Query 006695
Match_columns 635
No_of_seqs 774 out of 4093
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 06:29:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006695.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006695hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5E-37 1.7E-41 355.8 19.7 333 47-380 311-721 (768)
2 3t6q_A CD180 antigen; protein- 100.0 6.7E-35 2.3E-39 329.2 33.4 378 1-394 36-486 (606)
3 3rgz_A Protein brassinosteroid 100.0 5.3E-36 1.8E-40 347.1 23.7 366 3-378 205-671 (768)
4 4eco_A Uncharacterized protein 100.0 5.2E-36 1.8E-40 339.7 21.1 389 2-396 85-599 (636)
5 3vq2_A TLR4, TOLL-like recepto 100.0 2.3E-34 7.9E-39 324.8 32.2 372 2-395 36-556 (606)
6 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-34 3.8E-39 323.4 22.9 370 2-395 30-508 (549)
7 4eco_A Uncharacterized protein 100.0 2.1E-34 7.1E-39 326.5 25.1 354 8-379 193-603 (636)
8 3vq2_A TLR4, TOLL-like recepto 100.0 7.3E-34 2.5E-38 320.7 28.8 352 2-378 60-560 (606)
9 4ecn_A Leucine-rich repeat pro 100.0 7.3E-34 2.5E-38 328.7 28.6 389 2-397 327-840 (876)
10 3t6q_A CD180 antigen; protein- 100.0 1.1E-33 3.9E-38 319.1 29.7 391 2-395 61-558 (606)
11 4ecn_A Leucine-rich repeat pro 100.0 3.1E-34 1E-38 331.8 23.8 359 2-398 452-873 (876)
12 2z7x_B TOLL-like receptor 1, v 100.0 2.5E-34 8.7E-39 318.4 17.1 372 2-395 25-479 (520)
13 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-32 3.9E-37 322.4 31.2 368 2-378 28-495 (844)
14 2z63_A TOLL-like receptor 4, v 100.0 4.1E-33 1.4E-37 312.1 25.9 381 2-394 32-528 (570)
15 1ziw_A TOLL-like receptor 3; i 100.0 6E-32 2E-36 309.3 31.3 365 2-375 29-466 (680)
16 2z63_A TOLL-like receptor 4, v 100.0 3.1E-32 1E-36 304.9 26.8 355 2-377 56-532 (570)
17 3j0a_A TOLL-like receptor 5; m 100.0 1E-31 3.6E-36 314.3 27.2 368 1-378 51-519 (844)
18 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.5E-31 8.7E-36 297.3 27.3 355 2-378 56-488 (562)
19 3v47_A TOLL-like receptor 5B a 100.0 4.4E-31 1.5E-35 287.3 28.2 353 3-377 15-409 (455)
20 1ziw_A TOLL-like receptor 3; i 100.0 2.4E-30 8E-35 296.1 34.0 389 2-400 53-599 (680)
21 2z81_A CD282 antigen, TOLL-lik 100.0 3.9E-31 1.3E-35 294.7 25.8 366 3-394 10-483 (549)
22 1o6v_A Internalin A; bacterial 100.0 1.4E-30 4.9E-35 284.3 29.5 338 2-378 50-390 (466)
23 3v47_A TOLL-like receptor 5B a 100.0 7.6E-31 2.6E-35 285.4 25.6 334 53-395 28-406 (455)
24 1jl5_A Outer protein YOPM; leu 100.0 1.2E-30 4E-35 283.5 26.7 349 2-377 15-410 (454)
25 2z7x_B TOLL-like receptor 1, v 100.0 9.4E-32 3.2E-36 297.8 18.0 347 1-378 48-483 (520)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-30 4.7E-35 291.3 26.3 360 2-394 35-483 (562)
27 3bz5_A Internalin-J, INLJ; leu 100.0 6.2E-30 2.1E-34 278.1 29.1 332 2-375 46-386 (457)
28 3o6n_A APL1; leucine-rich repe 100.0 1.1E-29 3.8E-34 270.7 27.7 304 20-351 43-351 (390)
29 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-29 5.2E-34 286.2 27.3 356 2-377 56-581 (635)
30 4fmz_A Internalin; leucine ric 100.0 3.3E-29 1.1E-33 262.6 27.2 304 17-375 39-345 (347)
31 4fmz_A Internalin; leucine ric 100.0 6.7E-29 2.3E-33 260.2 29.1 295 2-350 48-344 (347)
32 2id5_A Lingo-1, leucine rich r 100.0 4E-29 1.4E-33 273.7 28.2 312 25-377 14-334 (477)
33 2id5_A Lingo-1, leucine rich r 100.0 2.3E-29 7.7E-34 275.6 26.1 292 2-331 36-333 (477)
34 3oja_B Anopheles plasmodium-re 100.0 5.6E-29 1.9E-33 280.2 27.8 304 21-352 50-358 (597)
35 1o6v_A Internalin A; bacterial 100.0 1.1E-28 3.7E-33 269.5 29.1 315 2-353 72-389 (466)
36 1jl5_A Outer protein YOPM; leu 100.0 8.7E-28 3E-32 260.9 33.1 315 2-358 75-417 (454)
37 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-28 4.1E-33 267.9 25.9 308 13-376 33-352 (457)
38 3o6n_A APL1; leucine-rich repe 100.0 1.5E-27 5.2E-32 254.2 24.2 298 56-377 46-353 (390)
39 3oja_B Anopheles plasmodium-re 99.9 5.4E-27 1.8E-31 264.0 24.0 299 56-377 52-359 (597)
40 1xku_A Decorin; proteoglycan, 99.9 3.3E-26 1.1E-30 238.1 27.3 277 57-349 33-329 (330)
41 2ft3_A Biglycan; proteoglycan, 99.9 2.6E-26 9E-31 239.1 26.1 279 23-349 34-330 (332)
42 2ft3_A Biglycan; proteoglycan, 99.9 2.2E-26 7.6E-31 239.7 24.2 277 57-374 35-331 (332)
43 1xku_A Decorin; proteoglycan, 99.9 6E-26 2E-30 236.2 27.3 281 77-374 31-330 (330)
44 4g8a_A TOLL-like receptor 4; l 99.9 4.3E-26 1.5E-30 257.9 27.8 333 1-352 79-580 (635)
45 1ogq_A PGIP-2, polygalacturona 99.9 8.6E-27 2.9E-31 240.8 15.2 245 77-352 50-304 (313)
46 1ogq_A PGIP-2, polygalacturona 99.9 4.4E-26 1.5E-30 235.4 14.9 248 100-378 50-306 (313)
47 3g06_A SSPH2 (leucine-rich rep 99.9 4.3E-24 1.5E-28 239.3 28.8 263 22-336 40-302 (622)
48 3g06_A SSPH2 (leucine-rich rep 99.9 7.8E-24 2.7E-28 237.2 27.7 257 55-354 40-299 (622)
49 4fcg_A Uncharacterized protein 99.9 1.5E-24 5.2E-29 225.4 19.5 229 76-328 80-311 (328)
50 1z7x_W Ribonuclease inhibitor; 99.9 3.6E-27 1.2E-31 256.7 -2.7 351 2-377 7-412 (461)
51 4fcg_A Uncharacterized protein 99.9 3.7E-24 1.3E-28 222.4 19.3 206 21-281 80-297 (328)
52 3zyi_A Leucine-rich repeat-con 99.9 3.6E-23 1.2E-27 224.8 25.8 243 56-330 55-302 (452)
53 2z80_A TOLL-like receptor 2, v 99.9 6.1E-24 2.1E-28 223.2 19.1 265 58-352 34-314 (353)
54 3zyj_A Leucine-rich repeat-con 99.9 3.5E-23 1.2E-27 224.1 24.6 220 56-278 44-271 (440)
55 1ozn_A Reticulon 4 receptor; N 99.9 2.6E-23 8.8E-28 211.6 19.7 200 58-278 14-217 (285)
56 3o53_A Protein LRIM1, AGAP0063 99.9 1.5E-24 5.1E-29 224.4 10.3 259 78-377 11-276 (317)
57 1z7x_W Ribonuclease inhibitor; 99.9 1.2E-25 4.3E-30 244.6 1.6 339 2-351 32-439 (461)
58 2z66_A Variable lymphocyte rec 99.9 1.1E-23 3.7E-28 216.6 15.4 274 58-361 10-296 (306)
59 1ozn_A Reticulon 4 receptor; N 99.9 7.1E-23 2.4E-27 208.3 20.7 251 79-361 13-270 (285)
60 2z80_A TOLL-like receptor 2, v 99.9 5.9E-23 2E-27 215.7 19.8 279 20-335 29-318 (353)
61 3zyj_A Leucine-rich repeat-con 99.9 3.5E-22 1.2E-26 216.2 25.4 240 23-275 44-292 (440)
62 2z66_A Variable lymphocyte rec 99.9 4.5E-23 1.5E-27 212.0 17.2 243 25-309 10-262 (306)
63 3zyi_A Leucine-rich repeat-con 99.9 5.2E-22 1.8E-26 215.7 25.1 244 24-308 56-303 (452)
64 3o53_A Protein LRIM1, AGAP0063 99.9 9.3E-24 3.2E-28 218.4 8.2 239 101-378 11-252 (317)
65 1wwl_A Monocyte differentiatio 99.9 2.6E-23 8.8E-28 214.6 7.4 238 56-330 44-308 (312)
66 3oja_A Leucine-rich immune mol 99.9 1.6E-22 5.4E-27 221.6 13.6 213 78-331 35-250 (487)
67 1wwl_A Monocyte differentiatio 99.9 1.6E-23 5.4E-28 216.2 4.4 244 77-376 43-309 (312)
68 3oja_A Leucine-rich immune mol 99.9 4.3E-22 1.5E-26 218.1 13.8 234 97-371 31-270 (487)
69 2z62_A TOLL-like receptor 4, v 99.9 1.1E-20 3.7E-25 191.2 21.6 219 60-333 12-239 (276)
70 1p9a_G Platelet glycoprotein I 99.9 3.6E-20 1.2E-24 188.9 21.6 200 97-330 7-207 (290)
71 2o6q_A Variable lymphocyte rec 99.8 2.3E-19 8E-24 180.8 22.5 111 211-330 106-217 (270)
72 2o6q_A Variable lymphocyte rec 99.8 5E-19 1.7E-23 178.4 22.7 197 57-307 18-217 (270)
73 4ay9_X Follicle-stimulating ho 99.8 1.9E-19 6.4E-24 188.7 19.9 233 58-326 12-254 (350)
74 2z62_A TOLL-like receptor 4, v 99.8 3.4E-19 1.2E-23 180.1 20.9 217 81-350 11-235 (276)
75 3rfs_A Internalin B, repeat mo 99.8 3E-20 1E-24 187.6 12.8 118 234-364 129-247 (272)
76 3rfs_A Internalin B, repeat mo 99.8 6.9E-20 2.4E-24 185.0 15.4 226 57-343 21-247 (272)
77 3ogk_B Coronatine-insensitive 99.8 1.3E-21 4.4E-26 219.8 1.8 350 19-378 109-528 (592)
78 1p9a_G Platelet glycoprotein I 99.8 5.4E-19 1.8E-23 180.1 21.0 195 57-308 12-208 (290)
79 2xwt_C Thyrotropin receptor; s 99.8 1.5E-19 5.2E-24 178.7 16.4 89 67-157 23-115 (239)
80 2xwt_C Thyrotropin receptor; s 99.8 1.9E-19 6.6E-24 178.0 13.5 205 181-397 21-239 (239)
81 2ast_B S-phase kinase-associat 99.8 3.8E-20 1.3E-24 192.5 7.7 193 78-272 48-257 (336)
82 1h6u_A Internalin H; cell adhe 99.8 4.3E-19 1.5E-23 182.5 15.5 118 196-330 112-229 (308)
83 4ay9_X Follicle-stimulating ho 99.8 8.6E-19 2.9E-23 183.6 17.7 237 80-373 12-256 (350)
84 4glp_A Monocyte differentiatio 99.8 3.2E-19 1.1E-23 183.6 13.9 220 77-330 64-306 (310)
85 1h6u_A Internalin H; cell adhe 99.8 1.9E-18 6.4E-23 177.7 17.8 107 192-314 130-236 (308)
86 3ogk_B Coronatine-insensitive 99.8 1.4E-20 4.6E-25 211.4 1.8 335 2-353 142-527 (592)
87 2p1m_B Transport inhibitor res 99.8 7.3E-21 2.5E-25 213.6 -1.8 367 14-396 58-518 (594)
88 2ca6_A RAN GTPase-activating p 99.8 3.2E-20 1.1E-24 197.2 2.3 251 57-334 11-319 (386)
89 2p1m_B Transport inhibitor res 99.8 4.2E-21 1.4E-25 215.5 -5.0 342 17-376 100-519 (594)
90 2ast_B S-phase kinase-associat 99.8 8.9E-20 3.1E-24 189.7 3.4 196 77-272 70-282 (336)
91 4glp_A Monocyte differentiatio 99.8 1.7E-18 5.6E-23 178.3 12.7 225 101-351 65-306 (310)
92 3goz_A Leucine-rich repeat-con 99.8 7.8E-20 2.7E-24 192.5 2.5 110 215-329 139-264 (362)
93 2ca6_A RAN GTPase-activating p 99.8 1.3E-19 4.3E-24 192.6 2.4 240 45-311 23-319 (386)
94 3m19_A Variable lymphocyte rec 99.7 1.2E-17 4.1E-22 166.4 16.0 173 193-376 16-192 (251)
95 3m19_A Variable lymphocyte rec 99.7 3.7E-17 1.3E-21 162.8 19.3 174 57-275 16-192 (251)
96 3goz_A Leucine-rich repeat-con 99.7 3.7E-19 1.3E-23 187.4 2.9 181 192-377 81-298 (362)
97 3cvr_A Invasion plasmid antige 99.7 3.2E-17 1.1E-21 181.4 17.1 193 17-261 49-253 (571)
98 3cvr_A Invasion plasmid antige 99.7 1.2E-16 4.2E-21 176.8 18.5 187 57-286 61-255 (571)
99 2o6s_A Variable lymphocyte rec 99.7 1.3E-16 4.4E-21 154.0 16.2 168 183-363 19-189 (208)
100 1h6t_A Internalin B; cell adhe 99.7 7E-17 2.4E-21 164.5 12.5 107 210-332 108-214 (291)
101 1m9s_A Internalin B; cell inva 99.7 2.6E-16 8.9E-21 176.0 14.4 87 210-311 127-213 (605)
102 1h6t_A Internalin B; cell adhe 99.7 9.1E-16 3.1E-20 156.3 16.0 187 61-311 30-216 (291)
103 1m9s_A Internalin B; cell inva 99.6 2.2E-15 7.5E-20 168.4 17.7 83 192-279 132-214 (605)
104 3e6j_A Variable lymphocyte rec 99.6 2.8E-15 9.7E-20 147.0 15.8 147 193-350 21-170 (229)
105 4ezg_A Putative uncharacterize 99.6 1.8E-15 6.3E-20 144.6 13.9 109 210-330 84-193 (197)
106 2v9t_B SLIT homolog 2 protein 99.6 3.7E-15 1.3E-19 145.2 15.2 128 194-332 14-142 (220)
107 2v70_A SLIT-2, SLIT homolog 2 99.6 5.6E-15 1.9E-19 143.9 16.2 141 183-332 23-167 (220)
108 3e6j_A Variable lymphocyte rec 99.6 6.2E-15 2.1E-19 144.6 16.5 151 173-334 22-175 (229)
109 2v9t_B SLIT homolog 2 protein 99.6 5.6E-15 1.9E-19 143.9 16.0 148 174-331 15-165 (220)
110 2xot_A Amphoterin-induced prot 99.6 1.3E-15 4.5E-20 160.1 12.0 149 173-331 21-176 (361)
111 2o6s_A Variable lymphocyte rec 99.6 1.1E-14 3.7E-19 140.5 17.4 168 194-379 10-181 (208)
112 4ezg_A Putative uncharacterize 99.6 2.1E-15 7.3E-20 144.2 11.0 149 76-250 43-193 (197)
113 2xot_A Amphoterin-induced prot 99.6 4.2E-15 1.4E-19 156.2 13.7 172 194-377 21-203 (361)
114 2v70_A SLIT-2, SLIT homolog 2 99.6 9.9E-15 3.4E-19 142.2 14.7 66 210-275 101-166 (220)
115 1xeu_A Internalin C; cellular 99.6 2.5E-15 8.6E-20 150.6 10.4 169 77-277 19-187 (263)
116 1dce_A Protein (RAB geranylger 99.6 1.5E-17 5.3E-22 184.7 -7.4 199 119-345 345-566 (567)
117 2ell_A Acidic leucine-rich nuc 99.6 1.2E-14 3.9E-19 135.2 11.6 131 190-330 23-159 (168)
118 1xeu_A Internalin C; cellular 99.6 5.2E-15 1.8E-19 148.3 9.3 167 191-378 19-187 (263)
119 2je0_A Acidic leucine-rich nuc 99.5 2.4E-14 8.2E-19 130.2 10.1 126 190-327 16-149 (149)
120 1dce_A Protein (RAB geranylger 99.5 1.2E-17 4.1E-22 185.6 -14.5 214 75-325 347-567 (567)
121 4b8c_D Glucose-repressible alc 99.5 1.4E-14 4.7E-19 165.9 8.9 144 191-349 224-369 (727)
122 1w8a_A SLIT protein; signaling 99.5 5.9E-14 2E-18 133.6 11.6 131 194-335 11-143 (192)
123 2wfh_A SLIT homolog 2 protein 99.5 4.1E-13 1.4E-17 127.9 13.2 125 194-330 13-138 (193)
124 4b8c_D Glucose-repressible alc 99.5 1.7E-14 5.8E-19 165.1 3.7 59 199-258 278-336 (727)
125 2o6r_A Variable lymphocyte rec 99.5 5.1E-13 1.7E-17 125.2 13.3 132 193-335 9-141 (177)
126 1a9n_A U2A', U2A'; complex (nu 99.4 1.7E-13 5.8E-18 128.4 9.2 125 192-328 20-150 (176)
127 3sb4_A Hypothetical leucine ri 99.4 6.5E-13 2.2E-17 137.5 13.6 253 56-325 50-328 (329)
128 2ell_A Acidic leucine-rich nuc 99.4 4.1E-13 1.4E-17 124.6 10.7 79 77-156 24-104 (168)
129 3sb4_A Hypothetical leucine ri 99.4 3.1E-13 1.1E-17 140.0 10.4 260 17-301 43-327 (329)
130 2wfh_A SLIT homolog 2 protein 99.4 1.4E-12 4.8E-17 124.1 13.6 125 174-308 14-139 (193)
131 2je0_A Acidic leucine-rich nuc 99.4 5.9E-13 2E-17 120.9 9.6 125 212-348 15-149 (149)
132 1w8a_A SLIT protein; signaling 99.4 7.5E-13 2.6E-17 125.9 10.5 124 174-308 12-139 (192)
133 4fdw_A Leucine rich hypothetic 99.3 7.9E-11 2.7E-15 125.0 22.8 186 56-270 136-331 (401)
134 2o6r_A Variable lymphocyte rec 99.3 1.6E-11 5.4E-16 114.9 14.0 128 174-311 11-140 (177)
135 1a9n_A U2A', U2A'; complex (nu 99.3 3.3E-12 1.1E-16 119.6 6.9 131 16-158 13-151 (176)
136 2r9u_A Variable lymphocyte rec 99.2 2.3E-11 7.9E-16 113.6 10.8 107 194-311 15-121 (174)
137 3g39_A Variable lymphocyte rec 99.2 4.3E-11 1.5E-15 111.2 11.9 85 193-279 11-95 (170)
138 1ds9_A Outer arm dynein; leuci 99.2 3E-13 1E-17 129.3 -4.8 119 202-334 36-156 (198)
139 1ds9_A Outer arm dynein; leuci 99.2 1.5E-13 5.2E-18 131.4 -7.4 135 210-357 14-158 (198)
140 4fdw_A Leucine rich hypothetic 99.2 1.8E-09 6.1E-14 114.5 22.6 208 101-330 136-357 (401)
141 2r9u_A Variable lymphocyte rec 99.1 2.1E-10 7.2E-15 107.0 11.2 104 216-331 14-118 (174)
142 4fs7_A Uncharacterized protein 99.1 1.1E-08 3.8E-13 108.3 23.4 287 9-327 58-352 (394)
143 3g39_A Variable lymphocyte rec 99.1 4.8E-10 1.6E-14 104.2 11.0 106 173-279 12-119 (170)
144 4fs7_A Uncharacterized protein 99.0 3.8E-08 1.3E-12 104.2 23.9 290 3-327 76-375 (394)
145 2ifg_A High affinity nerve gro 99.0 1.6E-09 5.3E-14 112.7 11.1 105 195-310 12-118 (347)
146 3un9_A NLR family member X1; l 98.9 1.1E-09 3.9E-14 114.9 4.9 135 192-331 102-252 (372)
147 2ifg_A High affinity nerve gro 98.8 9.9E-09 3.4E-13 106.6 10.6 105 218-332 12-117 (347)
148 3un9_A NLR family member X1; l 98.8 5.6E-10 1.9E-14 117.3 -0.5 115 191-310 126-254 (372)
149 4gt6_A Cell surface protein; l 98.8 1.3E-06 4.3E-11 92.4 24.9 287 10-328 51-367 (394)
150 4gt6_A Cell surface protein; l 98.7 2.9E-06 1E-10 89.6 25.0 290 9-328 74-388 (394)
151 4h09_A Hypothetical leucine ri 98.6 6.6E-06 2.2E-10 86.3 24.3 122 192-326 218-341 (379)
152 2ra8_A Uncharacterized protein 98.5 1.4E-07 4.6E-12 98.4 6.7 16 141-156 133-148 (362)
153 2ra8_A Uncharacterized protein 98.4 1.8E-07 6.1E-12 97.5 6.1 161 96-273 168-341 (362)
154 4h09_A Hypothetical leucine ri 98.3 0.00015 5.2E-09 75.7 24.5 126 208-347 211-341 (379)
155 1io0_A Tropomodulin; LRR prote 98.2 1.1E-06 3.9E-11 82.4 4.6 66 210-275 32-106 (185)
156 3rw6_A Nuclear RNA export fact 98.0 1.4E-06 4.8E-11 86.3 2.3 69 259-335 167-237 (267)
157 1io0_A Tropomodulin; LRR prote 98.0 1.9E-06 6.4E-11 80.8 2.9 113 191-308 36-164 (185)
158 3rw6_A Nuclear RNA export fact 97.8 6.2E-06 2.1E-10 81.6 2.7 82 235-325 167-258 (267)
159 3e4g_A ATP synthase subunit S, 97.7 1.6E-05 5.3E-10 73.2 3.8 93 69-161 52-153 (176)
160 3e4g_A ATP synthase subunit S, 97.7 3.7E-05 1.2E-09 70.7 5.3 35 215-249 62-96 (176)
161 1pgv_A TMD-1, tropomodulin TMD 96.4 0.0029 1E-07 59.1 5.1 68 256-328 64-136 (197)
162 3rfe_A Platelet glycoprotein I 96.3 0.0062 2.1E-07 53.0 6.3 54 265-330 11-67 (130)
163 1pgv_A TMD-1, tropomodulin TMD 96.1 0.0049 1.7E-07 57.6 4.8 113 211-328 38-167 (197)
164 3rfe_A Platelet glycoprotein I 95.2 0.03 1E-06 48.5 6.3 53 59-112 12-67 (130)
165 2lz0_A Uncharacterized protein 24.2 1E+02 0.0036 24.5 4.9 46 201-247 6-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5e-37 Score=355.76 Aligned_cols=333 Identities=20% Similarity=0.227 Sum_probs=272.1
Q ss_pred CCcccCCCccceEeecCCCCCC-CCCCC-C-CCCCceEEEcCCCCCc-cccccCCCCC-CCcEEEccCCCCCCCCC-CCC
Q 006695 47 DQGLEYLPNELRYLHWHEYPSK-ALPFD-F-EPENLVKLNLPYSKVV-QIWEGKKRAF-KLKYVDIHNSQYLIRMP-DLS 120 (635)
Q Consensus 47 ~~~l~~l~~~L~~L~l~~~~l~-~lp~~-~-~l~~L~~L~L~~n~l~-~l~~~~~~l~-~L~~L~Ls~n~~~~~~p-~l~ 120 (635)
|..+..+++ |++|++++|.+. .+|.. + .+++|++|++++|.+. .+|..+..++ +|++|++++|.+...+| .+.
T Consensus 311 p~~~~~l~~-L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~ 389 (768)
T 3rgz_A 311 PPFFGSCSL-LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389 (768)
T ss_dssp CGGGGGCTT-CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTT
T ss_pred chHHhcCCC-ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhh
Confidence 444455544 666666666665 56654 3 5666777777777666 5666666665 67777777776655444 344
Q ss_pred C--CCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCC-CCCCCcEEecCCCCCCCccCccc---CCcc
Q 006695 121 E--TPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNL-HFMSPIKIDFSSCFNLTEFPQIS---GNIT 194 (635)
Q Consensus 121 ~--l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~p~~~---~~L~ 194 (635)
. +++|++|++++|...+.+|..++.+++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..+ ++|+
T Consensus 390 ~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 469 (768)
T 3rgz_A 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469 (768)
T ss_dssp CSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred hcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCce
Confidence 4 7789999999988888889999999999999999988777777766 78999999999987776777544 6899
Q ss_pred eEEecccccc-ccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCC
Q 006695 195 DLILSETAIQ-EVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTA 273 (635)
Q Consensus 195 ~L~L~~n~i~-~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~ 273 (635)
+|++++|.++ .+|..++.+++|++|++++|++.+.+|..++.+++|++|+|++|.+.+.+|..++.+++|+.|++++|.
T Consensus 470 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred EEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 9999999998 678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-ccCchhcccccc------------------------------------------------------------hhhcc
Q 006695 274 IT-ELPSSFANLEGL------------------------------------------------------------KDLYI 292 (635)
Q Consensus 274 l~-~lp~~~~~l~~L------------------------------------------------------------~~l~~ 292 (635)
++ .+|..+..+..+ +..+.
T Consensus 550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~ 629 (768)
T 3rgz_A 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629 (768)
T ss_dssp EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence 98 778766543211 11234
Q ss_pred CCCCccEEEcCCCCCC-cccccccCCCCccEEeccCCCCCCcCCCC---CCccceecccccccccccCccccCccccchh
Q 006695 293 GGSSLRQLNLSRNDSE-SLPASITQLSQLRSLHLKDCSMLSSLPEL---PQSLELLDAENCKQLQFIPEILSGLEEVDAS 368 (635)
Q Consensus 293 ~~~~L~~L~Ls~n~~~-~lp~~l~~l~~L~~L~L~~n~~l~~lp~l---~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l 368 (635)
.+++|+.|||++|++. .+|..++++++|+.|+|++|++.+.+|.. +++|+.||+++|...+.+|..+..++.|+.+
T Consensus 630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 5688999999999985 78999999999999999999999999974 5789999999999999999999999999999
Q ss_pred hhhhhhhccccc
Q 006695 369 VLEKATFLNSAF 380 (635)
Q Consensus 369 ~L~~n~~~~~~~ 380 (635)
++++|++.....
T Consensus 710 ~ls~N~l~g~iP 721 (768)
T 3rgz_A 710 DLSNNNLSGPIP 721 (768)
T ss_dssp ECCSSEEEEECC
T ss_pred ECcCCcccccCC
Confidence 999999876544
No 2
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.7e-35 Score=329.22 Aligned_cols=378 Identities=17% Similarity=0.162 Sum_probs=283.8
Q ss_pred CeeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCC-CC-CCCC
Q 006695 1 MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPF-DF-EPEN 78 (635)
Q Consensus 1 i~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~ 78 (635)
.+||+++|.+..+.+.+|.++++|++|++++|.++. ..|..+..+++ |++|++++|.+..++. .| .+++
T Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~--------~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW--------IHEDTFQSQHR-LDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE--------ECTTTTTTCTT-CCEEECTTCCCSEECTTTTSSCTT
T ss_pred cEEEccCCccCcCChhHhccCccceEEECCCCccce--------eChhhccCccc-cCeeeCCCCcccccChhhhccccc
Confidence 369999999999999999999999999999998872 23566777765 9999999999988754 56 7999
Q ss_pred ceEEEcCCCCCccc-cccCCCCCCCcEEEccCCCCCC-CCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCC--EEee
Q 006695 79 LVKLNLPYSKVVQI-WEGKKRAFKLKYVDIHNSQYLI-RMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLS--MLCF 154 (635)
Q Consensus 79 L~~L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~n~~~~-~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~--~L~L 154 (635)
|++|++++|+++.+ +..+..+++|++|++++|.+.. ..|.+..+++|++|++++|...+..+..++.+++|+ .|++
T Consensus 107 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186 (606)
T ss_dssp CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEEC
T ss_pred ccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEec
Confidence 99999999999988 5778999999999999999776 446777799999999999987777788899999999 8999
Q ss_pred cCCCCCCccCCCCCCCCCcEEecCCCC---------------------------------------------------CC
Q 006695 155 EGCKSLRSFPSNLHFMSPIKIDFSSCF---------------------------------------------------NL 183 (635)
Q Consensus 155 ~~~~~l~~lp~~~~l~~L~~L~l~~c~---------------------------------------------------~l 183 (635)
++|......|..+...+|+.|++++|. .+
T Consensus 187 ~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l 266 (606)
T 3t6q_A 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred CCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence 998877666666666666666665543 11
Q ss_pred CccCc----ccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchh-hh
Q 006695 184 TEFPQ----ISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPE-IL 258 (635)
Q Consensus 184 ~~~p~----~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~-~l 258 (635)
+.++. .+++|++|++++|.++++|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++. .+
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred CccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 22221 12466677777777777776666777777777777766666666666677777777777666654443 36
Q ss_pred cCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcc-cccccCCCCccEEeccCCCCCCcCCC-
Q 006695 259 EKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESL-PASITQLSQLRSLHLKDCSMLSSLPE- 336 (635)
Q Consensus 259 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~l-p~~l~~l~~L~~L~L~~n~~l~~lp~- 336 (635)
..+++|++|++++|.++.++. .+..+..+++|++|++++|.+..+ |..+..+++|++|++++|++.+..|.
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDC-------CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEE-------STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred hccCcCCEEECCCCccccccC-------cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence 667777777777776665421 011235568888899998887666 45678888899999988887766554
Q ss_pred ---CCCccceecccccccccccCccccCccccchhhhhhhhhcccc------cccCCccceEEEcCC
Q 006695 337 ---LPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSA------FTLNSACVKFVFSNC 394 (635)
Q Consensus 337 ---l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~~------~~l~~~~~~l~~~nC 394 (635)
.+++|+.|++++|......+..+..+++|+.+++++|++.... +......+.+++.+|
T Consensus 420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 3478889999988877777888888888999999988876521 222223367777776
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.3e-36 Score=347.14 Aligned_cols=366 Identities=18% Similarity=0.182 Sum_probs=183.0
Q ss_pred eecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceEE
Q 006695 3 LDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKL 82 (635)
Q Consensus 3 LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L 82 (635)
||+++|.+....+. |+++++|++|++++|.+++ .++..+..+++ |++|++++|.+........+++|++|
T Consensus 205 L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~--------~~~~~l~~l~~-L~~L~Ls~n~l~~~~~~~~l~~L~~L 274 (768)
T 3rgz_A 205 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG--------DFSRAISTCTE-LKLLNISSNQFVGPIPPLPLKSLQYL 274 (768)
T ss_dssp EECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCS--------CHHHHTTTCSS-CCEEECCSSCCEESCCCCCCTTCCEE
T ss_pred EECcCCcCCCCCcc-cccCCCCCEEECcCCcCCC--------cccHHHhcCCC-CCEEECCCCcccCccCccccCCCCEE
Confidence 44444444443333 4455555555555544431 12223333332 44444444444322222234444444
Q ss_pred EcCCCCCc-cccccCCCC-CCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCcc-ccCCCCCCEEeecCCC
Q 006695 83 NLPYSKVV-QIWEGKKRA-FKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSS-VQNFNHLSMLCFEGCK 158 (635)
Q Consensus 83 ~L~~n~l~-~l~~~~~~l-~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~-i~~l~~L~~L~L~~~~ 158 (635)
++++|.++ .+|..+... ++|++|+|++|.+...+| .++.+++|++|++++|...+.+|.. ++.+++|++|++++|.
T Consensus 275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence 44444444 344444332 444444444444443333 2444444444444444443344433 4444444444444444
Q ss_pred CCCccCCCC-CCC-CCcEEecCCCCCCCccCcc-----cCCcceEEecccccc-ccCcccccCCCccEEEeecccccccc
Q 006695 159 SLRSFPSNL-HFM-SPIKIDFSSCFNLTEFPQI-----SGNITDLILSETAIQ-EVPSSIECLTNLEKLYINRCMRLKRL 230 (635)
Q Consensus 159 ~l~~lp~~~-~l~-~L~~L~l~~c~~l~~~p~~-----~~~L~~L~L~~n~i~-~lp~~~~~l~~L~~L~L~~n~~~~~l 230 (635)
....+|..+ .++ +|+.|++++|.....+|.. .++|++|++++|.++ .+|..++.+++|++|++++|.+.+.+
T Consensus 355 l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 434 (768)
T 3rgz_A 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434 (768)
T ss_dssp EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc
Confidence 333333333 222 4444444443322222211 233555555555554 34444555555555555555555555
Q ss_pred hhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcc-ccCchhcccccch--------------hhccCCC
Q 006695 231 STSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAIT-ELPSSFANLEGLK--------------DLYIGGS 295 (635)
Q Consensus 231 p~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~--------------~l~~~~~ 295 (635)
|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.++ .+|..+..+++|+ ..+..++
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence 555555555555555555555555555555555555555555555 3444444333221 2233456
Q ss_pred CccEEEcCCCCCC-cccccccCCCCccEEeccCCCCCCcCCCC-------------------------------------
Q 006695 296 SLRQLNLSRNDSE-SLPASITQLSQLRSLHLKDCSMLSSLPEL------------------------------------- 337 (635)
Q Consensus 296 ~L~~L~Ls~n~~~-~lp~~l~~l~~L~~L~L~~n~~l~~lp~l------------------------------------- 337 (635)
+|+.|+|++|++. .+|..+..+++|+.|++++|++.+.+|..
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence 7777777777764 56767777777777777777766555531
Q ss_pred ------------------------------------CCccceecccccccccccCccccCccccchhhhhhhhhccc
Q 006695 338 ------------------------------------PQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNS 378 (635)
Q Consensus 338 ------------------------------------~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~ 378 (635)
.++|+.|++++|...+.+|..+..++.|+.|+|++|.+...
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ 671 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCC
Confidence 13566777777776667777777777777777777776643
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.2e-36 Score=339.69 Aligned_cols=389 Identities=12% Similarity=0.098 Sum_probs=272.6
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCccc-----------------------------------------
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIM----------------------------------------- 40 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~----------------------------------------- 40 (635)
.|||+++.+....+.+|++|++|++|+|++|.+...+..
T Consensus 85 ~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~ 164 (636)
T 4eco_A 85 GLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD 164 (636)
T ss_dssp EEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred EEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHH
Confidence 589999998877788999999999999999864100000
Q ss_pred ----------------------------ceeeecCCcccCCCccceEeecCCCCCCC------------------CCCCC
Q 006695 41 ----------------------------ISKVHLDQGLEYLPNELRYLHWHEYPSKA------------------LPFDF 74 (635)
Q Consensus 41 ----------------------------~~~~~l~~~l~~l~~~L~~L~l~~~~l~~------------------lp~~~ 74 (635)
..--.+|..+..+++ |++|++++|.+.. +|..+
T Consensus 165 l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~-L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l 243 (636)
T 4eco_A 165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTK-LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL 243 (636)
T ss_dssp HHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTT-CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred HhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccC-CCEEECcCCccccccccccccccccchhcccCchhh
Confidence 000114555666554 7777777777776 77664
Q ss_pred ---CCCCceEEEcCCCCCc-cccccCCCCCCCcEEEccCCC-CCC-CCCC-CCCC------CCCCEEeecCCCCCcccCc
Q 006695 75 ---EPENLVKLNLPYSKVV-QIWEGKKRAFKLKYVDIHNSQ-YLI-RMPD-LSET------PNLERTNLKNCINLTCVPS 141 (635)
Q Consensus 75 ---~l~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~Ls~n~-~~~-~~p~-l~~l------~~L~~L~L~~n~~l~~~~~ 141 (635)
.+++|++|++++|++. .+|..+.++++|++|+|++|+ +.. .+|. ++.+ ++|++|++++|... .+|.
T Consensus 244 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~ 322 (636)
T 4eco_A 244 KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPV 322 (636)
T ss_dssp CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC
T ss_pred hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCc
Confidence 3777777777777654 566777777777777777776 444 4552 4443 77777777777554 6776
Q ss_pred --cccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCccc---CC-cceEEeccccccccCcccccCC-
Q 006695 142 --SVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQIS---GN-ITDLILSETAIQEVPSSIECLT- 214 (635)
Q Consensus 142 --~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~---~~-L~~L~L~~n~i~~lp~~~~~l~- 214 (635)
.++.+++|+.|++++|...+.+|....+++|+.|++++|. ++.+|..+ ++ |++|++++|.++.+|..+..++
T Consensus 323 ~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l 401 (636)
T 4eco_A 323 ETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSV 401 (636)
T ss_dssp HHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCS
T ss_pred hhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccchhhhhccc
Confidence 6777777777777776655466622266677777777753 33555433 45 7777777777777777666544
Q ss_pred -CccEEEeecccccccchhccc-------CCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhccccc
Q 006695 215 -NLEKLYINRCMRLKRLSTSIC-------KLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEG 286 (635)
Q Consensus 215 -~L~~L~L~~n~~~~~lp~~~~-------~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~ 286 (635)
+|+.|++++|.+.+..|..+. .+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|..+...
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~-- 479 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD-- 479 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEE--
T ss_pred CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcc--
Confidence 777777777777777777666 6677778888777776444445566777888888888777777543211
Q ss_pred chhhccCCCCccEEEcCCCCCCccccccc--CCCCccEEeccCCCCCCcCCCC---CCccceeccc------cccccccc
Q 006695 287 LKDLYIGGSSLRQLNLSRNDSESLPASIT--QLSQLRSLHLKDCSMLSSLPEL---PQSLELLDAE------NCKQLQFI 355 (635)
Q Consensus 287 L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~--~l~~L~~L~L~~n~~l~~lp~l---~~sL~~L~l~------~c~~l~~~ 355 (635)
+......+++|+.|+|++|+++.+|..+. .+++|++|+|++|++.+ +|.. .++|+.|+++ +|...+.+
T Consensus 480 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~ 558 (636)
T 4eco_A 480 ENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558 (636)
T ss_dssp TTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCC
T ss_pred ccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccC
Confidence 00011223489999999999999998886 99999999999988877 7763 5789999994 56667888
Q ss_pred CccccCccccchhhhhhhhhcccccccCCccceEEEcCCcc
Q 006695 356 PEILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLK 396 (635)
Q Consensus 356 ~~~~~~L~~L~~l~L~~n~~~~~~~~l~~~~~~l~~~nC~~ 396 (635)
|..+..+++|+.|+|++|.+......+....+.+++.+|+-
T Consensus 559 p~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 559 PEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPN 599 (636)
T ss_dssp CTTGGGCSSCCEEECCSSCCCBCCSCCCTTCCEEECCSCTT
T ss_pred hHHHhcCCCCCEEECCCCcCCccCHhHhCcCCEEECcCCCC
Confidence 99999999999999999999655444445557888888743
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.3e-34 Score=324.82 Aligned_cols=372 Identities=17% Similarity=0.150 Sum_probs=245.4
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCC-CCCC-CCCCc
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKAL-PFDF-EPENL 79 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~l-p~~~-~l~~L 79 (635)
.||+++|.+..+.+.+|.++++|++|++++|.++++ .+..+..+++ |++|++++|.+..+ |..| .+++|
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i--------~~~~~~~l~~-L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI--------EDKAWHGLHH-LSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE--------CTTTTTTCTT-CCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred EEECCCCCcCEeChhhccCCccCcEEeCCCCccccc--------CHHHhhchhh-cCEeECCCCcccccChhhcCCcccC
Confidence 578888888888777888888888888888777621 1344555544 77777777777666 4445 67777
Q ss_pred eEEEcCCCCCcccc-ccCCCCCCCcEEEccCCCCCC-CCC-CCCCCCCCCEEeecCCCCCcccCccc-------------
Q 006695 80 VKLNLPYSKVVQIW-EGKKRAFKLKYVDIHNSQYLI-RMP-DLSETPNLERTNLKNCINLTCVPSSV------------- 143 (635)
Q Consensus 80 ~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~~~~-~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i------------- 143 (635)
++|++++|.++.++ ..+..+++|++|++++|.+.. .+| .++++++|++|++++|...+..+..+
T Consensus 107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L 186 (606)
T 3vq2_A 107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL 186 (606)
T ss_dssp CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEE
T ss_pred CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccccccee
Confidence 77777777776665 456677777777777776553 344 36667777777776664433222211
Q ss_pred --------------------------------------------------------------------------------
Q 006695 144 -------------------------------------------------------------------------------- 143 (635)
Q Consensus 144 -------------------------------------------------------------------------------- 143 (635)
T Consensus 187 ~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 266 (606)
T 3vq2_A 187 DMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266 (606)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEE
T ss_pred eccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhe
Confidence
Q ss_pred -------------------------------------cCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCcc
Q 006695 144 -------------------------------------QNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEF 186 (635)
Q Consensus 144 -------------------------------------~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~ 186 (635)
..+++|+.|++++|.. +.+|.. .+++|+.|++++|..+..+
T Consensus 267 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~ 344 (606)
T 3vq2_A 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISF 344 (606)
T ss_dssp EECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEEC
T ss_pred eccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccch
Confidence 2222333333333332 333322 4444444444444333332
Q ss_pred C-cccCCcceEEecccccccc---CcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcch-hhhcCC
Q 006695 187 P-QISGNITDLILSETAIQEV---PSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFP-EILEKM 261 (635)
Q Consensus 187 p-~~~~~L~~L~L~~n~i~~l---p~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~-~~l~~l 261 (635)
+ ..+++|++|++++|.++.+ |..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|.+.+..+ ..+..+
T Consensus 345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 423 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423 (606)
T ss_dssp CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence 2 1235677777777777665 5567777777777777776543 55667777777777777777766666 567777
Q ss_pred CCCCEEEecCCCcccc-CchhcccccchhhccCCCCccEEEcCCCCCCc--ccccccCCCCccEEeccCCCCCCcCCCC-
Q 006695 262 ESVKCISLERTAITEL-PSSFANLEGLKDLYIGGSSLRQLNLSRNDSES--LPASITQLSQLRSLHLKDCSMLSSLPEL- 337 (635)
Q Consensus 262 ~~L~~L~L~~n~l~~l-p~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~--lp~~l~~l~~L~~L~L~~n~~l~~lp~l- 337 (635)
++|+.|++++|.++.. |.. +..+++|++|++++|.+.. +|..++.+++|++|+|++|++.+..|..
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~----------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 493 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGI----------FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493 (606)
T ss_dssp TTCCEEECTTSCCEECCTTT----------TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ccCCEEECcCCCCCccchhh----------hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh
Confidence 7777777777777753 333 3456889999999998865 6777889999999999998887777653
Q ss_pred --CCccceecccccccccccCccccCccccchhhhhhhhhcccccc---cCCccceEEEcCCc
Q 006695 338 --PQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFT---LNSACVKFVFSNCL 395 (635)
Q Consensus 338 --~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~~~~---l~~~~~~l~~~nC~ 395 (635)
+++|+.|++++|......|..+..+++|+.+++++|++...... ++...+.+++.+++
T Consensus 494 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCC
T ss_pred cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCC
Confidence 47899999999988777788888899999999999988755332 22223566666653
No 6
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-34 Score=323.39 Aligned_cols=370 Identities=18% Similarity=0.170 Sum_probs=260.4
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCc
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENL 79 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L 79 (635)
+||+++|++..+.+.+|.++++|++|++++|.++++ .+..+..+++ |++|++++|.+..+|.. | .+++|
T Consensus 30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~--------~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI--------EGDAFYSLGS-LEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE--------CTTTTTTCTT-CCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred EEECcCCccCccChhhhhcCCcccEEECCCCCcCcc--------Chhhcccccc-CCEEECCCCccCccCHHHhccCCCC
Confidence 689999999999999999999999999999988722 2456666665 99999999999998876 5 78999
Q ss_pred eEEEcCCCCCccc--cccCCCCCCCcEEEccCCCCCCCCC--CCCCCCCCCEEeecCCCCCcccCccccCCC--------
Q 006695 80 VKLNLPYSKVVQI--WEGKKRAFKLKYVDIHNSQYLIRMP--DLSETPNLERTNLKNCINLTCVPSSVQNFN-------- 147 (635)
Q Consensus 80 ~~L~L~~n~l~~l--~~~~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~-------- 147 (635)
++|++++|.++.+ +..+..+++|++|++++|.....+| .++++++|++|++++|...+..|..++.++
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 9999999999854 6778999999999999998666665 588999999999999987777777776554
Q ss_pred ----------------CCCEEeecCCCCCCcc--CCC--CCCCCCcEEec----------------------------CC
Q 006695 148 ----------------HLSMLCFEGCKSLRSF--PSN--LHFMSPIKIDF----------------------------SS 179 (635)
Q Consensus 148 ----------------~L~~L~L~~~~~l~~l--p~~--~~l~~L~~L~l----------------------------~~ 179 (635)
+|+.|++++|+..+.. +.. ..+++|+.|++ ++
T Consensus 181 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~ 260 (549)
T 2z81_A 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD 260 (549)
T ss_dssp CSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred cCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence 4555555544332210 000 02233333333 22
Q ss_pred CCCCC--cc------------------------C------------cccCCcceEEeccccccccCccc-ccCCCccEEE
Q 006695 180 CFNLT--EF------------------------P------------QISGNITDLILSETAIQEVPSSI-ECLTNLEKLY 220 (635)
Q Consensus 180 c~~l~--~~------------------------p------------~~~~~L~~L~L~~n~i~~lp~~~-~~l~~L~~L~ 220 (635)
|.... .+ + ...++|++|++++|.++.+|..+ ..+++|++|+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~ 340 (549)
T 2z81_A 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLD 340 (549)
T ss_dssp CEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEE
T ss_pred ccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEE
Confidence 21000 00 0 11246888888888888888876 5799999999
Q ss_pred eecccccccchh---cccCCCCCcEEecCCCCCCCcch--hhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCC
Q 006695 221 INRCMRLKRLST---SICKLKSLHVLVLDDCSKLERFP--EILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGS 295 (635)
Q Consensus 221 L~~n~~~~~lp~---~~~~l~~L~~L~Ls~n~~~~~~~--~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~ 295 (635)
+++|.+.+..|. .++.+++|++|++++|.+.+..+ ..+..+++|++|++++|+++.+|..+.. ++
T Consensus 341 Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~----------~~ 410 (549)
T 2z81_A 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQW----------PE 410 (549)
T ss_dssp CCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCC----------CT
T ss_pred ccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcc----------cc
Confidence 999998887653 37789999999999998766432 5688999999999999999998876543 46
Q ss_pred CccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCCCCCccceecccccccccccCccccCccccchhhhhhhhh
Q 006695 296 SLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATF 375 (635)
Q Consensus 296 ~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~ 375 (635)
+|++|++++|+++.+|..+. ++|++|++++|++.+ ++..+++|++|++++|.. +.+|. ...+++|+.++|++|++
T Consensus 411 ~L~~L~Ls~N~l~~l~~~~~--~~L~~L~Ls~N~l~~-~~~~l~~L~~L~Ls~N~l-~~ip~-~~~l~~L~~L~Ls~N~l 485 (549)
T 2z81_A 411 KMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDS-FSLFLPRLQELYISRNKL-KTLPD-ASLFPVLLVMKISRNQL 485 (549)
T ss_dssp TCCEEECTTSCCSCCCTTSC--TTCSEEECCSSCCSC-CCCCCTTCCEEECCSSCC-SSCCC-GGGCTTCCEEECCSSCC
T ss_pred cccEEECCCCCcccccchhc--CCceEEECCCCChhh-hcccCChhcEEECCCCcc-CcCCC-cccCccCCEEecCCCcc
Confidence 67777777777766665432 466777777665544 334456677777777643 34554 34566677777777766
Q ss_pred cccccc---cCCccceEEEcCCc
Q 006695 376 LNSAFT---LNSACVKFVFSNCL 395 (635)
Q Consensus 376 ~~~~~~---l~~~~~~l~~~nC~ 395 (635)
...... .....+.+++.+++
T Consensus 486 ~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 486 KSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCCCTTGGGGCTTCCEEECCSSC
T ss_pred CCcCHHHHhcCcccCEEEecCCC
Confidence 554221 11222556666654
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.1e-34 Score=326.54 Aligned_cols=354 Identities=15% Similarity=0.124 Sum_probs=291.2
Q ss_pred CcccccChhhhcCCCCCcEEEeecCCCCCC-------cccceee--ecCCccc--CCCccceEeecCCCCC-CCCCCCC-
Q 006695 8 ITSIHLSPQAFANMPNLRFLKFYMPEHNGV-------PIMISKV--HLDQGLE--YLPNELRYLHWHEYPS-KALPFDF- 74 (635)
Q Consensus 8 n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~-------~~~~~~~--~l~~~l~--~l~~~L~~L~l~~~~l-~~lp~~~- 74 (635)
|++..+ |.+|+++++|++|++++|.+++. +...... .+|..+. .+++ |++|++++|.+ ..+|..+
T Consensus 193 n~l~~i-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~-L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 193 NNITFV-SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKD-LTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp CEEEEE-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT-CCEEEEECCTTCSSCCTTTT
T ss_pred CCCccC-CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCC-CCEEEecCCcCCccChHHHh
Confidence 355554 56799999999999999998831 0000000 1778877 7766 99999999985 6788877
Q ss_pred CCCCceEEEcCCCC-Ccc--ccccCCCC------CCCcEEEccCCCCCCCCCC---CCCCCCCCEEeecCCCCCcccCcc
Q 006695 75 EPENLVKLNLPYSK-VVQ--IWEGKKRA------FKLKYVDIHNSQYLIRMPD---LSETPNLERTNLKNCINLTCVPSS 142 (635)
Q Consensus 75 ~l~~L~~L~L~~n~-l~~--l~~~~~~l------~~L~~L~Ls~n~~~~~~p~---l~~l~~L~~L~L~~n~~l~~~~~~ 142 (635)
.+++|++|++++|+ ++. +|..+..+ ++|++|+|++|++. .+|. ++.+++|+.|++++|...+.+| .
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 79999999999998 884 88887776 99999999999977 6775 9999999999999998877999 9
Q ss_pred ccCCCCCCEEeecCCCCCCccCCCC-CCCC-CcEEecCCCCCCCccCccc-----CCcceEEeccccccc-cCcccc---
Q 006695 143 VQNFNHLSMLCFEGCKSLRSFPSNL-HFMS-PIKIDFSSCFNLTEFPQIS-----GNITDLILSETAIQE-VPSSIE--- 211 (635)
Q Consensus 143 i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~-L~~L~l~~c~~l~~~p~~~-----~~L~~L~L~~n~i~~-lp~~~~--- 211 (635)
++.+++|+.|++++|... .+|..+ .+++ |+.|++++|. ++.+|..+ .+|++|++++|.++. +|..+.
T Consensus 349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~ 426 (636)
T 4eco_A 349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426 (636)
T ss_dssp CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence 999999999999998644 888777 7888 9999999976 55777654 379999999999986 466677
Q ss_pred ----cCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchh-hhcCC-------CCCCEEEecCCCccccCc
Q 006695 212 ----CLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPE-ILEKM-------ESVKCISLERTAITELPS 279 (635)
Q Consensus 212 ----~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~-~l~~l-------~~L~~L~L~~n~l~~lp~ 279 (635)
.+++|++|++++|.+.+..+..+..+++|++|+|++|.+. .+|. .+... ++|+.|++++|.++.+|.
T Consensus 427 ~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 505 (636)
T 4eco_A 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD 505 (636)
T ss_dssp SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCG
T ss_pred cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccCh
Confidence 7889999999999988544445667999999999999888 4554 33333 399999999999999987
Q ss_pred hhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEecc------CCCCCCcCCCC---CCccceecccccc
Q 006695 280 SFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLK------DCSMLSSLPEL---PQSLELLDAENCK 350 (635)
Q Consensus 280 ~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~------~n~~l~~lp~l---~~sL~~L~l~~c~ 350 (635)
.+.. ..+++|+.|+|++|+++.+|..+..+++|++|+|+ +|++.+.+|.. +++|+.|++++|.
T Consensus 506 ~~~~--------~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 506 DFRA--------TTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp GGST--------TTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred hhhh--------ccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence 6520 25689999999999999999999999999999994 56778888864 5799999999998
Q ss_pred cccccCccccCccccchhhhhhhhhcccc
Q 006695 351 QLQFIPEILSGLEEVDASVLEKATFLNSA 379 (635)
Q Consensus 351 ~l~~~~~~~~~L~~L~~l~L~~n~~~~~~ 379 (635)
. +.+|..+. ++|+.+++++|++.+..
T Consensus 578 l-~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 578 I-RKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp C-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred C-CccCHhHh--CcCCEEECcCCCCcccc
Confidence 7 78887755 79999999999988764
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.3e-34 Score=320.69 Aligned_cols=352 Identities=17% Similarity=0.147 Sum_probs=281.2
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCc
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENL 79 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L 79 (635)
+||+++|.+..+.+.+|.++++|++|++++|.++++ .|..+..+++ |++|++++|.+..+|.. + .+++|
T Consensus 60 ~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~--------~p~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L 130 (606)
T 3vq2_A 60 WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF--------SPGSFSGLTS-LENLVAVETKLASLESFPIGQLITL 130 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC--------CTTSSTTCTT-CCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred EEeCCCCcccccCHHHhhchhhcCEeECCCCccccc--------ChhhcCCccc-CCEEEccCCccccccccccCCCCCC
Confidence 689999999999899999999999999999988733 2455555554 77777777777666633 4 56677
Q ss_pred eEEEcCCCCCc--cccccCCCCCCCcEEEccCCCCCCC------------------------------------------
Q 006695 80 VKLNLPYSKVV--QIWEGKKRAFKLKYVDIHNSQYLIR------------------------------------------ 115 (635)
Q Consensus 80 ~~L~L~~n~l~--~l~~~~~~l~~L~~L~Ls~n~~~~~------------------------------------------ 115 (635)
++|++++|.++ .+|..+.++++|++|++++|.+...
T Consensus 131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~ 210 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT 210 (606)
T ss_dssp CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred CEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeee
Confidence 77777777666 3566666666666666666654321
Q ss_pred --------------------------------------------------------------------------------
Q 006695 116 -------------------------------------------------------------------------------- 115 (635)
Q Consensus 116 -------------------------------------------------------------------------------- 115 (635)
T Consensus 211 L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L 290 (606)
T 3vq2_A 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290 (606)
T ss_dssp EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEE
T ss_pred ccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEE
Confidence
Q ss_pred ---------CCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCcc
Q 006695 116 ---------MPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEF 186 (635)
Q Consensus 116 ---------~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~ 186 (635)
+|.+..+++|++|++++|.. +.+| .+ .+++|+.|++++|+....+ ....+++|+.|++++|.. +..
