRLGAMGINHNFLPSVMV 190 (373)
T ss_pred HHHHHHH-HHHhccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEecccc--CCCCCCHHHHHHHHHhhhhhhHHHHH
Confidence 6544333 33445789999999999999998888877753 22233334211 1111110000 0111111110
Q ss_pred ---CCCCCCCCCCceeeCHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhcCCceecc
Q 006694 535 ---SSYPPWAHGPGYVVSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIAQLKKLGMQVSY 590 (635)
Q Consensus 535 ---~~YPpY~~G~GYVlSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~~l~~~gi~v~~ 590 (635)
..-+.+|.|+++++.+++.+.+--.. .....-.||..+|.-+.+. |..+.+
T Consensus 191 ~~~~~~~~~~~G~~~a~RR~~l~~iGGf~--~~~~~~~ED~~l~~~i~~~---G~~v~~ 244 (373)
T TIGR03472 191 ARALGRARFCFGATMALRRATLEAIGGLA--ALAHHLADDYWLGELVRAL---GLRVVL 244 (373)
T ss_pred HHhccCCccccChhhheeHHHHHHcCChH--HhcccchHHHHHHHHHHHc---CCeEEe
Confidence 01134688999999999999885332 1222335999999888764 555543
No 19
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.71 E-value=4.4 Score=37.04 Aligned_cols=85 Identities=20% Similarity=0.257 Sum_probs=55.5
Q ss_pred cccCceEEEeeCCceeecHHHHHHHHHhcCCCC-ceEEEEeecCCCCcCCCCCCcccCCCCCCCCCCCCCCCCCceeeCH
Q 006694 472 EVVSAKYVMKTDDDAFVRVDEVLASLNRANVTQ-GLLYGLINADARPHRSPDSKWYISPEEWPESSYPPWAHGPGYVVSY 550 (635)
Q Consensus 472 ~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~~~~~-~ly~G~~~~~~~P~Rd~~~KwyV~~~eyp~~~YPpY~~G~GYVlSr 550 (635)
...+.+|++..|||.++..+.+...++...... -..++.. +.|++.++++
T Consensus 71 ~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~ 121 (166)
T cd04186 71 REAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK-----------------------------VSGAFLLVRR 121 (166)
T ss_pred hhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-----------------------------CceeeEeeeH
Confidence 334899999999999999888887777532222 2222221 5899999999
Q ss_pred HHHHHHHHHhcccCCCCCcchhhHHHHHHHhhcCCceecc
Q 006694 551 DIAKAVAKRHKGHLKMFKLEDVAMGIWIAQLKKLGMQVSY 590 (635)
Q Consensus 551 dla~~I~~~~~~~~~~f~~EDV~iGi~l~~l~~~gi~v~~ 590 (635)
++++.+-.-. ... ....||..+..-+... |.++.+
T Consensus 122 ~~~~~~~~~~-~~~-~~~~eD~~~~~~~~~~---g~~i~~ 156 (166)
T cd04186 122 EVFEEVGGFD-EDF-FLYYEDVDLCLRARLA---GYRVLY 156 (166)
T ss_pred HHHHHcCCCC-hhh-hccccHHHHHHHHHHc---CCeEEE
Confidence 9988764221 111 1256899887766543 555543
No 20
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.66 E-value=2 Score=41.50 Aligned_cols=154 Identities=9% Similarity=-0.013 Sum_probs=80.6
Q ss_pred ceEEEEEEeecCChhhHHHHHHHHhhCC-CEEEeeccccCCchhHHHHHHHHhhhcccCceEEEeeCCceeecHHHHHHH
Q 006694 418 AVAVRFFVGLHKNQIVNEELWTELQTYR-DIQLMPFVDYYSIITWKTVAICIFGTEVVSAKYVMKTDDDAFVRVDEVLAS 496 (635)
Q Consensus 418 ~v~v~FvvG~~~~~~~~~~L~~Ea~~yg-DII~~df~DsY~nLtlKtl~~~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~ 496 (635)
.+.++++-..+.+. ....+++-+++|. .+......... ... ..+..+....+.+|++..|+|.++..+.|...
T Consensus 27 ~~eiiVvddgS~d~-t~~~~~~~~~~~~~~~~~~~~~~~~-G~~----~~~n~g~~~~~g~~v~~ld~Dd~~~~~~l~~~ 100 (214)
T cd04196 27 NDELIISDDGSTDG-TVEIIKEYIDKDPFIIILIRNGKNL-GVA----RNFESLLQAADGDYVFFCDQDDIWLPDKLERL 100 (214)
T ss_pred CeEEEEEeCCCCCC-cHHHHHHHHhcCCceEEEEeCCCCc-cHH----HHHHHHHHhCCCCEEEEECCCcccChhHHHHH
Confidence 56676665555443 3333444444554 33333333222 111 12223444568999999999999988888887
Q ss_pred HHh-cC-CCCceEEEEeec--CCCCcCCCCCCccc----CCCCCCCCCCCCCCCCCceeeCHHHHHHHHHHhcccCCCCC
Q 006694 497 LNR-AN-VTQGLLYGLINA--DARPHRSPDSKWYI----SPEEWPESSYPPWAHGPGYVVSYDIAKAVAKRHKGHLKMFK 568 (635)
Q Consensus 497 L~~-~~-~~~~ly~G~~~~--~~~P~Rd~~~KwyV----~~~eyp~~~YPpY~~G~GYVlSrdla~~I~~~~~~~~~~f~ 568 (635)
++. .. +....+.|.... ....... ...+.. +...+.......++.|+++++.+++++++..-. ... ..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~--~~ 176 (214)
T cd04196 101 LKAFLKDDKPLLVYSDLELVDENGNPIG-ESFFEYQKIKPGTSFNNLLFQNVVTGCTMAFNRELLELALPFP-DAD--VI 176 (214)
T ss_pred HHHHhcCCCceEEecCcEEECCCCCCcc-cccccccccCCccCHHHHHHhCccCCceeeEEHHHHHhhcccc-ccc--cc
Confidence 775 22 333344453321 1111110 011100 000111112235668999999999999875533 111 56
Q ss_pred cchhhHHHHHHHh
Q 006694 569 LEDVAMGIWIAQL 581 (635)
Q Consensus 569 ~EDV~iGi~l~~l 581 (635)
.||.++...+...
T Consensus 177 ~~D~~~~~~~~~~ 189 (214)
T cd04196 177 MHDWWLALLASAF 189 (214)
T ss_pred cchHHHHHHHHHc
Confidence 8898887766653
No 21
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.44 E-value=9 Score=37.26 Aligned_cols=152 Identities=13% Similarity=0.041 Sum_probs=79.2
Q ss_pred eEEEEEEeecCChhhHHHHH-HHHhhCCCEEEeeccccCCchhHHHHHHHHhhhcccCceEEEeeCCceeecHHHHHHHH
Q 006694 419 VAVRFFVGLHKNQIVNEELW-TELQTYRDIQLMPFVDYYSIITWKTVAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASL 497 (635)
Q Consensus 419 v~v~FvvG~~~~~~~~~~L~-~Ea~~ygDII~~df~DsY~nLtlKtl~~~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L 497 (635)
+.++.+-+.+.+ .....++ .....+..+..++... -.+.. |. ..+.++......+|++.+|+|+.+..+.|...+
T Consensus 29 ~eiivvdd~s~d-~t~~~~~~~~~~~~~~v~~~~~~~-~~~~g-~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~ 104 (229)
T cd04192 29 FEVILVDDHSTD-GTVQILEFAAAKPNFQLKILNNSR-VSISG-KK-NALTTAIKAAKGDWIVTTDADCVVPSNWLLTFV 104 (229)
T ss_pred eEEEEEcCCCCc-ChHHHHHHHHhCCCcceEEeeccC-cccch-hH-HHHHHHHHHhcCCEEEEECCCcccCHHHHHHHH
Confidence 556555444433 2333343 2222234455555444 22222 22 123445555678999999999999988888877
Q ss_pred HhcC-CCCceEEEEeecCCCCcCCCCCC-----cccCC---CCCCCCCCCCCCCCCceeeCHHHHHHHHHHhcccCCCCC
Q 006694 498 NRAN-VTQGLLYGLINADARPHRSPDSK-----WYISP---EEWPESSYPPWAHGPGYVVSYDIAKAVAKRHKGHLKMFK 568 (635)
Q Consensus 498 ~~~~-~~~~ly~G~~~~~~~P~Rd~~~K-----wyV~~---~eyp~~~YPpY~~G~GYVlSrdla~~I~~~~~~~~~~f~ 568 (635)
.... .....+.|..... .+ ...... +.... .......+|..+.|+++.+++++.+++---. ......
T Consensus 105 ~~~~~~~~~~v~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf~--~~~~~~ 180 (229)
T cd04192 105 AFIQKEQIGLVAGPVIYF-KG-KSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGFE--GNDHIA 180 (229)
T ss_pred HHhhcCCCcEEeeeeeec-CC-ccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCCc--cccccc
Confidence 7543 3334566654332 11 000000 00000 0012234566778999999999998874321 122345
Q ss_pred cchhhHHHHH
Q 006694 569 LEDVAMGIWI 578 (635)
Q Consensus 569 ~EDV~iGi~l 578 (635)
.||..++.-+
T Consensus 181 ~eD~~~~~~~ 190 (229)
T cd04192 181 SGDDELLLAK 190 (229)
T ss_pred cCCHHHHHHH
Confidence 6777765543
No 22
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=91.38 E-value=4.1 Score=40.22 Aligned_cols=157 Identities=17% Similarity=0.124 Sum_probs=80.9
Q ss_pred ceEEEEEEeecCChhhHHHHHHHHhhCCCEEEeeccccCCchhHHHHHHHHhhhcccCceEEEeeCCceeecHHHHHHHH
Q 006694 418 AVAVRFFVGLHKNQIVNEELWTELQTYRDIQLMPFVDYYSIITWKTVAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASL 497 (635)
Q Consensus 418 ~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~~df~DsY~nLtlKtl~~~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L 497 (635)
...+.++...+.++ ....+ ++...+..+.+.. .+ + .-|.-+ +..+....+.+|++.+|+|+.+..+.|.+.+
T Consensus 28 ~~eiivvdd~s~d~-~~~~l-~~~~~~~~~~v~~-~~---~-~g~~~a-~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l~ 99 (235)
T cd06434 28 PLEIIVVTDGDDEP-YLSIL-SQTVKYGGIFVIT-VP---H-PGKRRA-LAEGIRHVTTDIVVLLDSDTVWPPNALPEML 99 (235)
T ss_pred CCEEEEEeCCCChH-HHHHH-HhhccCCcEEEEe-cC---C-CChHHH-HHHHHHHhCCCEEEEECCCceeChhHHHHHH
Confidence 34555555444433 33333 3455666666554 11 1 123322 2333344589999999999999999988888
Q ss_pred HhcC-CCCceEEEEeecCCCCcCCCCCCc------ccCC-------CCCCCCCCCCCCCCCceeeCHHHHHHHHHHhc--
Q 006694 498 NRAN-VTQGLLYGLINADARPHRSPDSKW------YISP-------EEWPESSYPPWAHGPGYVVSYDIAKAVAKRHK-- 561 (635)
Q Consensus 498 ~~~~-~~~~ly~G~~~~~~~P~Rd~~~Kw------yV~~-------~eyp~~~YPpY~~G~GYVlSrdla~~I~~~~~-- 561 (635)
+... +.-....|..... ....+.| +... ...... --.++.|++.++.++++..+.-...
T Consensus 100 ~~~~~~~v~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~~~rr~~l~~~~~~~~~~ 174 (235)
T cd06434 100 KPFEDPKVGGVGTNQRIL----RPRDSKWSFLAAEYLERRNEEIRAAMSYDG-GVPCLSGRTAAYRTEILKDFLFLEEFT 174 (235)
T ss_pred HhccCCCEeEEcCceEee----cCcccHHHHHHHHHHHHHHHHHHHHHhhCC-CEEEccCcHHHHHHHHHhhhhhHHHhh
Confidence 8764 2222333322211 1001111 0000 000001 0124568888889988877643321
Q ss_pred ----ccCCCCCcchhhHHHHHHHhhcCCceecc
Q 006694 562 ----GHLKMFKLEDVAMGIWIAQLKKLGMQVSY 590 (635)
Q Consensus 562 ----~~~~~f~~EDV~iGi~l~~l~~~gi~v~~ 590 (635)
...+...-||..++.-+.+. |..+.|
T Consensus 175 ~~~~~~~~~~~~eD~~l~~~~~~~---g~~~~~ 204 (235)
T cd06434 175 NETFMGRRLNAGDDRFLTRYVLSH---GYKTVY 204 (235)
T ss_pred hhhhcCCCCCcCchHHHHHHHHHC---CCeEEE
Confidence 11233466999988776654 455544
No 23
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=89.62 E-value=1.9 Score=39.05 Aligned_cols=156 Identities=12% Similarity=0.094 Sum_probs=75.4
Q ss_pred EEEEecCcCcHHHH-HHHHHHhcCCcccCCCceEEEEEEeecCChhhHHHHHHHHhhCCCEEEeeccccCCchhHHHHHH
Q 006694 388 FIGVFSTANNFKRR-MAVRRAWMQYPAVKAGAVAVRFFVGLHKNQIVNEELWTELQTYRDIQLMPFVDYYSIITWKTVAI 466 (635)
Q Consensus 388 lI~V~Sap~~~~rR-~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~~df~DsY~nLtlKtl~~ 466 (635)
+|.+.-.+....+- ..+++. . ...+.+.++-..+ ++.....+++-.+....+..+...+.. .+. ..
T Consensus 3 vip~~n~~~~l~~~l~sl~~q--~-----~~~~eiivvdd~s-~d~~~~~~~~~~~~~~~i~~i~~~~n~-g~~----~~ 69 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQ--T-----DPDFEIIVVDDGS-TDETEEILEEYAESDPNIRYIRNPENL-GFS----AA 69 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHH--S-----GCEEEEEEEECS--SSSHHHHHHHHHCCSTTEEEEEHCCCS-HHH----HH
T ss_pred EEEeeCCHHHHHHHHHHHhhc--c-----CCCEEEEEecccc-ccccccccccccccccccccccccccc-ccc----cc
Confidence 33344444444444 446666 1 2245565554444 334444444444435566666555443 221 22
Q ss_pred HHhhhcccCceEEEeeCCceeecHHHHHHHHHhcCC-CCceEEEEeecCCCCcCCCCCCc---ccCCC-----CCCCCCC
Q 006694 467 CIFGTEVVSAKYVMKTDDDAFVRVDEVLASLNRANV-TQGLLYGLINADARPHRSPDSKW---YISPE-----EWPESSY 537 (635)
Q Consensus 467 ~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~~~-~~~ly~G~~~~~~~P~Rd~~~Kw---yV~~~-----eyp~~~Y 537 (635)
+..+......+|++.+|||.++..+.|...++.... .....+|.........+...... +.... ......-
T Consensus 70 ~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (169)
T PF00535_consen 70 RNRGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWK 149 (169)
T ss_dssp HHHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTT
T ss_pred ccccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCC
Confidence 333444455669999999999987765555554432 33455555432211111100000 00000 0112233
Q ss_pred CCCCCCCceeeCHHHHHHH
Q 006694 538 PPWAHGPGYVVSYDIAKAV 556 (635)
Q Consensus 538 PpY~~G~GYVlSrdla~~I 556 (635)
-.++.|++.++++++.+++
T Consensus 150 ~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 150 ISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp SSEESSSCEEEEEHHHHHC
T ss_pred cccccccEEEEEHHHHHhh
Confidence 4577899999999998765
No 24
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=89.57 E-value=2.1 Score=39.54 Aligned_cols=115 Identities=19% Similarity=0.148 Sum_probs=65.0
Q ss_pred EEEecCcCcHHHHHHHHHHhcCCcccCCCceEEEEEEeecCChhhHHHHHHHHhhCCCEE-EeeccccCCchhHHHHHHH
Q 006694 389 IGVFSTANNFKRRMAVRRAWMQYPAVKAGAVAVRFFVGLHKNQIVNEELWTELQTYRDIQ-LMPFVDYYSIITWKTVAIC 467 (635)
Q Consensus 389 I~V~Sap~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDII-~~df~DsY~nLtlKtl~~~ 467 (635)
|.|.+-+...+||..+++.-... .+.+.||-|..........+......+.... ..+.....---.+-.+.++
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~------~~~~~~~~Avd~~~~~~~~~~~~~~~~~~~~~~~~l~~gEiGC~lSH~~~w 75 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAAL------GLDFEFFDAVDGKDLSEEELAALYDALFLPRYGRPLTPGEIGCFLSHYKLW 75 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc------CCCeEEEeccccccCCHHHHHHHhHHHhhhhcCCCCChhhHHHHHHHHHHH
Confidence 45678888899999999855442 3566777666544322222222211100000 0001111111111122222
Q ss_pred HhhhcccCceEEEeeCCceeecHHHHHHHHHhcCCCCceEEEEeecCCCCcCCCCCCcccCCCCCCCCCCCCCCCCCcee
Q 006694 468 IFGTEVVSAKYVMKTDDDAFVRVDEVLASLNRANVTQGLLYGLINADARPHRSPDSKWYISPEEWPESSYPPWAHGPGYV 547 (635)
Q Consensus 468 ~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~~~~~~ly~G~~~~~~~P~Rd~~~KwyV~~~eyp~~~YPpY~~G~GYV 547 (635)
+-... .+.++.+-..||+.+..+ +..||+
T Consensus 76 ~~~~~-~~~~~alIlEDDv~~~~~--------------------------------------------------~~~~Y~ 104 (128)
T cd06532 76 QKIVE-SNLEYALILEDDAILDPD--------------------------------------------------GTAGYL 104 (128)
T ss_pred HHHHH-cCCCeEEEEccCcEECCC--------------------------------------------------CceEEE
Confidence 21111 366899999999999766 667999
Q ss_pred eCHHHHHHHHHHh
Q 006694 548 VSYDIAKAVAKRH 560 (635)
Q Consensus 548 lSrdla~~I~~~~ 560 (635)
+|+..|+++++..
