Your job contains 1 sequence.
>006698
MKSIKDIDPPFATSPSRRAEWREYNNVDPSFLDDLNSRDSGFDSQTGCDPFTHAQGTVWE
LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT
LVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL
MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE
GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG
REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL
QPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEA
GIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKR
QSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQ
KRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMA
QLYNNPSETLINAIIPQPKETELIETFGEFLNKSS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 006698
(635 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2201006 - symbol:chr31 "chromatin remodeling 3... 864 3.3e-136 2
TAIR|locus:2087223 - symbol:CHR40 "chromatin remodeling 4... 1163 4.2e-118 1
TAIR|locus:2149957 - symbol:CHR42 "chromatin remodeling 4... 453 2.1e-77 2
TAIR|locus:2096499 - symbol:CHR38 "chromatin remodeling 3... 428 1.7e-71 2
TAIR|locus:2050039 - symbol:CHR34 "chromatin remodeling 3... 320 1.4e-53 2
TAIR|locus:2042619 - symbol:DRD1 "DEFECTIVE IN RNA-DIRECT... 316 1.5e-52 2
UNIPROTKB|B4NXB8 - symbol:okr "DNA repair and recombinati... 230 2.6e-34 3
ZFIN|ZDB-GENE-040426-968 - symbol:rad54l "RAD54-like (S. ... 397 2.8e-34 1
UNIPROTKB|E1C963 - symbol:RAD54L2 "Uncharacterized protei... 258 2.7e-33 3
UNIPROTKB|F1NBD4 - symbol:RAD54L "DNA repair and recombin... 384 8.9e-33 1
UNIPROTKB|F1NX31 - symbol:RAD54L "DNA repair and recombin... 384 9.2e-33 1
ZFIN|ZDB-GENE-030131-3097 - symbol:rad54l2 "RAD54-like 2 ... 267 1.1e-32 3
UNIPROTKB|O12944 - symbol:RAD54L "DNA repair and recombin... 382 1.5e-32 1
DICTYBASE|DDB_G0293120 - symbol:DDB_G0293120 "CHR group p... 247 4.5e-32 2
WB|WBGene00013792 - symbol:Y116A8C.13 species:6239 "Caeno... 252 5.1e-32 3
FB|FBgn0039338 - symbol:XNP "XNP" species:7227 "Drosophil... 235 5.1e-31 3
UNIPROTKB|Q92698 - symbol:RAD54L "DNA repair and recombin... 368 6.4e-31 1
UNIPROTKB|A1L4Z4 - symbol:RAD54L "Uncharacterized protein... 367 8.3e-31 1
MGI|MGI:1933196 - symbol:Rad54l2 "RAD54 like 2 (S. cerevi... 241 1.8e-30 3
UNIPROTKB|F1PB65 - symbol:RAD54L2 "Uncharacterized protei... 237 2.5e-30 3
UNIPROTKB|E1BEK4 - symbol:Bt.109773 "Uncharacterized prot... 240 4.9e-30 3
UNIPROTKB|F1S3V8 - symbol:RAD54L "Uncharacterized protein... 359 6.6e-30 1
RGD|1310600 - symbol:Rad54l "RAD54 like (S. cerevisiae)" ... 232 1.2e-29 3
RGD|1561889 - symbol:Rad54l2 "Rad54 like 2 (S. cerevisiae... 232 1.2e-29 3
UNIPROTKB|H0Y760 - symbol:RAD54L2 "Helicase ARIP4" specie... 231 1.2e-29 3
UNIPROTKB|Q9Y4B4 - symbol:RAD54L2 "Helicase ARIP4" specie... 231 1.9e-29 3
ZFIN|ZDB-GENE-030912-11 - symbol:atrx "alpha thalassemia/... 223 2.4e-29 2
UNIPROTKB|Q9DG67 - symbol:RAD54B "DNA repair and recombin... 235 7.3e-29 3
UNIPROTKB|Q29KH2 - symbol:okr "DNA repair and recombinati... 232 1.1e-28 2
UNIPROTKB|B4M9A8 - symbol:okr "DNA repair and recombinati... 231 1.1e-28 2
TAIR|locus:2094083 - symbol:RAD54 "homolog of RAD54" spec... 227 1.3e-28 3
SGD|S000003131 - symbol:RAD54 "DNA-dependent ATPase that ... 240 1.7e-28 4
WB|WBGene00007761 - symbol:rad-26 species:6239 "Caenorhab... 215 2.0e-28 3
UNIPROTKB|B4KHL5 - symbol:okr "DNA repair and recombinati... 229 2.3e-28 2
UNIPROTKB|B4JCS7 - symbol:okr "DNA repair and recombinati... 233 4.5e-28 2
UNIPROTKB|B4GS98 - symbol:okr "DNA repair and recombinati... 226 4.9e-28 2
UNIPROTKB|B4MX21 - symbol:okr "DNA repair and recombinati... 226 4.9e-28 2
POMBASE|SPAC15A10.03c - symbol:rad54 "DNA-dependent ATPas... 241 8.4e-28 2
UNIPROTKB|F1RPI9 - symbol:LOC100514440 "Uncharacterized p... 220 9.0e-28 3
UNIPROTKB|E1C8H5 - symbol:ATRX "Uncharacterized protein" ... 232 1.9e-27 3
ASPGD|ASPL0000027956 - symbol:AN10677 species:162425 "Eme... 238 2.0e-27 3
UNIPROTKB|F1P5M3 - symbol:RAD54B "DNA repair and recombin... 222 2.1e-27 3
DICTYBASE|DDB_G0282997 - symbol:rad54 "CHR group protein"... 210 2.8e-27 3
FB|FBgn0034976 - symbol:CG4049 species:7227 "Drosophila m... 209 2.9e-27 2
CGD|CAL0001568 - symbol:RAD54 species:5476 "Candida albic... 242 4.4e-27 2
UNIPROTKB|Q5AKX3 - symbol:RAD54 "Putative uncharacterized... 242 4.4e-27 2
MGI|MGI:103067 - symbol:Atrx "alpha thalassemia/mental re... 225 4.6e-27 3
WB|WBGene00006961 - symbol:xnp-1 species:6239 "Caenorhabd... 204 7.8e-27 2
UNIPROTKB|F1LM36 - symbol:F1LM36 "Uncharacterized protein... 222 9.7e-27 3
POMBASE|SPBP35G2.10 - symbol:mit1 "SHREC complex subunit ... 220 2.0e-26 3
UNIPROTKB|F1MSA4 - symbol:RAD54B "Uncharacterized protein... 234 2.7e-26 3
UNIPROTKB|F1RY50 - symbol:RAD54B "Uncharacterized protein... 234 5.1e-26 3
UNIPROTKB|K7GSF7 - symbol:LOC100514440 "Uncharacterized p... 216 6.2e-26 3
UNIPROTKB|F1MQ85 - symbol:ATRX "Uncharacterized protein" ... 216 7.2e-26 3
UNIPROTKB|F1PKC1 - symbol:ATRX "Uncharacterized protein" ... 216 7.3e-26 3
UNIPROTKB|P46100 - symbol:ATRX "Transcriptional regulator... 216 7.3e-26 3
UNIPROTKB|F1PW14 - symbol:RAD54B "Uncharacterized protein... 238 1.1e-25 3
UNIPROTKB|Q9Y620 - symbol:RAD54B "DNA repair and recombin... 235 1.1e-25 3
WB|WBGene00002637 - symbol:let-418 species:6239 "Caenorha... 209 1.3e-25 2
UNIPROTKB|G5EBZ4 - symbol:let-418 "Protein let-418" speci... 209 1.3e-25 2
CGD|CAL0004359 - symbol:RDH54 species:5476 "Candida albic... 257 2.7e-25 2
MGI|MGI:894697 - symbol:Rad54l "RAD54 like (S. cerevisiae... 215 4.2e-25 2
UNIPROTKB|B3NAN8 - symbol:okr "DNA repair and recombinati... 316 4.7e-25 1
GENEDB_PFALCIPARUM|PF08_0126 - symbol:PF08_0126 "DNA repa... 209 5.0e-25 3
UNIPROTKB|Q8IAN4 - symbol:PF08_0126 "DNA repair protein r... 209 5.0e-25 3
FB|FBgn0002989 - symbol:okr "okra" species:7227 "Drosophi... 315 6.2e-25 1
UNIPROTKB|K7EMY3 - symbol:CHD5 "Chromodomain-helicase-DNA... 192 9.4e-25 2
RGD|1582725 - symbol:Chd5 "chromodomain helicase DNA bind... 192 9.6e-25 2
ASPGD|ASPL0000055935 - symbol:AN0855 species:162425 "Emer... 221 9.7e-25 3
UNIPROTKB|B3MMA5 - symbol:okr "DNA repair and recombinati... 311 1.7e-24 1
MGI|MGI:88393 - symbol:Chd1 "chromodomain helicase DNA bi... 213 1.9e-24 3
FB|FBgn0023395 - symbol:Chd3 "Chd3" species:7227 "Drosoph... 211 2.0e-24 2
UNIPROTKB|Q71Z25 - symbol:LMOf2365_1665 "Helicase, Snf2 f... 241 2.2e-24 3
UNIPROTKB|O14646 - symbol:CHD1 "Chromodomain-helicase-DNA... 213 2.5e-24 3
WB|WBGene00004298 - symbol:rad-54 species:6239 "Caenorhab... 220 2.8e-24 2
UNIPROTKB|F1MGF2 - symbol:CHD1 "Uncharacterized protein" ... 213 3.0e-24 3
UNIPROTKB|F1RIM3 - symbol:CHD5 "Uncharacterized protein" ... 192 3.1e-24 2
DICTYBASE|DDB_G0285117 - symbol:rad54b "CHR group protein... 187 3.2e-24 3
UNIPROTKB|E2R1M3 - symbol:CHD5 "Uncharacterized protein" ... 192 3.5e-24 2
UNIPROTKB|E2QUI5 - symbol:CHD1 "Uncharacterized protein" ... 213 4.0e-24 3
UNIPROTKB|F1PJC9 - symbol:RAD54L "Uncharacterized protein... 208 4.0e-24 2
UNIPROTKB|B6ZLK2 - symbol:CHD1 "Chromodomain-helicase-DNA... 213 4.0e-24 3
UNIPROTKB|Q8TDI0 - symbol:CHD5 "Chromodomain-helicase-DNA... 192 4.1e-24 2
FB|FBgn0262519 - symbol:Mi-2 species:7227 "Drosophila mel... 195 4.1e-24 2
UNIPROTKB|J9P6Y8 - symbol:CHD1 "Uncharacterized protein" ... 213 4.6e-24 3
UNIPROTKB|F1SSZ2 - symbol:CHD5 "Uncharacterized protein" ... 190 4.7e-24 2
UNIPROTKB|G4N791 - symbol:MGG_06447 "SNF2 family ATP-depe... 187 5.5e-24 2
UNIPROTKB|F1MFF9 - symbol:Bt.62145 "Uncharacterized prote... 190 6.0e-24 2
ASPGD|ASPL0000068126 - symbol:cshA species:162425 "Emeric... 308 7.7e-24 1
UNIPROTKB|E7EU19 - symbol:RAD54L2 "Helicase ARIP4" specie... 231 1.2e-23 3
WB|WBGene00000482 - symbol:chd-3 species:6239 "Caenorhabd... 193 1.4e-23 2
UNIPROTKB|Q22516 - symbol:chd-3 "Chromodomain-helicase-DN... 193 1.4e-23 2
ZFIN|ZDB-GENE-060810-50 - symbol:rad54b "RAD54 homolog B ... 209 1.7e-23 3
CGD|CAL0000882 - symbol:orf19.607 species:5476 "Candida a... 217 2.6e-23 2
GENEDB_PFALCIPARUM|PF11_0053 - symbol:PF11_0053 "PfSNF2L"... 253 2.9e-23 3
UNIPROTKB|Q8IIW0 - symbol:PF11_0053 "PfSNF2L" species:363... 253 2.9e-23 3
UNIPROTKB|F1NH78 - symbol:F1NH78 "Uncharacterized protein... 190 3.0e-23 2
UNIPROTKB|F5GWX5 - symbol:CHD4 "Chromodomain-helicase-DNA... 192 5.5e-23 2
UNIPROTKB|E2RHA0 - symbol:CHD4 "Uncharacterized protein" ... 192 5.5e-23 2
UNIPROTKB|Q14839 - symbol:CHD4 "Chromodomain-helicase-DNA... 192 5.5e-23 2
WARNING: Descriptions of 424 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2201006 [details] [associations]
symbol:chr31 "chromatin remodeling 31" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K10875 IPI:IPI00526301 RefSeq:NP_172040.2
UniGene:At.42396 ProteinModelPortal:F4I8S3 SMR:F4I8S3 PRIDE:F4I8S3
EnsemblPlants:AT1G05490.1 GeneID:837051 KEGG:ath:AT1G05490
OMA:DIREILM Uniprot:F4I8S3
Length = 1410
Score = 864 (309.2 bits), Expect = 3.3e-136, Sum P(2) = 3.3e-136
Identities = 196/420 (46%), Positives = 265/420 (63%)
Query: 223 DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
D++ IL+ PGL V DE HTPRN +C++K LS+++T++RI+LSGTPFQNNF EL N L
Sbjct: 995 DDIREILMGRPGLLVLDEAHTPRNQRSCIWKTLSKVETQKRILLSGTPFQNNFLELCNVL 1054
Query: 283 SLVRQEFGEVLR-TVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPFVNVH 341
L R ++ E L T++KSG ++K +L + I N+R + PFV+VH
Sbjct: 1055 GLARPKYLERLTSTLKKSGMTVTKRGKKNLGNEI----NNRG---IEELKAVMLPFVHVH 1107
Query: 342 KGTVLQESLPGLRHSVVILQPDEFQKRLCKAVE-----GVKSFVELNYCXXXXXXXXXXX 396
KG++LQ SLPGLR VV+L P E Q+R+ +++E K+ E +
Sbjct: 1108 KGSILQSSLPGLRECVVVLNPPELQRRVLESIEVTHNRKTKNVFETEHKLSLVSVHPSLV 1167
Query: 397 XQQFF---ESFDVDSAKLARLK---LDPEAGIKTRFLLILLELST--NEKVLVFSQYIEP 448
+ E +D A LA+LK LDP +KTRFL+ +EL EKVLVFSQYI+P
Sbjct: 1168 SRCKISEKERLSIDEALLAQLKKVRLDPNQSVKTRFLMEFVELCEVIKEKVLVFSQYIDP 1227
Query: 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGI 508
L LIM+ L RF W G+EVLYM GK + K+RQ+ IN NDP S+A++ LASTKAC EGI
Sbjct: 1228 LKLIMKHLVSRFKWNPGEEVLYMHGKLEQKQRQTLINEFNDPKSKAKVFLASTKACSEGI 1287
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
+LVGASRV+LLDVVWNP VERQAISRAYR+GQKR+V+ YHL+ T E K +QA+K
Sbjct: 1288 SLVGASRVILLDVVWNPAVERQAISRAYRIGQKRIVYTYHLVAKGTPEGPKYCKQAQKDR 1347
Query: 569 WSNMVFPSSDGGGNDQTTASEPL-EDKILEEMAQLYNNPSETLINAIIPQPKETELIETF 627
S +VF S + +E + EDK+L+ M + ++ + N I+ QPKE +L+E F
Sbjct: 1348 ISELVFACSSRHDKGKEKIAEAVTEDKVLDTMVE-HSKLGDMFDNLIV-QPKEADLVEGF 1405
Score = 507 (183.5 bits), Expect = 3.3e-136, Sum P(2) = 3.3e-136
Identities = 101/207 (48%), Positives = 134/207 (64%)
Query: 13 TSPSRRAEWREYNNVDPSFLDDLNSRDSGFDSQTGCDPFTHAQGTVWELVPRDVRKKMFP 72
T+ RR R SF+ L GC ++GTVW+ +P V+ +M+P
Sbjct: 770 TTRERRKFDRFEEEEGSSFIGKLGFDAPNNSLNEGC---VSSEGTVWDKIP-GVKSQMYP 825
Query: 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP 132
HQ+EGFEFIWKN+AG I L+ELK+ ++ GCI+SHAPGTGKT LT++FLQAY++ P
Sbjct: 826 HQQEGFEFIWKNLAGTIMLNELKDFENSDETGGCIMSHAPGTGKTRLTIIFLQAYLQCFP 885
Query: 133 RCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVG 192
C+PVIIAP S+LLTW EEFKKW I IPF+NL+ + +GKEN+ A+ L+ +
Sbjct: 886 DCKPVIIAPASLLLTWAEEFKKWNISIPFHNLSSLDFTGKENSAALGLLMQKNATARSNN 945
Query: 193 LIRYVKLYSWKMGTGILGLSYRLFEKL 219
IR VK+YSW ILG+SY L+EKL
Sbjct: 946 EIRMVKIYSWIKSKSILGISYNLYEKL 972
>TAIR|locus:2087223 [details] [associations]
symbol:CHR40 "chromatin remodeling 40" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009616 "virus
induced gene silencing" evidence=RCA] [GO:0009909 "regulation of
flower development" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0034968
"histone lysine methylation" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0004386 EMBL:AP000382
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K10875 IPI:IPI00526793 RefSeq:NP_189077.1 UniGene:At.37544
ProteinModelPortal:Q9LK10 SMR:Q9LK10 PaxDb:Q9LK10 PRIDE:Q9LK10
EnsemblPlants:AT3G24340.1 GeneID:822023 KEGG:ath:AT3G24340
TAIR:At3g24340 HOGENOM:HOG000153033 InParanoid:Q9LK10 OMA:TEVRTEK
PhylomeDB:Q9LK10 ProtClustDB:CLSN2914813 Genevestigator:Q9LK10
Uniprot:Q9LK10
Length = 1132
Score = 1163 (414.5 bits), Expect = 4.2e-118, P = 4.2e-118
Identities = 254/593 (42%), Positives = 363/593 (61%)
Query: 50 PFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIIS 109
P + +GTVW+ VP ++ ++PHQ+EGFEFIWKN+AG ++EL NS G GCIIS
Sbjct: 558 PLDNIEGTVWQYVP-GIKDTLYPHQQEGFEFIWKNLAGTTKINEL-NSVGVKGSGGCIIS 615
Query: 110 HAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPEL 169
H GTGKT LT+VFLQ+Y+K P P++IAP +++ TWE+E +KW ++IPFYN+N +L
Sbjct: 616 HKAGTGKTRLTVVFLQSYLKRFPNSHPMVIAPATLMRTWEDEVRKWNVNIPFYNMNSLQL 675
Query: 170 SGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGI- 228
SG E+ AV+ ++ + IR VKL SW ILG+SY L+EKL + G+
Sbjct: 676 SGYEDAEAVSRLEGNRHHNS----IRMVKLVSWWKQKSILGISYPLYEKLAANKNTEGMQ 731
Query: 229 -----LLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS 283
L++LPGL V DEGHTPRN + ++K L+ ++T +RI LSGT FQNNF+EL N L
Sbjct: 732 VFRRMLVELPGLLVLDEGHTPRNQSSLIWKVLTEVRTEKRIFLSGTLFQNNFKELSNVLC 791
Query: 284 LVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPFVNVHKG 343
L R + T+ E+SK S G ++ IA FV+VH+G
Sbjct: 792 LARPADKD---TISSRIHELSKC------SQEGEHGRVNEENRIVDLKAMIAHFVHVHEG 842
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCXXXXXXXXXXXX---QQF 400
T+LQESLPGLR VV+L P QK++ ++ ++ E +
Sbjct: 843 TILQESLPGLRDCVVVLNPPFQQKKILDRIDTSQNTFEFEHKLSAVSVHPSLYLCCNPTK 902
Query: 401 FESFDVDSAKLA---RLKLDPEAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQ 455
E + A L RL+L E G+KT+FL+ + +S EKVLV+SQYI+ L LIMEQ
Sbjct: 903 KEDLVIGPATLGTLKRLRLKYEEGVKTKFLIDFIRISGTVKEKVLVYSQYIDTLKLIMEQ 962
Query: 456 LRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515
L +W EG+++L M GK + + RQ I+ N P S ++++LASTKAC EGI+LVGASR
Sbjct: 963 LIAECDWTEGEQILLMHGKVEQRDRQHMIDNFNKPDSGSKVLLASTKACSEGISLVGASR 1022
Query: 516 VVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFP 575
VV+LDVVWNP VE QAISRA+R+GQKR V +YHL+ +T EW+K +Q+ K S +VF
Sbjct: 1023 VVILDVVWNPSVESQAISRAFRIGQKRAVFIYHLMVKDTSEWNKYCKQSEKHRISELVFS 1082
Query: 576 SSDGGGNDQTTASEPL-EDKILEEMAQLYNNPSETLINAIIPQPKETELIETF 627
S++ D+ +E + +D+IL+EM + + + + I+ PK++++ +F
Sbjct: 1083 STNE--KDKPINNEVVSKDRILDEMVR--HEKLKHIFEKILYHPKKSDMNTSF 1131
>TAIR|locus:2149957 [details] [associations]
symbol:CHR42 "chromatin remodeling 42" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0007131
"reciprocal meiotic recombination" evidence=RCA] [GO:0033044
"regulation of chromosome organization" evidence=RCA] [GO:0042138
"meiotic DNA double-strand break formation" evidence=RCA]
[GO:0045132 "meiotic chromosome segregation" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002688
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K10875 IPI:IPI00518366 RefSeq:NP_197542.1
UniGene:At.31185 ProteinModelPortal:F4K493
EnsemblPlants:AT5G20420.1 GeneID:832164 KEGG:ath:AT5G20420
OMA:WHAHPSV PhylomeDB:F4K493 Uniprot:F4K493
Length = 1261
Score = 453 (164.5 bits), Expect = 2.1e-77, Sum P(2) = 2.1e-77
Identities = 112/322 (34%), Positives = 173/322 (53%)
Query: 4 IKDIDPPFATSPSRRAEWREYNNVD-PSFLDDLNSRDSGFDSQTGCDPFTHAQGT--VWE 60
IKD+ PFA E + D + L ++ F + A+ + VW
Sbjct: 611 IKDVSAPFAEHKKWTIETKHIEEDDIKTKLSHKEAQTKDFSMISDSSEMLAAEESDNVWA 670
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
L+P+ +++K+ HQR FEF+W+N+AG ++ L + TS G GC+ISH+PG GKT L
Sbjct: 671 LIPK-LKRKLHVHQRRAFEFLWRNVAGSVE-PSLMDPTS-GNIGGCVISHSPGAGKTFLI 727
Query: 121 LVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLN--KPELSGKENNGAV 178
+ FL +Y+KL P RP+++AP++ L TW +EF KW I +P + ++ + + K+N V
Sbjct: 728 IAFLTSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPVPVHLIHGRRTYCTFKQNK-TV 786
Query: 179 ALMDNRKRGRGKVGLIRYV-KLYSWKMGTGILGLSYRLFEKLVSGDE-------LSGILL 230
K R + ++ + K+ W +L + Y F L+ D ++ +L
Sbjct: 787 QFNGVPKPSRDVMHVLDCLEKIQKWHAHPSVLVMGYTSFTTLMREDSKFAHRKYMAKVLR 846
Query: 231 DLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF- 289
+ PGL V DEGH PR+ + + KAL ++ T RI+LSGT FQNNF E NTL L R +F
Sbjct: 847 ESPGLLVLDEGHNPRSTKSRLRKALMKVGTDLRILLSGTLFQNNFCEYFNTLCLARPKFI 906
Query: 290 GEVLRTVR---KSGREISKAKH 308
EVL + K+ ++KA H
Sbjct: 907 HEVLMELDQKFKTNHGVNKAPH 928
Score = 369 (135.0 bits), Expect = 2.1e-77, Sum P(2) = 2.1e-77
Identities = 87/261 (33%), Positives = 144/261 (55%)
Query: 348 ESLPGLRHSVVILQPDEFQ-KRLCKAVEGVKSF------VELNYCXXXXXXXXXXXXQQF 400
++LPGL+ +++ + Q K L K + +K++ VEL
Sbjct: 981 DALPGLQIYTLVMNSTDIQHKILTKLQDVIKTYFGYPLEVELQITLAAIHPWLVTSSNCC 1040
Query: 401 FESFDVDS-AKLARLKLDPEAGIKTRFLL-ILLELSTNEKVLVFSQYIEPLTLIMEQLRH 458
+ F+ +++ +LK D + G K F+L ++ + EK+L+F I P+ + E +
Sbjct: 1041 TKFFNPQELSEIGKLKHDAKKGSKVMFVLNLIFRVVKREKILIFCHNIAPIRMFTELFEN 1100
Query: 459 RFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVL 518
F W+ G+E+L + G ++ +R I+ +P + +R++LAS AC EGI+L ASRV++
Sbjct: 1101 IFRWQRGREILTLTGDLELFERGRVIDKFEEPGNPSRVLLASITACAEGISLTAASRVIM 1160
Query: 519 LDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
LD WNP +QAI+RA+R GQ++VV+VY L++ TLE DK RR K W S M+F S +
Sbjct: 1161 LDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSCMIF-SEE 1219
Query: 579 GGGNDQTTASEPLEDKILEEM 599
+ +E +ED IL E+
Sbjct: 1220 FVADPSLWQAEKIEDDILREI 1240
>TAIR|locus:2096499 [details] [associations]
symbol:CHR38 "chromatin remodeling 38" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0031047 "gene silencing
by RNA" evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0003677 GO:GO:0004386
GO:GO:0031047 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AL138640 KO:K10875 UniGene:At.66552
IPI:IPI00544222 PIR:T47325 RefSeq:NP_189853.1 UniGene:At.43953
ProteinModelPortal:Q9M297 SMR:Q9M297 STRING:Q9M297 PaxDb:Q9M297
PRIDE:Q9M297 EnsemblPlants:AT3G42670.1 GeneID:823287
KEGG:ath:AT3G42670 TAIR:At3g42670 HOGENOM:HOG000084373
InParanoid:Q9M297 OMA:IQKWHAQ PhylomeDB:Q9M297
ProtClustDB:CLSN2684240 Genevestigator:Q9M297 Uniprot:Q9M297
Length = 1256
Score = 428 (155.7 bits), Expect = 1.7e-71, Sum P(2) = 1.7e-71
Identities = 109/327 (33%), Positives = 169/327 (51%)
Query: 4 IKDIDPPFATSPSRRAEWREYNNVDPSFLDDLNS---RDSGFDSQT------GCD-PFTH 53
IK + PFA E ++ N DD+N+ G +S T D P
Sbjct: 605 IKHVSAPFARHKKWTTETKQINE------DDINTTIVNQDGVESHTFTIPVASSDMPSAE 658
Query: 54 AQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPG 113
VW L+P+ +++K+ HQ++ FEF+WKN+AG + + + + +S G GC++SH PG
Sbjct: 659 ESDNVWSLIPQ-LKRKLHLHQKKAFEFLWKNLAGSV-VPAMMDPSSDKIG-GCVVSHTPG 715
Query: 114 TGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKE 173
GKT L + FL +Y+K+ P RP+++AP++ L TW +EF KW I +P + L+
Sbjct: 716 AGKTFLIIAFLASYLKIFPGKRPLVLAPKTTLYTWYKEFIKWEIPVPVHLLHGRRTYCMS 775
Query: 174 NNGAVALMDNRKRGRGKVGLIRYV-KLYSWKMGTGILGLSYRLFEKLVSGDE-------L 225
+ K + + ++ + K+ W +L + Y F L+ D +
Sbjct: 776 KEKTIQFEGIPKPSQDVMHVLDCLDKIQKWHAQPSVLVMGYTSFLTLMREDSKFAHRKYM 835
Query: 226 SGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
+ +L + PGL V DEGH PR+ + + KAL ++ T RI+LSGT FQNNF E NTL L
Sbjct: 836 AKVLRESPGLLVLDEGHNPRSTKSRLRKALMKVDTDLRILLSGTLFQNNFCEYFNTLCLA 895
Query: 286 RQEF-GEVLRTVRK---SGREISKAKH 308
R +F EVL + K + + KA H
Sbjct: 896 RPKFVHEVLVELDKKFQTNQAEQKAPH 922
Score = 367 (134.2 bits), Expect = 1.7e-71, Sum P(2) = 1.7e-71
Identities = 75/193 (38%), Positives = 120/193 (62%)
Query: 410 KLARLKLDPEAGIKTRFLL-ILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEV 468
++ +LK D + G K F+L ++ + EK+L+F I P+ L +E + F W+ G+E+
Sbjct: 1045 EIEKLKHDAKKGSKVMFVLNLVFRVVKREKILIFCHNIAPIRLFLELFENVFRWKRGREL 1104
Query: 469 LYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVE 528
L + G ++ +R I+ +P Q+R++LAS AC EGI+L ASRV++LD WNP
Sbjct: 1105 LTLTGDLELFERGRVIDKFEEPGGQSRVLLASITACAEGISLTAASRVIMLDSEWNPSKT 1164
Query: 529 RQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTAS 588
+QAI+RA+R GQ++VV+VY L++ TLE DK RR K W S+M+F S + + +
Sbjct: 1165 KQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVSSMIF-SEEFVEDPSQWQA 1223
Query: 589 EPLEDKILEEMAQ 601
E +ED +L E+ +
Sbjct: 1224 EKIEDDVLREIVE 1236
Score = 37 (18.1 bits), Expect = 3.3e-29, Sum P(2) = 3.3e-29
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 263 RIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301
+++L P ++ Q+ + + +E E+ R+ R+SGR
Sbjct: 243 KVVLFN-PAEDTCQD-SDVKEEIEEEVMELRRSKRRSGR 279
>TAIR|locus:2050039 [details] [associations]
symbol:CHR34 "chromatin remodeling 34" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 EMBL:AC006841 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K10875 HOGENOM:HOG000029425 IPI:IPI00546951 PIR:D84601
RefSeq:NP_179740.1 UniGene:At.39568 ProteinModelPortal:Q9SJT3
SMR:Q9SJT3 PRIDE:Q9SJT3 EnsemblPlants:AT2G21450.1 GeneID:816684
KEGG:ath:AT2G21450 TAIR:At2g21450 InParanoid:Q9SJT3 OMA:FVFQYIS
PhylomeDB:Q9SJT3 ProtClustDB:CLSN2913149 ArrayExpress:Q9SJT3
Genevestigator:Q9SJT3 Uniprot:Q9SJT3
Length = 816
Score = 320 (117.7 bits), Expect = 1.4e-53, Sum P(2) = 1.4e-53
Identities = 80/222 (36%), Positives = 125/222 (56%)
Query: 94 LKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFK 153
L N+ + GCI++HAPG+GKT L + FLQ++M + P+ RP+++ P+ ++ +W+ EF
Sbjct: 276 LCNNLAADEPGGCILAHAPGSGKTFLLISFLQSFMAMDPQARPLVVLPKGIIESWKREFT 335
Query: 154 KWGID-IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLS 212
W ++ IP + S K ++RK+ + KV L W IL L
Sbjct: 336 LWEVEKIPLLDF----YSVKA--------ESRKQ-QLKV-------LGQWIKERSILFLG 375
Query: 213 YRLFEKLVSGDELSG-------ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRII 265
Y+ F +++ D ILL+ P L + DEGHT RN +T M +L+R+KTRR+++
Sbjct: 376 YQQFTRIICDDNFEAASEDCKLILLEKPTLLILDEGHTSRNKETYMLSSLARVKTRRKVV 435
Query: 266 LSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAK 307
L+GT FQNN +E+ N L LVR +F + T R +SKA+
Sbjct: 436 LTGTLFQNNVEEVFNILDLVRPKFLKRPGTREIVSRIMSKAE 477
Score = 314 (115.6 bits), Expect = 1.4e-53, Sum P(2) = 1.4e-53
Identities = 84/246 (34%), Positives = 130/246 (52%)
Query: 350 LPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN-----YCXXXXXXXXX---XXXQQFF 401
LPGL V+L Q+ K + ++ F +++ Y ++ F
Sbjct: 538 LPGLSEFTVMLNLSSIQRDEVKGLRKMELFKQISLGAALYIHPKLKSFLEENPSNGEKGF 597
Query: 402 ESFDVDSAKLARL--KLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQLR 457
+ KL ++ K++ G+K +F L LL L ST EK+LVFSQYI P+ + +
Sbjct: 598 SDNNTTVMKLDKMLKKINVRDGVKMKFFLNLLALCESTGEKLLVFSQYIVPIKTLERLMS 657
Query: 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
WR G+E+ + G ++R+ S+ N+ S +A++ S KAC EGI+LVGASRV+
Sbjct: 658 SMKGWRLGKEMFTITGDSSNEQREWSMERFNN-SLEAKVFFGSIKACGEGISLVGASRVL 716
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSS 577
+LDV NP V +QA++RAYR GQKR V+ Y L+ +++ E + RK S M F +
Sbjct: 717 ILDVHLNPSVTQQAVARAYRPGQKRKVYAYKLVAADSPEEENYETCTRKEMMSKMWFEWN 776
Query: 578 DGGGND 583
G G +
Sbjct: 777 VGSGRE 782
Score = 193 (73.0 bits), Expect = 3.7e-40, Sum P(2) = 3.7e-40
Identities = 54/153 (35%), Positives = 81/153 (52%)
Query: 16 SRRAEWREYNNVDPSFLDDLNSRDSGFDSQTGCDPFTHAQGTVWELVPRDVRKKMFPHQR 75
SRR RE N + S D + S + G F H W D ++M PHQ
Sbjct: 223 SRRTYMREKENGETS--RDFSGIQSSHTNILGEKMFIHP----WH----D--QEMRPHQT 270
Query: 76 EGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR 135
EGF F+ N+A DE GG CI++HAPG+GKT L + FLQ++M + P+ R
Sbjct: 271 EGFRFLCNNLAA----DE------PGG---CILAHAPGSGKTFLLISFLQSFMAMDPQAR 317
Query: 136 PVIIAPRSMLLTWEEEFKKWGID-IP---FYNL 164
P+++ P+ ++ +W+ EF W ++ IP FY++
Sbjct: 318 PLVVLPKGIIESWKREFTLWEVEKIPLLDFYSV 350
Score = 38 (18.4 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 200 YSWKMGTGILGLSYRLFEKLVSGD 223
+ W +G+G +R + SGD
Sbjct: 773 FEWNVGSGREDFGFRAIDADHSGD 796
>TAIR|locus:2042619 [details] [associations]
symbol:DRD1 "DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0004386 "helicase activity" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006306 "DNA methylation" evidence=RCA;IMP]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IGI] [GO:0050832 "defense response to fungus"
evidence=IMP] [GO:0006260 "DNA replication" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0007267
"cell-cell signaling" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0009616 "virus induced gene
silencing" evidence=RCA] [GO:0010050 "vegetative phase change"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0016571 "histone methylation"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0050832 GO:GO:0003677
GO:GO:0004386 GO:GO:0030422 GO:GO:0006306 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AC007047
KO:K10875 IPI:IPI00539494 PIR:G84539 RefSeq:NP_179232.1
UniGene:At.40283 ProteinModelPortal:Q9SIW2 SMR:Q9SIW2 STRING:Q9SIW2
PaxDb:Q9SIW2 PRIDE:Q9SIW2 EnsemblPlants:AT2G16390.1 GeneID:816136
KEGG:ath:AT2G16390 TAIR:At2g16390 HOGENOM:HOG000029425
InParanoid:Q9SIW2 OMA:ISKMWFE PhylomeDB:Q9SIW2
ProtClustDB:CLSN2683737 ArrayExpress:Q9SIW2 Genevestigator:Q9SIW2
Uniprot:Q9SIW2
Length = 888
Score = 316 (116.3 bits), Expect = 1.5e-52, Sum P(2) = 1.5e-52
Identities = 69/191 (36%), Positives = 117/191 (61%)
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYN 163
GCI++HAPG+GKT + + F+Q+++ +P+ +P+++ P+ +L TW++EF +W + DIP +
Sbjct: 372 GCIMAHAPGSGKTFMIISFMQSFLAKYPQAKPLVVLPKGILPTWKKEFVRWQVEDIPLLD 431
Query: 164 LNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV--- 220
S K N A L +++ W IL L Y+ F +V
Sbjct: 432 F----YSAKAENRAQQL-----------SILK-----QWMEKKSILFLGYQQFSTIVCDD 471
Query: 221 SGDELS--GILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
+ D LS ILL +P + + DEGHTPRN+DT + ++L++++T R+++LSGT +QN+ +E+
Sbjct: 472 TTDSLSCQEILLKVPSILILDEGHTPRNEDTNLLQSLAQVQTPRKVVLSGTLYQNHVKEV 531
Query: 279 ENTLSLVRQEF 289
N L+LVR +F
Sbjct: 532 FNILNLVRPKF 542
Score = 310 (114.2 bits), Expect = 1.5e-52, Sum P(2) = 1.5e-52