T Consensus 291 ~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l-~~~ 365 (606)
T 3vq2_A 291 SLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNAL-SFS 365 (606)
T ss_dssp EEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCE-EEE
T ss_pred EecCccchhhhhccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCcc-CCC
Confidence 11234445777778887755 7777 55 9999999999999777666 334899999999999743 332
Q ss_pred ---C---cccCCcceEEeccccccccCcccccCCCccEEEeecccccccch-hcccCCCCCcEEecCCCCCCCcchhhhc
Q 006695 187 ---P---QISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLS-TSICKLKSLHVLVLDDCSKLERFPEILE 259 (635)
Q Consensus 187 ---p---~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp-~~~~~l~~L~~L~Ls~n~~~~~~~~~l~ 259 (635)
+ ...++|++|++++|.++.+|..+..+++|+.|++++|.+.+..| ..+..+++|++|++++|.+.+..|..+.
T Consensus 366 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 445 (606)
T 3vq2_A 366 GCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445 (606)
T ss_dssp EECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred cchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc
Confidence 3 23478999999999999999999999999999999999988877 6889999999999999999999999999
Q ss_pred CCCCCCEEEecCCCccc--cCchhcccccchhhccCCCCccEEEcCCCCCCccc-ccccCCCCccEEeccCCCCCCcCCC
Q 006695 260 KMESVKCISLERTAITE--LPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLP-ASITQLSQLRSLHLKDCSMLSSLPE 336 (635)
Q Consensus 260 ~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp-~~l~~l~~L~~L~L~~n~~l~~lp~ 336 (635)
.+++|+.|++++|.++. +|..+ ..+++|+.|+|++|.++.++ ..+..+++|++|+|++|++.+..|.
T Consensus 446 ~l~~L~~L~l~~n~l~~~~~~~~~----------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 515 (606)
T 3vq2_A 446 GLTSLNTLKMAGNSFKDNTLSNVF----------ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515 (606)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCC----------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG
T ss_pred CCCCCCEEECCCCcCCCcchHHhh----------ccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH
Confidence 99999999999999986 56554 55689999999999998774 5689999999999999999887776
Q ss_pred C---CCccceecccccccccccCccccCcc-ccchhhhhhhhhccc
Q 006695 337 L---PQSLELLDAENCKQLQFIPEILSGLE-EVDASVLEKATFLNS 378 (635)
Q Consensus 337 l---~~sL~~L~l~~c~~l~~~~~~~~~L~-~L~~l~L~~n~~~~~ 378 (635)
. +++|+.|++++|. ++.+|..+..++ +|+.+++++|++.+.
T Consensus 516 ~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 516 HYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp GTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred HccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCcccC
Confidence 3 4789999999997 557887788887 599999999988654
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.3e-34 Score=328.69 Aligned_cols=389 Identities=13% Similarity=0.105 Sum_probs=305.1
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEe-ecCCCCCC-ccc---------------------------------------
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKF-YMPEHNGV-PIM--------------------------------------- 40 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L-~~n~l~~~-~~~--------------------------------------- 40 (635)
.|||+++.+....|.+|+++++|++|+| ++|.+.+. +..
T Consensus 327 ~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~ 406 (876)
T 4ecn_A 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406 (876)
T ss_dssp EEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred EEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHH
Confidence 5899999998777899999999999999 77754321 000
Q ss_pred ----------------------------ceeeecCCcccCCCccceEeecCCCCCCC------------------CCCCC
Q 006695 41 ----------------------------ISKVHLDQGLEYLPNELRYLHWHEYPSKA------------------LPFDF 74 (635)
Q Consensus 41 ----------------------------~~~~~l~~~l~~l~~~L~~L~l~~~~l~~------------------lp~~~ 74 (635)
..--.+|..+..+++ |++|++++|.+.. +|..+
T Consensus 407 ~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~-L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l 485 (876)
T 4ecn_A 407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTK-LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEEL 485 (876)
T ss_dssp HHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTT-CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred HhhhCccccccccccccchhhceeccccCcccchhHHHhcCCC-CCEEECcCCcCCCCcccccccccccccccccCChhh
Confidence 000016777777766 9999999999988 89886
Q ss_pred ---CCCCceEEEcCCCCCc-cccccCCCCCCCcEEEccCCC-CCC-CCC--------CCCCCCCCCEEeecCCCCCcccC
Q 006695 75 ---EPENLVKLNLPYSKVV-QIWEGKKRAFKLKYVDIHNSQ-YLI-RMP--------DLSETPNLERTNLKNCINLTCVP 140 (635)
Q Consensus 75 ---~l~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~Ls~n~-~~~-~~p--------~l~~l~~L~~L~L~~n~~l~~~~ 140 (635)
.+++|++|+|++|++. .+|..+.++++|+.|+|++|+ +.. .+| .+..+++|+.|+|++|... .+|
T Consensus 486 ~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip 564 (876)
T 4ecn_A 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFP 564 (876)
T ss_dssp CGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCC
T ss_pred hhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccC
Confidence 5899999999999855 788889999999999999998 554 455 2445669999999998666 888
Q ss_pred c--cccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCccc---CC-cceEEeccccccccCcccccCC
Q 006695 141 S--SVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQIS---GN-ITDLILSETAIQEVPSSIECLT 214 (635)
Q Consensus 141 ~--~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~---~~-L~~L~L~~n~i~~lp~~~~~l~ 214 (635)
. .++.+++|+.|++++|... .+|....+++|+.|++++|. +..+|..+ ++ |+.|+|++|.++.+|..+..++
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~ 642 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKS 642 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTC
T ss_pred ChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCCCCcCchhhhccc
Confidence 8 8999999999999988755 88844488899999999875 44777543 56 9999999999999998887765
Q ss_pred C--ccEEEeecccccccchhc---cc--CCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccc
Q 006695 215 N--LEKLYINRCMRLKRLSTS---IC--KLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGL 287 (635)
Q Consensus 215 ~--L~~L~L~~n~~~~~lp~~---~~--~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L 287 (635)
. |+.|++++|.+.+.+|.. +. .+++|+.|+|++|.+....+..+..+++|+.|+|++|.|+.+|..+....
T Consensus 643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~-- 720 (876)
T 4ecn_A 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK-- 720 (876)
T ss_dssp SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCT--
T ss_pred cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccc--
Confidence 4 999999999988765532 22 34589999999998885444455689999999999999999887653211
Q ss_pred hhhccCCCCccEEEcCCCCCCccccccc--CCCCccEEeccCCCCCCcCCC---CCCccceecccc------cccccccC
Q 006695 288 KDLYIGGSSLRQLNLSRNDSESLPASIT--QLSQLRSLHLKDCSMLSSLPE---LPQSLELLDAEN------CKQLQFIP 356 (635)
Q Consensus 288 ~~l~~~~~~L~~L~Ls~n~~~~lp~~l~--~l~~L~~L~L~~n~~l~~lp~---l~~sL~~L~l~~------c~~l~~~~ 356 (635)
......+++|+.|+|++|+++.+|..+. .+++|+.|+|++|++.+ +|. .+++|+.|++++ |...+.+|
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip 799 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC
T ss_pred cccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccCh
Confidence 0011234589999999999999998887 99999999999988876 675 357899999976 66678889
Q ss_pred ccccCccccchhhhhhhhhcccccccCCccceEEEcCCccc
Q 006695 357 EILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLKL 397 (635)
Q Consensus 357 ~~~~~L~~L~~l~L~~n~~~~~~~~l~~~~~~l~~~nC~~L 397 (635)
..+..+++|+.|+|++|.+......+.+.++.+++.+|+-.
T Consensus 800 ~~l~~L~~L~~L~Ls~N~L~~Ip~~l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 800 TGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNI 840 (876)
T ss_dssp TTGGGCSSCCEEECCSSCCCBCCSCCCSSSCEEECCSCTTC
T ss_pred HHHhcCCCCCEEECCCCCCCccCHhhcCCCCEEECCCCCCC
Confidence 99999999999999999996555445555688899888643
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-33 Score=319.11 Aligned_cols=391 Identities=19% Similarity=0.166 Sum_probs=211.4
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcc-ccee------e--------ec-CCcccCCCccceEeecCCC
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPI-MISK------V--------HL-DQGLEYLPNELRYLHWHEY 65 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~-~~~~------~--------~l-~~~l~~l~~~L~~L~l~~~ 65 (635)
+||+++|++..+.+.+|+++++|++|++++|.+++++. .... + .+ +..+..+++ |++|++++|
T Consensus 61 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~-L~~L~L~~n 139 (606)
T 3t6q_A 61 FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT-LESLYLGSN 139 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTT-CCEEECCSS
T ss_pred EEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCc-ccEEECCCC
Confidence 57888888888888888888888888888887763211 0000 0 00 122333332 666666666
Q ss_pred CCCCC--CCCCCCCCceEEEcCCCCCcccc-ccCCCCCCCc--EEEccCCCCCCCCCCCCCCC-----------------
Q 006695 66 PSKAL--PFDFEPENLVKLNLPYSKVVQIW-EGKKRAFKLK--YVDIHNSQYLIRMPDLSETP----------------- 123 (635)
Q Consensus 66 ~l~~l--p~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~--~L~Ls~n~~~~~~p~l~~l~----------------- 123 (635)
.+..+ |..+.+++|++|++++|.++.++ ..+..+++|+ .|++++|.+....|......
T Consensus 140 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 219 (606)
T 3t6q_A 140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219 (606)
T ss_dssp CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHH
T ss_pred cccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHh
Confidence 66554 33345666666666666665542 3344445554 45555544333222111111
Q ss_pred -----------------------------------CCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCC-
Q 006695 124 -----------------------------------NLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNL- 167 (635)
Q Consensus 124 -----------------------------------~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~- 167 (635)
+|+.|++++|......+..++.+++|+.|++++|. ++.+|..+
T Consensus 220 ~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~ 298 (606)
T 3t6q_A 220 KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLV 298 (606)
T ss_dssp HHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCC
T ss_pred hhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhc
Confidence 22233333332222222234455555555555543 33444433
Q ss_pred CCCCCcEEecCCCCCCCccCc---ccCCcceEEecccccc-ccCcc-cccCCCccEEEeecccccccc--hhcccCCCCC
Q 006695 168 HFMSPIKIDFSSCFNLTEFPQ---ISGNITDLILSETAIQ-EVPSS-IECLTNLEKLYINRCMRLKRL--STSICKLKSL 240 (635)
Q Consensus 168 ~l~~L~~L~l~~c~~l~~~p~---~~~~L~~L~L~~n~i~-~lp~~-~~~l~~L~~L~L~~n~~~~~l--p~~~~~l~~L 240 (635)
.+++|+.|++++|......|. .+++|++|++++|.+. .+|.. ++.+++|++|++++|.+.+.. +..+..+++|
T Consensus 299 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 378 (606)
T 3t6q_A 299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378 (606)
T ss_dssp SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTC
T ss_pred ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCC
Confidence 445555555555432222121 1234444444444443 33322 444444444444444443333 3344444444
Q ss_pred cEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccC--chhcccccch--------------hhccCCCCccEEEcCC
Q 006695 241 HVLVLDDCSKLERFPEILEKMESVKCISLERTAITELP--SSFANLEGLK--------------DLYIGGSSLRQLNLSR 304 (635)
Q Consensus 241 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp--~~~~~l~~L~--------------~l~~~~~~L~~L~Ls~ 304 (635)
++|++++|.+.+..|..+..+++|+.|++++|.++..+ ..+..+++|+ ..+..+++|++|++++
T Consensus 379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 458 (606)
T 3t6q_A 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG 458 (606)
T ss_dssp CEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCC
Confidence 44444444444444444444444444444444444221 1122222211 2235568899999999
Q ss_pred CCCCc--cc--ccccCCCCccEEeccCCCCCCcCCCC---CCccceecccccccccccCccccCccccchhhhhhhhhcc
Q 006695 305 NDSES--LP--ASITQLSQLRSLHLKDCSMLSSLPEL---PQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLN 377 (635)
Q Consensus 305 n~~~~--lp--~~l~~l~~L~~L~L~~n~~l~~lp~l---~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~ 377 (635)
|.+.. +| ..+..+++|++|++++|++.+..|.. +++|+.|++++|......|..+..++.| .+++++|.+..
T Consensus 459 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~ 537 (606)
T 3t6q_A 459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI 537 (606)
T ss_dssp CBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred CCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc
Confidence 98765 22 45788999999999998887776653 4789999999998888888889999999 89999998876
Q ss_pred ccccc---CCccceEEEcCCc
Q 006695 378 SAFTL---NSACVKFVFSNCL 395 (635)
Q Consensus 378 ~~~~l---~~~~~~l~~~nC~ 395 (635)
..... ....+.+++.+++
T Consensus 538 ~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 538 ILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CCGGGHHHHHTSSEEECTTCC
T ss_pred cCHhhcccCCCCCEEeCCCCC
Confidence 53321 1223677777765
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.1e-34 Score=331.82 Aligned_cols=359 Identities=16% Similarity=0.184 Sum_probs=292.4
Q ss_pred eeecCCCcccc-----------------cChhhhc--CCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeec
Q 006695 2 FLDLSKITSIH-----------------LSPQAFA--NMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHW 62 (635)
Q Consensus 2 ~LdLs~n~~~~-----------------l~~~~f~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l 62 (635)
+|||++|.+.. ..|..++ +|++|++|+|++|.+. ..+|..+..+++ |++|++
T Consensus 452 ~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~--------~~iP~~l~~L~~-L~~L~L 522 (876)
T 4ecn_A 452 IIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM--------TQLPDFLYDLPE-LQSLNI 522 (876)
T ss_dssp EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC--------CSCCGGGGGCSS-CCEEEC
T ss_pred EEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC--------ccChHHHhCCCC-CCEEEC
Confidence 68999999887 1355555 9999999999999876 256778888876 999999
Q ss_pred CCCC-CCC--CCCCC--------CCCCceEEEcCCCCCccccc--cCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEe
Q 006695 63 HEYP-SKA--LPFDF--------EPENLVKLNLPYSKVVQIWE--GKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTN 129 (635)
Q Consensus 63 ~~~~-l~~--lp~~~--------~l~~L~~L~L~~n~l~~l~~--~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~ 129 (635)
++|. +.. +|..+ .+++|++|+|++|+++.+|. .+..+++|+.|+|++|.+. .+|.++.+++|+.|+
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~ 601 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLK 601 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEE
Confidence 9998 764 77543 45699999999999999998 8999999999999999977 788999999999999
Q ss_pred ecCCCCCcccCccccCCCC-CCEEeecCCCCCCccCCCCC---CCCCcEEecCCCCCCCccCccc--------CCcceEE
Q 006695 130 LKNCINLTCVPSSVQNFNH-LSMLCFEGCKSLRSFPSNLH---FMSPIKIDFSSCFNLTEFPQIS--------GNITDLI 197 (635)
Q Consensus 130 L~~n~~l~~~~~~i~~l~~-L~~L~L~~~~~l~~lp~~~~---l~~L~~L~l~~c~~l~~~p~~~--------~~L~~L~ 197 (635)
|++|... .+|..+..+++ |+.|++++|.. ..+|..+. .++|+.|++++|.....+|... .+|+.|+
T Consensus 602 Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L-~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 602 LDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp CCSSCCS-CCCTTSCEECTTCCEEECCSSCC-CSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred CcCCccc-cchHHHhhccccCCEEECcCCCC-CcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence 9999766 89999999999 99999999874 48887663 3459999999987655444322 4799999
Q ss_pred eccccccccCccc-ccCCCccEEEeecccccccchhcccC--------CCCCcEEecCCCCCCCcchhhhc--CCCCCCE
Q 006695 198 LSETAIQEVPSSI-ECLTNLEKLYINRCMRLKRLSTSICK--------LKSLHVLVLDDCSKLERFPEILE--KMESVKC 266 (635)
Q Consensus 198 L~~n~i~~lp~~~-~~l~~L~~L~L~~n~~~~~lp~~~~~--------l~~L~~L~Ls~n~~~~~~~~~l~--~l~~L~~ 266 (635)
|++|.++.+|..+ ..+++|+.|+|++|.+. .+|..+.. +++|+.|+|++|.+. .+|..+. .+++|+.
T Consensus 680 Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~ 757 (876)
T 4ecn_A 680 LSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSN 757 (876)
T ss_dssp CCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCE
T ss_pred ccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCE
Confidence 9999999999875 48999999999999887 56654433 239999999999877 6888887 9999999
Q ss_pred EEecCCCccccCchhcccccchhhccCCCCccEEEcCC------CC-CCcccccccCCCCccEEeccCCCCCCcCCC-CC
Q 006695 267 ISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSR------ND-SESLPASITQLSQLRSLHLKDCSMLSSLPE-LP 338 (635)
Q Consensus 267 L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~------n~-~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~-l~ 338 (635)
|+|++|.++.+|..+. .+++|+.|+|++ |+ .+.+|..+.++++|+.|+|++|++ +.+|. ..
T Consensus 758 L~Ls~N~L~~lp~~l~----------~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 758 MDVSYNCFSSFPTQPL----------NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp EECCSSCCSSCCCGGG----------GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred EEeCCCCCCccchhhh----------cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence 9999999999987764 458899999987 44 467898999999999999999988 88887 56
Q ss_pred CccceecccccccccccCccccCccccchhhhhhhhhcccccccCCccceEEEcCCcccc
Q 006695 339 QSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLKLN 398 (635)
Q Consensus 339 ~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~~~~l~~~~~~l~~~nC~~L~ 398 (635)
++|+.|++++|+....-+..+.....+..+.|.+|+ ...+.+|+.|+
T Consensus 827 ~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~-------------~~~I~gC~~L~ 873 (876)
T 4ecn_A 827 PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK-------------TQDIRGCDALG 873 (876)
T ss_dssp SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT-------------TSEEESCGGGC
T ss_pred CCCCEEECCCCCCCccChHHccccccchheeecCCC-------------ccccCCCCCcc
Confidence 899999999999776655555444344444443332 23567888774
No 12
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=318.43 Aligned_cols=372 Identities=14% Similarity=0.128 Sum_probs=233.7
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceE
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVK 81 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~ 81 (635)
+||+++|.+..+.+.+|.++++|++|++++|.+++ ..|..+..+++ |++|++++|.++.+|.. .+++|++
T Consensus 25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~-L~~L~Ls~N~l~~lp~~-~l~~L~~ 94 (520)
T 2z7x_B 25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQY--------LDISVFKFNQE-LEYLDLSHNKLVKISCH-PTVNLKH 94 (520)
T ss_dssp EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE--------EEGGGGTTCTT-CCEEECCSSCCCEEECC-CCCCCSE
T ss_pred EEECCCCcccccChhhccccccccEEecCCCccCC--------cChHHhhcccC-CCEEecCCCceeecCcc-ccCCccE
Confidence 35555555555555555555555555555555541 11334444433 55555555555555555 5555555
Q ss_pred EEcCCCCCcc--ccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCC--CEEeecCCCC--CcccCccccCCC-CCCEEee
Q 006695 82 LNLPYSKVVQ--IWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNL--ERTNLKNCIN--LTCVPSSVQNFN-HLSMLCF 154 (635)
Q Consensus 82 L~L~~n~l~~--l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L--~~L~L~~n~~--l~~~~~~i~~l~-~L~~L~L 154 (635)
|++++|.++. +|..++.+++|++|++++|.+.. .++..+++| +.|++++|.. .+..|..+..+. +...+++
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred EeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 5555555553 33455555555555555555432 223444444 5555555544 333343333322 1112222
Q ss_pred cCCCCCCccCCCC--CCCCCcEEecCCCC-------------------CCCcc---------------Cc--ccCCcceE
Q 006695 155 EGCKSLRSFPSNL--HFMSPIKIDFSSCF-------------------NLTEF---------------PQ--ISGNITDL 196 (635)
Q Consensus 155 ~~~~~l~~lp~~~--~l~~L~~L~l~~c~-------------------~l~~~---------------p~--~~~~L~~L 196 (635)
++|.....++... .+++|+.+++++|. .++.+ +. ...+|++|
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 2222222222211 34555555555442 00000 00 01378888
Q ss_pred Eecccccc-ccCccc-----ccCCCccEEEeecccccccch-hc-------------------------ccCCCCCcEEe
Q 006695 197 ILSETAIQ-EVPSSI-----ECLTNLEKLYINRCMRLKRLS-TS-------------------------ICKLKSLHVLV 244 (635)
Q Consensus 197 ~L~~n~i~-~lp~~~-----~~l~~L~~L~L~~n~~~~~lp-~~-------------------------~~~l~~L~~L~ 244 (635)
++++|.++ .+|..+ +.+++|+.+++++|.+ .+| .. +..+++|++|+
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 330 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEE
T ss_pred EeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEE
Confidence 88888887 677776 7777777777777665 233 11 15788999999
Q ss_pred cCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCc-cccc-ccCCCCccE
Q 006695 245 LDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSES-LPAS-ITQLSQLRS 322 (635)
Q Consensus 245 Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~-lp~~-l~~l~~L~~ 322 (635)
+++|.+.+..|..++.+++|+.|++++|.++.++. ++..+..+++|++|++++|.+.. +|.. +..+++|++
T Consensus 331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-------~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSK-------IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH-------HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred eECCccChhhhhhhccCCCCCEEEccCCccCcccc-------chHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 99999998889999999999999999999986543 22334667999999999999987 8876 788999999
Q ss_pred EeccCCCCCCcCCCCC-CccceecccccccccccCccccCccccchhhhhhhhhcccccc-c--CCccceEEEcCCc
Q 006695 323 LHLKDCSMLSSLPELP-QSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFT-L--NSACVKFVFSNCL 395 (635)
Q Consensus 323 L~L~~n~~l~~lp~l~-~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~~~~-l--~~~~~~l~~~nC~ 395 (635)
|++++|++.+.+|... ++|+.|++++|... .+|..+..+++|+.+++++|++...... + ....+.+++.+++
T Consensus 404 L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 404 LNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp EECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCC
Confidence 9999999988887654 79999999999654 7888888999999999999998865432 2 1223677777764
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=322.40 Aligned_cols=368 Identities=18% Similarity=0.166 Sum_probs=222.4
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeec-CCcccCCCccceEeecCCCCCCCC-CCCC-CCCC
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHL-DQGLEYLPNELRYLHWHEYPSKAL-PFDF-EPEN 78 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~~l~~l~~~L~~L~l~~~~l~~l-p~~~-~l~~ 78 (635)
.|||++|.+..+.+.+|.++++|++|++++|... ..+ +..+..+++ |++|++++|.+..+ |..| .+++
T Consensus 28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~--------~~i~~~~f~~L~~-L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP--------LTIDKEAFRNLPN-LRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp EEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC--------CEECTTTTSSCTT-CCEEECTTCCCCEECTTSSCSCSS
T ss_pred EEECCCCcCCccChhHCcccccCeEEeCCCCCCc--------cccCHHHhcCCCC-CCEEECCCCcCcccCHhHccCCcc
Confidence 6899999999999999999999999999998543 134 566777765 99999999999887 5556 7999
Q ss_pred ceEEEcCCCCCcc-cccc--CCCCCCCcEEEccCCCCCCCCC--CCCCCCCCCEEeecCCCCCcccCccccCC--CCCCE
Q 006695 79 LVKLNLPYSKVVQ-IWEG--KKRAFKLKYVDIHNSQYLIRMP--DLSETPNLERTNLKNCINLTCVPSSVQNF--NHLSM 151 (635)
Q Consensus 79 L~~L~L~~n~l~~-l~~~--~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~n~~l~~~~~~i~~l--~~L~~ 151 (635)
|++|+|++|.+.. ++.. +.++++|++|+|++|.+....+ .++++++|++|+|++|...+..+..++.+ ++|+.
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~ 178 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence 9999999999985 4544 8899999999999999876654 48999999999999997777666666665 66777
Q ss_pred EeecCCCCCCccCCCC-C------CCCCcEEecCCCCCCCccCc------------------------------------
Q 006695 152 LCFEGCKSLRSFPSNL-H------FMSPIKIDFSSCFNLTEFPQ------------------------------------ 188 (635)
Q Consensus 152 L~L~~~~~l~~lp~~~-~------l~~L~~L~l~~c~~l~~~p~------------------------------------ 188 (635)
|++++|......|..+ . ..+|+.|++++|......+.
T Consensus 179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~ 258 (844)
T 3j0a_A 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258 (844)
T ss_dssp CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence 7766665544443322 1 12355666655421110000
Q ss_pred -----ccCCcceEEeccccccccC-cccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCC
Q 006695 189 -----ISGNITDLILSETAIQEVP-SSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKME 262 (635)
Q Consensus 189 -----~~~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~ 262 (635)
...+|+.|++++|.+..++ ..+..+++|+.|+|++|.+.+..|..|.++++|++|+|++|.+.+..+..+..++
T Consensus 259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 338 (844)
T 3j0a_A 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338 (844)
T ss_dssp TTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred hhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence 0134555555555555442 3345555555555555555544455555555555555555554444444555555
Q ss_pred CCCEEEecCCCccccCc-hhcccccchhhcc---------CCCCccEEEcCCC--------------------CCCcccc
Q 006695 263 SVKCISLERTAITELPS-SFANLEGLKDLYI---------GGSSLRQLNLSRN--------------------DSESLPA 312 (635)
Q Consensus 263 ~L~~L~L~~n~l~~lp~-~~~~l~~L~~l~~---------~~~~L~~L~Ls~n--------------------~~~~lp~ 312 (635)
+|+.|++++|.++.++. .+..+++|+.+.. .+++|+.|++++| +++.++.
T Consensus 339 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~ 418 (844)
T 3j0a_A 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDI 418 (844)
T ss_dssp TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTT
T ss_pred CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCch
Confidence 55555555555544432 2333332222211 1123333333333 3333221
Q ss_pred --cccCCCCccEEeccCCCCCCcCC----CCCCccceecccccccc-----cccCccccCccccchhhhhhhhhccc
Q 006695 313 --SITQLSQLRSLHLKDCSMLSSLP----ELPQSLELLDAENCKQL-----QFIPEILSGLEEVDASVLEKATFLNS 378 (635)
Q Consensus 313 --~l~~l~~L~~L~L~~n~~l~~lp----~l~~sL~~L~l~~c~~l-----~~~~~~~~~L~~L~~l~L~~n~~~~~ 378 (635)
.+..+++|++|+|++|++.+..+ ..+++|+.|++++|... ...+..+..+++|+.|+|++|.+...
T Consensus 419 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 495 (844)
T 3j0a_A 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495 (844)
T ss_dssp HHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTC
T ss_pred hhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCccccc
Confidence 13466777777777766653322 22356666666666543 22233455566666666666655544
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-33 Score=312.06 Aligned_cols=381 Identities=19% Similarity=0.212 Sum_probs=268.7
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeec-CCcccCCCccceEeecCCCCCCCCCCC-C-CCCC
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHL-DQGLEYLPNELRYLHWHEYPSKALPFD-F-EPEN 78 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~ 78 (635)
.||+++|.+..+.+.+|.++++|++|++++|.++ .+ +..+..+++ |++|++++|.+..+|.. | .+++
T Consensus 32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~---------~i~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---------TIEDGAYQSLSH-LSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC---------EECTTTTTTCTT-CCEEECTTCCCCEECTTTTTTCTT
T ss_pred EEEccCCccCccChhHhhCCCCceEEECCCCcCC---------ccCcccccCchh-CCEEeCcCCcCCccCHhhhcCccc
Confidence 6899999999999999999999999999999887 33 345666655 99999999999988854 6 7999
Q ss_pred ceEEEcCCCCCccccc-cCCCCCCCcEEEccCCCCCC-CCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCC----CE
Q 006695 79 LVKLNLPYSKVVQIWE-GKKRAFKLKYVDIHNSQYLI-RMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHL----SM 151 (635)
Q Consensus 79 L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~n~~~~-~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L----~~ 151 (635)
|++|++++|+++.++. .+..+++|++|++++|.+.. .+| .++++++|++|++++|......+..++.+++| +.
T Consensus 102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (570)
T ss_dssp CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCE
T ss_pred cccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhh
Confidence 9999999999999876 58999999999999998765 456 48999999999999997777767778888888 88
Q ss_pred EeecCCCCCCccCCCCCCCCCcEEecCCCCCC------------------------------------------------
Q 006695 152 LCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNL------------------------------------------------ 183 (635)
Q Consensus 152 L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l------------------------------------------------ 183 (635)
|++++|......+..+...+|+.|+++++..-
T Consensus 182 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 261 (570)
T 2z63_A 182 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261 (570)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEE
T ss_pred cccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhh
Confidence 99988776555555555556777766554100
Q ss_pred ----------CccCc---ccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhc-----------------
Q 006695 184 ----------TEFPQ---ISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTS----------------- 233 (635)
Q Consensus 184 ----------~~~p~---~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~----------------- 233 (635)
...+. ..++|++|++++|.++++|..+..+ +|++|++++|.+. .+|..
T Consensus 262 l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCC
T ss_pred hhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcccc
Confidence 00111 1246777777777777777666655 6666666665544 22211
Q ss_pred ---ccCCCCCcEEecCCCCCCCcc--hhhhcCCCCCCEEEecCCCccccCchhcccccchh---------------hccC
Q 006695 234 ---ICKLKSLHVLVLDDCSKLERF--PEILEKMESVKCISLERTAITELPSSFANLEGLKD---------------LYIG 293 (635)
Q Consensus 234 ---~~~l~~L~~L~Ls~n~~~~~~--~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~---------------l~~~ 293 (635)
...+++|++|++++|.+.+.. +..+..+++|+.|++++|.++.+|..+..+++|+. .+..
T Consensus 340 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 419 (570)
T 2z63_A 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419 (570)
T ss_dssp BCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred ccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhc
Confidence 145677777777777765543 66777788888888888887777665555444322 2344
Q ss_pred CCCccEEEcCCCCCCc-ccccccCCCCccEEeccCCCCC-CcCCCC---CCccceecccccccccccCccccCccccchh
Q 006695 294 GSSLRQLNLSRNDSES-LPASITQLSQLRSLHLKDCSML-SSLPEL---PQSLELLDAENCKQLQFIPEILSGLEEVDAS 368 (635)
Q Consensus 294 ~~~L~~L~Ls~n~~~~-lp~~l~~l~~L~~L~L~~n~~l-~~lp~l---~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l 368 (635)
+++|++|++++|.+.. .|..+..+++|++|++++|.+. +.+|.. +++|+.|++++|......|..+..+++|+.+
T Consensus 420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 5677777777777654 3445677777777777777665 355542 4677777777777666667777777777777
Q ss_pred hhhhhhhcccccc---cCCccceEEEcCC
Q 006695 369 VLEKATFLNSAFT---LNSACVKFVFSNC 394 (635)
Q Consensus 369 ~L~~n~~~~~~~~---l~~~~~~l~~~nC 394 (635)
++++|.+...... -....+.+++.++
T Consensus 500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence 7777766654221 1112255566554
No 15
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6e-32 Score=309.28 Aligned_cols=365 Identities=18% Similarity=0.160 Sum_probs=274.6
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCc
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENL 79 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L 79 (635)
+||+++|.+..+.+.+|.++++|++|++++|.++++ .+..+..+++ |++|++++|.+..+|.. | .+++|
T Consensus 29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--------~~~~~~~l~~-L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL--------EPELCQKLPM-LKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC--------CTTHHHHCTT-CCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc--------CHHHHhcccC-cCEEECCCCccCccChhhhccCCCC
Confidence 689999999999999999999999999999988732 2455566655 99999999999999985 6 79999
Q ss_pred eEEEcCCCCCcccc-ccCCCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCCCCcccCcccc--CCCCCCEEeec
Q 006695 80 VKLNLPYSKVVQIW-EGKKRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCINLTCVPSSVQ--NFNHLSMLCFE 155 (635)
Q Consensus 80 ~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~l~~~~~~i~--~l~~L~~L~L~ 155 (635)
++|++++|+++.++ ..+..+++|++|+|++|.+....|. ++++++|++|++++|...+..+..+. .+++|+.|+++
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~ 179 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS 179 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECC
Confidence 99999999999887 5689999999999999998776664 88999999999999976665555443 56899999999
Q ss_pred CCCCCCccCCCC-C---------------------------CCCCcEEecCCCCCCCccCccc-----CCcceEEecccc
Q 006695 156 GCKSLRSFPSNL-H---------------------------FMSPIKIDFSSCFNLTEFPQIS-----GNITDLILSETA 202 (635)
Q Consensus 156 ~~~~l~~lp~~~-~---------------------------l~~L~~L~l~~c~~l~~~p~~~-----~~L~~L~L~~n~ 202 (635)
+|......|..+ . .++|+.|+++++......|..+ ++|++|++++|.
T Consensus 180 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~ 259 (680)
T 1ziw_A 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259 (680)
T ss_dssp TCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred CCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence 986554444332 1 2567788888765444444333 349999999999
Q ss_pred ccccC-cccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCC-----cchh----hhcCCCCCCEEEecCC
Q 006695 203 IQEVP-SSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLE-----RFPE----ILEKMESVKCISLERT 272 (635)
Q Consensus 203 i~~lp-~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~-----~~~~----~l~~l~~L~~L~L~~n 272 (635)
++.++ ..++.+++|++|++++|.+.+..|..+.++++|+.|++++|...+ .+|. .+..+++|++|++++|
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n 339 (680)
T 1ziw_A 260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339 (680)
T ss_dssp CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC
T ss_pred cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC
Confidence 98875 568899999999999999888888888888888888888764432 2332 5777888888888888
Q ss_pred CccccC-chhcccccchhhccC------------------CCCccEEEcCCCCCCcc-cccccCCCCccEEeccCCCCCC
Q 006695 273 AITELP-SSFANLEGLKDLYIG------------------GSSLRQLNLSRNDSESL-PASITQLSQLRSLHLKDCSMLS 332 (635)
Q Consensus 273 ~l~~lp-~~~~~l~~L~~l~~~------------------~~~L~~L~Ls~n~~~~l-p~~l~~l~~L~~L~L~~n~~l~ 332 (635)
.++.++ ..+..+++|+.+... .++|+.|++++|++..+ |..+..+++|+.|++++|.+.+
T Consensus 340 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 419 (680)
T 1ziw_A 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419 (680)
T ss_dssp CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE
T ss_pred ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc
Confidence 888664 345666665544332 14688888888887766 4457788888888888887776
Q ss_pred cCCC----CCCccceecccccccccccCccccCccccchhhhhhhhh
Q 006695 333 SLPE----LPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATF 375 (635)
Q Consensus 333 ~lp~----l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~ 375 (635)
.+|. ..++|++|++++|......+..+..+++|+.+++++|.+
T Consensus 420 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l 466 (680)
T 1ziw_A 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466 (680)
T ss_dssp ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCC
T ss_pred ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccc
Confidence 6653 346777777777765544444555555555555555544
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-32 Score=304.93 Aligned_cols=355 Identities=17% Similarity=0.147 Sum_probs=253.8
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCc
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENL 79 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L 79 (635)
+||+++|++..+.+.+|+++++|++|++++|.++.+ .+..+..+++ |++|++++|.+..+|.. + .+++|
T Consensus 56 ~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~~~l~~-L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL--------ALGAFSGLSS-LQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE--------CTTTTTTCTT-CCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred EEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc--------CHhhhcCccc-cccccccccccccCCCccccccccc
Confidence 689999999999999999999999999999988722 1355666655 99999999999988874 4 78999
Q ss_pred eEEEcCCCCCcc--ccccCCCCCCCcEEEccCCCCCCCCC-CCCCCCC---------------------------CCEEe
Q 006695 80 VKLNLPYSKVVQ--IWEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPN---------------------------LERTN 129 (635)
Q Consensus 80 ~~L~L~~n~l~~--l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~---------------------------L~~L~ 129 (635)
++|++++|.++. +|..+.++++|++|++++|++....+ .++.+++ |+.|+
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~ 206 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEe
Confidence 999999999885 68888889999999999887654332 1322222 33333
Q ss_pred ecCCC----------------------------------------------------------CCcccCccccCCCCCCE
Q 006695 130 LKNCI----------------------------------------------------------NLTCVPSSVQNFNHLSM 151 (635)
Q Consensus 130 L~~n~----------------------------------------------------------~l~~~~~~i~~l~~L~~ 151 (635)
+++|. ..+.++..+..+++|+.
T Consensus 207 l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~ 286 (570)
T 2z63_A 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286 (570)
T ss_dssp EESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSE
T ss_pred cccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccE
Confidence 33320 01112233455566777
Q ss_pred EeecCCCCCCccCCCC-CCCCCcEEecCCC---------------------CCCCccC-cccCCcceEEecccccccc--
Q 006695 152 LCFEGCKSLRSFPSNL-HFMSPIKIDFSSC---------------------FNLTEFP-QISGNITDLILSETAIQEV-- 206 (635)
Q Consensus 152 L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c---------------------~~l~~~p-~~~~~L~~L~L~~n~i~~l-- 206 (635)
|++++|.. ..+|..+ .+ +|+.|++++| .....++ ..+++|++|++++|.++.+
T Consensus 287 L~l~~~~l-~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 364 (570)
T 2z63_A 287 FSLVSVTI-ERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364 (570)
T ss_dssp EEEESCEE-CSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred EEecCccc-hhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccc
Confidence 77766543 3444443 23 5555555554 3222222 2345677777777776655
Q ss_pred -CcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcch-hhhcCCCCCCEEEecCCCccccCchhccc
Q 006695 207 -PSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFP-EILEKMESVKCISLERTAITELPSSFANL 284 (635)
Q Consensus 207 -p~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~lp~~~~~l 284 (635)
|..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.++..+.
T Consensus 365 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----- 438 (570)
T 2z63_A 365 CSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN----- 438 (570)
T ss_dssp EEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT-----
T ss_pred ccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch-----
Confidence 45566777777777777766554443 7777777777777777666544 456777777777777777765432
Q ss_pred ccchhhccCCCCccEEEcCCCCCC--cccccccCCCCccEEeccCCCCCCcCCCC---CCccceecccccccccccCccc
Q 006695 285 EGLKDLYIGGSSLRQLNLSRNDSE--SLPASITQLSQLRSLHLKDCSMLSSLPEL---PQSLELLDAENCKQLQFIPEIL 359 (635)
Q Consensus 285 ~~L~~l~~~~~~L~~L~Ls~n~~~--~lp~~l~~l~~L~~L~L~~n~~l~~lp~l---~~sL~~L~l~~c~~l~~~~~~~ 359 (635)
..+..+++|+.|++++|.+. .+|..+..+++|++|+|++|++.+..|.. +++|++|++++|......+..+
T Consensus 439 ----~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 514 (570)
T 2z63_A 439 ----GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF 514 (570)
T ss_dssp ----TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ----hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence 22356789999999999986 68989999999999999999988877753 4799999999998777777789
Q ss_pred cCccccchhhhhhhhhcc
Q 006695 360 SGLEEVDASVLEKATFLN 377 (635)
Q Consensus 360 ~~L~~L~~l~L~~n~~~~ 377 (635)
..+++|+.+++++|++.+
T Consensus 515 ~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 515 DRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTCTTCCEEECCSSCBCC
T ss_pred hcccCCcEEEecCCcccC
Confidence 999999999999998754
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1e-31 Score=314.30 Aligned_cols=368 Identities=17% Similarity=0.171 Sum_probs=278.8
Q ss_pred CeeecCCC-cccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCC-CCCC--C-C
Q 006695 1 MFLDLSKI-TSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKA-LPFD--F-E 75 (635)
Q Consensus 1 i~LdLs~n-~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~-lp~~--~-~ 75 (635)
.+|||++| .+..+.+.+|.++++|++|+|++|.+++ ..|..+..+++ |++|++++|.+.. +|.. | .
T Consensus 51 ~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~--------~~p~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~~~ 121 (844)
T 3j0a_A 51 QLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF--------LHPDAFQGLFH-LFELRLYFCGLSDAVLKDGYFRN 121 (844)
T ss_dssp SEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE--------ECTTSSCSCSS-CCCEECTTCCCSSCCSTTCCCSS
T ss_pred eEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc--------cCHhHccCCcc-cCEeeCcCCCCCcccccCccccc
Confidence 36899999 5667889999999999999999999872 23677777766 9999999999976 4554 5 7
Q ss_pred CCCceEEEcCCCCCcccc--ccCCCCCCCcEEEccCCCCCCCCC-CCCCC--CCCCEEeecCCCCCcccCccccCCCC--
Q 006695 76 PENLVKLNLPYSKVVQIW--EGKKRAFKLKYVDIHNSQYLIRMP-DLSET--PNLERTNLKNCINLTCVPSSVQNFNH-- 148 (635)
Q Consensus 76 l~~L~~L~L~~n~l~~l~--~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l--~~L~~L~L~~n~~l~~~~~~i~~l~~-- 148 (635)
+++|++|++++|.++.++ ..+.++++|++|+|++|.+....+ ++..+ ++|+.|++++|...+..|..++.+.+
T Consensus 122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 201 (844)
T 3j0a_A 122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201 (844)
T ss_dssp CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcc
Confidence 999999999999998764 468999999999999999876665 46655 88999999998887777777766655
Q ss_pred ----CCEEeecCCCCCCccCCCC---------------------------------------CCCCCcEEecCCCCCCCc
Q 006695 149 ----LSMLCFEGCKSLRSFPSNL---------------------------------------HFMSPIKIDFSSCFNLTE 185 (635)
Q Consensus 149 ----L~~L~L~~~~~l~~lp~~~---------------------------------------~l~~L~~L~l~~c~~l~~ 185 (635)
|+.|++++|......+..+ ..++|+.|++++|.....
T Consensus 202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~ 281 (844)
T 3j0a_A 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL 281 (844)
T ss_dssp TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE
T ss_pred ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc
Confidence 8999998875433222111 136788999988754443
Q ss_pred cCcc---cCCcceEEeccccccccC-cccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCC
Q 006695 186 FPQI---SGNITDLILSETAIQEVP-SSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKM 261 (635)
Q Consensus 186 ~p~~---~~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l 261 (635)
.+.. +++|+.|+|++|.++.++ ..+..+++|++|+|++|.+.+..|..+..+++|+.|++++|.+....+..+..+
T Consensus 282 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 361 (844)
T 3j0a_A 282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361 (844)
T ss_dssp CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence 3433 468899999999998874 568899999999999999888888889999999999999998877777788889
Q ss_pred CCCCEEEecCCCccccCchhccccc----------c----------------------hhhccCCCCccEEEcCCCCCCc
Q 006695 262 ESVKCISLERTAITELPSSFANLEG----------L----------------------KDLYIGGSSLRQLNLSRNDSES 309 (635)
Q Consensus 262 ~~L~~L~L~~n~l~~lp~~~~~l~~----------L----------------------~~l~~~~~~L~~L~Ls~n~~~~ 309 (635)
++|+.|++++|.++.++. +..++. + ...+..+++|+.|+|++|++..
T Consensus 362 ~~L~~L~Ls~N~l~~i~~-~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~ 440 (844)
T 3j0a_A 362 EKLQTLDLRDNALTTIHF-IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440 (844)
T ss_dssp CCCCEEEEETCCSCCCSS-CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCC
T ss_pred CCCCEEECCCCCCCcccC-CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccc
Confidence 999999999888876553 111110 0 0113367899999999999877
Q ss_pred cccc--ccCCCCccEEeccCCCCCCcC-----CC---CCCccceecccccccccccCccccCccccchhhhhhhhhccc
Q 006695 310 LPAS--ITQLSQLRSLHLKDCSMLSSL-----PE---LPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNS 378 (635)
Q Consensus 310 lp~~--l~~l~~L~~L~L~~n~~l~~l-----p~---l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~ 378 (635)
++.. +..+++|+.|+|++|.+.... +. .+++|+.|++++|......+..+..+++|+.|+|++|.+...
T Consensus 441 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l 519 (844)
T 3j0a_A 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL 519 (844)
T ss_dssp CCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSC
T ss_pred cccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCcc
Confidence 6543 456788888888887765322 11 236777777777766666666677777777777777776644
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.98 E-value=2.5e-31 Score=297.27 Aligned_cols=355 Identities=14% Similarity=0.101 Sum_probs=215.4
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceE
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVK 81 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~ 81 (635)
.||+++|.+..+.+.+|.++++|++|++++|.++++ .+..+..+++ |++|++++|.+..+|.. .+++|++
T Consensus 56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~~~~l~~-L~~L~Ls~N~l~~lp~~-~l~~L~~ 125 (562)
T 3a79_B 56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL--------DFHVFLFNQD-LEYLDVSHNRLQNISCC-PMASLRH 125 (562)
T ss_dssp EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE--------CTTTTTTCTT-CCEEECTTSCCCEECSC-CCTTCSE
T ss_pred EEECCCCCccccChhhhccCCCccEEECCCCCCCcC--------CHHHhCCCCC-CCEEECCCCcCCccCcc-ccccCCE
Confidence 577777777777777777777777777777776621 2445555554 77777777777777776 7777777
Q ss_pred EEcCCCCCcccc--ccCCCCCCCcEEEccCCCCCCCCCCCCCCCCC--CEEeecCCCC--CcccCccccC----------
Q 006695 82 LNLPYSKVVQIW--EGKKRAFKLKYVDIHNSQYLIRMPDLSETPNL--ERTNLKNCIN--LTCVPSSVQN---------- 145 (635)
Q Consensus 82 L~L~~n~l~~l~--~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L--~~L~L~~n~~--l~~~~~~i~~---------- 145 (635)
|++++|+++.++ ..+.++++|++|+|++|++.. .++..+++| +.|++++|.. .+..|..+..
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l 203 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence 777777777654 567777777777777776543 234444555 7777777765 4444444433
Q ss_pred ----------------CCCCCEEeecCCCCC--------------------------------CccCCCCCCCCCcEEec
Q 006695 146 ----------------FNHLSMLCFEGCKSL--------------------------------RSFPSNLHFMSPIKIDF 177 (635)
Q Consensus 146 ----------------l~~L~~L~L~~~~~l--------------------------------~~lp~~~~l~~L~~L~l 177 (635)
+++|+.|++++|... ..++......+|+.|++
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l 283 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence 334455555443200 00001112236777777
Q ss_pred CCCCCCCccCccc-----CCcceEEecccccc--ccCc-cccc---CCCccEEEeecccccccchhcccCCCCCcEEecC
Q 006695 178 SSCFNLTEFPQIS-----GNITDLILSETAIQ--EVPS-SIEC---LTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLD 246 (635)
Q Consensus 178 ~~c~~l~~~p~~~-----~~L~~L~L~~n~i~--~lp~-~~~~---l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls 246 (635)
++|.....+|... ++++.|.+.++... .+|. .+.. ..+|+.|++++|.+.... ....+++|++|+++
T Consensus 284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~ 361 (562)
T 3a79_B 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFT 361 (562)
T ss_dssp EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECC
T ss_pred eccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECC
Confidence 7765444566544 55555544433222 3442 2222 245777777776653221 11456677777777
Q ss_pred CCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCc-cccc-ccCCCCccEEe
Q 006695 247 DCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSES-LPAS-ITQLSQLRSLH 324 (635)
Q Consensus 247 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~-lp~~-l~~l~~L~~L~ 324 (635)
+|.+.+..|..+..+++|+.|++++|+++.++. ++..+..+++|+.|++++|.++. +|.. +..+++|++|+
T Consensus 362 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~ 434 (562)
T 3a79_B 362 QNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK-------VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434 (562)
T ss_dssp SSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH-------HHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEE
T ss_pred CCccccchhhhhcccCCCCEEECCCCCcCCccc-------chhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEE
Confidence 777766666667777777777777777765543 11223455677777777777665 6654 56667777777
Q ss_pred ccCCCCCCcCCCCC-CccceecccccccccccCccccCccccchhhhhhhhhccc
Q 006695 325 LKDCSMLSSLPELP-QSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNS 378 (635)
Q Consensus 325 L~~n~~l~~lp~l~-~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~ 378 (635)
+++|++.+.+|..+ ++|+.|++++|. ++.+|..+..+++|+.+++++|.+...
T Consensus 435 l~~n~l~~~~~~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~l~~l 488 (562)
T 3a79_B 435 LSSNMLTGSVFRCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQLKSV 488 (562)
T ss_dssp CCSSCCCGGGGSSCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSCCCCC
T ss_pred CCCCCCCcchhhhhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCCCCCC
Confidence 77777666665543 577777777764 345665555677777777777766644
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.98 E-value=4.4e-31 Score=287.31 Aligned_cols=353 Identities=14% Similarity=0.131 Sum_probs=256.3
Q ss_pred eecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCC-CCCC-CC-CCCCc
Q 006695 3 LDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSK-ALPF-DF-EPENL 79 (635)
Q Consensus 3 LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~-~lp~-~~-~l~~L 79 (635)
++.+++.+..++. + .++|++|++++|.+++ ..+..+..+++ |++|++++|.+. .+|. .| .+++|
T Consensus 15 ~~c~~~~l~~lp~--l--~~~l~~L~Ls~n~i~~--------~~~~~~~~l~~-L~~L~L~~n~~~~~i~~~~~~~l~~L 81 (455)
T 3v47_A 15 AICINRGLHQVPE--L--PAHVNYVDLSLNSIAE--------LNETSFSRLQD-LQFLKVEQQTPGLVIRNNTFRGLSSL 81 (455)
T ss_dssp EECCSSCCSSCCC--C--CTTCCEEECCSSCCCE--------ECTTTTSSCTT-CCEEECCCCSTTCEECTTTTTTCTTC
T ss_pred cCcCCCCcccCCC--C--CCccCEEEecCCccCc--------CChhHhccCcc-ccEEECcCCcccceECcccccccccC
Confidence 4566666666654 2 3778888888887772 12556666655 888888888775 5544 35 68888
Q ss_pred eEEEcCCCCCccc-cccCCCCCCCcEEEccCCCCCCCCC-C--CCCCCCCCEEeecCCCCCcccCcc-ccCCCCCCEEee
Q 006695 80 VKLNLPYSKVVQI-WEGKKRAFKLKYVDIHNSQYLIRMP-D--LSETPNLERTNLKNCINLTCVPSS-VQNFNHLSMLCF 154 (635)
Q Consensus 80 ~~L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~n~~~~~~p-~--l~~l~~L~~L~L~~n~~l~~~~~~-i~~l~~L~~L~L 154 (635)
++|++++|+++.+ |..+..+++|++|+|++|.+....+ . +..+++|++|+|++|...+..|.. ++.+++|++|++
T Consensus 82 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp CEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred CEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence 8888888888866 6678888888888888888665433 2 778888888888888766666665 788888888888
Q ss_pred cCCCCCCccCCCC---CCCCCcEEecCCCCCCCccCc-----------ccCCcceEEeccccccc-cCcccccC---CCc
Q 006695 155 EGCKSLRSFPSNL---HFMSPIKIDFSSCFNLTEFPQ-----------ISGNITDLILSETAIQE-VPSSIECL---TNL 216 (635)
Q Consensus 155 ~~~~~l~~lp~~~---~l~~L~~L~l~~c~~l~~~p~-----------~~~~L~~L~L~~n~i~~-lp~~~~~l---~~L 216 (635)
++|......+..+ ...+|+.|+++++......+. ..++|++|++++|.++. +|..+... ++|
T Consensus 162 ~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L 241 (455)
T 3v47_A 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241 (455)
T ss_dssp TTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCE
T ss_pred CCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccce
Confidence 8877655555544 336788888888653332211 12578888999888874 34444333 788
Q ss_pred cEEEeecccccccc----------hhccc--CCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhccc
Q 006695 217 EKLYINRCMRLKRL----------STSIC--KLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANL 284 (635)
Q Consensus 217 ~~L~L~~n~~~~~l----------p~~~~--~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l 284 (635)
+.|++++|...+.. +..+. ..++|+.|++++|.+.+..|..+..+++|+.|++++|.++.++..
T Consensus 242 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---- 317 (455)
T 3v47_A 242 QSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN---- 317 (455)
T ss_dssp EEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT----
T ss_pred eeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh----
Confidence 88888887654321 11121 236889999999888888888888899999999999988876431
Q ss_pred ccchhhccCCCCccEEEcCCCCCCcc-cccccCCCCccEEeccCCCCCCcCCCC---CCccceecccccccccccCcccc
Q 006695 285 EGLKDLYIGGSSLRQLNLSRNDSESL-PASITQLSQLRSLHLKDCSMLSSLPEL---PQSLELLDAENCKQLQFIPEILS 360 (635)
Q Consensus 285 ~~L~~l~~~~~~L~~L~Ls~n~~~~l-p~~l~~l~~L~~L~L~~n~~l~~lp~l---~~sL~~L~l~~c~~l~~~~~~~~ 360 (635)
.+..+++|++|+|++|.++.+ |..+..+++|++|+|++|++.+..|.. +++|++|++++|......+..+.
T Consensus 318 -----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 392 (455)
T 3v47_A 318 -----AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392 (455)
T ss_dssp -----TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred -----HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhc
Confidence 234568889999999998877 456788899999999998887666653 47889999999876665556678
Q ss_pred Cccccchhhhhhhhhcc
Q 006695 361 GLEEVDASVLEKATFLN 377 (635)
Q Consensus 361 ~L~~L~~l~L~~n~~~~ 377 (635)
.+++|+.+++++|++.+
T Consensus 393 ~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 393 RLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp TCTTCCEEECCSSCBCC
T ss_pred cCCcccEEEccCCCccc
Confidence 88899999999988754
No 20
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.98 E-value=2.4e-30 Score=296.06 Aligned_cols=389 Identities=19% Similarity=0.185 Sum_probs=221.5
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCc
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENL 79 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L 79 (635)
+||+++|.+..+.+.+|+++++|++|++++|.++.++. ..+..+++ |++|++++|.+..+|.. | .+++|
T Consensus 53 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--------~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 53 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD--------KTFAFCTN-LTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp EEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT--------TTTTTCTT-CSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred EEECCCCccCccCHHHHhcccCcCEEECCCCccCccCh--------hhhccCCC-CCEEECCCCccCccChhHccccCCC
Confidence 57777777777777777777777777777777663331 12333332 55555555555444432 3 34455
Q ss_pred eEEEcCCCCCcccc-ccCCCCCCC--------------------------cEEEccCCCCCCCCCC--------------
Q 006695 80 VKLNLPYSKVVQIW-EGKKRAFKL--------------------------KYVDIHNSQYLIRMPD-------------- 118 (635)
Q Consensus 80 ~~L~L~~n~l~~l~-~~~~~l~~L--------------------------~~L~Ls~n~~~~~~p~-------------- 118 (635)
++|++++|.+..++ ..+..+++| +.|++++|.+....|.
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 203 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECT
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcc
Confidence 55555554444332 223334444 4444444433222211
Q ss_pred --------------------------------------CCCC--CCCCEEeecCCCCCcccCccccCCCCCCEEeecCCC
Q 006695 119 --------------------------------------LSET--PNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCK 158 (635)
Q Consensus 119 --------------------------------------l~~l--~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~ 158 (635)
+..+ ++|++|++++|...+..+..++.+++|+.|++++|.