T Consensus 105 vs~~~A~~ll~~~ 117 (128)
T cd06532 105 VSRKGAKKLLAAL 117 (128)
T ss_pred eCHHHHHHHHHhC
Confidence 9999999999986
No 25
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=88.96 E-value=22 Score=38.99 Aligned_cols=188 Identities=13% Similarity=0.055 Sum_probs=93.1
Q ss_pred CeeEEEEEecCcCcHHHHHHHHHHhcCCcccCCCceEEEEEEeecCChhhHHHHHHH-HhhCC---CEEEeeccccCCch
Q 006694 384 RLDLFIGVFSTANNFKRRMAVRRAWMQYPAVKAGAVAVRFFVGLHKNQIVNEELWTE-LQTYR---DIQLMPFVDYYSII 459 (635)
Q Consensus 384 ~~~LlI~V~Sap~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~E-a~~yg---DII~~df~DsY~nL 459 (635)
.+.+-|+|++--....-.+.|+.--.+. . ...+.+.++-+.+.|... ++.++ .+.|. .+......+.-.+-
T Consensus 39 ~p~VSVIIpa~Ne~~~L~~~L~sL~~q~-y--p~~~eIIVVDd~StD~T~--~i~~~~~~~~~~~~~i~vi~~~~~~~g~ 113 (384)
T TIGR03469 39 WPAVVAVVPARNEADVIGECVTSLLEQD-Y--PGKLHVILVDDHSTDGTA--DIARAAARAYGRGDRLTVVSGQPLPPGW 113 (384)
T ss_pred CCCEEEEEecCCcHhHHHHHHHHHHhCC-C--CCceEEEEEeCCCCCcHH--HHHHHHHHhcCCCCcEEEecCCCCCCCC
Confidence 4456666665543333334444333331 1 124667666655555332 22233 23343 45555433222222
Q ss_pred hHHHHH---HHHhhhc-ccCceEEEeeCCceeecHHHHHHHHHhcCCCC-ceEEEEeecCCCCcCCCCCCcccCC-----
Q 006694 460 TWKTVA---ICIFGTE-VVSAKYVMKTDDDAFVRVDEVLASLNRANVTQ-GLLYGLINADARPHRSPDSKWYISP----- 529 (635)
Q Consensus 460 tlKtl~---~~~~~~~-~~~a~fvmKvDDDtfVnv~~Ll~~L~~~~~~~-~ly~G~~~~~~~P~Rd~~~KwyV~~----- 529 (635)
.-|.-+ +++.+.. .++.+|++.+|+|+.+..+.+.+.+......+ .+..|...... .....+..++.
T Consensus 114 ~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~---~~~~~~~~~~~~~~~~ 190 (384)
T TIGR03469 114 SGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRC---ESFWEKLLIPAFVFFF 190 (384)
T ss_pred cchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccC---CCHHHHHHHHHHHHHH
Confidence 344332 3344332 34489999999999999888888776543222 33333221100 00000100000
Q ss_pred -CCCC------CCCCCCCCCCCceeeCHHHHHHHHHHhcccCCCCCcchhhHHHHHHHh
Q 006694 530 -EEWP------ESSYPPWAHGPGYVVSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIAQL 581 (635)
Q Consensus 530 -~eyp------~~~YPpY~~G~GYVlSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~~l 581 (635)
..|| ......++.|++.++++++.+++--.. .......||+.++.-+.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~G~~~lirr~~~~~vGGf~--~~~~~~~ED~~L~~r~~~~ 247 (384)
T TIGR03469 191 QKLYPFRWVNDPRRRTAAAAGGCILIRREALERIGGIA--AIRGALIDDCTLAAAVKRS 247 (384)
T ss_pred HHhcchhhhcCCCccceeecceEEEEEHHHHHHcCCHH--HHhhCcccHHHHHHHHHHc
Confidence 0011 011224567999999999999883221 1112347999999888764
No 26
>PRK11204 N-glycosyltransferase; Provisional
Probab=88.76 E-value=21 Score=39.14 Aligned_cols=188 Identities=12% Similarity=0.039 Sum_probs=98.5
Q ss_pred CCeeEEEEEecCcCcHHHHHHHHHHhcCCcccCCCceEEEEEEeecCChhhHHHHHHHHhhCCCEEEeeccccCCchhHH
Q 006694 383 HRLDLFIGVFSTANNFKRRMAVRRAWMQYPAVKAGAVAVRFFVGLHKNQIVNEELWTELQTYRDIQLMPFVDYYSIITWK 462 (635)
Q Consensus 383 ~~~~LlI~V~Sap~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~~df~DsY~nLtlK 462 (635)
..+.+-|+|++--+...-++.|+.--.+ ......+ +++...++++..+.+++..+.|..+...+.. .|.. |
T Consensus 52 ~~p~vsViIp~yne~~~i~~~l~sl~~q----~yp~~ei-iVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~---~n~G-k 122 (420)
T PRK11204 52 EYPGVSILVPCYNEGENVEETISHLLAL----RYPNYEV-IAINDGSSDNTGEILDRLAAQIPRLRVIHLA---ENQG-K 122 (420)
T ss_pred CCCCEEEEEecCCCHHHHHHHHHHHHhC----CCCCeEE-EEEECCCCccHHHHHHHHHHhCCcEEEEEcC---CCCC-H
Confidence 3456677776654433333444332222 1123444 3444444444445555556667767655433 3332 4
Q ss_pred HHHHHHhhhcccCceEEEeeCCceeecHHHHHHHHHhc--CCCCceEEEEeecCCCCcCCCCCCcccC--CCCCC-----
Q 006694 463 TVAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLNRA--NVTQGLLYGLINADARPHRSPDSKWYIS--PEEWP----- 533 (635)
Q Consensus 463 tl~~~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~--~~~~~ly~G~~~~~~~P~Rd~~~KwyV~--~~eyp----- 533 (635)
.- ++..+....+.+|++..|+|+.+..+.|.+.++.. ++.-..+.|... .++.. .|.-. ..+|.
T Consensus 123 a~-aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~-----~~~~~-~~~~~~~~~~~~~~~~~ 195 (420)
T PRK11204 123 AN-ALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPR-----IRNRS-TLLGRIQVGEFSSIIGL 195 (420)
T ss_pred HH-HHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCce-----eccch-hHHHHHHHHHHHHhhhH
Confidence 32 34445455688999999999999999888877765 222223333211 11110 11000 00110
Q ss_pred ----CC--CCCCCCCCCceeeCHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhcCCceecccCC
Q 006694 534 ----ES--SYPPWAHGPGYVVSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIAQLKKLGMQVSYINE 593 (635)
Q Consensus 534 ----~~--~YPpY~~G~GYVlSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~~l~~~gi~v~~~~d 593 (635)
.. ..+..++|++.+++++++.++---. ...-.||+-++.-+.+ .|.++.|..+
T Consensus 196 ~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~~----~~~~~ED~~l~~rl~~---~G~~i~~~p~ 254 (420)
T PRK11204 196 IKRAQRVYGRVFTVSGVITAFRKSALHEVGYWS----TDMITEDIDISWKLQL---RGWDIRYEPR 254 (420)
T ss_pred HHHHHHHhCCceEecceeeeeeHHHHHHhCCCC----CCcccchHHHHHHHHH---cCCeEEeccc
Confidence 00 1122347889999999988763211 2234699999887764 3666666543
No 27
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=88.02 E-value=12 Score=33.68 Aligned_cols=90 Identities=10% Similarity=-0.001 Sum_probs=48.6
Q ss_pred HhhhcccCceEEEeeCCceeecHHHHHHHHHhcC--CCCceEEEEeecCCCC---cCCCCC-C---cccCCCCC-CCCCC
Q 006694 468 IFGTEVVSAKYVMKTDDDAFVRVDEVLASLNRAN--VTQGLLYGLINADARP---HRSPDS-K---WYISPEEW-PESSY 537 (635)
Q Consensus 468 ~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~~--~~~~ly~G~~~~~~~P---~Rd~~~-K---wyV~~~ey-p~~~Y 537 (635)
.++....+.+|++.+|+|.++..+.|...+.... +.-..+.|........ ...... + ++.....+ ....+
T Consensus 71 n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
T cd06423 71 NAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSALGG 150 (180)
T ss_pred HHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhheecc
Confidence 3444445899999999999998777776644432 2223444444322111 100000 0 00000000 11234
Q ss_pred CCCCCCCceeeCHHHHHHHH
Q 006694 538 PPWAHGPGYVVSYDIAKAVA 557 (635)
Q Consensus 538 PpY~~G~GYVlSrdla~~I~ 557 (635)
..++.|.+++++++++.++-
T Consensus 151 ~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 151 VLVLSGAFGAFRREALREVG 170 (180)
T ss_pred eeecCchHHHHHHHHHHHhC
Confidence 56778999999999888764
No 28
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=87.91 E-value=15 Score=36.69 Aligned_cols=188 Identities=12% Similarity=0.055 Sum_probs=91.0
Q ss_pred CCeeEEEEEecCcCcHHHHHHHHHHhcCCcccCCCceEEEEEEeecCChhhHHHHHHHHhhCCCEEEeeccccCCchhHH
Q 006694 383 HRLDLFIGVFSTANNFKRRMAVRRAWMQYPAVKAGAVAVRFFVGLHKNQIVNEELWTELQTYRDIQLMPFVDYYSIITWK 462 (635)
Q Consensus 383 ~~~~LlI~V~Sap~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~~df~DsY~nLtlK 462 (635)
....+-|+|++--....-...|+.-..+.. ....+.++++...+.+. ....+.+..+. .+....-.+ |.. |
T Consensus 27 ~~~~isVvip~~n~~~~l~~~l~si~~q~~--~~~~~eiivvdd~s~d~-t~~~~~~~~~~--~v~~i~~~~---~~g-~ 97 (251)
T cd06439 27 YLPTVTIIIPAYNEEAVIEAKLENLLALDY--PRDRLEIIVVSDGSTDG-TAEIAREYADK--GVKLLRFPE---RRG-K 97 (251)
T ss_pred CCCEEEEEEecCCcHHHHHHHHHHHHhCcC--CCCcEEEEEEECCCCcc-HHHHHHHHhhC--cEEEEEcCC---CCC-h
Confidence 344566666665544444555665555422 11225555555444332 22333322222 344433222 211 2
Q ss_pred HHHHHHhhhcccCceEEEeeCCceeecHHHHHHHHHhcC-CCCceEEEEeecCCCCcCCCCCCcccCCC----CCC-CCC
Q 006694 463 TVAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLNRAN-VTQGLLYGLINADARPHRSPDSKWYISPE----EWP-ESS 536 (635)
Q Consensus 463 tl~~~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~~-~~~~ly~G~~~~~~~P~Rd~~~KwyV~~~----eyp-~~~ 536 (635)
.- .+..+......+|++.+|+|+++..+.|.+.+.... +.-....|................+.... .+. ...
T Consensus 98 ~~-a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (251)
T cd06439 98 AA-ALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAESRLG 176 (251)
T ss_pred HH-HHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHHHhcC
Confidence 22 233333344569999999999999777777777754 23345555543321110000011100000 000 111
Q ss_pred CCCCCCCCceeeCHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhcCCceecc
Q 006694 537 YPPWAHGPGYVVSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIAQLKKLGMQVSY 590 (635)
Q Consensus 537 YPpY~~G~GYVlSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~~l~~~gi~v~~ 590 (635)
....+.|+++.+.+++.. .. ......||..++.-+.+. |.++.+
T Consensus 177 ~~~~~~g~~~~~rr~~~~----~~---~~~~~~eD~~l~~~~~~~---G~~~~~ 220 (251)
T cd06439 177 STVGANGAIYAIRRELFR----PL---PADTINDDFVLPLRIARQ---GYRVVY 220 (251)
T ss_pred CeeeecchHHHhHHHHhc----CC---CcccchhHHHHHHHHHHc---CCeEEe
Confidence 234467888878877666 11 122346999988777654 444443
No 29
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=87.86 E-value=3.1 Score=43.22 Aligned_cols=195 Identities=10% Similarity=0.049 Sum_probs=101.9
Q ss_pred EEEecCcCcHH-HHHHHHHHhcCCccc-CCCceEEEEEEeecCChhhHHH----HHHHHhhCCCEEEeeccccCCchhHH
Q 006694 389 IGVFSTANNFK-RRMAVRRAWMQYPAV-KAGAVAVRFFVGLHKNQIVNEE----LWTELQTYRDIQLMPFVDYYSIITWK 462 (635)
Q Consensus 389 I~V~Sap~~~~-rR~aIR~TW~~~~~~-~~~~v~v~FvvG~~~~~~~~~~----L~~Ea~~ygDII~~df~DsY~nLtlK 462 (635)
|+|++--...+ -...++.....-... ...++.+ |++..+.++++... +.+=.+++..-+.+-+.....|.-+|
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI-~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~K 81 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDF-FILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGRK 81 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEE-EEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCcc
Confidence 56666655555 566677665310000 0135667 88877766543221 11111223333333444455566667
Q ss_pred HHHHHHhhhcc-cCceEEEeeCCceeecHHHHHHHHHhcCCCCceEEEEeecCCCCcCCCCC---Ccc-------c----
Q 006694 463 TVAICIFGTEV-VSAKYVMKTDDDAFVRVDEVLASLNRANVTQGLLYGLINADARPHRSPDS---KWY-------I---- 527 (635)
Q Consensus 463 tl~~~~~~~~~-~~a~fvmKvDDDtfVnv~~Ll~~L~~~~~~~~ly~G~~~~~~~P~Rd~~~---Kwy-------V---- 527 (635)
+-.+-.+.... .+.+|++-.|.|+.+..+.|...+..+..... +|-+...... .+..+ ++. .
T Consensus 82 ag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~--vg~vq~~~~~-~n~~~~~~~~~~~~~~~~~~~~~ 158 (254)
T cd04191 82 AGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR--AGIIQTAPKL-IGAETLFARLQQFANRLYGPVFG 158 (254)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC--EEEEeCCcee-ECCCCHHHHHHHHHHHHHHHHHH
Confidence 76544443322 47799999999999999999988876531111 2332211111 11111 110 0
Q ss_pred -CCCCCCCCCCCCCCCCCceeeCHHHHHHHHHHhc----ccC-CCCCcchhhHHHHHHHhhcCCceecccC
Q 006694 528 -SPEEWPESSYPPWAHGPGYVVSYDIAKAVAKRHK----GHL-KMFKLEDVAMGIWIAQLKKLGMQVSYIN 592 (635)
Q Consensus 528 -~~~eyp~~~YPpY~~G~GYVlSrdla~~I~~~~~----~~~-~~f~~EDV~iGi~l~~l~~~gi~v~~~~ 592 (635)
....|.. .-.+|.|...++.++++..+..... ... ...-.||..+|+.+... |..+.|..