Identities = 83/224 (37%), Positives = 117/224 (52%)
Query: 338 VNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCXXXXXXXXXXXX 397
++ +KG L E LPGL V+L Q K + K +++
Sbjct: 610 LHYYKGDFLDE-LPGLADFTVVLNLSPKQLNEVKKLRREKRKFKVS--AVGSAIYLHPKL 666
Query: 398 QQFFE-SFDVDSAKLARL--KLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLI 452
+ F + S DV + + KLD G+K +F L L+ L S EK+LVFSQY+ PL +
Sbjct: 667 KVFSDKSDDVSDTTMDEMVEKLDLNEGVKAKFFLNLINLCDSAGEKLLVFSQYLIPLKFL 726
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
W+ G+EV + G ++R+ S+ N S A+I S KAC EGI+LVG
Sbjct: 727 ERLAALAKGWKLGKEVFVLTGNTSSEQREWSMETFNS-SPDAKIFFGSIKACGEGISLVG 785
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
ASR+++LDV NP V RQAI RA+R GQK++VH Y LI + E
Sbjct: 786 ASRILILDVPLNPSVTRQAIGRAFRPGQKKMVHAYRLIAGSSPE 829
Score = 182 (69.1 bits), Expect = 2.1e-38, Sum P(2) = 2.1e-38
Identities = 37/99 (37%), Positives = 64/99 (64%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM 128
+M PHQ EGF+F+ N+ D+ GG CI++HAPG+GKT + + F+Q+++
Sbjct: 349 EMKPHQIEGFQFLCSNLVA----DD------PGG---CIMAHAPGSGKTFMIISFMQSFL 395
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIP---FYN 163
+P+ +P+++ P+ +L TW++EF +W + DIP FY+
Sbjct: 396 AKYPQAKPLVVLPKGILPTWKKEFVRWQVEDIPLLDFYS 434
>UNIPROTKB|B4NXB8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7245 "Drosophila yakuba" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CM000157
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043150 GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872
EMBL:FJ219212 RefSeq:XP_002087763.1 STRING:B4NXB8 GeneID:6526655
KEGG:dya:Dyak_GE14966 FlyBase:FBgn0232556 Uniprot:B4NXB8
Length = 784
Score = 230 (86.0 bits), Expect = 2.6e-34, Sum P(3) = 2.6e-34
Identities = 54/166 (32%), Positives = 94/166 (56%)
Query: 416 LDPEAGIKTR---FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMD 472
L+PE K F+L + N+KV++ S Y + L L EQL + + G + +D
Sbjct: 493 LNPELSGKFMLLDFMLAAIRADGNDKVVLISNYTQTLDLF-EQLARKRKY--G--FVRLD 547
Query: 473 GKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAI 532
G +KKR ++ NDP S + + + S+KA G+NL+GA+R+ + D WNP + QA+
Sbjct: 548 GTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAM 607
Query: 533 SRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
+R +R GQK+ ++Y ++ S ++E L+RQ K S+ + +++
Sbjct: 608 ARVWRDGQKKPCYIYRMVASGSIEEKILQRQTHKKSLSSTIIDNNE 653
Score = 140 (54.3 bits), Expect = 2.6e-34, Sum P(3) = 2.6e-34
Identities = 35/105 (33%), Positives = 58/105 (55%)
Query: 187 GRGKVGLIRYVKLYSW---KMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHT 243
G K IR ++ +S ++GT +L +SY F + + L + G+ + DEGH
Sbjct: 247 GGTKENTIRALEQFSMTSSRLGTPVLLISYETFR--IYAEILCKYEV---GMVICDEGHR 301
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE 288
+N D ++AL +KT+RR++LSGTP QN+ E + ++ V E
Sbjct: 302 LKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPE 346
Score = 131 (51.2 bits), Expect = 2.6e-34, Sum P(3) = 2.6e-34
Identities = 28/89 (31%), Positives = 46/89 (51%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + + ++
Sbjct: 158 PHQREGVRFMYECVEG-----------KRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQG 206
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKW 155
P C+P ++++P S++ WE+EF KW
Sbjct: 207 PECKPTINKAIVVSPSSLVKNWEKEFTKW 235
Score = 43 (20.2 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 235 LFVFDEGHTPRNDDTCM 251
LF+FD P ND+ M
Sbjct: 591 LFMFDPDWNPANDEQAM 607
>ZFIN|ZDB-GENE-040426-968 [details] [associations]
symbol:rad54l "RAD54-like (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA;ISS] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-040426-968 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008094 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 CTD:8438
EMBL:BC046050 IPI:IPI00507004 RefSeq:NP_957438.1 UniGene:Dr.78565
PDB:1Z3I PDBsum:1Z3I ProteinModelPortal:Q7ZV09 SMR:Q7ZV09
STRING:Q7ZV09 GeneID:394119 KEGG:dre:394119 InParanoid:Q7ZV09
EvolutionaryTrace:Q7ZV09 NextBio:20815072 ArrayExpress:Q7ZV09
Uniprot:Q7ZV09
Length = 738
Score = 397 (144.8 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 146/537 (27%), Positives = 243/537 (45%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W + G ++NS GCI++ G GKT + +
Sbjct: 145 KVLRPHQREGVKFLWDCVTGR----RIENSY------GCIMADEMGLGKTLQCITLIWTL 194
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
+K P C+P ++++P S++ W E KW L G+ A+ D
Sbjct: 195 LKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKW-------------LGGRVQPVAI---D 238
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL-SGILLDLPGLFVFDEG 241
+ L+ ++ ++ T IL +SY F + + L G + GL + DEG
Sbjct: 239 GGSKDEIDSKLVNFISQQGMRIPTPILIISYETFR--LHAEVLHKGKV----GLVICDEG 292
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR-------QEFGEVLR 294
H +N D + AL+ + +RR+++SGTP QN+ E + + V QEF +
Sbjct: 293 HRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFE 352
Query: 295 TVRKSGREISKA---------KHASLISSIGRCANHR-DDXXXXXXXXXIAPFVNVHKGT 344
GR+ + K LIS + RC R D I V + T
Sbjct: 353 IPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNL-T 411
Query: 345 VLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN-YCXXXXXXXXX-XXXQQFFE 402
LQ+ L L + +P E + +V + S L C ++ F+
Sbjct: 412 PLQKELYKL--FLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFD 469
Query: 403 -SFDVDSAKLARLKLDPEAGIKTR---FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRH 458
+ D+ + ++P+ K ++L + +T++KV++ S Y + L L + R+
Sbjct: 470 GALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRN 529
Query: 459 RFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
R LY +DG +KKR + N+PSS I + S+KA G+NL+GA+R+
Sbjct: 530 R-------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRL 582
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E L+RQA K S+ V
Sbjct: 583 VMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCV 639
>UNIPROTKB|E1C963 [details] [associations]
symbol:RAD54L2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 GO:GO:0003712 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:AADN02056475
EMBL:AADN02056476 EMBL:AADN02056477 IPI:IPI00581654
Ensembl:ENSGALT00000005129 OMA:THMRKNI Uniprot:E1C963
Length = 1148
Score = 258 (95.9 bits), Expect = 2.7e-33, Sum P(3) = 2.7e-33
Identities = 71/198 (35%), Positives = 100/198 (50%)
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR------------FNWREGQEVLYMDG 473
F L+ + +K+LVFSQ + L++I E L R NW +DG
Sbjct: 739 FHLVEESVKLGDKILVFSQSLSTLSVIEEFLAKRPMPNPPGSDGGVHNWVRNISYYRLDG 798
Query: 474 KQDVKKRQSSINVLNDPSSQAR-IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAI 532
+R+ IN NDPS+ + + L ST+A C G+NL+GA+RVV+ D WNP + QA+
Sbjct: 799 STSASERERLINQFNDPSNASVWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQAV 858
Query: 533 SRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLE 592
R YR GQK+ H+Y L++ TLE RQ K S+ V + N E L
Sbjct: 859 CRVYRYGQKKPCHIYRLVSDYTLEKKIYDRQISKQGMSDRVVDDLNPVLNFTRREVENLL 918
Query: 593 DKILEE--MAQLYNNPSE 608
+ EE +AQL NPS+
Sbjct: 919 HFVEEESDLAQLSLNPSK 936
Score = 129 (50.5 bits), Expect = 2.7e-33, Sum P(3) = 2.7e-33
Identities = 42/149 (28%), Positives = 66/149 (44%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ G F++ N+ L+ K S+ G GCI++H+ G GKT + FL + H
Sbjct: 282 PHQIGGIRFLYDNLVES--LERFKTSS----GFGCILAHSMGLGKTIQVISFLDVLFR-H 334
Query: 132 PRCRPVI-IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGK 190
+ V+ I P + L W EF W + P NL P+ + KE + + K
Sbjct: 335 TEAKTVLAIVPVNTLQNWLAEFNMW-LPAP-ENL-PPDYNSKEVQPRTFKV-HILNDEHK 390
Query: 191 VGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
R + W + G+L + Y ++ L
Sbjct: 391 TTAARAKVVNDWVVEGGVLLMGYEMYRLL 419
Score = 109 (43.4 bits), Expect = 2.7e-33, Sum P(3) = 2.7e-33
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 233 PGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF 289
P + + DEGH +N +AL I++RRR++L+G P QNN E + VR +F
Sbjct: 466 PDVVICDEGHRIKNCHASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDF 522
>UNIPROTKB|F1NBD4 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0042493
GO:GO:0003677 GO:GO:0010212 GO:GO:0000724 GO:GO:0004386
GO:GO:0051276 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 EMBL:AADN02012644 IPI:IPI00818904
Ensembl:ENSGALT00000016863 ArrayExpress:F1NBD4 Uniprot:F1NBD4
Length = 733
Score = 384 (140.2 bits), Expect = 8.9e-33, P = 8.9e-33
Identities = 142/532 (26%), Positives = 235/532 (44%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F+W + S G +GCI++ G GKT + + ++
Sbjct: 144 PHQREGVKFLWDCVT----------SRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQS 193
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P ++++P S++ W E +KW L G+ A+ +
Sbjct: 194 PDCKPEIEKAMVVSPSSLVRNWYNEVEKW-------------LGGRIQPLAIDGGSKEEI 240
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRN 246
R VG + L ++ + IL +SY F + + GL + DEGH +N
Sbjct: 241 DRKLVGFMNQRGL---RVPSPILIISYETFRLHAEALQKGSV-----GLVICDEGHRLKN 292
Query: 247 DDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR-------QEFGEVLRTVRKS 299
+ ++AL+ + T RR+++SGTP QN+ E + + V QEF
Sbjct: 293 SENQTYQALNSLNTPRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKRHFELPILK 352
Query: 300 GREI--SKAKHAS-------LISSIGRCANHR-DDXXXXXXXXXIAPFVNVHKGTVLQES 349
GR+ S+A+ LIS + RC R D I V T LQ
Sbjct: 353 GRDADASEAERQKGEERLKELISIVNRCLIRRTSDILSKYLPVKIEQVVCCRL-TPLQAE 411
Query: 350 LPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN-YCXXXXXXXXXXXXQQ--FFESFDV 406
L ++ + +P E K V + S L C ++ F + D+
Sbjct: 412 L--YKNFLKQAKPVEELKEGKINVSSLSSITSLKKLCNHPALIYDKCVEEEEGFMGALDL 469
Query: 407 DSAKLARLKLDPEAGIKTR---FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWR 463
A + ++P+ K ++L + + ++N+KV++ S Y + L L + R+R
Sbjct: 470 FPAGYSTKSVEPQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFEKLCRNR---- 525
Query: 464 EGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDV 521
LY +DG +KKR + N PSS I + S+KA G+NL+GA+R+V+ D
Sbjct: 526 ---RYLYVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDP 582
Query: 522 VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ K S+ V
Sbjct: 583 DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCV 634
>UNIPROTKB|F1NX31 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0042493
GO:GO:0003677 GO:GO:0010212 GO:GO:0000724 GO:GO:0004386
GO:GO:0051276 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 IPI:IPI00588266 OMA:TYQALMG
EMBL:AADN02012644 Ensembl:ENSGALT00000038354 ArrayExpress:F1NX31
Uniprot:F1NX31
Length = 742
Score = 384 (140.2 bits), Expect = 9.2e-33, P = 9.2e-33
Identities = 142/532 (26%), Positives = 235/532 (44%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F+W + S G +GCI++ G GKT + + ++
Sbjct: 153 PHQREGVKFLWDCVT----------SRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQS 202
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P ++++P S++ W E +KW L G+ A+ +
Sbjct: 203 PDCKPEIEKAMVVSPSSLVRNWYNEVEKW-------------LGGRIQPLAIDGGSKEEI 249
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRN 246
R VG + L ++ + IL +SY F + + GL + DEGH +N
Sbjct: 250 DRKLVGFMNQRGL---RVPSPILIISYETFRLHAEALQKGSV-----GLVICDEGHRLKN 301
Query: 247 DDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR-------QEFGEVLRTVRKS 299
+ ++AL+ + T RR+++SGTP QN+ E + + V QEF
Sbjct: 302 SENQTYQALNSLNTPRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKRHFELPILK 361
Query: 300 GREI--SKAKHAS-------LISSIGRCANHR-DDXXXXXXXXXIAPFVNVHKGTVLQES 349
GR+ S+A+ LIS + RC R D I V T LQ
Sbjct: 362 GRDADASEAERQKGEERLKELISIVNRCLIRRTSDILSKYLPVKIEQVVCCRL-TPLQAE 420
Query: 350 LPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN-YCXXXXXXXXXXXXQQ--FFESFDV 406
L ++ + +P E K V + S L C ++ F + D+
Sbjct: 421 L--YKNFLKQAKPVEELKEGKINVSSLSSITSLKKLCNHPALIYDKCVEEEEGFMGALDL 478
Query: 407 DSAKLARLKLDPEAGIKTR---FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWR 463
A + ++P+ K ++L + + ++N+KV++ S Y + L L + R+R
Sbjct: 479 FPAGYSTKSVEPQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFEKLCRNR---- 534
Query: 464 EGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDV 521
LY +DG +KKR + N PSS I + S+KA G+NL+GA+R+V+ D
Sbjct: 535 ---RYLYVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDP 591
Query: 522 VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ K S+ V
Sbjct: 592 DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCV 643
>ZFIN|ZDB-GENE-030131-3097 [details] [associations]
symbol:rad54l2 "RAD54-like 2 (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-3097 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
CTD:23132 KO:K10876 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:BX465868
IPI:IPI00481713 RefSeq:XP_687332.3 UniGene:Dr.141427
UniGene:Dr.159400 UniGene:Dr.1755 Ensembl:ENSDART00000091716
Ensembl:ENSDART00000147975 GeneID:558947 KEGG:dre:558947
NextBio:20882710 Uniprot:F1R3L6
Length = 1437
Score = 267 (99.0 bits), Expect = 1.1e-32, Sum P(3) = 1.1e-32
Identities = 77/218 (35%), Positives = 109/218 (50%)
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR----------FNWREG 465
L+ A + F LI ++ +K+LVFSQ + LT+I + L R NW
Sbjct: 717 LENSAKMVLLFYLIDETVARGDKILVFSQSLSTLTVIEDFLSRRPMPIQTETGTHNWVRN 776
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSS-QARIMLASTKACCEGINLVGASRVVLLDVVWN 524
+DG +R+ IN NDP++ QA + L ST+A C G+NL+GA+RVV+ D WN
Sbjct: 777 INYYRLDGSTSASERERLINQFNDPANTQAWVFLLSTRAGCLGVNLIGANRVVVFDASWN 836
Query: 525 PFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQ 584
P + QA+ R YR GQ++ H+Y L+ TLE RQ K S+ V + N
Sbjct: 837 PCHDAQAVCRVYRYGQRKPCHIYRLVCDFTLEKKIYDRQVSKQGMSDRVVDDLNPVLNFT 896
Query: 585 TTASEPLEDKILEEM--AQLY-NNPSETLIN-AIIPQP 618
E L + EE A+L NN ET+I A + P
Sbjct: 897 RKEVESLLHFVEEEPDPAELQPNNEMETVIQQACVMYP 934
Score = 117 (46.2 bits), Expect = 1.1e-32, Sum P(3) = 1.1e-32
Identities = 40/163 (24%), Positives = 73/163 (44%)
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
L P+ + + + PHQ G F++ N+ L+ K S+ G GCI++H+ G GKT
Sbjct: 273 LAPQ-LARAVKPHQIGGIRFLYDNLVES--LERYKTSS----GFGCILAHSMGLGKTLQV 325
Query: 121 LVFLQAYMKLHPRCRPVI-IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKE---NNG 176
+ F+ ++ H + V+ I P + L W EF W +P P+ ++
Sbjct: 326 ISFIDVLLR-HTGAKTVLAIVPVNTLQNWLAEFNLW---LPAAEALPPDTDPQQVLPRTF 381
Query: 177 AVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
V ++++ K + R + W G+L + Y ++ L
Sbjct: 382 KVHILNDEH----KTTVARAKVVEDWTGDGGVLLMGYEMYRLL 420
Score = 109 (43.4 bits), Expect = 1.1e-32, Sum P(3) = 1.1e-32
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 233 PGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF 289
P + + DEGH +N +AL I++RRR++L+G P QNN E + VR +F
Sbjct: 467 PDVVICDEGHRIKNCHASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDF 523
Score = 41 (19.5 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 69 KMFPHQREGFEFIWK-NIAG--GIDLDELKNSTST 100
K++ H +E + K N+A +DLD+L +S+ T
Sbjct: 630 KIWNHPDVLYEALQKENLANEQDLDLDDLNSSSGT 664
>UNIPROTKB|O12944 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000733 "DNA
strand renaturation" evidence=ISS] [GO:0036310 "annealing helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0036310
HOGENOM:HOG000204521 HOVERGEN:HBG058654 EMBL:U92461 IPI:IPI00588266
UniGene:Gga.3308 ProteinModelPortal:O12944 SMR:O12944 STRING:O12944
InParanoid:O12944 OrthoDB:EOG4D7Z53 Uniprot:O12944
Length = 733
Score = 382 (139.5 bits), Expect = 1.5e-32, P = 1.5e-32
Identities = 142/532 (26%), Positives = 235/532 (44%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F+W + S G +GCI++ G GKT + + ++
Sbjct: 144 PHQREGVKFLWDCVT----------SRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQS 193
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P ++++P S++ W E +KW L G+ A+ +
Sbjct: 194 PDCKPEIEKAMVVSPSSLVRNWYNEVEKW-------------LGGRIQPLAIDGGSKEEI 240
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRN 246
R VG + L ++ + IL +SY F + + GL + DEGH +N
Sbjct: 241 DRKLVGSMNQRGL---RVPSPILIISYETFRLHAEALQKGSV-----GLVICDEGHRLKN 292
Query: 247 DDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR-------QEFGEVLRTVRKS 299
+ ++AL+ + T RR+++SGTP QN+ E + + V QEF
Sbjct: 293 SENQTYQALNSLNTPRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKRHFELPILK 352
Query: 300 GREI--SKAKHAS-------LISSIGRCANHR-DDXXXXXXXXXIAPFVNVHKGTVLQES 349
GR+ S+A+ LIS + RC R D I V T LQ
Sbjct: 353 GRDADASEAERQKGEERLKELISIVNRCLIRRTSDILSKYLPVKIEQVVCCRL-TPLQAE 411
Query: 350 LPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN-YCXXXXXXXXXXXXQQ--FFESFDV 406
L ++ + +P E K V + S L C ++ F + D+
Sbjct: 412 L--YKNFLKQAKPVEELKEGKINVSSLSSITSLKKLCNHPALIYDKCVEEEEGFMGALDL 469
Query: 407 DSAKLARLKLDPEAGIKTR---FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWR 463
A + ++P+ K ++L + + ++N+KV++ S Y + L L + R+R
Sbjct: 470 FPAGYSTKSVEPQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFEKLCRNR---- 525
Query: 464 EGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDV 521
LY +DG +KKR + N PSS I + S+KA G+NL+GA+R+V+ D
Sbjct: 526 ---RYLYVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDP 582
Query: 522 VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ K S+ V
Sbjct: 583 DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCV 634
>DICTYBASE|DDB_G0293120 [details] [associations]
symbol:DDB_G0293120 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0293120
GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.150.50 InterPro:IPR013761
SUPFAM:SSF47769 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000199 RefSeq:XP_629344.1
ProteinModelPortal:Q54C75 EnsemblProtists:DDB0233083 GeneID:8629068
KEGG:ddi:DDB_G0293120 InParanoid:Q54C75 OMA:KGCILAH Uniprot:Q54C75
Length = 2205
Score = 247 (92.0 bits), Expect = 4.5e-32, Sum P(2) = 4.5e-32
Identities = 49/121 (40%), Positives = 73/121 (60%)
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
NE+V+ FS I L + ++ + W+ G++ +DG K RQ I+ ND ++ +
Sbjct: 1907 NERVVTFSFSISTLNQLEYFIQKKLGWKAGRDYFRLDGSTPTKTRQRLIDQFNDMANDIK 1966
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
+ L STKA G NL G +RV+L+D+ WNP +RQA+ R YR+GQK VHVY L+ + T
Sbjct: 1967 LFLISTKAGSLGTNLTGGTRVILMDLSWNPVHDRQAVYRCYRMGQKNQVHVYTLVMAGTG 2026
Query: 556 E 556
E
Sbjct: 2027 E 2027
Score = 199 (75.1 bits), Expect = 4.5e-32, Sum P(2) = 4.5e-32
Identities = 56/189 (29%), Positives = 91/189 (48%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFY 162
G GCI++H+ G GK+ + FL + + H + ++I P + L WE+EFKKW
Sbjct: 1532 GKGCILAHSMGLGKSLQVIAFLHTHNRYHKGTKYLLIVPANTLYNWEKEFKKW------- 1584
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222
L K E K N V ++ R R+ +W G G+L +++ F ++
Sbjct: 1585 -LPKSE---KSTNIRVFAPRHKDLVR------RFPTFDNWFSGGGVLAMTFESFSSTINR 1634
Query: 223 ---DELSGI--LLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQE 277
+ I +L+ L V DEGH ++ T + A + IKT R+++L+G P QNN E
Sbjct: 1635 HIKERHPSIAKILETDFLIV-DEGHRLKSTKTKISDAANLIKTHRKVLLTGYPLQNNLME 1693
Query: 278 LENTLSLVR 286
+ +R
Sbjct: 1694 YYTMIDYIR 1702
Score = 142 (55.0 bits), Expect = 4.1e-26, Sum P(2) = 4.1e-26
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ G +F+W N+ K G GCI++H+ G GK+ + FL + + H
Sbjct: 1515 PHQHSGVQFLWDNMV-------FK-------GKGCILAHSMGLGKSLQVIAFLHTHNRYH 1560
Query: 132 PRCRPVIIAPRSMLLTWEEEFKKW 155
+ ++I P + L WE+EFKKW
Sbjct: 1561 KGTKYLLIVPANTLYNWEKEFKKW 1584
>WB|WBGene00013792 [details] [associations]
symbol:Y116A8C.13 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0033554 "cellular response to stress" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0033554 GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10877
GeneTree:ENSGT00700000105778 EMBL:AL117204 GeneID:190999
KEGG:cel:CELE_Y116A8C.13 CTD:190999 PIR:T31515
RefSeq:NP_001255913.1 ProteinModelPortal:Q9U2S8 SMR:Q9U2S8
PaxDb:Q9U2S8 EnsemblMetazoa:Y116A8C.13a UCSC:Y116A8C.13
WormBase:Y116A8C.13a HOGENOM:HOG000015986 InParanoid:Q9U2S8
OMA:KICNHPS NextBio:947616 ArrayExpress:Q9U2S8 Uniprot:Q9U2S8
Length = 833
Score = 252 (93.8 bits), Expect = 5.1e-32, Sum P(3) = 5.1e-32
Identities = 63/157 (40%), Positives = 88/157 (56%)
Query: 437 EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI 496
E ++ S YIE L +I +QL N++ VL +DGK V RQ + ND + I
Sbjct: 534 ECTVIVSNYIETLDMI-QQLCEYLNFK----VLRLDGKTQVPDRQKLVRTFNDHRDPSNI 588
Query: 497 MLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
L STKA G+NL+GASR+VL D WNP ++QA++R +R GQ R H+Y LIT+ T+E
Sbjct: 589 FLLSTKAGGVGLNLIGASRLVLFDSDWNPANDQQAMARIWRDGQVRPCHIYRLITTGTIE 648
Query: 557 WDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLED 593
L+RQ +K V + + G T E L+D
Sbjct: 649 EKMLQRQIKKTGLG-CVIDAIEVGDTIATFTDEDLKD 684
Score = 121 (47.7 bits), Expect = 5.1e-32, Sum P(3) = 5.1e-32
Identities = 33/86 (38%), Positives = 50/86 (58%)
Query: 209 LGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSG 268
L +SY L ++ V ++L I D+ V DEGH +N D + K L ++ RR+IL+G
Sbjct: 318 LVISYDLAQRHV--EKLKIIRFDV---MVCDEGHKLKNLDGKLRKTLLSLEIPRRLILTG 372
Query: 269 TPFQNNFQELENTLSLVRQE-FGEVL 293
TP QN+F+E + L VR FG ++
Sbjct: 373 TPMQNDFEEFYSLLDFVRPSVFGSIV 398
Score = 105 (42.0 bits), Expect = 5.1e-32, Sum P(3) = 5.1e-32
Identities = 28/89 (31%), Positives = 42/89 (47%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ+ G +FI+ + G S GGG G I++ G GK+ T+ A +K
Sbjct: 208 PHQKSGIQFIFDRLRRG--------SGKNGGGGGAILADDMGLGKSLQTMAATWALLKGS 259
Query: 132 PRCRPV-----IIAPRSMLLTWEEEFKKW 155
+ + II P S++ W+ EF KW
Sbjct: 260 KTAQQLANSCLIIVPSSLVNNWKAEFDKW 288
Score = 41 (19.5 bits), Expect = 9.6e-24, Sum P(3) = 9.6e-24
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 233 PGLFVFDEGHTPRND--DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
P L FD H PR ++ AL + R++ T +N+ E TL +++Q
Sbjct: 498 PLLLAFDGAHMPRGGVKESGKLTALVDMIKCFRLLQECTVIVSNYIE---TLDMIQQ 551
>FB|FBgn0039338 [details] [associations]
symbol:XNP "XNP" species:7227 "Drosophila melanogaster"
[GO:0003678 "DNA helicase activity" evidence=NAS] [GO:0005634
"nucleus" evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0007411 "axon guidance" evidence=IMP] [GO:0008347
"glial cell migration" evidence=IMP] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0006917 "induction of apoptosis"
evidence=IMP] [GO:0046328 "regulation of JNK cascade" evidence=IGI]
[GO:0005700 "polytene chromosome" evidence=IDA] [GO:0000775
"chromosome, centromeric region" evidence=IDA] [GO:0051276
"chromosome organization" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0005722 "beta-heterochromatin"
evidence=IDA] [GO:0070868 "heterochromatin organization involved in
chromatin silencing" evidence=IMP] [GO:0006336 "DNA
replication-independent nucleosome assembly" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0005634 GO:GO:0007411 GO:GO:0006917 GO:GO:0003677
GO:GO:0006281 GO:GO:0016887 GO:GO:0004386 GO:GO:0070868
GO:GO:0046328 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008347 KO:K10779 EMBL:AF217802 EMBL:AY058592
RefSeq:NP_651398.1 RefSeq:NP_733107.1 UniGene:Dm.1935
ProteinModelPortal:Q9GQN5 SMR:Q9GQN5 STRING:Q9GQN5 PaxDb:Q9GQN5
EnsemblMetazoa:FBtr0084837 EnsemblMetazoa:FBtr0084838 GeneID:43080
KEGG:dme:Dmel_CG4548 UCSC:CG4548-RA CTD:43080 FlyBase:FBgn0039338
GeneTree:ENSGT00550000074619 InParanoid:Q9GQN5 OMA:KQEYVIN
OrthoDB:EOG4ZW3S5 PhylomeDB:Q9GQN5 GenomeRNAi:43080 NextBio:832107
Bgee:Q9GQN5 GermOnline:CG4548 GO:GO:0005722 Uniprot:Q9GQN5
Length = 1311
Score = 235 (87.8 bits), Expect = 5.1e-31, Sum P(3) = 5.1e-31
Identities = 89/317 (28%), Positives = 139/317 (43%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
V + + KK+ PHQ G +F+W + LK S G +GCI++H G GKT L +
Sbjct: 447 VDKGLLKKLKPHQVAGVKFMWDAC-----FETLKESQEKPG-SGCILAHCMGLGKT-LQV 499
Query: 122 VFLQAYMKLHPRC----RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPE---LSGKEN 174
V L + ++ R R +II+P S + W EF W + F N N E +S ++
Sbjct: 500 VTLSHTLLVNTRRTGVDRVLIISPLSTVNNWAREFTSW---MKFANRNDIEVYDISRYKD 556
Query: 175 NGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDL-P 233
N G V ++ Y +Y GL + E+L+ L+D P
Sbjct: 557 KPTRIFKLNEWFNEGGVCILGY-DMYRILANEKAKGLRKKQREQLMQA------LVDPGP 609
Query: 234 GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEV 292
L V DEGH +N+ T + KA++R++T+RRI+L+GTP QNN +E + V+ G
Sbjct: 610 DLVVCDEGHLLKNEKTSISKAVTRMRTKRRIVLTGTPLQNNLREYYCMIQFVKPNLLGTY 669
Query: 293 LRTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPFVNVHKGTVLQESLPG 352
+ + I+ ++ R HR + + +VL LP
Sbjct: 670 KEYMNRFVNPITNGQYTDSTERDLRLMKHRSHILHKL----LEGCIQRRDYSVLAPYLPP 725
Query: 353 LRHSVVILQPDEFQKRL 369
VV E Q++L
Sbjct: 726 KHEYVVYTTLSELQQKL 742
Score = 196 (74.1 bits), Expect = 5.1e-31, Sum P(3) = 5.1e-31
Identities = 42/106 (39%), Positives = 63/106 (59%)
Query: 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPSS-QARIMLASTKACCEGINLVGASRVVLLD 520
W G++ +DG V++R++ N+ ++ +AR+ L ST+A GINLV A+RVV+ D
Sbjct: 957 WTSGKDYFRLDGSCSVEQREAMCKQFNNITNLRARLFLISTRAGGLGINLVAANRVVIFD 1016
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
V WNP + Q+I R YR GQ + ++Y LI T+E RQ K
Sbjct: 1017 VSWNPSHDTQSIFRVYRFGQIKPCYIYRLIAMGTMEQKVYERQVAK 1062
Score = 47 (21.6 bits), Expect = 5.1e-31, Sum P(3) = 5.1e-31
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 427 LLILLEL-----STNEKVLVFSQYIEPLTLI 452
LLILL L + +K+LVFSQ ++ L +I
Sbjct: 900 LLILLRLLQQCEAIGDKLLVFSQSLQSLDVI 930
Score = 38 (18.4 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 523 WNPFVERQAISRAY 536
W PFVE + ++ +
Sbjct: 882 WKPFVEERELNNVH 895
>UNIPROTKB|Q92698 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006310
"DNA recombination" evidence=TAS] [GO:0007126 "meiosis"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0007126
