Query 006697
Match_columns 635
No_of_seqs 428 out of 2695
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 13:11:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006697.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006697hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1159 NADP-dependent flavopr 100.0 4E-103 8E-108 820.3 41.4 510 84-632 1-512 (574)
2 KOG1158 NADP/FAD dependent oxi 100.0 5.6E-98 1E-102 828.9 39.7 538 73-633 36-583 (645)
3 PRK10953 cysJ sulfite reductas 100.0 7.6E-94 1.7E-98 809.6 55.2 478 82-633 60-539 (600)
4 TIGR01931 cysJ sulfite reducta 100.0 4.3E-92 9.4E-97 799.0 54.7 476 83-632 58-535 (597)
5 COG0369 CysJ Sulfite reductase 100.0 3E-88 6.6E-93 753.3 43.9 479 82-633 46-526 (587)
6 cd06204 CYPOR NADPH cytochrome 100.0 1.9E-67 4.2E-72 575.3 37.9 327 291-631 2-353 (416)
7 cd06207 CyPoR_like NADPH cytoc 100.0 7.5E-66 1.6E-70 558.0 35.7 317 299-631 2-318 (382)
8 cd06203 methionine_synthase_re 100.0 2.8E-65 6.1E-70 555.6 36.0 320 299-632 2-335 (398)
9 cd06202 Nitric_oxide_synthase 100.0 8.1E-65 1.8E-69 553.1 36.9 325 299-632 2-340 (406)
10 cd06206 bifunctional_CYPOR The 100.0 2.5E-62 5.4E-67 530.8 36.1 314 298-631 1-318 (384)
11 cd06199 SiR Cytochrome p450- l 100.0 8.5E-59 1.8E-63 498.8 32.1 293 298-631 1-297 (360)
12 PRK06214 sulfite reductase; Pr 100.0 3.1E-58 6.6E-63 510.3 37.0 308 285-632 159-468 (530)
13 PF00667 FAD_binding_1: FAD bi 100.0 1.5E-49 3.3E-54 399.0 20.5 218 288-511 2-219 (219)
14 PRK09004 FMN-binding protein M 100.0 1.5E-33 3.3E-38 265.1 17.8 144 83-239 1-146 (146)
15 PRK08105 flavodoxin; Provision 100.0 3.8E-33 8.2E-38 263.3 18.1 145 83-239 1-147 (149)
16 PRK05723 flavodoxin; Provision 100.0 6.2E-33 1.3E-37 262.0 17.6 145 84-240 1-150 (151)
17 PLN03115 ferredoxin--NADP(+) r 100.0 1.7E-31 3.6E-36 285.6 21.6 216 288-632 84-309 (367)
18 cd06182 CYPOR_like NADPH cytoc 100.0 3.4E-27 7.3E-32 244.0 22.2 156 470-631 47-204 (267)
19 TIGR03224 benzo_boxA benzoyl-C 99.9 3.4E-26 7.3E-31 249.8 23.9 212 288-631 136-352 (411)
20 PF00258 Flavodoxin_1: Flavodo 99.9 4.4E-27 9.6E-32 220.1 10.9 138 88-231 1-143 (143)
21 cd06201 SiR_like2 Cytochrome p 99.9 3.8E-25 8.2E-30 231.3 24.1 135 471-631 100-235 (289)
22 PRK07308 flavodoxin; Validated 99.9 1.2E-25 2.5E-30 211.7 17.5 140 83-235 1-142 (146)
23 PLN03116 ferredoxin--NADP+ red 99.9 3.5E-25 7.6E-30 233.5 22.6 215 289-630 19-248 (307)
24 cd06208 CYPOR_like_FNR These f 99.9 1.9E-24 4.2E-29 225.8 24.2 214 289-630 3-227 (286)
25 cd06200 SiR_like1 Cytochrome p 99.9 6.3E-25 1.4E-29 224.4 15.0 159 455-631 31-192 (245)
26 PRK06703 flavodoxin; Provision 99.9 7E-24 1.5E-28 200.7 17.5 147 83-242 1-150 (151)
27 PRK12359 flavodoxin FldB; Prov 99.9 1.1E-22 2.4E-27 195.7 18.2 143 84-241 1-170 (172)
28 PRK09271 flavodoxin; Provision 99.9 5.5E-22 1.2E-26 189.7 15.6 142 84-239 1-147 (160)
29 PRK06756 flavodoxin; Provision 99.9 1.7E-21 3.6E-26 183.8 17.1 137 83-232 1-137 (148)
30 cd06189 flavin_oxioreductase N 99.9 1.5E-21 3.3E-26 196.4 13.8 156 454-630 24-184 (224)
31 PRK11921 metallo-beta-lactamas 99.9 1.3E-21 2.8E-26 213.3 12.3 186 9-238 198-392 (394)
32 cd06188 NADH_quinone_reductase 99.9 2.5E-21 5.4E-26 202.0 13.1 148 471-630 86-239 (283)
33 PRK10926 ferredoxin-NADP reduc 99.9 1.5E-21 3.4E-26 199.7 11.3 151 456-628 31-190 (248)
34 TIGR01753 flav_short flavodoxi 99.9 9.2E-21 2E-25 176.2 15.3 135 86-234 1-138 (140)
35 PRK07609 CDP-6-deoxy-delta-3,4 99.9 3E-21 6.5E-26 206.4 13.3 154 456-630 132-292 (339)
36 cd06211 phenol_2-monooxygenase 99.9 5.2E-21 1.1E-25 194.4 13.8 155 455-630 35-197 (238)
37 TIGR01752 flav_long flavodoxin 99.8 2E-20 4.3E-25 180.2 16.7 140 85-239 1-166 (167)
38 PRK08051 fre FMN reductase; Va 99.8 5.6E-21 1.2E-25 193.6 13.0 155 455-630 29-188 (232)
39 cd00322 FNR_like Ferredoxin re 99.8 5E-21 1.1E-25 191.5 12.3 145 455-620 22-169 (223)
40 KOG1160 Fe-S oxidoreductase [E 99.8 8.3E-21 1.8E-25 197.7 13.6 144 83-241 46-194 (601)
41 cd06190 T4MO_e_transfer_like T 99.8 8.4E-21 1.8E-25 191.9 13.1 157 455-630 23-189 (232)
42 cd06210 MMO_FAD_NAD_binding Me 99.8 7.8E-21 1.7E-25 192.6 12.8 155 455-630 34-194 (236)
43 PRK05464 Na(+)-translocating N 99.8 9.8E-21 2.1E-25 207.4 13.8 149 469-629 208-362 (409)
44 cd06209 BenDO_FAD_NAD Benzoate 99.8 1.3E-20 2.8E-25 190.2 13.2 153 455-630 30-187 (228)
45 PRK11872 antC anthranilate dio 99.8 1.3E-20 2.8E-25 201.7 13.5 152 456-629 137-294 (340)
46 PRK13289 bifunctional nitric o 99.8 1.2E-20 2.6E-25 206.1 13.5 140 456-617 185-330 (399)
47 TIGR01941 nqrF NADH:ubiquinone 99.8 1.4E-20 3E-25 206.0 13.7 147 470-628 205-357 (405)
48 cd06187 O2ase_reductase_like T 99.8 2E-20 4.4E-25 187.9 13.7 154 456-630 24-184 (224)
49 TIGR01754 flav_RNR ribonucleot 99.8 3.7E-20 8.1E-25 173.1 14.5 133 84-235 1-139 (140)
50 PRK08345 cytochrome-c3 hydroge 99.8 2E-20 4.4E-25 195.7 13.6 141 456-618 38-179 (289)
51 cd06212 monooxygenase_like The 99.8 3.3E-20 7.2E-25 187.7 13.8 155 455-630 29-191 (232)
52 PRK05452 anaerobic nitric oxid 99.8 3.5E-20 7.7E-25 206.0 13.4 188 10-240 203-397 (479)
53 cd06195 FNR1 Ferredoxin-NADP+ 99.8 3.5E-20 7.7E-25 188.6 12.3 151 456-628 25-185 (241)
54 PRK10684 HCP oxidoreductase, N 99.8 3.9E-20 8.5E-25 197.3 12.1 141 456-617 37-180 (332)
55 cd06213 oxygenase_e_transfer_s 99.8 1.1E-19 2.4E-24 183.3 12.9 153 456-630 28-189 (227)
56 cd06194 FNR_N-term_Iron_sulfur 99.8 1.7E-19 3.7E-24 181.2 13.9 143 455-618 23-167 (222)
57 cd06191 FNR_iron_sulfur_bindin 99.8 7.9E-20 1.7E-24 184.8 11.4 141 456-618 28-172 (231)
58 cd06221 sulfite_reductase_like 99.8 1.6E-19 3.4E-24 185.5 13.8 153 455-630 27-184 (253)
59 COG0716 FldA Flavodoxins [Ener 99.8 4.7E-19 1E-23 167.9 15.8 143 83-238 1-150 (151)
60 PRK05713 hypothetical protein; 99.8 1.5E-19 3.2E-24 191.3 12.3 139 456-615 119-259 (312)
61 cd06184 flavohem_like_fad_nad_ 99.8 2.5E-19 5.5E-24 182.9 13.0 141 456-618 37-183 (247)
62 PTZ00274 cytochrome b5 reducta 99.8 1.5E-19 3.3E-24 191.4 11.7 155 456-627 82-251 (325)
63 PRK09267 flavodoxin FldA; Vali 99.8 1.6E-18 3.4E-23 167.3 17.6 142 83-239 1-167 (169)
64 cd06215 FNR_iron_sulfur_bindin 99.8 3.6E-19 7.8E-24 179.7 12.4 150 455-625 27-185 (231)
65 cd06216 FNR_iron_sulfur_bindin 99.8 3.4E-19 7.3E-24 181.6 12.1 149 456-625 46-198 (243)
66 PRK08221 anaerobic sulfite red 99.8 5E-19 1.1E-23 182.8 12.2 147 456-629 33-184 (263)
67 COG1018 Hmp Flavodoxin reducta 99.8 9.1E-19 2E-23 180.3 13.4 136 456-614 35-174 (266)
68 cd06183 cyt_b5_reduct_like Cyt 99.8 9.4E-19 2E-23 176.7 12.4 153 455-627 28-189 (234)
69 TIGR02160 PA_CoA_Oxy5 phenylac 99.8 6.9E-19 1.5E-23 189.2 11.3 142 455-618 32-180 (352)
70 cd06214 PA_degradation_oxidore 99.8 1.2E-18 2.6E-23 177.1 11.9 142 455-618 32-179 (241)
71 TIGR02911 sulfite_red_B sulfit 99.8 1.2E-18 2.5E-23 179.8 11.9 147 456-629 31-182 (261)
72 cd06198 FNR_like_3 NAD(P) bind 99.8 1.4E-18 3.1E-23 173.8 12.2 138 455-617 22-163 (216)
73 cd06217 FNR_iron_sulfur_bindin 99.8 1.7E-18 3.6E-23 175.3 11.7 151 456-627 31-191 (235)
74 cd06218 DHOD_e_trans FAD/NAD b 99.8 2.1E-18 4.6E-23 176.3 12.1 144 456-631 25-175 (246)
75 PTZ00319 NADH-cytochrome B5 re 99.8 2.4E-18 5.3E-23 180.9 11.5 161 456-628 64-251 (300)
76 cd06196 FNR_like_1 Ferredoxin 99.8 2.4E-18 5.3E-23 172.3 10.7 135 455-618 27-165 (218)
77 cd06185 PDR_like Phthalate dio 99.7 2.1E-17 4.6E-22 164.6 13.1 147 455-629 25-172 (211)
78 COG0543 UbiB 2-polyprenylpheno 99.7 1.9E-17 4.2E-22 169.8 12.7 151 455-631 35-188 (252)
79 cd06197 FNR_like_2 FAD/NAD(P) 99.7 1.2E-17 2.6E-22 168.0 10.2 126 456-602 26-180 (220)
80 cd06220 DHOD_e_trans_like2 FAD 99.7 3.2E-17 6.9E-22 166.3 11.5 137 455-630 23-162 (233)
81 PRK00054 dihydroorotate dehydr 99.7 2.7E-17 5.8E-22 168.6 10.4 141 455-630 31-177 (250)
82 cd06192 DHOD_e_trans_like FAD/ 99.7 6.1E-17 1.3E-21 165.2 11.3 120 456-600 25-147 (243)
83 PRK06222 ferredoxin-NADP(+) re 99.7 8.8E-17 1.9E-21 167.7 10.4 143 456-630 28-174 (281)
84 cd06219 DHOD_e_trans_like1 FAD 99.7 1.3E-16 2.7E-21 163.5 10.9 144 455-630 26-173 (248)
85 COG0426 FpaA Uncharacterized f 99.7 8.5E-17 1.8E-21 170.4 9.8 164 8-217 198-366 (388)
86 PLN02252 nitrate reductase [NA 99.7 1.8E-16 3.8E-21 186.7 12.7 162 456-628 665-845 (888)
87 PRK05569 flavodoxin; Provision 99.7 1E-15 2.3E-20 143.0 14.8 115 83-214 1-117 (141)
88 PRK05802 hypothetical protein; 99.7 9E-17 2E-21 170.2 8.4 144 457-629 96-251 (320)
89 KOG0534 NADH-cytochrome b-5 re 99.7 7.2E-16 1.6E-20 158.3 13.7 153 456-628 82-242 (286)
90 PRK05568 flavodoxin; Provision 99.7 1.2E-15 2.5E-20 142.8 13.6 117 83-217 1-119 (142)
91 COG2871 NqrF Na+-transporting 99.7 3.8E-16 8.3E-21 155.8 10.4 137 470-618 210-346 (410)
92 TIGR00333 nrdI ribonucleoside- 99.7 5.4E-16 1.2E-20 141.1 10.4 92 88-206 1-93 (125)
93 PTZ00306 NADH-dependent fumara 99.6 2.1E-15 4.5E-20 184.2 11.6 153 456-627 948-1118(1167)
94 COG4097 Predicted ferric reduc 99.6 3.1E-15 6.8E-20 154.7 11.0 128 468-623 259-387 (438)
95 cd06186 NOX_Duox_like_FAD_NADP 99.6 6.9E-15 1.5E-19 146.4 10.8 128 455-599 24-162 (210)
96 PRK12778 putative bifunctional 99.5 1.5E-14 3.2E-19 170.3 10.7 143 456-630 28-174 (752)
97 PLN02631 ferric-chelate reduct 99.5 4.6E-14 1E-18 161.5 11.8 149 455-619 334-493 (699)
98 PRK03600 nrdI ribonucleotide r 99.5 3.1E-13 6.7E-18 125.0 14.4 122 84-237 1-130 (134)
99 PRK02551 flavoprotein NrdI; Pr 99.5 2.8E-13 6E-18 127.6 14.1 137 83-234 1-145 (154)
100 cd06193 siderophore_interactin 99.5 3.4E-14 7.4E-19 144.3 6.8 130 456-616 27-178 (235)
101 PRK12779 putative bifunctional 99.5 3.3E-13 7.2E-18 161.1 13.0 148 456-629 677-834 (944)
102 PRK06242 flavodoxin; Provision 99.4 9.1E-13 2E-17 124.3 11.7 108 84-215 1-109 (150)
103 PLN02844 oxidoreductase/ferric 99.4 1.1E-12 2.4E-17 151.0 13.7 163 455-629 338-513 (722)
104 PLN02292 ferric-chelate reduct 99.4 2E-12 4.4E-17 148.3 12.5 150 456-618 352-512 (702)
105 PRK12775 putative trifunctiona 99.4 1.5E-12 3.3E-17 156.7 10.6 143 456-630 28-175 (1006)
106 TIGR01755 flav_wrbA NAD(P)H:qu 99.3 3.7E-11 8.1E-16 118.9 14.8 127 84-213 1-141 (197)
107 PRK03767 NAD(P)H:quinone oxido 99.3 3.4E-11 7.3E-16 119.5 14.5 128 83-214 1-143 (200)
108 PRK11104 hemG protoporphyrinog 99.3 3.6E-11 7.7E-16 117.0 12.9 87 84-186 1-87 (177)
109 PF00175 NAD_binding_1: Oxidor 99.3 7.1E-12 1.5E-16 111.2 6.8 77 548-630 1-82 (109)
110 PRK07116 flavodoxin; Provision 99.1 8.6E-10 1.9E-14 105.5 11.9 133 83-235 2-158 (160)
111 PF12724 Flavodoxin_5: Flavodo 99.0 3E-09 6.6E-14 99.8 12.4 84 87-188 1-86 (143)
112 PF07972 Flavodoxin_NdrI: NrdI 99.0 2.3E-09 5.1E-14 97.1 9.2 115 88-231 1-120 (122)
113 COG1780 NrdI Protein involved 98.9 1.1E-08 2.4E-13 92.7 11.4 127 85-239 2-133 (141)
114 PF03358 FMN_red: NADPH-depend 98.8 4.2E-08 9.1E-13 92.6 13.4 125 84-214 1-142 (152)
115 PF12641 Flavodoxin_3: Flavodo 98.7 6.9E-08 1.5E-12 92.2 11.1 96 87-206 1-98 (160)
116 COG4635 HemG Flavodoxin [Energ 98.6 7.5E-08 1.6E-12 89.5 6.9 108 84-207 1-111 (175)
117 KOG3378 Globins and related he 98.6 2.9E-08 6.3E-13 99.3 2.9 98 455-567 180-286 (385)
118 PRK10569 NAD(P)H-dependent FMN 98.5 6.5E-06 1.4E-10 81.1 16.6 120 84-212 1-133 (191)
119 PF12682 Flavodoxin_4: Flavodo 98.4 2.3E-06 4.9E-11 81.6 11.4 132 85-235 1-156 (156)
120 TIGR03567 FMN_reduc_SsuE FMN r 98.3 1.9E-05 4.2E-10 76.4 14.7 119 85-212 1-132 (171)
121 PRK00170 azoreductase; Reviewe 98.2 5.6E-05 1.2E-09 74.7 17.2 157 83-241 1-197 (201)
122 PF00970 FAD_binding_6: Oxidor 98.2 3.7E-07 8E-12 79.8 1.0 67 455-537 29-98 (99)
123 PRK09739 hypothetical protein; 98.2 7.8E-05 1.7E-09 73.9 16.2 157 83-242 3-197 (199)
124 TIGR03566 FMN_reduc_MsuE FMN r 98.1 5.7E-05 1.2E-09 73.2 14.3 120 85-212 1-135 (174)
125 PRK01355 azoreductase; Reviewe 98.1 0.00015 3.2E-09 72.0 17.0 158 83-241 1-194 (199)
126 PRK06934 flavodoxin; Provision 98.1 4.2E-05 9E-10 76.7 12.3 125 93-235 69-217 (221)
127 PRK06567 putative bifunctional 98.0 9.4E-06 2E-10 96.1 8.1 83 456-558 819-908 (1028)
128 PF02525 Flavodoxin_2: Flavodo 98.0 0.00021 4.5E-09 70.7 16.2 152 84-239 1-199 (199)
129 PRK13556 azoreductase; Provisi 98.0 0.00048 1E-08 68.8 17.7 157 83-241 1-203 (208)
130 PF08030 NAD_binding_6: Ferric 97.8 3.6E-05 7.8E-10 72.7 5.5 74 545-618 3-79 (156)
131 COG0655 WrbA Multimeric flavod 97.8 0.00031 6.7E-09 70.1 12.4 123 85-212 5-148 (207)
132 KOG0039 Ferric reductase, NADH 97.7 7.3E-05 1.6E-09 86.7 8.7 134 455-601 381-536 (646)
133 TIGR02690 resist_ArsH arsenica 97.5 0.0073 1.6E-07 60.8 17.4 126 83-213 26-162 (219)
134 PRK13555 azoreductase; Provisi 97.1 0.036 7.9E-07 55.4 17.8 128 83-211 1-174 (208)
135 PRK04930 glutathione-regulated 97.1 0.047 1E-06 53.5 17.7 158 81-242 3-178 (184)
136 KOG3135 1,4-benzoquinone reduc 96.7 0.022 4.8E-07 53.9 11.1 129 84-219 2-147 (203)
137 COG0431 Predicted flavoprotein 95.8 0.1 2.3E-06 51.0 11.4 122 84-214 1-136 (184)
138 PRK00871 glutathione-regulated 95.4 0.41 8.9E-06 46.6 14.0 152 86-241 2-169 (176)
139 COG2249 MdaB Putative NADPH-qu 93.7 1.4 3.1E-05 43.3 13.2 156 84-242 1-187 (189)
140 COG2375 ViuB Siderophore-inter 92.4 0.5 1.1E-05 48.7 8.1 84 467-566 83-166 (265)
141 PRK02261 methylaspartate mutas 90.6 6.1 0.00013 36.8 12.7 128 85-236 3-134 (137)
142 KOG0560 Sulfite reductase (fer 87.7 0.22 4.7E-06 54.5 1.0 61 182-242 1-69 (638)
143 PF08021 FAD_binding_9: Sidero 87.3 0.38 8.2E-06 43.6 2.2 55 467-536 63-117 (117)
144 TIGR01501 MthylAspMutase methy 87.3 10 0.00023 35.2 11.7 127 87-234 3-130 (134)
145 PF08022 FAD_binding_8: FAD-bi 86.3 0.12 2.7E-06 45.7 -1.6 78 444-534 16-102 (105)
146 cd02072 Glm_B12_BD B12 binding 84.9 9.2 0.0002 35.3 9.9 114 88-216 2-116 (128)
147 PRK05907 hypothetical protein; 66.6 1.2E+02 0.0027 32.2 13.7 132 77-239 12-150 (311)
148 PF06283 ThuA: Trehalose utili 63.8 26 0.00056 34.9 7.6 75 85-167 1-80 (217)
149 TIGR02667 moaB_proteo molybden 62.9 9 0.0002 36.7 3.9 57 175-231 2-58 (163)
150 cd06533 Glyco_transf_WecG_TagA 62.4 29 0.00063 33.4 7.4 115 74-210 37-155 (171)
151 TIGR00640 acid_CoA_mut_C methy 62.1 65 0.0014 29.7 9.3 111 86-216 3-113 (132)
152 COG1587 HemD Uroporphyrinogen- 61.8 32 0.00069 35.1 8.0 93 99-216 11-105 (248)
153 COG1182 AcpD Acyl carrier prot 60.9 1.8E+02 0.004 29.0 16.5 128 83-211 1-171 (202)
154 cd05009 SIS_GlmS_GlmD_2 SIS (S 58.9 40 0.00088 30.9 7.6 82 75-167 6-87 (153)
155 PRK05752 uroporphyrinogen-III 57.9 44 0.00095 34.2 8.3 90 99-214 13-107 (255)
156 cd00578 L-fuc_L-ara-isomerases 57.0 96 0.0021 34.7 11.4 128 85-233 2-150 (452)
157 PRK09622 porA pyruvate flavodo 56.1 95 0.002 34.4 11.0 109 83-202 268-382 (407)
158 PF03808 Glyco_tran_WecB: Glyc 56.0 70 0.0015 30.8 8.8 109 80-209 45-156 (172)
159 cd05566 PTS_IIB_galactitol PTS 53.5 38 0.00082 28.5 5.8 34 84-119 1-34 (89)
160 KOG1160 Fe-S oxidoreductase [E 52.7 16 0.00035 40.1 4.1 125 83-214 357-487 (601)
161 PF00970 FAD_binding_6: Oxidor 52.2 43 0.00094 28.5 6.1 38 297-339 2-41 (99)
162 PRK14194 bifunctional 5,10-met 52.0 3.2E+02 0.0069 29.0 13.6 118 83-212 33-187 (301)
163 KOG4530 Predicted flavoprotein 50.3 1.7E+02 0.0037 28.1 9.8 42 136-184 84-125 (199)
164 PRK05928 hemD uroporphyrinogen 49.5 81 0.0017 31.4 8.6 87 101-212 13-103 (249)
165 PRK08811 uroporphyrinogen-III 48.4 92 0.002 32.3 8.9 97 83-213 18-118 (266)
166 cd02067 B12-binding B12 bindin 46.2 2.1E+02 0.0045 25.2 10.6 108 88-216 2-110 (119)
167 PF09651 Cas_APE2256: CRISPR-a 46.2 38 0.00082 31.4 5.0 41 86-128 24-64 (136)
168 cd07363 45_DOPA_Dioxygenase Th 43.9 71 0.0015 32.8 7.1 83 97-190 79-163 (253)
169 PRK09548 PTS system ascorbate- 43.3 48 0.001 38.4 6.2 42 82-125 505-548 (602)
170 cd06212 monooxygenase_like The 43.3 49 0.0011 33.0 5.8 41 295-340 1-42 (232)
171 cd06578 HemD Uroporphyrinogen- 42.9 95 0.0021 30.5 7.8 89 101-214 10-102 (239)
172 cd00758 MoCF_BD MoCF_BD: molyb 41.8 25 0.00053 32.3 3.0 53 179-231 1-55 (133)
173 cd03142 GATase1_ThuA Type 1 gl 41.6 1.1E+02 0.0024 30.8 7.9 63 100-167 24-87 (215)
174 cd06200 SiR_like1 Cytochrome p 41.3 47 0.001 33.7 5.4 39 302-340 5-44 (245)
175 COG0429 Predicted hydrolase of 41.2 1.2E+02 0.0026 32.6 8.3 98 84-211 76-173 (345)
176 PF13433 Peripla_BP_5: Peripla 40.4 1.2E+02 0.0027 32.9 8.5 103 83-215 66-169 (363)
177 PRK09212 pyruvate dehydrogenas 39.8 71 0.0015 34.2 6.6 78 81-167 200-278 (327)
178 PRK10310 PTS system galactitol 39.4 57 0.0012 28.2 4.8 36 84-121 3-38 (94)
179 COG1587 HemD Uroporphyrinogen- 38.7 1.9E+02 0.0041 29.4 9.3 100 83-213 123-227 (248)
180 PRK07168 bifunctional uroporph 38.3 1E+02 0.0022 35.0 7.7 89 98-211 260-351 (474)
181 PRK09189 uroporphyrinogen-III 38.2 93 0.002 31.3 7.0 85 101-213 12-98 (240)
182 PF06144 DNA_pol3_delta: DNA p 36.8 3.4E+02 0.0075 25.2 10.3 131 87-238 1-139 (172)
183 cd07371 2A5CPDO_AB The alpha a 36.8 1.3E+02 0.0028 31.2 7.8 104 97-207 86-205 (268)
184 cd05567 PTS_IIB_mannitol PTS_I 36.4 90 0.0019 26.3 5.5 40 84-125 1-42 (87)
185 PRK14188 bifunctional 5,10-met 35.1 5.7E+02 0.012 27.1 14.5 118 83-212 32-186 (296)
186 PRK08366 vorA 2-ketoisovalerat 34.9 2.7E+02 0.0059 30.6 10.3 110 83-202 260-372 (390)
187 PRK10427 putative PTS system f 33.9 1.4E+02 0.003 27.0 6.4 55 84-146 3-65 (114)
188 PRK14190 bifunctional 5,10-met 33.9 5.9E+02 0.013 26.8 12.9 118 83-212 32-186 (284)
189 PRK14186 bifunctional 5,10-met 33.9 5.8E+02 0.013 27.0 12.1 117 83-211 32-185 (297)
190 COG1810 Uncharacterized protei 33.5 5.2E+02 0.011 26.2 11.0 125 83-238 1-132 (224)
191 cd06578 HemD Uroporphyrinogen- 33.0 1.9E+02 0.0041 28.3 8.2 101 84-214 121-226 (239)
192 PF02302 PTS_IIB: PTS system, 33.0 93 0.002 25.9 5.1 37 85-123 1-37 (90)
193 TIGR00853 pts-lac PTS system, 32.9 62 0.0013 28.1 3.9 35 83-120 3-37 (95)
194 COG2185 Sbm Methylmalonyl-CoA 32.6 3.2E+02 0.007 25.7 8.8 111 83-216 12-123 (143)
195 cd06393 PBP1_iGluR_Kainate_Glu 32.5 2.3E+02 0.0049 30.6 9.3 91 82-188 138-229 (384)
196 PRK09590 celB cellobiose phosp 32.5 67 0.0015 28.4 4.2 35 83-120 1-35 (104)
197 TIGR00177 molyb_syn molybdenum 32.2 38 0.00083 31.5 2.7 53 179-231 2-63 (144)
198 cd05563 PTS_IIB_ascorbate PTS_ 31.8 1E+02 0.0022 25.6 5.1 27 85-111 1-27 (86)
199 cd00886 MogA_MoaB MogA_MoaB fa 31.4 56 0.0012 30.7 3.7 54 178-231 1-56 (152)
200 cd06214 PA_degradation_oxidore 31.1 64 0.0014 32.3 4.4 41 295-340 2-45 (241)
201 cd02071 MM_CoA_mut_B12_BD meth 30.8 3.9E+02 0.0085 23.9 9.8 108 88-217 2-111 (122)
202 PRK07452 DNA polymerase III su 30.5 3.9E+02 0.0084 28.1 10.5 135 84-236 1-143 (326)
203 cd06196 FNR_like_1 Ferredoxin 30.5 92 0.002 30.6 5.3 40 296-341 2-41 (218)
204 cd06386 PBP1_NPR_C_like Ligand 30.3 2.5E+02 0.0053 30.5 9.1 91 82-186 136-230 (387)
205 cd00133 PTS_IIB PTS_IIB: subun 30.2 98 0.0021 24.7 4.7 30 85-116 1-30 (84)
206 cd01075 NAD_bind_Leu_Phe_Val_D 30.2 68 0.0015 31.7 4.3 31 174-212 25-55 (200)
207 PF09314 DUF1972: Domain of un 30.0 5.4E+02 0.012 25.2 13.5 117 84-214 2-124 (185)
208 cd06352 PBP1_NPR_GC_like Ligan 29.8 3.8E+02 0.0083 28.6 10.5 91 82-185 136-229 (389)
209 cd06209 BenDO_FAD_NAD Benzoate 29.6 1.2E+02 0.0026 30.1 6.0 41 295-340 2-43 (228)
210 PRK14315 glmM phosphoglucosami 29.5 2.9E+02 0.0062 30.9 9.6 62 84-150 43-104 (448)
211 PRK14180 bifunctional 5,10-met 29.4 6.9E+02 0.015 26.3 13.4 118 83-212 31-186 (282)
212 cd05568 PTS_IIB_bgl_like PTS_I 29.2 38 0.00082 27.9 2.0 28 84-111 1-28 (85)
213 PRK08367 porA pyruvate ferredo 28.9 4.2E+02 0.0091 29.2 10.5 107 83-199 262-371 (394)
214 PRK00054 dihydroorotate dehydr 28.6 1.3E+02 0.0029 30.5 6.2 42 294-341 4-45 (250)
215 PTZ00182 3-methyl-2-oxobutanat 28.6 95 0.0021 33.7 5.4 78 81-167 232-310 (355)
216 PRK12571 1-deoxy-D-xylulose-5- 28.3 1.8E+02 0.004 34.2 8.0 58 82-145 504-561 (641)
217 PF04908 SH3BGR: SH3-binding, 27.8 1.4E+02 0.003 26.3 5.3 39 84-124 1-41 (99)
218 cd06217 FNR_iron_sulfur_bindin 27.8 1.3E+02 0.0027 29.9 5.8 40 296-340 3-43 (235)
219 cd06211 phenol_2-monooxygenase 27.5 1.4E+02 0.003 29.9 6.1 42 294-340 6-48 (238)
220 PF08357 SEFIR: SEFIR domain; 27.3 1.6E+02 0.0034 27.2 6.1 62 84-147 1-67 (150)
221 PRK14192 bifunctional 5,10-met 27.2 7.4E+02 0.016 25.9 13.8 48 154-211 139-186 (283)
222 PRK14179 bifunctional 5,10-met 27.2 7.6E+02 0.016 26.0 12.7 119 83-213 32-187 (284)
223 PF04392 ABC_sub_bind: ABC tra 27.1 2.1E+02 0.0045 29.8 7.5 42 82-125 130-171 (294)
224 cd07373 2A5CPDO_A The alpha su 27.1 1.6E+02 0.0035 30.5 6.6 86 96-190 88-179 (271)
225 cd06216 FNR_iron_sulfur_bindin 27.0 59 0.0013 32.7 3.3 41 295-340 18-58 (243)
226 TIGR01917 gly_red_sel_B glycin 26.8 4.4E+02 0.0096 29.3 9.9 104 88-242 307-420 (431)
227 cd06355 PBP1_FmdD_like Peripla 26.8 6.5E+02 0.014 26.5 11.5 48 158-214 120-167 (348)
228 PF13380 CoA_binding_2: CoA bi 26.5 1.4E+02 0.003 26.8 5.2 97 96-217 11-111 (116)
229 cd06388 PBP1_iGluR_AMPA_GluR4 26.3 3.3E+02 0.0072 29.4 9.2 79 82-169 123-202 (371)
230 cd03030 GRX_SH3BGR Glutaredoxi 25.5 1.7E+02 0.0037 25.2 5.3 37 86-124 2-40 (92)
231 PRK14187 bifunctional 5,10-met 25.1 8.4E+02 0.018 25.8 13.6 118 83-212 32-188 (294)
232 cd06389 PBP1_iGluR_AMPA_GluR2 25.0 3.7E+02 0.0079 29.0 9.2 89 82-184 117-211 (370)
233 PF02900 LigB: Catalytic LigB 24.9 2.6E+02 0.0057 28.7 7.8 104 96-207 94-211 (272)
234 smart00852 MoCF_biosynth Proba 24.8 55 0.0012 29.9 2.4 51 182-232 2-55 (135)
235 PRK14182 bifunctional 5,10-met 24.8 8.3E+02 0.018 25.7 12.5 118 83-212 30-185 (282)
236 COG3414 SgaB Phosphotransferas 24.4 2.4E+02 0.0052 24.5 6.0 42 83-126 1-44 (93)
237 TIGR00696 wecB_tagA_cpsF bacte 24.3 2.4E+02 0.0053 27.3 6.9 34 82-120 47-80 (177)
238 PF02780 Transketolase_C: Tran 24.0 67 0.0015 28.8 2.7 59 81-145 8-67 (124)
239 PLN02234 1-deoxy-D-xylulose-5- 24.0 2.7E+02 0.0059 32.8 8.3 78 81-168 543-621 (641)
240 PRK08105 flavodoxin; Provision 23.8 4.7E+02 0.01 24.4 8.6 98 140-242 3-114 (149)
241 cd06184 flavohem_like_fad_nad_ 23.7 2.1E+02 0.0045 28.7 6.6 42 295-341 7-50 (247)
242 PRK10684 HCP oxidoreductase, N 23.5 1.7E+02 0.0036 31.2 6.1 45 291-341 6-50 (332)
243 PF01866 Diphthamide_syn: Puta 23.2 1.9E+02 0.0042 30.5 6.5 59 82-145 208-267 (307)
244 CHL00144 odpB pyruvate dehydro 23.2 1.3E+02 0.0028 32.3 5.1 95 81-187 200-295 (327)
245 PTZ00110 helicase; Provisional 23.2 8.3E+02 0.018 28.0 12.1 112 82-208 376-500 (545)
246 PF13439 Glyco_transf_4: Glyco 23.1 1.1E+02 0.0024 27.8 4.1 38 86-125 3-40 (177)
247 PRK14189 bifunctional 5,10-met 23.0 9E+02 0.02 25.5 15.1 119 83-213 32-187 (285)
248 KOG4132 Uroporphyrinogen III s 23.0 2E+02 0.0044 29.2 6.0 16 91-106 111-126 (260)
249 cd01536 PBP1_ABC_sugar_binding 22.9 7.1E+02 0.015 24.2 12.9 37 86-124 2-39 (267)
250 PRK07119 2-ketoisovalerate fer 22.9 1.9E+02 0.0041 31.4 6.4 60 83-148 247-307 (352)
251 TIGR02298 HpaD_Fe 3,4-dihydrox 22.9 5.6E+02 0.012 26.8 9.7 87 97-190 95-185 (282)
252 PF13607 Succ_CoA_lig: Succiny 22.8 5.5E+02 0.012 23.8 8.6 107 88-213 4-126 (138)
253 PF00994 MoCF_biosynth: Probab 22.7 43 0.00092 31.0 1.2 52 181-232 1-54 (144)
254 PRK13608 diacylglycerol glucos 22.7 1.3E+02 0.0029 32.6 5.3 42 82-123 4-46 (391)
255 PLN02582 1-deoxy-D-xylulose-5- 22.5 4.5E+02 0.0097 31.3 9.7 92 82-186 543-635 (677)
256 cd05564 PTS_IIB_chitobiose_lic 22.4 1.1E+02 0.0025 26.3 3.7 86 85-194 1-86 (96)
257 cd01391 Periplasmic_Binding_Pr 22.4 6.3E+02 0.014 24.1 9.7 30 82-111 123-152 (269)
258 PRK15083 PTS system mannitol-s 22.1 1.4E+02 0.0031 35.0 5.7 38 83-122 378-416 (639)
259 PRK13609 diacylglycerol glucos 22.1 1.4E+02 0.003 32.1 5.2 33 82-116 3-35 (380)
260 PRK14170 bifunctional 5,10-met 21.6 9.6E+02 0.021 25.3 12.3 118 83-212 31-185 (284)
261 cd06356 PBP1_Amide_Urea_BP_lik 21.5 9.3E+02 0.02 25.1 12.4 48 157-214 119-166 (334)
262 cd07367 CarBb CarBb is the B s 21.5 4.4E+02 0.0095 27.3 8.5 89 97-190 89-183 (268)
263 PRK14177 bifunctional 5,10-met 21.5 9.7E+02 0.021 25.2 13.4 117 84-212 34-187 (284)
264 cd06189 flavin_oxioreductase N 21.3 1.6E+02 0.0034 29.2 5.0 38 298-341 2-39 (224)
265 PF02826 2-Hacid_dh_C: D-isome 21.3 1.4E+02 0.0029 28.8 4.4 33 173-213 32-64 (178)
266 PRK04148 hypothetical protein; 21.1 2E+02 0.0044 26.7 5.3 41 160-212 3-43 (134)
267 PRK02290 3-dehydroquinate synt 21.1 1.2E+02 0.0026 32.6 4.3 63 467-552 218-285 (344)
268 cd06213 oxygenase_e_transfer_s 20.9 2E+02 0.0043 28.5 5.7 39 296-340 2-40 (227)
269 cd07364 PCA_45_Dioxygenase_B S 20.5 4.5E+02 0.0097 27.5 8.4 88 97-190 97-193 (277)
270 PRK12315 1-deoxy-D-xylulose-5- 20.4 5.4E+02 0.012 29.9 9.8 91 81-187 459-550 (581)
271 PF02875 Mur_ligase_C: Mur lig 20.4 1.2E+02 0.0026 25.4 3.5 48 154-210 23-74 (91)
272 cd07370 HPCD The Class III ext 20.2 5.3E+02 0.012 26.8 8.9 89 93-190 90-182 (280)
273 cd02953 DsbDgamma DsbD gamma f 20.0 5.4E+02 0.012 21.7 9.7 74 80-155 8-87 (104)
274 PRK06975 bifunctional uroporph 20.0 3.2E+02 0.007 32.3 8.0 82 101-210 15-101 (656)
No 1
>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]
Probab=100.00 E-value=3.8e-103 Score=820.33 Aligned_cols=510 Identities=33% Similarity=0.555 Sum_probs=445.9
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHHH
Q 006697 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (635)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~~ 163 (635)
++|+|+||||||||+++|+.|.+++.++ +..+.|+.|++||.++ |.+..+|||+|||+|+|++|+||..||.
T Consensus 1 ~~i~ILYGSqTGtA~dvAe~l~Re~~r~--~~~~~V~s~Deyd~~~------ll~~~~vvFVcSTTGqGe~P~Nmk~~Wr 72 (574)
T KOG1159|consen 1 MKILILYGSQTGTAQDVAESLGREAHRR--GLQCLVMSMDEYDVEK------LLDERLVVFVCSTTGQGEEPDNMKKFWR 72 (574)
T ss_pred CceEEEeecCcccHHHHHHHHHHHHHhc--cCCceEeeccccCHhH------hccCceEEEEEecCCCCCCCccHHHHHH
Confidence 5799999999999999999999999998 8889999999999988 8999999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecceeecCCC--CchHHHHHHHHHHHHHHHH
Q 006697 164 WFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPELDQ 241 (635)
Q Consensus 164 ~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~--~~e~~f~~W~~~l~~~L~~ 241 (635)
+|...+.+..+|++++|||||||||+|+.||.++|+++++|.+|||+.++++|+|||++ +++.+|..|+..+|..|..
T Consensus 73 fL~rknLps~~L~~~~~AvlGLGDSsY~KfNy~aKKL~~RL~qLGA~~~~~~glgDdQh~~G~eg~~~pW~~~lw~~L~~ 152 (574)
T KOG1159|consen 73 FLLRKNLPSTILQHMQFAVLGLGDSSYPKFNYAAKKLHRRLRQLGANSVCPRGLGDDQHEEGIEGVFDPWLKELWSYLKG 152 (574)
T ss_pred HHhhccchHHHHhhhhheeeecCcccchhhhHHHHHHHHHHHHhCcccccccccccccccccchhhhHHHHHHHHHHHHh
Confidence 99887777788999999999999999999999999999999999999999999999998 8999999999999999998
Q ss_pred hhcCCCCCCCCCCCCcccCCceEEEEcCCcccccCCCCCCCCCCCCCCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEe
Q 006697 242 LLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDV 321 (635)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~V~~~~~L~~~~~~r~~~hie~di 321 (635)
.......... ..|.......|++..+... ....++.. +..+ ..+-| ++++.|++||+.++++.++|++|++
T Consensus 153 i~~p~~~~t~-l~~~~~~~~k~~~l~~~~~-~~~~d~~~-v~~~----~~~~~--~k~~~N~rlT~~~HfQDVR~~~F~i 223 (574)
T KOG1159|consen 153 IYPPYRPETD-LIPTVQITTKYSLLELGKA-SDFSDSDI-VLEP----QGQIP--AKLVENRRLTSADHFQDVRLFEFDI 223 (574)
T ss_pred hcCCCCCccc-CCCcccccchhhhhhcccc-ccCCcchh-hhcc----ccccc--cchhcceeecCcchhheeeEEEEec
Confidence 7751111000 0111222333333322111 11101000 0000 11222 8999999999999999999999999
Q ss_pred cCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeCCCCCCCCCCCCCCCCCCcccHHHHHhhhhccCCccc
Q 006697 322 SGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPR 401 (635)
Q Consensus 322 ~~~~l~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~pfp~p~tl~~~l~~~~Dl~~~p~ 401 (635)
.++.+.|+|||.+.|+|.|+.+.|++|+..+||++++...+....++.. +..+-+|+|+|+++++.+|+|+++.|+
T Consensus 224 ~~s~~~~epGDvl~l~P~N~de~V~~Fie~~gl~~~~~~~l~~~s~~~~----~~~~~~~~p~sl~~~lk~~~D~~SvPr 299 (574)
T KOG1159|consen 224 PDSYEEFEPGDVLSLLPSNSDETVQRFIEYLGLDEDQLKPLKISSNDRS----SPLPLLPNPLSLLNLLKYVLDFNSVPR 299 (574)
T ss_pred CCccccccCCCEEEEecCCchHHHHHHHHHcCCChhhccccccccCccc----ccccccCCchhHHHHHHHhcccccCcc
Confidence 9999999999999999999999999999999999987766666555332 122258999999999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHhhccCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChhhHHHHhcCCCCccccccCCCCC
Q 006697 402 KAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPR 481 (635)
Q Consensus 402 ~~~l~~La~~~~d~~~k~~L~~l~s~~~~~~y~~~i~~~~~sl~dvl~~f~s~~~p~~~ll~~~~p~l~pR~YSIsSsp~ 481 (635)
+.||..|+.|++|+.|||+|++++|++|.++|.+|+.+++||++|||++|++.+.|++.+++++ |.++||+|||||+|.
T Consensus 300 rsFFe~l~~~s~~~~EkEkL~efas~qg~ddl~dY~nRpRRtilEvLeDF~sv~lp~~yl~d~~-P~IrPR~fSIas~~~ 378 (574)
T KOG1159|consen 300 RSFFEMLAHFSTDEMEKEKLQEFASAQGIDDLYDYVNRPRRTILEVLEDFRSVKLPIDYLLDLL-PVIRPRAFSIASSPG 378 (574)
T ss_pred hHHHHHHHHHccChHHHHHHHHhccccchHHHHHHhcchhhhHHHHHHhchhccCCHHHHHHhc-cccccceeeeccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999997
Q ss_pred CCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEeeCCCCcCCCCCCCcEEEEecCCCchhHHHH
Q 006697 482 FAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGF 561 (635)
Q Consensus 482 ~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~g~F~lp~~~~~piImIg~GTGIAPfrs~ 561 (635)
. .+++++|++|+|.+.-.+.|.|+||+||++|++| +.|++.+++|++.+|.+.++|+||||||||||||||+
T Consensus 379 ~--~~leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g------~~i~~~v~~g~l~~p~~~~~PlImVGPGTGvAPfRa~ 450 (574)
T KOG1159|consen 379 A--HHLELLVAIVEYKTILKEPRRGLCSNWLASLKPG------DEIPIKVRPGTLYFPSDLNKPLIMVGPGTGVAPFRAL 450 (574)
T ss_pred C--CceeEEEEEEEEeeeccccccchhHHHHhhcCCC------CeEEEEEecCccccCCCCCCCeEEEcCCCCcccHHHH
Confidence 5 3499999999999998889999999999999999 8999999999999999889999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEEecCCCCcccchhHHhcccc
Q 006697 562 LQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKVS 632 (635)
Q Consensus 562 lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~SR~~~~k~yVQd~l~~~~~ 632 (635)
+++|..+ ...+..||||||++++||+|++||.++.+.+ ++.|||||+++|+||||+|+++++
T Consensus 451 i~er~~q-----~~~~~~lFfGCR~K~~Df~y~~eW~~~~~~~----~~~AFSRDqe~kvYVQh~i~e~g~ 512 (574)
T KOG1159|consen 451 IQERIYQ-----GDKENVLFFGCRNKDKDFLYEDEWTELNKRA----FHTAFSRDQEQKVYVQHKIRENGE 512 (574)
T ss_pred HHHHHhh-----ccCCceEEEecccCCccccccchhhhhhcch----hhhhcccccccceeHHHHHHHhhH
Confidence 9999973 2345699999999999999999999988765 455999999999999999999875
No 2
>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=5.6e-98 Score=828.95 Aligned_cols=538 Identities=44% Similarity=0.740 Sum_probs=460.2
Q ss_pred cchHHHHhcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhh-ccCCeEEEEEecCCC
Q 006697 73 EDDEADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKL-KKETLAFFMVATYGD 151 (635)
Q Consensus 73 ~~~~~~~~~~~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l-~~~~~vif~~sTyg~ 151 (635)
.....++...+.+++|+|+|||||+|.+|.++.+.+ .+|. .+.+.+.||+.-. + ...++++|+.+|||+
T Consensus 36 ~~~~~~~~~~~~~~~v~~~s~tgtae~~a~~l~~~~-~~~~---~~~~~~~d~~~~~------l~~~~~l~~~~~at~g~ 105 (645)
T KOG1158|consen 36 YSLKLKVKAKRVKATVLYGSQTGTAEDFAKRLSEIF-ARFE---LKVLKVADYDLYA------LEDHEKLLVVVLATYGE 105 (645)
T ss_pred hhHHHHhhccceeEEEEeccCCCCHHHHHHHHHHHh-hhcc---ccceeecchhhcc------cccccceeeeeeehhcC
Confidence 356666777899999999999999999999999999 7766 6666666665444 3 456899999999999
Q ss_pred CCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecceeecCCCCchHHHHHH
Q 006697 152 GEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 231 (635)
Q Consensus 152 G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~~~e~~f~~W 231 (635)
|+||+|+..|++|+.+.... ....++|+|||+||++|++||++++.+|++|+++|++|+..+|+|||+.+.+++|..|
T Consensus 106 gd~~dn~~~f~~~l~~~~~~--~~~~~~~~vFglg~~~y~~f~~~a~~~d~~l~~lg~~rl~~~glgdd~~~~e~~f~~w 183 (645)
T KOG1158|consen 106 GDPPDNAEAFYQSLTELKVL--PSSLLRYAVFGLGNSTYEHFNAFAKLVDNLLEELGANRLFQLGLGDDDAGLEEDFRTW 183 (645)
T ss_pred CCCCccHHHHHHHHhhccCc--hhhhhhHHHhhccccchhhhHHHHHHHHHHHHHhhhhhhhccccccccccchhHHHHH
Confidence 99999999999999886433 2445899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCcccCCceEEEEcCCcccccCCCCCCC--CCCCCCCCCCCCeeEEEEEeEEecCCC
Q 006697 232 RELVWPELDQLLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNM--PNGNASFDIHHPCRVNVAVRRELHKPD 309 (635)
Q Consensus 232 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~a~V~~~~~L~~~~ 309 (635)
++.+|+++++.+..+... . .+.......+.....+............. .+...+++.++||.+.++.++.|..+.
T Consensus 184 ~~~~~~~~~~~f~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (645)
T KOG1158|consen 184 KKPLLPELCETFSLEEDE-A--TKEDETIRQYRTWTPNDPPFVPQAFPPELLNLLSSTPFDKVFPFPALVVVNLALSTPS 260 (645)
T ss_pred HHHHhHhhhheeeecccc-c--cCCcccccccccCcCccccccccccCccccccccCCcchhcccchhhhhHHhhccCCC
Confidence 999999999977654332 1 11111111121111100000000000011 113367899999999999999999888
Q ss_pred CCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeCCCCCC-CCCCCCCCCCCCcccHHH
Q 006697 310 SDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGT-PRGSSLTPPFPGPCTLRT 388 (635)
Q Consensus 310 ~~r~~~hie~di~~~~l~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~-~~~~~~~~pfp~p~tl~~ 388 (635)
+.|+|+|+++++.+++++|+||||++|+|.|+.+.|++++++|+++++..+.++....+.+ +.....+.|||.|||+++
T Consensus 261 ~~r~~~~~e~~~~~~~~~Y~~GD~~gv~p~N~~~~V~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~~~ 340 (645)
T KOG1158|consen 261 SDRSCIHLELDIYGPGLRYEPGDHFGVLPPNSDELVDELLERLGLNPDTDFSLQLELETDTNPTPAKKPHPFPLPTTLRT 340 (645)
T ss_pred CceEEEEEEeecCCcccccccCCeeeecCCCCHHHHHHHHHHhcCCCccceEEEEeecCCCCCCccccCCCCCCCCcHHH
Confidence 8899999999999999999999999999999999999999999999876665555444322 333457889999999999
Q ss_pred HHhhhhccCCcccHHHHHHHHHhCCCHHHHHHHhhccCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChhhHHHHhcCC
Q 006697 389 ALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPH 468 (635)
Q Consensus 389 ~l~~~~Dl~~~p~~~~l~~La~~~~d~~~k~~L~~l~s~~~~~~y~~~i~~~~~sl~dvl~~f~s~~~p~~~ll~~~~p~ 468 (635)
+|+||+||+++|+|++|+.||+||+|+.||++|+.|+|.+|+.+|.+|+....+|++|||.+||+++||+.++++++ |+
T Consensus 341 ~l~~~ldi~~~P~k~ll~~La~~a~d~~Eke~L~~L~s~~g~~~y~~~~~~~~~tl~dVl~~fps~kpP~~~ll~~l-p~ 419 (645)
T KOG1158|consen 341 ALTHYLDITGPPKKQLLRLLAEYATDPAEKERLEILSSKQGAEEYPRWVRQSCLTLLDVLEAFPSCKPPLPHLLELL-PR 419 (645)
T ss_pred HHHHhccccCCCcHHHHHHHHHhcCCchHHHHHHHHhCccchhhHhHHHhcccccHHHHHhhCCCCCCCHHHHHHhC-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CCccccccCCCCCCCCCeEEEEEEEEEecCCCC-CcccCccchHHhhcCCCCCCCCccEEE--EEeeCCCCcCCCCCCCc
Q 006697 469 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG-RIHKGVCSTWMKNAIPLEGNGDCSWAP--IFIRPSNFKLPANPSVP 545 (635)
Q Consensus 469 l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g-~~~~G~~S~~L~~l~~g~~~~~~~~v~--i~~~~g~F~lp~~~~~p 545 (635)
++||+|||||||..+++.+|+++.++.+++++| +.|.|+||+||+++++| +.++ +.+..+.|+||.|+++|
T Consensus 420 L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~------~~~~~~~~~~~s~frlp~dp~~P 493 (645)
T KOG1158|consen 420 LQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPG------EKVPNPVPVGKSMFRLPSDPSTP 493 (645)
T ss_pred ccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCc------cccCcceeecccceecCCCCCCc
Confidence 999999999999999999999999999999986 77889999999999999 5666 77778899999999999
Q ss_pred EEEEecCCCchhHHHHHHHHHHHHhcCC--CCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEEecCC-CCccc
Q 006697 546 IIMVGPGTGLAPFRGFLQERMALKQDGA--QLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREG-SQKEY 622 (635)
Q Consensus 546 iImIg~GTGIAPfrs~lq~r~~~~~~g~--~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~SR~~-~~k~y 622 (635)
|||||+||||||||||+|+|..++++|. ..+ +|||||||+++.||||++||+++.+.+.++++.+||||++ ++|.|
T Consensus 494 iIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~-~~Lf~GcR~~~~d~LY~eE~~~~~~~~~l~~l~~A~SReq~~~k~Y 572 (645)
T KOG1158|consen 494 IIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGG-MWLFFGCRNSDEDYLYREEWEEYKKAGILTRLDVAFSREQTPKKIY 572 (645)
T ss_pred EEEEcCCCcchhhHHHHHHHHHhhhcCccCCcc-eEEEEeCCCchHHHHHHHHHHHHHhcCcchhheeeeeccCCCCcee
Confidence 9999999999999999999999877652 234 8999999999999999999999999999999999999999 78999
Q ss_pred chhHHhccccc
Q 006697 623 VQHKMMDKVSC 633 (635)
Q Consensus 623 VQd~l~~~~~~ 633 (635)
|||+|++++++
T Consensus 573 VQd~l~e~~d~ 583 (645)
T KOG1158|consen 573 VQDRLREYADE 583 (645)
T ss_pred hhhHHHHHHHH
Confidence 99999998874
No 3
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=100.00 E-value=7.6e-94 Score=809.60 Aligned_cols=478 Identities=28% Similarity=0.465 Sum_probs=417.3
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 006697 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (635)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F 161 (635)
.+++|+|+|||||||||.+|++|++.+.++ |+.+++.++++++.++ +.+++.+||++||||+|+||+||..|
T Consensus 60 ~~~~v~IlygSqTGnae~lA~~la~~l~~~--g~~~~v~~~~d~~~~~------L~~~~~vl~v~ST~G~Ge~Pdna~~F 131 (600)
T PRK10953 60 EMPGITLISASQTGNARRVAEQLRDDLLAA--KLNVNLVNAGDYKFKQ------IAQEKLLIVVTSTQGEGEPPEEAVAL 131 (600)
T ss_pred CCCeEEEEEEcCchHHHHHHHHHHHHHHhC--CCCcEEechHhCCHhH------hccCCeEEEEECCCCCCCCChhHHHH
Confidence 367899999999999999999999999988 8999999999998877 88999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecceeecCCCCchHHHHHHHHHHHHHHHH
Q 006697 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 241 (635)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 241 (635)
|+||..... ..|++++||||||||++|++||+++|.+|++|+++||+|+.+++.+|. +++++|+.|.+++|++|.+
T Consensus 132 ~~~L~~~~~--~~L~~~~faVfGLGDssY~~Fc~~~k~ld~rL~~lGA~rl~~~~d~D~--~~e~~~~~W~~~~~~~l~~ 207 (600)
T PRK10953 132 HKFLFSKKA--PKLENTAFAVFGLGDTSYEFFCQAGKDFDSKLAELGAERLLDRVDADV--EYQAAASEWRARVVDALKS 207 (600)
T ss_pred HHHHhhCcC--cCCCCCEEEEEccCccCHHHHHHHHHHHHHHHHHCCCeEeeccccccc--ccHHHHHHHHHHHHHHHHh
Confidence 999975432 239999999999999999999999999999999999999999987765 4899999999999999987
Q ss_pred hhcCCCCCCCCCCCCcccCCceEEEEcCCcccccCCCCCCCCCCCCCCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEe
Q 006697 242 LLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDV 321 (635)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~V~~~~~L~~~~~~r~~~hie~di 321 (635)
...... .+. .... .. .. . .....+|+..+||.|+|+.|++|+.++++|+|+|||||+
T Consensus 208 ~~~~~~------~~~-----~~~~--~~-~~-----~----~~~~~~~~~~~p~~a~v~~n~~Lt~~~~~k~~rhie~dl 264 (600)
T PRK10953 208 RAPAVA------APS-----QSVA--TG-AV-----N----EIHTSPYSKEAPLTASLSVNQKITGRNSEKDVRHIEIDL 264 (600)
T ss_pred hcCCcc------ccc-----cccc--cc-cc-----c----ccccCCCCCCCCeEEEEEEEeecCCCCCCceEEEEEEec
Confidence 543211 000 0000 00 00 0 001236788999999999999999999999999999999
Q ss_pred cCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeCCCCCCCCCCCCCCCCCCcccHHHHHhhhhccCCccc
Q 006697 322 SGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPR 401 (635)
Q Consensus 322 ~~~~l~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~pfp~p~tl~~~l~~~~Dl~~~p~ 401 (635)
++++++|+|||||+|||+|+++.|+++|++||+++++.+.+.. .++|++++|++|+||+.+ +
T Consensus 265 ~~~~l~Y~~GD~lgV~P~N~~~~V~~~l~~l~l~~~~~v~~~~-----------------~~~tl~~~l~~~~dl~~~-~ 326 (600)
T PRK10953 265 GDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDG-----------------KTLPLAEALQWHFELTVN-T 326 (600)
T ss_pred CCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEeCC-----------------CCCCHHHHHHHhcccCCC-c
Confidence 9999999999999999999999999999999999998876631 267999999999999985 7
Q ss_pred HHHHHHHHHhCCCHHHHHHHhhccCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChhhHHHHhcCCCCccccccCCCCC
Q 006697 402 KAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPR 481 (635)
Q Consensus 402 ~~~l~~La~~~~d~~~k~~L~~l~s~~~~~~y~~~i~~~~~sl~dvl~~f~s~~~p~~~ll~~~~p~l~pR~YSIsSsp~ 481 (635)
+.+|+.+|.++.+++ |+.+. ++++.+..|.. .++++|||.+|| ++++++||++++ |+++||+|||||+|.
T Consensus 327 ~~~l~~~a~~~~~~~----l~~~~--~~~~~~~~~~~--~~~~~dvL~~f~-~~~~~~q~l~ll-~~l~pR~YSIaSsp~ 396 (600)
T PRK10953 327 ANIVENYATLTRSET----LLPLV--GDKAALQHYAA--TTPIVDMVRFAP-AQLDAEQLIGLL-RPLTPRLYSIASSQA 396 (600)
T ss_pred HHHHHHHHHhCCCHH----HHHHh--cCHHHHHHHhc--CCCHHHHHHhCC-CCCCHHHHHHhC-CCCCCeeeecccCCC
Confidence 899999999999864 33442 35667777764 689999999997 689999999999 999999999999998
Q ss_pred CCCCeEEEEEEEEEecCCCCCcccCccchHHhh-cCCCCCCCCccEEEEEeeCC-CCcCCCCCCCcEEEEecCCCchhHH
Q 006697 482 FAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFR 559 (635)
Q Consensus 482 ~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~g-~F~lp~~~~~piImIg~GTGIAPfr 559 (635)
..+++++|+|+++.|.. .|+.+.|+||+||.+ +++| +.|.|+++.| .|++|.++++|+||||+||||||||
T Consensus 397 ~~~~~v~ltv~~v~~~~-~g~~~~G~~S~~L~~~l~~G------d~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfr 469 (600)
T PRK10953 397 EVENEVHITVGVVRYDI-EGRARAGGASSFLADRLEEE------GEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFR 469 (600)
T ss_pred CCCCeEEEEEEEEEeec-CCCCcCceEhhhhhhcCCCC------CEEEEEeccCCcccCCCCCCCCEEEEecCcCcHHHH
Confidence 77899999999998874 578889999999996 8899 8999999876 8999988889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEEecCCCCcccchhHHhccccc
Q 006697 560 GFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKVSC 633 (635)
Q Consensus 560 s~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~SR~~~~k~yVQd~l~~~~~~ 633 (635)
||||+|... + ..+++|||||||++.+||+|++||++|.+.|.++++++||||++.+|+||||+|.+++++
T Consensus 470 sflq~r~~~---~-~~~~~~LffG~R~~~~D~lY~~El~~~~~~g~l~~l~~afSRd~~~k~YVQ~~l~e~~~~ 539 (600)
T PRK10953 470 AFMQQRAAD---G-APGKNWLFFGNPHFTEDFLYQVEWQRYVKEGLLTRIDLAWSRDQKEKIYVQDKLREQGAE 539 (600)
T ss_pred HHHHHHHHc---C-CCCCeEEEeeccCCccchhHHHHHHHHHHcCCcceEEEEECCCCCCCCcHHHHHHHHHHH
Confidence 999999862 2 458999999999977799999999999999999999999999998999999999987653
No 4
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=100.00 E-value=4.3e-92 Score=798.97 Aligned_cols=476 Identities=32% Similarity=0.561 Sum_probs=418.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~ 162 (635)
.++|+|+|||||||||.+|++|++.+.++ |+.+++.+|++++.++ +.+++.+||++||||+|+||+||..|+
T Consensus 58 ~~~i~IlygSqTGnae~~A~~l~~~l~~~--g~~~~v~~~~d~~~~~------l~~~~~li~v~ST~GeGe~Pdna~~F~ 129 (597)
T TIGR01931 58 EKRVTILYGSQTGNARRLAKRLAEKLEAA--GFSVRLSSADDYKFKQ------LKKERLLLLVISTQGEGEPPEEAISFH 129 (597)
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHhC--CCccEEechHHCCHhh------cccCceEEEEeCCCCCCcCCHHHHHHH
Confidence 67899999999999999999999999988 8999999999999877 889999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecceeecCCCCchHHHHHHHHHHHHHHHHh
Q 006697 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQL 242 (635)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 242 (635)
+||..... ..|++++||||||||++|++||.++|.+|++|+++||+++.+++.+|. +++++|++|.+++|++|.+.
T Consensus 130 ~~L~~~~~--~~L~~~~~aVfGLGDssY~~fc~~~k~~d~~L~~lGa~ri~~~~~~D~--~~e~~~~~W~~~~~~~l~~~ 205 (597)
T TIGR01931 130 KFLHSKKA--PKLENLRYSVLGLGDSSYEFFCQTGKDFDKRLEELGGKRLLPRVDADL--DYDANAAEWRAGVLTALNEQ 205 (597)
T ss_pred HHHHhCCC--cccCCCeEEEEeCCcCCHHHHhHHHHHHHHHHHHcCCeEeeccccCcc--ChHHHHHHHHHHHHHHHHhh
Confidence 99976432 239999999999999999999999999999999999999999998876 48899999999999999765
Q ss_pred hcCCCCCCCCCCCCcccCCceEEEEcCCcccccCCCCCCCCCCCCCCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEec
Q 006697 243 LRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVS 322 (635)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~V~~~~~L~~~~~~r~~~hie~di~ 322 (635)
...... .|. +.+. +.. ......+|+..+||.|+|+.|++|+..+++++|+|||||++
T Consensus 206 ~~~~~~-----~~~------~~~~---~~~---------~~~~~~~~~~~~p~~a~v~~n~~lt~~~~~k~~~hiel~l~ 262 (597)
T TIGR01931 206 AKGSAS-----TPS------LSET---PAR---------SQTATSVYSKQNPFRAEVLENQKITGRNSKKDVRHIEIDLE 262 (597)
T ss_pred ccCccC-----CCc------ceec---ccc---------cccccCCccCCCCeEEEEEeeEecCCCCCCceEEEEEEecC
Confidence 421110 110 1100 000 00123457789999999999999999999999999999999
Q ss_pred CCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeCCCCCCCCCCCCCCCCCCcccHHHHHhhhhccCCcccH
Q 006697 323 GTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRK 402 (635)
Q Consensus 323 ~~~l~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~pfp~p~tl~~~l~~~~Dl~~~p~~ 402 (635)
+++++|+|||||+|||+|+++.|+++|++||+++++.+++. +.++|++++|++|+||+. ++|
T Consensus 263 ~~~~~Y~~GD~l~V~P~N~~~~V~~~l~~l~l~~~~~v~~~-----------------~~~~tl~~~l~~~~dl~~-~~~ 324 (597)
T TIGR01931 263 GSGLHYEPGDALGVWYKNDPALVKEILKLLNLDPDEKVTIG-----------------GKTIPLFEALITHFELTQ-NTK 324 (597)
T ss_pred CCCCccCCCCEEEEEeCCCHHHHHHHHHHhCCCCCCeEEeC-----------------CCCcCHHHHHHhceeCCC-CCH
Confidence 99999999999999999999999999999999999887653 136899999999999998 589
Q ss_pred HHHHHHHHhCCCHHHHHHHhhccCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChhhHHHHhcCCCCccccccCCCCCC
Q 006697 403 AALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF 482 (635)
Q Consensus 403 ~~l~~La~~~~d~~~k~~L~~l~s~~~~~~y~~~i~~~~~sl~dvl~~f~s~~~p~~~ll~~~~p~l~pR~YSIsSsp~~ 482 (635)
.+|+.||.+|+|++.++.| ++++.|.+|+. .++++|||.+|| +++++|||++++ |+++||+|||||+|..
T Consensus 325 ~~l~~la~~~~~~~l~~~~------~~~~~~~~y~~--~~~~~dvl~~fp-~~~~~gq~v~ll-~~~~~R~YSIaSsp~~ 394 (597)
T TIGR01931 325 PLLKAYAELTGNKELKALI------ADNEKLKAYIQ--NTPLIDLIRDYP-ADLDAEQLISLL-RPLTPRLYSISSSQSE 394 (597)
T ss_pred HHHHHHHHhcCCHHHHHHh------cCHHHHHHHHc--CCCHHHHHHHCC-CCCCHHHHHHhC-cccCCceeeeccCccc
Confidence 9999999999998665433 26777888885 789999999999 899999999999 9999999999999987
Q ss_pred CCCeEEEEEEEEEecCCCCCcccCccchHHhh-cCCCCCCCCccEEEEEeeCC-CCcCCCCCCCcEEEEecCCCchhHHH
Q 006697 483 APDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRG 560 (635)
Q Consensus 483 ~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~g-~F~lp~~~~~piImIg~GTGIAPfrs 560 (635)
++++++|+|+++.|.. .|+.+.|+||+||.+ +++| ++|.|+++.| .|++|.++++|+||||+|||||||||
T Consensus 395 ~~~~l~ltV~~v~~~~-~~~~~~G~~S~~L~~~l~~G------d~v~v~~~~~~~F~lp~~~~~piImIg~GTGIAPfrs 467 (597)
T TIGR01931 395 VGDEVHLTVGVVRYQA-HGRARLGGASGFLAERLKEG------DTVPVYIEPNDNFRLPEDPDTPIIMIGPGTGVAPFRA 467 (597)
T ss_pred CCCEEEEEEEEEEecC-CCCccccchhHHHHhhCCCC------CEEEEEEeeCCcccCCCCCCCCEEEEcCCcCchhHHH
Confidence 7889999999998874 678889999999998 9999 8999999765 89999888899999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEEecCCCCcccchhHHhcccc
Q 006697 561 FLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKVS 632 (635)
Q Consensus 561 ~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~SR~~~~k~yVQd~l~~~~~ 632 (635)
|||+|... + ..+++|||||||+..+|++|++||++|.+.+.+++++++|||++..|+||||+|.++++
T Consensus 468 flq~r~~~---~-~~g~~~LffG~R~~~~D~ly~~El~~~~~~~~l~~l~~afSRd~~~k~yVqd~l~e~~~ 535 (597)
T TIGR01931 468 FMQERAED---G-AKGKNWLFFGNPHFTTDFLYQVEWQNYLKKGVLTKMDLAFSRDQAEKIYVQHRIREQGA 535 (597)
T ss_pred HHHHHHHc---c-CCCCEEEEECCCCCCcchhHHHHHHHHHHcCCCceeEEEEecCCCCCccHHHHHHHhHH
Confidence 99999862 2 45899999999996669999999999999999999999999988789999999998753
No 5
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-88 Score=753.29 Aligned_cols=479 Identities=37% Similarity=0.633 Sum_probs=429.2
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 006697 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (635)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F 161 (635)
....++|+||||||||+.+|+.+++++... |+.+.+.++++|+..+ +.....++|++||+|+|++|+||..|
T Consensus 46 ~~~~~~il~~sqtG~a~~~A~~~a~~~~~~--g~~~~~~~~~~~~~~~------~~~~~~~~~i~st~geGe~p~na~~f 117 (587)
T COG0369 46 NNKPITVLYGSQTGNAEGLAEELAKELEAA--GLQVLVASLDDYKPKD------IAEERLLLFVVSTQGEGEPPDNAVAF 117 (587)
T ss_pred CCCceEEEEccCCccHHHHHHHHHHHHHhc--CCceeecchhhcChhh------HHhhhceEEEEccccCCCCCCchHHH
Confidence 578899999999999999999999999988 8889999999999887 55557899999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecceeecCCCCchHHHHHHHHHHHHHHHH
Q 006697 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 241 (635)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 241 (635)
+++|.... ...|.+++|+||||||++|+.||.++|.++++|..+||+++.+++++|.. +.+++...|.+.+++.+..
T Consensus 118 ~~~l~~~~--a~~L~~l~yav~~lGDssy~~~~~~~k~~~~~l~~~Ga~~l~~~~~~D~~-~~e~~~~~w~~~~~~~l~~ 194 (587)
T COG0369 118 HEFLKGKK--APKLDGLRYAVLGLGDSSYEFFCQAGKDFDRRLQELGATRLFPRVEADVQ-DFEAAAAPWRDDVLELLKS 194 (587)
T ss_pred HHHhcccc--cccccccchhhhcCCccchhhhhccchhhHHHHHhcCcccccCccccccc-ccchhhhHHHHHHHHHHHh
Confidence 99998742 23499999999999999999999999999999999999999999999986 7899999999999999886
Q ss_pred hhcCCCCCCCCCCCCcccCCceEEEEcCCcccccCCCCCCCCCCCCCCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEe
Q 006697 242 LLRDEDDANTVSTPYTAAIPEYRVMIHGPTVTSSVDNYSNMPNGNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDV 321 (635)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~V~~~~~L~~~~~~r~~~hie~di 321 (635)
.......... .++. . + ....++....|+.+.+..|++|+..+++|+++||+||+
T Consensus 195 ~~~~~~~~~~--~~~~-----~------~-------------~~~~~~~~~~~~~a~~~~n~~l~~~~~~k~~rhie~~l 248 (587)
T COG0369 195 KFPGQEAAPA--QVAT-----S------P-------------QSESPYSKPAPSVAILLENRKLTGRDSDKDVRHIELDL 248 (587)
T ss_pred hccccccccc--cccc-----h------h-------------cccccccccCcceeEeeccccCCccccCceeEEEEeec
Confidence 5432211100 0000 0 0 01234556788999999999999999999999999999
Q ss_pred cCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeCCCCCCCCCCCCCCCCCCcccHHHHHhhhhccCCccc
Q 006697 322 SGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPR 401 (635)
Q Consensus 322 ~~~~l~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~pfp~p~tl~~~l~~~~Dl~~~p~ 401 (635)
++++++|+|||+++|||+|+++.|+++|..+||++++.+.++ +.+.++.++|.+|+|++..|
T Consensus 249 ~~s~~~y~~GD~lgV~p~N~~~lV~~~l~~~gl~~~~~v~~~-----------------~~~~~~~~~l~~~~e~~~~~- 310 (587)
T COG0369 249 PDSGLRYEPGDALGVWPENDPELVDEFLELLGLDPEEPVTVD-----------------GETLPLVEALKSHFEFTSAP- 310 (587)
T ss_pred ccccceeCCCCeeEEcCCCCHHHHHHHHHHcCCCCCceeccC-----------------CCcchHHHHHHHheecccch-
Confidence 999999999999999999999999999999999998766321 34789999999999999999
Q ss_pred HHHHHHHHHhCCCHHHHHHHhhccCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCChhhHHHHhcCCCCccccccCCCCC
Q 006697 402 KAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPR 481 (635)
Q Consensus 402 ~~~l~~La~~~~d~~~k~~L~~l~s~~~~~~y~~~i~~~~~sl~dvl~~f~s~~~p~~~ll~~~~p~l~pR~YSIsSsp~ 481 (635)
|+++..|+.|+.+++.++.|+.++ ...++.|.. +++++|+|.+||++++|+++|++.+ |+++||+|||||++.
T Consensus 311 ~~~~~~l~~~~~~~~~~~~l~~l~----~~~~~~~~~--~~~~~d~L~~f~~~~l~~~~li~~l-~~lkPR~YSIsSs~~ 383 (587)
T COG0369 311 KSLLENLAHFAGQEELRRLLEQLD----IADLQDYAK--RRTLIDVLRDFPPAKLPAEELIDLL-PPLKPRLYSIASSPG 383 (587)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhh----hHHHHhhhc--cccHHHHHhhccccCCCHHHHHHhC-ccCCCeeeEeccCCC
Confidence 999999999999999999999884 566666666 8999999999999999999999999 999999999999999
Q ss_pred CCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCC-CCCCCCccEEEEEeeCC-CCcCCCCCCCcEEEEecCCCchhHH
Q 006697 482 FAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIP-LEGNGDCSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFR 559 (635)
Q Consensus 482 ~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~-g~~~~~~~~v~i~~~~g-~F~lp~~~~~piImIg~GTGIAPfr 559 (635)
.+++++||||.+|+|..+ ++.|.|+||+||+++.. | +.++|+++.+ +|++|.++.+||||||+||||||||
T Consensus 384 ~~~~~vhltV~vV~y~~~-~~~r~GvcS~~L~~~~~~g------~~i~v~v~~n~nf~lp~~~~~PiIMIG~GTGIAPFR 456 (587)
T COG0369 384 VSPDEVHLTVGVVRYQAE-GRERYGVCSGYLADLLEEG------DTIPVFVQPNKNFRLPEDPETPIIMIGPGTGIAPFR 456 (587)
T ss_pred CCCCeEEEEEEEEEeccC-CCcccccchHHHHhhhcCC------CeEEEEeccCCccccCCCCCCceEEEcCCCCchhHH
Confidence 999999999999999997 55889999999999877 6 8999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEEecCCCCcccchhHHhccccc
Q 006697 560 GFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKVSC 633 (635)
Q Consensus 560 s~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~SR~~~~k~yVQd~l~~~~~~ 633 (635)
||+|+|... + ..|++|||||||+.++||+|++||++|.+.|.++++.+|||||+.+|.||||+|++++++
T Consensus 457 afvq~r~~~---~-~~gk~wLfFG~R~~~~DfLY~~Ewe~~~~~G~~~~l~~AfSRdq~~KiYVQd~lre~~de 526 (587)
T COG0369 457 AFVQERAAN---G-AEGKNWLFFGCRHFTEDFLYQEEWEEYLKDGVLTRLDLAFSRDQEEKIYVQDRLREQADE 526 (587)
T ss_pred HHHHHHHhc---c-ccCceEEEecCCCCccchhhHHHHHHHHhcCCceeEEEEEeecCCCCccHHHHHHHhHHH
Confidence 999999973 3 456999999999988899999999999999999999999999999999999999999874
No 6
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=100.00 E-value=1.9e-67 Score=575.34 Aligned_cols=327 Identities=51% Similarity=0.900 Sum_probs=302.1
Q ss_pred CCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCC-CccEEEEeeCCCCC
Q 006697 291 IHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQS-LELLFSLHTDNEDG 369 (635)
Q Consensus 291 ~~~p~~a~V~~~~~L~~~~~~r~~~hie~di~~~~l~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~-~~~~~~~~~~~~~~ 369 (635)
..+||.|+|+++++|+.+ ++|+++||+||+++++++|+|||||+|||+|+++.|+++|++||++ ++++|.+....+.