T Consensus 159 ~~~~~~~~--~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~---G~ri~~~~ 224 (254)
T cd04191 159 RGLAAWQG--GEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRA---GWEVRLAP 224 (254)
T ss_pred HHHHHhcC--CccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHc---CCEEEEcc
Confidence 0001111 1135679999999998877532110 111 12357999999988754 55555543
No 30
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=87.53 E-value=8.7 Score=38.04 Aligned_cols=177 Identities=12% Similarity=0.112 Sum_probs=89.4
Q ss_pred ceEEEEEEeecCChhhHHHHHHHHhhCC-CEEEeeccccCCchhHHHHHHHHhhhcc--cCceEEEeeCCceeecHHHHH
Q 006694 418 AVAVRFFVGLHKNQIVNEELWTELQTYR-DIQLMPFVDYYSIITWKTVAICIFGTEV--VSAKYVMKTDDDAFVRVDEVL 494 (635)
Q Consensus 418 ~v~v~FvvG~~~~~~~~~~L~~Ea~~yg-DII~~df~DsY~nLtlKtl~~~~~~~~~--~~a~fvmKvDDDtfVnv~~Ll 494 (635)
.+.++++-+.+.+......+++=.++++ ++..+... .|...|. .++.++... .+.+|++..|+|+.+..+.|.
T Consensus 28 ~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~---~~~G~~~-~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~ 103 (236)
T cd06435 28 NFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVE---PLPGAKA-GALNYALERTAPDAEIIAVIDADYQVEPDWLK 103 (236)
T ss_pred CcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcC---CCCCCch-HHHHHHHHhcCCCCCEEEEEcCCCCcCHHHHH
Confidence 4666555555555443222322222333 45443322 2223232 223444332 247999999999999999998
Q ss_pred HHHHhcCCCC-ceEEEEeecCCCCcCCCCCCcccCC--CCC--------C--CCCCCCCCCCCceeeCHHHHHHHHHHhc
Q 006694 495 ASLNRANVTQ-GLLYGLINADARPHRSPDSKWYISP--EEW--------P--ESSYPPWAHGPGYVVSYDIAKAVAKRHK 561 (635)
Q Consensus 495 ~~L~~~~~~~-~ly~G~~~~~~~P~Rd~~~KwyV~~--~ey--------p--~~~YPpY~~G~GYVlSrdla~~I~~~~~ 561 (635)
+.+....... .++.|.. ..++....++... ..| + ...--.++.|++.+++++++..+---.
T Consensus 104 ~l~~~~~~~~~~~v~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~iGgf~- 177 (236)
T cd06435 104 RLVPIFDDPRVGFVQAPQ-----DYRDGEESLFKRMCYAEYKGFFDIGMVSRNERNAIIQHGTMCLIRRSALDDVGGWD- 177 (236)
T ss_pred HHHHHhcCCCeeEEecCc-----cccCCCccHHHHHHhHHHHHHHHHHhccccccCceEEecceEEEEHHHHHHhCCCC-
Confidence 8887754222 2222211 1111111111100 000 0 000012567999999999998873221
Q ss_pred ccCCCCCcchhhHHHHHHHhhcCCceecccCCCcccCCCcccceEEEEcCCHHHHHHHHHH
Q 006694 562 GHLKMFKLEDVAMGIWIAQLKKLGMQVSYINEPRVYNEGCRDQFVVAHYQSPREMLCLWQK 622 (635)
Q Consensus 562 ~~~~~f~~EDV~iGi~l~~l~~~gi~v~~~~d~rf~~~~C~~~~i~~H~~sP~~M~~lW~~ 622 (635)
..+..||.-++.=+.+. |..+.+.++ ...|...|..+..++++
T Consensus 178 ---~~~~~eD~dl~~r~~~~---G~~~~~~~~------------~~~~~~~~~~~~~~~~q 220 (236)
T cd06435 178 ---EWCITEDSELGLRMHEA---GYIGVYVAQ------------SYGHGLIPDTFEAFKKQ 220 (236)
T ss_pred ---CccccchHHHHHHHHHC---CcEEEEcch------------hhccCcCcccHHHHHHH
Confidence 12347999988776654 555554432 22345666666655554
No 31
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=87.40 E-value=7.2 Score=37.60 Aligned_cols=88 Identities=15% Similarity=0.099 Sum_probs=54.8
Q ss_pred HHHhhhcccCceEEEeeCCceeecHHHHHHHHHhcC-CCCceEEEEeecCCCCcCCCCCCcccCCCCCCCCCCCCCCCCC
Q 006694 466 ICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLNRAN-VTQGLLYGLINADARPHRSPDSKWYISPEEWPESSYPPWAHGP 544 (635)
Q Consensus 466 ~~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~~-~~~~ly~G~~~~~~~P~Rd~~~KwyV~~~eyp~~~YPpY~~G~ 544 (635)
++.++. ..+.+|++..|||..+..+.+...++... +.-..+.|..... .+ .+.
T Consensus 71 ~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-------~~------------------~~~ 124 (202)
T cd04185 71 GVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDP-------DG------------------SFV 124 (202)
T ss_pred HHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcC-------CC------------------ceE
Confidence 345555 45789999999999999887777666654 2223333432221 01 345
Q ss_pred ceeeCHHHHHHHHHHhcccCCCCCcchhhHHHHHHHh
Q 006694 545 GYVVSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIAQL 581 (635)
Q Consensus 545 GYVlSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~~l 581 (635)
|.++.+++++.+--.. .. -....||+.++.-+.+.
T Consensus 125 ~~~~~~~~~~~~g~~~-~~-~~~~~eD~~~~~r~~~~ 159 (202)
T cd04185 125 GVLISRRVVEKIGLPD-KE-FFIWGDDTEYTLRASKA 159 (202)
T ss_pred EEEEeHHHHHHhCCCC-hh-hhccchHHHHHHHHHHc
Confidence 6899998888763111 11 12356999998777754
No 32
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=86.86 E-value=16 Score=40.81 Aligned_cols=185 Identities=14% Similarity=0.071 Sum_probs=99.2
Q ss_pred CeeEEEEEecCcCcHHHHHHHHHHhcCCcccCCCceEEEEEEeecCChhhHHHHHHHHhhCCCEEEeeccccCCchhHHH
Q 006694 384 RLDLFIGVFSTANNFKRRMAVRRAWMQYPAVKAGAVAVRFFVGLHKNQIVNEELWTELQTYRDIQLMPFVDYYSIITWKT 463 (635)
Q Consensus 384 ~~~LlI~V~Sap~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~~df~DsY~nLtlKt 463 (635)
.+.+-|+|++--+...-++.|+.- .+.. ..+..+.++-..+ +++..+.+++..+++..+....... |.. |.
T Consensus 74 ~p~vsViIP~yNE~~~i~~~l~sl-l~q~---yp~~eIivVdDgs-~D~t~~~~~~~~~~~~~v~vv~~~~---n~G-ka 144 (444)
T PRK14583 74 HPLVSILVPCFNEGLNARETIHAA-LAQT---YTNIEVIAINDGS-SDDTAQVLDALLAEDPRLRVIHLAH---NQG-KA 144 (444)
T ss_pred CCcEEEEEEeCCCHHHHHHHHHHH-HcCC---CCCeEEEEEECCC-CccHHHHHHHHHHhCCCEEEEEeCC---CCC-HH
Confidence 345667776665444444555432 2221 1246654444433 3334455555566677665554322 222 33
Q ss_pred HHHHHhhhcccCceEEEeeCCceeecHHHHHHHHHhc--CCCCceEEEEeecCCCCcCCCC---CCcccCCCCCCC----
Q 006694 464 VAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLNRA--NVTQGLLYGLINADARPHRSPD---SKWYISPEEWPE---- 534 (635)
Q Consensus 464 l~~~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~--~~~~~ly~G~~~~~~~P~Rd~~---~KwyV~~~eyp~---- 534 (635)
.+++.+....+.+|++..|+|+.+..+.+...+... ++.-....|... .++.. ++... .+|..
T Consensus 145 -~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~-----~~~~~~~~~~~~~--~e~~~~~~~ 216 (444)
T PRK14583 145 -IALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPR-----IRTRSTLIGRVQV--GEFSSIIGL 216 (444)
T ss_pred -HHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccce-----ecCCCcchhhHHH--HHHHHHHHH
Confidence 245555555688999999999999999888877654 232223333221 11111 11110 01100
Q ss_pred -----CCC--CCCCCCCceeeCHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhcCCceecccC
Q 006694 535 -----SSY--PPWAHGPGYVVSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIAQLKKLGMQVSYIN 592 (635)
Q Consensus 535 -----~~Y--PpY~~G~GYVlSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~~l~~~gi~v~~~~ 592 (635)
..| +..++|.+..+.+++++++--.. ...-.||.-+|.-+... |..+.|..
T Consensus 217 ~~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~~----~~~i~ED~dl~~rl~~~---G~~i~~~p 274 (444)
T PRK14583 217 IKRTQRVYGQVFTVSGVVAAFRRRALADVGYWS----PDMITEDIDISWKLQLK---HWSVFFEP 274 (444)
T ss_pred HHHHHHHhCCceEecCceeEEEHHHHHHcCCCC----CCcccccHHHHHHHHHc---CCeEEEee
Confidence 111 22346888999999888763221 12336999999888754 55555544
No 33
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=86.63 E-value=30 Score=36.12 Aligned_cols=114 Identities=18% Similarity=0.206 Sum_probs=60.3
Q ss_pred HHhhhcccCceEEEeeCCceeecHHHHHHHHHhcCCCC-ceEEEEeecC-C-----CCcCC---------CCCCcccCCC
Q 006694 467 CIFGTEVVSAKYVMKTDDDAFVRVDEVLASLNRANVTQ-GLLYGLINAD-A-----RPHRS---------PDSKWYISPE 530 (635)
Q Consensus 467 ~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~~~~~-~ly~G~~~~~-~-----~P~Rd---------~~~KwyV~~~ 530 (635)
...+......+|++..|+|+.+..+-|..+++...... ....|.+... . ..... -...|.....
T Consensus 75 ~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (299)
T cd02510 75 RIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPE 154 (299)
T ss_pred HHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCH
Confidence 44444445789999999999998777777666543222 2222222110 0 00000 0011111100
Q ss_pred -----CCC-CCCCCCCCCCCceeeCHHHHHHHHHHhcccCCCCCcchhhHHHHHHHh
Q 006694 531 -----EWP-ESSYPPWAHGPGYVVSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIAQL 581 (635)
Q Consensus 531 -----eyp-~~~YPpY~~G~GYVlSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~~l 581 (635)
..+ ....-+++.|+++++++++...+---. ........||+-+..=+.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfD-e~~~~~~~ED~Dl~~R~~~~ 210 (299)
T cd02510 155 EERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYD-EGMDIWGGENLELSFKVWQC 210 (299)
T ss_pred HHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCC-CcccccCchhHHHHHHHHHc
Confidence 001 123346778999999999998884322 23333346999776555443
No 34
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=86.44 E-value=12 Score=36.70 Aligned_cols=114 Identities=14% Similarity=0.102 Sum_probs=64.0
Q ss_pred cccCceEEEeeCCceeecHHHHHHHHHhcCC--CCceEEEEeecC-CCCc----CCC--CCCcccCCCCCC-CCCCCCCC
Q 006694 472 EVVSAKYVMKTDDDAFVRVDEVLASLNRANV--TQGLLYGLINAD-ARPH----RSP--DSKWYISPEEWP-ESSYPPWA 541 (635)
Q Consensus 472 ~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~~~--~~~ly~G~~~~~-~~P~----Rd~--~~KwyV~~~eyp-~~~YPpY~ 541 (635)
+..+.+|++.+|+|+++..+.|...+..... .-....|..... .... +.. ....+....... ......++
T Consensus 81 ~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (234)
T cd06421 81 AHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFC 160 (234)
T ss_pred HhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCcee
Confidence 3347899999999999999888888876543 222333332211 1000 000 000000000000 01224567
Q ss_pred CCCceeeCHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhcCCceecccC
Q 006694 542 HGPGYVVSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIAQLKKLGMQVSYIN 592 (635)
Q Consensus 542 ~G~GYVlSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~~l~~~gi~v~~~~ 592 (635)
.|++.++++++++++--- ...+..||..++.-+.+. |..+.|..
T Consensus 161 ~g~~~~~r~~~~~~ig~~----~~~~~~eD~~l~~r~~~~---g~~i~~~~ 204 (234)
T cd06421 161 CGSGAVVRREALDEIGGF----PTDSVTEDLATSLRLHAK---GWRSVYVP 204 (234)
T ss_pred cCceeeEeHHHHHHhCCC----CccceeccHHHHHHHHHc---CceEEEec
Confidence 899999999999887322 123457999999777654 55555544
No 35
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=84.07 E-value=1.7 Score=42.55 Aligned_cols=109 Identities=19% Similarity=0.200 Sum_probs=67.5
Q ss_pred cCceEEEeeCCceeecHHHHHHHHHhcC-CCCceEEEEeecCCCCcCCCCC---CcccCC--CCCCCCCCCCCCCCCcee
Q 006694 474 VSAKYVMKTDDDAFVRVDEVLASLNRAN-VTQGLLYGLINADARPHRSPDS---KWYISP--EEWPESSYPPWAHGPGYV 547 (635)
Q Consensus 474 ~~a~fvmKvDDDtfVnv~~Ll~~L~~~~-~~~~ly~G~~~~~~~P~Rd~~~---KwyV~~--~eyp~~~YPpY~~G~GYV 547 (635)
.++++++..|+|+.|+.+.|.+.+..+. +...+..|... ..|.+.-.+ +-++.. ..+..-.-.++|.|+.++
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~G~~m~ 107 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPR--GVPARGFWSRLEAAFFNFLPGVLQALGGAPFAWGGSMA 107 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEeccc--ccCCcCHHHHHHHHHHhHHHHHHHHhcCCCceecceee
Confidence 6889999999999999999888887764 34444444221 112221110 011100 000011246789999999
Q ss_pred eCHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhcCCceec
Q 006694 548 VSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIAQLKKLGMQVS 589 (635)
Q Consensus 548 lSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~~l~~~gi~v~ 589 (635)
+.+++++++--- ..+...--||..+|..+.+. |.++.
T Consensus 108 ~rr~~L~~~GG~--~~l~~~ladD~~l~~~~~~~---G~~v~ 144 (175)
T PF13506_consen 108 FRREALEEIGGF--EALADYLADDYALGRRLRAR---GYRVV 144 (175)
T ss_pred eEHHHHHHcccH--HHHhhhhhHHHHHHHHHHHC---CCeEE
Confidence 999999987221 13334568999999999876 44543
No 36
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=83.58 E-value=14 Score=34.81 Aligned_cols=111 Identities=9% Similarity=-0.059 Sum_probs=63.1
Q ss_pred HHhhhcccCceEEEeeCCceeecHHHHHHHHHhc--CCCCceEEEEeecCCCCcCCCCCCcccCCCCCCCCCCCCCCCCC
Q 006694 467 CIFGTEVVSAKYVMKTDDDAFVRVDEVLASLNRA--NVTQGLLYGLINADARPHRSPDSKWYISPEEWPESSYPPWAHGP 544 (635)
Q Consensus 467 ~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~--~~~~~ly~G~~~~~~~P~Rd~~~KwyV~~~eyp~~~YPpY~~G~ 544 (635)
+..+....+.+|++..|+|.++..+.+...+... .+...+++|........... ...+..............++.|+
T Consensus 67 ~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 145 (202)
T cd06433 67 MNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRV-IGRRRPPPFLDKFLLYGMPICHQ 145 (202)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCc-ccCCCCcchhhhHHhhcCcccCc
Confidence 4445455578999999999999988888877432 23445667764321111111 01111111112223335567889
Q ss_pred ceeeCHHHHHHHHHHhcccCCCCCcchhhHHHHHHHh
Q 006694 545 GYVVSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIAQL 581 (635)
Q Consensus 545 GYVlSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~~l 581 (635)
+.++++++.+.+-.-. .. +...||..+..-+.+.
T Consensus 146 ~~~~~~~~~~~~~~f~-~~--~~~~~D~~~~~r~~~~ 179 (202)
T cd06433 146 ATFFRRSLFEKYGGFD-ES--YRIAADYDLLLRLLLA 179 (202)
T ss_pred ceEEEHHHHHHhCCCc-hh--hCchhhHHHHHHHHHc
Confidence 9999999998874211 11 2245787665555543
No 37
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=83.29 E-value=49 Score=32.53 Aligned_cols=162 Identities=10% Similarity=0.028 Sum_probs=80.7
Q ss_pred CceEEEEEEeecCChhhHHHHHHHHhhCCCEEEeeccccCCchhHHHHHHHHhhhcccCceEEEeeCCceeecHHHHHHH
Q 006694 417 GAVAVRFFVGLHKNQIVNEELWTELQTYRDIQLMPFVDYYSIITWKTVAICIFGTEVVSAKYVMKTDDDAFVRVDEVLAS 496 (635)
Q Consensus 417 ~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~~df~DsY~nLtlKtl~~~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~ 496 (635)
..+.++.+-+.+.+ +....+++..+.+..+....-... ... .++..+....+.+|++.+|||..+..+.|...