T Consensus 204 ~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (680)
T 1ziw_A 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283 (680)
T ss_dssp TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred ccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence 1111 124444554444443344445555555555555554
Q ss_pred CCCccCCCC-CCCCCcEEecCCCCCCC-----ccC-------cccCCcceEEeccccccccCc-ccccCCCccEEEeecc
Q 006695 159 SLRSFPSNL-HFMSPIKIDFSSCFNLT-----EFP-------QISGNITDLILSETAIQEVPS-SIECLTNLEKLYINRC 224 (635)
Q Consensus 159 ~l~~lp~~~-~l~~L~~L~l~~c~~l~-----~~p-------~~~~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n 224 (635)
.....|..+ .+++|+.|+++++..-. .+| ...++|++|++++|.++.++. .+.++++|++|++++|
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp BSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred cCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence 333333333 44555555554432110 111 123566777777777766543 3555555555555444
Q ss_pred ----------------------------cccccchhcccCCCCCcEEecCCCCCCCcch-hhhcCCCCCCEEEecCCCcc
Q 006695 225 ----------------------------MRLKRLSTSICKLKSLHVLVLDDCSKLERFP-EILEKMESVKCISLERTAIT 275 (635)
Q Consensus 225 ----------------------------~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~ 275 (635)
.+.+..|..+..+++|+.|++++|.+.+.+| ..+..+++|++|++++|.++
T Consensus 364 ~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 443 (680)
T 1ziw_A 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443 (680)
T ss_dssp BSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE
T ss_pred chhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc
Confidence 3444445566667777777777776665444 56667777777777777766
Q ss_pred ccC-chhcccccc----------------hhhccCCCCccEEEcCCCCCCccccc-ccCCCCccEEeccCCCCCCc----
Q 006695 276 ELP-SSFANLEGL----------------KDLYIGGSSLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSMLSS---- 333 (635)
Q Consensus 276 ~lp-~~~~~l~~L----------------~~l~~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~l~~---- 333 (635)
.++ ..+..++.| +..+..+++|+.|++++|+++.+|.. +.++++|++|++++|++.+.
T Consensus 444 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 523 (680)
T 1ziw_A 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA 523 (680)
T ss_dssp ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTT
T ss_pred eeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhh
Confidence 443 233333322 33445668889999999998888754 78889999999998876543
Q ss_pred CC-------CCCCccceecccccccccccCccccCccccchhhhhhhhhccccccc---CCccceEEEcCCcccchh
Q 006695 334 LP-------ELPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFTL---NSACVKFVFSNCLKLNEK 400 (635)
Q Consensus 334 lp-------~l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~~~~l---~~~~~~l~~~nC~~L~~~ 400 (635)
+| ...++|+.|++++|......+..+..+++|+.++|++|.+....... ....+.+++.++ +++..
T Consensus 524 ~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~ 599 (680)
T 1ziw_A 524 NPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LITSV 599 (680)
T ss_dssp STTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS-CCCBC
T ss_pred ccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC-cCCcc
Confidence 12 12478899999998766444456888999999999999887653321 223367777777 45443
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=3.9e-31 Score=294.73 Aligned_cols=366 Identities=15% Similarity=0.186 Sum_probs=257.3
Q ss_pred eecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCce
Q 006695 3 LDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENLV 80 (635)
Q Consensus 3 LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~ 80 (635)
.|.+++.+..++...+ ++|++|++++|.++++ .+..+..+++ |++|++++|.+..++.. | .+++|+
T Consensus 10 c~~~~~~l~~ip~~~~---~~L~~L~Ls~n~l~~~--------~~~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~l~~L~ 77 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT---AAMKSLDLSFNKITYI--------GHGDLRACAN-LQVLILKSSRINTIEGDAFYSLGSLE 77 (549)
T ss_dssp EECTTSCCSSCCSCCC---TTCCEEECCSSCCCEE--------CSSTTSSCTT-CCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred EECCCCccccccccCC---CCccEEECcCCccCcc--------ChhhhhcCCc-ccEEECCCCCcCccChhhccccccCC
Confidence 5778888888877543 7899999999998722 2456777765 99999999999998854 5 799999
Q ss_pred EEEcCCCCCcccccc-CCCCCCCcEEEccCCCCCC-CCC-CCCCCCCCCEEeecCCCCCcccC-ccccCCCCCCEEeecC
Q 006695 81 KLNLPYSKVVQIWEG-KKRAFKLKYVDIHNSQYLI-RMP-DLSETPNLERTNLKNCINLTCVP-SSVQNFNHLSMLCFEG 156 (635)
Q Consensus 81 ~L~L~~n~l~~l~~~-~~~l~~L~~L~Ls~n~~~~-~~p-~l~~l~~L~~L~L~~n~~l~~~~-~~i~~l~~L~~L~L~~ 156 (635)
+|++++|+++.++.. +..+++|++|+|++|.+.. ..| .++++++|++|++++|...+.+| ..++.+++|++|++++
T Consensus 78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence 999999999988765 8999999999999999765 334 59999999999999998677776 5799999999999999
Q ss_pred CCCCCccCCCC-CCCCCcEEecCCCCCCCccCc----ccCCcceEEeccccccccC------------------------
Q 006695 157 CKSLRSFPSNL-HFMSPIKIDFSSCFNLTEFPQ----ISGNITDLILSETAIQEVP------------------------ 207 (635)
Q Consensus 157 ~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~p~----~~~~L~~L~L~~n~i~~lp------------------------ 207 (635)
|......|..+ .+++|+.|+++++.. ..+|. .+++|++|++++|.++.++
T Consensus 158 n~l~~~~~~~l~~l~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 236 (549)
T 2z81_A 158 LSLRNYQSQSLKSIRDIHHLTLHLSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236 (549)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSBS-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEE
T ss_pred CcccccChhhhhccccCceEecccCcc-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccc
Confidence 88776666655 555566666555432 22221 1234455555554444321
Q ss_pred --------cccccC-----------------------------------------------------------CCccEEE
Q 006695 208 --------SSIECL-----------------------------------------------------------TNLEKLY 220 (635)
Q Consensus 208 --------~~~~~l-----------------------------------------------------------~~L~~L~ 220 (635)
..+..+ ++|+.|+
T Consensus 237 ~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~ 316 (549)
T 2z81_A 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316 (549)
T ss_dssp HHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEE
T ss_pred hhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEE
Confidence 011112 2344444
Q ss_pred eecccccccchhcc-cCCCCCcEEecCCCCCCCcchh---hhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCC
Q 006695 221 INRCMRLKRLSTSI-CKLKSLHVLVLDDCSKLERFPE---ILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSS 296 (635)
Q Consensus 221 L~~n~~~~~lp~~~-~~l~~L~~L~Ls~n~~~~~~~~---~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~ 296 (635)
+++|.+. .+|..+ ..+++|++|++++|.+.+.+|. .++.+++|+.|++++|.++.++.. ...+..+++
T Consensus 317 l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------~~~~~~l~~ 388 (549)
T 2z81_A 317 VENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT-------GEILLTLKN 388 (549)
T ss_dssp EESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHH-------HHHGGGCTT
T ss_pred eccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccc-------hhhhhcCCC
Confidence 4444432 334333 3577777777777777665543 256677777777777777765421 012455688
Q ss_pred ccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCC-CCCccceecccccccccccCccccCccccchhhhhhhhh
Q 006695 297 LRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE-LPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATF 375 (635)
Q Consensus 297 L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~-l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~ 375 (635)
|++|++++|+++.+|..+..+++|++|++++|.+. .+|. .+++|+.|++++|...+. ...+++|+.|+|++|++
T Consensus 389 L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l 463 (549)
T 2z81_A 389 LTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKL 463 (549)
T ss_dssp CCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCC
T ss_pred CCEEECCCCCCccCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCChhhh----cccCChhcEEECCCCcc
Confidence 99999999999999988889999999999998754 4444 567899999999965442 25778899999999987
Q ss_pred ccccc-ccCCccceEEEcCC
Q 006695 376 LNSAF-TLNSACVKFVFSNC 394 (635)
Q Consensus 376 ~~~~~-~l~~~~~~l~~~nC 394 (635)
..... ......+.+++.++
T Consensus 464 ~~ip~~~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 464 KTLPDASLFPVLLVMKISRN 483 (549)
T ss_dssp SSCCCGGGCTTCCEEECCSS
T ss_pred CcCCCcccCccCCEEecCCC
Confidence 64321 11122355555554
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.98 E-value=1.4e-30 Score=284.35 Aligned_cols=338 Identities=16% Similarity=0.192 Sum_probs=256.1
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceE
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVK 81 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~ 81 (635)
.|+++++.+..++ .|..+++|++|++++|.+++++ . +..+++ |++|++++|.+..++....+++|++
T Consensus 50 ~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~---------~-~~~l~~-L~~L~l~~n~l~~~~~~~~l~~L~~ 116 (466)
T 1o6v_A 50 TLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDIT---------P-LKNLTK-LVDILMNNNQIADITPLANLTNLTG 116 (466)
T ss_dssp EEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCG---------G-GTTCTT-CCEEECCSSCCCCCGGGTTCTTCCE
T ss_pred EEecCCCCCccCc--chhhhcCCCEEECCCCccCCch---------h-hhcccc-CCEEECCCCccccChhhcCCCCCCE
Confidence 5778888777764 3788888888888888877332 2 555544 8888888888888877337888888
Q ss_pred EEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCC
Q 006695 82 LNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLR 161 (635)
Q Consensus 82 L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~ 161 (635)
|++++|.++.++. +..+++|++|++++|.+. .++.++.+++|+.|++.++ . ..++ .++.+++|+.|++++|. +.
T Consensus 117 L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~~-~-~~~~-~~~~l~~L~~L~l~~n~-l~ 190 (466)
T 1o6v_A 117 LTLFNNQITDIDP-LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQ-V-TDLK-PLANLTTLERLDISSNK-VS 190 (466)
T ss_dssp EECCSSCCCCCGG-GTTCTTCSEEEEEEEEEC-CCGGGTTCTTCSEEEEEES-C-CCCG-GGTTCTTCCEEECCSSC-CC
T ss_pred EECCCCCCCCChH-HcCCCCCCEEECCCCccC-CChhhccCCcccEeecCCc-c-cCch-hhccCCCCCEEECcCCc-CC
Confidence 8888888888765 788888888888888744 4567888888888888642 2 2232 38888889999988876 44
Q ss_pred ccCCCCCCCCCcEEecCCCCCCCccC-cccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCC
Q 006695 162 SFPSNLHFMSPIKIDFSSCFNLTEFP-QISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSL 240 (635)
Q Consensus 162 ~lp~~~~l~~L~~L~l~~c~~l~~~p-~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L 240 (635)
.++....+++|+.|++++|......+ ..+++|++|++++|.++.++ .+..+++|+.|++++|.+.+..+ +..+++|
T Consensus 191 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 267 (466)
T 1o6v_A 191 DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKL 267 (466)
T ss_dssp CCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred CChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCC
Confidence 45544478888888888875433333 33478888899888888874 57788889999998888776554 7788889
Q ss_pred cEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCc
Q 006695 241 HVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQL 320 (635)
Q Consensus 241 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L 320 (635)
+.|++++|.+.+..+ +..+++|+.|++++|.++.++. +..+++|+.|++++|++..++. +..+++|
T Consensus 268 ~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-----------~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L 333 (466)
T 1o6v_A 268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-----------ISNLKNLTYLTLYFNNISDISP-VSSLTKL 333 (466)
T ss_dssp SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-----------GGGCTTCSEEECCSSCCSCCGG-GGGCTTC
T ss_pred CEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-----------hcCCCCCCEEECcCCcCCCchh-hccCccC
Confidence 999998887776544 7788889999999888887654 2456888999999998887765 7788899
Q ss_pred cEEeccCCCCCCcCCC--CCCccceecccccccccccCccccCccccchhhhhhhhhccc
Q 006695 321 RSLHLKDCSMLSSLPE--LPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNS 378 (635)
Q Consensus 321 ~~L~L~~n~~l~~lp~--l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~ 378 (635)
++|++++|++.+. +. .+++|+.|++++|......| +..+++|+.+++++|++...
T Consensus 334 ~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 334 QRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CEeECCCCccCCc-hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 9999998866543 43 34788899999887766555 78888888888888877653
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=7.6e-31 Score=285.43 Aligned_cols=334 Identities=17% Similarity=0.148 Sum_probs=269.5
Q ss_pred CCccceEeecCCCCCCCCC-CCC-CCCCceEEEcCCCCCc-cc-cccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCE
Q 006695 53 LPNELRYLHWHEYPSKALP-FDF-EPENLVKLNLPYSKVV-QI-WEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLER 127 (635)
Q Consensus 53 l~~~L~~L~l~~~~l~~lp-~~~-~l~~L~~L~L~~n~l~-~l-~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~ 127 (635)
++.+|++|++++|.++.++ ..| .+++|++|++++|.+. .+ +..+..+++|++|+|++|++....| .++++++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 4467999999999999884 446 7999999999999986 55 4568999999999999999877766 5999999999
Q ss_pred EeecCCCCCcccCcc--ccCCCCCCEEeecCCCCCCccCCC-C-CCCCCcEEecCCCCCCCccCccc-----CCcceEEe
Q 006695 128 TNLKNCINLTCVPSS--VQNFNHLSMLCFEGCKSLRSFPSN-L-HFMSPIKIDFSSCFNLTEFPQIS-----GNITDLIL 198 (635)
Q Consensus 128 L~L~~n~~l~~~~~~--i~~l~~L~~L~L~~~~~l~~lp~~-~-~l~~L~~L~l~~c~~l~~~p~~~-----~~L~~L~L 198 (635)
|+|++|...+.++.. ++.+++|++|++++|......|.. + .+++|+.|++++|......+..+ .+++.|++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 999999877655555 999999999999998876666765 3 89999999999986555444433 57889999
Q ss_pred ccccccccCcc---------cccCCCccEEEeecccccccchhcccCC---CCCcEEecCCCCCCCcc----------hh
Q 006695 199 SETAIQEVPSS---------IECLTNLEKLYINRCMRLKRLSTSICKL---KSLHVLVLDDCSKLERF----------PE 256 (635)
Q Consensus 199 ~~n~i~~lp~~---------~~~l~~L~~L~L~~n~~~~~lp~~~~~l---~~L~~L~Ls~n~~~~~~----------~~ 256 (635)
++|.+..++.. +..+++|++|++++|.+.+..|..+... ++|+.|++++|...+.. +.
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 99999987643 3466899999999999998888776553 89999999998655421 11
Q ss_pred hhc--CCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccc-ccccCCCCccEEeccCCCCCCc
Q 006695 257 ILE--KMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLP-ASITQLSQLRSLHLKDCSMLSS 333 (635)
Q Consensus 257 ~l~--~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp-~~l~~l~~L~~L~L~~n~~l~~ 333 (635)
.+. ..++|+.|++++|.++.++.. .+..+++|++|+|++|.++.++ ..+..+++|++|+|++|.+.+.
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~---------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 338 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKS---------VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI 338 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTT---------TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred ccccccccCceEEEecCccccccchh---------hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc
Confidence 222 236899999999999976432 2356689999999999998874 5789999999999999988666
Q ss_pred CCCC---CCccceecccccccccccCccccCccccchhhhhhhhhcccccc---cCCccceEEEcCCc
Q 006695 334 LPEL---PQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFT---LNSACVKFVFSNCL 395 (635)
Q Consensus 334 lp~l---~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~~~~---l~~~~~~l~~~nC~ 395 (635)
.|.. +++|++|++++|......|..+..+++|+.+++++|.+...... .....+.+++.+++
T Consensus 339 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 339 DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 5653 58999999999988777788999999999999999999876432 12234778887763
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=1.2e-30 Score=283.49 Aligned_cols=349 Identities=20% Similarity=0.230 Sum_probs=217.6
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEeecCCCC-CCcccceee-------------------ec----CCcccCCCccc
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHN-GVPIMISKV-------------------HL----DQGLEYLPNEL 57 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~-~~~~~~~~~-------------------~l----~~~l~~l~~~L 57 (635)
.|++++|.+..+ |.+|++|++|++|++++|.++ .+|...+.+ .+ ..++...+.+|
T Consensus 15 ~L~l~~n~l~~i-P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~~~L 93 (454)
T 1jl5_A 15 EPLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHL 93 (454)
T ss_dssp --------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCCTTC
T ss_pred hhhcccCchhhC-ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCcCCC
Confidence 467777777544 556788888877777776654 122211110 00 01111233457
Q ss_pred eEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCc
Q 006695 58 RYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLT 137 (635)
Q Consensus 58 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~ 137 (635)
++|++++|.++.+|.. +.+|++|++++|+++.++.. .++|++|++++|++.. +|+++++++|++|++++|...
T Consensus 94 ~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~l~- 166 (454)
T 1jl5_A 94 ESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLK- 166 (454)
T ss_dssp SEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCS-
T ss_pred CEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCC-CcccCCCCCCCEEECCCCcCc-
Confidence 7777777777777654 36777777777777766542 2688888888887654 778888888889988888544
Q ss_pred ccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCcc
Q 006695 138 CVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLE 217 (635)
Q Consensus 138 ~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~ 217 (635)
.+|..+ .+|++|++++|. ++.+|....+++|+.|++++| .++.+|..+.+|++|++++|.++.+|. ++.+++|+
T Consensus 167 ~lp~~~---~~L~~L~L~~n~-l~~l~~~~~l~~L~~L~l~~N-~l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~ 240 (454)
T 1jl5_A 167 KLPDLP---PSLEFIAAGNNQ-LEELPELQNLPFLTAIYADNN-SLKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLT 240 (454)
T ss_dssp CCCCCC---TTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSS-CCSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCC
T ss_pred ccCCCc---ccccEEECcCCc-CCcCccccCCCCCCEEECCCC-cCCcCCCCcCcccEEECcCCcCCcccc-cCCCCCCC
Confidence 456443 588888888875 444775458888999999886 455677777889999999999998884 88899999
Q ss_pred EEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccc-------hhh
Q 006695 218 KLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGL-------KDL 290 (635)
Q Consensus 218 ~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L-------~~l 290 (635)
+|++++|.+.+ +|. .+++|+.|++++|.+.+ +|.. +++|+.|++++|.++.+|....++..| ..
T Consensus 241 ~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~- 311 (454)
T 1jl5_A 241 TIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS- 311 (454)
T ss_dssp EEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSE-
T ss_pred EEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCc-
Confidence 99999988764 443 24788999998887665 4432 478888888888888765322222111 11
Q ss_pred ccCC-CCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCCCCCccceeccccccccc--ccCccccCc-----
Q 006695 291 YIGG-SSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQ--FIPEILSGL----- 362 (635)
Q Consensus 291 ~~~~-~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~l~~sL~~L~l~~c~~l~--~~~~~~~~L----- 362 (635)
+... ++|+.|++++|+++.+|.. +++|++|++++|.+. .+|..+++|++|++++|...+ .+|..+..+
T Consensus 312 i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~-~lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~ 387 (454)
T 1jl5_A 312 LCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLA-EVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSH 387 (454)
T ss_dssp ECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-
T ss_pred ccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCCccc-cccchhhhccEEECCCCCCCcCCCChHHHHhhhhccc
Confidence 1122 4788888888888777754 578888888887654 577777788888888887766 667777666
Q ss_pred --------cccchhhhhhhhhcc
Q 006695 363 --------EEVDASVLEKATFLN 377 (635)
Q Consensus 363 --------~~L~~l~L~~n~~~~ 377 (635)
++|+.+++++|++..
T Consensus 388 ~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 388 LAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp -----------------------
T ss_pred ccccccccCcCCEEECCCCcCCc
Confidence 678888888877764
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=9.4e-32 Score=297.82 Aligned_cols=347 Identities=17% Similarity=0.145 Sum_probs=268.1
Q ss_pred CeeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCC--CCCC-CCC
Q 006695 1 MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKAL--PFDF-EPE 77 (635)
Q Consensus 1 i~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~l--p~~~-~l~ 77 (635)
.+||+++|++..+.+.+|+++++|++|++++|.++. +|.. .++ +|++|++++|.+..+ |..| .++
T Consensus 48 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---------lp~~--~l~-~L~~L~L~~N~l~~~~~p~~~~~l~ 115 (520)
T 2z7x_B 48 RILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK---------ISCH--PTV-NLKHLDLSFNAFDALPICKEFGNMS 115 (520)
T ss_dssp CEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE---------EECC--CCC-CCSEEECCSSCCSSCCCCGGGGGCT
T ss_pred cEEecCCCccCCcChHHhhcccCCCEEecCCCceee---------cCcc--ccC-CccEEeccCCccccccchhhhccCC
Confidence 369999999999999999999999999999999883 4444 444 499999999999874 5666 799
Q ss_pred CceEEEcCCCCCccccccCCCCCCC--cEEEccCCCC--CCCCC-CC--------------------------CCCCCCC
Q 006695 78 NLVKLNLPYSKVVQIWEGKKRAFKL--KYVDIHNSQY--LIRMP-DL--------------------------SETPNLE 126 (635)
Q Consensus 78 ~L~~L~L~~n~l~~l~~~~~~l~~L--~~L~Ls~n~~--~~~~p-~l--------------------------~~l~~L~ 126 (635)
+|++|++++|.++. ..+..+++| +.|++++|.+ ....| .+ ..+++|+
T Consensus 116 ~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~ 193 (520)
T 2z7x_B 116 QLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193 (520)
T ss_dssp TCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEE
T ss_pred cceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccccee
Confidence 99999999999986 456677777 9999999987 33333 12 3466777
Q ss_pred EEeecCCC-------CCcccCccccCCC---------------------------CCCEEeecCCCCCCccCCCC-----
Q 006695 127 RTNLKNCI-------NLTCVPSSVQNFN---------------------------HLSMLCFEGCKSLRSFPSNL----- 167 (635)
Q Consensus 127 ~L~L~~n~-------~l~~~~~~i~~l~---------------------------~L~~L~L~~~~~l~~lp~~~----- 167 (635)
.|++++|. ..+.++ .++.++ +|+.|++++|+..+.+|..+
T Consensus 194 ~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 272 (520)
T 2z7x_B 194 LSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG 272 (520)
T ss_dssp ECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCS
T ss_pred eccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhccc
Confidence 77777764 222222 344444 55555555555444555543
Q ss_pred -CCCCCcEEecCCCCCCCccCc-cc------CCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCC
Q 006695 168 -HFMSPIKIDFSSCFNLTEFPQ-IS------GNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKS 239 (635)
Q Consensus 168 -~l~~L~~L~l~~c~~l~~~p~-~~------~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~ 239 (635)
.++.|+.++++++.. .+|. .+ .+|+.|++++|.+..++. ...+++|++|++++|.+.+..|..++.+++
T Consensus 273 ~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 349 (520)
T 2z7x_B 273 TSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTE 349 (520)
T ss_dssp CCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSS
T ss_pred ccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhhhccCCC
Confidence 466677777776544 4441 11 458889999888876642 268899999999999999989999999999
Q ss_pred CcEEecCCCCCCC--cchhhhcCCCCCCEEEecCCCccc-cCchhcccccchhhccCCCCccEEEcCCCCCC-ccccccc
Q 006695 240 LHVLVLDDCSKLE--RFPEILEKMESVKCISLERTAITE-LPSSFANLEGLKDLYIGGSSLRQLNLSRNDSE-SLPASIT 315 (635)
Q Consensus 240 L~~L~Ls~n~~~~--~~~~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~-~lp~~l~ 315 (635)
|++|++++|.+.+ .+|..+..+++|+.|++++|.++. +|... +..+++|++|++++|.++ .+|..+.
T Consensus 350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~---------~~~l~~L~~L~Ls~N~l~~~~~~~l~ 420 (520)
T 2z7x_B 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD---------CSWTKSLLSLNMSSNILTDTIFRCLP 420 (520)
T ss_dssp CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS---------CCCCTTCCEEECCSSCCCGGGGGSCC
T ss_pred CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch---------hccCccCCEEECcCCCCCcchhhhhc
Confidence 9999999999887 677889999999999999999997 87641 345689999999999984 5555543
Q ss_pred CCCCccEEeccCCCCCCcCCC---CCCccceecccccccccccCcc-ccCccccchhhhhhhhhccc
Q 006695 316 QLSQLRSLHLKDCSMLSSLPE---LPQSLELLDAENCKQLQFIPEI-LSGLEEVDASVLEKATFLNS 378 (635)
Q Consensus 316 ~l~~L~~L~L~~n~~l~~lp~---l~~sL~~L~l~~c~~l~~~~~~-~~~L~~L~~l~L~~n~~~~~ 378 (635)
++|++|++++|++. .+|. .+++|++|++++|... .+|.. +..+++|+.+++++|++.+.
T Consensus 421 --~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 421 --PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp --TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred --ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCccc
Confidence 79999999998776 7776 3589999999999755 56665 88999999999999988653
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.4e-30 Score=291.34 Aligned_cols=360 Identities=13% Similarity=0.115 Sum_probs=243.1
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCC-CC-CCCCc
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPF-DF-EPENL 79 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L 79 (635)
++|++++++..++...+ ++|+.|++++|.+++++ +..+..+++ |++|++++|.+..++. .| .+++|
T Consensus 35 ~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~~~~--------~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L 102 (562)
T 3a79_B 35 MVDYSNRNLTHVPKDLP---PRTKALSLSQNSISELR--------MPDISFLSE-LRVLRLSHNRIRSLDFHVFLFNQDL 102 (562)
T ss_dssp EEECTTSCCCSCCTTSC---TTCCEEECCSSCCCCCC--------GGGTTTCTT-CCEEECCSCCCCEECTTTTTTCTTC
T ss_pred EEEcCCCCCccCCCCCC---CCcCEEECCCCCccccC--------hhhhccCCC-ccEEECCCCCCCcCCHHHhCCCCCC
Confidence 58899998888776543 78999999999887332 356666665 9999999999988854 46 78999
Q ss_pred eEEEcCCCCCccccccCCCCCCCcEEEccCCCCCC-CCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCC--CEEeec
Q 006695 80 VKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLI-RMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHL--SMLCFE 155 (635)
Q Consensus 80 ~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~-~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L--~~L~L~ 155 (635)
++|++++|+++.+|.. .+++|++|+|++|++.. ..| .++++++|++|++++|.... ..+..+++| +.|+++
T Consensus 103 ~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 103 EYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLD 177 (562)
T ss_dssp CEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEE
T ss_pred CEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEee
Confidence 9999999999998877 78999999999998765 234 58889999999999986554 345556666 999998
Q ss_pred CCCC--CCccCCCC---------------------------CCCCCcEEecCCCCCC-CccC------ccc---------
Q 006695 156 GCKS--LRSFPSNL---------------------------HFMSPIKIDFSSCFNL-TEFP------QIS--------- 190 (635)
Q Consensus 156 ~~~~--l~~lp~~~---------------------------~l~~L~~L~l~~c~~l-~~~p------~~~--------- 190 (635)
+|.. ....|..+ .+++|+.++++++... ..++ ...
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence 8876 44444333 1233444444443100 0000 000
Q ss_pred ------------------CCcceEEecccccc-ccCccc-----ccCCCccEEEeecccccccch-hccc---CCCCCcE
Q 006695 191 ------------------GNITDLILSETAIQ-EVPSSI-----ECLTNLEKLYINRCMRLKRLS-TSIC---KLKSLHV 242 (635)
Q Consensus 191 ------------------~~L~~L~L~~n~i~-~lp~~~-----~~l~~L~~L~L~~n~~~~~lp-~~~~---~l~~L~~ 242 (635)
.+|++|++++|.++ .+|..+ ..++.|+.+++..+.+ .+| ..+. ...+|++
T Consensus 258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~ 335 (562)
T 3a79_B 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKM 335 (562)
T ss_dssp EEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSE
T ss_pred CCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceE
Confidence 13444444444443 344333 3333333333333332 111 1111 1145777
Q ss_pred EecCCCCCCCcchhhhcCCCCCCEEEecCCCccc-cCchhcccccchhhccCCCCccEEEcCCCCCCccc---ccccCCC
Q 006695 243 LVLDDCSKLERFPEILEKMESVKCISLERTAITE-LPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLP---ASITQLS 318 (635)
Q Consensus 243 L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp---~~l~~l~ 318 (635)
|++++|.+.... ....+++|++|++++|.++. +|..+ ..+++|+.|++++|+++.++ ..+..++
T Consensus 336 L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~----------~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~ 403 (562)
T 3a79_B 336 LSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGC----------STLKRLQTLILQRNGLKNFFKVALMTKNMS 403 (562)
T ss_dssp EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC----------CSCSSCCEEECCSSCCCBTTHHHHTTTTCT
T ss_pred EEccCCCccccc--CccCCCCceEEECCCCccccchhhhh----------cccCCCCEEECCCCCcCCcccchhhhcCCC
Confidence 777776654322 12678999999999999996 45544 55689999999999998765 5689999
Q ss_pred CccEEeccCCCCCCcCCC----CCCccceecccccccccccCccccCccccchhhhhhhhhcccccccC--CccceEEEc
Q 006695 319 QLRSLHLKDCSMLSSLPE----LPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFTLN--SACVKFVFS 392 (635)
Q Consensus 319 ~L~~L~L~~n~~l~~lp~----l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~~~~l~--~~~~~l~~~ 392 (635)
+|++|++++|++.+.+|. .+++|+.|++++|...+.++..+. ++|+.|++++|.+........ ...+.+++.
T Consensus 404 ~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~ 481 (562)
T 3a79_B 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVA 481 (562)
T ss_dssp TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECC
T ss_pred CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECC
Confidence 999999999998886775 358999999999987766665543 689999999998876532221 123667776
Q ss_pred CC
Q 006695 393 NC 394 (635)
Q Consensus 393 nC 394 (635)
++
T Consensus 482 ~N 483 (562)
T 3a79_B 482 SN 483 (562)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=6.2e-30 Score=278.06 Aligned_cols=332 Identities=17% Similarity=0.134 Sum_probs=168.7
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceE
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVK 81 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~ 81 (635)
+||+++|.+..++ +|.++++|++|++++|.++++ + +..+++ |++|++++|.+..+| ...+++|++
T Consensus 46 ~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~---------~--~~~l~~-L~~L~Ls~N~l~~~~-~~~l~~L~~ 110 (457)
T 3bz5_A 46 SLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTL---------D--LSQNTN-LTYLACDSNKLTNLD-VTPLTKLTY 110 (457)
T ss_dssp EEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCC---------C--CTTCTT-CSEEECCSSCCSCCC-CTTCTTCCE
T ss_pred EEEccCCCcccCh--hhcccCCCCEEEccCCcCCeE---------c--cccCCC-CCEEECcCCCCceee-cCCCCcCCE
Confidence 4556666555542 455666666666666555521 1 233332 666666666665554 124556666
Q ss_pred EEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCC
Q 006695 82 LNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLR 161 (635)
Q Consensus 82 L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~ 161 (635)
|++++|+++.++ +..+++|++|++++|++.. + +++.+++|++|++++|...+.+ .++.+++|+.|++++|+ ++
T Consensus 111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~ 183 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-I-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-IT 183 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-C-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CC
T ss_pred EECCCCcCCeec--CCCCCcCCEEECCCCccce-e-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cc
Confidence 666666665553 5555666666666665433 2 2555566666666665444444 35555666666665543 23
Q ss_pred ccCCCCCCCCCcEEecCCCCCCCccC-cccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCC--
Q 006695 162 SFPSNLHFMSPIKIDFSSCFNLTEFP-QISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLK-- 238 (635)
Q Consensus 162 ~lp~~~~l~~L~~L~l~~c~~l~~~p-~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~-- 238 (635)
.+| ...+++|+.|++++|. ++.++ ...++|++|++++|.++++| ++.+++|+.|++++|.+.+..+..+.+++
T Consensus 184 ~l~-l~~l~~L~~L~l~~N~-l~~~~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L 259 (457)
T 3bz5_A 184 ELD-VSQNKLLNRLNCDTNN-ITKLDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTL 259 (457)
T ss_dssp CCC-CTTCTTCCEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEE
T ss_pred eec-cccCCCCCEEECcCCc-CCeeccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEE
Confidence 343 2245556666665543 22222 22345566666666666655 55556666666666655544333333332
Q ss_pred -----CCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcc-ccCchhcccccchhhccCCCCccEEEcCCCCCCcccc
Q 006695 239 -----SLHVLVLDDCSKLERFPEILEKMESVKCISLERTAIT-ELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA 312 (635)
Q Consensus 239 -----~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~ 312 (635)
+|+.|++++|...+.+| ++.+++|+.|++++|... .+|.....+..|. +..+++|+.|++++|+++.++
T Consensus 260 ~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~--l~~~~~L~~L~L~~N~l~~l~- 334 (457)
T 3bz5_A 260 HCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD- 334 (457)
T ss_dssp ECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCCEEECTTCCCSCCC-
T ss_pred eccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec--hhhcccCCEEECCCCcccccc-
Confidence 33444444444444444 345556666666665432 3443332333222 334456666666666665553
Q ss_pred cccCCCCccEEeccCCCCCCcCCCCCCccceecccccccccccCccccCccccchhhhhhhhh
Q 006695 313 SITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATF 375 (635)
Q Consensus 313 ~l~~l~~L~~L~L~~n~~l~~lp~l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~ 375 (635)
+..+++|+.|++++|++.+ + ++|..|++++|...+. ..+..|..++++.|.+
T Consensus 335 -l~~l~~L~~L~l~~N~l~~-l----~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l 386 (457)
T 3bz5_A 335 -VSHNTKLKSLSCVNAHIQD-F----SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSL 386 (457)
T ss_dssp -CTTCTTCSEEECCSSCCCB-C----TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBE
T ss_pred -cccCCcCcEEECCCCCCCC-c----cccccccccCCcEEec-----ceeeecCccccccCcE
Confidence 5566666666666655443 2 3444555554433221 2333444455555544
No 28
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.1e-29 Score=270.72 Aligned_cols=304 Identities=14% Similarity=0.105 Sum_probs=233.9
Q ss_pred CCCCCcEEEeecCCCCCCcccceeeecCCc-ccCCCccceEeecCCCCCCCCCCC-C-CCCCceEEEcCCCCCccccc-c
Q 006695 20 NMPNLRFLKFYMPEHNGVPIMISKVHLDQG-LEYLPNELRYLHWHEYPSKALPFD-F-EPENLVKLNLPYSKVVQIWE-G 95 (635)
Q Consensus 20 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~-l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~-~ 95 (635)
.+++|+.|++++|.++ .+|.. +..+++ |++|++++|.+..+|.. | .+++|++|++++|.++.++. .
T Consensus 43 ~l~~l~~l~l~~~~l~---------~l~~~~~~~l~~-L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 112 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR---------KLPAALLDSFRQ-VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 112 (390)
T ss_dssp GGCCCSEEEEESCEES---------EECTHHHHHCCC-CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred ccCCceEEEecCCchh---------hCChhHhccccc-CcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH
Confidence 3578888888887766 44444 344444 88888888888887763 5 68888888888888887754 4
Q ss_pred CCCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcE
Q 006695 96 KKRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIK 174 (635)
Q Consensus 96 ~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~ 174 (635)
+..+++|++|+|++|.+....+. ++.+++|++|++++|......+..++.+++|+.|++++|... .++ ...+++|+.
T Consensus 113 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~-~~~l~~L~~ 190 (390)
T 3o6n_A 113 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD-LSLIPSLFH 190 (390)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC-GGGCTTCSE
T ss_pred hcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-ccc-cccccccce
Confidence 68888888888888876543334 678888888888888776666667888888888888886533 332 235678888
Q ss_pred EecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcc
Q 006695 175 IDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERF 254 (635)
Q Consensus 175 L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~ 254 (635)
|+++++ .++.++ ...+|++|++++|.++.+|... .++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..
T Consensus 191 L~l~~n-~l~~~~-~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~ 264 (390)
T 3o6n_A 191 ANVSYN-LLSTLA-IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM 264 (390)
T ss_dssp EECCSS-CCSEEE-CCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE
T ss_pred eecccc-cccccC-CCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcC
Confidence 888875 344332 3457899999999998887643 57899999999988764 46788999999999999888888
Q ss_pred hhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcC
Q 006695 255 PEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSL 334 (635)
Q Consensus 255 ~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~l 334 (635)
|..+..+++|+.|++++|.++.+|..+ ..+++|+.|+|++|++..+|..+..+++|++|++++|++...-
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~----------~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 265 YHPFVKMQRLERLYISNNRLVALNLYG----------QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp SGGGTTCSSCCEEECCSSCCCEEECSS----------SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred hhHccccccCCEEECCCCcCcccCccc----------CCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC
Confidence 888999999999999999998876543 4468899999999999999988888999999999998875543
Q ss_pred CCCCCccceeccccccc
Q 006695 335 PELPQSLELLDAENCKQ 351 (635)
Q Consensus 335 p~l~~sL~~L~l~~c~~ 351 (635)
...+++|+.|++++|+.
T Consensus 335 ~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 335 LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp CCTTCCCSEEECCSSCE
T ss_pred chhhccCCEEEcCCCCc
Confidence 44567788888888764
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=1.5e-29 Score=286.23 Aligned_cols=356 Identities=18% Similarity=0.187 Sum_probs=237.6
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecC-CcccCCCccceEeecCCCCCCCCCCC-C-CCCC
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLD-QGLEYLPNELRYLHWHEYPSKALPFD-F-EPEN 78 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~ 78 (635)
.|||++|++..+.+.+|.++++|++|+|++|.++ .++ ..+..+++ |++|++++|.++.+|.. | ++++
T Consensus 56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~---------~i~~~~f~~L~~-L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---------TIEDGAYQSLSH-LSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC---------EECTTTTTTCTT-CCEEECTTCCCCEECGGGGTTCTT
T ss_pred EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC---------CcChhHhcCCCC-CCEEEccCCcCCCCCHHHhcCCCC
Confidence 6999999999999999999999999999999988 444 44666765 99999999999999976 5 7999
Q ss_pred ceEEEcCCCCCcccccc-CCCCCCCcEEEccCCCCCC-CCCC-CCCCCCCCEEeecCCCCCcccCccccCCCCC------
Q 006695 79 LVKLNLPYSKVVQIWEG-KKRAFKLKYVDIHNSQYLI-RMPD-LSETPNLERTNLKNCINLTCVPSSVQNFNHL------ 149 (635)
Q Consensus 79 L~~L~L~~n~l~~l~~~-~~~l~~L~~L~Ls~n~~~~-~~p~-l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L------ 149 (635)
|++|++++|+++.++.. ++++++|++|+|++|.+.. ..|. ++.+++|++|++++|...+..+..+..+.++
T Consensus 126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~ 205 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 205 (635)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCE
T ss_pred CCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhh
Confidence 99999999999999764 7999999999999998754 3453 7889999999999986655444433322211
Q ss_pred ---------------------CEEeecCCCCC------------------------------Cc----------------
Q 006695 150 ---------------------SMLCFEGCKSL------------------------------RS---------------- 162 (635)
Q Consensus 150 ---------------------~~L~L~~~~~l------------------------------~~---------------- 162 (635)
+.+++.+|... ..
T Consensus 206 ~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 285 (635)
T 4g8a_A 206 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 285 (635)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEE
T ss_pred hhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhh
Confidence 11222211000 00
Q ss_pred -----------------------------------cCCCCCCCCCcEEecCCCCCCC--------------------ccC
Q 006695 163 -----------------------------------FPSNLHFMSPIKIDFSSCFNLT--------------------EFP 187 (635)
Q Consensus 163 -----------------------------------lp~~~~l~~L~~L~l~~c~~l~--------------------~~p 187 (635)
++......+++.|++.+|..-. ..+
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 365 (635)
T 4g8a_A 286 FRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF 365 (635)
T ss_dssp EEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC
T ss_pred hhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc
Confidence 0000012234444444431100 000
Q ss_pred --cccCCcceEEeccccccc--------------------------cCcccccCCCccEEEeecccccccch-hcccCCC
Q 006695 188 --QISGNITDLILSETAIQE--------------------------VPSSIECLTNLEKLYINRCMRLKRLS-TSICKLK 238 (635)
Q Consensus 188 --~~~~~L~~L~L~~n~i~~--------------------------lp~~~~~l~~L~~L~L~~n~~~~~lp-~~~~~l~ 238 (635)
..+++|+.|++++|.+.. ++..+..+++|+.+++.+|......+ ..+..++
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~ 445 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 445 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 112466777777766543 23334445555555555544443332 3345566
Q ss_pred CCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccc--cCchhcccccchhhccCCCCccEEEcCCCCCCccc-cccc
Q 006695 239 SLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITE--LPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLP-ASIT 315 (635)
Q Consensus 239 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp-~~l~ 315 (635)
+++.++++.|.+....+..+..+++|+.|++++|.+.. +|. .+..+++|+.|+|++|+++.++ ..+.
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~----------~~~~l~~L~~L~Ls~N~L~~l~~~~f~ 515 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD----------IFTELRNLTFLDLSQCQLEQLSPTAFN 515 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS----------CCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCch----------hhhhccccCEEECCCCccCCcChHHHc
Confidence 66666666666666666666666666667666665332 233 2345678888888888887774 4578
Q ss_pred CCCCccEEeccCCCCCCcCCC---CCCccceecccccccccccCccccCc-cccchhhhhhhhhcc
Q 006695 316 QLSQLRSLHLKDCSMLSSLPE---LPQSLELLDAENCKQLQFIPEILSGL-EEVDASVLEKATFLN 377 (635)
Q Consensus 316 ~l~~L~~L~L~~n~~l~~lp~---l~~sL~~L~l~~c~~l~~~~~~~~~L-~~L~~l~L~~n~~~~ 377 (635)
++++|++|+|++|++.+..|. .+++|++|++++|......|..+..+ ++|+.++|++|++.|
T Consensus 516 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 888888888888776555444 24688888888888777777777777 578888888887755
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=3.3e-29 Score=262.57 Aligned_cols=304 Identities=17% Similarity=0.228 Sum_probs=163.1
Q ss_pred hhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccC
Q 006695 17 AFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGK 96 (635)
Q Consensus 17 ~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~ 96 (635)
.+..+++|+.|+++++.+.. ++ ++..+++ |++|++++|.+..+|....+++|++|++++|.++.++ .+
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~---------~~-~~~~~~~-L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~ 106 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS---------IQ-GIEYLTN-LEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-AL 106 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC---------CT-TGGGCTT-CCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GG
T ss_pred cchhcccccEEEEeCCcccc---------ch-hhhhcCC-ccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HH
Confidence 34556667777777666552 21 2444443 6666666666666665225666666666666666653 46
Q ss_pred CCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEe
Q 006695 97 KRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKID 176 (635)
Q Consensus 97 ~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~ 176 (635)
..+++|++|++++|.+. .++.+..+++|+.|++++|.....++ .+..+++|+.|++++|... .++....++
T Consensus 107 ~~l~~L~~L~l~~n~i~-~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~-~~~~~~~l~------ 177 (347)
T 4fmz_A 107 QNLTNLRELYLNEDNIS-DISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK-DVTPIANLT------ 177 (347)
T ss_dssp TTCTTCSEEECTTSCCC-CCGGGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCC-CCGGGGGCT------
T ss_pred cCCCcCCEEECcCCccc-CchhhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcC-CchhhccCC------
Confidence 66666666666666643 33346666666666666665444433 3666666666666665422 222222344
Q ss_pred cCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchh
Q 006695 177 FSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPE 256 (635)
Q Consensus 177 l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~ 256 (635)
+|++|++++|.++.++. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+
T Consensus 178 ---------------~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~- 238 (347)
T 4fmz_A 178 ---------------DLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP- 238 (347)
T ss_dssp ---------------TCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred ---------------CCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-
Confidence 45555555555555444 4555555555555555443332 4455555555555555443322
Q ss_pred hhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCC
Q 006695 257 ILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE 336 (635)
Q Consensus 257 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~ 336 (635)
+..+++|++|++++|.++.++. +..+++|+.|++++|.++.++ .+..+++|++|++++|++.+..|.
T Consensus 239 -~~~l~~L~~L~l~~n~l~~~~~-----------~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQISDINA-----------VKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp -GTTCTTCCEEECCSSCCCCCGG-----------GTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHH
T ss_pred -hhcCCCCCEEECCCCccCCChh-----------HhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChh
Confidence 5555555555555555554421 133455555555555555553 355555555555555555444333
Q ss_pred ---CCCccceecccccccccccCccccCccccchhhhhhhhh
Q 006695 337 ---LPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATF 375 (635)
Q Consensus 337 ---l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~ 375 (635)
.+++|+.|++++|+.....| +..+++|+.+++++|++
T Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 23455555555555433333 45555555555555544
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=6.7e-29 Score=260.24 Aligned_cols=295 Identities=16% Similarity=0.162 Sum_probs=208.4
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceE
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVK 81 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~ 81 (635)
.|+++++.+..++ +|..+++|++|++++|.++.++ . +..+++ |++|++++|.+..+|....+++|++
T Consensus 48 ~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~---------~-~~~l~~-L~~L~L~~n~i~~~~~~~~l~~L~~ 114 (347)
T 4fmz_A 48 KLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDIS---------P-LSNLVK-LTNLYIGTNKITDISALQNLTNLRE 114 (347)
T ss_dssp EEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCG---------G-GTTCTT-CCEEECCSSCCCCCGGGTTCTTCSE
T ss_pred EEEEeCCccccch--hhhhcCCccEEEccCCccccch---------h-hhcCCc-CCEEEccCCcccCchHHcCCCcCCE
Confidence 5899999988874 4999999999999999988433 2 555655 9999999999999886458999999
Q ss_pred EEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCC
Q 006695 82 LNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLR 161 (635)
Q Consensus 82 L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~ 161 (635)
|++++|.+..++. +..+++|+.|++++|.....++.+..+++|++|++++|......+ +..+++|+.|++++|.. .
T Consensus 115 L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l-~ 190 (347)
T 4fmz_A 115 LYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI-E 190 (347)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC-C
T ss_pred EECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc-c
Confidence 9999999999876 889999999999999888888889999999999999996554433 88999999999999753 3
Q ss_pred ccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCc
Q 006695 162 SFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLH 241 (635)
Q Consensus 162 ~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~ 241 (635)
.++....+++ |+.|++++|.++.++. +..+++|++|++++|.+.+..+ +..+++|+
T Consensus 191 ~~~~~~~l~~---------------------L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~ 246 (347)
T 4fmz_A 191 DISPLASLTS---------------------LHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLT 246 (347)
T ss_dssp CCGGGGGCTT---------------------CCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred ccccccCCCc---------------------cceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCC
Confidence 3333223444 4555555555555544 5566666666666665544333 55666666
Q ss_pred EEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccc-ccccCCCCc
Q 006695 242 VLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLP-ASITQLSQL 320 (635)
Q Consensus 242 ~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp-~~l~~l~~L 320 (635)
+|++++|.+.+. ..+..+++|+.|++++|.++.++. +..+++|+.|++++|.+...+ ..+..+++|
T Consensus 247 ~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~-----------~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 247 WLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDISV-----------LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG-----------GGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred EEECCCCccCCC--hhHhcCCCcCEEEccCCccCCChh-----------hcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 666666655442 345666666666666666665532 233466666666666665443 345666666
Q ss_pred cEEeccCCCCCCcCC-CCCCccceecccccc
Q 006695 321 RSLHLKDCSMLSSLP-ELPQSLELLDAENCK 350 (635)
Q Consensus 321 ~~L~L~~n~~l~~lp-~l~~sL~~L~l~~c~ 350 (635)
++|++++|++.+..| ..+++|+.|++++|+
T Consensus 314 ~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 314 TTLFLSQNHITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp SEEECCSSSCCCCGGGGGCTTCSEESSSCC-
T ss_pred CEEEccCCccccccChhhhhccceeehhhhc
Confidence 666666666555444 234566666666665
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=4e-29 Score=273.66 Aligned_cols=312 Identities=16% Similarity=0.175 Sum_probs=218.6
Q ss_pred cEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCceEEEcCCCCCccc-cccCCCCCC
Q 006695 25 RFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENLVKLNLPYSKVVQI-WEGKKRAFK 101 (635)
Q Consensus 25 ~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~l-~~~~~~l~~ 101 (635)
+.++.+++.++ .+|.++ +.+++.|++++|.+..++.. | .+++|++|+|++|.++.+ |..+.++++
T Consensus 14 ~~v~c~~~~l~---------~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 81 (477)
T 2id5_A 14 RAVLCHRKRFV---------AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN 81 (477)
T ss_dssp TEEECCSCCCS---------SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CEEEeCCCCcC---------cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCcc
Confidence 45666665555 333332 34578888888887777543 4 677888888888887766 566777888
Q ss_pred CcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCC
Q 006695 102 LKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSC 180 (635)
Q Consensus 102 L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c 180 (635)
|++|+|++|.+....+. +.++++|++|+|++|......+..+..+++|+.|++++|......+..+
T Consensus 82 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------------- 148 (477)
T 2id5_A 82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF------------- 148 (477)
T ss_dssp CCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS-------------
T ss_pred CCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhc-------------
Confidence 88888888775543333 6777888888888877666667777777888888887765433323222
Q ss_pred CCCCccCcccCCcceEEeccccccccCcc-cccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhc
Q 006695 181 FNLTEFPQISGNITDLILSETAIQEVPSS-IECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILE 259 (635)
Q Consensus 181 ~~l~~~p~~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~ 259 (635)
..+++|++|++++|.++.+|.. +..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++....
T Consensus 149 -------~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 221 (477)
T 2id5_A 149 -------SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221 (477)
T ss_dssp -------TTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT
T ss_pred -------cCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc
Confidence 1124566777777777777643 77778888888888877777677777788888888888877777776666
Q ss_pred CCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc-cccCCCCccEEeccCCCCCCcCCCC-
Q 006695 260 KMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA-SITQLSQLRSLHLKDCSMLSSLPEL- 337 (635)
Q Consensus 260 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~-~l~~l~~L~~L~L~~n~~l~~lp~l- 337 (635)
...+|+.|++++|.++.+|.. .+..+++|+.|+|++|.++.++. .+..+++|++|+|++|++.+..|..
T Consensus 222 ~~~~L~~L~l~~n~l~~~~~~---------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (477)
T 2id5_A 222 YGLNLTSLSITHCNLTAVPYL---------AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF 292 (477)
T ss_dssp TTCCCSEEEEESSCCCSCCHH---------HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred cCccccEEECcCCcccccCHH---------HhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh
Confidence 666788888888888877742 23455778888888888777764 3677888888888887776665543
Q ss_pred --CCccceecccccccccccCccccCccccchhhhhhhhhcc
Q 006695 338 --PQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLN 377 (635)
Q Consensus 338 --~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~ 377 (635)
.++|+.|++++|......+..+..+++|+.+++++|++.+
T Consensus 293 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 293 RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp TTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred cCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 3678888888886655555567788888888888887754
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=2.3e-29 Score=275.65 Aligned_cols=292 Identities=20% Similarity=0.208 Sum_probs=148.0
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCc
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENL 79 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L 79 (635)
.|||++|++..+.+.+|.++++|++|+|++|.+++ ..+..+..+++ |++|++++|.+..+|.. | .+++|
T Consensus 36 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--------~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA--------VEPGAFNNLFN-LRTLGLRSNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE--------ECTTTTTTCTT-CCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred EEECCCCccceECHhHccCCCCCCEEECCCCccCE--------eChhhhhCCcc-CCEEECCCCcCCccCcccccCCCCC
Confidence 35556665555555556666666666666555541 11344444443 66666666665555554 3 45566
Q ss_pred eEEEcCCCCCccc-cccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCC
Q 006695 80 VKLNLPYSKVVQI-WEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGC 157 (635)
Q Consensus 80 ~~L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~ 157 (635)
++|+|++|++..+ +..+..+++|+.|+|++|.+....+ .+.++++|++|++++|......+..+..+++|+.|++++|
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence 6666666655544 2344555566666666655444333 3555556666666655443333334555556666666555
Q ss_pred CCCCccCCCC-CCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccC
Q 006695 158 KSLRSFPSNL-HFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICK 236 (635)
Q Consensus 158 ~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~ 236 (635)
......+..+ .+++|+.|++++|..+..+ |.......+|+.|++++|.+.+..+..+..
T Consensus 187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~--------------------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 246 (477)
T 2id5_A 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTM--------------------TPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246 (477)
T ss_dssp CCCEECTTCSCSCTTCCEEEEECCTTCCEE--------------------CTTTTTTCCCSEEEEESSCCCSCCHHHHTT
T ss_pred cCcEeChhhcccCcccceeeCCCCcccccc--------------------CcccccCccccEEECcCCcccccCHHHhcC
Confidence 4333222222 4455555555555444444 333333335555555555444333334445
Q ss_pred CCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc-cc
Q 006695 237 LKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS-IT 315 (635)
Q Consensus 237 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~-l~ 315 (635)
+++|+.|+|++|.+.+..+..+..+++|+.|++++|.++.++.. .+..+++|+.|+|++|.++.+|.. +.
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------~~~~l~~L~~L~L~~N~l~~~~~~~~~ 317 (477)
T 2id5_A 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY---------AFRGLNYLRVLNVSGNQLTTLEESVFH 317 (477)
T ss_dssp CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT---------TBTTCTTCCEEECCSSCCSCCCGGGBS
T ss_pred ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH---------HhcCcccCCEEECCCCcCceeCHhHcC
Confidence 55555555555554444444455555555555555555543211 123345555555555555555432 35
Q ss_pred CCCCccEEeccCCCCC
Q 006695 316 QLSQLRSLHLKDCSML 331 (635)
Q Consensus 316 ~l~~L~~L~L~~n~~l 331 (635)
.+++|++|+|++|++.
T Consensus 318 ~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 318 SVGNLETLILDSNPLA 333 (477)
T ss_dssp CGGGCCEEECCSSCEE
T ss_pred CCcccCEEEccCCCcc
Confidence 5555566666555543
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=5.6e-29 Score=280.16 Aligned_cols=304 Identities=14% Similarity=0.108 Sum_probs=218.4
Q ss_pred CCCCcEEEeecCCCCCCcccceeeecCCcc-cCCCccceEeecCCCCCCCCCC-CC-CCCCceEEEcCCCCCcccccc-C
Q 006695 21 MPNLRFLKFYMPEHNGVPIMISKVHLDQGL-EYLPNELRYLHWHEYPSKALPF-DF-EPENLVKLNLPYSKVVQIWEG-K 96 (635)
Q Consensus 21 l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l-~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~-~ 96 (635)
+.+++.|++++|.++ .+|..+ ..+++ |++|++++|.+..+|. .| .+++|++|+|++|.++.++.. +
T Consensus 50 l~~l~~l~l~~~~l~---------~lp~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 119 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR---------KLPAALLDSFRQ-VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 119 (597)
T ss_dssp GCCCSEEEESSCEES---------EECTHHHHHCCC-CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCCceEEEeeCCCCC---------CcCHHHHccCCC-CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHH
Confidence 466777777776655 334332 33333 7777777777777665 34 577777777777777766543 4
Q ss_pred CCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEE
Q 006695 97 KRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKI 175 (635)
Q Consensus 97 ~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L 175 (635)
..+++|++|+|++|.+....+. |+.+++|++|+|++|...+..|..++.+++|+.|++++|.. ..++ ...+++|+.|
T Consensus 120 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~-~~~l~~L~~L 197 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD-LSLIPSLFHA 197 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC-SBCC-GGGCTTCSEE
T ss_pred cCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC-CCcC-hhhhhhhhhh
Confidence 6777777777777765543333 56777777777777766666666677777777777777653 3332 2246677777
Q ss_pred ecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcch
Q 006695 176 DFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFP 255 (635)
Q Consensus 176 ~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~ 255 (635)
+++++ .+..++ .+.+|+.|++++|.++.+|..+ .++|+.|+|++|.+.+ +..+..+++|+.|+|++|.+.+..|
T Consensus 198 ~l~~n-~l~~l~-~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~ 271 (597)
T 3oja_B 198 NVSYN-LLSTLA-IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY 271 (597)
T ss_dssp ECCSS-CCSEEE-CCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEES
T ss_pred hcccC-cccccc-CCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCH
Confidence 77765 333332 3457888888888888877654 3688888998888776 3567888889999999988888888
Q ss_pred hhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCC
Q 006695 256 EILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLP 335 (635)
Q Consensus 256 ~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp 335 (635)
..+..+++|+.|+|++|.++.+|..+ ..+++|+.|+|++|.+..+|..+..+++|+.|+|++|++.+.-+
T Consensus 272 ~~~~~l~~L~~L~Ls~N~l~~l~~~~----------~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~ 341 (597)
T 3oja_B 272 HPFVKMQRLERLYISNNRLVALNLYG----------QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL 341 (597)
T ss_dssp GGGTTCSSCCEEECTTSCCCEEECSS----------SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCC
T ss_pred HHhcCccCCCEEECCCCCCCCCCccc----------ccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcCh
Confidence 88888899999999999888876543 34578899999999988888888888899999999888766544
Q ss_pred CCCCccceecccccccc
Q 006695 336 ELPQSLELLDAENCKQL 352 (635)
Q Consensus 336 ~l~~sL~~L~l~~c~~l 352 (635)
..+++|+.|++++|+..