T Consensus 2 ~~~~~~~~v~~~~~lt~~-~~~~~~~~~ld~~~~~~~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~i~~~~~~~~- 79 (416)
T cd06204 2 AKNPFLAPVAVSRELFTG-SDRSCLHIEFDISGSGIRYQTGDHLAVWPTNPSEEVERLLKVLGLDDRDTVISLKSLDEP- 79 (416)
T ss_pred CCCCeEeEEEEEeeccCC-CCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCceEEeecCCcc-
Confidence 467999999999999999 8899999999999889999999999999999999999999999999 8999988765431
Q ss_pred CCCCCCCCCCCCCcccHHHHHhhhhccCCcccHHHHHHHHHhCCCHHHHHHHhhccCCCChhHHHHHHHhcCCCHHHHHH
Q 006697 370 TPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMA 449 (635)
Q Consensus 370 ~~~~~~~~~pfp~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~d~~~k~~L~~l~s~~~~~~y~~~i~~~~~sl~dvl~ 449 (635)
.+...|||.|+|++++|++|+||+++|+|.+|+.||.||+|+++|++|..|+| +|.++|.+|+.++++|++|||.
T Consensus 80 ----~~~~~~~~~~~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~s-~~~~~~~~~~~~~~~~~~dvL~ 154 (416)
T cd06204 80 ----ASKKVPFPCPTTYRTALRHYLDITAPVSRQVLAALAQFAPDPEEKERLLKLAS-EGKDEYAKWIVEPHRNLLEVLQ 154 (416)
T ss_pred ----cccCCCCCCCccHHHHHHhhEEeCCCCcHHHHHHHHHHcCCHHHHHHHHHHHh-cCHHHHHHHHhhcCCCHHHHHH
Confidence 13466899999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred hCCCCC---CChhhHHHHhcCCCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcC----------
Q 006697 450 EFPSAT---PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAI---------- 516 (635)
Q Consensus 450 ~f~s~~---~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~---------- 516 (635)
+||+++ +|++.|++++ |+++||+|||||+|..+++.++|||+++.++++.|+.+.|+||+||+++.
T Consensus 155 ~f~s~~~~~~pl~~ll~~l-p~~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~ 233 (416)
T cd06204 155 DFPSAKPTPPPFDFLIELL-PRLQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPT 233 (416)
T ss_pred hCcccCCCCCCHHHHHHhC-ccCCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhccccccc
Confidence 999999 9999999999 99999999999999877899999999999999988999999999999977
Q ss_pred -----------CCCCCCCccEEEEEeeCCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeec
Q 006697 517 -----------PLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCR 585 (635)
Q Consensus 517 -----------~g~~~~~~~~v~i~~~~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R 585 (635)
+| +.|.+.+|.|.|.+|.+..+|+||||+||||||||||++++....+++...++++||||||
T Consensus 234 ~~~~~~~~~~~~g------~~v~v~~~~g~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R 307 (416)
T cd06204 234 PYYLSGPRKKGGG------SKVPVFVRRSNFRLPTKPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCR 307 (416)
T ss_pred ccccccccccCCC------CeEEEEEecCCCCCCCCCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCC
Confidence 45 8999999999999998878999999999999999999999876543343468999999999
Q ss_pred CCCcccccHHHHHHHHHcCCccEEEEEEecCCCCcccchhHHhccc
Q 006697 586 NRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMDKV 631 (635)
Q Consensus 586 ~~~~d~ly~del~~~~~~g~~~~l~~a~SR~~~~k~yVQd~l~~~~ 631 (635)
++++|++|++||++|++.+.+++++++|||++..++||||+|.++.
T Consensus 308 ~~~~d~ly~~el~~~~~~~~~~~l~~a~Sr~~~~k~yVq~~i~~~~ 353 (416)
T cd06204 308 HPDEDFIYKDELEEYAKLGGLLELVTAFSREQPKKVYVQHRLAEHA 353 (416)
T ss_pred CCCcccchHHHHHHHHHcCCceEEEEEECcCCCCCcchHHHHHHhH
Confidence 9955999999999999998889999999999888999999998754
No 7
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=100.00 E-value=7.5e-66 Score=558.01 Aligned_cols=317 Identities=42% Similarity=0.762 Sum_probs=294.0
Q ss_pred EEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeCCCCCCCCCCCCCC
Q 006697 299 VAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLTP 378 (635)
Q Consensus 299 V~~~~~L~~~~~~r~~~hie~di~~~~l~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~ 378 (635)
|++|++|+.++++++|+||+|++++++++|+|||||+|||+|+++.|+++|++||+++++.+.++.... .+...
T Consensus 2 v~~~~~lt~~~~~~~~~hl~l~~~~~~~~y~~GD~l~v~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~------~~~~~ 75 (382)
T cd06207 2 VTENKRLTPADYDRSTRHIEFDLGGSGLSYETGDNLGIYPENSDALVDEFLARLGLDGDDVVRVEPNEQ------QRGKP 75 (382)
T ss_pred cceeeecCCCCCCceEEEEEEecCCCCCccCCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEecccc------cccCC
Confidence 678999999999999999999998889999999999999999999999999999999999998876441 13466
Q ss_pred CCCCcccHHHHHhhhhccCCcccHHHHHHHHHhCCCHHHHHHHhhccCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCCh
Q 006697 379 PFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPPI 458 (635)
Q Consensus 379 pfp~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~d~~~k~~L~~l~s~~~~~~y~~~i~~~~~sl~dvl~~f~s~~~p~ 458 (635)
|||.|+|++++|++|+||+++|+|++|+.||.||+|+++|++|.+|++.++.+.|.++ ++++++|+|.+||++++|+
T Consensus 76 ~~~~~~t~~~ll~~~~dl~~~p~~~~l~~La~~~~~~~~k~~L~~l~~~~~~~~~~~~---~~~~~~d~L~~f~~~~~~~ 152 (382)
T cd06207 76 PFPEPISVRQLLKKFLDIFGKPTKKFLKLLSQLATDEEEKEDLYKLASREGRTEYKRY---EKYTYLEVLKDFPSVRPTL 152 (382)
T ss_pred CCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhChhhHHHHHhc---cCCCHHHHHHhCCcCCCCH
Confidence 8999999999999999999999999999999999999999999999999999999988 7899999999999999999
Q ss_pred hhHHHHhcCCCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEeeCCCCcC
Q 006697 459 GVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKL 538 (635)
Q Consensus 459 ~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~g~F~l 538 (635)
+.|++.+ |+++||+|||||+|..+++.++|+|+++.+.++.++.+.|+||+||.++++| +.|.|.+|.|.|++
T Consensus 153 ~~ll~~l-p~l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~~p~g~F~l 225 (382)
T cd06207 153 EQLLELC-PLIKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVG------QRVTVFIKKSSFKL 225 (382)
T ss_pred HHHHHhC-cCCCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCC------CEEEEEEECCcccC
Confidence 9999999 9999999999999987678999999999998888888899999999999999 89999999999999
Q ss_pred CCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEEecCCC
Q 006697 539 PANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS 618 (635)
Q Consensus 539 p~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~SR~~~ 618 (635)
|.+..+|+||||+||||||||||||++.++.+++...++++||||||+++.|++|++||++|++.+.+++++++|||++.
T Consensus 226 p~~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R~~~~d~~y~~el~~~~~~~~~~~~~~a~Srd~~ 305 (382)
T cd06207 226 PKDPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCRHEDKDYLYKEELEEYEKSGVLTTLGTAFSRDQP 305 (382)
T ss_pred CCCCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCCCCCccccHHHHHHHHHhCCCCceEEEEecCCCC
Confidence 98878999999999999999999999986544444578999999999995599999999999999999999999999988
Q ss_pred CcccchhHHhccc
Q 006697 619 QKEYVQHKMMDKV 631 (635)
Q Consensus 619 ~k~yVQd~l~~~~ 631 (635)
.++||||+|.+++
T Consensus 306 ~~~yVq~~l~~~~ 318 (382)
T cd06207 306 KKVYVQDLIRENS 318 (382)
T ss_pred CceEhHHHHHHCH
Confidence 8999999998754
No 8
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=100.00 E-value=2.8e-65 Score=555.61 Aligned_cols=320 Identities=38% Similarity=0.665 Sum_probs=288.5
Q ss_pred EEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCC--CccEEEEeeCCCCCCCCCCCC
Q 006697 299 VAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQS--LELLFSLHTDNEDGTPRGSSL 376 (635)
Q Consensus 299 V~~~~~L~~~~~~r~~~hie~di~~~~l~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~--~~~~~~~~~~~~~~~~~~~~~ 376 (635)
|..+++||.++++++++||+||+++++++|+|||||+|||+|+++.|+++|+.||++ +++.+.++.....+.. +...
T Consensus 2 v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 80 (398)
T cd06203 2 ISSAKKLTEGDDVKTVVDLTLDLSPTGFDYQPGDTIGILPPNTASEVESLLKRLGLLEQADQPCEVKVVPNTKKK-NAKV 80 (398)
T ss_pred cccceEECCCCCCceEEEEEEecCCCCCcCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCCCCEEEEEecCCcccc-cccc
Confidence 678999999999999999999998889999999999999999999999999999999 7888888753322111 1235
Q ss_pred CCCCCCcccHHHHHhhhhccCCcccHHHHHHHHHhCCCHHHHHHHhhccCCCChhHHHHHHHhcCCCHHHHHHhCCCCCC
Q 006697 377 TPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATP 456 (635)
Q Consensus 377 ~~pfp~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~d~~~k~~L~~l~s~~~~~~y~~~i~~~~~sl~dvl~~f~s~~~ 456 (635)
+.+||.|+|++++|++|+||+++|+|++|+.||.||+|+.+|++|.+|++.+|+++|.+|+.++++|++|||++||++++
T Consensus 81 ~~~~p~~~tl~~ll~~~~Dl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~~~~dvL~~f~s~~~ 160 (398)
T cd06203 81 PVHIPKVVTLRTILTWCLDIRAIPKKPLLRALAEFTSDDNEKRRLEELCSKQGSEDYTDFVRKRGLSLLDLLEAFPSCRP 160 (398)
T ss_pred CCCCCCCccHHHHHHHhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHcChhhHHHHHHHHhhcCCCHHHHHHhCCCCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHhcCCCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcC-----CCCCCCCccEEEEEe
Q 006697 457 PIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAI-----PLEGNGDCSWAPIFI 531 (635)
Q Consensus 457 p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~-----~g~~~~~~~~v~i~~ 531 (635)
|++.+++.+ |+++||+|||||+|..+++.++|+|+++.+++ .|+||+||+++. +| +.|.+.+
T Consensus 161 pl~~ll~~l-p~~~~R~YSIsSsp~~~~~~i~l~v~~v~~~~------~G~~S~~L~~l~~~~~~~G------~~v~i~~ 227 (398)
T cd06203 161 PLSLLIEHL-PRLQPRPYSIASSPLEGPGKLRFIFSVVEFPA------KGLCTSWLESLCLSASSHG------VKVPFYL 227 (398)
T ss_pred CHHHHHHhC-ccCCCcceeecCCcccCCCeEEEEEEEEEecC------CChhhHHHHHhhhhhcCCC------CEEEEEE
Confidence 999999999 99999999999999876899999999987554 599999999988 88 8999999
Q ss_pred e-CCCCcCCCC-CCCcEEEEecCCCchhHHHHHHHHHHHHh--cCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCcc
Q 006697 532 R-PSNFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQ--DGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVIS 607 (635)
Q Consensus 532 ~-~g~F~lp~~-~~~piImIg~GTGIAPfrs~lq~r~~~~~--~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~ 607 (635)
+ .|.|.+|.+ ..+|+||||+||||||||||+|++.+..+ ++...++++||||||+++.|++|++||++|++.+.++
T Consensus 228 ~~~g~F~lp~~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R~~~~d~~y~~El~~~~~~~~~~ 307 (398)
T cd06203 228 RSSSRFRLPPDDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCRHRDRDYLFRDELEEFLEEGILT 307 (398)
T ss_pred ecCCCcCCCCcCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCCCCCcchhHHHHHHHHHHcCCCc
Confidence 5 558999977 67899999999999999999999986432 1235689999999999955999999999999999999
Q ss_pred EEEEEEecCCC---CcccchhHHhcccc
Q 006697 608 ELILAFSREGS---QKEYVQHKMMDKVS 632 (635)
Q Consensus 608 ~l~~a~SR~~~---~k~yVQd~l~~~~~ 632 (635)
++++||||++. .++||||+|.++++
T Consensus 308 ~~~~a~SRd~~~~g~k~yVqd~l~~~~~ 335 (398)
T cd06203 308 RLIVAFSRDENDGSTPKYVQDKLEERGK 335 (398)
T ss_pred eEEEEECCCCCCCCCceecchHHHhCHH
Confidence 99999999987 58999999988753
No 9
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=100.00 E-value=8.1e-65 Score=553.08 Aligned_cols=325 Identities=41% Similarity=0.720 Sum_probs=287.5
Q ss_pred EEEeEEecCCCCCCceEEEEEEecC-CCCccCCCCeEEEeccCCHHHHHHHHHHhCCC--CccEEEEeeCCCCCCCCC--
Q 006697 299 VAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVENCDETVEEAGKLLGQS--LELLFSLHTDNEDGTPRG-- 373 (635)
Q Consensus 299 V~~~~~L~~~~~~r~~~hie~di~~-~~l~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~--~~~~~~~~~~~~~~~~~~-- 373 (635)
|+.+++|+.+++.|+|+||+||+++ ++++|+|||||+|||+|+++.|+++|++||+. .++.+.++...+.....+
T Consensus 2 ~~~~~~l~~~~~~~~~~~i~ld~~~~~~~~Y~~GD~l~V~p~N~~~~V~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T cd06202 2 VISRQNLQSPKSSRSTILVKLDTNGAQELHYQPGDHVGIFPANRPELVDALLDRLHDAPPPDQVIKLEVLEERSTALGII 81 (406)
T ss_pred cceeeecCCCCCCceEEEEEEECCCCCCCCCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCCceEEEEecCCCCcccccc
Confidence 6789999999999999999999997 68999999999999999999999999999985 467888875444221110
Q ss_pred -CCCCCCCCCcccHHHHHhhhhccCCcccHHHHHHHHHhCCCHHHHHHHhhccCCCChhHHHHHHHhcCCCHHHHHHhCC
Q 006697 374 -SSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFP 452 (635)
Q Consensus 374 -~~~~~pfp~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~d~~~k~~L~~l~s~~~~~~y~~~i~~~~~sl~dvl~~f~ 452 (635)
.....++|.|+|++++|++|+||+++|+|++|+.||.||+|+.+|++|+.|++ +++.|.+|+..+++|++|||.+||
T Consensus 82 ~~~~~~~~~~~~tl~~ll~~~lDl~~~p~~~~l~~la~~~~~~~~k~~L~~l~~--~~~~~~~~~~~~~~~~~dvL~~f~ 159 (406)
T cd06202 82 KTWTPHERLPPCTLRQALTRYLDITTPPTPQLLQLLATLATDEKDKERLEVLGK--GSSEYEDWKWYKNPNILEVLEEFP 159 (406)
T ss_pred ccccccCCCCCccHHHHHHhhEEeCCCCCHHHHHHHHHHCCCHHHHHHHHHHhc--CHHHHHHHHhccCCCHHHHHHhCC
Confidence 11234667799999999999999999999999999999999999999999975 888999999999999999999999
Q ss_pred CCCCChhhHHHHhcCCCCccccccCCCCCCCCCeEEEEEEEEEecCCC--CCcccCccchHHhhcCCCCCCCCccEEEEE
Q 006697 453 SATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPT--GRIHKGVCSTWMKNAIPLEGNGDCSWAPIF 530 (635)
Q Consensus 453 s~~~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~--g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~ 530 (635)
++++|++.|++++ |+++||+|||||+|..+++.++|+|+++.++++. |+.+.|+||+||+++++| +.|.|.
T Consensus 160 s~~~~~~~ll~~l-p~l~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~ 232 (406)
T cd06202 160 SLQVPASLLLTQL-PLLQPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPG------DTVPCF 232 (406)
T ss_pred cCCCCHHHHHHhC-cccCCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCC------CEEEEE
Confidence 9999999999999 9999999999999987789999999999887664 446789999999999999 899999
Q ss_pred eeCC-CCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHh----cCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCC
Q 006697 531 IRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQ----DGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV 605 (635)
Q Consensus 531 ~~~g-~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~----~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~ 605 (635)
++.+ .|++|.++.+|+||||+||||||||||||+|....+ .+...++++||||||+++.|++|++||++|++.+.
T Consensus 233 ~~~~~~F~lp~~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R~~~~d~ly~~El~~~~~~~~ 312 (406)
T cd06202 233 VRSAPSFHLPEDPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCRNSTIDDIYKEETEEAKNKGV 312 (406)
T ss_pred EeeCCccCCCCCCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCCCCCcccchHHHHHHHHHcCC
Confidence 8765 899998888999999999999999999999875421 22246899999999999559999999999999999
Q ss_pred ccEEEEEEecCCC-CcccchhHHhcccc
Q 006697 606 ISELILAFSREGS-QKEYVQHKMMDKVS 632 (635)
Q Consensus 606 ~~~l~~a~SR~~~-~k~yVQd~l~~~~~ 632 (635)
++++++||||++. .++||||+|.++++
T Consensus 313 ~~~~~~a~SR~~~~~k~yVq~~l~~~~~ 340 (406)
T cd06202 313 LTEVYTALSREPGKPKTYVQDLLKEQAE 340 (406)
T ss_pred CceEEEEEcCCCCCCCeehhhHHHHhHH
Confidence 9999999999875 68999999997753
No 10
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=100.00 E-value=2.5e-62 Score=530.83 Aligned_cols=314 Identities=35% Similarity=0.597 Sum_probs=282.3
Q ss_pred EEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeCCCCCCCCCCCCC
Q 006697 298 NVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLT 377 (635)
Q Consensus 298 ~V~~~~~L~~~~~~r~~~hie~di~~~~l~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 377 (635)
+|+.|++|++++++|+++||+|++++ +++|+|||||+|||+|+++.|+++|++||++++..|.++.... ..+
T Consensus 1 ~v~~~~~lt~~~~~~~~~~~~~~~~~-~~~y~~GD~l~v~P~N~~~~V~~~l~~l~l~~~~~i~i~~~~~-------~~~ 72 (384)
T cd06206 1 TVVENRELTAPGVGPSKRHLELRLPD-GMTYRAGDYLAVLPRNPPELVRRALRRFGLAWDTVLTISASGS-------ATG 72 (384)
T ss_pred CeeeEEEcCCCCCCccEEEEEEECCC-CCccCCCCEEEEECCCCHHHHHHHHHHhCCCccCEEEEecCCC-------CCC
Confidence 47889999999999999999999975 8999999999999999999999999999999999998876332 345
Q ss_pred CCCCCcccHHHHHhhhhccCCcccHHHHHHHHHhCCCHHHHHHHhhccCCCChhHHHHHHHhcCCCHHHHHHhCCCCCCC
Q 006697 378 PPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFPSATPP 457 (635)
Q Consensus 378 ~pfp~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~d~~~k~~L~~l~s~~~~~~y~~~i~~~~~sl~dvl~~f~s~~~p 457 (635)
.|+|.|+|++++|++|+||+++|+|++|+.||.||+|+.+|++|..++ ++.|.+++..+++|++|||.+||++++|
T Consensus 73 ~p~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~l~~~~----~~~~~~~~~~~~~~~~d~l~~f~s~~~~ 148 (384)
T cd06206 73 LPLGTPISVSELLSSYVELSQPATRRQLAALAEATRCPDTKALLERLA----GEAYAAEVLAKRVSVLDLLERFPSIALP 148 (384)
T ss_pred CCCCCCEEHHHHHHhhccccCCCCHHHHHHHHHHCCCHHHHHHHHHhh----hhHHHHHHHhcCCCHHHHHHhCCCCCCC
Confidence 688999999999999999999999999999999999999999999884 5689999999999999999999999999
Q ss_pred hhhHHHHhcCCCCccccccCCCCCCCCCeEEEEEEEEEecCCCC-CcccCccchHHhhcCCCCCCCCccEEEEE--eeCC
Q 006697 458 IGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTG-RIHKGVCSTWMKNAIPLEGNGDCSWAPIF--IRPS 534 (635)
Q Consensus 458 ~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g-~~~~G~~S~~L~~l~~g~~~~~~~~v~i~--~~~g 534 (635)
++||++++ |+++||+|||||+|..+++.++|+|+++.++++.+ +.+.|+||+||.++++| +.|.|. +|.|
T Consensus 149 ~~~~l~~~-p~l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~i~~p~g 221 (384)
T cd06206 149 LATFLAML-PPMRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPG------DSIHVSVRPSHS 221 (384)
T ss_pred HHHHHHhC-cccCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCC------CeEEEEEecCCC
Confidence 99999999 99999999999999776789999999998887665 56789999999999999 888875 5667
Q ss_pred CCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEEe
Q 006697 535 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFS 614 (635)
Q Consensus 535 ~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~S 614 (635)
.|.+|.+..+|+||||+||||||||||++++.+....+...++++||||||+++.|++|++||++|++.+. ++++++||
T Consensus 222 ~F~l~~~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R~~~~d~ly~~el~~~~~~~~-~~l~~a~S 300 (384)
T cd06206 222 AFRPPSDPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCRHPDHDDLYRDELEEWEAAGV-VSVRRAYS 300 (384)
T ss_pred ccCCCCCCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCCCCCcccchHHHHHHHHHCCC-eEEEEEec
Confidence 99999877899999999999999999999998654334346899999999999559999999999998654 58999999
Q ss_pred cCCCC-cccchhHHhccc
Q 006697 615 REGSQ-KEYVQHKMMDKV 631 (635)
Q Consensus 615 R~~~~-k~yVQd~l~~~~ 631 (635)
|++.. ++||||+|.+++
T Consensus 301 r~~~~~~~yVq~~i~~~~ 318 (384)
T cd06206 301 RPPGGGCRYVQDRLWAER 318 (384)
T ss_pred ccCCCCCEechhhHHhhH
Confidence 98764 899999997654
No 11
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=100.00 E-value=8.5e-59 Score=498.77 Aligned_cols=293 Identities=39% Similarity=0.612 Sum_probs=262.5
Q ss_pred EEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeCCCCCCCCCCCCC
Q 006697 298 NVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNEDGTPRGSSLT 377 (635)
Q Consensus 298 ~V~~~~~L~~~~~~r~~~hie~di~~~~l~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~ 377 (635)
+|+.|++|++++++++++||+||+++++++|+|||||+|+|+|+++.|+++|++||+++++.+.+
T Consensus 1 ~v~~~~~lt~~~~~~~~~~i~~~~~~~~~~y~~GD~l~i~p~N~~~~V~~~l~~l~l~~~~~~~~--------------- 65 (360)
T cd06199 1 TVLENRLLTGPGSEKETRHIELDLEGSGLSYEPGDALGVYPTNDPALVDELLAALGLSGDEPVST--------------- 65 (360)
T ss_pred CcceeEeCCCCCCCccEEEEEEeCCCCCCcccCCCEEEEEcCCCHHHHHHHHHHhCcCCCCeEeC---------------
Confidence 36789999999999999999999998899999999999999999999999999999999876531
Q ss_pred CCCCCcccHHHHHhhhhccCCcccHHHHHHHHHhCCCHHHHHHHhhccCCCChhHHHHHHHhcCCCHHHHHHhCC--CCC
Q 006697 378 PPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVMAEFP--SAT 455 (635)
Q Consensus 378 ~pfp~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~d~~~k~~L~~l~s~~~~~~y~~~i~~~~~sl~dvl~~f~--s~~ 455 (635)
++|.|+|++++|++|+||+++ .++.|+.||+|+.++++|+. ++++.|.+ ++|++|+|++|| +++
T Consensus 66 -~~~~~~t~~~~l~~~~dl~~~----~~~~l~~~a~~~~~~~~l~~----~~~~~~~~-----~~~~~d~L~~f~~~~~~ 131 (360)
T cd06199 66 -VGGGTLPLREALIKHYEITTL----LLALLESYAADTGALELLAL----AALEAVLA-----FAELRDVLDLLPIPPAR 131 (360)
T ss_pred -CCCCcccHHHHHHhhhhhccC----hHHHHHHhcCCcchHHHHhh----cCHHHHHc-----cCcHHHHHHhccccCCC
Confidence 356799999999999999997 55568999999998888875 67777764 589999999999 999
Q ss_pred CChhhHHHHhcCCCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhc-CCCCCCCCccEEEEEeeCC
Q 006697 456 PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNA-IPLEGNGDCSWAPIFIRPS 534 (635)
Q Consensus 456 ~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l-~~g~~~~~~~~v~i~~~~g 534 (635)
+|+|||++++ |+++||+|||||+|..+++.++|+|+++.+.++ ++.+.|+||+||+++ ++| +.|.|.++.|
T Consensus 132 ~~~gq~l~l~-~~~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~-~~~~~G~~S~~L~~~~~~G------d~v~v~~~~~ 203 (360)
T cd06199 132 LTAEELLDLL-RPLQPRLYSIASSPKAVPDEVHLTVAVVRYESH-GRERKGVASTFLADRLKEG------DTVPVFVQPN 203 (360)
T ss_pred CCHHHHHHhC-cCCCCcceeeccCcccCCCeEEEEEEEeeecCC-CCccceehhHHHHhcCCCC------CEEEEEEecC
Confidence 9999999999 999999999999998777899999999987764 466789999999985 588 8999998776
Q ss_pred -CCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEE
Q 006697 535 -NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (635)
Q Consensus 535 -~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~ 613 (635)
.|++|.++.+|+||||+||||||||||||++.+. + ..++++||||||++..|++|++||++|++.+.++++++||
T Consensus 204 ~~F~lp~~~~~piImIa~GtGIAP~~s~l~~~~~~---~-~~~~~~L~~G~R~~~~D~~y~~el~~~~~~~~~~~~~~a~ 279 (360)
T cd06199 204 PHFRLPEDPDAPIIMVGPGTGIAPFRAFLQEREAT---G-AKGKNWLFFGERHFATDFLYQDELQQWLKDGVLTRLDTAF 279 (360)
T ss_pred CCcCCCCCCCCCEEEEecCcChHHHHHHHHHHHhc---c-CCCcEEEEEcCCCCccchhHHHHHHHHHHcCCCeEEEEEE
Confidence 8999988789999999999999999999998762 2 4589999999999856999999999999999999999999
Q ss_pred ecCCCCcccchhHHhccc
Q 006697 614 SREGSQKEYVQHKMMDKV 631 (635)
Q Consensus 614 SR~~~~k~yVQd~l~~~~ 631 (635)
||++..++||||+|.++.
T Consensus 280 Sr~~~~~~yVq~~l~~~~ 297 (360)
T cd06199 280 SRDQAEKVYVQDRMREQG 297 (360)
T ss_pred ccCCCCCccHHHHHHHhH
Confidence 999888899999998764
No 12
>PRK06214 sulfite reductase; Provisional
Probab=100.00 E-value=3.1e-58 Score=510.29 Aligned_cols=308 Identities=37% Similarity=0.618 Sum_probs=271.6
Q ss_pred CCCCCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEee
Q 006697 285 GNASFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHT 364 (635)
Q Consensus 285 ~~~~~~~~~p~~a~V~~~~~L~~~~~~r~~~hie~di~~~~l~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~ 364 (635)
+...|+..+||.++|+.|++|++++++|+++||+||+++++++|+|||||+|||+|+++.|+++|++||++++.++
T Consensus 159 ~~~~~~~~~p~~a~v~~n~~Lt~~~~~~~~~hle~dl~~~~l~Y~~GD~l~V~P~N~~~~V~~~l~~lgl~~~~~~---- 234 (530)
T PRK06214 159 GPLGTSRDNPVEATFLSRRRLNKPGSEKETWHVEIDLAGSGLDYEVGDSLGLFPANDPALVDAVIAALGAPPEFPI---- 234 (530)
T ss_pred cCCccCcCCCEEEEEEeEEEcCCCCCCceEEEEEEecCCCCCccCCCCEEEEeccCCHHHHHHHHHHhCCCccCcc----
Confidence 3445788999999999999999999999999999999988999999999999999999999999999999986432
Q ss_pred CCCCCCCCCCCCCCCCCCcccHHHHHhhhhccCCcccHHHHHHHHHhCCCHHHHHHHhhccCCCChhHHHHHHHhcCCCH
Q 006697 365 DNEDGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSL 444 (635)
Q Consensus 365 ~~~~~~~~~~~~~~pfp~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~d~~~k~~L~~l~s~~~~~~y~~~i~~~~~sl 444 (635)
.++|++++|++|+||+++| +.+|+.|+.+++++. |++|+.|++.++.+.. ...+++
T Consensus 235 -----------------~~~tlr~~L~~~~Dl~~~p-~~~~~~la~~~~~~~-~~~l~~L~~~~~~~~~-----~~~~~v 290 (530)
T PRK06214 235 -----------------GGKTLREALLEDVSLGPAP-DGLFELLSYITGGAA-RKKARALAAGEDPDGD-----AATLDV 290 (530)
T ss_pred -----------------CCccHHHHHHHheeccCCC-HHHHHHHHHhCCcHH-HHHHHHhhcccChhhh-----hhhCcH
Confidence 2689999999999999965 889999999998876 7888888654433321 234689
Q ss_pred HHHHHhCCCCCCChhhHHHHhcCCCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHh-hcCCCCCCCC
Q 006697 445 LEVMAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGD 523 (635)
Q Consensus 445 ~dvl~~f~s~~~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~ 523 (635)
+|+|++||++++|+++|++.+ |+++||+|||||+|..+++.++|+|+++.+.. .++.+.|+||+||+ ++++|
T Consensus 291 ldvL~~fp~~~~~~~~lle~l-p~l~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~G----- 363 (530)
T PRK06214 291 LAALEKFPGIRPDPEAFVEAL-DPLQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAPG----- 363 (530)
T ss_pred HHHHHhCCCCCCCHHHHHhhc-CCCCcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCCC-----
Confidence 999999999999999999999 99999999999999877889999999998774 56778899999998 48999
Q ss_pred ccEEEEEeeCC-CCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHH
Q 006697 524 CSWAPIFIRPS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEE 602 (635)
Q Consensus 524 ~~~v~i~~~~g-~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~ 602 (635)
+.|.|+++.+ +|++|.+..+|+||||+||||||||||||+|.+.. ..++++||||||+.+.|++|++||++|.+
T Consensus 364 -d~V~v~i~~~~gF~lp~~~~~PiImIg~GTGIAPfrsfLq~r~~~~----~~g~~~LffG~R~~~~D~ly~dEL~~l~~ 438 (530)
T PRK06214 364 -TRVRVYVQKAHGFALPADPNTPIIMVGPGTGIAPFRAFLHERAATK----APGRNWLFFGHQRSATDFFYEDELNGLKA 438 (530)
T ss_pred -CEEEEEecCCCCCccCCCCCCCEEEEcCCeeHHHHHHHHHHHHHhc----CCCCeEEEEEecCChhhhHHHHHHHHHHH
Confidence 8999988554 59999877889999999999999999999987632 35799999999887779999999999999
Q ss_pred cCCccEEEEEEecCCCCcccchhHHhcccc
Q 006697 603 EGVISELILAFSREGSQKEYVQHKMMDKVS 632 (635)
Q Consensus 603 ~g~~~~l~~a~SR~~~~k~yVQd~l~~~~~ 632 (635)
.+.+++++++|||++..|+||||+|.++.+
T Consensus 439 ~g~l~~l~~afSRd~~~k~YVQ~~L~e~~~ 468 (530)
T PRK06214 439 AGVLTRLSLAWSRDGEEKTYVQDRMRENGA 468 (530)
T ss_pred hCCceEEEEEEecCCCCCCchhhHHHHHHH
Confidence 999989999999999889999999987643
No 13
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=100.00 E-value=1.5e-49 Score=398.96 Aligned_cols=218 Identities=44% Similarity=0.783 Sum_probs=190.3
Q ss_pred CCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeCCC
Q 006697 288 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 367 (635)
Q Consensus 288 ~~~~~~p~~a~V~~~~~L~~~~~~r~~~hie~di~~~~l~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 367 (635)
||+.++||.|+|+++++|++++++|+|+||+||+++++++|+|||||+|||+|+++.|++++++||+++|+.|.++....
T Consensus 2 ~~~~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~~l~Y~pGD~l~V~P~N~~~~V~~~l~~lgl~~d~~v~~~~~~~ 81 (219)
T PF00667_consen 2 PYSRKNPFPATVLENRRLTSPGSDRSTRHIELDLSDSGLSYQPGDHLGVYPPNDPEEVERLLKRLGLDPDEPVTLKPKEQ 81 (219)
T ss_dssp SHBTTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTSTG---TT-EEEEE-SSEHHHHHHHHHHHTSGTTSEEEEEESST
T ss_pred CcCCCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCCCCcccCCCEEEEEccCCHHHHHHHHHHhCCCcceEEEEEeccc
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHhhhhccCCcccHHHHHHHHHhCCCHHHHHHHhhccCCCChhHHHHHHHhcCCCHHHH
Q 006697 368 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 447 (635)
Q Consensus 368 ~~~~~~~~~~~pfp~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~d~~~k~~L~~l~s~~~~~~y~~~i~~~~~sl~dv 447 (635)
. .....|||.|+|++++|++|+||+++|+|.+|+.||.||+|+.+|++|+.|++.+|++.|.+|+...++|++|+
T Consensus 82 ~-----~~~~~~~~~~~tl~~~l~~~~Di~~~p~~~~l~~la~~~~~~~~k~~L~~l~~~~~~~~~~~~~~~~~~t~~di 156 (219)
T PF00667_consen 82 N-----NSVKPPFPSPITLRDLLTHYLDITSPPSRSFLRALAEFATDEEEKERLLELASDEGKDDYKDYIWRERRTLLDI 156 (219)
T ss_dssp T-----SSCCSSSSSSEEHHHHHHHTB-TSSB--HHHHHHHHCTBSSHHHHHHHHHCTSSHHHHHHHHHTTTTTHCHHHH
T ss_pred c-----cccccccccceeeeeeeeeeeecccccccceeeeeeecCCCHHHHHHHHHhcchhhhhhhhhhhhcccCcHHHH
Confidence 3 13577999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCChhhHHHHhcCCCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchH
Q 006697 448 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTW 511 (635)
Q Consensus 448 l~~f~s~~~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~ 511 (635)
|.+||++++|+++|++++ |+++||+|||||||..+++.++|||++|+++++.|+.+.|+||+|
T Consensus 157 l~~fps~~~pl~~ll~~l-p~l~PR~YSIsSS~~~~p~~v~ltv~vv~~~~~~g~~r~G~cS~y 219 (219)
T PF00667_consen 157 LEDFPSCKPPLEELLELL-PPLQPRYYSISSSPLVHPNKVHLTVSVVEYPTPRGRIRRGVCSSY 219 (219)
T ss_dssp HHHSTTBTC-HHHHHHHS--B---EEEEB-S-TTTSTTEEEEEEEE-EEECTTSSEEE-HHHHH
T ss_pred HhhCcccCCCHHHhhhhC-CCCCCcceeecccccCCCCEEEEEEEEEEEecCCCCeeEeeCCCC
Confidence 999999999999999999 999999999999999999999999999999999999999999998
No 14
>PRK09004 FMN-binding protein MioC; Provisional
Probab=100.00 E-value=1.5e-33 Score=265.09 Aligned_cols=144 Identities=25% Similarity=0.320 Sum_probs=130.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~ 162 (635)
|++|+|+|||||||||.+|++|++.+.++ |+.++++++.+ .++ +.+++.+||++||||+|++|+|+..|+
T Consensus 1 M~~i~I~ygS~tGnae~~A~~l~~~~~~~--g~~~~~~~~~~--~~~------l~~~~~li~~~sT~G~Ge~p~~~~~f~ 70 (146)
T PRK09004 1 MADITLISGSTLGGAEYVADHLAEKLEEA--GFSTETLHGPL--LDD------LSASGLWLIVTSTHGAGDLPDNLQPFF 70 (146)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHHc--CCceEEeccCC--HHH------hccCCeEEEEECCCCCCCCChhHHHHH
Confidence 46899999999999999999999999988 88888887654 344 788999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecceeecCCC--CchHHHHHHHHHHHHHH
Q 006697 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPEL 239 (635)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~--~~e~~f~~W~~~l~~~L 239 (635)
++|++...+ |++++|+||||||++|++||.+++.++++|+++||+++.+++++|++. ..|++|++|.+.+|..|
T Consensus 71 ~~L~~~~~~---l~g~~~aVfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~~~~~~ 146 (146)
T PRK09004 71 EELQEQKPD---LSQVRFAAIGIGSSEYDTFCGAIDKLEQLLKAKGAKQIGETLKIDVLQHPIPEDPAEEWLKSWINLL 146 (146)
T ss_pred HHHHhcCCC---CCCCEEEEEeecCCCHHHHhHHHHHHHHHHHHcCCeEeeccEEEeCCCCCCchhHHHHHHHHHHHhC
Confidence 999875433 999999999999999999999999999999999999999999999875 47899999999988764
No 15
>PRK08105 flavodoxin; Provisional
Probab=100.00 E-value=3.8e-33 Score=263.31 Aligned_cols=145 Identities=23% Similarity=0.357 Sum_probs=130.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~ 162 (635)
|++|+|+|||||||||.+|++|++.+.+. |++++++++++++... +.+++.+||++||||+|+||+|+..|+
T Consensus 1 m~~i~I~YgS~tGnte~~A~~l~~~l~~~--g~~~~~~~~~~~~~~~------~~~~~~vi~~~sT~G~Ge~p~~~~~f~ 72 (149)
T PRK08105 1 MAKVGIFVGTVYGNALLVAEEAEAILTAQ--GHEVTLFEDPELSDWQ------PYQDELVLVVTSTTGQGDLPDSIVPLF 72 (149)
T ss_pred CCeEEEEEEcCchHHHHHHHHHHHHHHhC--CCceEEechhhCCchh------cccCCeEEEEECCCCCCCCChhHHHHH
Confidence 45899999999999999999999999988 8899999988765322 456789999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecceeecCCC--CchHHHHHHHHHHHHHH
Q 006697 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPEL 239 (635)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~--~~e~~f~~W~~~l~~~L 239 (635)
++|++... .|++++|||||||||+|++||.+++.++++|+++||+++.+++++|++. +.|+.|++|.++ |..+
T Consensus 73 ~~l~~~~~---~l~~~~~avfGlGds~Y~~fc~~~~~ld~~l~~lGa~~v~~~~~~D~~~~~~~e~~~~~W~~~-~~~~ 147 (149)
T PRK08105 73 QALKDTAG---YQPNLRYGVIALGDSSYDNFCGAGKQFDALLQEQGAKRVGERLEIDACETPEPEVEANPWVEQ-WGTL 147 (149)
T ss_pred HHHHhcCc---ccCCCEEEEEeeecCCHHHHHHHHHHHHHHHHHCCCeEeeccEeeeCCCCCChHHHHHHHHHH-HHHH
Confidence 99987422 3999999999999999999999999999999999999999999999876 589999999998 7654
No 16
>PRK05723 flavodoxin; Provisional
Probab=100.00 E-value=6.2e-33 Score=261.98 Aligned_cols=145 Identities=23% Similarity=0.263 Sum_probs=126.1
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhcc--CCeEEEEEecCCCCCCChhHHHH
Q 006697 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKK--ETLAFFMVATYGDGEPTDNAARF 161 (635)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~--~~~vif~~sTyg~G~~p~na~~F 161 (635)
++|.|+|||||||||.+|++|++.+.++ |+++.++. ..+..+ +.. .+.+||++||||+|+||+|+..|
T Consensus 1 ~~i~I~ygS~tG~ae~~A~~la~~l~~~--g~~~~~~~--~~~~~~------~~~~~~~~li~~~sT~G~Ge~Pd~~~~f 70 (151)
T PRK05723 1 MKVAILSGSVYGTAEEVARHAESLLKAA--GFEAWHNP--RASLQD------LQAFAPEALLAVTSTTGMGELPDNLMPL 70 (151)
T ss_pred CeEEEEEEcCchHHHHHHHHHHHHHHHC--CCceeecC--cCCHhH------HHhCCCCeEEEEECCCCCCCCchhHHHH
Confidence 5899999999999999999999999877 77665543 233333 333 37899999999999999999999
Q ss_pred HHHHhcCCCCCCCCCCceEEEEEecCcch-hHHHHHHHHHHHHHHHCCCEEeecceeecCCC--CchHHHHHHHHHHHHH
Q 006697 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPE 238 (635)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~--~~e~~f~~W~~~l~~~ 238 (635)
+++|++... ..|++++||||||||++| ++||.+++.++++|+++||+|+.+++++|++. ++|++|++|++.+|++
T Consensus 71 ~~~L~~~~~--~~l~~~~~aVfGLGDs~Y~~~Fc~a~~~ld~~L~~lGA~rv~~~~~~D~~~~~~~e~~~~~W~~~~~~~ 148 (151)
T PRK05723 71 YSAIRDQLP--AAWRGLPGAVIALGDSSYGDTFCGGGEQMRELFAELGVREVQPMLRLDASETVTPETDAEPWLAEFAAA 148 (151)
T ss_pred HHHHHhcCc--cCCCCCEEEEEeEeCCcchHHHhHHHHHHHHHHHHCCCcEeeccEEeecCCCCChHHHHHHHHHHHHHH
Confidence 999986432 149999999999999999 89999999999999999999999999999884 6899999999999988
Q ss_pred HH
Q 006697 239 LD 240 (635)
Q Consensus 239 L~ 240 (635)
|.
T Consensus 149 l~ 150 (151)
T PRK05723 149 LK 150 (151)
T ss_pred hc
Confidence 73
No 17
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.98 E-value=1.7e-31 Score=285.58 Aligned_cols=216 Identities=29% Similarity=0.449 Sum_probs=178.5
Q ss_pred CCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeCCC
Q 006697 288 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 367 (635)
Q Consensus 288 ~~~~~~p~~a~V~~~~~L~~~~~~r~~~hie~di~~~~l~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 367 (635)
.|..++||.++|+.|.+|+.++....++||+|+.++ .+.|++|.++.|.|+...
T Consensus 84 ~~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~-~~~f~~GQfv~I~~~g~~------------------------- 137 (367)
T PLN03115 84 KFRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTEG-EIPYREGQSIGVIPDGID------------------------- 137 (367)
T ss_pred eeccCCCeEEEEEeecccccCCCCCceEEEEEcCCC-CCCcCCCCEEEEEcCCcC-------------------------
Confidence 478899999999999999998877899999999765 799999999999664210
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHhhhhccCCcccHHHHHHHHHhCCCHHHHHHHhhccCCCChhHHHHHHHhcCCCHHHH
Q 006697 368 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 447 (635)
Q Consensus 368 ~~~~~~~~~~~pfp~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~d~~~k~~L~~l~s~~~~~~y~~~i~~~~~sl~dv 447 (635)
.+|
T Consensus 138 -----------------------------------------------------------~~g------------------ 140 (367)
T PLN03115 138 -----------------------------------------------------------KNG------------------ 140 (367)
T ss_pred -----------------------------------------------------------CCC------------------
Confidence 000
Q ss_pred HHhCCCCCCChhhHHHHhcCCCCccccccCCCCCC---CCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCc
Q 006697 448 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDC 524 (635)
Q Consensus 448 l~~f~s~~~p~~~ll~~~~p~l~pR~YSIsSsp~~---~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~ 524 (635)
.+..+|+|||||+|.. +++.++|+|+++.|.+++|+...|+||+||+++++|
T Consensus 141 -------------------~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~~L~~Lk~G------ 195 (367)
T PLN03115 141 -------------------KPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSNFLCDLKPG------ 195 (367)
T ss_pred -------------------CcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHhhHhhCCCc------
Confidence 1235799999999843 256899999998888777777899999999999999
Q ss_pred cEEEEEeeCCCC-cCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcC-CCCCcEEEEEeecCCCcccccHHHHHHHHH
Q 006697 525 SWAPIFIRPSNF-KLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNFEE 602 (635)
Q Consensus 525 ~~v~i~~~~g~F-~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g-~~~~~~~LffG~R~~~~d~ly~del~~~~~ 602 (635)
+.|.|.+|.|.| .+|.++.+|+||||+|||||||||||+++....... ...++++||||||+.+ |++|.+||++|++
T Consensus 196 d~V~v~GP~G~~fllp~~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~~~~v~Lf~G~R~~~-dlly~dELe~l~~ 274 (367)
T PLN03115 196 AEVKITGPVGKEMLMPKDPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSS-SLLYKEEFEKMKE 274 (367)
T ss_pred CEEEEEeecCCceeCCcCCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccCCCcEEEEEccCCHH-HhhHHHHHHHHHH
Confidence 899999999965 556567789999999999999999999876432111 1247899999999998 9999999999998
Q ss_pred cCC-ccEEEEEEecCCC----CcccchhHHhcccc
Q 006697 603 EGV-ISELILAFSREGS----QKEYVQHKMMDKVS 632 (635)
Q Consensus 603 ~g~-~~~l~~a~SR~~~----~k~yVQd~l~~~~~ 632 (635)
... +++++.++||++. .++||||+|.++++
T Consensus 275 ~~p~~f~v~~a~SR~~~~~~G~kgyVqd~i~e~~e 309 (367)
T PLN03115 275 KAPENFRLDFAVSREQTNAKGEKMYIQTRMAEYAE 309 (367)
T ss_pred hCCCCEEEEEEEcCCCcccCCcceeehhHHHHHHH
Confidence 754 8899999999875 57899999987653
No 18
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.95 E-value=3.4e-27 Score=243.99 Aligned_cols=156 Identities=51% Similarity=0.938 Sum_probs=134.6
Q ss_pred CccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEeeCC-CCcCCCCCCCcEEE
Q 006697 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS-NFKLPANPSVPIIM 548 (635)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~g-~F~lp~~~~~piIm 548 (635)
.+|+|||+|+|...++.++|+|+.+.++.+.+..+.|.+|+||+++++| +.|.|.+|.| .|.++.+..+|+||
T Consensus 47 ~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~~~G~~S~~L~~lk~G------d~v~v~~p~G~~f~l~~~~~~~~vl 120 (267)
T cd06182 47 QPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRIRKGVCSNFLAGLQLG------AKVTVFIRPAPSFRLPKDPTTPIIM 120 (267)
T ss_pred CCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCeeccchhHHHhhCCCC------CEEEEEEecCCcccCCCCCCCCEEE
Confidence 4689999999865568999999998877666666789999999999999 8999999999 99998776789999
Q ss_pred EecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEEecCCCC-cccchhHH
Q 006697 549 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQ-KEYVQHKM 627 (635)
Q Consensus 549 Ig~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~SR~~~~-k~yVQd~l 627 (635)
||+|||||||++|+++++....++...++++||||+|+.+.|++|++||++|++.+.++++++++||++.. ++|||+.+
T Consensus 121 IAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r~~~~d~~~~del~~~~~~~~~~~~~~~~S~~~~~~~~~v~~~l 200 (267)
T cd06182 121 VGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCRNFASDYLYREELQEALKDGALTRLDVAFSREQAEPKVYVQDKL 200 (267)
T ss_pred EecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCCCCcccccHHHHHHHHHhCCCcceEEEEEccCCCCCceehHHHH
Confidence 99999999999999998764322224579999999999933999999999999988899999999998764 78999988
Q ss_pred hccc
Q 006697 628 MDKV 631 (635)
Q Consensus 628 ~~~~ 631 (635)
.+.+
T Consensus 201 ~~~~ 204 (267)
T cd06182 201 KEHA 204 (267)
T ss_pred HHhH
Confidence 6543
No 19
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.95 E-value=3.4e-26 Score=249.78 Aligned_cols=212 Identities=23% Similarity=0.404 Sum_probs=170.8
Q ss_pred CCCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeCCC
Q 006697 288 SFDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNE 367 (635)
Q Consensus 288 ~~~~~~p~~a~V~~~~~L~~~~~~r~~~hie~di~~~~l~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~ 367 (635)
-|...+|+.++|+.+++|+.......++||.|+.++..+.|+||.++.|.++...
T Consensus 136 ~~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~~~~~pGQfv~l~~pg~~------------------------- 190 (411)
T TIGR03224 136 LYGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHPFPVLEGQSIGILPPGTD------------------------- 190 (411)
T ss_pred cccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCcCCccCCcEEEEecCCcC-------------------------
Confidence 3678889999999999999876667899999998766789999999998653210
Q ss_pred CCCCCCCCCCCCCCCcccHHHHHhhhhccCCcccHHHHHHHHHhCCCHHHHHHHhhccCCCChhHHHHHHHhcCCCHHHH
Q 006697 368 DGTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEV 447 (635)
Q Consensus 368 ~~~~~~~~~~~pfp~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~d~~~k~~L~~l~s~~~~~~y~~~i~~~~~sl~dv 447 (635)
.++
T Consensus 191 -----------------------------------------------------------~~g------------------ 193 (411)
T TIGR03224 191 -----------------------------------------------------------ASG------------------ 193 (411)
T ss_pred -----------------------------------------------------------cCC------------------
Confidence 000
Q ss_pred HHhCCCCCCChhhHHHHhcCCCCccccccCCCCCCC---CCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCc
Q 006697 448 MAEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFA---PDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDC 524 (635)
Q Consensus 448 l~~f~s~~~p~~~ll~~~~p~l~pR~YSIsSsp~~~---~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~ 524 (635)
.+..+|+|||+|+|... .+.++|+|+++.. ..+|+.+.|.+|+||+++++|
T Consensus 194 -------------------~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~~-~~~g~~~~G~~S~~L~~lk~G------ 247 (411)
T TIGR03224 194 -------------------KPHYARMYSVASPRNGERPGYNNLALTVKRVTT-DHQGNAVRGVASNYLCDLKKG------ 247 (411)
T ss_pred -------------------CcCcceeeeecCCCCccCCCCCEEEEEEEEEEe-cCCCCcCcccchhHHhcCCCc------
Confidence 11247999999987321 2479999999863 345667789999999999999
Q ss_pred cEEEEEeeCCC-CcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHc
Q 006697 525 SWAPIFIRPSN-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE 603 (635)
Q Consensus 525 ~~v~i~~~~g~-F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~ 603 (635)
++|.|.+|.|. |.+|..+.+|+||||+||||||||||++++......+ ..++++||||+|+.+ |++|.+||+++.+.
T Consensus 248 d~v~v~GP~G~~f~lp~~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~-~~~~v~L~~G~Rt~~-dl~y~~eL~~l~~~ 325 (411)
T TIGR03224 248 DKVQVIGPFGSTFLMPNHPESSIMMICTGTGSAPMRAMTERRRRRRDHG-EGGKLMLFFGARTKE-ELPYFGPLQKLPKD 325 (411)
T ss_pred CEEEEEeccCCcccCCCCCCCCEEEEecccCcHHHHHHHHHHHHHhhcC-CCCCEEEEEecCccc-cchHHHHHHHHHhc
Confidence 99999999995 7777655689999999999999999999987643222 468999999999999 99999999999875
Q ss_pred CCccEEEEEEecCCC-CcccchhHHhccc
Q 006697 604 GVISELILAFSREGS-QKEYVQHKMMDKV 631 (635)
Q Consensus 604 g~~~~l~~a~SR~~~-~k~yVQd~l~~~~ 631 (635)
.. ++++++||+++ .++||||.|+++.
T Consensus 326 ~~--~~~~~~sr~~~~~~g~V~d~l~~~~ 352 (411)
T TIGR03224 326 FI--DINFAFSRTPEQPKRYVQDAIRERA 352 (411)
T ss_pred Cc--eEEEEeccCCccCcccHhhHHHHhH
Confidence 53 56779999654 6899999988754
No 20
>PF00258 Flavodoxin_1: Flavodoxin; InterPro: IPR008254 This domain is found in a number of proteins including flavodoxin and nitric-oxide synthase. Flavodoxins are electron-transfer proteins that function in various electron transport systems. They bind one FMN molecule, which serves as a redox-active prosthetic group [] and are functionally interchangeable with ferredoxins. They have been isolated from prokaryotes, cyanobacteria, and some eukaryotic algae. Nitric oxide synthase (1.14.13.39 from EC) produces nitric oxide from L-arginie and NADPH. Nitric oxide acts as a messenger molecule in the body.; GO: 0010181 FMN binding, 0016491 oxidoreductase activity; PDB: 2WC1_A 2FVX_A 2FOX_A 6NUL_A 1FVX_A 2FAX_A 1FLN_A 1FLA_A 4NLL_A 2FDX_A ....
Probab=99.94 E-value=4.4e-27 Score=220.12 Aligned_cols=138 Identities=39% Similarity=0.620 Sum_probs=121.6
Q ss_pred EEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHH-HHHHHHh
Q 006697 88 VFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAA-RFYKWFT 166 (635)
Q Consensus 88 I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~-~F~~~L~ 166 (635)
|+|+|+|||||++|+.|+++|.++ |+.++++++++++.. ..++..++.+||++||||+|++|+++. .|.+|+.
T Consensus 1 I~Y~S~tG~te~~A~~ia~~l~~~--g~~~~~~~~~~~~~~----~~~~~~~~~~i~~~sT~~~g~~p~~~~~~~~~~~~ 74 (143)
T PF00258_consen 1 IVYGSMTGNTEKMAEAIAEGLRER--GVEVRVVDLDDFDDS----PSDLSEYDLLIFGVSTYGEGEPPDNAKEFFEELLE 74 (143)
T ss_dssp EEEETSSSHHHHHHHHHHHHHHHT--TSEEEEEEGGGSCHH----HHHHCTTSEEEEEEEEETTTEESGGGHHHHHHHHH
T ss_pred CEEECCchhHHHHHHHHHHHHHHc--CCceeeechhhhhhh----hhhhhhhceeeEeecccCCCcchhhhhhhhhhccc
Confidence 899999999999999999999988 899999999999843 122889999999999999999999988 5666664
Q ss_pred cCC--CCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecceeecCCC--CchHHHHHH
Q 006697 167 EGN--DRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAW 231 (635)
Q Consensus 167 ~~~--~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~--~~e~~f~~W 231 (635)
... .....+++++|+|||+||+.|..||.++|.++++|+++|++++.|++++|+.. +.+++|++|
T Consensus 75 ~~~~~~~~~~l~~~~~avfg~Gd~~~~~f~~~~k~l~~~l~~~G~~~~~~~~~~d~~~~~~~e~~~~~W 143 (143)
T PF00258_consen 75 LKGKELSKPDLKGKKYAVFGLGDSGYGGFCAAAKKLDERLEELGAKRVGPLLEIDEAPSDDLEEDFEEW 143 (143)
T ss_dssp HHHHGGGGSHCTTCEEEEEEEEETTSSTTTHHHHHHHHHHHHTTEEEESSSEEEETTTHGGHHHHHHHH
T ss_pred cccccccccccccceeeeeecCCccchhhhhHHHHHHHHHHHCCCEEEECcEEEecCCCcChHHHHhCC
Confidence 321 01134899999999999999988999999999999999999999999999987 789999999
No 21
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.94 E-value=3.8e-25 Score=231.35 Aligned_cols=135 Identities=32% Similarity=0.637 Sum_probs=115.9
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEe-eCCCCcCCCCCCCcEEEE
Q 006697 471 PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI-RPSNFKLPANPSVPIIMV 549 (635)
Q Consensus 471 pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~-~~g~F~lp~~~~~piImI 549 (635)
+|+|||+|+|. .+.++|+|+.+. .|.+|+||+++++| +.|.+.+ +.|.|.++ +..+|+|||
T Consensus 100 ~R~YSias~p~--~g~l~l~Vk~~~---------~G~~S~~L~~l~~G------d~v~v~~~~~g~F~~~-~~~~~lvlI 161 (289)
T cd06201 100 PRFYSLASSSS--DGFLEICVRKHP---------GGLCSGYLHGLKPG------DTIKAFIRPNPSFRPA-KGAAPVILI 161 (289)
T ss_pred CceEecCCCCC--CCeEEEEEEeCC---------CccchhhHhhCCCc------CEEEEEeccCCCccCC-CCCCCEEEE
Confidence 58999999984 478999998743 69999999999999 8999986 56699987 456899999
Q ss_pred ecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEEecCCCCcccchhHHhc
Q 006697 550 GPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYVQHKMMD 629 (635)
Q Consensus 550 g~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~SR~~~~k~yVQd~l~~ 629 (635)
|+|||||||+|||+++. ..++++||||+|+++.|.+|++||++|++.+.+++++.++||++ .++|||+.+..
T Consensus 162 AgGtGIaP~~s~l~~~~-------~~~~v~L~~g~r~~~~d~~~~~eL~~l~~~~~~~~~~~~~s~~~-~~g~v~~~l~~ 233 (289)
T cd06201 162 GAGTGIAPLAGFIRANA-------ARRPMHLYWGGRDPASDFLYEDELDQYLADGRLTQLHTAFSRTP-DGAYVQDRLRA 233 (289)
T ss_pred ecCcCHHHHHHHHHhhh-------ccCCEEEEEEecCcccchHHHHHHHHHHHcCCCceEEEEECCCC-CcccchhHHHH
Confidence 99999999999998752 24689999999998558999999999999988888999999975 47899998866
Q ss_pred cc
Q 006697 630 KV 631 (635)
Q Consensus 630 ~~ 631 (635)
..
T Consensus 234 ~~ 235 (289)
T cd06201 234 DA 235 (289)
T ss_pred hH
Confidence 43
No 22
>PRK07308 flavodoxin; Validated
Probab=99.94 E-value=1.2e-25 Score=211.74 Aligned_cols=140 Identities=22% Similarity=0.317 Sum_probs=122.2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~ 162 (635)
++++.|+|+|+|||||++|+.|++.+.+. |+.++++++++.+.++ +.+++.+||++||||+|++|+++.+|+
T Consensus 1 m~~~~IvY~S~tGnTe~iA~~ia~~l~~~--g~~~~~~~~~~~~~~~------l~~~d~vi~g~~t~g~G~~p~~~~~fl 72 (146)
T PRK07308 1 MALAKIVYASMTGNTEEIADIVADKLREL--GHDVDVDECTTVDASD------FEDADIAIVATYTYGDGELPDEIVDFY 72 (146)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHHhC--CCceEEEecccCCHhH------hccCCEEEEEeCccCCCCCCHHHHHHH
Confidence 35799999999999999999999999877 8889999999887665 788999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecceeecCCC--CchHHHHHHHHHH
Q 006697 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELV 235 (635)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~--~~e~~f~~W~~~l 235 (635)
++|+... +++++++|||+||+.|+|||.+++.++++|+++|++++.+....|... ...+...+|...|
T Consensus 73 ~~l~~~~-----l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~l 142 (146)
T PRK07308 73 EDLADLD-----LSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAESVKVDLAAEDEDIERLEAFAEEL 142 (146)
T ss_pred HHHhcCC-----CCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 9998754 889999999999999999999999999999999999999888887653 2234444555444
No 23
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.94 E-value=3.5e-25 Score=233.53 Aligned_cols=215 Identities=27% Similarity=0.394 Sum_probs=167.2
Q ss_pred CCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeCCCC
Q 006697 289 FDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNED 368 (635)
Q Consensus 289 ~~~~~p~~a~V~~~~~L~~~~~~r~~~hie~di~~~~l~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~ 368 (635)
|....|+.++|+..+.+++|.+..++++|+|+.+. .+.|++|.++.|.++... . .
T Consensus 19 ~~~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~-~~~f~aGQy~~l~~~~~~--~---------------------~- 73 (307)
T PLN03116 19 YKPKAPYTATIVSVERIVGPKAPGETCHIVIDHGG-NVPYWEGQSYGVIPPGTN--P---------------------K- 73 (307)
T ss_pred ccCCCCEEEEEEeeEEcccCCCCCceEEEEEecCC-CCceecCceEeeeCCCCC--h---------------------h-
Confidence 34577889999999999977776789999999764 689999999988543210 0 0
Q ss_pred CCCCCCCCCCCCCCcccHHHHHhhhhccCCcccHHHHHHHHHhCCCHHHHHHHhhccCCCChhHHHHHHHhcCCCHHHHH
Q 006697 369 GTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVM 448 (635)
Q Consensus 369 ~~~~~~~~~~pfp~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~d~~~k~~L~~l~s~~~~~~y~~~i~~~~~sl~dvl 448 (635)
..|
T Consensus 74 ----------------------------------------------------------~~g------------------- 76 (307)
T PLN03116 74 ----------------------------------------------------------KPG------------------- 76 (307)
T ss_pred ----------------------------------------------------------hcC-------------------
Confidence 000
Q ss_pred HhCCCCCCChhhHHHHhcCCCCccccccCCCCCCC---CCeEEEEEEEEEecCCCC---C-cccCccchHHhhcCCCCCC
Q 006697 449 AEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRFA---PDRVHVTCALVYGPTPTG---R-IHKGVCSTWMKNAIPLEGN 521 (635)
Q Consensus 449 ~~f~s~~~p~~~ll~~~~p~l~pR~YSIsSsp~~~---~~~i~ltv~~v~~~~~~g---~-~~~G~~S~~L~~l~~g~~~ 521 (635)
.+...|+|||||+|... ...++|+|+++.+..+.. . ...|.+|+||+++++|
T Consensus 77 ------------------~~~~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~G~~S~~L~~l~~G--- 135 (307)
T PLN03116 77 ------------------APHNVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKKGVCSNFLCDAKPG--- 135 (307)
T ss_pred ------------------CcCCceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccCcchhhhHhhCCCC---
Confidence 12247999999998432 237999999886554421 1 1479999999999999
Q ss_pred CCccEEEEEeeCCCCcC-CC-CCCCcEEEEecCCCchhHHHHHHHHHHHHhc-CCCCCcEEEEEeecCCCcccccHHHHH
Q 006697 522 GDCSWAPIFIRPSNFKL-PA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQD-GAQLGPALLFFGCRNRRMDFIYEDELN 598 (635)
Q Consensus 522 ~~~~~v~i~~~~g~F~l-p~-~~~~piImIg~GTGIAPfrs~lq~r~~~~~~-g~~~~~~~LffG~R~~~~d~ly~del~ 598 (635)
+.|.|.+|.|.|.+ |. +..+|+||||+|||||||+||++++++.... ....++++||||+|+.+ |++|.+||+
T Consensus 136 ---d~v~v~gP~G~f~~~~~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~~~~~~v~L~~g~R~~~-d~~~~deL~ 211 (307)
T PLN03116 136 ---DKVQITGPSGKVMLLPEEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFKFGGLAWLFLGVANSD-SLLYDDEFE 211 (307)
T ss_pred ---CEEEEEEecCCceeCCCCCCCCcEEEEecCccHHHHHHHHHHHHhhccccccCCCcEEEEEecCCcc-cchHHHHHH
Confidence 89999999998876 43 4567999999999999999999988653210 11247899999999998 999999999
Q ss_pred HHHHcCC-ccEEEEEEecCCC----CcccchhHHhcc
Q 006697 599 NFEEEGV-ISELILAFSREGS----QKEYVQHKMMDK 630 (635)
Q Consensus 599 ~~~~~g~-~~~l~~a~SR~~~----~k~yVQd~l~~~ 630 (635)
+|++.+. +++++.++||++. .++|||+.|.+.
T Consensus 212 ~l~~~~~~~~~~~~~~sr~~~~~~g~~g~v~~~l~~~ 248 (307)
T PLN03116 212 RYLKDYPDNFRYDYALSREQKNKKGGKMYVQDKIEEY 248 (307)
T ss_pred HHHHhCCCcEEEEEEEccCCcccCCCccchhhHHHHH
Confidence 9998875 7889999999765 368999988764
No 24
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.93 E-value=1.9e-24 Score=225.75 Aligned_cols=214 Identities=28% Similarity=0.423 Sum_probs=169.0
Q ss_pred CCCCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCCHHHHHHHHHHhCCCCccEEEEeeCCCC
Q 006697 289 FDIHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENCDETVEEAGKLLGQSLELLFSLHTDNED 368 (635)
Q Consensus 289 ~~~~~p~~a~V~~~~~L~~~~~~r~~~hie~di~~~~l~Y~~GD~l~I~p~N~~~~V~~~l~~l~l~~~~~~~~~~~~~~ 368 (635)
|-+++|+.++|+..+.|+.+.+..++++++|+.. ..+.|+||.++.|.++....
T Consensus 3 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~pGQ~v~l~~~~~~~------------------------- 56 (286)
T cd06208 3 YKPKNPLIGKVVSNTRLTGPDAPGEVCHIVIDHG-GKLPYLEGQSIGIIPPGTDA------------------------- 56 (286)
T ss_pred CCCCCCeEEEEEeceeccCCCCCcceEEEEEeCC-CcccccCCceEEEECCCcch-------------------------
Confidence 3457788999999999997666678999999974 57899999999885432100
Q ss_pred CCCCCCCCCCCCCCcccHHHHHhhhhccCCcccHHHHHHHHHhCCCHHHHHHHhhccCCCChhHHHHHHHhcCCCHHHHH
Q 006697 369 GTPRGSSLTPPFPGPCTLRTALARYADILNPPRKAALIALAAHATEPSEAERLKFLSSPQGKDDYSQWVVASQRSLLEVM 448 (635)
Q Consensus 369 ~~~~~~~~~~pfp~p~tl~~~l~~~~Dl~~~p~~~~l~~La~~~~d~~~k~~L~~l~s~~~~~~y~~~i~~~~~sl~dvl 448 (635)
..|
T Consensus 57 ----------------------------------------------------------~~g------------------- 59 (286)
T cd06208 57 ----------------------------------------------------------KNG------------------- 59 (286)
T ss_pred ----------------------------------------------------------hcC-------------------
Confidence 000
Q ss_pred HhCCCCCCChhhHHHHhcCCCCccccccCCCCCC---CCCeEEEEEEEEEecCCCC-CcccCccchHHhhcCCCCCCCCc
Q 006697 449 AEFPSATPPIGVFFAAVAPHLQPRYYSISSSPRF---APDRVHVTCALVYGPTPTG-RIHKGVCSTWMKNAIPLEGNGDC 524 (635)
Q Consensus 449 ~~f~s~~~p~~~ll~~~~p~l~pR~YSIsSsp~~---~~~~i~ltv~~v~~~~~~g-~~~~G~~S~~L~~l~~g~~~~~~ 524 (635)
++..+|+|||||+|.. +++.++|+|+.+.++++.+ ..+.|.+|+||+++++|
T Consensus 60 ------------------~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~~l~~G------ 115 (286)
T cd06208 60 ------------------KPHKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLCDLKPG------ 115 (286)
T ss_pred ------------------CCCCceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHhhCCCC------
Confidence 3345799999999854 2468999999987655543 34569999999999999
Q ss_pred cEEEEEeeCCCCcCC-CCCCCcEEEEecCCCchhHHHHHHHHHHHHhc-CCCCCcEEEEEeecCCCcccccHHHHHHHHH
Q 006697 525 SWAPIFIRPSNFKLP-ANPSVPIIMVGPGTGLAPFRGFLQERMALKQD-GAQLGPALLFFGCRNRRMDFIYEDELNNFEE 602 (635)
Q Consensus 525 ~~v~i~~~~g~F~lp-~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~-g~~~~~~~LffG~R~~~~d~ly~del~~~~~ 602 (635)
+.|.|.+|.|+|.+. .+..+|+||||+|||||||+||++++...... ....++++||||+|+++ |++|++||+++++
T Consensus 116 d~v~v~gP~G~~~~~~~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~~g~r~~~-d~~~~~el~~l~~ 194 (286)
T cd06208 116 DDVQITGPVGKTMLLPEDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLFFGVPNSD-SLLYDDELEKYPK 194 (286)
T ss_pred CEEEEEeecCCcccCCCCCCCCEEEEecCccHHHHHHHHHHHHHhhhcccCCCCCEEEEEEecCcc-chhHHHHHHHHHH
Confidence 899999999977554 34567999999999999999999998763210 11347899999999999 9999999999998
Q ss_pred cC-CccEEEEEEecCCC----CcccchhHHhcc
Q 006697 603 EG-VISELILAFSREGS----QKEYVQHKMMDK 630 (635)
Q Consensus 603 ~g-~~~~l~~a~SR~~~----~k~yVQd~l~~~ 630 (635)
+. .++++++++||++. .++|||+.|.+.
T Consensus 195 ~~~~~~~~~~~~sr~~~~~~g~~g~v~~~i~~~ 227 (286)
T cd06208 195 QYPDNFRIDYAFSREQKNADGGKMYVQDRIAEY 227 (286)
T ss_pred hCCCcEEEEEEEcCCCCCCCCCceehhhHHHHh
Confidence 75 36889999999764 468999988764
No 25
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.92 E-value=6.3e-25 Score=224.40 Aligned_cols=159 Identities=31% Similarity=0.478 Sum_probs=133.6
Q ss_pred CCChhhHHHHhcCC-CCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhh-cCCCCCCCCccEEEEEee
Q 006697 455 TPPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 532 (635)
Q Consensus 455 ~~p~~~ll~~~~p~-l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~ 532 (635)
...+|||+.+..+. ..+|+|||||+|. ++.++|+|+.+... .| ..|.+|+||++ +++| ++|.|.+|
T Consensus 31 ~f~pGQ~v~l~~~~~~~~R~YSIas~p~--~~~l~l~Vk~~~~~--~~--~~G~~S~~L~~~~~~G------d~v~i~gp 98 (245)
T cd06200 31 QWQAGDIAEIGPRHPLPHREYSIASLPA--DGALELLVRQVRHA--DG--GLGLGSGWLTRHAPIG------ASVALRLR 98 (245)
T ss_pred CccCCcEEEecCCCCCCCcceEeccCCC--CCEEEEEEEEeccC--CC--CCeeechhhhhCCCCC------CEEEEEec
Confidence 44689999988442 5789999999985 47899999987531 12 25999999998 5788 89999998
Q ss_pred CC-CCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEE
Q 006697 533 PS-NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 611 (635)
Q Consensus 533 ~g-~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~ 611 (635)
.| .|.+|. ..+|+||||+|||||||+||++++.. + ..++++||||||+.+.|++|.+||++|++.+.++++++
T Consensus 99 ~gg~F~~~~-~~~~~vlIAgGtGIaP~~s~l~~~~~---~--~~~~~~l~~g~r~~~~d~~~~~el~~~~~~~~~~~~~~ 172 (245)
T cd06200 99 ENPGFHLPD-DGRPLILIGNGTGLAGLRSHLRARAR---A--GRHRNWLLFGERQAAHDFFCREELEAWQAAGHLARLDL 172 (245)
T ss_pred CCCcccCCC-CCCCEEEEecCcChHHHHHHHHHHHh---c--cCCCeEEEEecCCccccHhHHHHHHHHHHCCCcceEEE
Confidence 66 898875 56899999999999999999999875 2 23689999999998559999999999999999999999
Q ss_pred EEecCCCCcccchhHHhccc
Q 006697 612 AFSREGSQKEYVQHKMMDKV 631 (635)
Q Consensus 612 a~SR~~~~k~yVQd~l~~~~ 631 (635)
++||++..++|||+.+.++.
T Consensus 173 ~~s~~~~~~~~v~~~l~~~~ 192 (245)
T cd06200 173 AFSRDQAQKRYVQDRLRAAA 192 (245)
T ss_pred EEccCCCCCcchHHHHHHhH
Confidence 99998877899999998654
No 26
>PRK06703 flavodoxin; Provisional
Probab=99.92 E-value=7e-24 Score=200.73 Aligned_cols=147 Identities=18% Similarity=0.240 Sum_probs=129.1
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~ 162 (635)
+++++|+|+|+||||+++|+.|++++.+. |+.++++++++.+.++ +.+++.+||++||||+|++|+++..|+
T Consensus 1 mmkv~IiY~S~tGnT~~iA~~ia~~l~~~--g~~v~~~~~~~~~~~~------l~~~d~viigspt~~~g~~p~~~~~f~ 72 (151)
T PRK06703 1 MAKILIAYASMSGNTEDIADLIKVSLDAF--DHEVVLQEMDGMDAEE------LLAYDGIILGSYTWGDGDLPYEAEDFH 72 (151)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhc--CCceEEEehhhCCHHH------HhcCCcEEEEECCCCCCcCcHHHHHHH
Confidence 46899999999999999999999999877 8889999998887655 889999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecceeecCCC---CchHHHHHHHHHHHHHH
Q 006697 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ---CIEDDFTAWRELVWPEL 239 (635)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~---~~e~~f~~W~~~l~~~L 239 (635)
++|.... +++++++|||+||+.|++||.+++.++++|+++|++++.+....+... ...+.+.+|.+.+.+.+
T Consensus 73 ~~l~~~~-----l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 147 (151)
T PRK06703 73 EDLENID-----LSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQEGLKIELAPETDEDVEKCSNFAIAFAEKF 147 (151)
T ss_pred HHHhcCC-----CCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEcccCeEEecCCCchhHHHHHHHHHHHHHHHH
Confidence 9997654 789999999999999999999999999999999999988877776543 34456778888887766
Q ss_pred HHh
Q 006697 240 DQL 242 (635)
Q Consensus 240 ~~~ 242 (635)
+++
T Consensus 148 ~~~ 150 (151)
T PRK06703 148 AQM 150 (151)
T ss_pred Hhc
Confidence 543
No 27
>PRK12359 flavodoxin FldB; Provisional
Probab=99.90 E-value=1.1e-22 Score=195.70 Aligned_cols=143 Identities=21% Similarity=0.344 Sum_probs=122.8
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHHH
Q 006697 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (635)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~~ 163 (635)
|++.|+|+|+|||||.+|+.|++.+. ...+++.++++++.++ +..++.+||++||||.|++|+++..|++
T Consensus 1 Mki~I~Y~S~TGNTe~vAe~I~~~lg----~~~v~v~~i~~~~~~~------l~~yD~iIlG~pTw~~Gel~~d~~~~~~ 70 (172)
T PRK12359 1 MKIGLFYGSSTCYTEMAAEKIRDIIG----EELVDLHNLKDDPPKL------MEQYDVLILGIPTWDFGEIQEDWEAVWD 70 (172)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhC----CCeEEEEEcccCChhH------HccCCEEEEEecccCCCcCcHHHHHHHH
Confidence 68999999999999999999999873 2247888999988877 8899999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCceEEEEEecCc-ch-hHHHHHHHHHHHHHHHCCCEEeecc---------------------eee-c
Q 006697 164 WFTEGNDRGPWLQQLKFGVFGLGNR-QY-EHFNKIGIVLDEELCKQGGARLVPL---------------------GLG-D 219 (635)
Q Consensus 164 ~L~~~~~~~~~l~~~~~aVFGlGds-~Y-~~f~~~~k~ld~~L~~lGa~~v~~~---------------------g~g-D 219 (635)
.|.... |+|+++|+||+||+ .| ++||.+++.+.++|++.||+.+... |+. |
T Consensus 71 ~l~~~d-----l~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~~s~a~~~~~~~f~gl~lD 145 (172)
T PRK12359 71 QLDDLN-----LEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFTSSKPLTADGQLFVGLALD 145 (172)
T ss_pred HHhhCC-----CCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCcccccceeeEcCCCEEEEEEEc
Confidence 987754 89999999999998 58 9999999999999999999876544 222 3
Q ss_pred CCC---CchHHHHHHHHHHHHHHHH
Q 006697 220 DDQ---CIEDDFTAWRELVWPELDQ 241 (635)
Q Consensus 220 ~~~---~~e~~f~~W~~~l~~~L~~ 241 (635)
+++ -.++++++|.++|-+++..
T Consensus 146 ~~nq~~~t~~ri~~W~~~~~~~~~~ 170 (172)
T PRK12359 146 EVNQYDLSDERIQQWCEQILLEMAE 170 (172)
T ss_pred CCCchhhhHHHHHHHHHHHHHHHHh
Confidence 332 2679999999999887754
No 28
>PRK09271 flavodoxin; Provisional
Probab=99.88 E-value=5.5e-22 Score=189.73 Aligned_cols=142 Identities=16% Similarity=0.180 Sum_probs=118.2
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHHH
Q 006697 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (635)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~~ 163 (635)
|+|+|+|+|+|||||++|+.|++.|.+. |+.+++.++++.+.++ ...++.+++++||++||||.|.+|+++..|++
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~--g~~v~~~~~~~~~~~~--~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~ 76 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEA--GHEVDWVETDVQTLAE--YPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIA 76 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhC--CCeeEEEecccccccc--cccCcccCCEEEEECcccCCCcCCHHHHHHHH
Confidence 6899999999999999999999999988 8888888887766443 22336678999999999999999999999999
Q ss_pred HHhcCCCCCCCCCCceEEEEEecCcch--hHHHHHHHHHHHHHHHCCCEEeecceeecCCC---CchHHHHHHHHHHHHH
Q 006697 164 WFTEGNDRGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ---CIEDDFTAWRELVWPE 238 (635)
Q Consensus 164 ~L~~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~---~~e~~f~~W~~~l~~~ 238 (635)
+|.... .++++++|||+||+.| ++||.+++.++++|+... +..+.+... ...+.+.+|.+++++.
