Query 006695
Match_columns 635
No_of_seqs 774 out of 4093
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 13:09:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 3.8E-53 8.2E-58 505.7 44.0 519 1-584 537-1100(1153)
2 PLN00113 leucine-rich repeat r 100.0 6.9E-34 1.5E-38 339.2 23.3 366 2-376 144-560 (968)
3 PLN00113 leucine-rich repeat r 100.0 9.9E-34 2.1E-38 337.8 24.6 367 2-377 73-489 (968)
4 KOG4194 Membrane glycoprotein 100.0 5.6E-31 1.2E-35 271.5 6.5 336 3-378 83-431 (873)
5 KOG4194 Membrane glycoprotein 100.0 1E-30 2.2E-35 269.6 4.6 348 3-393 57-425 (873)
6 KOG0444 Cytoskeletal regulator 99.9 1.1E-29 2.3E-34 263.3 -7.0 339 3-360 12-383 (1255)
7 KOG0444 Cytoskeletal regulator 99.9 4.2E-29 9E-34 259.0 -4.7 314 2-336 59-380 (1255)
8 KOG0472 Leucine-rich repeat pr 99.9 8.5E-30 1.9E-34 252.6 -11.8 326 3-336 50-475 (565)
9 PLN03210 Resistant to P. syrin 99.9 4.9E-23 1.1E-27 247.1 25.4 291 15-335 581-910 (1153)
10 KOG0472 Leucine-rich repeat pr 99.9 1.8E-26 4E-31 229.0 -3.8 323 3-352 165-541 (565)
11 KOG0618 Serine/threonine phosp 99.9 5E-26 1.1E-30 246.9 -2.6 378 2-396 25-488 (1081)
12 PRK15387 E3 ubiquitin-protein 99.9 4.4E-21 9.5E-26 215.0 17.0 241 56-336 223-463 (788)
13 KOG0618 Serine/threonine phosp 99.8 7.8E-23 1.7E-27 222.3 -3.9 323 3-373 183-510 (1081)
14 PRK15387 E3 ubiquitin-protein 99.8 3.3E-20 7.2E-25 208.0 16.7 257 56-376 202-458 (788)
15 PRK15370 E3 ubiquitin-protein 99.8 6.5E-19 1.4E-23 198.8 12.9 245 55-331 178-428 (754)
16 PRK15370 E3 ubiquitin-protein 99.8 6.3E-18 1.4E-22 190.9 14.4 249 22-308 178-428 (754)
17 KOG4237 Extracellular matrix p 99.7 8.3E-20 1.8E-24 181.8 -8.3 364 2-378 71-479 (498)
18 KOG4237 Extracellular matrix p 99.6 2.2E-17 4.8E-22 164.7 -5.4 269 52-330 64-358 (498)
19 KOG0617 Ras suppressor protein 99.6 3.9E-17 8.5E-22 145.3 -4.7 170 68-316 24-194 (264)
20 cd00116 LRR_RI Leucine-rich re 99.5 8.8E-16 1.9E-20 159.9 0.2 235 76-331 22-291 (319)
21 cd00116 LRR_RI Leucine-rich re 99.5 8.1E-16 1.7E-20 160.1 -0.4 270 82-374 3-318 (319)
22 KOG0617 Ras suppressor protein 99.5 1.6E-16 3.5E-21 141.5 -5.0 175 116-350 26-201 (264)
23 KOG0532 Leucine-rich repeat (L 99.1 1E-11 2.2E-16 129.8 -2.5 212 59-329 54-271 (722)
24 KOG1259 Nischarin, modulator o 99.0 8.1E-11 1.8E-15 114.1 2.6 128 191-332 284-413 (490)
25 COG4886 Leucine-rich repeat (L 99.0 3.2E-10 7E-15 121.8 5.9 178 77-258 116-297 (394)
26 COG4886 Leucine-rich repeat (L 99.0 6E-10 1.3E-14 119.7 6.6 194 81-280 97-295 (394)
27 KOG3207 Beta-tubulin folding c 98.9 1.4E-10 3E-15 118.1 0.1 211 97-332 118-340 (505)
28 KOG4658 Apoptotic ATPase [Sign 98.9 7.6E-10 1.6E-14 127.7 5.0 300 22-358 545-866 (889)
29 KOG4658 Apoptotic ATPase [Sign 98.9 5.6E-10 1.2E-14 128.8 3.6 123 56-179 524-651 (889)
30 PF14580 LRR_9: Leucine-rich r 98.9 1.2E-09 2.6E-14 101.8 4.9 122 214-349 19-150 (175)
31 KOG0532 Leucine-rich repeat (L 98.9 7.3E-11 1.6E-15 123.6 -5.7 212 3-249 55-271 (722)
32 PF14580 LRR_9: Leucine-rich r 98.8 3E-09 6.4E-14 99.2 5.0 90 66-158 8-99 (175)
33 KOG3207 Beta-tubulin folding c 98.8 1.4E-09 2.9E-14 111.0 0.7 204 57-308 123-339 (505)
34 KOG1259 Nischarin, modulator o 98.7 2.4E-09 5.2E-14 104.1 1.1 194 56-279 215-416 (490)
35 KOG1909 Ran GTPase-activating 98.6 3.4E-09 7.4E-14 105.4 -1.3 244 75-330 28-310 (382)
36 KOG1909 Ran GTPase-activating 98.6 8.4E-09 1.8E-13 102.7 1.0 233 55-308 30-311 (382)
37 PRK15386 type III secretion pr 98.6 1.7E-07 3.7E-12 97.8 10.1 129 192-349 53-187 (426)
38 PLN03150 hypothetical protein; 98.6 1.1E-07 2.4E-12 107.5 9.2 105 240-354 420-530 (623)
39 PRK15386 type III secretion pr 98.6 1.9E-07 4.1E-12 97.5 8.9 160 210-401 48-217 (426)
40 PLN03150 hypothetical protein; 98.5 1.4E-07 3E-12 106.7 8.2 112 215-336 419-533 (623)
41 KOG0531 Protein phosphatase 1, 98.5 1.7E-08 3.8E-13 108.9 -1.3 98 57-157 97-196 (414)
42 PF13855 LRR_8: Leucine rich r 98.5 1.9E-07 4.1E-12 71.4 4.4 58 192-249 2-60 (61)
43 KOG0531 Protein phosphatase 1, 98.4 2.4E-08 5.2E-13 107.8 -1.2 238 76-353 71-319 (414)
44 PF13855 LRR_8: Leucine rich r 98.4 1.9E-07 4E-12 71.5 3.7 61 214-274 1-61 (61)
45 KOG2120 SCF ubiquitin ligase, 98.4 3.3E-09 7.1E-14 103.2 -7.9 170 101-272 186-373 (419)
46 KOG2120 SCF ubiquitin ligase, 98.3 1.4E-08 3E-13 98.9 -7.2 187 77-265 185-390 (419)
47 KOG1859 Leucine-rich repeat pr 98.2 2E-08 4.4E-13 108.1 -9.0 125 192-330 165-291 (1096)
48 KOG1859 Leucine-rich repeat pr 98.0 6.8E-08 1.5E-12 104.2 -9.4 55 78-133 165-219 (1096)
49 KOG2982 Uncharacterized conser 98.0 2.4E-06 5.2E-11 83.6 1.3 102 57-158 47-157 (418)
50 KOG4341 F-box protein containi 97.8 1.2E-06 2.6E-11 89.4 -3.4 246 100-353 138-415 (483)
51 KOG4341 F-box protein containi 97.7 1.2E-06 2.6E-11 89.4 -5.6 270 77-353 138-440 (483)
52 PF12799 LRR_4: Leucine Rich r 97.7 5.5E-05 1.2E-09 53.3 3.7 35 296-330 2-36 (44)
53 PF12799 LRR_4: Leucine Rich r 97.6 3.5E-05 7.6E-10 54.3 2.6 37 77-113 1-37 (44)
54 KOG1644 U2-associated snRNP A' 97.5 0.00023 4.9E-09 66.4 6.1 103 215-327 43-149 (233)
55 KOG1644 U2-associated snRNP A' 97.5 0.00026 5.7E-09 66.0 6.3 107 50-156 37-149 (233)
56 KOG3665 ZYG-1-like serine/thre 97.5 4E-05 8.6E-10 86.9 1.1 107 168-275 146-263 (699)
57 KOG2982 Uncharacterized conser 97.4 5.6E-05 1.2E-09 74.2 1.6 186 122-335 70-266 (418)
58 KOG4579 Leucine-rich repeat (L 97.4 2.4E-05 5.2E-10 68.2 -1.6 65 259-332 50-114 (177)
59 KOG4579 Leucine-rich repeat (L 97.3 9.5E-06 2.1E-10 70.7 -4.6 77 57-133 55-133 (177)
60 COG5238 RNA1 Ran GTPase-activa 97.2 0.00025 5.5E-09 68.9 3.4 37 97-133 89-130 (388)
61 KOG3665 ZYG-1-like serine/thre 96.7 0.00079 1.7E-08 76.5 2.8 86 188-275 145-233 (699)
62 KOG2739 Leucine-rich acidic nu 96.7 0.00081 1.8E-08 65.4 1.8 59 295-353 91-157 (260)
63 COG5238 RNA1 Ran GTPase-activa 96.4 0.00085 1.8E-08 65.3 0.3 34 76-109 29-67 (388)
64 KOG2739 Leucine-rich acidic nu 96.0 0.0033 7.1E-08 61.2 2.0 100 57-156 45-152 (260)
65 KOG2123 Uncharacterized conser 96.0 0.00058 1.3E-08 66.6 -3.2 96 237-345 18-123 (388)
66 PF13306 LRR_5: Leucine rich r 95.9 0.033 7.3E-07 49.1 7.7 106 12-132 2-112 (129)
67 KOG1947 Leucine rich repeat pr 95.8 0.0043 9.3E-08 68.2 1.9 34 320-353 403-441 (482)
68 KOG2123 Uncharacterized conser 95.6 0.00045 9.8E-09 67.4 -5.6 79 57-137 21-102 (388)
69 PF13306 LRR_5: Leucine rich r 95.1 0.062 1.3E-06 47.3 6.8 14 210-223 31-44 (129)
70 PF00560 LRR_1: Leucine Rich R 95.1 0.0089 1.9E-07 35.1 0.8 18 297-314 2-19 (22)
71 PF00560 LRR_1: Leucine Rich R 94.6 0.019 4.2E-07 33.6 1.3 21 192-212 1-21 (22)
72 PF13504 LRR_7: Leucine rich r 93.5 0.051 1.1E-06 29.6 1.5 14 297-310 3-16 (17)
73 KOG1947 Leucine rich repeat pr 93.2 0.025 5.4E-07 62.1 0.1 111 213-331 187-308 (482)
74 PF13504 LRR_7: Leucine rich r 93.2 0.065 1.4E-06 29.2 1.6 17 262-278 1-17 (17)
75 PF07725 LRR_3: Leucine Rich R 90.7 0.18 4E-06 28.6 1.6 20 78-97 1-20 (20)
76 KOG0473 Leucine-rich repeat pr 89.9 0.011 2.4E-07 56.5 -6.2 78 57-134 44-122 (326)
77 smart00369 LRR_TYP Leucine-ric 87.2 0.47 1E-05 28.9 1.9 19 295-313 2-20 (26)
78 smart00370 LRR Leucine-rich re 87.2 0.47 1E-05 28.9 1.9 19 295-313 2-20 (26)
79 smart00369 LRR_TYP Leucine-ric 86.9 0.54 1.2E-05 28.6 2.0 21 261-281 1-21 (26)
80 smart00370 LRR Leucine-rich re 86.9 0.54 1.2E-05 28.6 2.0 21 261-281 1-21 (26)
81 KOG4308 LRR-containing protein 84.3 0.021 4.6E-07 62.3 -8.9 168 210-378 111-305 (478)
82 KOG4308 LRR-containing protein 80.3 0.037 7.9E-07 60.4 -9.0 156 192-352 116-303 (478)
83 KOG3864 Uncharacterized conser 78.7 0.56 1.2E-05 44.3 -0.4 77 295-371 101-184 (221)
84 KOG3864 Uncharacterized conser 78.2 0.71 1.5E-05 43.7 0.1 33 295-327 151-185 (221)
85 smart00364 LRR_BAC Leucine-ric 76.5 1.7 3.7E-05 26.6 1.4 18 295-312 2-19 (26)
86 smart00364 LRR_BAC Leucine-ric 71.9 2.6 5.7E-05 25.8 1.4 17 78-94 3-19 (26)
87 KOG0473 Leucine-rich repeat pr 71.1 0.11 2.4E-06 49.9 -7.2 83 75-158 40-122 (326)
88 smart00365 LRR_SD22 Leucine-ri 67.4 4.3 9.4E-05 24.8 1.7 16 77-92 2-17 (26)
89 KOG3763 mRNA export factor TAP 64.6 3.9 8.6E-05 44.5 1.9 79 259-345 215-307 (585)
90 PF13516 LRR_6: Leucine Rich r 55.7 4.2 9.1E-05 24.0 0.2 13 214-226 2-14 (24)
91 smart00367 LRR_CC Leucine-rich 49.2 13 0.00027 22.5 1.6 13 318-330 2-14 (26)
92 smart00368 LRR_RI Leucine rich 45.0 18 0.00039 22.4 1.8 14 295-308 2-15 (28)
93 KOG4242 Predicted myosin-I-bin 36.5 1.2E+02 0.0025 33.0 7.2 59 100-158 214-279 (553)
94 KOG3763 mRNA export factor TAP 35.7 22 0.00047 39.0 1.8 15 467-481 444-458 (585)
95 TIGR00864 PCC polycystin catio 28.8 43 0.00093 44.0 3.1 32 4-35 1-32 (2740)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.8e-53 Score=505.73 Aligned_cols=519 Identities=30% Similarity=0.485 Sum_probs=387.0
Q ss_pred CeeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCce
Q 006695 1 MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLV 80 (635)
Q Consensus 1 i~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~ 80 (635)
|+||++......+.+.+|.+|++|++|.++.+.... .....+++|+++..+|.+||.|+|.+|+++.+|..|.+.+|+
T Consensus 537 i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~--~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~ 614 (1153)
T PLN03210 537 ITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQ--KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLV 614 (1153)
T ss_pred EEeccCccceeeecHHHHhcCccccEEEEecccccc--cccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCc
Confidence 568888888788999999999999999998765431 123446789999999999999999999999999999999999
Q ss_pred EEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCC
Q 006695 81 KLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSL 160 (635)
Q Consensus 81 ~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l 160 (635)
+|+|++|+++.+|.++..+++|+.|+|+++..++.+|+++.+++|+.|+|++|..+..+|.+++.+++|+.|++++|..+
T Consensus 615 ~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L 694 (1153)
T PLN03210 615 KLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694 (1153)
T ss_pred EEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc
Confidence 99999999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCcc-----------------------
Q 006695 161 RSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLE----------------------- 217 (635)
Q Consensus 161 ~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~----------------------- 217 (635)
+.+|..+.+++|+.|++++|..++.+|....+|++|++++|.++.+|..+ .+++|+
T Consensus 695 ~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~ 773 (1153)
T PLN03210 695 EILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLM 773 (1153)
T ss_pred CccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhh
Confidence 99999889999999999999999999999999999999999999998754 344444
Q ss_pred --------EEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCC-ccccCchhcccccch
Q 006695 218 --------KLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTA-ITELPSSFANLEGLK 288 (635)
Q Consensus 218 --------~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~ 288 (635)
.|+|++|.....+|..++++++|+.|+|++|..++.+|... .+++|+.|++++|. +..+|.
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--------- 843 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--------- 843 (1153)
T ss_pred hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---------
Confidence 44455454444455555555555555555555444444433 44555555555442 222222
Q ss_pred hhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCCC---CCccceecccccccccccCccccCcccc
Q 006695 289 DLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPEL---PQSLELLDAENCKQLQFIPEILSGLEEV 365 (635)
Q Consensus 289 ~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~l---~~sL~~L~l~~c~~l~~~~~~~~~L~~L 365 (635)
...+|+.|+|++|.++.+|.++..+++|+.|+|++|+.++.+|.. +++|+.|++++|..+..++- ...+.
T Consensus 844 ----~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l--~~~~~- 916 (1153)
T PLN03210 844 ----ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW--NGSPS- 916 (1153)
T ss_pred ----cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC--CCCch-
Confidence 136788999999999999999999999999999999999988864 46788889999988876542 11111
Q ss_pred chhhhhhhhhcccccccCCccceEEEcCCcccchhhhhHHHHHHHHHHHHHHHHHhhhcccCcccccCCceeecCCCCCC
Q 006695 366 DASVLEKATFLNSAFTLNSACVKFVFSNCLKLNEKANNEILADSQRWIQHMAIATFRLFDENKYSHIKGPSIILPGSEIP 445 (635)
Q Consensus 366 ~~l~L~~n~~~~~~~~l~~~~~~l~~~nC~~L~~~~~~~i~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP 445 (635)
....+..|... .++. ...+.|.||++|++.+. +|.. . ....+++||.++|
T Consensus 917 ~~~~~~~n~~~----~~p~-~~~l~f~nC~~L~~~a~----------l~~~--------------~-~~~~~~l~g~evp 966 (1153)
T PLN03210 917 EVAMATDNIHS----KLPS-TVCINFINCFNLDQEAL----------LQQQ--------------S-IFKQLILSGEEVP 966 (1153)
T ss_pred hhhhhcccccc----cCCc-hhccccccccCCCchhh----------hccc--------------c-cceEEECCCccCc
Confidence 12222222111 1111 24578999999987652 1110 0 3346789999999
Q ss_pred cccccCCCCCeEE-EeCCCCCC-CCcceeEEEEEEeecCC-CCCCceEEEEEEEEeecCccceeeeecceEecccCcccc
Q 006695 446 EWFSNQSSGSSIT-VKPPQNCC-RNLIGFALCAVLDYNER-IPSGFSSVFCEYRFEVNALSGIEHVYENCLILASTHELI 522 (635)
Q Consensus 446 ~wf~~~~~g~si~-i~lp~~~~-~~~~gf~~c~v~~~~~~-~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (635)
+||.||+.|++++ |++|+.|+ ..|.||++|+|+++.+. .....+++.|.|+|++..+..+.. .
T Consensus 967 ~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~--------------~ 1032 (1153)
T PLN03210 967 SYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHFDS--------------P 1032 (1153)
T ss_pred hhccCCcccceeeeeccCCcccCCCccceEEEEEEecCccccCCCceeEEEEEEEECCCCCcccc--------------C
Confidence 9999999999998 99999999 78999999999988554 223467889999998765543221 2
Q ss_pred CCCeEEEEEecCCCCCCCCCcccc---cccccccCcCceEEEEEEe----CceEEEeeeeEEeecCCCC
Q 006695 523 DSDHVVLGFNPCWNVGDGDDHRIF---LKFFDIHKHHTAISFEFIC----DSYKVKSCGVCPVYANPSE 584 (635)
Q Consensus 523 ~sdh~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~f~f~~----~~~~VK~CGv~l~y~~d~~ 584 (635)
..+|+|+.|....++..+...... .+...++ .+.+|+|+|.. ..++||+||||++|+.+..
T Consensus 1033 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~cg~~~~~~~~~~ 1100 (1153)
T PLN03210 1033 YQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLAEL-NYDHVDIQFRLTNKNSQLKLKGCGIRLSEDDSSL 1100 (1153)
T ss_pred CCceeEeeeccccceEEecccccccccccchhcc-CCceeeEEEEEecCCCCeEEEeeeEEEeccCCCc
Confidence 345555555543332110000000 0001223 45666666654 3469999999999966554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.9e-34 Score=339.15 Aligned_cols=366 Identities=21% Similarity=0.232 Sum_probs=178.0
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCC-CCCCCC-CCCCc
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSK-ALPFDF-EPENL 79 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~-~lp~~~-~l~~L 79 (635)
+|||++|.+....+..|+++++|++|++++|.+.+ .+|..+..+++ |++|++++|.+. .+|..+ .+++|
T Consensus 144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~--------~~p~~~~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG--------KIPNSLTNLTS-LEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred EEECcCCcccccCChHHhcCCCCCEEECccCcccc--------cCChhhhhCcC-CCeeeccCCCCcCcCChHHcCcCCc
Confidence 57888888776777778888888888888877652 23444444443 666666666543 344444 45566
Q ss_pred eEEEcCCCCCc-cccccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCC
Q 006695 80 VKLNLPYSKVV-QIWEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGC 157 (635)
Q Consensus 80 ~~L~L~~n~l~-~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~ 157 (635)
++|++++|++. .+|..+..+++|++|++++|.+...+| .++++++|++|++++|...+.+|..+..+++|+.|++++|
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence 66666666555 455555556666666666655554444 3555555555555555555555555555555555555555
Q ss_pred CCCCccCCCC-CCCCCcEEecCCCCCCC------------------------ccCcc---cCCcceEEecccccc-ccCc
Q 006695 158 KSLRSFPSNL-HFMSPIKIDFSSCFNLT------------------------EFPQI---SGNITDLILSETAIQ-EVPS 208 (635)
Q Consensus 158 ~~l~~lp~~~-~l~~L~~L~l~~c~~l~------------------------~~p~~---~~~L~~L~L~~n~i~-~lp~ 208 (635)
.....+|..+ .+++|+.|++++|.... .+|.. ..+|+.|++++|.++ .+|.
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~ 374 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE 374 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence 4444444333 34444444444443332 33321 123444444444443 2233
Q ss_pred ccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccc-cCchhcccccc
Q 006695 209 SIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITE-LPSSFANLEGL 287 (635)
Q Consensus 209 ~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L 287 (635)
++..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.++. +|..+..+++|
T Consensus 375 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 454 (968)
T PLN00113 375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL 454 (968)
T ss_pred hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCC
Confidence 33333333333333333333334444444444444444444444444444444444444444444442 22222222222
Q ss_pred hhhcc-------------CCCCccEEEcCCCCCC-cccccccCCCCccEEeccCCCCCCcCCCC---CCccceecccccc
Q 006695 288 KDLYI-------------GGSSLRQLNLSRNDSE-SLPASITQLSQLRSLHLKDCSMLSSLPEL---PQSLELLDAENCK 350 (635)
Q Consensus 288 ~~l~~-------------~~~~L~~L~Ls~n~~~-~lp~~l~~l~~L~~L~L~~n~~l~~lp~l---~~sL~~L~l~~c~ 350 (635)
..+.. ..++|+.|++++|++. .+|..+..+++|+.|+|++|++.+.+|+. +++|+.|++++|.