T Consensus 342 ~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 342 STHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CTTCCCSEEECCSSCEE
T ss_pred hhcCCCCEEEeeCCCCC
Confidence 56678888888888753
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=1.1e-28 Score=269.52 Aligned_cols=315 Identities=16% Similarity=0.176 Sum_probs=265.2
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceE
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVK 81 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~ 81 (635)
+||+++|.+..+.+ |.++++|++|++++|.+++++ . +..+++ |++|++++|.+..+|....+++|++
T Consensus 72 ~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---------~-~~~l~~-L~~L~L~~n~l~~~~~~~~l~~L~~ 138 (466)
T 1o6v_A 72 QINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT---------P-LANLTN-LTGLTLFNNQITDIDPLKNLTNLNR 138 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG---------G-GTTCTT-CCEEECCSSCCCCCGGGTTCTTCSE
T ss_pred EEECCCCccCCchh--hhccccCCEEECCCCccccCh---------h-hcCCCC-CCEEECCCCCCCCChHHcCCCCCCE
Confidence 68999999988865 999999999999999988432 2 556655 9999999999999987458999999
Q ss_pred EEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCC
Q 006695 82 LNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLR 161 (635)
Q Consensus 82 L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~ 161 (635)
|++++|.+..++ .+..+++|+.|++++ . ....+.+..+++|+.|++++|... .+ ..+..+++|+.|++++|....
T Consensus 139 L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~-~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~l~~n~l~~ 213 (466)
T 1o6v_A 139 LELSSNTISDIS-ALSGLTSLQQLSFGN-Q-VTDLKPLANLTTLERLDISSNKVS-DI-SVLAKLTNLESLIATNNQISD 213 (466)
T ss_dssp EEEEEEEECCCG-GGTTCTTCSEEEEEE-S-CCCCGGGTTCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCC
T ss_pred EECCCCccCCCh-hhccCCcccEeecCC-c-ccCchhhccCCCCCEEECcCCcCC-CC-hhhccCCCCCEEEecCCcccc
Confidence 999999999886 488999999999974 3 344556999999999999999644 34 358899999999999987554
Q ss_pred ccCCCCCCCCCcEEecCCCCCCCccCc--ccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCC
Q 006695 162 SFPSNLHFMSPIKIDFSSCFNLTEFPQ--ISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKS 239 (635)
Q Consensus 162 ~lp~~~~l~~L~~L~l~~c~~l~~~p~--~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~ 239 (635)
..| ...+++|+.|++++|. ++.++. .+++|++|++++|.++.++. +..+++|+.|++++|.+.+..+ +..+++
T Consensus 214 ~~~-~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 288 (466)
T 1o6v_A 214 ITP-LGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTA 288 (466)
T ss_dssp CGG-GGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred ccc-ccccCCCCEEECCCCC-cccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCc
Confidence 433 4478999999999974 444442 34789999999999999876 8999999999999999876554 889999
Q ss_pred CcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCC
Q 006695 240 LHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQ 319 (635)
Q Consensus 240 L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~ 319 (635)
|+.|++++|.+.+..+ +..+++|+.|++++|.++.++. + ..+++|+.|++++|.+..++ .+..+++
T Consensus 289 L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~----------~~l~~L~~L~l~~n~l~~~~-~l~~l~~ 354 (466)
T 1o6v_A 289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-V----------SSLTKLQRLFFYNNKVSDVS-SLANLTN 354 (466)
T ss_dssp CSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-G----------GGCTTCCEEECCSSCCCCCG-GGTTCTT
T ss_pred cCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-h----------ccCccCCEeECCCCccCCch-hhccCCC
Confidence 9999999998877544 7899999999999999998754 2 45689999999999999885 7899999
Q ss_pred ccEEeccCCCCCCcCCC-CCCccceeccccccccc
Q 006695 320 LRSLHLKDCSMLSSLPE-LPQSLELLDAENCKQLQ 353 (635)
Q Consensus 320 L~~L~L~~n~~l~~lp~-l~~sL~~L~l~~c~~l~ 353 (635)
|+.|++++|++.+..|- .+++|+.|++++|+...
T Consensus 355 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 355 INWLSAGHNQISDLTPLANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEEC
T ss_pred CCEEeCCCCccCccchhhcCCCCCEEeccCCcccC
Confidence 99999999998877663 35899999999998655
No 36
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=8.7e-28 Score=260.90 Aligned_cols=315 Identities=19% Similarity=0.206 Sum_probs=202.4
Q ss_pred eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCccccee---eec----CCcccCCCccceEeecCCCCCCCCCCCC
Q 006695 2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISK---VHL----DQGLEYLPNELRYLHWHEYPSKALPFDF 74 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~---~~l----~~~l~~l~~~L~~L~l~~~~l~~lp~~~ 74 (635)
.||+++|.+..++. -.++|+.|++++|.++++|..... +.+ ..++...+.+|++|++++|.++.+|...
T Consensus 75 ~L~l~~~~l~~lp~----~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp~~~ 150 (454)
T 1jl5_A 75 ELELNNLGLSSLPE----LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQ 150 (454)
T ss_dssp EEECTTSCCSCCCS----CCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCCCT
T ss_pred EEEecCCccccCCC----CcCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCcccC
Confidence 46777776666543 135677777777766644421110 000 0112223345777888777777777423
Q ss_pred CCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEee
Q 006695 75 EPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCF 154 (635)
Q Consensus 75 ~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L 154 (635)
.+++|++|++++|+++.+|... .+|++|++++|++.. +|+++++++|+.|++++|... .+|... ++|+.|++
T Consensus 151 ~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~-~l~~~~---~~L~~L~l 222 (454)
T 1jl5_A 151 NSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLK-KLPDLP---LSLESIVA 222 (454)
T ss_dssp TCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCS-SCCCCC---TTCCEEEC
T ss_pred CCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCC-cCCCCc---CcccEEEC
Confidence 6777888888888777776543 477788888776544 667777888888888877543 344322 47888888
Q ss_pred cCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcc
Q 006695 155 EGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSI 234 (635)
Q Consensus 155 ~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~ 234 (635)
++|. ++.+|....+++|+.|++++| .++.+|..+.+|++|++++|.++++|.. +++|+.|++++|.+.+ +|.
T Consensus 223 ~~n~-l~~lp~~~~l~~L~~L~l~~N-~l~~l~~~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~-l~~-- 294 (454)
T 1jl5_A 223 GNNI-LEELPELQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSG-LSE-- 294 (454)
T ss_dssp CSSC-CSSCCCCTTCTTCCEEECCSS-CCSSCCSCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSE-ESC--
T ss_pred cCCc-CCcccccCCCCCCCEEECCCC-cCCcccccccccCEEECCCCcccccCcc---cCcCCEEECcCCccCc-ccC--
Confidence 7764 446776447788888888875 4556777777888888888888887764 3778888888887665 221
Q ss_pred cCCCCCcEEecCCCCCCCcchhhhcCC-CCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc
Q 006695 235 CKLKSLHVLVLDDCSKLERFPEILEKM-ESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS 313 (635)
Q Consensus 235 ~~l~~L~~L~Ls~n~~~~~~~~~l~~l-~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~ 313 (635)
-.++|+.|++++|.+.+ ++ .+ ++|+.|++++|+++.+|.. +++|+.|++++|+++.+|.
T Consensus 295 -~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~lp~~-------------~~~L~~L~L~~N~l~~lp~- 354 (454)
T 1jl5_A 295 -LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIELPAL-------------PPRLERLIASFNHLAEVPE- 354 (454)
T ss_dssp -CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSCCCCC-------------CTTCCEEECCSSCCSCCCC-
T ss_pred -cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccccccc-------------CCcCCEEECCCCccccccc-
Confidence 12578888888887654 22 23 5889999999988887753 3789999999999999997
Q ss_pred ccCCCCccEEeccCCCCCC--cCCCC----------------CCccceeccccccccc--ccCcc
Q 006695 314 ITQLSQLRSLHLKDCSMLS--SLPEL----------------PQSLELLDAENCKQLQ--FIPEI 358 (635)
Q Consensus 314 l~~l~~L~~L~L~~n~~l~--~lp~l----------------~~sL~~L~l~~c~~l~--~~~~~ 358 (635)
.+++|++|++++|++.+ .+|.. +++|+.|++++|+..+ .+|..
T Consensus 355 --~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 355 --LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp --CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------
T ss_pred --hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh
Confidence 57899999999998877 66643 2679999999998765 45543
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=1.2e-28 Score=267.92 Aligned_cols=308 Identities=17% Similarity=0.120 Sum_probs=200.6
Q ss_pred cChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccc
Q 006695 13 LSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQI 92 (635)
Q Consensus 13 l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l 92 (635)
..+..++++++|+.|++++|.+++ +| ++..+++ |++|++++|.+..+| ...+++|++|++++|+++.+
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~---------~~-~l~~l~~-L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~ 100 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITD---------MT-GIEKLTG-LTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNL 100 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCC---------CT-TGGGCTT-CSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCC
T ss_pred ccccChhHcCCCCEEEccCCCccc---------Ch-hhcccCC-CCEEEccCCcCCeEc-cccCCCCCEEECcCCCCcee
Confidence 344567778888888888887772 22 4555544 888888888887776 23677888888888888877
Q ss_pred cccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCC
Q 006695 93 WEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSP 172 (635)
Q Consensus 93 ~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L 172 (635)
+ +..+++|++|++++|++.. +| ++.+++|++|++++|...+ + .++.+++|+.|++++|..++.++ ...+
T Consensus 101 ~--~~~l~~L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~~-~~~l--- 169 (457)
T 3bz5_A 101 D--VTPLTKLTYLNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKLD-VTPQ--- 169 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSC-CC-CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCCC-CTTC---
T ss_pred e--cCCCCcCCEEECCCCcCCe-ec-CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCcccccc-cccC---
Confidence 4 7778888888888887554 44 7778888888888875444 3 26777777777777776555442 1133
Q ss_pred cEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCC
Q 006695 173 IKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLE 252 (635)
Q Consensus 173 ~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~ 252 (635)
++|++|++++|.++.+| ++.+++|+.|++++|.+.+. .++.+++|+.|++++|.+.+
T Consensus 170 ------------------~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 170 ------------------TQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp ------------------TTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC
T ss_pred ------------------CcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc
Confidence 45556666666666665 56666677777766666543 25666677777777766655
Q ss_pred cchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCC-CCcccccccCCCCccEEeccCCCCC
Q 006695 253 RFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRND-SESLPASITQLSQLRSLHLKDCSML 331 (635)
Q Consensus 253 ~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~-~~~lp~~l~~l~~L~~L~L~~n~~l 331 (635)
+| +..+++|+.|++++|.++.+| ++.+++|+.+.....+|+.|++++|. ++.+| ++.+++|+.|++++|+.+
T Consensus 227 -ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l 299 (457)
T 3bz5_A 227 -ID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQL 299 (457)
T ss_dssp -CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTC
T ss_pred -cC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCccc
Confidence 34 566667777777777776665 33455555555555666666777766 34455 456777777777777777
Q ss_pred CcCCCCCC-----------ccceecccccccccccCccccCccccchhhhhhhhhc
Q 006695 332 SSLPELPQ-----------SLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFL 376 (635)
Q Consensus 332 ~~lp~l~~-----------sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~ 376 (635)
+.+|...+ +|+.|++++|.... + .+..+++|+.+++++|++.
T Consensus 300 ~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l--~l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 300 YLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-L--DVSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp CEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-C--CCTTCTTCSEEECCSSCCC
T ss_pred ceeccCCCcceEechhhcccCCEEECCCCcccc-c--ccccCCcCcEEECCCCCCC
Confidence 76665333 44555555544333 2 2666677777777776654
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.5e-27 Score=254.21 Aligned_cols=298 Identities=14% Similarity=0.091 Sum_probs=245.7
Q ss_pred cceEeecCCCCCCCCCCCC--CCCCceEEEcCCCCCccccc-cCCCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeec
Q 006695 56 ELRYLHWHEYPSKALPFDF--EPENLVKLNLPYSKVVQIWE-GKKRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLK 131 (635)
Q Consensus 56 ~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~ 131 (635)
++++|++.++.++.+|..+ .+++|++|++++|.++.++. .+..+++|++|+|++|.+....|. ++++++|++|+++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence 5999999999999999874 68999999999999998875 789999999999999997776665 8999999999999
Q ss_pred CCCCCcccCcc-ccCCCCCCEEeecCCCCCCccCCCC-CCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcc
Q 006695 132 NCINLTCVPSS-VQNFNHLSMLCFEGCKSLRSFPSNL-HFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSS 209 (635)
Q Consensus 132 ~n~~l~~~~~~-i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~ 209 (635)
+|... .+|.. ++.+++|++|++++|......+..+ .+++|+.|+++++..-..-...+++|+.|++++|.++.++
T Consensus 126 ~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~-- 202 (390)
T 3o6n_A 126 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA-- 202 (390)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE--
T ss_pred CCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC--
Confidence 99655 55554 6899999999999987655445444 7899999999997543333355689999999999988764
Q ss_pred cccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcccc-Cchhcccccch
Q 006695 210 IECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITEL-PSSFANLEGLK 288 (635)
Q Consensus 210 ~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~ 288 (635)
..++|+.|++++|.+... |. ...++|+.|++++|.+.+. ..+..+++|++|++++|.++.+ |..+
T Consensus 203 --~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~------- 268 (390)
T 3o6n_A 203 --IPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF------- 268 (390)
T ss_dssp --CCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG-------
T ss_pred --CCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc-------
Confidence 346899999999987654 33 2358999999999988764 5788999999999999999976 4443
Q ss_pred hhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCC---CCCccceecccccccccccCccccCcccc
Q 006695 289 DLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE---LPQSLELLDAENCKQLQFIPEILSGLEEV 365 (635)
Q Consensus 289 ~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~---l~~sL~~L~l~~c~~l~~~~~~~~~L~~L 365 (635)
..+++|+.|+|++|+++.+|..+..+++|++|+|++|++. .+|. .+++|+.|++++|+... ++ +..+++|
T Consensus 269 ---~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L 341 (390)
T 3o6n_A 269 ---VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTL 341 (390)
T ss_dssp ---TTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCC
T ss_pred ---cccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chhhccC
Confidence 5568999999999999999988889999999999998765 5554 24799999999998543 33 6778888
Q ss_pred chhhhhhhhhcc
Q 006695 366 DASVLEKATFLN 377 (635)
Q Consensus 366 ~~l~L~~n~~~~ 377 (635)
+.+++++|++.+
T Consensus 342 ~~L~l~~N~~~~ 353 (390)
T 3o6n_A 342 KNLTLSHNDWDC 353 (390)
T ss_dssp SEEECCSSCEEH
T ss_pred CEEEcCCCCccc
Confidence 888888887644
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=5.4e-27 Score=263.98 Aligned_cols=299 Identities=14% Similarity=0.080 Sum_probs=247.3
Q ss_pred cceEeecCCCCCCCCCCCC--CCCCceEEEcCCCCCccccc-cCCCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeec
Q 006695 56 ELRYLHWHEYPSKALPFDF--EPENLVKLNLPYSKVVQIWE-GKKRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLK 131 (635)
Q Consensus 56 ~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~ 131 (635)
+++.|++.++.+..+|..+ .+++|++|++++|.++.++. .+..+++|++|+|++|.+....|. ++++++|++|+|+
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 5999999999999999874 68999999999999998875 789999999999999997776664 7999999999999
Q ss_pred CCCCCcccCccccCCCCCCEEeecCCCCCCccCCCC-CCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCccc
Q 006695 132 NCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNL-HFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSI 210 (635)
Q Consensus 132 ~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~ 210 (635)
+|......+..++.+++|++|++++|......|..+ .+++|+.|++++|..-..-...+++|+.|++++|.++.++
T Consensus 132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~--- 208 (597)
T 3oja_B 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA--- 208 (597)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE---
T ss_pred CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc---
Confidence 996554444446999999999999987666555555 8899999999997543333355689999999999988653
Q ss_pred ccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcccc-Cchhcccccchh
Q 006695 211 ECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITEL-PSSFANLEGLKD 289 (635)
Q Consensus 211 ~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~ 289 (635)
..++|+.|++++|.+....+. + .++|+.|+|++|.+.+ +..+..+++|+.|++++|.++.+ |..+
T Consensus 209 -~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~-------- 274 (597)
T 3oja_B 209 -IPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF-------- 274 (597)
T ss_dssp -CCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGG--------
T ss_pred -CCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHh--------
Confidence 456899999999987654332 2 4689999999998877 36789999999999999999976 4444
Q ss_pred hccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCCC---CCccceecccccccccccCccccCccccc
Q 006695 290 LYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPEL---PQSLELLDAENCKQLQFIPEILSGLEEVD 366 (635)
Q Consensus 290 l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~l---~~sL~~L~l~~c~~l~~~~~~~~~L~~L~ 366 (635)
..+++|+.|+|++|.++.+|..+..+++|+.|+|++|++. .+|.. +++|+.|++++|..... .+..+++|+
T Consensus 275 --~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~L~ 348 (597)
T 3oja_B 275 --VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLK 348 (597)
T ss_dssp --TTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC---CCCTTCCCS
T ss_pred --cCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc---ChhhcCCCC
Confidence 5568999999999999999988889999999999998776 56653 47999999999986543 367778888
Q ss_pred hhhhhhhhhcc
Q 006695 367 ASVLEKATFLN 377 (635)
Q Consensus 367 ~l~L~~n~~~~ 377 (635)
.+++++|++.+
T Consensus 349 ~L~l~~N~~~~ 359 (597)
T 3oja_B 349 NLTLSHNDWDC 359 (597)
T ss_dssp EEECCSSCEEH
T ss_pred EEEeeCCCCCC
Confidence 88888887654
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=3.3e-26 Score=238.15 Aligned_cols=277 Identities=15% Similarity=0.149 Sum_probs=141.2
Q ss_pred ceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccc-cCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCC
Q 006695 57 LRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWE-GKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCI 134 (635)
Q Consensus 57 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~ 134 (635)
++.++++++.+..+|..+. ++|+.|++++|+++.++. .+..+++|++|+|++|.+....| .++.+++|++|++++|.
T Consensus 33 l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111 (330)
T ss_dssp TTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred CeEEEecCCCccccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence 4444444444444444331 344444444444444433 34444444444444444433323 24444444444444442
Q ss_pred CCcccCccccCCCCCCEEeecCCCCCCccCCCC-CCCCCcEEecCCCCCCC--ccC---cccCCcceEEeccccccccCc
Q 006695 135 NLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNL-HFMSPIKIDFSSCFNLT--EFP---QISGNITDLILSETAIQEVPS 208 (635)
Q Consensus 135 ~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~--~~p---~~~~~L~~L~L~~n~i~~lp~ 208 (635)
++.+|..+. ++|+.|++++|......+..+ .+++|+.|+++++..-. ..+ ..+++|++|++++|.++.+|.
T Consensus 112 -l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~ 188 (330)
T 1xku_A 112 -LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 188 (330)
T ss_dssp -CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS
T ss_pred -CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc
Confidence 223333322 344444444433221111111 34444444444432211 111 123456666666666666665
Q ss_pred ccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccch
Q 006695 209 SIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLK 288 (635)
Q Consensus 209 ~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~ 288 (635)
.+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|..+
T Consensus 189 ~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l------- 259 (330)
T 1xku_A 189 GLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL------- 259 (330)
T ss_dssp SCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTT-------
T ss_pred ccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhh-------
Confidence 543 66777777777666666666666777777777776666655556666777777777777777666544
Q ss_pred hhccCCCCccEEEcCCCCCCccccc-cc------CCCCccEEeccCCCCCC-cCC-C---CCCccceeccccc
Q 006695 289 DLYIGGSSLRQLNLSRNDSESLPAS-IT------QLSQLRSLHLKDCSMLS-SLP-E---LPQSLELLDAENC 349 (635)
Q Consensus 289 ~l~~~~~~L~~L~Ls~n~~~~lp~~-l~------~l~~L~~L~L~~n~~l~-~lp-~---l~~sL~~L~l~~c 349 (635)
..+++|++|++++|+++.+|.. +. ....|+.|++++|+... .++ . ...+++.+++++|
T Consensus 260 ---~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 260 ---ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp ---TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ---ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 3346677777777776666543 21 23566677777766542 122 1 2355666666665
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=2.6e-26 Score=239.13 Aligned_cols=279 Identities=13% Similarity=0.146 Sum_probs=150.7
Q ss_pred CCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCceEEEcCCCCCccc-cccCCCC
Q 006695 23 NLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENLVKLNLPYSKVVQI-WEGKKRA 99 (635)
Q Consensus 23 ~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~l-~~~~~~l 99 (635)
+|+.++++++.++ .+|..+ +.+|++|++++|.+..++.. | .+++|++|++++|+++.+ |..+..+
T Consensus 34 ~l~~l~~~~~~l~---------~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 101 (332)
T 2ft3_A 34 HLRVVQCSDLGLK---------AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL 101 (332)
T ss_dssp ETTEEECCSSCCS---------SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTC
T ss_pred cCCEEECCCCCcc---------ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCc
Confidence 4666666666555 223322 12466666666666666542 3 566666666666666655 4556666
Q ss_pred CCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCC--ccCCCCCCCCCcEEe
Q 006695 100 FKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLR--SFPSNLHFMSPIKID 176 (635)
Q Consensus 100 ~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~--~lp~~~~l~~L~~L~ 176 (635)
++|++|+|++|++. .+| .+. ++|++|++++|......+..+..+++|+.|++++|.... ..+..+...
T Consensus 102 ~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l------ 172 (332)
T 2ft3_A 102 RKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL------ 172 (332)
T ss_dssp TTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC------
T ss_pred CCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC------
Confidence 66666666666544 333 222 566666666664443333446666666666666654321 222222111
Q ss_pred cCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchh
Q 006695 177 FSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPE 256 (635)
Q Consensus 177 l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~ 256 (635)
+|++|++++|.++.+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus 173 ---------------~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 235 (332)
T 2ft3_A 173 ---------------KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG 235 (332)
T ss_dssp ---------------CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT
T ss_pred ---------------ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChh
Confidence 45555555666665555443 4566666666665555555566666666666666665555555
Q ss_pred hhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc-ccC------CCCccEEeccCCC
Q 006695 257 ILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS-ITQ------LSQLRSLHLKDCS 329 (635)
Q Consensus 257 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~-l~~------l~~L~~L~L~~n~ 329 (635)
.+..+++|+.|++++|.++.+|..+ ..+++|+.|++++|+++.+|.. +.. ..+|+.|++++|+
T Consensus 236 ~~~~l~~L~~L~L~~N~l~~lp~~l----------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 236 SLSFLPTLRELHLDNNKLSRVPAGL----------PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp GGGGCTTCCEEECCSSCCCBCCTTG----------GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred HhhCCCCCCEEECCCCcCeecChhh----------hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence 5666666666666666666655543 2235566666666666555432 221 3456666666665
Q ss_pred CC--CcCCC---CCCccceeccccc
Q 006695 330 ML--SSLPE---LPQSLELLDAENC 349 (635)
Q Consensus 330 ~l--~~lp~---l~~sL~~L~l~~c 349 (635)
.. ...|. ..++|+.|++++|
T Consensus 306 ~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 306 VPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccccccCcccccccchhhhhhcccc
Confidence 54 22222 2345566666555
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=2.2e-26 Score=239.68 Aligned_cols=277 Identities=16% Similarity=0.171 Sum_probs=187.2
Q ss_pred ceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCcccc-ccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCC
Q 006695 57 LRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIW-EGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCI 134 (635)
Q Consensus 57 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~ 134 (635)
++.++++++.++.+|..+ .++|+.|++++|.++.++ ..+..+++|++|+|++|++....| .++++++|++|++++|
T Consensus 35 l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n- 112 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN- 112 (332)
T ss_dssp TTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-
T ss_pred CCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-
Confidence 555555555555555443 235555555555555443 234555555555555554433333 2444555555555544
Q ss_pred CCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCc----ccCCcceEEeccccccc---cC
Q 006695 135 NLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQ----ISGNITDLILSETAIQE---VP 207 (635)
Q Consensus 135 ~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~----~~~~L~~L~L~~n~i~~---lp 207 (635)
. ++.+|..+. ++|+.|+++++. ++.++. .+++|++|++++|.++. .|
T Consensus 113 -----------------------~-l~~l~~~~~-~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 166 (332)
T 2ft3_A 113 -----------------------H-LVEIPPNLP-SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166 (332)
T ss_dssp -----------------------C-CCSCCSSCC-TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT
T ss_pred -----------------------c-CCccCcccc-ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCc
Confidence 2 223333332 445555554432 222221 23678888888888863 35
Q ss_pred cccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccc
Q 006695 208 SSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGL 287 (635)
Q Consensus 208 ~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L 287 (635)
..+..+ +|+.|++++|.+.+ +|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.++.++..
T Consensus 167 ~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~------- 235 (332)
T 2ft3_A 167 GAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG------- 235 (332)
T ss_dssp TSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT-------
T ss_pred ccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChh-------
Confidence 567777 99999999998765 555443 7999999999999988888999999999999999999988652
Q ss_pred hhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCCC---------CCccceecccccccc--cccC
Q 006695 288 KDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPEL---------PQSLELLDAENCKQL--QFIP 356 (635)
Q Consensus 288 ~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~l---------~~sL~~L~l~~c~~l--~~~~ 356 (635)
.+..+++|+.|+|++|+++.+|.++..+++|++|++++|++.+.-+.. .++|+.|++.+|+.. ...+
T Consensus 236 --~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~ 313 (332)
T 2ft3_A 236 --SLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313 (332)
T ss_dssp --GGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred --HhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc
Confidence 234568999999999999999999999999999999998876543321 357899999999876 5667
Q ss_pred ccccCccccchhhhhhhh
Q 006695 357 EILSGLEEVDASVLEKAT 374 (635)
Q Consensus 357 ~~~~~L~~L~~l~L~~n~ 374 (635)
..+..+++|+.+++++|+
T Consensus 314 ~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 314 ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGTTBCCSTTEEC----
T ss_pred ccccccchhhhhhccccc
Confidence 788889999888877763
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=6e-26 Score=236.20 Aligned_cols=281 Identities=13% Similarity=0.106 Sum_probs=231.6
Q ss_pred CCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeec
Q 006695 77 ENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFE 155 (635)
Q Consensus 77 ~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~ 155 (635)
.+|+.++++++.++.+|..+. ++|+.|+|++|.+....+ .++++++|++|+|++|...+..|..++.+++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 478999999999999998764 689999999999776655 59999999999999998777778999999999999999
Q ss_pred CCCCCCccCCCCCCCCCcEEecCCCCCCCccC----cccCCcceEEeccccccc---cCcccccCCCccEEEeecccccc
Q 006695 156 GCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFP----QISGNITDLILSETAIQE---VPSSIECLTNLEKLYINRCMRLK 228 (635)
Q Consensus 156 ~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p----~~~~~L~~L~L~~n~i~~---lp~~~~~l~~L~~L~L~~n~~~~ 228 (635)
+|. ++.+|..+. ++|+.|++++|. ++.++ ..+++|++|++++|.++. .+..+..+++|++|++++|.+..
T Consensus 109 ~n~-l~~l~~~~~-~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQ-LKELPEKMP-KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSC-CSBCCSSCC-TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCc-CCccChhhc-ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 876 557777654 899999999974 44443 234789999999999974 45678999999999999998764
Q ss_pred cchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCC
Q 006695 229 RLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSE 308 (635)
Q Consensus 229 ~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~ 308 (635)
+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.++.++.. .+..+++|++|+|++|.++
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---------~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG---------SLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT---------TGGGSTTCCEEECCSSCCS
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChh---------hccCCCCCCEEECCCCcCc
Confidence 555443 8999999999998888889999999999999999999987642 1245689999999999999
Q ss_pred cccccccCCCCccEEeccCCCCCCcCCCC---------CCccceeccccccccc--ccCccccCccccchhhhhhhh
Q 006695 309 SLPASITQLSQLRSLHLKDCSMLSSLPEL---------PQSLELLDAENCKQLQ--FIPEILSGLEEVDASVLEKAT 374 (635)
Q Consensus 309 ~lp~~l~~l~~L~~L~L~~n~~l~~lp~l---------~~sL~~L~l~~c~~l~--~~~~~~~~L~~L~~l~L~~n~ 374 (635)
.+|.++..+++|++|++++|++.+.-+.. .++|+.|++.+|+... ..|..+..+.+++.++|++|+
T Consensus 254 ~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 99999999999999999998876543322 2678999999998743 556788888889888888773
No 44
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=4.3e-26 Score=257.87 Aligned_cols=333 Identities=20% Similarity=0.175 Sum_probs=247.6
Q ss_pred CeeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCC-cccCCCccceEeecCCCCCCCCCCC-C-CCC
Q 006695 1 MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQ-GLEYLPNELRYLHWHEYPSKALPFD-F-EPE 77 (635)
Q Consensus 1 i~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~ 77 (635)
.+|||++|++..+++++|.++++|++|+|++|+++ .++. .+..+++ |++|++++|.++.+|.. | .++
T Consensus 79 ~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~---------~l~~~~f~~L~~-L~~L~Ls~N~l~~l~~~~~~~L~ 148 (635)
T 4g8a_A 79 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ---------SLALGAFSGLSS-LQKLVAVETNLASLENFPIGHLK 148 (635)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC---------EECGGGGTTCTT-CCEEECTTSCCCCSTTCCCTTCT
T ss_pred CEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC---------CCCHHHhcCCCC-CCEEECCCCcCCCCChhhhhcCc
Confidence 37999999999999999999999999999999988 4443 4556655 99999999999999976 5 799
Q ss_pred CceEEEcCCCCCcc--ccccCCCCCCCcEEEccCCCCCCCCC-CCCC---------------------------CCCCCE
Q 006695 78 NLVKLNLPYSKVVQ--IWEGKKRAFKLKYVDIHNSQYLIRMP-DLSE---------------------------TPNLER 127 (635)
Q Consensus 78 ~L~~L~L~~n~l~~--l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~---------------------------l~~L~~ 127 (635)
+|++|++++|.++. +|..+..+++|++|+|++|++....+ ++.. ...++.
T Consensus 149 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~ 228 (635)
T 4g8a_A 149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 228 (635)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhh
Confidence 99999999999985 46778899999999999998654322 1111 112223
Q ss_pred EeecCCCCCcc----------------------------------------------------------c----------
Q 006695 128 TNLKNCINLTC----------------------------------------------------------V---------- 139 (635)
Q Consensus 128 L~L~~n~~l~~----------------------------------------------------------~---------- 139 (635)
+++.+|..... +
T Consensus 229 l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 308 (635)
T 4g8a_A 229 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNV 308 (635)
T ss_dssp EEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTC
T ss_pred hhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccc
Confidence 33333210000 0
Q ss_pred ------------CccccCCCCCCEEeecCCCCCC--------------------ccCCCCCCCCCcEEecCCCCCCCc--
Q 006695 140 ------------PSSVQNFNHLSMLCFEGCKSLR--------------------SFPSNLHFMSPIKIDFSSCFNLTE-- 185 (635)
Q Consensus 140 ------------~~~i~~l~~L~~L~L~~~~~l~--------------------~lp~~~~l~~L~~L~l~~c~~l~~-- 185 (635)
...+.....|+.|++.+|.... ..+....+++|+.++++++.....
T Consensus 309 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 388 (635)
T 4g8a_A 309 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 388 (635)
T ss_dssp SEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred ccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccc
Confidence 0012233456666666553211 112223567777777776532110
Q ss_pred -----------------------cC---cccCCcceEEeccccccccC--cccccCCCccEEEeecccccccchhcccCC
Q 006695 186 -----------------------FP---QISGNITDLILSETAIQEVP--SSIECLTNLEKLYINRCMRLKRLSTSICKL 237 (635)
Q Consensus 186 -----------------------~p---~~~~~L~~L~L~~n~i~~lp--~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l 237 (635)
.+ ....+|+.+++..+...... ..+..+++++.++++.|.+....+..+..+
T Consensus 389 ~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~ 468 (635)
T 4g8a_A 389 CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 468 (635)
T ss_dssp CCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred cccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccc
Confidence 01 12256778888877766553 347889999999999999999999999999
Q ss_pred CCCcEEecCCCCCCC-cchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc-ccc
Q 006695 238 KSLHVLVLDDCSKLE-RFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA-SIT 315 (635)
Q Consensus 238 ~~L~~L~Ls~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~-~l~ 315 (635)
++|+.|++++|...+ ..|..+..+++|++|+|++|+|+.++.. .+.++++|++|+|++|+++.++. .+.
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~---------~f~~l~~L~~L~Ls~N~l~~l~~~~~~ 539 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT---------AFNSLSSLQVLNMSHNNFFSLDTFPYK 539 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT---------TTTTCTTCCEEECTTSCCCBCCCGGGT
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChH---------HHcCCCCCCEEECCCCcCCCCChhHHh
Confidence 999999999998654 4678899999999999999999987542 23567899999999999999865 589
Q ss_pred CCCCccEEeccCCCCCCcCCC----CCCccceecccccccc
Q 006695 316 QLSQLRSLHLKDCSMLSSLPE----LPQSLELLDAENCKQL 352 (635)
Q Consensus 316 ~l~~L~~L~L~~n~~l~~lp~----l~~sL~~L~l~~c~~l 352 (635)
++++|++|+|++|++.+..|. ++++|+.|++++|+..
T Consensus 540 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 540 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 999999999999998887776 3478999999999753
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=8.6e-27 Score=240.78 Aligned_cols=245 Identities=16% Similarity=0.189 Sum_probs=170.1
Q ss_pred CCceEEEcCCCCCc---cccccCCCCCCCcEEEccC-CCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCE
Q 006695 77 ENLVKLNLPYSKVV---QIWEGKKRAFKLKYVDIHN-SQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSM 151 (635)
Q Consensus 77 ~~L~~L~L~~n~l~---~l~~~~~~l~~L~~L~Ls~-n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~ 151 (635)
.+++.|++++|.+. .+|..+..+++|++|+|++ |.+...+| .++.+++|++|+|++|...+.+|..++.+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57888888888887 4788888888888888884 77666667 4888888888888888777788888888888888
Q ss_pred EeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEecccccc-ccCcccccCC-CccEEEeeccccccc
Q 006695 152 LCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQ-EVPSSIECLT-NLEKLYINRCMRLKR 229 (635)
Q Consensus 152 L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~-~lp~~~~~l~-~L~~L~L~~n~~~~~ 229 (635)
|++++|.....+|..+ ..+++|++|++++|.++ .+|..++.++ +|++|++++|.+.+.
T Consensus 130 L~Ls~N~l~~~~p~~~--------------------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~ 189 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSI--------------------SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189 (313)
T ss_dssp EECCSSEEESCCCGGG--------------------GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred EeCCCCccCCcCChHH--------------------hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc
Confidence 8888766443444322 11244555666666666 5666677776 777777777777767
Q ss_pred chhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCC-
Q 006695 230 LSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSE- 308 (635)
Q Consensus 230 lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~- 308 (635)
+|..+..++ |+.|++++|.+.+..|..+..+++|+.|++++|.++..+..+ ..+++|++|+|++|.+.
T Consensus 190 ~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----------~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 190 IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV----------GLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp CCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGC----------CCCTTCCEEECCSSCCEE
T ss_pred CChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcc----------cccCCCCEEECcCCcccC
Confidence 777777666 777777777776667777777777777777777776443322 33467777777777765
Q ss_pred cccccccCCCCccEEeccCCCCCCcCCCC--CCccceecccccccc
Q 006695 309 SLPASITQLSQLRSLHLKDCSMLSSLPEL--PQSLELLDAENCKQL 352 (635)
Q Consensus 309 ~lp~~l~~l~~L~~L~L~~n~~l~~lp~l--~~sL~~L~l~~c~~l 352 (635)
.+|..+..+++|++|+|++|++.+.+|.. +++|+.|++.+|+.+
T Consensus 259 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred cCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence 56666777777777777777666666653 345555666655543
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=4.4e-26 Score=235.43 Aligned_cols=248 Identities=16% Similarity=0.234 Sum_probs=213.4
Q ss_pred CCCcEEEccCCCCCC--CCC-CCCCCCCCCEEeecC-CCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEE
Q 006695 100 FKLKYVDIHNSQYLI--RMP-DLSETPNLERTNLKN-CINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKI 175 (635)
Q Consensus 100 ~~L~~L~Ls~n~~~~--~~p-~l~~l~~L~~L~L~~-n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L 175 (635)
.+++.|+|++|.+.. .+| .++++++|++|++++ |...+.+|..++.+++|++|++++|.....+|..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-------- 121 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-------- 121 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG--------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH--------
Confidence 589999999999876 666 589999999999995 77777889999999999999999887555555432
Q ss_pred ecCCCCCCCccCcccCCcceEEecccccc-ccCcccccCCCccEEEeecccccccchhcccCCC-CCcEEecCCCCCCCc
Q 006695 176 DFSSCFNLTEFPQISGNITDLILSETAIQ-EVPSSIECLTNLEKLYINRCMRLKRLSTSICKLK-SLHVLVLDDCSKLER 253 (635)
Q Consensus 176 ~l~~c~~l~~~p~~~~~L~~L~L~~n~i~-~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~-~L~~L~Ls~n~~~~~ 253 (635)
..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..++.++ +|++|++++|.+.+.
T Consensus 122 ------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~ 189 (313)
T 1ogq_A 122 ------------SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189 (313)
T ss_dssp ------------GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred ------------hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc
Confidence 12356777788888888 6788899999999999999999999999999998 999999999999989
Q ss_pred chhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCc
Q 006695 254 FPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSS 333 (635)
Q Consensus 254 ~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~ 333 (635)
+|..+..++ |+.|++++|.++..+. ..+..+++|+.|+|++|.++..+..+..+++|++|+|++|++.+.
T Consensus 190 ~~~~~~~l~-L~~L~Ls~N~l~~~~~---------~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 259 (313)
T 1ogq_A 190 IPPTFANLN-LAFVDLSRNMLEGDAS---------VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT 259 (313)
T ss_dssp CCGGGGGCC-CSEEECCSSEEEECCG---------GGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEEC
T ss_pred CChHHhCCc-ccEEECcCCcccCcCC---------HHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCc
Confidence 999999998 9999999999985432 234567899999999999987666789999999999999999888
Q ss_pred CCCC---CCccceecccccccccccCccccCccccchhhhhhhhhccc
Q 006695 334 LPEL---PQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNS 378 (635)
Q Consensus 334 lp~l---~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~ 378 (635)
+|.. +++|+.|++++|...+.+|.. ..+++|+.+++++|+.++.
T Consensus 260 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred CChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 8874 479999999999988888876 8899999999999997765
No 47
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=4.3e-24 Score=239.27 Aligned_cols=263 Identities=19% Similarity=0.196 Sum_probs=193.2
Q ss_pred CCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCCCCC
Q 006695 22 PNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFK 101 (635)
Q Consensus 22 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~ 101 (635)
.+++.|++++|.++ .+|..+. .+|++|++++|.++.+|. .+++|++|+|++|+++.+|. .+++
T Consensus 40 ~~l~~L~ls~n~L~---------~lp~~l~---~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~ 102 (622)
T 3g06_A 40 NGNAVLNVGESGLT---------TLPDCLP---AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPG 102 (622)
T ss_dssp HCCCEEECCSSCCS---------CCCSCCC---TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTT
T ss_pred CCCcEEEecCCCcC---------ccChhhC---CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCC
Confidence 45788888888777 3344332 358888888888888887 56788888888888888776 6678
Q ss_pred CcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCC
Q 006695 102 LKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCF 181 (635)
Q Consensus 102 L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~ 181 (635)
|++|+|++|.+.. +|. .+++|+.|++++|. +..+|.. +++|++|++++|+ ++.+|. ...+|+.|++++|
T Consensus 103 L~~L~Ls~N~l~~-l~~--~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~-l~~l~~--~~~~L~~L~L~~N- 171 (622)
T 3g06_A 103 LLELSIFSNPLTH-LPA--LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPA--LPSELCKLWAYNN- 171 (622)
T ss_dssp CCEEEECSCCCCC-CCC--CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSS-
T ss_pred CCEEECcCCcCCC-CCC--CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCc-CCCcCC--ccCCCCEEECCCC-
Confidence 8888888887443 444 56788888888874 4445543 4778888888764 445554 3467888888774
Q ss_pred CCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCC
Q 006695 182 NLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKM 261 (635)
Q Consensus 182 ~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l 261 (635)
.++.+|..+++|+.|++++|.++.+|.. +++|+.|++++|.+.. +|. .+++|+.|++++|.+.+ +| ..+
T Consensus 172 ~l~~l~~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l 240 (622)
T 3g06_A 172 QLTSLPMLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLP 240 (622)
T ss_dssp CCSCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCC
T ss_pred CCCCCcccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCC
Confidence 5666776677888888888888887764 4678888888887653 443 34778888888876655 44 456
Q ss_pred CCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCC
Q 006695 262 ESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE 336 (635)
Q Consensus 262 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~ 336 (635)
++|+.|++++|.|+.+|. .+++|+.|+|++|.++.+|..+.++++|+.|+|++|++.+..|.
T Consensus 241 ~~L~~L~Ls~N~L~~lp~-------------~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 241 SELKELMVSGNRLTSLPM-------------LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp TTCCEEECCSSCCSCCCC-------------CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CcCcEEECCCCCCCcCCc-------------ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 788888888888888775 23678888888888888888888888888888888887766654
No 48
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=7.8e-24 Score=237.17 Aligned_cols=257 Identities=21% Similarity=0.213 Sum_probs=157.3
Q ss_pred ccceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCC
Q 006695 55 NELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCI 134 (635)
Q Consensus 55 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~ 134 (635)
++++.|+++++.++.+|..+. ++|++|++++|+++.+|. .+++|++|+|++|++. .+|. .+++|++|+|++|.
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~--~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT-SLPV--LPPGLLELSIFSNP 112 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCS-CCCC--CCTTCCEEEECSCC
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCC-cCCC--CCCCCCEEECcCCc
Confidence 458999999999999998765 799999999999998887 5789999999999854 5665 77899999999884
Q ss_pred CCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCC
Q 006695 135 NLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLT 214 (635)
Q Consensus 135 ~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~ 214 (635)
+..+|. .+++|+.|++++|+ ++.+|.. +++|+.|++++| .++.+|..+++|+.|++++|.++.+| ..++
T Consensus 113 -l~~l~~---~l~~L~~L~L~~N~-l~~lp~~--l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~ 181 (622)
T 3g06_A 113 -LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL--PPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLP---MLPS 181 (622)
T ss_dssp -CCCCCC---CCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCC---CCCT
T ss_pred -CCCCCC---CCCCcCEEECCCCC-CCcCCCC--CCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCc---ccCC
Confidence 444554 56788888888765 4555553 366666666665 44555555566666666666666665 3345
Q ss_pred CccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCC
Q 006695 215 NLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGG 294 (635)
Q Consensus 215 ~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~ 294 (635)
+|+.|++++|.+.+ +|. .+++|+.|++++|.+.. +|. .+++|+.|++++|.|+.+|.. +
T Consensus 182 ~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp~~-------------l 240 (622)
T 3g06_A 182 GLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLPVL-------------P 240 (622)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCCCC-------------C
T ss_pred CCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCCCC-------------C
Confidence 66666666655443 222 13455555555544332 221 124455555555555544411 2
Q ss_pred CCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCCC---CCccceecccccccccc
Q 006695 295 SSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPEL---PQSLELLDAENCKQLQF 354 (635)
Q Consensus 295 ~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~l---~~sL~~L~l~~c~~l~~ 354 (635)
++|+.|+|++|.++.+|. .+++|+.|+|++|++. .+|.. +++|+.|++++|+..+.
T Consensus 241 ~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 241 SELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred CcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCc
Confidence 445555555555555543 3444555555544333 33331 23444445544444333
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.5e-24 Score=225.41 Aligned_cols=229 Identities=25% Similarity=0.308 Sum_probs=189.9
Q ss_pred CCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEee
Q 006695 76 PENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCF 154 (635)
Q Consensus 76 l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L 154 (635)
..+++.|++++|+++.+|..+..+++|++|+|++|.+. .+| .++.+++|++|+|++|... .+|..++.+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 46889999999999999988888999999999999876 666 4888999999999998555 78888999999999999
Q ss_pred cCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcc
Q 006695 155 EGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSI 234 (635)
Q Consensus 155 ~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~ 234 (635)
++|+..+.+|..+. ...+.+ .-..+++|++|++++|.++.+|..++.+++|++|++++|.+.+ +|..+
T Consensus 158 ~~n~~~~~~p~~~~-----~~~~~~------~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l 225 (328)
T 4fcg_A 158 RACPELTELPEPLA-----STDASG------EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAI 225 (328)
T ss_dssp EEETTCCCCCSCSE-----EEC-CC------CEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGG
T ss_pred CCCCCccccChhHh-----hccchh------hhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-Cchhh
Confidence 99888888876441 111111 0123467889999999999999999999999999999998875 66678
Q ss_pred cCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcc-ccCchhcccccchhhccCCCCccEEEcCCCC-CCcccc
Q 006695 235 CKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAIT-ELPSSFANLEGLKDLYIGGSSLRQLNLSRND-SESLPA 312 (635)
Q Consensus 235 ~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~-~~~lp~ 312 (635)
..+++|++|++++|++.+.+|..++.+++|+.|++++|.+. .+|..+ ..+++|+.|+|++|+ .+.+|.
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~----------~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI----------HRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG----------GGCTTCCEEECTTCTTCCCCCG
T ss_pred ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhh----------hcCCCCCEEeCCCCCchhhccH
Confidence 89999999999999999999999999999999999998665 667655 445899999999987 578999
Q ss_pred cccCCCCccEEeccCC
Q 006695 313 SITQLSQLRSLHLKDC 328 (635)
Q Consensus 313 ~l~~l~~L~~L~L~~n 328 (635)
++.++++|+.+++..+
T Consensus 296 ~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 296 LIAQLPANCIILVPPH 311 (328)
T ss_dssp GGGGSCTTCEEECCGG
T ss_pred HHhhccCceEEeCCHH
Confidence 9999999999999864
No 50
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=3.6e-27 Score=256.69 Aligned_cols=351 Identities=12% Similarity=0.081 Sum_probs=191.8
Q ss_pred eeecCCCcccccChhh-hcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCC-CC--CCC
Q 006695 2 FLDLSKITSIHLSPQA-FANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPF-DF--EPE 77 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~~-f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~-~~--~l~ 77 (635)
.||++++++....... |..+++|+.|++++|.++.. ....++..+...++ |++|++++|.+..... .+ .+.
T Consensus 7 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~----~~~~l~~~l~~~~~-L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA----RCKDISSALRVNPA-LAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHH----HHHHHHHHHHTCTT-CCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHH----HHHHHHHHHHhCCC-cCEEeCCCCcCChHHHHHHHHHHh
Confidence 5888888876665544 88899999999999887611 11123444555554 8888888887654211 11 233
Q ss_pred ----CceEEEcCCCCCc-----cccccCCCCCCCcEEEccCCCCCCCCC----C--CCCCCCCCEEeecCCCCCcc----
Q 006695 78 ----NLVKLNLPYSKVV-----QIWEGKKRAFKLKYVDIHNSQYLIRMP----D--LSETPNLERTNLKNCINLTC---- 138 (635)
Q Consensus 78 ----~L~~L~L~~n~l~-----~l~~~~~~l~~L~~L~Ls~n~~~~~~p----~--l~~l~~L~~L~L~~n~~l~~---- 138 (635)
+|++|++++|++. .++..+..+++|++|+|++|.+....+ . ....++|++|++++|.....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 6888888888877 356667778888888888887543211 1 23356788888888755542
Q ss_pred cCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccc-----cCcccccC
Q 006695 139 VPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQE-----VPSSIECL 213 (635)
Q Consensus 139 ~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~-----lp~~~~~l 213 (635)
++..+..+++|++|++++|......+..+. ..+....++|++|++++|.++. ++..+..+
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~---------------~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 226 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLC---------------QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK 226 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHH---------------HHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHC
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHH---------------HHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhC
Confidence 345566677788888877653221111010 0000011244555555555543 34445555
Q ss_pred CCccEEEeecccccccc-----hhcccCCCCCcEEecCCCCCCCc----chhhhcCCCCCCEEEecCCCccccC-chhcc
Q 006695 214 TNLEKLYINRCMRLKRL-----STSICKLKSLHVLVLDDCSKLER----FPEILEKMESVKCISLERTAITELP-SSFAN 283 (635)
Q Consensus 214 ~~L~~L~L~~n~~~~~l-----p~~~~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~lp-~~~~~ 283 (635)
++|++|++++|.+.... +..+..+++|++|++++|.+... ++..+..+++|++|++++|.++... ..+..
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 306 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE 306 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH
Confidence 66666666666543321 11222455666666666654432 4455555666666666666554211 11100
Q ss_pred cccchhhccCCCCccEEEcCCCCCCc-----ccccccCCCCccEEeccCCCCCCcCCC--------CCCccceecccccc
Q 006695 284 LEGLKDLYIGGSSLRQLNLSRNDSES-----LPASITQLSQLRSLHLKDCSMLSSLPE--------LPQSLELLDAENCK 350 (635)
Q Consensus 284 l~~L~~l~~~~~~L~~L~Ls~n~~~~-----lp~~l~~l~~L~~L~L~~n~~l~~lp~--------l~~sL~~L~l~~c~ 350 (635)
.+....++|++|++++|.++. ++..+..+++|++|+|++|.+....+. ..++|++|++++|.
T Consensus 307 -----~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 307 -----TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp -----HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred -----HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 001122456666666666543 344455556666666666544322111 12456666666664
Q ss_pred ccc----ccCccccCccccchhhhhhhhhcc
Q 006695 351 QLQ----FIPEILSGLEEVDASVLEKATFLN 377 (635)
Q Consensus 351 ~l~----~~~~~~~~L~~L~~l~L~~n~~~~ 377 (635)
... .++..+..+++|+.+++++|++..
T Consensus 382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 382 VSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp CCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 432 445555556666666666665544
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=3.7e-24 Score=222.43 Aligned_cols=206 Identities=20% Similarity=0.261 Sum_probs=109.9
Q ss_pred CCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCC-CCCCceEEEcCCCCCccccccCCCC
Q 006695 21 MPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDF-EPENLVKLNLPYSKVVQIWEGKKRA 99 (635)
Q Consensus 21 l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~~l 99 (635)
..+++.|++++|.++ .+|..+..+++ |++|++++|.+..+|..+ .+++|++|+|++|.++.+|..+..+
T Consensus 80 ~~~l~~L~L~~n~l~---------~lp~~l~~l~~-L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l 149 (328)
T 4fcg_A 80 QPGRVALELRSVPLP---------QFPDQAFRLSH-LQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASL 149 (328)
T ss_dssp STTCCEEEEESSCCS---------SCCSCGGGGTT-CSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGC
T ss_pred ccceeEEEccCCCch---------hcChhhhhCCC-CCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcC
Confidence 356666666666655 34444444433 666666666666666554 4566666666666666666666666
Q ss_pred CCCcEEEccCCCCCCCCCC-CC---------CCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCC
Q 006695 100 FKLKYVDIHNSQYLIRMPD-LS---------ETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHF 169 (635)
Q Consensus 100 ~~L~~L~Ls~n~~~~~~p~-l~---------~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l 169 (635)
++|++|+|++|.....+|. +. ++++|++|+|++|... .+|..++.+++|++|++++|.
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~----------- 217 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP----------- 217 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSC-----------
T ss_pred cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCC-----------
Confidence 6666666666555555552 22 2555555555555332 455555555555555555443
Q ss_pred CCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCC
Q 006695 170 MSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCS 249 (635)
Q Consensus 170 ~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~ 249 (635)
++.+|..++.+++|++|++++|.+.+.+|..++.+++|++|+|++|+
T Consensus 218 ---------------------------------l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 218 ---------------------------------LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp ---------------------------------CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCT
T ss_pred ---------------------------------CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCC
Confidence 33334444445555555555555555555555555555555555555
Q ss_pred CCCcchhhhcCCCCCCEEEecCCCcc-ccCchh
Q 006695 250 KLERFPEILEKMESVKCISLERTAIT-ELPSSF 281 (635)
Q Consensus 250 ~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~~ 281 (635)
..+.+|..+..+++|+.|++++|.+. .+|..+
T Consensus 265 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp TCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred chhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 55555555555555555555554333 344433
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=3.6e-23 Score=224.78 Aligned_cols=243 Identities=19% Similarity=0.202 Sum_probs=152.5
Q ss_pred cceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccc-cccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCC
Q 006695 56 ELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQI-WEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNC 133 (635)
Q Consensus 56 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n 133 (635)
..+.++..+..+..+|..+. ++|+.|+|++|+++.+ +..+..+++|++|+|++|.+....+ .|.++++|++|+|++|
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCcEEEECCCCcCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 35677888888888887653 6888999999998877 4567888999999999988766555 4888899999999988
Q ss_pred CCCcccCccccCCCCCCEEeecCCCCCCccCC-CC-CCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccc
Q 006695 134 INLTCVPSSVQNFNHLSMLCFEGCKSLRSFPS-NL-HFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIE 211 (635)
Q Consensus 134 ~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~-~~-~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~ 211 (635)
......+..+..+++|++|++++|+. +.++. .+ .+++|+.|++++|+.++.++.. .+.