T Consensus 77 ~l~~~~-----~~~k~~avfgsgd~~~~~~~f~~a~~~~~~~l~~~~-----~~l~~~~~p~~~~d~~~~~~~~~~~~~~ 146 (160)
T PRK09271 77 ELAETI-----GKPPNVAVFGTGETQWGEEYYCGAVHRMARFFGSSY-----PRLKIEQMPHGERDAAAIDNWTDKVLAL 146 (160)
T ss_pred HHHHHh-----ccCCeEEEEecCCCCcCccHHHHHHHHHHHHHhccC-----CceeeecCCccchhHHHHHHHHHHHHHH
Confidence 998743 4678999999999999 799999999999997642 334444322 2347889999999888
Q ss_pred H
Q 006697 239 L 239 (635)
Q Consensus 239 L 239 (635)
|
T Consensus 147 ~ 147 (160)
T PRK09271 147 C 147 (160)
T ss_pred h
Confidence 7
No 29
>PRK06756 flavodoxin; Provisional
Probab=99.88 E-value=1.7e-21 Score=183.84 Aligned_cols=137 Identities=21% Similarity=0.290 Sum_probs=117.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~ 162 (635)
+++|+|+|+|+|||||++|+.|++++.+. |+.++++++.+... ..++.+++.+||++||||.|.+|+++..|+
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~--g~~v~~~~~~~~~~-----~~~~~~~d~vi~gspt~~~g~~p~~~~~fl 73 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRET--ENEIEVIDIMDSPE-----ASILEQYDGIILGAYTWGDGDLPDDFLDFY 73 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhc--CCeEEEeehhccCC-----HHHHhcCCeEEEEeCCCCCCCCcHHHHHHH
Confidence 47899999999999999999999999887 88899998876532 123788999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecceeecCCCCchHHHHHHH
Q 006697 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWR 232 (635)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~~~e~~f~~W~ 232 (635)
+.+.... ++++++++||+|++.|.|||.+.+.+.+.|+++|++.+.+.....-. ..++++++|.
T Consensus 74 ~~l~~~~-----l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~~~~~~-p~~~d~~~~~ 137 (148)
T PRK06756 74 DAMDSID-----LTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGLKVELT-PEDEDVEKCL 137 (148)
T ss_pred HHHhcCC-----CCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCeEEecC-CCHHHHHHHH
Confidence 9987644 88999999999999999999999999999999999999887766433 3466665544
No 30
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.86 E-value=1.5e-21 Score=196.42 Aligned_cols=156 Identities=20% Similarity=0.321 Sum_probs=133.3
Q ss_pred CCCChhhHHHHhcCCCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhh-cCCCCCCCCccEEEEEee
Q 006697 454 ATPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 532 (635)
Q Consensus 454 ~~~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~ 532 (635)
.+..+|||+.+.++....|+|||+|.|.. .+.++|+|+.+. .|.+|++|.+ +++| +.|.|.+|
T Consensus 24 ~~~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~l~~~vk~~~---------~G~~s~~l~~~l~~G------~~v~i~gP 87 (224)
T cd06189 24 LDFLAGQYLDLLLDDGDKRPFSIASAPHE-DGEIELHIRAVP---------GGSFSDYVFEELKEN------GLVRIEGP 87 (224)
T ss_pred cccCCCCEEEEEcCCCCceeeecccCCCC-CCeEEEEEEecC---------CCccHHHHHHhccCC------CEEEEecC
Confidence 34578999988867767999999999864 578999998853 5899999986 9999 89999999
Q ss_pred CCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEE
Q 006697 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (635)
Q Consensus 533 ~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a 612 (635)
.|.|.++.+..+++||||+|||||||++++++.... + ...+++|+||+|+.+ |++|++||+++++++.+++++.+
T Consensus 88 ~G~~~~~~~~~~~ivliagG~GiaP~~~~l~~l~~~---~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 162 (224)
T cd06189 88 LGDFFLREDSDRPLILIAGGTGFAPIKSILEHLLAQ---G-SKRPIHLYWGARTEE-DLYLDELLEAWAEAHPNFTYVPV 162 (224)
T ss_pred CccEEeccCCCCCEEEEecCcCHHHHHHHHHHHHhc---C-CCCCEEEEEecCChh-hccCHHHHHHHHHhCCCeEEEEE
Confidence 999988766678999999999999999999998752 2 347899999999998 99999999999998888899999
Q ss_pred EecCCC----CcccchhHHhcc
Q 006697 613 FSREGS----QKEYVQHKMMDK 630 (635)
Q Consensus 613 ~SR~~~----~k~yVQd~l~~~ 630 (635)
+||+++ .++||++.+.+.
T Consensus 163 ~s~~~~~~~g~~g~v~~~l~~~ 184 (224)
T cd06189 163 LSEPEEGWQGRTGLVHEAVLED 184 (224)
T ss_pred eCCCCcCCccccccHHHHHHhh
Confidence 998643 568999887654
No 31
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.86 E-value=1.3e-21 Score=213.33 Aligned_cols=186 Identities=18% Similarity=0.157 Sum_probs=152.8
Q ss_pred hHHHHHHHhhcccccccchhHHHHHHHHHHHHHhhheeeeeccCCCCcCCCCCCCCCCCCCCCccchHHHHhc-----CC
Q 006697 9 LVKFVESALGVSLGDSVTDTVILIATTSFAVVIGLLVLVWKKSSSDRSKEVKPVVPLKPLSAKDEDDEADIAA-----GK 83 (635)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 83 (635)
..++|.++|+++..+ ++++.+||++ ||. +||++.. ++.++|.+ .+
T Consensus 198 ~~~~v~~~l~~l~~~--~l~~~~i~p~-HG~-------i~~~~~~--------------------~~~~~Y~~~~~~~~~ 247 (394)
T PRK11921 198 FSPLVIKKIEEILSL--NLPVDMICPS-HGV-------IWRDNPL--------------------QIVEKYLEWAANYQE 247 (394)
T ss_pred hHHHHHHHHHHHHhc--CCCCCEEEcC-Ccc-------EEeCCHH--------------------HHHHHHHHHhhcCCc
Confidence 456789999999866 7788999999 999 8998653 34444442 57
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHH--hhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 006697 84 TKVTVFYGTQTGTAEGFAKALAEEIK--ARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (635)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~l~~~l~--~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F 161 (635)
++|+|+|+|+|||||++|+.|++++. .. |++++++++.+.+.++ ++.++.+++.+||+|||||.|.+| .+..|
T Consensus 248 ~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~--g~~v~~~~~~~~~~~~--i~~~~~~~d~ii~GspT~~~~~~~-~~~~~ 322 (394)
T PRK11921 248 NQVTILYDTMWNSTRRMAEAIAEGIKKANK--DVTVKLYNSAKSDKND--IITEVFKSKAILVGSSTINRGILS-STAAI 322 (394)
T ss_pred CcEEEEEECCchHHHHHHHHHHHHHhhcCC--CCeEEEEECCCCCHHH--HHHHHHhCCEEEEECCCcCccccH-HHHHH
Confidence 88999999999999999999999998 55 7889999999988766 666778899999999999888885 48889
Q ss_pred HHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecceeecCCC--CchHHHHHHHHHHHHH
Q 006697 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPE 238 (635)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~--~~e~~f~~W~~~l~~~ 238 (635)
++++.... +++|++++|| +|+|+|.+++.+.++|+++|++.+.+.......- ...+.+.+|.+.+.+.
T Consensus 323 l~~l~~~~-----~~~K~~a~FG----sygw~g~a~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~g~~la~~ 392 (394)
T PRK11921 323 LEEIKGLG-----FKNKKAAAFG----SYGWSGESVKIITERLKKAGFEIVNDGIRELWNPDDEALDRCRSFGENFAES 392 (394)
T ss_pred HHHhhccC-----cCCCEEEEEe----cCCCccHHHHHHHHHHHHCCCEEccCcEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 99998765 8899999999 6999999999999999999999998766654432 2345556777666543
No 32
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.85 E-value=2.5e-21 Score=201.98 Aligned_cols=148 Identities=16% Similarity=0.312 Sum_probs=120.4
Q ss_pred ccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEeeCCCCcCCCCCCCcEEEEe
Q 006697 471 PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVG 550 (635)
Q Consensus 471 pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~g~F~lp~~~~~piImIg 550 (635)
.|+|||+|+|.. .+.++|+|++........+...|.+|+||+++++| ++|.|.+|.|.|.++. ..+|+||||
T Consensus 86 ~R~ySias~p~~-~~~l~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~i~gP~G~f~l~~-~~~~~vlIA 157 (283)
T cd06188 86 SRAYSLANYPAE-EGELKLNVRIATPPPGNSDIPPGIGSSYIFNLKPG------DKVTASGPFGEFFIKD-TDREMVFIG 157 (283)
T ss_pred ccccCcCCCCCC-CCeEEEEEEEeccCCccCCCCCceehhHHhcCCCC------CEEEEECccccccccC-CCCcEEEEE
Confidence 499999999864 57899999975422110022369999999999999 8999999999998863 567999999
Q ss_pred cCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEEecCCC------Ccccch
Q 006697 551 PGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS------QKEYVQ 624 (635)
Q Consensus 551 ~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~SR~~~------~k~yVQ 624 (635)
+|||||||++|+++++.. +....+++||||+|+.+ |.+|.+||+++++.+.++++++++||+.. .++||+
T Consensus 158 gGtGItP~~s~l~~~~~~---~~~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~~~~G~v~ 233 (283)
T cd06188 158 GGAGMAPLRSHIFHLLKT---LKSKRKISFWYGARSLK-ELFYQEEFEALEKEFPNFKYHPVLSEPQPEDNWDGYTGFIH 233 (283)
T ss_pred ecccHhHHHHHHHHHHhc---CCCCceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEEEEECCCCccCCCCCcceeec
Confidence 999999999999987652 21236899999999998 99999999999988888889999998541 458999
Q ss_pred hHHhcc
Q 006697 625 HKMMDK 630 (635)
Q Consensus 625 d~l~~~ 630 (635)
+.+.+.
T Consensus 234 ~~~~~~ 239 (283)
T cd06188 234 QVLLEN 239 (283)
T ss_pred HHHHHH
Confidence 877643
No 33
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.85 E-value=1.5e-21 Score=199.75 Aligned_cols=151 Identities=19% Similarity=0.186 Sum_probs=123.0
Q ss_pred CChhhHHHHhcC--C-CCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEee
Q 006697 456 PPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIR 532 (635)
Q Consensus 456 ~p~~~ll~~~~p--~-l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~ 532 (635)
..+|||+.+.++ . ...|+|||+|+|. .+.++|+|+.++ .|.+|+||+++++| ++|.|.+|
T Consensus 31 ~~pGQfv~l~~~~~g~~~~R~ySias~p~--~~~l~~~ik~~~---------~G~~S~~L~~l~~G------d~v~i~gp 93 (248)
T PRK10926 31 FTAGQFTKLGLEIDGERVQRAYSYVNAPD--NPDLEFYLVTVP---------EGKLSPRLAALKPG------DEVQVVSE 93 (248)
T ss_pred CCCCCEEEEEEecCCcEEEeeecccCCCC--CCeEEEEEEEeC---------CCCcChHHHhCCCC------CEEEEecC
Confidence 468999877643 2 2369999999985 357999998864 69999999999999 89999998
Q ss_pred C-CCCcCCCC-CCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcC-CccEE
Q 006697 533 P-SNFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG-VISEL 609 (635)
Q Consensus 533 ~-g~F~lp~~-~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g-~~~~l 609 (635)
. |.|.++.. ..+|+||||+|||||||+||++++... + ...+++||||+|+.+ |++|++||+++++.. ..+++
T Consensus 94 ~~g~f~l~~~~~~~~~vlIagGtGItP~~s~l~~~~~~---~-~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~v 168 (248)
T PRK10926 94 AAGFFVLDEVPDCETLWMLATGTAIGPYLSILQEGKDL---E-RFKNLVLVHAARYAA-DLSYLPLMQELEQRYEGKLRI 168 (248)
T ss_pred CCcceEccCCCCCCeEEEEEeeeeHHHHHHHHHhhHhh---C-CCCcEEEEEeCCcHH-HHHHHHHHHHHHHhCcCCEEE
Confidence 7 46777644 347999999999999999999997542 2 456899999999998 999999999998875 46789
Q ss_pred EEEEecCCC---CcccchhHHh
Q 006697 610 ILAFSREGS---QKEYVQHKMM 628 (635)
Q Consensus 610 ~~a~SR~~~---~k~yVQd~l~ 628 (635)
++++||++. .+++|++.+.
T Consensus 169 ~~~~s~~~~~~~~~G~v~~~i~ 190 (248)
T PRK10926 169 QTVVSRETAPGSLTGRVPALIE 190 (248)
T ss_pred EEEECCCCCCCCcCCccchhhh
Confidence 999998654 3578887664
No 34
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=99.85 E-value=9.2e-21 Score=176.23 Aligned_cols=135 Identities=24% Similarity=0.333 Sum_probs=115.4
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCC-hhHHHHHHH
Q 006697 86 VTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPT-DNAARFYKW 164 (635)
Q Consensus 86 v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p-~na~~F~~~ 164 (635)
|+|+|+|+||||+++|+.|++.+.+. |+.++++++.+.+..+ +..++.+||++|||+.|.+| +++..|+++
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~~--g~~v~~~~~~~~~~~~------l~~~d~iilgspty~~g~~p~~~~~~f~~~ 72 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKEA--GAEVDLLEVADADAED------LLSYDAVLLGCSTWGDEDLEQDDFEPFFEE 72 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHhc--CCeEEEEEcccCCHHH------HhcCCEEEEEcCCCCCCCCCcchHHHHHHH
Confidence 58999999999999999999999887 8899999999887666 77899999999999999999 999999999
Q ss_pred HhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecceeecCCC--CchHHHHHHHHH
Q 006697 165 FTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWREL 234 (635)
Q Consensus 165 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~--~~e~~f~~W~~~ 234 (635)
|.... +++++++|||+|++.|+ ||.+++.++++|+++|++++.+....+... ...+...+|.+.
T Consensus 73 l~~~~-----~~gk~~~vfgt~g~~~~-f~~~~~~~~~~l~~~g~~~v~~~~~~~~~p~~~~~~~~~~~~~~ 138 (140)
T TIGR01753 73 LEDID-----LGGKKVALFGSGDWGYE-FCEAVDDWEERLKEAGATIIAEGLKVDGDPEEEDLDKCREFAKD 138 (140)
T ss_pred hhhCC-----CCCCEEEEEecCCCCch-hhHHHHHHHHHHHHCCCEEecCCeeeecCCCHHHHHHHHHHHHH
Confidence 97643 78999999999999998 999999999999999999998865554332 223344455443
No 35
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.85 E-value=3e-21 Score=206.43 Aligned_cols=154 Identities=19% Similarity=0.284 Sum_probs=130.9
Q ss_pred CChhhHHHHhcCCCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHh-hcCCCCCCCCccEEEEEeeCC
Q 006697 456 PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIRPS 534 (635)
Q Consensus 456 ~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~i~~~~g 534 (635)
..+|||+.+.+|....|+|||+|+|.. .+.++|+|+.+. .|.+|+||. .+++| +.|.|.+|.|
T Consensus 132 ~~pGQfv~l~~~~~~~R~ySias~p~~-~~~l~~~ik~~~---------~G~~s~~l~~~l~~G------~~v~v~gP~G 195 (339)
T PRK07609 132 YLAGQYIEFILKDGKRRSYSIANAPHS-GGPLELHIRHMP---------GGVFTDHVFGALKER------DILRIEGPLG 195 (339)
T ss_pred cCCCCeEEEECCCCceeeeecCCCCCC-CCEEEEEEEecC---------CCccHHHHHHhccCC------CEEEEEcCce
Confidence 468999998767667899999999864 578999999754 689999997 49999 8999999999
Q ss_pred CCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEEe
Q 006697 535 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFS 614 (635)
Q Consensus 535 ~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~S 614 (635)
.|.++....+|+||||+|||||||+||+++... .+ ...+++||||+|+.+ |++|+++|++|+++..+++++.++|
T Consensus 196 ~~~~~~~~~~~ivlIagGtGiaP~~s~l~~~~~---~~-~~~~i~l~~g~r~~~-dl~~~e~l~~~~~~~~~~~~~~~~s 270 (339)
T PRK07609 196 TFFLREDSDKPIVLLASGTGFAPIKSIVEHLRA---KG-IQRPVTLYWGARRPE-DLYLSALAEQWAEELPNFRYVPVVS 270 (339)
T ss_pred eEEecCCCCCCEEEEecCcChhHHHHHHHHHHh---cC-CCCcEEEEEecCChH-HhccHHHHHHHHHhCCCeEEEEEec
Confidence 999886667899999999999999999999875 22 346899999999998 8888999999998888889999999
Q ss_pred cCCC------CcccchhHHhcc
Q 006697 615 REGS------QKEYVQHKMMDK 630 (635)
Q Consensus 615 R~~~------~k~yVQd~l~~~ 630 (635)
|+.+ .++||++.+.++
T Consensus 271 ~~~~~~~~~g~~G~v~~~~~~~ 292 (339)
T PRK07609 271 DALDDDAWTGRTGFVHQAVLED 292 (339)
T ss_pred CCCCCCCccCccCcHHHHHHhh
Confidence 8422 468999887653
No 36
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.85 E-value=5.2e-21 Score=194.41 Aligned_cols=155 Identities=25% Similarity=0.367 Sum_probs=130.7
Q ss_pred CCChhhHHHHhcCCC-CccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHh-hcCCCCCCCCccEEEEEee
Q 006697 455 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIR 532 (635)
Q Consensus 455 ~~p~~~ll~~~~p~l-~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~i~~~ 532 (635)
...+||++.+.+|.. ..|+|||+|.|.. .+.++|+|+.++ .|.+|+||. .+++| +.|.|.+|
T Consensus 35 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~i~~~~---------~G~~s~~l~~~l~~G------~~v~i~gP 98 (238)
T cd06211 35 EFQAGQYVNLQAPGYEGTRAFSIASSPSD-AGEIELHIRLVP---------GGIATTYVHKQLKEG------DELEISGP 98 (238)
T ss_pred ccCCCCeEEEEcCCCCCccccccCCCCCC-CCEEEEEEEECC---------CCcchhhHhhcCCCC------CEEEEECC
Confidence 357899988875654 5899999999864 578999998853 599999997 59999 89999999
Q ss_pred CCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEE
Q 006697 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (635)
Q Consensus 533 ~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a 612 (635)
.|+|.++.+..+|+||||+|||||||++++++... ++ ...+++||||+|+.+ |.+|.+||+++++...+++++.+
T Consensus 99 ~G~~~~~~~~~~~~v~iagG~GiaP~~~~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 173 (238)
T cd06211 99 YGDFFVRDSDQRPIIFIAGGSGLSSPRSMILDLLE---RG-DTRKITLFFGARTRA-ELYYLDEFEALEKDHPNFKYVPA 173 (238)
T ss_pred ccceEecCCCCCCEEEEeCCcCHHHHHHHHHHHHh---cC-CCCcEEEEEecCChh-hhccHHHHHHHHHhCCCeEEEEE
Confidence 99998876556899999999999999999999875 22 336899999999998 99999999999988888889999
Q ss_pred EecCCC------CcccchhHHhcc
Q 006697 613 FSREGS------QKEYVQHKMMDK 630 (635)
Q Consensus 613 ~SR~~~------~k~yVQd~l~~~ 630 (635)
+||+.. .++||++.+.+.
T Consensus 174 ~s~~~~~~~~~~~~g~v~~~l~~~ 197 (238)
T cd06211 174 LSREPPESNWKGFTGFVHDAAKKH 197 (238)
T ss_pred ECCCCCCcCcccccCcHHHHHHHh
Confidence 998643 358999987654
No 37
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=99.85 E-value=2e-20 Score=180.20 Aligned_cols=140 Identities=26% Similarity=0.437 Sum_probs=117.0
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHHHH
Q 006697 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKW 164 (635)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~~~ 164 (635)
+|.|+|+|+||||+++|+.|++.+.. ..++++++++.+..+ +.+++.+||++||||.|++|+++..|++.
T Consensus 1 ~i~IiY~S~tGnTe~vA~~Ia~~l~~----~~~~i~~~~~~~~~~------l~~~d~ii~gspty~~g~~p~~~~~fl~~ 70 (167)
T TIGR01752 1 KIGIFYGTDTGNTEGIAEKIQKELGE----DDVDVFNIAKASKED------LNAYDKLILGTPTWGVGELQEDWEDFLPT 70 (167)
T ss_pred CEEEEEECCCChHHHHHHHHHHHhCC----CceEEEEcccCCHhH------HhhCCEEEEEecCCCCCcCcHHHHHHHHH
Confidence 48999999999999999999999863 347888998877655 88999999999999999999999999998
Q ss_pred HhcCCCCCCCCCCceEEEEEecCc-ch-hHHHHHHHHHHHHHHHCCCEEeecc------------e---------eecCC
Q 006697 165 FTEGNDRGPWLQQLKFGVFGLGNR-QY-EHFNKIGIVLDEELCKQGGARLVPL------------G---------LGDDD 221 (635)
Q Consensus 165 L~~~~~~~~~l~~~~~aVFGlGds-~Y-~~f~~~~k~ld~~L~~lGa~~v~~~------------g---------~gD~~ 221 (635)
|.... ++++++++||+||+ .| +|||.+.+.+++.|++.|++.+... . .-|..
T Consensus 71 l~~~~-----l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~~~~gy~~~~~~~~~~~~~f~gl~~~~~ 145 (167)
T TIGR01752 71 LEELD-----FTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHFEASKAVRDGDKFVGLALDED 145 (167)
T ss_pred hhcCC-----CCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEceecCCCcccccchheeCCCEEEEEEecCC
Confidence 86643 88999999999998 47 7999999999999999999988765 1 11222
Q ss_pred C---CchHHHHHHHHHHHHHH
Q 006697 222 Q---CIEDDFTAWRELVWPEL 239 (635)
Q Consensus 222 ~---~~e~~f~~W~~~l~~~L 239 (635)
+ -.++.+.+|.++|-+++
T Consensus 146 ~~~~~~~~r~~~w~~~~~~~~ 166 (167)
T TIGR01752 146 NQPDLTEERIEKWVEQIKPEF 166 (167)
T ss_pred CchhhhHHHHHHHHHHHHHhh
Confidence 1 24788889988876553
No 38
>PRK08051 fre FMN reductase; Validated
Probab=99.85 E-value=5.6e-21 Score=193.64 Aligned_cols=155 Identities=17% Similarity=0.233 Sum_probs=128.4
Q ss_pred CCChhhHHHHhcCCCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHH-hhcCCCCCCCCccEEEEEeeC
Q 006697 455 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWM-KNAIPLEGNGDCSWAPIFIRP 533 (635)
Q Consensus 455 ~~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L-~~l~~g~~~~~~~~v~i~~~~ 533 (635)
...+|||+.+.++....|+|||+|.|.. ++.++|+|+.+. .|..|.++ .++++| +.|.|.+|.
T Consensus 29 ~~~pGQ~v~l~~~~~~~r~ySias~p~~-~~~l~~~v~~~~---------~~~~~~~~~~~l~~G------~~v~v~gP~ 92 (232)
T PRK08051 29 SFRAGQYLMVVMGEKDKRPFSIASTPRE-KGFIELHIGASE---------LNLYAMAVMERILKD------GEIEVDIPH 92 (232)
T ss_pred ccCCCCEEEEEcCCCcceeecccCCCCC-CCcEEEEEEEcC---------CCcchHHHHHHcCCC------CEEEEEcCC
Confidence 3578999888767777899999999854 577999998753 34445454 569999 899999999
Q ss_pred CCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEE
Q 006697 534 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (635)
Q Consensus 534 g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~ 613 (635)
|+|.++.+..+|+||||+||||||+++++++.... + ...+++|+||||+.+ |.+|.+||+++++.+.+++++.++
T Consensus 93 G~~~~~~~~~~~~vliagG~GiaP~~~~l~~~~~~---~-~~~~v~l~~g~r~~~-~~~~~~el~~l~~~~~~~~~~~~~ 167 (232)
T PRK08051 93 GDAWLREESERPLLLIAGGTGFSYARSILLTALAQ---G-PNRPITLYWGGREED-HLYDLDELEALALKHPNLHFVPVV 167 (232)
T ss_pred CceEccCCCCCcEEEEecCcCcchHHHHHHHHHHh---C-CCCcEEEEEEeccHH-HhhhhHHHHHHHHHCCCcEEEEEe
Confidence 99888765668999999999999999999998752 2 446899999999999 999999999999988888999999
Q ss_pred ecCCC----CcccchhHHhcc
Q 006697 614 SREGS----QKEYVQHKMMDK 630 (635)
Q Consensus 614 SR~~~----~k~yVQd~l~~~ 630 (635)
||+++ .++||++.+.++
T Consensus 168 ~~~~~~~~~~~g~v~~~l~~~ 188 (232)
T PRK08051 168 EQPEEGWQGKTGTVLTAVMQD 188 (232)
T ss_pred CCCCCCcccceeeehHHHHhh
Confidence 98654 478999887653
No 39
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.85 E-value=5e-21 Score=191.48 Aligned_cols=145 Identities=30% Similarity=0.470 Sum_probs=125.6
Q ss_pred CCChhhHHHHhcCC---CCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEe
Q 006697 455 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 531 (635)
Q Consensus 455 ~~p~~~ll~~~~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~ 531 (635)
...+||++.+.+|. ..+|+|||+|+|.. .+.++|+|+.+. .|.+|+||.++++| +.+.|.+
T Consensus 22 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~l~vk~~~---------~G~~s~~l~~~~~G------~~v~i~g 85 (223)
T cd00322 22 SFKPGQYVDLHLPGDGRGLRRAYSIASSPDE-EGELELTVKIVP---------GGPFSAWLHDLKPG------DEVEVSG 85 (223)
T ss_pred CcCCCcEEEEEecCCCCcceeeeeccCCCCC-CCeEEEEEEEeC---------CCchhhHHhcCCCC------CEEEEEC
Confidence 34789999987564 57899999999864 478999999854 59999999999999 8999999
Q ss_pred eCCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEE
Q 006697 532 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 611 (635)
Q Consensus 532 ~~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~ 611 (635)
|.|+|.++....+|+||||+|||||||+++++++... + ..++++||||+|+.+ |++|++||+++++.+.++++++
T Consensus 86 P~G~~~~~~~~~~~~v~ia~G~Giap~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 160 (223)
T cd00322 86 PGGDFFLPLEESGPVVLIAGGIGITPFRSMLRHLAAD---K-PGGEITLLYGARTPA-DLLFLDELEELAKEGPNFRLVL 160 (223)
T ss_pred CCcccccCcccCCcEEEEecCCchhHHHHHHHHHHhh---C-CCCcEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEE
Confidence 9999876656678999999999999999999998752 1 457899999999999 9999999999999888889999
Q ss_pred EEecCCCCc
Q 006697 612 AFSREGSQK 620 (635)
Q Consensus 612 a~SR~~~~k 620 (635)
+++|++...
T Consensus 161 ~~~~~~~~~ 169 (223)
T cd00322 161 ALSRESEAK 169 (223)
T ss_pred EecCCCCCC
Confidence 999976643
No 40
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=99.84 E-value=8.3e-21 Score=197.74 Aligned_cols=144 Identities=33% Similarity=0.529 Sum_probs=124.8
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~ 162 (635)
..+-.|||+||||||+++|+.+++.+.+. ...++++|++ |+..+ ++ +.+++|++.|+-+|+|| +..|+
T Consensus 46 ~~~~~vfy~s~~GtA~~~A~~~~e~~~sl--d~~~~llnl~-y~~~d------~p-en~~~~lv~~~~~~~~~--~d~~~ 113 (601)
T KOG1160|consen 46 LIKSKVFYSSLTGTAKKAAKSVHEKLKSL--DELPKLLNLD-YSDFD------VP-ENALYFLVLPSYDIDPP--LDYFL 113 (601)
T ss_pred CccceEEEEeccchHHHHHHHHHHHHHhc--ccchhhcCCC-CCccC------CC-cceEEEEEecccCCCCc--HHHHH
Confidence 34458999999999999999999999987 6668899998 77776 67 67777777777799988 88999
Q ss_pred HHHhcCCCC----CCCCCCceEEEEEecCcch-hHHHHHHHHHHHHHHHCCCEEeecceeecCCCCchHHHHHHHHHHHH
Q 006697 163 KWFTEGNDR----GPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWP 237 (635)
Q Consensus 163 ~~L~~~~~~----~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~~~e~~f~~W~~~l~~ 237 (635)
.||++...+ +.+|++++||||||||+.| ++||..+|++|+|+..|||+|+.|+|++|-++ ..+++|...+.+
T Consensus 114 ~~L~Esa~DFRv~~~~L~~~~yaVfGlG~~~~~~~f~~~ak~~d~wi~~LG~~r~~p~G~~~~~~---~~id~W~~~~~~ 190 (601)
T KOG1160|consen 114 QWLEESANDFRVGSFPLRGLVYAVFGLGDSEYWPKFCYQAKRADKWISRLGGRRIFPLGEVDMDS---AKIDEWTSLVAE 190 (601)
T ss_pred HHHHhhhhccccCCccccCceEEEEeccchhhhhHHHHHHHhHHHHHHhhcCceeeecCcccccc---ccHHHHHHHHHH
Confidence 999875433 5789999999999999998 99999999999999999999999999998764 445599999999
Q ss_pred HHHH
Q 006697 238 ELDQ 241 (635)
Q Consensus 238 ~L~~ 241 (635)
.|++
T Consensus 191 ~Lk~ 194 (601)
T KOG1160|consen 191 TLKD 194 (601)
T ss_pred HHcC
Confidence 8875
No 41
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.84 E-value=8.4e-21 Score=191.89 Aligned_cols=157 Identities=20% Similarity=0.174 Sum_probs=131.3
Q ss_pred CCChhhHHHHhcCCC-CccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhh-cCCCCCCCCccEEEEEee
Q 006697 455 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 532 (635)
Q Consensus 455 ~~p~~~ll~~~~p~l-~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~ 532 (635)
...+|||+.+.+|.. .+|+|||+|.|.. .+.++|+|+.+. .|.+|.||++ +++| +.|.|.+|
T Consensus 23 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~~~~~vk~~~---------~G~~s~~l~~~~~~g------~~v~v~gP 86 (232)
T cd06190 23 DFLPGQYALLALPGVEGARAYSMANLANA-SGEWEFIIKRKP---------GGAASNALFDNLEPG------DELELDGP 86 (232)
T ss_pred ccCCCCEEEEECCCCCcccCccCCcCCCC-CCEEEEEEEEcC---------CCcchHHHhhcCCCC------CEEEEECC
Confidence 357899998876766 7899999998864 578999998753 5899999987 6898 89999999
Q ss_pred CCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEE
Q 006697 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (635)
Q Consensus 533 ~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a 612 (635)
.|.|.++.+..+++||||+|||||||++++++..... .....+++|+||+|+.+ |++|++||+++++.+.+++++.+
T Consensus 87 ~G~~~~~~~~~~~illIagG~GiaP~~~~l~~~~~~~--~~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 163 (232)
T cd06190 87 YGLAYLRPDEDRDIVCIAGGSGLAPMLSILRGAARSP--YLSDRPVDLFYGGRTPS-DLCALDELSALVALGARLRVTPA 163 (232)
T ss_pred cccceecCCCCCcEEEEeeCcCHHHHHHHHHHHHhcc--cCCCCeEEEEEeecCHH-HHhhHHHHHHHHHhCCCEEEEEE
Confidence 9988776555679999999999999999999987521 11357899999999988 99999999999998888889999
Q ss_pred EecCCC--------CcccchhHHhcc
Q 006697 613 FSREGS--------QKEYVQHKMMDK 630 (635)
Q Consensus 613 ~SR~~~--------~k~yVQd~l~~~ 630 (635)
+|+++. .++||++.+.+.
T Consensus 164 ~s~~~~~~~~~~~~~~g~v~~~l~~~ 189 (232)
T cd06190 164 VSDAGSGSAAGWDGPTGFVHEVVEAT 189 (232)
T ss_pred eCCCCCCcCCCccCCcCcHHHHHHhh
Confidence 997653 357899887654
No 42
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.84 E-value=7.8e-21 Score=192.62 Aligned_cols=155 Identities=25% Similarity=0.316 Sum_probs=130.6
Q ss_pred CCChhhHHHHhcCC-CCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhh-cCCCCCCCCccEEEEEee
Q 006697 455 TPPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 532 (635)
Q Consensus 455 ~~p~~~ll~~~~p~-l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~ 532 (635)
...+|||+.+.+|. ...|+|||+|+|.. .+.++|+|+... .|.+|+||.+ +++| +.|.|.+|
T Consensus 34 ~~~pGQ~v~l~~~~~~~~R~ySi~s~~~~-~~~l~~~i~~~~---------~G~~s~~l~~~~~~G------d~v~i~gP 97 (236)
T cd06210 34 EFVPGQFVEIEIPGTDTRRSYSLANTPNW-DGRLEFLIRLLP---------GGAFSTYLETRAKVG------QRLNLRGP 97 (236)
T ss_pred CcCCCCEEEEEcCCCccceecccCCCCCC-CCEEEEEEEEcC---------CCccchhhhhCcCCC------CEEEEecC
Confidence 35789999887564 35799999999864 468999998753 5899999998 9999 89999999
Q ss_pred CCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEE
Q 006697 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (635)
Q Consensus 533 ~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a 612 (635)
.|.|.++.+..+++||||+|||||||+++++++.. .+ ...+++||||+|+.+ |.+|.+||+++++...+++++++
T Consensus 98 ~G~f~l~~~~~~~~vliagGtGiaP~~~~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 172 (236)
T cd06210 98 LGAFGLRENGLRPRWFVAGGTGLAPLLSMLRRMAE---WG-EPQEARLFFGVNTEA-ELFYLDELKRLADSLPNLTVRIC 172 (236)
T ss_pred cceeeecCCCCccEEEEccCcchhHHHHHHHHHHh---cC-CCceEEEEEecCCHH-HhhhHHHHHHHHHhCCCeEEEEE
Confidence 99999876556799999999999999999999875 22 346899999999988 99999999999998888899999
Q ss_pred EecCCC----CcccchhHHhcc
Q 006697 613 FSREGS----QKEYVQHKMMDK 630 (635)
Q Consensus 613 ~SR~~~----~k~yVQd~l~~~ 630 (635)
+||+.. .++++++.+.+.
T Consensus 173 ~s~~~~~~~~~~g~~~~~l~~~ 194 (236)
T cd06210 173 VWRPGGEWEGYRGTVVDALRED 194 (236)
T ss_pred EcCCCCCcCCccCcHHHHHHHh
Confidence 998643 467888877653
No 43
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.84 E-value=9.8e-21 Score=207.38 Aligned_cols=149 Identities=15% Similarity=0.302 Sum_probs=124.1
Q ss_pred CCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEeeCCCCcCCCCCCCcEEE
Q 006697 469 LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIM 548 (635)
Q Consensus 469 l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~g~F~lp~~~~~piIm 548 (635)
...|+|||+|.|.. .+.++|+|+++.++...++...|.+|+||+++++| +.|.|.+|.|+|.++ +..+|+||
T Consensus 208 ~~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~v~gP~G~f~~~-~~~~~ivl 279 (409)
T PRK05464 208 PVIRAYSMANYPEE-KGIIMLNVRIATPPPGNPDVPPGIMSSYIFSLKPG------DKVTISGPFGEFFAK-DTDAEMVF 279 (409)
T ss_pred ceeeeeccCCCCCC-CCeEEEEEEEeecCCCcCCCCCCchhhHHHhCCCC------CEEEEEccccCcEec-CCCceEEE
Confidence 35799999999865 56899999987555433445579999999999999 899999999999876 45689999
Q ss_pred EecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEEecCCC------Cccc
Q 006697 549 VGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS------QKEY 622 (635)
Q Consensus 549 Ig~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~SR~~~------~k~y 622 (635)
||+|||||||+||+++.+... ....+++||||+|+++ |.+|.+||+++++...++++++++||+.. .++|
T Consensus 280 IAgGtGIaP~~sml~~~l~~~---~~~~~v~L~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~ 355 (409)
T PRK05464 280 IGGGAGMAPMRSHIFDQLKRL---KSKRKISFWYGARSLR-EMFYVEDFDQLAAENPNFKWHVALSDPLPEDNWTGYTGF 355 (409)
T ss_pred EEeccChhHHHHHHHHHHhCC---CCCceEEEEEecCCHH-HhhHHHHHHHHHHhCCCeEEEEEEcCCCCCCCCCCccce
Confidence 999999999999999877521 1346899999999998 99999999999988888899999997532 4578
Q ss_pred chhHHhc
Q 006697 623 VQHKMMD 629 (635)
Q Consensus 623 VQd~l~~ 629 (635)
|++.+.+
T Consensus 356 v~~~l~~ 362 (409)
T PRK05464 356 IHNVLYE 362 (409)
T ss_pred eCHHHHH
Confidence 9887754
No 44
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.84 E-value=1.3e-20 Score=190.16 Aligned_cols=153 Identities=25% Similarity=0.357 Sum_probs=129.5
Q ss_pred CCChhhHHHHhcCCC-CccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhh-cCCCCCCCCccEEEEEee
Q 006697 455 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 532 (635)
Q Consensus 455 ~~p~~~ll~~~~p~l-~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~ 532 (635)
...+||++.+.+|.. ..|+|||+|.|.. +.++|+|+.+. .|.+|+||++ +++| +.|.|.+|
T Consensus 30 ~~~pGQ~v~l~~~~~~~~r~ysi~s~~~~--~~i~~~i~~~~---------~G~~s~~l~~~l~~G------~~v~v~gP 92 (228)
T cd06209 30 AFLPGQYVNLQVPGTDETRSYSFSSAPGD--PRLEFLIRLLP---------GGAMSSYLRDRAQPG------DRLTLTGP 92 (228)
T ss_pred ccCCCCEEEEEeCCCCcccccccccCCCC--CeEEEEEEEcC---------CCcchhhHHhccCCC------CEEEEECC
Confidence 346899988875654 4799999998864 78999998854 6999999999 9999 89999999
Q ss_pred CCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEE
Q 006697 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (635)
Q Consensus 533 ~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a 612 (635)
.|.|.++.. .+|+||||+||||||+++++++... .+ ..++++|+||+|+.+ |++|.+||+++.+...+++++++
T Consensus 93 ~G~~~~~~~-~~~~vlia~GtGIaP~~~ll~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 166 (228)
T cd06209 93 LGSFYLREV-KRPLLMLAGGTGLAPFLSMLDVLAE---DG-SAHPVHLVYGVTRDA-DLVELDRLEALAERLPGFSFRTV 166 (228)
T ss_pred cccceecCC-CCeEEEEEcccCHhHHHHHHHHHHh---cC-CCCcEEEEEecCCHH-HhccHHHHHHHHHhCCCeEEEEE
Confidence 999887643 4799999999999999999999875 22 457899999999988 99999999999988888899999
Q ss_pred EecCCC---CcccchhHHhcc
Q 006697 613 FSREGS---QKEYVQHKMMDK 630 (635)
Q Consensus 613 ~SR~~~---~k~yVQd~l~~~ 630 (635)
+||+.. .++||++.+.+.
T Consensus 167 ~s~~~~~~~~~g~v~~~~~~~ 187 (228)
T cd06209 167 VADPDSWHPRKGYVTDHLEAE 187 (228)
T ss_pred EcCCCccCCCcCCccHHHHHh
Confidence 998654 457999887653
No 45
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.84 E-value=1.3e-20 Score=201.68 Aligned_cols=152 Identities=21% Similarity=0.308 Sum_probs=129.4
Q ss_pred CChhhHHHHhcCCCC-ccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhh-cCCCCCCCCccEEEEEeeC
Q 006697 456 PPIGVFFAAVAPHLQ-PRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRP 533 (635)
Q Consensus 456 ~p~~~ll~~~~p~l~-pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~ 533 (635)
..+|||+.+.+|... .|+|||+|+|.. .+.++|+|+.+. .|.+|+||.+ +++| +.|.|.+|.
T Consensus 137 ~~pGQ~v~l~~~~~~~~R~ySias~p~~-~~~l~~~ik~~~---------~G~~s~~L~~~l~~G------~~v~i~gP~ 200 (340)
T PRK11872 137 FLPGQYARLQIPGTDDWRSYSFANRPNA-TNQLQFLIRLLP---------DGVMSNYLRERCQVG------DEILFEAPL 200 (340)
T ss_pred cCCCCEEEEEeCCCCceeecccCCCCCC-CCeEEEEEEECC---------CCcchhhHhhCCCCC------CEEEEEcCc
Confidence 478999988766544 799999999864 578999999864 6899999975 9999 899999999
Q ss_pred CCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEE
Q 006697 534 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (635)
Q Consensus 534 g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~ 613 (635)
|.|.++. ..+|+||||+|||||||++|+++... .+ ..++++||||+|+++ |++|.+||++|++...+++++.+.
T Consensus 201 G~f~l~~-~~~~~vliagGtGiaP~~s~l~~~~~---~~-~~~~v~l~~g~r~~~-dl~~~~el~~~~~~~~~~~~~~~~ 274 (340)
T PRK11872 201 GAFYLRE-VERPLVFVAGGTGLSAFLGMLDELAE---QG-CSPPVHLYYGVRHAA-DLCELQRLAAYAERLPNFRYHPVV 274 (340)
T ss_pred ceeEeCC-CCCcEEEEeCCcCccHHHHHHHHHHH---cC-CCCcEEEEEecCChH-HhccHHHHHHHHHHCCCcEEEEEE
Confidence 9998864 45899999999999999999999875 22 346899999999998 999999999999988889999999
Q ss_pred ecCCC----CcccchhHHhc
Q 006697 614 SREGS----QKEYVQHKMMD 629 (635)
Q Consensus 614 SR~~~----~k~yVQd~l~~ 629 (635)
|+++. .++||++.+.+
T Consensus 275 s~~~~~~~g~~g~v~~~l~~ 294 (340)
T PRK11872 275 SKASADWQGKRGYIHEHFDK 294 (340)
T ss_pred eCCCCcCCCceeeccHHHHH
Confidence 87543 46899987764
No 46
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.84 E-value=1.2e-20 Score=206.08 Aligned_cols=140 Identities=15% Similarity=0.233 Sum_probs=119.9
Q ss_pred CChhhHHHHhcC--C--C-CccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhh-cCCCCCCCCccEEEE
Q 006697 456 PPIGVFFAAVAP--H--L-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPI 529 (635)
Q Consensus 456 ~p~~~ll~~~~p--~--l-~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i 529 (635)
..+|||+.+.++ . . .+|+|||+|+|. .+.++|+|+.+. .|.+|+||++ +++| +.|.|
T Consensus 185 ~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~--~~~l~~~Vk~~~---------~G~~S~~L~~~l~~G------d~v~v 247 (399)
T PRK13289 185 FKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN--GKYYRISVKREA---------GGKVSNYLHDHVNVG------DVLEL 247 (399)
T ss_pred CCCCCeEEEEEecCCccccceeEEEeeeCCC--CCeEEEEEEECC---------CCeehHHHhhcCCCC------CEEEE
Confidence 468888888643 1 2 359999999985 468999998743 5999999987 9999 89999
Q ss_pred EeeCCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEE
Q 006697 530 FIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISEL 609 (635)
Q Consensus 530 ~~~~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l 609 (635)
.+|.|.|.++.+..+|+||||+|||||||+||+++.... + ...+++||||||+.+ |++|++||+++++.+.++++
T Consensus 248 ~gP~G~f~l~~~~~~~~vlIagGtGIaP~~s~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~eL~~l~~~~~~~~~ 322 (399)
T PRK13289 248 AAPAGDFFLDVASDTPVVLISGGVGITPMLSMLETLAAQ---Q-PKRPVHFIHAARNGG-VHAFRDEVEALAARHPNLKA 322 (399)
T ss_pred EcCccccccCCCCCCcEEEEecCccHHHHHHHHHHHHhc---C-CCCCEEEEEEeCChh-hchHHHHHHHHHHhCCCcEE
Confidence 999999999876678999999999999999999998752 2 457999999999998 99999999999998878899
Q ss_pred EEEEecCC
Q 006697 610 ILAFSREG 617 (635)
Q Consensus 610 ~~a~SR~~ 617 (635)
++++||+.
T Consensus 323 ~~~~s~~~ 330 (399)
T PRK13289 323 HTWYREPT 330 (399)
T ss_pred EEEECCCc
Confidence 99999854
No 47
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.84 E-value=1.4e-20 Score=205.99 Aligned_cols=147 Identities=17% Similarity=0.322 Sum_probs=120.9
Q ss_pred CccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEeeCCCCcCCCCCCCcEEEE
Q 006697 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMV 549 (635)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~g~F~lp~~~~~piImI 549 (635)
..|+|||+|+|.. .+.++|+|+++.++....+...|.+|+||+++++| +.|.|.+|.|.|.+.. ..+|+|||
T Consensus 205 ~~R~ySias~p~~-~~~l~~~vr~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~i~gP~G~f~l~~-~~~~lvlI 276 (405)
T TIGR01941 205 TVRAYSMANYPAE-KGIIKLNVRIATPPFINSDIPPGIMSSYIFSLKPG------DKVTISGPFGEFFAKD-TDAEMVFI 276 (405)
T ss_pred cceeecCCCCCCC-CCeEEEEEEEeccCcccCCCCCCcHHHHHhcCCCc------CEEEEEeccCCCeecC-CCCCEEEE
Confidence 4699999999865 57899999986432211223469999999999999 8999999999998863 56899999
Q ss_pred ecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEEecCCC------Ccccc
Q 006697 550 GPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS------QKEYV 623 (635)
Q Consensus 550 g~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~SR~~~------~k~yV 623 (635)
|+|||||||++|+++.+... ....+++||||+|+++ |.+|.+||+++++...++++++++||++. .++||
T Consensus 277 AgGtGIaP~lsmi~~~l~~~---~~~~~v~l~~g~R~~~-dl~~~~el~~l~~~~~~~~~~~~~s~~~~~~~~~g~~G~v 352 (405)
T TIGR01941 277 GGGAGMAPMRSHIFDQLKRL---KSKRKISFWYGARSLR-EMFYQEDFDQLEAENPNFVWHVALSDPQPEDNWTGYTGFI 352 (405)
T ss_pred ecCcCcchHHHHHHHHHhcC---CCCCeEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEEEeCCCCccCCCCCcccee
Confidence 99999999999999876521 1346899999999998 99999999999988888899999997542 45789
Q ss_pred hhHHh
Q 006697 624 QHKMM 628 (635)
Q Consensus 624 Qd~l~ 628 (635)
++.+.
T Consensus 353 ~~~l~ 357 (405)
T TIGR01941 353 HNVLY 357 (405)
T ss_pred CHHHH
Confidence 88764
No 48
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.84 E-value=2e-20 Score=187.86 Aligned_cols=154 Identities=21% Similarity=0.286 Sum_probs=130.6
Q ss_pred CChhhHHHHhcCCC--CccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhh-cCCCCCCCCccEEEEEee
Q 006697 456 PPIGVFFAAVAPHL--QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 532 (635)
Q Consensus 456 ~p~~~ll~~~~p~l--~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~ 532 (635)
..+||++.+.+|.. ..|+|||+|.|.. .+.++|+|+... .|.+|+||.+ +++| +.|.|.+|
T Consensus 24 ~~pGq~i~l~~~~~~~~~r~ysi~s~~~~-~~~~~~~i~~~~---------~G~~s~~l~~~l~~G------~~v~i~gP 87 (224)
T cd06187 24 FWAGQYVNVTVPGRPRTWRAYSPANPPNE-DGEIEFHVRAVP---------GGRVSNALHDELKVG------DRVRLSGP 87 (224)
T ss_pred cCCCceEEEEcCCCCCcceeccccCCCCC-CCEEEEEEEeCC---------CCcchHHHhhcCccC------CEEEEeCC
Confidence 46799988886654 3799999999865 478999998743 5999999998 9999 89999999
Q ss_pred CCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEE
Q 006697 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (635)
Q Consensus 533 ~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a 612 (635)
.|.|.++.+..+++||||+|||||||++++++... ++ ...+++|+|++|+.+ |++|.+||+++.+...+++++++
T Consensus 88 ~G~~~~~~~~~~~~lliagG~GI~p~~sll~~~~~---~~-~~~~v~l~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 162 (224)
T cd06187 88 YGTFYLRRDHDRPVLCIAGGTGLAPLRAIVEDALR---RG-EPRPVHLFFGARTER-DLYDLEGLLALAARHPWLRVVPV 162 (224)
T ss_pred ccceEecCCCCCCEEEEecCcCHHHHHHHHHHHHh---cC-CCCCEEEEEecCChh-hhcChHHHHHHHHhCCCeEEEEE
Confidence 99998876556899999999999999999999875 22 457899999999999 99999999999988888888888
Q ss_pred EecCCC----CcccchhHHhcc
Q 006697 613 FSREGS----QKEYVQHKMMDK 630 (635)
Q Consensus 613 ~SR~~~----~k~yVQd~l~~~ 630 (635)
+++++. .++||++.+.+.
T Consensus 163 ~~~~~~~~~~~~g~~~~~~~~~ 184 (224)
T cd06187 163 VSHEEGAWTGRRGLVTDVVGRD 184 (224)
T ss_pred eCCCCCccCCCcccHHHHHHHh
Confidence 888643 568999988754
No 49
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=99.84 E-value=3.7e-20 Score=173.11 Aligned_cols=133 Identities=16% Similarity=0.179 Sum_probs=106.1
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEE-EEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 006697 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVK-VVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (635)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~-v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~ 162 (635)
|+++|+|+|+|||||++|+.|++.+... |+.++ +.++.+++.. ..++.+++.+||++||||.|.+|+++..|+
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~--g~~v~~~~~~~~~~~~----~~~~~~~d~iilgs~t~~~g~~p~~~~~fl 74 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKD--GHEVDILHRIGTLADA----PLDPENYDLVFLGTWTWERGRTPDEMKDFI 74 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhC--CeeEEecccccccccC----cCChhhCCEEEEEcCeeCCCcCCHHHHHHH
Confidence 5899999999999999999999999877 77777 5566643221 112667899999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCceEEEEEecCcch--hHHHHHHHHHHHHHHHCCCEEeecceeecCCC---CchHHHHHHHHHH
Q 006697 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ---CIEDDFTAWRELV 235 (635)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~---~~e~~f~~W~~~l 235 (635)
+++.. +++++++||+||+.| ++||.+++.++++|++++ |..+.+... ...+.+.+|.+++
T Consensus 75 ~~l~~--------~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~~~~-----~~~~i~~~~~~~~d~~~~~~~~~~~ 139 (140)
T TIGR01754 75 AELGY--------KPSNVAIFGTGETQWGDDLYCGAVDRLAHFFGSSH-----PVLKIEQMPHGEQDGRAIYDWLEGV 139 (140)
T ss_pred HHhcc--------cCCEEEEEEcCCCCcCcchHhHHHHHHHHHHcCcC-----CceeEecCCcccccHHHHHHHHHHh
Confidence 99853 478999999999999 799999999999997762 333333322 2456778998875
No 50
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.83 E-value=2e-20 Score=195.74 Aligned_cols=141 Identities=21% Similarity=0.243 Sum_probs=119.8
Q ss_pred CChhhHHHHhcCCCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEeeCCC
Q 006697 456 PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSN 535 (635)
Q Consensus 456 ~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~g~ 535 (635)
..+|||+.+.+|....|+|||+|+|.. ++.++|+|+. .|.+|+||.++++| +.|.|.+|.|.
T Consensus 38 ~~pGQ~v~l~~~~~~~~pySias~p~~-~~~l~l~Ik~-----------~G~~S~~L~~l~~G------d~v~v~gP~G~ 99 (289)
T PRK08345 38 FKPGQFVQVTIPGVGEVPISICSSPTR-KGFFELCIRR-----------AGRVTTVIHRLKEG------DIVGVRGPYGN 99 (289)
T ss_pred cCCCCEEEEEcCCCCceeeEecCCCCC-CCEEEEEEEe-----------CChHHHHHHhCCCC------CEEEEeCCCCC
Confidence 478999988756555799999999854 5789999986 58999999999999 89999999996
Q ss_pred -CcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEEe
Q 006697 536 -FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFS 614 (635)
Q Consensus 536 -F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~S 614 (635)
|.++....+|+||||+|||||||++|+++++.. +....+++|+||+|+.+ |++|++||+++++...+++++.++|
T Consensus 100 ~f~~~~~~~~~~llIAgGtGIaP~~s~l~~~l~~---~~~~~~v~l~~~~r~~~-d~~~~deL~~l~~~~~~~~~~~~~s 175 (289)
T PRK08345 100 GFPVDEMEGMDLLLIAGGLGMAPLRSVLLYAMDN---RWKYGNITLIYGAKYYE-DLLFYDELIKDLAEAENVKIIQSVT 175 (289)
T ss_pred CCCcccccCceEEEEecccchhHHHHHHHHHHhc---CCCCCcEEEEEecCCHH-HhhHHHHHHHHHhcCCCEEEEEEec
Confidence 776644457999999999999999999998752 21347999999999998 9999999999988888889999999
Q ss_pred cCCC
Q 006697 615 REGS 618 (635)
Q Consensus 615 R~~~ 618 (635)
|++.
T Consensus 176 ~~~~ 179 (289)
T PRK08345 176 RDPE 179 (289)
T ss_pred CCCC
Confidence 8643
No 51
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.83 E-value=3.3e-20 Score=187.65 Aligned_cols=155 Identities=21% Similarity=0.353 Sum_probs=130.0
Q ss_pred CCChhhHHHHhcCCC-CccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhh-cCCCCCCCCccEEEEEee
Q 006697 455 TPPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIR 532 (635)
Q Consensus 455 ~~p~~~ll~~~~p~l-~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~ 532 (635)
...+||++.+.+|.. ..|+|||+|.|.. .+.++|+|+.+. .|.+|+||.+ +++| +.+.|.+|
T Consensus 29 ~~~pGQ~v~l~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~~~---------~G~~s~~l~~~l~~G------~~v~i~gP 92 (232)
T cd06212 29 KFFAGQYVDITVPGTEETRSFSMANTPAD-PGRLEFIIKKYP---------GGLFSSFLDDGLAVG------DPVTVTGP 92 (232)
T ss_pred CcCCCCeEEEEcCCCCcccccccCCCCCC-CCEEEEEEEECC---------CCchhhHHhhcCCCC------CEEEEEcC
Confidence 346899988875643 5899999999865 478999998853 5899999997 9999 89999999
Q ss_pred CCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEE
Q 006697 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (635)
Q Consensus 533 ~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a 612 (635)
.|.|.++....+++||||+|||||||++++++... ++ ..++++|+||+|+.+ |++|.+||+++++...+++++.+
T Consensus 93 ~G~~~~~~~~~~~~l~iagG~Giap~~~~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~ 167 (232)
T cd06212 93 YGTCTLRESRDRPIVLIGGGSGMAPLLSLLRDMAA---SG-SDRPVRFFYGARTAR-DLFYLEEIAALGEKIPDFTFIPA 167 (232)
T ss_pred cccceecCCCCCcEEEEecCcchhHHHHHHHHHHh---cC-CCCcEEEEEeccchH-HhccHHHHHHHHHhCCCEEEEEE
Confidence 99998876556899999999999999999999875 22 456899999999998 99999999999988778888889
Q ss_pred EecCCC------CcccchhHHhcc
Q 006697 613 FSREGS------QKEYVQHKMMDK 630 (635)
Q Consensus 613 ~SR~~~------~k~yVQd~l~~~ 630 (635)
+||+.. ..+||++.+.+.
T Consensus 168 ~s~~~~~~~~~~~~g~~~~~~~~~ 191 (232)
T cd06212 168 LSESPDDEGWSGETGLVTEVVQRN 191 (232)
T ss_pred ECCCCCCCCCcCCcccHHHHHHhh
Confidence 998643 357888877543
No 52
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.82 E-value=3.5e-20 Score=206.02 Aligned_cols=188 Identities=15% Similarity=0.107 Sum_probs=148.4
Q ss_pred HHHHHHHhhcccccccchhHHHHHHHHHHHHHhhheeeeeccCCCCcCCCCCCCCCCCCCCCccchHHHHhc-----CCC
Q 006697 10 VKFVESALGVSLGDSVTDTVILIATTSFAVVIGLLVLVWKKSSSDRSKEVKPVVPLKPLSAKDEDDEADIAA-----GKT 84 (635)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 84 (635)
.++|.++|++++.+ ++++.+||++ ||. +||++.. ++.+.|.+ .++
T Consensus 203 ~~~v~~~l~~~~~l--~l~~~~i~p~-HG~-------i~r~~~~--------------------~~l~~Y~~~~~~~~~~ 252 (479)
T PRK05452 203 SRLVTPKITEILGF--NLPVDMIATS-HGV-------VWRDNPT--------------------QIVELYLKWAADYQED 252 (479)
T ss_pred HHHHHHHHHHHhhc--CCCCCEEECC-CCc-------eEeCCHH--------------------HHHHHHHHHhhccCcC
Confidence 34688899999865 6788999999 999 8997653 33333332 477
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHHHH
Q 006697 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKW 164 (635)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~~~ 164 (635)
+|+|+|+|+|||||+||+.|++.+++.-.|++++++++++.+.++ ++.++.+++.+||+|||||+|.+| .+..|++.
T Consensus 253 kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~--i~~~~~~ad~vilGspT~~~~~~p-~~~~fl~~ 329 (479)
T PRK05452 253 RITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNE--ILTNVFRSKGVLVGSSTMNNVMMP-KIAGLLEE 329 (479)
T ss_pred cEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHH--HHhHHhhCCEEEEECCccCCcchH-HHHHHHHH
Confidence 899999999999999999999999865114678999999998876 556667899999999999877777 68999999
Q ss_pred HhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecceeecCCC--CchHHHHHHHHHHHHHHH
Q 006697 165 FTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPELD 240 (635)
Q Consensus 165 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~--~~e~~f~~W~~~l~~~L~ 240 (635)
|.... ++|+++++|| +|+|+|.+++.+.++|+++|++.+ +.......- ...+.+.++.+.+.+++.
T Consensus 330 l~~~~-----l~gK~~~vFG----Sygw~g~a~~~~~~~l~~~g~~~~-~~l~~~~~P~ee~~~~~~~~g~~la~~~~ 397 (479)
T PRK05452 330 ITGLR-----FRNKRASAFG----SHGWSGGAVDRLSTRLQDAGFEMS-LSLKAKWRPDQDALELCREHGREIARQWA 397 (479)
T ss_pred hhccC-----cCCCEEEEEE----CCCcCcHHHHHHHHHHHHCCCEEe-ccEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 98764 8999999999 799999999999999999999986 344443322 234455566666665554
No 53
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.82 E-value=3.5e-20 Score=188.60 Aligned_cols=151 Identities=21% Similarity=0.269 Sum_probs=127.3
Q ss_pred CChhhHHHHhcCCC----CccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEE-
Q 006697 456 PPIGVFFAAVAPHL----QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF- 530 (635)
Q Consensus 456 ~p~~~ll~~~~p~l----~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~- 530 (635)
..+||++.+.++.- ..|+|||+|.|.. +.++|+|+++. .|.+|+||+++++| +.|.+.
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~--~~i~~~i~~~~---------~G~~s~~l~~l~~G------d~v~v~~ 87 (241)
T cd06195 25 FQAGQFTKLGLPNDDGKLVRRAYSIASAPYE--ENLEFYIILVP---------DGPLTPRLFKLKPG------DTIYVGK 87 (241)
T ss_pred cCCCCeEEEeccCCCCCeeeecccccCCCCC--CeEEEEEEEec---------CCCCchHHhcCCCC------CEEEECc
Confidence 46799888765542 4699999999854 78999998754 69999999999999 899999
Q ss_pred eeCCCCcCCCC-CCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHc-CCccE
Q 006697 531 IRPSNFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE-GVISE 608 (635)
Q Consensus 531 ~~~g~F~lp~~-~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~-g~~~~ 608 (635)
+|.|.|.++.. ..+++||||+|||||||++++++.... + ..++++||||+|+.+ |++|.+||+++++. ..+++
T Consensus 88 gP~G~f~~~~~~~~~~~vlIagGtGiaP~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~~ 162 (241)
T cd06195 88 KPTGFLTLDEVPPGKRLWLLATGTGIAPFLSMLRDLEIW---E-RFDKIVLVHGVRYAE-ELAYQDEIEALAKQYNGKFR 162 (241)
T ss_pred CCCCceeecCCCCCceEEEEeeccchhhHHHHHHHHHhh---C-CCCcEEEEEccCCHH-HhhhHHHHHHHHhhcCCCEE
Confidence 99999998765 457999999999999999999998742 1 457899999999998 99999999999987 66778
Q ss_pred EEEEEecCCCC---cccchhHHh
Q 006697 609 LILAFSREGSQ---KEYVQHKMM 628 (635)
Q Consensus 609 l~~a~SR~~~~---k~yVQd~l~ 628 (635)
++.++||++.. ++||++.+.
T Consensus 163 ~~~~~s~~~~~~~~~g~v~~~l~ 185 (241)
T cd06195 163 YVPIVSREKENGALTGRIPDLIE 185 (241)
T ss_pred EEEEECcCCccCCCceEhHHhhh
Confidence 88899987663 689988765
No 54
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.82 E-value=3.9e-20 Score=197.34 Aligned_cols=141 Identities=16% Similarity=0.265 Sum_probs=118.4
Q ss_pred CChhhHHHHhcCC--CCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHh-hcCCCCCCCCccEEEEEee
Q 006697 456 PPIGVFFAAVAPH--LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFIR 532 (635)
Q Consensus 456 ~p~~~ll~~~~p~--l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~i~~~ 532 (635)
..+|||+.+.++. ...|+|||+|.|.. .+.++|+|+.+. .|.+|+||+ ++++| +.|.|.+|
T Consensus 37 f~pGQfv~l~~~~~~~~~R~ySias~p~~-~~~l~i~Vk~~~---------~G~~S~~L~~~l~~G------d~v~v~gP 100 (332)
T PRK10684 37 YRAGQYALVSIRNSAETLRAYTLSSTPGV-SEFITLTVRRID---------DGVGSQWLTRDVKRG------DYLWLSDA 100 (332)
T ss_pred cCCCCEEEEEecCCCEeeeeecccCCCCC-CCcEEEEEEEcC---------CCcchhHHHhcCCCC------CEEEEeCC
Confidence 4689988876453 23599999999864 467999999864 689999997 59999 89999999
Q ss_pred CCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEE
Q 006697 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (635)
Q Consensus 533 ~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a 612 (635)
.|.|.++....+|+||||+|||||||+||+++... ++ ...+++|+||+|+.+ |++|.+||+++++...++++++.
T Consensus 101 ~G~f~l~~~~~~~~vliAgG~GItP~~sml~~~~~---~~-~~~~v~l~y~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 175 (332)
T PRK10684 101 MGEFTCDDKAEDKYLLLAAGCGVTPIMSMRRWLLK---NR-PQADVQVIFNVRTPQ-DVIFADEWRQLKQRYPQLNLTLV 175 (332)
T ss_pred ccccccCCCCCCcEEEEecCcCcchHHHHHHHHHh---cC-CCCCEEEEEeCCChH-HhhhHHHHHHHHHHCCCeEEEEE
Confidence 99999876667899999999999999999998765 22 347899999999998 99999999999998777777777
Q ss_pred EecCC
Q 006697 613 FSREG 617 (635)
Q Consensus 613 ~SR~~ 617 (635)
.+++.
T Consensus 176 ~~~~~ 180 (332)
T PRK10684 176 AENNA 180 (332)
T ss_pred eccCC
Confidence 77543
No 55
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.81 E-value=1.1e-19 Score=183.28 Aligned_cols=153 Identities=23% Similarity=0.327 Sum_probs=125.8
Q ss_pred CChhhHHHHhcCCC-CccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhh-cCCCCCCCCccEEEEEeeC
Q 006697 456 PPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRP 533 (635)
Q Consensus 456 ~p~~~ll~~~~p~l-~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~ 533 (635)
..+|||+.+.++.. ..|+|||+|+|.. .+.++|+|+.+. .|.+|+||.+ +++| ++|.|.+|.
T Consensus 28 ~~pGQ~~~l~~~~~~~~r~ysi~s~~~~-~~~l~~~vk~~~---------~G~~s~~l~~~l~~G------~~v~i~gP~ 91 (227)
T cd06213 28 YKAGQYAELTLPGLPAARSYSFANAPQG-DGQLSFHIRKVP---------GGAFSGWLFGADRTG------ERLTVRGPF 91 (227)
T ss_pred cCCCCEEEEEeCCCCcccccccCCCCCC-CCEEEEEEEECC---------CCcchHHHHhcCCCC------CEEEEeCCC
Confidence 35889988875554 4899999999864 578999998753 5899999965 8999 899999999
Q ss_pred CCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHc-CCccEEEEE
Q 006697 534 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE-GVISELILA 612 (635)
Q Consensus 534 g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~-g~~~~l~~a 612 (635)
|.|.++. ..+++||||+|||||||++++++... ++ ...+++||||+|+++ |.+|.+||+++++. ..+++++.+
T Consensus 92 G~~~~~~-~~~~~lliagG~GiaP~~~~~~~~~~---~~-~~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~~~~ 165 (227)
T cd06213 92 GDFWLRP-GDAPILCIAGGSGLAPILAILEQARA---AG-TKRDVTLLFGARTQR-DLYALDEIAAIAARWRGRFRFIPV 165 (227)
T ss_pred cceEeCC-CCCcEEEEecccchhHHHHHHHHHHh---cC-CCCcEEEEEeeCCHH-HhccHHHHHHHHHhccCCeEEEEE
Confidence 9998864 34799999999999999999999875 22 456899999999998 99999999999975 466788888
Q ss_pred EecCCC------CcccchhHHhcc
Q 006697 613 FSREGS------QKEYVQHKMMDK 630 (635)
Q Consensus 613 ~SR~~~------~k~yVQd~l~~~ 630 (635)
+||+.. .++||++.+.+.
T Consensus 166 ~s~~~~~~~~~g~~g~v~~~l~~~ 189 (227)
T cd06213 166 LSEEPADSSWKGARGLVTEHIAEV 189 (227)
T ss_pred ecCCCCCCCccCCcccHHHHHHhh
Confidence 998642 346898877653
No 56
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.81 E-value=1.7e-19 Score=181.16 Aligned_cols=143 Identities=22% Similarity=0.230 Sum_probs=121.3
Q ss_pred CCChhhHHHHhcCCCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhh-cCCCCCCCCccEEEEEeeC
Q 006697 455 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRP 533 (635)
Q Consensus 455 ~~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~ 533 (635)
...+|||+.+.++....|+|||+|+|.. .+.++|+|+.+. .|.+|+||++ +++| +.|.|.+|.
T Consensus 23 ~~~pGQ~v~l~~~~~~~r~ySi~s~~~~-~~~~~~~i~~~~---------~G~~s~~l~~~~~~G------~~v~i~gP~ 86 (222)
T cd06194 23 PYLPGQYVNLRRAGGLARSYSPTSLPDG-DNELEFHIRRKP---------NGAFSGWLGEEARPG------HALRLQGPF 86 (222)
T ss_pred CcCCCCEEEEEcCCCCceeeecCCCCCC-CCEEEEEEEecc---------CCccchHHHhccCCC------CEEEEecCc
Confidence 3467999988767777899999999865 378999998753 5999999998 6999 899999999
Q ss_pred CCCcCCC-CCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEE
Q 006697 534 SNFKLPA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (635)
Q Consensus 534 g~F~lp~-~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a 612 (635)
|.|.+.. ...+++||||+|||||||++++++++.. + ..++++||||+|+.+ |++|++||+++++....++++.+
T Consensus 87 G~~~~~~~~~~~~~v~iagG~Giap~~~~l~~~~~~---~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~~ 161 (222)
T cd06194 87 GQAFYRPEYGEGPLLLVGAGTGLAPLWGIARAALRQ---G-HQGEIRLVHGARDPD-DLYLHPALLWLAREHPNFRYIPC 161 (222)
T ss_pred CCeeccCCCCCCCEEEEecCcchhhHHHHHHHHHhc---C-CCccEEEEEecCChh-hccCHHHHHHHHHHCCCeEEEEE
Confidence 9876653 4567999999999999999999998752 2 457899999999999 99999999999987777888888
Q ss_pred EecCCC
Q 006697 613 FSREGS 618 (635)
Q Consensus 613 ~SR~~~ 618 (635)
.++++.
T Consensus 162 ~~~~~~ 167 (222)
T cd06194 162 VSEGSQ 167 (222)
T ss_pred EccCCC
Confidence 988654
No 57
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.81 E-value=7.9e-20 Score=184.78 Aligned_cols=141 Identities=22% Similarity=0.352 Sum_probs=120.1
Q ss_pred CChhhHHHHhcC---CCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHh-hcCCCCCCCCccEEEEEe
Q 006697 456 PPIGVFFAAVAP---HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFI 531 (635)
Q Consensus 456 ~p~~~ll~~~~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~i~~ 531 (635)
..+||++.+.++ ...+|+|||+|.|. .+.++|+|+.+. .|.+|+||+ ++++| +.+.|.+
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~--~~~l~~~v~~~~---------~G~~s~~l~~~~~~G------d~v~i~g 90 (231)
T cd06191 28 FRPGQHVTLKLDFDGEELRRCYSLCSSPA--PDEISITVKRVP---------GGRVSNYLREHIQPG------MTVEVMG 90 (231)
T ss_pred CCCCCeEEEEEecCCeEEeeeeeccCCCC--CCeEEEEEEECC---------CCccchHHHhcCCCC------CEEEEeC
Confidence 468999877543 23479999999886 578999998853 589999998 59999 8999999
Q ss_pred eCCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEE
Q 006697 532 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 611 (635)
Q Consensus 532 ~~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~ 611 (635)
|.|.|.++.....++||||+||||||++|++++.... ....+++||||+|+++ |++|.+||+++++...+++++.
T Consensus 91 P~G~f~l~~~~~~~~lliagG~Gitp~~s~~~~~~~~----~~~~~v~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 165 (231)
T cd06191 91 PQGHFVYQPQPPGRYLLVAAGSGITPLMAMIRATLQT----APESDFTLIHSARTPA-DMIFAQELRELADKPQRLRLLC 165 (231)
T ss_pred CccceEeCCCCCCcEEEEecCccHhHHHHHHHHHHhc----CCCCCEEEEEecCCHH-HHhHHHHHHHHHHhCCCeEEEE
Confidence 9999998766668999999999999999999998652 1357899999999998 9999999999998888889999
Q ss_pred EEecCCC
Q 006697 612 AFSREGS 618 (635)
Q Consensus 612 a~SR~~~ 618 (635)
++||+..
T Consensus 166 ~~s~~~~ 172 (231)
T cd06191 166 IFTRETL 172 (231)
T ss_pred EECCCCC
Confidence 9998643
No 58
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.81 E-value=1.6e-19 Score=185.51 Aligned_cols=153 Identities=22% Similarity=0.302 Sum_probs=127.5
Q ss_pred CCChhhHHHHhcCCCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEeeCC
Q 006697 455 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS 534 (635)
Q Consensus 455 ~~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~g 534 (635)
+..+||++.+.+|....|+|||+|+|.. .+.++|+|+. .|..|+||+++++| +.+.|.+|.|
T Consensus 27 ~~~pGQ~i~l~~~~~~~~pySi~s~~~~-~~~l~~~Ik~-----------~G~~S~~L~~l~~G------~~v~i~gP~G 88 (253)
T cd06221 27 TFKPGQFVMLSLPGVGEAPISISSDPTR-RGPLELTIRR-----------VGRVTEALHELKPG------DTVGLRGPFG 88 (253)
T ss_pred CcCCCCEEEEEcCCCCccceEecCCCCC-CCeEEEEEEe-----------CChhhHHHHcCCCC------CEEEEECCcC
Confidence 4578999998866555799999999864 5789999986 58899999999999 8999999999
Q ss_pred C-CcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEE
Q 006697 535 N-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (635)
Q Consensus 535 ~-F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~ 613 (635)
. |.++....+|+||||+||||||+++++++.++. +....+++|||+.|+.+ |++|++||+++.+. .++++.+++
T Consensus 89 ~~f~~~~~~~~~iv~IA~G~GitP~ls~l~~~~~~---~~~~~~i~Li~~~r~~~-~~~~~~~L~~l~~~-~~~~~~~~~ 163 (253)
T cd06221 89 NGFPVEEMKGKDLLLVAGGLGLAPLRSLINYILDN---REDYGKVTLLYGARTPE-DLLFKEELKEWAKR-SDVEVILTV 163 (253)
T ss_pred CCcccccccCCeEEEEccccchhHHHHHHHHHHhc---cccCCcEEEEEecCChH-HcchHHHHHHHHhc-CCeEEEEEe
Confidence 6 666543568999999999999999999998862 22347899999999999 99999999999987 667888889
Q ss_pred ecCCC----CcccchhHHhcc
Q 006697 614 SREGS----QKEYVQHKMMDK 630 (635)
Q Consensus 614 SR~~~----~k~yVQd~l~~~ 630 (635)
||+.. ..+||++.+.+.
T Consensus 164 s~~~~~~~~~~g~v~~~l~~~ 184 (253)
T cd06221 164 DRAEEGWTGNVGLVTDLLPEL 184 (253)
T ss_pred CCCCCCccCCccccchhHHhc
Confidence 97653 457888877653
No 59
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=99.81 E-value=4.7e-19 Score=167.86 Aligned_cols=143 Identities=24% Similarity=0.317 Sum_probs=117.2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~ 162 (635)
|++|.|+|+|+|||||.+|+.|+++|.+. ++++.+.......... +..++.+++++||+|.|+.|+++.+|+
T Consensus 1 M~ki~Ivy~S~tGnTe~vA~~i~~~l~~~--~~~~~~~~~~~~~~~~------~~~~d~~~~g~~t~~~ge~~~~~~~f~ 72 (151)
T COG0716 1 MMKILIVYGSRTGNTEKVAEIIAEELGAD--GFEVDIDIRPGIKDDL------LESYDELLLGTPTWGAGELPDDWYDFI 72 (151)
T ss_pred CCeEEEEEEcCCCcHHHHHHHHHHHhccC--CceEEEeecCCcchhh------hccCCEEEEEeCCCCCCcCCccHHHHH
Confidence 58999999999999999999999999987 7777444333333222 347899999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCceEEEEEecCcchhH-HHHHHHHHHHHHHHCC--CEEeecceee--cCC--CCchHHHHHHHHHH
Q 006697 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEH-FNKIGIVLDEELCKQG--GARLVPLGLG--DDD--QCIEDDFTAWRELV 235 (635)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~-f~~~~k~ld~~L~~lG--a~~v~~~g~g--D~~--~~~e~~f~~W~~~l 235 (635)
..+.... +++++||+||+||+.|.. ||.++..+.+.++..| +....+.... |.. +..++....|.+++
T Consensus 73 ~~~~~~~-----~~~k~~a~~g~gd~~~~~~fc~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~e~~~~~~~~w~~~~ 147 (151)
T COG0716 73 EELEPID-----FKGKLVAVFGLGDQSYYGYFCEAGGNFEDILEEKGAKAVGILETLGYIFDASPNEEDEKRIKEWVKQI 147 (151)
T ss_pred HHhcccC-----cCCceEEEEeccccccchHHHHHHHHHHHHHHHcCccccccccccceeccCCCCCccHHHHHHHHHHH
Confidence 9998733 899999999999999976 9999999999999999 5555554444 333 26789999999988
Q ss_pred HHH
Q 006697 236 WPE 238 (635)
Q Consensus 236 ~~~ 238 (635)
+..
T Consensus 148 ~~~ 150 (151)
T COG0716 148 LNE 150 (151)
T ss_pred Hhh
Confidence 654
No 60
>PRK05713 hypothetical protein; Provisional
Probab=99.80 E-value=1.5e-19 Score=191.27 Aligned_cols=139 Identities=17% Similarity=0.192 Sum_probs=117.0
Q ss_pred CChhhHHHHhcCCCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEeeCC-
Q 006697 456 PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS- 534 (635)
Q Consensus 456 ~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~g- 534 (635)
..+|||+.+..+....|+|||+|.|.. .+.++|+|+.+. .|.+|+||.++++| ++|.+.+|.|
T Consensus 119 ~~~GQfv~l~~~~~~~R~ySias~p~~-~~~l~~~I~~~~---------~G~~s~~l~~l~~G------d~v~l~~p~gg 182 (312)
T PRK05713 119 YRAGQHLVLWTAGGVARPYSLASLPGE-DPFLEFHIDCSR---------PGAFCDAARQLQVG------DLLRLGELRGG 182 (312)
T ss_pred cCCCCEEEEecCCCcccccccCcCCCC-CCeEEEEEEEcC---------CCccchhhhcCCCC------CEEEEccCCCC
Confidence 468999887656556899999999864 578999998754 69999999999999 8999999987
Q ss_pred CCcCCCC-CCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEE
Q 006697 535 NFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (635)
Q Consensus 535 ~F~lp~~-~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~ 613 (635)
.|.++.+ ..+|+||||+|||||||+||+++.+. .+ ...+++|+||+|+.+ |++|.+||++|+++..+++++.+.