T Consensus 30 ~~~evivvd~~s~d-~~~~~~~~~~~~~~~v~~i~~~~~--~~~----~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~ 102 (249)
T cd02525 30 DLIEIIVVDGGSTD-GTREIVQEYAAKDPRIRLIDNPKR--IQS----AGLNIGIRNSRGDIIIRVDAHAVYPKDYILEL 102 (249)
T ss_pred CccEEEEEeCCCCc-cHHHHHHHHHhcCCeEEEEeCCCC--Cch----HHHHHHHHHhCCCEEEEECCCccCCHHHHHHH
Confidence 35666655554444 333444444444444544432211 111 23444444458899999999999998877777
Q ss_pred HHhcCC-CCceEEEEeecC-CCCcCC-----CCCCcccCCCCC--CCCCCCCCCCCCceeeCHHHHHHHHHHhcccCCCC
Q 006694 497 LNRANV-TQGLLYGLINAD-ARPHRS-----PDSKWYISPEEW--PESSYPPWAHGPGYVVSYDIAKAVAKRHKGHLKMF 567 (635)
Q Consensus 497 L~~~~~-~~~ly~G~~~~~-~~P~Rd-----~~~KwyV~~~ey--p~~~YPpY~~G~GYVlSrdla~~I~~~~~~~~~~f 567 (635)
+..... ......|..... ..+... ....+......+ .....=.++.|++.++++++.+++--- ...+.
T Consensus 103 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~ 179 (249)
T cd02525 103 VEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAVKIGYVDTVHHGAYRREVFEKVGGF---DESLV 179 (249)
T ss_pred HHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCccccccccccccccccccceEEHHHHHHhCCC---CcccC
Confidence 765432 223444443221 111100 000000000000 110001145788889999998876322 11234
Q ss_pred CcchhhHHHHHHHhhcCCceeccc
Q 006694 568 KLEDVAMGIWIAQLKKLGMQVSYI 591 (635)
Q Consensus 568 ~~EDV~iGi~l~~l~~~gi~v~~~ 591 (635)
..||..++.-+.+. |..+.+.
T Consensus 180 ~~eD~~l~~r~~~~---G~~~~~~ 200 (249)
T cd02525 180 RNEDAELNYRLRKA---GYKIWLS 200 (249)
T ss_pred ccchhHHHHHHHHc---CcEEEEc
Confidence 56999888666544 5555443
No 38
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=81.83 E-value=30 Score=39.75 Aligned_cols=194 Identities=13% Similarity=0.042 Sum_probs=96.4
Q ss_pred CeeEEEEEecCcCcHHHHHHHHHHhcCCcccCCCceEEEEEEeecCChhhHHHHHHHHhhCCCEEEeeccccCCchhHHH
Q 006694 384 RLDLFIGVFSTANNFKRRMAVRRAWMQYPAVKAGAVAVRFFVGLHKNQIVNEELWTELQTYRDIQLMPFVDYYSIITWKT 463 (635)
Q Consensus 384 ~~~LlI~V~Sap~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~~df~DsY~nLtlKt 463 (635)
.+.+-|+|+.--+..--.+.|+..=.+.. ..+.++.++. ..++++....+++=+++|..+...- .+. ..-+-|.
T Consensus 65 ~p~vaIlIPA~NE~~vI~~~l~s~L~~ld---Y~~~eIiVv~-d~ndd~T~~~v~~l~~~~p~v~~vv-~~~-~gp~~Ka 138 (504)
T PRK14716 65 EKRIAIFVPAWREADVIGRMLEHNLATLD---YENYRIFVGT-YPNDPATLREVDRLAARYPRVHLVI-VPH-DGPTSKA 138 (504)
T ss_pred CCceEEEEeccCchhHHHHHHHHHHHcCC---CCCeEEEEEE-CCCChhHHHHHHHHHHHCCCeEEEE-eCC-CCCCCHH
Confidence 34566666554433333344443311111 1244444433 2333343344443355677764332 221 2223455
Q ss_pred HH---HHHhh---hcc--cCceEEEeeCCceeecHHHHHHHHHhcCCCCceEEEEeecCCCCcCCCCCCc----ccCCCC
Q 006694 464 VA---ICIFG---TEV--VSAKYVMKTDDDAFVRVDEVLASLNRANVTQGLLYGLINADARPHRSPDSKW----YISPEE 531 (635)
Q Consensus 464 l~---~~~~~---~~~--~~a~fvmKvDDDtfVnv~~Ll~~L~~~~~~~~ly~G~~~~~~~P~Rd~~~Kw----yV~~~e 531 (635)
-+ ++..+ ..+ .++++++..|-|+.+..+.|... ....+...+.-+.+... ..+.+.| |. .+
T Consensus 139 ~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~-~~~~~~~~~VQ~pv~~~----~~~~~~~~ag~y~--~e 211 (504)
T PRK14716 139 DCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLY-NYLLPRHDFVQLPVFSL----PRDWGEWVAGTYM--DE 211 (504)
T ss_pred HHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHH-HhhcCCCCEEecceecc----CCchhHHHHHHHH--HH
Confidence 42 22222 111 25699999999999999988654 33223322221111111 1111111 11 11
Q ss_pred CCC---------C--CCCCCCCCCceeeCHHHHHHHHHHhcc--cCCCCCcchhhHHHHHHHhhcCCceecccCC
Q 006694 532 WPE---------S--SYPPWAHGPGYVVSYDIAKAVAKRHKG--HLKMFKLEDVAMGIWIAQLKKLGMQVSYINE 593 (635)
Q Consensus 532 yp~---------~--~YPpY~~G~GYVlSrdla~~I~~~~~~--~~~~f~~EDV~iGi~l~~l~~~gi~v~~~~d 593 (635)
|.+ + .-+..+.|.|+.+++++++++...... --...--||.-+|.-+... |.++.|.+.
T Consensus 212 f~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~---G~rv~y~p~ 283 (504)
T PRK14716 212 FAESHLKDLPVREALGGLIPSAGVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRA---GFRQIFVRV 283 (504)
T ss_pred HHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHC---CCEEEEecc
Confidence 111 0 123346899999999999999664311 1122357999999988755 667777554
No 39
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=81.46 E-value=5.9 Score=37.59 Aligned_cols=136 Identities=12% Similarity=0.078 Sum_probs=72.6
Q ss_pred ceEEEEEEeecCChhhHHHHHHHHhhCCCEEEeeccccCCchhHHHHHHHHhhhcccCceEEEeeCCceeecHHHHHHHH
Q 006694 418 AVAVRFFVGLHKNQIVNEELWTELQTYRDIQLMPFVDYYSIITWKTVAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASL 497 (635)
Q Consensus 418 ~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~~df~DsY~nLtlKtl~~~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L 497 (635)
.+.++.+-+.+.+.. ...+++..+++..+..+.....+ . |. .++..+......+|++.+|+|.....+.|...+
T Consensus 29 ~~eiivvdd~s~d~t-~~~~~~~~~~~~~i~~i~~~~n~---G-~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~ 102 (181)
T cd04187 29 DYEIIFVDDGSTDRT-LEILRELAARDPRVKVIRLSRNF---G-QQ-AALLAGLDHARGDAVITMDADLQDPPELIPEML 102 (181)
T ss_pred CeEEEEEeCCCCccH-HHHHHHHHhhCCCEEEEEecCCC---C-cH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHH
Confidence 456655555444432 33344444556666665543322 1 11 223334444466999999999999988777777
Q ss_pred HhcCCCCceEEEEeecCCCCc-CCCCCCcccCCCCCCCCCCCCCCCCCceeeCHHHHHHHHHH
Q 006694 498 NRANVTQGLLYGLINADARPH-RSPDSKWYISPEEWPESSYPPWAHGPGYVVSYDIAKAVAKR 559 (635)
Q Consensus 498 ~~~~~~~~ly~G~~~~~~~P~-Rd~~~KwyV~~~eyp~~~YPpY~~G~GYVlSrdla~~I~~~ 559 (635)
+.........+|.......+. +.-.++.+...........-+...|+.+++++.+++.+..-
T Consensus 103 ~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~ 165 (181)
T cd04187 103 AKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKLSGVDIPDNGGDFRLMDRKVVDALLLL 165 (181)
T ss_pred HHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEcHHHHHHHHhc
Confidence 765445567777644321110 00000000000000011223456788899999999988653
No 40
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=81.33 E-value=24 Score=33.10 Aligned_cols=95 Identities=13% Similarity=-0.006 Sum_probs=56.5
Q ss_pred HHhhhcccCceEEEeeCCceeecHHHHHHHHHhcCCCCceEEEEeecCCCCcCCCCCCcccCCCCCCCCCCCCCCCCCce
Q 006694 467 CIFGTEVVSAKYVMKTDDDAFVRVDEVLASLNRANVTQGLLYGLINADARPHRSPDSKWYISPEEWPESSYPPWAHGPGY 546 (635)
Q Consensus 467 ~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~~~~~~ly~G~~~~~~~P~Rd~~~KwyV~~~eyp~~~YPpY~~G~GY 546 (635)
+..+.+....+|++..|+|..+..+-|...++... ....+.|.......... . ....|+++
T Consensus 71 ~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~-~~~~v~g~~~~~~~~~~----~--------------~~~~~~~~ 131 (182)
T cd06420 71 RNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAE-PGVFLSGSRVLLNEKLT----E--------------RGIRGCNM 131 (182)
T ss_pred HHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhC-CCcEEecceeecccccc----e--------------eEeccceE
Confidence 34445556789999999999999888877777653 23344443221111000 0 34468888
Q ss_pred eeCHHHHHHHHHHhcccCCCCCcchhhHHHHHHHh
Q 006694 547 VVSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIAQL 581 (635)
Q Consensus 547 VlSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~~l 581 (635)
.+.+..+..+.--. ........||+-++.=+.+.
T Consensus 132 ~~~r~~~~~~ggf~-~~~~~~~~eD~~l~~r~~~~ 165 (182)
T cd06420 132 SFWKKDLLAVNGFD-EEFTGWGGEDSELVARLLNS 165 (182)
T ss_pred EEEHHHHHHhCCCC-cccccCCcchHHHHHHHHHc
Confidence 88888777543221 12222347999887766544
No 41
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=80.82 E-value=38 Score=37.00 Aligned_cols=195 Identities=12% Similarity=-0.012 Sum_probs=109.4
Q ss_pred eeEEEEEecCcCcH-HHHHHHHHHhcCCcccCCCceEEEEEEeecCChhhHHHHHHHHhhCCCEEEeeccccCCchhHHH
Q 006694 385 LDLFIGVFSTANNF-KRRMAVRRAWMQYPAVKAGAVAVRFFVGLHKNQIVNEELWTELQTYRDIQLMPFVDYYSIITWKT 463 (635)
Q Consensus 385 ~~LlI~V~Sap~~~-~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~~df~DsY~nLtlKt 463 (635)
+.+-|+|++--.+. --.+.++..-.++ -.+..+..+.+.+.+ +..+.+.+-.+++++.+.+... -..-.-|
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~d----yp~~evivv~d~~~d-~~~~~~~~~~~~~~~~~~~~~~--~~~~~gK- 125 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQD----YPRYEVIVVDDGSTD-ETYEILEELGAEYGPNFRVIYP--EKKNGGK- 125 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCC----CCCceEEEECCCCCh-hHHHHHHHHHhhcCcceEEEec--cccCccc-
Confidence 67777787776555 3444454444332 123566666654443 3444555556666533333311 0111122
Q ss_pred HHHHHhhhcccCceEEEeeCCceeecHHHHHHHHHhcCCCCce-EEEEeecCCCCc-CCCCCCcccC----C----CCCC
Q 006694 464 VAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLNRANVTQGL-LYGLINADARPH-RSPDSKWYIS----P----EEWP 533 (635)
Q Consensus 464 l~~~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~~~~~~l-y~G~~~~~~~P~-Rd~~~KwyV~----~----~eyp 533 (635)
..++.++....+.++++..|.|+.+..+.|.+.+..+...... +.|.......+. .+..++-..- . ..+.
T Consensus 126 ~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (439)
T COG1215 126 AGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAA 205 (439)
T ss_pred hHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhh
Confidence 2345566666669999999999999999999999886543322 344321111110 0000110000 0 0001
Q ss_pred -CCCCCCCCCCCceeeCHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhcCCceecccCCC
Q 006694 534 -ESSYPPWAHGPGYVVSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIAQLKKLGMQVSYINEP 594 (635)
Q Consensus 534 -~~~YPpY~~G~GYVlSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~~l~~~gi~v~~~~d~ 594 (635)
.......|.|+++++.+++++.+-.. ....--||..+++.+.. .|..+.|.++.
T Consensus 206 ~~~g~~~~~~G~~~~~rr~aL~~~g~~----~~~~i~ED~~lt~~l~~---~G~~~~~~~~~ 260 (439)
T COG1215 206 SKGGLISFLSGSSSAFRRSALEEVGGW----LEDTITEDADLTLRLHL---RGYRVVYVPEA 260 (439)
T ss_pred hhcCCeEEEcceeeeEEHHHHHHhCCC----CCCceeccHHHHHHHHH---CCCeEEEeecc
Confidence 22257789999999999999988622 23344699999999873 36666665543
No 42
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=80.61 E-value=5.6 Score=38.31 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=65.8
Q ss_pred EEEeeCCceeecHHHHHHHHHhcC-CCCceEEEEeecCCCCcCCCCCCcccCCCC------C---CCCCCCCCCCCCcee
Q 006694 478 YVMKTDDDAFVRVDEVLASLNRAN-VTQGLLYGLINADARPHRSPDSKWYISPEE------W---PESSYPPWAHGPGYV 547 (635)
Q Consensus 478 fvmKvDDDtfVnv~~Ll~~L~~~~-~~~~ly~G~~~~~~~P~Rd~~~KwyV~~~e------y---p~~~YPpY~~G~GYV 547 (635)
||+.+|+|+-+..+-+.+.+.... +.-...-|.+... +..+.-.++...+.. . .....+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFR--NRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEec--CCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 689999999999998888877665 2333444443321 111111122111110 0 123346778999999
Q ss_pred eCHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhcCCceecccCCC
Q 006694 548 VSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIAQLKKLGMQVSYINEP 594 (635)
Q Consensus 548 lSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~~l~~~gi~v~~~~d~ 594 (635)
+++++++++.-- . -..+..||..++.-+.+. |..+.+.++.
T Consensus 79 ~r~~~l~~vg~~--~-~~~~~~ED~~l~~~l~~~---G~~~~~~~~~ 119 (193)
T PF13632_consen 79 FRREALREVGGF--D-DPFSIGEDMDLGFRLRRA---GYRIVYVPDA 119 (193)
T ss_pred eeHHHHHHhCcc--c-ccccccchHHHHHHHHHC---CCEEEEeccc
Confidence 999999987421 1 234566999999887654 5566655543
No 43
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=80.38 E-value=50 Score=32.43 Aligned_cols=113 Identities=18% Similarity=0.157 Sum_probs=57.3
Q ss_pred CceEEEeeCCceeecHHHHHHHH--Hh-cCCC-CceEEEEeecC-CCCcCCC---CCCcccCCCCCCCC--CCCCCCCCC
Q 006694 475 SAKYVMKTDDDAFVRVDEVLASL--NR-ANVT-QGLLYGLINAD-ARPHRSP---DSKWYISPEEWPES--SYPPWAHGP 544 (635)
Q Consensus 475 ~a~fvmKvDDDtfVnv~~Ll~~L--~~-~~~~-~~ly~G~~~~~-~~P~Rd~---~~KwyV~~~eyp~~--~YPpY~~G~ 544 (635)
+++|++..|+|+.+..+.|...+ .. .... .-..+|..... ....... ...|.......... .-..++.|+
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEEGLKEVDFLITS 154 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccCCceEeeeeecc
Confidence 68999999999999988888775 22 2211 22233332221 1110000 00011000001111 112345688
Q ss_pred ceeeCHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhcCCceecccC
Q 006694 545 GYVVSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIAQLKKLGMQVSYIN 592 (635)
Q Consensus 545 GYVlSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~~l~~~gi~v~~~~ 592 (635)
|.++++++.+.+---. ... ....||+.+++-+.+. |..+.+..