T Consensus 455 ~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 534 (968)
T PLN00113 455 QMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534 (968)
T ss_pred cEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc
Confidence 21111 1133444444444432 33434444444444444444444444431 2344444444444
Q ss_pred cccccCccccCccccchhhhhhhhhc
Q 006695 351 QLQFIPEILSGLEEVDASVLEKATFL 376 (635)
Q Consensus 351 ~l~~~~~~~~~L~~L~~l~L~~n~~~ 376 (635)
..+.+|..+..+++|+.++|++|++.
T Consensus 535 l~~~~p~~~~~l~~L~~L~Ls~N~l~ 560 (968)
T PLN00113 535 LSGQIPASFSEMPVLSQLDLSQNQLS 560 (968)
T ss_pred ccccCChhHhCcccCCEEECCCCccc
Confidence 44444444444444444444444443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.9e-34 Score=337.81 Aligned_cols=367 Identities=18% Similarity=0.224 Sum_probs=199.8
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceE
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVK 81 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~ 81 (635)
.|||++|.+....+.+|.++++|+.|+|++|.+++ .+|.++.....+|++|++++|.+....+...+++|++
T Consensus 73 ~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~--------~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~ 144 (968)
T PLN00113 73 SIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG--------PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLET 144 (968)
T ss_pred EEEecCCCccccCChHHhCCCCCCEEECCCCccCC--------cCChHHhccCCCCCEEECcCCccccccCccccCCCCE
Confidence 57888888777778888888888888888887752 3444443222346666666666542222223556666
Q ss_pred EEcCCCCCc-cccccCCCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCC
Q 006695 82 LNLPYSKVV-QIWEGKKRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKS 159 (635)
Q Consensus 82 L~L~~n~l~-~l~~~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~ 159 (635)
|++++|.+. .+|..+..+++|++|+|++|.+...+|+ ++++++|++|+|++|...+.+|..++.+++|+.|++++|..
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 666666655 4555566666666666666665555553 55666666666666655555565666666666666665555
Q ss_pred CCccCCCC-CCCCCcEEecCCCCCCCccCccc---CCcceEEecccccc-ccCcccccCCCccEEEeecccccccchhcc
Q 006695 160 LRSFPSNL-HFMSPIKIDFSSCFNLTEFPQIS---GNITDLILSETAIQ-EVPSSIECLTNLEKLYINRCMRLKRLSTSI 234 (635)
Q Consensus 160 l~~lp~~~-~l~~L~~L~l~~c~~l~~~p~~~---~~L~~L~L~~n~i~-~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~ 234 (635)
...+|..+ .+++|+.|++++|.....+|..+ .+|++|++++|.+. .+|.++..+++|++|++++|.+.+.+|..+
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH
Confidence 54555444 45555555555554433444222 34555555555544 244445555555555555555544445444
Q ss_pred cCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcc-ccCchhcccccch-------------------------
Q 006695 235 CKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAIT-ELPSSFANLEGLK------------------------- 288 (635)
Q Consensus 235 ~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~------------------------- 288 (635)
.++++|+.|++++|.+.+..|..+..+++|+.|++++|.++ .+|..++.+++|.
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~ 384 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK 384 (968)
T ss_pred cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCE
Confidence 45555555555555444444444444444444444444444 3333333322211
Q ss_pred -------------hhccCCCCccEEEcCCCCCC-cccccccCCCCccEEeccCCCCCCcCCC---CCCccceeccccccc
Q 006695 289 -------------DLYIGGSSLRQLNLSRNDSE-SLPASITQLSQLRSLHLKDCSMLSSLPE---LPQSLELLDAENCKQ 351 (635)
Q Consensus 289 -------------~l~~~~~~L~~L~Ls~n~~~-~lp~~l~~l~~L~~L~L~~n~~l~~lp~---l~~sL~~L~l~~c~~ 351 (635)
..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++.+.+|. .+++|+.|++++|..
T Consensus 385 L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~ 464 (968)
T PLN00113 385 LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF 464 (968)
T ss_pred EECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCcee
Confidence 12233445555555555543 3444555555555555555555555443 235566666666655
Q ss_pred ccccCccccCccccchhhhhhhhhcc
Q 006695 352 LQFIPEILSGLEEVDASVLEKATFLN 377 (635)
Q Consensus 352 l~~~~~~~~~L~~L~~l~L~~n~~~~ 377 (635)
.+.+|..+ ..++|+.|++++|++..
T Consensus 465 ~~~~p~~~-~~~~L~~L~ls~n~l~~ 489 (968)
T PLN00113 465 FGGLPDSF-GSKRLENLDLSRNQFSG 489 (968)
T ss_pred eeecCccc-ccccceEEECcCCccCC
Confidence 55555443 23556666666666553
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=5.6e-31 Score=271.53 Aligned_cols=336 Identities=18% Similarity=0.151 Sum_probs=162.8
Q ss_pred eecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCce
Q 006695 3 LDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENLV 80 (635)
Q Consensus 3 LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~ 80 (635)
||+|+|++.+++...|.++++|+.+++.+|.++.+| ...... .+|+.|.+.+|.+.++.+. . .++.|+
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP---------~f~~~s-ghl~~L~L~~N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIP---------RFGHES-GHLEKLDLRHNLISSVTSEELSALPALR 152 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccchhhhcc---------cccccc-cceeEEeeeccccccccHHHHHhHhhhh
Confidence 455555555555555555555555555555544222 211111 2245555555544444433 1 344455
Q ss_pred EEEcCCCCCcccccc-CCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCC
Q 006695 81 KLNLPYSKVVQIWEG-KKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCK 158 (635)
Q Consensus 81 ~L~L~~n~l~~l~~~-~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~ 158 (635)
.|||+.|.|.+++.. +..-.++++|+|++|++.+.-. .|.++.+|..|.|++|.....-+.+|.++++|+.|+|..|+
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence 555555555544422 2222445555555554332221 24444455555555543333333344445555555554433
Q ss_pred CCCc-cCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcc-cccCCCccEEEeecccccccchhcccC
Q 006695 159 SLRS-FPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSS-IECLTNLEKLYINRCMRLKRLSTSICK 236 (635)
Q Consensus 159 ~l~~-lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~~~~ 236 (635)
.-.. .-..-++ ++|+.|.|..|.|..+.+. |..+.++++|+|..|++...-..++.+
T Consensus 233 irive~ltFqgL---------------------~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 233 IRIVEGLTFQGL---------------------PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG 291 (873)
T ss_pred eeeehhhhhcCc---------------------hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc
Confidence 1111 0011133 4455555555555555443 555556666666665555555555555
Q ss_pred CCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc-cc
Q 006695 237 LKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS-IT 315 (635)
Q Consensus 237 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~-l~ 315 (635)
+++|+.|+||.|.+...-++.....++|++|+|++|+|+.++.. .+..++.|++|+|++|.+..+.++ +.
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~---------sf~~L~~Le~LnLs~Nsi~~l~e~af~ 362 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG---------SFRVLSQLEELNLSHNSIDHLAEGAFV 362 (873)
T ss_pred cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh---------HHHHHHHhhhhcccccchHHHHhhHHH
Confidence 66666666666555555555555556666666666666655532 122335555555555555555433 45
Q ss_pred CCCCccEEeccCCCCCCcCCC------CCCccceecccccccccccCccccCccccchhhhhhhhhccc
Q 006695 316 QLSQLRSLHLKDCSMLSSLPE------LPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNS 378 (635)
Q Consensus 316 ~l~~L~~L~L~~n~~l~~lp~------l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~ 378 (635)
.+++|++|||++|.+...+-+ .+++|+.|++.||+.-......|.+|+.|+.|+|.+|.+...
T Consensus 363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceee
Confidence 555555555555555443332 245555555555543333333555555555555555555444
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=1e-30 Score=269.58 Aligned_cols=348 Identities=20% Similarity=0.166 Sum_probs=233.8
Q ss_pred eecCCCcccccChhhhcCCCCCc--EEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCC-CCCc
Q 006695 3 LDLSKITSIHLSPQAFANMPNLR--FLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFE-PENL 79 (635)
Q Consensus 3 LdLs~n~~~~l~~~~f~~l~~L~--~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~-l~~L 79 (635)
||.+++++..++-.++.++--.. .|++++|.+..+. +.++..+|+ |+.+.+..|.+..+|.... ..+|
T Consensus 57 ldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id--------~~~f~nl~n-Lq~v~l~~N~Lt~IP~f~~~sghl 127 (873)
T KOG4194|consen 57 LDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHID--------FEFFYNLPN-LQEVNLNKNELTRIPRFGHESGHL 127 (873)
T ss_pred eecCccccccccccccCCcCccceeeeeccccccccCc--------HHHHhcCCc-ceeeeeccchhhhcccccccccce
Confidence 45555555555444444433222 3555555554211 233344444 5555555555555555442 3345
Q ss_pred eEEEcCCCCCcccc-ccCCCCCCCcEEEccCCCCCCC-CCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCC
Q 006695 80 VKLNLPYSKVVQIW-EGKKRAFKLKYVDIHNSQYLIR-MPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGC 157 (635)
Q Consensus 80 ~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~~~~~-~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~ 157 (635)
+.|+|.+|.|.++- +.++.++.|+.||||.|.+... .|.|..-.++++|+|++|.+...-...|..+.+|..|.|+.|
T Consensus 128 ~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN 207 (873)
T KOG4194|consen 128 EKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN 207 (873)
T ss_pred eEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC
Confidence 55555555555442 3345555555555555543321 123444455555555555544444445555555555555553
Q ss_pred CCCCccCCCCCCCCCcEEecCCCCCCCccCc----ccCCcceEEeccccccccC-cccccCCCccEEEeecccccccchh
Q 006695 158 KSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQ----ISGNITDLILSETAIQEVP-SSIECLTNLEKLYINRCMRLKRLST 232 (635)
Q Consensus 158 ~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~----~~~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~L~~n~~~~~lp~ 232 (635)
.++.+|. .++.|+.|+|..|.|..+. ..|.++++|+.|.|..|.+...-..
T Consensus 208 ------------------------rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG 263 (873)
T KOG4194|consen 208 ------------------------RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG 263 (873)
T ss_pred ------------------------cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc
Confidence 3333332 2356778888888888773 4589999999999999999888888
Q ss_pred cccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc
Q 006695 233 SICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA 312 (635)
Q Consensus 233 ~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~ 312 (635)
.|..+.++++|+|..|++...-..++.++++|+.|++++|.|..+...-+ ...++|++|+|++|+++.+++
T Consensus 264 ~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W---------sftqkL~~LdLs~N~i~~l~~ 334 (873)
T KOG4194|consen 264 AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW---------SFTQKLKELDLSSNRITRLDE 334 (873)
T ss_pred ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh---------hhcccceeEeccccccccCCh
Confidence 99999999999999999988777889999999999999999997743222 345899999999999999976
Q ss_pred -cccCCCCccEEeccCCCCCCcCCC----CCCccceeccccccccccc---CccccCccccchhhhhhhhhccc---ccc
Q 006695 313 -SITQLSQLRSLHLKDCSMLSSLPE----LPQSLELLDAENCKQLQFI---PEILSGLEEVDASVLEKATFLNS---AFT 381 (635)
Q Consensus 313 -~l~~l~~L~~L~L~~n~~l~~lp~----l~~sL~~L~l~~c~~l~~~---~~~~~~L~~L~~l~L~~n~~~~~---~~~ 381 (635)
.+..|..|++|+|++|.+ ..+.+ .+++|+.||+++|...-.+ ...|.+|+.|+.|.+.+|++... .|.
T Consensus 335 ~sf~~L~~Le~LnLs~Nsi-~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfs 413 (873)
T KOG4194|consen 335 GSFRVLSQLEELNLSHNSI-DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFS 413 (873)
T ss_pred hHHHHHHHhhhhcccccch-HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhc
Confidence 489999999999999765 44443 4689999999999875444 45788999999999999998766 344
Q ss_pred cCCccceEEEcC
Q 006695 382 LNSACVKFVFSN 393 (635)
Q Consensus 382 l~~~~~~l~~~n 393 (635)
....++.|++.+
T Consensus 414 gl~~LE~LdL~~ 425 (873)
T KOG4194|consen 414 GLEALEHLDLGD 425 (873)
T ss_pred cCcccceecCCC
Confidence 333445665554
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=1.1e-29 Score=263.31 Aligned_cols=339 Identities=22% Similarity=0.314 Sum_probs=216.2
Q ss_pred eecCCCccc-ccChhhhcCCCCCcEEEeecCCCCCCcccceee--------------ecCCcccCCCccceEeecCCCCC
Q 006695 3 LDLSKITSI-HLSPQAFANMPNLRFLKFYMPEHNGVPIMISKV--------------HLDQGLEYLPNELRYLHWHEYPS 67 (635)
Q Consensus 3 LdLs~n~~~-~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~--------------~l~~~l~~l~~~L~~L~l~~~~l 67 (635)
.|+|+|.+. .--|.....|+.++.|.|...++..+|.....+ .+-+.+..+|. ||.+....|.+
T Consensus 12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~-LRsv~~R~N~L 90 (1255)
T KOG0444|consen 12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPR-LRSVIVRDNNL 90 (1255)
T ss_pred ccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchh-hHHHhhhcccc
Confidence 477777765 444666777888888888776666333211111 22233444444 55556665555
Q ss_pred C--CCCCC-CCCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCC--CCCCCCCCEEeecCCCCCcccCcc
Q 006695 68 K--ALPFD-FEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPD--LSETPNLERTNLKNCINLTCVPSS 142 (635)
Q Consensus 68 ~--~lp~~-~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~n~~l~~~~~~ 142 (635)
+ -+|.. |.+..|+.|||++|++++.|.++...+++-+|+||+|++ ..+|. +.+++.|-.|+|++| .+..+|+.
T Consensus 91 KnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~N-rLe~LPPQ 168 (1255)
T KOG0444|consen 91 KNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ 168 (1255)
T ss_pred ccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhccccc-hhhhcCHH
Confidence 3 35554 466777777777777777777766666777777777663 33442 556666667777765 55666666
Q ss_pred ccCCCCCCEEeecCCCCC----CccCCCCCCCCCcEEecCCCC-CCCccCccc---CCcceEEeccccccccCcccccCC
Q 006695 143 VQNFNHLSMLCFEGCKSL----RSFPSNLHFMSPIKIDFSSCF-NLTEFPQIS---GNITDLILSETAIQEVPSSIECLT 214 (635)
Q Consensus 143 i~~l~~L~~L~L~~~~~l----~~lp~~~~l~~L~~L~l~~c~-~l~~~p~~~---~~L~~L~L~~n~i~~lp~~~~~l~ 214 (635)
+..+..|++|.|++|... ..+|+ +++|+.|.+++-+ .+..+|..+ .||..++++.|.+..+|..+..+.
T Consensus 169 ~RRL~~LqtL~Ls~NPL~hfQLrQLPs---mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~ 245 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLNHFQLRQLPS---MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLR 245 (1255)
T ss_pred HHHHhhhhhhhcCCChhhHHHHhcCcc---chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhh
Confidence 777777777777666532 23333 5566666666543 233455333 466677777777777777777777
Q ss_pred CccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcc--ccCchhcccccchhhcc
Q 006695 215 NLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAIT--ELPSSFANLEGLKDLYI 292 (635)
Q Consensus 215 ~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~l~~ 292 (635)
+|+.|+|++|++++ +....+...+|++|++|.|. +..+|..+..++.|+.|.+.+|+++ .||+.|+.
T Consensus 246 ~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK--------- 314 (1255)
T KOG0444|consen 246 NLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK--------- 314 (1255)
T ss_pred hhheeccCcCceee-eeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhh---------
Confidence 77777777766543 33334455667777777754 3456777777777777777777665 56666544
Q ss_pred CCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCC---CCCccceecccccccccccCcccc
Q 006695 293 GGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE---LPQSLELLDAENCKQLQFIPEILS 360 (635)
Q Consensus 293 ~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~---l~~sL~~L~l~~c~~l~~~~~~~~ 360 (635)
+..|+.+..++|.+.-+|.++..+..|+.|.|++|. +-.+|+ +++.|+.||++.|+.+...|.+-.
T Consensus 315 -L~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~d 383 (1255)
T KOG0444|consen 315 -LIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVMPPKPND 383 (1255)
T ss_pred -hhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCccCCCCcch
Confidence 467778888888888888888888888888888654 445665 567888888888888877665443
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=4.2e-29 Score=258.97 Aligned_cols=314 Identities=21% Similarity=0.306 Sum_probs=266.8
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCC-CCCCce
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDF-EPENLV 80 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~ 80 (635)
+|.+++|++.++ ...++.++.||.+.+..|++.. --+|.++..+-. |..|++++|.++..|... ..+++.
T Consensus 59 HLs~~HN~L~~v-hGELs~Lp~LRsv~~R~N~LKn-------sGiP~diF~l~d-Lt~lDLShNqL~EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 59 HLSMAHNQLISV-HGELSDLPRLRSVIVRDNNLKN-------SGIPTDIFRLKD-LTILDLSHNQLREVPTNLEYAKNSI 129 (1255)
T ss_pred hhhhhhhhhHhh-hhhhccchhhHHHhhhcccccc-------CCCCchhccccc-ceeeecchhhhhhcchhhhhhcCcE
Confidence 355667776665 3457777778888887777652 246788888865 999999999999999997 789999
Q ss_pred EEEcCCCCCccccccC-CCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCC
Q 006695 81 KLNLPYSKVVQIWEGK-KRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKS 159 (635)
Q Consensus 81 ~L~L~~n~l~~l~~~~-~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~ 159 (635)
+|+|++|+|+++|..+ .+++-|-.||||+|++-...|.+..+.+|++|.|++|+..-.--..+-.+++|++|.+++.+.
T Consensus 130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred EEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence 9999999999999775 789999999999999777777899999999999999976543333455677888888887543
Q ss_pred -CCccCCCC-CCCCCcEEecCCCCCCCccCccc---CCcceEEeccccccccCcccccCCCccEEEeecccccccchhcc
Q 006695 160 -LRSFPSNL-HFMSPIKIDFSSCFNLTEFPQIS---GNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSI 234 (635)
Q Consensus 160 -l~~lp~~~-~l~~L~~L~l~~c~~l~~~p~~~---~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~ 234 (635)
+..+|.++ .+.+|..++++. +++..+|+.. .+|+.|+|++|.|+++....+...+|++|+|+.|++ ..+|..+
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQL-t~LP~av 287 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQL-TVLPDAV 287 (1255)
T ss_pred hhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchh-ccchHHH
Confidence 45788887 889999999987 5777777654 789999999999999998899999999999999886 5789999
Q ss_pred cCCCCCcEEecCCCCCC-CcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc
Q 006695 235 CKLKSLHVLVLDDCSKL-ERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS 313 (635)
Q Consensus 235 ~~l~~L~~L~Ls~n~~~-~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~ 313 (635)
++++.|+.|.+.+|.+. +-+|..++.+.+|+.+..++|.+.-+|..++. +..|+.|.|+.|++.++|+.
T Consensus 288 cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcR----------C~kL~kL~L~~NrLiTLPea 357 (1255)
T KOG0444|consen 288 CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCR----------CVKLQKLKLDHNRLITLPEA 357 (1255)
T ss_pred hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhh----------hHHHHHhcccccceeechhh
Confidence 99999999999998764 46899999999999999999999999988754 57899999999999999999
Q ss_pred ccCCCCccEEeccCCCCCCcCCC
Q 006695 314 ITQLSQLRSLHLKDCSMLSSLPE 336 (635)
Q Consensus 314 l~~l~~L~~L~L~~n~~l~~lp~ 336 (635)
|.-|+.|+.||+..|+.+..-|.
T Consensus 358 IHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 358 IHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred hhhcCCcceeeccCCcCccCCCC
Confidence 99999999999999999877664
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=8.5e-30 Score=252.61 Aligned_cols=326 Identities=20% Similarity=0.236 Sum_probs=237.5
Q ss_pred eecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceee--------------ecCCcccCCCccceEeecCCCCCC
Q 006695 3 LDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKV--------------HLDQGLEYLPNELRYLHWHEYPSK 68 (635)
Q Consensus 3 LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~--------------~l~~~l~~l~~~L~~L~l~~~~l~ 68 (635)
|++++|.+..+. ..+.++..|.+|++++|.+...|..++.. .+|+.+..++. ++.|+.+.|.++
T Consensus 50 lils~N~l~~l~-~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~-l~~l~~s~n~~~ 127 (565)
T KOG0472|consen 50 LILSHNDLEVLR-EDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLIS-LVKLDCSSNELK 127 (565)
T ss_pred hhhccCchhhcc-HhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhh-hhhhhcccccee
Confidence 567777765554 34677777788888877777555433322 35555555554 788888888888
Q ss_pred CCCCCC-CCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCC
Q 006695 69 ALPFDF-EPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFN 147 (635)
Q Consensus 69 ~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~ 147 (635)
.+|+.+ .+..|..|+..+|++..+|+++..+.+|..+++.+|++....|+.-.++.|++|+...| .++.+|+.++.+.