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-------------------~~~ 193 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEG-------------------AFE 193 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTT-------------------TTT
T ss_pred cCCccChhhhcccCCCCEEECCCCCc-ceeCHhHHhcCCcccEEeCCCCCCccccChh-------------------hcc
Confidence 66655555688889999999988764 44544 23 6777777777777666655431 233
Q ss_pred cCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhc
Q 006695 212 CLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLY 291 (635)
Q Consensus 212 ~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~ 291 (635)
.+++|+.|++++|.+.+. | .+..+++|+.|+|++|.+.+..|..|..+++|+.|++++|.++.++.. .+
T Consensus 194 ~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------~~ 262 (452)
T 3zyi_A 194 GLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN---------AF 262 (452)
T ss_dssp TCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT---------TT
T ss_pred CCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH---------Hh
Confidence 444444444444443322 1 234444555555555554444455555555555555555555544221 12
Q ss_pred cCCCCccEEEcCCCCCCccccc-ccCCCCccEEeccCCCC
Q 006695 292 IGGSSLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSM 330 (635)
Q Consensus 292 ~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~ 330 (635)
..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+.
T Consensus 263 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 263 DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred cCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 3345555555555555555433 45566666666666543
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=6.1e-24 Score=223.20 Aligned_cols=265 Identities=15% Similarity=0.164 Sum_probs=155.2
Q ss_pred eEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccc-cCCCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCCC
Q 006695 58 RYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWE-GKKRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCIN 135 (635)
Q Consensus 58 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~ 135 (635)
...+.+++.++.+|..+. ++|++|++++|+++.++. .+..+++|++|+|++|.+....|+ ++++++|++|++++|..
T Consensus 34 ~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp SEEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eEeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence 346667777777777653 478888888888887765 577788888888888876655553 77788888888888755
Q ss_pred CcccCccccCCCCCCEEeecCCCCCCccCC--CC-CCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccC-cccc
Q 006695 136 LTCVPSSVQNFNHLSMLCFEGCKSLRSFPS--NL-HFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVP-SSIE 211 (635)
Q Consensus 136 l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~--~~-~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp-~~~~ 211 (635)
....+..++.+++|++|++++|+ ++.+|. .+ .+++|+.|++++|.. ++.++ ..++
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~--------------------~~~~~~~~~~ 171 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDT--------------------FTKIQRKDFA 171 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSS--------------------CCEECTTTTT
T ss_pred CcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcc--------------------ccccCHHHcc
Confidence 44333347778888888887764 334443 12 344444444444332 44442 3455
Q ss_pred cCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCch-hcccccchhh
Q 006695 212 CLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSS-FANLEGLKDL 290 (635)
Q Consensus 212 ~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~l 290 (635)
.+++|++|++++|.+.+..|..+..+++|++|++++|.+.......+..+++|+.|++++|.++.++.. +..
T Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~------- 244 (353)
T 2z80_A 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST------- 244 (353)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------
T ss_pred CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc-------
Confidence 666666666666666555566666666666666666554332222334466666666666666654321 100
Q ss_pred ccCCCCccEEEcCCCCCC-----cccccccCCCCccEEeccCCCCCCcCCC----CCCccceecccccccc
Q 006695 291 YIGGSSLRQLNLSRNDSE-----SLPASITQLSQLRSLHLKDCSMLSSLPE----LPQSLELLDAENCKQL 352 (635)
Q Consensus 291 ~~~~~~L~~L~Ls~n~~~-----~lp~~l~~l~~L~~L~L~~n~~l~~lp~----l~~sL~~L~l~~c~~l 352 (635)
......++.++++++.+. .+|..+..+++|++|++++|++. .+|. ..++|++|++++|+..
T Consensus 245 ~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp --CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 112344555555555533 35555566666666666665444 4443 1355666666666543
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=3.5e-23 Score=224.11 Aligned_cols=220 Identities=17% Similarity=0.146 Sum_probs=134.2
Q ss_pred cceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCcccc-ccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCC
Q 006695 56 ELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIW-EGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNC 133 (635)
Q Consensus 56 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n 133 (635)
..+.++..+..++.+|..+. ++++.|+|++|+++.++ ..+..+++|++|+|++|.+....+ .|.++++|++|+|++|
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 35677777888888887653 67888888888888775 567888888888888887655444 4778888888888888
Q ss_pred CCCcccCccccCCCCCCEEeecCCCCCCccCC-CC-CCCCCcEEecCCCCCCCccCc----ccCCcceEEeccccccccC
Q 006695 134 INLTCVPSSVQNFNHLSMLCFEGCKSLRSFPS-NL-HFMSPIKIDFSSCFNLTEFPQ----ISGNITDLILSETAIQEVP 207 (635)
Q Consensus 134 ~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~-~~-~l~~L~~L~l~~c~~l~~~p~----~~~~L~~L~L~~n~i~~lp 207 (635)
......+..+..+++|+.|++++|.. +.++. .+ .+++|+.|++++|+.+..++. .+.+|++|++++|.++.+|
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred cCCeeCHhHhhccccCceeeCCCCcc-cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 55544445688888888888887653 34443 22 667777777777665555443 1244555555555555554
Q ss_pred cccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccC
Q 006695 208 SSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELP 278 (635)
Q Consensus 208 ~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp 278 (635)
. +..+++|+.|+|++|.+.+..|..|.++++|+.|+|++|.+.+..+..|..+++|+.|+|++|+++.+|
T Consensus 202 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 202 N-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp C-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred c-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 2 444445555555555444444444444444444444444444444444444444444444444444433
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=2.6e-23 Score=211.59 Aligned_cols=200 Identities=17% Similarity=0.229 Sum_probs=99.0
Q ss_pred eEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccc-cCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCC
Q 006695 58 RYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWE-GKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCIN 135 (635)
Q Consensus 58 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~ 135 (635)
+.++.+++.++.+|..+ +++|++|++++|+++.++. .+..+++|++|+|++|.+....| .+..+++|++|++++|..
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 45566666666666543 3566666666666666653 35666666666666666544434 366666666666666652
Q ss_pred Cccc-CccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcc-cccC
Q 006695 136 LTCV-PSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSS-IECL 213 (635)
Q Consensus 136 l~~~-~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~-~~~l 213 (635)
.+.+ +..+..+++|++|++++|......+..+ ..+++|++|++++|.++.++.. ++.+
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l 152 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--------------------RGLAALQYLYLQDNALQALPDDTFRDL 152 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--------------------TTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHh--------------------hCCcCCCEEECCCCcccccCHhHhccC
Confidence 3333 4455666666666665544322212111 0112333333333444443322 4444
Q ss_pred CCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccC
Q 006695 214 TNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELP 278 (635)
Q Consensus 214 ~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp 278 (635)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++.+|
T Consensus 153 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 217 (285)
T 1ozn_A 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence 44444444444444333333444444444444444444444444444444444444444444433
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=1.5e-24 Score=224.40 Aligned_cols=259 Identities=14% Similarity=0.117 Sum_probs=141.6
Q ss_pred CceEEEcCCCCCccccccC-CCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeec
Q 006695 78 NLVKLNLPYSKVVQIWEGK-KRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFE 155 (635)
Q Consensus 78 ~L~~L~L~~n~l~~l~~~~-~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~ 155 (635)
.++.++++.+.+...+..+ ..+++|++|+|++|.+....| .+..+++|++|+|++|...+..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 4555566666665444332 455677777777776555443 36677777777777765444332 6677777777776
Q ss_pred CCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhccc
Q 006695 156 GCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSIC 235 (635)
Q Consensus 156 ~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~ 235 (635)
+|. ++.++. . ++|++|++++|.++.++.. .+++|++|++++|.+.+..+..+.
T Consensus 89 ~n~-l~~l~~---~---------------------~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~ 141 (317)
T 3o53_A 89 NNY-VQELLV---G---------------------PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEG 141 (317)
T ss_dssp SSE-EEEEEE---C---------------------TTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTG
T ss_pred CCc-cccccC---C---------------------CCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhh
Confidence 654 222221 1 2344444444444444322 244555555555555544444555
Q ss_pred CCCCCcEEecCCCCCCCcchhhh-cCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccc
Q 006695 236 KLKSLHVLVLDDCSKLERFPEIL-EKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASI 314 (635)
Q Consensus 236 ~l~~L~~L~Ls~n~~~~~~~~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l 314 (635)
.+++|++|++++|.+.+..+..+ ..+++|++|++++|.++.+|.. ..+++|++|+|++|.++.+|..+
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----------~~l~~L~~L~Ls~N~l~~l~~~~ 210 (317)
T 3o53_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-----------VVFAKLKTLDLSSNKLAFMGPEF 210 (317)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-----------CCCTTCCEEECCSSCCCEECGGG
T ss_pred ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-----------cccccCCEEECCCCcCCcchhhh
Confidence 55555555555555554444433 2455555555555555554321 12455666666666665555555
Q ss_pred cCCCCccEEeccCCCCCCcCCCC---CCccceecccccccc-cccCccccCccccchhhhhhhhhcc
Q 006695 315 TQLSQLRSLHLKDCSMLSSLPEL---PQSLELLDAENCKQL-QFIPEILSGLEEVDASVLEKATFLN 377 (635)
Q Consensus 315 ~~l~~L~~L~L~~n~~l~~lp~l---~~sL~~L~l~~c~~l-~~~~~~~~~L~~L~~l~L~~n~~~~ 377 (635)
..+++|++|+|++|++. .+|.. +++|+.|++++|+.. ..++..+..+++|+.++++++....
T Consensus 211 ~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp GGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred cccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 55666666666655443 34432 245666666666554 4555666667777777777554443
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.90 E-value=1.2e-25 Score=244.56 Aligned_cols=339 Identities=17% Similarity=0.151 Sum_probs=242.6
Q ss_pred eeecCCCcccccC----hhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCC-----CCC
Q 006695 2 FLDLSKITSIHLS----PQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKA-----LPF 72 (635)
Q Consensus 2 ~LdLs~n~~~~l~----~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~-----lp~ 72 (635)
.|++++|.+.... +.+|..+++|++|++++|.++... ...+...+.....+|++|++++|.+.. +|.
T Consensus 32 ~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~----~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 32 VVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVG----VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp EEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHH----HHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred EEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHH----HHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 6889999866432 567888999999999999876210 011223333322259999999999873 455
Q ss_pred CC-CCCCceEEEcCCCCCccc-----ccc-CCCCCCCcEEEccCCCCCCCC----C-CCCCCCCCCEEeecCCCCCcccC
Q 006695 73 DF-EPENLVKLNLPYSKVVQI-----WEG-KKRAFKLKYVDIHNSQYLIRM----P-DLSETPNLERTNLKNCINLTCVP 140 (635)
Q Consensus 73 ~~-~l~~L~~L~L~~n~l~~l-----~~~-~~~l~~L~~L~Ls~n~~~~~~----p-~l~~l~~L~~L~L~~n~~l~~~~ 140 (635)
.+ .+++|++|++++|.+... ... ....++|++|+|++|.+.... + .+..+++|++|++++|......+
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 55 689999999999998742 222 234678999999999866532 2 25668999999999997554433
Q ss_pred cccc-----CCCCCCEEeecCCCCCCc----cCCCC-CCCCCcEEecCCCCCCCcc------C---cccCCcceEEeccc
Q 006695 141 SSVQ-----NFNHLSMLCFEGCKSLRS----FPSNL-HFMSPIKIDFSSCFNLTEF------P---QISGNITDLILSET 201 (635)
Q Consensus 141 ~~i~-----~l~~L~~L~L~~~~~l~~----lp~~~-~l~~L~~L~l~~c~~l~~~------p---~~~~~L~~L~L~~n 201 (635)
..+. ..++|+.|++++|..... ++..+ .+++|+.|++++|. ++.. + ...++|++|++++|
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC
Confidence 3332 367999999999864432 33333 67899999999974 3321 1 12468999999999
Q ss_pred cccc-----cCcccccCCCccEEEeecccccccchhccc-----CCCCCcEEecCCCCCCCc----chhhhcCCCCCCEE
Q 006695 202 AIQE-----VPSSIECLTNLEKLYINRCMRLKRLSTSIC-----KLKSLHVLVLDDCSKLER----FPEILEKMESVKCI 267 (635)
Q Consensus 202 ~i~~-----lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~-----~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L 267 (635)
.++. ++..+..+++|++|++++|.+....+..+. ..++|++|++++|.+.+. ++..+..+++|++|
T Consensus 267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 346 (461)
T 1z7x_W 267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346 (461)
T ss_dssp CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEE
Confidence 9887 677788899999999999987654443332 236899999999987765 56777888999999
Q ss_pred EecCCCccccC-chhcccccchhhc-cCCCCccEEEcCCCCCC-----cccccccCCCCccEEeccCCCCCCc-------
Q 006695 268 SLERTAITELP-SSFANLEGLKDLY-IGGSSLRQLNLSRNDSE-----SLPASITQLSQLRSLHLKDCSMLSS------- 333 (635)
Q Consensus 268 ~L~~n~l~~lp-~~~~~l~~L~~l~-~~~~~L~~L~Ls~n~~~-----~lp~~l~~l~~L~~L~L~~n~~l~~------- 333 (635)
++++|.++... ..+. ..+ ...++|++|+|++|.++ .+|..+..+++|++|++++|++...
T Consensus 347 ~Ls~n~i~~~~~~~l~------~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~ 420 (461)
T 1z7x_W 347 QISNNRLEDAGVRELC------QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 420 (461)
T ss_dssp ECCSSBCHHHHHHHHH------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHH
T ss_pred EccCCccccccHHHHH------HHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHH
Confidence 99999887532 2221 111 12578999999999987 6788888899999999999877543
Q ss_pred -CCCCCCccceeccccccc
Q 006695 334 -LPELPQSLELLDAENCKQ 351 (635)
Q Consensus 334 -lp~l~~sL~~L~l~~c~~ 351 (635)
+|.....|+.|++.++..
T Consensus 421 ~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 421 SVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp HHTSTTCCCCEEECTTCCC
T ss_pred HhccCCcchhheeeccccc
Confidence 344445677777666544
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=1.1e-23 Score=216.59 Aligned_cols=274 Identities=16% Similarity=0.146 Sum_probs=179.7
Q ss_pred eEeecCCCCCCCCCCCCCCCCceEEEcCCCCCcccccc-CCCCCCCcEEEccCCCCCCC---CCCCCCCCCCCEEeecCC
Q 006695 58 RYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEG-KKRAFKLKYVDIHNSQYLIR---MPDLSETPNLERTNLKNC 133 (635)
Q Consensus 58 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~Ls~n~~~~~---~p~l~~l~~L~~L~L~~n 133 (635)
+.++++++.++.+|..+. ++|++|++++|+++.+|.. +..+++|++|+|++|.+... .+.+..+++|++|++++|
T Consensus 10 ~~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp TEEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred CEEEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 456666666777776542 5677777777777777655 46777777777777765422 123455677777777777
Q ss_pred CCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEecccccccc-Cccccc
Q 006695 134 INLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEV-PSSIEC 212 (635)
Q Consensus 134 ~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~l-p~~~~~ 212 (635)
. ...+|..+..+++|++|++++|... .++... ....+++|++|++++|.++.+ +..+..
T Consensus 89 ~-i~~l~~~~~~l~~L~~L~l~~n~l~-~~~~~~------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 148 (306)
T 2z66_A 89 G-VITMSSNFLGLEQLEHLDFQHSNLK-QMSEFS------------------VFLSLRNLIYLDISHTHTRVAFNGIFNG 148 (306)
T ss_dssp S-EEEEEEEEETCTTCCEEECTTSEEE-SSTTTT------------------TTTTCTTCCEEECTTSCCEECSTTTTTT
T ss_pred c-cccChhhcCCCCCCCEEECCCCccc-ccccch------------------hhhhccCCCEEECCCCcCCccchhhccc
Confidence 3 3456666777777777777775422 222100 001124556666666666654 344777
Q ss_pred CCCccEEEeecccccc-cchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhc
Q 006695 213 LTNLEKLYINRCMRLK-RLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLY 291 (635)
Q Consensus 213 l~~L~~L~L~~n~~~~-~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~ 291 (635)
+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++.++.. .+
T Consensus 149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---------~~ 219 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF---------PY 219 (306)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG---------GG
T ss_pred CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh---------hc
Confidence 8888888888888766 5677788888888888888888777778888888888888888888877642 13
Q ss_pred cCCCCccEEEcCCCCCCcc-cccccCC-CCccEEeccCCCCCCcCC-----CCCCccceecccccccccccCccccC
Q 006695 292 IGGSSLRQLNLSRNDSESL-PASITQL-SQLRSLHLKDCSMLSSLP-----ELPQSLELLDAENCKQLQFIPEILSG 361 (635)
Q Consensus 292 ~~~~~L~~L~Ls~n~~~~l-p~~l~~l-~~L~~L~L~~n~~l~~lp-----~l~~sL~~L~l~~c~~l~~~~~~~~~ 361 (635)
..+++|+.|+|++|++... |..+..+ ++|++|+|++|++...-+ .+....+.+.+..+...-..|..+.+
T Consensus 220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 4567888888888887664 4567777 488999999888765422 23344444544444433344544444
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=7.1e-23 Score=208.35 Aligned_cols=251 Identities=18% Similarity=0.204 Sum_probs=196.7
Q ss_pred ceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCC
Q 006695 79 LVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGC 157 (635)
Q Consensus 79 L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~ 157 (635)
-++++.+++.++.+|.++ .++|++|+|++|.+....+ .+..+++|++|++++|......+..+..+++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 378899999999998765 4699999999999766555 4899999999999999777666888999999999999988
Q ss_pred CCCCccCC-CCCCCCCcEEecCCCCCCCccCcccCCcceEEecccccccc-CcccccCCCccEEEeecccccccchhccc
Q 006695 158 KSLRSFPS-NLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEV-PSSIECLTNLEKLYINRCMRLKRLSTSIC 235 (635)
Q Consensus 158 ~~l~~lp~-~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~~lp~~~~ 235 (635)
..++.++. .+ ..+++|++|++++|.++.+ |..+..+++|++|++++|.+.+..+..+.
T Consensus 91 ~~l~~~~~~~~--------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 150 (285)
T 1ozn_A 91 AQLRSVDPATF--------------------HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150 (285)
T ss_dssp TTCCCCCTTTT--------------------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCccccCHHHh--------------------cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhc
Confidence 75555532 21 1124677777777778877 45688999999999999998877777789
Q ss_pred CCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcccc-CchhcccccchhhccCCCCccEEEcCCCCCCccccc-
Q 006695 236 KLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITEL-PSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS- 313 (635)
Q Consensus 236 ~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~- 313 (635)
.+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+ |..+ ..+++|+.|++++|.++.+|..
T Consensus 151 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----------~~l~~L~~L~l~~n~l~~~~~~~ 220 (285)
T 1ozn_A 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF----------RDLGRLMTLYLFANNLSALPTEA 220 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT----------TTCTTCCEEECCSSCCSCCCHHH
T ss_pred cCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHc----------cCcccccEeeCCCCcCCcCCHHH
Confidence 999999999999988776667799999999999999999876 4443 4568999999999999988854
Q ss_pred ccCCCCccEEeccCCCCCCcCCC--CCCccceecccccccccccCccccC
Q 006695 314 ITQLSQLRSLHLKDCSMLSSLPE--LPQSLELLDAENCKQLQFIPEILSG 361 (635)
Q Consensus 314 l~~l~~L~~L~L~~n~~l~~lp~--l~~sL~~L~l~~c~~l~~~~~~~~~ 361 (635)
+..+++|++|++++|++....+. ....++.+....+...-..|..+.+
T Consensus 221 ~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 221 LAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp HTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred cccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHhCC
Confidence 88999999999999987654432 2234555555555544455555443
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=5.9e-23 Score=215.66 Aligned_cols=279 Identities=18% Similarity=0.148 Sum_probs=206.6
Q ss_pred CCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCceEEEcCCCCCcccc-ccC
Q 006695 20 NMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENLVKLNLPYSKVVQIW-EGK 96 (635)
Q Consensus 20 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~-~~~ 96 (635)
.++.....+.+++.++ .+|.++. .+|++|++++|.++.+|.. | .+++|++|++++|+++.++ ..+
T Consensus 29 ~C~~~~~c~~~~~~l~---------~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN---------SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 96 (353)
T ss_dssp EECTTSEEECCSTTCS---------SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred CCCCCeEeeCCCCCcc---------ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhc
Confidence 4555667888888877 3444433 3699999999999999884 5 7899999999999999875 568
Q ss_pred CCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCCCCcccCc--cccCCCCCCEEeecCCCCCCccCCCCCCCCCc
Q 006695 97 KRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCINLTCVPS--SVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPI 173 (635)
Q Consensus 97 ~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~l~~~~~--~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~ 173 (635)
..+++|++|+|++|++....+. ++++++|++|++++|... .+|. .+..+++|++|++++|+.++.++...
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~------ 169 (353)
T 2z80_A 97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKD------ 169 (353)
T ss_dssp TTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTT------
T ss_pred CCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHH------
Confidence 8999999999999986654444 889999999999998554 5554 78899999999999987666654311
Q ss_pred EEecCCCCCCCccCcccCCcceEEecccccccc-CcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCC
Q 006695 174 KIDFSSCFNLTEFPQISGNITDLILSETAIQEV-PSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLE 252 (635)
Q Consensus 174 ~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~ 252 (635)
+ ...++|++|++++|.++.+ |..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+
T Consensus 170 ---------~----~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 170 ---------F----AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp ---------T----TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred ---------c----cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc
Confidence 0 1124566677777777765 5668888888888888887644333344558888888888887776
Q ss_pred cchhhh---cCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccc-cCCCCccEEeccCC
Q 006695 253 RFPEIL---EKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASI-TQLSQLRSLHLKDC 328 (635)
Q Consensus 253 ~~~~~l---~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l-~~l~~L~~L~L~~n 328 (635)
..+..+ ...+.++.++++++.++.. .+..++..+..+++|+.|+|++|+++.+|..+ ..+++|++|+|++|
T Consensus 237 ~~~~~l~~~~~~~~l~~l~L~~~~l~~~-----~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 237 FHFSELSTGETNSLIKKFTFRNVKITDE-----SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp CCCC------CCCCCCEEEEESCBCCHH-----HHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ccccccccccccchhhccccccccccCc-----chhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCC
Confidence 544332 3467788888888877631 01112334456789999999999999999875 89999999999999
Q ss_pred CCCCcCC
Q 006695 329 SMLSSLP 335 (635)
Q Consensus 329 ~~l~~lp 335 (635)
++....|
T Consensus 312 ~~~~~~~ 318 (353)
T 2z80_A 312 PWDCSCP 318 (353)
T ss_dssp CBCCCHH
T ss_pred CccCcCC
Confidence 8877554
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=3.5e-22 Score=216.20 Aligned_cols=240 Identities=16% Similarity=0.189 Sum_probs=204.5
Q ss_pred CCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCceEEEcCCCCCcccc-ccCCCC
Q 006695 23 NLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENLVKLNLPYSKVVQIW-EGKKRA 99 (635)
Q Consensus 23 ~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~-~~~~~l 99 (635)
..+.++..+..++ .+|.++ +.+++.|++++|.+..++.. | .+++|++|+|++|+++.++ ..+..+
T Consensus 44 ~~~~v~c~~~~l~---------~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l 111 (440)
T 3zyj_A 44 QFSKVICVRKNLR---------EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL 111 (440)
T ss_dssp TSCEEECCSCCCS---------SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTC
T ss_pred CCCEEEeCCCCcC---------cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCC
Confidence 3556777666666 344443 34699999999999998855 5 7999999999999999886 568899
Q ss_pred CCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCC--CCCCCcEEe
Q 006695 100 FKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNL--HFMSPIKID 176 (635)
Q Consensus 100 ~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~ 176 (635)
++|++|+|++|++....+ .+..+++|++|+|++|......+..+..+++|+.|++++|+.+..++... .+++|+.|+
T Consensus 112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence 999999999998765544 38999999999999997666666689999999999999988888887643 899999999
Q ss_pred cCCCCCCCccCcc--cCCcceEEecccccccc-CcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCc
Q 006695 177 FSSCFNLTEFPQI--SGNITDLILSETAIQEV-PSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLER 253 (635)
Q Consensus 177 l~~c~~l~~~p~~--~~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~ 253 (635)
+++| .++.+|.. ..+|++|+|++|.++.+ |..+..+++|+.|+|++|.+.+..+..|.++++|+.|+|++|.+.+.
T Consensus 192 L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 192 LAMC-NLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270 (440)
T ss_dssp CTTS-CCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred CCCC-cCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence 9997 56677753 36899999999999988 56799999999999999999998899999999999999999999888
Q ss_pred chhhhcCCCCCCEEEecCCCcc
Q 006695 254 FPEILEKMESVKCISLERTAIT 275 (635)
Q Consensus 254 ~~~~l~~l~~L~~L~L~~n~l~ 275 (635)
.+..+..+++|+.|+|++|.+.
T Consensus 271 ~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 271 PHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTTTSSCTTCCEEECCSSCEE
T ss_pred ChhHhccccCCCEEEcCCCCcc
Confidence 8888899999999999999876
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=4.5e-23 Score=212.02 Aligned_cols=243 Identities=19% Similarity=0.193 Sum_probs=170.5
Q ss_pred cEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCceEEEcCCCCCccc---cccCCCC
Q 006695 25 RFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENLVKLNLPYSKVVQI---WEGKKRA 99 (635)
Q Consensus 25 ~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~l---~~~~~~l 99 (635)
+.++.+++.++ .+|.++ +.+|++|++++|.++.+|.. | .+++|++|++++|.++.+ +..+..+
T Consensus 10 ~~l~c~~~~l~---------~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 77 (306)
T 2z66_A 10 TEIRCNSKGLT---------SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77 (306)
T ss_dssp TEEECCSSCCS---------SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC
T ss_pred CEEEcCCCCcc---------cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccc
Confidence 45666666665 333332 23588888888888888876 4 678888888888888755 4555667
Q ss_pred CCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccC-ccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecC
Q 006695 100 FKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVP-SSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFS 178 (635)
Q Consensus 100 ~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~-~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~ 178 (635)
++|++|+|++|.+....+.+..+++|++|++++|......+ ..+..+++|++|++++|......+..+
T Consensus 78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----------- 146 (306)
T 2z66_A 78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF----------- 146 (306)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT-----------
T ss_pred cccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc-----------
Confidence 88888888888755433347778888888888875443333 467788888888888776433333322
Q ss_pred CCCCCCccCcccCCcceEEeccccccc--cCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchh
Q 006695 179 SCFNLTEFPQISGNITDLILSETAIQE--VPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPE 256 (635)
Q Consensus 179 ~c~~l~~~p~~~~~L~~L~L~~n~i~~--lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~ 256 (635)
..+++|++|++++|.+++ +|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+.
T Consensus 147 ---------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 147 ---------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp ---------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred ---------ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence 112455666666666664 677788888888888888888777777888888888888888887777666
Q ss_pred hhcCCCCCCEEEecCCCccccC-chhcccccchhhccCC-CCccEEEcCCCCCCc
Q 006695 257 ILEKMESVKCISLERTAITELP-SSFANLEGLKDLYIGG-SSLRQLNLSRNDSES 309 (635)
Q Consensus 257 ~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~l~~~~-~~L~~L~Ls~n~~~~ 309 (635)
.+..+++|+.|++++|.++..+ ..+ ..+ ++|+.|+|++|.+..
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~----------~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQEL----------QHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSC----------CCCCTTCCEEECTTCCEEC
T ss_pred hccCcccCCEeECCCCCCcccCHHHH----------HhhhccCCEEEccCCCeec
Confidence 7888888888888888887643 332 333 478888888888643
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=5.2e-22 Score=215.67 Aligned_cols=244 Identities=18% Similarity=0.166 Sum_probs=198.6
Q ss_pred CcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCceEEEcCCCCCcccc-ccCCCCC
Q 006695 24 LRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENLVKLNLPYSKVVQIW-EGKKRAF 100 (635)
Q Consensus 24 L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~-~~~~~l~ 100 (635)
.+.++..+..++ .+|.++ +.++++|++++|.+..++.. | .+++|++|+|++|+++.++ ..+..++
T Consensus 56 ~~~v~c~~~~l~---------~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 123 (452)
T 3zyi_A 56 FSKVVCTRRGLS---------EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA 123 (452)
T ss_dssp SCEEECCSSCCS---------SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CcEEEECCCCcC---------ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcc
Confidence 456666666655 344433 35699999999999988654 6 7999999999999999886 6689999
Q ss_pred CCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCC
Q 006695 101 KLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSS 179 (635)
Q Consensus 101 ~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~ 179 (635)
+|++|+|++|++....++ +..+++|++|+|++|......+..+..+++|+.|++++|+.++.++...
T Consensus 124 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~------------ 191 (452)
T 3zyi_A 124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA------------ 191 (452)
T ss_dssp TCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT------------
T ss_pred cCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhh------------
Confidence 999999999997655554 8899999999999997665556679999999999999988888777532
Q ss_pred CCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhc
Q 006695 180 CFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILE 259 (635)
Q Consensus 180 c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~ 259 (635)
+ ..+.+|++|++++|.++.+| .+..+++|+.|+|++|.+.+..|..|.++++|+.|++++|.+.+..+..|.
T Consensus 192 ---~----~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 263 (452)
T 3zyi_A 192 ---F----EGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD 263 (452)
T ss_dssp ---T----TTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ---c----cCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhc
Confidence 0 11245666666777777775 477889999999999999888888999999999999999998888888899
Q ss_pred CCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCC
Q 006695 260 KMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSE 308 (635)
Q Consensus 260 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~ 308 (635)
.+++|+.|+|++|+++.+|... +..+++|+.|+|++|.+.
T Consensus 264 ~l~~L~~L~L~~N~l~~~~~~~---------~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 264 GLASLVELNLAHNNLSSLPHDL---------FTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECCSSCCSCCCTTS---------STTCTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCCCcCCccChHH---------hccccCCCEEEccCCCcC
Confidence 9999999999999999887632 355688999999999854
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=9.3e-24 Score=218.43 Aligned_cols=239 Identities=14% Similarity=0.104 Sum_probs=185.0
Q ss_pred CCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCC
Q 006695 101 KLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSS 179 (635)
Q Consensus 101 ~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~ 179 (635)
+++.++++++.+...++. +..+++|++|+|++|......|..+..+++|+.|++++|......+ +
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------~-- 76 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD------------L-- 76 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE------------E--
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh------------h--
Confidence 355556666654322222 4556789999999987766666788899999999998876332211 1
Q ss_pred CCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhc
Q 006695 180 CFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILE 259 (635)
Q Consensus 180 c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~ 259 (635)
..+++|++|++++|.+++++. .++|++|++++|.+.+..+. .+++|++|++++|.+.+..+..+.
T Consensus 77 --------~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~ 141 (317)
T 3o53_A 77 --------ESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG 141 (317)
T ss_dssp --------TTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTG
T ss_pred --------hhcCCCCEEECcCCccccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhh
Confidence 123567888888888887763 48999999999998776554 468899999999999888888899
Q ss_pred CCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCC--C
Q 006695 260 KMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE--L 337 (635)
Q Consensus 260 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~--l 337 (635)
.+++|+.|++++|.++.++... +...+++|++|+|++|.++.+|. ...+++|++|+|++|++.+..+. .
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~ 212 (317)
T 3o53_A 142 CRSRVQYLDLKLNEIDTVNFAE--------LAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQS 212 (317)
T ss_dssp GGSSEEEEECTTSCCCEEEGGG--------GGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGG
T ss_pred ccCCCCEEECCCCCCCcccHHH--------HhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCcchhhhcc
Confidence 9999999999999999764321 12346899999999999999974 44699999999999877654343 3
Q ss_pred CCccceecccccccccccCccccCccccchhhhhhhhhccc
Q 006695 338 PQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNS 378 (635)
Q Consensus 338 ~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~ 378 (635)
+++|+.|++++|.. +.+|..+..+++|+.+++++|++.+.
T Consensus 213 l~~L~~L~L~~N~l-~~l~~~~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 213 AAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp GTTCSEEECTTSCC-CEECTTCCCCTTCCEEECTTCCCBHH
T ss_pred cCcccEEECcCCcc-cchhhHhhcCCCCCEEEccCCCccCc
Confidence 57999999999965 46888899999999999999999844
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=2.6e-23 Score=214.58 Aligned_cols=238 Identities=20% Similarity=0.167 Sum_probs=124.3
Q ss_pred cceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCcc--ccccCC-------CCCCCcEEEccCCCCCCCCCC-C--CCCC
Q 006695 56 ELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQ--IWEGKK-------RAFKLKYVDIHNSQYLIRMPD-L--SETP 123 (635)
Q Consensus 56 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~--l~~~~~-------~l~~L~~L~Ls~n~~~~~~p~-l--~~l~ 123 (635)
+|+.|++.+|.+ .+|..+. ..|+.|++++|.++. ++..+. .+++|++|+|++|.+....|. + ..++
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 121 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred CceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence 366677777777 6665431 117777777777753 344333 567777777777776655553 3 6677
Q ss_pred CCCEEeecCCCCCcccCccccCC-----CCCCEEeecCCCCCCccCCCC-CCCCCcEEecCCCCCCCccCcccCCcceEE
Q 006695 124 NLERTNLKNCINLTCVPSSVQNF-----NHLSMLCFEGCKSLRSFPSNL-HFMSPIKIDFSSCFNLTEFPQISGNITDLI 197 (635)
Q Consensus 124 ~L~~L~L~~n~~l~~~~~~i~~l-----~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~ 197 (635)
+|++|+|++|...+. |..++.+ ++|++|++++|+.....+..+ .++ +|++|+
T Consensus 122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~---------------------~L~~L~ 179 (312)
T 1wwl_A 122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP---------------------ALSTLD 179 (312)
T ss_dssp CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS---------------------SCCEEE
T ss_pred CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC---------------------CCCEEE
Confidence 777777777754444 5555554 566666666654322222221 222 233333
Q ss_pred eccccccc---cCccc--ccCCCccEEEeecccccc--cch-hcccCCCCCcEEecCCCCCCCcch-hhhcCCCCCCEEE
Q 006695 198 LSETAIQE---VPSSI--ECLTNLEKLYINRCMRLK--RLS-TSICKLKSLHVLVLDDCSKLERFP-EILEKMESVKCIS 268 (635)
Q Consensus 198 L~~n~i~~---lp~~~--~~l~~L~~L~L~~n~~~~--~lp-~~~~~l~~L~~L~Ls~n~~~~~~~-~~l~~l~~L~~L~ 268 (635)
+++|.+.. +|..+ +.+++|++|++++|.+.+ .++ ..+..+++|++|++++|.+.+..| ..+..+++|+.|+
T Consensus 180 Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 259 (312)
T 1wwl_A 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259 (312)
T ss_dssp CCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEE
T ss_pred CCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEE
Confidence 33333221 12222 445555555555555441 111 223345555555555555544442 2334455555555
Q ss_pred ecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCC
Q 006695 269 LERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSM 330 (635)
Q Consensus 269 L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~ 330 (635)
+++|.|+.+|..+ . ++|+.|+|++|+++.+|. +..+++|++|+|++|++
T Consensus 260 Ls~N~l~~ip~~~----------~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 260 LSFTGLKQVPKGL----------P--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CTTSCCSSCCSSC----------C--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred CCCCccChhhhhc----------c--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCC
Confidence 5555555555432 0 455555555555555544 55555555555555544
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.6e-22 Score=221.57 Aligned_cols=213 Identities=12% Similarity=0.078 Sum_probs=110.2
Q ss_pred CceEEEcCCCCCcccc-ccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecC
Q 006695 78 NLVKLNLPYSKVVQIW-EGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEG 156 (635)
Q Consensus 78 ~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~ 156 (635)
+|++|+|++|.+..++ ..+..+++|++|+|++|.+....| ++.+++|++|+|++|.. ..++ ..++|+.|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~----~~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV-QELL----VGPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEE-EEEE----ECTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcC-CCCC----CCCCcCEEECcC
Confidence 4555555555555443 344555555555555554333222 44555555555555422 1111 113444444444
Q ss_pred CCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEecccccccc-CcccccCCCccEEEeecccccccchhccc
Q 006695 157 CKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEV-PSSIECLTNLEKLYINRCMRLKRLSTSIC 235 (635)
Q Consensus 157 ~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~~lp~~~~ 235 (635)
|. .....+..+++|+.|++++|.++.+ |..++.+++|+.|+|++|.+.+..|..+.
T Consensus 109 N~-----------------------l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 165 (487)
T 3oja_A 109 NN-----------------------ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (487)
T ss_dssp SC-----------------------CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred Cc-----------------------CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh
Confidence 32 2111222234566666666666655 33456666666666666666665555554
Q ss_pred -CCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccc
Q 006695 236 -KLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASI 314 (635)
Q Consensus 236 -~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l 314 (635)
.+++|+.|+|++|.+.+.. ....+++|+.|+|++|.++.+|..+. .+++|+.|+|++|.+..+|..+
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~----------~l~~L~~L~Ls~N~l~~lp~~l 233 (487)
T 3oja_A 166 ASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPEFQ----------SAAGVTWISLRNNKLVLIEKAL 233 (487)
T ss_dssp GGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGGGG----------GGTTCSEEECTTSCCCEECTTC
T ss_pred hhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCHhHc----------CCCCccEEEecCCcCcccchhh
Confidence 4666666666666554431 12245666666666666665554432 2355666666666666666556
Q ss_pred cCCCCccEEeccCCCCC
Q 006695 315 TQLSQLRSLHLKDCSML 331 (635)
Q Consensus 315 ~~l~~L~~L~L~~n~~l 331 (635)
..+++|+.|++++|++.
T Consensus 234 ~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 234 RFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCCTTCCEEECTTCCBC
T ss_pred ccCCCCCEEEcCCCCCc
Confidence 66666666666665554
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.87 E-value=1.6e-23 Score=216.16 Aligned_cols=244 Identities=20% Similarity=0.219 Sum_probs=116.3
Q ss_pred CCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCC-CCCCC-CC-------CCCCCCEEeecCCCCCcccCccc--cC
Q 006695 77 ENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYL-IRMPD-LS-------ETPNLERTNLKNCINLTCVPSSV--QN 145 (635)
Q Consensus 77 ~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~-~~~p~-l~-------~l~~L~~L~L~~n~~l~~~~~~i--~~ 145 (635)
.+|+.|++++|.+ .+|..+... |+.|+|++|.+. ..+|+ +. ++++|++|+|++|...+.+|..+ +.
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 4455566666666 555544332 555566655542 22332 11 35555555555554444444443 44
Q ss_pred CCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccC-----CCccEEE
Q 006695 146 FNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECL-----TNLEKLY 220 (635)
Q Consensus 146 l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l-----~~L~~L~ 220 (635)
+++|++|++++| .++.+|..++.+ ++|++|+
T Consensus 120 l~~L~~L~Ls~N--------------------------------------------~l~~~~~~~~~l~~~~~~~L~~L~ 155 (312)
T 1wwl_A 120 GPDLNILNLRNV--------------------------------------------SWATRDAWLAELQQWLKPGLKVLS 155 (312)
T ss_dssp SCCCSEEEEESC--------------------------------------------BCSSSSSHHHHHHTTCCTTCCEEE
T ss_pred CCCccEEEccCC--------------------------------------------CCcchhHHHHHHHHhhcCCCcEEE
Confidence 555555555444 333333333333 4555555
Q ss_pred eecccccccchhcccCCCCCcEEecCCCCCCCc--chhhh--cCCCCCCEEEecCCCccccCchhcccccchhhccCCCC
Q 006695 221 INRCMRLKRLSTSICKLKSLHVLVLDDCSKLER--FPEIL--EKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSS 296 (635)
Q Consensus 221 L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~--~~~~l--~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~ 296 (635)
+++|.+.+..+..++.+++|++|++++|.+.+. ++..+ ..+++|++|++++|.++.++... ...+..+++
T Consensus 156 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~~~~l~~ 229 (312)
T 1wwl_A 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC------SALAAARVQ 229 (312)
T ss_dssp EESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHH------HHHHHTTCC
T ss_pred eeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHH------HHHHhcCCC
Confidence 555554444444455555555555555544332 12222 44555555555555554332110 011223345
Q ss_pred ccEEEcCCCCCCccc--ccccCCCCccEEeccCCCCCCcCCC-CCCccceecccccccccccCccccCccccchhhhhhh
Q 006695 297 LRQLNLSRNDSESLP--ASITQLSQLRSLHLKDCSMLSSLPE-LPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKA 373 (635)
Q Consensus 297 L~~L~Ls~n~~~~lp--~~l~~l~~L~~L~L~~n~~l~~lp~-l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n 373 (635)
|+.|+|++|.++..+ ..+..+++|++|+|++|.+. .+|. .+++|++|++++|...+ +|. +..+++|+.+++++|
T Consensus 230 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N~l~~-~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYNRLDR-NPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCCSEEEEEECCSSCCCS-CCC-TTTSCEEEEEECTTC
T ss_pred CCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhccCCceEEECCCCCCCC-Chh-HhhCCCCCEEeccCC
Confidence 555555555554433 22344555555555555443 4443 22455555555554332 243 555666666666666
Q ss_pred hhc
Q 006695 374 TFL 376 (635)
Q Consensus 374 ~~~ 376 (635)
++.
T Consensus 307 ~l~ 309 (312)
T 1wwl_A 307 PFL 309 (312)
T ss_dssp TTT
T ss_pred CCC
Confidence 553
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=4.3e-22 Score=218.09 Aligned_cols=234 Identities=15% Similarity=0.140 Sum_probs=197.4
Q ss_pred CCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEE
Q 006695 97 KRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKI 175 (635)
Q Consensus 97 ~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L 175 (635)
..+++|++|+|++|.+....| .++.+++|+.|+|++|...+..| ++.+++|++|++++|. ++.+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l------------ 95 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQEL------------ 95 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEE------------
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCC------------
Confidence 345589999999998776655 58899999999999987655554 8888888888888864 2222
Q ss_pred ecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcch
Q 006695 176 DFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFP 255 (635)
Q Consensus 176 ~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~ 255 (635)
+. .++|++|++++|.++.++.. .+++|+.|++++|.+.+..|..++.+++|+.|+|++|.+.+..|
T Consensus 96 -----------~~-~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 96 -----------LV-GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp -----------EE-CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred -----------CC-CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence 11 16899999999999988754 57899999999999999889999999999999999999999888
Q ss_pred hhhc-CCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcC
Q 006695 256 EILE-KMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSL 334 (635)
Q Consensus 256 ~~l~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~l 334 (635)
..+. .+++|+.|+|++|.++.+|.. ..+++|+.|+|++|.++.+|..+..+++|+.|+|++|.+.+ +
T Consensus 162 ~~l~~~l~~L~~L~Ls~N~l~~~~~~-----------~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-l 229 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYNFIYDVKGQ-----------VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-I 229 (487)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEECC-----------CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-E
T ss_pred HHHhhhCCcccEEecCCCcccccccc-----------ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-c
Confidence 8776 799999999999999987542 34689999999999999999899999999999999988764 6
Q ss_pred CCC---CCccceecccccccc-cccCccccCccccchhhhh
Q 006695 335 PEL---PQSLELLDAENCKQL-QFIPEILSGLEEVDASVLE 371 (635)
Q Consensus 335 p~l---~~sL~~L~l~~c~~l-~~~~~~~~~L~~L~~l~L~ 371 (635)
|.. +++|+.|++++|+.. ..+|..+..++.|+.+++.
T Consensus 230 p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 653 478999999999887 5777888899999999887
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=1.1e-20 Score=191.19 Aligned_cols=219 Identities=15% Similarity=0.165 Sum_probs=142.7
Q ss_pred eecCCCCCCCCCCCCCCCCceEEEcCCCCCccccc-cCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCc
Q 006695 60 LHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWE-GKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLT 137 (635)
Q Consensus 60 L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~ 137 (635)
.+..+..+..+|..+ +++|++|++++|+++.++. .+..+++|++|+|++|.+....+ .+.++++|++|++++|....
T Consensus 12 ~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (276)
T 2z62_A 12 YQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90 (276)
T ss_dssp EECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence 444555566666654 2567888888888877765 56777788888888777554444 36777777777777776555
Q ss_pred ccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCc-ccccCCCc
Q 006695 138 CVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPS-SIECLTNL 216 (635)
Q Consensus 138 ~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~-~~~~l~~L 216 (635)
..+..+..+++|++|++++|. ++.++. .++.+++|
T Consensus 91 ~~~~~~~~l~~L~~L~l~~n~--------------------------------------------l~~~~~~~~~~l~~L 126 (276)
T 2z62_A 91 LALGAFSGLSSLQKLVAVETN--------------------------------------------LASLENFPIGHLKTL 126 (276)
T ss_dssp ECTTTTTTCTTCCEEECTTSC--------------------------------------------CCCSTTCCCTTCTTC
T ss_pred cChhhhcCCccccEEECCCCC--------------------------------------------ccccCchhcccCCCC
Confidence 555566666666666666543 222222 24555666
Q ss_pred cEEEeeccccccc-chhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCC----EEEecCCCccccCchhcccccchhhc
Q 006695 217 EKLYINRCMRLKR-LSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVK----CISLERTAITELPSSFANLEGLKDLY 291 (635)
Q Consensus 217 ~~L~L~~n~~~~~-lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~----~L~L~~n~l~~lp~~~~~l~~L~~l~ 291 (635)
++|++++|.+.+. +|..+..+++|++|++++|.+.+..+..+..+++|+ .|++++|.++.++...
T Consensus 127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~---------- 196 (276)
T 2z62_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA---------- 196 (276)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTS----------
T ss_pred CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccc----------
Confidence 6666666655442 455666666666666666666655555555555555 7888888888776543
Q ss_pred cCCCCccEEEcCCCCCCccccc-ccCCCCccEEeccCCCCCCc
Q 006695 292 IGGSSLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSMLSS 333 (635)
Q Consensus 292 ~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~l~~ 333 (635)
....+|+.|+|++|.++.+|.. +..+++|++|+|++|++...
T Consensus 197 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 197 FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp SCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred cCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 2234788888888888888765 47788888888888776543
No 70
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=3.6e-20 Score=188.88 Aligned_cols=200 Identities=19% Similarity=0.188 Sum_probs=139.2
Q ss_pred CCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEE
Q 006695 97 KRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKI 175 (635)
Q Consensus 97 ~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L 175 (635)
.++++|+.++++++.+. .+| ++. ++|+.|+|++|......+..+..+++|+.|++++|. ++.++..
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~--------- 73 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD--------- 73 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC---------
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC---------
Confidence 34445555555555433 222 222 455666666665554455566666666666666654 2222211
Q ss_pred ecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcch
Q 006695 176 DFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFP 255 (635)
Q Consensus 176 ~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~ 255 (635)
..+++|++|++++|.++.+|..+..+++|++|++++|.+.+..+..|.++++|++|+|++|.+.+..+
T Consensus 74 ------------~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 141 (290)
T 1p9a_G 74 ------------GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141 (290)
T ss_dssp ------------SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred ------------CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh
Confidence 12345677777777788888888888889999999888887777778888889999998888877777
Q ss_pred hhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCC
Q 006695 256 EILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSM 330 (635)
Q Consensus 256 ~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~ 330 (635)
..|..+++|+.|++++|+|+.+|..+ +..+++|+.|+|++|+++.+|..+..+.+|+.|+|++|+.
T Consensus 142 ~~~~~l~~L~~L~L~~N~l~~l~~~~---------~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 142 GLLTPTPKLEKLSLANNNLTELPAGL---------LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTTTTCTTCCEEECTTSCCSCCCTTT---------TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred hhcccccCCCEEECCCCcCCccCHHH---------hcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 77888888888888888888887632 3456788888888888888888877777788777777654
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=2.3e-19 Score=180.85 Aligned_cols=111 Identities=21% Similarity=0.285 Sum_probs=64.2
Q ss_pred ccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhh
Q 006695 211 ECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDL 290 (635)
Q Consensus 211 ~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l 290 (635)
..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|.. .
T Consensus 106 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------~ 176 (270)
T 2o6q_A 106 DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG---------A 176 (270)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT---------T
T ss_pred ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh---------H
Confidence 4445555555555555444444455556666666666555544444556666666666666666665542 1
Q ss_pred ccCCCCccEEEcCCCCCCccccc-ccCCCCccEEeccCCCC
Q 006695 291 YIGGSSLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSM 330 (635)
Q Consensus 291 ~~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~ 330 (635)
+..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|+.
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 23346666666666666666543 56666777777766654
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=5e-19 Score=178.42 Aligned_cols=197 Identities=17% Similarity=0.182 Sum_probs=111.9
Q ss_pred ceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccc-cCCCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCC
Q 006695 57 LRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWE-GKKRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCI 134 (635)
Q Consensus 57 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~ 134 (635)
.+.++++++.++.+|..+. .+|++|++++|+++.++. .+..+++|++|+|++|.+....+. +..+++|++|++++|.
T Consensus 18 ~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence 5566666666666665543 466677777776666653 456666667777666664433332 4556666666666664
Q ss_pred CCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCc-ccccC
Q 006695 135 NLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPS-SIECL 213 (635)
Q Consensus 135 ~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~-~~~~l 213 (635)
.....+..+..+++|++|++++| .++.++. .++.+
T Consensus 97 l~~~~~~~~~~l~~L~~L~l~~n--------------------------------------------~l~~~~~~~~~~l 132 (270)
T 2o6q_A 97 LQALPIGVFDQLVNLAELRLDRN--------------------------------------------QLKSLPPRVFDSL 132 (270)
T ss_dssp CCCCCTTTTTTCSSCCEEECCSS--------------------------------------------CCCCCCTTTTTTC
T ss_pred CCcCCHhHcccccCCCEEECCCC--------------------------------------------ccCeeCHHHhCcC
Confidence 43333333445555555555443 3333332 24555
Q ss_pred CCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccC
Q 006695 214 TNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIG 293 (635)
Q Consensus 214 ~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~ 293 (635)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|.. .+..
T Consensus 133 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---------~~~~ 203 (270)
T 2o6q_A 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG---------AFDS 203 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT---------TTTT
T ss_pred cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH---------Hhcc
Confidence 5555555555555544444455566666666666655555555566666666666666666665542 1234
Q ss_pred CCCccEEEcCCCCC
Q 006695 294 GSSLRQLNLSRNDS 307 (635)
Q Consensus 294 ~~~L~~L~Ls~n~~ 307 (635)
+++|+.|+|++|.+
T Consensus 204 l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 204 LEKLKMLQLQENPW 217 (270)
T ss_dssp CTTCCEEECCSSCB
T ss_pred ccCCCEEEecCCCe
Confidence 46666677766664
No 73
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.9e-19 Score=188.72 Aligned_cols=233 Identities=23% Similarity=0.323 Sum_probs=148.8
Q ss_pred eEeecCCCCCCCCCCCCCCCCceEEEcCCCCCcccccc-CCCCCCCcEEEccCCCCCCCCCC--CCCCCCCCEEe-ecCC
Q 006695 58 RYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEG-KKRAFKLKYVDIHNSQYLIRMPD--LSETPNLERTN-LKNC 133 (635)
Q Consensus 58 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~-L~~n 133 (635)
+.++.+++.++++|..+ ++++++|+|++|+|+.+|.+ +.++++|++|+|++|++...+|. |.++++|+++. +.+|
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 56777888888999876 46899999999999999864 79999999999999998776663 78899888754 4455
Q ss_pred CCCcccCccccCCCCCCEEeecCCCCCCccCCCC--CCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcc-c
Q 006695 134 INLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNL--HFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSS-I 210 (635)
Q Consensus 134 ~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~-~ 210 (635)
......|..|..+++|++|++++|+ +..+|... ....+..+++.++.. +..+|.. +
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~--------------------i~~l~~~~f 149 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNIN--------------------IHTIERNSF 149 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTT--------------------CCEECTTSS
T ss_pred cccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccc--------------------cccccccch
Confidence 4444446778999999999998875 44444322 334444555544444 4444432 3
Q ss_pred ccC-CCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchh-hhcCCCCCCEEEecCCCccccCchhcccccch
Q 006695 211 ECL-TNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPE-ILEKMESVKCISLERTAITELPSSFANLEGLK 288 (635)
Q Consensus 211 ~~l-~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~-~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~ 288 (635)
..+ ..++.|++++|.+.. ++.......+|+.|++++++.++.+|. .|..+++|+.|++++|+|+.+|..
T Consensus 150 ~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~-------- 220 (350)
T 4ay9_X 150 VGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY-------- 220 (350)
T ss_dssp TTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--------
T ss_pred hhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--------
Confidence 333 246666676666543 333333455667777766555555553 456666666666666666666642
Q ss_pred hhccCCCCccEEEcCCCC-CCcccccccCCCCccEEecc
Q 006695 289 DLYIGGSSLRQLNLSRND-SESLPASITQLSQLRSLHLK 326 (635)
Q Consensus 289 ~l~~~~~~L~~L~Ls~n~-~~~lp~~l~~l~~L~~L~L~ 326 (635)
.+.+|+.|.+.++. ++.+| .+..+++|+.+++.
T Consensus 221 ----~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 221 ----GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLT 254 (350)
T ss_dssp ----SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECS
T ss_pred ----hhccchHhhhccCCCcCcCC-CchhCcChhhCcCC
Confidence 12344444443332 44454 24455555555544
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.82 E-value=3.4e-19 Score=180.11 Aligned_cols=217 Identities=19% Similarity=0.199 Sum_probs=146.3
Q ss_pred EEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCC
Q 006695 81 KLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKS 159 (635)
Q Consensus 81 ~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~ 159 (635)
..+..+.++..+|..+. ++|++|++++|.+....+ .+.++++|++|++++|......+..+..+++|++|++++
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~--- 85 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG--- 85 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT---
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC---
Confidence 45556666777776553 467777777777554444 466677777777777644443333455555555555544
Q ss_pred CCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccC-cccccCCCccEEEeecccccccchhcccCCC
Q 006695 160 LRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVP-SSIECLTNLEKLYINRCMRLKRLSTSICKLK 238 (635)
Q Consensus 160 l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~ 238 (635)
|.++.++ ..+.++++|++|++++|.+.+..+..+..++
T Consensus 86 -----------------------------------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 124 (276)
T 2z62_A 86 -----------------------------------------NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (276)
T ss_dssp -----------------------------------------CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred -----------------------------------------CccCccChhhhcCCccccEEECCCCCccccCchhcccCC
Confidence 4444444 4578889999999999988877776788899
Q ss_pred CCcEEecCCCCCCC-cchhhhcCCCCCCEEEecCCCccccCc-hhcccccchhhccCCCCcc-EEEcCCCCCCccccccc
Q 006695 239 SLHVLVLDDCSKLE-RFPEILEKMESVKCISLERTAITELPS-SFANLEGLKDLYIGGSSLR-QLNLSRNDSESLPASIT 315 (635)
Q Consensus 239 ~L~~L~Ls~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~l~~~~~~L~-~L~Ls~n~~~~lp~~l~ 315 (635)
+|++|++++|.+.+ .+|..+..+++|+.|++++|.++.++. .+..+. .++.|. .|++++|.++.++....
