BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006695
(635 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 23/159 (14%)
Query: 183 LTEFPQISGNITDL---ILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKS 239
L +FP + ++ L + + E+P + + LE L + R L+ L SI L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNP-LRALPASIASLNR 151
Query: 240 LHVLVLDDCSKLERFPEILEKMES---------VKCISLERTAITELPSSFANLEGLKDL 290
L L + C +L PE L ++ ++ + LE T I LP+S ANL+ LK L
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211
Query: 291 YIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCS 329
I S L +L +I L +L L L+ C+
Sbjct: 212 KIRNSPL----------SALGPAIHHLPKLEELDLRGCT 240
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Query: 78 NLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLT 137
NL L L ++ + + LK + I NS P + P LE +L+ C L
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR 243
Query: 138 CVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPI-KIDFSSCFNLTEFPQI 189
P L L + C +L + P ++H ++ + K+D C NL+ P +
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 45/193 (23%)
Query: 132 NCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIK-IDFSSCFNLTEFPQ-- 188
+ L +P + Q F L L LR+ P+++ ++ ++ + +C LTE P+
Sbjct: 112 DAAGLXELPDTXQQFAGLETLTL-ARNPLRALPASIASLNRLRELSIRACPELTELPEPL 170
Query: 189 ----ISG------NITDLILSETAIQEVPSSIECLTNL---------------------- 216
SG N+ L L T I+ +P+SI L NL
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK 230
Query: 217 -EKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFP------EILEKMESVKCISL 269
E+L + C L+ L L+L DCS L P LEK++ C++L
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290
Query: 270 ER--TAITELPSS 280
R + I +LP++
Sbjct: 291 SRLPSLIAQLPAN 303
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 192 NITDLILSETAIQEV-PSSIECLTNLEKLYINRCMRLKRLS-TSICKLKSLHVLVLDDCS 249
N+T L L A+ + ++ LT LE+L ++ +L+ + T+ L LH L LD C
Sbjct: 56 NLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCG 115
Query: 250 KLERFPEILEKMESVKCISLERTAITELP-SSFANLEGLKDLYIGGSSL 297
E P + + +++ + L+ + LP ++F +L L L++ G+ +
Sbjct: 116 LQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 192 NITDLILSETAIQEV-PSSIECLTNLEKLYINRCMRLKRLS-TSICKLKSLHVLVLDDCS 249
N+T L L + + ++ L LE+L ++ +L+ + + L LH L LD C
Sbjct: 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116
Query: 250 KLERFPEILEKMESVKCISLERTAITELP-SSFANLEGLKDLYIGGSSL 297
E P + + +++ + L+ A+ LP +F +L L L++ G+ +
Sbjct: 117 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 165
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 192 NITDLILSETAIQEV-PSSIECLTNLEKLYINRCMRLKRLS-TSICKLKSLHVLVLDDCS 249
N+T L L + + ++ L LE+L ++ +L+ + + L LH L LD C
Sbjct: 56 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 115
Query: 250 KLERFPEILEKMESVKCISLERTAITELP-SSFANLEGLKDLYIGGSSL 297
E P + + +++ + L+ A+ LP +F +L L L++ G+ +
Sbjct: 116 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI 164
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 24/163 (14%)
Query: 187 PQISGNITDLILSETAIQEVP-SSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVL 245
P + + T L LSE + +++ T L +L ++RC L +L +L VL
Sbjct: 27 PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRC-ELTKLQVD----GTLPVLGT 81
Query: 246 DDCS--KLERFPEILEKMESVKCISLERTAITELP-SSFANLEGLKDLYIGGSSLR---- 298
D S +L+ P + + + ++ + + +T LP + L L++LY+ G+ L+
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 299 ----------QLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSM 330
+L+L+ ND LPA + L L +L L++ S+
Sbjct: 142 GLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 16/75 (21%)
Query: 267 ISLERTAITELPSS-FANLEGLKDLYIGG--------------SSLRQLNLSRNDSESLP 311
+ LE ++ LP+ F L L LY+GG +SL LNLS N +SLP
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 312 ASI-TQLSQLRSLHL 325
+ +L+QL+ L L
Sbjct: 93 NGVFDKLTQLKELAL 107
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 22/148 (14%)
Query: 156 GCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSET---AIQEVPSSIEC 212
G SL P +L + +SC +LTE P++ ++ L++ A+ ++P +E