T Consensus 128 el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~ 206 (565)
T KOG0472|consen 128 ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLE 206 (565)
T ss_pred ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchh
Confidence 888875 67788888888888888888888888888888888886666666555888888888876 7788888999999
Q ss_pred CCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCc----ccCCcceEEeccccccccCcccccCCCccEEEeec
Q 006695 148 HLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQ----ISGNITDLILSETAIQEVPSSIECLTNLEKLYINR 223 (635)
Q Consensus 148 ~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~----~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~ 223 (635)
+|..|++..| .+..+|..-++..|+++.++. +.++.+|. .+..+..|+|..|+++++|..+.-+.+|++||+++
T Consensus 207 ~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSN 284 (565)
T KOG0472|consen 207 SLELLYLRRN-KIRFLPEFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSN 284 (565)
T ss_pred hhHHHHhhhc-ccccCCCCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccC
Confidence 9999999885 467777655788888888776 45565653 34678889999999999999999999999999999
Q ss_pred ccccccchhcccCCCCCcEEecCCCCCCCc-------------------------------------ch-hh---hcCCC
Q 006695 224 CMRLKRLSTSICKLKSLHVLVLDDCSKLER-------------------------------------FP-EI---LEKME 262 (635)
Q Consensus 224 n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~-------------------------------------~~-~~---l~~l~ 262 (635)
|.+. .+|.+++++ .|+.|-+.||.+.+. .+ .. ...+-
T Consensus 285 N~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i 362 (565)
T KOG0472|consen 285 NDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAII 362 (565)
T ss_pred Cccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhh
Confidence 8765 578888999 899999999876210 00 00 01122
Q ss_pred CCCEEEecCCCccccCc--------------------------hhccccc--------------chhhccCCCCccEEEc
Q 006695 263 SVKCISLERTAITELPS--------------------------SFANLEG--------------LKDLYIGGSSLRQLNL 302 (635)
Q Consensus 263 ~L~~L~L~~n~l~~lp~--------------------------~~~~l~~--------------L~~l~~~~~~L~~L~L 302 (635)
+.+.|++++-+++.+|+ .+..+.. .+..+..+++|+.|+|
T Consensus 363 ~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L 442 (565)
T KOG0472|consen 363 TTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDL 442 (565)
T ss_pred hhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeec
Confidence 34455555545554444 3322222 2233445689999999
Q ss_pred CCCCCCcccccccCCCCccEEeccCCCCCCcCCC
Q 006695 303 SRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE 336 (635)
Q Consensus 303 s~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~ 336 (635)
++|.+..+|..++.+..|+.|+++.|+ ...+|+
T Consensus 443 ~NN~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~ 475 (565)
T KOG0472|consen 443 SNNLLNDLPEEMGSLVRLQTLNLSFNR-FRMLPE 475 (565)
T ss_pred ccchhhhcchhhhhhhhhheecccccc-cccchH
Confidence 999999999999999999999999974 445554
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=4.9e-23 Score=247.08 Aligned_cols=291 Identities=29% Similarity=0.487 Sum_probs=226.9
Q ss_pred hhhhcCC-CCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCC-CCCCceEEEcCCCC-Ccc
Q 006695 15 PQAFANM-PNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDF-EPENLVKLNLPYSK-VVQ 91 (635)
Q Consensus 15 ~~~f~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~-l~~ 91 (635)
+..|..+ .+||.|.+.++.+. .+|..+. +.+|+.|++.++.+..+|..+ .+++|+.|+|+++. ++.
T Consensus 581 p~~~~~lp~~Lr~L~~~~~~l~---------~lP~~f~--~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ 649 (1153)
T PLN03210 581 PEGFDYLPPKLRLLRWDKYPLR---------CMPSNFR--PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKE 649 (1153)
T ss_pred CcchhhcCcccEEEEecCCCCC---------CCCCcCC--ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCc
Confidence 4456665 46899998887776 3444442 346888888888888888776 67888888888764 566
Q ss_pred ccccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCC
Q 006695 92 IWEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFM 170 (635)
Q Consensus 92 l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~ 170 (635)
+| .+..+++|+.|+|++|..+..+| .++.+++|+.|++++|..++.+|..+ ++++|+.|++++|..++.+|.. ..
T Consensus 650 ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~ 725 (1153)
T PLN03210 650 IP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--ST 725 (1153)
T ss_pred CC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cC
Confidence 65 36778888888888887777777 47788888888888888888887765 6788888888888777666542 34
Q ss_pred CCcEEecCCCCCCCccCc---------------------------------ccCCcceEEeccc-cccccCcccccCCCc
Q 006695 171 SPIKIDFSSCFNLTEFPQ---------------------------------ISGNITDLILSET-AIQEVPSSIECLTNL 216 (635)
Q Consensus 171 ~L~~L~l~~c~~l~~~p~---------------------------------~~~~L~~L~L~~n-~i~~lp~~~~~l~~L 216 (635)
+|+.|+++++. ++.+|. .+++|+.|++++| .+.++|.+++++++|
T Consensus 726 nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L 804 (1153)
T PLN03210 726 NISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKL 804 (1153)
T ss_pred CcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCC
Confidence 55555555543 233331 1247888999887 466799999999999
Q ss_pred cEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCC
Q 006695 217 EKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSS 296 (635)
Q Consensus 217 ~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~ 296 (635)
+.|++++|..++.+|..+ .+++|+.|++++|..+..+|.. .++|+.|+|++|.|+++|.++. .+++
T Consensus 805 ~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~----------~l~~ 870 (1153)
T PLN03210 805 EHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIE----------KFSN 870 (1153)
T ss_pred CEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHh----------cCCC
Confidence 999999999999998776 7999999999999998887764 4689999999999999998764 4589
Q ss_pred ccEEEcCCCC-CCcccccccCCCCccEEeccCCCCCCcCC
Q 006695 297 LRQLNLSRND-SESLPASITQLSQLRSLHLKDCSMLSSLP 335 (635)
Q Consensus 297 L~~L~Ls~n~-~~~lp~~l~~l~~L~~L~L~~n~~l~~lp 335 (635)
|+.|+|++|+ +..+|..+..+++|+.|++++|..+..++
T Consensus 871 L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 871 LSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 9999999965 88999889999999999999999887654
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=1.8e-26 Score=229.04 Aligned_cols=323 Identities=22% Similarity=0.296 Sum_probs=247.2
Q ss_pred eecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceEE
Q 006695 3 LDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKL 82 (635)
Q Consensus 3 LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L 82 (635)
||+.+|++..++++.+. |+.|+.|+...|.++ .+|+.+..+.. |..|++.+|.+..+|+.-+...|++|
T Consensus 165 l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~---------tlP~~lg~l~~-L~~LyL~~Nki~~lPef~gcs~L~El 233 (565)
T KOG0472|consen 165 LDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE---------TLPPELGGLES-LELLYLRRNKIRFLPEFPGCSLLKEL 233 (565)
T ss_pred hhccccchhhCCHHHHH-HHHHHhcccchhhhh---------cCChhhcchhh-hHHHHhhhcccccCCCCCccHHHHHH
Confidence 67788888888877777 888999988888777 56677777654 88899999999999943478899999
Q ss_pred EcCCCCCccccccC-CCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCC
Q 006695 83 NLPYSKVVQIWEGK-KRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSL 160 (635)
Q Consensus 83 ~L~~n~l~~l~~~~-~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l 160 (635)
++..|.|+.+|+.. +++.+|.+|||.+|+ ++..| ++..+.+|++||+++| ....+|.+++++ .|+.|-+.||..-
T Consensus 234 h~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 234 HVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred HhcccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCchH
Confidence 99999999998776 589999999999998 55666 4888899999999987 567788899999 9999999887421
Q ss_pred Cc------------------------------------------cCCCCCCCCCcEEecCCCCCCCccCccc------CC
Q 006695 161 RS------------------------------------------FPSNLHFMSPIKIDFSSCFNLTEFPQIS------GN 192 (635)
Q Consensus 161 ~~------------------------------------------lp~~~~l~~L~~L~l~~c~~l~~~p~~~------~~ 192 (635)
+. +|..-...+.+.|++++ ..++.+|... .-
T Consensus 311 TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~ 389 (565)
T KOG0472|consen 311 TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEI 389 (565)
T ss_pred HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcc
Confidence 10 00000233456666666 4556666321 23
Q ss_pred cceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCC
Q 006695 193 ITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERT 272 (635)
Q Consensus 193 L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n 272 (635)
++..++++|.+.++|..+..+..+++.-+..++..+-.|..++.+++|..|+|++ +.+..+|..++.+..|+.|+++.|
T Consensus 390 Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 390 VTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFN 468 (565)
T ss_pred eEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheeccccc
Confidence 6788999999999998888777777666666667778888889999999999998 567788999999999999999999
Q ss_pred CccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc-ccCCCCccEEeccCCCCCCcCCCC---CCccceecccc
Q 006695 273 AITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSMLSSLPEL---PQSLELLDAEN 348 (635)
Q Consensus 273 ~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~l~~lp~l---~~sL~~L~l~~ 348 (635)
++..+|..+..+ ..|+.+-.++|++++++.. ++++.+|.+|||.+|. ++.+|+. ..+|++|+++|
T Consensus 469 rFr~lP~~~y~l----------q~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~g 537 (565)
T KOG0472|consen 469 RFRMLPECLYEL----------QTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND-LQQIPPILGNMTNLRHLELDG 537 (565)
T ss_pred ccccchHHHhhH----------HHHHHHHhccccccccChHHhhhhhhcceeccCCCc-hhhCChhhccccceeEEEecC
Confidence 999998765333 4455556666778877655 7888888888888654 4445542 46788888888
Q ss_pred cccc
Q 006695 349 CKQL 352 (635)
Q Consensus 349 c~~l 352 (635)
|++-
T Consensus 538 Npfr 541 (565)
T KOG0472|consen 538 NPFR 541 (565)
T ss_pred CccC
Confidence 8764
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=5e-26 Score=246.86 Aligned_cols=378 Identities=20% Similarity=0.215 Sum_probs=272.8
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCC-CCCCce
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDF-EPENLV 80 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~ 80 (635)
.|++..|-....+-+...+.-+|+.|++++|++. .+|..+..++. |+.|.++.|.++++|... .+.+|+
T Consensus 25 ~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~---------~fp~~it~l~~-L~~ln~s~n~i~~vp~s~~~~~~l~ 94 (1081)
T KOG0618|consen 25 ILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS---------SFPIQITLLSH-LRQLNLSRNYIRSVPSSCSNMRNLQ 94 (1081)
T ss_pred hhhccccccccCchHHhhheeeeEEeeccccccc---------cCCchhhhHHH-HhhcccchhhHhhCchhhhhhhcch
Confidence 4667777766666677777777999999999887 56677777765 999999999999999775 789999
Q ss_pred EEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCC-------------------CCEEeecCCCCCcccCc
Q 006695 81 KLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPN-------------------LERTNLKNCINLTCVPS 141 (635)
Q Consensus 81 ~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~-------------------L~~L~L~~n~~l~~~~~ 141 (635)
+|.|.+|.+..+|.++..+++|++||+++|.+....+-+..+.. ++.+++..|...+.++.
T Consensus 95 ~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~ 174 (1081)
T KOG0618|consen 95 YLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLI 174 (1081)
T ss_pred hheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhc
Confidence 99999999999999999999999999999987654333333333 44555555555555555
Q ss_pred cccCCCCCCEEeecCCCCC----------CccCC--------CCCCCCCcEEecCCCCCCCccCc-ccCCcceEEecccc
Q 006695 142 SVQNFNHLSMLCFEGCKSL----------RSFPS--------NLHFMSPIKIDFSSCFNLTEFPQ-ISGNITDLILSETA 202 (635)
Q Consensus 142 ~i~~l~~L~~L~L~~~~~l----------~~lp~--------~~~l~~L~~L~l~~c~~l~~~p~-~~~~L~~L~L~~n~ 202 (635)
.+..++. .|+|++|... +.+-- .+..++|+.|..+.|...+..+. .+.+|++++++.|+
T Consensus 175 ~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~ 252 (1081)
T KOG0618|consen 175 DIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNN 252 (1081)
T ss_pred chhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhh
Confidence 5665555 5777666543 11100 00345566666667665544443 33689999999999
Q ss_pred ccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhc
Q 006695 203 IQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFA 282 (635)
Q Consensus 203 i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~ 282 (635)
++.+|+|++.+.+|+.|+..+|.+ ..+|..+....+|+.|.+..|. +..+|...+.+++|++|+|..|+|..+|+.+-
T Consensus 253 l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l 330 (1081)
T KOG0618|consen 253 LSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFL 330 (1081)
T ss_pred hhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccccccchHHH
Confidence 999999999999999999999987 6778788888888888888865 44566677778888888888888888876432
Q ss_pred cccc--------------------------ch--------------hhccCCCCccEEEcCCCCCCccccc-ccCCCCcc
Q 006695 283 NLEG--------------------------LK--------------DLYIGGSSLRQLNLSRNDSESLPAS-ITQLSQLR 321 (635)
Q Consensus 283 ~l~~--------------------------L~--------------~l~~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~ 321 (635)
.... |. ..+.+..+|+.|+|++|++.++|+. +.++..|+
T Consensus 331 ~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~Le 410 (1081)
T KOG0618|consen 331 AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELE 410 (1081)
T ss_pred hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhH
Confidence 1111 11 1223458899999999999999975 68999999
Q ss_pred EEeccCCCCCCcCCC---CCCccceecccccccccccCccccCccccchhhhhhhhhccc--ccccC-CccceEEEcCCc
Q 006695 322 SLHLKDCSMLSSLPE---LPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNS--AFTLN-SACVKFVFSNCL 395 (635)
Q Consensus 322 ~L~L~~n~~l~~lp~---l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~--~~~l~-~~~~~l~~~nC~ 395 (635)
+|+|++|+ ++.+|. ..+.|++|.+++|. +...| .+..++.|+.+|++.|.+... .+..+ ..+++|+++.-.
T Consensus 411 eL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~-l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 411 ELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQ-LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HHhcccch-hhhhhHHHHhhhhhHHHhhcCCc-eeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 99999964 555665 24677777777764 34455 677777777888777777665 23333 334666666655
Q ss_pred c
Q 006695 396 K 396 (635)
Q Consensus 396 ~ 396 (635)
+
T Consensus 488 ~ 488 (1081)
T KOG0618|consen 488 R 488 (1081)
T ss_pred c
Confidence 4
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=4.4e-21 Score=215.02 Aligned_cols=241 Identities=20% Similarity=0.231 Sum_probs=156.8
Q ss_pred cceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCC
Q 006695 56 ELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCIN 135 (635)
Q Consensus 56 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~ 135 (635)
+|+.|.+.+|.++.+|.. +++|++|++++|+|+.+|.. .++|+.|++++|.+ ..+|.+ ..+|+.|++++|.
T Consensus 223 ~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L-~~Lp~l--p~~L~~L~Ls~N~- 293 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL-THLPAL--PSGLCKLWIFGNQ- 293 (788)
T ss_pred CCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccCCch-hhhhhc--hhhcCEEECcCCc-
Confidence 355555655655555542 35566666666666655532 24555666666553 233321 2455566666653
Q ss_pred CcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCC
Q 006695 136 LTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTN 215 (635)
Q Consensus 136 l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~ 215 (635)
+..+|. .+++|+.|++++|+ +..+|.. ..+|+.|.+++| .++.+|..+.+|+.|+|++|.|+.+|.. ..+
T Consensus 294 Lt~LP~---~p~~L~~LdLS~N~-L~~Lp~l--p~~L~~L~Ls~N-~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~ 363 (788)
T PRK15387 294 LTSLPV---LPPGLQELSVSDNQ-LASLPAL--PSELCKLWAYNN-QLTSLPTLPSGLQELSVSDNQLASLPTL---PSE 363 (788)
T ss_pred cccccc---cccccceeECCCCc-cccCCCC--cccccccccccC-ccccccccccccceEecCCCccCCCCCC---Ccc
Confidence 333443 23456666666543 3334431 234556666653 4556666667788888888888888764 356
Q ss_pred ccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCC
Q 006695 216 LEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGS 295 (635)
Q Consensus 216 L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~ 295 (635)
|+.|++++|.+.. +|.. ..+|+.|++++|.+.+ +|.. .++|+.|++++|.++.+|... .
T Consensus 364 L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssIP~l~-------------~ 422 (788)
T PRK15387 364 LYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSLPMLP-------------S 422 (788)
T ss_pred cceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCCCcch-------------h
Confidence 7778888877653 5543 3578889998887654 5543 367999999999999888532 4
Q ss_pred CccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCC
Q 006695 296 SLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE 336 (635)
Q Consensus 296 ~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~ 336 (635)
+|+.|++++|+++.+|..+.++++|+.|+|++|++.+..+.
T Consensus 423 ~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 423 GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHH
Confidence 67889999999999999999999999999999998876654
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=7.8e-23 Score=222.28 Aligned_cols=323 Identities=23% Similarity=0.287 Sum_probs=232.8
Q ss_pred eecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceEE
Q 006695 3 LDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKL 82 (635)
Q Consensus 3 LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L 82 (635)
|||++|++. .-....+.+|+.|....|++.. +..--.+|+.|..++|++..+-..+.+.+|+.+
T Consensus 183 ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~-------------l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~ 246 (1081)
T KOG0618|consen 183 LDLRYNEME---VLDLSNLANLEVLHCERNQLSE-------------LEISGPSLTALYADHNPLTTLDVHPVPLNLQYL 246 (1081)
T ss_pred eecccchhh---hhhhhhccchhhhhhhhcccce-------------EEecCcchheeeeccCcceeeccccccccceee
Confidence 566666544 2334555666666666665541 111122488888889988877667788999999
Q ss_pred EcCCCCCccccccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCC
Q 006695 83 NLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLR 161 (635)
Q Consensus 83 ~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~ 161 (635)
++++|+++.+|+.+..+.+|+.|++.+|.+ ..+| .+....+|+.|.+..| .+..+|.....++.|++|+|..|+ +.
T Consensus 247 dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~-L~ 323 (1081)
T KOG0618|consen 247 DISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNN-LP 323 (1081)
T ss_pred ecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhcc-cc
Confidence 999999999998899999999999999986 5555 5888889999998887 567777788888888999887753 44
Q ss_pred ccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcc-cccCCCccEEEeecccccccchhcccCCCCC
Q 006695 162 SFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSS-IECLTNLEKLYINRCMRLKRLSTSICKLKSL 240 (635)
Q Consensus 162 ~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L 240 (635)
.+|..+ +.. ....+..|..+.|.+..+|.. =..++.|+.|.+.+|.+....-..+.+.++|
T Consensus 324 ~lp~~~----l~v--------------~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hL 385 (1081)
T KOG0618|consen 324 SLPDNF----LAV--------------LNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHL 385 (1081)
T ss_pred ccchHH----Hhh--------------hhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccce
Confidence 555421 000 001245555566666666633 2346678888888888887766678888899
Q ss_pred cEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCc
Q 006695 241 HVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQL 320 (635)
Q Consensus 241 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L 320 (635)
+.|+|++|.+.......+.+++.|++|+|+||+++.+|..+.+ +..|++|...+|++..+| .+..++.|
T Consensus 386 KVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~----------~~~L~tL~ahsN~l~~fP-e~~~l~qL 454 (1081)
T KOG0618|consen 386 KVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVAN----------LGRLHTLRAHSNQLLSFP-ELAQLPQL 454 (1081)
T ss_pred eeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHh----------hhhhHHHhhcCCceeech-hhhhcCcc
Confidence 9999998765544445678888999999999999998877644 477888888889988888 78889999
Q ss_pred cEEeccCCCCCC-cCCC-CC-CccceecccccccccccCccccCccccchhhhhhh
Q 006695 321 RSLHLKDCSMLS-SLPE-LP-QSLELLDAENCKQLQFIPEILSGLEEVDASVLEKA 373 (635)
Q Consensus 321 ~~L~L~~n~~l~-~lp~-l~-~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n 373 (635)
+.+|++.|++.. .+|+ .| +.|++||++||..+..--..+..+..+...++.-+
T Consensus 455 ~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 455 KVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred eEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 999999877654 3444 45 78999999999865544445555555555555544
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=3.3e-20 Score=208.00 Aligned_cols=257 Identities=23% Similarity=0.278 Sum_probs=134.4
Q ss_pred cceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCC
Q 006695 56 ELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCIN 135 (635)
Q Consensus 56 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~ 135 (635)
+-..|+++++.++++|..+. .+|+.|++.+|+++.+|.. +++|++|+|++|++. .+|.+ .++|+.|++++|.
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N~- 273 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSNP- 273 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-cccCc--ccccceeeccCCc-
Confidence 45567777777777776553 3677777777777777643 466777777777644 34432 3566777777663
Q ss_pred CcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCC
Q 006695 136 LTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTN 215 (635)
Q Consensus 136 l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~ 215 (635)
+..+|.. ..+|+.|++++|+ ++.+|. ..++|+.|++++| .++.+|..+.+|+.|++++|.++.+|..
T Consensus 274 L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~--~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l------ 340 (788)
T PRK15387 274 LTHLPAL---PSGLCKLWIFGNQ-LTSLPV--LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPTL------ 340 (788)
T ss_pred hhhhhhc---hhhcCEEECcCCc-cccccc--cccccceeECCCC-ccccCCCCcccccccccccCcccccccc------
Confidence 3344432 2445566666543 334443 1234555555443 3334444444444444444444444421
Q ss_pred ccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCC
Q 006695 216 LEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGS 295 (635)
Q Consensus 216 L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~ 295 (635)
..+|+.|+|++|.+.+ +|.. ..+|+.|++++|.|+.+|.. ..
T Consensus 341 ---------------------p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~l-------------~~ 382 (788)
T PRK15387 341 ---------------------PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPAL-------------PS 382 (788)
T ss_pred ---------------------ccccceEecCCCccCC-CCCC---CcccceehhhccccccCccc-------------cc
Confidence 1245555555544332 2321 23445555555555555431 13
Q ss_pred CccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCCCCCccceecccccccccccCccccCccccchhhhhhhhh
Q 006695 296 SLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATF 375 (635)
Q Consensus 296 ~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~ 375 (635)
+|+.|++++|+++.+|.. .++|+.|++++|++ ..+|..+.+|+.|++++|. ++.+|..+..+++|..++|++|++
T Consensus 383 ~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~L-ssIP~l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 383 GLKELIVSGNRLTSLPVL---PSELKELMVSGNRL-TSLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred ccceEEecCCcccCCCCc---ccCCCEEEccCCcC-CCCCcchhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCCC
Confidence 455555555555555532 23455556655543 3355555555556665554 334555555555555555555554
Q ss_pred c
Q 006695 376 L 376 (635)
Q Consensus 376 ~ 376 (635)
.
T Consensus 458 s 458 (788)
T PRK15387 458 S 458 (788)
T ss_pred C
Confidence 3
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=6.5e-19 Score=198.85 Aligned_cols=245 Identities=20% Similarity=0.270 Sum_probs=167.9
Q ss_pred ccceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCC
Q 006695 55 NELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNC 133 (635)
Q Consensus 55 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n 133 (635)
++...|+++++.++++|..+ +++|+.|++++|+++.+|..+. .+|+.|++++|.+. .+|. + .++|+.|+|++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhh--hccccEEECcCC
Confidence 35677888888888877654 3578888888888888776654 47888888887744 4553 3 246888888887
Q ss_pred CCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcc-cCCcceEEeccccccccCccccc
Q 006695 134 INLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQI-SGNITDLILSETAIQEVPSSIEC 212 (635)
Q Consensus 134 ~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~-~~~L~~L~L~~n~i~~lp~~~~~ 212 (635)
.. ..+|..+. ++|+.|++++| .+..+|..+. .+|+.|++++| .++.+|.. ..+|+.|++++|.++.+|..+.