GO:GO:0042493 GO:GO:0003677 GO:GO:0006281 GO:GO:0010212
GO:GO:0006310 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CleanEx:HS_RAD54L GO:GO:0036310 EMBL:AL121602 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG
EMBL:X97795 EMBL:AY623117 EMBL:BC121059 EMBL:BC121060
IPI:IPI00294292 RefSeq:NP_001136020.1 RefSeq:NP_003570.2
UniGene:Hs.642042 ProteinModelPortal:Q92698 SMR:Q92698
DIP:DIP-48628N IntAct:Q92698 STRING:Q92698 PhosphoSite:Q92698
DMDM:51316508 PaxDb:Q92698 PRIDE:Q92698 Ensembl:ENST00000371975
Ensembl:ENST00000442598 GeneID:8438 KEGG:hsa:8438 UCSC:uc001cpl.2
CTD:8438 GeneCards:GC01P046713 HGNC:HGNC:9826 MIM:603615
neXtProt:NX_Q92698 PharmGKB:PA34181 InParanoid:Q92698
PhylomeDB:Q92698 ChiTaRS:RAD54L GenomeRNAi:8438 NextBio:31570
ArrayExpress:Q92698 Bgee:Q92698 Genevestigator:Q92698
GermOnline:ENSG00000085999 Uniprot:Q92698
Length = 747
Score = 368 (134.6 bits), Expect = 6.4e-31, P = 6.4e-31
Identities = 140/536 (26%), Positives = 236/536 (44%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W E S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVKFLW----------ECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 201 LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 244
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F +L G G + GL + DEGH
Sbjct: 245 GGSKDEIDQKLEGFMNQRGARVSSPILIISYETF-RLHVGVLQKGSV----GLVICDEGH 299
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ-------EFGE---- 291
+N + ++AL + T RR+++SGTP QN+ E + + V EF +
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFEL 359
Query: 292 -VLR----TVRKSGREISKAKHASLISSIGRCANHR-DDXXXXXXXXXIAPFVNVHKGTV 345
+L+ ++ R++ + + L S + RC R D I V T
Sbjct: 360 PILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRL-TP 418
Query: 346 LQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN-YCXXXXXXXXXXXXQQ--FFE 402
LQ L + + +P E +V + S L C ++ F
Sbjct: 419 LQTEL--YKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFVG 476
Query: 403 SFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQLRHR 459
+ D+ + L+P+ K L +L ++ +++KV++ S Y + L L + R R
Sbjct: 477 ALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRAR 536
Query: 460 FNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
LY +DG +KKR + N PSS + + S+KA G+NL+GA+R+V
Sbjct: 537 -------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLV 589
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 590 MFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
>UNIPROTKB|A1L4Z4 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0036310 "annealing
helicase activity" evidence=IEA] [GO:0010212 "response to ionizing
radiation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0042493 GO:GO:0003677
GO:GO:0010212 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:DAAA02009002 EMBL:BT029781 IPI:IPI00691258
RefSeq:NP_001124238.1 UniGene:Bt.106758 SMR:A1L4Z4 STRING:A1L4Z4
Ensembl:ENSBTAT00000026513 GeneID:100140639 KEGG:bta:100140639
InParanoid:A1L4Z4 NextBio:20790996 Uniprot:A1L4Z4
Length = 749
Score = 367 (134.2 bits), Expect = 8.3e-31, P = 8.3e-31
Identities = 142/536 (26%), Positives = 237/536 (44%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W E S G +GCI++ G GKT + +
Sbjct: 152 KVLRPHQREGVKFLW----------ECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 201
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 202 LRQSPDCKPEIDKAVVVSPSSLVRNWYNEVGKW-------------LGGRIQPLAI---D 245
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F +L G G + GL + DEGH
Sbjct: 246 GGSKDEIDQKLEGFMNQRGARVPSPILIISYETF-RLHVGVLQKGSV----GLVICDEGH 300
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR-------QEFGE---- 291
+N + ++AL + T RR+++SGTP QN+ E + + V QEF +
Sbjct: 301 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKHFEL 360
Query: 292 -VLR----TVRKSGREISKAKHASLISSIGRCANHR-DDXXXXXXXXXIAPFVNVHKGTV 345
+L+ + R + + + L S + RC R D I V T
Sbjct: 361 PILKGRDAAASEEDRRVGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRL-TP 419
Query: 346 LQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN-YCXXXXXXXXXXXXQQF-FE- 402
LQ L + + +P E + +V + S L C ++ FE
Sbjct: 420 LQIEL--YKRFLRQAKPAEELREGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFEG 477
Query: 403 SFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQLRHR 459
+ D+ L+P+ K L +L ++ +++KV++ S Y + L L + R R
Sbjct: 478 TLDIFPPGYNSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRAR 537
Query: 460 FNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
LY +DG +KKR + N+PSS + + S+KA G+NL+GA+R+V
Sbjct: 538 -------RYLYVRLDGTMSIKKRAKVVERFNNPSSPDFVFMLSSKAGGCGLNLIGANRLV 590
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 591 MFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 646
>MGI|MGI:1933196 [details] [associations]
symbol:Rad54l2 "RAD54 like 2 (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IDA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1933196 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 GO:GO:0003712 HSSP:Q97XQ5
CTD:23132 eggNOG:COG0553 HOGENOM:HOG000168429 HOVERGEN:HBG104283
KO:K10876 OrthoDB:EOG4X6C7G InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AJ132389 EMBL:BC133714 EMBL:AK143506
IPI:IPI00118760 RefSeq:NP_109655.2 UniGene:Mm.246689
ProteinModelPortal:Q99NG0 SMR:Q99NG0 STRING:Q99NG0
PhosphoSite:Q99NG0 PaxDb:Q99NG0 PRIDE:Q99NG0 GeneID:81000
KEGG:mmu:81000 UCSC:uc009rko.1 InParanoid:Q99NG0 NextBio:350334
CleanEx:MM_RAD54L2 Genevestigator:Q99NG0 Uniprot:Q99NG0
Length = 1466
Score = 241 (89.9 bits), Expect = 1.8e-30, Sum P(3) = 1.8e-30
Identities = 65/162 (40%), Positives = 85/162 (52%)
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR----FNWREGQ-------EVLY--MD 472
F LI + +K+LVFSQ + L LI E L R EGQ V Y +D
Sbjct: 726 FHLIEESVKLGDKILVFSQSLSTLALIEEFLGKRDMPCLPGAEGQGTQKWVRNVSYFRLD 785
Query: 473 GKQDVKKRQSSINVLNDPSSQAR-IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531
G +R+ IN NDPS+ + L ST+A C G+NL+GA+RVV+ D WNP + QA
Sbjct: 786 GSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQA 845
Query: 532 ISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+ R YR GQK+ H+Y L+ TLE RQ K S+ V
Sbjct: 846 VCRVYRYGQKKPCHIYRLVADYTLEKKIYDRQISKQGMSDRV 887
Score = 117 (46.2 bits), Expect = 1.8e-30, Sum P(3) = 1.8e-30
Identities = 29/95 (30%), Positives = 46/95 (48%)
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
L P+ + + + PHQ G F++ N+ L+ K S+ G GCI++H+ G GKT
Sbjct: 262 LAPQ-LARAVKPHQIGGIRFLYDNLVES--LERFKTSS----GFGCILAHSMGLGKTLQV 314
Query: 121 LVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155
+ F+ + P + I P + L W EF W
Sbjct: 315 ISFIDVLFRHTPAKTVLAIVPVNTLQNWLAEFNMW 349
Score = 116 (45.9 bits), Expect = 1.8e-30, Sum P(3) = 1.8e-30
Identities = 37/138 (26%), Positives = 59/138 (42%)
Query: 233 PGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GE 291
P + + DEGH +N +AL I++RRR++L+G P QNN E + VR +F G
Sbjct: 456 PDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGT 515
Query: 292 VLRTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPFVNVHKGTVLQESLP 351
R I + R +R + FV TVL+ LP
Sbjct: 516 RQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSL----LEGFVQRRGHTVLKIHLP 571
Query: 352 GLRHSVVILQPDEFQKRL 369
+V++++ + Q+ L
Sbjct: 572 AKEENVILVRLSQIQRDL 589
>UNIPROTKB|F1PB65 [details] [associations]
symbol:RAD54L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 CTD:23132 KO:K10876
OMA:HNLTTPF InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 EMBL:AAEX03012203 EMBL:AAEX03012204
RefSeq:XP_003639804.1 Ensembl:ENSCAFT00000016081 GeneID:476608
KEGG:cfa:476608 Uniprot:F1PB65
Length = 1467
Score = 237 (88.5 bits), Expect = 2.5e-30, Sum P(3) = 2.5e-30
Identities = 64/162 (39%), Positives = 85/162 (52%)
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR----FNWREGQ-------EVLY--MD 472
F LI + +K+LVFSQ + L LI E L R +GQ V Y +D
Sbjct: 727 FHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCLPGADGQGVQKWVRNVSYFRLD 786
Query: 473 GKQDVKKRQSSINVLNDPSSQAR-IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531
G +R+ IN NDPS+ + L ST+A C G+NL+GA+RVV+ D WNP + QA
Sbjct: 787 GSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQA 846
Query: 532 ISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+ R YR GQK+ H+Y L+ TLE RQ K S+ V
Sbjct: 847 VCRVYRYGQKKPCHIYRLVADFTLEKKIYDRQISKQGMSDRV 888
Score = 121 (47.7 bits), Expect = 2.5e-30, Sum P(3) = 2.5e-30
Identities = 45/163 (27%), Positives = 68/163 (41%)
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
L P+ + + + PHQ G F++ N+ L+ K S+ G GCI++H+ G GKT
Sbjct: 263 LAPQ-LARAVKPHQIGGIRFLYDNLVES--LERFKTSS----GFGCILAHSMGLGKTLQV 315
Query: 121 LVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIP--FYNLNKPELSGKENNGAV 178
+ F+ + P + I P + L W EF W + P NKPE
Sbjct: 316 ISFIDVLFRHTPAKTVLAIVPVNTLQNWLAEFNMW-LPAPEALPADNKPEEVQPRFFKVH 374
Query: 179 ALMDNRKR--GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
L D K R KV + W G+L + Y ++ L
Sbjct: 375 ILNDEHKTMAARAKV-------MADWVSEGGVLLMGYEMYRLL 410
Score = 115 (45.5 bits), Expect = 2.5e-30, Sum P(3) = 2.5e-30
Identities = 37/138 (26%), Positives = 59/138 (42%)
Query: 233 PGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GE 291
P + + DEGH +N +AL I++RRR++L+G P QNN E + VR +F G
Sbjct: 457 PDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGT 516
Query: 292 VLRTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPFVNVHKGTVLQESLP 351
R I + R +R + FV TVL+ LP
Sbjct: 517 RQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSL----LEGFVQRRGHTVLKIHLP 572
Query: 352 GLRHSVVILQPDEFQKRL 369
+V++++ + Q+ L
Sbjct: 573 AKEENVILVRLSKIQRDL 590
>UNIPROTKB|E1BEK4 [details] [associations]
symbol:Bt.109773 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003712 "transcription
cofactor activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 GO:GO:0003712 OMA:HNLTTPF InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
EMBL:DAAA02054392 EMBL:DAAA02054393 EMBL:DAAA02054394
IPI:IPI00841842 Ensembl:ENSBTAT00000045730 Uniprot:E1BEK4
Length = 1470
Score = 240 (89.5 bits), Expect = 4.9e-30, Sum P(3) = 4.9e-30
Identities = 65/162 (40%), Positives = 85/162 (52%)
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR----FNWREGQ-------EVLY--MD 472
F LI + +K+LVFSQ + L LI E L R EGQ V Y +D
Sbjct: 730 FHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCLPGAEGQGVQKWIRNVSYFRLD 789
Query: 473 GKQDVKKRQSSINVLNDPSSQAR-IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531
G +R+ IN NDPS+ + L ST+A C G+NL+GA+RVV+ D WNP + QA
Sbjct: 790 GSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQA 849
Query: 532 ISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+ R YR GQK+ H+Y L+ TLE RQ K S+ V
Sbjct: 850 VCRVYRYGQKKPCHIYRLVADFTLEKKIYDRQISKQGMSDRV 891
Score = 117 (46.2 bits), Expect = 4.9e-30, Sum P(3) = 4.9e-30
Identities = 29/95 (30%), Positives = 46/95 (48%)
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
L P+ + + + PHQ G F++ N+ L+ K S+ G GCI++H+ G GKT
Sbjct: 264 LAPQ-LARAVKPHQIGGIRFLYDNLVES--LERFKTSS----GFGCILAHSMGLGKTLQV 316
Query: 121 LVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155
+ F+ + P + I P + L W EF W
Sbjct: 317 ISFIDVLFRHTPAKTVLAIVPVNTLQNWLAEFNMW 351
Score = 113 (44.8 bits), Expect = 4.9e-30, Sum P(3) = 4.9e-30
Identities = 36/138 (26%), Positives = 60/138 (43%)
Query: 233 PGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GE 291
P + + DEGH +N +AL I++RRR++L+G P QNN E + VR +F G
Sbjct: 460 PDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGT 519
Query: 292 VLRTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPFVNVHKGTVLQESLP 351
R I + R +R + F++ TVL+ LP
Sbjct: 520 RQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSL----LELFLSRRGHTVLKIHLP 575
Query: 352 GLRHSVVILQPDEFQKRL 369
+V++++ + Q+ L
Sbjct: 576 AKEENVILVRLSQIQRDL 593
>UNIPROTKB|F1S3V8 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0036310 "annealing
helicase activity" evidence=IEA] [GO:0010212 "response to ionizing
radiation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0042493 GO:GO:0003677
GO:GO:0010212 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 OMA:TYQALMG EMBL:CU694667
Ensembl:ENSSSCT00000004320 Uniprot:F1S3V8
Length = 747
Score = 359 (131.4 bits), Expect = 6.6e-30, P = 6.6e-30
Identities = 140/536 (26%), Positives = 233/536 (43%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG F+W E S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVRFLW----------ECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 201 LRQSPDCKPEIDKAVVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 244
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F +L G G + GL + DEGH
Sbjct: 245 AGSKDEIDQKLEGFMNQRGARVPSPILIISYETF-RLHVGVLQKGSV----GLVICDEGH 299
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ-------EFGE---- 291
+N + ++AL + T RR+++SGTP QN+ E + + V EF +
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGLLGTAHEFKKRFEL 359
Query: 292 -VLR----TVRKSGREISKAKHASLISSIGRCANHR-DDXXXXXXXXXIAPFVNVHKGTV 345
+L+ + R + + + L S + RC R D I V T
Sbjct: 360 PILKGRDAAASEEDRRLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRL-TP 418
Query: 346 LQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN-YCXXXXXXXXXXXXQQ--FFE 402
LQ L + + +P E + +V + S L C ++ F
Sbjct: 419 LQTEL--YKRFLRQAKPAEELREGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFAG 476
Query: 403 SFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQLRHR 459
+ D + L+P+ K L +L ++ +++KV++ S Y + L L + R R
Sbjct: 477 ALDFFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRAR 536
Query: 460 FNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
LY +DG +KKR + N PSS + + S+KA G+NL+GA+R+V
Sbjct: 537 -------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLV 589
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 590 MFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
>RGD|1310600 [details] [associations]
symbol:Rad54l "RAD54 like (S. cerevisiae)" species:10116 "Rattus
norvegicus" [GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0006974 "response to
DNA damage stimulus" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0010212 "response to ionizing radiation"
evidence=ISO] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0042493 "response to drug" evidence=ISO]
[GO:0051276 "chromosome organization" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1310600 RGD:1561889 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 EMBL:CH473954 GO:GO:0004386
GO:GO:0003712 CTD:23132 KO:K10876 OrthoDB:EOG4X6C7G
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 IPI:IPI00196576 RefSeq:NP_001127992.1
UniGene:Rn.52847 Ensembl:ENSRNOT00000018475 GeneID:363135
KEGG:rno:363135 NextBio:682567 Uniprot:D3ZV87
Length = 1299
Score = 232 (86.7 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 64/162 (39%), Positives = 85/162 (52%)
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFN----WREGQ-------EVLY--MD 472
F LI + +K+LVFSQ + L LI E L R EGQ V Y +D
Sbjct: 726 FHLIEESVKLGDKILVFSQSLSTLALIEEFLGKRDMPCPPGAEGQGAQKWVRNVSYFRLD 785
Query: 473 GKQDVKKRQSSINVLNDPSSQAR-IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531
G +R+ IN NDPS+ + L ST+A C G+NL+GA+RVV+ D WNP + QA
Sbjct: 786 GSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQA 845
Query: 532 ISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+ R YR GQK+ ++Y L+ TLE RQ K S+ V
Sbjct: 846 VCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRV 887
Score = 117 (46.2 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 29/95 (30%), Positives = 46/95 (48%)
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
L P+ + + + PHQ G F++ N+ L+ K S+ G GCI++H+ G GKT
Sbjct: 262 LAPQ-LARAVKPHQIGGIRFLYDNLVES--LERFKTSS----GFGCILAHSMGLGKTLQV 314
Query: 121 LVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155
+ F+ + P + I P + L W EF W
Sbjct: 315 ISFIDVLFRHTPAKTVLAIVPVNTLQNWLAEFNMW 349
Score = 116 (45.9 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 37/138 (26%), Positives = 59/138 (42%)
Query: 233 PGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GE 291
P + + DEGH +N +AL I++RRR++L+G P QNN E + VR +F G
Sbjct: 456 PDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGT 515
Query: 292 VLRTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPFVNVHKGTVLQESLP 351
R I + R +R + FV TVL+ LP
Sbjct: 516 RQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSL----LEGFVQRRGHTVLKIHLP 571
Query: 352 GLRHSVVILQPDEFQKRL 369
+V++++ + Q+ L
Sbjct: 572 AKEENVILVRLSQIQRDL 589
>RGD|1561889 [details] [associations]
symbol:Rad54l2 "Rad54 like 2 (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0019901 "protein kinase binding" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1310600 RGD:1561889 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 EMBL:CH473954 GO:GO:0004386
GO:GO:0003712 CTD:23132 KO:K10876 OrthoDB:EOG4X6C7G
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 IPI:IPI00196576 RefSeq:NP_001127992.1
UniGene:Rn.52847 Ensembl:ENSRNOT00000018475 GeneID:363135
KEGG:rno:363135 NextBio:682567 Uniprot:D3ZV87
Length = 1299
Score = 232 (86.7 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 64/162 (39%), Positives = 85/162 (52%)
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFN----WREGQ-------EVLY--MD 472
F LI + +K+LVFSQ + L LI E L R EGQ V Y +D
Sbjct: 726 FHLIEESVKLGDKILVFSQSLSTLALIEEFLGKRDMPCPPGAEGQGAQKWVRNVSYFRLD 785
Query: 473 GKQDVKKRQSSINVLNDPSSQAR-IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531
G +R+ IN NDPS+ + L ST+A C G+NL+GA+RVV+ D WNP + QA
Sbjct: 786 GSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQA 845
Query: 532 ISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+ R YR GQK+ ++Y L+ TLE RQ K S+ V
Sbjct: 846 VCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRV 887
Score = 117 (46.2 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 29/95 (30%), Positives = 46/95 (48%)
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
L P+ + + + PHQ G F++ N+ L+ K S+ G GCI++H+ G GKT
Sbjct: 262 LAPQ-LARAVKPHQIGGIRFLYDNLVES--LERFKTSS----GFGCILAHSMGLGKTLQV 314
Query: 121 LVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155
+ F+ + P + I P + L W EF W
Sbjct: 315 ISFIDVLFRHTPAKTVLAIVPVNTLQNWLAEFNMW 349
Score = 116 (45.9 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 37/138 (26%), Positives = 59/138 (42%)
Query: 233 PGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GE 291
P + + DEGH +N +AL I++RRR++L+G P QNN E + VR +F G
Sbjct: 456 PDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGT 515
Query: 292 VLRTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPFVNVHKGTVLQESLP 351
R I + R +R + FV TVL+ LP
Sbjct: 516 RQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSL----LEGFVQRRGHTVLKIHLP 571
Query: 352 GLRHSVVILQPDEFQKRL 369
+V++++ + Q+ L
Sbjct: 572 AKEENVILVRLSQIQRDL 589
>UNIPROTKB|H0Y760 [details] [associations]
symbol:RAD54L2 "Helicase ARIP4" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AC099050 EMBL:AC113933 HGNC:HGNC:29123
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AC092037
ProteinModelPortal:H0Y760 Ensembl:ENST00000432863 Uniprot:H0Y760
Length = 1296
Score = 231 (86.4 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 63/162 (38%), Positives = 85/162 (52%)
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF----NWREGQ-------EVLY--MD 472
F LI + +K+LVFSQ + L LI E L R EGQ + Y +D
Sbjct: 556 FHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLD 615
Query: 473 GKQDVKKRQSSINVLNDPSSQAR-IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531
G +R+ IN NDPS+ + L ST+A C G+NL+GA+RVV+ D WNP + QA
Sbjct: 616 GSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQA 675
Query: 532 ISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+ R YR GQK+ ++Y L+ TLE RQ K S+ V
Sbjct: 676 VCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRV 717
Score = 119 (46.9 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 45/163 (27%), Positives = 68/163 (41%)
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
L P+ + + + PHQ G F++ N+ L+ K S+ G GCI++H+ G GKT
Sbjct: 92 LAPQ-LARAVKPHQIGGIRFLYDNLVES--LERFKTSS----GFGCILAHSMGLGKTLQV 144
Query: 121 LVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIP--FYNLNKPELSGKENNGAV 178
+ F+ + P + I P + L W EF W + P NKPE
Sbjct: 145 ISFIDVLFRHTPAKTVLAIVPVNTLQNWLAEFNMW-LPPPEALPADNKPEEVQPRFFKVH 203
Query: 179 ALMDNRKR--GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
L D K R KV + W G+L + Y ++ L
Sbjct: 204 ILNDEHKTMASRAKV-------MADWVSEGGVLLMGYEMYRLL 239
Score = 115 (45.5 bits), Expect = 1.2e-29, Sum P(3) = 1.2e-29
Identities = 37/138 (26%), Positives = 59/138 (42%)
Query: 233 PGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GE 291
P + + DEGH +N +AL I++RRR++L+G P QNN E + VR +F G
Sbjct: 286 PDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGT 345
Query: 292 VLRTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPFVNVHKGTVLQESLP 351
R I + R +R + FV TVL+ LP
Sbjct: 346 RQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSL----LEGFVQRRGHTVLKIHLP 401
Query: 352 GLRHSVVILQPDEFQKRL 369
+V++++ + Q+ L
Sbjct: 402 AKEENVILVRLSKIQRDL 419
>UNIPROTKB|Q9Y4B4 [details] [associations]
symbol:RAD54L2 "Helicase ARIP4" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
GO:GO:0003712 EMBL:AC099050 EMBL:AC113933 EMBL:AB018352
EMBL:BC001474 EMBL:BC024298 IPI:IPI00294787 RefSeq:NP_055921.2
UniGene:Hs.105399 HSSP:Q97XQ5 ProteinModelPortal:Q9Y4B4 SMR:Q9Y4B4
DIP:DIP-47284N IntAct:Q9Y4B4 MINT:MINT-3086380 STRING:Q9Y4B4
PhosphoSite:Q9Y4B4 DMDM:296439458 PaxDb:Q9Y4B4 PRIDE:Q9Y4B4
DNASU:23132 Ensembl:ENST00000409535 Ensembl:ENST00000565618
GeneID:23132 KEGG:hsa:23132 UCSC:uc003dbj.3 CTD:23132
GeneCards:GC03P051637 HGNC:HGNC:29123 HPA:HPA035004
neXtProt:NX_Q9Y4B4 PharmGKB:PA143485591 eggNOG:COG0553
HOGENOM:HOG000168429 HOVERGEN:HBG104283 InParanoid:Q9Y4B4 KO:K10876
OMA:HNLTTPF OrthoDB:EOG4X6C7G SABIO-RK:Q9Y4B4 GenomeRNAi:23132
NextBio:44383 ArrayExpress:Q9Y4B4 Bgee:Q9Y4B4 CleanEx:HS_RAD54L2
Genevestigator:Q9Y4B4 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Uniprot:Q9Y4B4
Length = 1467
Score = 231 (86.4 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 63/162 (38%), Positives = 85/162 (52%)
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF----NWREGQ-------EVLY--MD 472
F LI + +K+LVFSQ + L LI E L R EGQ + Y +D
Sbjct: 727 FHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLD 786
Query: 473 GKQDVKKRQSSINVLNDPSSQAR-IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531
G +R+ IN NDPS+ + L ST+A C G+NL+GA+RVV+ D WNP + QA
Sbjct: 787 GSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQA 846
Query: 532 ISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+ R YR GQK+ ++Y L+ TLE RQ K S+ V
Sbjct: 847 VCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRV 888
Score = 119 (46.9 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 45/163 (27%), Positives = 68/163 (41%)
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
L P+ + + + PHQ G F++ N+ L+ K S+ G GCI++H+ G GKT
Sbjct: 263 LAPQ-LARAVKPHQIGGIRFLYDNLVES--LERFKTSS----GFGCILAHSMGLGKTLQV 315
Query: 121 LVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIP--FYNLNKPELSGKENNGAV 178
+ F+ + P + I P + L W EF W + P NKPE
Sbjct: 316 ISFIDVLFRHTPAKTVLAIVPVNTLQNWLAEFNMW-LPPPEALPADNKPEEVQPRFFKVH 374
Query: 179 ALMDNRKR--GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
L D K R KV + W G+L + Y ++ L
Sbjct: 375 ILNDEHKTMASRAKV-------MADWVSEGGVLLMGYEMYRLL 410
Score = 115 (45.5 bits), Expect = 1.9e-29, Sum P(3) = 1.9e-29
Identities = 37/138 (26%), Positives = 59/138 (42%)
Query: 233 PGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GE 291
P + + DEGH +N +AL I++RRR++L+G P QNN E + VR +F G
Sbjct: 457 PDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGT 516
Query: 292 VLRTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPFVNVHKGTVLQESLP 351
R I + R +R + FV TVL+ LP
Sbjct: 517 RQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSL----LEGFVQRRGHTVLKIHLP 572
Query: 352 GLRHSVVILQPDEFQKRL 369
+V++++ + Q+ L
Sbjct: 573 AKEENVILVRLSKIQRDL 590
>ZFIN|ZDB-GENE-030912-11 [details] [associations]
symbol:atrx "alpha thalassemia/mental retardation
syndrome X-linked homolog (human)" species:7955 "Danio rerio"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 ZFIN:ZDB-GENE-030912-11 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
InterPro:IPR025766 PROSITE:PS51533 EMBL:CR931764 EMBL:CR855117
IPI:IPI00899757 Ensembl:ENSDART00000127594 Uniprot:E7F4M2
Length = 2011
Score = 223 (83.6 bits), Expect = 2.4e-29, Sum P(2) = 2.4e-29
Identities = 66/244 (27%), Positives = 113/244 (46%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
V R++ K+ PHQ +G +F+W + G+GCI++H G GKT +
Sbjct: 1106 VHRNMVTKLKPHQVDGVQFMWDCCCESV------RKVEKSAGSGCILAHCMGLGKTLQVV 1159
Query: 122 VFLQAYM---KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV 178
L + KL+ +++ P + +L W EF+KW + L +E+
Sbjct: 1160 TLLHTVLLCEKLN-FSTALVVCPLNTVLNWLNEFEKW----------QEGLKDEESLEVT 1208
Query: 179 ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG---------IL 229
L KR + + Y L W+ G++ + Y ++ L G + L
Sbjct: 1209 ELA-TVKRPQERA----YA-LQRWQEDGGVMIMGYEMYRNLTQGRNIKSKKLKETFQKTL 1262
Query: 230 LDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF 289
+D P + DEGH +N+ + + KA++ IKTRRR++L+GTP QNN E ++ +++
Sbjct: 1263 VD-PDFVICDEGHVLKNEASAVSKAMNSIKTRRRVVLTGTPLQNNLIEYHCMVNFIKENL 1321
Query: 290 -GEV 292
G V
Sbjct: 1322 LGSV 1325
Score = 197 (74.4 bits), Expect = 2.4e-29, Sum P(2) = 2.4e-29