T Consensus 155 ~~~~rr~~~~~~ggfd-~~~-~~~~eD~d~~~r~~~~---G~~~~~~~ 197 (237)
T cd02526 155 GSLISLEALEKVGGFD-EDL-FIDYVDTEWCLRARSK---GYKIYVVP 197 (237)
T ss_pred ceEEcHHHHHHhCCCC-HHH-cCccchHHHHHHHHHc---CCcEEEEc
Confidence 8999999888873221 111 2346899888777654 44444433
No 44
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=80.05 E-value=12 Score=35.96 Aligned_cols=158 Identities=13% Similarity=0.070 Sum_probs=77.3
Q ss_pred eEEEEEEeecCChhhHHHHHHHHhhCCCEEEeeccccCCchhHHHHHHHHhhhcccCceEEEeeCCceeecHHHHHHHHH
Q 006694 419 VAVRFFVGLHKNQIVNEELWTELQTYRDIQLMPFVDYYSIITWKTVAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLN 498 (635)
Q Consensus 419 v~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~~df~DsY~nLtlKtl~~~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L~ 498 (635)
..++++...+.+..+...+.+-.+.+. +..+.... |.. + -.++..+....+.+|++..|+|.++..+.|...++
T Consensus 30 ~eiiivdd~ss~d~t~~~~~~~~~~~~-i~~i~~~~---n~G-~-~~a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~ 103 (201)
T cd04195 30 DEVVLVKDGPVTQSLNEVLEEFKRKLP-LKVVPLEK---NRG-L-GKALNEGLKHCTYDWVARMDTDDISLPDRFEKQLD 103 (201)
T ss_pred cEEEEEECCCCchhHHHHHHHHHhcCC-eEEEEcCc---ccc-H-HHHHHHHHHhcCCCEEEEeCCccccCcHHHHHHHH
Confidence 445444433334444444444445555 54443332 221 1 11234444455789999999999999888887777
Q ss_pred hcC--CCCceEEEEeecCCCCcCCCCCCcccCCC-----CCCCCCCCCCCCCCceeeCHHHHHHHHHHhcccCCCCCcch
Q 006694 499 RAN--VTQGLLYGLINADARPHRSPDSKWYISPE-----EWPESSYPPWAHGPGYVVSYDIAKAVAKRHKGHLKMFKLED 571 (635)
Q Consensus 499 ~~~--~~~~ly~G~~~~~~~P~Rd~~~KwyV~~~-----eyp~~~YPpY~~G~GYVlSrdla~~I~~~~~~~~~~f~~ED 571 (635)
... +.-.++.|.........+....+. .+.. .+....- + ..|++.++.++++.++--- -.....||
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~-~~~~~~~~rr~~~~~~g~~----~~~~~~eD 176 (201)
T cd04195 104 FIEKNPEIDIVGGGVLEFDSDGNDIGKRR-LPTSHDDILKFARRRS-P-FNHPTVMFRKSKVLAVGGY----QDLPLVED 176 (201)
T ss_pred HHHhCCCeEEEcccEEEECCCCCeecccc-CCCCHHHHHHHhccCC-C-CCChHHhhhHHHHHHcCCc----CCCCCchH
Confidence 642 333455554322110000000000 0000 0100111 1 2466777777776655221 12256899
Q ss_pred hhHHHHHHHhhcCCceecccC
Q 006694 572 VAMGIWIAQLKKLGMQVSYIN 592 (635)
Q Consensus 572 V~iGi~l~~l~~~gi~v~~~~ 592 (635)
..+...+... |.++.+..
T Consensus 177 ~~~~~r~~~~---g~~~~~~~ 194 (201)
T cd04195 177 YALWARMLAN---GARFANLP 194 (201)
T ss_pred HHHHHHHHHc---CCceeccc
Confidence 9888777643 44555443
No 45
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=78.88 E-value=91 Score=32.84 Aligned_cols=110 Identities=16% Similarity=0.167 Sum_probs=65.6
Q ss_pred EEEeeCCceeecHHHHHHHHHhcCCCC-ceEEEEeecCC----CCcCC------CCCCc-ccCCCCCCC-----CCCCCC
Q 006694 478 YVMKTDDDAFVRVDEVLASLNRANVTQ-GLLYGLINADA----RPHRS------PDSKW-YISPEEWPE-----SSYPPW 540 (635)
Q Consensus 478 fvmKvDDDtfVnv~~Ll~~L~~~~~~~-~ly~G~~~~~~----~P~Rd------~~~Kw-yV~~~eyp~-----~~YPpY 540 (635)
|++-.++|+.+..+.|.+.++...... ..+.|...... .+.+. ....| +.+..+.+. ..+-.+
T Consensus 87 ~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (305)
T COG1216 87 YVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIAPDLSSYLEVVAS 166 (305)
T ss_pred EEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheeccccccccccceecccccccccccchhhhhhh
Confidence 999999999999999998888764332 33334332211 01111 01122 222222221 112225
Q ss_pred CCCCceeeCHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhcCCceecccC
Q 006694 541 AHGPGYVVSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIAQLKKLGMQVSYIN 592 (635)
Q Consensus 541 ~~G~GYVlSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~~l~~~gi~v~~~~ 592 (635)
+.|++.++++++.+++--- ..--+...||+-++.=+++. |.++.+..
T Consensus 167 ~~G~~~li~~~~~~~vG~~--de~~F~y~eD~D~~~R~~~~---G~~i~~~p 213 (305)
T COG1216 167 LSGACLLIRREAFEKVGGF--DERFFIYYEDVDLCLRARKA---GYKIYYVP 213 (305)
T ss_pred cceeeeEEcHHHHHHhCCC--CcccceeehHHHHHHHHHHc---CCeEEEee
Confidence 7899999999999998652 23334589999998777665 55554443
No 46
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=78.20 E-value=64 Score=30.72 Aligned_cols=159 Identities=11% Similarity=0.020 Sum_probs=78.8
Q ss_pred ceEEEEEEeecCChhhHHHHHHHHhhCCCEEEeeccccCCchhHHHHHHHHhhhcccCceEEEeeCCceeecHHHHHHHH
Q 006694 418 AVAVRFFVGLHKNQIVNEELWTELQTYRDIQLMPFVDYYSIITWKTVAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASL 497 (635)
Q Consensus 418 ~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~~df~DsY~nLtlKtl~~~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L 497 (635)
.+.++.+-+.+.+......+....+.+..+.+... .. |... -.++..+......+|++..|+|..+..+.|...+
T Consensus 31 ~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~-~~--~~g~--~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~ 105 (202)
T cd04184 31 NWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFR-EE--NGGI--SAATNSALELATGEFVALLDHDDELAPHALYEVV 105 (202)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEc-cc--CCCH--HHHHHHHHHhhcCCEEEEECCCCcCChHHHHHHH
Confidence 45665555555554444333333444444443322 21 2111 1233444445577999999999999988888877
Q ss_pred Hhc--CCCCceEEEEeecCCCCcCCCCCCcccCC--CCCCCCC-CCCCCCCCceeeCHHHHHHHHHHhcccCCCCCcchh
Q 006694 498 NRA--NVTQGLLYGLINADARPHRSPDSKWYISP--EEWPESS-YPPWAHGPGYVVSYDIAKAVAKRHKGHLKMFKLEDV 572 (635)
Q Consensus 498 ~~~--~~~~~ly~G~~~~~~~P~Rd~~~KwyV~~--~eyp~~~-YPpY~~G~GYVlSrdla~~I~~~~~~~~~~f~~EDV 572 (635)
+.. .+...+++|...... ..+.++.+. ..|.... +..-+.|++-++++++++++--- ...+...||.
T Consensus 106 ~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~iggf---~~~~~~~eD~ 177 (202)
T cd04184 106 KALNEHPDADLIYSDEDKID-----EGGKRSEPFFKPDWSPDLLLSQNYIGHLLVYRRSLVRQVGGF---REGFEGAQDY 177 (202)
T ss_pred HHHHhCCCCCEEEccHHhcc-----CCCCEeccccCCCCCHHHhhhcCCccceEeEEHHHHHHhCCC---CcCcccchhH
Confidence 765 233445555332110 011111110 1111111 11112455667888887776321 1123356898
Q ss_pred hHHHHHHHhhcCCceecccC
Q 006694 573 AMGIWIAQLKKLGMQVSYIN 592 (635)
Q Consensus 573 ~iGi~l~~l~~~gi~v~~~~ 592 (635)
-++.-+.+. |..+.|..
T Consensus 178 ~l~~rl~~~---g~~~~~~~ 194 (202)
T cd04184 178 DLVLRVSEH---TDRIAHIP 194 (202)
T ss_pred HHHHHHHhc---cceEEEcc
Confidence 777665543 55555443
No 47
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=78.12 E-value=3.8 Score=42.73 Aligned_cols=47 Identities=30% Similarity=0.423 Sum_probs=35.6
Q ss_pred CCCceeeCHHHHHHHHHHhc---ccCCCCCcchhhHHHHHHHhhcCCceeccc
Q 006694 542 HGPGYVVSYDIAKAVAKRHK---GHLKMFKLEDVAMGIWIAQLKKLGMQVSYI 591 (635)
Q Consensus 542 ~G~GYVlSrdla~~I~~~~~---~~~~~f~~EDV~iGi~l~~l~~~gi~v~~~ 591 (635)
+|+|+.||..+|+.|.+... ...+.+.--|-.+..|+.++ |++++.+
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~l---gv~LT~e 61 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAEL---GVPLTKE 61 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh---CCCceec
Confidence 89999999999999998754 22344445788899999877 5555543
No 48
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=76.52 E-value=28 Score=34.89 Aligned_cols=118 Identities=12% Similarity=0.146 Sum_probs=64.8
Q ss_pred HHHhhhcccCceEEEeeCCceeecHHHHHHHHHhcCCC-Cc-eEE-EEeecCCCCcCCCCCCcccCC---------CCCC
Q 006694 466 ICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLNRANVT-QG-LLY-GLINADARPHRSPDSKWYISP---------EEWP 533 (635)
Q Consensus 466 ~~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~~~~-~~-ly~-G~~~~~~~P~Rd~~~KwyV~~---------~eyp 533 (635)
++..+......+|++.+|+|+.+..+.|.+.+..+... .. .+. |.+.....+ .....+++... ....
T Consensus 75 a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 153 (241)
T cd06427 75 ACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNAR-ENWLTRMFALEYAAWFDYLLPGLA 153 (241)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCC-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455445577999999999999999998888775422 22 222 222111110 00000110000 0000
Q ss_pred CCCCCCCCCCCceeeCHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhcCCceeccc
Q 006694 534 ESSYPPWAHGPGYVVSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIAQLKKLGMQVSYI 591 (635)
Q Consensus 534 ~~~YPpY~~G~GYVlSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~~l~~~gi~v~~~ 591 (635)
....+..++|++.++++++.+.+--.. .....||..+++-+.+. |..+.+.
T Consensus 154 ~~~~~~~~~g~~~~~rr~~~~~vgg~~----~~~~~eD~~l~~rl~~~---G~r~~~~ 204 (241)
T cd06427 154 RLGLPIPLGGTSNHFRTDVLRELGGWD----PFNVTEDADLGLRLARA---GYRTGVL 204 (241)
T ss_pred hcCCeeecCCchHHhhHHHHHHcCCCC----cccchhhHHHHHHHHHC---CceEEEe
Confidence 112334568999999999988874322 12346999988766543 5555443
No 49
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=76.27 E-value=7.2 Score=36.75 Aligned_cols=134 Identities=7% Similarity=-0.039 Sum_probs=69.4
Q ss_pred ceEEEEEEeecCChhhHHHHHHHHhhCCCEEEeeccccCCchhHHHHHHHHhhhcccCceEEEeeCCceeecHHHHHHHH
Q 006694 418 AVAVRFFVGLHKNQIVNEELWTELQTYRDIQLMPFVDYYSIITWKTVAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASL 497 (635)
Q Consensus 418 ~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~~df~DsY~nLtlKtl~~~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L 497 (635)
...+..+-..+.+ .....+++-.+.+..+..+....... | -.++..+......+|++..|+|..+..+.|.+.+
T Consensus 28 ~~eiivvd~~s~d-~~~~~~~~~~~~~~~~~~~~~~~n~G----~-~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~ 101 (185)
T cd04179 28 DYEIIVVDDGSTD-GTAEIARELAARVPRVRVIRLSRNFG----K-GAAVRAGFKAARGDIVVTMDADLQHPPEDIPKLL 101 (185)
T ss_pred CEEEEEEcCCCCC-ChHHHHHHHHHhCCCeEEEEccCCCC----c-cHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHH
Confidence 3444444444433 33444555555566665554444332 1 1223344444455999999999999988888888
Q ss_pred Hh-cCCCCceEEEEeecCCCCc-CCCCCCc---ccCCC-CCCCCCCCCCCCCCceeeCHHHHHHHH
Q 006694 498 NR-ANVTQGLLYGLINADARPH-RSPDSKW---YISPE-EWPESSYPPWAHGPGYVVSYDIAKAVA 557 (635)
Q Consensus 498 ~~-~~~~~~ly~G~~~~~~~P~-Rd~~~Kw---yV~~~-eyp~~~YPpY~~G~GYVlSrdla~~I~ 557 (635)
.. ........+|......... .....++ ..... ..-...-.....|+.+++++++++.+.
T Consensus 102 ~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 102 EKLLEGGADVVIGSRFVRGGGAGMPLLRRLGSRLFNFLIRLLLGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHHhccCCcEEEEEeecCCCcccchHHHHHHHHHHHHHHHHHcCCCCcCCCCceeeeHHHHHHHHH
Confidence 86 3444567777644321100 0000000 00000 000111123346777899999999985
No 50
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=72.97 E-value=43 Score=37.45 Aligned_cols=185 Identities=11% Similarity=-0.004 Sum_probs=91.2
Q ss_pred CeeEEEEEecCcCcHHHHHHHHHHhcCCcccCCCceEEEEEEeecCChhhHHHHHHHHhhCCCEEEeeccccCCchhHHH
Q 006694 384 RLDLFIGVFSTANNFKRRMAVRRAWMQYPAVKAGAVAVRFFVGLHKNQIVNEELWTELQTYRDIQLMPFVDYYSIITWKT 463 (635)
Q Consensus 384 ~~~LlI~V~Sap~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~~df~DsY~nLtlKt 463 (635)
.+.+-|+|++--....-++.|+.--.+.- ....+.+..+-+.+.+ +..+.+++-.+.+..+...- .+. + .-|.
T Consensus 48 ~P~vsVIIP~yNe~~~l~~~l~sl~~q~y--p~~~~eIiVVDd~StD-~T~~il~~~~~~~~~v~v~~-~~~--~-~Gka 120 (439)
T TIGR03111 48 LPDITIIIPVYNSEDTLFNCIESIYNQTY--PIELIDIILANNQSTD-DSFQVFCRAQNEFPGLSLRY-MNS--D-QGKA 120 (439)
T ss_pred CCCEEEEEEeCCChHHHHHHHHHHHhcCC--CCCCeEEEEEECCCCh-hHHHHHHHHHHhCCCeEEEE-eCC--C-CCHH
Confidence 34555666554433444455554333321 1223455444333333 33333333334455543321 221 1 1232
Q ss_pred HHHHHhhhcccCceEEEeeCCceeecHHHHHHHHHhcC--CCCceEEEEeecCCCCcCCCCC--CcccCCC---CCC---
Q 006694 464 VAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLNRAN--VTQGLLYGLINADARPHRSPDS--KWYISPE---EWP--- 533 (635)
Q Consensus 464 l~~~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~~--~~~~ly~G~~~~~~~P~Rd~~~--KwyV~~~---eyp--- 533 (635)
- ++.++.+..+.+|++.+|+|..+..+.|.+.++... +.-....|.+...........+ .+++... +|.
T Consensus 121 ~-AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 199 (439)
T TIGR03111 121 K-ALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAF 199 (439)
T ss_pred H-HHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHH
Confidence 2 345555556789999999999999999888887653 2223344554332111100001 1111111 110
Q ss_pred --------CCCCCCCCCCCceeeCHHHHHHHHHHhcccCCCCCcchhhHHHHHHH
Q 006694 534 --------ESSYPPWAHGPGYVVSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIAQ 580 (635)
Q Consensus 534 --------~~~YPpY~~G~GYVlSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~~ 580 (635)
...-+..++|++.++.++++.++--- . ...-.||.-++.-+..