T Consensus 252 ~L-~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~-~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~- 324 (754)
T PRK15370 252 RI-TELPERLP--SALQSLDLFHN-KISCLPENLP-EELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLP- 324 (754)
T ss_pred cc-CcCChhHh--CCCCEEECcCC-ccCccccccC-CCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCcccc-
Confidence 43 46666553 47888888765 4556666442 47777887775 45556643 3467888888888888776543
Q ss_pred CCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhcc
Q 006695 213 LTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYI 292 (635)
Q Consensus 213 l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~ 292 (635)
++|+.|++++|.+.+ +|..+. ++|+.|++++|++. .+|..+. ++|+.|++++|.++.+|..+.
T Consensus 325 -~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~---------- 387 (754)
T PRK15370 325 -PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLPENLP---------- 387 (754)
T ss_pred -ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCCCHhHH----------
Confidence 578888888877654 555443 67888888887654 4555442 578888888888888776541
Q ss_pred CCCCccEEEcCCCCCCcccccc----cCCCCccEEeccCCCCC
Q 006695 293 GGSSLRQLNLSRNDSESLPASI----TQLSQLRSLHLKDCSML 331 (635)
Q Consensus 293 ~~~~L~~L~Ls~n~~~~lp~~l----~~l~~L~~L~L~~n~~l 331 (635)
.+|+.|++++|++..+|..+ ..++++..|+|.+|++.
T Consensus 388 --~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 --AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred --HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 35777888888887777654 34577778888887764
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=6.3e-18 Score=190.93 Aligned_cols=249 Identities=17% Similarity=0.301 Sum_probs=193.1
Q ss_pred CCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCCCCC
Q 006695 22 PNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFK 101 (635)
Q Consensus 22 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~ 101 (635)
.+...|+++++.++.+ |.. +|..|+.|++++|.++.+|..+. .+|++|++++|+++.+|..+. .+
T Consensus 178 ~~~~~L~L~~~~LtsL---------P~~---Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~ 242 (754)
T PRK15370 178 NNKTELRLKILGLTTI---------PAC---IPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DT 242 (754)
T ss_pred cCceEEEeCCCCcCcC---------Ccc---cccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--cc
Confidence 4578899988877733 333 24469999999999999998753 589999999999999887654 47
Q ss_pred CcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCC
Q 006695 102 LKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSC 180 (635)
Q Consensus 102 L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c 180 (635)
|+.|+|++|.+. .+|. +. .+|+.|++++|. +..+|..+. ++|+.|++++|+ ++.+|..+. .+|+.|++++|
T Consensus 243 L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp-~sL~~L~Ls~N 314 (754)
T PRK15370 243 IQEMELSINRIT-ELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHLP-SGITHLNVQSN 314 (754)
T ss_pred ccEEECcCCccC-cCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCc-cccCcccch-hhHHHHHhcCC
Confidence 999999999865 5563 32 589999999874 446777654 589999998874 556765442 57888999885
Q ss_pred CCCCccCc-ccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhc
Q 006695 181 FNLTEFPQ-ISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILE 259 (635)
Q Consensus 181 ~~l~~~p~-~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~ 259 (635)
.++.+|. .+.+|+.|++++|.++.+|..+. ++|+.|++++|++. .+|..+ .++|+.|+|++|.+. .+|..+.
T Consensus 315 -~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~ 387 (754)
T PRK15370 315 -SLTALPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP 387 (754)
T ss_pred -ccccCCccccccceeccccCCccccCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH
Confidence 4556664 45789999999999999998764 79999999999875 466655 368999999999876 4566554
Q ss_pred CCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCC
Q 006695 260 KMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSE 308 (635)
Q Consensus 260 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~ 308 (635)
.+|+.|++++|+++.+|..+.. +...++.+..|++.+|.+.
T Consensus 388 --~sL~~LdLs~N~L~~LP~sl~~------~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 --AALQIMQASRNNLVRLPESLPH------FRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred --HHHHHHhhccCCcccCchhHHH------HhhcCCCccEEEeeCCCcc
Confidence 3799999999999999976533 3455688999999999976
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.70 E-value=8.3e-20 Score=181.81 Aligned_cols=364 Identities=16% Similarity=0.127 Sum_probs=241.8
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCc
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENL 79 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L 79 (635)
.++|..|.|..|++.+|+.+++||.|+|++|.|+.| -|..++.++.-++.+...+|.++++|.. | ++..|
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I--------~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI--------APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL 142 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchhhc--------ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence 478899999999999999999999999999999833 3667777766444455555999999988 6 78999
Q ss_pred eEEEcCCCCCcccc-ccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCC------------cccCccccC
Q 006695 80 VKLNLPYSKVVQIW-EGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINL------------TCVPSSVQN 145 (635)
Q Consensus 80 ~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l------------~~~~~~i~~ 145 (635)
+.|.+.-|++.-++ +.+..+++|..|.+.+|.+..... .|..+.+++.+.+..|... ...|..++.
T Consensus 143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 99999999998665 457889999999999998554333 4888889999988887522 122223333
Q ss_pred CCCCCEEeecCCCCCCccCCCCCCCCCcEE---ecCCCCCCCccC----cccCCcceEEeccccccccC-cccccCCCcc
Q 006695 146 FNHLSMLCFEGCKSLRSFPSNLHFMSPIKI---DFSSCFNLTEFP----QISGNITDLILSETAIQEVP-SSIECLTNLE 217 (635)
Q Consensus 146 l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L---~l~~c~~l~~~p----~~~~~L~~L~L~~n~i~~lp-~~~~~l~~L~ 217 (635)
........+.+. .+..++..-..-+++.+ -.+.|......| ..+++|++|+|++|+|+.|. .+|.++..++
T Consensus 223 arc~~p~rl~~~-Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~ 301 (498)
T KOG4237|consen 223 ARCVSPYRLYYK-RINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ 301 (498)
T ss_pred ceecchHHHHHH-HhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence 333333333221 12222211111111111 122232222233 23478999999999999985 5599999999
Q ss_pred EEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcc------ccCchhcccccchhhc
Q 006695 218 KLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAIT------ELPSSFANLEGLKDLY 291 (635)
Q Consensus 218 ~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~------~lp~~~~~l~~L~~l~ 291 (635)
.|.|..|++...-...|.++..|++|+|++|+++...|..|..+.+|.+|++-.|.+. -+-+|+..-.....--
T Consensus 302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~ 381 (498)
T KOG4237|consen 302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPR 381 (498)
T ss_pred hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCC
Confidence 9999999988777788899999999999999999999999999999999999887654 1112221111000000
Q ss_pred -cCCCCccEEEcCCCCCCcc----ccc---------ccCCCCccEEeccCCCCCCcCCC-CCCccceecccccccccccC
Q 006695 292 -IGGSSLRQLNLSRNDSESL----PAS---------ITQLSQLRSLHLKDCSMLSSLPE-LPQSLELLDAENCKQLQFIP 356 (635)
Q Consensus 292 -~~~~~L~~L~Ls~n~~~~l----p~~---------l~~l~~L~~L~L~~n~~l~~lp~-l~~sL~~L~l~~c~~l~~~~ 356 (635)
.+-..++.+.++...+... |+. =..++-+.+..=..|+.++.+|. .|..-.+|++.+|.. +.+|
T Consensus 382 Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~-~~vp 460 (498)
T KOG4237|consen 382 CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAI-TSVP 460 (498)
T ss_pred CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchh-cccC
Confidence 0113455666666553322 111 12344455544445677778876 456777888888864 4455
Q ss_pred ccccCccccchhhhhhhhhccc
Q 006695 357 EILSGLEEVDASVLEKATFLNS 378 (635)
Q Consensus 357 ~~~~~L~~L~~l~L~~n~~~~~ 378 (635)
.. .+.+| .+++++|++...
T Consensus 461 ~~--~~~~l-~~dls~n~i~~L 479 (498)
T KOG4237|consen 461 DE--LLRSL-LLDLSNNRISSL 479 (498)
T ss_pred HH--HHhhh-hcccccCceehh
Confidence 54 55667 788888877544
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.59 E-value=2.2e-17 Score=164.67 Aligned_cols=269 Identities=17% Similarity=0.184 Sum_probs=171.1
Q ss_pred CCCccceEeecCCCCCCCCCCC-C-CCCCceEEEcCCCCCccc-cccCCCCCCCcEEEccCCCCCCCCC--CCCCCCCCC
Q 006695 52 YLPNELRYLHWHEYPSKALPFD-F-EPENLVKLNLPYSKVVQI-WEGKKRAFKLKYVDIHNSQYLIRMP--DLSETPNLE 126 (635)
Q Consensus 52 ~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~ 126 (635)
.+|.+...++++.|.+++||+. | .+++|+.|||++|+|+.| |+.++.+++|..|-+.+|..++.+| .|+++..|+
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 3566788899999999999987 6 789999999999999987 6778999998888888755567777 399999999
Q ss_pred EEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCC-CC-CCCCCcEEecCCCCCCCc------------cCcccC-
Q 006695 127 RTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPS-NL-HFMSPIKIDFSSCFNLTE------------FPQISG- 191 (635)
Q Consensus 127 ~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~-~~-~l~~L~~L~l~~c~~l~~------------~p~~~~- 191 (635)
.|.+.-|.........+..+++|..|.+.+|. +..++. .+ .+.+++.+.+..+..+-. .|...+
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 99998887777777788999999999998854 444444 22 666777776655432111 110000
Q ss_pred --CcceEEeccccccccCcc-c-ccCCCccEEEeecccccccch-hcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCE
Q 006695 192 --NITDLILSETAIQEVPSS-I-ECLTNLEKLYINRCMRLKRLS-TSICKLKSLHVLVLDDCSKLERFPEILEKMESVKC 266 (635)
Q Consensus 192 --~L~~L~L~~n~i~~lp~~-~-~~l~~L~~L~L~~n~~~~~lp-~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~ 266 (635)
-.....+.+.++..+++. + ..+..+..=-.+.|......| ..|..+++|+.|+|++|.+...-+.+|.+...+++
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE 302 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence 111112223333333221 1 111111111112232223323 23566777777777777766666667777777777
Q ss_pred EEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcc-cccccCCCCccEEeccCCCC
Q 006695 267 ISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESL-PASITQLSQLRSLHLKDCSM 330 (635)
Q Consensus 267 L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~l-p~~l~~l~~L~~L~L~~n~~ 330 (635)
|.|..|+|..+... .+.++..|+.|+|.+|+++.+ |..|..+.+|.+|+|-.|+.
T Consensus 303 L~L~~N~l~~v~~~---------~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSG---------MFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhcCcchHHHHHHH---------hhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 77777776655432 244556677777777776655 34466666777776666554
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=3.9e-17 Score=145.33 Aligned_cols=170 Identities=22% Similarity=0.324 Sum_probs=101.3
Q ss_pred CCCCCCCCCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCC
Q 006695 68 KALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFN 147 (635)
Q Consensus 68 ~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~ 147 (635)
..+|..|++.+.+.|.|++|+++.+|..+..+.+|+.|++.+|++....+.++.+++|+.|++.-| .+..+|..|+.++
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p 102 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFP 102 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCc
Confidence 455666777777778888888887777777777777777777764443335666666666666544 3444455555555
Q ss_pred CCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeeccccc
Q 006695 148 HLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRL 227 (635)
Q Consensus 148 ~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~ 227 (635)
.|+.|++.. |++.
T Consensus 103 ~levldlty-------------------------------------------------------------------nnl~ 115 (264)
T KOG0617|consen 103 ALEVLDLTY-------------------------------------------------------------------NNLN 115 (264)
T ss_pred hhhhhhccc-------------------------------------------------------------------cccc
Confidence 555555544 3332
Q ss_pred c-cchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCC
Q 006695 228 K-RLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRND 306 (635)
Q Consensus 228 ~-~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~ 306 (635)
+ .+|..|..+..|+.|+|++|. .+.+|...+++++|+.|.+.+|.+-++|..++.+ +.|++|.+.+|+
T Consensus 116 e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~l----------t~lrelhiqgnr 184 (264)
T KOG0617|consen 116 ENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDL----------TRLRELHIQGNR 184 (264)
T ss_pred cccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHH----------HHHHHHhcccce
Confidence 2 344444455555555555533 3445555566666666666666666666655433 556666666666
Q ss_pred CCcccccccC
Q 006695 307 SESLPASITQ 316 (635)
Q Consensus 307 ~~~lp~~l~~ 316 (635)
++.+|..+++
T Consensus 185 l~vlppel~~ 194 (264)
T KOG0617|consen 185 LTVLPPELAN 194 (264)
T ss_pred eeecChhhhh
Confidence 6666655444
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.54 E-value=8.8e-16 Score=159.85 Aligned_cols=235 Identities=16% Similarity=0.131 Sum_probs=105.6
Q ss_pred CCCceEEEcCCCCCc-----cccccCCCCCCCcEEEccCCCCCCC------CC-CCCCCCCCCEEeecCCCCCcccCccc
Q 006695 76 PENLVKLNLPYSKVV-----QIWEGKKRAFKLKYVDIHNSQYLIR------MP-DLSETPNLERTNLKNCINLTCVPSSV 143 (635)
Q Consensus 76 l~~L~~L~L~~n~l~-----~l~~~~~~l~~L~~L~Ls~n~~~~~------~p-~l~~l~~L~~L~L~~n~~l~~~~~~i 143 (635)
+.+|++|+++++.++ .++..+...++|+.|+++++.+... ++ .+..+++|+.|++++|......+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 455777777777663 3444555666677777766654310 00 13345555555555554433333333
Q ss_pred cCCCC---CCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCC-CccCcccCCcceEEecccccc-----ccCcccccCC
Q 006695 144 QNFNH---LSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNL-TEFPQISGNITDLILSETAIQ-----EVPSSIECLT 214 (635)
Q Consensus 144 ~~l~~---L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l-~~~p~~~~~L~~L~L~~n~i~-----~lp~~~~~l~ 214 (635)
..+.+ |+.|++++|+....-. ..+ ..++...++|+.|++++|.++ .++..+..++
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~----------------~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 165 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGL----------------RLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANR 165 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHH----------------HHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCC
Confidence 22222 4444444433110000 000 001111145666666666555 2233344555
Q ss_pred CccEEEeecccccc----cchhcccCCCCCcEEecCCCCCCCc----chhhhcCCCCCCEEEecCCCccccC-chhcccc
Q 006695 215 NLEKLYINRCMRLK----RLSTSICKLKSLHVLVLDDCSKLER----FPEILEKMESVKCISLERTAITELP-SSFANLE 285 (635)
Q Consensus 215 ~L~~L~L~~n~~~~----~lp~~~~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~ 285 (635)
+|++|++++|.+.+ .++..+..+++|+.|++++|.+.+. +...+..+++|+.|++++|.++... ..+..
T Consensus 166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~-- 243 (319)
T cd00116 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALAS-- 243 (319)
T ss_pred CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHH--
Confidence 56666666655542 1223334445566666666554322 2233444555666666555554310 00000
Q ss_pred cchhhccCCCCccEEEcCCCCCC-----cccccccCCCCccEEeccCCCCC
Q 006695 286 GLKDLYIGGSSLRQLNLSRNDSE-----SLPASITQLSQLRSLHLKDCSML 331 (635)
Q Consensus 286 ~L~~l~~~~~~L~~L~Ls~n~~~-----~lp~~l~~l~~L~~L~L~~n~~l 331 (635)
......+.|++|++++|.++ .+...+..+++|+++++++|++.
T Consensus 244 ---~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 244 ---ALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred ---HHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 00011245555555555543 22233344455555555555444
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.53 E-value=8.1e-16 Score=160.15 Aligned_cols=270 Identities=18% Similarity=0.145 Sum_probs=133.6
Q ss_pred EEcCCCCCc--cccccCCCCCCCcEEEccCCCCCCC----CC-CCCCCCCCCEEeecCCCCC------cccCccccCCCC
Q 006695 82 LNLPYSKVV--QIWEGKKRAFKLKYVDIHNSQYLIR----MP-DLSETPNLERTNLKNCINL------TCVPSSVQNFNH 148 (635)
Q Consensus 82 L~L~~n~l~--~l~~~~~~l~~L~~L~Ls~n~~~~~----~p-~l~~l~~L~~L~L~~n~~l------~~~~~~i~~l~~ 148 (635)
|+|..+.++ .....+..+.+|+.|+++++.+... ++ .+...++|++|+++++... ..++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 444444443 1222234455577777777664321 22 2445566777777665433 122334555667
Q ss_pred CCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccc-----cCcccccC-CCccEEEee
Q 006695 149 LSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQE-----VPSSIECL-TNLEKLYIN 222 (635)
Q Consensus 149 L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~-----lp~~~~~l-~~L~~L~L~ 222 (635)
|+.|++++|......+..+ ..+... ++|++|++++|.++. +...+..+ ++|+.|+++
T Consensus 83 L~~L~l~~~~~~~~~~~~~----------------~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~ 145 (319)
T cd00116 83 LQELDLSDNALGPDGCGVL----------------ESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG 145 (319)
T ss_pred eeEEEccCCCCChhHHHHH----------------HHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcC
Confidence 7777776655432211111 011111 234555555554441 22334445 667777777
Q ss_pred cccccc----cchhcccCCCCCcEEecCCCCCCC----cchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCC
Q 006695 223 RCMRLK----RLSTSICKLKSLHVLVLDDCSKLE----RFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGG 294 (635)
Q Consensus 223 ~n~~~~----~lp~~~~~l~~L~~L~Ls~n~~~~----~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~ 294 (635)
+|.+.+ .++..+..+++|++|++++|.+.+ .++..+..+++|+.|++++|.++.... ..+...+..+
T Consensus 146 ~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-----~~l~~~~~~~ 220 (319)
T cd00116 146 RNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA-----SALAETLASL 220 (319)
T ss_pred CCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH-----HHHHHHhccc
Confidence 776652 233345556667777777766553 223344455677777777776653211 0111223345
Q ss_pred CCccEEEcCCCCCCccc-ccc-----cCCCCccEEeccCCCCCC--------cCCCCCCccceecccccccccc----cC
Q 006695 295 SSLRQLNLSRNDSESLP-ASI-----TQLSQLRSLHLKDCSMLS--------SLPELPQSLELLDAENCKQLQF----IP 356 (635)
Q Consensus 295 ~~L~~L~Ls~n~~~~lp-~~l-----~~l~~L~~L~L~~n~~l~--------~lp~l~~sL~~L~l~~c~~l~~----~~ 356 (635)
++|++|++++|.++... ..+ ...+.|++|++++|.+.. .++.. ++|+++++++|..... +.
T Consensus 221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N~l~~~~~~~~~ 299 (319)
T cd00116 221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNKFGEEGAQLLA 299 (319)
T ss_pred CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCCCCCcHHHHHHHH
Confidence 66777777777655311 111 123567777777766541 11212 5677777777655422 22
Q ss_pred ccccCc-cccchhhhhhhh
Q 006695 357 EILSGL-EEVDASVLEKAT 374 (635)
Q Consensus 357 ~~~~~L-~~L~~l~L~~n~ 374 (635)
..+... ..|+.+++.+|+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 300 ESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHhhcCCchhhcccCCCC
Confidence 223333 445555555543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=1.6e-16 Score=141.47 Aligned_cols=175 Identities=29% Similarity=0.416 Sum_probs=134.2
Q ss_pred CCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcce
Q 006695 116 MPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITD 195 (635)
Q Consensus 116 ~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~ 195 (635)
+|.+-.+.+++.|.|++| .+..+|..+..+.+|+.|++.+
T Consensus 26 ~~gLf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~n--------------------------------------- 65 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSN--------------------------------------- 65 (264)
T ss_pred cccccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhccc---------------------------------------
Confidence 344555666666667766 4455555665555555554433
Q ss_pred EEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCC-cchhhhcCCCCCCEEEecCCCc
Q 006695 196 LILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLE-RFPEILEKMESVKCISLERTAI 274 (635)
Q Consensus 196 L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~-~~~~~l~~l~~L~~L~L~~n~l 274 (635)
|.|+++|.++..+++|+.|++.-|++ ..+|..|+.++.|+.|||..|++.+ .+|..|..|+.|+.|++++|.+
T Consensus 66 -----nqie~lp~~issl~klr~lnvgmnrl-~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf 139 (264)
T KOG0617|consen 66 -----NQIEELPTSISSLPKLRILNVGMNRL-NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF 139 (264)
T ss_pred -----chhhhcChhhhhchhhhheecchhhh-hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc
Confidence 44566677777778888888777654 5788999999999999999998876 5888899999999999999999
Q ss_pred cccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCCCCCccceecccccc
Q 006695 275 TELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCK 350 (635)
Q Consensus 275 ~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~l~~sL~~L~l~~c~ 350 (635)
.-+|..++. +++|+.|.+..|.+-++|..++.++.|++|.+.+|++. .+ |+.|-.|++.++.
T Consensus 140 e~lp~dvg~----------lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~-vl---ppel~~l~l~~~k 201 (264)
T KOG0617|consen 140 EILPPDVGK----------LTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT-VL---PPELANLDLVGNK 201 (264)
T ss_pred ccCChhhhh----------hcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee-ec---ChhhhhhhhhhhH
Confidence 999988755 58999999999999999999999999999999997553 33 3455666666654
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.06 E-value=1e-11 Score=129.84 Aligned_cols=212 Identities=19% Similarity=0.234 Sum_probs=125.0
Q ss_pred EeecCCCCCCCCCCC-C--CCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCC
Q 006695 59 YLHWHEYPSKALPFD-F--EPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCIN 135 (635)
Q Consensus 59 ~L~l~~~~l~~lp~~-~--~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~ 135 (635)
.|.+++-.++.+|.. + .+..-+..|++.|++..+|..+..+..|+.+.|++|.+-...+.+.++..|+.|+|+.| .
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-q 132 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-Q 132 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-h
Confidence 345566666777755 2 45556677778888888877777777777777777765444334555666666666554 2
Q ss_pred CcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCC
Q 006695 136 LTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTN 215 (635)
Q Consensus 136 l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~ 215 (635)
+..+|..+..+ -|+.|.+++|+++.+|..++.+..
T Consensus 133 lS~lp~~lC~l---------------------------------------------pLkvli~sNNkl~~lp~~ig~~~t 167 (722)
T KOG0532|consen 133 LSHLPDGLCDL---------------------------------------------PLKVLIVSNNKLTSLPEEIGLLPT 167 (722)
T ss_pred hhcCChhhhcC---------------------------------------------cceeEEEecCccccCCcccccchh
Confidence 22333322222 245555566666666666666666
Q ss_pred ccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCC
Q 006695 216 LEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGS 295 (635)
Q Consensus 216 L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~ 295 (635)
|..|+.+.|.+. .+|..++++.+|+.|.+..|.... +|+.+..+ .|..||++.|++..||-.| ..+.