Identities = 73/218 (33%), Positives = 104/218 (47%)
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIME--QLRHRFNWREGQEVLYM-DGKQ----DVK 478
F ++ L ++KVLVFSQ + L LI + +L R EG+E Y +GK D
Sbjct: 1567 FEILRLAEEVDDKVLVFSQSLISLDLIEDFLELAGRAK-EEGKESPYKGEGKWFRNIDYY 1625
Query: 479 KRQSSINVL---------NDPSS-QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVE 528
+ S N L ND S+ + R+ L ST+A GINLV A+RV++ D WNP +
Sbjct: 1626 RLDGSTNALTRKKWAEDFNDISNVRGRLFLISTRAGSLGINLVAANRVIIFDASWNPSYD 1685
Query: 529 RQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTAS 588
Q+I R YR GQ + V+VY + T+E RQ K ++ F D ++
Sbjct: 1686 IQSIFRVYRFGQVKTVYVYRFLAQGTMEEKIYDRQVAK---QSLSFRVVDQQQIERHFTM 1742
Query: 589 EPLEDKILEEMAQLYNNPSETLINAIIPQ-PKETELIE 625
L + E QL ++PSE P PK+ L E
Sbjct: 1743 NELTELYTFEPDQL-DDPSEKKSKRATPMLPKDPVLAE 1779
Score = 38 (18.4 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 164 LNKPELSGKENNGAVALMDNRKRGRGKV 191
L+ E E N + +KRGR KV
Sbjct: 909 LSLSEGESDEENAVKNKKETKKRGRRKV 936
>UNIPROTKB|Q9DG67 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 CTD:25788
KO:K10877 EMBL:AF178529 IPI:IPI00590839 RefSeq:NP_990041.1
UniGene:Gga.2372 ProteinModelPortal:Q9DG67 STRING:Q9DG67
PRIDE:Q9DG67 GeneID:395449 KEGG:gga:395449 HOGENOM:HOG000204521
HOVERGEN:HBG058654 InParanoid:Q9DG67 OrthoDB:EOG4SBDX5
NextBio:20815533 Uniprot:Q9DG67
Length = 918
Score = 235 (87.8 bits), Expect = 7.3e-29, Sum P(3) = 7.3e-29
Identities = 53/145 (36%), Positives = 84/145 (57%)
Query: 422 IKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQ 481
+ + L + ELS++E+V++ S Y + L +++E + G +DG V +RQ
Sbjct: 653 VLVKLLAAIRELSSSERVVLVSNYTQTLNVLLETCKCY-----GYSYTRLDGNTPVSQRQ 707
Query: 482 SSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQK 541
++ N S A I L S+KA G+NLVGAS ++L D+ WNP + QA++R +R GQK
Sbjct: 708 QIVDSFNSKFSPAFIFLLSSKAGGVGLNLVGASHLILYDIDWNPATDIQAMARVWRDGQK 767
Query: 542 RVVHVYHLITSETLEWDKLRRQARK 566
VH+Y L+T+ T+E +RQ K
Sbjct: 768 CTVHIYRLLTTGTIEEKIYQRQISK 792
Score = 118 (46.6 bits), Expect = 7.3e-29, Sum P(3) = 7.3e-29
Identities = 43/163 (26%), Positives = 67/163 (41%)
Query: 208 ILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILS 267
++ +SY + L S D++ I +L + DEGH +N AL+ + RRIIL+
Sbjct: 412 VMIISYEML--LRSLDQIQAIEFNL---LICDEGHRLKNSSIKTTTALTNLSCERRIILT 466
Query: 268 GTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE-ISKAKHASLISSIGRCANHRDDXX 326
GTP QN+ QE + V L T RK E I +++ S R
Sbjct: 467 GTPIQNDLQEFYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSATKEEKDLGEKR---- 522
Query: 327 XXXXXXXIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRL 369
F+ V+ + LP + +++ QP Q L
Sbjct: 523 AAELTRLTGLFILRRTQEVINKFLPPKKENIIFCQPTALQLEL 565
Score = 98 (39.6 bits), Expect = 7.3e-29, Sum P(3) = 7.3e-29
Identities = 29/97 (29%), Positives = 51/97 (52%)
Query: 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT--GLTLVF 123
+ + PHQREG F+++ + G ++ S G G I++ G GKT ++LV+
Sbjct: 299 IANNLRPHQREGIVFLYECVMG------MRVS----GRFGAILADEMGLGKTLQCISLVW 348
Query: 124 LQAYMKLHPRCRPV-----IIAPRSMLLTWEEEFKKW 155
++ C+PV I+ P S++ W++EF+KW
Sbjct: 349 TLLRQGVYG-CKPVLKRALIVTPGSLVKNWKKEFQKW 384
>UNIPROTKB|Q29KH2 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:46245 "Drosophila pseudoobscura pseudoobscura"
[GO:0000711 "meiotic DNA repair synthesis" evidence=ISS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISS] [GO:0006338
"chromatin remodeling" evidence=ISS] [GO:0010212 "response to
ionizing radiation" evidence=ISS] [GO:0043150 "DNA synthesis
involved in double-strand break repair via homologous
recombination" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH379061 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001356143.2
GeneID:4816519 KEGG:dpo:Dpse_GA17651 FlyBase:FBgn0077662
InParanoid:Q29KH2 Uniprot:Q29KH2
Length = 782
Score = 232 (86.7 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
Identities = 54/167 (32%), Positives = 95/167 (56%)
Query: 415 KLDPEAGIKTR---FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYM 471
+++PE K + F+L + N+KV++ S Y + L L EQL + + G + +
Sbjct: 490 EINPELSGKFKLLDFMLAAIRAHGNDKVVLISNYTQTLDLF-EQLARKRKY--G--FVRL 544
Query: 472 DGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531
DG +KKR ++ NDP S + + S+KA G+NL+GA+R+ + D WNP + QA
Sbjct: 545 DGTMSIKKRSKVVDRFNDPESDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQA 604
Query: 532 ISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
++R +R GQK+ ++Y L+ S ++E L+RQ K S+ + +++
Sbjct: 605 MARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNE 651
Score = 171 (65.3 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
Identities = 51/188 (27%), Positives = 91/188 (48%)
Query: 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIP 160
G NGCI++ G GKT + + +K C+P I + ++++ K W +
Sbjct: 172 GNFNGCIMADEMGLGKTLQCVALVWTLLKQSAECKPTI--NKCIIVSPSSLVKNWEKEFT 229
Query: 161 FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV 220
+ L G+ + +A+ K + L ++ S ++GT +L +SY F +
Sbjct: 230 KW------LHGRMH--CLAMEGGSKENTVRA-LEQFSMNASTRLGTPVLLISYETFR--I 278
Query: 221 SGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELEN 280
+ L + G+ + DEGH +N D ++AL +KT+RR++LSGTP QN+ E +
Sbjct: 279 YAEILCKYEV---GMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFS 335
Query: 281 TLSLVRQE 288
++ V E
Sbjct: 336 LVNFVNPE 343
Score = 128 (50.1 bits), Expect = 3.3e-24, Sum P(2) = 3.3e-24
Identities = 29/89 (32%), Positives = 45/89 (50%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + + +K
Sbjct: 154 PHQREGVRFMYECVEG-----------KRGNFNGCIMADEMGLGKTLQCVALVWTLLKQS 202
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKW 155
C+P +I++P S++ WE+EF KW
Sbjct: 203 AECKPTINKCIIVSPSSLVKNWEKEFTKW 231
>UNIPROTKB|B4M9A8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7244 "Drosophila virilis" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CH940654
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043150 GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG
RefSeq:XP_002057711.1 STRING:B4M9A8 EnsemblMetazoa:FBtr0234205
GeneID:6634100 KEGG:dvi:Dvir_GJ18280 FlyBase:FBgn0205441
InParanoid:B4M9A8 Uniprot:B4M9A8
Length = 786
Score = 231 (86.4 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
Identities = 49/153 (32%), Positives = 90/153 (58%)
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSIN 485
F+L + ++++KV++ S Y + L L EQL + + + +DG +KKR ++
Sbjct: 500 FMLAAIRANSDDKVVLISNYTQTLDLF-EQLARKRKY----SYVRLDGTMTIKKRSKVVD 554
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
NDP++ + + S+KA G+NL+GA+R+ + D WNP + QA++R +R GQK+ +
Sbjct: 555 RFNDPATDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCY 614
Query: 546 VYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
+Y L+ S ++E L+RQ K S+ + ++D
Sbjct: 615 IYRLVASGSIEEKILQRQTHKKSLSSSIIDNND 647
Score = 172 (65.6 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
Identities = 53/189 (28%), Positives = 92/189 (48%)
Query: 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIP 160
G NGCI++ G GKT + ++ P C+P I ++++++ K W +
Sbjct: 169 GNFNGCIMADEMGLGKTLQCVTLTWTLLRQSPDCKPTI--SKAIVVSPSSLVKNWEKEFT 226
Query: 161 FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV 220
+ L G+ + +A+ K + L ++ + + GT +L +SY F +L
Sbjct: 227 KW------LHGRMH--CLAMEGGSKEDTTRT-LEQFAMNTATRCGTPVLLISYETF-RLY 276
Query: 221 SGDELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
S IL G+ + DEGH +N D ++AL +KT+RR++LSGTP QN+ E
Sbjct: 277 SH-----ILCKTEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYF 331
Query: 280 NTLSLVRQE 288
+ ++ V E
Sbjct: 332 SLVNFVNPE 340
Score = 128 (50.1 bits), Expect = 4.3e-24, Sum P(2) = 4.3e-24
Identities = 28/89 (31%), Positives = 45/89 (50%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + ++
Sbjct: 151 PHQREGVRFMYECVEG-----------KRGNFNGCIMADEMGLGKTLQCVTLTWTLLRQS 199
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKW 155
P C+P ++++P S++ WE+EF KW
Sbjct: 200 PDCKPTISKAIVVSPSSLVKNWEKEFTKW 228
Score = 43 (20.2 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 235 LFVFDEGHTPRNDDTCM 251
LF+FD P ND+ M
Sbjct: 585 LFMFDPDWNPANDEQAM 601
>TAIR|locus:2094083 [details] [associations]
symbol:RAD54 "homolog of RAD54" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=ISS] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=RCA;IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0010332 "response to gamma
radiation" evidence=IEP;RCA] [GO:0006302 "double-strand break
repair" evidence=RCA] [GO:0006310 "DNA recombination" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0007126 "meiosis" evidence=RCA] [GO:0007129
"synapsis" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0007140 "male meiosis"
evidence=RCA] [GO:0010212 "response to ionizing radiation"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016444 "somatic cell DNA
recombination" evidence=RCA] [GO:0032204 "regulation of telomere
maintenance" evidence=RCA] [GO:0043247 "telomere maintenance in
response to DNA damage" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0045003 "double-strand break repair via synthesis-dependent
strand annealing" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003677 GO:GO:0010332 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0045003
HOGENOM:HOG000204521 KO:K10875 EMBL:DQ912973 EMBL:AB250666
IPI:IPI00531645 RefSeq:NP_188552.3 UniGene:At.53386 SMR:Q0PCS3
IntAct:Q0PCS3 STRING:Q0PCS3 EnsemblPlants:AT3G19210.1 GeneID:821455
KEGG:ath:AT3G19210 TAIR:At3g19210 InParanoid:Q0PCS3 OMA:SDTHDRF
ProtClustDB:CLSN2693236 Genevestigator:Q0PCS3 Uniprot:Q0PCS3
Length = 910
Score = 227 (85.0 bits), Expect = 1.3e-28, Sum P(3) = 1.3e-28
Identities = 55/155 (35%), Positives = 88/155 (56%)
Query: 412 ARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYM 471
A ++L + + +R LL L T++++++ S Y + L L + R R L +
Sbjct: 528 AWVELSGKMHVLSR-LLANLRRKTDDRIVLVSNYTQTLDLFAQLCRER-----RYPFLRL 581
Query: 472 DGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531
DG + KRQ +N LNDP+ L S+KA G+NL+GA+R+VL D WNP ++QA
Sbjct: 582 DGSTTISKRQKLVNRLNDPTKDEFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQA 641
Query: 532 ISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+R +R GQK+ V+VY +++ T+E +RQ K
Sbjct: 642 AARVWRDGQKKRVYVYRFLSTGTIEEKVYQRQMSK 676
Score = 116 (45.9 bits), Expect = 1.3e-28, Sum P(3) = 1.3e-28
Identities = 31/93 (33%), Positives = 49/93 (52%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT--GLTLVFL- 124
K + PHQREG +F++ ++G L S + NGCI++ G GKT +TL++
Sbjct: 178 KFLRPHQREGVQFMFDCVSG------LHGSANI---NGCILADDMGLGKTLQSITLLYTL 228
Query: 125 --QAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155
Q + + +I+ P S++ WE E KKW
Sbjct: 229 LCQGFDGTPMVKKAIIVTPTSLVSNWEAEIKKW 261
Score = 106 (42.4 bits), Expect = 1.3e-28, Sum P(3) = 1.3e-28
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQE 277
L + DE H +ND T +AL+ + +RR++LSGTP QN+ +E
Sbjct: 318 LLICDEAHRLKNDQTLTNRALASLTCKRRVLLSGTPMQNDLEE 360
>SGD|S000003131 [details] [associations]
symbol:RAD54 "DNA-dependent ATPase that stimulates strand
exchange" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IMP;IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0015616 "DNA translocase activity"
evidence=IDA] [GO:0032392 "DNA geometric change" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0032079 "positive regulation
of endodeoxyribonuclease activity" evidence=IDA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
evidence=IMP] [GO:0045002 "double-strand break repair via
single-strand annealing" evidence=IMP] [GO:0006338 "chromatin
remodeling" evidence=IDA] [GO:0030491 "heteroduplex formation"
evidence=IDA] [GO:0045003 "double-strand break repair via
synthesis-dependent strand annealing" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 SGD:S000003131 GO:GO:0005524
GO:GO:0005634 EMBL:BK006941 GO:GO:0006338 GO:GO:0004386 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0045003 GO:GO:0000722
GO:GO:0015616 GO:GO:0032392 GO:GO:0032079 HOGENOM:HOG000204521
GO:GO:0030491 KO:K10875 OMA:LSEYFAL OrthoDB:EOG4T1MVP EMBL:M63232
EMBL:Z72685 PIR:JH0440 RefSeq:NP_011352.1 ProteinModelPortal:P32863
SMR:P32863 DIP:DIP-509N IntAct:P32863 MINT:MINT-605745
STRING:P32863 EnsemblFungi:YGL163C GeneID:852713 KEGG:sce:YGL163C
CYGD:YGL163c NextBio:972079 Genevestigator:P32863
GermOnline:YGL163C Uniprot:P32863
Length = 898
Score = 240 (89.5 bits), Expect = 1.7e-28, Sum P(4) = 1.7e-28
Identities = 55/170 (32%), Positives = 97/170 (57%)
Query: 409 AKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEV 468
A+ + K + I RFL ++ +++K+++ S Y + L LI + R++
Sbjct: 646 ARDVQTKYSAKFSILERFLH-KIKTESDDKIVLISNYTQTLDLIEKMCRYKH-----YSA 699
Query: 469 LYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVE 528
+ +DG + KRQ ++ NDP Q I L S+KA GINL+GA+R++L+D WNP +
Sbjct: 700 VRLDGTMSINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAAD 759
Query: 529 RQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
+QA++R +R GQK+ +Y I++ T+E +RQ+ K+ S+ V + +
Sbjct: 760 QQALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDAKE 809
Score = 159 (61.0 bits), Expect = 1.7e-28, Sum P(4) = 1.7e-28
Identities = 55/198 (27%), Positives = 87/198 (43%)
Query: 95 KNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-----VIIAPRSMLLTWE 149
K + G GCI++ G GKT + + ++ P+ + +I+ P S++ W
Sbjct: 320 KTEQNNRGAYGCIMADEMGLGKTLQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNWA 379
Query: 150 EEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGI- 208
E KW + L + GK+++ G G + + + ++ G I
Sbjct: 380 NELIKW---LGPNTLTPLAVDGKKSS----------MGGGNTTVSQAIHAWAQAQGRNIV 426
Query: 209 ---LGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRII 265
L +SY + V D+L + GL + DEGH +N D+ F AL I RR+I
Sbjct: 427 KPVLIISYETLRRNV--DQLKNCNV---GLMLADEGHRLKNGDSLTFTALDSISCPRRVI 481
Query: 266 LSGTPFQNNFQELENTLS 283
LSGTP QN+ E LS
Sbjct: 482 LSGTPIQNDLSEYFALLS 499
Score = 49 (22.3 bits), Expect = 1.7e-28, Sum P(4) = 1.7e-28
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELK 95
K + PHQ EG F+++ + G + D L+
Sbjct: 269 KILRPHQVEGVRFLYRCVTGLVMKDYLE 296
Score = 39 (18.8 bits), Expect = 1.7e-28, Sum P(4) = 1.7e-28
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 19 AEWREYNNVDPSFLDDLNSRDSGFDSQT-GCDP--FTHAQGTV 58
A+ EYN+ D SF R +Q DP +H Q T+
Sbjct: 85 ADEAEYNSQDISFSQLTKRRKDALSAQRLAKDPTRLSHIQYTL 127
Score = 37 (18.1 bits), Expect = 2.9e-07, Sum P(4) = 2.9e-07
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 452 IMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINV 486
I E++ R + + +D K+DV++ SS N+
Sbjct: 786 IEEKIFQRQSMKMSLSSCVVDAKEDVERLFSSDNL 820
>WB|WBGene00007761 [details] [associations]
symbol:rad-26 species:6239 "Caenorhabditis elegans"
[GO:0007186 "G-protein coupled receptor signaling pathway"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 KO:K10876 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:Z54236 PIR:T19508
RefSeq:NP_501545.1 ProteinModelPortal:Q18241 SMR:Q18241
DIP:DIP-26472N IntAct:Q18241 MINT:MINT-1047515 STRING:Q18241
PaxDb:Q18241 EnsemblMetazoa:C27B7.4 GeneID:177706
KEGG:cel:CELE_C27B7.4 UCSC:C27B7.4 CTD:177706 WormBase:C27B7.4
HOGENOM:HOG000022111 InParanoid:Q18241 OMA:MERSIFN NextBio:898020
Uniprot:Q18241
Length = 1274
Score = 215 (80.7 bits), Expect = 2.0e-28, Sum P(3) = 2.0e-28
Identities = 63/198 (31%), Positives = 94/198 (47%)
Query: 419 EAGIKTRFLLILLELSTN--EKVLVFSQYIEPLTLIMEQLRHRF---------NWREGQE 467
E G K L +L+ ST EK+L+FSQ + L ++ E L+ R W + +
Sbjct: 774 ENGYKIVISLEILDESTQIGEKILIFSQNLTALDMLEEILKKRQIRGKDGPGQRWEKNRN 833
Query: 468 VLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFV 527
L +DG R+ IN N + + L ST+A GINLV A+R +++D WNP
Sbjct: 834 YLRLDGTTSGADREKLINRFNSEPGLS-LFLISTRAGSLGINLVSANRCIIIDACWNPCH 892
Query: 528 ERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTA 587
+ QA+ R YR GQ++ VY LI ++E RQ K V D D +
Sbjct: 893 DAQAVCRVYRYGQQKKTFVYRLIMDNSMERSIFNRQISKHGLQQRVV---DDAQVDANIS 949
Query: 588 SEPLEDKILEEMAQLYNN 605
+ LE ++ + AQ N+
Sbjct: 950 QKELETLLMYDEAQDVNH 967
Score = 128 (50.1 bits), Expect = 2.0e-28, Sum P(3) = 2.0e-28
Identities = 40/149 (26%), Positives = 65/149 (43%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ G F++ N L E K S G GCI++H+ G GKT + F + +++
Sbjct: 258 PHQLGGIRFMYDNTIES--LGEYKKSD----GFGCILAHSMGLGKTIQVITFSEIFLRAT 311
Query: 132 PRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKV 191
+ ++I P + + W E+ KW IP ++ + E L D K +V
Sbjct: 312 KAKKVLVIVPINTIQNWYSEYDKW---IPKFSDTGDRIRSFE---VFLLGDGVKTFDQRV 365
Query: 192 GLIRYVKLYSWKMGTGILGLSYRLFEKLV 220
LI W G++ + Y +F L+
Sbjct: 366 NLIE-----QWDQTGGVMLVGYDMFRLLI 389
Score = 111 (44.1 bits), Expect = 2.0e-28, Sum P(3) = 2.0e-28
Identities = 43/150 (28%), Positives = 68/150 (45%)
Query: 226 SGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
S +L P L V DEGH +N + L I T+RRI+L+G P QNN E + V
Sbjct: 450 SALLEPGPDLVVCDEGHKIKNITAEISMTLGAINTKRRIVLTGYPLQNNLLEYFCMIDFV 509
Query: 286 RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXX------IAPFVN 339
R ++ L T RKS + + I + G+C + D + FV
Sbjct: 510 RPKY---LGT-RKSFID----RFEKPIKN-GQCVDSSPDDVKIALQRTHVLVELVKGFVQ 560
Query: 340 VHKGTVLQESLPGLRHSVVILQPDEFQKRL 369
+L++ LP + V++L+ + Q++L
Sbjct: 561 RRTHHLLKKILPESKEYVLLLRKSQIQRQL 590
Score = 47 (21.6 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 19/64 (29%), Positives = 27/64 (42%)
Query: 231 DLPGLFVFDEG----HTPRNDDTCMF--KALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
+L L ++DE H N D F L I R + +G PF + +E+ SL
Sbjct: 952 ELETLLMYDEAQDVNHDKWNTDDWDFGDPVLDSITKRMSQMFAGKPFLHETLIMESEQSL 1011
Query: 285 VRQE 288
QE
Sbjct: 1012 SEQE 1015
Score = 40 (19.1 bits), Expect = 5.8e-10, Sum P(3) = 5.8e-10
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 578 DGGGNDQTTASEPLEDKILEEMAQLY-NNP--SETLI 611
D D +P+ D I + M+Q++ P ETLI
Sbjct: 968 DKWNTDDWDFGDPVLDSITKRMSQMFAGKPFLHETLI 1004
>UNIPROTKB|B4KHL5 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7230 "Drosophila mojavensis" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH933807 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043150 GO:GO:0000711 KO:K10875
OrthoDB:EOG4PC872 RefSeq:XP_002002852.1 EnsemblMetazoa:FBtr0161485
GeneID:6576868 KEGG:dmo:Dmoj_GI10760 FlyBase:FBgn0133523
InParanoid:B4KHL5 Uniprot:B4KHL5
Length = 783
Score = 229 (85.7 bits), Expect = 2.3e-28, Sum P(2) = 2.3e-28
Identities = 49/153 (32%), Positives = 90/153 (58%)
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSIN 485
F+L + ++++KV++ S Y + L L EQL + + + +DG +KKR ++
Sbjct: 500 FMLAAIRANSDDKVVLISNYTQTLDLF-EQLARKRKYT----YVRLDGTMTIKKRSKVVD 554
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
NDPS+ + + S+KA G+NL+GA+R+ + D WNP + QA++R +R GQK+ +
Sbjct: 555 RFNDPSTDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCY 614
Query: 546 VYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
+Y L+ S ++E L+RQ K S+ + +++
Sbjct: 615 IYRLVASGSIEEKILQRQTHKKSLSSTIIDNNE 647
Score = 171 (65.3 bits), Expect = 2.3e-28, Sum P(2) = 2.3e-28
Identities = 51/191 (26%), Positives = 93/191 (48%)
Query: 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIP 160
G NGCI++ G GKT + ++ P C+P I ++++++ K W +
Sbjct: 169 GNFNGCIMADEMGLGKTLQCVTLTWTLLRQSPDCKPTI--SKAIIVSPSSLVKNWEKEFT 226
Query: 161 FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSY---RLFE 217
+ L G+ + +A+ K + L ++ + + GT +L +SY RL+
Sbjct: 227 KW------LHGRMH--CLAMEGGSKEDTTRA-LEQFAMNTATRCGTPVLLISYETFRLYA 277
Query: 218 KLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQE 277
++ E+ G+ + DEGH +N D ++AL +KT+RR++LSGTP QN+ E
Sbjct: 278 HILCKTEV--------GMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTE 329
Query: 278 LENTLSLVRQE 288
+ ++ V E
Sbjct: 330 YFSLVNFVNPE 340
Score = 129 (50.5 bits), Expect = 5.6e-24, Sum P(2) = 5.6e-24
Identities = 29/89 (32%), Positives = 45/89 (50%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + ++
Sbjct: 151 PHQREGVRFMYECVEG-----------KRGNFNGCIMADEMGLGKTLQCVTLTWTLLRQS 199
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKW 155
P C+P +I++P S++ WE+EF KW
Sbjct: 200 PDCKPTISKAIIVSPSSLVKNWEKEFTKW 228
Score = 43 (20.2 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 235 LFVFDEGHTPRNDDTCM 251
LF+FD P ND+ M
Sbjct: 585 LFMFDPDWNPANDEQAM 601
>UNIPROTKB|B4JCS7 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7222 "Drosophila grimshawi" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043150 EMBL:CH916368
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001988299.1
STRING:B4JCS7 EnsemblMetazoa:FBtr0146056 GeneID:6562163
KEGG:dgr:Dgri_GH10642 FlyBase:FBgn0118123 InParanoid:B4JCS7
OMA:TYQALMG Uniprot:B4JCS7
Length = 786
Score = 233 (87.1 bits), Expect = 4.5e-28, Sum P(2) = 4.5e-28
Identities = 50/153 (32%), Positives = 90/153 (58%)
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSIN 485
F+L + ++++KV++ S Y + L L EQL + + + +DG +KKR ++
Sbjct: 500 FMLAAIRANSDDKVVLISNYTQTLDLF-EQLARKRKY----SYVRLDGTMTIKKRSKVVD 554
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
NDPSS + + S+KA G+NL+GA+R+ + D WNP + QA++R +R GQK+ +
Sbjct: 555 RFNDPSSDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCY 614
Query: 546 VYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
+Y L+ S ++E L+RQ K S+ + +++
Sbjct: 615 IYRLVASGSIEEKILQRQTHKKSLSSTIIDNNE 647
Score = 164 (62.8 bits), Expect = 4.5e-28, Sum P(2) = 4.5e-28
Identities = 51/191 (26%), Positives = 92/191 (48%)
Query: 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIP 160
G NGCI++ G GKT + ++ C+P I ++++++ K W +
Sbjct: 169 GSFNGCIMADEMGLGKTLQCVTLTWTLLRQSADCKPTI--SKAIVVSPSSLVKNWEKEFT 226
Query: 161 FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSY---RLFE 217
+ L G+ + +A+ K + L ++ S + GT +L +SY RL+
Sbjct: 227 KW------LHGRMH--CLAMEGGSKEETTRT-LEQFAMNTSTRCGTPVLLISYETFRLYA 277
Query: 218 KLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQE 277
++ E+ G+ + DEGH +N D ++AL +KT+RR++LSGTP QN+ E
Sbjct: 278 HILCKTEV--------GMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTE 329
Query: 278 LENTLSLVRQE 288
+ ++ V E
Sbjct: 330 YFSLVNFVNPE 340
Score = 120 (47.3 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 27/89 (30%), Positives = 44/89 (49%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + ++
Sbjct: 151 PHQREGVRFMYECVEG-----------KRGSFNGCIMADEMGLGKTLQCVTLTWTLLRQS 199
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKW 155
C+P ++++P S++ WE+EF KW
Sbjct: 200 ADCKPTISKAIVVSPSSLVKNWEKEFTKW 228
>UNIPROTKB|B4GS98 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7234 "Drosophila persimilis" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043150 EMBL:CH479189 GO:GO:0000711 KO:K10875
OrthoDB:EOG4PC872 RefSeq:XP_002021802.1 EnsemblMetazoa:FBtr0192316
GeneID:6596280 KEGG:dpe:Dper_GL26701 FlyBase:FBgn0164282
Uniprot:B4GS98
Length = 782
Score = 226 (84.6 bits), Expect = 4.9e-28, Sum P(2) = 4.9e-28
Identities = 53/167 (31%), Positives = 93/167 (55%)
Query: 415 KLDPEAGIKTR---FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYM 471
+++PE K + F+L + N+KV++ S Y + L L R R + G + +
Sbjct: 490 EINPELSGKFKLLDFMLAAIRAHGNDKVVLISNYTQTLDLFELLARKR---KYG--FVRL 544
Query: 472 DGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531
DG +KKR ++ NDP S + + S+KA G+NL+GA+R+ + D WNP + QA
Sbjct: 545 DGTMSIKKRSKVVDRFNDPESDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQA 604
Query: 532 ISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
++R +R GQK+ ++Y L+ S ++E L+RQ K S+ + +++
Sbjct: 605 MARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNE 651
Score = 171 (65.3 bits), Expect = 4.9e-28, Sum P(2) = 4.9e-28
Identities = 51/188 (27%), Positives = 91/188 (48%)
Query: 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIP 160
G NGCI++ G GKT + + +K C+P I + ++++ K W +
Sbjct: 172 GNFNGCIMADEMGLGKTLQCVALVWTLLKQSAECKPTI--NKCIIVSPSSLVKNWEKEFT 229
Query: 161 FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV 220
+ L G+ + +A+ K + L ++ S ++GT +L +SY F +
Sbjct: 230 KW------LHGRMH--CLAMEGGSKENTVRA-LEQFSMNASTRLGTPVLLISYETFR--I 278
Query: 221 SGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELEN 280
+ L + G+ + DEGH +N D ++AL +KT+RR++LSGTP QN+ E +
Sbjct: 279 YAEILCKYEV---GMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFS 335
Query: 281 TLSLVRQE 288
++ V E
Sbjct: 336 LVNFVNPE 343
Score = 128 (50.1 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
Identities = 29/89 (32%), Positives = 45/89 (50%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + + +K
Sbjct: 154 PHQREGVRFMYECVEG-----------KRGNFNGCIMADEMGLGKTLQCVALVWTLLKQS 202
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKW 155
C+P +I++P S++ WE+EF KW
Sbjct: 203 AECKPTINKCIIVSPSSLVKNWEKEFTKW 231
>UNIPROTKB|B4MX21 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7260 "Drosophila willistoni" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH963857 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG
RefSeq:XP_002065674.1 STRING:B4MX21 EnsemblMetazoa:FBtr0246224
GeneID:6642593 KEGG:dwi:Dwil_GK15573 FlyBase:FBgn0217578
InParanoid:B4MX21 Uniprot:B4MX21
Length = 784
Score = 226 (84.6 bits), Expect = 4.9e-28, Sum P(2) = 4.9e-28
Identities = 52/166 (31%), Positives = 94/166 (56%)
Query: 416 LDPEAGIKTR---FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMD 472
L+PE K F+L + ++++KV++ S Y + L L EQL + + + +D
Sbjct: 491 LNPELSGKFMLLDFMLATIRANSDDKVVLISNYTQTLDLF-EQLARKRKYT----FVRLD 545
Query: 473 GKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAI 532
G +KKR ++ NDP + + + S+KA G+NL+GA+R+ + D WNP + QA+