T Consensus 200 l~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf---~-~~~i~ED~~l~~rl~~ 250 (439)
T TIGR03111 200 LAGRNFESQVNSLFTLSGAFSAFRRETILKTQLY---N-SETVGEDTDMTFQIRE 250 (439)
T ss_pred HhhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCC---C-CCCcCccHHHHHHHHH
Confidence 01122346788889999988765221 1 1123799999876654
No 51
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=72.23 E-value=1e+02 Score=37.25 Aligned_cols=203 Identities=12% Similarity=0.022 Sum_probs=107.2
Q ss_pred ccCCCCCCCCCeeEEEEEecCcCcHHHHHHHHHHhcCCcccCCCceEEEEEEeecCChhhHHHHHHHHhhCCCEEEeecc
Q 006694 374 LRSVPLPLHHRLDLFIGVFSTANNFKRRMAVRRAWMQYPAVKAGAVAVRFFVGLHKNQIVNEELWTELQTYRDIQLMPFV 453 (635)
Q Consensus 374 l~~p~~~~~~~~~LlI~V~Sap~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~~df~ 453 (635)
+..+.++..+...+-|+|+.--..-.-.+.|...=.+. +-.++.+.|++. ++++.....+.+-.++|.++..+...
T Consensus 52 ~~~~~l~~~~~~~vsIlVPa~nE~~vi~~~i~~ll~~l---dYP~~eI~vi~~-~nD~~T~~~~~~l~~~~p~~~~v~~~ 127 (727)
T PRK11234 52 MSYRELYKPDEKPLAIMVPAWNETGVIGNMAELAATTL---DYENYHIFVGTY-PNDPATQADVDAVCARFPNVHKVVCA 127 (727)
T ss_pred CChhhcccCCCCCEEEEEecCcchhhHHHHHHHHHHhC---CCCCeEEEEEec-CCChhHHHHHHHHHHHCCCcEEEEeC
Confidence 34455555566777888877555554455555421111 112366655554 44444445566556778886443333
Q ss_pred ccCCchhHHHHHH---HHhhhc---cc--CceEEEeeCCceeecHHHHHHHHHhcCCCCceEEEEeecCCCCcCCCCCCc
Q 006694 454 DYYSIITWKTVAI---CIFGTE---VV--SAKYVMKTDDDAFVRVDEVLASLNRANVTQGLLYGLINADARPHRSPDSKW 525 (635)
Q Consensus 454 DsY~nLtlKtl~~---~~~~~~---~~--~a~fvmKvDDDtfVnv~~Ll~~L~~~~~~~~ly~G~~~~~~~P~Rd~~~Kw 525 (635)
. ..| +-|.-+. +..+.. +. .++.++-.|-|+.|..+.|. .+.........+-+-.. |.....+.|
T Consensus 128 ~-~g~-~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~~~VQ~p~~----p~~~~~~~~ 200 (727)
T PRK11234 128 R-PGP-TSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVERKDLIQIPVY----PFEREWTHF 200 (727)
T ss_pred C-CCC-CCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcCCCCeEeeccc----CCCccHHHH
Confidence 3 222 4566542 222211 12 34557779999999999996 44443322233333211 211111111
Q ss_pred ----ccCCCCCC---------CCC--CCCCCCCCceeeCHHHHHHHHHHhc--ccCCCCCcchhhHHHHHHHhhcCCcee
Q 006694 526 ----YISPEEWP---------ESS--YPPWAHGPGYVVSYDIAKAVAKRHK--GHLKMFKLEDVAMGIWIAQLKKLGMQV 588 (635)
Q Consensus 526 ----yV~~~eyp---------~~~--YPpY~~G~GYVlSrdla~~I~~~~~--~~~~~f~~EDV~iGi~l~~l~~~gi~v 588 (635)
|+. ||. ... -+-.+.|.|+.++|.+++.+.+... .-....--||.-+|+-+... |..+
T Consensus 201 ~~~~~~~--EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l~al~~~ggg~~~~~~~lTED~dlg~rL~~~---G~~v 275 (727)
T PRK11234 201 TSGTYID--EFAELHGKDVPVREALAGQVPSAGVGTCFSRRAVTALLEDGDGIAFDVQSLTEDYDIGFRLKEK---GMRE 275 (727)
T ss_pred HHHHHHH--HHHHHhhhhhHHHHHcCCCcccCCceEEEecccHHHHHHhcCCCCcCCCcchHHHHHHHHHHHC---CCEE
Confidence 111 111 011 2445789999999888777766531 12233446999999988765 5666
Q ss_pred cccC
Q 006694 589 SYIN 592 (635)
Q Consensus 589 ~~~~ 592 (635)
.|..
T Consensus 276 ~f~~ 279 (727)
T PRK11234 276 IFVR 279 (727)
T ss_pred EEcc
Confidence 6644
No 52
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=72.13 E-value=14 Score=35.34 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=47.4
Q ss_pred cCceEEEeeCCceeecHHHHHHHHHhcCCCCceEEEEeecCCCCcCCCCCCcccCC--CCC-----------CCCCCCCC
Q 006694 474 VSAKYVMKTDDDAFVRVDEVLASLNRANVTQGLLYGLINADARPHRSPDSKWYISP--EEW-----------PESSYPPW 540 (635)
Q Consensus 474 ~~a~fvmKvDDDtfVnv~~Ll~~L~~~~~~~~ly~G~~~~~~~P~Rd~~~KwyV~~--~ey-----------p~~~YPpY 540 (635)
.+.+|++.+|.|+.+.++.|...+..+......+.|..... ++...|.-.. ..| ..-.-+.+
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNSK-----NPDDSWITRLYAFAFLVFNRLRPLGRSNLGLSCQ 154 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEeee-----CCccCHHHHHHHHHHHHHHHHHHHHHHHcCCCee
Confidence 46899999999999998888887777654445666654321 1112221000 000 01122346
Q ss_pred CCCCceeeCHHHHHH
Q 006694 541 AHGPGYVVSYDIAKA 555 (635)
Q Consensus 541 ~~G~GYVlSrdla~~ 555 (635)
+.|.+++++++++++
T Consensus 155 ~~G~~~~~rr~~l~~ 169 (183)
T cd06438 155 LGGTGMCFPWAVLRQ 169 (183)
T ss_pred ecCchhhhHHHHHHh
Confidence 688889999988877
No 53
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=71.44 E-value=48 Score=33.32 Aligned_cols=133 Identities=11% Similarity=0.047 Sum_probs=69.2
Q ss_pred ceEEEEEEeecCChhhHHHHHHHHhhCCC--EEEeeccccCCchhHHHHHHHHhhhcccCceEEEeeCCceeecHHHHHH
Q 006694 418 AVAVRFFVGLHKNQIVNEELWTELQTYRD--IQLMPFVDYYSIITWKTVAICIFGTEVVSAKYVMKTDDDAFVRVDEVLA 495 (635)
Q Consensus 418 ~v~v~FvvG~~~~~~~~~~L~~Ea~~ygD--II~~df~DsY~nLtlKtl~~~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~ 495 (635)
.+.++++-+.+.+.. .+.+++-.+.|++ +...... .|... -.++..+......+|++.+|+|..+.++.|.+
T Consensus 40 ~~eiivvDdgS~D~t-~~i~~~~~~~~~~~~v~~~~~~---~n~G~--~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~ 113 (243)
T PLN02726 40 DFEIIVVDDGSPDGT-QDVVKQLQKVYGEDRILLRPRP---GKLGL--GTAYIHGLKHASGDFVVIMDADLSHHPKYLPS 113 (243)
T ss_pred CeEEEEEeCCCCCCH-HHHHHHHHHhcCCCcEEEEecC---CCCCH--HHHHHHHHHHcCCCEEEEEcCCCCCCHHHHHH
Confidence 567766665555532 2333433445553 3333221 12221 12333444445689999999999999998888
Q ss_pred HHHhcC-CCCceEEEEeecCCC--C----cCCCCCC---cccCCCCCCCCCCCCCCCCCceeeCHHHHHHHHHH
Q 006694 496 SLNRAN-VTQGLLYGLINADAR--P----HRSPDSK---WYISPEEWPESSYPPWAHGPGYVVSYDIAKAVAKR 559 (635)
Q Consensus 496 ~L~~~~-~~~~ly~G~~~~~~~--P----~Rd~~~K---wyV~~~eyp~~~YPpY~~G~GYVlSrdla~~I~~~ 559 (635)
.++... ....+++|....... . .|.-.++ +... ... .... ....|++.++++++++.+...
T Consensus 114 l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~-~~~~-~d~~g~~~~~rr~~~~~i~~~ 184 (243)
T PLN02726 114 FIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQ-TLL-WPGV-SDLTGSFRLYKRSALEDLVSS 184 (243)
T ss_pred HHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHH-HHh-CCCC-CcCCCcccceeHHHHHHHHhh
Confidence 777653 334577775432110 0 0100000 0000 001 1111 235788889999999999754
No 54
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=60.94 E-value=93 Score=31.95 Aligned_cols=143 Identities=10% Similarity=0.029 Sum_probs=67.3
Q ss_pred hhCCCEEEeeccccCCchhH-HHH-HHHHhhhcccCceEEEeeCCceeecHHHHHHHHHhcCCC--CceEEEEeecC-CC
Q 006694 442 QTYRDIQLMPFVDYYSIITW-KTV-AICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLNRANVT--QGLLYGLINAD-AR 516 (635)
Q Consensus 442 ~~ygDII~~df~DsY~nLtl-Ktl-~~~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~~~~--~~ly~G~~~~~-~~ 516 (635)
+.+.+|..+... .|+.. +.. .+++++.. .+++|++..|||+.+..+.+...++..... .-.+.|..... ..
T Consensus 42 ~~~~~i~~i~~~---~N~G~a~a~N~Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 117 (281)
T TIGR01556 42 LRGQKIALIHLG---DNQGIAGAQNQGLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGT 117 (281)
T ss_pred ccCCCeEEEECC---CCcchHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCC
Confidence 344566555433 33321 222 13455543 378999999999999987777766654322 22333322111 00
Q ss_pred CcCCC---CCCcccCCCC--CCCC-CCCCCCCCCceeeCHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhcCCceecc
Q 006694 517 PHRSP---DSKWYISPEE--WPES-SYPPWAHGPGYVVSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIAQLKKLGMQVSY 590 (635)
Q Consensus 517 P~Rd~---~~KwyV~~~e--yp~~-~YPpY~~G~GYVlSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~~l~~~gi~v~~ 590 (635)
..+.+ ...+..+... .... .-..++.++|.++++++++++---. ..+ ++..||+-+.+=+.+ .|..+.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~li~~~~~~~iG~fd-e~~-fi~~~D~e~~~R~~~---~G~~i~~ 192 (281)
T TIGR01556 118 SRRLPAIHLDGLLLRQISLDGLTTPQKTSFLISSGCLITREVYQRLGMMD-EEL-FIDHVDTEWSLRAQN---YGIPLYI 192 (281)
T ss_pred cccCCceeecccceeeecccccCCceeccEEEcCcceeeHHHHHHhCCcc-Hhh-cccchHHHHHHHHHH---CCCEEEE
Confidence 00000 0001100000 0011 1123455677789999998873211 111 235678766543333 3544444
Q ss_pred cCC
Q 006694 591 INE 593 (635)
Q Consensus 591 ~~d 593 (635)
..+
T Consensus 193 ~~~ 195 (281)
T TIGR01556 193 DPD 195 (281)
T ss_pred eCC
Confidence 433
No 55
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=59.89 E-value=91 Score=30.19 Aligned_cols=83 Identities=8% Similarity=-0.086 Sum_probs=48.0
Q ss_pred cCceEEEeeCCceeecHHHHHHHHHh-cCCCCceEEEEeecCCCCcCCCCCCc--ccCC--CC---CCCCCCCCCCCCCc
Q 006694 474 VSAKYVMKTDDDAFVRVDEVLASLNR-ANVTQGLLYGLINADARPHRSPDSKW--YISP--EE---WPESSYPPWAHGPG 545 (635)
Q Consensus 474 ~~a~fvmKvDDDtfVnv~~Ll~~L~~-~~~~~~ly~G~~~~~~~P~Rd~~~Kw--yV~~--~e---yp~~~YPpY~~G~G 545 (635)
...+|++.+|+|..+..+.|...++. ..+......|......... .....+ +.+. .. +....-...+.|++
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGV-EGWGLKRKLISRGANLLARLLLGRKVSDPTSGF 155 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCcc-CCCcHHHHHHHHHHHHHHHHHcCCCCCCCCCcc
Confidence 44589999999999998888888876 3444556666543221111 100000 0000 00 00011123567888
Q ss_pred eeeCHHHHHHHH
Q 006694 546 YVVSYDIAKAVA 557 (635)
Q Consensus 546 YVlSrdla~~I~ 557 (635)
.++++++++.+.
T Consensus 156 ~~~~r~~~~~ig 167 (224)
T cd06442 156 RAYRREVLEKLI 167 (224)
T ss_pred chhhHHHHHHHh
Confidence 899999999997
No 56
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=58.33 E-value=42 Score=32.70 Aligned_cols=89 Identities=10% Similarity=0.042 Sum_probs=52.1
Q ss_pred ceEEEEEEeecCChhhHHHHHHHHhhCCCE-EEeeccccCCchhHHHHHHHHhhhcccCceEEEeeCCceeecHHHHHHH
Q 006694 418 AVAVRFFVGLHKNQIVNEELWTELQTYRDI-QLMPFVDYYSIITWKTVAICIFGTEVVSAKYVMKTDDDAFVRVDEVLAS 496 (635)
Q Consensus 418 ~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDI-I~~df~DsY~nLtlKtl~~~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~ 496 (635)
.+.++.+-+.+.+. ....+++..+.++.. ..+.... |.. |. .++..+......+|++.+|+|..+..+.+...
T Consensus 30 ~~eiivvdd~S~D~-t~~~~~~~~~~~~~~i~~i~~~~---n~G-~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~~l 103 (211)
T cd04188 30 SYEIIVVDDGSKDG-TAEVARKLARKNPALIRVLTLPK---NRG-KG-GAVRAGMLAARGDYILFADADLATPFEELEKL 103 (211)
T ss_pred CEEEEEEeCCCCCc-hHHHHHHHHHhCCCcEEEEEccc---CCC-cH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence 46666655555443 334455555566654 3333222 222 11 22333334445699999999999999988888
Q ss_pred HHhc-CCCCceEEEEee
Q 006694 497 LNRA-NVTQGLLYGLIN 512 (635)
Q Consensus 497 L~~~-~~~~~ly~G~~~ 512 (635)
++.. .......+|...
T Consensus 104 ~~~~~~~~~~~v~g~r~ 120 (211)
T cd04188 104 EEALKTSGYDIAIGSRA 120 (211)
T ss_pred HHHHhccCCcEEEEEee
Confidence 8863 444567777643
No 57
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=58.30 E-value=79 Score=33.93 Aligned_cols=134 Identities=13% Similarity=0.064 Sum_probs=69.8
Q ss_pred ceEEEEEEeecCChhhHHHHHHHHhhCCC-EEEeeccccCCchhHHHHHHHHhhhcccCceEEEeeCCceeecHHHHHHH
Q 006694 418 AVAVRFFVGLHKNQIVNEELWTELQTYRD-IQLMPFVDYYSIITWKTVAICIFGTEVVSAKYVMKTDDDAFVRVDEVLAS 496 (635)
Q Consensus 418 ~v~v~FvvG~~~~~~~~~~L~~Ea~~ygD-II~~df~DsY~nLtlKtl~~~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~ 496 (635)
.+.++++-+.+.+... +.+++-++.+++ ++.......+ . |.- ++..+..+.+.+|++.+|+|.-.+++.+.+.
T Consensus 38 ~~EIIvVDDgS~D~T~-~il~~~~~~~~~~v~~i~~~~n~---G-~~~-A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l 111 (325)
T PRK10714 38 EYEILLIDDGSSDNSA-EMLVEAAQAPDSHIVAILLNRNY---G-QHS-AIMAGFSHVTGDLIITLDADLQNPPEEIPRL 111 (325)
T ss_pred CEEEEEEeCCCCCcHH-HHHHHHHhhcCCcEEEEEeCCCC---C-HHH-HHHHHHHhCCCCEEEEECCCCCCCHHHHHHH
Confidence 5677777766665432 233333344444 4444333322 1 111 2223333457899999999999999999888
Q ss_pred HHhcCCCCceEEEEeecC-CCCcCCCCCCcccCC-CCCCCCCCCCCCCCCce-eeCHHHHHHHHHH
Q 006694 497 LNRANVTQGLLYGLINAD-ARPHRSPDSKWYISP-EEWPESSYPPWAHGPGY-VVSYDIAKAVAKR 559 (635)
Q Consensus 497 L~~~~~~~~ly~G~~~~~-~~P~Rd~~~KwyV~~-~eyp~~~YPpY~~G~GY-VlSrdla~~I~~~ 559 (635)
++......+...|..... ..+.|.-.++.+--. .......++.+ ++|| ++++++++.+...