T Consensus 168 l~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis~iPv~f----------r~m~ 234 (722)
T KOG0532|consen 168 LAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKISYLPVDF----------RKMR 234 (722)
T ss_pred HHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCceeecchhh----------hhhh
Confidence 666666666543 445556666666666666654433 44444433 3666666666666666554 3345
Q ss_pred CccEEEcCCCCCCcccccc---cCCCCccEEeccCCC
Q 006695 296 SLRQLNLSRNDSESLPASI---TQLSQLRSLHLKDCS 329 (635)
Q Consensus 296 ~L~~L~Ls~n~~~~lp~~l---~~l~~L~~L~L~~n~ 329 (635)
.|++|-|.+|.+.+-|+.| +...--++|+..-|.
T Consensus 235 ~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 235 HLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 6666666666666666543 333345666666663
No 24
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=8.1e-11 Score=114.11 Aligned_cols=128 Identities=23% Similarity=0.267 Sum_probs=101.5
Q ss_pred CCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEec
Q 006695 191 GNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLE 270 (635)
Q Consensus 191 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~ 270 (635)
..|++|+|++|.|+.+..++.-+++++.|++++|.+...- .+..+++|+.|||++|.+. .+..+-..+.+.+.|.|+
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 4688999999999999999999999999999999887543 3677899999999986543 344555667888899999
Q ss_pred CCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc--cccCCCCccEEeccCCCCCC
Q 006695 271 RTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA--SITQLSQLRSLHLKDCSMLS 332 (635)
Q Consensus 271 ~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~--~l~~l~~L~~L~L~~n~~l~ 332 (635)
+|.|.++.. ...+-+|..||+++|++..+.. +|++++-|++|.|.+|++.+
T Consensus 361 ~N~iE~LSG-----------L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 361 QNKIETLSG-----------LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhHhhhhh-----------hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 998876642 2445788999999999887753 58888888888888877654
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.00 E-value=3.2e-10 Score=121.80 Aligned_cols=178 Identities=24% Similarity=0.286 Sum_probs=91.5
Q ss_pred CCceEEEcCCCCCccccccCCCCC-CCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeec
Q 006695 77 ENLVKLNLPYSKVVQIWEGKKRAF-KLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFE 155 (635)
Q Consensus 77 ~~L~~L~L~~n~l~~l~~~~~~l~-~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~ 155 (635)
+.++.|++.+|.+..++.....+. +|+.|++++|++......+..+++|+.|++++| .+..+|...+.++.|+.|+++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhheecc
Confidence 444444444444444444444442 444444444442221123444444444444444 233333333344444444444
Q ss_pred CCCCCCccCCCC-CCCCCcEEecCCCCCCCccC--cccCCcceEEeccccccccCcccccCCCccEEEeecccccccchh
Q 006695 156 GCKSLRSFPSNL-HFMSPIKIDFSSCFNLTEFP--QISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLST 232 (635)
Q Consensus 156 ~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~p--~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~ 232 (635)
+| .+..+|..+ ....|+++.++++..+.... ....++..+.+.+|.+..++..++.++.|+.|++++|.+....+
T Consensus 195 ~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~- 272 (394)
T COG4886 195 GN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS- 272 (394)
T ss_pred CC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc-
Confidence 42 233344333 22224444444432221111 12245556666777777777777888888888888877654433
Q ss_pred cccCCCCCcEEecCCCCCCCcchhhh
Q 006695 233 SICKLKSLHVLVLDDCSKLERFPEIL 258 (635)
Q Consensus 233 ~~~~l~~L~~L~Ls~n~~~~~~~~~l 258 (635)
++.+.+|+.|+++++.+....+...
T Consensus 273 -~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 273 -LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred -ccccCccCEEeccCccccccchhhh
Confidence 7778888888888877776655543
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.97 E-value=6e-10 Score=119.69 Aligned_cols=194 Identities=21% Similarity=0.259 Sum_probs=153.7
Q ss_pred EEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCC-CCCEEeecCCCCCcccCccccCCCCCCEEeecCCCC
Q 006695 81 KLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETP-NLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKS 159 (635)
Q Consensus 81 ~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~-~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~ 159 (635)
.+++..+.+..-...+..++.++.|++.+|.+....+....+. +|+.|++++| ....+|..++.+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~- 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND- 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch-
Confidence 6888888886555666777889999999998555444455563 9999999998 556666778999999999998865
Q ss_pred CCccCCCC-CCCCCcEEecCCCCCCCccCcc---cCCcceEEeccccccccCcccccCCCccEEEeecccccccchhccc
Q 006695 160 LRSFPSNL-HFMSPIKIDFSSCFNLTEFPQI---SGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSIC 235 (635)
Q Consensus 160 l~~lp~~~-~l~~L~~L~l~~c~~l~~~p~~---~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~ 235 (635)
+..+|... ..+.|+.|++++ +.+..+|.. ...|++|.+++|.+..++..+..+.++..|.+.+|++.. ++..++
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~ 252 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LPESIG 252 (394)
T ss_pred hhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-ccchhc
Confidence 66666666 889999999999 467777763 355999999999888888888999999999988877543 366778
Q ss_pred CCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCch
Q 006695 236 KLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSS 280 (635)
Q Consensus 236 ~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~ 280 (635)
.+++|+.|++++|.+...-. ++.+.+|+.|++++|.+..++..
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 88899999999987765444 88899999999999998876543
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.4e-10 Score=118.15 Aligned_cols=211 Identities=18% Similarity=0.190 Sum_probs=129.4
Q ss_pred CCCCCCcEEEccCCCCCCCCC---CCCCCCCCCEEeecCCCCC--cccCccccCCCCCCEEeecCCCCCCccCCCCCCCC
Q 006695 97 KRAFKLKYVDIHNSQYLIRMP---DLSETPNLERTNLKNCINL--TCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMS 171 (635)
Q Consensus 97 ~~l~~L~~L~Ls~n~~~~~~p---~l~~l~~L~~L~L~~n~~l--~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~ 171 (635)
+++.+|+.+.|.++... ..+ ....+++++.|+|++|-.. ..+-.....+++|+.|+++.|+..--.....
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~---- 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT---- 192 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc----
Confidence 67888999999888633 333 3667899999999987322 2233446788899999998876332211111
Q ss_pred CcEEecCCCCCCCccCcccCCcceEEecccccc--ccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCC
Q 006695 172 PIKIDFSSCFNLTEFPQISGNITDLILSETAIQ--EVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCS 249 (635)
Q Consensus 172 L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~--~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~ 249 (635)
-..+..|+.|.|+.|+++ ++-.....+++|+.|+|..|.....-.....-+..|+.|+|++|+
T Consensus 193 ---------------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 193 ---------------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN 257 (505)
T ss_pred ---------------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence 012334555555555555 232335567778888888775433333334456778888888877
Q ss_pred CCCcc-hhhhcCCCCCCEEEecCCCcccc--CchhcccccchhhccCCCCccEEEcCCCCCCcccc--cccCCCCccEEe
Q 006695 250 KLERF-PEILEKMESVKCISLERTAITEL--PSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA--SITQLSQLRSLH 324 (635)
Q Consensus 250 ~~~~~-~~~l~~l~~L~~L~L~~n~l~~l--p~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~--~l~~l~~L~~L~ 324 (635)
+...- -...+.++.|+.|+++.|.|.++ |+. ..+ +-...+++|+.|+++.|++..++. .+..+++|+.|.
T Consensus 258 li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~-~s~----~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 258 LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDV-ESL----DKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred ccccccccccccccchhhhhccccCcchhcCCCc-cch----hhhcccccceeeecccCccccccccchhhccchhhhhh
Confidence 65432 13456778888888888887754 221 000 011335778888888888776663 355666777777
Q ss_pred ccCCCCCC
Q 006695 325 LKDCSMLS 332 (635)
Q Consensus 325 L~~n~~l~ 332 (635)
+..|.+.+
T Consensus 333 ~~~n~ln~ 340 (505)
T KOG3207|consen 333 ITLNYLNK 340 (505)
T ss_pred cccccccc
Confidence 66655543
No 28
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.92 E-value=7.6e-10 Score=127.72 Aligned_cols=300 Identities=24% Similarity=0.290 Sum_probs=178.1
Q ss_pred CCCcEEEeecCC--CCCCcccceeeecCCc-ccCCCccceEeecCCC-CCCCCCCCC-CCCCceEEEcCCCCCccccccC
Q 006695 22 PNLRFLKFYMPE--HNGVPIMISKVHLDQG-LEYLPNELRYLHWHEY-PSKALPFDF-EPENLVKLNLPYSKVVQIWEGK 96 (635)
Q Consensus 22 ~~L~~L~L~~n~--l~~~~~~~~~~~l~~~-l~~l~~~L~~L~l~~~-~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~~ 96 (635)
++|++|-+..|. +. .++.+ +..+|. |++|++++| .+..+|..+ .+-+|+.|+++++.++.+|.++
T Consensus 545 ~~L~tLll~~n~~~l~---------~is~~ff~~m~~-LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l 614 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLL---------EISGEFFRSLPL-LRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL 614 (889)
T ss_pred CccceEEEeecchhhh---------hcCHHHHhhCcc-eEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHH
Confidence 368888888764 22 34433 445555 999999865 468889887 6889999999999999999999
Q ss_pred CCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCC--CCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCc
Q 006695 97 KRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCI--NLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPI 173 (635)
Q Consensus 97 ~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~--~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~ 173 (635)
+++..|.+|++..+.....+|. ...+++|++|.+..-. .....-..+..+.+|+.+....... ..+-....+..|.
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~ 693 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLR 693 (889)
T ss_pred HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHH
Confidence 9999999999998887766776 4449999999887642 1112223345666666666643322 1111111222222
Q ss_pred ----EEecCCCCCCCccC--cccCCcceEEeccccccccCc-c-----ccc-CCCccEEEeecccccccchhcccCCCCC
Q 006695 174 ----KIDFSSCFNLTEFP--QISGNITDLILSETAIQEVPS-S-----IEC-LTNLEKLYINRCMRLKRLSTSICKLKSL 240 (635)
Q Consensus 174 ----~L~l~~c~~l~~~p--~~~~~L~~L~L~~n~i~~lp~-~-----~~~-l~~L~~L~L~~n~~~~~lp~~~~~l~~L 240 (635)
.+.+.+|..-+..+ ..+.+|+.|.+.++.+.++.. + ... ++++..+...+|.....+ ......++|
T Consensus 694 ~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l-~~~~f~~~L 772 (889)
T KOG4658|consen 694 SLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL-TWLLFAPHL 772 (889)
T ss_pred HHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc-chhhccCcc
Confidence 22222332222222 334788888888888765432 1 111 334555555555544332 222357899
Q ss_pred cEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCc
Q 006695 241 HVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQL 320 (635)
Q Consensus 241 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L 320 (635)
+.|.+..|...+.+......+..+..+.+..+.+..++. +.++ ..++++..+.++ . +.|
T Consensus 773 ~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~-~~~l-------~~l~~i~~~~l~------------~-~~l 831 (889)
T KOG4658|consen 773 TSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRM-LCSL-------GGLPQLYWLPLS------------F-LKL 831 (889)
T ss_pred cEEEEecccccccCCCHHHHhhhcccEEeccccccccee-eecC-------CCCceeEecccC------------c-cch
Confidence 999999999998888777777777766555554443320 0000 111222222211 1 126
Q ss_pred cEEeccCCCCCCcCCCCCCccceeccccc-ccccccCcc
Q 006695 321 RSLHLKDCSMLSSLPELPQSLELLDAENC-KQLQFIPEI 358 (635)
Q Consensus 321 ~~L~L~~n~~l~~lp~l~~sL~~L~l~~c-~~l~~~~~~ 358 (635)
..+.+..|+.++.+|. +..+.+.+| ..+...|+.
T Consensus 832 ~~~~ve~~p~l~~~P~----~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 832 EELIVEECPKLGKLPL----LSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred hheehhcCcccccCcc----ccccceeccccceeecCCc
Confidence 6777777777776653 344555554 555555544
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.91 E-value=5.6e-10 Score=128.81 Aligned_cols=123 Identities=20% Similarity=0.260 Sum_probs=81.5
Q ss_pred cceEeecCCCCCCCCCCCCCCCCceEEEcCCCC--Ccccccc-CCCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeec
Q 006695 56 ELRYLHWHEYPSKALPFDFEPENLVKLNLPYSK--VVQIWEG-KKRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLK 131 (635)
Q Consensus 56 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~--l~~l~~~-~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~ 131 (635)
..|...+.++.+..++.....++|++|-+..|. +..++.. +..++.|++|||++|.-...+|+ ++.+-+|++|+|+
T Consensus 524 ~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS 603 (889)
T ss_pred heeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence 467777777777777776655577777777765 4555433 56677777777777766667774 6777777777777
Q ss_pred CCCCCcccCccccCCCCCCEEeecCCCCCCccCCCC-CCCCCcEEecCC
Q 006695 132 NCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNL-HFMSPIKIDFSS 179 (635)
Q Consensus 132 ~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~ 179 (635)
++ ....+|.+++++++|.+|++..+..+..+|... .+.+|++|.+..
T Consensus 604 ~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 604 DT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred CC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 75 455677777777777777777666555554444 366666666544
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=1.2e-09 Score=101.81 Aligned_cols=122 Identities=22% Similarity=0.293 Sum_probs=39.9
Q ss_pred CCccEEEeecccccccchhccc-CCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhcc
Q 006695 214 TNLEKLYINRCMRLKRLSTSIC-KLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYI 292 (635)
Q Consensus 214 ~~L~~L~L~~n~~~~~lp~~~~-~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~ 292 (635)
.++++|+|.+|.+... +.++ .+.+|+.|++++|.+... +.+..++.|++|++++|.|+.++..+. .
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~---------~ 85 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLD---------K 85 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHH---------H
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchH---------H
Confidence 3455555555554332 1222 345566666666555432 235556667777777777776653221 1
Q ss_pred CCCCccEEEcCCCCCCcccc--cccCCCCccEEeccCCCCCCcCCC-------CCCccceeccccc
Q 006695 293 GGSSLRQLNLSRNDSESLPA--SITQLSQLRSLHLKDCSMLSSLPE-------LPQSLELLDAENC 349 (635)
Q Consensus 293 ~~~~L~~L~Ls~n~~~~lp~--~l~~l~~L~~L~L~~n~~l~~lp~-------l~~sL~~L~l~~c 349 (635)
.+++|++|++++|++..+.. .++.+++|+.|+|.+|+.... +. ..|+|+.||-...
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEET
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEc
Confidence 24667777777777655543 356777888888888777543 22 3467777776543
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.85 E-value=7.3e-11 Score=123.61 Aligned_cols=212 Identities=17% Similarity=0.205 Sum_probs=157.1
Q ss_pred eecCCCcccccChhhhc-CCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCC-CCCCce
Q 006695 3 LDLSKITSIHLSPQAFA-NMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDF-EPENLV 80 (635)
Q Consensus 3 LdLs~n~~~~l~~~~f~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~ 80 (635)
|.|++-++..++..++. .+..-...+++.|++. .+|..+..+-. |..|.++.|.+..+|... .+..|+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~---------elp~~~~~f~~-Le~liLy~n~~r~ip~~i~~L~~lt 124 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS---------ELPEEACAFVS-LESLILYHNCIRTIPEAICNLEALT 124 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccc---------cCchHHHHHHH-HHHHHHHhccceecchhhhhhhHHH
Confidence 44555565566655554 4555667888888887 44555554433 888888999999999886 789999
Q ss_pred EEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCC
Q 006695 81 KLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSL 160 (635)
Q Consensus 81 ~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l 160 (635)
.|+|+.|++..+|..+..|+ |+.|-+++|++....++++.++.|..|+.+.| .+..+|..++.+.+|+.|++..|+ +
T Consensus 125 ~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~-l 201 (722)
T KOG0532|consen 125 FLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNH-L 201 (722)
T ss_pred HhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhh-h
Confidence 99999999999999988775 89999999986555557889999999999988 566778889999999999998865 3
Q ss_pred CccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhccc---CC
Q 006695 161 RSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSIC---KL 237 (635)
Q Consensus 161 ~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~---~l 237 (635)
..+|..... -.|..||++.|+|..||-.|.+|+.|++|-|.+|.+. ..|..++ ..
T Consensus 202 ~~lp~El~~---------------------LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkV 259 (722)
T KOG0532|consen 202 EDLPEELCS---------------------LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKV 259 (722)
T ss_pred hhCCHHHhC---------------------CceeeeecccCceeecchhhhhhhhheeeeeccCCCC-CChHHHHhccce
Confidence 333332211 1366788888899999999999999999999988764 3444332 23
Q ss_pred CCCcEEecCCCC
Q 006695 238 KSLHVLVLDDCS 249 (635)
Q Consensus 238 ~~L~~L~Ls~n~ 249 (635)
.=-++|+..-|.
T Consensus 260 HIFKyL~~qA~q 271 (722)
T KOG0532|consen 260 HIFKYLSTQACQ 271 (722)
T ss_pred eeeeeecchhcc
Confidence 334667776663
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.84 E-value=3e-09 Score=99.20 Aligned_cols=90 Identities=23% Similarity=0.291 Sum_probs=22.8
Q ss_pred CCCCCCCCCCCCCceEEEcCCCCCccccccCC-CCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccc-
Q 006695 66 PSKALPFDFEPENLVKLNLPYSKVVQIWEGKK-RAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSV- 143 (635)
Q Consensus 66 ~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~-~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i- 143 (635)
.+...|...++.++++|+|.+|.|+.+ +.+. .+.+|+.|+|++|.+ +.++.+..+++|+.|++++|... .+...+
T Consensus 8 ~i~~~~~~~n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I-~~l~~l~~L~~L~~L~L~~N~I~-~i~~~l~ 84 (175)
T PF14580_consen 8 MIEQIAQYNNPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQI-TKLEGLPGLPRLKTLDLSNNRIS-SISEGLD 84 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHH
T ss_pred ccccccccccccccccccccccccccc-cchhhhhcCCCEEECCCCCC-ccccCccChhhhhhcccCCCCCC-ccccchH
Confidence 344444444566778888888888776 3454 577888888888873 45666777788888888877443 333333
Q ss_pred cCCCCCCEEeecCCC
Q 006695 144 QNFNHLSMLCFEGCK 158 (635)
Q Consensus 144 ~~l~~L~~L~L~~~~ 158 (635)
..+++|+.|++++|+
T Consensus 85 ~~lp~L~~L~L~~N~ 99 (175)
T PF14580_consen 85 KNLPNLQELYLSNNK 99 (175)
T ss_dssp HH-TT--EEE-TTS-
T ss_pred HhCCcCCEEECcCCc
Confidence 346677777776654
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.4e-09 Score=111.03 Aligned_cols=204 Identities=13% Similarity=0.131 Sum_probs=92.5
Q ss_pred ceEeecCCCCCCCCCCC--C-CCCCceEEEcCCCCCccc---cccCCCCCCCcEEEccCCCCCCCCCC--CCCCCCCCEE
Q 006695 57 LRYLHWHEYPSKALPFD--F-EPENLVKLNLPYSKVVQI---WEGKKRAFKLKYVDIHNSQYLIRMPD--LSETPNLERT 128 (635)
Q Consensus 57 L~~L~l~~~~l~~lp~~--~-~l~~L~~L~L~~n~l~~l---~~~~~~l~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L 128 (635)
||...+++++....+.. . .+++++.|||++|-+... -.-...+++|+.|+|+.|++..-... -..++.|+.|
T Consensus 123 L~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L 202 (505)
T KOG3207|consen 123 LREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQL 202 (505)
T ss_pred hhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheE
Confidence 55555555555554431 1 355555555555544422 12234555555555555554332221 1234445555
Q ss_pred eecCCCCCc-ccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccC-cccCCcceEEecccccccc
Q 006695 129 NLKNCINLT-CVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFP-QISGNITDLILSETAIQEV 206 (635)
Q Consensus 129 ~L~~n~~l~-~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p-~~~~~L~~L~L~~n~i~~l 206 (635)
.|+.|.... .+......+++|+.|++..|..+.. ...+ ..+..|++|+|++|.+...
T Consensus 203 ~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~---------------------~~~~~~i~~~L~~LdLs~N~li~~ 261 (505)
T KOG3207|consen 203 VLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI---------------------KATSTKILQTLQELDLSNNNLIDF 261 (505)
T ss_pred EeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce---------------------ecchhhhhhHHhhccccCCccccc
Confidence 555553321 1111223334444444444321110 0111 2234566666666666655
Q ss_pred C--cccccCCCccEEEeeccccccc-chhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcc
Q 006695 207 P--SSIECLTNLEKLYINRCMRLKR-LSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFAN 283 (635)
Q Consensus 207 p--~~~~~l~~L~~L~L~~n~~~~~-lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~ 283 (635)
+ ...+.++.|+.|+++.|.+... .|+. . .-+....+++|+.|++..|+|.+++. +.+
T Consensus 262 ~~~~~~~~l~~L~~Lnls~tgi~si~~~d~-------~------------s~~kt~~f~kL~~L~i~~N~I~~w~s-l~~ 321 (505)
T KOG3207|consen 262 DQGYKVGTLPGLNQLNLSSTGIASIAEPDV-------E------------SLDKTHTFPKLEYLNISENNIRDWRS-LNH 321 (505)
T ss_pred ccccccccccchhhhhccccCcchhcCCCc-------c------------chhhhcccccceeeecccCccccccc-cch
Confidence 5 2356666666666666544321 1110 0 00112345566666666666665543 111
Q ss_pred cccchhhccCCCCccEEEcCCCCCC
Q 006695 284 LEGLKDLYIGGSSLRQLNLSRNDSE 308 (635)
Q Consensus 284 l~~L~~l~~~~~~L~~L~Ls~n~~~ 308 (635)
+..+.+|+.|.+..|.+.