Sbjct: 546 GTMTIKKRSKVVDRFNDPENDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAM 605
Query: 533 SRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
+R +R GQK+ ++Y L+ S ++E L+RQ K S+ + +++
Sbjct: 606 ARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNE 651
Score = 171 (65.3 bits), Expect = 4.9e-28, Sum P(2) = 4.9e-28
Identities = 51/191 (26%), Positives = 95/191 (49%)
Query: 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIP 160
G NGCI++ G GKT + + ++ C+P I ++++++ K W +
Sbjct: 173 GNFNGCIMADEMGLGKTLQCVTLVWTLLRQSCECKPTIT--KAIIVSPSSLVKNWEKEFT 230
Query: 161 FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSY---RLFE 217
+ L G+ + +A+ K K L ++ S ++GT +L +SY R++
Sbjct: 231 KW------LHGRMH--CLAMEGGSKEDTIKA-LEQFSMNTSTRLGTPVLLISYETFRIYA 281
Query: 218 KLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQE 277
++ +E+ G+ + DEGH +N D ++AL +KT+RR++LSGTP QN+ E
Sbjct: 282 NILCQNEV--------GMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTE 333
Query: 278 LENTLSLVRQE 288
+ ++ V E
Sbjct: 334 YFSLVNFVNPE 344
Score = 121 (47.7 bits), Expect = 8.3e-23, Sum P(2) = 8.3e-23
Identities = 28/89 (31%), Positives = 44/89 (49%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F++ + G G NGCI++ G GKT + + ++
Sbjct: 155 PHQREGVRFMYDCVEG-----------KKGNFNGCIMADEMGLGKTLQCVTLVWTLLRQS 203
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKW 155
C+P +I++P S++ WE+EF KW
Sbjct: 204 CECKPTITKAIIVSPSSLVKNWEKEFTKW 232
>POMBASE|SPAC15A10.03c [details] [associations]
symbol:rad54 "DNA-dependent ATPase Rad54/Rhp54"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISM] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005819 "spindle"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0006311
"meiotic gene conversion" evidence=IMP] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0015616 "DNA translocase activity"
evidence=ISO] [GO:0030491 "heteroduplex formation" evidence=ISO]
[GO:0033170 "protein-DNA loading ATPase activity" evidence=TAS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC15A10.03c GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005819 GO:GO:0006338
GO:GO:0000724 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007131 GO:GO:0006311
GO:GO:0015616 HOGENOM:HOG000204521 GO:GO:0033170 GO:GO:0030491
KO:K10875 EMBL:Z29640 PIR:S41886 RefSeq:NP_594290.1
ProteinModelPortal:P41410 IntAct:P41410 STRING:P41410
EnsemblFungi:SPAC15A10.03c.1 GeneID:2542749 KEGG:spo:SPAC15A10.03c
OMA:LSEYFAL OrthoDB:EOG4T1MVP NextBio:20803794 Uniprot:P41410
Length = 852
Score = 241 (89.9 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 54/147 (36%), Positives = 85/147 (57%)
Query: 427 LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINV 486
+L ++ T++K+++ S Y L L + R R G + L +DG +V KRQ ++
Sbjct: 618 MLYQIKQETDDKIVLISNYTSTLDLFEQLCRAR-----GYKALRLDGTMNVNKRQRLVDT 672
Query: 487 LNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHV 546
NDP A + L S+KA GINL+GA+R++L D WNP ++QA++R +R GQK+ V
Sbjct: 673 FNDPEKDAFVFLLSSKAGGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQKKDCFV 732
Query: 547 YHLITSETLEWDKLRRQARKVWWSNMV 573
Y I + T+E +RQ+ K S+ V
Sbjct: 733 YRFIATGTIEEKIFQRQSHKQSLSSCV 759
Score = 154 (59.3 bits), Expect = 8.4e-28, Sum P(2) = 8.4e-28
Identities = 65/274 (23%), Positives = 116/274 (42%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRC-RPVIIAPRSMLLTWEEEFKKWGIDIPFY 162
NGCI++ G GKT + L +K P+ +P I ++++ K W ++ +
Sbjct: 288 NGCIMADEMGLGKTLQCIALLWTLLKQSPQAGKPTI--EKAIITCPSSLVKNWANELVKW 345
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKV-GLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
L K ++ ++D + + + L ++ ++ ++ +L SY V
Sbjct: 346 -LGKDAITP-------FILDGKSSKQELIMALQQWASVHGRQVTRPVLIASYETLRSYV- 396
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
+ L+ + G+ + DEGH +N D+ F AL ++ +RR+ILSGTP QN+ E +
Sbjct: 397 -EHLNNAEI---GMLLCDEGHRLKNSDSLTFTALDKLNVQRRVILSGTPIQNDLSEYFSL 452
Query: 282 LSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPFVN-- 339
L+ G + S +E K ++ +D +A VN
Sbjct: 453 LNFANP--G-----LLGSRQEFRKNYEIPILKGRDADGTEKDKENGDAKLAELAKIVNRF 505
Query: 340 VHKGT--VLQESLPGLRHSVVILQPDEFQKRLCK 371
+ + T +L + LP VV EFQ L K
Sbjct: 506 IIRRTNDILSKYLPVKYEHVVFCNLSEFQLSLYK 539
Score = 107 (42.7 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
Identities = 33/99 (33%), Positives = 46/99 (46%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ EG +F++K + G ID NGCI++ G GKT + L +K
Sbjct: 266 PHQIEGVKFLYKCVTGRIDRC----------ANGCIMADEMGLGKTLQCIALLWTLLKQS 315
Query: 132 PRC-RP-----VIIAPRSMLLTWEEEFKKW-GIDI--PF 161
P+ +P +I P S++ W E KW G D PF
Sbjct: 316 PQAGKPTIEKAIITCPSSLVKNWANELVKWLGKDAITPF 354
>UNIPROTKB|F1RPI9 [details] [associations]
symbol:LOC100514440 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:CU928419
EMBL:CU693469 EMBL:CU928840 EMBL:FP102832
Ensembl:ENSSSCT00000013595 OMA:GPDIVIC ArrayExpress:F1RPI9
Uniprot:F1RPI9
Length = 988
Score = 220 (82.5 bits), Expect = 9.0e-28, Sum P(3) = 9.0e-28
Identities = 67/239 (28%), Positives = 112/239 (46%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
V R++ K+ PHQ +G +F+W + T G+GCI++H G GKT +
Sbjct: 271 VHRNMVIKLKPHQVDGVQFMWDCCCESV------KKTKKSPGSGCILAHCMGLGKTLQVV 324
Query: 122 VFLQAYM---KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV 178
FL + KL +++ P + L W EF+KW + L E V
Sbjct: 325 SFLHTVLLCDKLD-FSTALVVCPLNTALNWMNEFEKW----------QEGLKDDEKLEKV 373
Query: 179 ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG---------IL 229
+ + KR + + Y+ L W+ G++ + Y ++ L G + L
Sbjct: 374 SELATVKRPQER----SYM-LQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKAL 428
Query: 230 LDL-PGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
+D P V DEGH +N+ + + KA++ I++RRRIIL+GTP QNN E ++ +++
Sbjct: 429 VDPGPDFVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKE 487
Score = 179 (68.1 bits), Expect = 9.0e-28, Sum P(3) = 9.0e-28
Identities = 40/107 (37%), Positives = 59/107 (55%)
Query: 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPSS-QARIMLASTKACCEGINLVGASRVVLLD 520
W + +DG + R+ ND ++ + R+ + STKA GINLV A+RV++ D
Sbjct: 798 WLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFD 857
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR-RQARK 566
WNP + Q+I R YR GQ + V+VY + T+E DK+ RQ K
Sbjct: 858 ASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTME-DKIYDRQVTK 903
Score = 52 (23.4 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 21/79 (26%), Positives = 35/79 (44%)
Query: 32 LDDLNSRDSGFDSQTGCDPF--THAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGI 89
LD ++ + G+ + D F + + T L D KK + G + + +G
Sbjct: 611 LDYISKENKGYFDEDSMDEFIASDSDETSMSLSSDDFTKKKKTKGKRGKKDSSSSGSGSD 670
Query: 90 -DLDELK--NSTSTGGGNG 105
D++ +K NS S GGG G
Sbjct: 671 NDVEVIKVWNSRSRGGGEG 689
Score = 44 (20.5 bits), Expect = 9.0e-28, Sum P(3) = 9.0e-28
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIMEQL 456
F ++ + +KVLVFSQ + L LI + L
Sbjct: 745 FEILRMAEEIGDKVLVFSQSLISLDLIEDFL 775
>UNIPROTKB|E1C8H5 [details] [associations]
symbol:ATRX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0070087 "chromo shadow domain binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0003682 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
OMA:GEGKWFR InterPro:IPR025766 PROSITE:PS51533 GO:GO:0000792
GO:GO:0000228 EMBL:AADN02013550 EMBL:AADN02013551 IPI:IPI00573178
Ensembl:ENSGALT00000012737 Uniprot:E1C8H5
Length = 2434
Score = 232 (86.7 bits), Expect = 1.9e-27, Sum P(3) = 1.9e-27
Identities = 69/233 (29%), Positives = 113/233 (48%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
V R + ++ PHQ +G +F+W + T T G+GCI++H G GKT +
Sbjct: 1494 VHRSIVTRLKPHQVDGVQFMWDCCCESV------KKTKTSPGSGCILAHCMGLGKTLQVV 1547
Query: 122 VFLQAYM---KLHPRCRPVIIAPRSMLLTWEEEFKKW--GIDIPFYNLNKPELSGKENNG 176
FL + KL+ R +++ P + L W EF+KW G++ L EL+ +
Sbjct: 1548 SFLHTVLLCDKLNFRTA-LVVCPLNTALNWLNEFEKWQEGLEDD-EKLEVCELATVKRPQ 1605
Query: 177 AVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYR-LFEKLVSGDELSGILLDL-PG 234
+ M R + G V +I Y + G + + +F K L+D P
Sbjct: 1606 ERSYMLQRWQDEGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKA---------LVDPGPD 1656
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
V DEGH +N+ + + KA++ I++RRRIIL+GTP QNN E ++ +++
Sbjct: 1657 FVVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKE 1709
Score = 176 (67.0 bits), Expect = 1.9e-27, Sum P(3) = 1.9e-27
Identities = 40/107 (37%), Positives = 58/107 (54%)
Query: 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPSS-QARIMLASTKACCEGINLVGASRVVLLD 520
W + +DG + R+ ND ++ + R+ + STKA GINLV A+RV++ D
Sbjct: 2019 WFRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFD 2078
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR-RQARK 566
WNP + Q+I R YR GQ + V VY + T+E DK+ RQ K
Sbjct: 2079 ASWNPSYDIQSIFRVYRFGQSKPVFVYRFLAQGTME-DKIYDRQVTK 2124
Score = 54 (24.1 bits), Expect = 6.6e-09, Sum P(3) = 6.6e-09
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 32 LDDLNSRDSGFDSQTGCDPF--THAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGI 89
LD ++ + G+ + D F + + T L D KK ++G + + +G
Sbjct: 1833 LDYISKENKGYFDEDSMDDFIASDSDETSMSLSSDDYAKKKKSKGKKGKKECSSSGSGSD 1892
Query: 90 -DLDELK--NSTSTGGGNG 105
D++ +K NS S GGG G
Sbjct: 1893 NDVEVIKVWNSRSRGGGEG 1911
Score = 45 (20.9 bits), Expect = 1.9e-27, Sum P(3) = 1.9e-27
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIME--QLRHRFNWREGQEVLYM-DGK 474
F ++ + +KVLVFSQ + L LI + +L +R + + +Y +GK
Sbjct: 1967 FEILRMAEELGDKVLVFSQSLISLDLIEDFLELANREKTDKEKPPIYKGEGK 2018
Score = 42 (19.8 bits), Expect = 5.9e-14, Sum P(2) = 5.9e-14
Identities = 18/91 (19%), Positives = 44/91 (48%)
Query: 406 VDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
V + L+R + E +K R I ++ T +++L+ ++ + L+ +L+ ++N ++
Sbjct: 2311 VQALALSR-QASQELDVKRREA-IYNDVLTKQQMLI--SCVQRI-LMNRRLQQQYNQQQQ 2365
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARI 496
Q + Y N++ +PS+ +I
Sbjct: 2366 QHMSYQQTAMSHLMMPKPPNLIMNPSNYQQI 2396
>ASPGD|ASPL0000027956 [details] [associations]
symbol:AN10677 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005819 "spindle"
evidence=IEA] [GO:0006311 "meiotic gene conversion" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 EMBL:BN001305 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:LSEYFAL
EnsemblFungi:CADANIAT00003558 Uniprot:C8VG87
Length = 833
Score = 238 (88.8 bits), Expect = 2.0e-27, Sum P(3) = 2.0e-27
Identities = 54/152 (35%), Positives = 87/152 (57%)
Query: 427 LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINV 486
+L + TN+K+++ S Y + L L + R R L +DG +VKKRQ ++
Sbjct: 594 MLARIRQDTNDKIVLISNYTQTLDLFEKLCRSR-----AYGCLRLDGTMNVKKRQKLVDK 648
Query: 487 LNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHV 546
NDP + + L S+KA G+NL+GA+R+VL D WNP ++QA++R +R GQK+ V
Sbjct: 649 FNDPDGEEFVFLLSSKAGGCGLNLIGANRLVLFDPDWNPAADQQALARVWRDGQKKDCFV 708
Query: 547 YHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
Y I + ++E +RQ+ K S+ V S++
Sbjct: 709 YRFIATGSIEEKIFQRQSHKQSLSSCVVDSAE 740
Score = 117 (46.2 bits), Expect = 2.0e-27, Sum P(3) = 2.0e-27
Identities = 40/145 (27%), Positives = 61/145 (42%)
Query: 229 LLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
L D P GL + DEGH +N ++ + AL+ + +RR+ILSGTP QN+ E L+
Sbjct: 375 LKDSPIGLLLCDEGHRLKNKESLTWTALNSLNVQRRVILSGTPIQNDLSEYFALLNFANP 434
Query: 288 EFGEVLRTVRKSGR-EISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPFVNVHKGTVL 346
+ RK I K + A+ + + D + F+ +L
Sbjct: 435 DLLGSQNEFRKRFEIPILKGRDAAGTEEDRK----KGDERLAELSSIVNKFIIRRTNDIL 490
Query: 347 QESLPGLRHSVVILQPDEFQKRLCK 371
+ LP VV +FQ L K
Sbjct: 491 SKYLPVKYEHVVFCNLSQFQLDLYK 515
Score = 80 (33.2 bits), Expect = 2.0e-27, Sum P(3) = 2.0e-27
Identities = 35/129 (27%), Positives = 58/129 (44%)
Query: 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLV 122
PR + K + PHQ +F+++ G ID +N+ +GCI++ G GKT +
Sbjct: 237 PR-LAKVLRPHQ---VQFLYRCTTGMID----RNA------HGCIMADGMGLGKTLQCIS 282
Query: 123 FLQAYMKLHPRC------RPVIIAPRSMLLTWEEEFKKW-GIDI--PFY---NLNKPELS 170
+ +K P + +I P S++ W E KW G D PF +K EL+
Sbjct: 283 LMWTLLKQSPEAGKTTIQKCIIACPSSLVGNWANELGKWLGKDTITPFAVDGKASKTELT 342
Query: 171 GKENNGAVA 179
+ A++
Sbjct: 343 SQLKQWAIS 351
Score = 39 (18.8 bits), Expect = 2.2e-19, Sum P(3) = 2.2e-19
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 215 LFEKLVSGDELSGILLDLPGL-FVFDEGHTP 244
+ +KL + +L + DLPG F + + P
Sbjct: 540 ILKKLCNHPDLLNLSTDLPGCEHAFPDDYVP 570
>UNIPROTKB|F1P5M3 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 IPI:IPI00590839
OMA:VCKRHGY EMBL:AADN02024876 EMBL:AADN02024875
Ensembl:ENSGALT00000025712 Uniprot:F1P5M3
Length = 920
Score = 222 (83.2 bits), Expect = 2.1e-27, Sum P(3) = 2.1e-27
Identities = 53/147 (36%), Positives = 83/147 (56%)
Query: 422 IKTRFLLILLELSTNEK--VLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKK 479
+ + L + ELS++E+ V++ S Y + L ++ E + G +DG V +
Sbjct: 653 VLVKLLAAIRELSSSERQVVVLVSNYTQTLNVLQETCKCY-----GYSYTRLDGNTPVSQ 707
Query: 480 RQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLG 539
RQ ++ N S A I L S+KA G+NLVGAS ++L D+ WNP + QA++R +R G
Sbjct: 708 RQQIVDSFNSKFSPAFIFLLSSKAGGVGLNLVGASHLILYDIDWNPATDIQAMARVWRDG 767
Query: 540 QKRVVHVYHLITSETLEWDKLRRQARK 566
QK VH+Y L+T+ T+E +RQ K
Sbjct: 768 QKCTVHIYRLLTTGTIEEKIYQRQISK 794
Score = 118 (46.6 bits), Expect = 2.1e-27, Sum P(3) = 2.1e-27
Identities = 43/163 (26%), Positives = 67/163 (41%)
Query: 208 ILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILS 267
++ +SY + L S D++ I +L + DEGH +N AL+ + RRIIL+
Sbjct: 412 VMIISYEML--LRSLDQIQAIEFNL---LICDEGHRLKNSSIKTTTALTNLSCERRIILT 466
Query: 268 GTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE-ISKAKHASLISSIGRCANHRDDXX 326
GTP QN+ QE + V L T RK E I +++ S R
Sbjct: 467 GTPIQNDLQEFYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSATKEEKDLGEKR---- 522
Query: 327 XXXXXXXIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRL 369
F+ V+ + LP + +++ QP Q L
Sbjct: 523 AAELTRLTGLFILRRTQEVINKFLPPKKENIIFCQPTALQLEL 565
Score = 98 (39.6 bits), Expect = 2.1e-27, Sum P(3) = 2.1e-27
Identities = 29/97 (29%), Positives = 51/97 (52%)
Query: 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT--GLTLVF 123
+ + PHQREG F+++ + G ++ S G G I++ G GKT ++LV+
Sbjct: 299 IANNLRPHQREGIVFLYECVMG------MRVS----GRFGAILADEMGLGKTLQCISLVW 348
Query: 124 LQAYMKLHPRCRPV-----IIAPRSMLLTWEEEFKKW 155
++ C+PV I+ P S++ W++EF+KW
Sbjct: 349 TLLRQGVYG-CKPVLKRALIVTPGSLVKNWKKEFQKW 384
>DICTYBASE|DDB_G0282997 [details] [associations]
symbol:rad54 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282997 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006281
EMBL:AAFI02000049 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K10875 RefSeq:XP_639303.1
ProteinModelPortal:Q54RP8 STRING:Q54RP8 EnsemblProtists:DDB0232369
GeneID:8623874 KEGG:ddi:DDB_G0282997 InParanoid:Q54RP8 OMA:ERPILAG
ProtClustDB:CLSZ2728985 Uniprot:Q54RP8
Length = 931
Score = 210 (79.0 bits), Expect = 2.8e-27, Sum P(3) = 2.8e-27
Identities = 50/169 (29%), Positives = 85/169 (50%)
Query: 425 RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSI 484
R L + + +K ++ S Y + L ++ + R G +DG KRQ +
Sbjct: 624 RLLANIRNSKSGDKTVIISNYTQTLEVLATMCKTR-----GYAYFQLDGSTANAKRQQLV 678
Query: 485 NVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVV 544
N+ NDP+ + L S+KA G+NL+G + +VL D WNP + Q+++R +R GQK++V
Sbjct: 679 NLYNDPARPEFVFLLSSKAGGVGLNLIGGNHLVLFDADWNPANDAQSMARVWREGQKKIV 738
Query: 545 HVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLED 593
+Y T+ T+E +RQ K S + + N + S+ L+D
Sbjct: 739 SIYRTFTTGTIEEKIFQRQLTKQALSTSI--TEGDSDNSPSFDSKDLKD 785
Score = 116 (45.9 bits), Expect = 2.8e-27, Sum P(3) = 2.8e-27
Identities = 40/139 (28%), Positives = 65/139 (46%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGG--GNGCIISHAPGTGKTGLTLVFLQ 125
+K+ PHQREG +F++ + G GG GNGCI++ G GK+ + L
Sbjct: 281 QKLRPHQREGVQFMFDCLLG-----------FRGGFKGNGCILADDMGLGKSIQAITILW 329
Query: 126 AYMKLHPRC-----RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K P+ + VI+AP +++ W +E KKW D +N + G L
Sbjct: 330 TLLKQGPKGESTAKKAVIVAPCTLVGNWGQELKKWLGD----GVNTVAIGESTKTGRAKL 385
Query: 181 MDNRKRGRGKVGLIRYVKL 199
+ + G+ V +I Y +L
Sbjct: 386 TE-LEFGKADVLIISYDQL 403
Score = 112 (44.5 bits), Expect = 2.8e-27, Sum P(3) = 2.8e-27
Identities = 24/52 (46%), Positives = 32/52 (61%)
Query: 234 GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
GL + DEGH +N + KA+S I T RR+ILSGTP QN+ E ++ V
Sbjct: 417 GLVICDEGHRLKNAEIKTTKAVSMIPTARRVILSGTPIQNDLTEFYAMVNFV 468
>FB|FBgn0034976 [details] [associations]
symbol:CG4049 species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 KO:K10876 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 RefSeq:NP_611885.3
UniGene:Dm.15012 ProteinModelPortal:Q9W1A8 SMR:Q9W1A8
MINT:MINT-1613726 EnsemblMetazoa:FBtr0072285 GeneID:37860
KEGG:dme:Dmel_CG4049 UCSC:CG4049-RA FlyBase:FBgn0034976
InParanoid:Q9W1A8 OMA:KCETDLD OrthoDB:EOG4N8PKK PhylomeDB:Q9W1A8
GenomeRNAi:37860 NextBio:805742 Bgee:Q9W1A8 Uniprot:Q9W1A8
Length = 1669
Score = 209 (78.6 bits), Expect = 2.9e-27, Sum P(2) = 2.9e-27
Identities = 57/192 (29%), Positives = 94/192 (48%)
Query: 426 FLLILLE-LSTNEKVLVFSQYIEPLTLIMEQLRHRF----N--WREGQEVLYMDGKQDVK 478
F IL E L+ +++L+FSQ + L L+ L+ + N W + +DG +
Sbjct: 966 FFCILKESLNLGDRILLFSQSLLTLNLLEVYLKSSYVPGSNQLWTKNSSYFRLDGSTSSQ 1025
Query: 479 KRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRL 538
+R+ +N N +S ++ L ST+A GINL GA+RV++ D WNP + QA+ R YR
Sbjct: 1026 ERERLVNEFN-ANSNVKLFLISTRAGSLGINLTGANRVIIFDASWNPCHDTQAVYRIYRY 1084
Query: 539 GQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEE 598
GQ + VY ++ LE RQ +K S+ + D+ L K +
Sbjct: 1085 GQTKPCFVYRIVMDRCLEKKIYDRQIKKQGMSDRIV--------DECNPEAHLSMKDITN 1136
Query: 599 MAQLYNNPSETL 610
+ Q Y++ +T+
Sbjct: 1137 LCQDYDSDEDTV 1148
Score = 190 (71.9 bits), Expect = 2.9e-27, Sum P(2) = 2.9e-27
Identities = 91/336 (27%), Positives = 146/336 (43%)
Query: 53 HAQG--TVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISH 110
H +G T++ L P+ + K + PHQ G F++ NI I+ N +S G GCI++H
Sbjct: 374 HPEGEETLY-LAPQ-IAKVIKPHQIGGVRFLYDNI---IESTRRYNKSS---GFGCILAH 425
Query: 111 APGTGKTGLTLVFLQAYMKLHPRCRPVI-IAPRSMLLTWEEEFKKW----GID--IPFYN 163
+ G GKT + F +++ H + V+ + P + L W EF W D + N
Sbjct: 426 SMGLGKTLQVVSFCDIFLR-HTSAKTVLCVMPINTLQNWLSEFNMWIPRYSTDSNVRPRN 484
Query: 164 LNKPELSGKENN-GAVALMDNRKRGRGKVGLIRY--VKLYSWKM-GTGILGLSYRLFEKL 219
+ L+ ++ A A + G V LI Y +L + K+ T S + +
Sbjct: 485 FDIFVLNDQQKTLTARAKVILNWVHDGGVLLIGYELFRLLALKLVKTRKRKGSVIRPDGM 544
Query: 220 VSGDELSGILLDL---PG--LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNN 274
S +L ++ + PG L + DEGH +N + AL I+TRRRI+L+G P QNN
Sbjct: 545 DSSSDLMNLVYEALVKPGPDLVICDEGHRIKNSHAGISLALKEIRTRRRIVLTGYPLQNN 604
Query: 275 FQELENTLSLVRQEF-GEVLRTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXX 333
E + VR + G R I + + +R
Sbjct: 605 LLEYWCMVDFVRPNYLGTRTEFCNMFERPIQNGQCVDSTPDDIKLMRYR----AHVLHSL 660
Query: 334 IAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRL 369
+ FV TVLQ +LP V++++ FQ++L
Sbjct: 661 LLGFVQRRSHTVLQLTLPQKYEYVILVKMTAFQRKL 696
>CGD|CAL0001568 [details] [associations]
symbol:RAD54 species:5476 "Candida albicans" [GO:0007067
"mitosis" evidence=IMP] [GO:0000085 "G2 phase of mitotic cell
cycle" evidence=IMP] [GO:0006997 "nucleus organization"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0015616 "DNA
translocase activity" evidence=IEA] [GO:0032392 "DNA geometric
change" evidence=IEA] [GO:0000722 "telomere maintenance via
recombination" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0030491 "heteroduplex formation" evidence=IEA]
[GO:0032079 "positive regulation of endodeoxyribonuclease activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001568 GO:GO:0005524
GO:GO:0007067 GO:GO:0003677 GO:GO:0000085 GO:GO:0004386
EMBL:AACQ01000010 EMBL:AACQ01000009 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006997
KO:K10875 RefSeq:XP_722208.1 RefSeq:XP_722322.1
ProteinModelPortal:Q5AKX3 STRING:Q5AKX3 GeneID:3636027
GeneID:3636192 KEGG:cal:CaO19.12471 KEGG:cal:CaO19.5004
Uniprot:Q5AKX3
Length = 848
Score = 242 (90.2 bits), Expect = 4.4e-27, Sum P(2) = 4.4e-27
Identities = 57/152 (37%), Positives = 93/152 (61%)
Query: 422 IKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQ 481
I RFL + T++K+++ S Y + L LI + R++ + G VL +DG ++ KRQ
Sbjct: 609 ILERFLQ-KINKETDDKIVLISNYTQTLDLIEKMCRYK---KYG--VLRLDGTMNINKRQ 662
Query: 482 SSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQK 541
++ NDP+ I L S+KA GINL+GA+R+VL+D WNP ++QA++R +R GQK
Sbjct: 663 KLVDKFNDPNGPEFIFLLSSKAGGCGINLIGANRLVLMDPDWNPASDQQALARVWRDGQK 722
Query: 542 RVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+ +Y I++ T+E +RQ+ K+ S+ V
Sbjct: 723 KDCFIYRFISTGTIEEKIFQRQSMKMSLSSCV 754
Score = 146 (56.5 bits), Expect = 4.4e-27, Sum P(2) = 4.4e-27
Identities = 63/262 (24%), Positives = 113/262 (43%)
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNL 164
GCI++ G GKT L + ++ PR + I + +++ + W +I + L
Sbjct: 281 GCIMADEMGLGKTLQCLTLMWTLLRQSPRGKRTI--EKCIIVCPSSLVRNWANEIVKW-L 337
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLSYRLFEK 218
+ L+ +A+ D + ++G L W G +L +SY +
Sbjct: 338 GEGALT------PLAV-DGKSTKNSELG----TALQQWSTAQGRNIVRPVLIISYETLRR 386
Query: 219 LVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
V D+L+G + GL + DEGH +N D+ F AL+ ++ RR+ILSGTP QN+ E
Sbjct: 387 NV--DKLAGTEV---GLMLADEGHRLKNGDSLTFTALNSLRCERRVILSGTPIQNDLSEY 441
Query: 279 ENTLSLVRQEF-GEVLRTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPF 337
+ L+ + G + + I K + S S R + D ++ F
Sbjct: 442 FSLLNFANPGYLGTRIEFKKNYENAILKGRD-STASDEER---EKGDKKLNELSQMVSKF 497
Query: 338 VNVHKGTVLQESLPGLRHSVVI 359
+ +L + LP +++ V+
Sbjct: 498 IIRRTNDILSKYLP-IKYEYVL 518
Score = 95 (38.5 bits), Expect = 9.3e-22, Sum P(2) = 9.3e-22
Identities = 27/93 (29%), Positives = 42/93 (45%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ G +F+++ AG ID GCI++ G GKT L +
Sbjct: 254 KILRPHQIAGVKFLYRCTAGLID----------ARAKGCIMADEMGLGKTLQCLTLMWTL 303
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKW 155
++ PR + +I+ P S++ W E KW
Sbjct: 304 LRQSPRGKRTIEKCIIVCPSSLVRNWANEIVKW 336
>UNIPROTKB|Q5AKX3 [details] [associations]
symbol:RAD54 "Putative uncharacterized protein RAD54"
species:237561 "Candida albicans SC5314" [GO:0000085 "G2 phase of
mitotic cell cycle" evidence=IMP] [GO:0006997 "nucleus
organization" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001568 GO:GO:0005524 GO:GO:0007067
GO:GO:0003677 GO:GO:0000085 GO:GO:0004386 EMBL:AACQ01000010
EMBL:AACQ01000009 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006997 KO:K10875 RefSeq:XP_722208.1
RefSeq:XP_722322.1 ProteinModelPortal:Q5AKX3 STRING:Q5AKX3
GeneID:3636027 GeneID:3636192 KEGG:cal:CaO19.12471
KEGG:cal:CaO19.5004 Uniprot:Q5AKX3
Length = 848
Score = 242 (90.2 bits), Expect = 4.4e-27, Sum P(2) = 4.4e-27
Identities = 57/152 (37%), Positives = 93/152 (61%)
Query: 422 IKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQ 481
I RFL + T++K+++ S Y + L LI + R++ + G VL +DG ++ KRQ
Sbjct: 609 ILERFLQ-KINKETDDKIVLISNYTQTLDLIEKMCRYK---KYG--VLRLDGTMNINKRQ 662
Query: 482 SSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQK 541
++ NDP+ I L S+KA GINL+GA+R+VL+D WNP ++QA++R +R GQK
Sbjct: 663 KLVDKFNDPNGPEFIFLLSSKAGGCGINLIGANRLVLMDPDWNPASDQQALARVWRDGQK 722
Query: 542 RVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+ +Y I++ T+E +RQ+ K+ S+ V
Sbjct: 723 KDCFIYRFISTGTIEEKIFQRQSMKMSLSSCV 754
Score = 146 (56.5 bits), Expect = 4.4e-27, Sum P(2) = 4.4e-27
Identities = 63/262 (24%), Positives = 113/262 (43%)
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNL 164
GCI++ G GKT L + ++ PR + I + +++ + W +I + L
Sbjct: 281 GCIMADEMGLGKTLQCLTLMWTLLRQSPRGKRTI--EKCIIVCPSSLVRNWANEIVKW-L 337
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLSYRLFEK 218
+ L+ +A+ D + ++G L W G +L +SY +
Sbjct: 338 GEGALT------PLAV-DGKSTKNSELG----TALQQWSTAQGRNIVRPVLIISYETLRR 386
Query: 219 LVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
V D+L+G + GL + DEGH +N D+ F AL+ ++ RR+ILSGTP QN+ E
Sbjct: 387 NV--DKLAGTEV---GLMLADEGHRLKNGDSLTFTALNSLRCERRVILSGTPIQNDLSEY 441
Query: 279 ENTLSLVRQEF-GEVLRTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPF 337
+ L+ + G + + I K + S S R + D ++ F
Sbjct: 442 FSLLNFANPGYLGTRIEFKKNYENAILKGRD-STASDEER---EKGDKKLNELSQMVSKF 497
Query: 338 VNVHKGTVLQESLPGLRHSVVI 359
+ +L + LP +++ V+
Sbjct: 498 IIRRTNDILSKYLP-IKYEYVL 518
Score = 95 (38.5 bits), Expect = 9.3e-22, Sum P(2) = 9.3e-22
Identities = 27/93 (29%), Positives = 42/93 (45%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ G +F+++ AG ID GCI++ G GKT L +
Sbjct: 254 KILRPHQIAGVKFLYRCTAGLID----------ARAKGCIMADEMGLGKTLQCLTLMWTL 303
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKW 155
++ PR + +I+ P S++ W E KW
Sbjct: 304 LRQSPRGKRTIEKCIIVCPSSLVRNWANEIVKW 336
>MGI|MGI:103067 [details] [associations]
symbol:Atrx "alpha thalassemia/mental retardation syndrome
X-linked homolog (human)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000228 "nuclear chromosome"
evidence=IDA] [GO:0000792 "heterochromatin" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0070087 "chromo shadow domain
binding" evidence=ISO] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 MGI:MGI:103067 GO:GO:0005524
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006281
GO:GO:0030900 GO:GO:0003682 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10779
GeneTree:ENSGT00550000074619 CTD:546 HOVERGEN:HBG000104
OrthoDB:EOG4PVNXQ InterPro:IPR025766 PROSITE:PS51533 EMBL:AF026032