T Consensus 183 ~~~~~~~~~~~~~vlIAgGtGiaP~~s~l~~~~~---~~-~~~~v~l~~g~r~~~-d~~~~~el~~l~~~~~~~~~~~~~ 257 (312)
T PRK05713 183 ALHYDPDWQERPLWLLAAGTGLAPLWGILREALR---QG-HQGPIRLLHLARDSA-GHYLAEPLAALAGRHPQLSVELVT 257 (312)
T ss_pred ceEecCCCCCCcEEEEecCcChhHHHHHHHHHHh---cC-CCCcEEEEEEcCchH-HhhhHHHHHHHHHHCCCcEEEEEE
Confidence 6666644 46899999999999999999998765 22 346899999999999 999999999999887778888777
Q ss_pred ec
Q 006697 614 SR 615 (635)
Q Consensus 614 SR 615 (635)
++
T Consensus 258 ~~ 259 (312)
T PRK05713 258 AA 259 (312)
T ss_pred Cc
Confidence 64
No 61
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.80 E-value=2.5e-19 Score=182.91 Aligned_cols=141 Identities=18% Similarity=0.273 Sum_probs=119.6
Q ss_pred CChhhHHHHhcC--C---CCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhh-cCCCCCCCCccEEEE
Q 006697 456 PPIGVFFAAVAP--H---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPI 529 (635)
Q Consensus 456 ~p~~~ll~~~~p--~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i 529 (635)
..+||++.+.++ . ...|+|||+|.|.. +.++|+|+.+. .|.+|+||++ +++| +.+.|
T Consensus 37 ~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~--~~l~~~ik~~~---------~G~~s~~l~~~~~~G------d~v~i 99 (247)
T cd06184 37 FLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG--DYYRISVKREP---------GGLVSNYLHDNVKVG------DVLEV 99 (247)
T ss_pred CCCCCEEEEEEecCCCCCceeEEeEeccCCCC--CeEEEEEEEcC---------CCcchHHHHhcCCCC------CEEEE
Confidence 467888877643 2 45799999999854 48999888643 5999999998 9999 89999
Q ss_pred EeeCCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEE
Q 006697 530 FIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISEL 609 (635)
Q Consensus 530 ~~~~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l 609 (635)
.+|.|.|.++.+..+++||||+|||||||+++++++... ....+++||||+|+++ +.+|.+||+++++.+.++++
T Consensus 100 ~gP~G~~~~~~~~~~~llliagGtGiaP~~~~l~~~~~~----~~~~~i~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~ 174 (247)
T cd06184 100 SAPAGDFVLDEASDRPLVLISAGVGITPMLSMLEALAAE----GPGRPVTFIHAARNSA-VHAFRDELEELAARLPNLKL 174 (247)
T ss_pred EcCCCceECCCCCCCcEEEEeccccHhHHHHHHHHHHhc----CCCCcEEEEEEcCchh-hHHHHHHHHHHHhhCCCeEE
Confidence 999999999865567999999999999999999998752 1457899999999998 89999999999988778899
Q ss_pred EEEEecCCC
Q 006697 610 ILAFSREGS 618 (635)
Q Consensus 610 ~~a~SR~~~ 618 (635)
++++||+..
T Consensus 175 ~~~~s~~~~ 183 (247)
T cd06184 175 HVFYSEPEA 183 (247)
T ss_pred EEEECCCCc
Confidence 999998643
No 62
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.80 E-value=1.5e-19 Score=191.36 Aligned_cols=155 Identities=11% Similarity=0.094 Sum_probs=122.7
Q ss_pred CChhhHHHHhcC-C-----CCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEE
Q 006697 456 PPIGVFFAAVAP-H-----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPI 529 (635)
Q Consensus 456 ~p~~~ll~~~~p-~-----l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i 529 (635)
..+||++.+..+ . ...|+|||+|+|.. ++.++|+|+++. .|.+|+||+++++| +.|.|
T Consensus 82 f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~-~~~le~~IK~~~---------~G~~S~~L~~lk~G------d~v~v 145 (325)
T PTZ00274 82 LKPCSTLQACYKYGVQPMDQCQRFYTPVTANHT-KGYFDIIVKRKK---------DGLMTNHLFGMHVG------DKLLF 145 (325)
T ss_pred CCCccEEEEEEecCCCCCCEEEEeeecCCCCCC-CCeEEEEEEEcC---------CCcccHHHhcCCCC------CEEEE
Confidence 467888775433 1 23699999999865 578999999865 69999999999999 99999
Q ss_pred EeeCCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhc--CCCCCcEEEEEeecCCCcccccHHHHHHHHHcCC-c
Q 006697 530 FIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQD--GAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV-I 606 (635)
Q Consensus 530 ~~~~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~--g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~-~ 606 (635)
.+|.+.|.++.+..+|+||||+|||||||++|+++.++.... +....+++|+||+|+.+ |.+|++||+++++... .
T Consensus 146 ~GP~f~~~~~~~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R~~~-di~~~~eL~~La~~~~~~ 224 (325)
T PTZ00274 146 RSVTFKIQYRPNRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNRTER-HILLKGLFDDLARRYSNR 224 (325)
T ss_pred eCCeeecccCCCCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcCCHH-HhhHHHHHHHHHHhCCCc
Confidence 998777766555557999999999999999999998753210 11235899999999998 9999999999998765 5
Q ss_pred cEEEEEEecCCC------CcccchhHH
Q 006697 607 SELILAFSREGS------QKEYVQHKM 627 (635)
Q Consensus 607 ~~l~~a~SR~~~------~k~yVQd~l 627 (635)
++++.++|++.. ..++|.+.+
T Consensus 225 f~v~~~ls~~~~~~~w~g~~G~V~~~l 251 (325)
T PTZ00274 225 FKVYYTIDQAVEPDKWNHFLGYVTKEM 251 (325)
T ss_pred EEEEEEeCCCCcccCCCCCCCccCHHH
Confidence 788888887422 347887654
No 63
>PRK09267 flavodoxin FldA; Validated
Probab=99.80 E-value=1.6e-18 Score=167.27 Aligned_cols=142 Identities=25% Similarity=0.450 Sum_probs=117.7
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~ 162 (635)
+|+|+|+|+|+||||+++|+.|++.+.. ..++++++.+.+..+ +..++.+||++|||+.|.+|+.+..|+
T Consensus 1 mmki~IiY~S~tGnT~~vA~~Ia~~l~~----~~~~~~~~~~~~~~~------l~~~d~vi~g~pt~~~G~~~~~~~~fl 70 (169)
T PRK09267 1 MAKIGIFFGSDTGNTEDIAKMIQKKLGK----DVADVVDIAKASKED------FEAYDLLILGIPTWGYGELQCDWDDFL 70 (169)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHhCC----CceEEEEhhhCCHhh------HhhCCEEEEEecCcCCCCCCHHHHHHH
Confidence 4689999999999999999999999963 247888998876555 789999999999999999999999999
Q ss_pred HHHhcCCCCCCCCCCceEEEEEecCcc-h-hHHHHHHHHHHHHHHHCCCEEeecc---eee-----------------cC
Q 006697 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQ-Y-EHFNKIGIVLDEELCKQGGARLVPL---GLG-----------------DD 220 (635)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~-Y-~~f~~~~k~ld~~L~~lGa~~v~~~---g~g-----------------D~ 220 (635)
+.+.... |+++++++||+||+. | ++||.+.+.+.+.|++.|++.+..+ |.. |.
T Consensus 71 ~~~~~~~-----l~~k~vaifg~g~~~~~~~~~~~~~~~l~~~l~~~g~~~vg~~~~~gy~~~~~~~~~~~~~~g~~~d~ 145 (169)
T PRK09267 71 PELEEID-----FSGKKVALFGLGDQEDYAEYFCDAMGTLYDIVEPRGATIVGHWPTDGYTFEASKAVDDGKFVGLALDE 145 (169)
T ss_pred HHHhcCC-----CCCCEEEEEecCCCCcchHHHHHHHHHHHHHHHHCCCEEECccCCCCccccccceeeCCEEEEEEecC
Confidence 9885543 889999999999985 8 8999999999999999999877652 111 11
Q ss_pred CC---CchHHHHHHHHHHHHHH
Q 006697 221 DQ---CIEDDFTAWRELVWPEL 239 (635)
Q Consensus 221 ~~---~~e~~f~~W~~~l~~~L 239 (635)
+. -.++.+++|.++|.+++
T Consensus 146 ~~~~~~td~~i~~w~~~i~~~~ 167 (169)
T PRK09267 146 DNQSELTDERIEAWVKQIKPEF 167 (169)
T ss_pred CCchhhhHHHHHHHHHHHHHHh
Confidence 11 13688899999987664
No 64
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.79 E-value=3.6e-19 Score=179.67 Aligned_cols=150 Identities=20% Similarity=0.287 Sum_probs=122.7
Q ss_pred CCChhhHHHHhcCC---CCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHh-hcCCCCCCCCccEEEEE
Q 006697 455 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 530 (635)
Q Consensus 455 ~~p~~~ll~~~~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~i~ 530 (635)
...+||++.+.+|. ...|+|||+|.|.. .+.++|+|+... .|.+|.||+ ++++| +.+.|.
T Consensus 27 ~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~-~~~l~~~vk~~~---------~G~~s~~l~~~~~~G------~~v~i~ 90 (231)
T cd06215 27 AYKPGQFLTLELEIDGETVYRAYTLSSSPSR-PDSLSITVKRVP---------GGLVSNWLHDNLKVG------DELWAS 90 (231)
T ss_pred CcCCCCeEEEEEecCCCeEEEeeecccCCCC-CCcEEEEEEEcC---------CCcchHHHHhcCCCC------CEEEEE
Confidence 34688988876542 24799999999864 567999998853 589999997 59999 899999
Q ss_pred eeCCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEE
Q 006697 531 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 610 (635)
Q Consensus 531 ~~~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~ 610 (635)
+|.|.|.++....+++||||+|||||||++++++... .+ ...+++||||+|+++ |++|.++|++++++...++++
T Consensus 91 gP~G~f~~~~~~~~~~vlIagG~Giap~~~~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~~ 165 (231)
T cd06215 91 GPAGEFTLIDHPADKLLLLSAGSGITPMMSMARWLLD---TR-PDADIVFIHSARSPA-DIIFADELEELARRHPNFRLH 165 (231)
T ss_pred cCcceeEeCCCCCCcEEEEecCcCcchHHHHHHHHHh---cC-CCCcEEEEEecCChh-hhhHHHHHHHHHHHCCCeEEE
Confidence 9999999875546899999999999999999999875 22 346899999999998 999999999999887777888
Q ss_pred EEEecCCC-----Ccccchh
Q 006697 611 LAFSREGS-----QKEYVQH 625 (635)
Q Consensus 611 ~a~SR~~~-----~k~yVQd 625 (635)
++.+++.. ..++++.
T Consensus 166 ~~~~~~~~~~~~~~~g~~~~ 185 (231)
T cd06215 166 LILEQPAPGAWGGYRGRLNA 185 (231)
T ss_pred EEEccCCCCcccccCCcCCH
Confidence 88888544 2355654
No 65
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.79 E-value=3.4e-19 Score=181.62 Aligned_cols=149 Identities=23% Similarity=0.374 Sum_probs=123.4
Q ss_pred CChhhHHHHhcC---CCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhh-cCCCCCCCCccEEEEEe
Q 006697 456 PPIGVFFAAVAP---HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFI 531 (635)
Q Consensus 456 ~p~~~ll~~~~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~ 531 (635)
..+||++.+.++ ...+|+|||+|.|....+.++|+|+.+. .|.+|.||++ +++| +.|.|.+
T Consensus 46 ~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~~~---------~G~~s~~l~~~~~~G------d~v~i~g 110 (243)
T cd06216 46 HRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKAQP---------DGLVSNWLVNHLAPG------DVVELSQ 110 (243)
T ss_pred cCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEEcC---------CCcchhHHHhcCCCC------CEEEEEC
Confidence 467999887643 2347999999988512578999999853 5889999986 8999 8999999
Q ss_pred eCCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEE
Q 006697 532 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 611 (635)
Q Consensus 532 ~~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~ 611 (635)
|.|.|.++.+..+++||||+||||||+++++++... .+ ...+++||||+|+.+ |.+|.+||+++++++.++++++
T Consensus 111 P~G~f~l~~~~~~~~v~iagG~Giap~~s~l~~~~~---~~-~~~~i~l~~~~r~~~-~~~~~~el~~l~~~~~~~~~~~ 185 (243)
T cd06216 111 PQGDFVLPDPLPPRLLLIAAGSGITPVMSMLRTLLA---RG-PTADVVLLYYARTRE-DVIFADELRALAAQHPNLRLHL 185 (243)
T ss_pred CceeeecCCCCCCCEEEEecCccHhHHHHHHHHHHh---cC-CCCCEEEEEEcCChh-hhHHHHHHHHHHHhCCCeEEEE
Confidence 999999987656899999999999999999999865 22 357899999999998 9999999999998877788888
Q ss_pred EEecCCCCcccchh
Q 006697 612 AFSREGSQKEYVQH 625 (635)
Q Consensus 612 a~SR~~~~k~yVQd 625 (635)
.+|++ ..+++++.
T Consensus 186 ~~s~~-~~~g~~~~ 198 (243)
T cd06216 186 LYTRE-ELDGRLSA 198 (243)
T ss_pred EEcCC-ccCCCCCH
Confidence 99986 34455543
No 66
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.79 E-value=5e-19 Score=182.78 Aligned_cols=147 Identities=20% Similarity=0.277 Sum_probs=119.3
Q ss_pred CChhhHHHHhcCCCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEeeCCC
Q 006697 456 PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSN 535 (635)
Q Consensus 456 ~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~g~ 535 (635)
..+|||+.+-+|...+|+|||++.+ .+.++|+|+. .|.+|+||.++++| +.|.|.+|.|+
T Consensus 33 ~~pGQfi~l~~~~~~~~pySi~~~~---~~~~~~~Ik~-----------~G~~S~~L~~l~~G------d~v~v~gP~G~ 92 (263)
T PRK08221 33 VKPGQFFEVSLPKVGEAPISVSDYG---DGYIDLTIRR-----------VGKVTDEIFNLKEG------DKLFLRGPYGN 92 (263)
T ss_pred CCCCceEEEEeCCCCcceeeccCCC---CCEEEEEEEe-----------CCchhhHHHhCCCC------CEEEEECCCCC
Confidence 4689999887676667999999875 4789999976 48999999999999 89999999996
Q ss_pred -CcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEEe
Q 006697 536 -FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFS 614 (635)
Q Consensus 536 -F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~S 614 (635)
|.++....+|+||||+|||||||+||+++... .+....+++||||+|+.+ |.+|++||++|++.. .++++++
T Consensus 93 ~f~~~~~~~~~~llIAgGtGItP~~sil~~~~~---~~~~~~~v~L~~g~r~~~-~l~~~~el~~~~~~~---~~~~~~~ 165 (263)
T PRK08221 93 GFPVDTYKGKELIVVAGGTGVAPVKGLMRYFYE---NPQEIKSLDLILGFKNPD-DILFKEDLKRWREKI---NLILTLD 165 (263)
T ss_pred CcccCccCCccEEEEcccccHHHHHHHHHHHHh---CcccCceEEEEEecCCHH-HhhHHHHHHHHhhcC---cEEEEec
Confidence 88876566899999999999999999999864 222346899999999998 999999999998753 3455566
Q ss_pred cCCC----CcccchhHHhc
Q 006697 615 REGS----QKEYVQHKMMD 629 (635)
Q Consensus 615 R~~~----~k~yVQd~l~~ 629 (635)
++.. ..++|++.+.+
T Consensus 166 ~~~~~~~~~~G~v~~~l~~ 184 (263)
T PRK08221 166 EGEEGYRGNVGLVTKYIPE 184 (263)
T ss_pred CCCCCCccCccccChhhHh
Confidence 5432 35788776544
No 67
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.78 E-value=9.1e-19 Score=180.29 Aligned_cols=136 Identities=20% Similarity=0.298 Sum_probs=114.9
Q ss_pred CChhhHHHHhcCCC---CccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHh-hcCCCCCCCCccEEEEEe
Q 006697 456 PPIGVFFAAVAPHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIFI 531 (635)
Q Consensus 456 ~p~~~ll~~~~p~l---~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~i~~ 531 (635)
+.+|||+.+-++.- ..|.|||+|+|.. ++.+.|+|++.. .|..|+||+ ++++| |+|.|..
T Consensus 35 f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~-~~~~~isVk~~~---------~G~~S~~Lh~~lk~G------d~l~v~~ 98 (266)
T COG1018 35 FEPGQYITVGLPNGGEPLLRAYSLSSAPDE-DSLYRISVKRED---------GGGGSNWLHDHLKVG------DTLEVSA 98 (266)
T ss_pred cCCCCeEEEEecCCCceeeEEEEeccCCCC-CceEEEEEEEeC---------CCcccHHHHhcCCCC------CEEEEec
Confidence 46889988876643 6799999999976 468999999864 499999999 69999 9999999
Q ss_pred eCCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEE
Q 006697 532 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELIL 611 (635)
Q Consensus 532 ~~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~ 611 (635)
|.|.|.++..+..|++||++|||||||+||+++... .+ . .++.|+|++|+.+ |..|+|| +.++.+..+...+.
T Consensus 99 P~G~F~l~~~~~~~~llla~G~GITP~lSml~~~~~---~~-~-~~v~l~h~~R~~~-~~af~de-~~l~~~~~~~~~~~ 171 (266)
T COG1018 99 PAGDFVLDDLPERKLLLLAGGIGITPFLSMLRTLLD---RG-P-ADVVLVHAARTPA-DLAFRDE-LELAAELPNALLLG 171 (266)
T ss_pred CCCCccCCCCCCCcEEEEeccccHhHHHHHHHHHHH---hC-C-CCEEEEEecCChh-hcchhhH-HHHHhhCCCCeeEE
Confidence 999999998777799999999999999999999876 33 4 8999999999999 9999999 88888766533333
Q ss_pred EEe
Q 006697 612 AFS 614 (635)
Q Consensus 612 a~S 614 (635)
.+.
T Consensus 172 ~~~ 174 (266)
T COG1018 172 LYT 174 (266)
T ss_pred EEE
Confidence 333
No 68
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.78 E-value=9.4e-19 Score=176.75 Aligned_cols=153 Identities=18% Similarity=0.224 Sum_probs=125.6
Q ss_pred CCChhhHHHHhcCC---CCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEe
Q 006697 455 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 531 (635)
Q Consensus 455 ~~p~~~ll~~~~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~ 531 (635)
...+||++.+.+|. ...|+|||+|.+.. .+.++|+|+.++ .|.+|.||+++++| ++|.|.+
T Consensus 28 ~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~-~~~~~~~v~~~~---------~G~~s~~l~~~~~G------~~v~i~g 91 (234)
T cd06183 28 GLPVGQHVELKAPDDGEQVVRPYTPISPDDD-KGYFDLLIKIYP---------GGKMSQYLHSLKPG------DTVEIRG 91 (234)
T ss_pred CCCcccEEEEEecCCCcccccccccccCCCc-CCEEEEEEEECC---------CCcchhHHhcCCCC------CEEEEEC
Confidence 35789998887554 46799999998864 467999998753 59999999999999 8999999
Q ss_pred eCCCCcCCCCCC-CcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHc-CCccEE
Q 006697 532 RPSNFKLPANPS-VPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEE-GVISEL 609 (635)
Q Consensus 532 ~~g~F~lp~~~~-~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~-g~~~~l 609 (635)
|.|.|.++.+.. .++||||+||||||+++++++.... +....+++|+||+|+.+ |.+|.+||+++.+. ...+++
T Consensus 92 P~G~~~~~~~~~~~~~vliagGtGiaP~~~~l~~~~~~---~~~~~~i~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~ 167 (234)
T cd06183 92 PFGKFEYKPNGKVKHIGMIAGGTGITPMLQLIRAILKD---PEDKTKISLLYANRTEE-DILLREELDELAKKHPDRFKV 167 (234)
T ss_pred CccceeecCCCCccEEEEEcCCcchhHHHHHHHHHHhC---cCcCcEEEEEEecCCHH-HhhhHHHHHHHHHhCcccEEE
Confidence 999998876554 7999999999999999999998752 11357899999999998 99999999999887 356678
Q ss_pred EEEEecCCC----CcccchhHH
Q 006697 610 ILAFSREGS----QKEYVQHKM 627 (635)
Q Consensus 610 ~~a~SR~~~----~k~yVQd~l 627 (635)
++++|+++. ..++|++.+
T Consensus 168 ~~~~~~~~~~~~~~~g~~~~~~ 189 (234)
T cd06183 168 HYVLSRPPEGWKGGVGFITKEM 189 (234)
T ss_pred EEEEcCCCcCCccccceECHHH
Confidence 888887543 357887654
No 69
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.78 E-value=6.9e-19 Score=189.23 Aligned_cols=142 Identities=20% Similarity=0.315 Sum_probs=118.0
Q ss_pred CCChhhHHHHhcC---CCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHh-hcCCCCCCCCccEEEEE
Q 006697 455 TPPIGVFFAAVAP---HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 530 (635)
Q Consensus 455 ~~p~~~ll~~~~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~i~ 530 (635)
...+|||+.+.++ ....|+|||+|+|. .+.++|+|+.+. .|.+|+||. ++++| +.|.|.
T Consensus 32 ~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~--~~~l~i~vk~~~---------~G~~S~~l~~~l~~G------d~v~v~ 94 (352)
T TIGR02160 32 RFAPGQHLTLRREVDGEELRRSYSICSAPA--PGEIRVAVKKIP---------GGLFSTWANDEIRPG------DTLEVM 94 (352)
T ss_pred CCCCCCeEEEEEecCCcEeeeeccccCCCC--CCcEEEEEEEeC---------CCcchHHHHhcCCCC------CEEEEe
Confidence 3468999988753 22469999999984 478999999864 589999997 59999 899999
Q ss_pred eeCCCCcCCCCC--CCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCC-cc
Q 006697 531 IRPSNFKLPANP--SVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV-IS 607 (635)
Q Consensus 531 ~~~g~F~lp~~~--~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~-~~ 607 (635)
+|.|+|.++.+. .+++||||+|||||||++|+++.+.. + ...+++||||+|+++ |.+|.+||+++++... .+
T Consensus 95 gP~G~f~~~~~~~~~~~~lliagG~GItP~~s~l~~~~~~---~-~~~~v~l~~~~r~~~-d~~~~~el~~l~~~~~~~~ 169 (352)
T TIGR02160 95 APQGLFTPDLSTPHAGHYVAVAAGSGITPMLSIAETVLAA---E-PRSTFTLVYGNRRTA-SVMFAEELADLKDKHPQRF 169 (352)
T ss_pred CCceeeecCCCccccccEEEEeccccHhHHHHHHHHHHhc---C-CCceEEEEEEeCCHH-HHHHHHHHHHHHHhCcCcE
Confidence 999999886542 37999999999999999999998752 2 347899999999998 9999999999987755 47
Q ss_pred EEEEEEecCCC
Q 006697 608 ELILAFSREGS 618 (635)
Q Consensus 608 ~l~~a~SR~~~ 618 (635)
+++.++||+..
T Consensus 170 ~~~~~~s~~~~ 180 (352)
T TIGR02160 170 HLAHVLSREPR 180 (352)
T ss_pred EEEEEecCCCc
Confidence 88889998653
No 70
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.77 E-value=1.2e-18 Score=177.08 Aligned_cols=142 Identities=24% Similarity=0.353 Sum_probs=118.7
Q ss_pred CCChhhHHHHhcCC---CCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHh-hcCCCCCCCCccEEEEE
Q 006697 455 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 530 (635)
Q Consensus 455 ~~p~~~ll~~~~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~i~ 530 (635)
...+||++.+.+|. ..+|+|||+|.+.. +.++|+|+.+. .|.+|.||. ++++| +.+.|.
T Consensus 32 ~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~--~~l~~~i~~~~---------~G~~s~~l~~~~~~G------~~v~i~ 94 (241)
T cd06214 32 RYRPGQFLTLRVPIDGEEVRRSYSICSSPGD--DELRITVKRVP---------GGRFSNWANDELKAG------DTLEVM 94 (241)
T ss_pred CcCCCCeEEEEeecCCCeeeeeeeecCCCCC--CcEEEEEEEcC---------CCccchhHHhccCCC------CEEEEe
Confidence 45789999988542 36799999998764 37999998754 599999998 69999 899999
Q ss_pred eeCCCCcCCCC-CCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCC-ccE
Q 006697 531 IRPSNFKLPAN-PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV-ISE 608 (635)
Q Consensus 531 ~~~g~F~lp~~-~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~-~~~ 608 (635)
+|.|.|.++.+ ..+++||||+|||||||+++++++.. .+ ...+++|+||+|+.. |++|.+||+++.+... .++
T Consensus 95 gP~G~~~~~~~~~~~~~llia~GtGiap~~~~~~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~~~~~~ 169 (241)
T cd06214 95 PPAGRFTLPPLPGARHYVLFAAGSGITPVLSILKTALA---RE-PASRVTLVYGNRTEA-SVIFREELADLKARYPDRLT 169 (241)
T ss_pred CCccccccCCCCCCCcEEEEecccChhhHHHHHHHHHh---cC-CCCcEEEEEEeCCHH-HhhHHHHHHHHHHhCcCceE
Confidence 99999988865 46899999999999999999999875 22 357899999999998 9999999999987654 667
Q ss_pred EEEEEecCCC
Q 006697 609 LILAFSREGS 618 (635)
Q Consensus 609 l~~a~SR~~~ 618 (635)
+..++|+++.
T Consensus 170 ~~~~~~~~~~ 179 (241)
T cd06214 170 VIHVLSREQG 179 (241)
T ss_pred EEEEecCCCC
Confidence 8888887654
No 71
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.77 E-value=1.2e-18 Score=179.82 Aligned_cols=147 Identities=16% Similarity=0.230 Sum_probs=118.4
Q ss_pred CChhhHHHHhcCCCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEeeCCC
Q 006697 456 PPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSN 535 (635)
Q Consensus 456 ~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~g~ 535 (635)
..+|||+.+.+|...+|+|||+|.+ .+.++|+|+. .|.+|++|.++++| +.|.|.+|.|+
T Consensus 31 ~~pGQ~v~l~~~~~~~~pySi~~~~---~~~l~~~Vk~-----------~G~~S~~L~~l~~G------d~v~i~gP~G~ 90 (261)
T TIGR02911 31 VKPGQFFEVSLPKYGEAPISVSGIG---EGYIDLTIRR-----------VGKVTDEVFTLKEG------DNLFLRGPYGN 90 (261)
T ss_pred CCCCcEEEEEecCCCccceecCCCC---CCeEEEEEEe-----------CchhhHHHHcCCCC------CEEEEecCCCC
Confidence 4689999987677778999999853 4789999986 58999999999999 89999999996
Q ss_pred -CcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEEe
Q 006697 536 -FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFS 614 (635)
Q Consensus 536 -F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~S 614 (635)
|.++.+..+|+||||+||||||+++++++... ++....+++||||+|+.+ |++|.+||++|++.. ++...++
T Consensus 91 ~f~~~~~~~~~~llIAgGtGIaP~~sil~~l~~---~~~~~~~v~L~~~~r~~~-~~~~~~eL~~l~~~~---~~~~~~~ 163 (261)
T TIGR02911 91 GFDVDNYKHKELVVVAGGTGVAPVKGVVEYFVK---NPKEIKSLNLILGFKTPD-DILFKEDIAEWKGNI---NLTLTLD 163 (261)
T ss_pred CcccCccCCceEEEEecccCcHHHHHHHHHHHh---CcccCceEEEEEecCCHH-HhhHHHHHHHHHhcC---cEEEEEc
Confidence 88876556899999999999999999998764 222346899999999999 999999999998753 2344455
Q ss_pred cCCC----CcccchhHHhc
Q 006697 615 REGS----QKEYVQHKMMD 629 (635)
Q Consensus 615 R~~~----~k~yVQd~l~~ 629 (635)
++.. ..+||++.+.+
T Consensus 164 ~~~~~~~~~~g~v~~~l~~ 182 (261)
T TIGR02911 164 EAEEDYKGNIGLVTKYIPE 182 (261)
T ss_pred CCCCCCcCCeeccCHhHHh
Confidence 4322 34688876653
No 72
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.77 E-value=1.4e-18 Score=173.78 Aligned_cols=138 Identities=22% Similarity=0.280 Sum_probs=116.4
Q ss_pred CCChhhHHHHhcCC---CCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHh-hcCCCCCCCCccEEEEE
Q 006697 455 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK-NAIPLEGNGDCSWAPIF 530 (635)
Q Consensus 455 ~~p~~~ll~~~~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~-~l~~g~~~~~~~~v~i~ 530 (635)
...+||++.+-++. ...|+|||+|.|.. .+.++|+|+. .|.+|++|. ++++| +.|.|.
T Consensus 22 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~l~l~vk~-----------~G~~t~~l~~~l~~G------~~v~i~ 83 (216)
T cd06198 22 GHRAGQFAFLRFDASGWEEPHPFTISSAPDP-DGRLRFTIKA-----------LGDYTRRLAERLKPG------TRVTVE 83 (216)
T ss_pred CcCCCCEEEEEeCCCCCCCCCCcEEecCCCC-CCeEEEEEEe-----------CChHHHHHHHhCCCC------CEEEEE
Confidence 34689998887553 56899999998864 4689999986 478999999 79999 899999
Q ss_pred eeCCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEE
Q 006697 531 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 610 (635)
Q Consensus 531 ~~~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~ 610 (635)
+|.|.|.++.. .+++||||+||||||+++++++... ++ ..++++|+||+|+.+ |.+|.+||+++.+.. +++++
T Consensus 84 gP~G~~~~~~~-~~~~vlia~GtGiap~~~~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~~l~~l~~~~-~~~~~ 156 (216)
T cd06198 84 GPYGRFTFDDR-RARQIWIAGGIGITPFLALLEALAA---RG-DARPVTLFYCVRDPE-DAVFLDELRALAAAA-GVVLH 156 (216)
T ss_pred CCCCCCccccc-CceEEEEccccCHHHHHHHHHHHHh---cC-CCceEEEEEEECCHH-HhhhHHHHHHHHHhc-CeEEE
Confidence 99999998765 6899999999999999999999875 22 357999999999999 999999999998877 66777
Q ss_pred EEEecCC
Q 006697 611 LAFSREG 617 (635)
Q Consensus 611 ~a~SR~~ 617 (635)
+..++++
T Consensus 157 ~~~~~~~ 163 (216)
T cd06198 157 VIDSPSD 163 (216)
T ss_pred EEeCCCC
Confidence 7666543
No 73
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.77 E-value=1.7e-18 Score=175.26 Aligned_cols=151 Identities=21% Similarity=0.272 Sum_probs=123.4
Q ss_pred CChhhHHHHhcC--CC--CccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhh-cCCCCCCCCccEEEEE
Q 006697 456 PPIGVFFAAVAP--HL--QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIF 530 (635)
Q Consensus 456 ~p~~~ll~~~~p--~l--~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~ 530 (635)
..+||++.+.+| .- ..|+|||+|.|.. .+.++|+|+.+. .|.+|.||.+ +++| +.|.|.
T Consensus 31 ~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~~l~l~v~~~~---------~G~~s~~l~~~l~~G------d~v~i~ 94 (235)
T cd06217 31 FLAGQHVDLRLTAIDGYTAQRSYSIASSPTQ-RGRVELTVKRVP---------GGEVSPYLHDEVKVG------DLLEVR 94 (235)
T ss_pred cCCcCeEEEEEecCCCceeeeeecccCCCCC-CCeEEEEEEEcC---------CCcchHHHHhcCCCC------CEEEEe
Confidence 467999888754 21 2499999999865 468999998753 5889999986 8899 899999
Q ss_pred eeCCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEE
Q 006697 531 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 610 (635)
Q Consensus 531 ~~~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~ 610 (635)
+|.|.|.++....+++||||+||||||+++++++... ++ ...+++|+||+|+.+ |.+|.+||.+++++..+++++
T Consensus 95 gP~G~~~~~~~~~~~~vliagG~Giap~~~~~~~~~~---~~-~~~~i~l~~~~r~~~-~~~~~~el~~~~~~~~~~~~~ 169 (235)
T cd06217 95 GPIGTFTWNPLHGDPVVLLAGGSGIVPLMSMIRYRRD---LG-WPVPFRLLYSARTAE-DVIFRDELEQLARRHPNLHVT 169 (235)
T ss_pred CCceeeEeCCCCCceEEEEecCcCccHHHHHHHHHHh---cC-CCceEEEEEecCCHH-HhhHHHHHHHHHHHCCCeEEE
Confidence 9999998865446799999999999999999999875 22 457899999999998 899999999999887778889
Q ss_pred EEEecCCC-----CcccchhHH
Q 006697 611 LAFSREGS-----QKEYVQHKM 627 (635)
Q Consensus 611 ~a~SR~~~-----~k~yVQd~l 627 (635)
.++||+.. .++++++.+
T Consensus 170 ~~~s~~~~~~~~~~~g~~~~~~ 191 (235)
T cd06217 170 EALTRAAPADWLGPAGRITADL 191 (235)
T ss_pred EEeCCCCCCCcCCcCcEeCHHH
Confidence 89998622 346666544
No 74
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.76 E-value=2.1e-18 Score=176.34 Aligned_cols=144 Identities=18% Similarity=0.274 Sum_probs=115.8
Q ss_pred CChhhHHHHhcCC----CCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEe
Q 006697 456 PPIGVFFAAVAPH----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 531 (635)
Q Consensus 456 ~p~~~ll~~~~p~----l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~ 531 (635)
..+||++.+.+|. ...|+|||+|.|.. .+.++|+|+. .|.+|+||.++++| ++|.|.+
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~~l~l~v~~-----------~G~~s~~l~~l~~G------d~v~i~g 86 (246)
T cd06218 25 AKPGQFVMLRVPDGSDPLLRRPISIHDVDPE-EGTITLLYKV-----------VGKGTRLLSELKAG------DELDVLG 86 (246)
T ss_pred CCCCcEEEEEeCCCCCCcCCCceEeeeccCC-CCEEEEEEEE-----------ECcchHHHhcCCCC------CEEEEEe
Confidence 4678888887553 45799999998854 4789999886 47789999999999 8999999
Q ss_pred eCCC-CcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEE
Q 006697 532 RPSN-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 610 (635)
Q Consensus 532 ~~g~-F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~ 610 (635)
|.|. |.++. ..+++||||+|||||||++++++... ...+++|||++|+.+ |.+|++||+++.. ++.
T Consensus 87 P~G~~~~~~~-~~~~~vlIagGtGIaP~~s~l~~~~~------~~~~v~l~~~~r~~~-d~~~~~eL~~l~~-----~~~ 153 (246)
T cd06218 87 PLGNGFDLPD-DDGKVLLVGGGIGIAPLLFLAKQLAE------RGIKVTVLLGFRSAD-DLFLVEEFEALGA-----EVY 153 (246)
T ss_pred cCCCCcCCCC-CCCcEEEEecccCHHHHHHHHHHHHh------cCCceEEEEEccchh-hhhhHHHHHhhCC-----cEE
Confidence 9994 87774 56899999999999999999998865 236899999999999 9999999999843 233
Q ss_pred EEEecCC--CCcccchhHHhccc
Q 006697 611 LAFSREG--SQKEYVQHKMMDKV 631 (635)
Q Consensus 611 ~a~SR~~--~~k~yVQd~l~~~~ 631 (635)
+ ++++. ..++||++.|.+..
T Consensus 154 ~-~~~~~~~~~~g~v~~~l~~~~ 175 (246)
T cd06218 154 V-ATDDGSAGTKGFVTDLLKELL 175 (246)
T ss_pred E-EcCCCCCCcceehHHHHHHHh
Confidence 2 33433 24679999887654
No 75
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.76 E-value=2.4e-18 Score=180.91 Aligned_cols=161 Identities=16% Similarity=0.176 Sum_probs=121.2
Q ss_pred CChhhHHHHhcCC-------CCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEE
Q 006697 456 PPIGVFFAAVAPH-------LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAP 528 (635)
Q Consensus 456 ~p~~~ll~~~~p~-------l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~ 528 (635)
..+|||+.+.++. ...|+||++|+|.. ++.++|+|+.+......-....|.+|+||.++++| +.|.
T Consensus 64 ~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~-~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~G------d~v~ 136 (300)
T PTZ00319 64 LPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDE-KGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKLG------DKIE 136 (300)
T ss_pred CccceEEEEEEEeCCCCccceEEeeeccCCCccc-CCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCCC------CEEE
Confidence 4679988876442 24699999998854 67899999986211000001159999999999999 8999
Q ss_pred EEeeCCCCcCCCC---------------CCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCccccc
Q 006697 529 IFIRPSNFKLPAN---------------PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIY 593 (635)
Q Consensus 529 i~~~~g~F~lp~~---------------~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly 593 (635)
|.+|.|.|.++.+ ..+|+||||+|||||||++++++... +.....++.|+||+|+.+ |.+|
T Consensus 137 i~gP~G~f~~~~~~~~~~~~~~~~~~~~~~~~illIAgGtGIaP~~sml~~l~~---~~~~~~~i~liyg~r~~~-dl~~ 212 (300)
T PTZ00319 137 MRGPVGKFEYLGNGTYTVHKGKGGLKTMHVDAFAMIAGGTGITPMLQIIHAIKK---NKEDRTKVFLVYANQTED-DILL 212 (300)
T ss_pred EEccceeeEecCCcceeeccccccccccccceEEEEecCcccCHHHHHHHHHHh---CCCCCceEEEEEecCCHH-HhhH
Confidence 9999999866432 12489999999999999999998875 221345899999999999 9999
Q ss_pred HHHHHHHHHcCCccEEEEEEecCCC-----CcccchhHHh
Q 006697 594 EDELNNFEEEGVISELILAFSREGS-----QKEYVQHKMM 628 (635)
Q Consensus 594 ~del~~~~~~g~~~~l~~a~SR~~~-----~k~yVQd~l~ 628 (635)
.+||++++ ...+++++.+.+|+.. ..+||+..+.
T Consensus 213 ~~eL~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~v~~~~l 251 (300)
T PTZ00319 213 RKELDEAA-KDPRFHVWYTLDREATPEWKYGTGYVDEEML 251 (300)
T ss_pred HHHHHHHh-hCCCEEEEEEECCCCCCCcccccceeCHHHH
Confidence 99999955 4556788888888532 3578876543
No 76
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.76 E-value=2.4e-18 Score=172.28 Aligned_cols=135 Identities=19% Similarity=0.224 Sum_probs=111.0
Q ss_pred CCChhhHHHHhcCC----CCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEE
Q 006697 455 TPPIGVFFAAVAPH----LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIF 530 (635)
Q Consensus 455 ~~p~~~ll~~~~p~----l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~ 530 (635)
...+|||+.+.++. ...|+|||+|+|. .+.++|+|+++. . .|..|.||.++++| +.+.+.
T Consensus 27 ~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~--~~~l~~~vk~~~--~------~g~~s~~l~~l~~G------~~v~i~ 90 (218)
T cd06196 27 DFTPGQATEVAIDKPGWRDEKRPFTFTSLPE--DDVLEFVIKSYP--D------HDGVTEQLGRLQPG------DTLLIE 90 (218)
T ss_pred CCCCCCEEEEEeeCCCCCccccccccccCCC--CCeEEEEEEEcC--C------CCcHhHHHHhCCCC------CEEEEE
Confidence 35789998876442 3579999999985 378999998743 1 36779999999999 899999
Q ss_pred eeCCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEE
Q 006697 531 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 610 (635)
Q Consensus 531 ~~~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~ 610 (635)
+|.|+|.++ +|+||||+|||||||+++++++.. .+ ...+++|+||+|+.+ |++|.+||++|.. ++++
T Consensus 91 gP~G~~~~~----~~~vlia~GtGiaP~~s~l~~~~~---~~-~~~~v~l~~~~r~~~-~~~~~~el~~l~~----~~~~ 157 (218)
T cd06196 91 DPWGAIEYK----GPGVFIAGGAGITPFIAILRDLAA---KG-KLEGNTLIFANKTEK-DIILKDELEKMLG----LKFI 157 (218)
T ss_pred CCccceEec----CceEEEecCCCcChHHHHHHHHHh---CC-CCceEEEEEecCCHH-HHhhHHHHHHhhc----ceEE
Confidence 999999763 589999999999999999999875 22 446899999999998 9999999999852 4677
Q ss_pred EEEecCCC
Q 006697 611 LAFSREGS 618 (635)
Q Consensus 611 ~a~SR~~~ 618 (635)
.++||++.
T Consensus 158 ~~~s~~~~ 165 (218)
T cd06196 158 NVVTDEKD 165 (218)
T ss_pred EEEcCCCC
Confidence 78888654
No 77
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.73 E-value=2.1e-17 Score=164.56 Aligned_cols=147 Identities=19% Similarity=0.213 Sum_probs=116.4
Q ss_pred CCChhhHHHHhcCCCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhh-cCCCCCCCCccEEEEEeeC
Q 006697 455 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRP 533 (635)
Q Consensus 455 ~~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~ 533 (635)
...+||++.+.+|....|+|||+|.|.. .+.++|+|+.+. . .+.+|.||.+ +++| +.|.|.+|.
T Consensus 25 ~~~pGQ~~~l~~~~~~~r~ySi~s~~~~-~~~l~~~v~~~~--~------g~~~s~~l~~~~~~G------d~v~i~gP~ 89 (211)
T cd06185 25 AFEPGAHIDVHLPNGLVRQYSLCGDPAD-RDRYRIAVLREP--A------SRGGSRYMHELLRVG------DELEVSAPR 89 (211)
T ss_pred CCCCCceEEEEcCCCCceeeeccCCCCC-CCEEEEEEEecc--C------CCchHHHHHhcCCCC------CEEEEcCCc
Confidence 4578999998866667899999999864 588999998743 0 2347999976 7889 899999999
Q ss_pred CCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEE
Q 006697 534 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (635)
Q Consensus 534 g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~ 613 (635)
|.|.++.+ .+|+||||+||||||+++++++... ...+++||||+|+.+ |.+|.+||+++. .. .+.+.+
T Consensus 90 g~f~~~~~-~~~~v~ia~GtGiap~~~il~~~~~------~~~~v~l~~~~r~~~-~~~~~~~l~~~~--~~--~~~~~~ 157 (211)
T cd06185 90 NLFPLDEA-ARRHLLIAGGIGITPILSMARALAA------RGADFELHYAGRSRE-DAAFLDELAALP--GD--RVHLHF 157 (211)
T ss_pred cCCcCCCC-CCcEEEEeccchHhHHHHHHHHHHh------CCCCEEEEEEeCCCc-chhHHHHHhhhc--CC--cEEEEE
Confidence 99988753 5799999999999999999998764 236899999999988 889999999987 22 345556
Q ss_pred ecCCCCcccchhHHhc
Q 006697 614 SREGSQKEYVQHKMMD 629 (635)
Q Consensus 614 SR~~~~k~yVQd~l~~ 629 (635)
+++. ...++++.+.+
T Consensus 158 ~~~~-~~~~~~~~~~~ 172 (211)
T cd06185 158 DDEG-GRLDLAALLAA 172 (211)
T ss_pred CCCC-CccCHHHHhcc
Confidence 6643 34567666654
No 78
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.73 E-value=1.9e-17 Score=169.82 Aligned_cols=151 Identities=21% Similarity=0.301 Sum_probs=128.3
Q ss_pred CCChhhHHHHhcCCCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEeeCC
Q 006697 455 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS 534 (635)
Q Consensus 455 ~~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~g 534 (635)
...+|||+.+.+|....|+|||+|.+.. .+.++|.+++.. .|.+|.++..+++| +.|.+.+|.|
T Consensus 35 ~~~pGQfv~l~~~~~~~~P~si~~~~~~-~g~~~l~i~~~~---------~G~~T~~i~~~k~g------d~i~v~GP~G 98 (252)
T COG0543 35 TFKPGQFVMLRVPGGVRRPYSLASAPDD-KGELELHIRVYE---------VGKVTKYIFGLKEG------DKIRVRGPLG 98 (252)
T ss_pred ccCCCcEEEEEeCCCcEEEeeeccCCCc-CCcEEEEEEEEe---------CChHHHHHhhccCC------CEEEEEcCCC
Confidence 3689999999988889999999999865 577788777755 79999999999999 8999999999
Q ss_pred CCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEEe
Q 006697 535 NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFS 614 (635)
Q Consensus 535 ~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~S 614 (635)
++.+..+..+|+++||+|||+||+++++++... ++ ...+++++||.|++. |.++.+||+++..+ +++++.+
T Consensus 99 ~~~~~~~~~~~vlliagGtG~aPl~~i~~~~~~---~~-~~~~V~~~~G~~~~~-dl~~~~el~~~~~~----~~~~~~~ 169 (252)
T COG0543 99 NGFLREKIGKPVLLIAGGTGIAPLYAIAKELKE---KG-DANKVTLLYGARTAK-DLLLLDELEELAEK----EVHPVTD 169 (252)
T ss_pred CCccccccCCcEEEEecccCHhHHHHHHHHHHh---cC-CCceEEEEEeccChh-hcccHHHHHHhhcC----cEEEEEC
Confidence 877776677889999999999999999999875 44 558999999999999 99999999999876 4566665
Q ss_pred cCCC--Ccccc-hhHHhccc
Q 006697 615 REGS--QKEYV-QHKMMDKV 631 (635)
Q Consensus 615 R~~~--~k~yV-Qd~l~~~~ 631 (635)
+++ .++|| ++.+.+..
T Consensus 170 -~~~~G~~G~v~~~~~~~~~ 188 (252)
T COG0543 170 -DGWKGRKGFVTTDVLKELL 188 (252)
T ss_pred -CCCCccCcceeHHHHhhhc
Confidence 433 67899 88777643
No 79
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.72 E-value=1.2e-17 Score=168.04 Aligned_cols=126 Identities=17% Similarity=0.238 Sum_probs=102.3
Q ss_pred CChhhHHHHhcCCC-------------------CccccccCCCCCCC--CCeEEEEEEEEEecCCCCCcccCccchHHhh
Q 006697 456 PPIGVFFAAVAPHL-------------------QPRYYSISSSPRFA--PDRVHVTCALVYGPTPTGRIHKGVCSTWMKN 514 (635)
Q Consensus 456 ~p~~~ll~~~~p~l-------------------~pR~YSIsSsp~~~--~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~ 514 (635)
..+||++.+.+|.. ..|+|||+|+|..+ .+.++|+|+. .|.+|+||.+
T Consensus 26 ~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~vk~-----------~G~~T~~L~~ 94 (220)
T cd06197 26 WTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITVRK-----------KGPVTGFLFQ 94 (220)
T ss_pred cCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEEEe-----------CCCCCHHHHH
Confidence 45788877765531 34999999999654 2789999876 5899999998
Q ss_pred cCC-----CCCCCCccEEEEEeeCCCCcCCC---CCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecC
Q 006697 515 AIP-----LEGNGDCSWAPIFIRPSNFKLPA---NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRN 586 (635)
Q Consensus 515 l~~-----g~~~~~~~~v~i~~~~g~F~lp~---~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~ 586 (635)
... | +.+.|.+|.|.|.++. +..+++||||+|||||||++++++.... +....+++|+||+|+
T Consensus 95 ~~~~~~~~G------~~v~v~gP~G~f~~~~~~~~~~~~illIagG~GItP~~sil~~l~~~---~~~~~~v~l~~~~r~ 165 (220)
T cd06197 95 VARRLREQG------LEVPVLGVGGEFTLSLPGEGAERKMVWIAGGVGITPFLAMLRAILSS---RNTTWDITLLWSLRE 165 (220)
T ss_pred hhhcccCCC------ceEEEEecCCcccCCcccccCCceEEEEecccchhhHHHHHHHHHhc---ccCCCcEEEEEEecc
Confidence 543 6 8999999999999875 3457999999999999999999988752 213578999999999
Q ss_pred CCcccccHHHHHHHHH
Q 006697 587 RRMDFIYEDELNNFEE 602 (635)
Q Consensus 587 ~~~d~ly~del~~~~~ 602 (635)
++ |.+|.+||.++..
T Consensus 166 ~~-~~~~~~el~~~~~ 180 (220)
T cd06197 166 DD-LPLVMDTLVRFPG 180 (220)
T ss_pred hh-hHHHHHHHHhccC
Confidence 99 9999999988764
No 80
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.71 E-value=3.2e-17 Score=166.25 Aligned_cols=137 Identities=19% Similarity=0.269 Sum_probs=111.1
Q ss_pred CCChhhHHHHhcCCCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEeeCC
Q 006697 455 TPPIGVFFAAVAPHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPS 534 (635)
Q Consensus 455 ~~p~~~ll~~~~p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~g 534 (635)
...+|||+.+.+|....|+|||+|+| +.++|+|+. .|.+|+||.++++| +.+.|.+|.|
T Consensus 23 ~~~pGQ~v~l~~~~~~~~~~Si~s~~----~~l~~~v~~-----------~G~~s~~L~~l~~G------d~v~i~gP~G 81 (233)
T cd06220 23 DFKPGQFVMVWVPGVDEIPMSLSYID----GPNSITVKK-----------VGEATSALHDLKEG------DKLGIRGPYG 81 (233)
T ss_pred CCCCCceEEEEeCCCCcceeEEecCC----CeEEEEEEe-----------cChHHHHHHhcCCC------CEEEEECcCC
Confidence 45789999987666667999999997 679999976 48899999999999 8999999999
Q ss_pred C-CcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEE
Q 006697 535 N-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (635)
Q Consensus 535 ~-F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~ 613 (635)
+ |.++ .+|+||||+|||||||++++++... . .+++||||+|+++ |.+|.+||++. . ++.+..
T Consensus 82 ~~f~~~---~~~~vliAgGtGitP~~sil~~~~~------~-~~i~l~~~~r~~~-d~~~~~eL~~~----~--~~~~~~ 144 (233)
T cd06220 82 NGFELV---GGKVLLIGGGIGIAPLAPLAERLKK------A-ADVTVLLGARTKE-ELLFLDRLRKS----D--ELIVTT 144 (233)
T ss_pred CCccCC---CCeEEEEecCcChHHHHHHHHHHHh------c-CCEEEEEecCChH-HChhHHHHhhC----C--cEEEEE
Confidence 6 8775 5799999999999999999998764 2 6899999999999 99999999972 1 233322
Q ss_pred ecCC--CCcccchhHHhcc
Q 006697 614 SREG--SQKEYVQHKMMDK 630 (635)
Q Consensus 614 SR~~--~~k~yVQd~l~~~ 630 (635)
.+. ...+++++.+.+.
T Consensus 145 -~~~~~~~~g~~~~~l~~~ 162 (233)
T cd06220 145 -DDGSYGFKGFVTDLLKEL 162 (233)
T ss_pred -eCCCCcccceehHHHhhh
Confidence 222 2457888877644
No 81
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.71 E-value=2.7e-17 Score=168.61 Aligned_cols=141 Identities=20% Similarity=0.263 Sum_probs=113.9
Q ss_pred CCChhhHHHHhcCCC---CccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEe
Q 006697 455 TPPIGVFFAAVAPHL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 531 (635)
Q Consensus 455 ~~p~~~ll~~~~p~l---~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~ 531 (635)
...+|||+.+..|.. .+|+|||+|+| .+.++|+|+. .|.+|+||.++++| ++|.|.+
T Consensus 31 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~---~~~l~l~Vk~-----------~G~~t~~l~~l~~G------~~v~i~g 90 (250)
T PRK00054 31 DMKPGQFVMVWVPGVEPLLERPISISDID---KNEITILYRK-----------VGEGTKKLSKLKEG------DELDIRG 90 (250)
T ss_pred CCCCCcEEEEEeCCCCCcCceeeEEeeeC---CCEEEEEEEE-----------cChHHHHHhcCCCC------CEEEEEc
Confidence 347899988875543 58999999998 4789999986 48899999999999 8999999
Q ss_pred eCCC-CcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEE
Q 006697 532 RPSN-FKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELI 610 (635)
Q Consensus 532 ~~g~-F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~ 610 (635)
|.|+ |.++. ..+|+||||+||||||+++++++... . ..++.|+|++|+.+ |++|.+||+++.+ ++
T Consensus 91 P~G~~f~l~~-~~~~~vlIagG~GiaP~~s~l~~~~~---~---~~~v~l~~~~r~~~-d~~~~~el~~~~~------~~ 156 (250)
T PRK00054 91 PLGNGFDLEE-IGGKVLLVGGGIGVAPLYELAKELKK---K---GVEVTTVLGARTKD-EVIFEEEFAKVGD------VY 156 (250)
T ss_pred ccCCCCCCCC-CCCeEEEEeccccHHHHHHHHHHHHH---c---CCcEEEEEEcCCHH-HhhhHHHHHhcCC------EE
Confidence 9995 88864 55799999999999999999999864 2 25799999999998 9999999998431 22
Q ss_pred EEEecCCC--CcccchhHHhcc
Q 006697 611 LAFSREGS--QKEYVQHKMMDK 630 (635)
Q Consensus 611 ~a~SR~~~--~k~yVQd~l~~~ 630 (635)
+. +++++ .++||++.+.+.
T Consensus 157 ~~-~~~~~~~~~g~v~~~l~~~ 177 (250)
T PRK00054 157 VT-TDDGSYGFKGFVTDVLDEL 177 (250)
T ss_pred EE-ecCCCCCcccchhHhHhhh
Confidence 22 23332 567999988754
No 82
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.70 E-value=6.1e-17 Score=165.15 Aligned_cols=120 Identities=13% Similarity=0.096 Sum_probs=101.9
Q ss_pred CChhhHHHHhcC---CCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEee
Q 006697 456 PPIGVFFAAVAP---HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIR 532 (635)
Q Consensus 456 ~p~~~ll~~~~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~ 532 (635)
..+|||+.+.++ ....|+|||+|.|.. .+.++|+|+. .|..|+||.++++| +.+.|.+|
T Consensus 25 ~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~-~~~l~l~i~~-----------~G~~t~~l~~~~~G------~~l~i~gP 86 (243)
T cd06192 25 FRPGQFVFLRNFESPGLERIPLSLAGVDPE-EGTISLLVEI-----------RGPKTKLIAELKPG------EKLDVMGP 86 (243)
T ss_pred CCCCCeEEEecCCCCCceeeeeEeeecCCC-CCEEEEEEEE-----------cCchHHHHHhCCCC------CEEEEEcc
Confidence 467898888753 456799999999854 5789999976 58899999999999 89999999
Q ss_pred CCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHH
Q 006697 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNF 600 (635)
Q Consensus 533 ~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~ 600 (635)
.|+|.+..+..+++||||+|||||||++++++... ...+++||||+|+++ |.+|.+||+++
T Consensus 87 ~G~~~~~~~~~~~~lliagGtGiap~~~~l~~~~~------~~~~v~l~~~~r~~~-d~~~~~el~~~ 147 (243)
T cd06192 87 LGNGFEGPKKGGTVLLVAGGIGLAPLLPIAKKLAA------NGNKVTVLAGAKKAK-EEFLDEYFELP 147 (243)
T ss_pred CCCCCccCCCCCEEEEEeCcccHHHHHHHHHHHHH------CCCeEEEEEecCcHH-HHHHHHHHHhh
Confidence 99776554446799999999999999999999764 236899999999998 99999999887
No 83
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.68 E-value=8.8e-17 Score=167.66 Aligned_cols=143 Identities=17% Similarity=0.196 Sum_probs=112.5
Q ss_pred CChhhHHHHhcCCC-CccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEE-EEEeeC
Q 006697 456 PPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWA-PIFIRP 533 (635)
Q Consensus 456 ~p~~~ll~~~~p~l-~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v-~i~~~~ 533 (635)
..+|||+.+-++.. .+|+|||+|.+.. ++.++|+|+. .|..|++|.++++| +.+ .|.+|.
T Consensus 28 ~~pGQfv~l~~~~~~~~rpySias~~~~-~~~i~l~vk~-----------~G~~T~~L~~l~~G------d~v~~i~GP~ 89 (281)
T PRK06222 28 AKPGQFVIVRIDEKGERIPLTIADYDRE-KGTITIVFQA-----------VGKSTRKLAELKEG------DSILDVVGPL 89 (281)
T ss_pred CCCCeEEEEEeCCCCCceeeEeeEEcCC-CCEEEEEEEe-----------CCcHHHHHhcCCCC------CEEeeEEcCC
Confidence 46899988865533 4689999998754 5789999987 58899999999999 899 799999
Q ss_pred CCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEE
Q 006697 534 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (635)
Q Consensus 534 g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~ 613 (635)
|+|.... ..+|+||||+|+||||+++++++... + ..+++||||+|+++ |.+|.+||++++.. +++ .
T Consensus 90 G~~~~~~-~~~~~llIaGGiGiaPl~~l~~~l~~---~---~~~v~l~~g~r~~~-d~~~~~el~~~~~~-----~~v-~ 155 (281)
T PRK06222 90 GKPSEIE-KFGTVVCVGGGVGIAPVYPIAKALKE---A---GNKVITIIGARNKD-LLILEDEMKAVSDE-----LYV-T 155 (281)
T ss_pred CCCcccC-CCCeEEEEeCcCcHHHHHHHHHHHHH---C---CCeEEEEEecCCHH-HhhcHHHHHhhCCe-----EEE-E
Confidence 9765443 35799999999999999999998654 2 25799999999999 99999999988652 222 2
Q ss_pred ecCCC--CcccchhHHhcc
Q 006697 614 SREGS--QKEYVQHKMMDK 630 (635)
Q Consensus 614 SR~~~--~k~yVQd~l~~~ 630 (635)
+.+++ .+++|++.+.+.
T Consensus 156 ~~d~~~g~~G~v~~~l~~~ 174 (281)
T PRK06222 156 TDDGSYGRKGFVTDVLKEL 174 (281)
T ss_pred cCCCCcCcccchHHHHHHH
Confidence 34433 567888877543
No 84
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.68 E-value=1.3e-16 Score=163.46 Aligned_cols=144 Identities=17% Similarity=0.201 Sum_probs=112.6
Q ss_pred CCChhhHHHHhcC-CCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEE-EEEee
Q 006697 455 TPPIGVFFAAVAP-HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWA-PIFIR 532 (635)
Q Consensus 455 ~~p~~~ll~~~~p-~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v-~i~~~ 532 (635)
...+|||+.+.++ ....|+|||+|.|.. .+.++|+|+. .|..|.+|.++++| +.+ .|.+|
T Consensus 26 ~~~pGQf~~l~~~~~~~~~pySi~s~~~~-~~~~~~~vk~-----------~G~~t~~l~~l~~G------~~v~~i~gP 87 (248)
T cd06219 26 KAKPGQFVIVRADEKGERIPLTIADWDPE-KGTITIVVQV-----------VGKSTRELATLEEG------DKIHDVVGP 87 (248)
T ss_pred cCCCCcEEEEEcCCCCCccceEeEEEcCC-CCEEEEEEEe-----------CCchHHHHHhcCCC------CEeeeeecC
Confidence 3468998887633 235699999998754 5789999976 48889999999999 899 69999
Q ss_pred CCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEE
Q 006697 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (635)
Q Consensus 533 ~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a 612 (635)
.|.|.+.. ..+|+||||+||||||+++++++... . ..+++||||+|+.+ |++|.+||+++.++ ++++
T Consensus 88 ~G~~~~~~-~~~~~lliagG~GiaP~~~~l~~~~~---~---~~~v~l~~~~r~~~-~~~~~~el~~l~~~-----~~~~ 154 (248)
T cd06219 88 LGKPSEIE-NYGTVVFVGGGVGIAPIYPIAKALKE---A---GNRVITIIGARTKD-LVILEDEFRAVSDE-----LIIT 154 (248)
T ss_pred CCCCeecC-CCCeEEEEeCcccHHHHHHHHHHHHH---c---CCeEEEEEEcCCHH-HhhhHHHHHhhcCe-----EEEE
Confidence 99876543 35799999999999999999999664 2 25899999999998 99999999999643 2222
Q ss_pred EecCCC--CcccchhHHhcc
Q 006697 613 FSREGS--QKEYVQHKMMDK 630 (635)
Q Consensus 613 ~SR~~~--~k~yVQd~l~~~ 630 (635)
+++.+ ..+||++.+.+.
T Consensus 155 -~~~~~~~~~g~v~~~l~~~ 173 (248)
T cd06219 155 -TDDGSYGEKGFVTDPLKEL 173 (248)
T ss_pred -eCCCCCCccccchHHHHHH
Confidence 44432 457888877543
No 85
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.68 E-value=8.5e-17 Score=170.38 Aligned_cols=164 Identities=19% Similarity=0.180 Sum_probs=140.5
Q ss_pred chHHHHHHHhhcccccccchhHHHHHHHHHHHHHhhheeeeeccCCCCcCCCCCCCCCCCCCCCccchHHHHhc-----C
Q 006697 8 DLVKFVESALGVSLGDSVTDTVILIATTSFAVVIGLLVLVWKKSSSDRSKEVKPVVPLKPLSAKDEDDEADIAA-----G 82 (635)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 82 (635)
...++|..+++++. .+++.|||++ ||. +||++.. +++++|.+ .
T Consensus 198 p~~~~v~~~l~~~~----~l~i~~IaP~-HG~-------i~~~~~~--------------------~i~~~Y~~W~~~~~ 245 (388)
T COG0426 198 PNARLVLWALKKIK----LLKIEMIAPS-HGP-------IWRGNPK--------------------EIVEAYRDWAEGQP 245 (388)
T ss_pred ccHHHHHHHHhhhc----ccCccEEEcC-CCc-------eeeCCHH--------------------HHHHHHHHHHccCC
Confidence 45678999998888 5899999999 999 9998764 44555544 2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~ 162 (635)
.++|.|+|.|++|+|+.+|+.|+++|.+. |+.+.++++.+.+.++ +..++.+++.++++|||+ ++++++.+..++
T Consensus 246 ~~~V~l~Y~smyg~T~~ma~aiaegl~~~--gv~v~~~~~~~~~~~e--I~~~i~~a~~~vvGsPT~-~~~~~p~i~~~l 320 (388)
T COG0426 246 KGKVDLIYDSMYGNTEKMAQAIAEGLMKE--GVDVEVINLEDADPSE--IVEEILDAKGLVVGSPTI-NGGAHPPIQTAL 320 (388)
T ss_pred cceEEEEEecccCCHHHHHHHHHHHhhhc--CCceEEEEcccCCHHH--HHHHHhhcceEEEecCcc-cCCCCchHHHHH
Confidence 34799999999999999999999999999 9999999999888777 888899999999999999 555556677799
Q ss_pred HHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeeccee
Q 006697 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 217 (635)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~ 217 (635)
-.+.... .+++.++||| +|+|-+.+.+.+.++|+.+|.+...+-.+
T Consensus 321 ~~v~~~~-----~~~k~~~vfg----S~GW~g~av~~i~~~l~~~g~~~~~~~i~ 366 (388)
T COG0426 321 GYVLALA-----PKNKLAGVFG----SYGWSGEAVDLIEEKLKDLGFEFGFDGIE 366 (388)
T ss_pred HHHHhcc-----CcCceEEEEe----ccCCCCcchHHHHHHHHhcCcEEeccceE
Confidence 9988876 6788999999 89999999999999999999998776433
No 86
>PLN02252 nitrate reductase [NADPH]
Probab=99.67 E-value=1.8e-16 Score=186.72 Aligned_cols=162 Identities=15% Similarity=0.172 Sum_probs=124.0
Q ss_pred CChhhHHHHhcC---CCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEee
Q 006697 456 PPIGVFFAAVAP---HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIR 532 (635)
Q Consensus 456 ~p~~~ll~~~~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~ 532 (635)
.++||++.+.++ ....|+|||+|.+.. .+.++|+|+++...........|.+|+||.++++| +.|.|.+|
T Consensus 665 l~pGQhV~l~~~~~g~~~~R~YSpaS~~~~-~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~vG------d~V~V~GP 737 (888)
T PLN02252 665 LPVGKHVFLCATINGKLCMRAYTPTSSDDE-VGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIG------DTIDVKGP 737 (888)
T ss_pred CCCCCEEEEEEecCCeEEEeeeEecccCCC-CCEEEEEEEEEeccccCccCCCCchhhHHhcCCCC------CEEEEecC
Confidence 468888777532 234799999999864 57899999986211000111259999999999999 89999999
Q ss_pred CCCCc--------CCCC--CCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHH
Q 006697 533 PSNFK--------LPAN--PSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEE 602 (635)
Q Consensus 533 ~g~F~--------lp~~--~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~ 602 (635)
.|.|. ++.. ..++++|||+|||||||+++|++.+.. .....+++||||+|+.+ |++|++||+++++
T Consensus 738 ~G~f~y~g~G~f~l~~~~~~~~~vvmIAGGsGITPi~silr~ll~~---~~d~t~i~Liyg~Rt~~-Dil~~eEL~~la~ 813 (888)
T PLN02252 738 LGHIEYAGRGSFLVNGKPKFAKKLAMLAGGTGITPMYQVIQAILRD---PEDKTEMSLVYANRTED-DILLREELDRWAA 813 (888)
T ss_pred ccceeecccceeeeccccccCceEEEEecceehhHHHHHHHHHHhc---cCCCCcEEEEEEECCHH-HhhHHHHHHHHHH
Confidence 99764 3322 247999999999999999999998752 12357899999999998 9999999999998
Q ss_pred cC-CccEEEEEEecCC-C----CcccchhHHh
Q 006697 603 EG-VISELILAFSREG-S----QKEYVQHKMM 628 (635)
Q Consensus 603 ~g-~~~~l~~a~SR~~-~----~k~yVQd~l~ 628 (635)
+. ..++++.++|++. . .+++|++.+.
T Consensus 814 ~~p~~~~v~~vls~~~~~~w~g~~GrV~~~ll 845 (888)
T PLN02252 814 EHPDRLKVWYVVSQVKREGWKYSVGRVTEAML 845 (888)
T ss_pred hCCCCEEEEEEecCCCcCCCCCcCCcCCHHHH
Confidence 76 5778899999853 1 4578877543
No 87
>PRK05569 flavodoxin; Provisional
Probab=99.67 E-value=1e-15 Score=142.99 Aligned_cols=115 Identities=18% Similarity=0.231 Sum_probs=99.4
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCC-hhHHHH
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPT-DNAARF 161 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p-~na~~F 161 (635)
+++++|+|+|+||||+.+|+.|++++.+. |..++++++.+.+..+ +.+++.+||++|||+.|.+| +.+..|
T Consensus 1 m~ki~iiY~S~tGnT~~iA~~i~~~~~~~--g~~v~~~~~~~~~~~~------~~~~d~iilgsPty~~~~~~~~~~~~~ 72 (141)
T PRK05569 1 MKKVSIIYWSCGGNVEVLANTIADGAKEA--GAEVTIKHVADAKVED------VLEADAVAFGSPSMDNNNIEQEEMAPF 72 (141)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHhC--CCeEEEEECCcCCHHH------HhhCCEEEEECCCcCCCcCChHHHHHH
Confidence 35899999999999999999999999877 7889999999887666 88999999999999888764 789999
Q ss_pred HHHHhcCCCCCCCCCCceEEEEEecCcchhHH-HHHHHHHHHHHHHCCCEEeec
Q 006697 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHF-NKIGIVLDEELCKQGGARLVP 214 (635)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f-~~~~k~ld~~L~~lGa~~v~~ 214 (635)
++.+.... ++++++++|| +|+|. +.+.+.+.+.|++.|++.+.+
T Consensus 73 ~~~l~~~~-----~~~K~v~~f~----t~g~~~~~~~~~~~~~l~~~g~~~~~~ 117 (141)
T PRK05569 73 LDQFKLTP-----NENKKCILFG----SYGWDNGEFMKLWKDRMKDYGFNVIGD 117 (141)
T ss_pred HHHhhccC-----cCCCEEEEEe----CCCCCCCcHHHHHHHHHHHCCCeEeee
Confidence 99987643 6899999999 56554 567788999999999988765
No 88
>PRK05802 hypothetical protein; Provisional
Probab=99.67 E-value=9e-17 Score=170.23 Aligned_cols=144 Identities=13% Similarity=0.104 Sum_probs=110.9
Q ss_pred ChhhHHHHhcC---CCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEeeC
Q 006697 457 PIGVFFAAVAP---HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRP 533 (635)
Q Consensus 457 p~~~ll~~~~p---~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~ 533 (635)
.+|||+.+..+ +...|+|||+|+|.. .+.++|+|++ .|..|++|.++++| +++.|.+|.
T Consensus 96 ~PGQFv~l~~~~~~~~~~rP~SI~~~~~~-~g~l~l~ik~-----------~G~~T~~L~~l~~G------d~l~v~GP~ 157 (320)
T PRK05802 96 YPGSFVFLRNKNSSSFFDVPISIMEADTE-ENIIKVAIEI-----------RGVKTKKIAKLNKG------DEILLRGPY 157 (320)
T ss_pred CCCceEEEEEcCCCCEeEEeeEecccCCC-CCEEEEEEEe-----------cChhHHHHhcCCCC------CEEEEeCCC
Confidence 57888877643 234599999999864 5789999987 58999999999999 899999998
Q ss_pred C--CCcCC---CCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccE
Q 006697 534 S--NFKLP---ANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISE 608 (635)
Q Consensus 534 g--~F~lp---~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~ 608 (635)
| .|.++ ....+++|+||+|+||||+++++++... ++ .+++||||+|+++ |.+|.+||+++..+...++
T Consensus 158 GnG~F~l~~~~~~~~~~~llIaGGiGIaPl~~l~~~l~~---~~---~~v~li~g~r~~~-~~~~~~el~~~~~~~~~~~ 230 (320)
T PRK05802 158 WNGILGLKNIKSTKNGKSLVIARGIGQAPGVPVIKKLYS---NG---NKIIVIIDKGPFK-NNFIKEYLELYNIEIIELN 230 (320)
T ss_pred CcCcCCcccccccCCCeEEEEEeEEeHHHHHHHHHHHHH---cC---CcEEEEEeCCCHH-HHHHHHHHHHhhCceEEEE
Confidence 6 37663 2345699999999999999999998865 22 4899999999998 9999999999865422211
Q ss_pred EEEEEecCCC----CcccchhHHhc
Q 006697 609 LILAFSREGS----QKEYVQHKMMD 629 (635)
Q Consensus 609 l~~a~SR~~~----~k~yVQd~l~~ 629 (635)
+ .. ++. .+++|++.+.+
T Consensus 231 ~---~d-dG~~~~~~~g~v~~~l~~ 251 (320)
T PRK05802 231 L---LD-DGELSEEGKDILKEIIKK 251 (320)
T ss_pred e---cc-cCCCCccccchHHHHhcC
Confidence 1 12 221 35688888764
No 89
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.66 E-value=7.2e-16 Score=158.34 Aligned_cols=153 Identities=15% Similarity=0.183 Sum_probs=128.8
Q ss_pred CChhhHHHHhcCC---CCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEee
Q 006697 456 PPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIR 532 (635)
Q Consensus 456 ~p~~~ll~~~~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~ 532 (635)
.|.||.+.+.+|. ..-|+||-.|++.. .+.++|.|+.-. .|.+|.||.++++| |+|.+++|
T Consensus 82 lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~-~g~~~l~VK~Y~---------~G~mS~~l~~LkiG------d~ve~rGP 145 (286)
T KOG0534|consen 82 LPIGQHVVLKAPIGGKLVVRPYTPVSLDDD-KGYFDLVVKVYP---------KGKMSQHLDSLKIG------DTVEFRGP 145 (286)
T ss_pred cccceEEEEEecCCCcEEEEecCCccCccc-cceEEEEEEecc---------CCcccHHHhcCCCC------CEEEEecC
Confidence 4666666665443 34799999988865 689999999854 59999999999999 99999999
Q ss_pred CCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCC-ccEEEE
Q 006697 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGV-ISELIL 611 (635)
Q Consensus 533 ~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~-~~~l~~ 611 (635)
.|+|.++....+.+.|||+||||||+..++|+.+.. .....+++|+|.+++++ |.++++||+.++++.. .++++.
T Consensus 146 ~G~~~~~~~~~~~l~miAgGtGItPmlqii~~il~~---~~d~tki~lly~N~te~-DILlr~eL~~la~~~p~rf~~~y 221 (286)
T KOG0534|consen 146 IGEFKYDPQKAKHLGMIAGGTGITPMLQLIRAILKD---PEDTTKISLLYANKTED-DILLREELEELASKYPERFKVWY 221 (286)
T ss_pred ccceEecCCCcceEEEEecccchhhHHHHHHHHhcC---CCCCcEEEEEEecCCcc-ccchHHHHHHHHhhCcceEEEEE
Confidence 999988877778999999999999999999999863 22467899999999999 9999999999999977 888999
Q ss_pred EEecCCC----CcccchhHHh
Q 006697 612 AFSREGS----QKEYVQHKMM 628 (635)
Q Consensus 612 a~SR~~~----~k~yVQd~l~ 628 (635)
+.++++. .++||..-+.
T Consensus 222 ~v~~~~~~w~~~~g~It~~~i 242 (286)
T KOG0534|consen 222 VVDQPPEIWDGSVGFITKDLI 242 (286)
T ss_pred EEcCCcccccCccCccCHHHH
Confidence 9988763 5688865443
No 90
>PRK05568 flavodoxin; Provisional
Probab=99.66 E-value=1.2e-15 Score=142.79 Aligned_cols=117 Identities=21% Similarity=0.238 Sum_probs=99.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCC-hhHHHH
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPT-DNAARF 161 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p-~na~~F 161 (635)
+++++|+|+|+||||+++|+.|++.+.+. |+.++++++.+.+..+ +..++.+||++|||+.|.+| ..+..|
T Consensus 1 m~~~~IvY~S~~GnT~~~a~~i~~~~~~~--g~~v~~~~~~~~~~~~------~~~~d~iilgsp~y~~~~~~~~~~~~f 72 (142)
T PRK05568 1 MKKINIIYWSGTGNTEAMANLIAEGAKEN--GAEVKLLNVSEASVDD------VKGADVVALGSPAMGDEVLEEGEMEPF 72 (142)
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHHC--CCeEEEEECCCCCHHH------HHhCCEEEEECCccCcccccchhHHHH
Confidence 46799999999999999999999999877 8899999999887665 88999999999999888864 789899
Q ss_pred HHHHhcCCCCCCCCCCceEEEEEecCcchhHH-HHHHHHHHHHHHHCCCEEeeccee
Q 006697 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHF-NKIGIVLDEELCKQGGARLVPLGL 217 (635)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f-~~~~k~ld~~L~~lGa~~v~~~g~ 217 (635)
++.+... ++++++++||. |+|. +.+.+.+.+.|+++|++.+.+...
T Consensus 73 ~~~~~~~------~~~k~~~~f~t----~G~~~~~~~~~~~~~l~~~g~~~~~~~~~ 119 (142)
T PRK05568 73 VESISSL------VKGKKLVLFGS----YGWGDGEWMRDWVERMEGYGANLVNEGLI 119 (142)
T ss_pred HHHhhhh------hCCCEEEEEEc----cCCCCChHHHHHHHHHHHCCCEEeCCcEE
Confidence 9887542 68999999994 5553 456788999999999998876433
No 91
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.65 E-value=3.8e-16 Score=155.75 Aligned_cols=137 Identities=18% Similarity=0.312 Sum_probs=118.3
Q ss_pred CccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEeeCCCCcCCCCCCCcEEEE
Q 006697 470 QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMV 549 (635)
Q Consensus 470 ~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~g~F~lp~~~~~piImI 549 (635)
.-|.||++|-|.+ .+.|.|-|++..-|..+...-.|.||+|+.+|+|| |+|.|++|.|.|... +.++|+|+|
T Consensus 210 ~~rAYSmAsYPeE-~giI~~NvRIAtPPp~~~~~PpG~mSSyi~sLKpG------DKvtisGPfGEfFaK-dtdaemvFi 281 (410)
T COG2871 210 IIRAYSMASYPEE-KGIIKLNVRIATPPPRNPDAPPGQMSSYIWSLKPG------DKVTISGPFGEFFAK-DTDAEMVFI 281 (410)
T ss_pred HHHHhhhhcChhh-cCeEEEEEEeccCCCCCCCCCccceeeeEEeecCC------CeEEEeccchhhhhc-cCCCceEEE
Confidence 3589999999977 67899999886533333456689999999999999 999999999977654 568899999
Q ss_pred ecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEEecCCC
Q 006697 550 GPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGS 618 (635)
Q Consensus 550 g~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~SR~~~ 618 (635)
++|.|.||+||-+-+.+.... ..+++.+.||+|+.. +.+|++|+++++++.++|+.|+|+|.+.+
T Consensus 282 gGGAGmapmRSHIfDqL~rlh---SkRkis~WYGARS~r-E~fY~Ed~d~L~ae~pNF~wH~aLSdplp 346 (410)
T COG2871 282 GGGAGMAPMRSHIFDQLKRLH---SKRKISFWYGARSLR-EMFYQEDFDQLQAENPNFHWHLALSDPLP 346 (410)
T ss_pred ecCcCcCchHHHHHHHHHhhc---ccceeeeeeccchHH-HhHHHHHHHHHHhhCCCcEEEEEecCCCC
Confidence 999999999999988776433 457999999999998 89999999999999999999999998765
No 92
>TIGR00333 nrdI ribonucleoside-diphosphate reductase 2, operon protein nrdI. Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterized classes of RNRs differ by their metal cofactor and their stable organic radical. The exact function of nrdI within the ribonucleotide reductases has not yet been fully characterised.