T Consensus 125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-------~L~~l~l~L~ls~n~l~~~~~~~~ 197 (276)
T 2z62_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-------QMPLLNLSLDLSLNPMNFIQPGAF 197 (276)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH-------TCTTCCEEEECCSSCCCEECTTSS
T ss_pred CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh-------hccccceeeecCCCcccccCcccc
Confidence 99999999988876 368888999999999999999887763 333321 223333 78888888888877666
Q ss_pred CCCCccEEeccCCCCCCcCCCC---CCccceecccccc
Q 006695 316 QLSQLRSLHLKDCSMLSSLPEL---PQSLELLDAENCK 350 (635)
Q Consensus 316 ~l~~L~~L~L~~n~~l~~lp~l---~~sL~~L~l~~c~ 350 (635)
...+|++|++++|.+.+..+.. .++|+.|++++|+
T Consensus 198 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 198 KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 6667888888887654333222 3455666666554
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.82 E-value=3e-20 Score=187.63 Aligned_cols=118 Identities=18% Similarity=0.241 Sum_probs=64.6
Q ss_pred ccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc
Q 006695 234 ICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS 313 (635)
Q Consensus 234 ~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~ 313 (635)
+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|... +..+++|+.|++++|+++.+|..
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------~~~l~~L~~L~L~~N~l~~~~~~ 199 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV---------FDKLTQLKDLRLYQNQLKSVPDG 199 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---------TTTCTTCCEEECCSSCCSCCCTT
T ss_pred hccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH---------hcCCccCCEEECCCCcCCccCHH
Confidence 344444444444444444333344445555555555555555444321 23345566666666665555443
Q ss_pred -ccCCCCccEEeccCCCCCCcCCCCCCccceecccccccccccCccccCccc
Q 006695 314 -ITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGLEE 364 (635)
Q Consensus 314 -l~~l~~L~~L~L~~n~~l~~lp~l~~sL~~L~l~~c~~l~~~~~~~~~L~~ 364 (635)
+..+++|++|++++|+..... ++|+.|++++|...+.+|..+..+..
T Consensus 200 ~~~~l~~L~~L~l~~N~~~~~~----~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 200 VFDRLTSLQYIWLHDNPWDCTC----PGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTTCTTCCEEECCSSCBCCCT----TTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHhCCcCCCEEEccCCCccccC----cHHHHHHHHHHhCCCcccCcccccCC
Confidence 466677777777776655443 35677777777766677766665443
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.82 E-value=6.9e-20 Score=184.98 Aligned_cols=226 Identities=16% Similarity=0.140 Sum_probs=147.9
Q ss_pred ceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCC
Q 006695 57 LRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINL 136 (635)
Q Consensus 57 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l 136 (635)
+..+.+.++.+..+.....+++|+.|++++|.++.++ ++..+++|++|++++|.+. .++.+..+++|++|++++|...
T Consensus 21 l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~n~l~ 98 (272)
T 3rfs_A 21 TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLH-DISALKELTNLTYLILTGNQLQ 98 (272)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCC-CCGGGTTCTTCCEEECTTSCCC
T ss_pred HHHHHhcCcccccccccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCC-CchhhcCCCCCCEEECCCCccC
Confidence 3344444444433322224555666666666655543 3555556666666655532 2344555555555555555333
Q ss_pred cccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcc-cccCCC
Q 006695 137 TCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSS-IECLTN 215 (635)
Q Consensus 137 ~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~-~~~l~~ 215 (635)
+..+..++.+++| ++|++++|.++.++.. ++.+++
T Consensus 99 ~~~~~~~~~l~~L--------------------------------------------~~L~L~~n~l~~~~~~~~~~l~~ 134 (272)
T 3rfs_A 99 SLPNGVFDKLTNL--------------------------------------------KELVLVENQLQSLPDGVFDKLTN 134 (272)
T ss_dssp CCCTTTTTTCTTC--------------------------------------------CEEECTTSCCCCCCTTTTTTCTT
T ss_pred ccChhHhcCCcCC--------------------------------------------CEEECCCCcCCccCHHHhccCCC
Confidence 3222233344444 4444444445555443 678889
Q ss_pred ccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCC
Q 006695 216 LEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGS 295 (635)
Q Consensus 216 L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~ 295 (635)
|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|.. .+..++
T Consensus 135 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---------~~~~l~ 205 (272)
T 3rfs_A 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG---------VFDRLT 205 (272)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT---------TTTTCT
T ss_pred CCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH---------HHhCCc
Confidence 99999999988877777788899999999999988877777788999999999999999987753 235568
Q ss_pred CccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCCCCCccce
Q 006695 296 SLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLEL 343 (635)
Q Consensus 296 ~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~l~~sL~~ 343 (635)
+|+.|++++|.+. ..+++|+.|++..|.+.+.+|....++..
T Consensus 206 ~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 206 SLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 8999999999764 34668888999998888888876655544
No 77
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=1.3e-21 Score=219.76 Aligned_cols=350 Identities=14% Similarity=0.092 Sum_probs=195.9
Q ss_pred cCCCCCcEEEeecCCCCCCcccceeeecCCcccC-CCccceEeecCCCCCC---CCCCCC-CCCCceEEEcCCCCCccc-
Q 006695 19 ANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEY-LPNELRYLHWHEYPSK---ALPFDF-EPENLVKLNLPYSKVVQI- 92 (635)
Q Consensus 19 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~-l~~~L~~L~l~~~~l~---~lp~~~-~l~~L~~L~L~~n~l~~l- 92 (635)
..+++|+.|+|++|.+++. .+..+.. .+.+|++|++.+|... .++... .+++|++|+|++|.+...
T Consensus 109 ~~~~~L~~L~L~~~~i~~~--------~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~ 180 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDL--------DLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD 180 (592)
T ss_dssp HHCTTCCEEEEESCBCCHH--------HHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCC
T ss_pred hhCCCCCeEEeeccEecHH--------HHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcc
Confidence 3789999999998866511 1111211 2334888888777521 111111 467888888888876532
Q ss_pred ----cccCCCCCCCcEEEccCCCCCCC----CCC-CCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCc-
Q 006695 93 ----WEGKKRAFKLKYVDIHNSQYLIR----MPD-LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRS- 162 (635)
Q Consensus 93 ----~~~~~~l~~L~~L~Ls~n~~~~~----~p~-l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~- 162 (635)
+.....+++|++|++++|.+... ++. +.++++|+.|++++|.. ..++..+..+++|+.|+++++.....
T Consensus 181 ~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~ 259 (592)
T 3ogk_B 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGM 259 (592)
T ss_dssp SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCTTC
T ss_pred hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccccch
Confidence 22345677888888888875421 111 45678888888888743 34666777778888888865332211
Q ss_pred --cCCCC-CCCCCcEEecCCCCCCCccCc---ccCCcceEEeccccccc--cCcccccCCCccEEEeecccccccchhcc
Q 006695 163 --FPSNL-HFMSPIKIDFSSCFNLTEFPQ---ISGNITDLILSETAIQE--VPSSIECLTNLEKLYINRCMRLKRLSTSI 234 (635)
Q Consensus 163 --lp~~~-~l~~L~~L~l~~c~~l~~~p~---~~~~L~~L~L~~n~i~~--lp~~~~~l~~L~~L~L~~n~~~~~lp~~~ 234 (635)
.+..+ .+++|+.++++++ ....+|. ..++|++|++++|.++. ++..+..+++|++|+++++...+.++..+
T Consensus 260 ~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~ 338 (592)
T 3ogk_B 260 PEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA 338 (592)
T ss_dssp TTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH
T ss_pred HHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHH
Confidence 11111 5566666666653 2222332 23466667776666542 22224556666666666332222333333
Q ss_pred cCCCCCcEEecCC----------CCCCCc--chhhhcCCCCCCEEEecCCCccc-cCchhcc-ccc--------------
Q 006695 235 CKLKSLHVLVLDD----------CSKLER--FPEILEKMESVKCISLERTAITE-LPSSFAN-LEG-------------- 286 (635)
Q Consensus 235 ~~l~~L~~L~Ls~----------n~~~~~--~~~~l~~l~~L~~L~L~~n~l~~-lp~~~~~-l~~-------------- 286 (635)
..+++|++|++++ |+..+. ++.....+++|+.|+++.|.++. .+..+.. +++
T Consensus 339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~ 418 (592)
T 3ogk_B 339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREER 418 (592)
T ss_dssp HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSC
T ss_pred HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcc
Confidence 4455566666652 332221 22223335555555554444441 1111111 111
Q ss_pred ---------chhhccCCCCccEEEcCCCC--CCc-ccccc-cCCCCccEEeccCCCCCC-cCC---CCCCccceeccccc
Q 006695 287 ---------LKDLYIGGSSLRQLNLSRND--SES-LPASI-TQLSQLRSLHLKDCSMLS-SLP---ELPQSLELLDAENC 349 (635)
Q Consensus 287 ---------L~~l~~~~~~L~~L~Ls~n~--~~~-lp~~l-~~l~~L~~L~L~~n~~l~-~lp---~l~~sL~~L~l~~c 349 (635)
++....++++|+.|++++|. ++. .+..+ ..+++|++|+|++|++.. .++ ...++|+.|++++|
T Consensus 419 l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp CSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred ccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence 11223456888888887544 321 22223 457889999999887654 223 23578999999999
Q ss_pred ccccc-cCccccCccccchhhhhhhhhccc
Q 006695 350 KQLQF-IPEILSGLEEVDASVLEKATFLNS 378 (635)
Q Consensus 350 ~~l~~-~~~~~~~L~~L~~l~L~~n~~~~~ 378 (635)
+.... ++.....+++|+.|+|++|++...
T Consensus 499 ~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 499 CFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 84322 344456788899999999987655
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=5.4e-19 Score=180.13 Aligned_cols=195 Identities=17% Similarity=0.178 Sum_probs=124.6
Q ss_pred ceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCcccc-ccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCC
Q 006695 57 LRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIW-EGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCIN 135 (635)
Q Consensus 57 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~ 135 (635)
++.+++.++.++.+|..+. ++|+.|++++|.++.++ ..+..+++|++|+|++|.+.. ++..+.+++|++|++++|.
T Consensus 12 l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~- 88 (290)
T 1p9a_G 12 HLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVDGTLPVLGTLDLSHNQ- 88 (290)
T ss_dssp CCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECCSCCTTCCEEECCSSC-
T ss_pred ccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCCCCCCcCCEEECCCCc-
Confidence 5555555555555554432 45666666666666553 345666666666666665332 2333455555555555552
Q ss_pred CcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccC-cccccCC
Q 006695 136 LTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVP-SSIECLT 214 (635)
Q Consensus 136 l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp-~~~~~l~ 214 (635)
+..+|..+..+++ |++|++++|.|+.+| ..+..++
T Consensus 89 l~~l~~~~~~l~~--------------------------------------------L~~L~l~~N~l~~l~~~~~~~l~ 124 (290)
T 1p9a_G 89 LQSLPLLGQTLPA--------------------------------------------LTVLDVSFNRLTSLPLGALRGLG 124 (290)
T ss_dssp CSSCCCCTTTCTT--------------------------------------------CCEEECCSSCCCCCCSSTTTTCT
T ss_pred CCcCchhhccCCC--------------------------------------------CCEEECCCCcCcccCHHHHcCCC
Confidence 2233433444444 444444445555554 3477778
Q ss_pred CccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCC
Q 006695 215 NLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGG 294 (635)
Q Consensus 215 ~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~ 294 (635)
+|++|+|++|.+.+..+..|..+++|+.|+|++|.+.+..+..+..+++|+.|++++|.++.+|..+. ..
T Consensus 125 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~----------~~ 194 (290)
T 1p9a_G 125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF----------GS 194 (290)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----------TT
T ss_pred CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhc----------cc
Confidence 88888888887776666667788888888888888776666677888899999999999988887653 34
Q ss_pred CCccEEEcCCCCCC
Q 006695 295 SSLRQLNLSRNDSE 308 (635)
Q Consensus 295 ~~L~~L~Ls~n~~~ 308 (635)
++|+.|+|++|.+.
T Consensus 195 ~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 195 HLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCSEEECCSCCBC
T ss_pred ccCCeEEeCCCCcc
Confidence 68889999998864
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=1.5e-19 Score=178.70 Aligned_cols=89 Identities=11% Similarity=0.104 Sum_probs=46.8
Q ss_pred CCCCCCCCCCCCceEEEcCCCCCccccc-cCCCCCCCcEEEccCCCCCCCCC--CCCCCCCCCEEeecC-CCCCcccCcc
Q 006695 67 SKALPFDFEPENLVKLNLPYSKVVQIWE-GKKRAFKLKYVDIHNSQYLIRMP--DLSETPNLERTNLKN-CINLTCVPSS 142 (635)
Q Consensus 67 l~~lp~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~-n~~l~~~~~~ 142 (635)
++.+|. -+.+|++|++++|+++.++. .+..+++|++|++++|+.++.++ .+.++++|++|++++ |......+..
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 556665 23466777777777766654 45566666666666665222222 255555566666555 3222222233
Q ss_pred ccCCCCCCEEeecCC
Q 006695 143 VQNFNHLSMLCFEGC 157 (635)
Q Consensus 143 i~~l~~L~~L~L~~~ 157 (635)
+..+++|+.|++++|
T Consensus 101 f~~l~~L~~L~l~~n 115 (239)
T 2xwt_C 101 LKELPLLKFLGIFNT 115 (239)
T ss_dssp EECCTTCCEEEEEEE
T ss_pred hCCCCCCCEEeCCCC
Confidence 444444444444443
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=1.9e-19 Score=177.97 Aligned_cols=205 Identities=17% Similarity=0.231 Sum_probs=145.9
Q ss_pred CCCCccCcccCCcceEEeccccccccCc-ccccCCCccEEEeeccc-ccccchhcccCCCCCcEEecCC-CCCCCcchhh
Q 006695 181 FNLTEFPQISGNITDLILSETAIQEVPS-SIECLTNLEKLYINRCM-RLKRLSTSICKLKSLHVLVLDD-CSKLERFPEI 257 (635)
Q Consensus 181 ~~l~~~p~~~~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~-~~~~lp~~~~~l~~L~~L~Ls~-n~~~~~~~~~ 257 (635)
..++.+|....++++|++++|.++.+|. .+.++++|++|++++|. +.+..+..|.++++|++|++++ |.+.+..+..
T Consensus 21 ~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 21 KDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred cCccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 3355666644578888888888888876 57888888888888886 5555555788888888888887 6666555567
Q ss_pred hcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCcc---EEEcCCC-CCCccccc-ccCCCCcc-EEeccCCCCC
Q 006695 258 LEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLR---QLNLSRN-DSESLPAS-ITQLSQLR-SLHLKDCSML 331 (635)
Q Consensus 258 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~---~L~Ls~n-~~~~lp~~-l~~l~~L~-~L~L~~n~~l 331 (635)
|..+++|+.|++++|.++.+|. +.. +++|+ .|++++| .++.+|.. +.++++|+ +|++++|++.
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp~-~~~----------l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFPD-LTK----------VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCCC-CTT----------CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred hCCCCCCCEEeCCCCCCccccc-ccc----------ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 8888888888888888888775 433 34454 8888888 78888764 77888888 8888887665
Q ss_pred CcCCCC---CCccceeccccccccccc-CccccCc-cccchhhhhhhhhcccccccCCccceEEEcCCccc
Q 006695 332 SSLPEL---PQSLELLDAENCKQLQFI-PEILSGL-EEVDASVLEKATFLNSAFTLNSACVKFVFSNCLKL 397 (635)
Q Consensus 332 ~~lp~l---~~sL~~L~l~~c~~l~~~-~~~~~~L-~~L~~l~L~~n~~~~~~~~l~~~~~~l~~~nC~~L 397 (635)
.+|.. .++|+.|++++|+.++.+ +..+..+ ++|+.+++++|++...........+.+.+.+++.|
T Consensus 170 -~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 170 -SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWTL 239 (239)
T ss_dssp -EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC---
T ss_pred -ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCccCC
Confidence 55542 257888888888644444 4567778 88888888888877654332233366677766543
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.80 E-value=3.8e-20 Score=192.53 Aligned_cols=193 Identities=16% Similarity=0.162 Sum_probs=102.1
Q ss_pred CceEEEcCCCCCccccccCCCC--CCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcc-cCccccCCCCCCEEee
Q 006695 78 NLVKLNLPYSKVVQIWEGKKRA--FKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTC-VPSSVQNFNHLSMLCF 154 (635)
Q Consensus 78 ~L~~L~L~~n~l~~l~~~~~~l--~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~-~~~~i~~l~~L~~L~L 154 (635)
.++.++++++.+. +..+..+ ++++.|++++|.+....+.+..+++|++|++++|..... ++..+..+++|++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 4667777777665 3344445 677778887777666666666777888888887765444 6666777778888888
Q ss_pred cCCCCCCccCCCC-CCCCCcEEecCCCCCCCc--cCc---ccCCcceEEeccc-cccc--cCcccccCC-CccEEEeecc
Q 006695 155 EGCKSLRSFPSNL-HFMSPIKIDFSSCFNLTE--FPQ---ISGNITDLILSET-AIQE--VPSSIECLT-NLEKLYINRC 224 (635)
Q Consensus 155 ~~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~--~p~---~~~~L~~L~L~~n-~i~~--lp~~~~~l~-~L~~L~L~~n 224 (635)
++|......+..+ .+++|+.|++++|..++. ++. ..++|++|++++| .++. ++..+..++ +|++|++++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 7775433333222 455555555555543332 221 1234444444444 4432 333344444 4444444444
Q ss_pred c--cc-ccchhcccCCCCCcEEecCCCC-CCCcchhhhcCCCCCCEEEecCC
Q 006695 225 M--RL-KRLSTSICKLKSLHVLVLDDCS-KLERFPEILEKMESVKCISLERT 272 (635)
Q Consensus 225 ~--~~-~~lp~~~~~l~~L~~L~Ls~n~-~~~~~~~~l~~l~~L~~L~L~~n 272 (635)
. +. +.++..+..+++|++|++++|. +.+..+..+..+++|+.|++++|
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 2 22 2233333444444444444444 22233334444444444444444
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=4.3e-19 Score=182.51 Aligned_cols=118 Identities=18% Similarity=0.302 Sum_probs=72.7
Q ss_pred EEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcc
Q 006695 196 LILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAIT 275 (635)
Q Consensus 196 L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~ 275 (635)
|++++|.++.++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+.. . +..+++|+.|++++|.++
T Consensus 112 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 112 LDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-P-LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCC
T ss_pred EECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh-h-hcCCCCCCEEECCCCccC
Confidence 3333334444432 5556666666666665544332 556666777777766555432 2 667777777777777777
Q ss_pred ccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCC
Q 006695 276 ELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSM 330 (635)
Q Consensus 276 ~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~ 330 (635)
.++. + ..+++|+.|+|++|+++.++. +..+++|+.|++++|++
T Consensus 187 ~~~~-l----------~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 187 DISP-L----------ASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp CCGG-G----------GGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEE
T ss_pred cChh-h----------cCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCee
Confidence 6653 2 345677777777777777763 67777777777777654
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=8.6e-19 Score=183.65 Aligned_cols=237 Identities=19% Similarity=0.186 Sum_probs=140.0
Q ss_pred eEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCc-cccCCCCCCEEeecCC
Q 006695 80 VKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPS-SVQNFNHLSMLCFEGC 157 (635)
Q Consensus 80 ~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~-~i~~l~~L~~L~L~~~ 157 (635)
++++.++++++++|.++ .+++++|+|++|++....+ .|.++++|++|+|++|...+.+|. .|.++++|+.+...++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 45677778888888766 3577888888887544333 377777777777777766665553 3556666555443333
Q ss_pred CCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccC-cccccCCCccEEEeecccccccchhcccC
Q 006695 158 KSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVP-SSIECLTNLEKLYINRCMRLKRLSTSICK 236 (635)
Q Consensus 158 ~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~L~~n~~~~~lp~~~~~ 236 (635)
|+++.++ ..+..+++|++|++++|.+....+..+..
T Consensus 90 -------------------------------------------N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~ 126 (350)
T 4ay9_X 90 -------------------------------------------NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 126 (350)
T ss_dssp -------------------------------------------TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCC
T ss_pred -------------------------------------------CcccccCchhhhhccccccccccccccccCCchhhcc
Confidence 3333332 23555556666666665555444444445
Q ss_pred CCCCcEEecCCCCCCCcch-hhhcCCC-CCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCC-CCCCccccc
Q 006695 237 LKSLHVLVLDDCSKLERFP-EILEKME-SVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSR-NDSESLPAS 313 (635)
Q Consensus 237 l~~L~~L~Ls~n~~~~~~~-~~l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~-n~~~~lp~~ 313 (635)
..++..|++.++.....++ ..|..+. .++.|++++|+|+++|... ....+|++|++++ |.++.+|..
T Consensus 127 ~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~----------f~~~~L~~l~l~~~n~l~~i~~~ 196 (350)
T 4ay9_X 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA----------FNGTQLDELNLSDNNNLEELPND 196 (350)
T ss_dssp BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS----------STTEEEEEEECTTCTTCCCCCTT
T ss_pred cchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh----------ccccchhHHhhccCCcccCCCHH
Confidence 5555566665544443333 2344443 4666777777777666543 2235667777764 556777653
Q ss_pred -ccCCCCccEEeccCCCCCCcCCC-CCCccceecccccccccccCccccCccccchhhhhhh
Q 006695 314 -ITQLSQLRSLHLKDCSMLSSLPE-LPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKA 373 (635)
Q Consensus 314 -l~~l~~L~~L~L~~n~~l~~lp~-l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n 373 (635)
++.+++|++|+|++|++ +.+|. .+.+|+.|.+.+|..++.+|. +..+++|+.+++..+
T Consensus 197 ~f~~l~~L~~LdLs~N~l-~~lp~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 197 VFHGASGPVILDISRTRI-HSLPSYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp TTTTEECCSEEECTTSCC-CCCCSSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred HhccCcccchhhcCCCCc-CccChhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 46777777777777643 34443 456777777777766766663 566666666665433
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=3.2e-19 Score=183.64 Aligned_cols=220 Identities=16% Similarity=0.120 Sum_probs=105.1
Q ss_pred CCceEEEcCCCCCcc--ccc--cCCCCCCCcEEEccCCCCCCCCCC-C--CCCCCCCEEeecCCCCCcccC----ccccC
Q 006695 77 ENLVKLNLPYSKVVQ--IWE--GKKRAFKLKYVDIHNSQYLIRMPD-L--SETPNLERTNLKNCINLTCVP----SSVQN 145 (635)
Q Consensus 77 ~~L~~L~L~~n~l~~--l~~--~~~~l~~L~~L~Ls~n~~~~~~p~-l--~~l~~L~~L~L~~n~~l~~~~----~~i~~ 145 (635)
..++.|.+.++.+.. +.. ....+++|++|++++|.+....|. + ..+++|++|+|++|...+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 346667777666542 111 112345577777777776666653 4 667777777777776554333 23345
Q ss_pred CCCCCEEeecCCCCCCccCCCC-CCCCCcEEecCCCCCCCccCcccCCcceEEeccccccc---cC--cccccCCCccEE
Q 006695 146 FNHLSMLCFEGCKSLRSFPSNL-HFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQE---VP--SSIECLTNLEKL 219 (635)
Q Consensus 146 l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~---lp--~~~~~l~~L~~L 219 (635)
+++|++|++++|......+..+ .+++ |++|+|++|.+.. ++ ..++.+++|++|
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~---------------------L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L 202 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPA---------------------LTSLDLSDNPGLGERGLMAALCPHKFPAIQNL 202 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTT---------------------CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSC
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCC---------------------CCEEECCCCCCccchhhhHHHhhhcCCCCCEE
Confidence 6666666666654322222211 2222 2333333333221 11 112344445555
Q ss_pred Eeeccccccc--chh-cccCCCCCcEEecCCCCCCCcchhhhcCC---CCCCEEEecCCCccccCchhcccccchhhccC
Q 006695 220 YINRCMRLKR--LST-SICKLKSLHVLVLDDCSKLERFPEILEKM---ESVKCISLERTAITELPSSFANLEGLKDLYIG 293 (635)
Q Consensus 220 ~L~~n~~~~~--lp~-~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l---~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~ 293 (635)
++++|.+... .+. .+..+++|++|+|++|.+.+..|..+..+ ++|++|++++|+|+.+|..+
T Consensus 203 ~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~------------ 270 (310)
T 4glp_A 203 ALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL------------ 270 (310)
T ss_dssp BCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC------------
T ss_pred ECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh------------
Confidence 5555444211 111 12344555555555555444444444333 35555555555555554422
Q ss_pred CCCccEEEcCCCCCCcccccccCCCCccEEeccCCCC
Q 006695 294 GSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSM 330 (635)
Q Consensus 294 ~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~ 330 (635)
.++|+.|+|++|+++.+|. +..+++|+.|+|++|++
T Consensus 271 ~~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 271 PAKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CSCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred cCCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCC
Confidence 1455555555555555443 44455555555555544
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=1.9e-18 Score=177.74 Aligned_cols=107 Identities=21% Similarity=0.283 Sum_probs=69.4
Q ss_pred CcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecC
Q 006695 192 NITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLER 271 (635)
Q Consensus 192 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~ 271 (635)
+|++|++++|.++.++. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++
T Consensus 130 ~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 130 NLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKN 204 (308)
T ss_dssp TCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTT
T ss_pred CCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccC
Confidence 34444444444555544 5666777777777776654333 6677777777777776655433 67777888888888
Q ss_pred CCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccc
Q 006695 272 TAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASI 314 (635)
Q Consensus 272 n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l 314 (635)
|.++.++. + ..+++|+.|++++|.++..|..+
T Consensus 205 N~l~~~~~-l----------~~l~~L~~L~l~~N~i~~~~~~~ 236 (308)
T 1h6u_A 205 NQISDVSP-L----------ANTSNLFIVTLTNQTITNQPVFY 236 (308)
T ss_dssp SCCCBCGG-G----------TTCTTCCEEEEEEEEEECCCEEC
T ss_pred CccCcccc-c----------cCCCCCCEEEccCCeeecCCeee
Confidence 87777653 2 44577888888888877766543
No 86
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=1.4e-20 Score=211.41 Aligned_cols=335 Identities=13% Similarity=0.039 Sum_probs=238.5
Q ss_pred eeecCCCcccccChh----hhcCCCCCcEEEeecCCCCCCcccceeee-cCCcccCCCccceEeecCCCCCCCCCC----
Q 006695 2 FLDLSKITSIHLSPQ----AFANMPNLRFLKFYMPEHNGVPIMISKVH-LDQGLEYLPNELRYLHWHEYPSKALPF---- 72 (635)
Q Consensus 2 ~LdLs~n~~~~l~~~----~f~~l~~L~~L~L~~n~l~~~~~~~~~~~-l~~~l~~l~~~L~~L~l~~~~l~~lp~---- 72 (635)
+|+++++.. +... ...++++|+.|+|++|.+++.. .. ++..+..++ +|++|+++++.+..+..
T Consensus 142 ~L~L~~~~~--~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-----~~~l~~~~~~~~-~L~~L~L~~n~~~~~~~~~l~ 213 (592)
T 3ogk_B 142 TLKLDKCSG--FTTDGLLSIVTHCRKIKTLLMEESSFSEKD-----GKWLHELAQHNT-SLEVLNFYMTEFAKISPKDLE 213 (592)
T ss_dssp EEEEESCEE--EEHHHHHHHHHHCTTCSEEECTTCEEECCC-----SHHHHHHHHHCC-CCCEEECTTCCCSSCCHHHHH
T ss_pred EEECcCCCC--cCHHHHHHHHhhCCCCCEEECccccccCcc-----hhHHHHHHhcCC-CccEEEeeccCCCccCHHHHH
Confidence 578887752 2222 2348999999999998765211 11 122223344 49999999998874432
Q ss_pred -CC-CCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCC----CCCCCCCCCCCEEeecCCCCCcccCccccCC
Q 006695 73 -DF-EPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIR----MPDLSETPNLERTNLKNCINLTCVPSSVQNF 146 (635)
Q Consensus 73 -~~-~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~----~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l 146 (635)
.+ .+++|++|++++|.+..++..+..+++|+.|++++...... ...+..+++|+.|+++++ ....+|..+..+
T Consensus 214 ~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~ 292 (592)
T 3ogk_B 214 TIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFA 292 (592)
T ss_dssp HHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGG
T ss_pred HHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhc
Confidence 22 57999999999999999998889999999999986433311 124788899999999986 556778888899
Q ss_pred CCCCEEeecCCCCCCccC-C-CCCCCCCcEEecCCCCCCCccC---cccCCcceEEecc-----------ccccc--cCc
Q 006695 147 NHLSMLCFEGCKSLRSFP-S-NLHFMSPIKIDFSSCFNLTEFP---QISGNITDLILSE-----------TAIQE--VPS 208 (635)
Q Consensus 147 ~~L~~L~L~~~~~l~~lp-~-~~~l~~L~~L~l~~c~~l~~~p---~~~~~L~~L~L~~-----------n~i~~--lp~ 208 (635)
++|++|++++|....... . ...+++|+.|+++++-.-..++ ...++|++|++++ +.++. ++.
T Consensus 293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~ 372 (592)
T 3ogk_B 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA 372 (592)
T ss_dssp GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence 999999999988322211 1 1278999999998432111222 2347899999993 56653 334
Q ss_pred ccccCCCccEEEeecccccccchhcccC-CCCCcEEecCC---CCCCCc------chhhhcCCCCCCEEEecCCC--ccc
Q 006695 209 SIECLTNLEKLYINRCMRLKRLSTSICK-LKSLHVLVLDD---CSKLER------FPEILEKMESVKCISLERTA--ITE 276 (635)
Q Consensus 209 ~~~~l~~L~~L~L~~n~~~~~lp~~~~~-l~~L~~L~Ls~---n~~~~~------~~~~l~~l~~L~~L~L~~n~--l~~ 276 (635)
....+++|++|+++.+.+.+..+..++. +++|+.|++++ |+..+. ++..+..+++|+.|++++|. ++.
T Consensus 373 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~ 452 (592)
T 3ogk_B 373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452 (592)
T ss_dssp HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence 4567899999999888887776666665 89999999973 333333 44557789999999997643 442
Q ss_pred cCchhcccccchhhccCCCCccEEEcCCCCCCc--ccccccCCCCccEEeccCCCCCCc-CCC---CCCccceecccccc
Q 006695 277 LPSSFANLEGLKDLYIGGSSLRQLNLSRNDSES--LPASITQLSQLRSLHLKDCSMLSS-LPE---LPQSLELLDAENCK 350 (635)
Q Consensus 277 lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~--lp~~l~~l~~L~~L~L~~n~~l~~-lp~---l~~sL~~L~l~~c~ 350 (635)
-. +......+++|+.|+|++|+++. ++..+..+++|++|+|++|++... ++. ..++|+.|++++|.
T Consensus 453 ~~--------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 453 LG--------LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HH--------HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HH--------HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 10 11122346899999999999864 566678899999999999996432 332 35899999999998
Q ss_pred ccc
Q 006695 351 QLQ 353 (635)
Q Consensus 351 ~l~ 353 (635)
...
T Consensus 525 it~ 527 (592)
T 3ogk_B 525 ASM 527 (592)
T ss_dssp CCT
T ss_pred CCH
Confidence 443
No 87
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=7.3e-21 Score=213.61 Aligned_cols=367 Identities=14% Similarity=0.110 Sum_probs=214.0
Q ss_pred ChhhhcCCCCCcEEEeecCCCCCCcccceeeec-CCc------------ccCCCccceEeecCCCCCCCCCC-CC--CCC
Q 006695 14 SPQAFANMPNLRFLKFYMPEHNGVPIMISKVHL-DQG------------LEYLPNELRYLHWHEYPSKALPF-DF--EPE 77 (635)
Q Consensus 14 ~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~~------------l~~l~~~L~~L~l~~~~l~~lp~-~~--~l~ 77 (635)
+...+.++++|+.|+++++... ....+ +.. ....+ +|++|+++++.+..... .+ .++
T Consensus 58 ~~~~~~~~~~L~~L~L~~~~~~------~~~~l~~~~~~~~~~~~l~~l~~~~~-~L~~L~L~~~~~~~~~~~~l~~~~~ 130 (594)
T 2p1m_B 58 PATVIRRFPKVRSVELKGKPHF------ADFNLVPDGWGGYVYPWIEAMSSSYT-WLEEIRLKRMVVTDDCLELIAKSFK 130 (594)
T ss_dssp HHHHHHHCTTCCEEEEECSCGG------GGGTCSCTTSCCBCHHHHHHHHHHCT-TCCEEEEESCBCCHHHHHHHHHHCT
T ss_pred HHHHHhhCCCceEEeccCCCch------hhcccccccccchhhHHHHHHHHhCC-CCCeEEeeCcEEcHHHHHHHHHhCC
Confidence 3456777888888888875321 00000 100 11233 47888887776532211 12 356
Q ss_pred CceEEEcCCC-CCcc--ccccCCCCCCCcEEEccCCCCCCCC----CC-CCCCCCCCEEeecCCC--CC-cccCccccCC
Q 006695 78 NLVKLNLPYS-KVVQ--IWEGKKRAFKLKYVDIHNSQYLIRM----PD-LSETPNLERTNLKNCI--NL-TCVPSSVQNF 146 (635)
Q Consensus 78 ~L~~L~L~~n-~l~~--l~~~~~~l~~L~~L~Ls~n~~~~~~----p~-l~~l~~L~~L~L~~n~--~l-~~~~~~i~~l 146 (635)
+|++|++++| .+.. ++.....+++|++|+|++|.+.... +. ...+++|++|++++|. .. ..++..+..+
T Consensus 131 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~ 210 (594)
T 2p1m_B 131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC 210 (594)
T ss_dssp TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHC
T ss_pred CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhC
Confidence 7888888777 4543 4444456778888888877643322 12 2356788888887774 11 1122223456
Q ss_pred CCCCEEeecCCCCCCccCCCC-CCCCCcEEecCCC-------------------CCCCc-----------cCc---ccCC
Q 006695 147 NHLSMLCFEGCKSLRSFPSNL-HFMSPIKIDFSSC-------------------FNLTE-----------FPQ---ISGN 192 (635)
Q Consensus 147 ~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c-------------------~~l~~-----------~p~---~~~~ 192 (635)
++|+.|++++|..++.++..+ .+++|+.|++++| ..++. ++. ..++
T Consensus 211 ~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~ 290 (594)
T 2p1m_B 211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR 290 (594)
T ss_dssp TTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTT
T ss_pred CCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCC
Confidence 778888887775444443333 5566666664433 22221 222 2367
Q ss_pred cceEEeccccccc--cCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCC--------CCC-Ccchhh-hcC
Q 006695 193 ITDLILSETAIQE--VPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDC--------SKL-ERFPEI-LEK 260 (635)
Q Consensus 193 L~~L~L~~n~i~~--lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n--------~~~-~~~~~~-l~~ 260 (635)
|++|++++|.++. ++..+..+++|++|++++|.....++.....+++|++|++++| ... ...... ...
T Consensus 291 L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~ 370 (594)
T 2p1m_B 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG 370 (594)
T ss_dssp CCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHH
T ss_pred CCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHh
Confidence 8888888887663 3333567888888888887222223333345788888888432 222 211222 234
Q ss_pred CCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcC--C----CCCCccc------ccccCCCCccEEeccCC
Q 006695 261 MESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLS--R----NDSESLP------ASITQLSQLRSLHLKDC 328 (635)
Q Consensus 261 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls--~----n~~~~lp------~~l~~l~~L~~L~L~~n 328 (635)
+++|+.|.+..|.++.... ..+...+++|+.|+++ + +.++..| ..+..+++|++|+|++
T Consensus 371 ~~~L~~L~~~~~~l~~~~~--------~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~- 441 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAAL--------ITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG- 441 (594)
T ss_dssp CTTCCEEEEEESCCCHHHH--------HHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-
T ss_pred chhHHHHHHhcCCcCHHHH--------HHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-
Confidence 7888888887777763211 1112246889999998 4 4466443 2256788999999976
Q ss_pred CCCCcCCC----CCCccceecccccccccccCccc-cCccccchhhhhhhhhcccccc----cCCccceEEEcCCcc
Q 006695 329 SMLSSLPE----LPQSLELLDAENCKQLQFIPEIL-SGLEEVDASVLEKATFLNSAFT----LNSACVKFVFSNCLK 396 (635)
Q Consensus 329 ~~l~~lp~----l~~sL~~L~l~~c~~l~~~~~~~-~~L~~L~~l~L~~n~~~~~~~~----l~~~~~~l~~~nC~~ 396 (635)
.+....+. ..++|+.|++++|.........+ ..+++|+.|+|++|++...... .....+.+++.+|..
T Consensus 442 ~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 442 LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 33322211 25789999999987543333233 5678899999999988443211 112348899999965
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.77 E-value=3.2e-20 Score=197.22 Aligned_cols=251 Identities=14% Similarity=0.124 Sum_probs=156.4
Q ss_pred ceEeecCCCCCCCCCCCC-CCCCceEEEcCCCCCcc-----ccccCCCCCCCcEEEccCCCCC---CCCC-C-------C
Q 006695 57 LRYLHWHEYPSKALPFDF-EPENLVKLNLPYSKVVQ-----IWEGKKRAFKLKYVDIHNSQYL---IRMP-D-------L 119 (635)
Q Consensus 57 L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~Ls~n~~~---~~~p-~-------l 119 (635)
|++..+....+..++..+ .+++|++|+|++|.+.. ++..+..+++|++|+|++|.+. ..+| . +
T Consensus 11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l 90 (386)
T 2ca6_A 11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL 90 (386)
T ss_dssp CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence 444444444444454444 46677888888877763 3345667777788877776422 2223 1 2
Q ss_pred CCCCCCCEEeecCCCCCc----ccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCccc-----
Q 006695 120 SETPNLERTNLKNCINLT----CVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQIS----- 190 (635)
Q Consensus 120 ~~l~~L~~L~L~~n~~l~----~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~----- 190 (635)
..+++|++|+|++|.... .++..+..+++|++|++++|......+. .++..+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~~l~~l~~ 151 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA-------------------KIARALQELAV 151 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH-------------------HHHHHHHHHHH
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH-------------------HHHHHHHHHhh
Confidence 566777777777775554 3555666677777777766543211000 011111
Q ss_pred -------CCcceEEecccccc--ccC---cccccCCCccEEEeecccccc-----cchhcccCCCCCcEEecCCCCCC--
Q 006695 191 -------GNITDLILSETAIQ--EVP---SSIECLTNLEKLYINRCMRLK-----RLSTSICKLKSLHVLVLDDCSKL-- 251 (635)
Q Consensus 191 -------~~L~~L~L~~n~i~--~lp---~~~~~l~~L~~L~L~~n~~~~-----~lp~~~~~l~~L~~L~Ls~n~~~-- 251 (635)
++|++|++++|.++ .+| ..+..+++|++|++++|.+.. ..+..+..+++|++|+|++|.+.
T Consensus 152 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~ 231 (386)
T 2ca6_A 152 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231 (386)
T ss_dssp HHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH
T ss_pred hhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH
Confidence 46677777777665 344 356677788888888887652 23446777888888888887764
Q ss_pred --CcchhhhcCCCCCCEEEecCCCcccc-----CchhcccccchhhccCCCCccEEEcCCCCCCc-----ccccc-cCCC
Q 006695 252 --ERFPEILEKMESVKCISLERTAITEL-----PSSFANLEGLKDLYIGGSSLRQLNLSRNDSES-----LPASI-TQLS 318 (635)
Q Consensus 252 --~~~~~~l~~l~~L~~L~L~~n~l~~l-----p~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~-----lp~~l-~~l~ 318 (635)
..+|..+..+++|+.|+|++|.++.. |..+.. ..+++|+.|+|++|.++. +|..+ .+++
T Consensus 232 g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~--------~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~ 303 (386)
T 2ca6_A 232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK--------LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 303 (386)
T ss_dssp HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT--------CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh--------ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCC
Confidence 55677777888888888888877643 222200 225778888888888776 77666 5578
Q ss_pred CccEEeccCCCCCCcC
Q 006695 319 QLRSLHLKDCSMLSSL 334 (635)
Q Consensus 319 ~L~~L~L~~n~~l~~l 334 (635)
+|++|++++|++.+..
T Consensus 304 ~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 304 DLLFLELNGNRFSEED 319 (386)
T ss_dssp TCCEEECTTSBSCTTS
T ss_pred CceEEEccCCcCCcch
Confidence 8888888887766544
No 89
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=4.2e-21 Score=215.54 Aligned_cols=342 Identities=14% Similarity=0.074 Sum_probs=227.7
Q ss_pred hhcCCCCCcEEEeecCCCCCCcccceeeecCCccc-CCCccceEeecCCC-CCCC--CCCCC-CCCCceEEEcCCCCCcc
Q 006695 17 AFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLE-YLPNELRYLHWHEY-PSKA--LPFDF-EPENLVKLNLPYSKVVQ 91 (635)
Q Consensus 17 ~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~-~l~~~L~~L~l~~~-~l~~--lp~~~-~l~~L~~L~L~~n~l~~ 91 (635)
.+..+++|+.|++++|.+++ ..+..+. .++ +|++|++.+| .+.. ++... .+++|++|++++|.++.
T Consensus 100 l~~~~~~L~~L~L~~~~~~~--------~~~~~l~~~~~-~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~ 170 (594)
T 2p1m_B 100 MSSSYTWLEEIRLKRMVVTD--------DCLELIAKSFK-NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDD 170 (594)
T ss_dssp HHHHCTTCCEEEEESCBCCH--------HHHHHHHHHCT-TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEEC
T ss_pred HHHhCCCCCeEEeeCcEEcH--------HHHHHHHHhCC-CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCC
Confidence 35678999999999987661 1112222 234 4999999888 3433 33333 57899999999998664
Q ss_pred -----ccccCCCCCCCcEEEccCCCCCCCCC-----C-CCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCC---
Q 006695 92 -----IWEGKKRAFKLKYVDIHNSQYLIRMP-----D-LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGC--- 157 (635)
Q Consensus 92 -----l~~~~~~l~~L~~L~Ls~n~~~~~~p-----~-l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~--- 157 (635)
++.....+++|+.|++++|. ..+. . +..+++|++|++++|...+.++..+..+++|+.|++..+
T Consensus 171 ~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~ 248 (594)
T 2p1m_B 171 VSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE 248 (594)
T ss_dssp CCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCC
T ss_pred cchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCc
Confidence 33334578899999999886 2222 1 245699999999998666667777888888888876544
Q ss_pred ----------------CCCCcc-----------CCCC-CCCCCcEEecCCCCCCCcc--C---cccCCcceEEecccccc
Q 006695 158 ----------------KSLRSF-----------PSNL-HFMSPIKIDFSSCFNLTEF--P---QISGNITDLILSETAIQ 204 (635)
Q Consensus 158 ----------------~~l~~l-----------p~~~-~l~~L~~L~l~~c~~l~~~--p---~~~~~L~~L~L~~n~i~ 204 (635)
..++.+ +... .+++|+.|++++|. ++.. . ...++|++|++++| +.
T Consensus 249 ~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~ 326 (594)
T 2p1m_B 249 VRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IE 326 (594)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GH
T ss_pred cchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cC
Confidence 222222 1111 46899999999987 5431 1 24578999999988 44
Q ss_pred --ccCcccccCCCccEEEeecc---------cccccchhcc-cCCCCCcEEecCCCCCCCcchhhhc-CCCCCCEEEec-
Q 006695 205 --EVPSSIECLTNLEKLYINRC---------MRLKRLSTSI-CKLKSLHVLVLDDCSKLERFPEILE-KMESVKCISLE- 270 (635)
Q Consensus 205 --~lp~~~~~l~~L~~L~L~~n---------~~~~~lp~~~-~~l~~L~~L~Ls~n~~~~~~~~~l~-~l~~L~~L~L~- 270 (635)
.++.....+++|++|++.+| .+.......+ .++++|+.|.++.+.+.......+. .+++|+.|+++
T Consensus 327 ~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~ 406 (594)
T 2p1m_B 327 DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCI 406 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeec
Confidence 23333456899999999542 3322222223 3488999998887777665555554 58999999999
Q ss_pred -C----CCccccCchhcccccchhhccCCCCccEEEcCCCCCCc-cccccc-CCCCccEEeccCCCCCCcCC----CCCC
Q 006695 271 -R----TAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSES-LPASIT-QLSQLRSLHLKDCSMLSSLP----ELPQ 339 (635)
Q Consensus 271 -~----n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~-lp~~l~-~l~~L~~L~L~~n~~l~~lp----~l~~ 339 (635)
+ +.++..|..- .+...+..+++|+.|+|++ .++. .+..+. .+++|++|+|++|.+....+ ...+
T Consensus 407 ~~~~~~~~l~~~~~~~----~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 481 (594)
T 2p1m_B 407 IEPKAPDYLTLEPLDI----GFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD 481 (594)
T ss_dssp SSTTCCCTTTCCCTHH----HHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCT
T ss_pred ccCCCcccccCCchhh----HHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCC
Confidence 4 5666554310 1223345668899999987 4432 223343 38889999999988654322 2357
Q ss_pred ccceecccccccccccC-ccccCccccchhhhhhhhhc
Q 006695 340 SLELLDAENCKQLQFIP-EILSGLEEVDASVLEKATFL 376 (635)
Q Consensus 340 sL~~L~l~~c~~l~~~~-~~~~~L~~L~~l~L~~n~~~ 376 (635)
+|+.|++++|+...... .....+++|+.|++++|++.
T Consensus 482 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 482 SLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp TCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred CcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 89999999998733222 23456788999999988873
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=8.9e-20 Score=189.71 Aligned_cols=196 Identities=18% Similarity=0.256 Sum_probs=120.6
Q ss_pred CCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCC-CC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEee
Q 006695 77 ENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIR-MP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCF 154 (635)
Q Consensus 77 ~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~-~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L 154 (635)
.+++.|++++|.+...+..+..+++|++|+|++|.+... ++ .+..+++|++|++++|......+..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 455555555555555444445555555555555553322 33 2445555555555555444445555555556666666
Q ss_pred cCCCCCCc--cCCCC-CCCCCcEEecCCCCCCCc--cC---cccC-CcceEEecccc--c--cccCcccccCCCccEEEe
Q 006695 155 EGCKSLRS--FPSNL-HFMSPIKIDFSSCFNLTE--FP---QISG-NITDLILSETA--I--QEVPSSIECLTNLEKLYI 221 (635)
Q Consensus 155 ~~~~~l~~--lp~~~-~l~~L~~L~l~~c~~l~~--~p---~~~~-~L~~L~L~~n~--i--~~lp~~~~~l~~L~~L~L 221 (635)
++|..++. ++..+ .+++|+.|++++|..++. ++ ...+ +|++|++++|. + ..+|..+..+++|++|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 55533331 22222 455566666666544442 22 2235 78888888884 3 457777889999999999
Q ss_pred eccc-ccccchhcccCCCCCcEEecCCCCC-CCcchhhhcCCCCCCEEEecCC
Q 006695 222 NRCM-RLKRLSTSICKLKSLHVLVLDDCSK-LERFPEILEKMESVKCISLERT 272 (635)
Q Consensus 222 ~~n~-~~~~lp~~~~~l~~L~~L~Ls~n~~-~~~~~~~l~~l~~L~~L~L~~n 272 (635)
++|. +....+..+..+++|++|++++|.. .......+..+++|+.|++++|
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 9999 5667777889999999999999962 2222235677888888888877
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.76 E-value=1.7e-18 Score=178.30 Aligned_cols=225 Identities=14% Similarity=0.123 Sum_probs=121.4
Q ss_pred CCcEEEccCCCCCCC----CCCCCCCCCCCEEeecCCCCCcccCccc--cCCCCCCEEeecCCCCCCccCCCCCCCCCcE
Q 006695 101 KLKYVDIHNSQYLIR----MPDLSETPNLERTNLKNCINLTCVPSSV--QNFNHLSMLCFEGCKSLRSFPSNLHFMSPIK 174 (635)
Q Consensus 101 ~L~~L~Ls~n~~~~~----~p~l~~l~~L~~L~L~~n~~l~~~~~~i--~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~ 174 (635)
.++.+.+.++.+... +..+..+++|++|++++|...+..|..+ ..+++|++|++++|......+... .
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~------~ 138 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA------E 138 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH------H
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH------H
Confidence 456666666543211 0112223557777777766666666665 666666666666655332211000 0
Q ss_pred EecCCCCCCCccCcccCCcceEEeccccccccC-cccccCCCccEEEeeccccccc--ch--hcccCCCCCcEEecCCCC
Q 006695 175 IDFSSCFNLTEFPQISGNITDLILSETAIQEVP-SSIECLTNLEKLYINRCMRLKR--LS--TSICKLKSLHVLVLDDCS 249 (635)
Q Consensus 175 L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~L~~n~~~~~--lp--~~~~~l~~L~~L~Ls~n~ 249 (635)
..+ ...++|++|++++|.++.++ ..++.+++|++|+|++|++.+. ++ ..+..+++|++|+|++|.
T Consensus 139 ---------~~~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 208 (310)
T 4glp_A 139 ---------LQQ-WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG 208 (310)
T ss_dssp ---------HHT-TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred ---------HHh-hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC
Confidence 000 12345666666666666655 3466677777777777765442 22 223456667777777665
Q ss_pred CCCcchh----hhcCCCCCCEEEecCCCcccc-CchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEe
Q 006695 250 KLERFPE----ILEKMESVKCISLERTAITEL-PSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLH 324 (635)
Q Consensus 250 ~~~~~~~----~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~ 324 (635)
+.. ++. .+..+++|++|++++|.++.+ |..+..+ ..+++|++|+|++|+++.+|..+. ++|++|+
T Consensus 209 l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~-------~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~ 278 (310)
T 4glp_A 209 MET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC-------MWSSALNSLNLSFAGLEQVPKGLP--AKLRVLD 278 (310)
T ss_dssp CCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC-------CCCTTCCCEECCSSCCCSCCSCCC--SCCSCEE
T ss_pred CCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc-------cCcCcCCEEECCCCCCCchhhhhc--CCCCEEE
Confidence 532 222 245566667777777666654 5444322 122566666666666666665553 5666666
Q ss_pred ccCCCCCC-cCCCCCCccceeccccccc
Q 006695 325 LKDCSMLS-SLPELPQSLELLDAENCKQ 351 (635)
Q Consensus 325 L~~n~~l~-~lp~l~~sL~~L~l~~c~~ 351 (635)
|++|++.+ ..+..+++|+.|++++|+.
T Consensus 279 Ls~N~l~~~~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 279 LSSNRLNRAPQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCSCCCCSCCCTTSCCCCSCEECSSTTT
T ss_pred CCCCcCCCCchhhhCCCccEEECcCCCC
Confidence 66665554 2333445566666666543
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.76 E-value=7.8e-20 Score=192.51 Aligned_cols=110 Identities=15% Similarity=0.094 Sum_probs=47.7
Q ss_pred CccEEEeecccccc----cchhcccCCC-CCcEEecCCCCCCCcchhh----hcCC-CCCCEEEecCCCccccCchhccc
Q 006695 215 NLEKLYINRCMRLK----RLSTSICKLK-SLHVLVLDDCSKLERFPEI----LEKM-ESVKCISLERTAITELPSSFANL 284 (635)
Q Consensus 215 ~L~~L~L~~n~~~~----~lp~~~~~l~-~L~~L~Ls~n~~~~~~~~~----l~~l-~~L~~L~L~~n~l~~lp~~~~~l 284 (635)
+|++|+|++|.+.. .++..+..++ +|++|+|++|.+.+..+.. +..+ ++|+.|+|++|.|+.....
T Consensus 139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~---- 214 (362)
T 3goz_A 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA---- 214 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH----
T ss_pred ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH----
Confidence 45555555554442 2223333333 5555555555544433322 2233 3555555555555541100
Q ss_pred ccchhhccC-CCCccEEEcCCCCCCcccc-----cccCCCCccEEeccCCC
Q 006695 285 EGLKDLYIG-GSSLRQLNLSRNDSESLPA-----SITQLSQLRSLHLKDCS 329 (635)
Q Consensus 285 ~~L~~l~~~-~~~L~~L~Ls~n~~~~lp~-----~l~~l~~L~~L~L~~n~ 329 (635)
.+...+.. .++|++|+|++|.++..+. .+..+++|++|+|++|.
T Consensus 215 -~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 215 -ELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp -HHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred -HHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 00111111 2355555555555544322 23445555555555554
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=1.3e-19 Score=192.59 Aligned_cols=240 Identities=15% Similarity=0.061 Sum_probs=175.3
Q ss_pred ecCCcccCCCccceEeecCCCCCCC-----CCCCC-CCCCceEEEcCCCCCccc----cccC-------CCCCCCcEEEc
Q 006695 45 HLDQGLEYLPNELRYLHWHEYPSKA-----LPFDF-EPENLVKLNLPYSKVVQI----WEGK-------KRAFKLKYVDI 107 (635)
Q Consensus 45 ~l~~~l~~l~~~L~~L~l~~~~l~~-----lp~~~-~l~~L~~L~L~~n~l~~l----~~~~-------~~l~~L~~L~L 107 (635)
.++..+...++ |++|++++|.+.. ++..+ .+++|++|+|++|.+..+ |.++ ..+++|++|+|
T Consensus 23 ~l~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLEDDS-VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHHCSC-CCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhcCCC-ccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 34556666655 9999999998865 33334 688999999999866533 4443 78999999999
Q ss_pred cCCCCCCC----CC-CCCCCCCCCEEeecCCCCCcccCc----cccCC---------CCCCEEeecCCCCC-CccCCCCC
Q 006695 108 HNSQYLIR----MP-DLSETPNLERTNLKNCINLTCVPS----SVQNF---------NHLSMLCFEGCKSL-RSFPSNLH 168 (635)
Q Consensus 108 s~n~~~~~----~p-~l~~l~~L~~L~L~~n~~l~~~~~----~i~~l---------~~L~~L~L~~~~~l-~~lp~~~~ 168 (635)
++|.+... +| .+..+++|++|+|++|......+. .+..+ ++|++|++++|+.. ..++...
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~- 180 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA- 180 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH-
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH-
Confidence 99997652 34 377899999999999976543333 33344 88888888887633 1221100
Q ss_pred CCCCcEEecCCCCCCCccCcccCCcceEEecccccc------ccCcccccCCCccEEEeeccccc----ccchhcccCCC
Q 006695 169 FMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQ------EVPSSIECLTNLEKLYINRCMRL----KRLSTSICKLK 238 (635)
Q Consensus 169 l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~------~lp~~~~~l~~L~~L~L~~n~~~----~~lp~~~~~l~ 238 (635)
..-...++|++|++++|.++ -+|..+..+++|++|+|++|.+. ..+|..+..++
T Consensus 181 ----------------~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 181 ----------------KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244 (386)
T ss_dssp ----------------HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred ----------------HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence 00012246777777777776 23447888999999999999985 67788889999
Q ss_pred CCcEEecCCCCCCCc----chhhhcC--CCCCCEEEecCCCccc-----cCchhcccccchhhccCCCCccEEEcCCCCC
Q 006695 239 SLHVLVLDDCSKLER----FPEILEK--MESVKCISLERTAITE-----LPSSFANLEGLKDLYIGGSSLRQLNLSRNDS 307 (635)
Q Consensus 239 ~L~~L~Ls~n~~~~~----~~~~l~~--l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~ 307 (635)
+|++|+|++|.+.+. ++..+.. +++|+.|+|++|.++. +|..+ ...+++|+.|+|++|.+
T Consensus 245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l---------~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI---------DEKMPDLLFLELNGNRF 315 (386)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH---------HHHCTTCCEEECTTSBS
T ss_pred CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH---------HhcCCCceEEEccCCcC
Confidence 999999999988765 5666744 9999999999999986 66543 13458999999999998
Q ss_pred Cccc
Q 006695 308 ESLP 311 (635)
Q Consensus 308 ~~lp 311 (635)
+...