EMBL:AL671893 EMBL:AL670660 EMBL:X99643 IPI:IPI00322707
RefSeq:NP_033556.2 UniGene:Mm.10141 ProteinModelPortal:Q61687
SMR:Q61687 IntAct:Q61687 STRING:Q61687 PhosphoSite:Q61687
PaxDb:Q61687 PRIDE:Q61687 Ensembl:ENSMUST00000113573 GeneID:22589
KEGG:mmu:22589 HOGENOM:HOG000231302 InParanoid:A2ADH4
NextBio:302925 Bgee:Q61687 Genevestigator:Q61687
GermOnline:ENSMUSG00000031229 GO:GO:0000792 GO:GO:0000228
Uniprot:Q61687
Length = 2476
Score = 225 (84.3 bits), Expect = 4.6e-27, Sum P(3) = 4.6e-27
Identities = 71/239 (29%), Positives = 115/239 (48%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
V R++ K+ PHQ +G +F+W ++ T G+GCI++H G GKT +
Sbjct: 1537 VHRNMVIKLKPHQVDGVQFMWDCCCESVE------KTKKSPGSGCILAHCMGLGKTLQVV 1590
Query: 122 VFLQAYM---KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV 178
FL + KL +++ P + L W EF+KW LN E K +
Sbjct: 1591 SFLHTVLLCDKLD-FSTALVVCPLNTALNWMNEFEKWQ-----EGLNDNE---KLEVSEL 1641
Query: 179 ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG---------DELSGIL 229
A + KR + + Y+ L W+ G++ + Y ++ L G D + L
Sbjct: 1642 ATV---KRPQER----SYM-LQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKDIFNKAL 1693
Query: 230 LDL-PGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
+D P V DEGH +N+ + + KA++ IK+RRRIIL+GTP QNN E ++ +++
Sbjct: 1694 VDPGPDFVVCDEGHILKNEASAVSKAMNSIKSRRRIILTGTPLQNNLIEYHCMVNFIKE 1752
Score = 180 (68.4 bits), Expect = 4.6e-27, Sum P(3) = 4.6e-27
Identities = 40/107 (37%), Positives = 60/107 (56%)
Query: 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPSS-QARIMLASTKACCEGINLVGASRVVLLD 520
W + +DG + + R+ ND ++ + R+ + STKA GINLV A+RV++ D
Sbjct: 2060 WIRNIDYYRLDGSTNAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFD 2119
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR-RQARK 566
WNP + Q+I R YR GQ + V+VY + T+E DK+ RQ K
Sbjct: 2120 ASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTME-DKIYDRQVTK 2165
Score = 51 (23.0 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 32 LDDLNSRDSGFDSQTGCDPFTHAQGT-VWELVPRDVRKKMFPHQREGFEFIWKNIAGGI- 89
LD ++ + G+ + D F + + + D +KK P ++G + + +G
Sbjct: 1876 LDYISKENKGYFDEDSMDEFIASDSDETSKSLSSDEKKK--PKGKKGKKDSSSSGSGSDN 1933
Query: 90 DLDELK--NSTSTGGGNG 105
D++ +K NS S GGG+G
Sbjct: 1934 DVEVIKVWNSRSRGGGDG 1951
Score = 45 (20.9 bits), Expect = 4.6e-27, Sum P(3) = 4.6e-27
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIME--QLRHRFNWREGQEVLYMDGK 474
F ++ + +KVLVFSQ + L LI + +L R + ++ L G+
Sbjct: 2007 FEILRMAEEIGDKVLVFSQSLISLDLIEDFLELASREKTEDKEKPLIYKGE 2057
Score = 39 (18.8 bits), Expect = 8.5e-08, Sum P(3) = 8.5e-08
Identities = 32/164 (19%), Positives = 62/164 (37%)
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+SG++LS ++ L + +++TC L ++ +I SG N +E
Sbjct: 6 MSGNKLSTLVQKLHDFLAHS---SEESEETCSSPRLVMNQSTDKICGSGL----NSDMME 58
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHR------DDXXXXXXXXX 333
N ++E R SG SK K S+++ + + ++
Sbjct: 59 NN----KEEGASTSEKSRSSGSSRSKRK-PSIVTKYVESDDEKPTDENVNEKAATENSEN 113
Query: 334 IAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVK 377
++ KGTV+ + P L + EF+ R + +K
Sbjct: 114 DITMQSLPKGTVIVQPEPVLNEDKDDFKGPEFRSRSKMKADNLK 157
Score = 37 (18.1 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 166 KPELSGKENNGAVALMDNRKRGRGKV 191
+ E+S ENN + L D+ R +V
Sbjct: 622 REEISDHENNVTILLEDSDLRRSPRV 647
Score = 37 (18.1 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 160 PFYNLNKPELSGKENNGAVALM-DNRKRGRGKVGL 193
P N +K + G E + DN K+ RG+ GL
Sbjct: 131 PVLNEDKDDFKGPEFRSRSKMKADNLKK-RGEDGL 164
>WB|WBGene00006961 [details] [associations]
symbol:xnp-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000003 "reproduction"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0040025 "vulval development" evidence=IMP] [GO:0006915
"apoptotic process" evidence=IMP] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0006915 GO:GO:0008406
GO:GO:0003677 GO:GO:0006281 GO:GO:0040035 GO:GO:0004386
GO:GO:0040025 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AF134186 EMBL:FO080106 PIR:T34036
RefSeq:NP_001020958.1 ProteinModelPortal:Q9U7E0 SMR:Q9U7E0
STRING:Q9U7E0 PaxDb:Q9U7E0 GeneID:172077 KEGG:cel:CELE_B0041.7
UCSC:B0041.7 CTD:172077 WormBase:B0041.7 HOGENOM:HOG000199608
InParanoid:Q9U7E0 KO:K10779 NextBio:873923 Uniprot:Q9U7E0
Length = 1359
Score = 204 (76.9 bits), Expect = 7.8e-27, Sum P(2) = 7.8e-27
Identities = 41/108 (37%), Positives = 64/108 (59%)
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS-QARIMLASTKACCEGINLVGASRVVL 518
++W EG++ + +DG KR + NDP + +AR+ML ST+A G N+V A+RV++
Sbjct: 1008 WSWLEGEDYMTIDGSVQSGKRDAVQTSFNDPLNLRARLMLISTRAGSLGTNMVAANRVII 1067
Query: 519 LDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
D WNP + Q++ R YR GQ + V++Y I T+E +RQ K
Sbjct: 1068 FDACWNPSHDTQSLFRVYRFGQTKPVYIYRFIAQGTMEERIYKRQVTK 1115
Score = 189 (71.6 bits), Expect = 7.8e-27, Sum P(2) = 7.8e-27
Identities = 67/239 (28%), Positives = 109/239 (45%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM--- 128
PHQ G +F++ LD L G+G I++H G GKT + FL +
Sbjct: 465 PHQAHGIQFMYDCACES--LDRLDTE-----GSGGILAHCMGLGKTLQVITFLHTVLMHE 517
Query: 129 KLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG 187
K+ +C+ V ++ P+++++ W +EF+KW +D N EL + N +D+ K
Sbjct: 518 KIGEKCKRVLVVVPKNVIINWFKEFQKWLVD------NDEELDTIDVNE----LDSYKTI 567
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE------------LSGILLDL--- 232
+ R +K + ++ + Y LF L D+ L D
Sbjct: 568 EDRR---RALKAWHSSKTPSVMIIGYDLFRILTVEDDPKKKKPKNRNRRLEKAKEDFRKY 624
Query: 233 ---PG--LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR 286
PG + V DE H +NDD+ + K + +I T+RRI L+GTP QNN E ++ V+
Sbjct: 625 LQNPGPDMVVCDEAHKLKNDDSALSKCMVKILTKRRICLTGTPLQNNLMEYHCMVNFVK 683
Score = 69 (29.3 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 427 LLILLEL-----STNEKVLVFSQYIEPLTLIMEQLRHRFN---W-REGQEVLYMDGKQ 475
L++L+E+ +K+LVFSQ +E LTLI L + W +G E L +G++
Sbjct: 949 LILLVEIIKKCEEIGDKLLVFSQSLESLTLIKRMLEYMAGTGQWFADGHEALNAEGEE 1006
>UNIPROTKB|F1LM36 [details] [associations]
symbol:F1LM36 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 InterPro:IPR025766
PROSITE:PS51533 IPI:IPI00958931 Ensembl:ENSRNOT00000042751
ArrayExpress:F1LM36 Uniprot:F1LM36
Length = 2467
Score = 222 (83.2 bits), Expect = 9.7e-27, Sum P(3) = 9.7e-27
Identities = 69/233 (29%), Positives = 111/233 (47%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
V R++ K+ PHQ +G +F+W + T G+GCI++H G GKT +
Sbjct: 1529 VHRNMVIKLKPHQVDGVQFMWDCCCESV------KKTKKSPGSGCILAHCMGLGKTLQVV 1582
Query: 122 VFLQAYM---KLHPRCRPVIIAPRSMLLTWEEEFKKW--GIDIPFYNLNKPELSGKENNG 176
FL + KL +++ P + L W EF+KW G++ L EL+ +
Sbjct: 1583 SFLHTVLLCDKLD-FSTALVVCPLNTALNWMNEFEKWQEGLN-DAEKLEVSELATVKRPQ 1640
Query: 177 AVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYR-LFEKLVSGDELSGILLDL-PG 234
+ M R + G V +I Y + G + + +F K L+D P
Sbjct: 1641 ERSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKA---------LVDPGPD 1691
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
V DEGH +N+ + + KA++ IK+RRRIIL+GTP QNN E ++ +++
Sbjct: 1692 FVVCDEGHILKNEASAVSKAMNSIKSRRRIILTGTPLQNNLIEYHCMVNFIKE 1744
Score = 181 (68.8 bits), Expect = 9.7e-27, Sum P(3) = 9.7e-27
Identities = 40/107 (37%), Positives = 60/107 (56%)
Query: 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPSS-QARIMLASTKACCEGINLVGASRVVLLD 520
W + +DG + + R+ ND ++ + R+ + STKA GINLV A+RV++ D
Sbjct: 2052 WLRNIDYYRLDGSTNAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFD 2111
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR-RQARK 566
WNP + Q+I R YR GQ + V+VY + T+E DK+ RQ K
Sbjct: 2112 ASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTME-DKIYDRQVTK 2157
Score = 45 (20.9 bits), Expect = 2.1e-08, Sum P(3) = 2.1e-08
Identities = 16/76 (21%), Positives = 31/76 (40%)
Query: 32 LDDLNSRDSGFDSQTGCDPF--THAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGI 89
LD ++ + G+ + D F + + T L + +K R+ +
Sbjct: 1868 LDYISKENKGYFDEDSMDEFIASDSDETSMSLSSDEKKKTKGKKGRKDSSSSGSGSDNDV 1927
Query: 90 DLDELKNSTSTGGGNG 105
++ ++ NS S GGG G
Sbjct: 1928 EVIKVWNSRSRGGGEG 1943
Score = 44 (20.5 bits), Expect = 9.7e-27, Sum P(3) = 9.7e-27
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIMEQL 456
F ++ + +KVLVFSQ + L LI + L
Sbjct: 1999 FEILRMAEEIGDKVLVFSQSLISLDLIEDFL 2029
Score = 37 (18.1 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 342 KGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVK 377
KGTV+ + P L + EF+ R E +K
Sbjct: 122 KGTVIVQPEPVLNEDKDDFKGPEFRSRSKMKTENLK 157
>POMBASE|SPBP35G2.10 [details] [associations]
symbol:mit1 "SHREC complex subunit Mit1" species:4896
"Schizosaccharomyces pombe" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000183 "chromatin silencing at rDNA" evidence=IMP] [GO:0000790
"nuclear chromatin" evidence=IC] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM] [GO:0005524 "ATP binding" evidence=ISM;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005721 "centromeric
heterochromatin" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006342 "chromatin silencing" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0019787 "small conjugating protein
ligase activity" evidence=ISM] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0031933 "telomeric
heterochromatin" evidence=IDA] [GO:0031934 "mating-type region
heterochromatin" evidence=IDA] [GO:0033553 "rDNA heterochromatin"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0070824 "SHREC complex" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00490 PomBase:SPBP35G2.10 Prosite:PS00518 GO:GO:0005524
GO:GO:0044732 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006338 GO:GO:0030466
GO:GO:0000122 GO:GO:0000790 GO:GO:0030702 GO:GO:0000183
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
GO:GO:0005721 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016584 GO:GO:0019787 GO:GO:0033553
GO:GO:0016581 GO:GO:0031933 RefSeq:NP_595385.1
ProteinModelPortal:Q9P793 STRING:Q9P793 EnsemblFungi:SPBP35G2.10.1
GeneID:2541336 KEGG:spo:SPBP35G2.10 OrthoDB:EOG4GQTD1
NextBio:20802445 Uniprot:Q9P793
Length = 1418
Score = 220 (82.5 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
Identities = 60/179 (33%), Positives = 100/179 (55%)
Query: 410 KLARLKLDPEAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQE 467
+LA L+ EA K L +L+ ++ ++L+FSQ+I+ L I+E +W E +
Sbjct: 860 ELAMRSLE-EASCKFLILRLLVPKLITRGHRILLFSQFIQQLD-ILE------DWFEYKN 911
Query: 468 VLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ Y DG +RQS+I+ N P+S+ L ST+A GINL A V++LD +NP
Sbjct: 912 IAYARFDGASSEMERQSAIDSFNAPNSELSCFLLSTRAGGVGINLASADTVIILDPDFNP 971
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQ 584
+ QAI+RA+R GQK+ V V+ L T +++E ++ +K+ +++ S D N +
Sbjct: 972 HQDMQAIARAHRYGQKKKVLVFVLTTRDSVEEKIIQNAQKKLVLDHLIVESLDQNHNSE 1030
Score = 109 (43.4 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNL 164
CI++ G GKT + F+ H +C PV +I P + + WE E KKW PF +
Sbjct: 577 CILADEMGLGKTVQVISFISVLFYRH-KCFPVLVIVPHATVANWERELKKWA---PFLQI 632
Query: 165 NKPELSGKENN 175
N L G E N
Sbjct: 633 NV--LVGSEKN 641
Score = 107 (42.7 bits), Expect = 2.0e-26, Sum P(3) = 2.0e-26
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
+ + DEG +ND + +F LS +K+ +++L+GTP QNN +EL N L +
Sbjct: 685 VLIVDEGQRLKNDQSSLFYYLSSVKSDFKLLLTGTPLQNNVRELFNLLQFL 735
>UNIPROTKB|F1MSA4 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
UniGene:Bt.91076 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 CTD:25788 KO:K10877 GO:GO:0015616
OMA:VCKRHGY EMBL:DAAA02039467 EMBL:DAAA02039466 IPI:IPI00825462
RefSeq:NP_001179884.1 Ensembl:ENSBTAT00000000833 GeneID:533414
KEGG:bta:533414 NextBio:20876031 Uniprot:F1MSA4
Length = 909
Score = 234 (87.4 bits), Expect = 2.7e-26, Sum P(3) = 2.7e-26
Identities = 56/168 (33%), Positives = 88/168 (52%)
Query: 422 IKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQ 481
+ ++ L ++ EL EKV++ S Y L ++ E + R G +DG+ + +RQ
Sbjct: 646 VLSKLLAVIRELRPAEKVVLVSNYTRTLDILQEVCK-----RHGYAYTRLDGQTPISQRQ 700
Query: 482 SSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQK 541
++ N S I L S+KA G+NL+G S ++L D+ WNP + QA+SR +R GQK
Sbjct: 701 QIVDGFNSKYSSDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQK 760
Query: 542 RVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASE 589
VH+Y L+T+ T+E +RQ K S V S + Q + E
Sbjct: 761 HPVHIYRLLTTGTIEEKIYQRQISKQGLSGAVVDLSKTSDHIQFSVEE 808
Score = 107 (42.7 bits), Expect = 2.7e-26, Sum P(3) = 2.7e-26
Identities = 35/106 (33%), Positives = 49/106 (46%)
Query: 208 ILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILS 267
+L +SY + L S D++ + DL + DEGH +N AL + +RIIL+
Sbjct: 405 VLIISYEML--LRSLDQIKNVKFDL---LICDEGHRLKNSTIKTTTALISLSCEKRIILT 459
Query: 268 GTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE---ISKAKHAS 310
GTP QN+ QE + V L RK E IS+ AS
Sbjct: 460 GTPVQNDLQEFFTLIDFVNPGILGSLSAYRKIYEEPIIISRQPSAS 505
Score = 85 (35.0 bits), Expect = 2.7e-26, Sum P(3) = 2.7e-26
Identities = 27/94 (28%), Positives = 48/94 (51%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT--GLTLVF-LQAYM 128
PHQ+EG F+++ + G G G I++ G GKT ++L++ LQ
Sbjct: 298 PHQKEGITFLYECVMG----------MRVNGRCGAILADEMGLGKTLQCISLIWTLQCQG 347
Query: 129 KLHPRC---RPVIIAPRSMLLTWEEEFKKW-GID 158
+ + +I+ P S++ W++EF+KW GI+
Sbjct: 348 PYGGKPIVKKTLIVTPGSLVNNWKKEFQKWLGIE 381
>UNIPROTKB|F1RY50 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:CU633951 Ensembl:ENSSSCT00000006692 Uniprot:F1RY50
Length = 805
Score = 234 (87.4 bits), Expect = 5.1e-26, Sum P(3) = 5.1e-26
Identities = 52/145 (35%), Positives = 82/145 (56%)
Query: 422 IKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQ 481
+ ++ L ++ EL EKV++ S Y + L ++ E R R G +DG+ + +RQ
Sbjct: 542 VLSKLLAVIHELRPAEKVVLVSNYTQTLNILQEVCR-----RHGYGCTRLDGQTPISQRQ 596
Query: 482 SSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQK 541
++ N S I L S+KA G+NL+G S ++L D+ WNP + QA+SR +R GQK
Sbjct: 597 QIVDGFNSKYSSDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQK 656
Query: 542 RVVHVYHLITSETLEWDKLRRQARK 566
VH+Y L+T+ T+E +RQ K
Sbjct: 657 HPVHIYRLLTTGTIEEKIYQRQISK 681
Score = 104 (41.7 bits), Expect = 5.1e-26, Sum P(3) = 5.1e-26
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 208 ILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILS 267
+L +SY + L S D++ I DL + DEGH +N AL + +RIIL+
Sbjct: 301 VLIISYEML--LRSLDQIKNIKFDL---LICDEGHRLKNSAIKTTTALFSLPCEKRIILT 355
Query: 268 GTPFQNNFQELENTLSLV 285
GTP QN+ QE + + V
Sbjct: 356 GTPVQNDLQEFFSLIDFV 373
Score = 83 (34.3 bits), Expect = 5.1e-26, Sum P(3) = 5.1e-26
Identities = 27/90 (30%), Positives = 44/90 (48%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT--GLTLVF-LQA-- 126
PHQREG F+++ + G G G I++ G GKT ++L++ LQ
Sbjct: 194 PHQREGIIFLYECVMG----------MRVNGRCGAILADEMGLGKTLQCISLIWTLQCQG 243
Query: 127 -YMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155
Y + +I+ P S++ W +EF+KW
Sbjct: 244 PYGGKPVIKKTLIVTPGSLVNNWRKEFQKW 273
>UNIPROTKB|K7GSF7 [details] [associations]
symbol:LOC100514440 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 InterPro:IPR025766
PROSITE:PS51533 EMBL:CU928419 EMBL:CU693469 EMBL:CU928840
EMBL:FP102832 Ensembl:ENSSSCT00000036604 Uniprot:K7GSF7
Length = 2372
Score = 216 (81.1 bits), Expect = 6.2e-26, Sum P(3) = 6.2e-26
Identities = 67/232 (28%), Positives = 109/232 (46%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
V R++ K+ PHQ +G +F+W + T G+GCI++H G GKT +
Sbjct: 1507 VHRNMVIKLKPHQVDGVQFMWDCCCESV------KKTKKSPGSGCILAHCMGLGKTLQVV 1560
Query: 122 VFLQAYM---KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF-YNLNKPELSGKENNGA 177
FL + KL +++ P + L W EF+KW + L EL+ +
Sbjct: 1561 SFLHTVLLCDKLD-FSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQE 1619
Query: 178 VALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYR-LFEKLVSGDELSGILLDL-PGL 235
+ M R + G V +I Y + G + + +F K L+D P
Sbjct: 1620 RSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKA---------LVDPGPDF 1670
Query: 236 FVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
V DEGH +N+ + + KA++ I++RRRIIL+GTP QNN E ++ +++
Sbjct: 1671 VVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKE 1722
Score = 179 (68.1 bits), Expect = 6.2e-26, Sum P(3) = 6.2e-26
Identities = 40/107 (37%), Positives = 59/107 (55%)
Query: 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPSS-QARIMLASTKACCEGINLVGASRVVLLD 520
W + +DG + R+ ND ++ + R+ + STKA GINLV A+RV++ D
Sbjct: 2033 WLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFD 2092
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR-RQARK 566
WNP + Q+I R YR GQ + V+VY + T+E DK+ RQ K
Sbjct: 2093 ASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTME-DKIYDRQVTK 2138
Score = 52 (23.4 bits), Expect = 5.9e-09, Sum P(3) = 5.9e-09
Identities = 21/79 (26%), Positives = 35/79 (44%)
Query: 32 LDDLNSRDSGFDSQTGCDPF--THAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGI 89
LD ++ + G+ + D F + + T L D KK + G + + +G
Sbjct: 1846 LDYISKENKGYFDEDSMDEFIASDSDETSMSLSSDDFTKKKKTKGKRGKKDSSSSGSGSD 1905
Query: 90 -DLDELK--NSTSTGGGNG 105
D++ +K NS S GGG G
Sbjct: 1906 NDVEVIKVWNSRSRGGGEG 1924
Score = 44 (20.5 bits), Expect = 6.2e-26, Sum P(3) = 6.2e-26
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIMEQL 456
F ++ + +KVLVFSQ + L LI + L
Sbjct: 1980 FEILRMAEEIGDKVLVFSQSLISLDLIEDFL 2010
>UNIPROTKB|F1MQ85 [details] [associations]
symbol:ATRX "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070087 "chromo shadow domain binding" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
GO:GO:0030900 GO:GO:0003682 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
OMA:GEGKWFR InterPro:IPR025766 PROSITE:PS51533 GO:GO:0000792
GO:GO:0000228 EMBL:DAAA02072507 EMBL:DAAA02072500 EMBL:DAAA02072501
EMBL:DAAA02072502 EMBL:DAAA02072503 EMBL:DAAA02072504
EMBL:DAAA02072505 EMBL:DAAA02072506 IPI:IPI01003328
Ensembl:ENSBTAT00000061308 ArrayExpress:F1MQ85 Uniprot:F1MQ85
Length = 2473
Score = 216 (81.1 bits), Expect = 7.2e-26, Sum P(3) = 7.2e-26
Identities = 67/232 (28%), Positives = 109/232 (46%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
V R++ K+ PHQ +G +F+W + T G+GCI++H G GKT +
Sbjct: 1532 VHRNMVIKLKPHQVDGVQFMWDCCCESV------KKTKKSPGSGCILAHCMGLGKTLQVV 1585
Query: 122 VFLQAYM---KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF-YNLNKPELSGKENNGA 177
FL + KL +++ P + L W EF+KW + L EL+ +
Sbjct: 1586 SFLHTVLLCDKLD-FSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQE 1644
Query: 178 VALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYR-LFEKLVSGDELSGILLDL-PGL 235
+ M R + G V +I Y + G + + +F K L+D P
Sbjct: 1645 RSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKA---------LVDPGPDF 1695
Query: 236 FVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
V DEGH +N+ + + KA++ I++RRRIIL+GTP QNN E ++ +++
Sbjct: 1696 VVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKE 1747
Score = 179 (68.1 bits), Expect = 7.2e-26, Sum P(3) = 7.2e-26
Identities = 40/107 (37%), Positives = 59/107 (55%)
Query: 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPSS-QARIMLASTKACCEGINLVGASRVVLLD 520
W + +DG + R+ ND ++ + R+ + STKA GINLV A+RV++ D
Sbjct: 2058 WLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFD 2117
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR-RQARK 566
WNP + Q+I R YR GQ + V+VY + T+E DK+ RQ K
Sbjct: 2118 ASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTME-DKIYDRQVTK 2163
Score = 53 (23.7 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 32 LDDLNSRDSGFDSQTGCDPF--THAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGI 89
LD ++ + G+ + D F + + T L D KK ++G + + +G
Sbjct: 1871 LDYISKENKGYFDEDSMDEFIASDSDETSMSLSSDDYTKKKKAKGKKGKKDSSSSGSGSD 1930
Query: 90 -DLDELK--NSTSTGGGNG 105
D++ +K NS S GGG G
Sbjct: 1931 NDVEVIKVWNSRSRGGGEG 1949
Score = 46 (21.3 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 19/99 (19%), Positives = 49/99 (49%)
Query: 402 ESFDVDSAKLARLKLDPEAG----IKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLR 457
E+ ++ A++ L L +A +K R I ++ T +++L+ ++ + L+ +L+
Sbjct: 2341 ENMNLSEAQVQALALSRQASQELDVKRREA-IYNDVLTKQQMLI--SCVQRI-LMNRRLQ 2396
Query: 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI 496
++N ++ Q++ Y N++ +PS+ +I
Sbjct: 2397 QQYNQQQQQQMTYQQATLGHLMMPKPPNLIMNPSNYQQI 2435
Score = 44 (20.5 bits), Expect = 7.2e-26, Sum P(3) = 7.2e-26
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIMEQL 456
F ++ + +KVLVFSQ + L LI + L
Sbjct: 2005 FEILRMAEEIGDKVLVFSQSLISLDLIEDFL 2035
Score = 38 (18.4 bits), Expect = 1.7e-07, Sum P(3) = 1.7e-07
Identities = 25/112 (22%), Positives = 42/112 (37%)
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHR-------DDX 325
NN +EN+ R+E + SG SK K S+++ + + +D
Sbjct: 47 NNSDMMENS----REEGASSAEKSKSSGSSRSKRK-PSIVTKYVESDDEKTLDETVNEDA 101
Query: 326 XXXXXXXXIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVK 377
I ++ KGTV+ + P L + EF+ R E +K
Sbjct: 102 SNENSENDIT-MQSLPKGTVIVQPEPVLNEDKDDFKGPEFRSRSKMKTENLK 152
>UNIPROTKB|F1PKC1 [details] [associations]
symbol:ATRX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00184
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K10779 GeneTree:ENSGT00550000074619 CTD:546
OMA:GEGKWFR InterPro:IPR025766 PROSITE:PS51533 EMBL:AAEX03026550
EMBL:AAEX03026551 EMBL:AAEX03026552 EMBL:AAEX03026553
EMBL:AAEX03026554 EMBL:AAEX03026555 EMBL:AAEX03026556
RefSeq:XP_538084.2 Ensembl:ENSCAFT00000027324 GeneID:480963
KEGG:cfa:480963 Uniprot:F1PKC1
Length = 2489
Score = 216 (81.1 bits), Expect = 7.3e-26, Sum P(3) = 7.3e-26
Identities = 67/232 (28%), Positives = 109/232 (46%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
V R++ K+ PHQ +G +F+W + T G+GCI++H G GKT +
Sbjct: 1548 VHRNMVIKLKPHQVDGVQFMWDCCCESV------KKTKKSPGSGCILAHCMGLGKTLQVV 1601
Query: 122 VFLQAYM---KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF-YNLNKPELSGKENNGA 177
FL + KL +++ P + L W EF+KW + L EL+ +
Sbjct: 1602 SFLHTVLLCDKLD-FSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQE 1660
Query: 178 VALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYR-LFEKLVSGDELSGILLDL-PGL 235
+ M R + G V +I Y + G + + +F K L+D P
Sbjct: 1661 RSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKA---------LVDPGPDF 1711
Query: 236 FVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
V DEGH +N+ + + KA++ I++RRRIIL+GTP QNN E ++ +++
Sbjct: 1712 VVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKE 1763
Score = 179 (68.1 bits), Expect = 7.3e-26, Sum P(3) = 7.3e-26
Identities = 40/107 (37%), Positives = 59/107 (55%)
Query: 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPSS-QARIMLASTKACCEGINLVGASRVVLLD 520
W + +DG + R+ ND ++ + R+ + STKA GINLV A+RV++ D
Sbjct: 2074 WLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFD 2133
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR-RQARK 566
WNP + Q+I R YR GQ + V+VY + T+E DK+ RQ K
Sbjct: 2134 ASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTME-DKIYDRQVTK 2179
Score = 53 (23.7 bits), Expect = 5.4e-09, Sum P(3) = 5.4e-09
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 32 LDDLNSRDSGFDSQTGCDPF--THAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGI 89
LD ++ + G+ + D F + + T L D KK ++G + + +G
Sbjct: 1887 LDYISKENKGYFDEDSMDEFIASDSDETSMSLSSDDYAKKKKTKGKKGKKDSSSSGSGSD 1946
Query: 90 -DLDELK--NSTSTGGGNG 105
D++ +K NS S GGG G
Sbjct: 1947 NDVEVIKVWNSRSRGGGEG 1965
Score = 46 (21.3 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 19/99 (19%), Positives = 49/99 (49%)
Query: 402 ESFDVDSAKLARLKLDPEAG----IKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLR 457
E+ ++ A++ L L +A +K R I ++ T +++L+ ++ + L+ +L+
Sbjct: 2357 ENMNLSEAQVQALALSRQASQELDVKRREA-IYNDVLTKQQMLI--SCVQRI-LMNRRLQ 2412
Query: 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI 496
++N ++ Q++ Y N++ +PS+ +I
Sbjct: 2413 QQYNQQQQQQMTYQQATLGHLMMPKPPNLIMNPSNYQQI 2451
Score = 44 (20.5 bits), Expect = 7.3e-26, Sum P(3) = 7.3e-26
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIMEQL 456
F ++ + +KVLVFSQ + L LI + L
Sbjct: 2021 FEILRMAEEIGDKVLVFSQSLISLDLIEDFL 2051
Score = 37 (18.1 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 342 KGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVK 377
KGTV+ + P L + EF+ R E +K
Sbjct: 122 KGTVIVQPEPVLNEDKDDFKGPEFRSRSKMKTENLK 157
>UNIPROTKB|P46100 [details] [associations]
symbol:ATRX "Transcriptional regulator ATRX" species:9606
"Homo sapiens" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0030900 "forebrain
development" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=TAS] [GO:0004386 "helicase activity" evidence=TAS]
[GO:0005634 "nucleus" evidence=TAS] [GO:0005720 "nuclear
heterochromatin" evidence=TAS] [GO:0006306 "DNA methylation"
evidence=TAS] [GO:0006310 "DNA recombination" evidence=TAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0070087 "chromo shadow domain binding" evidence=IPI]
[GO:0032508 "DNA duplex unwinding" evidence=TAS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 GO:GO:0005720 GO:GO:0030900 GO:GO:0003682
GO:GO:0006310 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0006306 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
DrugBank:DB00144 EMBL:CH471104 KO:K10779 EMBL:U72937 EMBL:U72938
EMBL:U72935 EMBL:U72904 EMBL:U72905 EMBL:U72907 EMBL:U72908
EMBL:U72909 EMBL:U72910 EMBL:U72911 EMBL:U72912 EMBL:U72913
EMBL:U72914 EMBL:U72915 EMBL:U72916 EMBL:U72917 EMBL:U72918
EMBL:U72919 EMBL:U72920 EMBL:U72921 EMBL:U72922 EMBL:U72923
EMBL:U72924 EMBL:U72925 EMBL:U72926 EMBL:U72927 EMBL:U72928
EMBL:U72929 EMBL:U72930 EMBL:U72931 EMBL:U72932 EMBL:U72933
EMBL:U72934 EMBL:U72936 EMBL:U75653 EMBL:U97103 EMBL:AF000157