Probab=99.65 E-value=5.4e-16 Score=141.11 Aligned_cols=92 Identities=20% Similarity=0.316 Sum_probs=74.0
Q ss_pred EEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhc
Q 006697 88 VFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTE 167 (635)
Q Consensus 88 I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~~~L~~ 167 (635)
|+|+|+|||||+|++++ ++++..+.+++.+..+ + .++.+++ ++|||+|+.|+.+.+|++.+.+
T Consensus 1 IvY~S~TGNte~fv~~l---------g~~~~~i~~~~~d~~~------~-~~~~vli-TyT~G~G~vP~~~~~Fle~~~n 63 (125)
T TIGR00333 1 IYFSSKTGNVQRFVEKL---------GFQHIRIPVDETDDIH------V-DQEFVLI-TYTGGFGAVPKQTISFLNKKHN 63 (125)
T ss_pred CEEEcccccHHHHHHHc---------CCCcEEeecCCcchhh------c-CCCEEEE-ecCCCCCcCCHHHHHHHHhhhh
Confidence 78999999999995433 3334445666544433 4 5666666 9999999999999999888754
Q ss_pred CCCCCCCCCCceEEEEEecCcch-hHHHHHHHHHHHHHHH
Q 006697 168 GNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCK 206 (635)
Q Consensus 168 ~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~ 206 (635)
+.++|||+||+.| ++||.+++.+.+++..
T Consensus 64 ----------~~~gV~gSGn~n~g~~fc~A~d~ia~~~~~ 93 (125)
T TIGR00333 64 ----------LLRGVAASGNKVWGDNFALAGDVISRKLNV 93 (125)
T ss_pred ----------cEEEEEEcCCCchHHHHHHHHHHHHHHhCC
Confidence 6899999999999 9999999999999976
No 93
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.60 E-value=2.1e-15 Score=184.23 Aligned_cols=153 Identities=14% Similarity=0.233 Sum_probs=121.2
Q ss_pred CChhhHHHHhcC--C-CCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEee
Q 006697 456 PPIGVFFAAVAP--H-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIR 532 (635)
Q Consensus 456 ~p~~~ll~~~~p--~-l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~ 532 (635)
..+|||+.+..+ . ...|+|||+|.|.. .+.++|+|+. + .|.+|+||+++++| +.|.|.+|
T Consensus 948 ~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~-~~~i~l~Vr~-~---------~G~~S~~L~~l~~G------d~v~v~gp 1010 (1167)
T PTZ00306 948 LTLGQFIAIRGDWDGQQLIGYYSPITLPDD-LGVISILARG-D---------KGTLKEWISALRPG------DSVEMKAC 1010 (1167)
T ss_pred CCCCeEEEEEeeeCCeEEEEEeccCCCCCC-CCeEEEEEEc-C---------CChhHHHHhhCCCC------CEEEEeCC
Confidence 478999998743 1 23599999999954 5789998863 1 58999999999999 89999986
Q ss_pred CC----------CCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHH
Q 006697 533 PS----------NFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEE 602 (635)
Q Consensus 533 ~g----------~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~ 602 (635)
.| .|.++....+|+||||+|||||||++|+++.+... ......+++||||+|+.+ |.+|++||++|++
T Consensus 1011 ~G~~~~~~p~~~~f~~~~~~~~~ivlIAGGtGItP~~sml~~~l~~~-~~~~~~~i~Llyg~r~~~-dl~~~~eL~~l~~ 1088 (1167)
T PTZ00306 1011 GGLRIERRPADKQFVFRGHVIRKLALIAGGTGVAPMLQIIRAALKKP-YVDSIESIRLIYAAEDVS-ELTYRELLESYRK 1088 (1167)
T ss_pred cCccccccCccceeeeccCCCceEEEEECCccHhHHHHHHHHHHhCc-ccCCCceEEEEEEeCCHH-HhhHHHHHHHHHH
Confidence 44 46666556689999999999999999999877510 001246899999999999 9999999999998
Q ss_pred cCC-ccEEEEEEecCCC----CcccchhHH
Q 006697 603 EGV-ISELILAFSREGS----QKEYVQHKM 627 (635)
Q Consensus 603 ~g~-~~~l~~a~SR~~~----~k~yVQd~l 627 (635)
+.. .++++.++||+++ ..+||++.+
T Consensus 1089 ~~~~~f~~~~~ls~~~~~w~~~~G~i~~~~ 1118 (1167)
T PTZ00306 1089 ENPGKFKCHFVLNNPPEGWTDGVGFVDRAL 1118 (1167)
T ss_pred HCCCCEEEEEEECCCCcccCCCCCCCCHHH
Confidence 765 5889999998644 358887653
No 94
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.60 E-value=3.1e-15 Score=154.67 Aligned_cols=128 Identities=17% Similarity=0.255 Sum_probs=107.9
Q ss_pred CCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhh-cCCCCCCCCccEEEEEeeCCCCcCCCCCCCcE
Q 006697 468 HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFIRPSNFKLPANPSVPI 546 (635)
Q Consensus 468 ~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~~~g~F~lp~~~~~pi 546 (635)
+..|.+||||++... ++++|+|+. .|..|.-|++ +++| +++.|.+|+|.|....... .-
T Consensus 259 ~~~~HPFTIa~s~~~--sel~FsIK~-----------LGD~Tk~l~dnLk~G------~k~~vdGPYG~F~~~~g~~-~Q 318 (438)
T COG4097 259 RMRPHPFTIACSHEG--SELRFSIKA-----------LGDFTKTLKDNLKVG------TKLEVDGPYGKFDFERGLN-TQ 318 (438)
T ss_pred cCCCCCeeeeeCCCC--ceEEEEehh-----------hhhhhHHHHHhccCC------ceEEEecCcceeecccCCc-cc
Confidence 456899999999764 589999987 6999999998 9999 9999999999998875433 28
Q ss_pred EEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEEecCCCCcccc
Q 006697 547 IMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAFSREGSQKEYV 623 (635)
Q Consensus 547 ImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~SR~~~~k~yV 623 (635)
|+||+|+|||||+||++..... ....++.|||.||+.+ +.+|.+||++++++.+++.+++. |...++|+
T Consensus 319 VWIAGGIGITPFis~l~~l~~~----~s~~~V~L~Y~~~n~e-~~~y~~eLr~~~qkl~~~~lHii---DSs~~g~l 387 (438)
T COG4097 319 VWIAGGIGITPFISMLFTLAER----KSDPPVHLFYCSRNWE-EALYAEELRALAQKLPNVVLHII---DSSKDGYL 387 (438)
T ss_pred EEEecCcCcchHHHHHHhhccc----ccCCceEEEEEecCCc-hhHHHHHHHHHHhcCCCeEEEEe---cCCCCCcc
Confidence 9999999999999999998752 1457999999999999 99999999999999888888873 33345565
No 95
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.58 E-value=6.9e-15 Score=146.37 Aligned_cols=128 Identities=18% Similarity=0.171 Sum_probs=101.6
Q ss_pred CCChhhHHHHhcCCC----CccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcC------CCCCCCCc
Q 006697 455 TPPIGVFFAAVAPHL----QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAI------PLEGNGDC 524 (635)
Q Consensus 455 ~~p~~~ll~~~~p~l----~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~------~g~~~~~~ 524 (635)
...+||++.+.+|.. +.|+|||+|+|....+.++|+|+.. .|.+|.++..+. .+
T Consensus 24 ~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~----------~G~~t~~~~~~~~~~~~~~~------ 87 (210)
T cd06186 24 KWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAK----------KGFTTRLLRKALKSPGGGVS------ 87 (210)
T ss_pred ccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEec----------CChHHHHHHHHHhCcCCCce------
Confidence 456888888876654 6899999999864347899999873 388888887776 45
Q ss_pred cEEEEEeeCCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcc-cccHHHHHH
Q 006697 525 SWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMD-FIYEDELNN 599 (635)
Q Consensus 525 ~~v~i~~~~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d-~ly~del~~ 599 (635)
+.+.|.+|.|.|..+.....++||||+||||||+++++++......+.....++.|+|++|+.+ | ..|.+||.+
T Consensus 88 ~~v~v~GP~G~~~~~~~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r~~~-~~~~~~~~l~~ 162 (210)
T cd06186 88 LKVLVEGPYGSSSEDLLSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVRDRE-DLEWFLDELRA 162 (210)
T ss_pred eEEEEECCCCCCccChhhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEECCHH-HhHHHHHHHHh
Confidence 8899999999886444456799999999999999999999876321111357899999999998 6 579999975
No 96
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.54 E-value=1.5e-14 Score=170.32 Aligned_cols=143 Identities=17% Similarity=0.227 Sum_probs=114.8
Q ss_pred CChhhHHHHhcCCC-CccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEE-EEEeeC
Q 006697 456 PPIGVFFAAVAPHL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWA-PIFIRP 533 (635)
Q Consensus 456 ~p~~~ll~~~~p~l-~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v-~i~~~~ 533 (635)
..+|||+.+.++.. .+|+|||+|.+.. .+.++|+|+. .|..|+||+++++| +.+ .|.+|.
T Consensus 28 ~~pGQFv~l~~~~~~~~rp~Si~~~~~~-~g~i~~~vk~-----------vG~~T~~L~~l~~G------d~v~~v~GP~ 89 (752)
T PRK12778 28 RKPGQFVIVRVGEKGERIPLTIADADPE-KGTITLVIQE-----------VGLSTTKLCELNEG------DYITDVVGPL 89 (752)
T ss_pred CCCCeeEEEEeCCCCCeeEEEeeeeCCC-CCEEEEEEEE-----------cCchHHHHhcCCCC------CEeCeEeCCC
Confidence 46899988875543 4589999999854 5789999987 58899999999999 899 799999
Q ss_pred CCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEEE
Q 006697 534 SNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILAF 613 (635)
Q Consensus 534 g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a~ 613 (635)
|+|.+.. ..++++|||+|+||||+++++++... ++ .+++||||.|+.+ |++|.+||+++..+ ++++
T Consensus 90 G~~~~~~-~~~~~llvaGG~GiaPl~~l~~~l~~---~~---~~v~l~~g~r~~~-~l~~~~el~~~~~~-----~~~~- 155 (752)
T PRK12778 90 GNPSEIE-NYGTVVCAGGGVGVAPMLPIVKALKA---AG---NRVITILGGRSKE-LIILEDEMRESSDE-----VIIM- 155 (752)
T ss_pred CCCccCC-CCCeEEEEECCEeHHHHHHHHHHHHH---CC---CeEEEEeccCCHH-HhhhHHHHHhhcCe-----EEEE-
Confidence 9876653 34799999999999999999998765 22 4899999999999 99999999988652 2322
Q ss_pred ecCCC--CcccchhHHhcc
Q 006697 614 SREGS--QKEYVQHKMMDK 630 (635)
Q Consensus 614 SR~~~--~k~yVQd~l~~~ 630 (635)
+.+++ .++||++.+.+.
T Consensus 156 t~dg~~g~~G~v~~~l~~~ 174 (752)
T PRK12778 156 TDDGSYGRKGLVTDGLEEV 174 (752)
T ss_pred ECCCCCCCcccHHHHHHHH
Confidence 34443 568999877543
No 97
>PLN02631 ferric-chelate reductase
Probab=99.52 E-value=4.6e-14 Score=161.45 Aligned_cols=149 Identities=17% Similarity=0.176 Sum_probs=113.3
Q ss_pred CCChhhHHHHhcCC---CCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhh-cCCCCCCCCccEEEEE
Q 006697 455 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIF 530 (635)
Q Consensus 455 ~~p~~~ll~~~~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~ 530 (635)
+..+||++.+.+|. .+.|+|||+|+|..+++.++|+|+. .|..|++|.+ ++.++ +..++.+.
T Consensus 334 ~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~-----------~Gg~T~~L~~~l~~~g---~~i~V~Ve 399 (699)
T PLN02631 334 HYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRR-----------QGSWTQKLYTHLSSSI---DSLEVSTE 399 (699)
T ss_pred cCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEc-----------CChHHHHHHHhhhcCC---CeeEEEEE
Confidence 44678877766564 4679999999986556789999986 5888999987 54321 11467788
Q ss_pred eeCCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcC-CCCCcEEEEEeecCCCcccccHHHHHHH------HHc
Q 006697 531 IRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNF------EEE 603 (635)
Q Consensus 531 ~~~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g-~~~~~~~LffG~R~~~~d~ly~del~~~------~~~ 603 (635)
+|+|.|..+.....++||||+|+||||++|++++.+....++ ...+++.|+||+|+.+ |.+|.|||..+ .+
T Consensus 400 GPYG~~~~~~~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR~~~-dL~f~deL~~l~~~~~~l~- 477 (699)
T PLN02631 400 GPYGPNSFDVSRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFKHYH-DLAFLDLIFPLDISVSDIS- 477 (699)
T ss_pred CCCCCCCCCcCCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEECCHH-HhhhHHHHhhhccchhhhh-
Confidence 999987666555578999999999999999999987632211 1235899999999998 99999999863 22
Q ss_pred CCccEEEEEEecCCCC
Q 006697 604 GVISELILAFSREGSQ 619 (635)
Q Consensus 604 g~~~~l~~a~SR~~~~ 619 (635)
..+.++...+||+++.
T Consensus 478 ~~ni~i~iyVTR~~~~ 493 (699)
T PLN02631 478 RLNLRIEAYITREDKK 493 (699)
T ss_pred cCceEEEEEEcCCCCC
Confidence 3467889999998654
No 98
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=99.51 E-value=3.1e-13 Score=124.99 Aligned_cols=122 Identities=21% Similarity=0.357 Sum_probs=89.4
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCC----CCCChhHH
Q 006697 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGD----GEPTDNAA 159 (635)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~----G~~p~na~ 159 (635)
+.+.|+|.|.||||+++|++|... ...+++.+. +. +..+..+++++||||+ |+.|+.+.
T Consensus 1 ~~~~I~Y~S~TGNt~~f~~kl~~~---------~~~i~i~~~--~~------~~~~~~~~lv~PTy~~g~~~G~vP~~v~ 63 (134)
T PRK03600 1 MMMLVYFSSKTGNTHRFVQKLGLP---------ATRIPINER--ER------LEVDEPYILITPTYGGGGTAGAVPKQVI 63 (134)
T ss_pred CcEEEEEECCChhHHHHHHHhCCc---------ceEEecCCC--cc------ccCCCCEEEEEeccCCCCcCCcccHHHH
Confidence 357899999999999998888543 123455442 12 4566789999999999 69999999
Q ss_pred HHHHHHhcCCCCCCCCCCceEEEEEecCcch-hHHHHHHHHHHHHHHHCCCEEeecceeecCCC---CchHHHHHHHHHH
Q 006697 160 RFYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ---CIEDDFTAWRELV 235 (635)
Q Consensus 160 ~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~---~~e~~f~~W~~~l 235 (635)
+|++...+ ....++|||+||++| ++||.+++.+.+++. .|...-=+.. ...+.+.+|.+++
T Consensus 64 ~Fl~~~~n--------~~~~~gV~gsGnr~~g~~f~~a~~~i~~~~~-------vp~l~k~El~gt~~Dv~~~~~~~~~~ 128 (134)
T PRK03600 64 RFLNDEHN--------RKLLRGVIASGNRNFGDAFALAGDVISAKCQ-------VPLLYRFELSGTNEDVENVRKGVEEF 128 (134)
T ss_pred HHHhcccc--------CCcEEEEEEecCchHHHHHHHHHHHHHHHhC-------CCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 99877543 246899999999999 889999999999975 2222221222 2345567787777
Q ss_pred HH
Q 006697 236 WP 237 (635)
Q Consensus 236 ~~ 237 (635)
|.
T Consensus 129 ~~ 130 (134)
T PRK03600 129 WQ 130 (134)
T ss_pred Hh
Confidence 65
No 99
>PRK02551 flavoprotein NrdI; Provisional
Probab=99.50 E-value=2.8e-13 Score=127.58 Aligned_cols=137 Identities=15% Similarity=0.290 Sum_probs=89.9
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecC-CCCCCChhHHH-
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATY-GDGEPTDNAAR- 160 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTy-g~G~~p~na~~- 160 (635)
++++.|+|.|+||||++||++|...+.++..+.....+++.++..++. ..+.....+|+++||| |.|.+|+++..
T Consensus 1 ~~~~~I~Y~S~TGNt~rFv~kL~~~~~~~~~~~~~~~i~~~~~i~~~~---~~~~~~~p~vli~pTY~~gG~~~~~~~~~ 77 (154)
T PRK02551 1 MKTITLVYISLSGNTRSFVKRLSDYLATQHKDIEVNPINIKDLIHETT---DFFPETEPFVAFLPTYLEGGNGIDNGDVE 77 (154)
T ss_pred CCceEEEEEeCChhHHHHHHHHhcHHhhccccccceecccccccCccc---cccccCCCEEEEEeeecCCCCCcccCccc
Confidence 356899999999999999999998775421022233456555533210 0145667899999999 88866654332
Q ss_pred -----HHHHHhcCCCCCCCCCCceEEEEEecCcch-hHHHHHHHHHHHHHHHCCCEEeecceeecCCCCchHHHHHHHHH
Q 006697 161 -----FYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWREL 234 (635)
Q Consensus 161 -----F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~~~e~~f~~W~~~ 234 (635)
..++|.... .+++.++|||+||++| +.||.+|+.+++.+ +...++.. +-.+..+|.+.-.+.
T Consensus 78 ~vp~~v~dFL~~~~-----N~~~~~gVigsGNrNfg~~F~~aa~~ia~~~---~vP~L~~f----El~GT~~Dv~~v~~~ 145 (154)
T PRK02551 78 ILTTPLGDFIAYHD-----NAKRCLGIIGSGNRNFNNQYCLTAKQYAKRF---GFPMLADF----ELRGTPSDIERIAAI 145 (154)
T ss_pred cchHHHHHHHcchh-----hhhheEEEEeecccHHHHHHHHHHHHHHHHc---CCCEEEEe----eccCCHHHHHHHHHH
Confidence 222332221 3578899999999999 99999999999875 55444332 223445555544433
No 100
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.48 E-value=3.4e-14 Score=144.30 Aligned_cols=130 Identities=15% Similarity=0.095 Sum_probs=99.9
Q ss_pred CChhhHHHHhcCC----------------------CCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHh
Q 006697 456 PPIGVFFAAVAPH----------------------LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMK 513 (635)
Q Consensus 456 ~p~~~ll~~~~p~----------------------l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~ 513 (635)
..+||++.+.++. ...|.|||+|.+.. .++++|+|++.. ..|.+|+||.
T Consensus 27 ~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~-~~~l~~~v~~~~--------~~G~~s~~l~ 97 (235)
T cd06193 27 DGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPE-AGELDIDFVLHG--------DEGPASRWAA 97 (235)
T ss_pred CCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCC-CCEEEEEEEeCC--------CCCchHHHHh
Confidence 3578888887553 34699999998753 578999998743 0289999999
Q ss_pred hcCCCCCCCCccEEEEEeeCCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCccccc
Q 006697 514 NAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIY 593 (635)
Q Consensus 514 ~l~~g~~~~~~~~v~i~~~~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly 593 (635)
++++| +.|.|.+|.|.|.++. ..+++||||+||||||+++++++... . .+++++||+|+++ |.++
T Consensus 98 ~l~~G------d~v~v~gP~G~~~~~~-~~~~~vlia~GtGi~p~~~il~~~~~------~-~~~~~~~~~~~~~-d~~~ 162 (235)
T cd06193 98 SAQPG------DTLGIAGPGGSFLPPP-DADWYLLAGDETALPAIAAILEELPA------D-ARGTALIEVPDAA-DEQP 162 (235)
T ss_pred hCCCC------CEEEEECCCCCCCCCC-CcceEEEEeccchHHHHHHHHHhCCC------C-CeEEEEEEECCHH-Hccc
Confidence 99999 9999999999998864 45799999999999999999998642 2 5899999999986 5554
Q ss_pred HHHHHHHHHcCCccEEEEEEecC
Q 006697 594 EDELNNFEEEGVISELILAFSRE 616 (635)
Q Consensus 594 ~del~~~~~~g~~~~l~~a~SR~ 616 (635)
.+++ ..++++.+.+++
T Consensus 163 l~~~-------~~~~~~~~~~~~ 178 (235)
T cd06193 163 LPAP-------AGVEVTWLHRGG 178 (235)
T ss_pred cCCC-------CCcEEEEEeCCC
Confidence 3332 233555554443
No 101
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.45 E-value=3.3e-13 Score=161.06 Aligned_cols=148 Identities=13% Similarity=0.137 Sum_probs=111.3
Q ss_pred CChhhHHHHhcC-CCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEE-EEeeC
Q 006697 456 PPIGVFFAAVAP-HLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAP-IFIRP 533 (635)
Q Consensus 456 ~p~~~ll~~~~p-~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~-i~~~~ 533 (635)
..+|||+.+..+ .-..|+|||+|.+.. .+.++|+|+. .|..|.+|.++++| +.+. |.+|.
T Consensus 677 ~~PGQFv~L~~~~~ge~rP~SIas~~~~-~g~i~l~Vk~-----------vG~~T~~L~~lk~G------d~l~~I~GPl 738 (944)
T PRK12779 677 AQAGQFVRVLPWEKGELIPLTLADWDAE-KGTIDLVVQG-----------MGTSSLEINRMAIG------DAFSGIAGPL 738 (944)
T ss_pred CCCCceEEEEeCCCCCEEeEEccCCCCC-CCEEEEEEEe-----------eccHHHHHhcCCCc------CEEeeeecCC
Confidence 468999988743 233599999998754 5789999976 48889999999999 8994 99999
Q ss_pred CCC-cCCC-CCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHH---HHHHHHcCC-cc
Q 006697 534 SNF-KLPA-NPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDE---LNNFEEEGV-IS 607 (635)
Q Consensus 534 g~F-~lp~-~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~de---l~~~~~~g~-~~ 607 (635)
|+| .++. ...+++||||+|+||||+++++++... . ..+++|+||+|+++ |.+|.++ |++|++... .+
T Consensus 739 G~~f~~~~~~~~~~vllIAGGiGIAPl~sl~r~l~~---~---g~~V~li~G~Rs~e-dl~~~del~~L~~la~~~~~~~ 811 (944)
T PRK12779 739 GRASELHRYEGNQTVVFCAGGVGLPPVYPIMRAHLR---L---GNHVTLISGFRAKE-FLFWTGDDERVGKLKAEFGDQL 811 (944)
T ss_pred CCCcCCccccCCCcEEEEEccEeHHHHHHHHHHHHH---C---CCCEEEEEEeCCHH-HhhhHHHHHHHHHHHHHcCCCe
Confidence 976 4543 234699999999999999999998764 2 25899999999987 8888766 455665533 44
Q ss_pred EEEEEEecCCC--CcccchhHHhc
Q 006697 608 ELILAFSREGS--QKEYVQHKMMD 629 (635)
Q Consensus 608 ~l~~a~SR~~~--~k~yVQd~l~~ 629 (635)
+++++ +.+++ .+++|++.+.+
T Consensus 812 ~v~~t-tddgs~G~~G~Vt~~l~~ 834 (944)
T PRK12779 812 DVIYT-TNDGSFGVKGFVTGPLEE 834 (944)
T ss_pred EEEEE-ecCCCCCCccccChHHHH
Confidence 45544 44433 56889887643
No 102
>PRK06242 flavodoxin; Provisional
Probab=99.43 E-value=9.1e-13 Score=124.27 Aligned_cols=108 Identities=22% Similarity=0.268 Sum_probs=87.9
Q ss_pred CeEEEEEECC-CchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 006697 84 TKVTVFYGTQ-TGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (635)
Q Consensus 84 ~~v~I~YgSq-tGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~ 162 (635)
|+++|+|+|+ ||||+++|+.|++.+. ++++++.+....+ +.+++.+||++||| .|.+|+.+..|+
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~-------~~~~~i~~~~~~~------~~~~d~ii~g~pvy-~~~~~~~~~~fl 66 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLD-------AEVIDPGDVNPED------LSEYDLIGFGSGIY-FGKFHKSLLKLI 66 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcC-------cEEecHHHCCccc------HhHCCEEEEeCchh-cCCcCHHHHHHH
Confidence 5799999999 7999999999999883 4567777665555 78999999999999 688889999898
Q ss_pred HHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecc
Q 006697 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPL 215 (635)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~ 215 (635)
+.+.. ++++++++||.+..... ...+.+.+.|+++|++.+...
T Consensus 67 ~~~~~-------~~~k~~~~f~t~g~~~~---~~~~~l~~~l~~~g~~~~~~~ 109 (150)
T PRK06242 67 EKLPP-------VSGKKAFIFSTSGLPFL---KYHKALKKKLKEKGFEIVGEF 109 (150)
T ss_pred Hhhhh-------hcCCeEEEEECCCCCcc---hHHHHHHHHHHHCCCEEEEEE
Confidence 87753 56899999996544332 237899999999999988764
No 103
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.42 E-value=1.1e-12 Score=150.96 Aligned_cols=163 Identities=13% Similarity=0.127 Sum_probs=116.4
Q ss_pred CCChhhHHHHhcCC---CCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhh-cC----CCCCCCCccE
Q 006697 455 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AI----PLEGNGDCSW 526 (635)
Q Consensus 455 ~~p~~~ll~~~~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~-l~----~g~~~~~~~~ 526 (635)
+..+||++.+-+|. .+.|+|||+|+|..+++.++++|+. .|-.|+.|.+ ++ +|.....+.+
T Consensus 338 ~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~-----------~gG~T~~L~~~i~~~l~~g~~~~~~~~ 406 (722)
T PLN02844 338 KYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKC-----------EGGWTNSLYNKIQAELDSETNQMNCIP 406 (722)
T ss_pred CcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEe-----------CCCchHHHHHHHHhhccCCCCcccceE
Confidence 44678888776564 3689999999886556789999987 3445566654 32 2211112247
Q ss_pred EEEEeeCCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcC-CCCCcEEEEEeecCCCcccccHHHHHHHH----
Q 006697 527 APIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNFE---- 601 (635)
Q Consensus 527 v~i~~~~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g-~~~~~~~LffG~R~~~~d~ly~del~~~~---- 601 (635)
+.|.+|.|.|.++....++++|||+|||||||++++++.....+.. ....++.|+|++|+.+ |..|.+++....
T Consensus 407 v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR~~~-dL~~~del~~~l~~~~ 485 (722)
T PLN02844 407 VAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVKKSQ-DICLLNPISSLLLNQS 485 (722)
T ss_pred EEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhhHHHHHHHhHHhH
Confidence 8999999988766444579999999999999999999987522111 1236899999999999 999999986322
Q ss_pred HcCCccEEEEEEecCCCCcccchhHHhc
Q 006697 602 EEGVISELILAFSREGSQKEYVQHKMMD 629 (635)
Q Consensus 602 ~~g~~~~l~~a~SR~~~~k~yVQd~l~~ 629 (635)
.+....+++...+|+......+++.|..
T Consensus 486 ~~~~~lkl~iyVTRE~~~~~rl~~~i~~ 513 (722)
T PLN02844 486 SNQLNLKLKVFVTQEEKPNATLRELLNQ 513 (722)
T ss_pred HHhcCceEEEEECCCCCCCCchhhHhhc
Confidence 1223557888899988765577776655
No 104
>PLN02292 ferric-chelate reductase
Probab=99.38 E-value=2e-12 Score=148.31 Aligned_cols=150 Identities=16% Similarity=0.156 Sum_probs=108.0
Q ss_pred CChhhHHHHhcCC---CCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhh-cCCCCCCCCccEEEEEe
Q 006697 456 PPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAPIFI 531 (635)
Q Consensus 456 ~p~~~ll~~~~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~i~~ 531 (635)
..+||++-+..|. .+.|+|||+|+|..+++.++++|+. .|..|++|.+ ++.|+ ....-++.|.+
T Consensus 352 ~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~-----------~G~~T~~L~~~l~~gd-~i~~~~V~VeG 419 (702)
T PLN02292 352 YSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKS-----------QGKWSTKLYHMLSSSD-QIDRLAVSVEG 419 (702)
T ss_pred cCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEc-----------CCchhHHHHHhCCCCC-ccccceEEEEC
Confidence 3567666554453 4789999999986446789999986 5788899987 56662 11113678999
Q ss_pred eCCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcC-CCCCcEEEEEeecCCCcccccHHHHHHHH------HcC
Q 006697 532 RPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDG-AQLGPALLFFGCRNRRMDFIYEDELNNFE------EEG 604 (635)
Q Consensus 532 ~~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g-~~~~~~~LffG~R~~~~d~ly~del~~~~------~~g 604 (635)
|.|.|..+.....+++|||+|+||||+++++++..+...++ ....++.|+|++|+.+ |.++.+++.... .+.
T Consensus 420 PYG~~~~~~~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR~~~-Dl~~ld~l~~e~~~~~~l~~~ 498 (702)
T PLN02292 420 PYGPASTDFLRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFKNSS-DLSMLDLILPTSGLETELSSF 498 (702)
T ss_pred CccCCccccccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEECCHH-HhhHHHHHHHhhhhHHHHhhc
Confidence 99977544344569999999999999999999987532111 1136899999999999 998877554321 123
Q ss_pred CccEEEEEEecCCC
Q 006697 605 VISELILAFSREGS 618 (635)
Q Consensus 605 ~~~~l~~a~SR~~~ 618 (635)
...++.+.++|+.+
T Consensus 499 ~~~~i~iyvTr~~~ 512 (702)
T PLN02292 499 IDIQIKAFVTREKE 512 (702)
T ss_pred CCceEEEEEeCCCC
Confidence 45678888888766
No 105
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.36 E-value=1.5e-12 Score=156.71 Aligned_cols=143 Identities=16% Similarity=0.191 Sum_probs=110.0
Q ss_pred CChhhHHHHhcCC-CCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHH-hhcCCCCCCCCccEE-EEEee
Q 006697 456 PPIGVFFAAVAPH-LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWM-KNAIPLEGNGDCSWA-PIFIR 532 (635)
Q Consensus 456 ~p~~~ll~~~~p~-l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L-~~l~~g~~~~~~~~v-~i~~~ 532 (635)
..+|||+.+.++. ...|+|||++.+.. .+.|+|.|++ .|..|.|| .++++| +.+ .+.+|
T Consensus 28 ~~PGQFV~l~~~~~~errplSIa~~~~~-~g~i~l~vk~-----------vG~~T~~L~~~lk~G------d~l~~v~GP 89 (1006)
T PRK12775 28 AEPGHFVMLRLYEGAERIPLTVADFDRK-KGTITMVVQA-----------LGKTTREMMTKFKAG------DTFEDFVGP 89 (1006)
T ss_pred CCCCeeEEEEeCCCCeeEEEEecCcCCC-CCEEEEEEEe-----------cCcHHHHHHhcCCCC------CEEeeeecC
Confidence 4689999887543 34699999988743 5778888876 58999998 579999 888 79999
Q ss_pred CCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCccEEEEE
Q 006697 533 PSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVISELILA 612 (635)
Q Consensus 533 ~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~~~l~~a 612 (635)
.|.|.... ..+++||||+|+||||++++++.... .| .+++++||+|+.+ +.+|.+||+.+.. +++++
T Consensus 90 lG~~~~~~-~~~~vllVaGGiGIAPl~s~~r~l~~---~g---~~v~li~g~R~~~-~l~~~del~~~~~-----~~~v~ 156 (1006)
T PRK12775 90 LGLPQHID-KAGHVVLVGGGLGVAPVYPQLRAFKE---AG---ARTTGIIGFRNKD-LVFWEDKFGKYCD-----DLIVC 156 (1006)
T ss_pred CCCCCCCC-CCCeEEEEEEhHHHHHHHHHHHHHHh---CC---CcEEEEEeCCChH-HcccHHHHHhhcC-----cEEEE
Confidence 99664432 24699999999999999999998654 22 5799999999998 9999999987753 23332
Q ss_pred EecCCC--CcccchhHHhcc
Q 006697 613 FSREGS--QKEYVQHKMMDK 630 (635)
Q Consensus 613 ~SR~~~--~k~yVQd~l~~~ 630 (635)
+.+++ .+++|++.|.+.
T Consensus 157 -tddgs~G~~G~vt~~l~~~ 175 (1006)
T PRK12775 157 -TDDGSYGKPGFVTAALKEV 175 (1006)
T ss_pred -ECCCCCCCCCChHHHHHHH
Confidence 34433 568999877653
No 106
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=99.30 E-value=3.7e-11 Score=118.90 Aligned_cols=127 Identities=19% Similarity=0.086 Sum_probs=95.9
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCch------------HH--HhhhccCCeEEEEEecC
Q 006697 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDE------------QY--EEKLKKETLAFFMVATY 149 (635)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~------------~~--~~~l~~~~~vif~~sTy 149 (635)
.+|+|+|+|+||||+++|+.+++.+++. +|++++++++.+...++. .+ ..++..++.+||++|||
T Consensus 1 ~kilIiY~S~~G~T~~lA~~ia~g~~~~-~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty 79 (197)
T TIGR01755 1 VKVLVLYYSMYGHIETMARAVAEGAREV-DGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTR 79 (197)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHHHhc-CCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEeccc
Confidence 3799999999999999999999999752 278899998865432210 00 24577899999999999
Q ss_pred CCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEee
Q 006697 150 GDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (635)
Q Consensus 150 g~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~ 213 (635)
.|.++..+..|++++...... ..+.+|.+++|+.+....+-.......+...|..+|+..+.
T Consensus 80 -~g~~~~~lk~fld~~~~~~~~-~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv~ 141 (197)
T TIGR01755 80 -FGNMASQMRNFLDQTGGLWAS-GALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIVP 141 (197)
T ss_pred -ccCccHHHHHHHHhccccccc-cccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEeC
Confidence 899999999999998754211 23889999999965444444445556677777899997764
No 107
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=99.30 E-value=3.4e-11 Score=119.47 Aligned_cols=128 Identities=18% Similarity=0.085 Sum_probs=96.9
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHh-hhCCceEEEEeCCCCCcCch--------------HHHhhhccCCeEEEEEe
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKA-RYEKAAVKVVDLDDYAMDDE--------------QYEEKLKKETLAFFMVA 147 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~-~~~g~~~~v~dl~~~~~~~~--------------~~~~~l~~~~~vif~~s 147 (635)
+++|+|+|+|++|||+++|+.+++.+.+ . |++++++++.+....+. .-..++..++.+||++|
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~--G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP 78 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVA--GAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTP 78 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcC--CcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEec
Confidence 3689999999999999999999999987 6 89999999865332210 00456888999999999
Q ss_pred cCCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeec
Q 006697 148 TYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (635)
Q Consensus 148 Tyg~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~ 214 (635)
|| .|.+|..+..|++++...... ..+.+|.+++|+...+..+.--...+.+...|..+|+..+.+
T Consensus 79 ty-~g~~~~~lk~fld~~~~~~~~-~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv~~ 143 (200)
T PRK03767 79 TR-FGNMAGQMRNFLDQTGGLWAK-GALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVGL 143 (200)
T ss_pred cc-CCCchHHHHHHHHHhcccccc-CCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEeCC
Confidence 99 999999999999998653211 238899999999643332223344556666778899977653
No 108
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=99.28 E-value=3.6e-11 Score=116.99 Aligned_cols=87 Identities=21% Similarity=0.274 Sum_probs=75.8
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHHH
Q 006697 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (635)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~~ 163 (635)
|+++|+|+|.||||+++|+.|++.+.. |+.++++++++.+..+ +..++.+||++||| .|.+++.+..|++
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~---g~~v~~~~~~~~~~~~------l~~yD~vIlGspi~-~G~~~~~~~~fl~ 70 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKE---GIQCDVVNLHRIEEPD------LSDYDRVVIGASIR-YGHFHSALYKFVK 70 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCC---CCeEEEEEhhhcCccC------HHHCCEEEEECccc-cCCcCHHHHHHHH
Confidence 579999999999999999999999973 5778999999877656 88899999999999 8889999998887
Q ss_pred HHhcCCCCCCCCCCceEEEEEec
Q 006697 164 WFTEGNDRGPWLQQLKFGVFGLG 186 (635)
Q Consensus 164 ~L~~~~~~~~~l~~~~~aVFGlG 186 (635)
..... |+++++++|++|
T Consensus 71 ~~~~~------l~~K~v~~F~v~ 87 (177)
T PRK11104 71 KHATQ------LNQMPSAFFSVN 87 (177)
T ss_pred HHHHH------hCCCeEEEEEec
Confidence 65332 889999999988
No 109
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=99.27 E-value=7.1e-12 Score=111.24 Aligned_cols=77 Identities=25% Similarity=0.450 Sum_probs=62.5
Q ss_pred EEecCCCchhHHHHHHHHHHHHhcCCCCCcEEEEEeecCCCcccccHHHHHHHHHcCCc-cEEEEEEecCCC----Cccc
Q 006697 548 MVGPGTGLAPFRGFLQERMALKQDGAQLGPALLFFGCRNRRMDFIYEDELNNFEEEGVI-SELILAFSREGS----QKEY 622 (635)
Q Consensus 548 mIg~GTGIAPfrs~lq~r~~~~~~g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g~~-~~l~~a~SR~~~----~k~y 622 (635)
|||+|||||||+||++++... ...++++||||+|+.+ |++|++||+++++.... ++++.+ ++... .++|
T Consensus 1 lIagGtGIaP~~s~l~~~~~~----~~~~~v~l~~~~r~~~-~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~ 74 (109)
T PF00175_consen 1 LIAGGTGIAPFLSMLRYLLER----NDNRKVTLFYGARTPE-DLLFRDELEALAQEYPNRFHVVYV-SSPDDGWDGFKGR 74 (109)
T ss_dssp EEEEGGGGHHHHHHHHHHHHH----TCTSEEEEEEEESSGG-GSTTHHHHHHHHHHSTTCEEEEEE-TTTTSSTTSEESS
T ss_pred CeecceeHHHHHHHHHHHHHh----CCCCCEEEEEEEcccc-cccchhHHHHHHhhcccccccccc-cccccccCCceee
Confidence 899999999999999999874 2568999999999999 99999999999988765 334433 44333 4689
Q ss_pred chhHHhcc
Q 006697 623 VQHKMMDK 630 (635)
Q Consensus 623 VQd~l~~~ 630 (635)
|++.+.++
T Consensus 75 v~~~~~~~ 82 (109)
T PF00175_consen 75 VTDLLLED 82 (109)
T ss_dssp HHHHHHHH
T ss_pred hhHHHHHh
Confidence 99998543
No 110
>PRK07116 flavodoxin; Provisional
Probab=99.08 E-value=8.6e-10 Score=105.54 Aligned_cols=133 Identities=16% Similarity=0.167 Sum_probs=86.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCc-----------------------hHHHhhhccC
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-----------------------EQYEEKLKKE 139 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~-----------------------~~~~~~l~~~ 139 (635)
+|+++|+|.|.||||+.+|+.|++.+... . .++.+...|...+ .....++..+
T Consensus 2 m~k~lIvY~S~tGnT~~iA~~Ia~~l~~d--~--~~i~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~ 77 (160)
T PRK07116 2 NNKTLVAYFSATGTTKKVAEKLAEVTGAD--L--FEIKPEQPYTAADLDWNDKKSRSSVEMADKSSRPAIAKKIENIAEY 77 (160)
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhcCC--e--EEEeeCCCCCcchhhhhHhhhhHHHHhhcccchHHHHHHHhhHHhC
Confidence 68899999999999999999999998643 2 2333333222100 0012346788
Q ss_pred CeEEEEEecCCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEe-cCcchhHHHHHHHHHHHHHHHCCCEEeecceee
Q 006697 140 TLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVPLGLG 218 (635)
Q Consensus 140 ~~vif~~sTyg~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~g 218 (635)
+.|+|++|+| .|.+|..+..|++.+ . ++++++++|+. |.+.+ +.+...+.+.+.+.+ +.+-...
T Consensus 78 D~Iiig~Pv~-~~~~p~~v~~fl~~~---~-----l~~k~v~~f~T~g~~~~---g~~~~~~~~~~~~~~---~~~~~~~ 142 (160)
T PRK07116 78 DVIFLGFPIW-WYVAPRIINTFLESY---D-----FSGKTVIPFATSGGSGI---GNAEKELKKSYPDAN---WKEGRLL 142 (160)
T ss_pred CEEEEECChh-ccccHHHHHHHHHhc---C-----CCCCEEEEEEeCCCCCc---CcHHHHHHHHCCcCc---cccCeee
Confidence 9999999999 588888888887653 2 78899999997 55544 444555555543322 2221111
Q ss_pred cCCCCchHHHHHHHHHH
Q 006697 219 DDDQCIEDDFTAWRELV 235 (635)
Q Consensus 219 D~~~~~e~~f~~W~~~l 235 (635)
+ .+..+.++++|.+++
T Consensus 143 ~-~~~~~~~i~~wl~~~ 158 (160)
T PRK07116 143 N-GGASKEEIKEWINKL 158 (160)
T ss_pred c-CCCcHHHHHHHHHHc
Confidence 1 223467899998764
No 111
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=99.02 E-value=3e-09 Score=99.81 Aligned_cols=84 Identities=24% Similarity=0.376 Sum_probs=69.4
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCC--CcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHHHH
Q 006697 87 TVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDY--AMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKW 164 (635)
Q Consensus 87 ~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~--~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~~~ 164 (635)
+|+|+|.||||+++|+.|++.|.+. +..+|+.+. +..+ +.+++.|||++|+| .|.++..+.+|++.
T Consensus 1 LIvY~S~~G~Tk~~A~~ia~~l~~~-----~~~v~~~~~~~~~~~------~~~yD~vi~gspiy-~g~~~~~~~~fi~~ 68 (143)
T PF12724_consen 1 LIVYFSKTGNTKKIAEWIAEKLGEE-----GELVDLEKVEEDEPD------LSDYDAVIFGSPIY-AGRIPGEMREFIKK 68 (143)
T ss_pred CEEEECCCchHHHHHHHHHHHHhhh-----ccEEEHHhhhhcccc------cccCCEEEEEEEEE-CCcCCHHHHHHHHH
Confidence 5999999999999999999999876 445566664 2223 88999999999999 79999999999987
Q ss_pred HhcCCCCCCCCCCceEEEEEecCc
Q 006697 165 FTEGNDRGPWLQQLKFGVFGLGNR 188 (635)
Q Consensus 165 L~~~~~~~~~l~~~~~aVFGlGds 188 (635)
+.+. |+++++++|..|-.
T Consensus 69 ~~~~------l~~k~v~~f~~~~~ 86 (143)
T PF12724_consen 69 NKDN------LKNKKVALFSVGGS 86 (143)
T ss_pred HHHH------HcCCcEEEEEEeCC
Confidence 7543 78899999998644
No 112
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=98.97 E-value=2.3e-09 Score=97.14 Aligned_cols=115 Identities=23% Similarity=0.360 Sum_probs=71.4
Q ss_pred EEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCC----CChhHHHHHH
Q 006697 88 VFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGE----PTDNAARFYK 163 (635)
Q Consensus 88 I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~----~p~na~~F~~ 163 (635)
|+|.|.||||++|+++|...+... -+.+...+. + +.-....|+++||||.|+ .|....+|++
T Consensus 1 I~Y~S~tGNt~rFv~kL~~~~~~~-------~i~~~~~~~-~------~~~~ep~vLitpTy~~G~~~~~vp~~v~~FL~ 66 (122)
T PF07972_consen 1 IYYSSLTGNTRRFVEKLGLYAPAI-------RIPIREISP-D------LEVDEPFVLITPTYGFGENDGGVPKQVIRFLE 66 (122)
T ss_dssp EEE--SSSHHHHHHHHH-S--SEE-------EE-SSCTTS-T------S--SS-EEEEEE-BTTTBSSTSS-HHHHHHHH
T ss_pred CEEECCCcCHHHHHHHHcccchhc-------ccccccccc-c------ccCCCCEEEEecccCCCCCCCCCCHHHHHHHH
Confidence 799999999999999887654321 122222211 1 334567999999999999 9999998888
Q ss_pred HHhcCCCCCCCCCCceEEEEEecCcch-hHHHHHHHHHHHHHHHCCCEEeecceeecCCCCchHHHHHH
Q 006697 164 WFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 231 (635)
Q Consensus 164 ~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~~~e~~f~~W 231 (635)
+-.+. ..-.+|+|.||++| ..||.+++.+.+.+ +.-.++.. +..+.++|.+.-
T Consensus 67 ~~~N~--------~~l~GVigSGNrNfg~~f~~aa~~ia~ky---~VPll~kf----El~Gt~~Dv~~v 120 (122)
T PF07972_consen 67 NPDNR--------KLLRGVIGSGNRNFGDNFCLAADKIAEKY---GVPLLYKF----ELSGTPEDVERV 120 (122)
T ss_dssp SHHHG--------GGEEEEEEEE-GGGGGGTTHHHHHHHHHH---T--EEEEE----ETT--HHHHHHH
T ss_pred HHHHH--------hhheeEEecCCcHHHHHHHHHHHHHHHHc---CCCEEEEE----ecCCCHHHHHHH
Confidence 65553 46789999999999 89999999999876 54433322 223455555543
No 113
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=98.92 E-value=1.1e-08 Score=92.74 Aligned_cols=127 Identities=19% Similarity=0.310 Sum_probs=87.1
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCC----CCChhHHH
Q 006697 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDG----EPTDNAAR 160 (635)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G----~~p~na~~ 160 (635)
.+.|+|.|.||||.+|+++|. +. .+.+.+....+- +.-....|+++||||.| +.|....+
T Consensus 2 ~~~v~f~S~SgNt~RFv~kL~--~~----~~~I~~~~~~~~----------~~v~epyvlitpTyg~G~~~~~Vp~~vi~ 65 (141)
T COG1780 2 MLLVYFSSLSGNTHRFVEKLG--LP----AVRIPLNREEDP----------IEVDEPYVLITPTYGGGGTVGAVPKQVIR 65 (141)
T ss_pred ceEEEEEecCccHHHHHHHhC--CC----ceecccccccCC----------ccCCCCeEEEeccccCCCccCccCHHHHH
Confidence 478999999999999999887 11 222333322220 23345799999999999 89988776
Q ss_pred HHHHHhcCCCCCCCCCCceEEEEEecCcch-hHHHHHHHHHHHHHHHCCCEEeecceeecCCCCchHHHHHHHHHHHHHH
Q 006697 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNRQY-EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPEL 239 (635)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y-~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~~~e~~f~~W~~~l~~~L 239 (635)
|+.. .. ...+.-+|.|.||++| ..||.+++.+.+++ |.-.++..-+.-. ..+-..+.+|..++|+..
T Consensus 66 FLn~---~~-----Nr~~~rGViaSGN~NfG~~f~~Ag~~iS~k~---~vPlLy~FEL~GT-~~Dv~~v~~~v~~~~~~~ 133 (141)
T COG1780 66 FLNN---EH-----NRALCRGVIASGNRNFGDNFALAGDVISAKC---GVPLLYRFELLGT-AEDVAAVRKGVTEFWKRA 133 (141)
T ss_pred Hhcc---cc-----chhheEEEEecCCccHHHHHHHHHHHHHHHh---CCCEEEEEeccCC-HHHHHHHHHHHHHHHHhC
Confidence 6543 22 3467899999999999 89999999998765 5544443322100 022356677887777653
No 114
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=98.85 E-value=4.2e-08 Score=92.58 Aligned_cols=125 Identities=21% Similarity=0.276 Sum_probs=99.2
Q ss_pred CeEEEEEECCC--chHHHHHHHHHHHHHhhhCCceEEEEeCCCCCc---------------CchHHHhhhccCCeEEEEE
Q 006697 84 TKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM---------------DDEQYEEKLKKETLAFFMV 146 (635)
Q Consensus 84 ~~v~I~YgSqt--Gtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~---------------~~~~~~~~l~~~~~vif~~ 146 (635)
|||+|++||.. |+|+.+|+.+++.+++. |++++++++.++.. +-..+..++.+++.+||++
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~--g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~s 78 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEA--GAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFAS 78 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHT--TEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEE
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHc--CCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEee
Confidence 68999999986 99999999999999988 89999999998621 1133566788899999999
Q ss_pred ecCCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeec
Q 006697 147 ATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (635)
Q Consensus 147 sTyg~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~ 214 (635)
|+| .|.+|.-++.|++++.. .....+++|.+++++.|.+.... ..+...+...+..+|+..+..
T Consensus 79 P~y-~~~~s~~lK~~lD~~~~--~~~~~~~~K~~~~i~~~g~~~g~-~~~~~~l~~~~~~~~~~~~~~ 142 (152)
T PF03358_consen 79 PVY-NGSVSGQLKNFLDRLSC--WFRRALRGKPVAIIAVGGGRRGG-LRALEQLRQILDYLGMIVVPS 142 (152)
T ss_dssp EEB-TTBE-HHHHHHHHTHHH--THTTTTTTSEEEEEEEESSSSTT-HHHHHHHHHHHHHTTBEEECC
T ss_pred cEE-cCcCChhhhHHHHHhcc--ccccccCCCEEEEEEEecCCcHH-HHHHHHHHHHHHHCCCEEcCC
Confidence 999 99999999999999962 11123899999999987655433 335677888888899987655
No 115
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=98.74 E-value=6.9e-08 Score=92.21 Aligned_cols=96 Identities=27% Similarity=0.377 Sum_probs=72.9
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHh
Q 006697 87 TVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFT 166 (635)
Q Consensus 87 ~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~~~L~ 166 (635)
+|+|.|.||||+++|+.|++.|.. ..++++++.... +.+++++++++++| .|.+++.+++|++.|
T Consensus 1 lIvYsS~TGNTkkvA~aI~~~l~~------~~~~~~~~~~~~-------~~~yD~i~lG~w~d-~G~~d~~~~~fl~~l- 65 (160)
T PF12641_consen 1 LIVYSSRTGNTKKVAEAIAEALGA------KDIVSVEEPPED-------LEDYDLIFLGFWID-KGTPDKDMKEFLKKL- 65 (160)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC------ceeEeccccccC-------CCCCCEEEEEcCcc-CCCCCHHHHHHHHHc-
Confidence 489999999999999999999853 356677766432 56889999999999 799999988886664
Q ss_pred cCCCCCCCCCCceEEEEEe-cCcch-hHHHHHHHHHHHHHHH
Q 006697 167 EGNDRGPWLQQLKFGVFGL-GNRQY-EHFNKIGIVLDEELCK 206 (635)
Q Consensus 167 ~~~~~~~~l~~~~~aVFGl-Gds~Y-~~f~~~~k~ld~~L~~ 206 (635)
+++++++||. |--.. +++..+.+++.+.+.+
T Consensus 66 ---------~~KkV~lF~T~G~~~~s~~~~~~~~~~~~~~~~ 98 (160)
T PF12641_consen 66 ---------KGKKVALFGTAGAGPDSEYAKKILKNVEALLPK 98 (160)
T ss_pred ---------cCCeEEEEEecCCCCchHHHHHHHHHHHHhhcc
Confidence 5688999996 21111 5666677777666654
No 116
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=98.61 E-value=7.5e-08 Score=89.51 Aligned_cols=108 Identities=17% Similarity=0.189 Sum_probs=84.3
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHHH
Q 006697 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (635)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~~ 163 (635)
|+++|+|+|.+|+|.++|+.|+..|.+. |+++++.|+.....-+ +..++.||+++|.| .|........|+.
T Consensus 1 Mk~LIlYstr~GqT~kIA~~iA~~L~e~--g~qvdi~dl~~~~~~~------l~~ydavVIgAsI~-~~h~~~~~~~Fv~ 71 (175)
T COG4635 1 MKTLILYSTRDGQTRKIAEYIASHLRES--GIQVDIQDLHAVEEPA------LEDYDAVVIGASIR-YGHFHEAVQSFVK 71 (175)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHhhhc--CCeeeeeehhhhhccC------hhhCceEEEecchh-hhhhHHHHHHHHH
Confidence 6899999999999999999999999999 8999999998765434 78999999999999 8888888777776
Q ss_pred HHhcCCCCCCCCCCceEEEEEecCcchhHH---HHHHHHHHHHHHHC
Q 006697 164 WFTEGNDRGPWLQQLKFGVFGLGNRQYEHF---NKIGIVLDEELCKQ 207 (635)
Q Consensus 164 ~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f---~~~~k~ld~~L~~l 207 (635)
.-... |.+++.|+|.++= .|..+ -..-..+++.|.+-
T Consensus 72 k~~e~------L~~kP~A~f~vnl-~a~k~k~~~e~~~yv~kfl~~~ 111 (175)
T COG4635 72 KHAEA------LSTKPSAFFSVNL-TARKEKRTPETNSYVRKFLMKS 111 (175)
T ss_pred HHHHH------HhcCCceEEEeeh-hhcccccCchHHHHHHHHHhcC
Confidence 54442 8889999998752 23222 23334555655543
No 117
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=98.57 E-value=2.9e-08 Score=99.29 Aligned_cols=98 Identities=17% Similarity=0.271 Sum_probs=75.9
Q ss_pred CCChhhHHHHhcC--CC---CccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhh-cCCCCCCCCccEEE
Q 006697 455 TPPIGVFFAAVAP--HL---QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIPLEGNGDCSWAP 528 (635)
Q Consensus 455 ~~p~~~ll~~~~p--~l---~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~-l~~g~~~~~~~~v~ 528 (635)
...+||++.+++- ++ .-|.||.|+......+.++|.|+.+- .|+.|+|+++ ++.| |.|.
T Consensus 180 ~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~A---------~G~VS~~~H~~~KVG------D~v~ 244 (385)
T KOG3378|consen 180 HAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRVA---------GGVVSNFVHDNLKVG------DIVG 244 (385)
T ss_pred cCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeehh---------chhhHHHhhcccccc------ceee
Confidence 3467888776532 22 13555555544444688999998765 6999999998 9999 9999
Q ss_pred EEeeCCCCcCCC---CCCCcEEEEecCCCchhHHHHHHHHHH
Q 006697 529 IFIRPSNFKLPA---NPSVPIIMVGPGTGLAPFRGFLQERMA 567 (635)
Q Consensus 529 i~~~~g~F~lp~---~~~~piImIg~GTGIAPfrs~lq~r~~ 567 (635)
+..|.|+|.... +..+|+++.++|+||+|+.+++++.+.
T Consensus 245 ~S~PAG~F~~~r~~~~~N~PL~~~a~GiGiTPLi~iiE~~~~ 286 (385)
T KOG3378|consen 245 VSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALL 286 (385)
T ss_pred ccCCCccceeehhhhccCCceEEecCCcCccccHHHHHHHHh
Confidence 999999997753 356999999999999999999999764
No 118
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=98.47 E-value=6.5e-06 Score=81.13 Aligned_cols=120 Identities=13% Similarity=0.187 Sum_probs=97.1
Q ss_pred CeEEEEEECCC--chHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCc-----------hHHHhhhccCCeEEEEEecCC
Q 006697 84 TKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-----------EQYEEKLKKETLAFFMVATYG 150 (635)
Q Consensus 84 ~~v~I~YgSqt--Gtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~-----------~~~~~~l~~~~~vif~~sTyg 150 (635)
|+|+++.||-. ++|..+++.+.+.+.+. |++++++|+.++..++ ..+..++...+.+||++|.|
T Consensus 1 mkIl~I~GSpr~~S~t~~l~~~~~~~l~~~--g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y- 77 (191)
T PRK10569 1 MRVITLAGSPRFPSRSSALLEYAREWLNGL--GVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVY- 77 (191)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHHHhC--CCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCcc-
Confidence 58999999984 78999999999999988 8899999887765422 12445577889999999999
Q ss_pred CCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEe
Q 006697 151 DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (635)
Q Consensus 151 ~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v 212 (635)
.|..|.-.+.|++|+... .+++|.+++++.| ....+.-..-..+...|..+|+..+
T Consensus 78 ~~s~pg~LKn~iD~l~~~-----~l~~K~v~iiat~-G~~~~~~~~~~~lr~~l~~l~a~~~ 133 (191)
T PRK10569 78 KASFSGALKTLLDLLPER-----ALEHKVVLPLATG-GSVAHMLAVDYALKPVLSALKAQEI 133 (191)
T ss_pred CCCCCHHHHHHHHhCChh-----hhCCCEEEEEEec-CCchhHHHHHHHHHHHHHHcCCeec
Confidence 999999999999999542 3899999999998 5556655554667778888999754
No 119
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=98.41 E-value=2.3e-06 Score=81.61 Aligned_cols=132 Identities=18% Similarity=0.214 Sum_probs=74.2
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCc---C------c--hH------------HHhhhccCCe
Q 006697 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM---D------D--EQ------------YEEKLKKETL 141 (635)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~---~------~--~~------------~~~~l~~~~~ 141 (635)
|++|+|-|.||||+++|+.|++.+... -.++.....|.. + . .+ ...++.+++.
T Consensus 1 K~LVvYyS~tGnT~~vA~~Ia~~~gad----i~eI~~~~~Y~~~~~~y~~~~~~~~~e~~~~~~~P~i~~~~~d~~~YD~ 76 (156)
T PF12682_consen 1 KTLVVYYSRTGNTKKVAEKIAEKTGAD----IFEIEPVKPYPSDDLDYRKCISRAKREIKDNNERPEIKPQIPDLSDYDT 76 (156)
T ss_dssp -EEEEE--SSSHHHHHHHHHHHCCT-E----EEE-BBSTTSSTGGCSCCHCCCHHHHHHTTTT----BC---S-GGG-SE
T ss_pred CEEEEEECCCchHHHHHHHHHHHHCCC----EEEEEeCCCCCcchhhHHHHHHHHHHHHhcccccccccccccCcccCCE
Confidence 589999999999999999999876321 122223333332 0 0 00 1224678899
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEe-cCcchhHHHHHHHHHHHHHHHCCCEEeecceeecC
Q 006697 142 AFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDD 220 (635)
Q Consensus 142 vif~~sTyg~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~ 220 (635)
|+++.|+| -|.+|.-+..|++. .. ++|++++.|.. |.+. ++...+.+.+.+. +++.. +-.....
T Consensus 77 I~lG~PvW-~~~~~~pv~tFL~~---~~-----~~gK~v~~F~T~ggs~---~~~~~~~l~~~~~--~a~i~-~g~~~~~ 141 (156)
T PF12682_consen 77 IFLGTPVW-WGTPPPPVRTFLEQ---YD-----FSGKTVIPFCTSGGSG---FGNSLEDLKKLCP--GATIL-EGLAINR 141 (156)
T ss_dssp EEEEEEEE-TTEE-CHHHHHHHC---TT-----TTTSEEEEEEE-SS-----CHHHHHHHHHH-T--TSEE----EE---
T ss_pred EEEechHH-cCCCCHHHHHHHHh---cC-----CCCCcEEEEEeeCCCC---hhHHHHHHHHHCC--CCEee-cCeEEeC
Confidence 99999999 88888887777653 32 88999999975 3222 3445556654442 44433 2222222
Q ss_pred CCCchHHHHHHHHHH
Q 006697 221 DQCIEDDFTAWRELV 235 (635)
Q Consensus 221 ~~~~e~~f~~W~~~l 235 (635)
+.-.++++.+|.++|
T Consensus 142 ~~~~~~~i~~Wl~~i 156 (156)
T PF12682_consen 142 GSVSEEEIKEWLKKI 156 (156)
T ss_dssp S---HHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHhC
Confidence 212678999998764
No 120
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=98.28 E-value=1.9e-05 Score=76.37 Aligned_cols=119 Identities=12% Similarity=0.196 Sum_probs=92.7
Q ss_pred eEEEEEECC--CchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCc-----------hHHHhhhccCCeEEEEEecCCC
Q 006697 85 KVTVFYGTQ--TGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-----------EQYEEKLKKETLAFFMVATYGD 151 (635)
Q Consensus 85 ~v~I~YgSq--tGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~-----------~~~~~~l~~~~~vif~~sTyg~ 151 (635)
+|+++.||- .++|.++++.+.+.+.+. +.+++++|+.++...+ ..+.+++...+.+||++|.| +
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~~--~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y-~ 77 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQEQ--GVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVY-K 77 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHC--CCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCcc-c
Confidence 588999995 788999999999999877 7778888887654321 22445566889999999999 9
Q ss_pred CCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEe
Q 006697 152 GEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (635)
Q Consensus 152 G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v 212 (635)
|.+|...+.|++|+... .+.+|.+++++.| ..+.++...-..+...|..+|+..+
T Consensus 78 ~sip~~LK~~iD~~~~~-----~l~~K~v~~~~~g-g~~~~~~~~~~~l~~~l~~l~~~~~ 132 (171)
T TIGR03567 78 ASYSGVLKALLDLLPQR-----ALRGKVVLPIATG-GSIAHLLAIDYALKPVLSALGARHI 132 (171)
T ss_pred CCCCHHHHHHHHhCChh-----hhCCCEEEEEEcC-CchhHHHHHHHHHHHHHHHcCCccc
Confidence 99999999999998532 2889999998887 4555555544568888889999644
No 121
>PRK00170 azoreductase; Reviewed
Probab=98.23 E-value=5.6e-05 Score=74.70 Aligned_cols=157 Identities=11% Similarity=-0.014 Sum_probs=105.9
Q ss_pred CCeEEEEEECC--C-chHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcC---------------------------chHH
Q 006697 83 KTKVTVFYGTQ--T-GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD---------------------------DEQY 132 (635)
Q Consensus 83 ~~~v~I~YgSq--t-Gtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~---------------------------~~~~ 132 (635)
+|+|+|++||- . |+|..+|+.+.+.+++++++.+++++||.+.+.. -.++
T Consensus 1 Mmkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l 80 (201)
T PRK00170 1 MSKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDEL 80 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence 57899999996 3 8899999999999988766788999998655421 0123
Q ss_pred HhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCC--------CCCCCCCCceEEEEEecCcch--hHHHHHHHHHHH
Q 006697 133 EEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGN--------DRGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDE 202 (635)
Q Consensus 133 ~~~l~~~~~vif~~sTyg~G~~p~na~~F~~~L~~~~--------~~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~ 202 (635)
..++...+.+||++|.| .+..|.-.+.|++++.... .....++++++.++......+ .....+...+..
T Consensus 81 ~~~i~~AD~iV~~sP~y-~~~~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~~~ 159 (201)
T PRK00170 81 LEEFLAADKIVIAAPMY-NFSIPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYLKT 159 (201)
T ss_pred HHHHHHCCEEEEeeccc-ccCCcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHHHH
Confidence 45577889999999999 8889999999999975311 111347899999888633222 222344566777
Q ss_pred HHHHCCCEEeecceeecCCCCchHHHHHHHHHHHHHHHH
Q 006697 203 ELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 241 (635)
Q Consensus 203 ~L~~lGa~~v~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 241 (635)
.|.-+|.+.+..+....- ....+.-++|.++....+.+
T Consensus 160 ~~~~~G~~~~~~~~~~g~-~~~~~~~~~~~~~a~~~~~~ 197 (201)
T PRK00170 160 FLGFIGITDVEFVFAEGH-NYGPEKAAKIISAAKAAADE 197 (201)
T ss_pred HHHhcCCCceEEEEEecc-cCCchHHHHHHHHHHHHHHH
Confidence 788889875544332221 11233345566555444443
No 122
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=98.22 E-value=3.7e-07 Score=79.78 Aligned_cols=67 Identities=22% Similarity=0.162 Sum_probs=55.8
Q ss_pred CCChhhHHHHhcCC---CCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEe
Q 006697 455 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFI 531 (635)
Q Consensus 455 ~~p~~~ll~~~~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~ 531 (635)
...+||++.+.++. ...|+|||+|.|.. ++.++|+|+..+ .|.+|+||+++++| +.|.|.+
T Consensus 29 ~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~-~~~~~~~ik~~~---------~G~~S~~L~~l~~G------d~v~i~g 92 (99)
T PF00970_consen 29 DFKPGQFVSVRVPINGKQVSRPYSPASSPDD-KGYLEFAIKRYP---------NGRVSRYLHQLKPG------DEVEIRG 92 (99)
T ss_dssp SSTTT-EEEEEEEETTEEEEEEEEBCSSTTS-SSEEEEEEEECT---------TSHHHHHHHTSCTT------SEEEEEE
T ss_pred ccCcceEEEEEEccCCcceecceeEeeecCC-CCcEEEEEEecc---------CCHHHHHHHhCCCC------CEEEEEE
Confidence 35789999888662 24699999999964 678999999853 69999999999999 9999999
Q ss_pred eCCCCc
Q 006697 532 RPSNFK 537 (635)
Q Consensus 532 ~~g~F~ 537 (635)
|.|+|.
T Consensus 93 P~G~f~ 98 (99)
T PF00970_consen 93 PYGNFT 98 (99)
T ss_dssp EESSEE
T ss_pred cccccC
Confidence 999985
No 123
>PRK09739 hypothetical protein; Provisional
Probab=98.15 E-value=7.8e-05 Score=73.88 Aligned_cols=157 Identities=13% Similarity=0.059 Sum_probs=106.5
Q ss_pred CCeEEEEEECC--CchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCc---------------------CchHHHhhhccC
Q 006697 83 KTKVTVFYGTQ--TGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM---------------------DDEQYEEKLKKE 139 (635)
Q Consensus 83 ~~~v~I~YgSq--tGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~---------------------~~~~~~~~l~~~ 139 (635)
+++|+|++||- .|+|..+++.+.+++++. |.+++++|+.+.+. +-..+..++...
T Consensus 3 mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~--g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A 80 (199)
T PRK09739 3 SMRIYLVWAHPRHDSLTAKVAEAIHQRAQER--GHQVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEH 80 (199)
T ss_pred CceEEEEEcCCCCCCcHHHHHHHHHHHHHHC--CCEEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhC
Confidence 68999999997 577899999999999988 78888888865321 113456678889
Q ss_pred CeEEEEEecCCCCCCChhHHHHHHHHhcCCC---CCCCCCCceEEEEEecCcchhHHHH------HHHHHH-HHHHHCCC
Q 006697 140 TLAFFMVATYGDGEPTDNAARFYKWFTEGND---RGPWLQQLKFGVFGLGNRQYEHFNK------IGIVLD-EELCKQGG 209 (635)
Q Consensus 140 ~~vif~~sTyg~G~~p~na~~F~~~L~~~~~---~~~~l~~~~~aVFGlGds~Y~~f~~------~~k~ld-~~L~~lGa 209 (635)
+.+||++|.| .+.+|.-.+.|++++-.... .+..|.+++..++......|.+|.. +...+. ..+.-+|.
T Consensus 81 D~iV~~~P~y-~~~~Pa~LK~~iD~v~~~g~~y~~~~~l~~k~~~~v~t~g~~~~~~~~~~~~~~~~~~l~~~~~~~~G~ 159 (199)
T PRK09739 81 DALVFVFPLW-WYSFPAMLKGYIDRVWNNGLAYGDGHKLPFNKVRWVALVGGSKESFVKRGWEKNMSDYLNVGMASYLGI 159 (199)
T ss_pred CEEEEECchh-hhcchHHHHHHHHHHccccccccCCccCCCCeEEEEEecCCChHHhcccccccHHHHHHHhhhhhcCCc
Confidence 9999999999 88889999999998743110 0134788888887764344444322 223333 33445677
Q ss_pred EEeecceeecCC-----CCchHHHHHHHHHHHHHHHHh
Q 006697 210 ARLVPLGLGDDD-----QCIEDDFTAWRELVWPELDQL 242 (635)
Q Consensus 210 ~~v~~~g~gD~~-----~~~e~~f~~W~~~l~~~L~~~ 242 (635)
+.+.....+.-. +...+...+|.+++.....++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~ 197 (199)
T PRK09739 160 EDSDVTFLYNTLVFDGEELHASHYQSLLSQAREMVDAL 197 (199)
T ss_pred cccceEEEecccccccccCCHHHHHHHHHHHHHHHHHh
Confidence 654333333222 345678899998887666543
No 124
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=98.12 E-value=5.7e-05 Score=73.24 Aligned_cols=120 Identities=19% Similarity=0.173 Sum_probs=89.4
Q ss_pred eEEEEEECC--CchHHHHHHHHHHHHHhhhCCceEEEEeCCCCC------------cCc-hHHHhhhccCCeEEEEEecC
Q 006697 85 KVTVFYGTQ--TGTAEGFAKALAEEIKARYEKAAVKVVDLDDYA------------MDD-EQYEEKLKKETLAFFMVATY 149 (635)
Q Consensus 85 ~v~I~YgSq--tGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~------------~~~-~~~~~~l~~~~~vif~~sTy 149 (635)
||+++.||. .|++..+|+.+.+.+.++. |++++++|+.+++ .++ ..+.+++...+.+||++|+|
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~-g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y 79 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARL-GISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLVVGSPVY 79 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhc-CCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEEEECCcC
Confidence 589999998 5899999999999886432 5788888886652 000 23556678899999999999
Q ss_pred CCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEe
Q 006697 150 GDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (635)
Q Consensus 150 g~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v 212 (635)
+|.+|.-.+.|++|+... .+.+|++++++.|.... +...+...+...|..+|+..+
T Consensus 80 -~~s~~~~LKn~lD~~~~~-----~l~~K~~~~v~~~g~~~-~~~~~~~~l~~~~~~l~~~~~ 135 (174)
T TIGR03566 80 -RGSYTGLFKHLFDLVDPN-----ALIGKPVLLAATGGSER-HALMVEHQLRPLFGFFQALTL 135 (174)
T ss_pred -cCcCcHHHHHHHHhcCHh-----HhCCCEEEEEEecCCcc-chHHHHHHHHHHHHHhCcccc
Confidence 999999999999998632 38899999999875433 222233446667777887654
No 125
>PRK01355 azoreductase; Reviewed
Probab=98.10 E-value=0.00015 Score=71.98 Aligned_cols=158 Identities=13% Similarity=0.127 Sum_probs=108.6
Q ss_pred CCeEEEEEECCC----chHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcC----------------c-hHHHhhhccCCe
Q 006697 83 KTKVTVFYGTQT----GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD----------------D-EQYEEKLKKETL 141 (635)
Q Consensus 83 ~~~v~I~YgSqt----Gtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~----------------~-~~~~~~l~~~~~ 141 (635)
|++|+|+.||-. |++..+|+.+.+++++..++.+++++||.+.... + +.+..++...+.
T Consensus 1 M~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~ 80 (199)
T PRK01355 1 MSKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKSVDK 80 (199)
T ss_pred CCeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHhCCE
Confidence 578999999985 8899999999999987533678888988765431 1 235566778899
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHhcCC--------CC---CCCCCCceEEEEEecCcchh--HHHHHHHHHHHHHHHCC
Q 006697 142 AFFMVATYGDGEPTDNAARFYKWFTEGN--------DR---GPWLQQLKFGVFGLGNRQYE--HFNKIGIVLDEELCKQG 208 (635)
Q Consensus 142 vif~~sTyg~G~~p~na~~F~~~L~~~~--------~~---~~~l~~~~~aVFGlGds~Y~--~f~~~~k~ld~~L~~lG 208 (635)
+||++|.| .+.+|.-.+.|++++.... .. ...++++++.++........ .+......+...+.-+|
T Consensus 81 iV~~sP~y-~~~ipa~LK~~iDrv~~~~~~f~y~~~~~~~~~gll~~kk~~vi~T~G~~~~~~~~~~~~~~l~~~~~~~G 159 (199)
T PRK01355 81 VVISCPMT-NFNVPATLKNYLDHIAVANKTFSYKYSKKGDAIGLLDHLKVQILTTQGAPLGWYPWGSHTNYLEGTWEFLG 159 (199)
T ss_pred EEEEcCcc-ccCChHHHHHHHHHHHhcCCceEecccCCCCcccccCCCEEEEEEecCCCCCccCccchHHHHHHHHHhcC
Confidence 99999999 8999999999999975321 01 13478888877665332211 13455667778888899
Q ss_pred CEEeecceeecCCC-Cc-hHHHHHHHHHHHHHHHH
Q 006697 209 GARLVPLGLGDDDQ-CI-EDDFTAWRELVWPELDQ 241 (635)
Q Consensus 209 a~~v~~~g~gD~~~-~~-e~~f~~W~~~l~~~L~~ 241 (635)
.+.+.......... .. .+....|.+.-.+++.+
T Consensus 160 ~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 194 (199)
T PRK01355 160 AKVVDSILLAGTKVEPLSNKTPKEIVEEFDKEIIE 194 (199)
T ss_pred CCceeEEEEecccCCccccccHHHHHHHHHHHHHH
Confidence 98765554433222 11 13367777666665554
No 126
>PRK06934 flavodoxin; Provisional
Probab=98.07 E-value=4.2e-05 Score=76.74 Aligned_cols=125 Identities=10% Similarity=0.079 Sum_probs=74.7
Q ss_pred CCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCc-------------------CchHHHhhhccCCeEEEEEecCCCCC
Q 006697 93 QTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM-------------------DDEQYEEKLKKETLAFFMVATYGDGE 153 (635)
Q Consensus 93 qtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~-------------------~~~~~~~~l~~~~~vif~~sTyg~G~ 153 (635)
.||||+.+|+.|++.+... -++++ ..+.|.. +-.....++..++.|+++.|.| -|.
T Consensus 69 ~~GnTk~vAe~Ia~~~gaD--l~eI~--~~~~Y~~~yd~~~~~a~~E~~~~~~P~L~~~~~dl~~YD~I~IG~PIW-wg~ 143 (221)
T PRK06934 69 VLGSTQYVAQIIQEETGGD--LFRIE--TVKPYPRQHDPLLKYAEQEVKEGGRPEMREKIQNLADYDQIFIGYPIW-WYK 143 (221)
T ss_pred CCCHHHHHHHHHHHHHCCC--EEEEE--EccccCCCCchhhhHHHHhhhcCCCHHHHHHHHhHHhCCEEEEEcchh-hcc
Confidence 3399999999999988532 12222 2222211 0011234578899999999999 888
Q ss_pred CChhHHHHHHHHhcCCCCCCCCCCceEEEEEe-cCcchhHHHHHHHHHHHHHHHCCCEEeeccee--ecCCC--CchHHH
Q 006697 154 PTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GNRQYEHFNKIGIVLDEELCKQGGARLVPLGL--GDDDQ--CIEDDF 228 (635)
Q Consensus 154 ~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~--gD~~~--~~e~~f 228 (635)
+|.-+..|++.. . ++|++++.|.. |-+ .+....+.+.+.+. +++.+.+-.. +++.. ..++++
T Consensus 144 ~P~~V~tFLe~~---d-----~~GK~I~pF~T~ggs---g~g~s~~~i~~l~~--~a~~v~~Gl~i~~~~~~~~~~~~~I 210 (221)
T PRK06934 144 MPMVMYSFFEQH---D-----FSGKTLIPFTTHGGS---RFSDSLREIKRLQP--NAQLVTQGLAISRNDVTDDDTPKEI 210 (221)
T ss_pred ccHHHHHHHHhc---C-----CCCCEEEEEEecCCC---CccchHHHHHHHcC--CcceeccceeeecCcccccchHHHH
Confidence 888888776544 2 88999999985 222 23334445544432 3422322111 22211 247889
Q ss_pred HHHHHHH
Q 006697 229 TAWRELV 235 (635)
Q Consensus 229 ~~W~~~l 235 (635)
.+|.+++
T Consensus 211 ~~Wl~~l 217 (221)
T PRK06934 211 INWLNTL 217 (221)
T ss_pred HHHHHHc
Confidence 9998654
No 127
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.04 E-value=9.4e-06 Score=96.08 Aligned_cols=83 Identities=14% Similarity=0.092 Sum_probs=69.4
Q ss_pred CChhhHHHHhcC-----CC-CccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEE
Q 006697 456 PPIGVFFAAVAP-----HL-QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPI 529 (635)
Q Consensus 456 ~p~~~ll~~~~p-----~l-~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i 529 (635)
.-+|||+.+-.+ .+ .||++||++.... .+.++|++++ .|..|.+|+++++| +.+.|
T Consensus 819 ~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e-~g~It~i~rv-----------VGkgT~~Ls~l~~G------d~v~v 880 (1028)
T PRK06567 819 FKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVE-KGLISFIVFE-----------VGKSTSLCKTLSEN------EKVVL 880 (1028)
T ss_pred CCCCceEEEEeCCCCCccccCceeEEeeccCCC-CCEEEEEEEE-----------EChHHHHHhcCCCC------CEEEE
Confidence 458999988743 23 5789999998654 5789999998 59999999999999 89999
Q ss_pred EeeCC-CCcCCCCCCCcEEEEecCCCchhH
Q 006697 530 FIRPS-NFKLPANPSVPIIMVGPGTGLAPF 558 (635)
Q Consensus 530 ~~~~g-~F~lp~~~~~piImIg~GTGIAPf 558 (635)
.+|.| .|.++. ...+++||+|+|+||+
T Consensus 881 ~GPLG~pF~i~~--~k~vLLVgGGVGiApL 908 (1028)
T PRK06567 881 MGPTGSPLEIPQ--NKKIVIVDFEVGNIGL 908 (1028)
T ss_pred EcccCCCCCCCC--CCeEEEEEccccHHHH
Confidence 99999 798864 3589999999999983
No 128
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=98.02 E-value=0.00021 Score=70.67 Aligned_cols=152 Identities=17% Similarity=0.098 Sum_probs=109.4
Q ss_pred CeEEEEEECCCc---hHHHHHHHHHHHHHhhhCC-ceEEEEeCCCC----------------------CcCchHHHhhhc
Q 006697 84 TKVTVFYGTQTG---TAEGFAKALAEEIKARYEK-AAVKVVDLDDY----------------------AMDDEQYEEKLK 137 (635)
Q Consensus 84 ~~v~I~YgSqtG---tte~~A~~l~~~l~~~~~g-~~~~v~dl~~~----------------------~~~~~~~~~~l~ 137 (635)
|+|+|++||-.+ ++..+++.+.+.++++ + .++.+.||... +...+. ++++.