T Consensus 112 ~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~~g~~~~d~--~~gfr~~~r~~~~~l~~~ 175 (325)
T PRK10714 112 VAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDY--GCMLRAYRRHIVDAMLHC 175 (325)
T ss_pred HHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCC--CcCeEEEcHHHHHHHHHC
Confidence 887643334555543221 112221111111000 00112334443 4444 8999999999654
No 58
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=56.48 E-value=1.3e+02 Score=25.96 Aligned_cols=78 Identities=10% Similarity=0.072 Sum_probs=49.2
Q ss_pred hhhcccCceEEEeeCCceeecHHHHHHHHHhcC--CCCceEEEEeecCCCCcCCCCCCcccCCCCCCCCCCCCCCCCCce
Q 006694 469 FGTEVVSAKYVMKTDDDAFVRVDEVLASLNRAN--VTQGLLYGLINADARPHRSPDSKWYISPEEWPESSYPPWAHGPGY 546 (635)
Q Consensus 469 ~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~~--~~~~ly~G~~~~~~~P~Rd~~~KwyV~~~eyp~~~YPpY~~G~GY 546 (635)
.+....+.+|++.+|+|..+..+.+...+.... +...+..|. +++
T Consensus 71 ~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~---------------------------------~~~ 117 (156)
T cd00761 71 AGLKAARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP---------------------------------GNL 117 (156)
T ss_pred HHHHHhcCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc---------------------------------chh
Confidence 333334799999999999998888877644322 222222222 789
Q ss_pred eeCHHHHHHHHHHhcccCCCCCcchhhHHHHHHHh
Q 006694 547 VVSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIAQL 581 (635)
Q Consensus 547 VlSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~~l 581 (635)
++++++.+.+.... ......-||..++..+.+.
T Consensus 118 ~~~~~~~~~~~~~~--~~~~~~~ed~~~~~~~~~~ 150 (156)
T cd00761 118 LFRRELLEEIGGFD--EALLSGEEDDDFLLRLLRG 150 (156)
T ss_pred eeeHHHHHHhCCcc--hHhcCCcchHHHHHHHHhh
Confidence 99999998885433 1112226787777665543
No 59
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=44.21 E-value=1.8e+02 Score=34.91 Aligned_cols=128 Identities=11% Similarity=0.069 Sum_probs=67.6
Q ss_pred chhHHHHHHHHhhhcccCceEEEeeCCceeecHHHHHHHHHhcCCCCc--eEEEEe-ecCCCCc-CCCCCCcccCCCC--
Q 006694 458 IITWKTVAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLNRANVTQG--LLYGLI-NADARPH-RSPDSKWYISPEE-- 531 (635)
Q Consensus 458 nLtlKtl~~~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~~~~~~--ly~G~~-~~~~~P~-Rd~~~KwyV~~~e-- 531 (635)
|...|.-+ +..+.+..+.+|++..|.|+.+..+.|.+.+........ ...+.. ..+..|. |+-.....++.+.
T Consensus 212 n~~~KAgn-LN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~ 290 (713)
T TIGR03030 212 NVHAKAGN-INNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENEL 290 (713)
T ss_pred CCCCChHH-HHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHH
Confidence 33345332 344445567899999999999998888887765422222 111111 1111111 1100000001000
Q ss_pred -C----C--CCCCCCCCCCCceeeCHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhcCCceecccCC
Q 006694 532 -W----P--ESSYPPWAHGPGYVVSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIAQLKKLGMQVSYINE 593 (635)
Q Consensus 532 -y----p--~~~YPpY~~G~GYVlSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~~l~~~gi~v~~~~d 593 (635)
| + ...-..++.|.+.++.+++...+---. ...-.||..++.-+.+. |....|..+
T Consensus 291 f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~----~~~vtED~~l~~rL~~~---G~~~~y~~~ 352 (713)
T TIGR03030 291 FYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIA----GETVTEDAETALKLHRR---GWNSAYLDR 352 (713)
T ss_pred HHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCC----CCCcCcHHHHHHHHHHc---CCeEEEecc
Confidence 0 0 001124677999999999998773211 12237999999887654 555555543
No 60
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=40.40 E-value=80 Score=33.47 Aligned_cols=52 Identities=27% Similarity=0.305 Sum_probs=37.9
Q ss_pred CcCCCCCCCcEEEEEEEeeCceEEEEE-----CCeEE-EEEEeccCCCccceeEEEEcCcce
Q 006694 295 SQYFPFKQGYLSVMTLRLGEEGIQMTV-----DGKHI-TSFAFRESLEPWLVSEVRISGDLE 350 (635)
Q Consensus 295 ~~~fPF~~G~~F~l~i~~~~egf~i~V-----nG~h~-~sF~~R~~l~~~~v~~l~i~Gdv~ 350 (635)
.|++-| .|.++|..+.+..+.+. |++.+ ++|+|++=|...+|++++|.|=-.
T Consensus 129 iWp~~F----e~~lrv~l~~g~Lt~~~rV~Ntd~KpFsF~~alHtYf~vsdisevrveGL~t 186 (305)
T KOG1594|consen 129 IWPHSF----ELRLRVSLGDGELTLTSRVRNTDSKPFSFSFALHTYFRVSDISEVRVEGLET 186 (305)
T ss_pred hCCcce----EEEEEEEEcCCceEEEEEeecCCCCceEEEeEeeeeEeecccceEEEecccc
Confidence 466555 57777777766655543 78888 789999877778899999888433
No 61
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=34.63 E-value=5.4e+02 Score=26.68 Aligned_cols=160 Identities=11% Similarity=0.009 Sum_probs=85.5
Q ss_pred CceEEEEEEeecCChhhHHHHHHHHhhCCCE-EE-eeccccCCchhHHHHHHHHhhhcccCceEEEeeCCceeecHHHHH
Q 006694 417 GAVAVRFFVGLHKNQIVNEELWTELQTYRDI-QL-MPFVDYYSIITWKTVAICIFGTEVVSAKYVMKTDDDAFVRVDEVL 494 (635)
Q Consensus 417 ~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDI-I~-~df~DsY~nLtlKtl~~~~~~~~~~~a~fvmKvDDDtfVnv~~Ll 494 (635)
..+.++++=+.+. ......|.+-.+.++.+ ++ .+......+.+ .+...+......+|++..|.|+++..+.+.
T Consensus 33 ~~~eiIvvd~~s~-~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a----~arN~g~~~A~~d~l~flD~D~i~~~~~i~ 107 (281)
T PF10111_consen 33 PDFEIIVVDDGSS-DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRA----KARNIGAKYARGDYLIFLDADCIPSPDFIE 107 (281)
T ss_pred CCEEEEEEECCCc-hhHHHHHHHHHhccCceEEEEcCCCCCCcCHH----HHHHHHHHHcCCCEEEEEcCCeeeCHHHHH
Confidence 4566655544433 33446677777777776 32 22222222322 123344445589999999999999999998
Q ss_pred HHHH---hcCC-CCceEEEEeecCCCCcCCC--C-CCcccCCCC---C---CCCCC-CCCCCCCceeeCHHHHHHHHHHh
Q 006694 495 ASLN---RANV-TQGLLYGLINADARPHRSP--D-SKWYISPEE---W---PESSY-PPWAHGPGYVVSYDIAKAVAKRH 560 (635)
Q Consensus 495 ~~L~---~~~~-~~~ly~G~~~~~~~P~Rd~--~-~KwyV~~~e---y---p~~~Y-PpY~~G~GYVlSrdla~~I~~~~ 560 (635)
+.++ .... ....+.+-+.....+.... . .+....... . ....+ .....|++.+++++.-.+|----
T Consensus 108 ~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGfD 187 (281)
T PF10111_consen 108 KLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIGGFD 187 (281)
T ss_pred HHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhccccccccccccceEEEEEHHHHHHhCCCC
Confidence 8888 3332 2233333322221111000 0 000000000 0 01111 12335699999999888874433
Q ss_pred cccCCCCCcchhhHHHHHHHhh
Q 006694 561 KGHLKMFKLEDVAMGIWIAQLK 582 (635)
Q Consensus 561 ~~~~~~f~~EDV~iGi~l~~l~ 582 (635)
........||.=++.=|.+.+
T Consensus 188 -E~f~G~G~ED~D~~~RL~~~~ 208 (281)
T PF10111_consen 188 -ERFRGWGYEDIDFGYRLKKAG 208 (281)
T ss_pred -ccccCCCcchHHHHHHHHHcC
Confidence 344446789998887766654
No 62
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=32.82 E-value=4.8e+02 Score=25.54 Aligned_cols=111 Identities=13% Similarity=0.044 Sum_probs=57.3
Q ss_pred HhhhcccCceEEEeeCCceeecHHHHHHHHHhcCCCC-ceEEEEeecCCCCcCCCCCCcccCCCCC------C-------
Q 006694 468 IFGTEVVSAKYVMKTDDDAFVRVDEVLASLNRANVTQ-GLLYGLINADARPHRSPDSKWYISPEEW------P------- 533 (635)
Q Consensus 468 ~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~~~~~-~ly~G~~~~~~~P~Rd~~~KwyV~~~ey------p------- 533 (635)
..+....+.+|++.+|+|+.+..+.|...+......+ ..+.|.+.. .+....|......+ .
T Consensus 80 n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (232)
T cd06437 80 AEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGH-----INANYSLLTRVQAMSLDYHFTIEQVARS 154 (232)
T ss_pred HHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceee-----EcCCCchhhHhhhhhHHhhhhHhHhhHh
Confidence 3444445889999999999999988888554432222 233333211 11111121000000 0
Q ss_pred CCCCCCCCCCCceeeCHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhcCCceecc
Q 006694 534 ESSYPPWAHGPGYVVSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIAQLKKLGMQVSY 590 (635)
Q Consensus 534 ~~~YPpY~~G~GYVlSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~~l~~~gi~v~~ 590 (635)
.......+.|++-++.+++...+---. .....||+.++.-+... |..+.|
T Consensus 155 ~~~~~~~~~g~~~~~rr~~~~~vgg~~----~~~~~ED~~l~~rl~~~---G~~~~~ 204 (232)
T cd06437 155 STGLFFNFNGTAGVWRKECIEDAGGWN----HDTLTEDLDLSYRAQLK---GWKFVY 204 (232)
T ss_pred hcCCeEEeccchhhhhHHHHHHhCCCC----CCcchhhHHHHHHHHHC---CCeEEE
Confidence 001111235666678888877762111 12347999988777543 444443
No 63
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=32.72 E-value=2.8e+02 Score=30.35 Aligned_cols=83 Identities=18% Similarity=0.204 Sum_probs=45.9
Q ss_pred HHHhhhcccCceEEEeeCCceeecHH---HHHHHHHhcCCCCceEEEEeecCCCCcCCCCCCcccCCCCCCCCCC-CCCC
Q 006694 466 ICIFGTEVVSAKYVMKTDDDAFVRVD---EVLASLNRANVTQGLLYGLINADARPHRSPDSKWYISPEEWPESSY-PPWA 541 (635)
Q Consensus 466 ~~~~~~~~~~a~fvmKvDDDtfVnv~---~Ll~~L~~~~~~~~ly~G~~~~~~~P~Rd~~~KwyV~~~eyp~~~Y-PpY~ 541 (635)
++.++....++++++..|||..+.++ -+.+.|..+.....++. +.... + .|++...... |...| -.|+
T Consensus 88 aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~--ISa~N----d-nG~~~~~~~~-~~~lyrs~ff 159 (334)
T cd02514 88 ALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWC--ISAWN----D-NGKEHFVDDT-PSLLYRTDFF 159 (334)
T ss_pred HHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEE--EEeec----c-CCcccccCCC-cceEEEecCC
Confidence 33343333479999999999999888 44444444433333222 11110 0 1221111111 22222 3678
Q ss_pred CCCceeeCHHHHHHH
Q 006694 542 HGPGYVVSYDIAKAV 556 (635)
Q Consensus 542 ~G~GYVlSrdla~~I 556 (635)
.|.|..+.+++-+.+
T Consensus 160 ~glGWml~r~~W~e~ 174 (334)
T cd02514 160 PGLGWMLTRKLWKEL 174 (334)
T ss_pred CchHHHHHHHHHHHh
Confidence 899999999998887
No 64
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=28.16 E-value=5.4e+02 Score=24.63 Aligned_cols=104 Identities=12% Similarity=0.081 Sum_probs=54.1
Q ss_pred HhhhcccCceEEEeeCCceeecHHHHHHHHHhcCCCCceEEEEeecC----CCCcCCCCCCcccCCCCCCCCCCCCCCCC
Q 006694 468 IFGTEVVSAKYVMKTDDDAFVRVDEVLASLNRANVTQGLLYGLINAD----ARPHRSPDSKWYISPEEWPESSYPPWAHG 543 (635)
Q Consensus 468 ~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~~~~~~ly~G~~~~~----~~P~Rd~~~KwyV~~~eyp~~~YPpY~~G 543 (635)
..+......+|++.+|+|..+..+.+.+.+...... ....|..... ....+....++... ......+ ..+
T Consensus 65 n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~ 138 (221)
T cd02522 65 NAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRAD-GAVAGAFRLRFDDPGPRLRLLELGANLR----SRLFGLP-YGD 138 (221)
T ss_pred HHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcC-CcEEEEEEeeecCCccchhhhhhcccce----ecccCCC-cCC
Confidence 334444457999999999999887777766554333 2333332111 11111000111110 0011112 245
Q ss_pred CceeeCHHHHHHHHHHhcccCCCCCcchhhHHHHHHHh
Q 006694 544 PGYVVSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIAQL 581 (635)
Q Consensus 544 ~GYVlSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~~l 581 (635)
.|..+++++...+-.-. ..+..||.-++.-+.+.
T Consensus 139 ~~~~~r~~~~~~~G~fd----~~~~~ED~d~~~r~~~~ 172 (221)
T cd02522 139 QGLFIRRELFEELGGFP----ELPLMEDVELVRRLRRR 172 (221)
T ss_pred ceEEEEHHHHHHhCCCC----ccccccHHHHHHHHHhC
Confidence 68899999887774322 12278999877555443
No 65
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=27.19 E-value=1.8e+02 Score=27.68 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=32.0
Q ss_pred CcCCCCCCCcEEEEEEEeeCceEEEEECCeEEEEEEecc
Q 006694 295 SQYFPFKQGYLSVMTLRLGEEGIQMTVDGKHITSFAFRE 333 (635)
Q Consensus 295 ~~~fPF~~G~~F~l~i~~~~egf~i~VnG~h~~sF~~R~ 333 (635)
....-+.+|+=.+++|.|..+.+.+.|||+.+.++.-..
T Consensus 119 ~~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~~ 157 (185)
T PF06439_consen 119 SVNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDPS 157 (185)
T ss_dssp SS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETTS
T ss_pred cccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcCC
Confidence 345678899999999999999999999999999988776
No 66
>COG3306 Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=27.18 E-value=1.3e+02 Score=31.66 Aligned_cols=171 Identities=16% Similarity=0.143 Sum_probs=80.4
Q ss_pred EEEecCcCcHHHHHHHHHHhcCCcccCCCceEEEEEEeecCChhhHHHHHHHHhhCCCEEEeeccccCCchhHHHHHHHH
Q 006694 389 IGVFSTANNFKRRMAVRRAWMQYPAVKAGAVAVRFFVGLHKNQIVNEELWTELQTYRDIQLMPFVDYYSIITWKTVAICI 468 (635)
Q Consensus 389 I~V~Sap~~~~rR~aIR~TW~~~~~~~~~~v~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~~df~DsY~nLtlKtl~~~~ 468 (635)
+.|.|-.+..+|+..++++-.... + +...|+-+..+..+....+..|.. ++ +...+.-...+-=-+|-
T Consensus 5 ~~vIsL~~s~~R~~~~~~~f~~~~----~-~~f~~~~av~~~~~~~~~~~~~~~-~~------~~~~~~~~ls~gEiGC~ 72 (255)
T COG3306 5 IHVISLKSSQERLEHVAETFEALG----G-LPFQRFDAVNGKSEDEKDLIAELD-AG------HLLYEGRRLSPGEIGCY 72 (255)
T ss_pred eehhhhhhhHHHHHHHHHHHhhcc----C-CCceEeeccCccccCHHHHhcccc-ch------hhhhhccccCchhHHHH
Confidence 446677778889999999887632 3 667777777664222222222210 11 11111111111111111
Q ss_pred hh-----hcc--cCceEEEeeCCceeecHH--HHHHHHHhcCCCCceEEEEeecCCCCcCCCC--C-CcccCCCCCCCCC
Q 006694 469 FG-----TEV--VSAKYVMKTDDDAFVRVD--EVLASLNRANVTQGLLYGLINADARPHRSPD--S-KWYISPEEWPESS 536 (635)
Q Consensus 469 ~~-----~~~--~~a~fvmKvDDDtfVnv~--~Ll~~L~~~~~~~~ly~G~~~~~~~P~Rd~~--~-KwyV~~~eyp~~~ 536 (635)
.. ..| -+..|++-..||+.+.-+ ..+....... -...|.-... +|... . ........+-...