EMBL:AF000158 EMBL:AF000159 EMBL:AF000160 EMBL:U97080 EMBL:U97081
EMBL:U97082 EMBL:U97083 EMBL:U97084 EMBL:U97085 EMBL:U97086
EMBL:U97087 EMBL:U97088 EMBL:U97089 EMBL:U97090 EMBL:U97091
EMBL:U97092 EMBL:U97093 EMBL:U97094 EMBL:U97095 EMBL:U97096
EMBL:U97097 EMBL:U97098 EMBL:U97099 EMBL:U97100 EMBL:U97101
EMBL:U97102 EMBL:AB102641 EMBL:AB101681 EMBL:AB101682 EMBL:AB101683
EMBL:AB101685 EMBL:AB101687 EMBL:AB101689 EMBL:AB101691
EMBL:AB101693 EMBL:AB101695 EMBL:AB101700 EMBL:AB101699
EMBL:AB101698 EMBL:AB101697 EMBL:AB101696 EMBL:AB101694
EMBL:AB101692 EMBL:AB101690 EMBL:AB101688 EMBL:AB101686
EMBL:AB101684 EMBL:AB208928 EMBL:AB209545 EMBL:AL121874
EMBL:AL109753 EMBL:Z84487 EMBL:U09820 EMBL:L34363 EMBL:X83753
IPI:IPI00220109 IPI:IPI00297633 IPI:IPI00845355 IPI:IPI00883721
IPI:IPI00938010 IPI:IPI00940810 PIR:I38614 PIR:I54367
RefSeq:NP_000480.2 RefSeq:NP_612114.1 UniGene:Hs.533526
UniGene:Hs.653797 PDB:2JM1 PDB:2LBM PDB:2LD1 PDB:3QL9 PDB:3QLA
PDB:3QLC PDB:3QLN PDBsum:2JM1 PDBsum:2LBM PDBsum:2LD1 PDBsum:3QL9
PDBsum:3QLA PDBsum:3QLC PDBsum:3QLN ProteinModelPortal:P46100
SMR:P46100 DIP:DIP-31532N IntAct:P46100 MINT:MINT-1186201
STRING:P46100 PhosphoSite:P46100 DMDM:311033500 PaxDb:P46100
PRIDE:P46100 DNASU:546 Ensembl:ENST00000373344
Ensembl:ENST00000395603 GeneID:546 KEGG:hsa:546 UCSC:uc004eco.4
UCSC:uc004ecq.4 UCSC:uc004ecr.2 CTD:546 GeneCards:GC0XM076760
H-InvDB:HIX0176765 HGNC:HGNC:886 HPA:CAB009372 HPA:HPA001906
MIM:300032 MIM:300448 MIM:301040 MIM:309580 neXtProt:NX_P46100
Orphanet:847 Orphanet:231401 Orphanet:93973 Orphanet:93971
Orphanet:93970 Orphanet:93972 Orphanet:93974 Orphanet:3423
PharmGKB:PA25179 HOVERGEN:HBG000104 InParanoid:P46100 OMA:GEGKWFR
OrthoDB:EOG4PVNXQ PhylomeDB:P46100 EvolutionaryTrace:P46100
GenomeRNAi:546 NextBio:2259 ArrayExpress:P46100 Bgee:P46100
CleanEx:HS_RAD54L Genevestigator:P46100 GermOnline:ENSG00000085224
InterPro:IPR025766 PROSITE:PS51533 Uniprot:P46100
Length = 2492
Score = 216 (81.1 bits), Expect = 7.3e-26, Sum P(3) = 7.3e-26
Identities = 67/232 (28%), Positives = 109/232 (46%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
V R++ K+ PHQ +G +F+W + T G+GCI++H G GKT +
Sbjct: 1552 VHRNMVIKLKPHQVDGVQFMWDCCCESV------KKTKKSPGSGCILAHCMGLGKTLQVV 1605
Query: 122 VFLQAYM---KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF-YNLNKPELSGKENNGA 177
FL + KL +++ P + L W EF+KW + L EL+ +
Sbjct: 1606 SFLHTVLLCDKLD-FSTALVVCPLNTALNWMNEFEKWQEGLKDDEKLEVSELATVKRPQE 1664
Query: 178 VALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYR-LFEKLVSGDELSGILLDL-PGL 235
+ M R + G V +I Y + G + + +F K L+D P
Sbjct: 1665 RSYMLQRWQEDGGVMIIGYEMYRNLAQGRNVKSRKLKEIFNKA---------LVDPGPDF 1715
Query: 236 FVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
V DEGH +N+ + + KA++ I++RRRIIL+GTP QNN E ++ +++
Sbjct: 1716 VVCDEGHILKNEASAVSKAMNSIRSRRRIILTGTPLQNNLIEYHCMVNFIKE 1767
Score = 179 (68.1 bits), Expect = 7.3e-26, Sum P(3) = 7.3e-26
Identities = 40/107 (37%), Positives = 59/107 (55%)
Query: 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPSS-QARIMLASTKACCEGINLVGASRVVLLD 520
W + +DG + R+ ND ++ + R+ + STKA GINLV A+RV++ D
Sbjct: 2077 WLRNIDYYRLDGSTTAQSRKKWAEEFNDETNVRGRLFIISTKAGSLGINLVAANRVIIFD 2136
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR-RQARK 566
WNP + Q+I R YR GQ + V+VY + T+E DK+ RQ K
Sbjct: 2137 ASWNPSYDIQSIFRVYRFGQTKPVYVYRFLAQGTME-DKIYDRQVTK 2182
Score = 48 (22.0 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 32 LDDLNSRDSGFDSQTGCDPF--THAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGI 89
LD ++ + G+ + D F + + T L D KK ++ +
Sbjct: 1891 LDYISKENKGYFDEDSMDEFIASDSDETSMSLSSDDYTKKKKKGKKGKKDSSSSGSGSDN 1950
Query: 90 DLDELK--NSTSTGGGNG 105
D++ +K NS S GGG G
Sbjct: 1951 DVEVIKVWNSRSRGGGEG 1968
Score = 46 (21.3 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 19/99 (19%), Positives = 49/99 (49%)
Query: 402 ESFDVDSAKLARLKLDPEAG----IKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLR 457
E+ ++ A++ L L +A +K R I ++ T +++L+ ++ + L+ +L+
Sbjct: 2360 ENMNLSEAQVQALALSRQASQELDVKRREA-IYNDVLTKQQMLI--SCVQRI-LMNRRLQ 2415
Query: 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI 496
++N ++ Q++ Y N++ +PS+ +I
Sbjct: 2416 QQYNQQQQQQMTYQQATLGHLMMPKPPNLIMNPSNYQQI 2454
Score = 44 (20.5 bits), Expect = 7.3e-26, Sum P(3) = 7.3e-26
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIMEQL 456
F ++ + +KVLVFSQ + L LI + L
Sbjct: 2024 FEILRMAEEIGDKVLVFSQSLISLDLIEDFL 2054
Score = 40 (19.1 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 25/109 (22%), Positives = 42/109 (38%)
Query: 100 TGGGNGCIISHAPGTGKTGLTLVF-LQAYMKL--HPRCRPVIIAPRSMLLTWEE----EF 152
TG GN S G GK G L Q ++ HP C + + ++E EF
Sbjct: 1855 TGVGNN---SEG-GRGKAGAKLFQDFQMLSRIWTHPWCLQLDYISKENKGYFDEDSMDEF 1910
Query: 153 KKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYS 201
D +L+ + + K+ G D+ G G + +K+++
Sbjct: 1911 IASDSDETSMSLSSDDYTKKKKKGKKGKKDSSSSGSGSDNDVEVIKVWN 1959
Score = 37 (18.1 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 342 KGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVK 377
KGTV+ + P L + EF+ R E +K
Sbjct: 123 KGTVIVQPEPVLNEDKDDFKGPEFRSRSKMKTENLK 158
>UNIPROTKB|F1PW14 [details] [associations]
symbol:RAD54B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0015616 "DNA translocase activity"
evidence=IEA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 OMA:VCKRHGY
EMBL:AAEX03015957 Ensembl:ENSCAFT00000014598 Uniprot:F1PW14
Length = 912
Score = 238 (88.8 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 71/211 (33%), Positives = 105/211 (49%)
Query: 398 QQFFESF-DVDSAKLARLKLDPEAGIKTRFLLILL----ELSTNEKVLVFSQYIEPLTLI 452
+ +E+ DV A L E K + LL LL EL EKV++ S Y + L ++
Sbjct: 618 KSLYEALLDVFPADYNPLMFSEEESGKLQVLLKLLAVIHELRPTEKVVLVSNYTQTLDIL 677
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
E + R G +DG+ V +RQ ++ N S I L S+KA G+NL+G
Sbjct: 678 QEVCK-----RHGYTYTRLDGQTPVSQRQQIVDSFNSKYSSDFIFLLSSKAGGVGLNLIG 732
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNM 572
S ++L D+ WNP + QA+SR +R GQK VH+Y L+T+ T+E +RQ K S
Sbjct: 733 GSHLILYDIDWNPATDIQAMSRVWRDGQKNPVHIYRLLTTGTIEEKIYQRQISKQDLSGA 792
Query: 573 VFPSSDGGGNDQTTASEPLEDKILEEMAQLY 603
V D T SE ++ + EE+ L+
Sbjct: 793 VV--------DLTRTSEHIQFSV-EELKNLF 814
Score = 101 (40.6 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 34/106 (32%), Positives = 49/106 (46%)
Query: 208 ILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILS 267
+L +SY + L S D++ + GL + DEGH +N AL + +R+IL+
Sbjct: 406 VLIISYEML--LRSLDQIKNVKF---GLLICDEGHRLKNSAIKTTAALISLSCEKRVILT 460
Query: 268 GTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE---ISKAKHAS 310
GTP QN+ QE + V L RK E IS+ AS
Sbjct: 461 GTPVQNDLQEFFALIDFVNPGILGSLSFYRKVYEEPIIISRQPSAS 506
Score = 81 (33.6 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 26/90 (28%), Positives = 44/90 (48%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT--GLTLVF-LQA-- 126
PHQ+EG F+++ + G G G I++ G GKT ++L++ LQ
Sbjct: 299 PHQKEGIMFLYECVMG----------MRVNGRCGAILADEMGLGKTLQCISLIWTLQCQG 348
Query: 127 -YMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155
Y + +I+ P S++ W +EF+KW
Sbjct: 349 PYGGKPVVKKTLIVTPGSLVNNWRKEFQKW 378
>UNIPROTKB|Q9Y620 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=TAS] [GO:0006312 "mitotic recombination"
evidence=TAS] [GO:0007131 "reciprocal meiotic recombination"
evidence=TAS] [GO:0003724 "RNA helicase activity" evidence=TAS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IDA] [GO:0015616 "DNA translocase activity"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=TAS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0000724 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0006312 GO:GO:0007131
GO:GO:0003724 EMBL:AC023632 UniGene:Hs.30561 UniGene:Hs.657457
GeneID:25788 KEGG:hsa:25788 CTD:25788 KO:K10877 NextBio:46945
GO:GO:0015616 HOGENOM:HOG000204521 HOVERGEN:HBG058654
OrthoDB:EOG4SBDX5 EMBL:AF112481 EMBL:AL523600 EMBL:AP003534
EMBL:BC001965 IPI:IPI00018281 IPI:IPI00797041 RefSeq:NP_001192192.1
RefSeq:NP_036547.1 ProteinModelPortal:Q9Y620 SMR:Q9Y620
IntAct:Q9Y620 MINT:MINT-1441930 STRING:Q9Y620 PhosphoSite:Q9Y620
DMDM:51316548 PaxDb:Q9Y620 PRIDE:Q9Y620 Ensembl:ENST00000297592
Ensembl:ENST00000336148 UCSC:uc003ygk.3 GeneCards:GC08M095384
HGNC:HGNC:17228 HPA:HPA007087 MIM:604289 neXtProt:NX_Q9Y620
PharmGKB:PA134927202 InParanoid:Q9Y620 OMA:VCKRHGY PhylomeDB:Q9Y620
ChiTaRS:RAD54B GenomeRNAi:25788 ArrayExpress:Q9Y620 Bgee:Q9Y620
CleanEx:HS_RAD54B Genevestigator:Q9Y620 GermOnline:ENSG00000197275
Uniprot:Q9Y620
Length = 910
Score = 235 (87.8 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 65/214 (30%), Positives = 109/214 (50%)
Query: 422 IKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQ 481
+ ++ L ++ EL EKV++ S Y + L ++ E + R G +DG+ + +RQ
Sbjct: 646 VLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCK-----RHGYAYTRLDGQTPISQRQ 700
Query: 482 SSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQK 541
++ N S I L S+KA G+NL+G S ++L D+ WNP + QA+SR +R GQK
Sbjct: 701 QIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQK 760
Query: 542 RVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQ 601
VH+Y L+T+ T+E +RQ K V D T SE ++ + EE+
Sbjct: 761 YPVHIYRLLTTGTIEEKIYQRQISKQGLCGAVV--------DLTKTSEHIQFSV-EELKN 811
Query: 602 LY--NNPSETLINAIIPQPKETELIETFGEFLNK 633
L+ + S+ + + ++ E + T G+ L K
Sbjct: 812 LFTLHESSDCVTHDLLDCECTGEEVHT-GDSLEK 844
Score = 105 (42.0 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 31/91 (34%), Positives = 44/91 (48%)
Query: 208 ILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILS 267
+L +SY + L S D++ I DL + DEGH +N AL + +RIIL+
Sbjct: 405 VLIISYEML--LRSLDQIKNIKFDL---LICDEGHRLKNSAIKTTTALISLSCEKRIILT 459
Query: 268 GTPFQNNFQELENTLSLVRQEFGEVLRTVRK 298
GTP QN+ QE + V L + RK
Sbjct: 460 GTPIQNDLQEFFALIDFVNPGILGSLSSYRK 490
Score = 80 (33.2 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 26/90 (28%), Positives = 45/90 (50%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT--GLTLVF-LQA-- 126
PHQ+EG F+++ + G G G I++ G GKT ++L++ LQ
Sbjct: 298 PHQKEGIIFLYECVMG----------MRMNGRCGAILADEMGLGKTLQCISLIWTLQCQG 347
Query: 127 -YMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155
Y + +I+ P S++ W++EF+KW
Sbjct: 348 PYGGKPVIKKTLIVTPGSLVNNWKKEFQKW 377
>WB|WBGene00002637 [details] [associations]
symbol:let-418 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0048557 "embryonic digestive tract
morphogenesis" evidence=IGI] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0008134 "transcription
factor binding" evidence=IPI] [GO:0016581 "NuRD complex"
evidence=ISS] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 209 (78.6 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 60/168 (35%), Positives = 89/168 (52%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ L IME L EG +DG + RQ +I+ N P +Q I
Sbjct: 944 RVLIFSQMTRMLD-IMEDLCEY----EGYRYERIDGSIMGQMRQDAIDRYNAPGAQQFIF 998
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L ST+A GINL A V++ D WNP + QA SRA+RLGQK V +Y +T +++E
Sbjct: 999 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKKSVE- 1057
Query: 558 DKLRRQARKVWWSN-MVFPSSDGGGNDQTTASEPLEDKILEEMAQLYN 604
+K+ A+K N +V + GG +T + L+D + +L++
Sbjct: 1058 EKITSVAKKKMLLNHLVVRAGLGGKEGKTMSKTELDDVLRWGTEELFS 1105
Score = 175 (66.7 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 59/209 (28%), Positives = 98/209 (46%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR-PVIIA-PRSMLLTWEEEFKKWGID-- 158
G I++ G GKT +L FL + MK C+ P +IA P S ++ WE E ++W D
Sbjct: 620 GTDAILADEMGLGKTVQSLTFLYSLMK-EGHCKGPFLIAAPLSTIINWEREAEQWCPDFY 678
Query: 159 -IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFE 217
+ + L + +E+ + ++ R K ++ + M +L SY
Sbjct: 679 VVTYVGLRDARVVLREHE--FSFVEGAVRSGPKASKMKTTE----NMKFHVLLTSY---- 728
Query: 218 KLVSGDELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQ 276
+ ++ D+ IL + G V DE H +N+ + FK L+ R++L+GTP QNN +
Sbjct: 729 ETINMDKT--ILSSIEWGALVVDEAHRLKNNQSLFFKNLNEYTIHYRVLLTGTPLQNNLE 786
Query: 277 ELENTLSLVRQEFGEVLRTVRKSGREISK 305
EL + L+ + +E L EISK
Sbjct: 787 ELFHLLNFLSKERFNQLEAFTAEFNEISK 815
Score = 37 (18.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 337 FVNVHKGTVLQESLPGLRHSVVILQPD 363
F + + V++E L H+ LQPD
Sbjct: 1589 FKLIEQSLVIEEQLRRAAHANRHLQPD 1615
>UNIPROTKB|G5EBZ4 [details] [associations]
symbol:let-418 "Protein let-418" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 209 (78.6 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 60/168 (35%), Positives = 89/168 (52%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ L IME L EG +DG + RQ +I+ N P +Q I
Sbjct: 944 RVLIFSQMTRMLD-IMEDLCEY----EGYRYERIDGSIMGQMRQDAIDRYNAPGAQQFIF 998
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L ST+A GINL A V++ D WNP + QA SRA+RLGQK V +Y +T +++E
Sbjct: 999 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKKSVE- 1057
Query: 558 DKLRRQARKVWWSN-MVFPSSDGGGNDQTTASEPLEDKILEEMAQLYN 604
+K+ A+K N +V + GG +T + L+D + +L++
Sbjct: 1058 EKITSVAKKKMLLNHLVVRAGLGGKEGKTMSKTELDDVLRWGTEELFS 1105
Score = 175 (66.7 bits), Expect = 1.3e-25, Sum P(2) = 1.3e-25
Identities = 59/209 (28%), Positives = 98/209 (46%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR-PVIIA-PRSMLLTWEEEFKKWGID-- 158
G I++ G GKT +L FL + MK C+ P +IA P S ++ WE E ++W D
Sbjct: 620 GTDAILADEMGLGKTVQSLTFLYSLMK-EGHCKGPFLIAAPLSTIINWEREAEQWCPDFY 678
Query: 159 -IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFE 217
+ + L + +E+ + ++ R K ++ + M +L SY
Sbjct: 679 VVTYVGLRDARVVLREHE--FSFVEGAVRSGPKASKMKTTE----NMKFHVLLTSY---- 728
Query: 218 KLVSGDELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQ 276
+ ++ D+ IL + G V DE H +N+ + FK L+ R++L+GTP QNN +
Sbjct: 729 ETINMDKT--ILSSIEWGALVVDEAHRLKNNQSLFFKNLNEYTIHYRVLLTGTPLQNNLE 786
Query: 277 ELENTLSLVRQEFGEVLRTVRKSGREISK 305
EL + L+ + +E L EISK
Sbjct: 787 ELFHLLNFLSKERFNQLEAFTAEFNEISK 815
Score = 37 (18.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 337 FVNVHKGTVLQESLPGLRHSVVILQPD 363
F + + V++E L H+ LQPD
Sbjct: 1589 FKLIEQSLVIEEQLRRAAHANRHLQPD 1615
>CGD|CAL0004359 [details] [associations]
symbol:RDH54 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0015616 "DNA translocase activity" evidence=IEA] [GO:0032392
"DNA geometric change" evidence=IEA] [GO:0045144 "meiotic sister
chromatid segregation" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IEA] [GO:0030491 "heteroduplex
formation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004359 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000059 EMBL:AACQ01000058 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10877
RefSeq:XP_717090.1 RefSeq:XP_717169.1 ProteinModelPortal:Q5A5N2
STRING:Q5A5N2 GeneID:3641231 GeneID:3641299 KEGG:cal:CaO19.12827
KEGG:cal:CaO19.5367 Uniprot:Q5A5N2
Length = 796
Score = 257 (95.5 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 99/401 (24%), Positives = 172/401 (42%)
Query: 216 FEKLVSG-DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNN 274
+EKLV+ DELS + DL V DEGH +N + L ++ ++I+L+GTP QN
Sbjct: 315 YEKLVAHFDELSAVKFDL---LVCDEGHRLKNSANKVLNNLIKLNIPKKIVLTGTPIQNE 371
Query: 275 FQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXI 334
E +S + L+ +++ I+ A I+ R +
Sbjct: 372 LVEFHTLISFLNPGVLPELKLFQRNF--ITPISRARDINCFDPEVKKRGEEISQQLIELT 429
Query: 335 APFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCXXXXXXXXX 394
F+ +L L ++ + P Q +L + +K F +
Sbjct: 430 QSFILRRTQAILANYLTQKTDILLFVPPTSLQLKLFDYITNLKKFNQFEAFTMINLFKKI 489
Query: 395 XXXQQFFESFDVDSAKLARLKLD-PEAGIKTRFLL-ILLEL-STNEKVLVFSQYIEPLTL 451
++ K+ K + A K L+ +LLE+ S EK+++ S Y + L L
Sbjct: 490 CNSPSLLADDELFK-KIVEEKFNLGMASGKINILVPLLLEIASLGEKIVLISNYTKTLDL 548
Query: 452 IMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLV 511
+ + LR + +DG R +N N + + L S+K+ GINLV
Sbjct: 549 LEQVLR-----KVSLTFSRLDGSTPNNVRSKLVNQFNT-NPDINVFLLSSKSGGMGINLV 602
Query: 512 GASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSN 571
GASR++L D WNP + Q++SR +R GQ + +Y L T+ ++ +RQ K N
Sbjct: 603 GASRLILFDNDWNPATDLQSMSRIHRDGQLKPCFIYRLFTTGCIDEKIFQRQLVK----N 658
Query: 572 MVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSETLIN 612
+ SS ND T+ S+ ++ +++ ++ + T+ N
Sbjct: 659 KL--SSKFLDNDATSKSDVFDN---DDLKNIFEIDTSTISN 694
Score = 112 (44.5 bits), Expect = 2.7e-25, Sum P(2) = 2.7e-25
Identities = 30/116 (25%), Positives = 59/116 (50%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ EG +F+++ + G GG+GC+++ G GKT +T+ +
Sbjct: 193 KVLRPHQVEGVKFMYECLMGYRGF----------GGHGCLLADEMGLGKTLMTITTIWTL 242
Query: 128 MKLHPRC-------RPVIIAPRSMLLTWEEEFKKW-GID-IPFYNLNKPELSGKEN 174
+K +P + +++ P +++ W +EF+KW G + + LN P + K++
Sbjct: 243 LKQNPFMEKGAVVNKVLVVCPVTLISNWRQEFRKWLGANKLNVLTLNNPMSNEKQD 298
>MGI|MGI:894697 [details] [associations]
symbol:Rad54l "RAD54 like (S. cerevisiae)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IGI] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0010212 "response to ionizing radiation"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0042493 "response to drug" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IGI]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 MGI:MGI:894697 GO:GO:0005524 GO:GO:0005634
GO:GO:0042493 GO:GO:0003677 GO:GO:0010212 GO:GO:0000724
GO:GO:0004386 GO:GO:0051276 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074619
GO:GO:0036310 UniGene:Mm.3655 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:X97796 EMBL:AK088876 EMBL:BC021643 IPI:IPI00404187
RefSeq:NP_001116430.1 RefSeq:NP_001116431.1 RefSeq:NP_033041.3
ProteinModelPortal:P70270 SMR:P70270 STRING:P70270
PhosphoSite:P70270 PRIDE:P70270 Ensembl:ENSMUST00000102704
Ensembl:ENSMUST00000102705 GeneID:19366 KEGG:mmu:19366
InParanoid:P70270 NextBio:296441 Bgee:P70270 CleanEx:MM_RAD54L
Genevestigator:P70270 GermOnline:ENSMUSG00000028702 Uniprot:P70270
Length = 747
Score = 215 (80.7 bits), Expect = 4.2e-25, Sum P(2) = 4.2e-25
Identities = 50/150 (33%), Positives = 86/150 (57%)
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSS 483
++L + +++KV++ S Y + L L + R R LY +DG +KKR
Sbjct: 503 YILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRVR-------RYLYVRLDGTMSIKKRAKV 555
Query: 484 INVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRV 543
+ N PSS + + S+KA G+NL+GA+R+V+ D WNP + QA++R +R GQK++
Sbjct: 556 VERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKI 615
Query: 544 VHVYHLITSETLEWDKLRRQARKVWWSNMV 573
++Y L+++ T+E +RQ+ K S+ V
Sbjct: 616 CYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
Score = 154 (59.3 bits), Expect = 4.2e-25, Sum P(2) = 4.2e-25
Identities = 70/283 (24%), Positives = 117/283 (41%)
Query: 93 ELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEF 152
E S G +GCI++ G GKT + + ++ P C+P I ++++++
Sbjct: 166 ECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEI--EKAVVVSPSSLV 223
Query: 153 KKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLS 212
K W YN + L G+ A+ D + L ++ ++ + IL +S
Sbjct: 224 KNW------YNEVEKWLGGRIQPLAI---DGGSKDEIDRKLEGFMNQRGARVPSPILIIS 274
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y F +L G G + GL + DEGH +N + ++AL + T RR+++SGTP Q
Sbjct: 275 YETF-RLHVGVLKKGNV----GLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQ 329
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXX 332
N+ E SLV +L T E K ++ S A+ D
Sbjct: 330 NDLLEY---FSLVHFVNSGILGTAH----EFKKHFELPILKSRDAAASEADRQRGEERLR 382
Query: 333 XIAPFVN---VHKGT-VLQESLPGLRHSVVILQPDEFQKRLCK 371
+ VN + + + +L + LP VV + Q L K
Sbjct: 383 ELIGIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYK 425
Score = 131 (51.2 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 29/93 (31%), Positives = 46/93 (49%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W E S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVKFLW----------ECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKW 155
++ P C+P V+++P S++ W E +KW
Sbjct: 201 LRQSPECKPEIEKAVVVSPSSLVKNWYNEVEKW 233
Score = 43 (20.2 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 23/75 (30%), Positives = 32/75 (42%)
Query: 124 LQAYMKLHPRCR-PVIIAPRSMLLTWEEEFK-KWGIDIPFYNLN--KPELSGKENNGAVA 179
L + L C P +I + + E+ F+ GI P YN +P+LSGK
Sbjct: 447 LSSITSLKKLCNHPALIYDKCV--AEEDGFEGTLGIFPPGYNSKAVEPQLSGKMLVLDYI 504
Query: 180 LMDNRKRGRGKVGLI 194
L R R KV L+
Sbjct: 505 LAVTRSRSSDKVVLV 519
Score = 39 (18.8 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 235 LFVFDEGHTPRNDDTCMFKAL----SRIKTRRRIILSGTPFQNNFQELENTLSL 284
L +FD P ND+ M + +I R++ +GT + FQ + +L
Sbjct: 588 LVMFDPDWNPANDEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKKAL 641
>UNIPROTKB|B3NAN8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7220 "Drosophila erecta" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CH954177
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001968502.1
EnsemblMetazoa:FBtr0144523 GeneID:6543248 KEGG:der:Dere_GG24469
FlyBase:FBgn0116601 Uniprot:B3NAN8
Length = 784
Score = 316 (116.3 bits), Expect = 4.7e-25, P = 4.7e-25
Identities = 136/536 (25%), Positives = 238/536 (44%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + + ++
Sbjct: 158 PHQREGVRFMYECVEG-----------KRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQG 206
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL----MD 182
P C+P ++++P S++ WE+EF KW + L P G + N AL M
Sbjct: 207 PECKPTINKAIVVSPSSLVKNWEKEFTKW---LQGRLLCLPMEGGTKENTIRALEQFSMT 263
Query: 183 NRKRGRGKVGLIRY--VKLYS-----WKMGTGILGLSYRLFEKLVSGDELS-GILLDLPG 234
+ + G V LI Y ++Y+ +++G I +RL + D L+ L+ L
Sbjct: 264 SSRLGT-PVLLISYETFRIYAEILCKYEVGMVICDEGHRL----KNSDNLTYQALMGLKT 318
Query: 235 LF-VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVL 293
V G TP +D + +L ++ + F+ NF+ +++R + +
Sbjct: 319 KRRVLLSG-TPIQNDLTEYYSLVNF-VNPEMLGTAAVFKRNFES-----AILRGQNTDST 371
Query: 294 RTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPFVNVHKGTVLQESLPGL 353
R+ R I+K + LI + +C R + V K T +Q L
Sbjct: 372 DAERQ--RAIAKTQE--LIGLVDQCIIRRTNQILTKYLPVKFEMVICAKLTSIQLEL--- 424
Query: 354 RHSVVILQPDEFQKRL--CKAVEGVKSFVELN----YCXXXXXXXXXXXXQQ--FFESFD 405
L+ D+ ++ L CK + + ++ C + F S +
Sbjct: 425 --YTNFLKSDQVRRSLADCKEKASLTALADITTLKKICSHPNLIYEKITARDKGFENSQN 482
Query: 406 VDSAKLARLKLDPEAGIKTR---FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNW 462
V + L+PE K F+L + N+KV++ S Y + L L EQL + +
Sbjct: 483 VLPSNYNAKDLNPELSGKFMLLDFMLAAIRADGNDKVVLISNYTQTLDLF-EQLARKRKY 541
Query: 463 REGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVV 522
G + +DG +KKR ++ NDP S + + + S+KA G+NL+GA+R+ + D
Sbjct: 542 --G--FVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPD 597
Query: 523 WNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
WNP + QA++R +R GQK+ ++Y L+ S ++E L+RQ K S+ + +++
Sbjct: 598 WNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNE 653
>GENEDB_PFALCIPARUM|PF08_0126 [details] [associations]
symbol:PF08_0126 "DNA repair protein rad54,
putative" species:5833 "Plasmodium falciparum" [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003684 GO:GO:0000724
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR005012 Pfam:PF03344 EMBL:AL844507 HOGENOM:HOG000204521
KO:K10875 OMA:HASKHRV RefSeq:XP_001349480.1
ProteinModelPortal:Q8IAN4 IntAct:Q8IAN4 MINT:MINT-1564728
EnsemblProtists:PF08_0126:mRNA GeneID:2655325 KEGG:pfa:PF08_0126
EuPathDB:PlasmoDB:PF3D7_0803400 Uniprot:Q8IAN4
Length = 1239
Score = 209 (78.6 bits), Expect = 5.0e-25, Sum P(3) = 5.0e-25
Identities = 52/153 (33%), Positives = 90/153 (58%)
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSIN 485
FLL ++ +TN+KV++ S Y + L ME L ++ + +DG ++KKR IN
Sbjct: 617 FLLKNIKQNTNDKVVIVSNYTQTLDY-MEILCKENMYK----FVRLDGGINIKKRHKVIN 671
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
S+ I L S+K+ GINL+ ++R++LLD WNP ++QA++R +R GQK++ +
Sbjct: 672 DFTH-SADIFIFLLSSKSGGCGINLISSNRLILLDPDWNPANDKQALARVWREGQKKICY 730
Query: 546 VYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
+Y L + T++ +RQ K SNM+ +++
Sbjct: 731 IYRLFCTGTIDEKVYQRQISKDGLSNMIVTTTN 763
Score = 107 (42.7 bits), Expect = 5.0e-25, Sum P(3) = 5.0e-25
Identities = 26/109 (23%), Positives = 55/109 (50%)
Query: 190 KVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDT 249
K ++ ++ + + + + +L SY F ++ + L +D+ + DE H +ND T
Sbjct: 228 KEKIVSKLEGFKYDIQSTVLICSYECFR--INNEFLDKSSIDM---IICDEAHRLKNDKT 282
Query: 250 CMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK 298
+ ++ + ++R++LSGTP QN+ E +SL + + + RK
Sbjct: 283 KTYTSIYNLTAKKRLLLSGTPIQNDLGEFYALISLCNPDLFDDINLFRK 331
Score = 105 (42.0 bits), Expect = 5.0e-25, Sum P(3) = 5.0e-25
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMK--L 130
HQREG +F+++ + D D++ +GCI++ G GKT ++ L +K
Sbjct: 136 HQREGVQFVFECLMNIKD-DKI---------SGCILADDMGLGKTLQSITVLYTLLKQGF 185
Query: 131 HPRC---RPVIIAPRSMLLTWEEEFKKW 155
H +C R +I+ P S++ W +E KW
Sbjct: 186 HKKCAVRRCLILCPASLINNWNDEISKW 213
Score = 40 (19.1 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 36 NSRDSGFDSQTGC 48
N RD+ DS++GC
Sbjct: 473 NKRDNKNDSKSGC 485
>UNIPROTKB|Q8IAN4 [details] [associations]
symbol:PF08_0126 "DNA repair protein rad54, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003684 "damaged DNA binding" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003684 GO:GO:0000724
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR005012 Pfam:PF03344 EMBL:AL844507 HOGENOM:HOG000204521
KO:K10875 OMA:HASKHRV RefSeq:XP_001349480.1
ProteinModelPortal:Q8IAN4 IntAct:Q8IAN4 MINT:MINT-1564728
EnsemblProtists:PF08_0126:mRNA GeneID:2655325 KEGG:pfa:PF08_0126