T Consensus 1 mkiLvI~asp~~~~S~s~~l~~~~~~~~~~~--~~~~v~~~dL~~~~~p~l~~~~~~~~~~~~~~~~~d~~~~~-~~~l~ 77 (199)
T PF02525_consen 1 MKILVINASPRPEGSFSRALADAFLEGLQEA--GPHEVEIRDLYEEFLPVLDSECFAAFRTYEQGPAIDVQSEQ-IEELL 77 (199)
T ss_dssp EEEEEEE--SSTTTSHHHHHHHHHHHHHHHH--TTSEEEEEETTTTT--SSSHHHHHHHHHHHHTHHHHHHHHH-HHHHH
T ss_pred CEEEEEEcCCCCccCHHHHHHHHHHHHHHHc--CCCEEEEEECcccccccchHHHHHhhhhhhhhhhhhHHHHH-HHHHH
Confidence 689999999987 5899999999999999 6 88999999874 111112 36678
Q ss_pred cCCeEEEEEecCCCCCCChhHHHHHHHHhc--CCC--------CCCCCCCceEEEEEe-cCcch--h-------HHHHHH
Q 006697 138 KETLAFFMVATYGDGEPTDNAARFYKWFTE--GND--------RGPWLQQLKFGVFGL-GNRQY--E-------HFNKIG 197 (635)
Q Consensus 138 ~~~~vif~~sTyg~G~~p~na~~F~~~L~~--~~~--------~~~~l~~~~~aVFGl-Gds~Y--~-------~f~~~~ 197 (635)
..+.+||+.|.| .+.+|.-.+.|++.+-. ... ....|+|+++.++-. |...+ . .+..+.
T Consensus 78 ~AD~iV~~~Pl~-~~~~Pa~lK~~iD~v~~~g~~~~~~~g~~~~~~~L~gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~ 156 (199)
T PF02525_consen 78 WADHIVFAFPLY-WFSMPAQLKGWIDRVFTPGFTFYTPDGKYPSGGLLKGKKALLIVTSGGPEYSYGPPGIPGRSMDHLL 156 (199)
T ss_dssp HSSEEEEEEEEB-TTBC-HHHHHHHHHHSHTTTSEEETTSTTCGEESTTTSEEEEEEEESSSGGGGSTTSSTTSHHHHHH
T ss_pred HcCcceEeccce-ecccChhHHHHHHHhCcCCeeeeccccccccccccccccEEEEEcCCCChHHhcccCCCCCChhhhH
Confidence 899999999999 88889999999998732 111 124688999877764 54422 2 344555
Q ss_pred HHHHHHHHHCCCEEeecceeecCCC-CchHHHHHHHHHHHHHH
Q 006697 198 IVLDEELCKQGGARLVPLGLGDDDQ-CIEDDFTAWRELVWPEL 239 (635)
Q Consensus 198 k~ld~~L~~lGa~~v~~~g~gD~~~-~~e~~f~~W~~~l~~~L 239 (635)
..+...++-+|++.+.....++-.. ..++..++|++++-+.|
T Consensus 157 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (199)
T PF02525_consen 157 PYLRGILKFCGIKDVESFSFEGVDNPDREEALEKALERAAEHL 199 (199)
T ss_dssp HHHHHHHHHTTEEEEEEEEEESTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCceeeEEEEeCCCCCChHHHHHHHHHHHHhhC
Confidence 6678888889999987766555332 23788889988876554
No 129
>PRK13556 azoreductase; Provisional
Probab=97.96 E-value=0.00048 Score=68.78 Aligned_cols=157 Identities=9% Similarity=0.060 Sum_probs=107.3
Q ss_pred CCeEEEEEECCC----chHHHHHHHHHHHHHhhhCCceEEEEeCCCCCc-----------------------------Cc
Q 006697 83 KTKVTVFYGTQT----GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM-----------------------------DD 129 (635)
Q Consensus 83 ~~~v~I~YgSqt----Gtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~-----------------------------~~ 129 (635)
|++|+|+.+|-. +++..+++.+.+.+.+..++.+++++||.+.+. .-
T Consensus 1 m~kiL~I~~spr~~~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13556 1 MSKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFELTEEEAKAVAVA 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCHHHHHhhccccccccCCHHHHHHHHHH
Confidence 578999999964 788999999999998765578898888863211 00
Q ss_pred hHHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCC------CC--CCCCCCceEEEEEecCcch-----hHHHHH
Q 006697 130 EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGN------DR--GPWLQQLKFGVFGLGNRQY-----EHFNKI 196 (635)
Q Consensus 130 ~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~~~L~~~~------~~--~~~l~~~~~aVFGlGds~Y-----~~f~~~ 196 (635)
+.+..++...+.+||++|-| ++.+|.-.+.+++++.... .. ...++++++.|+...-..| +.+..+
T Consensus 81 ~~~~~~l~~AD~iVi~~P~y-n~~~Pa~LK~~iD~v~~~g~tf~~~~~g~~gll~~K~~~vi~tsGg~~~~~~~~~~~~~ 159 (208)
T PRK13556 81 DKYLNQFLEADKVVFAFPLW-NFTIPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKVALLNARGGVYSEGPAAEVEMA 159 (208)
T ss_pred HHHHHHHHHCCEEEEecccc-ccCCcHHHHHHHHHHhcCCceeecCCCCCccccCCCEEEEEEeCCCCCCCCCchhhhcc
Confidence 23445677889999999999 8899999999999987531 01 1358899999987733345 334444
Q ss_pred HHHHHHHHHHCCCEEeecceeecCCCCchHHHHHHHHHHHHHHHH
Q 006697 197 GIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQ 241 (635)
Q Consensus 197 ~k~ld~~L~~lGa~~v~~~g~gD~~~~~e~~f~~W~~~l~~~L~~ 241 (635)
...+...|.-+|++.+.. ...+......+..+.+.++....+.+
T Consensus 160 ~~~l~~il~~~G~~~~~~-v~~~~~~~~~~~~~~~~~~a~~~~~~ 203 (208)
T PRK13556 160 VKYVASMMGFFGVTNMET-VVIEGHNQFPDKAEEIITAGLEEAAK 203 (208)
T ss_pred HHHHHHHHHhcCCCceeE-EEEehhhcChhHHHHHHHHHHHHHHH
Confidence 567888888899876543 33322222344455665555554444
No 130
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=97.76 E-value=3.6e-05 Score=72.70 Aligned_cols=74 Identities=20% Similarity=0.292 Sum_probs=51.6
Q ss_pred cEEEEecCCCchhHHHHHHHHHHHHhc-CCCCCcEEEEEeecCCCcccccHHHHHHHHHcC--CccEEEEEEecCCC
Q 006697 545 PIIMVGPGTGLAPFRGFLQERMALKQD-GAQLGPALLFFGCRNRRMDFIYEDELNNFEEEG--VISELILAFSREGS 618 (635)
Q Consensus 545 piImIg~GTGIAPfrs~lq~r~~~~~~-g~~~~~~~LffG~R~~~~d~ly~del~~~~~~g--~~~~l~~a~SR~~~ 618 (635)
.++|||+|+||+|+.+++++.....++ .....++.|+|-+|+.+.-..|.++|+++.... ..+++.+.++++..
T Consensus 3 ~vvlvAGG~GIt~~l~~l~~l~~~~~~~~~~~~~i~lvW~vR~~~~l~w~~~~l~~l~~~~~~~~~~~~iyvT~~~~ 79 (156)
T PF08030_consen 3 NVVLVAGGSGITPILPILRDLLQRQNRGSSRTRRIKLVWVVRDADELEWFSPELNELLELDRLGNVEVHIYVTRESS 79 (156)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHHTT-----EEEEEEEES-TTTTHHHHHHHHHHHHHHHHTSEEEEEEETT---
T ss_pred EEEEEecCcCHHHHHHHHHHHHHhhccccccccceEEEEeeCchhhhhhhhHHHHHHHHHhccccceEEEEEcCCcc
Confidence 589999999999999999999876542 235679999999999985456786666554432 35678888888654
No 131
>COG0655 WrbA Multimeric flavodoxin WrbA [General function prediction only]
Probab=97.76 E-value=0.00031 Score=70.10 Aligned_cols=123 Identities=17% Similarity=0.086 Sum_probs=89.2
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCC-----------c--------Cc-hHHHhhhccCCeEEE
Q 006697 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYA-----------M--------DD-EQYEEKLKKETLAFF 144 (635)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~-----------~--------~~-~~~~~~l~~~~~vif 144 (635)
.|.+.|-| +|||+.+++.+++.+++. |++++++.+.+.+ . ++ +.+.+++.+++.+||
T Consensus 5 ~I~gs~r~-~G~t~~l~~~~~~g~~~~--G~E~~~i~v~~~~i~~c~~c~~c~~~~~c~~~dD~~~~i~~~l~~aD~iI~ 81 (207)
T COG0655 5 GINGSPRS-NGNTAKLAEAVLEGAEEA--GAEVEIIRLPEKNIKPCTGCFACWKKKPCVIKDDDMNEIYEKLLEADGIIF 81 (207)
T ss_pred EEEecCCC-CCcHHHHHHHHHHHHHHc--CCEEEEEEecCCCcccchHHHhhhccCCCCCCcccHHHHHHHHHHCCEEEE
Confidence 45666666 799999999999999998 8999988877652 1 11 235555778899999
Q ss_pred EEecCCCCCCChhHHHHHHH-HhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEe
Q 006697 145 MVATYGDGEPTDNAARFYKW-FTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (635)
Q Consensus 145 ~~sTyg~G~~p~na~~F~~~-L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v 212 (635)
++||| .|..+..++.|++. ...... ...+.++..++|..+.+.-.........+...+...|...+
T Consensus 82 gsPvy-~g~vsa~~K~fiDR~~~~~~~-~~~l~~k~~~~~~~~~~~~g~~e~~~~~~~~~~~~~~~~~v 148 (207)
T COG0655 82 GSPVY-FGNVSAQMKAFIDRSTGPLWA-PGALRGKVGAAFVSGGSRGGGQEATLLSLLLFFLHHGMIVV 148 (207)
T ss_pred eCCee-cCCchHHHHHHHhhcchhhcc-cchhccccceEEEEeccCCCChHHHHHHHHHHHHHcCCeEe
Confidence 99999 99999999999998 433221 13488999999987665433222344556666666676544
No 132
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.74 E-value=7.3e-05 Score=86.69 Aligned_cols=134 Identities=19% Similarity=0.211 Sum_probs=91.7
Q ss_pred CCChhhHHHHhcCC---CCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhh-cCC-C-CCCCC----c
Q 006697 455 TPPIGVFFAAVAPH---LQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKN-AIP-L-EGNGD----C 524 (635)
Q Consensus 455 ~~p~~~ll~~~~p~---l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~-l~~-g-~~~~~----~ 524 (635)
+..+||++-+-.|. ++..+|||+|+| +++.+.+.|+. .|-.|+-|.+ +.. . +.+.+ .
T Consensus 381 ~y~~Gqyifv~~p~ls~~qwHPFTItSsp--~dd~lsvhIk~-----------~g~wT~~L~~~~~~~~~~~~~~~~~~~ 447 (646)
T KOG0039|consen 381 KYKPGQYIFVNCPSLSKLEWHPFTITSAP--EDDFLSVHIKA-----------LGDWTEKLRNAFSEVSQPPESDKSYPF 447 (646)
T ss_pred CCCCCCEEEEECccccccccCCceeecCC--CCCEEEEEEEe-----------cCcHHHHHHHHHhhhcccccccccccC
Confidence 33567776654464 589999999999 47899999998 5777777766 331 1 11111 3
Q ss_pred cEEEEEeeCCCCcCCCCCCCcEEEEecCCCchhHHHHHHHHHHHHhcCC------------CCCcEEEEEeecCCCcccc
Q 006697 525 SWAPIFIRPSNFKLPANPSVPIIMVGPGTGLAPFRGFLQERMALKQDGA------------QLGPALLFFGCRNRRMDFI 592 (635)
Q Consensus 525 ~~v~i~~~~g~F~lp~~~~~piImIg~GTGIAPfrs~lq~r~~~~~~g~------------~~~~~~LffG~R~~~~d~l 592 (635)
-++.|.+|.|.=..+-..-..++|||+|.|++||.|.+++.....+.+. ..+++..++-||....--.
T Consensus 448 ~~i~IdGPYG~~s~d~~~~e~~vLV~~GiGvtPf~sil~~l~~~~~~~~~~~~~~~~~~~~~~~~~~F~Wv~~~~~sf~w 527 (646)
T KOG0039|consen 448 PKILIDGPYGAPSQDVFKYEVLVLVGGGIGVTPFASILKDLLNKISLGRTKAPTSDYSDSLKLKKVYFYWVTREQRSFEW 527 (646)
T ss_pred ceEEEECCCCCCchhhhhcceEEEEccCcccCccHHHHHHHHhhccCCCCcCccccccccceecceeEEEEeccccchHH
Confidence 5788999998322221223467999999999999999999986443331 3467888888998873334
Q ss_pred cHHHHHHHH
Q 006697 593 YEDELNNFE 601 (635)
Q Consensus 593 y~del~~~~ 601 (635)
+.+.+.+..
T Consensus 528 f~~~l~~v~ 536 (646)
T KOG0039|consen 528 FKGLLTEVE 536 (646)
T ss_pred HHHHHHHHH
Confidence 566655554
No 133
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=97.46 E-value=0.0073 Score=60.76 Aligned_cols=126 Identities=10% Similarity=0.048 Sum_probs=91.3
Q ss_pred CCeEEEEEECCC--chHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCc---------hHHHhhhccCCeEEEEEecCCC
Q 006697 83 KTKVTVFYGTQT--GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD---------EQYEEKLKKETLAFFMVATYGD 151 (635)
Q Consensus 83 ~~~v~I~YgSqt--Gtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~---------~~~~~~l~~~~~vif~~sTyg~ 151 (635)
.++|+++.||.. -++..+|+.+.+.+.+. |++++++|+.+++.-+ ..+...+...+.+||++|-| +
T Consensus 26 ~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~--g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~TPEY-n 102 (219)
T TIGR02690 26 IPRILLLYGSLRERSYSRLLAEEAARLLGCE--GRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCSPER-H 102 (219)
T ss_pred CCEEEEEECCCCCcchHHHHHHHHHHHHhhc--CCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeCCcc-c
Confidence 678999999874 34578999999999877 7889999876544211 11334456789999999999 8
Q ss_pred CCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEee
Q 006697 152 GEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (635)
Q Consensus 152 G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~ 213 (635)
|..|...+.+++|+.....+...+.+|.++|+|.+-... --.+...+...|..+|+..+-
T Consensus 103 ~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaSgg~~--g~ra~~~LR~vl~~l~a~v~p 162 (219)
T TIGR02690 103 GAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVSGGSQ--SFNAVNILRRLGRWMRMPTIP 162 (219)
T ss_pred cCcCHHHHHHHHhcccCcccccccCCCcEEEEEeCCcHh--HHHHHHHHHHHHHHCCCcccc
Confidence 889999999999997642111248899999998531111 223556788888889987553
No 134
>PRK13555 azoreductase; Provisional
Probab=97.11 E-value=0.036 Score=55.41 Aligned_cols=128 Identities=11% Similarity=0.127 Sum_probs=90.6
Q ss_pred CCeEEEEEECCC----chHHHHHHHHHHHHHhhhCCceEEEEeCCCCCc--------------------Cc---------
Q 006697 83 KTKVTVFYGTQT----GTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM--------------------DD--------- 129 (635)
Q Consensus 83 ~~~v~I~YgSqt----Gtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~--------------------~~--------- 129 (635)
|++++++++|=. ..+..+|+.+.++++++.++.++.+.||-+-+. ..
T Consensus 1 M~kiL~I~asp~~~~~S~s~~la~~f~~~~~~~~p~~~V~~~DL~~~~~p~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 80 (208)
T PRK13555 1 MSKVLFVKANDRPAEQAVSSKMYETFVSTYKEANPNTEITELDLFALDLPYYGNIAISGGYKRSQGMELTAEEEKAVATV 80 (208)
T ss_pred CCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhccCCCcccCCHHHHHHHHHH
Confidence 468999999943 568889999999998875457888888754211 00
Q ss_pred hHHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCC------C--CCCCCCCceEEEEEecCcchh-----HHHHH
Q 006697 130 EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGN------D--RGPWLQQLKFGVFGLGNRQYE-----HFNKI 196 (635)
Q Consensus 130 ~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~~~L~~~~------~--~~~~l~~~~~aVFGlGds~Y~-----~f~~~ 196 (635)
+.+..++...+.+||++|-| ++.+|.-.+.|++++.... . ....|++++..|++.....|. .....
T Consensus 81 ~~~~~~~~~AD~lvi~~P~~-n~~~Pa~LK~~iD~v~~~G~tF~~~~~~~~gll~~k~~~vi~~~gg~~~~~~~~~~~~~ 159 (208)
T PRK13555 81 DQYLNQFLEADKVVFAFPLW-NFTVPAPLITYISYLSQAGKTFKYTANGPEGLAGGKKVVVLGARGSDYSSEQMAPMEMA 159 (208)
T ss_pred HHHHHHHHHcCEEEEEcCcc-cccchHHHHHHHHHHhcCCceeecCCCCCccccCCCeEEEEEcCCCCCCCCCchhhhhH
Confidence 12445677889999999999 8888999999999986421 1 124589999999987333452 12223
Q ss_pred HHHHHHHHHHCCCEE
Q 006697 197 GIVLDEELCKQGGAR 211 (635)
Q Consensus 197 ~k~ld~~L~~lGa~~ 211 (635)
...+...|.-+|.+.
T Consensus 160 ~~yl~~il~~~Gi~~ 174 (208)
T PRK13555 160 VNYVTTVLGFWGITN 174 (208)
T ss_pred HHHHHHHHHhcCCCc
Confidence 356777787788864
No 135
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=97.06 E-value=0.047 Score=53.52 Aligned_cols=158 Identities=13% Similarity=0.063 Sum_probs=98.7
Q ss_pred cCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCC----cCchHHHhhhccCCeEEEEEecCCCCCCCh
Q 006697 81 AGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYA----MDDEQYEEKLKKETLAFFMVATYGDGEPTD 156 (635)
Q Consensus 81 ~~~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~----~~~~~~~~~l~~~~~vif~~sTyg~G~~p~ 156 (635)
+.+++++|++++-....-. +++...++.+. ...+.+.||...- .+-......+...+.+||..|.| ...+|.
T Consensus 3 ~~~~kiLiI~aHP~~~~S~-~n~~l~~~~~~--~~~v~~~DL~~~~p~~~~d~~~eq~~l~~aD~iV~~fPl~-w~~~Pa 78 (184)
T PRK04930 3 SQPPKVLLLYAHPESQDSV-ANRVLLKPAQQ--LEHVTVHDLYAHYPDFFIDIPHEQALLREHDVIVFQHPLY-TYSCPA 78 (184)
T ss_pred CCCCEEEEEECCCCcccCH-HHHHHHHHHHc--CCceEEEECcccCCCCCCCHHHHHHHHHhCCEEEEEcCcc-ccCCcH
Confidence 4578999999999865322 33333333333 3457788875431 22222344577899999999999 777788
Q ss_pred hHHHHHHHHhcCCC----CCCCCCCceEEEEEe-cCcc--hh--HHHH-----HHHHHHHHHHHCCCEEeecceeecCCC
Q 006697 157 NAARFYKWFTEGND----RGPWLQQLKFGVFGL-GNRQ--YE--HFNK-----IGIVLDEELCKQGGARLVPLGLGDDDQ 222 (635)
Q Consensus 157 na~~F~~~L~~~~~----~~~~l~~~~~aVFGl-Gds~--Y~--~f~~-----~~k~ld~~L~~lGa~~v~~~g~gD~~~ 222 (635)
-.+.+++..-.... .+..|+|+++.+.-. |... |. .+++ .-.-+...+.-+|.+.+.+....+...
T Consensus 79 ~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~ll~p~~~~~~~~Gm~~~~~~~~~~~~~ 158 (184)
T PRK04930 79 LLKEWLDRVLSRGFASGPGGNALAGKYWRSVITTGEPESAYRYDGYNRYPMSDILRPFELTAAMCRMHWLSPIIIYWARR 158 (184)
T ss_pred HHHHHHHHHHhcCcccCCCCCccCCCEEEEEEECCCChHHhCccCcCCCCHHHHHHHHHHHHHHcCCeEcCcEEEecCCC
Confidence 88888887643211 124589999887644 4433 42 2221 122223334456998887777666655
Q ss_pred CchHHHHHHHHHHHHHHHHh
Q 006697 223 CIEDDFTAWRELVWPELDQL 242 (635)
Q Consensus 223 ~~e~~f~~W~~~l~~~L~~~ 242 (635)
..+++.++|.++..+.|.+.
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~ 178 (184)
T PRK04930 159 QSPEELASHARAYGDWLANP 178 (184)
T ss_pred CCHHHHHHHHHHHHHHHhhh
Confidence 66778888888777766653
No 136
>KOG3135 consensus 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein [General function prediction only]
Probab=96.66 E-value=0.022 Score=53.87 Aligned_cols=129 Identities=17% Similarity=0.134 Sum_probs=87.4
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHH-----------------HhhhccCCeEEEEE
Q 006697 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQY-----------------EEKLKKETLAFFMV 146 (635)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~-----------------~~~l~~~~~vif~~ 146 (635)
.+|.|+|-|.+|.-+.+|+.+.+.+.+. +-+..++.+.+.-.++ + .+.|.+++.++|+.
T Consensus 2 ~kv~iv~ys~yghv~~lAe~~kkGie~a--~geA~i~qVpEtl~~e--vl~km~a~pkp~d~piit~~~L~e~D~flFG~ 77 (203)
T KOG3135|consen 2 PKVAIVIYSTYGHVAKLAEAEKKGIESA--GGEATIYQVPETLSEE--VLEKMKAPPKPSDYPIITPETLTEYDGFLFGF 77 (203)
T ss_pred ceEEEEEEEcccHHHHHHHHHHhhhhcc--CCeeEEEEcccccCHH--HHHHhcCCCCCccCCccCHHHHhhccceeecc
Confidence 5799999999999999999999999876 3367777554332211 2 23366789999999
Q ss_pred ecCCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecceeec
Q 006697 147 ATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGD 219 (635)
Q Consensus 147 sTyg~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~gD 219 (635)
||- -|.+|..++.||+.-..+ -....|.|+..++|=.+.+.=+-=-..+..--..|.-.|. .++|+|.-+
T Consensus 78 PTR-fG~~~AQ~kaF~D~TggL-W~~~aL~GK~AG~F~Stgs~gGgqE~talta~t~LvHHGm-ifVPlGYkn 147 (203)
T KOG3135|consen 78 PTR-FGNMPAQWKAFWDSTGGL-WAKGALAGKPAGIFVSTGSQGGGQETTALTAITQLVHHGM-IFVPLGYKN 147 (203)
T ss_pred ccc-ccCcHHHHHHHHhccCch-hhhccccCCceeEEEeccCCCCchHhHHHHHHHHHHhcce-EEEecccch
Confidence 999 999999999999863221 1112389999999987653321111112222235555665 567888653
No 137
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=95.76 E-value=0.1 Score=51.03 Aligned_cols=122 Identities=16% Similarity=0.146 Sum_probs=84.2
Q ss_pred CeEEEEEECCCc--hHHHHHHHHHHHHHhhhCC-ceEEEEeCC----CCC------cC-chHHHhhhccCCeEEEEEecC
Q 006697 84 TKVTVFYGTQTG--TAEGFAKALAEEIKARYEK-AAVKVVDLD----DYA------MD-DEQYEEKLKKETLAFFMVATY 149 (635)
Q Consensus 84 ~~v~I~YgSqtG--tte~~A~~l~~~l~~~~~g-~~~~v~dl~----~~~------~~-~~~~~~~l~~~~~vif~~sTy 149 (635)
+||++++||..= .+..+|+.+.+.+... + ..+...+++ +.+ .+ -..+...+...+.+||++|.|
T Consensus 1 ~kil~i~GS~r~~S~~~~la~~~~~~l~~~--~~~~~~~~~~~lP~~~~d~~~~~~p~~v~~~~~~i~~aD~li~~tPeY 78 (184)
T COG0431 1 MKILIISGSLRRGSFNRALAEAAAKLLPAG--GEVEVEFDDLDLPLYNEDLEADGLPPAVQALREAIAAADGLIIATPEY 78 (184)
T ss_pred CeEEEEeccCcccchHHHHHHHHHHhhccc--CceEEEecccccCCCCcchhhccCCHHHHHHHHHHHhCCEEEEECCcc
Confidence 589999999764 4678888888888765 3 323322321 111 11 112344566789999999999
Q ss_pred CCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeec
Q 006697 150 GDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (635)
Q Consensus 150 g~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~ 214 (635)
+|..|.-.+..++|+.... +.++.+++++.|.... +.-.+...+...|..+|+..+..
T Consensus 79 -n~s~pg~lKnaiD~l~~~~-----~~~Kpv~~~~~s~g~~-~~~~a~~~Lr~vl~~~~~~~~~~ 136 (184)
T COG0431 79 -NGSYPGALKNAIDWLSREA-----LGGKPVLLLGTSGGGA-GGLRAQNQLRPVLSFLGARVIPA 136 (184)
T ss_pred -CCCCCHHHHHHHHhCCHhH-----hCCCcEEEEecCCCch-hHHHHHHHHHHHHHhcCceeccc
Confidence 9999999999999997653 8899999888643332 22335567778888888876543
No 138
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=95.43 E-value=0.41 Score=46.62 Aligned_cols=152 Identities=14% Similarity=0.103 Sum_probs=92.2
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCc----CchHHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 006697 86 VTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM----DDEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (635)
Q Consensus 86 v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~----~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F 161 (635)
|+|+++.-......+-+.|.+.+... + .+++.||.+..+ +-......+...+.+||..|-| ...+|.-.+.+
T Consensus 2 iLvi~aHP~~~~S~~n~al~~~~~~~-~--~v~v~dL~~~~p~~~~dv~~eq~~l~~aD~iV~~fP~~-w~~~Pa~lK~w 77 (176)
T PRK00871 2 ILIIYAHPYPHHSHANKRMLEQARTL-E--GVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQ-WYSIPPLLKLW 77 (176)
T ss_pred EEEEEcCCCCccChHHHHHHHHHHhc-C--CeEEEEChhhcCCcchhHHHHHHHHHhCCEEEEEcChh-hccccHHHHHH
Confidence 78999988876556677777776643 2 377777654222 1112344477899999999999 77788888888
Q ss_pred HHHHhcCC----CCCCCCCCceE-EEEEecCc--chh-----HHHHHHHHHHHHHHHCCCEEeecceeecCCCCchHHHH
Q 006697 162 YKWFTEGN----DRGPWLQQLKF-GVFGLGNR--QYE-----HFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFT 229 (635)
Q Consensus 162 ~~~L~~~~----~~~~~l~~~~~-aVFGlGds--~Y~-----~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~~~e~~f~ 229 (635)
++..-... ..+..|+|+++ .++..|.. .|. .+...-.-+...+.-+|++.+.+..........+++++
T Consensus 78 iD~V~~~g~ay~~~g~~l~gk~~~~~~t~G~~~~~y~~~g~~~~~~ll~pl~~~~~~~G~~~l~~~~~~~~~~~~~~~~~ 157 (176)
T PRK00871 78 IDKVLSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATALYCGLNWLPPFAMHCTFICDDETLE 157 (176)
T ss_pred HHHHhhCCccccCCCCCcCCCEEEEEEeCCCCHHHHCCCCcCCchHHHHHHHHHHHHcCCeEcceEEEeeeccCCHHHHH
Confidence 87653311 11245889977 45555654 231 12223344555566689987766654433333345555
Q ss_pred HHHHHHHHHHHH
Q 006697 230 AWRELVWPELDQ 241 (635)
Q Consensus 230 ~W~~~l~~~L~~ 241 (635)
+..++..+.|.+
T Consensus 158 ~~~~~~~~~L~~ 169 (176)
T PRK00871 158 GQARHYKQRLLE 169 (176)
T ss_pred HHHHHHHHHHHh
Confidence 555555444443
No 139
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=93.69 E-value=1.4 Score=43.33 Aligned_cols=156 Identities=16% Similarity=0.123 Sum_probs=98.1
Q ss_pred CeEEEEEECCC-chHHHHHHHHHHHHHhhhCCceEEEEe-----------CCC--CCcCchHHHhhhccCCeEEEEEecC
Q 006697 84 TKVTVFYGTQT-GTAEGFAKALAEEIKARYEKAAVKVVD-----------LDD--YAMDDEQYEEKLKKETLAFFMVATY 149 (635)
Q Consensus 84 ~~v~I~YgSqt-Gtte~~A~~l~~~l~~~~~g~~~~v~d-----------l~~--~~~~~~~~~~~l~~~~~vif~~sTy 149 (635)
|+|+|+||--- .-+...++.+.+.+.++ ++++...| ..| +..+-..-.+.+...+.+||.-|-|
T Consensus 1 mkiLii~aHP~~sf~~~~~~~~~~~~n~~--~~~v~~~dl~~~~fd~~~~~~d~~~~~Dv~~E~e~l~~AD~ivlqfPlw 78 (189)
T COG2249 1 MKILIIYAHPNESFTHALSDAALERLNEA--GHEVALKDLYALGFDPYLTYPDGEFPIDVKAEQEKLLWADVIVLQFPLW 78 (189)
T ss_pred CcEEEEEeCchhhhhHHHHHHHHHHHHHc--chHHHhhhhhhhcCCceeecCccCCCCCHHHHHHHHHhcceEEEEcCch
Confidence 68999999985 44455555555555554 44332221 122 2222222345577889999999999
Q ss_pred CCCCCChhHHHHHHHHhcCCC----CC----CCCCCceEEEEEecCcchhHHHHHHH---------HHHHHHHHCCCEEe
Q 006697 150 GDGEPTDNAARFYKWFTEGND----RG----PWLQQLKFGVFGLGNRQYEHFNKIGI---------VLDEELCKQGGARL 212 (635)
Q Consensus 150 g~G~~p~na~~F~~~L~~~~~----~~----~~l~~~~~aVFGlGds~Y~~f~~~~k---------~ld~~L~~lGa~~v 212 (635)
=...|.-.+.+++..-..-. .+ ..|+|+++-++..-+..=+.|...+. .+.-.+.-+|...+
T Consensus 79 -W~~~PaiLKg~iDrV~~~Gfay~~~~~~~~~~L~gK~~~~~~T~G~~~~~y~~~g~~~~~~~~~~~~~~~~~~~g~~~~ 157 (189)
T COG2249 79 -WYSMPALLKGWIDRVFTPGFAYGAGGYGSGGLLQGKKAMLVVTTGAPEEAYREGGGNFFEGVLLDPLYGTFHYCGLGWL 157 (189)
T ss_pred -hccCcHHHHHHHHHHhcCCcccccCCcccccccCCcEEEEEEecCCCHHHHhhcccCcccccccchhHHHHHHcCCccc
Confidence 77778888888887643211 11 56999999888874443233433322 22244556687777
Q ss_pred ecceeecCCCCchHHHHHHHHHHHHHHHHh
Q 006697 213 VPLGLGDDDQCIEDDFTAWRELVWPELDQL 242 (635)
Q Consensus 213 ~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 242 (635)
-+...+......++....|.+++-..|.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 187 (189)
T COG2249 158 PPFTFYGADVIDDETRAAYLERYRAHLKEI 187 (189)
T ss_pred cceeEeecccCCHHHHHHHHHHHHHHHHhh
Confidence 666666655567899999998887777653
No 140
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=92.40 E-value=0.5 Score=48.72 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=65.0
Q ss_pred CCCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEeeCCCCcCCCCCCCcE
Q 006697 467 PHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLPANPSVPI 546 (635)
Q Consensus 467 p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~g~F~lp~~~~~pi 546 (635)
.+...|.|+|.+-.. ..-+|.|..|-+.. .|.+|.|-.+.++| |+|.|.+|.|.+..+.. ..-+
T Consensus 83 ~r~~~R~YTiR~~d~---~~~e~~vDfVlH~~------~gpas~WA~~a~~G------D~l~i~GP~g~~~p~~~-~~~~ 146 (265)
T COG2375 83 QRPPQRTYTIRAVDA---AAGELDVDFVLHGE------GGPASRWARTAQPG------DTLTIMGPRGSLVPPEA-ADWY 146 (265)
T ss_pred cCCCcccceeeeecc---cccEEEEEEEEcCC------CCcchhhHhhCCCC------CEEEEeCCCCCCCCCCC-cceE
Confidence 445689999986542 33455555554322 69999999999999 99999999998776643 4579
Q ss_pred EEEecCCCchhHHHHHHHHH
Q 006697 547 IMVGPGTGLAPFRGFLQERM 566 (635)
Q Consensus 547 ImIg~GTGIAPfrs~lq~r~ 566 (635)
+|||==|++--+.++|++.-
T Consensus 147 lLigDetAlPAIa~iLE~lp 166 (265)
T COG2375 147 LLIGDETALPAIARILETLP 166 (265)
T ss_pred EEeccccchHHHHHHHHhCC
Confidence 99999999999999998864
No 141
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=90.56 E-value=6.1 Score=36.81 Aligned_cols=128 Identities=13% Similarity=0.164 Sum_probs=79.5
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCC-CCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHHH
Q 006697 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDD-YAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (635)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~-~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~~ 163 (635)
+-.|+-++.-|..-.+...+...+-+.. | .+++++-. ...++ +.....+.+.=+++.|.. .+..-..+.++.+
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~-G--~eVi~LG~~vp~e~--i~~~a~~~~~d~V~lS~~-~~~~~~~~~~~~~ 76 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEA-G--FEVINLGVMTSQEE--FIDAAIETDADAILVSSL-YGHGEIDCRGLRE 76 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHC-C--CEEEECCCCCCHHH--HHHHHHHcCCCEEEEcCc-cccCHHHHHHHHH
Confidence 4457778999999888888777765444 4 66777763 44444 666666666544444444 3344466777888
Q ss_pred HHhcCCCCCCCCCCceEEEEEe---cCcchhHHHHHHHHHHHHHHHCCCEEeecceeecCCCCchHHHHHHHHHHH
Q 006697 164 WFTEGNDRGPWLQQLKFGVFGL---GNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVW 236 (635)
Q Consensus 164 ~L~~~~~~~~~l~~~~~aVFGl---Gds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~~~e~~f~~W~~~l~ 236 (635)
.|++.. +.+.++.+=|. +++.+ ....++|+++|...+++.+. ..++...|....|
T Consensus 77 ~L~~~~-----~~~~~i~vGG~~~~~~~~~-------~~~~~~l~~~G~~~vf~~~~------~~~~i~~~l~~~~ 134 (137)
T PRK02261 77 KCIEAG-----LGDILLYVGGNLVVGKHDF-------EEVEKKFKEMGFDRVFPPGT------DPEEAIDDLKKDL 134 (137)
T ss_pred HHHhcC-----CCCCeEEEECCCCCCccCh-------HHHHHHHHHcCCCEEECcCC------CHHHHHHHHHHHh
Confidence 887653 44555544442 22223 45667899999988886553 3456666665443
No 142
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=87.75 E-value=0.22 Score=54.52 Aligned_cols=61 Identities=30% Similarity=0.537 Sum_probs=54.4
Q ss_pred EEEecCcch------hHHHHHHHHHHHHHHHCCCEEeecceeecCCC--CchHHHHHHHHHHHHHHHHh
Q 006697 182 VFGLGNRQY------EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ--CIEDDFTAWRELVWPELDQL 242 (635)
Q Consensus 182 VFGlGds~Y------~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~--~~e~~f~~W~~~l~~~L~~~ 242 (635)
|||+||+-| ..|++-.|.+..+|.+++|....++|+|+|++ .....+..|--.||++|..-
T Consensus 1 vfgfs~tf~~Pk~~~~~ftkp~k~~l~r~~~l~a~a~vtlglg~d~d~~~p~ta~s~~~p~l~eal~~~ 69 (638)
T KOG0560|consen 1 VFGFSDTFYWPKEDKSYFTKPKKSLLVRLAQLTAPALVTLGLGVDQDPDGPRTAYSDWEPILWEALGKG 69 (638)
T ss_pred CccccccccCcccCccccCCchHHHHHHHHHhcCCceeeeccCCCCCCCCccccccccChHHHHHhcCC
Confidence 689999988 36899999999999999999999999999887 67888999999999999763
No 143
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=87.35 E-value=0.38 Score=43.57 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=29.8
Q ss_pred CCCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEeeCCCC
Q 006697 467 PHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNF 536 (635)
Q Consensus 467 p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~g~F 536 (635)
++...|.|||.+.... .+++.|-+.+. .. .|.+|.|..+.++| |.|.|.+|.|.|
T Consensus 63 ~~p~~R~YTvR~~d~~-~~~l~iDfv~H--g~------~Gpas~WA~~A~pG------d~v~v~gP~g~~ 117 (117)
T PF08021_consen 63 QRPVMRTYTVRRFDPE-TGELDIDFVLH--GD------EGPASRWARSARPG------DRVGVTGPRGSF 117 (117)
T ss_dssp ---EEEEEE--EEETT---EEEEEEE----SS--------HHHHHHHH--TT-------EEEEEEEE---
T ss_pred CCCCCCCcCEeeEcCC-CCEEEEEEEEC--CC------CCchHHHHhhCCCC------CEEEEeCCCCCC
Confidence 3346799999987533 34555555442 11 38999999999999 999999999877
No 144
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=87.34 E-value=10 Score=35.19 Aligned_cols=127 Identities=13% Similarity=0.091 Sum_probs=81.7
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCC-CCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHH
Q 006697 87 TVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDD-YAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWF 165 (635)
Q Consensus 87 ~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~-~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~~~L 165 (635)
+|+-|+--|..-.....+-..+-+.. | .+++|+-- ..++ ++++...+++.=+++.|+. .|.--..+.++.+.|
T Consensus 3 ~vvigtv~~D~HdiGk~iv~~~l~~~-G--feVi~LG~~v~~e--~~v~aa~~~~adiVglS~l-~~~~~~~~~~~~~~l 76 (134)
T TIGR01501 3 TIVLGVIGSDCHAVGNKILDHAFTNA-G--FNVVNLGVLSPQE--EFIKAAIETKADAILVSSL-YGHGEIDCKGLRQKC 76 (134)
T ss_pred eEEEEEecCChhhHhHHHHHHHHHHC-C--CEEEECCCCCCHH--HHHHHHHHcCCCEEEEecc-cccCHHHHHHHHHHH
Confidence 46668888888888887766654444 4 67788853 3443 3777777888877777777 555556788888888
Q ss_pred hcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecceeecCCCCchHHHHHHHHH
Q 006697 166 TEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWREL 234 (635)
Q Consensus 166 ~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~~~e~~f~~W~~~ 234 (635)
++.. +.++. .++| |.-....= -...+.++|+++|..++++.+. ..+++..|..+
T Consensus 77 ~~~g-----l~~~~-vivG-G~~vi~~~--d~~~~~~~l~~~Gv~~vF~pgt------~~~~iv~~l~~ 130 (134)
T TIGR01501 77 DEAG-----LEGIL-LYVG-GNLVVGKQ--DFPDVEKRFKEMGFDRVFAPGT------PPEVVIADLKK 130 (134)
T ss_pred HHCC-----CCCCE-EEec-CCcCcChh--hhHHHHHHHHHcCCCEEECcCC------CHHHHHHHHHH
Confidence 7754 55544 4555 43222100 0123556899999999887553 34666666543
No 145
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=86.32 E-value=0.12 Score=45.67 Aligned_cols=78 Identities=17% Similarity=0.159 Sum_probs=4.0
Q ss_pred HHHHHHhCCC--CCCChhhHHHHhcCCC-----CccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcC
Q 006697 444 LLEVMAEFPS--ATPPIGVFFAAVAPHL-----QPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAI 516 (635)
Q Consensus 444 l~dvl~~f~s--~~~p~~~ll~~~~p~l-----~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~ 516 (635)
+++|....|. .+..+||++-+.+|.+ +.++|||+|+|. .+.+.|+|+. .|-.|.-|.+..
T Consensus 16 ~v~i~i~~~~~~~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~--~~~i~l~ik~-----------~g~~T~~L~~~~ 82 (105)
T PF08022_consen 16 VVEITIPKPSSPFKWKPGQYVFLSFPSISKWFWQWHPFTIASSPE--DNSITLIIKA-----------RGGWTKRLYEHL 82 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEECCCCCCCCCCceEEEEEEcCcCcCcccccccEeeccCC--CCEEEEEEEe-----------CCCchHHHHHHH
Confidence 3344344443 3567888888776753 678999999987 5889999987 466677776642
Q ss_pred CC--CCCCCccEEEEEeeCC
Q 006697 517 PL--EGNGDCSWAPIFIRPS 534 (635)
Q Consensus 517 ~g--~~~~~~~~v~i~~~~g 534 (635)
.. .......++.|.||+|
T Consensus 83 ~~~~~~~~~~~~v~idGPYG 102 (105)
T PF08022_consen 83 SESPSKQGNRLRVFIDGPYG 102 (105)
T ss_dssp --------------TTSTTS
T ss_pred hhhcccCCCceEEEEECCCC
Confidence 11 0011123555666766
No 146
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=84.88 E-value=9.2 Score=35.27 Aligned_cols=114 Identities=11% Similarity=0.142 Sum_probs=73.0
Q ss_pred EEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCC-CCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHh
Q 006697 88 VFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDD-YAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFT 166 (635)
Q Consensus 88 I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~-~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~~~L~ 166 (635)
|+-|+.-|..-.+.+.|-..+-+..| .+++|+-- ...+ ++.+...+++.-+++.|+. .|.--..+.+..+.|+
T Consensus 2 vvigtv~gD~HdiGkniv~~~L~~~G---feVidLG~~v~~e--~~v~aa~~~~adiVglS~L-~t~~~~~~~~~~~~l~ 75 (128)
T cd02072 2 IVLGVIGSDCHAVGNKILDHAFTEAG---FNVVNLGVLSPQE--EFIDAAIETDADAILVSSL-YGHGEIDCKGLREKCD 75 (128)
T ss_pred EEEEEeCCchhHHHHHHHHHHHHHCC---CEEEECCCCCCHH--HHHHHHHHcCCCEEEEecc-ccCCHHHHHHHHHHHH
Confidence 66778888888888877776654444 67788853 3333 3777777777767777776 5555577888888887
Q ss_pred cCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecce
Q 006697 167 EGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 216 (635)
Q Consensus 167 ~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g 216 (635)
+.. +...+ |+.=|.-.-+ ..-.....++|+++|..++++.|
T Consensus 76 ~~g-----l~~v~--vivGG~~~i~--~~d~~~~~~~L~~~Gv~~vf~pg 116 (128)
T cd02072 76 EAG-----LKDIL--LYVGGNLVVG--KQDFEDVEKRFKEMGFDRVFAPG 116 (128)
T ss_pred HCC-----CCCCe--EEEECCCCCC--hhhhHHHHHHHHHcCCCEEECcC
Confidence 754 44433 3333432110 00012345689999999998766
No 147
>PRK05907 hypothetical protein; Provisional
Probab=66.61 E-value=1.2e+02 Score=32.22 Aligned_cols=132 Identities=11% Similarity=0.025 Sum_probs=71.8
Q ss_pred HHHhcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhh-----ccC-CeEEEEEecCC
Q 006697 77 ADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKL-----KKE-TLAFFMVATYG 150 (635)
Q Consensus 77 ~~~~~~~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l-----~~~-~~vif~~sTyg 150 (635)
..+.++. .++++||++. +...++|.+.+-.. + ...+|.++++.+. ++... ..+ ++|++--+
T Consensus 12 ~~~~~~~-~~y~~~g~~~---~~~~~~l~~~~~~~--~--~~~fdg~~~~~~~--ii~~aetlPfFaerRlV~v~~~--- 78 (311)
T PRK05907 12 QYYEEKR-PAVIVIGSSS---EEDKDIFIELLVSG--R--KSEFDGQGLLQQE--LLSWTEHFGLFASQETIGIYQA--- 78 (311)
T ss_pred HHHhcCC-ceEEEecCCc---HHHHHHHHHHhCCC--c--cceecCCCCCHHH--HHHHHhcCCcccCeEEEEEecc---
Confidence 3344444 8999999999 77777776665322 2 2446788777654 43332 233 34443222
Q ss_pred CCCCC-hhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecceeecCCCCchHHHH
Q 006697 151 DGEPT-DNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFT 229 (635)
Q Consensus 151 ~G~~p-~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~~~e~~f~ 229 (635)
+.+. .+...+.+++.+.. .....-||.. .++|+.+.-|.+.+ |+ .+...++. ..-.+.++.
T Consensus 79 -~~~~~~~~~~L~~Yl~np~------~~~~liv~~~---~~d~~kkl~K~i~k-----~~-~v~~~~e~--~~l~e~~L~ 140 (311)
T PRK05907 79 -EKMSSSTQEFLIRYARNPN------PHLTLFLFTT---KQECFSSLSKKLSS-----AL-CLSLFGEW--FADRDKRIA 140 (311)
T ss_pred -cccccccHHHHHHHHhCCC------CCeEEEEEEe---cccHHHHHHHHHhh-----cc-eecccccc--CCCCHHHHH
Confidence 2222 35677888887732 2234444654 27777766555542 32 12000111 123468899
Q ss_pred HHHHHHHHHH
Q 006697 230 AWRELVWPEL 239 (635)
Q Consensus 230 ~W~~~l~~~L 239 (635)
.|..+.....
T Consensus 141 ~Wi~~~~~~~ 150 (311)
T PRK05907 141 QLLIQRAKEL 150 (311)
T ss_pred HHHHHHHHHc
Confidence 9987665443
No 148
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=63.75 E-value=26 Score=34.87 Aligned_cols=75 Identities=28% Similarity=0.387 Sum_probs=42.5
Q ss_pred eEEEEEECCCc----hHHHHHHHHHHHHHhhhCCceEEEE-eCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHH
Q 006697 85 KVTVFYGTQTG----TAEGFAKALAEEIKARYEKAAVKVV-DLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAA 159 (635)
Q Consensus 85 ~v~I~YgSqtG----tte~~A~~l~~~l~~~~~g~~~~v~-dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~ 159 (635)
||+|+++.-+| ..+...+.|++.|++. +++++.+. |.+.+..++ |..++++||.... ++--.++..+
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~-~~~~v~~~~~~~~~~~~~------L~~~Dvvv~~~~~-~~~l~~~~~~ 72 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEES-EGFEVTVTEDPDDLTPEN------LKGYDVVVFYNTG-GDELTDEQRA 72 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHT-TCEEEEECCSGGCTSHHC------HCT-SEEEEE-SS-CCGS-HHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccC-CCEEEEEEeCcccCChhH------hcCCCEEEEECCC-CCcCCHHHHH
Confidence 68899888433 2335666666666622 16666654 344454444 8889988877665 2223444566
Q ss_pred HHHHHHhc
Q 006697 160 RFYKWFTE 167 (635)
Q Consensus 160 ~F~~~L~~ 167 (635)
.|.+++++
T Consensus 73 al~~~v~~ 80 (217)
T PF06283_consen 73 ALRDYVEN 80 (217)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 77778765
No 149
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=62.86 E-value=9 Score=36.72 Aligned_cols=57 Identities=21% Similarity=0.272 Sum_probs=41.7
Q ss_pred CCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecceeecCCCCchHHHHHH
Q 006697 175 LQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 231 (635)
Q Consensus 175 l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~~~e~~f~~W 231 (635)
+...+++|+-.||+....++..+..+..+|++.|++...-....|+.+.+.+.+++|
T Consensus 2 ~~~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~ 58 (163)
T TIGR02667 2 FIPLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAW 58 (163)
T ss_pred CCccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHH
Confidence 567899999999999877888899999999999997554333334433444444444
No 150
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=62.43 E-value=29 Score=33.41 Aligned_cols=115 Identities=15% Similarity=0.166 Sum_probs=56.1
Q ss_pred chHHHHhcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEE-eCCCCCc-CchHHHhhhccC--CeEEEEEecC
Q 006697 74 DDEADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV-DLDDYAM-DDEQYEEKLKKE--TLAFFMVATY 149 (635)
Q Consensus 74 ~~~~~~~~~~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~-dl~~~~~-~~~~~~~~l~~~--~~vif~~sTy 149 (635)
...+...++..+|.++ |.++..++++++.++++|+++++.-+ +. -+.. ++..++..+... ++|++++.
T Consensus 37 ~ll~~~~~~~~~v~ll-----G~~~~~~~~~~~~l~~~yp~l~i~g~~~g-~~~~~~~~~i~~~I~~~~pdiv~vglG-- 108 (171)
T cd06533 37 ALLELAAQKGLRVFLL-----GAKPEVLEKAAERLRARYPGLKIVGYHHG-YFGPEEEEEIIERINASGADILFVGLG-- 108 (171)
T ss_pred HHHHHHHHcCCeEEEE-----CCCHHHHHHHHHHHHHHCCCcEEEEecCC-CCChhhHHHHHHHHHHcCCCEEEEECC--
Confidence 3344444456676666 66666677777777777887664332 11 1111 112244555543 45555433
Q ss_pred CCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCE
Q 006697 150 GDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGA 210 (635)
Q Consensus 150 g~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~ 210 (635)
.|- =+.|....++. + -.-.+||+|.+ ++.+.+..+.-=+++.++|.+
T Consensus 109 ---~Pk--QE~~~~~~~~~------l--~~~v~~~vG~~-~d~~aG~~~raP~w~~~~glE 155 (171)
T cd06533 109 ---APK--QELWIARHKDR------L--PVPVAIGVGGS-FDFLAGTVKRAPKWMQKLGLE 155 (171)
T ss_pred ---CCH--HHHHHHHHHHH------C--CCCEEEEecee-eEeccCCcccCcHHHHHhCch
Confidence 322 23455554442 2 13445666654 344444444444555555543
No 151
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=62.13 E-value=65 Score=29.74 Aligned_cols=111 Identities=12% Similarity=-0.000 Sum_probs=69.1
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHH
Q 006697 86 VTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWF 165 (635)
Q Consensus 86 v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~~~L 165 (635)
+.|+-++.-|...+....|...+-+.. | .+++++.-+... +++.....+++.=+++.|+. .+.-.+.+....+.|
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~-G--feVi~lg~~~s~-e~~v~aa~e~~adii~iSsl-~~~~~~~~~~~~~~L 77 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADL-G--FDVDVGPLFQTP-EEIARQAVEADVHVVGVSSL-AGGHLTLVPALRKEL 77 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhC-C--cEEEECCCCCCH-HHHHHHHHHcCCCEEEEcCc-hhhhHHHHHHHHHHH
Confidence 457777888888888877777765443 4 667777644322 23666666666655555555 455556788888888
Q ss_pred hcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecce
Q 006697 166 TEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 216 (635)
Q Consensus 166 ~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g 216 (635)
+... +...+ |+.=|.-- +.-.+.|+++|..+++..|
T Consensus 78 ~~~g-----~~~i~--vivGG~~~--------~~~~~~l~~~Gvd~~~~~g 113 (132)
T TIGR00640 78 DKLG-----RPDIL--VVVGGVIP--------PQDFDELKEMGVAEIFGPG 113 (132)
T ss_pred HhcC-----CCCCE--EEEeCCCC--------hHhHHHHHHCCCCEEECCC
Confidence 7643 33333 33333222 2223458899999988766
No 152
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=61.77 E-value=32 Score=35.12 Aligned_cols=93 Identities=19% Similarity=0.059 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhhhCCceEEEEeCCCCCcC--chHHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCCCCCCCCC
Q 006697 99 GFAKALAEEIKARYEKAAVKVVDLDDYAMD--DEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQ 176 (635)
Q Consensus 99 ~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~--~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~~~L~~~~~~~~~l~ 176 (635)
.-|..+++.+... |..+-.+.+=++... -...+..+..++.++|-|+.- ..-|++.+.....+ +++
T Consensus 11 ~~~~~~~~~l~~~--G~~~~~~P~i~~~~~~~l~~~l~~l~~~d~vvfTS~~a--------v~~~~~~l~~~~~~--~~~ 78 (248)
T COG1587 11 EQAEELAALLRKA--GAEPLELPLIEIEPLPDLEVALEDLDSADWVVFTSPNA--------VRFFFEALKEQGLD--ALK 78 (248)
T ss_pred hhhHHHHHHHHhC--CCcceeecceeeecchhHHHHHhccccCCEEEEECHHH--------HHHHHHHHHhhccc--ccc
Confidence 4455666677666 665444433222220 111344455667777666543 56677777664322 578
Q ss_pred CceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecce
Q 006697 177 QLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 216 (635)
Q Consensus 177 ~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g 216 (635)
++++++.| ..-.+.|+++|.+......
T Consensus 79 ~~~i~aVG-------------~~Ta~~l~~~G~~~~~~p~ 105 (248)
T COG1587 79 NKKIAAVG-------------EKTAEALRKLGIKVDFIPE 105 (248)
T ss_pred cCeEEEEc-------------HHHHHHHHHhCCCCCcCCC
Confidence 89999998 5677889999988655433
No 153
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=60.92 E-value=1.8e+02 Score=28.96 Aligned_cols=128 Identities=15% Similarity=0.119 Sum_probs=90.6
Q ss_pred CCeEEEEEECCCc---hHHHHHHHHHHHHHhhhCCceEEEEeCCCCC---------------------cCc-------hH
Q 006697 83 KTKVTVFYGTQTG---TAEGFAKALAEEIKARYEKAAVKVVDLDDYA---------------------MDD-------EQ 131 (635)
Q Consensus 83 ~~~v~I~YgSqtG---tte~~A~~l~~~l~~~~~g~~~~v~dl~~~~---------------------~~~-------~~ 131 (635)
|++|+++=+|-.| -+..+++.+.+..+++.++.++...||.+-. .++ +.
T Consensus 1 MskvL~I~as~~~~~S~S~~l~~~Fi~~yk~~~P~dev~~~DL~~e~iP~ld~~~~~a~~~~~~~~~t~~~~~~~~~sd~ 80 (202)
T COG1182 1 MSKVLVIKASPLGENSVSRKLADEFIETYKEKHPNDEVIERDLAAEPIPHLDEELLAAWFKPQAGEGTAEEKEALARSDK 80 (202)
T ss_pred CceEEEEecCCCccccHHHHHHHHHHHHHHHhCCCCeEEEeecccCCCcccCHHHHhcccCCccCCCCHHHHHHHHHHHH
Confidence 4678888888774 3577888888888888777777666664211 100 34
Q ss_pred HHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcC--------CCCCCCCCCceEEEEEecCcchhH----HHHHHHH
Q 006697 132 YEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEG--------NDRGPWLQQLKFGVFGLGNRQYEH----FNKIGIV 199 (635)
Q Consensus 132 ~~~~l~~~~~vif~~sTyg~G~~p~na~~F~~~L~~~--------~~~~~~l~~~~~aVFGlGds~Y~~----f~~~~k~ 199 (635)
+++++...+.+||+.|-| +-..|...+.+++.+... +.+...+.+|++.+...=---|.+ ++-...-
T Consensus 81 l~~ef~aAD~vVi~~PM~-Nf~iPa~LK~yiD~i~~aGkTFkYte~Gp~GLl~gKKv~~l~srGG~y~~~p~~~~~~~~Y 159 (202)
T COG1182 81 LLEEFLAADKVVIAAPMY-NFNIPAQLKAYIDHIAVAGKTFKYTENGPVGLLTGKKVLILTSRGGIYSEGPASMDHGEPY 159 (202)
T ss_pred HHHHHHhcCeEEEEeccc-ccCCCHHHHHHHHHHhcCCceEEeccCCcccccCCceEEEEECCCCcCCCCccchhhhHHH
Confidence 677788899999999999 778888888888887542 122356888999998753233533 5667777
Q ss_pred HHHHHHHCCCEE
Q 006697 200 LDEELCKQGGAR 211 (635)
Q Consensus 200 ld~~L~~lGa~~ 211 (635)
|...|.=+|.+-
T Consensus 160 Lr~ilgF~Gitd 171 (202)
T COG1182 160 LRTILGFLGITD 171 (202)
T ss_pred HHHHhhhcCCCc
Confidence 888888888864
No 154
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=58.93 E-value=40 Score=30.92 Aligned_cols=82 Identities=13% Similarity=0.092 Sum_probs=49.2
Q ss_pred hHHHHhcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCC
Q 006697 75 DEADIAAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEP 154 (635)
Q Consensus 75 ~~~~~~~~~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~ 154 (635)
+.+.+.+.+.-+.+-+|+..|+++.+|..+.+... +.+..++..++-... ...+.+...+|++++ .|+-
T Consensus 6 ~a~~~~~~~~i~~~G~G~s~~~a~e~~~kl~e~~~-----i~~~~~~~~e~~hg~---~~~~~~~~~vi~is~---~g~t 74 (153)
T cd05009 6 LAEKLKEAKSFYVLGRGPNYGTALEGALKLKETSY-----IHAEAYSAGEFKHGP---IALVDEGTPVIFLAP---EDRL 74 (153)
T ss_pred HHHHHhccCcEEEEcCCCCHHHHHHHHHHHHHHHh-----hcceeccHHHhccCh---hhhccCCCcEEEEec---CChh
Confidence 34444545555667778899999999998887742 235556555554332 122445556666553 3333
Q ss_pred ChhHHHHHHHHhc
Q 006697 155 TDNAARFYKWFTE 167 (635)
Q Consensus 155 p~na~~F~~~L~~ 167 (635)
.+.+.+..+++++
T Consensus 75 ~~~~~~~~~~~~~ 87 (153)
T cd05009 75 EEKLESLIKEVKA 87 (153)
T ss_pred HHHHHHHHHHHHH
Confidence 3456667777766
No 155
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=57.88 E-value=44 Score=34.17 Aligned_cols=90 Identities=12% Similarity=-0.047 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhhhCCceEEEEeCCCCCcC-c----hHHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCCCCCC
Q 006697 99 GFAKALAEEIKARYEKAAVKVVDLDDYAMD-D----EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGP 173 (635)
Q Consensus 99 ~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~-~----~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~~~L~~~~~~~~ 173 (635)
.-++.+++.|++. |+.+-.+.+-++... + +..+..+..++.+||.|++- .+.|.++|.....+
T Consensus 13 ~~~~~l~~~l~~~--G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS~na--------V~~~~~~l~~~~~~-- 80 (255)
T PRK05752 13 EECAALAASLAEA--GIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVSKPA--------ARLGLELLDRYWPQ-- 80 (255)
T ss_pred HHHHHHHHHHHHc--CCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEECHHH--------HHHHHHHHHhhCCC--
Confidence 3456777777776 766555433222110 0 11234567888888877543 56677888653322
Q ss_pred CCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeec
Q 006697 174 WLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (635)
Q Consensus 174 ~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~ 214 (635)
..+.++++.| +.-.+.|++.|.+...+
T Consensus 81 -~~~~~~~aVG-------------~~Ta~al~~~G~~~~~~ 107 (255)
T PRK05752 81 -PPQQPWFSVG-------------AATAAILQDYGLDVSYP 107 (255)
T ss_pred -CcCCEEEEEC-------------HHHHHHHHHcCCCcccC
Confidence 4457888887 45566777888765443
No 156
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=57.04 E-value=96 Score=34.66 Aligned_cols=128 Identities=16% Similarity=0.212 Sum_probs=75.8
Q ss_pred eEEEEEECCC-------chHHHHHHHHHHHHHhhhCCceEEEEeCCCCC--cCc-hHHHhhhcc--CCeEEEEEecCCCC
Q 006697 85 KVTVFYGTQT-------GTAEGFAKALAEEIKARYEKAAVKVVDLDDYA--MDD-EQYEEKLKK--ETLAFFMVATYGDG 152 (635)
Q Consensus 85 ~v~I~YgSqt-------Gtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~--~~~-~~~~~~l~~--~~~vif~~sTyg~G 152 (635)
+|.++-+|+. ..+++.++++.+.|++. + +++++..... .++ ....+++.. .+.+|+..+|||.+
T Consensus 2 ~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~--~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~~ 77 (452)
T cd00578 2 KIGFVTGSQHLYGEELLEQVEEYAREVADLLNEL--P--VEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGPA 77 (452)
T ss_pred EEEEEEecccccChhHHHHHHHHHHHHHHHHhcC--C--ceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEcccccccH
Confidence 4666667776 34667777777777654 4 4555555443 111 112233433 47899999999654
Q ss_pred CCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCc--------chhHHHHHHHHHHHHHHHCCCEEeecceeecCCC-C
Q 006697 153 EPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNR--------QYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQ-C 223 (635)
Q Consensus 153 ~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds--------~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~-~ 223 (635)
.-....++. + ++.+.+++..+. .+..+|+. ..+-..|.++|-+...- .|+..+ .
T Consensus 78 ------~~~~~~~~~-------~-~~Pvll~a~~~~~~~~~~~~~~~s~~g~-~~~~~~l~r~gi~~~~v--~g~~~d~~ 140 (452)
T cd00578 78 ------KMWIAGLSE-------L-RKPVLLLATQFNREIPDFMNLNQSACGL-REFGNILARLGIPFKVV--YGHWKDED 140 (452)
T ss_pred ------HHHHHHHHh-------c-CCCEEEEeCCCCCCCCchhhhhcchhhh-HHHHHHHHHcCCceeEE--ECCCCCHH
Confidence 223333443 2 467888887664 24455544 56777888999875433 344332 4
Q ss_pred chHHHHHHHH
Q 006697 224 IEDDFTAWRE 233 (635)
Q Consensus 224 ~e~~f~~W~~ 233 (635)
..+.+..|..
T Consensus 141 ~~~~i~~~~r 150 (452)
T cd00578 141 VLRKIESWAR 150 (452)
T ss_pred HHHHHHHHHH
Confidence 5677888875
No 157
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=56.07 E-value=95 Score=34.38 Aligned_cols=109 Identities=17% Similarity=0.105 Sum_probs=63.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCc-hHHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-EQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~-~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F 161 (635)
..-++|.|||..+++++.++.+. ++ |.++.++++.-+.+=+ +.+..-+.+.+.|+++=-++-.|..-....++
T Consensus 268 ad~~iV~~Gs~~~~a~ea~~~L~----~~--G~kvgvi~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ev 341 (407)
T PRK09622 268 AEVAIVALGTTYESAIVAAKEMR----KE--GIKAGVATIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFNEV 341 (407)
T ss_pred CCEEEEEEChhHHHHHHHHHHHH----hC--CCCeEEEEeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHHH
Confidence 45688999998888887777664 34 6677777776553332 22444455667788776666555544455555
Q ss_pred HHHHhcCCCCCCCCCCceE---EEEEecCcch--hHHHHHHHHHHH
Q 006697 162 YKWFTEGNDRGPWLQQLKF---GVFGLGNRQY--EHFNKIGIVLDE 202 (635)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~---aVFGlGds~Y--~~f~~~~k~ld~ 202 (635)
...|..... ..... .++|+|.... +..-++.+.+.+
T Consensus 342 ~~al~~~~~-----~~~~~v~~~~~g~gG~~~t~~~i~~~~~~l~~ 382 (407)
T PRK09622 342 TSAVYQTQG-----TKHPVVSNYIYGLGGRDMTIAHLCEIFEELNE 382 (407)
T ss_pred HHHHhccCc-----CCCceEeeeEECCCCCCCCHHHHHHHHHHHHh
Confidence 555543210 01233 6778877665 444444444443
No 158
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=55.96 E-value=70 Score=30.75 Aligned_cols=109 Identities=12% Similarity=0.204 Sum_probs=54.3
Q ss_pred hcCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCC-cCchHHHhhhccC--CeEEEEEecCCCCCCCh
Q 006697 80 AAGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYA-MDDEQYEEKLKKE--TLAFFMVATYGDGEPTD 156 (635)
Q Consensus 80 ~~~~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~-~~~~~~~~~l~~~--~~vif~~sTyg~G~~p~ 156 (635)
...+.+|.++ |.++..++++++.|+++|+++.+.-..--.++ .+++.++..+.+. +++++++.+ |-
T Consensus 45 ~~~~~~ifll-----G~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~-----Pk- 113 (172)
T PF03808_consen 45 EQRGKRIFLL-----GGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGA-----PK- 113 (172)
T ss_pred HHcCCeEEEE-----eCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCC-----CH-
Confidence 3355665554 55566666677777777887655433222222 2234466666544 555554433 22
Q ss_pred hHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCC
Q 006697 157 NAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGG 209 (635)
Q Consensus 157 na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa 209 (635)
-+.|....+.. +... .++|+|..- +.+.+..+..=+++.++|.
T Consensus 114 -QE~~~~~~~~~------l~~~--v~i~vG~~~-d~~aG~~~raP~w~~~~gl 156 (172)
T PF03808_consen 114 -QERWIARHRQR------LPAG--VIIGVGGAF-DFLAGKVKRAPKWMRRLGL 156 (172)
T ss_pred -HHHHHHHHHHH------CCCC--EEEEECchh-hhhccCcCccCHHHHHcCc
Confidence 23455555443 3322 566666432 3333333444445555443
No 159
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=53.50 E-value=38 Score=28.48 Aligned_cols=34 Identities=32% Similarity=0.325 Sum_probs=28.2
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEE
Q 006697 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKV 119 (635)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v 119 (635)
.+|+|+.++-.|++.-++.+|.+.+.+. ++...+
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~~--~i~~~v 34 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKEN--GIDVKV 34 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHC--CCceEE
Confidence 4789999999999999999999999766 554433
No 160
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=52.75 E-value=16 Score=40.14 Aligned_cols=125 Identities=12% Similarity=-0.022 Sum_probs=85.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhcc-CCeEEEEEecCCCCCCChhHHHH
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKK-ETLAFFMVATYGDGEPTDNAARF 161 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~-~~~vif~~sTyg~G~~p~na~~F 161 (635)
..-++|.-+=++|-+-.+|+.|++.+.+.|= ++ ++. -.++...+..+.+ +-.+++.+-|.-.|.+.+..++|
T Consensus 357 calslVgepi~yp~in~f~k~lH~k~issfl---vt--naq--~pe~~rnvk~vtqlyvsvda~Tktslk~idrPlfkdF 429 (601)
T KOG1160|consen 357 CALSLVGEPIMYPEINPFAKLLHQKLISSFL---VT--NAQ--FPEDIRNVKPVTQLYVSVDASTKTSLKKIDRPLFKDF 429 (601)
T ss_pred heeeeecccccchhhhHHHHHHHhccchHHh---cc--ccc--ChHHHhchhhhheeEEEEeecchhhhcCCCCchHHHH
Confidence 4567888889999999999999998876521 11 111 1111001111222 23456666677778899999999
Q ss_pred HHHHhcCCCC---CCCCCCceEEEEEecCcch--hHHHHHHHHHHHHHHHCCCEEeec
Q 006697 162 YKWFTEGNDR---GPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVP 214 (635)
Q Consensus 162 ~~~L~~~~~~---~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~v~~ 214 (635)
|+|+.+.... +....--++.++|.||+.= ..||.+++-+-.+++-+|++.+.+
T Consensus 430 wEr~~d~l~~lk~K~qrtvyRlTlVkg~n~dd~~Ayfnlv~rglp~fieVkGvty~ge 487 (601)
T KOG1160|consen 430 WERFLDSLKALKKKQQRTVYRLTLVKGWNSDDLPAYFNLVSRGLPDFIEVKGVTYCGE 487 (601)
T ss_pred HHHHHHHHHHHHHhhcceEEEEEEeccccccccHHHHHHHhccCCceEEEeceeEecc
Confidence 9998763211 1123345789999998885 889999999999999999987654
No 161
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=52.22 E-value=43 Score=28.48 Aligned_cols=38 Identities=21% Similarity=0.349 Sum_probs=29.5
Q ss_pred EEEEEeEEecCCCCCCceEEEEEEecCC--CCccCCCCeEEEecc
Q 006697 297 VNVAVRRELHKPDSDRSCIHLEFDVSGT--GITYETGDHVGVYVE 339 (635)
Q Consensus 297 a~V~~~~~L~~~~~~r~~~hie~di~~~--~l~Y~~GD~l~I~p~ 339 (635)
|+|++.++++. ++.+++|.+++. .+.|+||.|+.|.-.
T Consensus 2 ~~v~~~~~~s~-----~~~~~~~~~~~~~~~~~~~pGQ~v~v~~~ 41 (99)
T PF00970_consen 2 AKVVEIEELSP-----DVKIFRFKLPDPDQKLDFKPGQFVSVRVP 41 (99)
T ss_dssp EEEEEEEEESS-----SEEEEEEEESSTTTT-SSTTT-EEEEEEE
T ss_pred EEEEEEEEeCC-----CeEEEEEEECCCCcccccCcceEEEEEEc
Confidence 78888899873 688889988742 478999999999877
No 162
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.05 E-value=3.2e+02 Score=29.04 Aligned_cols=118 Identities=9% Similarity=0.010 Sum_probs=75.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCc--hHHHhhhccC---CeEEEEEecC--------
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD--EQYEEKLKKE---TLAFFMVATY-------- 149 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~--~~~~~~l~~~---~~vif~~sTy-------- 149 (635)
..+..|+....--.+..|++...+.+++- |+..+++.+.+-..++ ...+.++.++ +.+++-.|--
T Consensus 33 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~--Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i 110 (301)
T PRK14194 33 EPALAVILVGNDPASQVYVRNKILRAEEA--GIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARV 110 (301)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHH
Confidence 45677777777778888888888888777 7888888775432211 1122223332 3455555522
Q ss_pred -----------------------C-CCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHH
Q 006697 150 -----------------------G-DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELC 205 (635)
Q Consensus 150 -----------------------g-~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~ 205 (635)
| .+-.|-++..-+++|+... ..++|++++|+|.|.. +++-+...|.
T Consensus 111 ~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~aii~lL~~~~---i~l~Gk~V~vIG~s~i-------vG~PmA~~L~ 180 (301)
T PRK14194 111 LQAINPLKDVDGFHSENVGGLSQGRDVLTPCTPSGCLRLLEDTC---GDLTGKHAVVIGRSNI-------VGKPMAALLL 180 (301)
T ss_pred HhccCchhccCccChhhhhHHhcCCCCCCCCcHHHHHHHHHHhC---CCCCCCEEEEECCCCc-------cHHHHHHHHH
Confidence 1 1123556666666666543 3499999999997644 4788888998
Q ss_pred HCCCEEe
Q 006697 206 KQGGARL 212 (635)
Q Consensus 206 ~lGa~~v 212 (635)
+.|++..
T Consensus 181 ~~gatVt 187 (301)
T PRK14194 181 QAHCSVT 187 (301)
T ss_pred HCCCEEE
Confidence 9998754
No 163
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=50.33 E-value=1.7e+02 Score=28.09 Aligned_cols=42 Identities=7% Similarity=0.089 Sum_probs=29.0
Q ss_pred hccCCeEEEEEecCCCCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEE
Q 006697 136 LKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFG 184 (635)
Q Consensus 136 l~~~~~vif~~sTyg~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFG 184 (635)
+...+.++|++|-| ++.-|...+.-++||... ..|+...|..
T Consensus 84 i~~aD~ivFvtPqY-N~gypA~LKNAlD~lyhe------W~gKPalivS 125 (199)
T KOG4530|consen 84 ILEADSIVFVTPQY-NFGYPAPLKNALDWLYHE------WAGKPALIVS 125 (199)
T ss_pred HhhcceEEEecccc-cCCCchHHHHHHHHhhhh------hcCCceEEEE
Confidence 55678999999999 555556667778888653 4455555554
No 164
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=49.50 E-value=81 Score=31.42 Aligned_cols=87 Identities=14% Similarity=0.089 Sum_probs=50.3
Q ss_pred HHHHHHHHHhhhCCceEEEEeC---CCCCcCc-hHHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCCCCCCCCC
Q 006697 101 AKALAEEIKARYEKAAVKVVDL---DDYAMDD-EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQ 176 (635)
Q Consensus 101 A~~l~~~l~~~~~g~~~~v~dl---~~~~~~~-~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~~~L~~~~~~~~~l~ 176 (635)
+..+++.|.+. |+.+..+.+ ...+... ......+..++.+||.|++- +..|++++++. ....+.
T Consensus 13 ~~~l~~~l~~~--G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iiftS~~a--------v~~~~~~~~~~--~~~~~~ 80 (249)
T PRK05928 13 AEELVELLREL--GFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFTSKNA--------VEFLLSALKKK--KLKWPK 80 (249)
T ss_pred HHHHHHHHHHc--CCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEECHHH--------HHHHHHHHHhc--CcCCCC
Confidence 34555666655 665544322 2211110 11223356778888887654 77788888721 123467
Q ss_pred CceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEe
Q 006697 177 QLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (635)
Q Consensus 177 ~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v 212 (635)
+.++.+.| +...+.|++.|.+..
T Consensus 81 ~~~~~avG-------------~~Ta~~l~~~G~~~~ 103 (249)
T PRK05928 81 NKKYAAIG-------------EKTALALKKLGGKVV 103 (249)
T ss_pred CCEEEEEC-------------HHHHHHHHHcCCCcc
Confidence 78888888 456677778887653
No 165
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=48.44 E-value=92 Score=32.26 Aligned_cols=97 Identities=7% Similarity=-0.013 Sum_probs=56.4
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCC---C-cCchHHHhhhccCCeEEEEEecCCCCCCChhH
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDY---A-MDDEQYEEKLKKETLAFFMVATYGDGEPTDNA 158 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~---~-~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na 158 (635)
.++|+|- -.+.-++.+++.|++. |.++-.+.+=++ + ...+..+.++.+++.+||.|++- .
T Consensus 18 g~~IlvT------Rp~~q~~~l~~~L~~~--G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~NA--------V 81 (266)
T PRK08811 18 AWTLISL------RPSGEHAPLRRAVARH--GGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAA--------V 81 (266)
T ss_pred CCEEEEe------CCHHHHHHHHHHHHHC--CCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHHH--------H
Confidence 5566664 2344567788888877 666554433211 1 11112345577889888887533 4
Q ss_pred HHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEee
Q 006697 159 ARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (635)
Q Consensus 159 ~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~ 213 (635)
+.|..++ +. .++.+++++++| +.-.+.|++.|.....