Sbjct: 82 GLSSLPELPPHLESL------VASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEY 135
Query: 213 LTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERT 272
L + N+ +L L S LK + V D + L++ P++ S++ I+
Sbjct: 136 L----GVSNNQLEKLPELQNS-SFLKIIDV----DNNSLKKLPDL---PPSLEFIAAGNN 183
Query: 273 AITELPSSFANLEGLKDLYIGGSSLRQL 300
+ ELP NL L +Y +SL++L
Sbjct: 184 QLEELP-ELQNLPFLTAIYADNNSLKKL 210
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 102/227 (44%), Gaps = 25/227 (11%)
Query: 102 LKYVDIHNSQYLIRMPDLSETPNLERTNLKN--CINLTCVPSSVQNFNHLSMLCFEGCKS 159
L+Y+ + N+Q L ++P+L + L+ ++ N L +P S++ G
Sbjct: 133 LEYLGVSNNQ-LEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE-------FIAAGNNQ 184
Query: 160 LRSFP--SNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLE 217
L P NL F++ I D +S L + P + ++ ++ ++E+P ++ L L
Sbjct: 185 LEELPELQNLPFLTAIYADNNS---LKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLT 240
Query: 218 KLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITEL 277
+Y + + LK L L++L+V + L PE+ + + + + ++EL
Sbjct: 241 TIYADNNL-LKTLPDLPPSLEALNV----RDNYLTDLPELPQSLTFLDVSENIFSGLSEL 295
Query: 278 PSSFANLEG----LKDLYIGGSSLRQLNLSRNDSESLPASITQLSQL 320
P + L ++ L SL +LN+S N LPA +L +L
Sbjct: 296 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERL 342
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 21/141 (14%)
Query: 181 FNLTEFPQ-ISGNITDLILSETAI---QEVPSSIECLTNLEKLYINRC-MRLKRLSTSIC 235
NL+ P + IT L +++ A+ E+P+S+E Y++ C RL L
Sbjct: 69 LNLSSLPDNLPPQITVLEITQNALISLPELPASLE--------YLDACDNRLSTLPELPA 120
Query: 236 KLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLE----GLKDLY 291
LK L V D ++L PE+ +E + + + T + ELP+S L L L
Sbjct: 121 SLKHLDV----DNNQLTXLPELPALLEYINADNNQLTXLPELPTSLEVLSVRNNQLTFLP 176
Query: 292 IGGSSLRQLNLSRNDSESLPA 312
SL L++S N ESLPA
Sbjct: 177 ELPESLEALDVSTNLLESLPA 197
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 206 VPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVK 265
+PSS+ L+ L L + M + + +K+L L+LD P L ++
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 490
Query: 266 CISLERTAIT-ELPSSFANLEGLKDLYIGGSS 296
ISL +T E+P LE L L + +S
Sbjct: 491 WISLSNNRLTGEIPKWIGRLENLAILKLSNNS 522
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 206 VPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVK 265
+PSS+ L+ L L + M + + +K+L L+LD P L ++
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493
Query: 266 CISLERTAIT-ELPSSFANLEGLKDLYIGGSS 296
ISL +T E+P LE L L + +S
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 260 KMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQ 319
K + + + L ++TELP+ NL S+LR L+LS N SLPA + Q
Sbjct: 245 KYDFLTRLYLNGNSLTELPAEIKNL----------SNLRVLDLSHNRLTSLPAELGSCFQ 294
Query: 320 LRSLHLKD 327
L+ + D
Sbjct: 295 LKYFYFFD 302
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 22/152 (14%)
Query: 193 ITDLILSETAIQEVPS-SIECLTNLEKLYINRCMRLKRLSTSICK-LKSLHVLVLDDCSK 250
+ +L L I+ +PS + + +L +L + RL+ +S + + L +L L L C+
Sbjct: 109 LRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCN- 167
Query: 251 LERFPEI--LEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGS------------- 295
L+ P + L ++E ++ +S R + P SF L L+ L++ +
Sbjct: 168 LKDIPNLTALVRLEELE-LSGNRLDLIR-PGSFQGLTSLRKLWLMHAQVATIERNAFDDL 225
Query: 296 -SLRQLNLSRNDSESLPASI-TQLSQLRSLHL 325
SL +LNLS N+ SLP + T L +L +HL
Sbjct: 226 KSLEELNLSHNNLMSLPHDLFTPLHRLERVHL 257
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 61/151 (40%), Gaps = 46/151 (30%)
Query: 202 AIQEVPSSIEC-LTNLEKL-YINR-----CMRLKRLSTSICKLKSLHVLV-LDDCSKLE- 252
A VPS + L L+KL YI+ LK L+ +C +K + L L +LE
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEM 225
Query: 253 ---RFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYI--------------GGS 295
FPEI P SF L LK L++ G +
Sbjct: 226 SGNHFPEIR-------------------PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266
Query: 296 SLRQLNLSRNDSESLPASI-TQLSQLRSLHL 325
SL +LNL+ N+ SLP + T L L LHL
Sbjct: 267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 188 QISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLK-RLSTSICKLKSLHVLVLD 246