T Consensus 322 -------l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 322 -------LRTLENLKHLRITLNYLN 339 (505)
T ss_pred -------hhccchhhhhhccccccc
Confidence 123356666666666653
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.74 E-value=2.4e-09 Score=104.08 Aligned_cols=194 Identities=14% Similarity=0.088 Sum_probs=91.0
Q ss_pred cceEeecCCCCCCCCCCCC-CCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCC-CC---CCCCCCCCCEEee
Q 006695 56 ELRYLHWHEYPSKALPFDF-EPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIR-MP---DLSETPNLERTNL 130 (635)
Q Consensus 56 ~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~-~p---~l~~l~~L~~L~L 130 (635)
+|+.+.++++.-+.+-... .-+.|+++...++.+...|.- -....+. |.....-... -| .......|++|+|
T Consensus 215 ~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l-~pe~~~~--D~~~~E~~t~~G~~~~~~dTWq~LtelDL 291 (490)
T KOG1259|consen 215 NLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSL-LPETILA--DPSGSEPSTSNGSALVSADTWQELTELDL 291 (490)
T ss_pred hhheeeeeccchhheeceeecCchhheeeeecccccccccc-cchhhhc--CccCCCCCccCCceEEecchHhhhhhccc
Confidence 4777777777766665542 446677777776665543211 1111111 1111110000 00 1222345666666
Q ss_pred cCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCc---cCcccCCcceEEeccccccccC
Q 006695 131 KNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTE---FPQISGNITDLILSETAIQEVP 207 (635)
Q Consensus 131 ~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~---~p~~~~~L~~L~L~~n~i~~lp 207 (635)
++| ..+.+..++.-+++++.|+++.|... .+.....+.+|+.|+++++ .+.. ...-++|++.|.|++|.|+.+
T Consensus 292 S~N-~I~~iDESvKL~Pkir~L~lS~N~i~-~v~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~N~iE~L- 367 (490)
T KOG1259|consen 292 SGN-LITQIDESVKLAPKLRRLILSQNRIR-TVQNLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQNKIETL- 367 (490)
T ss_pred ccc-chhhhhhhhhhccceeEEecccccee-eehhhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeehhhhhHhhh-
Confidence 665 44555556666666666666665422 2222123333333333332 1111 112234555555555555544
Q ss_pred cccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCc
Q 006695 208 SSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPS 279 (635)
Q Consensus 208 ~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~ 279 (635)
+.++.+-+|..||+++|++.... -...++++|.|+.+.|.+|.+..+|+
T Consensus 368 SGL~KLYSLvnLDl~~N~Ie~ld-----------------------eV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 368 SGLRKLYSLVNLDLSSNQIEELD-----------------------EVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhHhhhhheeccccccchhhHH-----------------------HhcccccccHHHHHhhcCCCccccch
Confidence 23444444444444444432210 11345566666666677776666654
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.64 E-value=3.4e-09 Score=105.44 Aligned_cols=244 Identities=16% Similarity=0.160 Sum_probs=116.7
Q ss_pred CCCCceEEEcCCCCCc-----cccccCCCCCCCcEEEccCCC---CCCCCC--------CCCCCCCCCEEeecCCCCCcc
Q 006695 75 EPENLVKLNLPYSKVV-----QIWEGKKRAFKLKYVDIHNSQ---YLIRMP--------DLSETPNLERTNLKNCINLTC 138 (635)
Q Consensus 75 ~l~~L~~L~L~~n~l~-----~l~~~~~~l~~L~~L~Ls~n~---~~~~~p--------~l~~l~~L~~L~L~~n~~l~~ 138 (635)
....++.++|++|.+. .+-..+...++|+..++++-- ....+| .+-++++|++|+|++|..-..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 4567888888888776 344556677788888887632 112223 244566777777777744332
Q ss_pred cCcc----ccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccC-----cc
Q 006695 139 VPSS----VQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVP-----SS 209 (635)
Q Consensus 139 ~~~~----i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp-----~~ 209 (635)
-+.. +.....|++|.|.+|..-. .....--..|..|. . .......+.|+.+...+|++..-+ ..
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~-~ag~~l~~al~~l~--~----~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~ 180 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGP-EAGGRLGRALFELA--V----NKKAASKPKLRVFICGRNRLENGGATALAEA 180 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCCh-hHHHHHHHHHHHHH--H----HhccCCCcceEEEEeeccccccccHHHHHHH
Confidence 2222 3445666666665553111 10000000000000 0 000112245666666666655433 22
Q ss_pred cccCCCccEEEeecccccc----cchhcccCCCCCcEEecCCCCCCCc----chhhhcCCCCCCEEEecCCCccccC-ch
Q 006695 210 IECLTNLEKLYINRCMRLK----RLSTSICKLKSLHVLVLDDCSKLER----FPEILEKMESVKCISLERTAITELP-SS 280 (635)
Q Consensus 210 ~~~l~~L~~L~L~~n~~~~----~lp~~~~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~lp-~~ 280 (635)
+...+.|+.+.+..|.+.. .+-..+..+++|+.|||.+|.+... +...+..+++|++|++++|.+..=- ..
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence 4555666666666655432 1223445556666666666554432 2334445555666666655554210 00
Q ss_pred hcccccchhhccCCCCccEEEcCCCCCCc-----ccccccCCCCccEEeccCCCC
Q 006695 281 FANLEGLKDLYIGGSSLRQLNLSRNDSES-----LPASITQLSQLRSLHLKDCSM 330 (635)
Q Consensus 281 ~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~-----lp~~l~~l~~L~~L~L~~n~~ 330 (635)
+ ...+-...++|+.|.+.+|.++. +-..+...+.|..|+|++|.+
T Consensus 261 ~-----~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 261 F-----VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred H-----HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 0 00111224555555555555431 222333455555555555443
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.63 E-value=8.4e-09 Score=102.70 Aligned_cols=233 Identities=20% Similarity=0.173 Sum_probs=151.7
Q ss_pred ccceEeecCCCCCCCCC-----CCC-CCCCceEEEcCCCC---C-cccc-------ccCCCCCCCcEEEccCCCCCCCCC
Q 006695 55 NELRYLHWHEYPSKALP-----FDF-EPENLVKLNLPYSK---V-VQIW-------EGKKRAFKLKYVDIHNSQYLIRMP 117 (635)
Q Consensus 55 ~~L~~L~l~~~~l~~lp-----~~~-~l~~L~~L~L~~n~---l-~~l~-------~~~~~l~~L~~L~Ls~n~~~~~~p 117 (635)
+.++.++++||.+..=. ..+ ..++|++.+++.-- + ..+| +.+...++|++||||+|-+-...+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 46999999999874321 112 35688888887532 2 1344 345677899999999998764443
Q ss_pred -C----CCCCCCCCEEeecCCCCCcc-------------cCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCC
Q 006695 118 -D----LSETPNLERTNLKNCINLTC-------------VPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSS 179 (635)
Q Consensus 118 -~----l~~l~~L~~L~L~~n~~l~~-------------~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~ 179 (635)
. ++.+.+|++|.|.+|..-.. ....++.-++|+++...+|+ +...+..
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~------------- 175 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGAT------------- 175 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHH-------------
Confidence 2 67789999999999943221 11123344556666555433 1111110
Q ss_pred CCCCCccCcccCCcceEEeccccccc-----cCcccccCCCccEEEeeccccccc----chhcccCCCCCcEEecCCCCC
Q 006695 180 CFNLTEFPQISGNITDLILSETAIQE-----VPSSIECLTNLEKLYINRCMRLKR----LSTSICKLKSLHVLVLDDCSK 250 (635)
Q Consensus 180 c~~l~~~p~~~~~L~~L~L~~n~i~~-----lp~~~~~l~~L~~L~L~~n~~~~~----lp~~~~~l~~L~~L~Ls~n~~ 250 (635)
-+...-...+.|+.+.+..|.|.. +-..+.+++.|++|||++|.+... +...+..+++|+.|++++|.+
T Consensus 176 --~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 176 --ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred --HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 000011223578888888887752 345588999999999999987643 455677899999999999988
Q ss_pred CCcchh----hh-cCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCC
Q 006695 251 LERFPE----IL-EKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSE 308 (635)
Q Consensus 251 ~~~~~~----~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~ 308 (635)
...-.. .+ ...++|+.|.+.+|.|+.=... .+...+...+.|+.|+|++|+++
T Consensus 254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~-----~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 254 ENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL-----ALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccccHHHHHHHHhccCCCCceeccCcchhHHHHHH-----HHHHHHhcchhhHHhcCCccccc
Confidence 764332 23 3478999999999999821100 01122344689999999999984
No 37
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.61 E-value=1.7e-07 Score=97.77 Aligned_cols=129 Identities=23% Similarity=0.425 Sum_probs=66.7
Q ss_pred CcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecC
Q 006695 192 NITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLER 271 (635)
Q Consensus 192 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~ 271 (635)
+++.|++++|.++.+|. -..+|+.|.+++|..+..+|..+ .++|+.|++++|..+..+|. +|+.|++.+
T Consensus 53 ~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~ 121 (426)
T PRK15386 53 ASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIKG 121 (426)
T ss_pred CCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeCC
Confidence 34445555555555541 12245555555555555555433 24566666666654444443 355666665
Q ss_pred CCc---cccCchhcccccchhhccCCCCccEEEcCCCC-C--CcccccccCCCCccEEeccCCCCCCcCCCCCCccceec
Q 006695 272 TAI---TELPSSFANLEGLKDLYIGGSSLRQLNLSRND-S--ESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLD 345 (635)
Q Consensus 272 n~l---~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~-~--~~lp~~l~~l~~L~~L~L~~n~~l~~lp~l~~sL~~L~ 345 (635)
+.. ..+|. +|+.|.+.+++ . ..+|. .--++|++|++++|..+...+.+|.+|+.|+
T Consensus 122 n~~~~L~~LPs----------------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ 183 (426)
T PRK15386 122 SATDSIKNVPN----------------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKLPESLQSIT 183 (426)
T ss_pred CCCcccccCcc----------------hHhheecccccccccccccc--ccCCcccEEEecCCCcccCcccccccCcEEE
Confidence 543 33442 45556554332 1 11110 0115677777777776543334667777777
Q ss_pred cccc
Q 006695 346 AENC 349 (635)
Q Consensus 346 l~~c 349 (635)
++.+
T Consensus 184 ls~n 187 (426)
T PRK15386 184 LHIE 187 (426)
T ss_pred eccc
Confidence 7654
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.60 E-value=1.1e-07 Score=107.48 Aligned_cols=105 Identities=27% Similarity=0.319 Sum_probs=76.7
Q ss_pred CcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcc-ccCchhcccccchhhccCCCCccEEEcCCCCCC-cccccccCC
Q 006695 240 LHVLVLDDCSKLERFPEILEKMESVKCISLERTAIT-ELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSE-SLPASITQL 317 (635)
Q Consensus 240 L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~-~lp~~l~~l 317 (635)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.++ .+|..+ ..+++|+.|+|++|++. .+|..++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~----------~~l~~L~~LdLs~N~lsg~iP~~l~~L 489 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL----------GSITSLEVLDLSYNSFNGSIPESLGQL 489 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH----------hCCCCCCEEECCCCCCCCCCchHHhcC
Confidence 677788888777778888888888888888888776 566554 34577788888888864 677778888
Q ss_pred CCccEEeccCCCCCCcCCCCC----Cccceecccccccccc
Q 006695 318 SQLRSLHLKDCSMLSSLPELP----QSLELLDAENCKQLQF 354 (635)
Q Consensus 318 ~~L~~L~L~~n~~l~~lp~l~----~sL~~L~l~~c~~l~~ 354 (635)
++|+.|+|++|++.+.+|..+ .++..+++.+|+.+-.
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCCCEEECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence 888888888888877777632 3455677777765543
No 39
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.56 E-value=1.9e-07 Score=97.50 Aligned_cols=160 Identities=21% Similarity=0.369 Sum_probs=109.2
Q ss_pred cccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCC-CccccCchhcccccch
Q 006695 210 IECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERT-AITELPSSFANLEGLK 288 (635)
Q Consensus 210 ~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~ 288 (635)
+..+.+++.|++++|. +..+|. -..+|++|.+++|..+..+|+.+. ++|+.|++++| .+..+|.
T Consensus 48 ~~~~~~l~~L~Is~c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~--------- 112 (426)
T PRK15386 48 IEEARASGRLYIKDCD-IESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE--------- 112 (426)
T ss_pred HHHhcCCCEEEeCCCC-CcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc---------
Confidence 4457899999999995 455562 234799999999999888887653 68999999998 7777764
Q ss_pred hhccCCCCccEEEcCCCC---CCcccccccCCCCccEEeccCCCCC--CcCC-CCCCccceecccccccccccCccccCc
Q 006695 289 DLYIGGSSLRQLNLSRND---SESLPASITQLSQLRSLHLKDCSML--SSLP-ELPQSLELLDAENCKQLQFIPEILSGL 362 (635)
Q Consensus 289 ~l~~~~~~L~~L~Ls~n~---~~~lp~~l~~l~~L~~L~L~~n~~l--~~lp-~l~~sL~~L~l~~c~~l~~~~~~~~~L 362 (635)
+|+.|+++++. +..+|. +|+.|.+.+++.. ..+| .+|++|++|++++|.... +|..+.
T Consensus 113 -------sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~LP-- 176 (426)
T PRK15386 113 -------SVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKLP-- 176 (426)
T ss_pred -------ccceEEeCCCCCcccccCcc------hHhheeccccccccccccccccCCcccEEEecCCCccc-Cccccc--
Confidence 57788888776 455664 5667777544322 3344 367899999999998664 333222
Q ss_pred cccchhhhhhhhhc---ccccccCCccceEEEcCCcccchhh
Q 006695 363 EEVDASVLEKATFL---NSAFTLNSACVKFVFSNCLKLNEKA 401 (635)
Q Consensus 363 ~~L~~l~L~~n~~~---~~~~~l~~~~~~l~~~nC~~L~~~~ 401 (635)
.+|+.|.++.+... -....++... .+.|.+|.+++...
T Consensus 177 ~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~ 217 (426)
T PRK15386 177 ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDV 217 (426)
T ss_pred ccCcEEEecccccccccCccccccccc-EechhhhcccCHHH
Confidence 35555666554311 1122344444 88999998887643
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.55 E-value=1.4e-07 Score=106.71 Aligned_cols=112 Identities=24% Similarity=0.318 Sum_probs=95.7
Q ss_pred CccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcc-ccCchhcccccchhhccC
Q 006695 215 NLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAIT-ELPSSFANLEGLKDLYIG 293 (635)
Q Consensus 215 ~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~l~~~ 293 (635)
.++.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|+++ .+|..+ ..
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l----------~~ 488 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL----------GQ 488 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH----------hc
Confidence 4788999999999999999999999999999999999999999999999999999999998 677665 44
Q ss_pred CCCccEEEcCCCCCC-cccccccC-CCCccEEeccCCCCCCcCCC
Q 006695 294 GSSLRQLNLSRNDSE-SLPASITQ-LSQLRSLHLKDCSMLSSLPE 336 (635)
Q Consensus 294 ~~~L~~L~Ls~n~~~-~lp~~l~~-l~~L~~L~L~~n~~l~~lp~ 336 (635)
+++|+.|+|++|.+. .+|..+.. +.++..+++.+|+.+...|.
T Consensus 489 L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 489 LTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 588999999999974 78887765 35778999999987776654
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.48 E-value=1.7e-08 Score=108.89 Aligned_cols=98 Identities=17% Similarity=0.197 Sum_probs=48.1
Q ss_pred ceEeecCCCCCCCCCCCC-CCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCC
Q 006695 57 LRYLHWHEYPSKALPFDF-EPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCIN 135 (635)
Q Consensus 57 L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~ 135 (635)
|..|++.+|.++.+.... .+.+|++|++++|.|+++ .++..++.|+.|++++|. +..+..+..+++|+.+++++|..
T Consensus 97 l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l~l~~n~i 174 (414)
T KOG0531|consen 97 LEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNL-ISDISGLESLKSLKLLDLSYNRI 174 (414)
T ss_pred eeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCc-chhccCCccchhhhcccCCcchh
Confidence 555555555555555422 455555555555555555 334445555555555554 33344444455555555555533
Q ss_pred CcccC-ccccCCCCCCEEeecCC
Q 006695 136 LTCVP-SSVQNFNHLSMLCFEGC 157 (635)
Q Consensus 136 l~~~~-~~i~~l~~L~~L~L~~~ 157 (635)
...-+ . ...+.+++.+.+.+|
T Consensus 175 ~~ie~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 175 VDIENDE-LSELISLEELDLGGN 196 (414)
T ss_pred hhhhhhh-hhhccchHHHhccCC
Confidence 22211 1 344445555555443
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.46 E-value=1.9e-07 Score=71.44 Aligned_cols=58 Identities=28% Similarity=0.348 Sum_probs=40.9
Q ss_pred CcceEEeccccccccCc-ccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCC
Q 006695 192 NITDLILSETAIQEVPS-SIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCS 249 (635)
Q Consensus 192 ~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~ 249 (635)
+|++|++++|.++.+|. .|.++++|++|++++|.+....+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 56777777777777764 46777777777777777766666666777777777776664
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.45 E-value=2.4e-08 Score=107.77 Aligned_cols=238 Identities=20% Similarity=0.184 Sum_probs=111.9
Q ss_pred CCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCCCCcccCccccCCCCCCEEee
Q 006695 76 PENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCF 154 (635)
Q Consensus 76 l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L 154 (635)
+..+..++++.|.+..+-..+..+++|+.|++.+|++ ..+.. +..+++|++|++++|.+... ..+..++.|+.|++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i-~~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKI-EKIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccch-hhcccchhhhhcchheeccccccccc--cchhhccchhhhee
Confidence 3445555555555555434455556666666666653 23333 55566666666666533322 13444445555555
Q ss_pred cCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcc-cccCCCccEEEeecccccccchhc
Q 006695 155 EGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSS-IECLTNLEKLYINRCMRLKRLSTS 233 (635)
Q Consensus 155 ~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~ 233 (635)
.+|. +..+...-. +.+|+.+++++|.+..+... ...+.+|+.+.+.+|.+...-.
T Consensus 148 ~~N~-i~~~~~~~~---------------------l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~-- 203 (414)
T KOG0531|consen 148 SGNL-ISDISGLES---------------------LKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG-- 203 (414)
T ss_pred ccCc-chhccCCcc---------------------chhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc--
Confidence 5543 222221111 23344444444444444332 3444555555555544432211
Q ss_pred ccCCCCCcEEecCCCCCCCcchhhhcCCC--CCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccc
Q 006695 234 ICKLKSLHVLVLDDCSKLERFPEILEKME--SVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLP 311 (635)
Q Consensus 234 ~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~--~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp 311 (635)
+..+..+..+++..|.+...-+ +..+. +|+.+++++|.+..++..+ ..+..+..|++..|++..+.
T Consensus 204 ~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~----------~~~~~l~~l~~~~n~~~~~~ 271 (414)
T KOG0531|consen 204 LDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSPEGL----------ENLKNLPVLDLSSNRISNLE 271 (414)
T ss_pred hHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccccccccc----------cccccccccchhhccccccc
Confidence 1122222223444433322111 11112 3666777777766654222 23456667777777665554
Q ss_pred ccccCCCCccEEeccCCCCCCcC---C----CCCCccceeccccccccc
Q 006695 312 ASITQLSQLRSLHLKDCSMLSSL---P----ELPQSLELLDAENCKQLQ 353 (635)
Q Consensus 312 ~~l~~l~~L~~L~L~~n~~l~~l---p----~l~~sL~~L~l~~c~~l~ 353 (635)
.+.....+..+....++..... . ...+.++.+.+.+++.-.