T Consensus 82 ~~~~~~~-~~----~~~~~~~~~AVG-------------~~TA~aL~~~G~~~~~ 118 (266)
T PRK08811 82 RAAHRLL-PL----QRPARAHWLSVG-------------EGTARALQACGIDEVV 118 (266)
T ss_pred HHHHHHh-cc----cCccCCeEEEEC-------------HHHHHHHHHcCCCcee
Confidence 4445433 21 236788888888 4555677788887543
No 166
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=46.20 E-value=2.1e+02 Score=25.24 Aligned_cols=108 Identities=15% Similarity=0.046 Sum_probs=61.0
Q ss_pred EEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCC-CCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHh
Q 006697 88 VFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDD-YAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFT 166 (635)
Q Consensus 88 I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~-~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~~~L~ 166 (635)
|+.++.-|....+...+...+-+.. |++ ++++.. ...+ .+...+.+.+.-+++.|++ .+.....+.++.+.++
T Consensus 2 vl~~~~~~e~H~lG~~~~~~~l~~~-G~~--V~~lg~~~~~~--~l~~~~~~~~pdvV~iS~~-~~~~~~~~~~~i~~l~ 75 (119)
T cd02067 2 VVIATVGGDGHDIGKNIVARALRDA-GFE--VIDLGVDVPPE--EIVEAAKEEDADAIGLSGL-LTTHMTLMKEVIEELK 75 (119)
T ss_pred EEEEeeCCchhhHHHHHHHHHHHHC-CCE--EEECCCCCCHH--HHHHHHHHcCCCEEEEecc-ccccHHHHHHHHHHHH
Confidence 5667777888888777666664433 554 466543 3332 3555555555433443433 3444477788888887
Q ss_pred cCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecce
Q 006697 167 EGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 216 (635)
Q Consensus 167 ~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g 216 (635)
+.. ..+..+.+=|. .+.... +.++++|+..+++.+
T Consensus 76 ~~~-----~~~~~i~vGG~------~~~~~~----~~~~~~G~D~~~~~~ 110 (119)
T cd02067 76 EAG-----LDDIPVLVGGA------IVTRDF----KFLKEIGVDAYFGPA 110 (119)
T ss_pred HcC-----CCCCeEEEECC------CCChhH----HHHHHcCCeEEECCH
Confidence 742 12455555442 122212 467889998877533
No 167
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=46.17 E-value=38 Score=31.44 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=30.9
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcC
Q 006697 86 VTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD 128 (635)
Q Consensus 86 v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~ 128 (635)
-+++|.|.|...+..|+.|.+-+.++ |..+++..+.+.+..
T Consensus 24 ~~~Ll~SDT~~G~~~a~il~~~l~~~--g~~v~~~~i~~l~~~ 64 (136)
T PF09651_consen 24 EVVLLHSDTPDGRLCAEILKEYLEEK--GINVEVVEIEGLQTE 64 (136)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHT--T-EEEEEE---E---
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHc--CCeEEEEEeeeeccc
Confidence 79999999999999999999999987 777887765554443
No 168
>cd07363 45_DOPA_Dioxygenase The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine. This subfamily is composed of plant 4,5-DOPA Dioxygenase, the uncharacterized Escherichia coli protein Jw3007, and similar proteins. 4,5-DOPA Dioxygenase catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine (4,5-DOPA). The reaction results in the opening of the cyclic ring between carbons 4 and 5 and producing an unstable seco-DOPA that rearranges to betalamic acid. 4,5-DOPA Dioxygenase is a key enzyme in the biosynthetic pathway of the plant pigment betalain. Homologs of DODA are present not only in betalain-producing plants but also in bacteria and archaea. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated ca
Probab=43.85 E-value=71 Score=32.82 Aligned_cols=83 Identities=10% Similarity=0.016 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhc-cCCe-EEEEEecCCCCCCChhHHHHHHHHhcCCCCCCC
Q 006697 97 AEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLK-KETL-AFFMVATYGDGEPTDNAARFYKWFTEGNDRGPW 174 (635)
Q Consensus 97 te~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~-~~~~-vif~~sTyg~G~~p~na~~F~~~L~~~~~~~~~ 174 (635)
..++|++|++.+.++ |+.+...+--..|..--.-+.-+. +.++ +|-++-.. +..|...-+|=+.|..
T Consensus 79 ~~eLa~~i~~~l~~~--gi~~~~~~~~~lDHG~~vPL~~~~p~~~iPvV~isi~~--~~~~~~~~~lG~aL~~------- 147 (253)
T cd07363 79 SPELAERVAELLKAA--GIPARLDPERGLDHGAWVPLKLMYPDADIPVVQLSLPA--SLDPAEHYALGRALAP------- 147 (253)
T ss_pred CHHHHHHHHHHHHhc--CCCccccCCcCCcccHHHHHHHHcCCCCCcEEEEEecC--CCCHHHHHHHHHHHHh-------
Confidence 345899999999887 776665431112222100111122 2333 33333322 2344444455555655
Q ss_pred CCCceEEEEEecCcch
Q 006697 175 LQQLKFGVFGLGNRQY 190 (635)
Q Consensus 175 l~~~~~aVFGlGds~Y 190 (635)
+...+++|+|.|+.+.
T Consensus 148 l~~~~v~ii~SG~lsH 163 (253)
T cd07363 148 LRDEGVLIIGSGSSVH 163 (253)
T ss_pred hhhCCEEEEecCccee
Confidence 4456899999999875
No 169
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=43.30 E-value=48 Score=38.38 Aligned_cols=42 Identities=12% Similarity=0.271 Sum_probs=34.4
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEE--eCCCC
Q 006697 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV--DLDDY 125 (635)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~--dl~~~ 125 (635)
+++||+++.||--||+--++..+.+.|+++ |+++++. ++.++
T Consensus 505 k~mKILvaCGsGiGTStmva~kIkk~Lke~--GI~veV~~~~Vsev 548 (602)
T PRK09548 505 KPVRILAVCGQGQGSSMMMKMKIKKYLDKR--GIPIIMDSCAVNDY 548 (602)
T ss_pred cccEEEEECCCCchHHHHHHHHHHHHHHHc--CCCeEEEEechHhC
Confidence 567999999999999999999999999988 7765433 44444
No 170
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=43.28 E-value=49 Score=33.02 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=32.3
Q ss_pred eeEEEEEeEEecCCCCCCceEEEEEEecCC-CCccCCCCeEEEeccC
Q 006697 295 CRVNVAVRRELHKPDSDRSCIHLEFDVSGT-GITYETGDHVGVYVEN 340 (635)
Q Consensus 295 ~~a~V~~~~~L~~~~~~r~~~hie~di~~~-~l~Y~~GD~l~I~p~N 340 (635)
|.++|++.+.++. +++++.|+++.. .+.|+||.++.|..++
T Consensus 1 ~~~~v~~~~~~~~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 42 (232)
T cd06212 1 FVGTVVAVEALTH-----DIRRLRLRLEEPEPIKFFAGQYVDITVPG 42 (232)
T ss_pred CceEEEEEeecCC-----CeEEEEEEcCCCCcCCcCCCCeEEEEcCC
Confidence 4588888888864 678888887653 5789999999998654
No 171
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=42.85 E-value=95 Score=30.51 Aligned_cols=89 Identities=20% Similarity=0.123 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhhCCceEEEEeCCCCCc----CchHHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCCCCCCCCC
Q 006697 101 AKALAEEIKARYEKAAVKVVDLDDYAM----DDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWLQ 176 (635)
Q Consensus 101 A~~l~~~l~~~~~g~~~~v~dl~~~~~----~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~~~L~~~~~~~~~l~ 176 (635)
+..+.+.|++. |+.+..+.+-+... ........+...+.+||.|+.- ++.|++.+.... ...+.
T Consensus 10 ~~~l~~~L~~~--G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iiftS~~a--------v~~~~~~~~~~~--~~~~~ 77 (239)
T cd06578 10 ADELAALLEAL--GAEVLELPLIEIEPLDDAELDAALADLDEYDWLIFTSPNA--------VEAFFEALEELG--LRALA 77 (239)
T ss_pred hHHHHHHHHHc--CCcEEEeeeEEEecCChHHHHHHHHhcCCCCEEEEECHHH--------HHHHHHHHHhhC--Ccccc
Confidence 55677777766 66655443322211 1112333455677788877743 677777776532 12377
Q ss_pred CceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeec
Q 006697 177 QLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (635)
Q Consensus 177 ~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~ 214 (635)
++++.+.| +...+.|++.|.+....
T Consensus 78 ~~~~~avG-------------~~Ta~~l~~~g~~~~~~ 102 (239)
T cd06578 78 GLKIAAVG-------------PKTAEALREAGLTADFV 102 (239)
T ss_pred CCEEEEEC-------------HHHHHHHHHcCCCceeC
Confidence 88888887 67778888999887654
No 172
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=41.76 E-value=25 Score=32.30 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=35.5
Q ss_pred eEEEEEecCcch--hHHHHHHHHHHHHHHHCCCEEeecceeecCCCCchHHHHHH
Q 006697 179 KFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 231 (635)
Q Consensus 179 ~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~~~e~~f~~W 231 (635)
+++|+-.||.-+ .-++..+..+.++|++.|.+........|+.+.+.+.+.+|
T Consensus 1 ~v~ii~~G~El~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~ 55 (133)
T cd00758 1 RVAIVTVSDELSQGQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEA 55 (133)
T ss_pred CEEEEEeCccccCCceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHH
Confidence 478888898765 44567788999999999998665434445433344444444
No 173
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=41.64 E-value=1.1e+02 Score=30.81 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCCh-hHHHHHHHHhc
Q 006697 100 FAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTD-NAARFYKWFTE 167 (635)
Q Consensus 100 ~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~-na~~F~~~L~~ 167 (635)
+-..|++.|++. |+++.+..+++.+..- -.+.|.++++||+.+-+ +.+..++ ..+.|.+++++
T Consensus 24 ~~~~~~~~L~~~--gf~V~~~~~~d~~~~~--~~~~L~~~D~lV~~~~~-~~~~l~~eq~~~l~~~V~~ 87 (215)
T cd03142 24 MHGTIAAALAEY--GFDVQTATLDEPEHGL--TEEVLAETDVLLWWGHI-AHDEVKDEIVERVHRRVLD 87 (215)
T ss_pred HHHHHHHHHHhc--CcEEEEEeccCccccC--CHhHHhcCCEEEEeCCC-CcCcCCHHHHHHHHHHHHc
Confidence 344556666666 7888877777643100 01127888988875544 4556665 57778888866
No 174
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=41.27 E-value=47 Score=33.73 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=30.1
Q ss_pred eEEecCCCCC-CceEEEEEEecCCCCccCCCCeEEEeccC
Q 006697 302 RRELHKPDSD-RSCIHLEFDVSGTGITYETGDHVGVYVEN 340 (635)
Q Consensus 302 ~~~L~~~~~~-r~~~hie~di~~~~l~Y~~GD~l~I~p~N 340 (635)
.|.|.++++. -.+++|+|+.++....|+||.++.|.+++
T Consensus 5 ~~~~~~~~~~~~~v~~l~l~~~~~~~~f~pGQ~v~l~~~~ 44 (245)
T cd06200 5 ARVLLNPGSQGAPLWRLRLTPPDAGAQWQAGDIAEIGPRH 44 (245)
T ss_pred eeeecCCCCCCCceEEEEEecCCCCCCccCCcEEEecCCC
Confidence 3446666653 27999999987667899999999999765
No 175
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=41.20 E-value=1.2e+02 Score=32.60 Aligned_cols=98 Identities=16% Similarity=0.255 Sum_probs=68.8
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHHH
Q 006697 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYK 163 (635)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~~ 163 (635)
..++++||=..|.-+.+|+.|.+.+.++ |..+-+++......+- . -+|+.-....+.+...|++
T Consensus 76 P~vVl~HGL~G~s~s~y~r~L~~~~~~r--g~~~Vv~~~Rgcs~~~-------n-------~~p~~yh~G~t~D~~~~l~ 139 (345)
T COG0429 76 PLVVLFHGLEGSSNSPYARGLMRALSRR--GWLVVVFHFRGCSGEA-------N-------TSPRLYHSGETEDIRFFLD 139 (345)
T ss_pred ceEEEEeccCCCCcCHHHHHHHHHHHhc--CCeEEEEecccccCCc-------c-------cCcceecccchhHHHHHHH
Confidence 4788888888888888999999999999 8888888877654432 1 1233224444578999999
Q ss_pred HHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEE
Q 006697 164 WFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGAR 211 (635)
Q Consensus 164 ~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~ 211 (635)
+++.. ....++..+|. +- .+..+..+|-+-|...
T Consensus 140 ~l~~~------~~~r~~~avG~---SL-----GgnmLa~ylgeeg~d~ 173 (345)
T COG0429 140 WLKAR------FPPRPLYAVGF---SL-----GGNMLANYLGEEGDDL 173 (345)
T ss_pred HHHHh------CCCCceEEEEe---cc-----cHHHHHHHHHhhccCc
Confidence 99874 44677888884 21 1456677777766653
No 176
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=40.39 E-value=1.2e+02 Score=32.94 Aligned_cols=103 Identities=14% Similarity=0.204 Sum_probs=59.2
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~ 162 (635)
+.+|.++||.-|-.+++-..-+.++... +-.+.. .|.- +..+..+|. ....|..++....
T Consensus 66 ~d~V~~ifGc~TSasRKaVlPvvE~~~~------LL~Yp~-~YEG--------~E~S~nviY-----tGa~PNQ~~~pl~ 125 (363)
T PF13433_consen 66 EDGVRAIFGCYTSASRKAVLPVVERHNA------LLFYPT-QYEG--------FECSPNVIY-----TGAAPNQQLLPLI 125 (363)
T ss_dssp HS---EEEE--SHHHHHHHHHHHHHCT-------EEEE-S-----------------TTEEE------S--GGGTHHHHH
T ss_pred hCCccEEEecchhhhHHHHHHHHHhcCc------eEEecc-cccc--------ccCCCceEE-----cCCCchhhHHHHH
Confidence 4668888888888888776666554321 212222 2321 122333443 2334567899999
Q ss_pred HHHhcCCCCCCCCCC-ceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecc
Q 006697 163 KWFTEGNDRGPWLQQ-LKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPL 215 (635)
Q Consensus 163 ~~L~~~~~~~~~l~~-~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~ 215 (635)
+|+.+. .| +++...|. +|-|=-..-+.+.+.+++.|++.+.+.
T Consensus 126 ~~~~~~-------~G~~r~~lvGS---dYv~pre~Nri~r~~l~~~GgevvgE~ 169 (363)
T PF13433_consen 126 DYLLEN-------FGAKRFYLVGS---DYVYPRESNRIIRDLLEARGGEVVGER 169 (363)
T ss_dssp HHHHHH-------S--SEEEEEEE---SSHHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHhc-------cCCceEEEecC---CccchHHHHHHHHHHHHHcCCEEEEEE
Confidence 999774 36 89999994 787777778888899999999877654
No 177
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=39.84 E-value=71 Score=34.23 Aligned_cols=78 Identities=18% Similarity=0.133 Sum_probs=54.2
Q ss_pred cCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCch-HHHhhhccCCeEEEEEecCCCCCCChhHH
Q 006697 81 AGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDE-QYEEKLKKETLAFFMVATYGDGEPTDNAA 159 (635)
Q Consensus 81 ~~~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~-~~~~~l~~~~~vif~~sTyg~G~~p~na~ 159 (635)
++..-++|.|||+++.+.+.|+.|.+ + |+++.++|+....+=+. .+...+.+.+.+|++=-.+-.|..-..
T Consensus 200 ~G~di~iva~G~~~~~a~eAa~~L~~----~--Gi~v~vi~~~~l~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~-- 271 (327)
T PRK09212 200 EGSDVTIVTFSIQVKLALEAAELLEK----E--GISVEVIDLRTLRPLDTETIIESVKKTNRLVVVEEGWPFAGVGAE-- 271 (327)
T ss_pred eCCCEEEEEccHHHHHHHHHHHHHHh----c--CCcEEEEEEecCCCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHH--
Confidence 45666888999999999888887743 4 77889898876655443 255556677888888766656664444
Q ss_pred HHHHHHhc
Q 006697 160 RFYKWFTE 167 (635)
Q Consensus 160 ~F~~~L~~ 167 (635)
+.++|.+
T Consensus 272 -la~~l~~ 278 (327)
T PRK09212 272 -IAALIMK 278 (327)
T ss_pred -HHHHHHH
Confidence 5555554
No 178
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=39.41 E-value=57 Score=28.18 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=31.7
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEe
Q 006697 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVD 121 (635)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~d 121 (635)
.+|+++.||-.||+.-+|..+.+.+.++ |+++++..
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~~--gi~~~v~~ 38 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQSH--NIPVELIQ 38 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHHC--CCeEEEEE
Confidence 3799999999999999999999999988 88776664
No 179
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=38.74 E-value=1.9e+02 Score=29.44 Aligned_cols=100 Identities=18% Similarity=0.214 Sum_probs=60.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEE---eCCCCCcCchH--HHhhhccCCeEEEEEecCCCCCCChh
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV---DLDDYAMDDEQ--YEEKLKKETLAFFMVATYGDGEPTDN 157 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~---dl~~~~~~~~~--~~~~l~~~~~vif~~sTyg~G~~p~n 157 (635)
+++|+|+-+.... ..|.+.|..+ |+.+..+ +..-...+... -.....+.+.++|-||..
T Consensus 123 ~~~vl~~~~~~~r------~~l~~~L~~~--G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~ftS~~~-------- 186 (248)
T COG1587 123 GKRVLILRGNGGR------EVLEEKLEER--GAEVREVEVYRTEPPPLDEATLIELLKLGEVDAVVFTSSSA-------- 186 (248)
T ss_pred CCeEEEEcCCCch------HHHHHHHHhC--CCEEEEEeeeeecCCCccHHHHHHHHHhCCCCEEEEeCHHH--------
Confidence 4676666443322 5677777777 7665443 22222221100 112234557777777765
Q ss_pred HHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEee
Q 006697 158 AARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (635)
Q Consensus 158 a~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~ 213 (635)
++.|++.+...... ++..++++.+| ....+.++++|.+...
T Consensus 187 v~~~~~~~~~~~~~--~~~~~~v~~IG-------------~~Ta~~l~~~G~~~~~ 227 (248)
T COG1587 187 VRALLALAPESGIE--FLERKRVASIG-------------PRTAETLKELGITVDI 227 (248)
T ss_pred HHHHHHHccccchh--HhhCceEEEec-------------HHHHHHHHHcCCccee
Confidence 88899988764311 46678899998 6777889999988644
No 180
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=38.30 E-value=1e+02 Score=34.96 Aligned_cols=89 Identities=10% Similarity=0.126 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhhhCCceEEEE---eCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCCCCCCC
Q 006697 98 EGFAKALAEEIKARYEKAAVKVV---DLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPW 174 (635)
Q Consensus 98 e~~A~~l~~~l~~~~~g~~~~v~---dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~~~L~~~~~~~~~ 174 (635)
+.-|..+++.|++. |.++-.+ .+...... +..+.++.+++-+||-|+. ....|+++|.....+-..
T Consensus 260 ~~q~~~l~~~L~~~--GA~v~~~P~i~~~~~~~~-~~~l~~l~~ydwlvFTS~n--------gV~~Ff~~l~~~~~D~R~ 328 (474)
T PRK07168 260 TNKTSVMKQKLQEA--GAEIYQIPTFKKEEYTLT-LEQINEIFNVNRLVFCSAE--------SVEILMQSCSKYKKDIRS 328 (474)
T ss_pred HHHHHHHHHHHHHc--CCEEEEeccEEeeCCCCc-HHHHHHhccCCEEEEcCHH--------HHHHHHHHHHHcCCChHH
Confidence 34456677777766 6554333 22222221 3467778888877776553 367788999875444233
Q ss_pred CCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEE
Q 006697 175 LQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGAR 211 (635)
Q Consensus 175 l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~ 211 (635)
|. .++|+.| ....+.|++.|...
T Consensus 329 l~-~kiaavG-------------~~Ta~aL~~~Gl~~ 351 (474)
T PRK07168 329 LQ-AELQHMN-------------VATQEKLMQYGLLS 351 (474)
T ss_pred hC-CEEEEEC-------------HHHHHHHHhCCCcc
Confidence 55 6888888 45667888888754
No 181
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=38.22 E-value=93 Score=31.31 Aligned_cols=85 Identities=15% Similarity=-0.011 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhcc-CCeEEEEEecCCCCCCChhHHHH-HHHHhcCCCCCCCCCCc
Q 006697 101 AKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKK-ETLAFFMVATYGDGEPTDNAARF-YKWFTEGNDRGPWLQQL 178 (635)
Q Consensus 101 A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~-~~~vif~~sTyg~G~~p~na~~F-~~~L~~~~~~~~~l~~~ 178 (635)
++.+++.|.+. |..+..+.+=++....+.....+.. ++.+||.|+. +.++ .++..+. ..+.++
T Consensus 12 ~~~l~~~L~~~--G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifTS~n---------aV~~~~~~~~~~----~~~~~~ 76 (240)
T PRK09189 12 AERTAARLRAM--GHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVTSAE---------AVRHLAALGERL----LPHLAL 76 (240)
T ss_pred hHHHHHHHHHC--CCceEEecccccccChhhhhhhhcCCcCEEEEECHH---------HHHHHHhcchhh----HHhcCC
Confidence 45566666666 7666666544433211112222333 4667676543 4444 3321111 125677
Q ss_pred eEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEee
Q 006697 179 KFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (635)
Q Consensus 179 ~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~ 213 (635)
++++.| +.-.+.|++.|.+.+.
T Consensus 77 ~~~aVG-------------~~Ta~~l~~~G~~~~~ 98 (240)
T PRK09189 77 PLFAVG-------------EATAEAARELGFRHVI 98 (240)
T ss_pred eEEEEc-------------HHHHHHHHHcCCCCCc
Confidence 888887 5666778888987544
No 182
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=36.84 E-value=3.4e+02 Score=25.22 Aligned_cols=131 Identities=16% Similarity=0.195 Sum_probs=62.4
Q ss_pred EEEEECCCchHHHHHHHHHHHHHhh-hCCceEEEEeCCCCCcCchHHHhhhc-----cC-CeEEEEEecC-CCCCCChhH
Q 006697 87 TVFYGTQTGTAEGFAKALAEEIKAR-YEKAAVKVVDLDDYAMDDEQYEEKLK-----KE-TLAFFMVATY-GDGEPTDNA 158 (635)
Q Consensus 87 ~I~YgSqtGtte~~A~~l~~~l~~~-~~g~~~~v~dl~~~~~~~~~~~~~l~-----~~-~~vif~~sTy-g~G~~p~na 158 (635)
+++||+..+--++..++|.+.+... +..+.+..++..+.+..+ ++..+. .. ++||+--+.. .+....+..
T Consensus 1 Yll~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~s~slF~~~klvii~~~~~l~~~~~~~~~ 78 (172)
T PF06144_consen 1 YLLYGEDSFLIEEYIKKIRKALIKKDFDDFNVIVFDGSEDDIDE--LLEELQSPSLFGDKKLVIIKNAPFLKDKLKKKEI 78 (172)
T ss_dssp EEEEES-HHHHHHHHHHHHHHHHTTTEEEEEEEE-STTS-HHH---HTTTSTTTTSSSSEEEEEEE-----TT-S-TTHH
T ss_pred CEEEeCcHHHHHHHHHHHHHHhhcCCCccceEEEEccccCcHHH--HHHHHhcCCccCCCeEEEEecCccccccccHHHH
Confidence 5899999999999999999996543 112223333443333221 233322 23 3444434433 344455667
Q ss_pred HHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecceeecCCCCchHHHHHHHHHHHHH
Q 006697 159 ARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELVWPE 238 (635)
Q Consensus 159 ~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~~~e~~f~~W~~~l~~~ 238 (635)
..|.+++.+. ..-.+-|+... +.... .+.+-+.+++.|.-.-++.. .+.++..|..+....
T Consensus 79 ~~l~~~l~~~-------~~~~~lii~~~----~~~~~-~~k~~k~l~~~~~~~~~~~~-------~~~~~~~~i~~~~~~ 139 (172)
T PF06144_consen 79 KALIEYLSNP-------PPDCILIIFSE----EKLDK-RKKLYKALKKQAIVIECKKP-------KEQELPRWIKERAKK 139 (172)
T ss_dssp HHHHHHTTT---------SSEEEEEEES-----S--H-HHHHHHHHTTTEEEEEE-----------TTTHHHHHHHHHHH
T ss_pred HHHHHHHhCC-------CCCEEEEEEeC----Cchhh-hhhHHHHHhcccceEEecCC-------CHHHHHHHHHHHHHH
Confidence 7788888763 23345555533 12222 23355666664432222211 346677887665444
No 183
>cd07371 2A5CPDO_AB The alpha and beta subunits of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. This subfamily contains both alpha and beta subunits of 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, an intermediate during p-chloronitrobenzene degradation. 2A5CPDO is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. Alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication.
Probab=36.78 E-value=1.3e+02 Score=31.20 Aligned_cols=104 Identities=10% Similarity=0.053 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCc--hHHHhhhc-cCCe-EEEEEecCCCCCCChhHHHHHHHHhcCCCCC
Q 006697 97 AEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD--EQYEEKLK-KETL-AFFMVATYGDGEPTDNAARFYKWFTEGNDRG 172 (635)
Q Consensus 97 te~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~--~~~~~~l~-~~~~-vif~~sTyg~G~~p~na~~F~~~L~~~~~~~ 172 (635)
..++|++|++.+.+. |+.+...+-.+...+. -.-+.-+. +.+. +|.++-..+ .-.+...-+|=+-|.+.-.
T Consensus 86 ~~eLA~~i~~~~~~~--gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~vs~~~~-~~~~~~~~~lG~al~~~l~-- 160 (268)
T cd07371 86 DVELAEACVEEGRKA--GLVTRMMRYPRFPIDTGTITALTLMRPGTDIPPVVISANNL-YLSGEETEGEMDLAGKATR-- 160 (268)
T ss_pred CHHHHHHHHHHHHHC--CCcEEEecCCCCCCCchhHHHHHHhcCCCCCCeEEEEecCc-CCCHHHHHHHHHHHHHHHH--
Confidence 467899999999888 8777664433332221 00011122 2333 333332332 2222333333333432100
Q ss_pred CCCCCceEEEEEecCcchh------------HHHHHHHHHHHHHHHC
Q 006697 173 PWLQQLKFGVFGLGNRQYE------------HFNKIGIVLDEELCKQ 207 (635)
Q Consensus 173 ~~l~~~~~aVFGlGds~Y~------------~f~~~~k~ld~~L~~l 207 (635)
-.+++++|+|.|+.+.. .|...++.+|+++.++
T Consensus 161 --~~~~rv~iIgSG~lsH~l~~~~~~~~~~~~~~~~~~~fD~~~~~~ 205 (268)
T cd07371 161 --DAGKRVAVLGSGGLSHSHFHEEIDPPKDHIESEEGDKWNRRMLEL 205 (268)
T ss_pred --HcCCcEEEEEecCccccccCCCCCcccccccchhhHHHHHHHHHH
Confidence 12478999999988752 2335667777776554
No 184
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=36.38 E-value=90 Score=26.27 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=30.5
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEE--EEeCCCC
Q 006697 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVK--VVDLDDY 125 (635)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~--v~dl~~~ 125 (635)
++|+++.||--||+.-++..|.+.+.+. +.... ..++++.
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~--~~~~~v~~~~~~~~ 42 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKA--GLEIPVTNSAIDEL 42 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHC--CCceEEEEcchhhC
Confidence 4799999999999999999999999866 54433 3344444
No 185
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.07 E-value=5.7e+02 Score=27.06 Aligned_cols=118 Identities=10% Similarity=0.023 Sum_probs=77.1
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCc--hHHHhhhccC---CeEEEEEecC--------
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD--EQYEEKLKKE---TLAFFMVATY-------- 149 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~--~~~~~~l~~~---~~vif~~sTy-------- 149 (635)
..++.|+.....-.+..|++...+.+++- |+.++++.+...-.++ ...+.++.++ +.+++-.|=-
T Consensus 32 ~p~La~i~vg~~~~s~~Yv~~k~k~a~~~--Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i 109 (296)
T PRK14188 32 TPGLAVVLVGEDPASQVYVRSKGKQTKEA--GMASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAV 109 (296)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHH
Confidence 46788888888888999999888888877 8888888775432221 1123333333 3555554422
Q ss_pred ----------------C--------CCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHH
Q 006697 150 ----------------G--------DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELC 205 (635)
Q Consensus 150 ----------------g--------~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~ 205 (635)
+ .+-.|-++..-++.|+.... .++|++++|+| ..+.+++-+..+|.
T Consensus 110 ~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~ai~~ll~~~~i---~~~Gk~V~viG-------rs~~mG~PmA~~L~ 179 (296)
T PRK14188 110 IQAIDPEKDVDGLHVVNAGRLATGETALVPCTPLGCMMLLRRVHG---DLSGLNAVVIG-------RSNLVGKPMAQLLL 179 (296)
T ss_pred HhccCcccccccCChhhHHHHhCCCCCCcCCCHHHHHHHHHHhCC---CCCCCEEEEEc-------CCcchHHHHHHHHH
Confidence 1 11246666666777765432 39999999998 22456788888998
Q ss_pred HCCCEEe
Q 006697 206 KQGGARL 212 (635)
Q Consensus 206 ~lGa~~v 212 (635)
+.|++..
T Consensus 180 ~~g~tVt 186 (296)
T PRK14188 180 AANATVT 186 (296)
T ss_pred hCCCEEE
Confidence 8898754
No 186
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=34.90 E-value=2.7e+02 Score=30.64 Aligned_cols=110 Identities=14% Similarity=0.066 Sum_probs=60.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCc-hHHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD-EQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~-~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F 161 (635)
..-++|.|||..|++++.++.+.+ + |.++-++-+..+-+-- +.+..-+.+.+.|+++=-++..|..-.-..+.
T Consensus 260 Ae~~iV~~Gs~~~~~~eav~~lr~----~--G~kvg~l~i~~~~PfP~~~i~~~l~~~k~ViVvE~n~~~Gq~g~l~~ev 333 (390)
T PRK08366 260 ADFVFMGMGSLMGTVKEAVDLLRK----E--GYKVGYAKVRWFRPFPKEELYEIAESVKGIAVLDRNFSFGQEGILFTEA 333 (390)
T ss_pred CCEEEEEeCccHHHHHHHHHHHHh----c--CCceeeEEEeeecCCCHHHHHHHHhcCCEEEEEeCCCCCCcccHHHHHH
Confidence 446899999999999998887754 3 4555555444322211 12444456778888886664223322222222
Q ss_pred HHHHhcCCCCCCCCCCceEEEEEecCcch--hHHHHHHHHHHH
Q 006697 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQY--EHFNKIGIVLDE 202 (635)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ld~ 202 (635)
...|.+... -.-+.-.|.|+|-+.+ ++.-++.+.+.+
T Consensus 334 ~~~l~~~~~----~~~~~~~i~g~gGr~~t~~~i~~~~~~~~~ 372 (390)
T PRK08366 334 KGALYNTDA----RPIMKNYIVGLGGRDFTVNDVKAIAEDMKK 372 (390)
T ss_pred HHHHhccCC----CCceeceEeCcCCccCCHHHHHHHHHHHHH
Confidence 222222110 0114567889988875 555555555443
No 187
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=33.91 E-value=1.4e+02 Score=26.97 Aligned_cols=55 Identities=15% Similarity=0.278 Sum_probs=38.5
Q ss_pred CeEEEEEECCCchHHHH--HHHHHHHHHhhhCCceEEEE------eCCCCCcCchHHHhhhccCCeEEEEE
Q 006697 84 TKVTVFYGTQTGTAEGF--AKALAEEIKARYEKAAVKVV------DLDDYAMDDEQYEEKLKKETLAFFMV 146 (635)
Q Consensus 84 ~~v~I~YgSqtGtte~~--A~~l~~~l~~~~~g~~~~v~------dl~~~~~~~~~~~~~l~~~~~vif~~ 146 (635)
|+++++-++.+|-|..| |+.|.+..++. |+.+++- -.+.+..++ +...+++|++.
T Consensus 3 mkivaVtacp~GiAht~lAAeaL~kAA~~~--G~~i~VE~qg~~g~~~~lt~~~------i~~Ad~VIia~ 65 (114)
T PRK10427 3 AYLVAVTACVSGVAHTYMAAERLEKLCQLE--KWGVKIETQGALGTENRLTDED------IRRADVVLLIT 65 (114)
T ss_pred ceEEEEeeCCCcHHHHHHHHHHHHHHHHHC--CCeEEEEecCCcCcCCCCCHHH------HHhCCEEEEEe
Confidence 67889999999988776 48888888877 7776633 112233333 77788888874
No 188
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.88 E-value=5.9e+02 Score=26.83 Aligned_cols=118 Identities=9% Similarity=0.071 Sum_probs=80.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCc--hHHHhhhccC---CeEEEEEecC--------
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD--EQYEEKLKKE---TLAFFMVATY-------- 149 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~--~~~~~~l~~~---~~vif~~sTy-------- 149 (635)
..++.|+....--.+..|++...+.+++- |+.++++.+.+...++ ...+.++.++ +.+++-.|=-
T Consensus 32 ~P~Laii~vg~d~as~~Yv~~k~k~a~~~--Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i 109 (284)
T PRK14190 32 VPGLAVILVGDDPASHSYVRGKKKAAEKV--GIYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAV 109 (284)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHH
Confidence 45677887777778899999988888887 8999999887542221 1123334333 3566666622
Q ss_pred -----------------------C-CCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHH
Q 006697 150 -----------------------G-DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELC 205 (635)
Q Consensus 150 -----------------------g-~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~ 205 (635)
| .+-.|-++..-++.|+.... .++|++++|+|=+ +-.++=+...|.
T Consensus 110 ~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~lL~~~~i---~l~Gk~vvViGrS-------~iVG~Pla~lL~ 179 (284)
T PRK14190 110 IERISPEKDVDGFHPINVGRMMLGQDTFLPCTPHGILELLKEYNI---DISGKHVVVVGRS-------NIVGKPVGQLLL 179 (284)
T ss_pred HhcCCccccccccCHhhHHHHhcCCCCCCCCCHHHHHHHHHHcCC---CCCCCEEEEECCC-------CccHHHHHHHHH
Confidence 1 12357777777888876543 3999999999832 335788888998
Q ss_pred HCCCEEe
Q 006697 206 KQGGARL 212 (635)
Q Consensus 206 ~lGa~~v 212 (635)
+.||+..
T Consensus 180 ~~~atVt 186 (284)
T PRK14190 180 NENATVT 186 (284)
T ss_pred HCCCEEE
Confidence 8898764
No 189
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.88 E-value=5.8e+02 Score=27.04 Aligned_cols=117 Identities=11% Similarity=0.013 Sum_probs=73.4
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCC-cCc-hHHHhhhccC---CeEEEEEecCC-------
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYA-MDD-EQYEEKLKKE---TLAFFMVATYG------- 150 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~-~~~-~~~~~~l~~~---~~vif~~sTyg------- 150 (635)
..++.|+.....-.+..|++...+.+++- |+.++++++.+.. .++ ...+.++.++ +.+++-.|=-.
T Consensus 32 ~p~LaiI~vgdd~as~~Yv~~k~k~a~~~--Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i 109 (297)
T PRK14186 32 PPGLAVLRVGDDPASAVYVRNKEKACARV--GIASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPL 109 (297)
T ss_pred CceEEEEEeCCChHHHHHHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHH
Confidence 45677888888888999999998888887 8999888885432 221 1133333332 35555555221
Q ss_pred ------------------------C-CCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHH
Q 006697 151 ------------------------D-GEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELC 205 (635)
Q Consensus 151 ------------------------~-G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~ 205 (635)
+ +-.|-++..-+++|+.... .++|++++|+|= .+-.++=+...|.
T Consensus 110 ~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~aii~lL~~~~i---~l~Gk~vvVIGr-------S~iVGkPla~lL~ 179 (297)
T PRK14186 110 LHAIDPDKDADGLHPLNLGRLVKGEPGLRSCTPAGVMRLLRSQQI---DIAGKKAVVVGR-------SILVGKPLALMLL 179 (297)
T ss_pred HhccCcccCcccCChhhHHHHhCCCCCCCCCCHHHHHHHHHHhCC---CCCCCEEEEECC-------CccchHHHHHHHH
Confidence 0 1135555555666655432 388888888872 2335677777888
Q ss_pred HCCCEE
Q 006697 206 KQGGAR 211 (635)
Q Consensus 206 ~lGa~~ 211 (635)
+.||+.
T Consensus 180 ~~~atV 185 (297)
T PRK14186 180 AANATV 185 (297)
T ss_pred HCCCEE
Confidence 778765
No 190
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.48 E-value=5.2e+02 Score=26.15 Aligned_cols=125 Identities=14% Similarity=0.035 Sum_probs=70.4
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCC---CcCc----hHHHhhhccCCeEEEEEecCCCCCCC
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDY---AMDD----EQYEEKLKKETLAFFMVATYGDGEPT 155 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~---~~~~----~~~~~~l~~~~~vif~~sTyg~G~~p 155 (635)
+|++.|+|.-+.| +++.+.|. .+ ++...++.+.++ -.+. +.++..++..+++| +- |--|
T Consensus 1 ~mki~vlt~g~yG--~R~~~nl~----~~--~f~~~~v~v~~~Pe~~~~fie~P~~~Lp~~~e~Di~v--a~----~lHP 66 (224)
T COG1810 1 MMKILVLTDGEYG--KRAVNNLA----CK--GFKNQFVAVKEYPEELPDFIEEPEDLLPKLPEADIVV--AY----GLHP 66 (224)
T ss_pred CcEEEEEeeccch--HHHHHhHh----hh--ccccceEEEEeccccccchhhCHHHhcCCCCCCCEEE--Ee----ccCc
Confidence 5789999998877 34444443 33 222333322222 1110 22455555556554 32 2345
Q ss_pred hhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecceeecCCCCchHHHHHHHHHH
Q 006697 156 DNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELV 235 (635)
Q Consensus 156 ~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~~~e~~f~~W~~~l 235 (635)
|.--..-+.. . ..+.+.-|.+.++.. +.-++|.+...++|++...|.-.++-..+- ..|.+.+
T Consensus 67 Dl~~~L~e~~-~-------~~~~~alIvp~~~~~-----g~rkqL~~~~~~~g~e~~~p~p~C~Le~~~----~p~i~~F 129 (224)
T COG1810 67 DLLLALPEKA-A-------EGGVKALIVPAEPPE-----GLRKQLKEFCEELGVEFEAPEPFCSLEPNE----NPHIDEF 129 (224)
T ss_pred cHHHHHHHHH-H-------hCCccEEEEecCCCh-----hHHHHHHHHhhhcceeeecCCccccCCCCC----ChHHHHH
Confidence 6544333333 1 457888999966555 677999999999999988887777543222 4555544
Q ss_pred HHH
Q 006697 236 WPE 238 (635)
Q Consensus 236 ~~~ 238 (635)
.+.
T Consensus 130 ~e~ 132 (224)
T COG1810 130 AER 132 (224)
T ss_pred HHH
Confidence 333
No 191
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=33.03 E-value=1.9e+02 Score=28.30 Aligned_cols=101 Identities=19% Similarity=0.215 Sum_probs=54.9
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEE---EEeCCCCCcCchHHHhhhccC--CeEEEEEecCCCCCCChhH
Q 006697 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVK---VVDLDDYAMDDEQYEEKLKKE--TLAFFMVATYGDGEPTDNA 158 (635)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~---v~dl~~~~~~~~~~~~~l~~~--~~vif~~sTyg~G~~p~na 158 (635)
.+..|+|..--+....+++.|.+ . |..+. ++.....+.. +.....+... +.++|.|+. .+
T Consensus 121 ~~~~il~~~g~~~~~~l~~~L~~----~--g~~v~~~~~Y~~~~~~~~-~~~~~~l~~~~~~~iiftS~~--------~v 185 (239)
T cd06578 121 KGKRILRPRGGRAREDLAEALRE----R--GAEVDEVEVYRTVPPDLD-AELLELLEEGAIDAVLFTSPS--------TV 185 (239)
T ss_pred CCCEEEEEcCcchhHHHHHHHHH----C--CCEEEEEEEEEEECCCCc-HHHHHHHHcCCCcEEEEeCHH--------HH
Confidence 45556666655555565555443 3 44333 3333222111 1122223333 344444433 57
Q ss_pred HHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeec
Q 006697 159 ARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (635)
Q Consensus 159 ~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~ 214 (635)
..|++++.+.. ...+.+.++.++| +...+.|++.|.+.+..
T Consensus 186 ~~f~~~~~~~~--~~~~~~~~~~aig-------------~~t~~~l~~~g~~~~~~ 226 (239)
T cd06578 186 RNLLELLGKEG--RALLKNVKIAAIG-------------PRTAEALRELGLKVVIV 226 (239)
T ss_pred HHHHHHHhhhh--hhhhcCCeEEEEC-------------HHHHHHHHHcCCCceee
Confidence 88888886532 1237778888887 67778888899876543
No 192
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=33.02 E-value=93 Score=25.92 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=31.2
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCC
Q 006697 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLD 123 (635)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~ 123 (635)
||+++.++--||+.-+|++|.+.+.++ |+++.+....
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~--gi~~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKEL--GIEVEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHT--TECEEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhc--cCceEEEEec
Confidence 689999999999999999999999988 7766655443
No 193
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=32.88 E-value=62 Score=28.06 Aligned_cols=35 Identities=11% Similarity=0.217 Sum_probs=28.9
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEE
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV 120 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~ 120 (635)
+++|+++.|+--+|+ -+++.+.+.++++ |+++++.
T Consensus 3 ~~~ILl~C~~G~sSS-~l~~k~~~~~~~~--gi~~~v~ 37 (95)
T TIGR00853 3 ETNILLLCAAGMSTS-LLVNKMNKAAEEY--GVPVKIA 37 (95)
T ss_pred ccEEEEECCCchhHH-HHHHHHHHHHHHC--CCcEEEE
Confidence 578999999988877 5899999999988 7776554
No 194
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=32.60 E-value=3.2e+02 Score=25.74 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=66.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhh-ccCCeEEEEEecCCCCCCChhHHHH
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKL-KKETLAFFMVATYGDGEPTDNAARF 161 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l-~~~~~vif~~sTyg~G~~p~na~~F 161 (635)
+.+|+|.==-+-|.... |+.++..|.+. |+++ ++.--+..-+ ++.... .+.--+|.+|+++|... .-+...
T Consensus 12 rprvlvak~GlDgHd~g-akvia~~l~d~--GfeV--i~~g~~~tp~-e~v~aA~~~dv~vIgvSsl~g~h~--~l~~~l 83 (143)
T COG2185 12 RPRVLVAKLGLDGHDRG-AKVIARALADA--GFEV--INLGLFQTPE-EAVRAAVEEDVDVIGVSSLDGGHL--TLVPGL 83 (143)
T ss_pred CceEEEeccCccccccc-hHHHHHHHHhC--CceE--EecCCcCCHH-HHHHHHHhcCCCEEEEEeccchHH--HHHHHH
Confidence 44555554446666665 67777888776 7554 4444333322 244433 45556778888886655 566777
Q ss_pred HHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecce
Q 006697 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLG 216 (635)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g 216 (635)
.+.|++.. ..... |++=|+-.-+. ...|++.|..+++..+
T Consensus 84 ve~lre~G-----~~~i~--v~~GGvip~~d--------~~~l~~~G~~~if~pg 123 (143)
T COG2185 84 VEALREAG-----VEDIL--VVVGGVIPPGD--------YQELKEMGVDRIFGPG 123 (143)
T ss_pred HHHHHHhC-----CcceE--EeecCccCchh--------HHHHHHhCcceeeCCC
Confidence 88887643 22222 44445555432 4578889999988765
No 195
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=32.54 E-value=2.3e+02 Score=30.60 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=49.1
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCe-EEEEEecCCCCCCChhHHH
Q 006697 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETL-AFFMVATYGDGEPTDNAAR 160 (635)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~-vif~~sTyg~G~~p~na~~ 160 (635)
+-++|.|+|.+-.|... .+.+.+.++.. |..+.+..+..-+.+-...+.++...+. +||+...+ +.+..
T Consensus 138 ~wk~vaily~~~~g~~~--l~~~~~~~~~~--g~~v~~~~~~~~~~d~~~~L~~ik~~~~~~iil~~~~------~~~~~ 207 (384)
T cd06393 138 KWRSATVVYDDSTGLIR--LQELIMAPSRY--NIRLKIRQLPTDSDDARPLLKEMKRGREFRIIFDCSH------QMAAQ 207 (384)
T ss_pred CCcEEEEEEeCchhHHH--HHHHHHhhhcc--CceEEEEECCCCchHHHHHHHHHhhcCceEEEEECCH------HHHHH
Confidence 56889999987655443 23566666555 5554433222111111235666665433 33333333 56777
Q ss_pred HHHHHhcCCCCCCCCCCceEEEEEecCc
Q 006697 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNR 188 (635)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~aVFGlGds 188 (635)
|++.+++.. +....|+ +++.+-
T Consensus 208 il~qa~~~g-----m~~~~~~-~~~~~~ 229 (384)
T cd06393 208 ILKQAMAMG-----MMTEYYH-FIFTTL 229 (384)
T ss_pred HHHHHHHhc-----cccCceE-EEEccC
Confidence 888877754 4445565 565444
No 196
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=32.46 E-value=67 Score=28.43 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=28.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEE
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV 120 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~ 120 (635)
+++|+++.|+-.+|+ -+|+.+.+.++++ |+++++.
T Consensus 1 MkkILlvCg~G~STS-lla~k~k~~~~e~--gi~~~i~ 35 (104)
T PRK09590 1 MKKALIICAAGMSSS-MMAKKTTEYLKEQ--GKDIEVD 35 (104)
T ss_pred CcEEEEECCCchHHH-HHHHHHHHHHHHC--CCceEEE
Confidence 357999999988666 9999999989888 7776553
No 197
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=32.15 E-value=38 Score=31.54 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=35.9
Q ss_pred eEEEEEecCcch---------hHHHHHHHHHHHHHHHCCCEEeecceeecCCCCchHHHHHH
Q 006697 179 KFGVFGLGNRQY---------EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 231 (635)
Q Consensus 179 ~~aVFGlGds~Y---------~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~~~e~~f~~W 231 (635)
+++|+-.||.-+ .-++..+..+.++|+++|++........|+.+.+.+.+.+|
T Consensus 2 rv~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~ 63 (144)
T TIGR00177 2 RVAVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKA 63 (144)
T ss_pred EEEEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHH
Confidence 677888887655 23456678899999999998765444555544455555555
No 198
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=31.77 E-value=1e+02 Score=25.56 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=24.3
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhh
Q 006697 85 KVTVFYGTQTGTAEGFAKALAEEIKAR 111 (635)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~l~~~l~~~ 111 (635)
+++|+.++-.|++.-++.+|.+.+.+.
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~ 27 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKEL 27 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHC
Confidence 488999999999999999999999755
No 199
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=31.43 E-value=56 Score=30.72 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=36.6
Q ss_pred ceEEEEEecCcch--hHHHHHHHHHHHHHHHCCCEEeecceeecCCCCchHHHHHH
Q 006697 178 LKFGVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAW 231 (635)
Q Consensus 178 ~~~aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~~~e~~f~~W 231 (635)
++++|+-.||..+ .-++..+..+.++|++.|++........||.+.+.+.+..|
T Consensus 1 ~~~~ii~~~~e~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~ 56 (152)
T cd00886 1 LRAAVLTVSDTRSAGEAEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEW 56 (152)
T ss_pred CEEEEEEEcCcccCCCCccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHH
Confidence 3688998999776 45677778899999999998665444445533333334333
No 200
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=31.11 E-value=64 Score=32.28 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=30.6
Q ss_pred eeEEEEEeEEecCCCCCCceEEEEEEecCCC---CccCCCCeEEEeccC
Q 006697 295 CRVNVAVRRELHKPDSDRSCIHLEFDVSGTG---ITYETGDHVGVYVEN 340 (635)
Q Consensus 295 ~~a~V~~~~~L~~~~~~r~~~hie~di~~~~---l~Y~~GD~l~I~p~N 340 (635)
+.++|+..+.++ .+++.++|..+... +.|+||.++.|.++.
T Consensus 2 ~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~ 45 (241)
T cd06214 2 HPLTVAEVVRET-----ADAVSITFDVPEELRDAFRYRPGQFLTLRVPI 45 (241)
T ss_pred ceEEEEEEEecC-----CCeEEEEEecCcccCCCCCcCCCCeEEEEeec
Confidence 357788888775 36778888876432 589999999999763
No 201
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=30.77 E-value=3.9e+02 Score=23.86 Aligned_cols=108 Identities=10% Similarity=-0.052 Sum_probs=63.0
Q ss_pred EEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCC-CcCchHHHhhhccCCe-EEEEEecCCCCCCChhHHHHHHHH
Q 006697 88 VFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDY-AMDDEQYEEKLKKETL-AFFMVATYGDGEPTDNAARFYKWF 165 (635)
Q Consensus 88 I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~-~~~~~~~~~~l~~~~~-vif~~sTyg~G~~p~na~~F~~~L 165 (635)
|+.++--|--..+...+...+-+.. | .+++++-.. ..++ +.....+.+. +|.+|++. +.....+.++.+.|
T Consensus 2 vv~~~~~gd~H~lG~~~~~~~l~~~-G--~~vi~lG~~vp~e~--~~~~a~~~~~d~V~iS~~~--~~~~~~~~~~~~~L 74 (122)
T cd02071 2 ILVAKPGLDGHDRGAKVIARALRDA-G--FEVIYTGLRQTPEE--IVEAAIQEDVDVIGLSSLS--GGHMTLFPEVIELL 74 (122)
T ss_pred EEEEecCCChhHHHHHHHHHHHHHC-C--CEEEECCCCCCHHH--HHHHHHHcCCCEEEEcccc--hhhHHHHHHHHHHH
Confidence 4556666777777777777665443 4 556666543 3333 4444545544 55555554 45556777788888
Q ss_pred hcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeeccee
Q 006697 166 TEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 217 (635)
Q Consensus 166 ~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~ 217 (635)
++.. +.+.++.+=| . . .+...++++++|...+...+.
T Consensus 75 ~~~~-----~~~i~i~~GG--~-~-------~~~~~~~~~~~G~d~~~~~~~ 111 (122)
T cd02071 75 RELG-----AGDILVVGGG--I-I-------PPEDYELLKEMGVAEIFGPGT 111 (122)
T ss_pred HhcC-----CCCCEEEEEC--C-C-------CHHHHHHHHHCCCCEEECCCC
Confidence 7742 3334433333 2 1 244457888999988876653
No 202
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=30.48 E-value=3.9e+02 Score=28.12 Aligned_cols=135 Identities=9% Similarity=0.020 Sum_probs=68.0
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhh-hCCceEEEEeCCCCC-cCchHHHhh-----hc-cCCeEEEEEecCCCCCCC
Q 006697 84 TKVTVFYGTQTGTAEGFAKALAEEIKAR-YEKAAVKVVDLDDYA-MDDEQYEEK-----LK-KETLAFFMVATYGDGEPT 155 (635)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~l~~~l~~~-~~g~~~~v~dl~~~~-~~~~~~~~~-----l~-~~~~vif~~sTyg~G~~p 155 (635)
+.++++||....--+.+++.|.+.+... ...+.+..+|..+.+ ..+ ++.+ +. ..++|++--+.+..+...
T Consensus 1 ~~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~~~~d~~~~~~~~~--~~~~~~t~pff~~~rlVvv~~~~~~~~~~~ 78 (326)
T PRK07452 1 MPIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDDADQAIQ--ALNEAMTPPFGSGGRLVWLKNSPLCQGCSE 78 (326)
T ss_pred CCEEEEEcChHHHHHHHHHHHHHHhCCchhhhcchhhcCCccchHHHH--HHHHhcCCCCCCCceEEEEeCchhhccCCH
Confidence 4689999999999999998888766321 012334444444443 111 3332 22 234444444444333333
Q ss_pred hhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecceeecCCCCchHHHHHHHHHH
Q 006697 156 DNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWRELV 235 (635)
Q Consensus 156 ~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~~~e~~f~~W~~~l 235 (635)
+....+.+++.+. ..-.+-||-..+. .. ..+++.+++++.|...-... .. .-.++++..|..+.
T Consensus 79 ~~~~~L~~~l~~~-------~~~~~li~~~~~~----~d-~r~k~~k~l~k~~~~~~~~~--~~--~~~~~~l~~~i~~~ 142 (326)
T PRK07452 79 ELLAELERTLPLI-------PENTHLLLTNTKK----PD-GRLKSTKLLQKLAEEKEFSL--IP--PWDTEGLKQLVERT 142 (326)
T ss_pred HHHHHHHHHHcCC-------CCCcEEEEEeCCC----cc-hHHHHHHHHHHceeEEEecC--CC--cccHHHHHHHHHHH
Confidence 4455677788652 2234555542211 11 12455666777654222211 11 11235578887654
Q ss_pred H
Q 006697 236 W 236 (635)
Q Consensus 236 ~ 236 (635)
.
T Consensus 143 ~ 143 (326)
T PRK07452 143 A 143 (326)
T ss_pred H
Confidence 3
No 203
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=30.47 E-value=92 Score=30.62 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=31.5
Q ss_pred eEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCC
Q 006697 296 RVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENC 341 (635)
Q Consensus 296 ~a~V~~~~~L~~~~~~r~~~hie~di~~~~l~Y~~GD~l~I~p~N~ 341 (635)
.++|+..++++. +++++.|+.++ .+.|+||.++.|..+++
T Consensus 2 ~~~v~~~~~~~~-----~~~~~~l~~~~-~~~~~pGQ~v~l~~~~~ 41 (218)
T cd06196 2 TVTLLSIEPVTH-----DVKRLRFDKPE-GYDFTPGQATEVAIDKP 41 (218)
T ss_pred ceEEEEEEEcCC-----CeEEEEEcCCC-cCCCCCCCEEEEEeeCC
Confidence 467888888763 68899998765 58999999999986543
No 204
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=30.26 E-value=2.5e+02 Score=30.46 Aligned_cols=91 Identities=9% Similarity=0.107 Sum_probs=54.4
Q ss_pred CCCeEEEEEECCCchHHH---HHHHHHHHHHhhhCCceEEEEeCCCC-CcCchHHHhhhccCCeEEEEEecCCCCCCChh
Q 006697 82 GKTKVTVFYGTQTGTAEG---FAKALAEEIKARYEKAAVKVVDLDDY-AMDDEQYEEKLKKETLAFFMVATYGDGEPTDN 157 (635)
Q Consensus 82 ~~~~v~I~YgSqtGtte~---~A~~l~~~l~~~~~g~~~~v~dl~~~-~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~n 157 (635)
+-++|.|+|.+.. ..+. .++.+.+.++.. |+.+......+. +.+-..++.++.+..-+|+++..+ +.
T Consensus 136 ~W~~vaiiy~~~~-~~~~~~~~~~~l~~~~~~~--gi~v~~~~~~~~~~~d~~~~l~~ik~~~rvii~~~~~------~~ 206 (387)
T cd06386 136 HWRSALLVYEDDK-QERNCYFTLEGVHHVFQEE--GYHMSIYPFDETKDLDLDEIIRAIQASERVVIMCAGA------DT 206 (387)
T ss_pred CCeEEEEEEEcCC-CCccceehHHHHHHHHHhc--CceEEEEecCCCCcccHHHHHHHHHhcCcEEEEecCH------HH
Confidence 5678999986432 2233 277788888776 766655443321 112234666676665566665544 57
Q ss_pred HHHHHHHHhcCCCCCCCCCCceEEEEEec
Q 006697 158 AARFYKWFTEGNDRGPWLQQLKFGVFGLG 186 (635)
Q Consensus 158 a~~F~~~L~~~~~~~~~l~~~~~aVFGlG 186 (635)
+..|+....+.. +.+-.|+.+.++
T Consensus 207 ~~~ll~~A~~~g-----m~~~~yv~i~~d 230 (387)
T cd06386 207 IRSIMLAAHRRG-----LTSGDYIFFNIE 230 (387)
T ss_pred HHHHHHHHHHcC-----CCCCCEEEEEEe
Confidence 787888776654 445567666664
No 205
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=30.20 E-value=98 Score=24.72 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=24.8
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCce
Q 006697 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAA 116 (635)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~ 116 (635)
+++++.++-.|++.-++++|.+.+.+. +..
T Consensus 1 ~il~vc~~G~~~s~~l~~~l~~~~~~~--~~~ 30 (84)
T cd00133 1 KILVVCGSGIGSSSMLAEKLEKAAKEL--GIE 30 (84)
T ss_pred CEEEECCCcHhHHHHHHHHHHHHHHHC--CCe
Confidence 467888888899999999999999876 553
No 206
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=30.18 E-value=68 Score=31.69 Aligned_cols=31 Identities=32% Similarity=0.501 Sum_probs=26.0
Q ss_pred CCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEe
Q 006697 174 WLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (635)
Q Consensus 174 ~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v 212 (635)
.+++++++|.|+|+ +++.+-+.|.+.|++.+
T Consensus 25 ~l~gk~v~I~G~G~--------vG~~~A~~L~~~G~~Vv 55 (200)
T cd01075 25 SLEGKTVAVQGLGK--------VGYKLAEHLLEEGAKLI 55 (200)
T ss_pred CCCCCEEEEECCCH--------HHHHHHHHHHHCCCEEE
Confidence 48999999999773 57788889999999765
No 207
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=30.00 E-value=5.4e+02 Score=25.24 Aligned_cols=117 Identities=16% Similarity=0.181 Sum_probs=62.9
Q ss_pred CeEEEE----EECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccC-CeEEEEEecCCCCCCChhH
Q 006697 84 TKVTVF----YGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKE-TLAFFMVATYGDGEPTDNA 158 (635)
Q Consensus 84 ~~v~I~----YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~-~~vif~~sTyg~G~~p~na 158 (635)
++|.|+ +-+.+|--|.+|+.|+..+.++ |+++.|+...+..... ...+ .+=++-.++-..|..-.-.
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~--g~~v~Vyc~~~~~~~~------~~~y~gv~l~~i~~~~~g~~~si~ 73 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSK--GIDVTVYCRSDYYPYK------EFEYNGVRLVYIPAPKNGSAESII 73 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcC--CceEEEEEccCCCCCC------CcccCCeEEEEeCCCCCCchHHHH
Confidence 445554 3355899999999999999988 8999999776554332 2333 3445555776666322222
Q ss_pred HHHHHHHhcCCC-CCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeec
Q 006697 159 ARFYKWFTEGND-RGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (635)
Q Consensus 159 ~~F~~~L~~~~~-~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~ 214 (635)
-+|+..+..... ..+..+.--+-++|.+...+ .--+-+.|...|.+.+.-
T Consensus 74 yd~~sl~~al~~~~~~~~~~~ii~ilg~~~g~~------~~~~~r~~~~~g~~v~vN 124 (185)
T PF09314_consen 74 YDFLSLLHALRFIKQDKIKYDIILILGYGIGPF------FLPFLRKLRKKGGKVVVN 124 (185)
T ss_pred HHHHHHHHHHHHHhhccccCCEEEEEcCCccHH------HHHHHHhhhhcCCcEEEC
Confidence 222222211100 00002222456666442222 234455666778776653
No 208
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=29.78 E-value=3.8e+02 Score=28.58 Aligned_cols=91 Identities=13% Similarity=0.103 Sum_probs=52.8
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEE-eCCCC--CcCchHHHhhhccCCeEEEEEecCCCCCCChhH
Q 006697 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV-DLDDY--AMDDEQYEEKLKKETLAFFMVATYGDGEPTDNA 158 (635)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~-dl~~~--~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na 158 (635)
+.+++.|+|....+.....++.+.+.+++. |.++... .+..- ..+-...+.++....-+|+++... +.+
T Consensus 136 ~~~~v~ii~~~~~~~g~~~~~~~~~~~~~~--G~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~vii~~~~~------~~~ 207 (389)
T cd06352 136 NWHVAVVVYSDDSENCFFTLEALEAALREF--NLTVSHVVFMEDNSGAEDLLEILQDIKRRSRIIIMCGSS------EDV 207 (389)
T ss_pred CceEEEEEEecCCccHHHHHHHHHHHHHhc--CCeEEEEEEecCCccchhHHHHHHHhhhcceEEEEECCH------HHH
Confidence 356788888777656667788899998776 6554322 12211 111122555565555344443332 467
Q ss_pred HHHHHHHhcCCCCCCCCCCceEEEEEe
Q 006697 159 ARFYKWFTEGNDRGPWLQQLKFGVFGL 185 (635)
Q Consensus 159 ~~F~~~L~~~~~~~~~l~~~~~aVFGl 185 (635)
..|++.+.... +.+..+.++|.
T Consensus 208 ~~~l~q~~~~g-----~~~~~~~~i~~ 229 (389)
T cd06352 208 RELLLAAHDLG-----LTSGDYVFILI 229 (389)
T ss_pred HHHHHHHHHcC-----CCCCcEEEEEE
Confidence 77888887754 44456777764
No 209
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=29.56 E-value=1.2e+02 Score=30.09 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=32.4
Q ss_pred eeEEEEEeEEecCCCCCCceEEEEEEecC-CCCccCCCCeEEEeccC
Q 006697 295 CRVNVAVRRELHKPDSDRSCIHLEFDVSG-TGITYETGDHVGVYVEN 340 (635)
Q Consensus 295 ~~a~V~~~~~L~~~~~~r~~~hie~di~~-~~l~Y~~GD~l~I~p~N 340 (635)
|.++|+..+.++. +++.|.|+.++ ....|+||.|+.|..++
T Consensus 2 ~~~~V~~~~~~t~-----~~~~l~l~~~~~~~~~~~pGQ~v~l~~~~ 43 (228)
T cd06209 2 FEATVTEVERLSD-----STIGLTLELDEAGALAFLPGQYVNLQVPG 43 (228)
T ss_pred eeEEEEEEEEcCC-----CeEEEEEEcCCCCcCccCCCCEEEEEeCC
Confidence 4588888888763 68888898775 35789999999998654
No 210
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=29.51 E-value=2.9e+02 Score=30.85 Aligned_cols=62 Identities=13% Similarity=0.087 Sum_probs=41.2
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCC
Q 006697 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYG 150 (635)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg 150 (635)
.+|+|-|.+.. +++.+++.++..|.+. |+ +|+++.-...--..+...-.+...-|.++++++
T Consensus 43 ~~VvVg~D~R~-ss~~l~~a~~~gL~s~--G~--~V~~~g~~pTP~~~~a~~~~~~~gGi~ITaSHn 104 (448)
T PRK14315 43 HRVVIGKDTRL-SGYMIENALVAGFTSV--GM--DVLLLGPIPTPAVAMLTRSMRADLGVMISASHN 104 (448)
T ss_pred ceEEEEeCCCC-CHHHHHHHHHHHHHHC--CC--eEEEeCCcccHHHHHHHHhcCCCEEEEEEcCCC
Confidence 36999999988 8999999999999987 75 456664332221112111123456788888774
No 211
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.37 E-value=6.9e+02 Score=26.27 Aligned_cols=118 Identities=8% Similarity=0.046 Sum_probs=75.8
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCc--hHHHhhhccC---CeEEEEEecC--------
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD--EQYEEKLKKE---TLAFFMVATY-------- 149 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~--~~~~~~l~~~---~~vif~~sTy-------- 149 (635)
..++.|+....--.+..|++...+.+++- |+.++++.+.+...++ ...+.++.++ +.+++-.|=-
T Consensus 31 ~P~La~I~vg~d~as~~Yv~~k~k~~~~~--Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i 108 (282)
T PRK14180 31 TPKLVAIIVGNDPASKTYVASKEKACAQV--GIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNV 108 (282)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHH
Confidence 46777888888888899999888888877 8888888886543222 1123333333 2455544421
Q ss_pred -----------------------C--CCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHH
Q 006697 150 -----------------------G--DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEEL 204 (635)
Q Consensus 150 -----------------------g--~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L 204 (635)
| .+-.|.++..-+++|+.... .++|+++.|+|=+ +-.++=+...|
T Consensus 109 ~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~PcTp~aii~lL~~y~i---~l~Gk~vvViGrS-------~~VGkPla~lL 178 (282)
T PRK14180 109 IYSIKPEKDVDGFHPTNVGRLQLRDKKCLESCTPKGIMTMLREYGI---KTEGAYAVVVGAS-------NVVGKPVSQLL 178 (282)
T ss_pred HhhcCccccccccChhhHHHHhcCCCCCcCCCCHHHHHHHHHHhCC---CCCCCEEEEECCC-------CcchHHHHHHH
Confidence 1 12256666666777765432 3888999998832 33467788888
Q ss_pred HHCCCEEe
Q 006697 205 CKQGGARL 212 (635)
Q Consensus 205 ~~lGa~~v 212 (635)
.+.||+..
T Consensus 179 ~~~~ATVt 186 (282)
T PRK14180 179 LNAKATVT 186 (282)
T ss_pred HHCCCEEE
Confidence 88888653
No 212
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=29.21 E-value=38 Score=27.87 Aligned_cols=28 Identities=18% Similarity=0.132 Sum_probs=23.8
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhh
Q 006697 84 TKVTVFYGTQTGTAEGFAKALAEEIKAR 111 (635)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~l~~~l~~~ 111 (635)
.+++|+.++-.|++.-++.+|.+.+...
T Consensus 1 ~kilivC~~G~~~s~~l~~~l~~~~~~~ 28 (85)
T cd05568 1 KKALVVCPSGIGTSRLLKSKLKKLFPEI 28 (85)
T ss_pred CeEEEECCCCHHHHHHHHHHHHHHCCCc
Confidence 3689999999999999999999888643
No 213
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=28.89 E-value=4.2e+02 Score=29.22 Aligned_cols=107 Identities=20% Similarity=0.167 Sum_probs=56.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcC-chHHHhhhccCCeEEEEEecCCCCCCChhHHHH
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMD-DEQYEEKLKKETLAFFMVATYGDGEPTDNAARF 161 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~-~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F 161 (635)
..-++|.|||.+|+++...+.+.++ |.++-++-+.-+.+- .+.+..-+.+.+.|+++=-++..|..-.-..+.
T Consensus 262 Ae~viV~~GS~~~~~keav~~LR~~------G~kVGllri~~~rPFP~~~i~~~l~~~k~ViVvE~n~s~g~~g~l~~dV 335 (394)
T PRK08367 262 AEIIFVTMGSLAGTLKEFVDKLREE------GYKVGAAKLTVYRPFPVEEIRALAKKAKVLAFLEKNISFGLGGAVFADA 335 (394)
T ss_pred CCEEEEEeCccHHHHHHHHHHHHhc------CCcceeEEEeEecCCCHHHHHHHHccCCEEEEEeCCCCCCCCCcHHHHH
Confidence 4568899999999999988776543 444544444333211 112333345667777774443223211223333
Q ss_pred HHHHhcCCCCCCCCCCceEEEEEecCcch--hHHHHHHHH
Q 006697 162 YKWFTEGNDRGPWLQQLKFGVFGLGNRQY--EHFNKIGIV 199 (635)
Q Consensus 162 ~~~L~~~~~~~~~l~~~~~aVFGlGds~Y--~~f~~~~k~ 199 (635)
..-|.... . -..+.-.+.|||-+.. +.+-.+.+.
T Consensus 336 ~aal~~~~-~---~~~v~~~~~glgg~~~~~~~~~~~~~~ 371 (394)
T PRK08367 336 SAALVNES-E---KPKILDFIIGLGGRDVTFKQLDEALEI 371 (394)
T ss_pred HHHHhccC-C---CCeEEEEEeCCCCCCCCHHHHHHHHHH
Confidence 33332211 0 1123568889998775 454444433
No 214
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=28.63 E-value=1.3e+02 Score=30.45 Aligned_cols=42 Identities=19% Similarity=0.304 Sum_probs=33.0
Q ss_pred CeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCC
Q 006697 294 PCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENC 341 (635)
Q Consensus 294 p~~a~V~~~~~L~~~~~~r~~~hie~di~~~~l~Y~~GD~l~I~p~N~ 341 (635)
|..++|+..++++. ++++++|+.+ ..+.|+||.|+.|..++.
T Consensus 4 ~~~~~V~~~~~~t~-----d~~~l~l~~~-~~~~~~pGQ~v~l~~~~~ 45 (250)
T PRK00054 4 PENMKIVENKEIAP-----NIYTLVLDGE-KVFDMKPGQFVMVWVPGV 45 (250)
T ss_pred ceEEEEEEEEEecC-----CeEEEEEeCc-cccCCCCCcEEEEEeCCC
Confidence 45688988888873 6788888854 468899999999986654
No 215
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=28.58 E-value=95 Score=33.70 Aligned_cols=78 Identities=23% Similarity=0.187 Sum_probs=49.0
Q ss_pred cCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchH-HHhhhccCCeEEEEEecCCCCCCChhHH
Q 006697 81 AGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQ-YEEKLKKETLAFFMVATYGDGEPTDNAA 159 (635)
Q Consensus 81 ~~~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~-~~~~l~~~~~vif~~sTyg~G~~p~na~ 159 (635)
++..-++|.|||+++.+.+.|+.|.+ . |+++.++++..+.+=+.+ +...+.+.+.+|++=-.+-.|.. +.
T Consensus 232 ~G~di~Iia~Gs~~~~aleAa~~L~~----~--Gi~v~vI~~~~l~Pld~e~i~~~~~~~~~IvvvEE~~~~GGl---G~ 302 (355)
T PTZ00182 232 EGKDVTIVGYGSQVHVALKAAEELAK----E--GISCEVIDLRSLRPWDRETIVKSVKKTGRCVIVHEAPPTCGI---GA 302 (355)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHHHh----C--CCcEEEEEEeeCCCCCHHHHHHHHhcCCEEEEEEeCCCCCCH---HH
Confidence 44555678899999988888877643 4 788888888766554432 44556677777776444434432 23
Q ss_pred HHHHHHhc
Q 006697 160 RFYKWFTE 167 (635)
Q Consensus 160 ~F~~~L~~ 167 (635)
...+++.+
T Consensus 303 ~Va~~l~e 310 (355)
T PTZ00182 303 EIAAQIME 310 (355)
T ss_pred HHHHHHHH
Confidence 34445544
No 216
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=28.27 E-value=1.8e+02 Score=34.22 Aligned_cols=58 Identities=19% Similarity=0.154 Sum_probs=39.2
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEE
Q 006697 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFM 145 (635)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~ 145 (635)
+..-++|.||++...|.+.|+.|+ +. |+.++|+|+.-..+-|..++.++.+...++++
T Consensus 504 G~ditIva~G~~v~~aleAa~~L~----~~--Gi~v~VId~~~lkPlD~~~i~sv~k~~~vvvv 561 (641)
T PRK12571 504 GPDVAILSVGAHLHECLDAADLLE----AE--GISVTVADPRFVKPLDEALTDLLVRHHIVVIV 561 (641)
T ss_pred CCCEEEEEecHHHHHHHHHHHHHH----hc--CCCEEEEEcCcCCCcCHHHHHHHhhhCCEEEE
Confidence 455677888888887777776653 35 78899999876555555566666655444444
No 217
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=27.82 E-value=1.4e+02 Score=26.27 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=26.2
Q ss_pred CeEEEEEECCCchHHHH--HHHHHHHHHhhhCCceEEEEeCCC
Q 006697 84 TKVTVFYGTQTGTAEGF--AKALAEEIKARYEKAAVKVVDLDD 124 (635)
Q Consensus 84 ~~v~I~YgSqtGtte~~--A~~l~~~l~~~~~g~~~~v~dl~~ 124 (635)
|.|.|++.|.||+.+-- -+++..-|.++ +++.+.+|+..
T Consensus 1 m~I~vy~ss~sg~~~ikk~q~~v~~iL~a~--kI~fe~vDIa~ 41 (99)
T PF04908_consen 1 MVIKVYISSISGSREIKKRQQRVLMILEAK--KIPFEEVDIAM 41 (99)
T ss_dssp -SEEEEE-SS-SSHHHHHHHHHHHHHHHHT--T--EEEEETTT
T ss_pred CEEEEEEecccCCHHHHHHHHHHHHHHHHc--CCCcEEEeCcC
Confidence 45889999999997543 34666777777 78888899886
No 218
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=27.77 E-value=1.3e+02 Score=29.93 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=30.9
Q ss_pred eEEEEEeEEecCCCCCCceEEEEEEecCCC-CccCCCCeEEEeccC
Q 006697 296 RVNVAVRRELHKPDSDRSCIHLEFDVSGTG-ITYETGDHVGVYVEN 340 (635)
Q Consensus 296 ~a~V~~~~~L~~~~~~r~~~hie~di~~~~-l~Y~~GD~l~I~p~N 340 (635)
.++|+.+++++ .+++.+.|+.++.. ..|+||+|+.|..++
T Consensus 3 ~~~v~~~~~~~-----~~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 43 (235)
T cd06217 3 VLRVTEIIQET-----PTVKTFRLAVPDGVPPPFLAGQHVDLRLTA 43 (235)
T ss_pred eEEEEEEEecC-----CCeEEEEEECCCCCcCCcCCcCeEEEEEec
Confidence 36788888775 36888888877632 789999999998653
No 219
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=27.51 E-value=1.4e+02 Score=29.94 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=33.0
Q ss_pred CeeEEEEEeEEecCCCCCCceEEEEEEecCCC-CccCCCCeEEEeccC
Q 006697 294 PCRVNVAVRRELHKPDSDRSCIHLEFDVSGTG-ITYETGDHVGVYVEN 340 (635)
Q Consensus 294 p~~a~V~~~~~L~~~~~~r~~~hie~di~~~~-l~Y~~GD~l~I~p~N 340 (635)
++.++|...++++. +++.+.|..+... ..|+||.++.|..++
T Consensus 6 ~~~~~v~~~~~~t~-----~~~~~~l~~~~~~~~~~~pGQ~v~l~~~~ 48 (238)
T cd06211 6 DFEGTVVEIEDLTP-----TIKGVRLKLDEPEEIEFQAGQYVNLQAPG 48 (238)
T ss_pred EEeEEEEEEEecCC-----CEEEEEEEcCCCCcCccCCCCeEEEEcCC
Confidence 56789998888873 6788888876532 589999999998654
No 220
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=27.34 E-value=1.6e+02 Score=27.16 Aligned_cols=62 Identities=18% Similarity=0.278 Sum_probs=37.0
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeC---CCCCcCc-h-HHHhhhccCCeEEEEEe
Q 006697 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDL---DDYAMDD-E-QYEEKLKKETLAFFMVA 147 (635)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl---~~~~~~~-~-~~~~~l~~~~~vif~~s 147 (635)
++|.|.|+.-+-.=.+....|++.|++.+| ++|. +|+ .+....+ . =+...+.+.+.||+++|
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~g-~~V~-lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S 67 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNCG-IDVI-LDQWELNEIARQGPPRWMERQIREADKVLIVCS 67 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhccC-Ccee-ecHHhhcccccCCHHHHHHHHHhcCCEEEEEec
Confidence 479999999776667888899999987544 4432 233 2211111 1 12233556666666666
No 221
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.20 E-value=7.4e+02 Score=25.93 Aligned_cols=48 Identities=15% Similarity=0.048 Sum_probs=35.9
Q ss_pred CChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEE
Q 006697 154 PTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGAR 211 (635)
Q Consensus 154 ~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~ 211 (635)
.|.+...|++.|+.... .++|+++.|+|-| +-+++-+...|.+.||+.
T Consensus 139 ~p~T~~gii~~L~~~~i---~l~Gk~vvViG~g-------g~vGkpia~~L~~~gatV 186 (283)
T PRK14192 139 GSATPAGIMRLLKAYNI---ELAGKHAVVVGRS-------AILGKPMAMMLLNANATV 186 (283)
T ss_pred cCCcHHHHHHHHHHcCC---CCCCCEEEEECCc-------HHHHHHHHHHHHhCCCEE
Confidence 35555779999876543 3999999999954 235788888899999953
No 222
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.16 E-value=7.6e+02 Score=26.01 Aligned_cols=119 Identities=14% Similarity=0.100 Sum_probs=72.4
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCc--hHHHhhhccC---CeEEEEEecC--------
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD--EQYEEKLKKE---TLAFFMVATY-------- 149 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~--~~~~~~l~~~---~~vif~~sTy-------- 149 (635)
..++.|+....--.+..|++...+.+++- |+.++++.+.+-..++ ...+.++.++ +.+++-.|--
T Consensus 32 ~P~Laii~vg~d~as~~Yv~~k~k~~~~~--Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i 109 (284)
T PRK14179 32 VPGLVVILVGDNPASQVYVRNKERSALAA--GFKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKI 109 (284)
T ss_pred CceEEEEEeCCChhHHHHHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHH
Confidence 34666776666667778888777777776 7878777776432221 1122233322 2444444421
Q ss_pred -----------------------C-CCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHH
Q 006697 150 -----------------------G-DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELC 205 (635)
Q Consensus 150 -----------------------g-~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~ 205 (635)
| .+-.|-++..-++.|+... ..++|++++|+|.++ -+++=+...|.