T Consensus 316 ~~~~ 319 (386)
T 2ca6_A 316 SEED 319 (386)
T ss_dssp CTTS
T ss_pred Ccch
Confidence 7655
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=1.2e-17 Score=166.36 Aligned_cols=173 Identities=18% Similarity=0.219 Sum_probs=88.2
Q ss_pred cceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCC
Q 006695 193 ITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERT 272 (635)
Q Consensus 193 L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n 272 (635)
.++++++++.++.+|..+. ++|+.|+|++|.+.+..+..+.++++|++|+|++|.+.+..+..+..+++|+.|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 3445555555555554433 35555555555555544445555555555555555555544445555555555555555
Q ss_pred CccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc-ccCCCCccEEeccCCCCCCcCCC---CCCccceecccc
Q 006695 273 AITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSMLSSLPE---LPQSLELLDAEN 348 (635)
Q Consensus 273 ~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~l~~lp~---l~~sL~~L~l~~ 348 (635)
.++.+|.. .+..+++|++|+|++|+++.+|.. +..+++|++|+|++|.+.+..+. .+++|+.|++++
T Consensus 94 ~l~~~~~~---------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 94 QLASLPLG---------VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST 164 (251)
T ss_dssp CCCCCCTT---------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cccccChh---------HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC
Confidence 55554431 123345555555555555555443 34555555555555544332222 124555555555
Q ss_pred cccccccCccccCccccchhhhhhhhhc
Q 006695 349 CKQLQFIPEILSGLEEVDASVLEKATFL 376 (635)
Q Consensus 349 c~~l~~~~~~~~~L~~L~~l~L~~n~~~ 376 (635)
|......+..+..+++|+.+++++|++.
T Consensus 165 N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 165 NQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 5544444445555666666666666543
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.75 E-value=3.7e-17 Score=162.79 Aligned_cols=174 Identities=16% Similarity=0.197 Sum_probs=85.0
Q ss_pred ceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccc-cCCCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCC
Q 006695 57 LRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWE-GKKRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCI 134 (635)
Q Consensus 57 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~ 134 (635)
.+.++++++.+..+|..+. ++|+.|+|++|++..++. .+..+++|++|+|++|.+....+. +..+++|++|+|++|.
T Consensus 16 ~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 4455555555555555432 355555555555554432 344555555555555544333332 4444444444444443
Q ss_pred CCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcc-cccC
Q 006695 135 NLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSS-IECL 213 (635)
Q Consensus 135 ~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~-~~~l 213 (635)
.....+..+..+++|+ +|+|++|.|+.+|.. +..+
T Consensus 95 l~~~~~~~~~~l~~L~--------------------------------------------~L~L~~N~l~~~~~~~~~~l 130 (251)
T 3m19_A 95 LASLPLGVFDHLTQLD--------------------------------------------KLYLGGNQLKSLPSGVFDRL 130 (251)
T ss_dssp CCCCCTTTTTTCTTCC--------------------------------------------EEECCSSCCCCCCTTTTTTC
T ss_pred ccccChhHhcccCCCC--------------------------------------------EEEcCCCcCCCcChhHhccC
Confidence 3322222233333333 333333344444333 3455
Q ss_pred CCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcc
Q 006695 214 TNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAIT 275 (635)
Q Consensus 214 ~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~ 275 (635)
++|++|+|++|.+.+..+..+..+++|++|+|++|.+.+..+..+..+++|+.|++++|.++
T Consensus 131 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 55555555555555444444555555555555555555544445555555555555555554
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.74 E-value=3.7e-19 Score=187.37 Aligned_cols=181 Identities=14% Similarity=0.100 Sum_probs=130.1
Q ss_pred CcceEEeccccccccCc-----ccccC-CCccEEEeecccccccchhc----ccC-CCCCcEEecCCCCCCCc----chh
Q 006695 192 NITDLILSETAIQEVPS-----SIECL-TNLEKLYINRCMRLKRLSTS----ICK-LKSLHVLVLDDCSKLER----FPE 256 (635)
Q Consensus 192 ~L~~L~L~~n~i~~lp~-----~~~~l-~~L~~L~L~~n~~~~~lp~~----~~~-l~~L~~L~Ls~n~~~~~----~~~ 256 (635)
+|++|+|++|.++..+. .+..+ ++|++|++++|.+.+..+.. +.. .++|++|+|++|.+... ++.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 45555555555554432 24445 78999999999887665544 344 36999999999988753 445
Q ss_pred hhcCCC-CCCEEEecCCCccccCchhcccccchhhccCC-CCccEEEcCCCCCCc-----ccccccC-CCCccEEeccCC
Q 006695 257 ILEKME-SVKCISLERTAITELPSSFANLEGLKDLYIGG-SSLRQLNLSRNDSES-----LPASITQ-LSQLRSLHLKDC 328 (635)
Q Consensus 257 ~l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~-~~L~~L~Ls~n~~~~-----lp~~l~~-l~~L~~L~L~~n 328 (635)
.+..++ +|++|++++|.++..... .+...+..+ ++|++|+|++|.++. ++..+.. .++|++|+|++|
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~-----~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCA-----ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHH-----HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred HHhcCCccccEeeecCCCCchhhHH-----HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 566666 999999999999865431 112233445 599999999999887 7766766 459999999999
Q ss_pred CCCCcCC-------CCCCccceeccccccc-------ccccCccccCccccchhhhhhhhhcc
Q 006695 329 SMLSSLP-------ELPQSLELLDAENCKQ-------LQFIPEILSGLEEVDASVLEKATFLN 377 (635)
Q Consensus 329 ~~l~~lp-------~l~~sL~~L~l~~c~~-------l~~~~~~~~~L~~L~~l~L~~n~~~~ 377 (635)
++....+ ...++|+.|++++|.. +..++..+..+++|+.+++++|++..
T Consensus 236 ~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 8766433 2457899999999972 33455577888899999999887643
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=3.2e-17 Score=181.43 Aligned_cols=193 Identities=19% Similarity=0.228 Sum_probs=113.7
Q ss_pred hhcCCC-----CCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCcc
Q 006695 17 AFANMP-----NLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQ 91 (635)
Q Consensus 17 ~f~~l~-----~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~ 91 (635)
+|.+++ +|+.|++++|.+++ +|..+. .+|++|++++|.++.+| -.+++|++|++++|+++.
T Consensus 49 ~~~~l~~C~~~~L~~L~Ls~n~L~~---------lp~~l~---~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ 114 (571)
T 3cvr_A 49 AVSLLKECLINQFSELQLNRLNLSS---------LPDNLP---PQITVLEITQNALISLP--ELPASLEYLDACDNRLST 114 (571)
T ss_dssp HHHHHHHHHHTTCSEEECCSSCCSC---------CCSCCC---TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC
T ss_pred hhhhccccccCCccEEEeCCCCCCc---------cCHhHc---CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC
Confidence 455554 77777777776663 333331 34777777777777777 235677777777777777
Q ss_pred ccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCC
Q 006695 92 IWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMS 171 (635)
Q Consensus 92 l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~ 171 (635)
+|. +.. +|++|+|++|.+.. +|. .+++|+.|+|++|... .+|. .+++|+.|++++|+ ++.+|. +.
T Consensus 115 ip~-l~~--~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~--- 179 (571)
T 3cvr_A 115 LPE-LPA--SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQ-LTFLPE-LP--- 179 (571)
T ss_dssp CCC-CCT--TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC-CSCCCC-CC---
T ss_pred cch-hhc--CCCEEECCCCcCCC-CCC--cCccccEEeCCCCccC-cCCC---cCCCcCEEECCCCC-CCCcch-hh---
Confidence 666 443 67777777776544 555 5667777777776443 3554 45666666666654 233444 22
Q ss_pred CcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCc-------cEEEeecccccccchhcccCCCCCcEEe
Q 006695 172 PIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNL-------EKLYINRCMRLKRLSTSICKLKSLHVLV 244 (635)
Q Consensus 172 L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L-------~~L~L~~n~~~~~lp~~~~~l~~L~~L~ 244 (635)
.+|+.|+|++|.|+.+|. +.. +| +.|+|++|.+. .+|..+..+++|+.|+
T Consensus 180 -------------------~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~ 236 (571)
T 3cvr_A 180 -------------------ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTII 236 (571)
T ss_dssp -------------------TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEE
T ss_pred -------------------CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEE
Confidence 455555555555555555 333 44 66666666554 3555555566666666
Q ss_pred cCCCCCCCcchhhhcCC
Q 006695 245 LDDCSKLERFPEILEKM 261 (635)
Q Consensus 245 Ls~n~~~~~~~~~l~~l 261 (635)
|++|.+.+..|..+..+
T Consensus 237 L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 237 LEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCSSSCCHHHHHHHHHH
T ss_pred eeCCcCCCcCHHHHHHh
Confidence 66666666666555443
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=1.2e-16 Score=176.78 Aligned_cols=187 Identities=16% Similarity=0.255 Sum_probs=118.8
Q ss_pred ceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCC
Q 006695 57 LRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINL 136 (635)
Q Consensus 57 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l 136 (635)
++.|++++|.+..+|..+ +++|++|+|++|+|+.+| ..+++|++|+|++|.+.. +|.+.. +|+.|+|++|..
T Consensus 61 L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~l~~--~L~~L~Ls~N~l- 132 (571)
T 3cvr_A 61 FSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPELPA--SLKHLDVDNNQL- 132 (571)
T ss_dssp CSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCCCCT--TCCEEECCSSCC-
T ss_pred ccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cchhhc--CCCEEECCCCcC-
Confidence 555555555555555433 244555555555555544 234455555555554333 333222 444444444432
Q ss_pred cccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCc
Q 006695 137 TCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNL 216 (635)
Q Consensus 137 ~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L 216 (635)
+.+|. .+++|+.|++++| .++.+|..+++|++|+|++|.|+.+|. +. ++|
T Consensus 133 ------------------------~~lp~--~l~~L~~L~Ls~N-~l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L 182 (571)
T 3cvr_A 133 ------------------------TMLPE--LPALLEYINADNN-QLTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESL 182 (571)
T ss_dssp ------------------------SCCCC--CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTC
T ss_pred ------------------------CCCCC--cCccccEEeCCCC-ccCcCCCcCCCcCEEECCCCCCCCcch-hh--CCC
Confidence 22444 3455555555553 344455556789999999999999998 66 999
Q ss_pred cEEEeecccccccchhcccCCCCC-------cEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcc-ccCchhccccc
Q 006695 217 EKLYINRCMRLKRLSTSICKLKSL-------HVLVLDDCSKLERFPEILEKMESVKCISLERTAIT-ELPSSFANLEG 286 (635)
Q Consensus 217 ~~L~L~~n~~~~~lp~~~~~l~~L-------~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~ 286 (635)
+.|+|++|.+. .+|. +.. +| +.|+|++|.+. .+|..+..+++|+.|+|++|.++ .+|..+..+..
T Consensus 183 ~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 183 EALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 99999999877 6666 554 77 99999998876 57888888999999999999998 56776666543
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=1.3e-16 Score=154.02 Aligned_cols=168 Identities=21% Similarity=0.288 Sum_probs=137.3
Q ss_pred CCccCc-ccCCcceEEeccccccccCcc-cccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcC
Q 006695 183 LTEFPQ-ISGNITDLILSETAIQEVPSS-IECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEK 260 (635)
Q Consensus 183 l~~~p~-~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~ 260 (635)
++.+|. ...++++|++++|.++.++.. ++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..
T Consensus 19 l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 98 (208)
T 2o6s_A 19 RTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK 98 (208)
T ss_dssp CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC
Confidence 344443 346789999999999988765 788999999999999888766667888999999999999888777777889
Q ss_pred CCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc-ccCCCCccEEeccCCCCCCcCCCCCC
Q 006695 261 MESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSMLSSLPELPQ 339 (635)
Q Consensus 261 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~l~~lp~l~~ 339 (635)
+++|++|++++|.++.+|.. .+..+++|+.|++++|+++.+|.. +..+++|++|++++|+..... +
T Consensus 99 l~~L~~L~L~~N~l~~~~~~---------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~----~ 165 (208)
T 2o6s_A 99 LTQLKELALNTNQLQSLPDG---------VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC----P 165 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTT---------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT----T
T ss_pred ccCCCEEEcCCCcCcccCHh---------HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC----C
Confidence 99999999999999988763 235568999999999999888865 688999999999999776544 5
Q ss_pred ccceecccccccccccCccccCcc
Q 006695 340 SLELLDAENCKQLQFIPEILSGLE 363 (635)
Q Consensus 340 sL~~L~l~~c~~l~~~~~~~~~L~ 363 (635)
+|+.|+++.|...+.+|..+..++
T Consensus 166 ~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 166 GIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred CHHHHHHHHHhCCceeeccCcccc
Confidence 788899999888888887776644
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=7e-17 Score=164.53 Aligned_cols=107 Identities=23% Similarity=0.334 Sum_probs=64.3
Q ss_pred cccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchh
Q 006695 210 IECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKD 289 (635)
Q Consensus 210 ~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~ 289 (635)
+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.++.++. +
T Consensus 108 l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l-------- 174 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-L-------- 174 (291)
T ss_dssp GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-G--------
T ss_pred hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-h--------
Confidence 33444444444444444332 2344555566666665555443 456666777777777777766543 2
Q ss_pred hccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCC
Q 006695 290 LYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLS 332 (635)
Q Consensus 290 l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~ 332 (635)
..+++|+.|++++|.++.+|. +..+++|+.|++++|++..
T Consensus 175 --~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 175 --AGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp --TTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred --cCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccC
Confidence 345677777777777777763 7777778888887765543
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=2.6e-16 Score=175.95 Aligned_cols=87 Identities=24% Similarity=0.368 Sum_probs=41.5
Q ss_pred cccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchh
Q 006695 210 IECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKD 289 (635)
Q Consensus 210 ~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~ 289 (635)
+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.|+.+|.
T Consensus 127 l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~~---------- 192 (605)
T 1m9s_A 127 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA---------- 192 (605)
T ss_dssp GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG----------
T ss_pred ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCChH----------
Confidence 44444555555555444332 334445555555555554444333 4555555555555555554421
Q ss_pred hccCCCCccEEEcCCCCCCccc
Q 006695 290 LYIGGSSLRQLNLSRNDSESLP 311 (635)
Q Consensus 290 l~~~~~~L~~L~Ls~n~~~~lp 311 (635)
+..+++|+.|+|++|.+...|
T Consensus 193 -l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 193 -LAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp -GTTCTTCSEEECCSEEEECCC
T ss_pred -HccCCCCCEEEccCCcCcCCc
Confidence 123345555555555544433
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=9.1e-16 Score=156.26 Aligned_cols=187 Identities=17% Similarity=0.209 Sum_probs=107.8
Q ss_pred ecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccC
Q 006695 61 HWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVP 140 (635)
Q Consensus 61 ~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~ 140 (635)
.+....+..+...-.+++|+.|++++|.++.++ ++..+++|++|+|++|++... +.+..+++|+.|++++|... .++
T Consensus 30 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~l~~n~l~-~~~ 106 (291)
T 1h6t_A 30 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVK-DLS 106 (291)
T ss_dssp HTTCSCTTSEECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCC-CGG
T ss_pred HhcCCCcccccchhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCC-cccccCCCCCEEECCCCcCC-CCh
Confidence 344444433322224567777888887777774 467778888888888775543 33777888888888877543 333
Q ss_pred ccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEE
Q 006695 141 SSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLY 220 (635)
Q Consensus 141 ~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~ 220 (635)
.+..+++|+.|++++|.. +.+ ..+..+++|+.|+
T Consensus 107 -~l~~l~~L~~L~L~~n~i--------------------------------------------~~~-~~l~~l~~L~~L~ 140 (291)
T 1h6t_A 107 -SLKDLKKLKSLSLEHNGI--------------------------------------------SDI-NGLVHLPQLESLY 140 (291)
T ss_dssp -GGTTCTTCCEEECTTSCC--------------------------------------------CCC-GGGGGCTTCCEEE
T ss_pred -hhccCCCCCEEECCCCcC--------------------------------------------CCC-hhhcCCCCCCEEE
Confidence 366677777777766531 111 1233344444444
Q ss_pred eecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEE
Q 006695 221 INRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQL 300 (635)
Q Consensus 221 L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L 300 (635)
+++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++.+|. + ..+++|+.|
T Consensus 141 l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l----------~~l~~L~~L 205 (291)
T 1h6t_A 141 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-L----------AGLKNLDVL 205 (291)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-G----------TTCTTCSEE
T ss_pred ccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-h----------ccCCCCCEE
Confidence 444444332 234455555555555555444333 5566666666666666665542 2 344666777
Q ss_pred EcCCCCCCccc
Q 006695 301 NLSRNDSESLP 311 (635)
Q Consensus 301 ~Ls~n~~~~lp 311 (635)
++++|++...|
T Consensus 206 ~l~~n~i~~~~ 216 (291)
T 1h6t_A 206 ELFSQECLNKP 216 (291)
T ss_dssp EEEEEEEECCC
T ss_pred ECcCCcccCCc
Confidence 77777665554
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=2.2e-15 Score=168.42 Aligned_cols=83 Identities=17% Similarity=0.253 Sum_probs=60.1
Q ss_pred CcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecC
Q 006695 192 NITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLER 271 (635)
Q Consensus 192 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~ 271 (635)
+|+.|+|++|.++.+ ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+.+. ..+..+++|+.|+|++
T Consensus 132 ~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 132 QLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFS 206 (605)
T ss_dssp TCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCS
T ss_pred ccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccC
Confidence 344444555555555 456777888888888887776655 77888888888888877653 3578888888999988
Q ss_pred CCccccCc
Q 006695 272 TAITELPS 279 (635)
Q Consensus 272 n~l~~lp~ 279 (635)
|.+...|.
T Consensus 207 N~l~~~p~ 214 (605)
T 1m9s_A 207 QECLNKPI 214 (605)
T ss_dssp EEEECCCC
T ss_pred CcCcCCcc
Confidence 88887654
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.63 E-value=2.8e-15 Score=147.00 Aligned_cols=147 Identities=21% Similarity=0.176 Sum_probs=95.5
Q ss_pred cceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCC
Q 006695 193 ITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERT 272 (635)
Q Consensus 193 L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n 272 (635)
.+.++.+++.++.+|..+. ++|++|+|++|.+.+..|..|..+++|++|+|++|.+....+..|..+++|+.|+|++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4456666677777776543 67777777777777666666777777777777777765555556677777777777777
Q ss_pred CccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCC---CCCccceeccccc
Q 006695 273 AITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE---LPQSLELLDAENC 349 (635)
Q Consensus 273 ~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~---l~~sL~~L~l~~c 349 (635)
.|+.+|... +..+++|+.|+|++|+++.+|..+..+++|++|+|++|++.+..+. .+++|+.|++++|
T Consensus 99 ~l~~l~~~~---------~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 99 QLTVLPSAV---------FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CCCCCCTTT---------TTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred cCCccChhH---------hCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 777665431 2345677777777777777777777777777777777655432222 1245555555555
Q ss_pred c
Q 006695 350 K 350 (635)
Q Consensus 350 ~ 350 (635)
+
T Consensus 170 ~ 170 (229)
T 3e6j_A 170 P 170 (229)
T ss_dssp C
T ss_pred C
Confidence 4
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=1.8e-15 Score=144.64 Aligned_cols=109 Identities=20% Similarity=0.246 Sum_probs=60.3
Q ss_pred cccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCC-ccccCchhcccccch
Q 006695 210 IECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTA-ITELPSSFANLEGLK 288 (635)
Q Consensus 210 ~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~ 288 (635)
+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. ++.+| .+
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l------- 155 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PL------- 155 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GG-------
T ss_pred hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hh-------
Confidence 3444555555555555544444555555555555555555555555555556666666666665 55544 22
Q ss_pred hhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCC
Q 006695 289 DLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSM 330 (635)
Q Consensus 289 ~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~ 330 (635)
..+++|+.|++++|.++.++ .+..+++|++|++++|++
T Consensus 156 ---~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 156 ---KTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ---GGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred ---cCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 33456666666666666655 556666666666666654
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=3.7e-15 Score=145.18 Aligned_cols=128 Identities=21% Similarity=0.282 Sum_probs=73.7
Q ss_pred ceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCC
Q 006695 194 TDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTA 273 (635)
Q Consensus 194 ~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~ 273 (635)
+.+++++++++++|..+. ++|+.|++++|.+.+..+..|..+++|+.|+|++|.+.+..|..|..+++|+.|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 345555556666655443 456666666666555555556666666666666666555555666666666666666666
Q ss_pred ccccCchhcccccchhhccCCCCccEEEcCCCCCCccc-ccccCCCCccEEeccCCCCCC
Q 006695 274 ITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLP-ASITQLSQLRSLHLKDCSMLS 332 (635)
Q Consensus 274 l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp-~~l~~l~~L~~L~L~~n~~l~ 332 (635)
|+.+|..+ +..+++|+.|+|++|.++.++ ..+..+++|++|+|++|++.+
T Consensus 92 l~~l~~~~---------f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 92 ITELPKSL---------FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142 (220)
T ss_dssp CCCCCTTT---------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCccCHhH---------ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE
Confidence 66655421 234456666666666665553 345566666666666655443
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.62 E-value=5.6e-15 Score=143.91 Aligned_cols=141 Identities=19% Similarity=0.250 Sum_probs=100.8
Q ss_pred CCccCcc-cCCcceEEeccccccccCc--ccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhc
Q 006695 183 LTEFPQI-SGNITDLILSETAIQEVPS--SIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILE 259 (635)
Q Consensus 183 l~~~p~~-~~~L~~L~L~~n~i~~lp~--~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~ 259 (635)
++.+|.. ...+++|+|++|.|+.++. .+..+++|++|+|++|.+.+..+..|.++++|++|+|++|.+.+..+..|.
T Consensus 23 l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 102 (220)
T 2v70_A 23 LNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFK 102 (220)
T ss_dssp CSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGT
T ss_pred cccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhc
Confidence 3444432 3456778888888887743 377788888888888887776666778888888888888877777777777
Q ss_pred CCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcc-cccccCCCCccEEeccCCCCCC
Q 006695 260 KMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESL-PASITQLSQLRSLHLKDCSMLS 332 (635)
Q Consensus 260 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~l-p~~l~~l~~L~~L~L~~n~~l~ 332 (635)
.+++|++|+|++|.|+.++.. .+..+++|+.|+|++|+++.+ |..+..+++|++|+|++|++..
T Consensus 103 ~l~~L~~L~Ls~N~l~~~~~~---------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 103 GLESLKTLMLRSNRITCVGND---------SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TCSSCCEEECTTSCCCCBCTT---------SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCcCCCEEECCCCcCCeECHh---------HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 888888888888888776421 124457778888888887777 5567777777777777776543
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.62 E-value=6.2e-15 Score=144.58 Aligned_cols=151 Identities=23% Similarity=0.255 Sum_probs=127.4
Q ss_pred cEEecCCCCCCCccCc-ccCCcceEEecccccccc-CcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCC
Q 006695 173 IKIDFSSCFNLTEFPQ-ISGNITDLILSETAIQEV-PSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSK 250 (635)
Q Consensus 173 ~~L~l~~c~~l~~~p~-~~~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~ 250 (635)
+.++.++ ..++.+|. ..++|++|+|++|.|+.+ |..+..+++|++|+|++|.+....+..|..+++|++|+|++|.+
T Consensus 22 ~~v~c~~-~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 22 TTVDCRS-KRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp TEEECTT-SCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEeEccC-CCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 3444444 34555554 347899999999999988 56689999999999999998766667789999999999999998
Q ss_pred CCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc-cccCCCCccEEeccCCC
Q 006695 251 LERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA-SITQLSQLRSLHLKDCS 329 (635)
Q Consensus 251 ~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~-~l~~l~~L~~L~L~~n~ 329 (635)
.+..+..|..+++|+.|++++|.|+.+|..+ ..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|+
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~----------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGI----------ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCSCCTTG----------GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CccChhHhCcchhhCeEeccCCcccccCccc----------ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 8877788899999999999999999998766 445899999999999999985 47899999999999998
Q ss_pred CCCcC
Q 006695 330 MLSSL 334 (635)
Q Consensus 330 ~l~~l 334 (635)
+....
T Consensus 171 ~~c~c 175 (229)
T 3e6j_A 171 WDCEC 175 (229)
T ss_dssp BCTTB
T ss_pred ccCCc
Confidence 76543
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=5.6e-15 Score=143.93 Aligned_cols=148 Identities=20% Similarity=0.302 Sum_probs=124.6
Q ss_pred EEecCCCCCCCccCc-ccCCcceEEeccccccccCc-ccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCC
Q 006695 174 KIDFSSCFNLTEFPQ-ISGNITDLILSETAIQEVPS-SIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKL 251 (635)
Q Consensus 174 ~L~l~~c~~l~~~p~-~~~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~ 251 (635)
.+++++ ..++.+|. .+.+++.|++++|.|+.++. .+..+++|+.|+|++|.+.+..|..|.++++|++|+|++|.+.
T Consensus 15 ~v~c~~-~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 15 IVDCRG-KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp EEECTT-SCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred EEEcCC-CCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 344444 34555554 34689999999999999986 6899999999999999999888999999999999999999988
Q ss_pred CcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc-ccCCCCccEEeccCCCC
Q 006695 252 ERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSM 330 (635)
Q Consensus 252 ~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~ 330 (635)
...+..|..+++|+.|+|++|.|+.++.. .+..+++|+.|+|++|.++.++.. +..+++|++|+|++|++
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~---------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVD---------AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTT---------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHH---------HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 77777789999999999999999988542 235678999999999999999864 78899999999999875
Q ss_pred C
Q 006695 331 L 331 (635)
Q Consensus 331 l 331 (635)
.
T Consensus 165 ~ 165 (220)
T 2v9t_B 165 I 165 (220)
T ss_dssp E
T ss_pred C
Confidence 3
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.62 E-value=1.3e-15 Score=160.05 Aligned_cols=149 Identities=19% Similarity=0.202 Sum_probs=99.8
Q ss_pred cEEecCCCCCCCccCcc-cCCcceEEeccccccccCcc-cc-cCCCccEEEeecccccccchhcccCCCCCcEEecCCCC
Q 006695 173 IKIDFSSCFNLTEFPQI-SGNITDLILSETAIQEVPSS-IE-CLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCS 249 (635)
Q Consensus 173 ~~L~l~~c~~l~~~p~~-~~~L~~L~L~~n~i~~lp~~-~~-~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~ 249 (635)
+.+++++ ..++.+|.. +..++.|+|++|.|+.++.. +. .+++|+.|+|++|.+.+..+..|.++++|++|+|++|.
T Consensus 21 ~~l~c~~-~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSK-QQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCS-SCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCC-CCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 4566665 356666643 35677777777777777654 44 77777777777777776666677777777777777777
Q ss_pred CCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccc----cCCCCccEEec
Q 006695 250 KLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASI----TQLSQLRSLHL 325 (635)
Q Consensus 250 ~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l----~~l~~L~~L~L 325 (635)
+.+..+..|..+++|+.|+|++|.|+.++.. .+..+++|+.|+|++|.++.+|..+ ..+++|+.|+|
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~---------~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRN---------AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTT---------TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHH---------HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence 6666666677777777777777777766321 2344567777777777777777654 45677777777
Q ss_pred cCCCCC
Q 006695 326 KDCSML 331 (635)
Q Consensus 326 ~~n~~l 331 (635)
++|++.
T Consensus 171 ~~N~l~ 176 (361)
T 2xot_A 171 SSNKLK 176 (361)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 765543
No 111
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=1.1e-14 Score=140.46 Aligned_cols=168 Identities=18% Similarity=0.143 Sum_probs=141.6
Q ss_pred ceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCC
Q 006695 194 TDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTA 273 (635)
Q Consensus 194 ~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~ 273 (635)
+.++.+++.++++|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 57888899999999765 4699999999999987777778999999999999999887777778999999999999999
Q ss_pred ccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc-ccCCCCccEEeccCCCCCCcCCC---CCCccceeccccc
Q 006695 274 ITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSMLSSLPE---LPQSLELLDAENC 349 (635)
Q Consensus 274 l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~l~~lp~---l~~sL~~L~l~~c 349 (635)
++.+|... +..+++|++|++++|.++.+|.. +..+++|++|++++|++.+..+. .+++|+.|++++|
T Consensus 88 l~~~~~~~---------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 88 LQSLPNGV---------FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCCCCTTT---------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCccCHhH---------hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 99887632 35678999999999999999875 68999999999999887655443 2579999999999
Q ss_pred ccccccCccccCccccchhhhhhhhhcccc
Q 006695 350 KQLQFIPEILSGLEEVDASVLEKATFLNSA 379 (635)
Q Consensus 350 ~~l~~~~~~~~~L~~L~~l~L~~n~~~~~~ 379 (635)
+.. ..++.|+.+++..|.+....
T Consensus 159 ~~~-------~~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 159 PWD-------CTCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp CBC-------CCTTTTHHHHHHHHHCTTTB
T ss_pred Cee-------cCCCCHHHHHHHHHhCCcee
Confidence 654 34567888999999887553
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.60 E-value=2.1e-15 Score=144.19 Aligned_cols=149 Identities=17% Similarity=0.151 Sum_probs=75.5
Q ss_pred CCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeec
Q 006695 76 PENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFE 155 (635)
Q Consensus 76 l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~ 155 (635)
+++|+.|++++|.++.++ ++..+++|++|++++|. ...++.+..+++|++|++++|......+..++.+++|+.|+++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 445666666666666555 45566666666666663 3334455566666666666665555455556666666666666
Q ss_pred CCCCCCccCCCC-CCCCCcEEecCCCCCCCccCcccCCcceEEecccc-ccccCcccccCCCccEEEeecccccccchhc
Q 006695 156 GCKSLRSFPSNL-HFMSPIKIDFSSCFNLTEFPQISGNITDLILSETA-IQEVPSSIECLTNLEKLYINRCMRLKRLSTS 233 (635)
Q Consensus 156 ~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~-i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~ 233 (635)
+|......+..+ .+++| ++|++++|. ++.+| .+..+++|+.|++++|.+.+ ++ .
T Consensus 121 ~n~i~~~~~~~l~~l~~L---------------------~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~ 176 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKV---------------------NSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-G 176 (197)
T ss_dssp SSBCBGGGHHHHTTCSSC---------------------CEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-T
T ss_pred CCccCcHhHHHHhhCCCC---------------------CEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-H
Confidence 554333222211 22333 333333333 33333 34455555555555555433 22 3
Q ss_pred ccCCCCCcEEecCCCCC
Q 006695 234 ICKLKSLHVLVLDDCSK 250 (635)
Q Consensus 234 ~~~l~~L~~L~Ls~n~~ 250 (635)
+..+++|+.|++++|.+
T Consensus 177 l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 177 IEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp GGGCSSCCEEEECBC--
T ss_pred hccCCCCCEEEeeCccc
Confidence 44555555555555543
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.60 E-value=4.2e-15 Score=156.19 Aligned_cols=172 Identities=19% Similarity=0.177 Sum_probs=112.8
Q ss_pred ceEEeccccccccCcccccCCCccEEEeecccccccchhccc-CCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCC
Q 006695 194 TDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSIC-KLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERT 272 (635)
Q Consensus 194 ~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~-~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n 272 (635)
+.+++++++++.+|..+. +.++.|+|++|.+.+..+..+. ++++|+.|+|++|.+.+..+..|..+++|+.|+|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 467777777777776543 3567777777777666666665 7777777777777776666667777777777777777
Q ss_pred CccccCchhcccccchhhccCCCCccEEEcCCCCCCccc-ccccCCCCccEEeccCCCCCCcCCC-C------CCcccee
Q 006695 273 AITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLP-ASITQLSQLRSLHLKDCSMLSSLPE-L------PQSLELL 344 (635)
Q Consensus 273 ~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp-~~l~~l~~L~~L~L~~n~~l~~lp~-l------~~sL~~L 344 (635)
.|+.++.. .+..+++|+.|+|++|++..++ ..+..+++|++|+|++|.+.. +|. . +++|+.|
T Consensus 99 ~l~~~~~~---------~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 99 HLHTLDEF---------LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp CCCEECTT---------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEE
T ss_pred cCCcCCHH---------HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEE
Confidence 77766542 2344577777777777777663 456777777777777765544 332 1 4677777
Q ss_pred cccccccccccCccccCccc--cchhhhhhhhhcc
Q 006695 345 DAENCKQLQFIPEILSGLEE--VDASVLEKATFLN 377 (635)
Q Consensus 345 ~l~~c~~l~~~~~~~~~L~~--L~~l~L~~n~~~~ 377 (635)
++++|......+..+..++. ++.++|++|++.+
T Consensus 169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp ECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 77777654433345555555 3566777776643
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.59 E-value=9.9e-15 Score=142.16 Aligned_cols=66 Identities=18% Similarity=0.187 Sum_probs=35.7
Q ss_pred cccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcc
Q 006695 210 IECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAIT 275 (635)
Q Consensus 210 ~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~ 275 (635)
+..+++|++|+|++|.+.+..|..|..+++|++|+|++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 101 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 444555555555555555444555555555555555555555555555555555555555555544
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=2.5e-15 Score=150.61 Aligned_cols=169 Identities=20% Similarity=0.216 Sum_probs=87.0
Q ss_pred CCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecC
Q 006695 77 ENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEG 156 (635)
Q Consensus 77 ~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~ 156 (635)
.+++.++++++.++.++ .+..+++|+.|++++|.+ ..++.+..+++|+.|+|++|... .++. +..+++|+.|++++
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNI-QSLAGMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCC-CCCTTGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCc-ccchHHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEECCC
Confidence 34555556666666554 455566666666666653 33455566666666666666333 2333 66666666666666
Q ss_pred CCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccC
Q 006695 157 CKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICK 236 (635)
Q Consensus 157 ~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~ 236 (635)
|+ ++.+|.. +. .+|++|++++|.++.++ .+..+++|+.|++++|.+.+. + .+..
T Consensus 95 N~-l~~l~~~--------------------~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~ 148 (263)
T 1xeu_A 95 NR-LKNLNGI--------------------PS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-MLGF 148 (263)
T ss_dssp SC-CSCCTTC--------------------CC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-GGGG
T ss_pred Cc-cCCcCcc--------------------cc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-HHcc
Confidence 53 2222210 01 34555555556555553 355556666666666554432 2 3444
Q ss_pred CCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcccc
Q 006695 237 LKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITEL 277 (635)
Q Consensus 237 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~l 277 (635)
+++|+.|++++|.+.+. ..+..+++|+.|++++|.++..
T Consensus 149 l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 149 LSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 55555555555444433 3344444444444444444433
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=1.5e-17 Score=184.73 Aligned_cols=199 Identities=16% Similarity=0.126 Sum_probs=126.2
Q ss_pred CCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCc-------------cCCCC-CCCCCcEEe-cCCCCCC
Q 006695 119 LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRS-------------FPSNL-HFMSPIKID-FSSCFNL 183 (635)
Q Consensus 119 l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~-------------lp~~~-~l~~L~~L~-l~~c~~l 183 (635)
+...++|+.|+|++| .++.+|..++.+++|+.|++++|..+.. .|..+ .+++|+.|+ ++. +
T Consensus 345 ~~~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~-n-- 420 (567)
T 1dce_A 345 SATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA-A-- 420 (567)
T ss_dssp CSTTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH-H--
T ss_pred cccCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh-c--
Confidence 456677777888776 4457777888888888877755431111 11111 222222222 111 0
Q ss_pred CccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCC
Q 006695 184 TEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMES 263 (635)
Q Consensus 184 ~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~ 263 (635)
.+.+|+.+.+++|.++.+|. ..|+.|+|++|.+.+ +|. ++.+++|+.|+|++|.+. .+|..++.+++
T Consensus 421 -----~~~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 487 (567)
T 1dce_A 421 -----YLDDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRC 487 (567)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred -----ccchhhhhhhhcccccccCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCC
Confidence 01123334444444444432 247778888877655 554 777888888888887766 66777888888
Q ss_pred CCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcc--cccccCCCCccEEeccCCCCCCcCCCC----
Q 006695 264 VKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESL--PASITQLSQLRSLHLKDCSMLSSLPEL---- 337 (635)
Q Consensus 264 L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~l--p~~l~~l~~L~~L~L~~n~~l~~lp~l---- 337 (635)
|+.|+|++|.|+.+| .+ ..+++|+.|+|++|+++.+ |..+..+++|+.|+|++|++.+..|..
T Consensus 488 L~~L~Ls~N~l~~lp-~l----------~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~ 556 (567)
T 1dce_A 488 LEVLQASDNALENVD-GV----------ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 556 (567)
T ss_dssp CCEEECCSSCCCCCG-GG----------TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHH
T ss_pred CCEEECCCCCCCCCc-cc----------CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHH
Confidence 888888888888776 44 4457788888888888777 777888888888888887766554432
Q ss_pred --CCccceec
Q 006695 338 --PQSLELLD 345 (635)
Q Consensus 338 --~~sL~~L~ 345 (635)
+++|+.|+
T Consensus 557 ~~lp~L~~L~ 566 (567)
T 1dce_A 557 EMLPSVSSIL 566 (567)
T ss_dssp HHCTTCSEEE
T ss_pred HHCcccCccC
Confidence 46777765
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=1.2e-14 Score=135.19 Aligned_cols=131 Identities=18% Similarity=0.213 Sum_probs=110.3
Q ss_pred cCCcceEEecccccc--ccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEE
Q 006695 190 SGNITDLILSETAIQ--EVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCI 267 (635)
Q Consensus 190 ~~~L~~L~L~~n~i~--~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L 267 (635)
+++|++|++++|.++ .+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 467899999999998 8888889999999999999987665 678889999999999999888788888889999999
Q ss_pred EecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc----cccCCCCccEEeccCCCC
Q 006695 268 SLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA----SITQLSQLRSLHLKDCSM 330 (635)
Q Consensus 268 ~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~----~l~~l~~L~~L~L~~n~~ 330 (635)
++++|.++.+|.. ..+..+++|+.|++++|.+..+|. .+..+++|++|++++|..
T Consensus 101 ~Ls~N~l~~~~~~--------~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 101 NLSGNKLKDISTL--------EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ECBSSSCCSSGGG--------GGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred eccCCccCcchhH--------HHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 9999999887621 123556889999999999888886 678889999999988764
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.56 E-value=5.2e-15 Score=148.32 Aligned_cols=167 Identities=19% Similarity=0.232 Sum_probs=109.3
Q ss_pred CCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEec
Q 006695 191 GNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLE 270 (635)
Q Consensus 191 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~ 270 (635)
.++..++++++.+++++ .+..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|+.|+++
T Consensus 19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 34556666677777666 56667777777777776543 34 56667777777777776555433 6777777777777
Q ss_pred CCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCC--CCCccceecccc
Q 006695 271 RTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE--LPQSLELLDAEN 348 (635)
Q Consensus 271 ~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~--l~~sL~~L~l~~ 348 (635)
+|+++.+|.. .. ++|+.|++++|+++.++ .+..+++|+.|++++|++.+ ++. .+++|+.|++++
T Consensus 94 ~N~l~~l~~~-----------~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~-~~~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 94 RNRLKNLNGI-----------PS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKS-IVMLGFLSKLEVLDLHG 159 (263)
T ss_dssp SSCCSCCTTC-----------CC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCB-CGGGGGCTTCCEEECTT
T ss_pred CCccCCcCcc-----------cc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCC-ChHHccCCCCCEEECCC
Confidence 7777766541 11 67777777777777765 46777777777777765543 343 246777777777
Q ss_pred cccccccCccccCccccchhhhhhhhhccc
Q 006695 349 CKQLQFIPEILSGLEEVDASVLEKATFLNS 378 (635)
Q Consensus 349 c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~ 378 (635)
|..... ..+..+++|+.+++++|++...
T Consensus 160 N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 160 NEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 765443 5566777777777777776554
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=2.4e-14 Score=130.22 Aligned_cols=126 Identities=20% Similarity=0.225 Sum_probs=104.0
Q ss_pred cCCcceEEecccccc--ccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEE
Q 006695 190 SGNITDLILSETAIQ--EVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCI 267 (635)
Q Consensus 190 ~~~L~~L~L~~n~i~--~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L 267 (635)
+++++.|++++|.++ .+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|+.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467888999999888 7888888899999999999887665 678889999999999988888788888888999999
Q ss_pred EecCCCccccC--chhcccccchhhccCCCCccEEEcCCCCCCcccc----cccCCCCccEEeccC
Q 006695 268 SLERTAITELP--SSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA----SITQLSQLRSLHLKD 327 (635)
Q Consensus 268 ~L~~n~l~~lp--~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~----~l~~l~~L~~L~L~~ 327 (635)
++++|.++.+| ..+ ..+++|++|++++|.++.+|. .+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~----------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPL----------KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGG----------GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHH----------hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999888765 333 456788899999988888775 578888888888763
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=1.2e-17 Score=185.63 Aligned_cols=214 Identities=14% Similarity=0.119 Sum_probs=151.1
Q ss_pred CCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEe-
Q 006695 75 EPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLC- 153 (635)
Q Consensus 75 ~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~- 153 (635)
..++|+.|+|++|+++.+|..++.+++|+.|++++|..+...|. .+..+...+..|..++.+++|+.|+
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~----------ll~~~~~~~~~~~~l~~l~~L~~L~~ 416 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL----------LMRALDPLLYEKETLQYFSTLKAVDP 416 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH----------HHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHH----------HHHhcccccCCHHHHHHHHhcccCcc
Confidence 45677888888888888888888888888888766542111110 0111224455666777777777777
Q ss_pred ecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhc
Q 006695 154 FEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTS 233 (635)
Q Consensus 154 L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~ 233 (635)
++.+. + ..|..+.++++ .++.++. ..|+.|+|++|.|+++|. ++.+++|+.|+|++|.+. .+|..
T Consensus 417 l~~n~-~---------~~L~~l~l~~n-~i~~l~~--~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~ 481 (567)
T 1dce_A 417 MRAAY-L---------DDLRSKFLLEN-SVLKMEY--ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPA 481 (567)
T ss_dssp GGHHH-H---------HHHHHHHHHHH-HHHHHHH--TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGG
T ss_pred hhhcc-c---------chhhhhhhhcc-cccccCc--cCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchh
Confidence 44321 1 11222222221 1222211 358888999999999987 899999999999998877 77888
Q ss_pred ccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcccc--CchhcccccchhhccCCCCccEEEcCCCCCCccc
Q 006695 234 ICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITEL--PSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLP 311 (635)
Q Consensus 234 ~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~l--p~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp 311 (635)
++.+++|+.|+|++|.+.+ +| .++.+++|+.|+|++|.|+.+ |..+ ..+++|+.|+|++|.++.+|
T Consensus 482 ~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l----------~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 482 LAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPL----------VSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp GGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGG----------GGCTTCCEEECTTSGGGGSS
T ss_pred hhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHH----------hcCCCCCEEEecCCcCCCCc
Confidence 9999999999999988776 66 788999999999999999987 6655 44588999999999988887
Q ss_pred ccc----cCCCCccEEec
Q 006695 312 ASI----TQLSQLRSLHL 325 (635)
Q Consensus 312 ~~l----~~l~~L~~L~L 325 (635)
+.+ ..+++|+.|++
T Consensus 550 ~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 550 GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCTTHHHHHCTTCSEEEC
T ss_pred cHHHHHHHHCcccCccCC
Confidence 643 34889998864
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.51 E-value=1.4e-14 Score=165.92 Aligned_cols=144 Identities=23% Similarity=0.197 Sum_probs=86.4
Q ss_pred CCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEec
Q 006695 191 GNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLE 270 (635)
Q Consensus 191 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~ 270 (635)
.+|+.|+|++|.+..+|..+..+++|++|+|++|.+. .+|..|+++++|++|+|++|.+. .+|..++.+++|+.|+|+
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECC
T ss_pred CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECC
Confidence 4566677777777777766667777777777777665 66666777777777777776655 556667777777777777
Q ss_pred CCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcc-cccccCCC-CccEEeccCCCCCCcCCCCCCccceecccc
Q 006695 271 RTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESL-PASITQLS-QLRSLHLKDCSMLSSLPELPQSLELLDAEN 348 (635)
Q Consensus 271 ~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~l-p~~l~~l~-~L~~L~L~~n~~l~~lp~l~~sL~~L~l~~ 348 (635)
+|.|+.+|..+ ..+++|+.|+|++|.+... |..+..+. .+..|+|++|.+.+.+| ..|+.|+++.
T Consensus 302 ~N~l~~lp~~~----------~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p---~~l~~l~l~~ 368 (727)
T 4b8c_D 302 DNMVTTLPWEF----------GNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP---HERRFIEINT 368 (727)
T ss_dssp SSCCCCCCSST----------TSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC---CC--------
T ss_pred CCCCCccChhh----------hcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc---cccceeEeec
Confidence 77777766654 3346677777777776543 33333321 12235666666655544 4566677766
Q ss_pred c
Q 006695 349 C 349 (635)
Q Consensus 349 c 349 (635)
|
T Consensus 369 n 369 (727)
T 4b8c_D 369 D 369 (727)
T ss_dssp -
T ss_pred c
Confidence 6
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.51 E-value=5.9e-14 Score=133.60 Aligned_cols=131 Identities=22% Similarity=0.291 Sum_probs=102.1
Q ss_pred ceEEeccccccccCcccccCCCccEEEeecccccccchh-cccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCC
Q 006695 194 TDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLST-SICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERT 272 (635)
Q Consensus 194 ~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~-~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n 272 (635)
+.+++++++++++|..+.. +|++|++++|.+.+..+. .+..+++|++|+|++|.+.+..|..|..+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 5778888888888876543 788888888877665554 4778888888888888888877888888888888888888
Q ss_pred CccccCchhcccccchhhccCCCCccEEEcCCCCCCcc-cccccCCCCccEEeccCCCCCCcCC
Q 006695 273 AITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESL-PASITQLSQLRSLHLKDCSMLSSLP 335 (635)
Q Consensus 273 ~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~l-p~~l~~l~~L~~L~L~~n~~l~~lp 335 (635)
+|+.++.. .+..+++|++|+|++|+++.+ |..+..+++|++|+|++|++....+
T Consensus 89 ~l~~~~~~---------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 89 KIKEISNK---------MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCEECSS---------SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCCccCHH---------HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 88877653 234568888888888888766 5568888999999999988776544
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.46 E-value=4.1e-13 Score=127.86 Aligned_cols=125 Identities=20% Similarity=0.296 Sum_probs=85.3
Q ss_pred ceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCC
Q 006695 194 TDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTA 273 (635)
Q Consensus 194 ~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~ 273 (635)
+.++++++.++++|..+. ++|++|++++|.+. .+|..+.++++|+.|+|++|.+.+..+..|..+++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 456667777777776543 46777777776654 455667777777777777777766666667777777777777777
Q ss_pred ccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc-ccCCCCccEEeccCCCC
Q 006695 274 ITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSM 330 (635)
Q Consensus 274 l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~ 330 (635)
|+.++.. .+..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|+.
T Consensus 90 l~~i~~~---------~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPR---------TFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTT---------TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHH---------HhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 7766542 234456777777777777777654 56777777777777654
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=1.7e-14 Score=165.15 Aligned_cols=59 Identities=20% Similarity=0.277 Sum_probs=29.4
Q ss_pred ccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhh
Q 006695 199 SETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEIL 258 (635)
Q Consensus 199 ~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l 258 (635)
++|.|+.+|..++.+++|++|+|++|.+. .+|..|+.+++|+.|+|++|.+.+.+|..+
T Consensus 278 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 278 SHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp TTSCCSSCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred cCCcCCccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 33334444444555555555555555442 444445555555555555555555544444
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.45 E-value=5.1e-13 Score=125.18 Aligned_cols=132 Identities=19% Similarity=0.272 Sum_probs=104.6
Q ss_pred cceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCC
Q 006695 193 ITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERT 272 (635)
Q Consensus 193 L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n 272 (635)
.+.+++++++++.+|..+. ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4678888888888886543 68899999998887666667788899999999988887766677888899999999999
Q ss_pred CccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc-ccCCCCccEEeccCCCCCCcCC
Q 006695 273 AITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSMLSSLP 335 (635)
Q Consensus 273 ~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~l~~lp 335 (635)
.++.+|... +..+++|+.|++++|.++.+|.. +..+++|++|++++|++....|
T Consensus 87 ~l~~~~~~~---------~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGV---------FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTT---------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHH---------hhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 988877532 34568889999999998888876 4778888888888887665443
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=1.7e-13 Score=128.36 Aligned_cols=125 Identities=16% Similarity=0.146 Sum_probs=61.4
Q ss_pred CcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecC
Q 006695 192 NITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLER 271 (635)
Q Consensus 192 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~ 271 (635)
+|++|++++|.++.+|......++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 20 ~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 97 (176)
T 1a9n_A 20 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97 (176)
T ss_dssp SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred CceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence 45555555555555543222222566666666555443 3455555555555555554433333345555555555555
Q ss_pred CCccccCc--hhcccccchhhccCCCCccEEEcCCCCCCccccc----ccCCCCccEEeccCC
Q 006695 272 TAITELPS--SFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS----ITQLSQLRSLHLKDC 328 (635)
Q Consensus 272 n~l~~lp~--~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~----l~~l~~L~~L~L~~n 328 (635)
|.|+.+|. .+ ..+++|+.|++++|.+..+|.. +..+++|+.|++++|
T Consensus 98 N~i~~~~~~~~l----------~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 98 NSLVELGDLDPL----------ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCCCCGGGGGGG----------GGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CcCCcchhhHhh----------hcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 55554443 11 2334555555555555544442 444444444444443
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.43 E-value=6.5e-13 Score=137.53 Aligned_cols=253 Identities=11% Similarity=0.020 Sum_probs=146.3
Q ss_pred cceEeecCCCCCC--CCCCCCCCCCceEEEcCCCCCccccc-cCCC--------CCCCcEEEccCCCCCCCCC--CCCCC
Q 006695 56 ELRYLHWHEYPSK--ALPFDFEPENLVKLNLPYSKVVQIWE-GKKR--------AFKLKYVDIHNSQYLIRMP--DLSET 122 (635)
Q Consensus 56 ~L~~L~l~~~~l~--~lp~~~~l~~L~~L~L~~n~l~~l~~-~~~~--------l~~L~~L~Ls~n~~~~~~p--~l~~l 122 (635)
+|+.|++++|.+. ..+... .+.+..+.+..+ .+|+ .+.+ +++|+.|+|.+ . ++.++ .|.++
T Consensus 50 ~L~~LdLs~n~i~~~~~~~~~-~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~ 123 (329)
T 3sb4_A 50 SLKVLDISNAEIKMYSGKAGT-YPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGC 123 (329)
T ss_dssp TCCEEEEEEEEECCEEESSSS-SGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTC
T ss_pred cCeEEecCcceeEEecCcccc-cccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-c-ccchhHHHhhcC
Confidence 4777777777766 222211 111344444444 2332 2445 78888888877 3 33444 37788
Q ss_pred CCCCEEeecCCCCCcccCccccCCCCCCEEeecCCC---CCCccCCCC--CCCCCc-EEecCCCCCCCcc----CcccCC
Q 006695 123 PNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCK---SLRSFPSNL--HFMSPI-KIDFSSCFNLTEF----PQISGN 192 (635)
Q Consensus 123 ~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~---~l~~lp~~~--~l~~L~-~L~l~~c~~l~~~----p~~~~~ 192 (635)
++|+.|++.+|.....-+.+|..+.++..+.+.... ....+.... .+..|+ .+.+.....+... .....+
T Consensus 124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~ 203 (329)
T 3sb4_A 124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRD 203 (329)
T ss_dssp TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGG
T ss_pred cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccc
Confidence 888888888776555555566666555555543311 111111111 333444 3333332221110 011234
Q ss_pred cceEEeccccccccCccc-ccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCC-EEEec
Q 006695 193 ITDLILSETAIQEVPSSI-ECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVK-CISLE 270 (635)
Q Consensus 193 L~~L~L~~n~i~~lp~~~-~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~-~L~L~ 270 (635)
++.+.+.++-...-...+ ..+++|+.|+|++|.+....+..|.++++|+.|++.+| +...-+.+|.++++|+ .+.+.
T Consensus 204 ~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~ 282 (329)
T 3sb4_A 204 INFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELP 282 (329)
T ss_dssp CSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEEC
T ss_pred cceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEc
Confidence 555555544211111111 23778888888887777666677888888888888875 5445556788888888 88887
Q ss_pred CCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc-cccCCCCccEEec
Q 006695 271 RTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA-SITQLSQLRSLHL 325 (635)
Q Consensus 271 ~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~-~l~~l~~L~~L~L 325 (635)
+ .++.++. ..+.++++|+.|++++|.+..|+. .+.++++|+.|+.
T Consensus 283 ~-~l~~I~~---------~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 283 A-SVTAIEF---------GAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp T-TCCEECT---------TTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred c-cceEEch---------hhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 7 6777654 235666888888888888888876 4678888887753
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.43 E-value=4.1e-13 Score=124.58 Aligned_cols=79 Identities=16% Similarity=0.215 Sum_probs=46.1
Q ss_pred CCceEEEcCCCCCc--cccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEee
Q 006695 77 ENLVKLNLPYSKVV--QIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCF 154 (635)
Q Consensus 77 ~~L~~L~L~~n~l~--~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L 154 (635)
++|++|++++|.++ .+|..+..+++|++|++++|.+... +.+..+++|++|++++|.....+|..+..+++|+.|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 46667777777766 6666666667777777777664433 55666666666666666444434444444444444444
Q ss_pred cC
Q 006695 155 EG 156 (635)
Q Consensus 155 ~~ 156 (635)
++
T Consensus 103 s~ 104 (168)
T 2ell_A 103 SG 104 (168)
T ss_dssp BS
T ss_pred cC
Confidence 44
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.42 E-value=3.1e-13 Score=139.97 Aligned_cols=260 Identities=15% Similarity=0.110 Sum_probs=175.3
Q ss_pred hhcC-CCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-C--------CCCceEEEcC
Q 006695 17 AFAN-MPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-E--------PENLVKLNLP 85 (635)
Q Consensus 17 ~f~~-l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~--------l~~L~~L~L~ 85 (635)
.+.. +++|+.|+|++|++... ....+ .++. ++.+....+ .+|.. | + +.+|+.|+|+
T Consensus 43 ~l~~~l~~L~~LdLs~n~i~~~-------~~~~~--~~~~-~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~ 109 (329)
T 3sb4_A 43 HLRDEFPSLKVLDISNAEIKMY-------SGKAG--TYPN-GKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILS 109 (329)
T ss_dssp HHHHSCTTCCEEEEEEEEECCE-------EESSS--SSGG-GCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBC
T ss_pred HHHHhhccCeEEecCcceeEEe-------cCccc--cccc-ccccccccc---ccCHHHhcccccccccccCCCcEEECC
Confidence 3444 78899999999877611 11111 2222 344444444 56665 5 6 8999999999
Q ss_pred CCCCcccccc-CCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCC----CCcccCccccCCCCCC-EEeecCCC
Q 006695 86 YSKVVQIWEG-KKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCI----NLTCVPSSVQNFNHLS-MLCFEGCK 158 (635)
Q Consensus 86 ~n~l~~l~~~-~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~----~l~~~~~~i~~l~~L~-~L~L~~~~ 158 (635)
+ .++.+++. +.++++|+.|++++|.+....+ .|.++.++..+.+.... ....-...+..+..|+ .+.+....