T Consensus 272 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 272 -GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred -cccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence 3455556666666665544221 1 122456666666665544
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.43 E-value=1.9e-07 Score=71.46 Aligned_cols=61 Identities=18% Similarity=0.263 Sum_probs=40.3
Q ss_pred CCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCc
Q 006695 214 TNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAI 274 (635)
Q Consensus 214 ~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l 274 (635)
++|++|++++|++....+..|.++++|++|++++|.+....+..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4567777777766655556666677777777776666655556666676677766666654
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=3.3e-09 Score=103.16 Aligned_cols=170 Identities=22% Similarity=0.269 Sum_probs=108.3
Q ss_pred CCcEEEccCCCCCCCCC--CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCC---CCCCCcEE
Q 006695 101 KLKYVDIHNSQYLIRMP--DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNL---HFMSPIKI 175 (635)
Q Consensus 101 ~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~---~l~~L~~L 175 (635)
.|++|||+...+....- -++.+.+|+.|.|.|+.....+...+..-.+|+.|+++.|..++...... .++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 47777877765442211 25667778888888877766666677777888888888887766544332 67778888
Q ss_pred ecCCCCCCCcc-----CcccCCcceEEecccc----ccccCcccccCCCccEEEeeccccccc-chhcccCCCCCcEEec
Q 006695 176 DFSSCFNLTEF-----PQISGNITDLILSETA----IQEVPSSIECLTNLEKLYINRCMRLKR-LSTSICKLKSLHVLVL 245 (635)
Q Consensus 176 ~l~~c~~l~~~-----p~~~~~L~~L~L~~n~----i~~lp~~~~~l~~L~~L~L~~n~~~~~-lp~~~~~l~~L~~L~L 245 (635)
++++|...+.. ..+.++|+.|+|+|+. ...+..-...+++|..|||++|..+.. .-..|.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 88888655432 1334678888887762 222322356778888888888766543 2344567777888888
Q ss_pred CCCCCCCcchhh---hcCCCCCCEEEecCC
Q 006695 246 DDCSKLERFPEI---LEKMESVKCISLERT 272 (635)
Q Consensus 246 s~n~~~~~~~~~---l~~l~~L~~L~L~~n 272 (635)
+.|... .|+. +..+++|.+|++.++
T Consensus 346 sRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 777532 3432 344555666655543
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=1.4e-08 Score=98.89 Aligned_cols=187 Identities=17% Similarity=0.184 Sum_probs=133.1
Q ss_pred CCceEEEcCCCCCc--cccccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCc--cccCCCCCCE
Q 006695 77 ENLVKLNLPYSKVV--QIWEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPS--SVQNFNHLSM 151 (635)
Q Consensus 77 ~~L~~L~L~~n~l~--~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~--~i~~l~~L~~ 151 (635)
..|++|||+...|+ ++..-++.+.+|+.|.|.++++...+- .+..-.+|+.|+|++|+..++... -+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 45999999999887 454556889999999999998665544 477889999999999977665432 3678999999
Q ss_pred EeecCCCCCCccCCCC---CCCCCcEEecCCCCCCC------ccCcccCCcceEEecccc-ccc-cCcccccCCCccEEE
Q 006695 152 LCFEGCKSLRSFPSNL---HFMSPIKIDFSSCFNLT------EFPQISGNITDLILSETA-IQE-VPSSIECLTNLEKLY 220 (635)
Q Consensus 152 L~L~~~~~l~~lp~~~---~l~~L~~L~l~~c~~l~------~~p~~~~~L~~L~L~~n~-i~~-lp~~~~~l~~L~~L~ 220 (635)
|+++.|...+..-..+ --..|+.|+++||..-- .+-.-.++|..|||+.+. ++. +-..|..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 9999997655432211 34678899999985322 222334789999999874 332 223467899999999
Q ss_pred eecccccccchh---cccCCCCCcEEecCCCCCCCcchhhhcCCCCCC
Q 006695 221 INRCMRLKRLST---SICKLKSLHVLVLDDCSKLERFPEILEKMESVK 265 (635)
Q Consensus 221 L~~n~~~~~lp~---~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~ 265 (635)
++.|.. .+|. .+...++|.+|++.+|--.+...-....+++|+
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk 390 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK 390 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence 999974 3444 356789999999999755443333333445444
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.18 E-value=2e-08 Score=108.15 Aligned_cols=125 Identities=21% Similarity=0.147 Sum_probs=61.2
Q ss_pred CcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecC
Q 006695 192 NITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLER 271 (635)
Q Consensus 192 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~ 271 (635)
.|...+.+.|.+..+..++.-++.|+.|+|++|++.... .+..++.|++|||+.|.+....--....+. |+.|.+.+
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 345555556666666556666666666666666654432 444555666666665543322111112222 55555555
Q ss_pred CCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc--cccCCCCccEEeccCCCC
Q 006695 272 TAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA--SITQLSQLRSLHLKDCSM 330 (635)
Q Consensus 272 n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~--~l~~l~~L~~L~L~~n~~ 330 (635)
|.++++-. +.++.+|+.||+++|-+..... -+..|..|+.|.|.||++
T Consensus 242 N~l~tL~g-----------ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTTLRG-----------IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHHhhhh-----------HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 55554422 1223455555555554332211 134445555555555543
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.00 E-value=6.8e-08 Score=104.24 Aligned_cols=55 Identities=16% Similarity=0.319 Sum_probs=25.6
Q ss_pred CceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCC
Q 006695 78 NLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNC 133 (635)
Q Consensus 78 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n 133 (635)
.|...+.++|.+..+..++.-++.|+.|+|++|++.. ...+..++.|++|||++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~-v~~Lr~l~~LkhLDlsyN 219 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK-VDNLRRLPKLKHLDLSYN 219 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh-hHHHHhcccccccccccc
Confidence 3444444455554444444445555555555554322 223444444555555444
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=2.4e-06 Score=83.57 Aligned_cols=102 Identities=14% Similarity=0.029 Sum_probs=71.4
Q ss_pred ceEeecCCCCCCCCCCC--C--CCCCceEEEcCCCCCccc---cccCCCCCCCcEEEccCCCCCCCCCCC-CCCCCCCEE
Q 006695 57 LRYLHWHEYPSKALPFD--F--EPENLVKLNLPYSKVVQI---WEGKKRAFKLKYVDIHNSQYLIRMPDL-SETPNLERT 128 (635)
Q Consensus 57 L~~L~l~~~~l~~lp~~--~--~l~~L~~L~L~~n~l~~l---~~~~~~l~~L~~L~Ls~n~~~~~~p~l-~~l~~L~~L 128 (635)
+..|-+.++.+.+.-.. | ..+.+++|||.+|.|+.. ..-+.++|.|+.|+|+.|++...+..+ ..+.+|+.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 33455566655544332 2 467899999999998853 333588999999999999877655544 356799999
Q ss_pred eecCCCCC-cccCccccCCCCCCEEeecCCC
Q 006695 129 NLKNCINL-TCVPSSVQNFNHLSMLCFEGCK 158 (635)
Q Consensus 129 ~L~~n~~l-~~~~~~i~~l~~L~~L~L~~~~ 158 (635)
.|.|.... +.....+..++.++.|.++.|+
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 99876332 2334456788888888888863
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.84 E-value=1.2e-06 Score=89.44 Aligned_cols=246 Identities=18% Similarity=0.252 Sum_probs=144.1
Q ss_pred CCCcEEEccCCCCCCCCC--C-CCCCCCCCEEeecCCCCCccc--CccccCCCCCCEEeecCCCCCCccCCC---CCCCC
Q 006695 100 FKLKYVDIHNSQYLIRMP--D-LSETPNLERTNLKNCINLTCV--PSSVQNFNHLSMLCFEGCKSLRSFPSN---LHFMS 171 (635)
Q Consensus 100 ~~L~~L~Ls~n~~~~~~p--~-l~~l~~L~~L~L~~n~~l~~~--~~~i~~l~~L~~L~L~~~~~l~~lp~~---~~l~~ 171 (635)
..|+.|.+.+++-...-+ . ...+||++.|.+.+|..++.. -..-..+++|++|++..|..++...-. -.+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 357778888776554433 1 456788888888888644431 111245677888888877766643211 16777
Q ss_pred CcEEecCCCCCCCcc-----CcccCCcceEEeccccccc---cCcccccCCCccEEEeecccccccch--hcccCCCCCc
Q 006695 172 PIKIDFSSCFNLTEF-----PQISGNITDLILSETAIQE---VPSSIECLTNLEKLYINRCMRLKRLS--TSICKLKSLH 241 (635)
Q Consensus 172 L~~L~l~~c~~l~~~-----p~~~~~L~~L~L~~n~i~~---lp~~~~~l~~L~~L~L~~n~~~~~lp--~~~~~l~~L~ 241 (635)
|+.+++++|..++.- ...-.+++.+.+.|+.=.+ +-..-+.+.-+.++++..|....... ..-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 888888888766541 1111234455444432111 11112344556667777775544332 1123477888
Q ss_pred EEecCCCCCCCcchh--hhcCCCCCCEEEecCCC-ccccCchhcccccchhhccCCCCccEEEcCCCCCC---ccccccc
Q 006695 242 VLVLDDCSKLERFPE--ILEKMESVKCISLERTA-ITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSE---SLPASIT 315 (635)
Q Consensus 242 ~L~Ls~n~~~~~~~~--~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~---~lp~~l~ 315 (635)
.|+.++|...+..+- --.+..+|+.|.+++++ ++..- +..+-.+.+.|+.+++.++... ++-.--.
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~--------ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~ 369 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG--------FTMLGRNCPHLERLDLEECGLITDGTLASLSR 369 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh--------hhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence 888888877554332 23457888888888875 22211 1122345678888888888732 2332235
Q ss_pred CCCCccEEeccCCCCCCcC--------CCCCCccceeccccccccc
Q 006695 316 QLSQLRSLHLKDCSMLSSL--------PELPQSLELLDAENCKQLQ 353 (635)
Q Consensus 316 ~l~~L~~L~L~~n~~l~~l--------p~l~~sL~~L~l~~c~~l~ 353 (635)
+++.|+.|.+++|.....- ......|..+.+.+|+.++
T Consensus 370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~ 415 (483)
T KOG4341|consen 370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT 415 (483)
T ss_pred CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence 7788888888888776543 1234567777788877653
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.72 E-value=1.2e-06 Score=89.42 Aligned_cols=270 Identities=17% Similarity=0.220 Sum_probs=172.0
Q ss_pred CCceEEEcCCCCC---ccccccCCCCCCCcEEEccCCCCCCCCC--CC-CCCCCCCEEeecCCCCCcccC--ccccCCCC
Q 006695 77 ENLVKLNLPYSKV---VQIWEGKKRAFKLKYVDIHNSQYLIRMP--DL-SETPNLERTNLKNCINLTCVP--SSVQNFNH 148 (635)
Q Consensus 77 ~~L~~L~L~~n~l---~~l~~~~~~l~~L~~L~Ls~n~~~~~~p--~l-~~l~~L~~L~L~~n~~l~~~~--~~i~~l~~ 148 (635)
..|+.|.++++.= ..+-....++++++.|.+.++..+++.. .+ ..+++|+.|+|..|..++... .-...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4577888877643 2343445788899999999887554432 22 357889999999887665432 12456789
Q ss_pred CCEEeecCCCCCCcc--CCC-CCCCCCcEEecCCCCCCCccC-----cccCCcceEEeccc-cccccCc--ccccCCCcc
Q 006695 149 LSMLCFEGCKSLRSF--PSN-LHFMSPIKIDFSSCFNLTEFP-----QISGNITDLILSET-AIQEVPS--SIECLTNLE 217 (635)
Q Consensus 149 L~~L~L~~~~~l~~l--p~~-~~l~~L~~L~l~~c~~l~~~p-----~~~~~L~~L~L~~n-~i~~lp~--~~~~l~~L~ 217 (635)
|++|+++.|..+..- ... -++..++.+.++||..+..-. .....+.++++..+ .++...- .-..+..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 999999998766541 111 156667777777886554211 11133556665554 2332221 124578899
Q ss_pred EEEeecccccccch-hc-ccCCCCCcEEecCCCCCCCcch--hhhcCCCCCCEEEecCCCccccCchhcccccchhhccC
Q 006695 218 KLYINRCMRLKRLS-TS-ICKLKSLHVLVLDDCSKLERFP--EILEKMESVKCISLERTAITELPSSFANLEGLKDLYIG 293 (635)
Q Consensus 218 ~L~L~~n~~~~~lp-~~-~~~l~~L~~L~Ls~n~~~~~~~--~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~ 293 (635)
.|+.++|...+..+ .. ..+..+|+.|.+++|...+..- ..-.+.+.|+.+++.++....-- . |..+..+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-t------L~sls~~ 370 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG-T------LASLSRN 370 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh-h------HhhhccC
Confidence 99999987755433 22 3457899999999998755322 12245788999999887654211 1 2234467
Q ss_pred CCCccEEEcCCCCC-C-----cccccccCCCCccEEeccCCCCCCcCCC----CCCccceeccccccccc
Q 006695 294 GSSLRQLNLSRNDS-E-----SLPASITQLSQLRSLHLKDCSMLSSLPE----LPQSLELLDAENCKQLQ 353 (635)
Q Consensus 294 ~~~L~~L~Ls~n~~-~-----~lp~~l~~l~~L~~L~L~~n~~l~~lp~----l~~sL~~L~l~~c~~l~ 353 (635)
++.|+.|.|++|.. + .+..+-..+..|..|.|++|+.+..--- .=++|+.+++.+|....
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 79999999998872 2 2233446778899999999988653211 12467777777776543
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.65 E-value=5.5e-05 Score=53.28 Aligned_cols=35 Identities=31% Similarity=0.607 Sum_probs=19.7
Q ss_pred CccEEEcCCCCCCcccccccCCCCccEEeccCCCC
Q 006695 296 SLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSM 330 (635)
Q Consensus 296 ~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~ 330 (635)
+|++|++++|+++.+|..+++|++|+.|++++|++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 45566666666666655566666666666666543
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.65 E-value=3.5e-05 Score=54.29 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=25.5
Q ss_pred CCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCC
Q 006695 77 ENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYL 113 (635)
Q Consensus 77 ~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~ 113 (635)
++|++|++++|+|+.+|..+++|++|+.|++++|++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 3677777777777777766777777777777777643
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.47 E-value=0.00023 Score=66.42 Aligned_cols=103 Identities=20% Similarity=0.247 Sum_probs=54.9
Q ss_pred CccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCC
Q 006695 215 NLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGG 294 (635)
Q Consensus 215 ~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~ 294 (635)
+...+||++|.+... ..|..++.|.+|.+.+|.++..-|..-..+++|..|.+.+|+|.++-+- . -...+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~-------pLa~~ 112 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-D-------PLASC 112 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-c-------hhccC
Confidence 445555655554321 1244556666666666666655555555556666666666666644321 0 01344
Q ss_pred CCccEEEcCCCCCCcccc----cccCCCCccEEeccC
Q 006695 295 SSLRQLNLSRNDSESLPA----SITQLSQLRSLHLKD 327 (635)
Q Consensus 295 ~~L~~L~Ls~n~~~~lp~----~l~~l~~L~~L~L~~ 327 (635)
+.|++|.+-+|..+.-+. .+..+++|+.||..+
T Consensus 113 p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 113 PKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 566666666666554432 145556666666554
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.45 E-value=0.00026 Score=65.98 Aligned_cols=107 Identities=16% Similarity=0.055 Sum_probs=62.3
Q ss_pred ccCCCccceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccC-CCCCCCcEEEccCCCCC--CCCCCCCCCCCCC
Q 006695 50 LEYLPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGK-KRAFKLKYVDIHNSQYL--IRMPDLSETPNLE 126 (635)
Q Consensus 50 l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~-~~l~~L~~L~Ls~n~~~--~~~p~l~~l~~L~ 126 (635)
+....++...+++++|.+..++.--.+++|.+|.+.+|+|+.+...+ ..+++|+.|.|.+|.+. .++..+..+|.|+
T Consensus 37 lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 37 LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred ccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 44444456666777777666655446677777777777777765555 33556777777777643 2233456667777
Q ss_pred EEeecCCCCCcccC---ccccCCCCCCEEeecC
Q 006695 127 RTNLKNCINLTCVP---SSVQNFNHLSMLCFEG 156 (635)
Q Consensus 127 ~L~L~~n~~l~~~~---~~i~~l~~L~~L~L~~ 156 (635)
+|.+-+|+....-. -.+..+++|+.||..+
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 77776664332211 1244555555555543
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.45 E-value=4e-05 Score=86.92 Aligned_cols=107 Identities=20% Similarity=0.128 Sum_probs=71.1
Q ss_pred CCCCCcEEecCCCCC----CCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccc-cchhcccCCCCCcE
Q 006695 168 HFMSPIKIDFSSCFN----LTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLK-RLSTSICKLKSLHV 242 (635)
Q Consensus 168 ~l~~L~~L~l~~c~~----l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~-~lp~~~~~l~~L~~ 242 (635)
.+|+|+.|.+++-.. ...+-..++||..||+++++++.+ ..++++++|+.|.+.+=.+.. ..-..+.+|++|+.
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 456666666655322 223345678899999999999888 678899999999888755443 12234667889999
Q ss_pred EecCCCCCCCcc------hhhhcCCCCCCEEEecCCCcc
Q 006695 243 LVLDDCSKLERF------PEILEKMESVKCISLERTAIT 275 (635)
Q Consensus 243 L~Ls~n~~~~~~------~~~l~~l~~L~~L~L~~n~l~ 275 (635)
||+|.-...... -+.-..+|.|+.||.+++.+.
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 998875544321 122334777777777776655
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.42 E-value=5.6e-05 Score=74.22 Aligned_cols=186 Identities=15% Similarity=0.150 Sum_probs=93.6
Q ss_pred CCCCCEEeecCCCCCc--ccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEec
Q 006695 122 TPNLERTNLKNCINLT--CVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILS 199 (635)
Q Consensus 122 l~~L~~L~L~~n~~l~--~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~ 199 (635)
++.++.|+|.+|.... ++...+.+++.|+.|+++.|.... -++.+|....+|+.|.|.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s--------------------~I~~lp~p~~nl~~lVLN 129 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS--------------------DIKSLPLPLKNLRVLVLN 129 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC--------------------ccccCcccccceEEEEEc
Confidence 3445555555553221 223334556666666665543221 222333333455555555
Q ss_pred ccccc--ccCcccccCCCccEEEeecccccccc--hhcccC-CCCCcEEecCCCCCCCc--chhhhcCCCCCCEEEecCC
Q 006695 200 ETAIQ--EVPSSIECLTNLEKLYINRCMRLKRL--STSICK-LKSLHVLVLDDCSKLER--FPEILEKMESVKCISLERT 272 (635)
Q Consensus 200 ~n~i~--~lp~~~~~l~~L~~L~L~~n~~~~~l--p~~~~~-l~~L~~L~Ls~n~~~~~--~~~~l~~l~~L~~L~L~~n 272 (635)
++.+. ...+.+..++.++.|.++.|...... ...... -+.+++|...+|..... .-..-.-++++..+-+..|
T Consensus 130 gT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~ 209 (418)
T KOG2982|consen 130 GTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEG 209 (418)
T ss_pred CCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecC
Confidence 55443 33344566777777777776432111 011111 12344444444432110 0011123456666677777
Q ss_pred CccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc--cccCCCCccEEeccCCCCCCcCC
Q 006695 273 AITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA--SITQLSQLRSLHLKDCSMLSSLP 335 (635)
Q Consensus 273 ~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~--~l~~l~~L~~L~L~~n~~l~~lp 335 (635)
.+.+....- -+..++.+--|+|+.|++.++.+ .+.+++.|..|.++++++...+.
T Consensus 210 PlK~~s~ek--------~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 210 PLKTESSEK--------GSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred cccchhhcc--------cCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 666443211 11234566678888888777653 46778888888888877766553
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.35 E-value=2.4e-05 Score=68.23 Aligned_cols=65 Identities=26% Similarity=0.400 Sum_probs=35.2
Q ss_pred cCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCC
Q 006695 259 EKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLS 332 (635)
Q Consensus 259 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~ 332 (635)
.....|+..+|++|.+..+|..+. ...+.++.|+|++|.+..+|..+..++.|+.|+++.|++..
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft---------~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFT---------IKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNA 114 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHh---------hccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcccc
Confidence 334445555555555555554332 22345556666666666666556666666666666555443
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.30 E-value=9.5e-06 Score=70.70 Aligned_cols=77 Identities=13% Similarity=0.109 Sum_probs=54.1
Q ss_pred ceEeecCCCCCCCCCCCC--CCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCC
Q 006695 57 LRYLHWHEYPSKALPFDF--EPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNC 133 (635)
Q Consensus 57 L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n 133 (635)
|+..++++|.++++|..| ..+.+++|+|++|.|.++|+.+..++.|+.|+++.|++.....-+..+.+|-.|+..+|
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence 666677777777777766 45577777777777777777777777777777777776555444555667777776665
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.21 E-value=0.00025 Score=68.86 Aligned_cols=37 Identities=22% Similarity=0.417 Sum_probs=17.8
Q ss_pred CCCCCCcEEEccCCCCCCCCCC-----CCCCCCCCEEeecCC
Q 006695 97 KRAFKLKYVDIHNSQYLIRMPD-----LSETPNLERTNLKNC 133 (635)
Q Consensus 97 ~~l~~L~~L~Ls~n~~~~~~p~-----l~~l~~L~~L~L~~n 133 (635)
.++++|+..+||+|.+....|. ++..++|++|.|++|
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence 4445555555555554433331 344455555555544
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.75 E-value=0.00079 Score=76.52 Aligned_cols=86 Identities=16% Similarity=0.207 Sum_probs=45.6
Q ss_pred cccCCcceEEeccccccc--cCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCC-cchhhhcCCCCC
Q 006695 188 QISGNITDLILSETAIQE--VPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLE-RFPEILEKMESV 264 (635)
Q Consensus 188 ~~~~~L~~L~L~~n~i~~--lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~-~~~~~l~~l~~L 264 (635)
..+|+|+.|.+.+-.+.. +-.-..++++|..||++++++... .+++.+++|+.|.+.+-.+.. .--..+.++++|
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL 222 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence 344666666666654432 222245566666666666655433 445566666666665533322 112244556666
Q ss_pred CEEEecCCCcc
Q 006695 265 KCISLERTAIT 275 (635)
Q Consensus 265 ~~L~L~~n~l~ 275 (635)
+.||+|.....
T Consensus 223 ~vLDIS~~~~~ 233 (699)
T KOG3665|consen 223 RVLDISRDKNN 233 (699)
T ss_pred Ceeeccccccc
Confidence 66666655444
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.66 E-value=0.00081 Score=65.38 Aligned_cols=59 Identities=32% Similarity=0.429 Sum_probs=35.9
Q ss_pred CCccEEEcCCCCCCcccc--cccCCCCccEEeccCCCCCCcCC------CCCCccceeccccccccc
Q 006695 295 SSLRQLNLSRNDSESLPA--SITQLSQLRSLHLKDCSMLSSLP------ELPQSLELLDAENCKQLQ 353 (635)
Q Consensus 295 ~~L~~L~Ls~n~~~~lp~--~l~~l~~L~~L~L~~n~~l~~lp------~l~~sL~~L~l~~c~~l~ 353 (635)
++|++|++++|++..+.. .+..+.+|..|++.+|.-.+.-- .++++|++||-.....-+
T Consensus 91 P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~E 157 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEE 157 (260)
T ss_pred CceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCcc
Confidence 555555555555433211 35667778888888887766211 256888888877665444
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.44 E-value=0.00085 Score=65.31 Aligned_cols=34 Identities=15% Similarity=0.255 Sum_probs=17.6
Q ss_pred CCCceEEEcCCCCCc-----cccccCCCCCCCcEEEccC
Q 006695 76 PENLVKLNLPYSKVV-----QIWEGKKRAFKLKYVDIHN 109 (635)
Q Consensus 76 l~~L~~L~L~~n~l~-----~l~~~~~~l~~L~~L~Ls~ 109 (635)
+..+++++|++|.|. .+...+.+-.+|+..++++
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd 67 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD 67 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence 345666666666554 2233344455555555554
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.03 E-value=0.0033 Score=61.24 Aligned_cols=100 Identities=20% Similarity=0.102 Sum_probs=52.8
Q ss_pred ceEeecCCCCCCCCCCCCCCCCceEEEcCCC--CCc-cccccCCCCCCCcEEEccCCCCC--CCCCCCCCCCCCCEEeec
Q 006695 57 LRYLHWHEYPSKALPFDFEPENLVKLNLPYS--KVV-QIWEGKKRAFKLKYVDIHNSQYL--IRMPDLSETPNLERTNLK 131 (635)
Q Consensus 57 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n--~l~-~l~~~~~~l~~L~~L~Ls~n~~~--~~~p~l~~l~~L~~L~L~ 131 (635)
|+.|...+..+.++-..-.+++|+.|.++.| ++. .++.-...+++|++|+|++|++. ..++.+..+.+|..|++.