Q S + T + E ++ VP+ I T + LYIN+ +L+ + S+ +L L++ V
Sbjct: 16 QCSCSGTTVNCQERSLASVPAGIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAV-- 73
Query: 247 DCSKLERFP-EILEKMESVKCISLERTAITELP-SSFANLEGLKDLYI 292
++L P + +K+ + ++L + +P F NL+ L +Y+
Sbjct: 74 --NQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYL 119
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 22/152 (14%)
Query: 193 ITDLILSETAIQEVPS-SIECLTNLEKLYINRCMRLKRLSTSICK-LKSLHVLVLDDCSK 250
+ +L L I+ +PS + + +L +L + RL+ +S + + L +L L L C+
Sbjct: 109 LRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCN- 167
Query: 251 LERFPEI--LEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGS------------- 295
L+ P + L ++E ++ +S R + P SF L L+ L++ +
Sbjct: 168 LKDIPNLTALVRLEELE-LSGNRLDLIR-PGSFQGLTSLRKLWLMHAQVATIERNAFDDL 225
Query: 296 -SLRQLNLSRNDSESLPASI-TQLSQLRSLHL 325
SL +LNLS N+ SLP + T L +L +HL
Sbjct: 226 KSLEELNLSHNNLMSLPHDLFTPLHRLERVHL 257
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 34/135 (25%)
Query: 215 NLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAI 274
N+ + +++R LKR + +L + +L D M ++ + L R I
Sbjct: 113 NITRQHLDRLHGLKRFRFTTRRLTHIPANLLTD-------------MRNLSHLEL-RANI 158
Query: 275 TELPSS-FANLEGLKDLYIGGSSLRQ--------------LNLSRNDSESLPASI-TQLS 318
E+PS F +LE L+ + G + LRQ LNL+ N +S+P I +L+
Sbjct: 159 EEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLT 218
Query: 319 QLRSLHLK----DCS 329
L+ + L DCS
Sbjct: 219 SLQKIWLHTNPWDCS 233
>pdb|1D5Y|A Chain A, Crystal Structure Of The E. Coli Rob Transcription Factor
In Complex With Dna
pdb|1D5Y|B Chain B, Crystal Structure Of The E. Coli Rob Transcription Factor
In Complex With Dna
pdb|1D5Y|C Chain C, Crystal Structure Of The E. Coli Rob Transcription Factor
In Complex With Dna
pdb|1D5Y|D Chain D, Crystal Structure Of The E. Coli Rob Transcription Factor
In Complex With Dna
Length = 292
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 17 AFANMPNLRFLKFYMPEHNGV-----PIMISKVHLDQGLEYLPN---ELRYLHWHEYPSK 68
AF P LR +F MPEH V P++ LE + + E+RY WH++
Sbjct: 109 AFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLGN 168
Query: 69 A 69
A
Sbjct: 169 A 169
>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad
Length = 246
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 210 IECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLER 253
IE N+E+ Y RC + + I KL+S V + DDC+ L R
Sbjct: 113 IELYGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIR 156
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 277 LPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHL 325
+PSS ANL L LYIGG + N +P +I +L+QL L++
Sbjct: 68 IPSSLANLPYLNFLYIGGIN--------NLVGPIPPAIAKLTQLHYLYI 108
>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|2H59|B Chain B, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose
pdb|3JR3|A Chain A, Sir2 Bound To Acetylated Peptide
Length = 246
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 210 IECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLER 253
IE N+E+ Y RC + + I KL+S V + DDC+ L R
Sbjct: 113 IELAGNVEEYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIR 156
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 17/100 (17%)
Query: 237 LKSLHVLVLDDCSKLERF-PEILEKMESVKCISLERTAITEL-PSSFANLEGLKDLYIGG 294
L SL VL + S E F P+I ++ ++ + L + + +L P++F +L
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL---------- 493
Query: 295 SSLRQLNLSRNDSESLPASI-TQLSQLRSLHLK----DCS 329
SSL+ LN++ N +S+P I +L+ L+ + L DCS
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,249,171
Number of Sequences: 62578
Number of extensions: 741084
Number of successful extensions: 1899
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1871
Number of HSP's gapped (non-prelim): 46
length of query: 635
length of database: 14,973,337
effective HSP length: 105
effective length of query: 530
effective length of database: 8,402,647
effective search space: 4453402910
effective search space used: 4453402910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)