T Consensus 110 ~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~ 188 (329)
T 3sb4_A 110 E-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG 188 (329)
T ss_dssp T-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC
T ss_pred c-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC
Confidence 9 89988754 7899999999999998654444 37777777777665421 1111123355556666 45554322
Q ss_pred CCCcc--CCCCCCCCCcEEecCCCCCCCc---cCcccCCcceEEeccccccccCcc-cccCCCccEEEeecccccccchh
Q 006695 159 SLRSF--PSNLHFMSPIKIDFSSCFNLTE---FPQISGNITDLILSETAIQEVPSS-IECLTNLEKLYINRCMRLKRLST 232 (635)
Q Consensus 159 ~l~~l--p~~~~l~~L~~L~l~~c~~l~~---~p~~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~ 232 (635)
.+... ...+...++..+.+.+.-.... +.....+|+.|+|++|.++.+|.. |.++++|+.|+|.+| +...-+.
T Consensus 189 ~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~ 267 (329)
T 3sb4_A 189 KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQR 267 (329)
T ss_dssp CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHH
Confidence 22110 0112445566666655311111 112247899999999999999876 999999999999997 5556667
Q ss_pred cccCCCCCc-EEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEE
Q 006695 233 SICKLKSLH-VLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLN 301 (635)
Q Consensus 233 ~~~~l~~L~-~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~ 301 (635)
.|.++++|+ .+++.+ .+...-+.+|.++++|+.|++++|.++.++.. .+.++++|+.++
T Consensus 268 aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~---------aF~~~~~L~~ly 327 (329)
T 3sb4_A 268 VFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDE---------LFGNGVPSKLIY 327 (329)
T ss_dssp TTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTT---------TTCTTCCCCEEE
T ss_pred HhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchh---------hhcCCcchhhhc
Confidence 899999999 999998 66666678999999999999999999999863 345567777775
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.42 E-value=1.4e-12 Score=124.12 Aligned_cols=125 Identities=19% Similarity=0.258 Sum_probs=107.0
Q ss_pred EEecCCCCCCCccCc-ccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCC
Q 006695 174 KIDFSSCFNLTEFPQ-ISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLE 252 (635)
Q Consensus 174 ~L~l~~c~~l~~~p~-~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~ 252 (635)
.+++++ ..++.+|. .+.++++|++++|.|+.+|..+..+++|+.|+|++|.+.+..+..|.++++|++|+|++|.+.+
T Consensus 14 ~l~~~~-~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 14 VVRCSN-KGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp EEECTT-SCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred EEEcCC-CCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 344444 23445553 3468999999999999999999999999999999999998888899999999999999999998
Q ss_pred cchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCC
Q 006695 253 RFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSE 308 (635)
Q Consensus 253 ~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~ 308 (635)
..+..|..+++|+.|+|++|.|+.+|.. .+..+++|+.|+|++|.+.
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~---------~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGNDISVVPEG---------AFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTT---------TTTTCTTCCEEECCSSCEE
T ss_pred eCHHHhCCCCCCCEEECCCCCCCeeChh---------hhhcCccccEEEeCCCCee
Confidence 8888999999999999999999998863 2355689999999999864
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.40 E-value=5.9e-13 Score=120.91 Aligned_cols=125 Identities=21% Similarity=0.269 Sum_probs=102.0
Q ss_pred cCCCccEEEeeccccc-ccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccc-cCchhcccccchh
Q 006695 212 CLTNLEKLYINRCMRL-KRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITE-LPSSFANLEGLKD 289 (635)
Q Consensus 212 ~l~~L~~L~L~~n~~~-~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~ 289 (635)
..++|+.|++++|.+. +.+|..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.++. +|..+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~-------- 84 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA-------- 84 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH--------
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh--------
Confidence 4578999999999987 68888889999999999999987765 778899999999999999997 55543
Q ss_pred hccCCCCccEEEcCCCCCCccc--ccccCCCCccEEeccCCCCCCcCC---C---CCCccceecccc
Q 006695 290 LYIGGSSLRQLNLSRNDSESLP--ASITQLSQLRSLHLKDCSMLSSLP---E---LPQSLELLDAEN 348 (635)
Q Consensus 290 l~~~~~~L~~L~Ls~n~~~~lp--~~l~~l~~L~~L~L~~n~~l~~lp---~---l~~sL~~L~l~~ 348 (635)
..+++|++|++++|.++.+| ..+..+++|++|++++|++.+..+ . .+++|+.|++++
T Consensus 85 --~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 85 --EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp --HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred --hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 34688999999999998876 678999999999999987655443 1 246788887753
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.40 E-value=7.5e-13 Score=125.90 Aligned_cols=124 Identities=23% Similarity=0.295 Sum_probs=103.6
Q ss_pred EEecCCCCCCCccCc-ccCCcceEEeccccccccCcc--cccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCC
Q 006695 174 KIDFSSCFNLTEFPQ-ISGNITDLILSETAIQEVPSS--IECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSK 250 (635)
Q Consensus 174 ~L~l~~c~~l~~~p~-~~~~L~~L~L~~n~i~~lp~~--~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~ 250 (635)
.++++++ .++.+|. ...++++|++++|.|+.++.. ++.+++|++|+|++|.+.+..|..|.++++|++|+|++|.+
T Consensus 12 ~l~~s~~-~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 12 TVDCTGR-GLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp EEECTTS-CCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred EEEcCCC-CcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 4444442 3455554 335889999999999999864 89999999999999999988899999999999999999999
Q ss_pred CCcchhhhcCCCCCCEEEecCCCcccc-CchhcccccchhhccCCCCccEEEcCCCCCC
Q 006695 251 LERFPEILEKMESVKCISLERTAITEL-PSSFANLEGLKDLYIGGSSLRQLNLSRNDSE 308 (635)
Q Consensus 251 ~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~ 308 (635)
.+..+..+..+++|+.|++++|+|+.+ |..+ ..+++|+.|+|++|.+.
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----------~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSF----------EHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSS----------TTCTTCCEEECTTCCBC
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHh----------hcCCCCCEEEeCCCCcc
Confidence 988888899999999999999999976 4333 55689999999999975
No 133
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.34 E-value=7.9e-11 Score=125.01 Aligned_cols=186 Identities=11% Similarity=0.042 Sum_probs=102.6
Q ss_pred cceEeecCCCCCCCCCCC-CCCCCceEEEcCCCCCcccc-ccCCCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeecC
Q 006695 56 ELRYLHWHEYPSKALPFD-FEPENLVKLNLPYSKVVQIW-EGKKRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLKN 132 (635)
Q Consensus 56 ~L~~L~l~~~~l~~lp~~-~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~ 132 (635)
+|+.+.+..+ ++.++.. |.-.+|+.+.++. .++.+. ..+.++.+|+.++|.+|.+...... |. ..+|+.+.|..
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~ 212 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV 212 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC
Confidence 3666666544 5555554 4334677777775 566665 3456777777777777664332222 44 47777777764
Q ss_pred CCCCcccCccccCCCCCCEEeecCCCCCCccCCCC-CCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCc-cc
Q 006695 133 CINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNL-HFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPS-SI 210 (635)
Q Consensus 133 n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~-~~ 210 (635)
+ ....-..+|.++++|+.+.+.++ ++.++... .- .+|+.+.+ .+.++.++. .|
T Consensus 213 ~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~---------------------~~L~~i~l-p~~i~~I~~~aF 267 (401)
T 4fdw_A 213 T-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE---------------------SGITTVKL-PNGVTNIASRAF 267 (401)
T ss_dssp T-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT---------------------CCCSEEEE-ETTCCEECTTTT
T ss_pred c-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc---------------------CCccEEEe-CCCccEEChhHh
Confidence 3 22233345777777777777642 33333211 11 23444555 334555543 36
Q ss_pred ccCCCccEEEeeccccc-----ccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEec
Q 006695 211 ECLTNLEKLYINRCMRL-----KRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLE 270 (635)
Q Consensus 211 ~~l~~L~~L~L~~n~~~-----~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~ 270 (635)
.++++|+.+++.++... ..-+..|.++++|+.+++.+ ++...-..+|.++++|+.+.+.
T Consensus 268 ~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 268 YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEEC
T ss_pred hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEEC
Confidence 77777777777765443 23344555666666666653 2333333455555555555553
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.32 E-value=1.6e-11 Score=114.92 Aligned_cols=128 Identities=23% Similarity=0.298 Sum_probs=102.8
Q ss_pred EEecCCCCCCCccCc-ccCCcceEEeccccccccCcc-cccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCC
Q 006695 174 KIDFSSCFNLTEFPQ-ISGNITDLILSETAIQEVPSS-IECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKL 251 (635)
Q Consensus 174 ~L~l~~c~~l~~~p~-~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~ 251 (635)
.++++++ .++.+|. .+.+|++|++++|.++++|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 11 ~l~~~~~-~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 89 (177)
T 2o6r_A 11 EIRCNSK-GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89 (177)
T ss_dssp EEECCSS-CCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEecCC-CCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc
Confidence 3444332 3444443 346889999999999988765 689999999999999988777777889999999999999988
Q ss_pred CcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccc
Q 006695 252 ERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLP 311 (635)
Q Consensus 252 ~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp 311 (635)
+..+..+..+++|+.|++++|.++.+|..+ +..+++|+.|+|++|.+...+
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~---------~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 90 SLPNGVFDKLTQLKELALDTNQLKSVPDGI---------FDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTT---------TTTCTTCCEEECCSSCBCCCH
T ss_pred ccCHHHhhCCcccCEEECcCCcceEeCHHH---------hcCCcccCEEEecCCCeeccC
Confidence 877778899999999999999999888642 345689999999999976543
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.28 E-value=3.3e-12 Score=119.56 Aligned_cols=131 Identities=14% Similarity=0.086 Sum_probs=93.1
Q ss_pred hhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCcccccc
Q 006695 16 QAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEG 95 (635)
Q Consensus 16 ~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~ 95 (635)
..|.++.+|+.|++++|.++. ++ ++.....+|++|++++|.+..++..-.+++|++|++++|.++.+|..
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~---------i~-~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~ 82 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPV---------IE-NLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEG 82 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCS---------CC-CGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSC
T ss_pred HhcCCcCCceEEEeeCCCCch---------hH-HhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcc
Confidence 457778888888888887762 22 34444435888888888888773333678888888888888887766
Q ss_pred C-CCCCCCcEEEccCCCCCCCCC---CCCCCCCCCEEeecCCCCCcccCcc----ccCCCCCCEEeecCCC
Q 006695 96 K-KRAFKLKYVDIHNSQYLIRMP---DLSETPNLERTNLKNCINLTCVPSS----VQNFNHLSMLCFEGCK 158 (635)
Q Consensus 96 ~-~~l~~L~~L~Ls~n~~~~~~p---~l~~l~~L~~L~L~~n~~l~~~~~~----i~~l~~L~~L~L~~~~ 158 (635)
+ ..+++|++|+|++|++. .+| .+..+++|+.|++++|.. ..+|.. +..+++|+.|++++|.
T Consensus 83 ~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 83 LDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred hhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCC
Confidence 5 77888888888888753 344 367778888888888754 345553 7777888888877764
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.25 E-value=2.3e-11 Score=113.58 Aligned_cols=107 Identities=17% Similarity=0.208 Sum_probs=61.9
Q ss_pred ceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCC
Q 006695 194 TDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTA 273 (635)
Q Consensus 194 ~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~ 273 (635)
+.++++++.++++|..+. ++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+..+..|..+++|+.|+|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567777777777776553 666777777766666556666666666666666665555444445555555555555555
Q ss_pred ccccCchhcccccchhhccCCCCccEEEcCCCCCCccc
Q 006695 274 ITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLP 311 (635)
Q Consensus 274 l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp 311 (635)
|+.+|.. .+..+++|+.|+|++|.+...+
T Consensus 93 l~~l~~~---------~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 93 LKSIPRG---------AFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCTT---------TTTTCTTCSEEECCSSCBCTTB
T ss_pred cceeCHH---------HhccccCCCEEEeCCCCccccc
Confidence 5555432 1123345555555555544333
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.23 E-value=4.3e-11 Score=111.24 Aligned_cols=85 Identities=21% Similarity=0.247 Sum_probs=53.0
Q ss_pred cceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCC
Q 006695 193 ITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERT 272 (635)
Q Consensus 193 L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n 272 (635)
.+.+++++|.++++|..+. ++|+.|+|++|.+.+..|..|.++++|++|+|++|.+.+..+..|..+++|+.|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4567777777777776552 66677777776666655666666666666666666555544445555555555555555
Q ss_pred CccccCc
Q 006695 273 AITELPS 279 (635)
Q Consensus 273 ~l~~lp~ 279 (635)
+|+.+|.
T Consensus 89 ~l~~~~~ 95 (170)
T 3g39_A 89 QLKSIPR 95 (170)
T ss_dssp CCCCCCT
T ss_pred ccCEeCH
Confidence 5555543
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.20 E-value=3e-13 Score=129.29 Aligned_cols=119 Identities=17% Similarity=0.236 Sum_probs=72.4
Q ss_pred cccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchh
Q 006695 202 AIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSF 281 (635)
Q Consensus 202 ~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~ 281 (635)
.++.+|..+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.+| .+
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~ 111 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GI 111 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-cc
Confidence 344455566666666666666666544 44 5566666666666666544 45555555666777777777666654 22
Q ss_pred cccccchhhccCCCCccEEEcCCCCCCcccc--cccCCCCccEEeccCCCCCCcC
Q 006695 282 ANLEGLKDLYIGGSSLRQLNLSRNDSESLPA--SITQLSQLRSLHLKDCSMLSSL 334 (635)
Q Consensus 282 ~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~--~l~~l~~L~~L~L~~n~~l~~l 334 (635)
..+++|+.|++++|.++.++. .+..+++|++|++++|++.+.+
T Consensus 112 ----------~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 112 ----------EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp ----------HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred ----------ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 223566777777777666654 4666777777777776654443
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.19 E-value=1.5e-13 Score=131.35 Aligned_cols=135 Identities=21% Similarity=0.172 Sum_probs=105.8
Q ss_pred cccCCCccEEEeecccccccchh------cccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcc
Q 006695 210 IECLTNLEKLYINRCMRLKRLST------SICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFAN 283 (635)
Q Consensus 210 ~~~l~~L~~L~L~~n~~~~~lp~------~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~ 283 (635)
+.....++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.++.+|..+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~ 91 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAV 91 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhc
Confidence 44556667777777776666554 88899999999999987766 66 888999999999999999988865533
Q ss_pred cccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCC----CCCCccceecccccccccccCc
Q 006695 284 LEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLP----ELPQSLELLDAENCKQLQFIPE 357 (635)
Q Consensus 284 l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp----~l~~sL~~L~l~~c~~l~~~~~ 357 (635)
+++|+.|++++|+++.+| .+..+++|++|++++|++...-+ ..+++|++|++++|+.....|.
T Consensus 92 ----------~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 92 ----------ADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp ----------HHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred ----------CCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 478999999999999988 68889999999999987654221 1357899999999976555443
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.18 E-value=1.8e-09 Score=114.54 Aligned_cols=208 Identities=10% Similarity=0.119 Sum_probs=109.9
Q ss_pred CCcEEEccCCCCCCCCC--CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCC-CCCCCCcEEec
Q 006695 101 KLKYVDIHNSQYLIRMP--DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSN-LHFMSPIKIDF 177 (635)
Q Consensus 101 ~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~-~~l~~L~~L~l 177 (635)
+|+.+.+..+ +..++ .|.+ .+|+.+.+.. .....-..+|..+++|+.+++.+|+ ++.++.. +...+|+.+.+
T Consensus 136 ~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEe
Confidence 4555555444 22233 2444 2455555553 1222222345555555555555432 3333322 23344444444
Q ss_pred CCCCCCCccCcc----cCCcceEEeccccccccCcc-cccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCC-
Q 006695 178 SSCFNLTEFPQI----SGNITDLILSETAIQEVPSS-IECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKL- 251 (635)
Q Consensus 178 ~~c~~l~~~p~~----~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~- 251 (635)
.. .++.++.. ..+|+.+.+..+ ++.++.. |.+ .+|+.+.+.+ .+...-...|.++++|+.+++.++...
T Consensus 211 p~--~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~ 285 (401)
T 4fdw_A 211 PV--TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFND 285 (401)
T ss_dssp CT--TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCC
T ss_pred CC--chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccC
Confidence 32 13332211 134555555542 4555543 444 6777777743 344444566777777777777765443
Q ss_pred ----CcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc-cccCCCCccEEecc
Q 006695 252 ----ERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA-SITQLSQLRSLHLK 326 (635)
Q Consensus 252 ----~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~-~l~~l~~L~~L~L~ 326 (635)
......|.++++|+.+.+. +.++.++.. .+.++++|+.++|..+ ++.|+. .+.++ +|+.|++.
T Consensus 286 ~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~---------aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~ 353 (401)
T 4fdw_A 286 DPEAMIHPYCLEGCPKLARFEIP-ESIRILGQG---------LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVE 353 (401)
T ss_dssp CTTCEECTTTTTTCTTCCEECCC-TTCCEECTT---------TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEEC
T ss_pred CcccEECHHHhhCCccCCeEEeC-CceEEEhhh---------hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEc
Confidence 2344567777777777776 346666542 3455677777777444 666654 35666 77777777
Q ss_pred CCCC
Q 006695 327 DCSM 330 (635)
Q Consensus 327 ~n~~ 330 (635)
+|..
T Consensus 354 ~n~~ 357 (401)
T 4fdw_A 354 GTTP 357 (401)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7644
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.13 E-value=2.1e-10 Score=106.99 Aligned_cols=104 Identities=15% Similarity=0.227 Sum_probs=84.8
Q ss_pred ccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCC
Q 006695 216 LEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGS 295 (635)
Q Consensus 216 L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~ 295 (635)
-+.+++++|.+ +.+|..+. ++|++|+|++|.+.+..|..|..+++|+.|+|++|+|+.+|... +..++
T Consensus 14 ~~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~---------~~~l~ 81 (174)
T 2r9u_A 14 QTLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGV---------FDKLT 81 (174)
T ss_dssp SSEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---------TTTCT
T ss_pred CcEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhH---------hCCcc
Confidence 36788888776 45666554 88999999999988888888999999999999999999887642 34568
Q ss_pred CccEEEcCCCCCCccccc-ccCCCCccEEeccCCCCC
Q 006695 296 SLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSML 331 (635)
Q Consensus 296 ~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~l 331 (635)
+|+.|+|++|+++.+|.. +..+++|++|+|++|++.
T Consensus 82 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred hhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 899999999999888875 788889999998887654
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.08 E-value=1.1e-08 Score=108.32 Aligned_cols=287 Identities=13% Similarity=0.112 Sum_probs=144.1
Q ss_pred cccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCceEEEcCC
Q 006695 9 TSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENLVKLNLPY 86 (635)
Q Consensus 9 ~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~ 86 (635)
.++.|...||.++++|+.+.|..+ ++ .+......-..+|+.+.+..+ ++.++.. | ...+|+.+.++.
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~---------~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VR---------EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL 126 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CC---------EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-cc---------CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence 356788889999999999988642 43 333333332234777777543 5666654 4 566777666654
Q ss_pred CCCcccc-ccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCC
Q 006695 87 SKVVQIW-EGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPS 165 (635)
Q Consensus 87 n~l~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~ 165 (635)
+ ++.+. ..+..+..++........ ......|.++++|+.+.+.++ ....-...|..+.+|+.+.+..+ ++.++.
T Consensus 127 ~-l~~i~~~aF~~~~~~~~~~~~~~~-~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~ 201 (394)
T 4fs7_A 127 M-LKSIGVEAFKGCDFKEITIPEGVT-VIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRD 201 (394)
T ss_dssp T-CCEECTTTTTTCCCSEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECT
T ss_pred c-eeeecceeeecccccccccCcccc-ccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCc
Confidence 3 33332 223344333222222211 111123777777777777653 22222345667777777776543 343333
Q ss_pred CC--CCCCCcEEecCCCCC-CCccCcccCCcceEEeccccccccCc-ccccCCCccEEEeecccccccchhcccCCCCCc
Q 006695 166 NL--HFMSPIKIDFSSCFN-LTEFPQISGNITDLILSETAIQEVPS-SIECLTNLEKLYINRCMRLKRLSTSICKLKSLH 241 (635)
Q Consensus 166 ~~--~l~~L~~L~l~~c~~-l~~~p~~~~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~ 241 (635)
.. .+..|+.+.+..... +........+|+.+.+..+ ++.+.. .+..+..|+.+.+..+. .......|..+..++
T Consensus 202 ~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~ 279 (394)
T 4fs7_A 202 YCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLK 279 (394)
T ss_dssp TTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCC
T ss_pred hhhccccccceeecCCCceEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCc-ceeeccccccccccc
Confidence 22 444454444432110 0011111134555555432 233332 35566666666665532 223334455566666
Q ss_pred EEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc-cccCCCCc
Q 006695 242 VLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA-SITQLSQL 320 (635)
Q Consensus 242 ~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~-~l~~l~~L 320 (635)
.+...... .....|..+.+|+.+.+.++ ++.++. ..+.++.+|+.++|..+ ++.|+. .+.++.+|
T Consensus 280 ~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~---------~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L 345 (394)
T 4fs7_A 280 KVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGE---------EAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSL 345 (394)
T ss_dssp EEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECT---------TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTC
T ss_pred eeccCcee---eccccccccccccccccccc-cceech---------hhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCC
Confidence 66554421 12234556666666666443 444433 12344566666666433 555543 35566666
Q ss_pred cEEeccC
Q 006695 321 RSLHLKD 327 (635)
Q Consensus 321 ~~L~L~~ 327 (635)
+.+++..
T Consensus 346 ~~i~lp~ 352 (394)
T 4fs7_A 346 SNINFPL 352 (394)
T ss_dssp CEECCCT
T ss_pred CEEEECc
Confidence 6666543
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.08 E-value=4.8e-10 Score=104.15 Aligned_cols=106 Identities=22% Similarity=0.208 Sum_probs=87.1
Q ss_pred cEEecCCCCCCCccCc-ccCCcceEEecccccccc-CcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCC
Q 006695 173 IKIDFSSCFNLTEFPQ-ISGNITDLILSETAIQEV-PSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSK 250 (635)
Q Consensus 173 ~~L~l~~c~~l~~~p~-~~~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~ 250 (635)
+.+++++ +.++.+|. ...++++|+|++|.|+++ |..+.++++|++|+|++|.+.+..+..|.++++|++|+|++|.+
T Consensus 12 ~~l~~s~-n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 12 TTVDCSG-KSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp TEEECTT-SCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCC-CCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 3444444 23444553 346899999999999998 45699999999999999999887777889999999999999998
Q ss_pred CCcchhhhcCCCCCCEEEecCCCccccCc
Q 006695 251 LERFPEILEKMESVKCISLERTAITELPS 279 (635)
Q Consensus 251 ~~~~~~~l~~l~~L~~L~L~~n~l~~lp~ 279 (635)
.+..+..|..+++|+.|+|++|.++..+.
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 88777789999999999999999885543
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.01 E-value=3.8e-08 Score=104.18 Aligned_cols=290 Identities=16% Similarity=0.120 Sum_probs=178.6
Q ss_pred eecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-CCCCCceE
Q 006695 3 LDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-FEPENLVK 81 (635)
Q Consensus 3 LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~~l~~L~~ 81 (635)
+++.. .+..|...||.++++|+.+++.++ ++ .+......-...|+.+.+..+ ++.+... |.-..+..
T Consensus 76 i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~---------~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 76 IKIPS-TVREIGEFAFENCSKLEIINIPDS-VK---------MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE 143 (394)
T ss_dssp EECCT-TCCEECTTTTTTCTTCCEECCCTT-CC---------EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred EEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce---------EccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence 45553 477899999999999999999654 33 222322222223554444322 3333332 32222333
Q ss_pred EEcCCCCCccc-cccCCCCCCCcEEEccCCCCCCCCC--CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCC
Q 006695 82 LNLPYSKVVQI-WEGKKRAFKLKYVDIHNSQYLIRMP--DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCK 158 (635)
Q Consensus 82 L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~ 158 (635)
..+.. .+..+ ...+.++.+|+.+.+.++. ..++ .|.++.+|+.+.+..+ ....-...+..+..|+.+.+..+.
T Consensus 144 ~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 144 ITIPE-GVTVIGDEAFATCESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL 219 (394)
T ss_dssp EECCT-TCCEECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred cccCc-cccccchhhhcccCCCcEEecCCcc--ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc
Confidence 33322 22223 2456788888888887653 2333 4788888888888764 222333457777788877765432
Q ss_pred CCCccC-CCCCCCCCcEEecCCCCCCCccC----cccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhc
Q 006695 159 SLRSFP-SNLHFMSPIKIDFSSCFNLTEFP----QISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTS 233 (635)
Q Consensus 159 ~l~~lp-~~~~l~~L~~L~l~~c~~l~~~p----~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~ 233 (635)
..+. ..+...+|+.+.+.. .++.+. ....+++.+.+..+...--...+..+..++.+.+.... .....
T Consensus 220 --~~i~~~~~~~~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~ 292 (394)
T 4fs7_A 220 --YYLGDFALSKTGVKNIIIPD--SFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKT 292 (394)
T ss_dssp --CEECTTTTTTCCCCEEEECT--TCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTT
T ss_pred --eEeehhhcccCCCceEEECC--CceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee---ecccc
Confidence 2222 223556777777653 222222 12256777777665433233457888888888776643 22345
Q ss_pred ccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc-
Q 006695 234 ICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA- 312 (635)
Q Consensus 234 ~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~- 312 (635)
|..+.+|+.+.+..+ ....-..+|.++.+|+.+.+.. .++.++. ..+.++++|+.+++..+ ++.|+.
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~---------~aF~~c~~L~~i~lp~~-l~~I~~~ 360 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGK---------RSFRGCTSLSNINFPLS-LRKIGAN 360 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECT---------TTTTTCTTCCEECCCTT-CCEECTT
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhH---------HhccCCCCCCEEEECcc-ccEehHH
Confidence 778899999998763 4444456788999999999864 3666654 24566789999999876 777765
Q ss_pred cccCCCCccEEeccC
Q 006695 313 SITQLSQLRSLHLKD 327 (635)
Q Consensus 313 ~l~~l~~L~~L~L~~ 327 (635)
.+.++.+|+.+++..
T Consensus 361 aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 361 AFQGCINLKKVELPK 375 (394)
T ss_dssp TBTTCTTCCEEEEEG
T ss_pred HhhCCCCCCEEEECC
Confidence 478888898888764
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.97 E-value=1.6e-09 Score=112.74 Aligned_cols=105 Identities=20% Similarity=0.161 Sum_probs=84.4
Q ss_pred eEEeccc-cccccCcccccCCCccEEEeec-ccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCC
Q 006695 195 DLILSET-AIQEVPSSIECLTNLEKLYINR-CMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERT 272 (635)
Q Consensus 195 ~L~L~~n-~i~~lp~~~~~l~~L~~L~L~~-n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n 272 (635)
.++.+++ +++++|. +..+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|.+.+..|..|.++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4677777 8889998 88899999999986 8877777788889999999999999888888888888999999999999
Q ss_pred CccccCchhcccccchhhccCCCCccEEEcCCCCCCcc
Q 006695 273 AITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESL 310 (635)
Q Consensus 273 ~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~l 310 (635)
+|+.+|..+. ..+ .|+.|+|.+|.+...
T Consensus 91 ~l~~~~~~~~---------~~~-~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 91 ALESLSWKTV---------QGL-SLQELVLSGNPLHCS 118 (347)
T ss_dssp CCSCCCSTTT---------CSC-CCCEEECCSSCCCCC
T ss_pred ccceeCHHHc---------ccC-CceEEEeeCCCccCC
Confidence 8888876432 122 388888888876543
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.86 E-value=1.1e-09 Score=114.88 Aligned_cols=135 Identities=17% Similarity=0.132 Sum_probs=76.9
Q ss_pred CcceEEeccccccc--cCcccccCCCccEEEeecccccccchhcc-----cCCCCCcEEecCCCCCCC----cchhhhcC
Q 006695 192 NITDLILSETAIQE--VPSSIECLTNLEKLYINRCMRLKRLSTSI-----CKLKSLHVLVLDDCSKLE----RFPEILEK 260 (635)
Q Consensus 192 ~L~~L~L~~n~i~~--lp~~~~~l~~L~~L~L~~n~~~~~lp~~~-----~~l~~L~~L~Ls~n~~~~----~~~~~l~~ 260 (635)
+|++|+|++|.++. +..-...+++|+.|+|++|.+.......+ ...++|++|+|++|.+.. .++..+..
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~ 181 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG 181 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence 45556666665543 11122345567777777776654332222 235667777777776543 24445566
Q ss_pred CCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCc-----ccccccCCCCccEEeccCCCCC
Q 006695 261 MESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSES-----LPASITQLSQLRSLHLKDCSML 331 (635)
Q Consensus 261 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~-----lp~~l~~l~~L~~L~L~~n~~l 331 (635)
+++|++|+|++|.|+.... ..|...+...++|++|+|++|.++. ++..+...++|++|+|++|.+.
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~-----~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGL-----ELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp CSSCCEEECTTSSCHHHHH-----HHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred CCCcCEEeCCCCCCCcHHH-----HHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 7777777777777663210 1122233445677777777777653 3334455677777777777654
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.82 E-value=9.9e-09 Score=106.61 Aligned_cols=105 Identities=19% Similarity=0.151 Sum_probs=80.8
Q ss_pred EEEeecccccccchhcccCCCCCcEEecCC-CCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCC
Q 006695 218 KLYINRCMRLKRLSTSICKLKSLHVLVLDD-CSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSS 296 (635)
Q Consensus 218 ~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~-n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~ 296 (635)
.++.++++.+..+|. +..+++|+.|+|++ |.+.+..+..|..+++|+.|+|++|+|+.+|.. .+..+++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~---------~~~~l~~ 81 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD---------AFHFTPR 81 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT---------GGGSCSC
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH---------HhcCCcC
Confidence 457777634456787 88899999999986 777776667889999999999999999887652 2355688
Q ss_pred ccEEEcCCCCCCcccccccCCCCccEEeccCCCCCC
Q 006695 297 LRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLS 332 (635)
Q Consensus 297 L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~ 332 (635)
|+.|+|++|+++.+|..+.....|+.|+|.+|++..
T Consensus 82 L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 82 LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred CCEEeCCCCccceeCHHHcccCCceEEEeeCCCccC
Confidence 999999999998888765433348888888876643
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.78 E-value=5.6e-10 Score=117.27 Aligned_cols=115 Identities=13% Similarity=0.054 Sum_probs=76.3
Q ss_pred CCcceEEeccccccccC-----ccc-ccCCCccEEEeecccccc----cchhcccCCCCCcEEecCCCCCCCc----chh
Q 006695 191 GNITDLILSETAIQEVP-----SSI-ECLTNLEKLYINRCMRLK----RLSTSICKLKSLHVLVLDDCSKLER----FPE 256 (635)
Q Consensus 191 ~~L~~L~L~~n~i~~lp-----~~~-~~l~~L~~L~L~~n~~~~----~lp~~~~~l~~L~~L~Ls~n~~~~~----~~~ 256 (635)
.+|++|+|++|.|+... ..+ ...++|++|+|++|.+.. .++..+..+++|++|+|++|.+... +..
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 35666666666665322 122 245678888888887654 3445556788888899988886542 356
Q ss_pred hhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcc
Q 006695 257 ILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESL 310 (635)
Q Consensus 257 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~l 310 (635)
.+...++|+.|+|++|.|+.... ..+...+...++|++|+|++|.++..
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~-----~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAA-----LALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHH-----HHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHhcCCCcCeEECCCCCCCHHHH-----HHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 67778889999999998874321 11222334567899999999987654
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.77 E-value=1.3e-06 Score=92.42 Aligned_cols=287 Identities=13% Similarity=0.156 Sum_probs=143.6
Q ss_pred ccccChhhhcCCC-CCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCC---CCCCCCC-C-CCCCceEEE
Q 006695 10 SIHLSPQAFANMP-NLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYP---SKALPFD-F-EPENLVKLN 83 (635)
Q Consensus 10 ~~~l~~~~f~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~---l~~lp~~-~-~l~~L~~L~ 83 (635)
++.|...||.+.+ .|+.+.+-.+ ++ .+......-..+|+.+.+..+. ++.++.. | ...+|+.+.
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt---------~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~ 120 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VT---------EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIP 120 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CC---------EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCG
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-ee---------EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeec
Confidence 4567777888774 5888777542 32 2333323222347777776553 5555554 4 466777666
Q ss_pred cCCCCCcccc-ccCCCCCCCcEEEccCCCCCCCCC--CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCC
Q 006695 84 LPYSKVVQIW-EGKKRAFKLKYVDIHNSQYLIRMP--DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSL 160 (635)
Q Consensus 84 L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l 160 (635)
+..+ ++.+. ..+..+.+|+.+.+..+. ..++ .+..+.+|+.+.+..+ ...+........+|+.+.+... .
T Consensus 121 ~~~~-~~~I~~~aF~~c~~L~~i~lp~~~--~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~--~ 193 (394)
T 4gt6_A 121 ILDS-VTEIDSEAFHHCEELDTVTIPEGV--TSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAK--V 193 (394)
T ss_dssp GGTT-CSEECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTT--C
T ss_pred cCCc-cceehhhhhhhhccccccccccee--eeecccceecccccccccccce--eeEeccccccccceeEEEECCc--c
Confidence 6543 44454 335677777777776542 3333 3677777777777653 3333333223356777766432 1
Q ss_pred CccCCCC--CCCCCcEEecCCCCCCCccCccc-----------------CCcceEEeccccccccC-cccccCCCccEEE
Q 006695 161 RSFPSNL--HFMSPIKIDFSSCFNLTEFPQIS-----------------GNITDLILSETAIQEVP-SSIECLTNLEKLY 220 (635)
Q Consensus 161 ~~lp~~~--~l~~L~~L~l~~c~~l~~~p~~~-----------------~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~ 220 (635)
..+.... .+.++......... ........ ..+..+.+. +.++.+. ..|.++.+|+.+.
T Consensus 194 ~~i~~~af~~c~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~ 271 (394)
T 4gt6_A 194 TRIGTNAFSECFALSTITSDSES-YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVK 271 (394)
T ss_dssp CEECTTTTTTCTTCCEEEECCSS-SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEE
T ss_pred cccccchhhhccccceecccccc-cccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEe
Confidence 2221111 34444444332211 00000000 011111111 1222232 2355666666666
Q ss_pred eecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEE
Q 006695 221 INRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQL 300 (635)
Q Consensus 221 L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L 300 (635)
+..+. ...-...|.++++|+.+.+.. .....-...|.++.+|+.+.+..+ ++.+.. ..+.++.+|+.+
T Consensus 272 lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~---------~aF~~C~~L~~i 339 (394)
T 4gt6_A 272 MPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILD---------DAFAGCEQLERI 339 (394)
T ss_dssp CCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECT---------TTTTTCTTCCEE
T ss_pred ccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehH---------hHhhCCCCCCEE
Confidence 65432 223334556666666666643 333333445666666666666532 444433 234455666666
Q ss_pred EcCCCCCCcccc-cccCCCCccEEeccCC
Q 006695 301 NLSRNDSESLPA-SITQLSQLRSLHLKDC 328 (635)
Q Consensus 301 ~Ls~n~~~~lp~-~l~~l~~L~~L~L~~n 328 (635)
.|..+ ++.|.. .+.++.+|+.+++.++
T Consensus 340 ~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 340 AIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp EECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred EECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 66433 555543 3566666666666653
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.70 E-value=2.9e-06 Score=89.55 Aligned_cols=290 Identities=12% Similarity=0.154 Sum_probs=170.8
Q ss_pred cccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCceEEEcCC
Q 006695 9 TSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENLVKLNLPY 86 (635)
Q Consensus 9 ~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~ 86 (635)
.+..|...||.++++|+.+.+..|.-..+. .+......-..+|+.+.+..+ ++.++.. | ...+|+.+.+..
T Consensus 74 svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~------~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~ 146 (394)
T 4gt6_A 74 TVTEIGSNAFYNCTSLKRVTIQDNKPSCVK------KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPE 146 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEEEGGGCCCCCC------EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCT
T ss_pred CeeEEhHHHhhCCccCceEeecCCCCCeee------EechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccc
Confidence 367789999999999999999875311110 233333332234665555433 5555554 4 678999999975
Q ss_pred CCCcccc-ccCCCCCCCcEEEccCCCCCCCCC--CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCcc
Q 006695 87 SKVVQIW-EGKKRAFKLKYVDIHNSQYLIRMP--DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSF 163 (635)
Q Consensus 87 n~l~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~l 163 (635)
+ +..+. ..+..+.+|+.+.+..+ +..+. .|.. .+|+.+.+... ....-...+..+.+|......... ...+
T Consensus 147 ~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~-~~~~ 220 (394)
T 4gt6_A 147 G-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAK-VTRIGTNAFSECFALSTITSDSES-YPAI 220 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSS-SCBS
T ss_pred e-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECCc-ccccccchhhhccccceecccccc-cccc
Confidence 4 44454 44678889999998775 33333 3543 67888888754 333334557777777777654422 1111
Q ss_pred CCCC---------------CCCCCcEEecCCCCCCCccCc----ccCCcceEEeccccccccC-cccccCCCccEEEeec
Q 006695 164 PSNL---------------HFMSPIKIDFSSCFNLTEFPQ----ISGNITDLILSETAIQEVP-SSIECLTNLEKLYINR 223 (635)
Q Consensus 164 p~~~---------------~l~~L~~L~l~~c~~l~~~p~----~~~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~L~~ 223 (635)
...+ ....+..+.+.. .++.+.. ...+|+.+.+..+. ..+. ..+.++++|+.+.+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~--~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~ 297 (394)
T 4gt6_A 221 DNVLYEKSANGDYALIRYPSQREDPAFKIPN--GVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS 297 (394)
T ss_dssp SSCEEEECTTSCEEEEECCTTCCCSEEECCT--TEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT
T ss_pred cceeecccccccccccccccccccceEEcCC--cceEcccceeeecccccEEeccccc-ceecCcccccccccccccCCC
Confidence 1110 111122222110 1111110 11356667665443 3444 3478889999999864
Q ss_pred ccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcC
Q 006695 224 CMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLS 303 (635)
Q Consensus 224 n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls 303 (635)
.+...-...|.++.+|+.++|..+ ....-..+|.++.+|+.+.+.. .++.+.. ..+.++++|+.+++.
T Consensus 298 -~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~-sv~~I~~---------~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 298 -RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS-SVTKIPE---------SAFSNCTALNNIEYS 365 (394)
T ss_dssp -TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT-TCCBCCG---------GGGTTCTTCCEEEES
T ss_pred -cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc-ccCEEhH---------hHhhCCCCCCEEEEC
Confidence 344444567888999999999763 4444456899999999999964 3677764 346777899999998
Q ss_pred CCCCCcccccccCCCCccEEeccCC
Q 006695 304 RNDSESLPASITQLSQLRSLHLKDC 328 (635)
Q Consensus 304 ~n~~~~lp~~l~~l~~L~~L~L~~n 328 (635)
++... + ..+....+|+.+.+..+
T Consensus 366 ~~~~~-~-~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 366 GSRSQ-W-NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp SCHHH-H-HTCBCCCCC--------
T ss_pred Cceee-h-hhhhccCCCCEEEeCCC
Confidence 87532 1 24566777877777654
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.61 E-value=6.6e-06 Score=86.27 Aligned_cols=122 Identities=10% Similarity=0.153 Sum_probs=67.2
Q ss_pred CcceEEeccccccccC-cccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEec
Q 006695 192 NITDLILSETAIQEVP-SSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLE 270 (635)
Q Consensus 192 ~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~ 270 (635)
+++.+.+..+ ++.+. ..+.++..|+.+.+..+ +...-...|.++.+|+.+.+.. .....-...|.++++|+.+.+.
T Consensus 218 ~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~ 294 (379)
T 4h09_A 218 NLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMD 294 (379)
T ss_dssp SCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEEC
T ss_pred ccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccccccccc
Confidence 3444444322 33333 23566667777776553 3333344566667777777654 2333333456667777777777
Q ss_pred CCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc-cccCCCCccEEecc
Q 006695 271 RTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA-SITQLSQLRSLHLK 326 (635)
Q Consensus 271 ~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~-~l~~l~~L~~L~L~ 326 (635)
++.++.++.. .+.++.+|+.+.|..+ ++.|.. .+.++.+|+.+.+.
T Consensus 295 ~~~i~~I~~~---------aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 295 NSAIETLEPR---------VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CTTCCEECTT---------TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccceehhh---------hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 6666666542 3445566777776543 555543 35666666665553
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.47 E-value=1.4e-07 Score=98.39 Aligned_cols=16 Identities=19% Similarity=0.405 Sum_probs=11.4
Q ss_pred ccccCCCCCCEEeecC
Q 006695 141 SSVQNFNHLSMLCFEG 156 (635)
Q Consensus 141 ~~i~~l~~L~~L~L~~ 156 (635)
.++..+++|+.|.+.+
T Consensus 133 ~s~~~l~~L~~L~l~~ 148 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGD 148 (362)
T ss_dssp TTHHHHTTCSEEEECC
T ss_pred HhhhhcchhhheeecC
Confidence 3456678888888865
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.42 E-value=1.8e-07 Score=97.49 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=88.8
Q ss_pred CCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCcccc--CCCCCCEEeecCCCCCCccCCCCCCCCCc
Q 006695 96 KKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQ--NFNHLSMLCFEGCKSLRSFPSNLHFMSPI 173 (635)
Q Consensus 96 ~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~--~l~~L~~L~L~~~~~l~~lp~~~~l~~L~ 173 (635)
+..+++|+.|+|++|... .++.+. +++|++|+|..|.........+. .+++|+.|+|+.+..... .. .....
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~-~~-~~~~~-- 241 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYG-FD-GDMNV-- 241 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGT-CC-SCGGG--
T ss_pred HhcCCCCcEEEEeCCCCc-eecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccc-cc-hhHHH--
Confidence 456677888888776322 233343 67888888877654433222332 677788877753210000 00 00000
Q ss_pred EEecCCCCCCCc-cC-cccCCcceEEeccccccc-cCccc---ccCCCccEEEeeccccccc----chhcccCCCCCcEE
Q 006695 174 KIDFSSCFNLTE-FP-QISGNITDLILSETAIQE-VPSSI---ECLTNLEKLYINRCMRLKR----LSTSICKLKSLHVL 243 (635)
Q Consensus 174 ~L~l~~c~~l~~-~p-~~~~~L~~L~L~~n~i~~-lp~~~---~~l~~L~~L~L~~n~~~~~----lp~~~~~l~~L~~L 243 (635)
+.. +. ..+++|+.|.|.+|.+.. .+..+ ..+++|++|+|+.|.+... ++..+..+++|+.|
T Consensus 242 ---------l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L 312 (362)
T 2ra8_A 242 ---------FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI 312 (362)
T ss_dssp ---------TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEE
T ss_pred ---------HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEE
Confidence 000 00 124567777777776653 11111 3577888888888876553 33444567888888
Q ss_pred ecCCCCCCCcchhhhcC-CCCCCEEEecCCC
Q 006695 244 VLDDCSKLERFPEILEK-MESVKCISLERTA 273 (635)
Q Consensus 244 ~Ls~n~~~~~~~~~l~~-l~~L~~L~L~~n~ 273 (635)
+|++|.+....-..+.. + ...++++++.
T Consensus 313 ~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 313 NMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp ECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred ECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 88888765443333332 2 3567887776
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.27 E-value=0.00015 Score=75.73 Aligned_cols=126 Identities=16% Similarity=0.187 Sum_probs=87.4
Q ss_pred cccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccc
Q 006695 208 SSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGL 287 (635)
Q Consensus 208 ~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L 287 (635)
..+..+.+|+.+.+..+ ........+.++..|+.+.+..+ ....-...|.++.+|+.+.+.. .++.++..
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~------- 280 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYL------- 280 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTT-------
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccc-------
Confidence 34667778888887653 33344456778889999998764 4444456788889999998864 35555542
Q ss_pred hhhccCCCCccEEEcCCCCCCcccc-cccCCCCccEEeccCCCCCCcCCCC----CCccceeccc
Q 006695 288 KDLYIGGSSLRQLNLSRNDSESLPA-SITQLSQLRSLHLKDCSMLSSLPEL----PQSLELLDAE 347 (635)
Q Consensus 288 ~~l~~~~~~L~~L~Ls~n~~~~lp~-~l~~l~~L~~L~L~~n~~l~~lp~l----~~sL~~L~l~ 347 (635)
.+..+++|+.+.+.++.++.|+. .+.++.+|+.+.|..+ ++.|... -.+|+.+.+.
T Consensus 281 --aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 281 --LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp --TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred --ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 35667899999999998988875 4789999999998642 4455431 1455555553
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.16 E-value=1.1e-06 Score=82.35 Aligned_cols=66 Identities=12% Similarity=0.138 Sum_probs=31.4
Q ss_pred cccCCCccEEEeecc-cccc----cchhcccCCCCCcEEecCCCCCCCc----chhhhcCCCCCCEEEecCCCcc
Q 006695 210 IECLTNLEKLYINRC-MRLK----RLSTSICKLKSLHVLVLDDCSKLER----FPEILEKMESVKCISLERTAIT 275 (635)
Q Consensus 210 ~~~l~~L~~L~L~~n-~~~~----~lp~~~~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~ 275 (635)
+...+.|++|+|++| .+.. .+...+...++|++|+|++|.+... +...+...++|++|+|++|.|+
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 344555566666555 4322 1233344455555555555554321 2233344455555555555554
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.02 E-value=1.4e-06 Score=86.25 Aligned_cols=69 Identities=20% Similarity=0.347 Sum_probs=38.1
Q ss_pred cCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCC--CccEEeccCCCCCCcCC
Q 006695 259 EKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLS--QLRSLHLKDCSMLSSLP 335 (635)
Q Consensus 259 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~--~L~~L~L~~n~~l~~lp 335 (635)
.++++|+.|+|++|+|+.++. ++..+..+++|+.|+|++|.+..+. .+..+. +|++|+|++|++.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~-------l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDD-------MSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGG-------GTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCcc-------chhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 345666666666666665432 1122234566666666666666552 233333 66777777766665554
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.02 E-value=1.9e-06 Score=80.83 Aligned_cols=113 Identities=11% Similarity=0.100 Sum_probs=73.4
Q ss_pred CCcceEEeccc-cccc-----cCcccccCCCccEEEeeccccccc----chhcccCCCCCcEEecCCCCCCCc----chh
Q 006695 191 GNITDLILSET-AIQE-----VPSSIECLTNLEKLYINRCMRLKR----LSTSICKLKSLHVLVLDDCSKLER----FPE 256 (635)
Q Consensus 191 ~~L~~L~L~~n-~i~~-----lp~~~~~l~~L~~L~L~~n~~~~~----lp~~~~~l~~L~~L~Ls~n~~~~~----~~~ 256 (635)
++|++|+|++| .|.. +...+...++|++|+|++|.+... +...+...++|++|+|++|.+... +..
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~ 115 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE 115 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence 45677777776 6652 444566678888899988887542 344555678899999999887653 455
Q ss_pred hhcCCCCCCEEEe--cCCCccccCchhcccccchhhccCCCCccEEEcCCCCCC
Q 006695 257 ILEKMESVKCISL--ERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSE 308 (635)
Q Consensus 257 ~l~~l~~L~~L~L--~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~ 308 (635)
.+...++|++|+| ++|.|+.-- ...+...+...++|++|+|++|.++
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g-----~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNV-----EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHH-----HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHH-----HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 6677778888888 778776311 0111223334567777777777653
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.81 E-value=6.2e-06 Score=81.62 Aligned_cols=82 Identities=17% Similarity=0.201 Sum_probs=57.0
Q ss_pred cCCCCCcEEecCCCCCCC--cchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCC-ccc
Q 006695 235 CKLKSLHVLVLDDCSKLE--RFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSE-SLP 311 (635)
Q Consensus 235 ~~l~~L~~L~Ls~n~~~~--~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~-~lp 311 (635)
.++++|+.|+|++|.+.+ .++..+..+++|+.|+|++|.|+.+. .+..+ ..+ +|++|+|++|.+. .+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l-------~~l-~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKI-------KGL-KLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGG-------TTS-CCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhc-------ccC-CcceEEccCCcCccccC
Confidence 457788888888887766 45567778888888888888888762 23222 123 7888999998875 344
Q ss_pred c-------cccCCCCccEEec
Q 006695 312 A-------SITQLSQLRSLHL 325 (635)
Q Consensus 312 ~-------~l~~l~~L~~L~L 325 (635)
. .+..+++|+.||=
T Consensus 238 ~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 238 DQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp SHHHHHHHHHHHCTTCCEESS
T ss_pred cchhHHHHHHHHCcccCeECC
Confidence 2 2567788887763
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.73 E-value=1.6e-05 Score=73.24 Aligned_cols=93 Identities=14% Similarity=0.219 Sum_probs=55.3
Q ss_pred CCCCCC-CCCCceEEEcCCCCCccc-cccCCCCCCCcEEEccCCCCCCCCC--CCCCC----CCCCEEeecCCCCCcc-c
Q 006695 69 ALPFDF-EPENLVKLNLPYSKVVQI-WEGKKRAFKLKYVDIHNSQYLIRMP--DLSET----PNLERTNLKNCINLTC-V 139 (635)
Q Consensus 69 ~lp~~~-~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~n~~~~~~p--~l~~l----~~L~~L~L~~n~~l~~-~ 139 (635)
.+|..+ .-.+|++||++++.|+.. -..+..+++|+.|+|++|..+++.. .++.+ ++|++|+|++|..++. -
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 445543 445788888888887632 1345677788888888776443211 23333 3677777777754432 1
Q ss_pred CccccCCCCCCEEeecCCCCCC
Q 006695 140 PSSVQNFNHLSMLCFEGCKSLR 161 (635)
Q Consensus 140 ~~~i~~l~~L~~L~L~~~~~l~ 161 (635)
-..+..+++|+.|++++|..++
T Consensus 132 l~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCC
T ss_pred HHHHhcCCCCCEEECCCCCCCC
Confidence 2235566677777777665544
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.67 E-value=3.7e-05 Score=70.75 Aligned_cols=35 Identities=9% Similarity=0.098 Sum_probs=17.1
Q ss_pred CccEEEeecccccccchhcccCCCCCcEEecCCCC
Q 006695 215 NLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCS 249 (635)
Q Consensus 215 ~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~ 249 (635)
+|+.||+++|.+...--..+.++++|++|+|++|.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 45555555555433323334445555555555554
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.40 E-value=0.0029 Score=59.13 Aligned_cols=68 Identities=25% Similarity=0.234 Sum_probs=31.8
Q ss_pred hhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCc-----ccccccCCCCccEEeccCC
Q 006695 256 EILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSES-----LPASITQLSQLRSLHLKDC 328 (635)
Q Consensus 256 ~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~-----lp~~l~~l~~L~~L~L~~n 328 (635)
+.+..-+.|+.|+|++|.|.+-- ...|...+...+.|++|+|++|.++. |-..+..-+.|++|+|++|
T Consensus 64 ~aL~~N~~L~~L~L~~n~igd~g-----a~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 64 EAACNSKHIEKFSLANTAISDSE-----ARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHH-----HTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHhhCCCcCEEEccCCCCChHH-----HHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 34444455555555555554210 01122222334556666666666542 2233444455666666643
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.30 E-value=0.0062 Score=52.99 Aligned_cols=54 Identities=28% Similarity=0.465 Sum_probs=41.8
Q ss_pred CEEEecCCCcc--ccCchhcccccchhhccCCCCccEEEcCCCCCCccccc-ccCCCCccEEeccCCCC
Q 006695 265 KCISLERTAIT--ELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSM 330 (635)
Q Consensus 265 ~~L~L~~n~l~--~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~ 330 (635)
..++.+++.++ .+|..+ -++|+.|+|++|+++.||.. +..+++|+.|+|++|+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l------------p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF------------PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC------------CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCC------------CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 36777788887 787643 24688999999999888865 57888889888888765
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.08 E-value=0.0049 Score=57.56 Aligned_cols=113 Identities=18% Similarity=0.193 Sum_probs=69.3
Q ss_pred ccCCCccEEEeecc-cccc----cchhcccCCCCCcEEecCCCCCCC----cchhhhcCCCCCCEEEecCCCccccCchh
Q 006695 211 ECLTNLEKLYINRC-MRLK----RLSTSICKLKSLHVLVLDDCSKLE----RFPEILEKMESVKCISLERTAITELPSSF 281 (635)
Q Consensus 211 ~~l~~L~~L~L~~n-~~~~----~lp~~~~~l~~L~~L~Ls~n~~~~----~~~~~l~~l~~L~~L~L~~n~l~~lp~~~ 281 (635)
.+-+.|+.|+|++| .+.. .+...+..-+.|+.|+|++|.+.. .+.+.+..-+.|+.|+|++|.|+.--
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G--- 114 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL--- 114 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH---
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH---
Confidence 34466777777764 3322 234555667778888888877653 34455666778888888888877311
Q ss_pred cccccchhhccCCCCccEEEcCCC---CCC-----cccccccCCCCccEEeccCC
Q 006695 282 ANLEGLKDLYIGGSSLRQLNLSRN---DSE-----SLPASITQLSQLRSLHLKDC 328 (635)
Q Consensus 282 ~~l~~L~~l~~~~~~L~~L~Ls~n---~~~-----~lp~~l~~l~~L~~L~L~~n 328 (635)
...|-..+...+.|++|+|++| .++ .|-..+..-+.|+.|+++.|
T Consensus 115 --a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 115 --LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp --HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred --HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 1112233344567888888765 333 23334556678888888764
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.23 E-value=0.03 Score=48.55 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=31.1
Q ss_pred EeecCCCCCC--CCCCCCCCCCceEEEcCCCCCcccccc-CCCCCCCcEEEccCCCC
Q 006695 59 YLHWHEYPSK--ALPFDFEPENLVKLNLPYSKVVQIWEG-KKRAFKLKYVDIHNSQY 112 (635)
Q Consensus 59 ~L~l~~~~l~--~lp~~~~l~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~Ls~n~~ 112 (635)
.++.+++.++ .+|..+ +.+|++|+|++|+|+.++.+ +..+++|+.|+|++|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555555 666443 23566667777766666544 35566666666666653
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=24.19 E-value=1e+02 Score=24.46 Aligned_cols=46 Identities=9% Similarity=0.025 Sum_probs=27.8
Q ss_pred ccccccCc-ccccCCCccEEEeecccccccchhcccCCCCCcEEecCC
Q 006695 201 TAIQEVPS-SIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDD 247 (635)
Q Consensus 201 n~i~~lp~-~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~ 247 (635)
..++.|.. .|.++++|+.+.|-.+ ....-...|.++.+|+.+.+.+
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34555543 3677777777777652 3333345566777777777765
Done!