T Consensus 45 le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~ 124 (260)
T KOG2739|consen 45 LELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLF 124 (260)
T ss_pred hhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcc
Confidence 5555555555444433335667777777776 332 33333445577777777777643 223345566666677776
Q ss_pred CCCCCccc---CccccCCCCCCEEeecC
Q 006695 132 NCINLTCV---PSSVQNFNHLSMLCFEG 156 (635)
Q Consensus 132 ~n~~l~~~---~~~i~~l~~L~~L~L~~ 156 (635)
+|..+..- ...|.-+++|++|+-.+
T Consensus 125 n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 125 NCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred cCCccccccHHHHHHHHhhhhccccccc
Confidence 66444311 11244455666655443
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.00058 Score=66.65 Aligned_cols=96 Identities=27% Similarity=0.336 Sum_probs=67.1
Q ss_pred CCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc--cc
Q 006695 237 LKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA--SI 314 (635)
Q Consensus 237 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~--~l 314 (635)
+.+.+.|+..||.+... .....|+.|+.|.|+-|+|+.+.. +..++.|++|+|..|.|.++.. .+
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p-----------l~rCtrLkElYLRkN~I~sldEL~YL 84 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP-----------LQRCTRLKELYLRKNCIESLDELEYL 84 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh-----------HHHHHHHHHHHHHhcccccHHHHHHH
Confidence 45566677777765442 345678888888888888887643 2445778888888888777754 36
Q ss_pred cCCCCccEEeccCCCCCCcCCC--------CCCccceec
Q 006695 315 TQLSQLRSLHLKDCSMLSSLPE--------LPQSLELLD 345 (635)
Q Consensus 315 ~~l~~L~~L~L~~n~~l~~lp~--------l~~sL~~L~ 345 (635)
.++++|+.|.|..|+-.+.-+. .+|+|+.||
T Consensus 85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7888888888888887766554 356777665
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.87 E-value=0.033 Score=49.05 Aligned_cols=106 Identities=18% Similarity=0.277 Sum_probs=47.4
Q ss_pred ccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCceEEEcCCCCC
Q 006695 12 HLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENLVKLNLPYSKV 89 (635)
Q Consensus 12 ~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l 89 (635)
.+...+|.++++|+.+.+.. .+. .+.........+|+.+.+.++ +..++.. | ...+|+.+.+.. .+
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~---------~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~ 69 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIK---------KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NL 69 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T-----------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT
T ss_pred EECHHHHhCCCCCCEEEECC-Cee---------EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cc
Confidence 46778899999999998864 233 343333333334666666553 5555554 3 444666666654 44
Q ss_pred ccccc-cCCCCCCCcEEEccCCCCCCCCC--CCCCCCCCCEEeecC
Q 006695 90 VQIWE-GKKRAFKLKYVDIHNSQYLIRMP--DLSETPNLERTNLKN 132 (635)
Q Consensus 90 ~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~ 132 (635)
..++. .+..+++|+.+++..+ ...++ .+.+. +|+.+.+..
T Consensus 70 ~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 70 KSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 44433 2344666666666543 22222 24554 555555543
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.80 E-value=0.0043 Score=68.24 Aligned_cols=34 Identities=32% Similarity=0.588 Sum_probs=19.7
Q ss_pred ccEEeccCCCCCCcCCC--C---CCccceeccccccccc
Q 006695 320 LRSLHLKDCSMLSSLPE--L---PQSLELLDAENCKQLQ 353 (635)
Q Consensus 320 L~~L~L~~n~~l~~lp~--l---~~sL~~L~l~~c~~l~ 353 (635)
++.|+++.|.....--- . -..++.+++.+|+...
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 67777777765443211 1 3456667777776554
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.00045 Score=67.41 Aligned_cols=79 Identities=15% Similarity=0.106 Sum_probs=39.3
Q ss_pred ceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCC---CCCCCCCCCEEeecCC
Q 006695 57 LRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMP---DLSETPNLERTNLKNC 133 (635)
Q Consensus 57 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p---~l~~l~~L~~L~L~~n 133 (635)
.+.|+.-|+.+..+.-.-.++.|++|.|+-|+|+.+ +.+..+++|+.|.|..|.+. .+. -+.++|+|+.|.|..|
T Consensus 21 vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred hhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccC
Confidence 334444444444333223455566666666666555 34555566666666655432 111 1455555666666555
Q ss_pred CCCc
Q 006695 134 INLT 137 (635)
Q Consensus 134 ~~l~ 137 (635)
+-.+
T Consensus 99 PCc~ 102 (388)
T KOG2123|consen 99 PCCG 102 (388)
T ss_pred Cccc
Confidence 4333
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.13 E-value=0.062 Score=47.31 Aligned_cols=14 Identities=14% Similarity=0.202 Sum_probs=5.3
Q ss_pred cccCCCccEEEeec
Q 006695 210 IECLTNLEKLYINR 223 (635)
Q Consensus 210 ~~~l~~L~~L~L~~ 223 (635)
|.++++|+.+.+.+
T Consensus 31 F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 31 FSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT-SEEEESS
T ss_pred cccccccccccccc
Confidence 44444444444443
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.11 E-value=0.0089 Score=35.10 Aligned_cols=18 Identities=44% Similarity=0.645 Sum_probs=9.0
Q ss_pred ccEEEcCCCCCCcccccc
Q 006695 297 LRQLNLSRNDSESLPASI 314 (635)
Q Consensus 297 L~~L~Ls~n~~~~lp~~l 314 (635)
|++|||++|+++.+|.++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 445555555555555443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.58 E-value=0.019 Score=33.65 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=12.3
Q ss_pred CcceEEeccccccccCccccc
Q 006695 192 NITDLILSETAIQEVPSSIEC 212 (635)
Q Consensus 192 ~L~~L~L~~n~i~~lp~~~~~ 212 (635)
+|++|+|++|.|+.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655443
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.48 E-value=0.051 Score=29.62 Aligned_cols=14 Identities=57% Similarity=0.688 Sum_probs=4.6
Q ss_pred ccEEEcCCCCCCcc
Q 006695 297 LRQLNLSRNDSESL 310 (635)
Q Consensus 297 L~~L~Ls~n~~~~l 310 (635)
|+.|+|++|+++++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 34444444444333
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.24 E-value=0.025 Score=62.12 Aligned_cols=111 Identities=24% Similarity=0.348 Sum_probs=57.3
Q ss_pred CCCccEEEeeccccccc--chhcccCCCCCcEEecCCC-CCCCcch----hhhcCCCCCCEEEecCCC-ccccCchhccc
Q 006695 213 LTNLEKLYINRCMRLKR--LSTSICKLKSLHVLVLDDC-SKLERFP----EILEKMESVKCISLERTA-ITELPSSFANL 284 (635)
Q Consensus 213 l~~L~~L~L~~n~~~~~--lp~~~~~l~~L~~L~Ls~n-~~~~~~~----~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l 284 (635)
++.|+.|.+.+|..... +-......+.|+.|++++| ......+ .....+.+|+.|+++++. +++.-
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~------ 260 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG------ 260 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh------
Confidence 56666666666655443 3344455666777777662 2222111 233345666666666655 33221
Q ss_pred ccchhhccCCCCccEEEcCCCC-CC--cccccccCCCCccEEeccCCCCC
Q 006695 285 EGLKDLYIGGSSLRQLNLSRND-SE--SLPASITQLSQLRSLHLKDCSML 331 (635)
Q Consensus 285 ~~L~~l~~~~~~L~~L~Ls~n~-~~--~lp~~l~~l~~L~~L~L~~n~~l 331 (635)
+..+...+++|+.|.+.+|. ++ .+-.....+++|++|+|++|..+
T Consensus 261 --l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 261 --LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred --HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 11122235666666666555 32 22223355666777777766655
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.20 E-value=0.065 Score=29.22 Aligned_cols=17 Identities=24% Similarity=0.573 Sum_probs=9.3
Q ss_pred CCCCEEEecCCCccccC
Q 006695 262 ESVKCISLERTAITELP 278 (635)
Q Consensus 262 ~~L~~L~L~~n~l~~lp 278 (635)
++|+.|++++|+++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 35777777777777665
No 75
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=90.72 E-value=0.18 Score=28.61 Aligned_cols=20 Identities=65% Similarity=1.230 Sum_probs=17.7
Q ss_pred CceEEEcCCCCCccccccCC
Q 006695 78 NLVKLNLPYSKVVQIWEGKK 97 (635)
Q Consensus 78 ~L~~L~L~~n~l~~l~~~~~ 97 (635)
+|++|+|++++++++|++.+
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 58999999999999998763
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.86 E-value=0.011 Score=56.53 Aligned_cols=78 Identities=14% Similarity=0.121 Sum_probs=36.2
Q ss_pred ceEeecCCCCCCCCCCCC-CCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCC
Q 006695 57 LRYLHWHEYPSKALPFDF-EPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCI 134 (635)
Q Consensus 57 L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~ 134 (635)
.+.|+++.+.+..+-..| -++.|+.|+++.|.+..+|+..+.+..++.+++..|......-.++..+.++++++.++.
T Consensus 44 ~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 44 VTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred eeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCc
Confidence 333444444443333333 234455555555555555555555555555555444432222245555555555555543
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.24 E-value=0.47 Score=28.85 Aligned_cols=19 Identities=47% Similarity=0.732 Sum_probs=12.1
Q ss_pred CCccEEEcCCCCCCccccc
Q 006695 295 SSLRQLNLSRNDSESLPAS 313 (635)
Q Consensus 295 ~~L~~L~Ls~n~~~~lp~~ 313 (635)
++|+.|+|++|+++.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666654
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.24 E-value=0.47 Score=28.85 Aligned_cols=19 Identities=47% Similarity=0.732 Sum_probs=12.1
Q ss_pred CCccEEEcCCCCCCccccc
Q 006695 295 SSLRQLNLSRNDSESLPAS 313 (635)
Q Consensus 295 ~~L~~L~Ls~n~~~~lp~~ 313 (635)
++|+.|+|++|+++.+|.+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4566666666666666654
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.91 E-value=0.54 Score=28.56 Aligned_cols=21 Identities=14% Similarity=0.436 Sum_probs=17.3
Q ss_pred CCCCCEEEecCCCccccCchh
Q 006695 261 MESVKCISLERTAITELPSSF 281 (635)
Q Consensus 261 l~~L~~L~L~~n~l~~lp~~~ 281 (635)
+++|+.|+|++|.|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467899999999999998753
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.91 E-value=0.54 Score=28.56 Aligned_cols=21 Identities=14% Similarity=0.436 Sum_probs=17.3
Q ss_pred CCCCCEEEecCCCccccCchh
Q 006695 261 MESVKCISLERTAITELPSSF 281 (635)
Q Consensus 261 l~~L~~L~L~~n~l~~lp~~~ 281 (635)
+++|+.|+|++|.|+.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467899999999999998753
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=84.28 E-value=0.021 Score=62.25 Aligned_cols=168 Identities=21% Similarity=0.206 Sum_probs=73.9
Q ss_pred cccCCCccEEEeeccccccc----chhcccCC-CCCcEEecCCCCCCCc----chhhhcCCCCCCEEEecCCCccccCch
Q 006695 210 IECLTNLEKLYINRCMRLKR----LSTSICKL-KSLHVLVLDDCSKLER----FPEILEKMESVKCISLERTAITELPSS 280 (635)
Q Consensus 210 ~~~l~~L~~L~L~~n~~~~~----lp~~~~~l-~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~lp~~ 280 (635)
+.....|+.|++++|.+... +-..+... ..|++|++..|.+... +...+...+.++.++++.|.+...-.
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~- 189 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL- 189 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh-
Confidence 44445555555555554321 11112222 3445555555554432 33344445556666666555531100
Q ss_pred hcccccchhhccCCCCccEEEcCCCCCCcc-----cccccCCCC-ccEEeccCCCCCCcCC----C---CC-Cccceecc
Q 006695 281 FANLEGLKDLYIGGSSLRQLNLSRNDSESL-----PASITQLSQ-LRSLHLKDCSMLSSLP----E---LP-QSLELLDA 346 (635)
Q Consensus 281 ~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~l-----p~~l~~l~~-L~~L~L~~n~~l~~lp----~---l~-~sL~~L~l 346 (635)
..-.+.++..+....++++|++++|.++.- -..+...+. +..|++..|..-...- + .+ ..++.+++
T Consensus 190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l 269 (478)
T KOG4308|consen 190 LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDL 269 (478)
T ss_pred HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhh
Confidence 000001111122345566666666654421 112333444 5556666554432210 0 11 35566666
Q ss_pred cccccccc----cCccccCccccchhhhhhhhhccc
Q 006695 347 ENCKQLQF----IPEILSGLEEVDASVLEKATFLNS 378 (635)
Q Consensus 347 ~~c~~l~~----~~~~~~~L~~L~~l~L~~n~~~~~ 378 (635)
+.|.+... +...+...+.++.+.+..|++...
T Consensus 270 ~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 270 SRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred hcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 66655432 233445555666666666665544
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=80.29 E-value=0.037 Score=60.45 Aligned_cols=156 Identities=24% Similarity=0.273 Sum_probs=89.2
Q ss_pred CcceEEeccccccc-----cCcccccC-CCccEEEeeccccccc----chhcccCCCCCcEEecCCCCCCC----cchhh
Q 006695 192 NITDLILSETAIQE-----VPSSIECL-TNLEKLYINRCMRLKR----LSTSICKLKSLHVLVLDDCSKLE----RFPEI 257 (635)
Q Consensus 192 ~L~~L~L~~n~i~~-----lp~~~~~l-~~L~~L~L~~n~~~~~----lp~~~~~l~~L~~L~Ls~n~~~~----~~~~~ 257 (635)
.|..|++++|.+.. +-..+... ..|++|++..|.+... +...+.....++.++++.|.+.. .++..
T Consensus 116 ~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~ 195 (478)
T KOG4308|consen 116 TLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQA 195 (478)
T ss_pred cHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhh
Confidence 45555555555541 11112222 4556666666665432 34445556777777777776642 12223
Q ss_pred hc----CCCCCCEEEecCCCccccCchhcccccchhhccCCCC-ccEEEcCCCCCCc-----ccccccCC-CCccEEecc
Q 006695 258 LE----KMESVKCISLERTAITELPSSFANLEGLKDLYIGGSS-LRQLNLSRNDSES-----LPASITQL-SQLRSLHLK 326 (635)
Q Consensus 258 l~----~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~-L~~L~Ls~n~~~~-----lp~~l~~l-~~L~~L~L~ 326 (635)
+. ...++++|++.+|.++.. .+..+...+...++ +..|++..|.+.. +...+..+ ..+++++++
T Consensus 196 l~~~~~~~~~le~L~L~~~~~t~~-----~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~ 270 (478)
T KOG4308|consen 196 LESAASPLSSLETLKLSRCGVTSS-----SCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLS 270 (478)
T ss_pred hhhhhcccccHHHHhhhhcCcChH-----HHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhh
Confidence 33 467788888888877721 11222233344444 6678888887653 33445555 677888888
Q ss_pred CCCCCCcCCC-------CCCccceecccccccc
Q 006695 327 DCSMLSSLPE-------LPQSLELLDAENCKQL 352 (635)
Q Consensus 327 ~n~~l~~lp~-------l~~sL~~L~l~~c~~l 352 (635)
.|.+...-.. ..+.++.|.+.+|+..
T Consensus 271 ~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 271 RNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred cCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 8887754332 1247888888887654
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.68 E-value=0.56 Score=44.33 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=51.5
Q ss_pred CCccEEEcCCCCCCccc-ccccCCCCccEEeccCCCCCC-----cCCCCCCccceecccccccccccC-ccccCccccch
Q 006695 295 SSLRQLNLSRNDSESLP-ASITQLSQLRSLHLKDCSMLS-----SLPELPQSLELLDAENCKQLQFIP-EILSGLEEVDA 367 (635)
Q Consensus 295 ~~L~~L~Ls~n~~~~lp-~~l~~l~~L~~L~L~~n~~l~-----~lp~l~~sL~~L~l~~c~~l~~~~-~~~~~L~~L~~ 367 (635)
..++.+|-++..+...- ..+.+++.++.|.+.+|+... .+-...++|+.|++++|+.++.-. ..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 45677777776654332 246778888899999988754 344567899999999998876432 23445556655
Q ss_pred hhhh
Q 006695 368 SVLE 371 (635)
Q Consensus 368 l~L~ 371 (635)
|.+.
T Consensus 181 L~l~ 184 (221)
T KOG3864|consen 181 LHLY 184 (221)
T ss_pred HHhc
Confidence 5543
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.25 E-value=0.71 Score=43.67 Aligned_cols=33 Identities=39% Similarity=0.458 Sum_probs=17.8
Q ss_pred CCccEEEcCCCC-CCcc-cccccCCCCccEEeccC
Q 006695 295 SSLRQLNLSRND-SESL-PASITQLSQLRSLHLKD 327 (635)
Q Consensus 295 ~~L~~L~Ls~n~-~~~l-p~~l~~l~~L~~L~L~~ 327 (635)
++|+.|+|++|. |++- -.++..+++|+.|.|.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 566666666665 3322 12455566666666654
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.52 E-value=1.7 Score=26.55 Aligned_cols=18 Identities=50% Similarity=0.730 Sum_probs=12.7
Q ss_pred CCccEEEcCCCCCCcccc
Q 006695 295 SSLRQLNLSRNDSESLPA 312 (635)
Q Consensus 295 ~~L~~L~Ls~n~~~~lp~ 312 (635)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 356777777777777774
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.94 E-value=2.6 Score=25.75 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=10.3
Q ss_pred CceEEEcCCCCCccccc
Q 006695 78 NLVKLNLPYSKVVQIWE 94 (635)
Q Consensus 78 ~L~~L~L~~n~l~~l~~ 94 (635)
+|+.|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 55666666666666654
No 87
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=71.11 E-value=0.11 Score=49.95 Aligned_cols=83 Identities=13% Similarity=0.073 Sum_probs=54.9
Q ss_pred CCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEee
Q 006695 75 EPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCF 154 (635)
Q Consensus 75 ~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L 154 (635)
.....+.||++.|++..+-..++.++.|..||++.|++.....|++....++.+++..| .....|.+++..++++.+++
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchhhh
Confidence 34566777777777776666666677777777777664433335666666666666654 55666777777777777777
Q ss_pred cCCC
Q 006695 155 EGCK 158 (635)
Q Consensus 155 ~~~~ 158 (635)
.++.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 6654
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=67.36 E-value=4.3 Score=24.84 Aligned_cols=16 Identities=38% Similarity=0.561 Sum_probs=10.2
Q ss_pred CCceEEEcCCCCCccc
Q 006695 77 ENLVKLNLPYSKVVQI 92 (635)
Q Consensus 77 ~~L~~L~L~~n~l~~l 92 (635)
.+|++|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566667777666544
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=64.63 E-value=3.9 Score=44.47 Aligned_cols=79 Identities=25% Similarity=0.299 Sum_probs=50.7
Q ss_pred cCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCC--CCCcccccc--cCCCCccEEeccCCCCCCcC
Q 006695 259 EKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRN--DSESLPASI--TQLSQLRSLHLKDCSMLSSL 334 (635)
Q Consensus 259 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n--~~~~lp~~l--~~l~~L~~L~L~~n~~l~~l 334 (635)
.+.+.+..+.|++|++..+.. +..+....+.|+.|+|++| .+.+.+ ++ -+...|++|-+.||++.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~-------~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDA-------LSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred cCCcceeeeecccchhhchhh-------hhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccch
Confidence 356677778888888776542 2334455688888888888 333332 22 23346888888888887654
Q ss_pred C----------CCCCccceec
Q 006695 335 P----------ELPQSLELLD 345 (635)
Q Consensus 335 p----------~l~~sL~~L~ 345 (635)
. +.+|.|..||
T Consensus 287 ~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 287 SDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhhHHHHHHHHHhcchheeec
Confidence 3 3567777666
No 90
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=55.66 E-value=4.2 Score=24.01 Aligned_cols=13 Identities=31% Similarity=0.299 Sum_probs=5.2
Q ss_pred CCccEEEeecccc
Q 006695 214 TNLEKLYINRCMR 226 (635)
Q Consensus 214 ~~L~~L~L~~n~~ 226 (635)
++|++|+|++|.+
T Consensus 2 ~~L~~L~l~~n~i 14 (24)
T PF13516_consen 2 PNLETLDLSNNQI 14 (24)
T ss_dssp TT-SEEE-TSSBE
T ss_pred CCCCEEEccCCcC
Confidence 3444555555443
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=49.20 E-value=13 Score=22.48 Aligned_cols=13 Identities=38% Similarity=0.754 Sum_probs=6.0
Q ss_pred CCccEEeccCCCC
Q 006695 318 SQLRSLHLKDCSM 330 (635)
Q Consensus 318 ~~L~~L~L~~n~~ 330 (635)
++|++|+|++|..
T Consensus 2 ~~L~~L~l~~C~~ 14 (26)
T smart00367 2 PNLRELDLSGCTN 14 (26)
T ss_pred CCCCEeCCCCCCC
Confidence 3444444444443
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=45.04 E-value=18 Score=22.39 Aligned_cols=14 Identities=50% Similarity=0.646 Sum_probs=9.1
Q ss_pred CCccEEEcCCCCCC
Q 006695 295 SSLRQLNLSRNDSE 308 (635)
Q Consensus 295 ~~L~~L~Ls~n~~~ 308 (635)
++|++|||++|.++
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777654
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=36.50 E-value=1.2e+02 Score=32.95 Aligned_cols=59 Identities=12% Similarity=-0.026 Sum_probs=32.5
Q ss_pred CCCcEEEccCCCCCCCCCC----CCCCCCCCEEeecCCCCCcc---cCccccCCCCCCEEeecCCC
Q 006695 100 FKLKYVDIHNSQYLIRMPD----LSETPNLERTNLKNCINLTC---VPSSVQNFNHLSMLCFEGCK 158 (635)
Q Consensus 100 ~~L~~L~Ls~n~~~~~~p~----l~~l~~L~~L~L~~n~~l~~---~~~~i~~l~~L~~L~L~~~~ 158 (635)
..+.+++|+.|.....+|. ...-.-++.++.+....... -+-..+.-++|...+++.|.
T Consensus 214 ~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng 279 (553)
T KOG4242|consen 214 LWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNG 279 (553)
T ss_pred ccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCC
Confidence 3577888888887777774 22234456666654322111 12224455667776666543
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.68 E-value=22 Score=39.04 Aligned_cols=15 Identities=33% Similarity=0.651 Sum_probs=11.5
Q ss_pred CCcceeEEEEEEeec
Q 006695 467 RNLIGFALCAVLDYN 481 (635)
Q Consensus 467 ~~~~gf~~c~v~~~~ 481 (635)
.+.+||++..||.-+
T Consensus 444 ~~~l~ftv~G~f~d~ 458 (585)
T KOG3763|consen 444 GNLLGFTVAGVFRDG 458 (585)
T ss_pred cceEEEEEEEEeecC
Confidence 578889888888553
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=28.78 E-value=43 Score=44.02 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=30.1
Q ss_pred ecCCCcccccChhhhcCCCCCcEEEeecCCCC
Q 006695 4 DLSKITSIHLSPQAFANMPNLRFLKFYMPEHN 35 (635)
Q Consensus 4 dLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~ 35 (635)
||++|++..++..+|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 79999999999999999999999999998765
Done!