T Consensus 110 ~~~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~avi~lL~~~~---i~l~Gk~v~vIG~S~-------ivG~Pla~lL~ 179 (284)
T PRK14179 110 LLAIDPKKDVDGFHPMNTGHLWSGRPVMIPCTPAGIMEMFREYN---VELEGKHAVVIGRSN-------IVGKPMAQLLL 179 (284)
T ss_pred HhccCccccccccCHhhHHHHhCCCCCCcCCCHHHHHHHHHHhC---CCCCCCEEEEECCCC-------cCcHHHHHHHH
Confidence 1 1124566666666666543 349999999999643 34678888898
Q ss_pred HCCCEEee
Q 006697 206 KQGGARLV 213 (635)
Q Consensus 206 ~lGa~~v~ 213 (635)
+.|++...
T Consensus 180 ~~gatVtv 187 (284)
T PRK14179 180 DKNATVTL 187 (284)
T ss_pred HCCCEEEE
Confidence 89987653
No 223
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=27.14 E-value=2.1e+02 Score=29.79 Aligned_cols=42 Identities=10% Similarity=0.137 Sum_probs=30.0
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCC
Q 006697 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDY 125 (635)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~ 125 (635)
..++|.|+|.+.+-++....+.+.+.+++. |+++..+.+.+.
T Consensus 130 ~~k~igvl~~~~~~~~~~~~~~~~~~a~~~--g~~l~~~~v~~~ 171 (294)
T PF04392_consen 130 DAKRIGVLYDPSEPNSVAQIEQLRKAAKKL--GIELVEIPVPSS 171 (294)
T ss_dssp T--EEEEEEETT-HHHHHHHHHHHHHHHHT--T-EEEEEEESSG
T ss_pred CCCEEEEEecCCCccHHHHHHHHHHHHHHc--CCEEEEEecCcH
Confidence 578999999999988888888888888766 777666665543
No 224
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=27.08 E-value=1.6e+02 Score=30.51 Aligned_cols=86 Identities=13% Similarity=0.091 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHhhhCCceEEEEeCCC--CCcCchHHHhhh-c-cCCe-EEEEEecCCCCCCChhHHHHHHHHhc-CC
Q 006697 96 TAEGFAKALAEEIKARYEKAAVKVVDLDD--YAMDDEQYEEKL-K-KETL-AFFMVATYGDGEPTDNAARFYKWFTE-GN 169 (635)
Q Consensus 96 tte~~A~~l~~~l~~~~~g~~~~v~dl~~--~~~~~~~~~~~l-~-~~~~-vif~~sTyg~G~~p~na~~F~~~L~~-~~ 169 (635)
+..++|++|++.+.+. |+.+...|-+. +|..--.-+.-+ . ..++ +|.++-+. ..++...-+|=+.|.+ ..
T Consensus 88 g~~eLA~~i~~~~~~~--gi~~~~~~~~~~~lDHG~~vPL~~l~~~~~~iPvV~~s~~~--~~~~~~~~~lG~al~~~l~ 163 (271)
T cd07373 88 SDTALAEACVTACPEH--GVHARGVDYDGFPIDTGTITACTLMGIGTEALPLVVASNNL--YHSGEITEKLGAIAADAAK 163 (271)
T ss_pred CCHHHHHHHHHHHHHC--CCcEEEecCCCCCCcchhHHHHHHHcccCCCCCEEEEEeCC--CCCHHHHHHHHHHHHHHHH
Confidence 4677899999999887 77776555533 333221111112 1 1222 44433322 2233333334444543 11
Q ss_pred CCCCCCCCceEEEEEecCcch
Q 006697 170 DRGPWLQQLKFGVFGLGNRQY 190 (635)
Q Consensus 170 ~~~~~l~~~~~aVFGlGds~Y 190 (635)
-.+++++|+|+||-+.
T Consensus 164 -----~~~~rV~iIgSG~lSH 179 (271)
T cd07373 164 -----DQNKRVAVVGVGGLSG 179 (271)
T ss_pred -----HcCCeEEEEEeccccc
Confidence 1248999999998885
No 225
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=26.98 E-value=59 Score=32.67 Aligned_cols=41 Identities=22% Similarity=0.164 Sum_probs=31.5
Q ss_pred eeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccC
Q 006697 295 CRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 340 (635)
Q Consensus 295 ~~a~V~~~~~L~~~~~~r~~~hie~di~~~~l~Y~~GD~l~I~p~N 340 (635)
+.++|+...+++. ++++++|+.++....|+||.++-|..++
T Consensus 18 ~~~~v~~i~~~~~-----~~~~i~l~~~~~~~~~~pGQ~i~l~~~~ 58 (243)
T cd06216 18 LRARVVAVRPETA-----DMVTLTLRPNRGWPGHRAGQHVRLGVEI 58 (243)
T ss_pred eEEEEEEEEEcCC-----CcEEEEEecCCCCCCcCCCceEEEEEEE
Confidence 4578888877753 6788888876545689999999998653
No 226
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=26.81 E-value=4.4e+02 Score=29.35 Aligned_cols=104 Identities=23% Similarity=0.295 Sum_probs=59.8
Q ss_pred EEEECCCc-----hHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHH
Q 006697 88 VFYGTQTG-----TAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFY 162 (635)
Q Consensus 88 I~YgSqtG-----tte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~ 162 (635)
.+|+++.+ +++++|+.|+++|++. |++ .++++||.| ..+....-..
T Consensus 307 ~fy~t~G~gt~~~~a~~~g~eIa~~Lk~d--gVD-------------------------AvILtstCg--tCtrcga~m~ 357 (431)
T TIGR01917 307 YFYSTTGNGTAVANSKQFAKEFSKELLAA--GVD-------------------------AVILTSTUG--TCTRCGATMV 357 (431)
T ss_pred eeEEccCCCccHHHHHHHHHHHHHHHHHc--CCC-------------------------EEEEcCCCC--cchhHHHHHH
Confidence 46655532 4667788888877755 322 456677763 4456666566
Q ss_pred HHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeecc-----eeecCCCCchHHHHHHHHHHHH
Q 006697 163 KWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPL-----GLGDDDQCIEDDFTAWRELVWP 237 (635)
Q Consensus 163 ~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~-----g~gD~~~~~e~~f~~W~~~l~~ 237 (635)
+.|+. .|.....++ + +-.--+..|+.|+.|. -+||-....++...--+.-+-.
T Consensus 358 keiE~--------~GIPvV~i~----~----------~~pI~~~vGanRiv~~~~i~~PlGnp~l~~~~e~~~rr~~v~~ 415 (431)
T TIGR01917 358 KEIER--------AGIPVVHIC----T----------VTPIALTVGANRIIPAIAIPHPLGDPALDAAEEKALRRKIVEK 415 (431)
T ss_pred HHHHH--------cCCCEEEEe----e----------chhHHHhcCCCceecCCCCCCCCCCCCCChhHHHHHHHHHHHH
Confidence 77765 267777776 1 2223346699998873 4555544445444333344555
Q ss_pred HHHHh
Q 006697 238 ELDQL 242 (635)
Q Consensus 238 ~L~~~ 242 (635)
+|..+
T Consensus 416 AL~aL 420 (431)
T TIGR01917 416 ALKAL 420 (431)
T ss_pred HHHHh
Confidence 55543
No 227
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=26.75 E-value=6.5e+02 Score=26.50 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeec
Q 006697 158 AARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (635)
Q Consensus 158 a~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~ 214 (635)
+....+|+.+. ...+++++++- +|.|-....+.+.+.+++.|.+.+..
T Consensus 120 ~~~~~~~~~~~------~g~k~vaii~~---d~~~g~~~~~~~~~~~~~~G~~vv~~ 167 (348)
T cd06355 120 IIPAVDWLMSN------KGGKRFYLVGS---DYVYPRTANKILKAQLESLGGEVVGE 167 (348)
T ss_pred HHHHHHHHHhc------cCCCeEEEECC---cchHHHHHHHHHHHHHHHcCCeEEee
Confidence 44566777653 23578999874 34444566788888999999987753
No 228
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=26.49 E-value=1.4e+02 Score=26.77 Aligned_cols=97 Identities=16% Similarity=0.044 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHH---Hhhh-ccCCeEEEEEecCCCCCCChhHHHHHHHHhcCCCC
Q 006697 96 TAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQY---EEKL-KKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDR 171 (635)
Q Consensus 96 tte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~---~~~l-~~~~~vif~~sTyg~G~~p~na~~F~~~L~~~~~~ 171 (635)
+..++++++.+.|.++ |.++-.++...-....... +.+. ..-++++++++. +.....++.+...
T Consensus 11 ~~~~~g~~v~~~l~~~--G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~-------~~~~~~v~~~~~~--- 78 (116)
T PF13380_consen 11 NPGKFGYRVLRNLKAA--GYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPP-------DKVPEIVDEAAAL--- 78 (116)
T ss_dssp STTSHHHHHHHHHHHT--T-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-H-------HHHHHHHHHHHHH---
T ss_pred CCCChHHHHHHHHHhC--CCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCH-------HHHHHHHHHHHHc---
Confidence 5566889999999886 7666666554322111011 1112 233677776653 4566667776652
Q ss_pred CCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeeccee
Q 006697 172 GPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVPLGL 217 (635)
Q Consensus 172 ~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~~g~ 217 (635)
|.+.++|-.| .....+.+.+++.|.+.+.|-+.
T Consensus 79 -----g~~~v~~~~g--------~~~~~~~~~a~~~gi~vigp~C~ 111 (116)
T PF13380_consen 79 -----GVKAVWLQPG--------AESEELIEAAREAGIRVIGPNCL 111 (116)
T ss_dssp -----T-SEEEE-TT--------S--HHHHHHHHHTT-EEEESS-H
T ss_pred -----CCCEEEEEcc--------hHHHHHHHHHHHcCCEEEeCCcc
Confidence 5677777766 23467778888899988877543
No 229
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=26.33 E-value=3.3e+02 Score=29.45 Aligned_cols=79 Identities=11% Similarity=0.191 Sum_probs=47.3
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCC-cCchHHHhhhccCCeEEEEEecCCCCCCChhHHH
Q 006697 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYA-MDDEQYEEKLKKETLAFFMVATYGDGEPTDNAAR 160 (635)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~-~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~ 160 (635)
+-++++|+|.+..|- ..++.|.+.++.. |.++....+..++ .+-...+.++...+.-.++..++ ++.+..
T Consensus 123 ~wk~vaiiYd~~~~~--~~lq~l~~~~~~~--g~~v~~~~~~~~~~~d~~~~L~~ik~~~~~~iil~~~-----~~~~~~ 193 (371)
T cd06388 123 EWNRFVFLYDTDRGY--SILQAIMEKAGQN--GWQVSAICVENFNDASYRRLLEDLDRRQEKKFVIDCE-----IERLQN 193 (371)
T ss_pred CceEEEEEecCCccH--HHHHHHHHhhHhc--CCeeeeEEeccCCcHHHHHHHHHhcccccEEEEEECC-----HHHHHH
Confidence 578999999988877 4477788877766 6554432232221 11123566666544333333333 256788
Q ss_pred HHHHHhcCC
Q 006697 161 FYKWFTEGN 169 (635)
Q Consensus 161 F~~~L~~~~ 169 (635)
+++..++..
T Consensus 194 il~qa~~~g 202 (371)
T cd06388 194 ILEQIVSVG 202 (371)
T ss_pred HHHHHHhcC
Confidence 888887754
No 230
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=25.46 E-value=1.7e+02 Score=25.24 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=28.8
Q ss_pred EEEEEECCCchHHHH--HHHHHHHHHhhhCCceEEEEeCCC
Q 006697 86 VTVFYGTQTGTAEGF--AKALAEEIKARYEKAAVKVVDLDD 124 (635)
Q Consensus 86 v~I~YgSqtGtte~~--A~~l~~~l~~~~~g~~~~v~dl~~ 124 (635)
|.|+|.|++|+.+-. .+++..-|.++ ++..+-+|++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k--~I~f~eiDI~~ 40 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAK--KIEFEEVDISM 40 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHC--CCceEEEecCC
Confidence 789999999987654 45666777777 78888888874
No 231
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.10 E-value=8.4e+02 Score=25.83 Aligned_cols=118 Identities=8% Similarity=-0.021 Sum_probs=80.6
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCc--hHHHhhhccC---CeEEEEEec---------
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD--EQYEEKLKKE---TLAFFMVAT--------- 148 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~--~~~~~~l~~~---~~vif~~sT--------- 148 (635)
..++.|+....--.+..|++...+.+++- |+.++++.+.+-..++ ...+.++.++ +.+++-.|=
T Consensus 32 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~--Gi~~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i 109 (294)
T PRK14187 32 FPCLIVILVGDDPASQLYVRNKQRKAEML--GLRSETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLI 109 (294)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHH
Confidence 45788888888889999999998988887 8999988886432222 1233344433 356666551
Q ss_pred ----------------------CCC---CCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHH
Q 006697 149 ----------------------YGD---GEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEE 203 (635)
Q Consensus 149 ----------------------yg~---G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~ 203 (635)
.|+ +-.|-++..-+++|+.... .++|+++.|+|-+ +-.++=+...
T Consensus 110 ~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~~PcTp~avi~lL~~~~i---~l~Gk~vvViGrS-------~iVGkPla~l 179 (294)
T PRK14187 110 INTIDPEKDVDGFHNENVGRLFTGQKKNCLIPCTPKGCLYLIKTITR---NLSGSDAVVIGRS-------NIVGKPMACL 179 (294)
T ss_pred HhccCcccCcccCChhhHHHHhCCCCCCCccCcCHHHHHHHHHHhCC---CCCCCEEEEECCC-------ccchHHHHHH
Confidence 122 2356777777777776443 3999999999832 3457888889
Q ss_pred HHHCCCEEe
Q 006697 204 LCKQGGARL 212 (635)
Q Consensus 204 L~~lGa~~v 212 (635)
|.+.||+..
T Consensus 180 L~~~~aTVt 188 (294)
T PRK14187 180 LLGENCTVT 188 (294)
T ss_pred HhhCCCEEE
Confidence 988898764
No 232
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=24.96 E-value=3.7e+02 Score=29.02 Aligned_cols=89 Identities=8% Similarity=0.081 Sum_probs=49.9
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCC--CCc---CchHHHhhhccCCeEEEEEecCCCCCCCh
Q 006697 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDD--YAM---DDEQYEEKLKKETLAFFMVATYGDGEPTD 156 (635)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~--~~~---~~~~~~~~l~~~~~vif~~sTyg~G~~p~ 156 (635)
+-+++.|+|.|-. ....++.+.+.++.. |.++....+.. +.. +-...+.++...+.=+++..++ ++
T Consensus 117 ~wk~vailYdsd~--gl~~lq~l~~~~~~~--g~~V~~~~~~~i~~~~~~~d~~~~L~~ik~~~~~~Iil~~~-----~~ 187 (370)
T cd06389 117 QWDKFAYLYDSDR--GLSTLQAVLDSAAEK--KWQVTAINVGNINNDRKDEAYRSLFQDLENKKERRVILDCE-----RD 187 (370)
T ss_pred CCcEEEEEecCch--HHHHHHHHHHhhccC--CceEEEEEeecCCCccchHHHHHHHHHhccccceEEEEECC-----HH
Confidence 5789999998654 455677787877766 65544332211 111 1122455565443333333333 25
Q ss_pred hHHHHHHHHhcCCCCCCCCCCceEE-EEE
Q 006697 157 NAARFYKWFTEGNDRGPWLQQLKFG-VFG 184 (635)
Q Consensus 157 na~~F~~~L~~~~~~~~~l~~~~~a-VFG 184 (635)
.+..+++...+.. +.+..|. ++|
T Consensus 188 ~~~~il~qa~~~g-----m~~~~y~~il~ 211 (370)
T cd06389 188 KVNDIVDQVITIG-----KHVKGYHYIIA 211 (370)
T ss_pred HHHHHHHHHHHhC-----ccccceEEEEc
Confidence 7888888887754 4445555 444
No 233
>PF02900 LigB: Catalytic LigB subunit of aromatic ring-opening dioxygenase; InterPro: IPR004183 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A and B. Enzymes that belong to the extradiol class III family include Protocatechuate 4,5-dioxygenase (4,5-PCD; LigAB) (1.13.11.8 from EC) []; and 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarBaBb) []. The crystal structure of dioxygenase LigAB revealed that the molecule is an alpha2beta2 tetramer. The active site contains a non-heme iron coordinated by His12, His61, Glu242, and a water molecule located in a deep cleft of the beta subunit, which is covered by the alpha subunit []. This entry represents the structural domain of subunit B.; GO: 0008198 ferrous iron binding, 0016491 oxidoreductase activity, 0006725 cellular aromatic compound metabolic process; PDB: 2PW6_A 1B4U_D 1BOU_B.
Probab=24.87 E-value=2.6e+02 Score=28.69 Aligned_cols=104 Identities=11% Similarity=0.078 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhcc---CCeEEEEEecCCCCCCChhHHHHHH---HHhcCC
Q 006697 96 TAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKK---ETLAFFMVATYGDGEPTDNAARFYK---WFTEGN 169 (635)
Q Consensus 96 tte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~---~~~vif~~sTyg~G~~p~na~~F~~---~L~~~~ 169 (635)
...++|++|.+.+.+. |+.+....--.+|..--.-+.-+.. ..++-+.+.+.... -.+.++.++ -|....
T Consensus 94 g~~~la~~i~~~l~~~--g~~~~~~~~~~lDHG~~vPL~~l~p~~~~Pvv~is~~~~~~p--~~~~~~~~~lG~aL~~~~ 169 (272)
T PF02900_consen 94 GDPELAERIAEHLRKA--GFDVAASPERGLDHGVWVPLYFLFPDADIPVVPISINSFAPP--SPSPERHYRLGRALRKAR 169 (272)
T ss_dssp B-HHHHHHHHHHHHHT--TS-EEECSS--B-HHHHHHHHHHCTT-SSEEEEEEEETSSS---TS-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--CCCEEeccCcCCccccceeeeecccccCcceeeeEeeccccc--CCCHHHHHHHHHHHHHHH
Confidence 4578999999999988 7765542111122111000111222 23343444442222 233444444 354422
Q ss_pred CCCCCCCCceEEEEEecCcch-----h--HHHH-HHHHHHHHHHHC
Q 006697 170 DRGPWLQQLKFGVFGLGNRQY-----E--HFNK-IGIVLDEELCKQ 207 (635)
Q Consensus 170 ~~~~~l~~~~~aVFGlGds~Y-----~--~f~~-~~k~ld~~L~~l 207 (635)
.+ . +.+++|+|.|+.+. . .+.. .++.+|+++.++
T Consensus 170 ~~---~-~~rv~vi~SG~lsH~l~~~~~~~~~~~~~~~fD~~i~~~ 211 (272)
T PF02900_consen 170 ES---S-DERVAVIASGGLSHNLRDPRPGGYDPPWAEEFDEWILDA 211 (272)
T ss_dssp HT---S-GGCEEEEEEE-SS--TTSTTTTS---CHHHHHHHHHHCC
T ss_pred Hh---c-CCCEEEEEeCCcccCCCcccccchhhHhHHHHHHHHHHH
Confidence 11 2 78999999998875 1 2222 567777777654
No 234
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=24.79 E-value=55 Score=29.88 Aligned_cols=51 Identities=18% Similarity=0.211 Sum_probs=32.0
Q ss_pred EEEecCcchh---HHHHHHHHHHHHHHHCCCEEeecceeecCCCCchHHHHHHH
Q 006697 182 VFGLGNRQYE---HFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWR 232 (635)
Q Consensus 182 VFGlGds~Y~---~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~~~e~~f~~W~ 232 (635)
|+-.||.-.. -++..+..+.++|++.|++........|+.+.+.+.+.+|.
T Consensus 2 vi~~GdEi~~~~~~~d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~ 55 (135)
T smart00852 2 IISTGDELLSGGQIYDSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREAL 55 (135)
T ss_pred EEEEechhhcCCCcccCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHH
Confidence 4455665442 14666788999999999986655455555444555555553
No 235
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.79 E-value=8.3e+02 Score=25.68 Aligned_cols=118 Identities=12% Similarity=0.074 Sum_probs=79.3
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCc-Cc-hHHHhhhccC---CeEEEEEec---------
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM-DD-EQYEEKLKKE---TLAFFMVAT--------- 148 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~-~~-~~~~~~l~~~---~~vif~~sT--------- 148 (635)
..++.|+....--.+..|++...+.+++- |+.++++.+.+--. ++ ...+.++.++ +.+++-.|-
T Consensus 30 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~--Gi~~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i 107 (282)
T PRK14182 30 QTGLTVVRVGDDPASAIYVRGKRKDCEEV--GITSVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAV 107 (282)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHH
Confidence 45788888888888899999888888877 88888888754322 11 1123333333 356666552
Q ss_pred ---------------C-------CC-C-CCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHH
Q 006697 149 ---------------Y-------GD-G-EPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEEL 204 (635)
Q Consensus 149 ---------------y-------g~-G-~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L 204 (635)
+ |+ + -.|-++..-+++|+.... .++|++++|+|=+ +-.++=+...|
T Consensus 108 ~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~PcTp~avi~ll~~~~i---~l~Gk~vvViGrS-------~iVGkPla~lL 177 (282)
T PRK14182 108 LDAISPAKDADGFHPFNVGALSIGIAGVPRPCTPAGVMRMLDEARV---DPKGKRALVVGRS-------NIVGKPMAMML 177 (282)
T ss_pred HhccCcccCcCCCCHhHHHHHhCCCCCCCCCCCHHHHHHHHHHhCC---CCCCCEEEEECCC-------CcchHHHHHHH
Confidence 1 11 1 257777777888876543 3899999999832 33578888889
Q ss_pred HHCCCEEe
Q 006697 205 CKQGGARL 212 (635)
Q Consensus 205 ~~lGa~~v 212 (635)
.+.||+..
T Consensus 178 ~~~~AtVt 185 (282)
T PRK14182 178 LERHATVT 185 (282)
T ss_pred HHCCCEEE
Confidence 88888654
No 236
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=24.41 E-value=2.4e+02 Score=24.49 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=33.8
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCc--eEEEEeCCCCC
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKA--AVKVVDLDDYA 126 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~--~~~v~dl~~~~ 126 (635)
+++|+.+.|+-=||+--++..+.+.|+++ |+ .+.....+++.
T Consensus 1 ~~KIL~aCG~GvgSS~~ik~kve~~l~~~--gi~~~~~~~~v~~~~ 44 (93)
T COG3414 1 MIKILAACGNGVGSSTMIKMKVEEVLKEL--GIDVDVEQCAVDEIK 44 (93)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHHc--CCCceeeeEEecccc
Confidence 46899999999999999999999999988 66 44444555544
No 237
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=24.32 E-value=2.4e+02 Score=27.34 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=20.8
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEE
Q 006697 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVV 120 (635)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~ 120 (635)
.+.+|.++ |.++..++++++.++++|+++++.-.
T Consensus 47 ~~~~vfll-----G~~~~v~~~~~~~l~~~yP~l~i~g~ 80 (177)
T TIGR00696 47 EKLPIFLY-----GGKPDVLQQLKVKLIKEYPKLKIVGA 80 (177)
T ss_pred cCCeEEEE-----CCCHHHHHHHHHHHHHHCCCCEEEEE
Confidence 44555544 55566666666777777887665443
No 238
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=23.99 E-value=67 Score=28.81 Aligned_cols=59 Identities=25% Similarity=0.241 Sum_probs=36.5
Q ss_pred cCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhh-hccCCeEEEE
Q 006697 81 AGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEK-LKKETLAFFM 145 (635)
Q Consensus 81 ~~~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~-l~~~~~vif~ 145 (635)
++..-++|.|||+...+.+.|+.|.+ + |+++.++|+.-..+-+.+.+.+ +.+.+.++++
T Consensus 8 ~g~di~iia~G~~~~~al~A~~~L~~----~--Gi~~~vi~~~~i~P~d~~~l~~~~~~~~~vvvv 67 (124)
T PF02780_consen 8 EGADITIIAYGSMVEEALEAAEELEE----E--GIKAGVIDLRTIKPFDEEALLESLKKTGRVVVV 67 (124)
T ss_dssp SSSSEEEEEETTHHHHHHHHHHHHHH----T--TCEEEEEEEEEEESSBHHHHHHHSHHHHHHHHS
T ss_pred CCCCEEEEeehHHHHHHHHHHHHHHH----c--CCceeEEeeEEEecccccchHHHHHHhcccccc
Confidence 34555778888888777776665554 4 7888888876555444344444 4444444444
No 239
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=23.98 E-value=2.7e+02 Score=32.80 Aligned_cols=78 Identities=17% Similarity=0.124 Sum_probs=49.2
Q ss_pred cCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccC-CeEEEEEecCCCCCCChhHH
Q 006697 81 AGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKE-TLAFFMVATYGDGEPTDNAA 159 (635)
Q Consensus 81 ~~~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~-~~vif~~sTyg~G~~p~na~ 159 (635)
++..-.+|.||++...+.+.|+.|++ . |+.++|+|+.-..+-|.+.+.++.+. +.+|.+=... .|.. +.
T Consensus 543 eG~dvtIva~G~~v~~Al~AA~~L~~----~--GI~v~VId~rsikPlD~~~i~sl~k~~~~vVt~Ee~~-~GG~---Gs 612 (641)
T PLN02234 543 DGERVALLGYGSAVQRCLEAASMLSE----R--GLKITVADARFCKPLDVALIRSLAKSHEVLITVEEGS-IGGF---GS 612 (641)
T ss_pred eCCCEEEEEecHHHHHHHHHHHHHHh----c--CCCEEEEecCCcCCCCHHHHHHHHHhCCEEEEECCCC-CCcH---HH
Confidence 34556778899999998888877643 4 78899999886665554455666654 5554443332 2432 34
Q ss_pred HHHHHHhcC
Q 006697 160 RFYKWFTEG 168 (635)
Q Consensus 160 ~F~~~L~~~ 168 (635)
...++|.+.
T Consensus 613 ~Va~~l~e~ 621 (641)
T PLN02234 613 HVVQFLALD 621 (641)
T ss_pred HHHHHHHHc
Confidence 455666553
No 240
>PRK08105 flavodoxin; Provisional
Probab=23.80 E-value=4.7e+02 Score=24.36 Aligned_cols=98 Identities=16% Similarity=0.113 Sum_probs=51.4
Q ss_pred CeEEEEEecCCCCCCChhHHHHHHHHhcCCCC--------CCCC--CCceEEEEEe---cCcch-hHHHHHHHHHHHHHH
Q 006697 140 TLAFFMVATYGDGEPTDNAARFYKWFTEGNDR--------GPWL--QQLKFGVFGL---GNRQY-EHFNKIGIVLDEELC 205 (635)
Q Consensus 140 ~~vif~~sTyg~G~~p~na~~F~~~L~~~~~~--------~~~l--~~~~~aVFGl---Gds~Y-~~f~~~~k~ld~~L~ 205 (635)
++.||..|++|+-+ .-|..+.+.+.....+ -..+ ..-...||++ |+-.. +..-.+-..+.+...
T Consensus 3 ~i~I~YgS~tGnte--~~A~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~vi~~~sT~G~Ge~p~~~~~f~~~l~~~~~ 80 (149)
T PRK08105 3 KVGIFVGTVYGNAL--LVAEEAEAILTAQGHEVTLFEDPELSDWQPYQDELVLVVTSTTGQGDLPDSIVPLFQALKDTAG 80 (149)
T ss_pred eEEEEEEcCchHHH--HHHHHHHHHHHhCCCceEEechhhCCchhcccCCeEEEEECCCCCCCCChhHHHHHHHHHhcCc
Confidence 46777788886544 3444444555432111 0112 2235677776 22222 222222222222211
Q ss_pred HCCCEEeecceeecCCCCchHHHHHHHHHHHHHHHHh
Q 006697 206 KQGGARLVPLGLGDDDQCIEDDFTAWRELVWPELDQL 242 (635)
Q Consensus 206 ~lGa~~v~~~g~gD~~~~~e~~f~~W~~~l~~~L~~~ 242 (635)
.+...++.-.|+||.. + +.|..+...+-..|.++
T Consensus 81 ~l~~~~~avfGlGds~--Y-~~fc~~~~~ld~~l~~l 114 (149)
T PRK08105 81 YQPNLRYGVIALGDSS--Y-DNFCGAGKQFDALLQEQ 114 (149)
T ss_pred ccCCCEEEEEeeecCC--H-HHHHHHHHHHHHHHHHC
Confidence 3556677778999763 4 77888888877777653
No 241
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=23.72 E-value=2.1e+02 Score=28.74 Aligned_cols=42 Identities=12% Similarity=0.030 Sum_probs=32.0
Q ss_pred eeEEEEEeEEecCCCCCCceEEEEEEecCC-C-CccCCCCeEEEeccCC
Q 006697 295 CRVNVAVRRELHKPDSDRSCIHLEFDVSGT-G-ITYETGDHVGVYVENC 341 (635)
Q Consensus 295 ~~a~V~~~~~L~~~~~~r~~~hie~di~~~-~-l~Y~~GD~l~I~p~N~ 341 (635)
-.++|++...++ .++++++|+.++. . +.|+||+++.|...++
T Consensus 7 ~~~~v~~~~~~s-----~~~~~l~l~~~~~~~~~~~~pGQ~v~l~~~~~ 50 (247)
T cd06184 7 RPFVVARKVAES-----EDITSFYLEPADGGPLPPFLPGQYLSVRVKLP 50 (247)
T ss_pred EEEEEEEEEEcC-----CCeEEEEEEeCCCCcCCCCCCCCEEEEEEecC
Confidence 356788888775 3688999987653 2 7899999999996553
No 242
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=23.49 E-value=1.7e+02 Score=31.18 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=35.0
Q ss_pred CCCCeeEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCC
Q 006697 291 IHHPCRVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENC 341 (635)
Q Consensus 291 ~~~p~~a~V~~~~~L~~~~~~r~~~hie~di~~~~l~Y~~GD~l~I~p~N~ 341 (635)
.+.|+.++|...+.++. .++.+.|...+ .+.|+||.|+.|..++.
T Consensus 6 ~~~~~~~~V~~i~~~t~-----~v~~l~l~~~~-~~~f~pGQfv~l~~~~~ 50 (332)
T PRK10684 6 PQCPNRMQVHSIVQETP-----DVWTISLICHD-FYPYRAGQYALVSIRNS 50 (332)
T ss_pred CCCceeEEEEEEEccCC-----CeEEEEEcCCC-CCCcCCCCEEEEEecCC
Confidence 45678899998888774 57788887543 57899999999986654
No 243
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=23.25 E-value=1.9e+02 Score=30.53 Aligned_cols=59 Identities=10% Similarity=0.091 Sum_probs=38.2
Q ss_pred CCCeEEEEEECCCchH-HHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEE
Q 006697 82 GKTKVTVFYGTQTGTA-EGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFM 145 (635)
Q Consensus 82 ~~~~v~I~YgSqtGtt-e~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~ 145 (635)
+.+.+.|+.||.+|.. ..++++|.+.++++ |.+.-++-+.+...+. +..+.+-+.+|++
T Consensus 208 ~a~~~GIiv~tl~~q~~~~~~~~l~~~l~~~--gkk~y~~~~~~i~~~k---L~nf~eid~fV~~ 267 (307)
T PF01866_consen 208 DAKTFGIIVGTLGGQGYLELIKRLKKLLKKA--GKKSYTLSVGEINPAK---LANFPEIDAFVQI 267 (307)
T ss_dssp T--EEEEEEE-STTT--HHHHHHHHHHHHHT--T-EEEEEEESS--GGG---GTTS---SEEEE-
T ss_pred cCCEEEEEEecCCCCCCHHHHHHHHHHHHHc--CCEEEEEEECCCCHHH---HhcCcccCEEEEe
Confidence 5688999999998865 56789999999998 8888888888888776 3334444555554
No 244
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=23.23 E-value=1.3e+02 Score=32.30 Aligned_cols=95 Identities=12% Similarity=0.043 Sum_probs=57.4
Q ss_pred cCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchH-HHhhhccCCeEEEEEecCCCCCCChhHH
Q 006697 81 AGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQ-YEEKLKKETLAFFMVATYGDGEPTDNAA 159 (635)
Q Consensus 81 ~~~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~-~~~~l~~~~~vif~~sTyg~G~~p~na~ 159 (635)
++..-.+|.||+++..+.+.|+.|+ ++ |++++++|+-...+-|.+ +...+.+.+.+|++=--+-.|..=..
T Consensus 200 ~G~ditiia~G~~v~~al~Aa~~L~----~~--Gi~~~VId~~~ikPlD~~~i~~~~~~t~~vv~vEE~~~~gGlG~~-- 271 (327)
T CHL00144 200 PGNDITILTYSRMRHHVLQAVKVLV----EK--GYDPEIIDLISLKPLDLGTISKSVKKTHKVLIVEECMKTGGIGAE-- 271 (327)
T ss_pred cCCCEEEEEccHHHHHHHHHHHHHH----hc--CCCEEEEecCcCCCCCHHHHHHHHHhhCcEEEEECCCCCCCHHHH--
Confidence 3455566778888888888777764 35 888999999877655533 44556667777777554444543333
Q ss_pred HHHHHHhcCCCCCCCCCCceEEEEEecC
Q 006697 160 RFYKWFTEGNDRGPWLQQLKFGVFGLGN 187 (635)
Q Consensus 160 ~F~~~L~~~~~~~~~l~~~~~aVFGlGd 187 (635)
..+++.+.... .-..++.-+|.-|
T Consensus 272 -va~~l~e~~f~---~~~~pv~rl~~~d 295 (327)
T CHL00144 272 -LIAQINEHLFD---ELDAPIVRLSSQD 295 (327)
T ss_pred -HHHHHHHhchh---hcCCCeEEEccCC
Confidence 44455442100 0124677777654
No 245
>PTZ00110 helicase; Provisional
Probab=23.17 E-value=8.3e+02 Score=28.04 Aligned_cols=112 Identities=10% Similarity=0.063 Sum_probs=61.7
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCC-eEEEEEecCCCC--------
Q 006697 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKET-LAFFMVATYGDG-------- 152 (635)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~-~vif~~sTyg~G-------- 152 (635)
...+++||..| .+-|+.|++.|... ++.+..+.-+.-..+.+.++.++.+.+ -+++.+...+.|
T Consensus 376 ~~~k~LIF~~t-----~~~a~~l~~~L~~~--g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~ 448 (545)
T PTZ00110 376 DGDKILIFVET-----KKGADFLTKELRLD--GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKY 448 (545)
T ss_pred cCCeEEEEecC-----hHHHHHHHHHHHHc--CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCE
Confidence 45577777643 45566677777655 555544422222222233566666544 355555555666
Q ss_pred ----CCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCC
Q 006697 153 ----EPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQG 208 (635)
Q Consensus 153 ----~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lG 208 (635)
++|.+...|+..+....-. --+|.-+..|-- .-...++.+-+.|++.+
T Consensus 449 VI~~d~P~s~~~yvqRiGRtGR~--G~~G~ai~~~~~------~~~~~~~~l~~~l~~~~ 500 (545)
T PTZ00110 449 VINFDFPNQIEDYVHRIGRTGRA--GAKGASYTFLTP------DKYRLARDLVKVLREAK 500 (545)
T ss_pred EEEeCCCCCHHHHHHHhcccccC--CCCceEEEEECc------chHHHHHHHHHHHHHcc
Confidence 6788888888877542211 134555555542 22345667777777755
No 246
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=23.10 E-value=1.1e+02 Score=27.83 Aligned_cols=38 Identities=26% Similarity=0.254 Sum_probs=29.7
Q ss_pred EEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCC
Q 006697 86 VTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDY 125 (635)
Q Consensus 86 v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~ 125 (635)
+++.|....|-+|.++..++++|.++ |+++.++....-
T Consensus 3 i~~~~~~~~GG~e~~~~~l~~~l~~~--G~~v~v~~~~~~ 40 (177)
T PF13439_consen 3 ITNIFLPNIGGAERVVLNLARALAKR--GHEVTVVSPGVK 40 (177)
T ss_dssp EECC-TTSSSHHHHHHHHHHHHHHHT--T-EEEEEESS-T
T ss_pred EEEecCCCCChHHHHHHHHHHHHHHC--CCEEEEEEcCCC
Confidence 45667788999999999999999999 899988855433
No 247
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.04 E-value=9e+02 Score=25.46 Aligned_cols=119 Identities=8% Similarity=-0.022 Sum_probs=75.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCC-cCc-hHHHhhhccC---CeEEEEEecCC-------
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYA-MDD-EQYEEKLKKE---TLAFFMVATYG------- 150 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~-~~~-~~~~~~l~~~---~~vif~~sTyg------- 150 (635)
..++.|+.....-.+..|++...+.+++- |+.++++.+.+-. .++ ...+.++.++ +.+++-.|--.
T Consensus 32 ~p~Laii~vg~d~as~~Yv~~k~k~~~~~--Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i 109 (285)
T PRK14189 32 QPGLAVILVGDNPASQVYVRNKVKACEDN--GFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKV 109 (285)
T ss_pred CCeEEEEEeCCCchHHHHHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHH
Confidence 45677777777778888888888888777 7888887775322 111 1123333332 24555544221
Q ss_pred -------------------------CCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHH
Q 006697 151 -------------------------DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELC 205 (635)
Q Consensus 151 -------------------------~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~ 205 (635)
.+-.|-++..-+++|+.... .++|+++.|.|-|+. .++-+...|.
T Consensus 110 ~~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~aii~lL~~~~i---~l~Gk~vvViGrs~i-------VGkPla~lL~ 179 (285)
T PRK14189 110 IEAIAPEKDVDGFHVANAGALMTGQPLFRPCTPYGVMKMLESIGI---PLRGAHAVVIGRSNI-------VGKPMAMLLL 179 (285)
T ss_pred HhhcCcccCcccCChhhhhHhhCCCCCCcCCCHHHHHHHHHHcCC---CCCCCEEEEECCCCc-------cHHHHHHHHH
Confidence 12246666666677765443 499999999996543 3788888999
Q ss_pred HCCCEEee
Q 006697 206 KQGGARLV 213 (635)
Q Consensus 206 ~lGa~~v~ 213 (635)
..||+...
T Consensus 180 ~~~atVt~ 187 (285)
T PRK14189 180 QAGATVTI 187 (285)
T ss_pred HCCCEEEE
Confidence 99997653
No 248
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=22.99 E-value=2e+02 Score=29.19 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=12.1
Q ss_pred ECCCchHHHHHHHHHH
Q 006697 91 GTQTGTAEGFAKALAE 106 (635)
Q Consensus 91 gSqtGtte~~A~~l~~ 106 (635)
|-+.||++.+|..|.+
T Consensus 111 Ge~~gNa~~LaD~Ive 126 (260)
T KOG4132|consen 111 GEDAGNAEILADLIVE 126 (260)
T ss_pred ccccccHHHHhHhhhh
Confidence 4567888888877776
No 249
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=22.91 E-value=7.1e+02 Score=24.22 Aligned_cols=37 Identities=11% Similarity=0.121 Sum_probs=22.8
Q ss_pred EEEEEEC-CCchHHHHHHHHHHHHHhhhCCceEEEEeCCC
Q 006697 86 VTVFYGT-QTGTAEGFAKALAEEIKARYEKAAVKVVDLDD 124 (635)
Q Consensus 86 v~I~YgS-qtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~ 124 (635)
|.+++.. ...--..+.+.+.+.+.++ |.++.+++.+.
T Consensus 2 ig~i~p~~~~~~~~~~~~~~~~~a~~~--g~~~~~~~~~~ 39 (267)
T cd01536 2 IGLVVPSLNNPFWQAMNKGAEAAAKEL--GVELIVLDAQN 39 (267)
T ss_pred EEEEeccccCHHHHHHHHHHHHHHHhc--CceEEEECCCC
Confidence 4455533 2344455667777777766 77777776654
No 250
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=22.85 E-value=1.9e+02 Score=31.36 Aligned_cols=60 Identities=20% Similarity=0.057 Sum_probs=40.0
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchH-HHhhhccCCeEEEEEec
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQ-YEEKLKKETLAFFMVAT 148 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~-~~~~l~~~~~vif~~sT 148 (635)
..-++|.|||+++++++.++.+.+ + |+++.++++..+.+-+.+ +...+.+.+.|+++==+
T Consensus 247 ad~~iva~Gs~~~~a~eA~~~L~~----~--Gi~v~vi~~~~l~Pfp~~~i~~~l~~~k~VivvE~n 307 (352)
T PRK07119 247 AELVLVAYGTSARIAKSAVDMARE----E--GIKVGLFRPITLWPFPEKALEELADKGKGFLSVEMS 307 (352)
T ss_pred CCEEEEEcCccHHHHHHHHHHHHH----c--CCeEEEEeeceecCCCHHHHHHHHhCCCEEEEEeCC
Confidence 446888999999999888876643 4 777888887655444322 44445666766666433
No 251
>TIGR02298 HpaD_Fe 3,4-dihydroxyphenylacetate 2,3-dioxygenase. This enzyme catalyzes the ring-opening step in the degradation of 4-hydroxyphenylacetate.
Probab=22.85 E-value=5.6e+02 Score=26.79 Aligned_cols=87 Identities=6% Similarity=0.045 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCc--hHHHhhh-ccCCe-EEEEEecCCCCCCChhHHHHHHHHhcCCCCC
Q 006697 97 AEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD--EQYEEKL-KKETL-AFFMVATYGDGEPTDNAARFYKWFTEGNDRG 172 (635)
Q Consensus 97 te~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~--~~~~~~l-~~~~~-vif~~sTyg~G~~p~na~~F~~~L~~~~~~~ 172 (635)
..++|++|++.+.+. |+.+...+..+...+. ---+.-+ ++.++ +|-++... ..-.+....+|=+.|.....
T Consensus 95 d~eLA~~i~~~~~~~--gi~~~~~~~~~~~lDHG~~vPL~~l~p~~~ipvV~is~~~-~~~~~~~~~~lG~al~~~i~-- 169 (282)
T TIGR02298 95 NPALGQLIADEAQEH--GVKTLAHQVPSLGLEYGTLVPMRYMNEDGHFKVVSIAAWC-TVHDIEESRALGEAIRKAIE-- 169 (282)
T ss_pred CHHHHHHHHHHHHHC--CCceeeccCCCCCCCeehHhHHHHhCCCCCCcEEEEeecC-CCCCHHHHHHHHHHHHHHHH--
Confidence 367999999999887 7765433333322221 0011112 22232 33333221 12233344444444555211
Q ss_pred CCCCCceEEEEEecCcch
Q 006697 173 PWLQQLKFGVFGLGNRQY 190 (635)
Q Consensus 173 ~~l~~~~~aVFGlGds~Y 190 (635)
-.+.+++|+|+||.+.
T Consensus 170 --~~~~rV~iIaSG~lSH 185 (282)
T TIGR02298 170 --QSDGRVAVLASGSLSH 185 (282)
T ss_pred --hcCCCEEEEEecccce
Confidence 1468899999998875
No 252
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=22.83 E-value=5.5e+02 Score=23.80 Aligned_cols=107 Identities=21% Similarity=0.255 Sum_probs=54.2
Q ss_pred EEEECCCchHHHHHHHHHHHHHhhhCCceEE-EEeC---CCCCcCchHHHhhh---ccCCeEEEEEecCCCCCCChhHHH
Q 006697 88 VFYGTQTGTAEGFAKALAEEIKARYEKAAVK-VVDL---DDYAMDDEQYEEKL---KKETLAFFMVATYGDGEPTDNAAR 160 (635)
Q Consensus 88 I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~-v~dl---~~~~~~~~~~~~~l---~~~~~vif~~sTyg~G~~p~na~~ 160 (635)
|.+-||+|. ++..+...+.++ |+-+. ++.+ .+.+..+ +++-+ ++.+.+++..-..++ .++
T Consensus 4 valisQSG~---~~~~~~~~~~~~--g~g~s~~vs~Gn~~dv~~~d--~l~~~~~D~~t~~I~ly~E~~~d------~~~ 70 (138)
T PF13607_consen 4 VALISQSGA---LGTAILDWAQDR--GIGFSYVVSVGNEADVDFAD--LLEYLAEDPDTRVIVLYLEGIGD------GRR 70 (138)
T ss_dssp EEEEES-HH---HHHHHHHHHHHT--T-EESEEEE-TT-SSS-HHH--HHHHHCT-SS--EEEEEES--S-------HHH
T ss_pred EEEEECCHH---HHHHHHHHHHHc--CCCeeEEEEeCccccCCHHH--HHHHHhcCCCCCEEEEEccCCCC------HHH
Confidence 445599986 455676777666 54443 2322 3343333 44444 344677777766644 577
Q ss_pred HHHHHhcCCCCCCCCCCceEEEEEecCcch------hHHHH---HHHHHHHHHHHCCCEEee
Q 006697 161 FYKWFTEGNDRGPWLQQLKFGVFGLGNRQY------EHFNK---IGIVLDEELCKQGGARLV 213 (635)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y------~~f~~---~~k~ld~~L~~lGa~~v~ 213 (635)
|++..+... .+ |++.++=.|-+.- .|-.. --+.++..|++.|+.++.
T Consensus 71 f~~~~~~a~-----~~-KPVv~lk~Grt~~g~~aa~sHTgslag~~~~~~a~~~~aGv~~v~ 126 (138)
T PF13607_consen 71 FLEAARRAA-----RR-KPVVVLKAGRTEAGARAAASHTGSLAGDDAVYDAALRQAGVVRVD 126 (138)
T ss_dssp HHHHHHHHC-----CC-S-EEEEE---------------------HHHHHHHHHHCTEEEES
T ss_pred HHHHHHHHh-----cC-CCEEEEeCCCchhhhhhhhccCCcccCcHHHHHHHHHHcCceEEC
Confidence 999888754 33 7787777764322 23222 236788889999988764
No 253
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=22.70 E-value=43 Score=31.02 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=36.0
Q ss_pred EEEEecCcch--hHHHHHHHHHHHHHHHCCCEEeecceeecCCCCchHHHHHHH
Q 006697 181 GVFGLGNRQY--EHFNKIGIVLDEELCKQGGARLVPLGLGDDDQCIEDDFTAWR 232 (635)
Q Consensus 181 aVFGlGds~Y--~~f~~~~k~ld~~L~~lGa~~v~~~g~gD~~~~~e~~f~~W~ 232 (635)
||+-.||.-+ .-++..+..+.++|++.|++........|+.+.+.+.+..|.
T Consensus 1 aIi~~GdEl~~g~~~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~ 54 (144)
T PF00994_consen 1 AIISTGDELLSGQIRDSNGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRAL 54 (144)
T ss_dssp EEEEECHHHHTTSSEBHHHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred CEEEECccCcCCceEEhHHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhh
Confidence 5677777776 346777889999999999977655555565445555555554
No 254
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=22.67 E-value=1.3e+02 Score=32.63 Aligned_cols=42 Identities=12% Similarity=0.124 Sum_probs=31.2
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhC-CceEEEEeCC
Q 006697 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYE-KAAVKVVDLD 123 (635)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~-g~~~~v~dl~ 123 (635)
.+|+|+|+.+|..|.=...|+.|++.+..+.+ +..+.++|+=
T Consensus 4 ~~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~D~~ 46 (391)
T PRK13608 4 QNKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEHDLF 46 (391)
T ss_pred CCceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEeehH
Confidence 46899999999876778889999999987622 2456555543
No 255
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=22.50 E-value=4.5e+02 Score=31.27 Aligned_cols=92 Identities=16% Similarity=0.079 Sum_probs=53.7
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccC-CeEEEEEecCCCCCCChhHHH
Q 006697 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKE-TLAFFMVATYGDGEPTDNAAR 160 (635)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~-~~vif~~sTyg~G~~p~na~~ 160 (635)
+..-.+|.||++...|.+.|+.|+ +. |+.++|+|+--..+-|..++.++.+. +.+|.+=..+- |.. ...
T Consensus 543 G~dvtIva~G~~v~~Al~Aa~~L~----~~--GI~~~VId~~~lkPlD~~~i~~~~k~~~~vVtvEe~~~-GG~---Gs~ 612 (677)
T PLN02582 543 GERVALLGYGTAVQSCLAAASLLE----RH--GLSATVADARFCKPLDRALIRSLAKSHEVLITVEEGSI-GGF---GSH 612 (677)
T ss_pred CCCEEEEeecHHHHHHHHHHHHHH----hc--CCCEEEEEcCcCCCCCHHHHHHHhhhCCEEEEECCCCC-CcH---HHH
Confidence 444567788888888887777664 35 78899999987766555555666544 45555533332 332 233
Q ss_pred HHHHHhcCCCCCCCCCCceEEEEEec
Q 006697 161 FYKWFTEGNDRGPWLQQLKFGVFGLG 186 (635)
Q Consensus 161 F~~~L~~~~~~~~~l~~~~~aVFGlG 186 (635)
..+++.+.... ...+++--+|+-
T Consensus 613 va~~l~~~~~~---~~~~~v~~~Gi~ 635 (677)
T PLN02582 613 VAQFMALDGLL---DGKLKWRPLVLP 635 (677)
T ss_pred HHHHHHhcCCc---cCCceeEEecCC
Confidence 45555543210 112456666653
No 256
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=22.44 E-value=1.1e+02 Score=26.34 Aligned_cols=86 Identities=10% Similarity=0.144 Sum_probs=48.9
Q ss_pred eEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccCCeEEEEEecCCCCCCChhHHHHHHH
Q 006697 85 KVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKW 164 (635)
Q Consensus 85 ~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~~~ 164 (635)
+|+++.|+--+|+ -+|+.+.+.++++ |.++++... ...+ +.....+++ +|+.+|-. +..++.
T Consensus 1 kIl~~Cg~G~sTS-~~~~ki~~~~~~~--~~~~~v~~~---~~~~--~~~~~~~~D-iil~~Pqv---------~~~~~~ 62 (96)
T cd05564 1 KILLVCSAGMSTS-ILVKKMKKAAEKR--GIDAEIEAV---PESE--LEEYIDDAD-VVLLGPQV---------RYMLDE 62 (96)
T ss_pred CEEEEcCCCchHH-HHHHHHHHHHHHC--CCceEEEEe---cHHH--HHHhcCCCC-EEEEChhH---------HHHHHH
Confidence 4889999988888 6899999999988 776544322 2211 111133455 55555544 223455
Q ss_pred HhcCCCCCCCCCCceEEEEEecCcchhHHH
Q 006697 165 FTEGNDRGPWLQQLKFGVFGLGNRQYEHFN 194 (635)
Q Consensus 165 L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~ 194 (635)
+++... ..+.++.+.. ...|.+.+
T Consensus 63 i~~~~~----~~~~pv~~I~--~~~Y~~~d 86 (96)
T cd05564 63 VKKKAA----EYGIPVAVID--MMDYGMMN 86 (96)
T ss_pred HHHHhc----cCCCcEEEcC--hHhcccCC
Confidence 543211 2356666665 34465544
No 257
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=22.39 E-value=6.3e+02 Score=24.06 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=16.3
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhh
Q 006697 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKAR 111 (635)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~l~~~l~~~ 111 (635)
...++.++++..........+.+.+.+.+.
T Consensus 123 ~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 152 (269)
T cd01391 123 GWKRVALIYGDDGAYGRERLEGFKAALKKA 152 (269)
T ss_pred CCceEEEEecCCcchhhHHHHHHHHHHHhc
Confidence 456777777665433344444555555444
No 258
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=22.15 E-value=1.4e+02 Score=35.04 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=30.4
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCce-EEEEeC
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAA-VKVVDL 122 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~-~~v~dl 122 (635)
.++|+|+.+|-.|++.-++..|.+.+++. +.+ +++.+.
T Consensus 378 ~kkilvVC~sG~GsS~m~~~~l~~~l~~~--~i~~i~i~~~ 416 (639)
T PRK15083 378 VRKIIVACDAGMGSSAMGAGVLRKKVQDA--GLSQISVTNS 416 (639)
T ss_pred cCEEEEECCCCccHHHHHHHHHHHHHHHc--CCCeeEEEEe
Confidence 57899999999999999999999999876 333 555543
No 259
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=22.13 E-value=1.4e+02 Score=32.08 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=27.5
Q ss_pred CCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCce
Q 006697 82 GKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAA 116 (635)
Q Consensus 82 ~~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~ 116 (635)
+.++|+|+++|-.|--...|+.|+++|+++ |..
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~--g~~ 35 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQK--GIK 35 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhc--CCC
Confidence 367899999998768888899999999877 554
No 260
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.64 E-value=9.6e+02 Score=25.26 Aligned_cols=118 Identities=10% Similarity=0.121 Sum_probs=75.5
Q ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCc--hHHHhhhccC---CeEEEEEecC--------
Q 006697 83 KTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDD--EQYEEKLKKE---TLAFFMVATY-------- 149 (635)
Q Consensus 83 ~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~--~~~~~~l~~~---~~vif~~sTy-------- 149 (635)
..++.|+....-..+..|++...+.+++- |+.++++.+.+-..++ ...+.++..+ +.+++-.|--
T Consensus 31 ~P~Laii~vg~d~as~~Yv~~k~k~a~~~--Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i 108 (284)
T PRK14170 31 KPGLAVVLVGDNQASRTYVRNKQKRTEEA--GMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKV 108 (284)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHH
Confidence 45788888888888999999888888877 8888888886543222 1123333332 3455554422
Q ss_pred ----------------C--------CCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHH
Q 006697 150 ----------------G--------DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELC 205 (635)
Q Consensus 150 ----------------g--------~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~ 205 (635)
+ .+-.|-++..-+++|+... ..++|+++.|+|-+ +-.++=+...|.
T Consensus 109 ~~~I~p~KDVDGl~p~N~g~l~~~~~~~~PcTp~avi~lL~~~~---i~l~Gk~vvVvGrS-------~iVGkPla~lL~ 178 (284)
T PRK14170 109 IDTISYDKDVDGFHPVNVGNLFIGKDSFVPCTPAGIIELIKSTG---TQIEGKRAVVIGRS-------NIVGKPVAQLLL 178 (284)
T ss_pred HhccCcccCcccCChhhhhHHhCCCCCCCCCCHHHHHHHHHHhC---CCCCCCEEEEECCC-------CcchHHHHHHHH
Confidence 1 1124555666666666543 23889999999843 234777888888
Q ss_pred HCCCEEe
Q 006697 206 KQGGARL 212 (635)
Q Consensus 206 ~lGa~~v 212 (635)
+.||+..
T Consensus 179 ~~~atVt 185 (284)
T PRK14170 179 NENATVT 185 (284)
T ss_pred HCCCEEE
Confidence 8888753
No 261
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=21.55 E-value=9.3e+02 Score=25.09 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=32.5
Q ss_pred hHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEeec
Q 006697 157 NAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLVP 214 (635)
Q Consensus 157 na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~~ 214 (635)
.+....+++.+. .+++++++.. .|.+-....+.+.+.++++|.+.+..
T Consensus 119 ~~~~~~~~~~~~-------~~~~vail~~---d~~~g~~~~~~~~~~~~~~G~~vv~~ 166 (334)
T cd06356 119 QFSTLVPYMMEK-------YGKKVYTIAA---DYNFGQISAEWVRKIVEENGGEVVGE 166 (334)
T ss_pred HHHHHHHHHHHc-------cCCeEEEECC---CchhhHHHHHHHHHHHHHcCCEEEee
Confidence 456677787653 2367888873 34444556778888999999987643
No 262
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=21.46 E-value=4.4e+02 Score=27.31 Aligned_cols=89 Identities=9% Similarity=-0.001 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhcc-C--CeEEEEEecCCCCCCChhHHHHHH---HHhcCCC
Q 006697 97 AEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKK-E--TLAFFMVATYGDGEPTDNAARFYK---WFTEGND 170 (635)
Q Consensus 97 te~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~-~--~~vif~~sTyg~G~~p~na~~F~~---~L~~~~~ 170 (635)
-.++|+.|.+.+.+. |+.+...+--..|..--.-+.-+.. . .+|-+...++-.. ..+.++.++ .|.....
T Consensus 89 d~~LA~~i~~~l~~~--g~~~~~~~~~~lDHG~~vPL~~l~p~~~iPvV~isin~~~~p--~~~~~~~~~lG~al~~~i~ 164 (268)
T cd07367 89 HREFARAFVRQAAED--GFDLAQAEELRPDHGVMVPLLFMGPKLDIPVVPLIVNINTDP--APSPRRCWALGKVLAQYVE 164 (268)
T ss_pred CHHHHHHHHHHHHHc--CCCeeeecCccCCcchhchHHHhCCCCCCCEEEEEecccCCC--CCCHHHHHHHHHHHHHHHH
Confidence 466899999999888 7765443211222211000111222 2 2333333333222 223344443 3444210
Q ss_pred CCCCCCCceEEEEEecCcch
Q 006697 171 RGPWLQQLKFGVFGLGNRQY 190 (635)
Q Consensus 171 ~~~~l~~~~~aVFGlGds~Y 190 (635)
+ -+-.+++++|+|+|+.+.
T Consensus 165 ~-~~~~d~rV~iiaSGgLSH 183 (268)
T cd07367 165 K-RRPAGERVAVIAAGGLSH 183 (268)
T ss_pred h-cCCCCCcEEEEEcccccC
Confidence 0 001578999999999886
No 263
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.45 E-value=9.7e+02 Score=25.23 Aligned_cols=117 Identities=9% Similarity=0.033 Sum_probs=78.6
Q ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCc-Cc-hHHHhhhccC---CeEEEEEecC---------
Q 006697 84 TKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAM-DD-EQYEEKLKKE---TLAFFMVATY--------- 149 (635)
Q Consensus 84 ~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~-~~-~~~~~~l~~~---~~vif~~sTy--------- 149 (635)
.++.|+....--.+..|++...+.+++- |+.++++.+.+... ++ ...+.++.++ +.+++-.|=-
T Consensus 34 P~Laii~vg~d~as~~Yv~~k~k~~~~~--Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~ 111 (284)
T PRK14177 34 PKLATILVGNNPASETYVSMKVKACHKV--GMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAF 111 (284)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHHc--CCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHH
Confidence 5677887777778999999999988887 89999988865422 22 1133334332 4566665521
Q ss_pred ----------------------C-CCCCChhHHHHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHH
Q 006697 150 ----------------------G-DGEPTDNAARFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCK 206 (635)
Q Consensus 150 ----------------------g-~G~~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~ 206 (635)
| .+-.|-++..-+++|+.... .++|+++.|+|-+ +-.++=+...|.+
T Consensus 112 ~~I~p~KDVDGl~~~n~g~l~~g~~~~~PcTp~avi~ll~~y~i---~l~Gk~vvViGrS-------~iVGkPla~lL~~ 181 (284)
T PRK14177 112 DRIALEKDVDGVTTLSFGKLSMGVETYLPCTPYGMVLLLKEYGI---DVTGKNAVVVGRS-------PILGKPMAMLLTE 181 (284)
T ss_pred hccCcccccccCChhhHHHHHcCCCCCCCCCHHHHHHHHHHhCC---CCCCCEEEEECCC-------CcchHHHHHHHHH
Confidence 1 12246677777777776543 3899999999832 3357888888888
Q ss_pred CCCEEe
Q 006697 207 QGGARL 212 (635)
Q Consensus 207 lGa~~v 212 (635)
.||+..
T Consensus 182 ~~atVt 187 (284)
T PRK14177 182 MNATVT 187 (284)
T ss_pred CCCEEE
Confidence 888754
No 264
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=21.29 E-value=1.6e+02 Score=29.17 Aligned_cols=38 Identities=8% Similarity=0.244 Sum_probs=29.2
Q ss_pred EEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccCC
Q 006697 298 NVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVENC 341 (635)
Q Consensus 298 ~V~~~~~L~~~~~~r~~~hie~di~~~~l~Y~~GD~l~I~p~N~ 341 (635)
+|+..+.++ .++++++|..++ .+.|+||.++.|..++.
T Consensus 2 ~v~~~~~~t-----~~~~~l~l~~~~-~~~~~pGQ~v~l~~~~~ 39 (224)
T cd06189 2 KVESIEPLN-----DDVYRVRLKPPA-PLDFLAGQYLDLLLDDG 39 (224)
T ss_pred EEEEEEeCC-----CceEEEEEecCC-CcccCCCCEEEEEcCCC
Confidence 456666655 368899998765 68999999999997653
No 265
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=21.25 E-value=1.4e+02 Score=28.79 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=26.5
Q ss_pred CCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEee
Q 006697 173 PWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARLV 213 (635)
Q Consensus 173 ~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v~ 213 (635)
..+.+++++|+|+| .+++.+.++|+.+|++.++
T Consensus 32 ~~l~g~tvgIiG~G--------~IG~~vA~~l~~fG~~V~~ 64 (178)
T PF02826_consen 32 RELRGKTVGIIGYG--------RIGRAVARRLKAFGMRVIG 64 (178)
T ss_dssp S-STTSEEEEESTS--------HHHHHHHHHHHHTT-EEEE
T ss_pred cccCCCEEEEEEEc--------CCcCeEeeeeecCCceeEE
Confidence 45999999999954 5789999999999997654
No 266
>PRK04148 hypothetical protein; Provisional
Probab=21.15 E-value=2e+02 Score=26.73 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=25.8
Q ss_pred HHHHHHhcCCCCCCCCCCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCEEe
Q 006697 160 RFYKWFTEGNDRGPWLQQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGARL 212 (635)
Q Consensus 160 ~F~~~L~~~~~~~~~l~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~~v 212 (635)
.+.+||.+.-.. .+++++.++|+| +- ..+...|.++|.+.+
T Consensus 3 ~i~~~l~~~~~~---~~~~kileIG~G-fG--------~~vA~~L~~~G~~Vi 43 (134)
T PRK04148 3 TIAEFIAENYEK---GKNKKIVELGIG-FY--------FKVAKKLKESGFDVI 43 (134)
T ss_pred HHHHHHHHhccc---ccCCEEEEEEec-CC--------HHHHHHHHHCCCEEE
Confidence 455666553222 456899999998 22 244567778887554
No 267
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=21.10 E-value=1.2e+02 Score=32.62 Aligned_cols=63 Identities=11% Similarity=0.192 Sum_probs=43.7
Q ss_pred CCCCccccccCCCCCCCCCeEEEEEEEEEecCCCCCcccCccchHHhhcCCCCCCCCccEEEEEeeCCCCcCC-----CC
Q 006697 467 PHLQPRYYSISSSPRFAPDRVHVTCALVYGPTPTGRIHKGVCSTWMKNAIPLEGNGDCSWAPIFIRPSNFKLP-----AN 541 (635)
Q Consensus 467 p~l~pR~YSIsSsp~~~~~~i~ltv~~v~~~~~~g~~~~G~~S~~L~~l~~g~~~~~~~~v~i~~~~g~F~lp-----~~ 541 (635)
|...+|+|-+--. -+|=.+.. .|--|.||+.|+.| +.|.+-...|+-+-- .-
T Consensus 218 pYva~RPFRVNAG------aVhaYv~~-----------pgg~T~YLsEL~sG------~eVlvVd~~G~tR~~~VGRvKI 274 (344)
T PRK02290 218 PYVASRPFRVNAG------AVHAYVRV-----------PGDKTRYLSELRSG------DEVLVVDADGNTREAIVGRVKI 274 (344)
T ss_pred CCccCCCeeEecC------cceeEEEc-----------CCCcchhhHhhcCC------CEEEEEeCCCCEEEEEeeEEEE
Confidence 6667899888644 45655654 47779999999999 788777666654321 01
Q ss_pred CCCcEEEEecC
Q 006697 542 PSVPIIMVGPG 552 (635)
Q Consensus 542 ~~~piImIg~G 552 (635)
..+|+++|=+=
T Consensus 275 E~RPL~lIeAe 285 (344)
T PRK02290 275 EKRPLLLIEAE 285 (344)
T ss_pred eeccEEEEEEE
Confidence 35899999763
No 268
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=20.93 E-value=2e+02 Score=28.49 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=30.4
Q ss_pred eEEEEEeEEecCCCCCCceEEEEEEecCCCCccCCCCeEEEeccC
Q 006697 296 RVNVAVRRELHKPDSDRSCIHLEFDVSGTGITYETGDHVGVYVEN 340 (635)
Q Consensus 296 ~a~V~~~~~L~~~~~~r~~~hie~di~~~~l~Y~~GD~l~I~p~N 340 (635)
.++|++.+.++. +++.+.|..+. .+.|+||+|+.|..+.
T Consensus 2 ~~~v~~~~~~t~-----~~~~~~l~~~~-~~~~~pGQ~~~l~~~~ 40 (227)
T cd06213 2 RGTIVAQERLTH-----DIVRLTVQLDR-PIAYKAGQYAELTLPG 40 (227)
T ss_pred eEEEEEEeecCC-----CEEEEEEecCC-CCCcCCCCEEEEEeCC
Confidence 477888888863 67888887653 5789999999999754
No 269
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=20.53 E-value=4.5e+02 Score=27.45 Aligned_cols=88 Identities=13% Similarity=0.144 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccC-C-----eEEEEEecCCCCCCChhHHHHHHH---Hhc
Q 006697 97 AEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKE-T-----LAFFMVATYGDGEPTDNAARFYKW---FTE 167 (635)
Q Consensus 97 te~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~-~-----~vif~~sTyg~G~~p~na~~F~~~---L~~ 167 (635)
..++|++|++.+.+. |+.+...+--..|..--.-+.-+... + +|-+.+.+. ..|-.++++.++. |..
T Consensus 97 ~~~LA~~i~~~~~~~--g~~~~~~~~~~lDHG~~vPL~~l~p~~~~~p~pVV~vsvn~~--~~p~~~~~~~~~lG~al~~ 172 (277)
T cd07364 97 HPDLAWHIAQSLILD--DFDMTIVNEMDVDHGLTVPLSIMYGQPEAWPCKVIPLCVNVV--QYPQPTGKRCFALGKAIRR 172 (277)
T ss_pred CHHHHHHHHHHHHHc--CCCEEecCCCCCCcchhhhHHHhCCccccCCCCeEEEEeccC--CCCCCCHHHHHHHHHHHHH
Confidence 578899999999887 77665442112222210001112221 1 221222222 2222234445443 443
Q ss_pred CCCCCCCCCCceEEEEEecCcch
Q 006697 168 GNDRGPWLQQLKFGVFGLGNRQY 190 (635)
Q Consensus 168 ~~~~~~~l~~~~~aVFGlGds~Y 190 (635)
...+ .-+..+++|+|+|+.+.
T Consensus 173 ~i~~--~~rd~rV~iIaSG~lSH 193 (277)
T cd07364 173 AVES--YDEDLKVAIWGTGGMSH 193 (277)
T ss_pred HHHh--cCcCCCEEEEecCcccc
Confidence 2111 11467899999999886
No 270
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=20.45 E-value=5.4e+02 Score=29.94 Aligned_cols=91 Identities=22% Similarity=0.253 Sum_probs=54.1
Q ss_pred cCCCeEEEEEECCCchHHHHHHHHHHHHHhhhCCceEEEEeCCCCCcCchHHHhhhccC-CeEEEEEecCCCCCCChhHH
Q 006697 81 AGKTKVTVFYGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAMDDEQYEEKLKKE-TLAFFMVATYGDGEPTDNAA 159 (635)
Q Consensus 81 ~~~~~v~I~YgSqtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~~~~~~~~~~~~l~~~-~~vif~~sTyg~G~~p~na~ 159 (635)
++..-.+|.||++...|.+.|+.|.++ . |+.++|+|+--..+=|.+.+.++.+. +.+|.+=..+-.|.. ..
T Consensus 459 ~g~dvtiia~G~~v~~Al~Aa~~L~~~---~--gi~~~Vid~~~ikPlD~~~i~~~~~~~~~vvtvEe~~~~GG~---gs 530 (581)
T PRK12315 459 AGEKVAILALGDFYELGEKVAKKLKEE---L--GIDATLINPKFITGLDEELLEKLKEDHELVVTLEDGILDGGF---GE 530 (581)
T ss_pred cCCCEEEEEEchHHHHHHHHHHHHhhh---c--CCCEEEEecCcCCCCCHHHHHHHHhhCCEEEEEcCCCcCCCH---HH
Confidence 345557788999998888888877542 1 46788998877665554445555544 555555433333332 22
Q ss_pred HHHHHHhcCCCCCCCCCCceEEEEEecC
Q 006697 160 RFYKWFTEGNDRGPWLQQLKFGVFGLGN 187 (635)
Q Consensus 160 ~F~~~L~~~~~~~~~l~~~~~aVFGlGd 187 (635)
...+++.+. ++++-.+|+-|
T Consensus 531 ~v~~~l~~~--------~~~~~~~gi~d 550 (581)
T PRK12315 531 KIARYYGNS--------DMKVLNYGAKK 550 (581)
T ss_pred HHHHHHHcC--------CCeEEEecCCC
Confidence 344555442 24566777644
No 271
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=20.40 E-value=1.2e+02 Score=25.42 Aligned_cols=48 Identities=15% Similarity=0.203 Sum_probs=30.0
Q ss_pred CChhHHHHHHHHhcCCCCCCCCCCceEEEEEe-cC---cchhHHHHHHHHHHHHHHHCCCE
Q 006697 154 PTDNAARFYKWFTEGNDRGPWLQQLKFGVFGL-GN---RQYEHFNKIGIVLDEELCKQGGA 210 (635)
Q Consensus 154 ~p~na~~F~~~L~~~~~~~~~l~~~~~aVFGl-Gd---s~Y~~f~~~~k~ld~~L~~lGa~ 210 (635)
-|+.+...++.|++.. -.++.++|||. +| +.++... .+.+.+.++.-.
T Consensus 23 Np~s~~a~l~~l~~~~-----~~~~~i~V~G~~~d~g~~~~~~~~----~~~~~~~~~~d~ 74 (91)
T PF02875_consen 23 NPDSIRALLEALKELY-----PKGRIIAVFGAMGDLGSKDKDFHE----EIGELAAQLADV 74 (91)
T ss_dssp SHHHHHHHHHHHHHHC-----TTSEEEEEEEEBTT-HTSHHHCHH----HHHHHHTTCSSE
T ss_pred CHHHHHHHHHHHHHhc-----cCCcEEEEEccccccccccHHHHH----HHHHHHHhcCCE
Confidence 4577888888887753 25789999994 45 5553333 344444455544
No 272
>cd07370 HPCD The Class III extradiol dioxygenase, homoprotocatechuate 2,3-dioxygenase, catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate. 3,4-dihydroxyphenylacetate (homoprotocatechuate) 2,3-dioxygenase (HPCD) catalyzes the key ring cleavage step in the metabolism of homoprotocatechuate (hpca), a central intermediate in the bacterial degradation of aromatic compounds. The enzyme incorporates both atoms of molecular oxygen into hpca, resulting in aromatic ring-opening to yield alpha-hydroxy-delta-carboxymethyl cis-muconic semialdehyde. HPCD is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon.
Probab=20.18 E-value=5.3e+02 Score=26.77 Aligned_cols=89 Identities=8% Similarity=0.055 Sum_probs=44.9
Q ss_pred CCchHHHHHHHHHHHHHhhhCCceEEEEeCCC--CCcCchHHHhhhcc-CCe-EEEEEecCCCCCCChhHHHHHHHHhcC
Q 006697 93 QTGTAEGFAKALAEEIKARYEKAAVKVVDLDD--YAMDDEQYEEKLKK-ETL-AFFMVATYGDGEPTDNAARFYKWFTEG 168 (635)
Q Consensus 93 qtGtte~~A~~l~~~l~~~~~g~~~~v~dl~~--~~~~~~~~~~~l~~-~~~-vif~~sTyg~G~~p~na~~F~~~L~~~ 168 (635)
..|+ .++|++|.+.+... |+.+....-.+ +|..--.-+.-+.. .++ +|-++-.. . ..+..+.+|=+.|.+.
T Consensus 90 ~~gd-~ela~~i~~~~~~~--g~~~~~~~~~~~~lDhg~~vPL~~l~p~~~~pvV~is~~~-~-~~~~~~~~lG~al~~~ 164 (280)
T cd07370 90 YAGD-PELAHLIAEEATEH--GVKTLAHEDPSLPLEYGTLVPMRFMNEDDHFKVVSVAVWC-T-HDIEESRRLGEAIRRA 164 (280)
T ss_pred CCCC-HHHHHHHHHHHHHC--CCCeeeecCCCCCCCeeHhhHHHHhCCCCCceEEEEeecC-C-CCHHHHHHHHHHHHHH
Confidence 4444 45888998888877 66554331111 22211000011222 232 22222211 1 3445555666666653
Q ss_pred CCCCCCCCCceEEEEEecCcch
Q 006697 169 NDRGPWLQQLKFGVFGLGNRQY 190 (635)
Q Consensus 169 ~~~~~~l~~~~~aVFGlGds~Y 190 (635)
.. -.+++++|+|.||-+.
T Consensus 165 ~~----~~~~~v~iIaSG~lsH 182 (280)
T cd07370 165 IA----ASDRRVALLASGSLSH 182 (280)
T ss_pred HH----hcCCCEEEEEeccccc
Confidence 11 1467899999999885
No 273
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=20.04 E-value=5.4e+02 Score=21.70 Aligned_cols=74 Identities=14% Similarity=0.069 Sum_probs=32.2
Q ss_pred hcCCCeEEEEEECC-CchHHHHHHHHH--HHHHhhhC-CceEEEEeCCCCCcCchHHHhhh--ccCCeEEEEEecCCCCC
Q 006697 80 AAGKTKVTVFYGTQ-TGTAEGFAKALA--EEIKARYE-KAAVKVVDLDDYAMDDEQYEEKL--KKETLAFFMVATYGDGE 153 (635)
Q Consensus 80 ~~~~~~v~I~YgSq-tGtte~~A~~l~--~~l~~~~~-g~~~~v~dl~~~~~~~~~~~~~l--~~~~~vif~~sTyg~G~ 153 (635)
.+.++.++|.|.+- =+.++.+...+. +++.+.++ ++.+-.+|.++-+.....+...+ .....++|+-+ |+|.
T Consensus 8 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~--~~g~ 85 (104)
T cd02953 8 LAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP--GGEP 85 (104)
T ss_pred HHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC--CCCC
Confidence 34455566555554 466666664331 22333222 23333335443221111233222 23445666655 5666
Q ss_pred CC
Q 006697 154 PT 155 (635)
Q Consensus 154 ~p 155 (635)
.+
T Consensus 86 ~~ 87 (104)
T cd02953 86 EP 87 (104)
T ss_pred CC
Confidence 54
No 274
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=20.00 E-value=3.2e+02 Score=32.26 Aligned_cols=82 Identities=24% Similarity=0.221 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhhCCceEEEEeCCCCCcC-c----hHHHhhhccCCeEEEEEecCCCCCCChhHHHHHHHHhcCCCCCCCC
Q 006697 101 AKALAEEIKARYEKAAVKVVDLDDYAMD-D----EQYEEKLKKETLAFFMVATYGDGEPTDNAARFYKWFTEGNDRGPWL 175 (635)
Q Consensus 101 A~~l~~~l~~~~~g~~~~v~dl~~~~~~-~----~~~~~~l~~~~~vif~~sTyg~G~~p~na~~F~~~L~~~~~~~~~l 175 (635)
+..+++.|.+. |..+-.+.+=++... + ...+..+..++.+||.|+.- .+.|++++... ++
T Consensus 15 a~~la~~L~~~--G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS~nA--------V~~~~~~l~~~-----~~ 79 (656)
T PRK06975 15 SAALAAQLAAA--GLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVSPNA--------VDRALARLDAI-----WP 79 (656)
T ss_pred HHHHHHHHHHc--CCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEECHHH--------HHHHHHHHHhh-----Cc
Confidence 45555666666 665554433222111 1 11334577889888888643 55578887653 24
Q ss_pred CCceEEEEEecCcchhHHHHHHHHHHHHHHHCCCE
Q 006697 176 QQLKFGVFGLGNRQYEHFNKIGIVLDEELCKQGGA 210 (635)
Q Consensus 176 ~~~~~aVFGlGds~Y~~f~~~~k~ld~~L~~lGa~ 210 (635)
.++++++.| +.-.+.|++.|..
T Consensus 80 ~~~~i~AVG-------------~~Ta~aL~~~Gi~ 101 (656)
T PRK06975 80 HALPVAVVG-------------PGSVAALARHGIA 101 (656)
T ss_pred cCCeEEEEC-------------HHHHHHHHHcCCC
Confidence 567888887 3334456677765
Done!