T Consensus 73 lSH~~lw~~~~~~~~~yi~I~EDDV~l~~~f~~~l~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 146 (255)
T COG3306 73 LSHLKLWKKALEENLPYILILEDDVVLGEDFEEFLEDDLKLP---VRFLGDDIDI---HRLETFLSPNPLAFNAVFIGRN 146 (255)
T ss_pred HHHHHHHHHHHhCCCCeEEEecccccccccHHHHHHHHHhhh---hhccchHHHH---HHHHHhcccceeeccccccccc
Confidence 10 112 366699999999998522 2222222211 1111211100 00000 0 0000001111112
Q ss_pred C----CCCCCCCceeeCHHHHHHHHHHhcccC-CCCCcchhhHHHHH
Q 006694 537 Y----PPWAHGPGYVVSYDIAKAVAKRHKGHL-KMFKLEDVAMGIWI 578 (635)
Q Consensus 537 Y----PpY~~G~GYVlSrdla~~I~~~~~~~~-~~f~~EDV~iGi~l 578 (635)
| ..+.+-+||++|+.+|+.+++..+ .. ...+.|+...--++
T Consensus 147 ~~~~~~~~~gt~gYiis~~aAk~fl~~~~-~~~~~~pvD~~~~~~~~ 192 (255)
T COG3306 147 FPLLNSYHLGTAGYIISRKAAKKFLELTE-SFKVVLPVDWFMFLEFL 192 (255)
T ss_pred chhhhhcccCccceeecHHHHHHHHHHhh-hcccccChhHHHhhhhc
Confidence 2 235788999999999999999873 32 34455665554444
No 67
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=27.15 E-value=2e+02 Score=27.98 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=28.7
Q ss_pred HhhhcccCceEEEeeCCceeecHHHHHHHHHhcCCCCceEEEE
Q 006694 468 IFGTEVVSAKYVMKTDDDAFVRVDEVLASLNRANVTQGLLYGL 510 (635)
Q Consensus 468 ~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~~~~~~ly~G~ 510 (635)
..+......+|++..|+|.++..+.+...+.........++|.
T Consensus 77 N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 77 NQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 3444555789999999999999888776665543222334443
No 68
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=26.76 E-value=4.7e+02 Score=31.49 Aligned_cols=200 Identities=12% Similarity=0.072 Sum_probs=105.7
Q ss_pred CCeeEEEEEecCcCcHH-HHHHHHHHhcCCccc-CCCceEEEEEEeecCChhhHH----HHHHHHhhCC---CEEEeecc
Q 006694 383 HRLDLFIGVFSTANNFK-RRMAVRRAWMQYPAV-KAGAVAVRFFVGLHKNQIVNE----ELWTELQTYR---DIQLMPFV 453 (635)
Q Consensus 383 ~~~~LlI~V~Sap~~~~-rR~aIR~TW~~~~~~-~~~~v~v~FvvG~~~~~~~~~----~L~~Ea~~yg---DII~~df~ 453 (635)
...++.|+|++--...+ -+..|+.++.+-... ...++.+ |++..+.++++.. .+.+=.++|+ .|.. .
T Consensus 122 ~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~y---r 197 (691)
T PRK05454 122 PEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRIFY---R 197 (691)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEE---E
Confidence 34567777777665543 235666666532111 1235666 8888777654321 1222233343 3443 3
Q ss_pred ccCCchhHHHHHHHHhhhcc-cCceEEEeeCCceeecHHHHHHHHHhcCCCCceEEEEeecCCCCcCCCCCCcccCCCCC
Q 006694 454 DYYSIITWKTVAICIFGTEV-VSAKYVMKTDDDAFVRVDEVLASLNRANVTQGLLYGLINADARPHRSPDSKWYISPEEW 532 (635)
Q Consensus 454 DsY~nLtlKtl~~~~~~~~~-~~a~fvmKvDDDtfVnv~~Ll~~L~~~~~~~~ly~G~~~~~~~P~Rd~~~KwyV~~~ey 532 (635)
..-.|.-.|.-..-.+.... .+++|++-.|-|+.+..+.|.+.+.....+.. +|-+.....+. +.. .++---..+
T Consensus 198 ~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~~~~-n~~-slfaR~qqf 273 (691)
T PRK05454 198 RRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLPVAV-GAD-TLFARLQQF 273 (691)
T ss_pred ECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCccCc-CCC-CHHHHHHHH
Confidence 34455566776655554432 57899999999999999999988876422211 45544322221 111 111000000
Q ss_pred CCCCC-C-------------CCCCCCceeeCHHHHHHHHHHhc--ccC---CCCCcchhhHHHHHHHhhcCCceecccCC
Q 006694 533 PESSY-P-------------PWAHGPGYVVSYDIAKAVAKRHK--GHL---KMFKLEDVAMGIWIAQLKKLGMQVSYINE 593 (635)
Q Consensus 533 p~~~Y-P-------------pY~~G~GYVlSrdla~~I~~~~~--~~~---~~f~~EDV~iGi~l~~l~~~gi~v~~~~d 593 (635)
....| | -.+.|...|+.++....+..-.. ... ...--||...|..++.. |..+.|..+
T Consensus 274 ~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~---GyrV~~~pd 350 (691)
T PRK05454 274 ATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRA---GWGVWLAPD 350 (691)
T ss_pred HHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHC---CCEEEEcCc
Confidence 00001 0 01247777888887765531100 011 12346899999998765 566777665
No 69
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=26.43 E-value=3.4e+02 Score=33.55 Aligned_cols=126 Identities=10% Similarity=0.061 Sum_probs=67.5
Q ss_pred chhHHHHHHHHhhhcccCceEEEeeCCceeecHHHHHHHHHhc--CCCCceEEEEee-cCCCC-cCCCCCCc-ccCCC-C
Q 006694 458 IITWKTVAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLNRA--NVTQGLLYGLIN-ADARP-HRSPDSKW-YISPE-E 531 (635)
Q Consensus 458 nLtlKtl~~~~~~~~~~~a~fvmKvDDDtfVnv~~Ll~~L~~~--~~~~~ly~G~~~-~~~~P-~Rd~~~Kw-yV~~~-e 531 (635)
|...|.- .+..+....+.+|++..|.|+.+..+-|...+... ++.-.+.-+... .+..| .|+- +.. ..+.+ +
T Consensus 323 n~~gKAG-nLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~n~dp~~rnl-~~~~~~~~e~~ 400 (852)
T PRK11498 323 HEHAKAG-NINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFSPDPFERNL-GRFRKTPNEGT 400 (852)
T ss_pred CCcchHH-HHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceeccCCchHHHhh-HHHhhcccchh
Confidence 3334443 34455555688999999999999988877665432 333222222111 11111 1110 000 00000 0
Q ss_pred --C----C--CCCCCCCCCCCceeeCHHHHHHHHHHhcccCCCCCcchhhHHHHHHHhhcCCceecccC
Q 006694 532 --W----P--ESSYPPWAHGPGYVVSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIAQLKKLGMQVSYIN 592 (635)
Q Consensus 532 --y----p--~~~YPpY~~G~GYVlSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~~l~~~gi~v~~~~ 592 (635)
| + ...--.++.|++.++.+++++.+---. .. .--||.-+++-+... |.++.|..
T Consensus 401 ~fy~~iq~g~~~~~a~~~~Gs~aviRReaLeeVGGfd-~~---titED~dlslRL~~~---Gyrv~yl~ 462 (852)
T PRK11498 401 LFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIA-VE---TVTEDAHTSLRLHRR---GYTSAYMR 462 (852)
T ss_pred HHHHHHHhHHHhhcccccccceeeeEHHHHHHhcCCC-CC---ccCccHHHHHHHHHc---CCEEEEEe
Confidence 0 0 000124578999999999999884322 11 236999999887754 55666543
No 70
>PLN03181 glycosyltransferase; Provisional
Probab=23.74 E-value=4.1e+02 Score=30.17 Aligned_cols=87 Identities=14% Similarity=0.064 Sum_probs=51.9
Q ss_pred HHHHHHhcCCc--ccCCCceEEEEEEeecC----C---hh-hHHHH---HHHHhhCC-CEEEee-ccc-cCCchhHHHHH
Q 006694 402 MAVRRAWMQYP--AVKAGAVAVRFFVGLHK----N---QI-VNEEL---WTELQTYR-DIQLMP-FVD-YYSIITWKTVA 465 (635)
Q Consensus 402 ~aIR~TW~~~~--~~~~~~v~v~FvvG~~~----~---~~-~~~~L---~~Ea~~yg-DII~~d-f~D-sY~nLtlKtl~ 465 (635)
++-|+.|.+.. ...+++-+|+-|.|..+ + .. +...+ .+=+++|| ++...+ ..| .+.....|..+
T Consensus 109 D~kR~~Wl~~~p~~~~~~~prVViVT~Sdp~~C~~~~gD~~LlriikNR~dYArrHGY~lf~~~a~Ld~~~p~~WaKipa 188 (453)
T PLN03181 109 DEKRAEWLKLHPSFAPGAEERVVMVTGSQPTPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNALLHPKMNSYWAKLPV 188 (453)
T ss_pred HHHHHHHHHhCCCCCCCCCCCEEEEECCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCcEEEeccccCccCchhhhHHHH
Confidence 44456776521 22355666777777652 1 11 11111 12266777 444433 223 56666777776
Q ss_pred HHHhhhcccCceEEEeeCCceee
Q 006694 466 ICIFGTEVVSAKYVMKTDDDAFV 488 (635)
Q Consensus 466 ~~~~~~~~~~a~fvmKvDDDtfV 488 (635)
+..-...+|+++||.-.|.|+++
T Consensus 189 lRaAM~a~PeAEWfWWLDsDALI 211 (453)
T PLN03181 189 VRAAMLAHPEAEWIWWVDSDAVF 211 (453)
T ss_pred HHHHHHHCCCceEEEEecCCcee
Confidence 66666778999999999999998
No 71
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=22.01 E-value=2.8e+02 Score=23.54 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=29.7
Q ss_pred CCCEEEeeccccCCchhHHHHHHHH-hhhcccCceEEEeeCCceeecHHH
Q 006694 444 YRDIQLMPFVDYYSIITWKTVAICI-FGTEVVSAKYVMKTDDDAFVRVDE 492 (635)
Q Consensus 444 ygDII~~df~DsY~nLtlKtl~~~~-~~~~~~~a~fvmKvDDDtfVnv~~ 492 (635)
+.++-+..+.+.|..-..... ... +......++|++.+|-|=|+.++.
T Consensus 40 ~~~v~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 40 LPGVGIIRWVDPYRDERRQRA-WRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCCcEEEEeCCCccchHHHHH-HHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 455666666666654333322 222 223335899999999999987653
No 72
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=21.18 E-value=2.8e+02 Score=29.84 Aligned_cols=99 Identities=16% Similarity=0.134 Sum_probs=57.5
Q ss_pred CceEEEeeCCceeec---HHHHHHHHHhcC---------CCCc-eEEEEeec--CCCCcCCCC--CCcccCCCCCCCCCC
Q 006694 475 SAKYVMKTDDDAFVR---VDEVLASLNRAN---------VTQG-LLYGLINA--DARPHRSPD--SKWYISPEEWPESSY 537 (635)
Q Consensus 475 ~a~fvmKvDDDtfVn---v~~Ll~~L~~~~---------~~~~-ly~G~~~~--~~~P~Rd~~--~KwyV~~~eyp~~~Y 537 (635)
.++||+.-|||.-|. ++++++..+... +... .-+..... .....|... ..| ......
T Consensus 116 ~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~~~~~iT~R~~~~~vhr~~~~~~~~------~~~~~~ 189 (294)
T PF05212_consen 116 PYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSEIHHPITKRRPDSEVHRKTRGGPRC------CDDSTG 189 (294)
T ss_pred cceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCceeeeeEEeecCCceeEeccCCCCCc------CCCCCC
Confidence 689999999999885 666666666531 1111 11111111 112222111 112 124566
Q ss_pred CCCCC---CCceeeCHHHHHHHHHHhcccCCCCCcchhhHHHHHH
Q 006694 538 PPWAH---GPGYVVSYDIAKAVAKRHKGHLKMFKLEDVAMGIWIA 579 (635)
Q Consensus 538 PpY~~---G~GYVlSrdla~~I~~~~~~~~~~f~~EDV~iGi~l~ 579 (635)
||+.+ ..+=|+|+++.+.+....+..+..-+==|..+|.|+.
T Consensus 190 ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~~ 234 (294)
T PF05212_consen 190 PPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCAG 234 (294)
T ss_pred CCcceEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHhc
Confidence 77544 7788899999988877654344444555788899983
No 73
>PTZ00334 trans-sialidase; Provisional
Probab=20.88 E-value=6.4e+02 Score=30.90 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=38.1
Q ss_pred CCCCCcEEEEEEEeeC-ceEEEEECCeEEEEEEecc-CCCccceeEEEEcCcc
Q 006694 299 PFKQGYLSVMTLRLGE-EGIQMTVDGKHITSFAFRE-SLEPWLVSEVRISGDL 349 (635)
Q Consensus 299 PF~~G~~F~l~i~~~~-egf~i~VnG~h~~sF~~R~-~l~~~~v~~l~i~Gdv 349 (635)
+..+|+...+.|.... ....++|||+.+.+-..-. .-.+..|+++.|-||-
T Consensus 639 tWe~~k~yqVal~L~~G~~gsvYVDG~~vg~~~~~l~~~~~~~IshFyiGgdg 691 (780)
T PTZ00334 639 NWEPETTHQVAIVLRNGKQGSAYVDGQRVGDASCELKNTDSKGISHFYIGGDG 691 (780)
T ss_pred cccCCCeEEEEEEEeCCCeEEEEECCEEecCcccccCCCCCcccceEEECCCc
Confidence 5678999999998854 4789999999996633322 1235689999998864
No 74
>PF00853 Runt: Runt domain; InterPro: IPR013524 The AML1 gene is rearranged by the t(8;21) translocation in acute myeloid leukemia []. The gene is highly similar to the Drosophila melanogaster segmentation gene runt and to the mouse transcription factor PEBP2 alpha subunit gene []. The region of shared similarity, known as the Runt domain, is responsible for DNA-binding and protein-protein interaction. In addition to the highly-conserved Runt domain, the AML-1 gene product carries a putative ATP-binding site (GRSGRGKS), and has a C-terminal region rich in proline and serine residues. The protein (known as acute myeloid leukemia 1 protein, oncogene AML-1, core-binding factor (CBF), alpha-B subunit, etc.) binds to the core site, 5'-pygpyggt-3', of a number of enhancers and promoters. The protein is a heterodimer of alpha- and beta-subunits. The alpha-subunit binds DNA as a monomer, and appears to have a role in the development of normal hematopoiesis. CBF is a nuclear protein expressed in numerous tissue types, except brain and heart; highest levels have been found to occur in thymus, bone marrow and peripheral blood. This domain occurs towards the N terminus of the proteins in this entry.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1E50_E 1LJM_A 1CO1_A 1H9D_C 1CMO_A 1EAO_B 1HJC_D 1HJB_F 2J6W_B 1EAN_A ....
Probab=20.44 E-value=1.2e+02 Score=28.65 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=15.5
Q ss_pred CCcEEEEEEEeeCc---------eEEEEECC
Q 006694 302 QGYLSVMTLRLGEE---------GIQMTVDG 323 (635)
Q Consensus 302 ~G~~F~l~i~~~~e---------gf~i~VnG 323 (635)
+|+.|+|+|.+... .++|+|||
T Consensus 95 RGKsFtltItv~t~PpqvAty~~AIKVTVDG 125 (135)
T PF00853_consen 95 RGKSFTLTITVFTNPPQVATYHRAIKVTVDG 125 (135)
T ss_dssp TTSEEEEEEEE-SSS-EEEEECCEEEEESS-
T ss_pred CccceEEEEEEeCCCchHHhheeeEEEEecC
Confidence 69999999998754 55666666
Done!