EuPathDB:PlasmoDB:PF3D7_0803400 Uniprot:Q8IAN4
Length = 1239
Score = 209 (78.6 bits), Expect = 5.0e-25, Sum P(3) = 5.0e-25
Identities = 52/153 (33%), Positives = 90/153 (58%)
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSIN 485
FLL ++ +TN+KV++ S Y + L ME L ++ + +DG ++KKR IN
Sbjct: 617 FLLKNIKQNTNDKVVIVSNYTQTLDY-MEILCKENMYK----FVRLDGGINIKKRHKVIN 671
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
S+ I L S+K+ GINL+ ++R++LLD WNP ++QA++R +R GQK++ +
Sbjct: 672 DFTH-SADIFIFLLSSKSGGCGINLISSNRLILLDPDWNPANDKQALARVWREGQKKICY 730
Query: 546 VYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
+Y L + T++ +RQ K SNM+ +++
Sbjct: 731 IYRLFCTGTIDEKVYQRQISKDGLSNMIVTTTN 763
Score = 107 (42.7 bits), Expect = 5.0e-25, Sum P(3) = 5.0e-25
Identities = 26/109 (23%), Positives = 55/109 (50%)
Query: 190 KVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDT 249
K ++ ++ + + + + +L SY F ++ + L +D+ + DE H +ND T
Sbjct: 228 KEKIVSKLEGFKYDIQSTVLICSYECFR--INNEFLDKSSIDM---IICDEAHRLKNDKT 282
Query: 250 CMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK 298
+ ++ + ++R++LSGTP QN+ E +SL + + + RK
Sbjct: 283 KTYTSIYNLTAKKRLLLSGTPIQNDLGEFYALISLCNPDLFDDINLFRK 331
Score = 105 (42.0 bits), Expect = 5.0e-25, Sum P(3) = 5.0e-25
Identities = 27/88 (30%), Positives = 46/88 (52%)
Query: 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMK--L 130
HQREG +F+++ + D D++ +GCI++ G GKT ++ L +K
Sbjct: 136 HQREGVQFVFECLMNIKD-DKI---------SGCILADDMGLGKTLQSITVLYTLLKQGF 185
Query: 131 HPRC---RPVIIAPRSMLLTWEEEFKKW 155
H +C R +I+ P S++ W +E KW
Sbjct: 186 HKKCAVRRCLILCPASLINNWNDEISKW 213
Score = 40 (19.1 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 36 NSRDSGFDSQTGC 48
N RD+ DS++GC
Sbjct: 473 NKRDNKNDSKSGC 485
>FB|FBgn0002989 [details] [associations]
symbol:okr "okra" species:7227 "Drosophila melanogaster"
[GO:0046843 "dorsal appendage formation" evidence=IMP] [GO:0048477
"oogenesis" evidence=IGI;IMP;TAS] [GO:0006302 "double-strand break
repair" evidence=IMP;TAS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=TAS] [GO:0006417 "regulation of translation" evidence=TAS]
[GO:0007131 "reciprocal meiotic recombination" evidence=TAS]
[GO:0030261 "chromosome condensation" evidence=TAS] [GO:0006281
"DNA repair" evidence=NAS] [GO:0010212 "response to ionizing
radiation" evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0006338 "chromatin remodeling" evidence=IMP] [GO:0045003
"double-strand break repair via synthesis-dependent strand
annealing" evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006417 GO:GO:0051301 GO:GO:0007067 EMBL:AE014134
GO:GO:0003677 GO:GO:0010212 GO:GO:0006338 GO:GO:0004386
GO:GO:0030261 GO:GO:0008298 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0046843 GO:GO:0007131
GeneTree:ENSGT00550000074619 GO:GO:0045003 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG EMBL:Y10229
EMBL:AF069779 EMBL:AF069780 EMBL:AY069599 EMBL:FJ219215
EMBL:FJ219218 EMBL:FJ219219 EMBL:FJ219220 EMBL:FJ219221
EMBL:FJ219222 EMBL:FJ219223 EMBL:FJ219224 EMBL:FJ219225
EMBL:FJ219226 EMBL:FJ219227 EMBL:FJ219228 EMBL:FJ219229
EMBL:FJ219230 EMBL:FJ219231 EMBL:FJ219232 EMBL:FJ219233
EMBL:FJ219234 EMBL:FJ219235 EMBL:FJ219236 EMBL:FJ219237
EMBL:FJ219238 EMBL:FJ219239 EMBL:FJ219240 EMBL:FJ219241
EMBL:FJ219242 EMBL:FJ219243 EMBL:FJ219244 EMBL:FJ219245
EMBL:FJ219246 EMBL:FJ219247 RefSeq:NP_476661.1 UniGene:Dm.19774
ProteinModelPortal:O76460 SMR:O76460 IntAct:O76460 MINT:MINT-807919
STRING:O76460 PRIDE:O76460 EnsemblMetazoa:FBtr0077673 GeneID:33507
KEGG:dme:Dmel_CG3736 UCSC:CG3736-RA CTD:33507 FlyBase:FBgn0002989
InParanoid:O76460 PhylomeDB:O76460 GenomeRNAi:33507 NextBio:783944
Bgee:O76460 Uniprot:O76460
Length = 784
Score = 315 (115.9 bits), Expect = 6.2e-25, P = 6.2e-25
Identities = 135/536 (25%), Positives = 238/536 (44%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + + ++
Sbjct: 158 PHQREGVRFMYECVEG-----------KRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQG 206
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL----MD 182
P C+P ++++P S++ WE+EF KW + L P G + N AL M
Sbjct: 207 PECKPTINKAIVVSPSSLVKNWEKEFTKW---LHGRLLCLPMEGGTKENTIRALEQFSMT 263
Query: 183 NRKRGRGKVGLIRY--VKLYS-----WKMGTGILGLSYRLFEKLVSGDELS-GILLDLPG 234
+ + G V LI Y ++Y+ +++G I +RL + D L+ L+ L
Sbjct: 264 SARLGT-PVLLISYETFRIYAEILCKYEVGMVICDEGHRL----KNSDNLTYQALMGLKT 318
Query: 235 LF-VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVL 293
V G TP +D + +L ++ + F+ NF+ +++R + +
Sbjct: 319 KRRVLLSG-TPIQNDLTEYYSLVNF-VNPEMLGTAAVFKRNFES-----AILRGQNTD-- 369
Query: 294 RTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPFVNVHKGTVLQESLPGL 353
T ++ R I K + LI + +C R + V K T +Q L
Sbjct: 370 STEQERQRAIEKTQE--LIGLVDQCIIRRTNQILTKYLPVKFEMVICAKLTAIQLEL--- 424
Query: 354 RHSVVILQPDEFQKRL--CKAVEGVKSFVELN----YCXXXXXXXXXXXXQQ--FFESFD 405
L+ D+ ++ L C + + ++ C ++ F S +
Sbjct: 425 --YTNFLKSDQVRRSLADCNEKASLTALADITTLKKICSHPDLIYEKLTAREKGFENSQN 482
Query: 406 VDSAKLARLKLDPEAGIKTR---FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNW 462
V + L+PE K F+L + N+KV++ S Y + L L EQL + +
Sbjct: 483 VLPSNYKPKDLNPELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLDLF-EQLARKRKY 541
Query: 463 REGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVV 522
G + +DG +KKR ++ NDP S + + + S+KA G+NL+GA+R+ + D
Sbjct: 542 --G--FVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPD 597
Query: 523 WNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
WNP + QA++R +R GQK+ ++Y L+ S ++E L+RQ K S+ + +++
Sbjct: 598 WNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNE 653
>UNIPROTKB|K7EMY3 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL031847 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AL035406
HGNC:HGNC:16816 Ensembl:ENST00000462991 Uniprot:K7EMY3
Length = 1060
Score = 192 (72.6 bits), Expect = 9.4e-25, Sum P(2) = 9.4e-25
Identities = 55/176 (31%), Positives = 94/176 (53%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +Q
Sbjct: 425 RVLIFSQMTKMLDLLEDFLEY-----EGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCF 479
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L ST+A GINL A V++ D WNP + QA SRA+R+GQ + V +Y +T ++E
Sbjct: 480 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE- 538
Query: 558 DKLRRQA-RKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSETLIN 612
+++ + A RK+ +++V G + T E L+D + +L+ + E +++
Sbjct: 539 ERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQE-LDDILKFGTEELFKDDVEGMMS 593
Score = 179 (68.1 bits), Expect = 9.4e-25, Sum P(2) = 9.4e-25
Identities = 63/207 (30%), Positives = 98/207 (47%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID--I 159
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W D +
Sbjct: 101 GTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYV 160
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K S N + DN R KV R K K +L SY +L
Sbjct: 161 VTYTGDKESRSVIREN-EFSFEDNAIRSGKKV--FRMKKEVQIKFH--VLLTSY----EL 211
Query: 220 VSGDELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
++ D+ IL + V DE H +N+ + F+ L+ K +++L+GTP QNN +EL
Sbjct: 212 ITIDQ--AILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEEL 269
Query: 279 ENTLSLVRQEFGEVLRTVRKSGREISK 305
+ L+ + E L + +ISK
Sbjct: 270 FHLLNFLTPERFNNLEGFLEEFADISK 296
>RGD|1582725 [details] [associations]
symbol:Chd5 "chromodomain helicase DNA binding protein 5"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1582725 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OrthoDB:EOG4WH8JX
IPI:IPI00948282 Ensembl:ENSRNOT00000067364 UCSC:RGD:1582725
ArrayExpress:D4A5U0 Uniprot:D4A5U0
Length = 1940
Score = 192 (72.6 bits), Expect = 9.6e-25, Sum P(2) = 9.6e-25
Identities = 55/176 (31%), Positives = 94/176 (53%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +Q
Sbjct: 1040 RVLIFSQMTKMLDLLEDFLEY-----EGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCF 1094
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L ST+A GINL A V++ D WNP + QA SRA+R+GQ + V +Y +T ++E
Sbjct: 1095 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE- 1153
Query: 558 DKLRRQA-RKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSETLIN 612
+++ + A RK+ +++V G + T E L+D + +L+ + E +++
Sbjct: 1154 ERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQE-LDDILKFGTEELFKDDVEGMMS 1208
Score = 185 (70.2 bits), Expect = 9.6e-25, Sum P(2) = 9.6e-25
Identities = 64/207 (30%), Positives = 99/207 (47%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID--I 159
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W D +
Sbjct: 716 GTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYV 775
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K S N + DN RG KV R K K +L SY +L
Sbjct: 776 VTYTGDKESRSVIREN-EFSFEDNAIRGGKKV--FRMKKEVQIKFH--VLLTSY----EL 826
Query: 220 VSGDELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
++ D+ IL + V DE H +N+ + F+ L+ K +++L+GTP QNN +EL
Sbjct: 827 ITIDQ--AILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEEL 884
Query: 279 ENTLSLVRQEFGEVLRTVRKSGREISK 305
+ L+ + E L + +ISK
Sbjct: 885 FHLLNFLTPERFNNLEGFLEEFADISK 911
Score = 47 (21.6 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 172 KENNGAVALMDNRKRGRGK--VGL-IRYVKLYSWKMGT 206
K+N GA D++K+GRGK GL R+ + K G+
Sbjct: 253 KKNKGA---KDSKKKGRGKRVAGLKFRFGGISKRKKGS 287
>ASPGD|ASPL0000055935 [details] [associations]
symbol:AN0855 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0032392 "DNA geometric change"
evidence=IEA] [GO:0045144 "meiotic sister chromatid segregation"
evidence=IEA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IEA] [GO:0030491 "heteroduplex formation" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
EMBL:AACD01000013 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K10877 HOGENOM:HOG000204521 OMA:NTENTRT
OrthoDB:EOG4CVKG1 RefSeq:XP_658459.1 ProteinModelPortal:Q5BF25
STRING:Q5BF25 EnsemblFungi:CADANIAT00001803 GeneID:2876630
KEGG:ani:AN0855.2 Uniprot:Q5BF25
Length = 1011
Score = 221 (82.9 bits), Expect = 9.7e-25, Sum P(3) = 9.7e-25
Identities = 60/165 (36%), Positives = 83/165 (50%)
Query: 418 PEAGIKTRFL---LILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGK 474
P K R L L L ST+EKV++ S Y L L+ L L +DG
Sbjct: 627 PSCSAKIRVLDQLLHYLRTSTSEKVVLVSNYTSTLDLLANLLSSL-----SLPFLRLDGS 681
Query: 475 QDVKKRQSSINVLN-DPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAIS 533
+KRQS + N P+S L S KA G+NL+GASR+VL DV WNP + QA++
Sbjct: 682 TPAQKRQSLVEDFNRHPASTCFAFLLSAKAGGTGLNLIGASRLVLFDVDWNPATDIQAMA 741
Query: 534 RAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
R +R GQK H+Y ++ +LE +RQ K+ ++ V D
Sbjct: 742 RIHRDGQKHHCHIYRILLQGSLEEKIWQRQVTKIGLADSVMEHKD 786
Score = 109 (43.4 bits), Expect = 9.7e-25, Sum P(3) = 9.7e-25
Identities = 29/95 (30%), Positives = 46/95 (48%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+++ + G + G G I++ G GKT T+ L
Sbjct: 293 KHLRPHQREGVKFLYECVMG----------MRSFNGEGAILADDMGLGKTLQTITLLWTL 342
Query: 128 MKLHP--RCRPVI-----IAPRSMLLTWEEEFKKW 155
+K +P PVI + P +++ W EF+KW
Sbjct: 343 LKQNPIYEAAPVIKKALIVCPVTLINNWRREFRKW 377
Score = 84 (34.6 bits), Expect = 9.7e-25, Sum P(3) = 9.7e-25
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
+ + DEGH + +A+ + +RIILSGTP QN+ +E + LV
Sbjct: 429 IVIADEGHRLKTLQNKSGQAIQSLNATKRIILSGTPIQNDLKEFFAAVDLV 479
>UNIPROTKB|B3MMA5 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7217 "Drosophila ananassae" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH902620 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 RefSeq:XP_001962644.1 STRING:B3MMA5
EnsemblMetazoa:FBtr0119036 GeneID:6497163 KEGG:dan:Dana_GF14336
FlyBase:FBgn0091363 InParanoid:B3MMA5 KO:K10875 OrthoDB:EOG4PC872
Uniprot:B3MMA5
Length = 791
Score = 311 (114.5 bits), Expect = 1.7e-24, P = 1.7e-24
Identities = 135/536 (25%), Positives = 239/536 (44%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + + ++
Sbjct: 161 PHQREGVRFMYECVEG-----------KKGDFNGCIMADEMGLGKTLQCVTLVWTLLRQG 209
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P +P ++++P S++ WE+EF KW + L E KEN + +++
Sbjct: 210 PESKPTINKAIVVSPSSLVKNWEKEFTKW-LQGRLLCLAM-EGGTKENT--IRVLEQFSM 265
Query: 187 GRGKVG----LIRY--VKLYS-----WKMGTGILGLSYRLFEKLVSGDELS-GILLDLPG 234
K+G LI Y ++Y+ +++G I +RL + D L+ L+ L
Sbjct: 266 TSSKLGTPVLLISYETFRIYAEILCKYEVGMVICDEGHRL----KNSDNLTYQALMGLKT 321
Query: 235 LF-VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVL 293
V G +ND T F ++ + ++ + F+ NF EN S++R + +
Sbjct: 322 KRRVLLSGTPIQNDLTEYFSLVNFVNPE--MLGTAADFKRNF---EN--SILRGQNADST 374
Query: 294 RTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPFVNVHKGTVLQESLPGL 353
RK E K LI + +C R + V K T +Q L
Sbjct: 375 EGERKKAIE----KTQELIGLVDQCIIRRTNQILTKYLPIKFEMVICVKLTAIQ-----L 425
Query: 354 RHSVVILQPDEFQKRL--CKAVEGVKSFVELN----YCXXXXXXXXXXXXQQ--FFESFD 405
+ L D+ ++ L C + + ++ C ++ F S +
Sbjct: 426 QLYTNFLNSDQVRRSLADCNEKASLTALADITTLKKICSHPDLIHQKIEAKEKGFENSQN 485
Query: 406 VDSAKLARLKLDPE-AG--IKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNW 462
V + ++ PE +G + F+L + + N+KV++ S Y + L L EQL + +
Sbjct: 486 VLPSNYKPKEICPEWSGKFMLLDFMLAAIRAAGNDKVVLISNYTQTLDLF-EQLARKRKY 544
Query: 463 REGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVV 522
G + +DG +KKR ++ NDP S+ + + S+KA G+NL+GA+R+ + D
Sbjct: 545 --G--FVRLDGTMSIKKRSKVVDKFNDPDSECFLFMLSSKAGGCGLNLIGANRLFMFDPD 600
Query: 523 WNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
WNP + QA++R +R GQK+ ++Y L+ S T+E L+RQ K S+ + +++
Sbjct: 601 WNPANDEQAMARVWRDGQKKPCYIYRLVASGTIEEKILQRQTHKKSLSSTIIDNNE 656
>MGI|MGI:88393 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=NAS]
[GO:0006338 "chromatin remodeling" evidence=IGI] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 MGI:MGI:88393 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 GO:GO:0006338 GO:GO:0006333
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 HOGENOM:HOG000207917
OMA:AETHENE OrthoDB:EOG4PG601 EMBL:L10410 EMBL:CH466630
EMBL:BC115822 IPI:IPI00107999 PIR:A47392 RefSeq:NP_031716.2
UniGene:Mm.8137 ProteinModelPortal:P40201 SMR:P40201 IntAct:P40201
STRING:P40201 PhosphoSite:P40201 PaxDb:P40201 PRIDE:P40201
Ensembl:ENSMUST00000024627 GeneID:12648 KEGG:mmu:12648
InParanoid:Q14BJ0 NextBio:281852 Bgee:P40201 CleanEx:MM_CHD1
Genevestigator:P40201 GermOnline:ENSMUSG00000023852 Uniprot:P40201
Length = 1711
Score = 213 (80.0 bits), Expect = 1.9e-24, Sum P(3) = 1.9e-24
Identities = 65/200 (32%), Positives = 103/200 (51%)
Query: 427 LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSIN 485
LLI L N +VL+FSQ + L ++ E L++R F ++ +DG + R+ +++
Sbjct: 794 LLIRLRERGN-RVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALD 846
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
N S+ L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V+
Sbjct: 847 HFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVN 906
Query: 546 VYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT-TASEPLEDKIL--EEMAQL 602
+Y L+T ++E D L R +K+ ++V D G T S P EE++ +
Sbjct: 907 IYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAI 966
Query: 603 YNNPSETLINAIIPQPKETE 622
+E L P+ +E E
Sbjct: 967 LKFGAEELFKE--PEGEEQE 984
Score = 111 (44.1 bits), Expect = 1.9e-24, Sum P(3) = 1.9e-24
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FG--EVLRT 295
DE H +NDD+ ++K L K+ R++++GTP QN+ +EL + L + E F E
Sbjct: 612 DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE 671
Query: 296 VRKSGREISKAK-HASL 311
GRE A H L
Sbjct: 672 EHGKGREYGYASLHKEL 688
Score = 96 (38.9 bits), Expect = 1.9e-24, Sum P(3) = 1.9e-24
Identities = 40/145 (27%), Positives = 59/145 (40%)
Query: 15 PSRRAEWREYNNVDPSFLDDLNSRDSGFDSQTGCDPFTHAQGTVWELVPRDVRKKMFPHQ 74
P W + + F ++ S S+T PF + V + PR V K P
Sbjct: 415 PYSECSWEDGALISKKFQTCIDEYFSRNQSKT--TPFKDCK--VLKQRPRFVALKKQPSY 470
Query: 75 ---REGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
EG E + G L+ L +S G N CI++ G GKT T+ FL H
Sbjct: 471 IGGHEGLELRDYQLNG---LNWLAHSWCKG--NSCILADEMGLGKTIQTISFLNYLFHEH 525
Query: 132 PRCRP-VIIAPRSMLLTWEEEFKKW 155
P +++ P S L +W+ E + W
Sbjct: 526 QLYGPFLLVVPLSTLTSWQREIQTW 550
>FB|FBgn0023395 [details] [associations]
symbol:Chd3 "Chd3" species:7227 "Drosophila melanogaster"
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS;NAS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:AE014296 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0006333
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 GeneTree:ENSGT00560000076896
InterPro:IPR009463 Pfam:PF06465 EMBL:AY071503 EMBL:AF007780
RefSeq:NP_649111.1 ProteinModelPortal:O16102 SMR:O16102
DIP:DIP-21327N MINT:MINT-1651376 STRING:O16102 PaxDb:O16102
EnsemblMetazoa:FBtr0074998 GeneID:40111 KEGG:dme:Dmel_CG9594
UCSC:CG9594-RA CTD:1107 FlyBase:FBgn0023395 InParanoid:O16102
OMA:IKWRDLA OrthoDB:EOG4JH9WN PhylomeDB:O16102 GenomeRNAi:40111
NextBio:817050 Bgee:O16102 GermOnline:CG9594 Uniprot:O16102
Length = 892
Score = 211 (79.3 bits), Expect = 2.0e-24, Sum P(2) = 2.0e-24
Identities = 57/159 (35%), Positives = 89/159 (55%)
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
N +VL+FSQ +T ++ L H F EG + +DG RQ +I+ NDP S+
Sbjct: 602 NHRVLLFSQ----MTKMLNVLEH-FLEGEGYQYDRIDGSIKGDLRQKAIDRFNDPVSEHF 656
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
+ L ST+A GINL A V++ D WNP + QA SRA+R+GQK+ V +Y +T ++
Sbjct: 657 VFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHNSV 716
Query: 556 EWDKLRRQAR-KVWWSNMVFPSSDGGGNDQTTASEPLED 593
E +++ + A+ K+ +++V GG + E LED
Sbjct: 717 E-ERIMQVAKHKMMLTHLVVRPGMGGMTTNFSKDE-LED 753
Score = 154 (59.3 bits), Expect = 2.0e-24, Sum P(2) = 2.0e-24
Identities = 60/220 (27%), Positives = 106/220 (48%)
Query: 99 STGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR-PVIIA-PRSMLLTWEEEFKKWG 156
S G G I++ G GKT T+VFL + K CR P +I+ P S L WE E + W
Sbjct: 281 SWGQGIPTILADEMGLGKTIQTVVFLYSLFK-EGHCRGPFLISVPLSTLTNWERELELWA 339
Query: 157 IDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLF 216
++ Y + + GK A A++ + +V + ++ + ++ SY
Sbjct: 340 PEL--YCVTY--VGGKT---ARAVIRKHEISFEEV-TTKTMRENQTQYKFNVMLTSY--- 388
Query: 217 EKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQ 276
+ +S D +D L V DE H R++ + F+ LS+ + +++L+GTP QNN +
Sbjct: 389 -EFISVDAAFLGCIDWAALVV-DEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLE 446
Query: 277 ELENTLSLVRQ-EFGEVLRTVRKSGREISKAKHASLISSI 315
EL + L+ + +F + L+T + ++SK + + I
Sbjct: 447 ELFHLLNFLSSGKFND-LQTFQAEFTDVSKEEQVKRLHEI 485
>UNIPROTKB|Q71Z25 [details] [associations]
symbol:LMOf2365_1665 "Helicase, Snf2 family" species:265669
"Listeria monocytogenes serotype 4b str. F2365" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR007527 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50966 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0004386 EMBL:AE017262
GenomeReviews:AE017262_GR eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:YP_014262.1
ProteinModelPortal:Q71Z25 STRING:Q71Z25 GeneID:2798638
KEGG:lmf:LMOf2365_1665 PATRIC:20324567 HOGENOM:HOG000026038
OMA:NTLNAEM ProtClustDB:CLSK629151 InterPro:IPR013663 Pfam:PF08455
Uniprot:Q71Z25
Length = 1072
Score = 241 (89.9 bits), Expect = 2.2e-24, Sum P(3) = 2.2e-24
Identities = 53/120 (44%), Positives = 74/120 (61%)
Query: 437 EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI 496
+++L+FSQ+ L +I ++L +GQ + YMDGK K R +N N+ + I
Sbjct: 914 KRILLFSQFTGMLGIIRQKLEE-----DGQTLFYMDGKTPSKTRLDMVNAFNEGEND--I 966
Query: 497 MLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
L S KA G+NLVGA V+L D+ WNP VE QA RA+R+GQKRVV V+ +IT T+E
Sbjct: 967 FLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRAHRIGQKRVVQVFRMITKGTIE 1026
Score = 105 (42.0 bits), Expect = 2.2e-24, Sum P(3) = 2.2e-24
Identities = 41/139 (29%), Positives = 69/139 (49%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE++ K++A + GG I++ G GKT T+
Sbjct: 608 LPKGLKAELRDYQLTGFEWM-KSLA----------KYNLGG----ILADDMGLGKTVQTI 652
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV II P S+L W+ E +K+ IP L+ + S +A
Sbjct: 653 SFLASELEDNPNLKPVLIITPASLLYNWQSELEKFAPAIPVTVLHGTKQS------RIAE 706
Query: 181 MDNRKRGRGKVGLIRYVKL 199
M+ K G V LI Y L
Sbjct: 707 MEEMKHGH--VYLISYPSL 723
Score = 64 (27.6 bits), Expect = 2.2e-24, Sum P(3) = 2.2e-24
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
+ DE +N T +A+ +K LSGTP +N+ EL
Sbjct: 739 IIDESQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDEL 780
Score = 44 (20.5 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 18/91 (19%), Positives = 34/91 (37%)
Query: 334 IAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCXXXXXXXX 393
+ F V+ LP L+ S + D + R+ + K F+ L Y
Sbjct: 337 VVQFSESQLSEVISYVLPALQKSGKLKLDDSIEDRITQQPLDCKLFIALEYGEHTLRLEY 396
Query: 394 XXXXQQF--FESFDVDSAKLARLKLDPEAGI 422
Q F F + + ++ K+ ++ EA +
Sbjct: 397 HYGNQLFDPFATSEEENEKIMIRDVEKEARV 427
Score = 37 (18.1 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 334 IAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSF 379
IA + G V S P LR +V F + + +K++
Sbjct: 704 IAEMEEMKHGHVYLISYPSLRQDIVHFADVAFSSVIIDESQAIKNY 749
>UNIPROTKB|O14646 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0035064 "methylated histone residue
binding" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0006351 GO:GO:0006338
GO:GO:0004003 GO:GO:0035064 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
HOVERGEN:HBG005325 InterPro:IPR025260 Pfam:PF13907 CTD:1105
KO:K11367 EMBL:AF006513 EMBL:AC022121 EMBL:BC117134 IPI:IPI00297851
IPI:IPI00954192 RefSeq:NP_001261.2 UniGene:Hs.643465 PDB:2B2T
PDB:2B2U PDB:2B2V PDB:2B2W PDB:2B2Y PDB:4B4C PDBsum:2B2T
PDBsum:2B2U PDBsum:2B2V PDBsum:2B2W PDBsum:2B2Y PDBsum:4B4C
ProteinModelPortal:O14646 SMR:O14646 IntAct:O14646 STRING:O14646
PhosphoSite:O14646 PaxDb:O14646 PRIDE:O14646
Ensembl:ENST00000284049 GeneID:1105 KEGG:hsa:1105 UCSC:uc003knf.3
GeneCards:GC05M098219 H-InvDB:HIX0005061 HGNC:HGNC:1915
HPA:HPA022236 MIM:602118 neXtProt:NX_O14646 PharmGKB:PA26451
HOGENOM:HOG000207917 InParanoid:O14646 OMA:AETHENE
OrthoDB:EOG4PG601 PhylomeDB:O14646 DrugBank:DB00445
EvolutionaryTrace:O14646 GenomeRNAi:1105 NextBio:4580
ArrayExpress:O14646 Bgee:O14646 CleanEx:HS_CHD1
Genevestigator:O14646 GermOnline:ENSG00000153922 Uniprot:O14646
Length = 1710
Score = 213 (80.0 bits), Expect = 2.5e-24, Sum P(3) = 2.5e-24
Identities = 65/200 (32%), Positives = 103/200 (51%)
Query: 427 LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSIN 485
LLI L N +VL+FSQ + L ++ E L++R F ++ +DG + R+ +++
Sbjct: 796 LLIRLRERGN-RVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALD 848
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
N S+ L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V+
Sbjct: 849 HFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVN 908
Query: 546 VYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT-TASEPLEDKIL--EEMAQL 602
+Y L+T ++E D L R +K+ ++V D G T S P EE++ +
Sbjct: 909 IYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAI 968
Query: 603 YNNPSETLINAIIPQPKETE 622
+E L P+ +E E
Sbjct: 969 LKFGAEELFKE--PEGEEQE 986
Score = 111 (44.1 bits), Expect = 2.5e-24, Sum P(3) = 2.5e-24
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FG--EVLRT 295
DE H +NDD+ ++K L K+ R++++GTP QN+ +EL + L + E F E
Sbjct: 614 DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE 673
Query: 296 VRKSGREISKAK-HASL 311
GRE A H L
Sbjct: 674 EHGKGREYGYASLHKEL 690
Score = 95 (38.5 bits), Expect = 2.5e-24, Sum P(3) = 2.5e-24
Identities = 40/145 (27%), Positives = 59/145 (40%)
Query: 15 PSRRAEWREYNNVDPSFLDDLNSRDSGFDSQTGCDPFTHAQGTVWELVPRDVRKKMFPHQ 74
P W + + F ++ S S+T PF + V + PR V K P
Sbjct: 417 PYSECSWEDGALISKKFQACIDEYFSRNQSKT--TPFKDCK--VLKQRPRFVALKKQPSY 472
Query: 75 ---REGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
EG E + G L+ L +S G N CI++ G GKT T+ FL H
Sbjct: 473 IGGHEGLELRDYQLNG---LNWLAHSWCKG--NSCILADEMGLGKTIQTISFLNYLFHEH 527
Query: 132 PRCRP-VIIAPRSMLLTWEEEFKKW 155
P +++ P S L +W+ E + W
Sbjct: 528 QLYGPFLLVVPLSTLTSWQREIQTW 552
>WB|WBGene00004298 [details] [associations]
symbol:rad-54 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0033554 "cellular
response to stress" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0033554 GO:GO:0003677 GO:GO:0004386
EMBL:AL034364 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 KO:K10875 OMA:TYQALMG EMBL:AL110471
PIR:T26238 RefSeq:NP_492438.1 ProteinModelPortal:G5EEN6 SMR:G5EEN6
IntAct:G5EEN6 EnsemblMetazoa:W06D4.6 GeneID:172728
KEGG:cel:CELE_W06D4.6 CTD:172728 WormBase:W06D4.6 NextBio:876761
Uniprot:G5EEN6
Length = 818
Score = 220 (82.5 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
Identities = 47/153 (30%), Positives = 87/153 (56%)
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSIN 485
++L + +T++K ++ S Y + + ME + R G + + +DG +K+R ++
Sbjct: 554 YILAVTRKTTDDKFVLVSNYTQTIDQFMELCKLR-----GYDFVRLDGSMSIKQRSKIVD 608
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
NDP+S L S+KA G+NL+GA+R+V+ D WNP + QA++R +R GQK++
Sbjct: 609 TFNDPASTIFCFLLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKMCF 668
Query: 546 VYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
+Y L+ + ++E +RQ K S+ V + +
Sbjct: 669 IYRLLATGSIEEKMFQRQTHKKALSSCVVDAGE 701
Score = 142 (55.0 bits), Expect = 2.8e-24, Sum P(2) = 2.8e-24
Identities = 56/211 (26%), Positives = 95/211 (45%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYN 163
+GCI++ G GKT + L ++ P P + +S+++ K W +I
Sbjct: 226 HGCIMADEMGLGKTLQCISLLWTLLRQSPDACPTV--SKSIIVCPSSLVKNWDKEI---- 279
Query: 164 LNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD 223
K L + N V D+ KR + L ++ + +L +SY F +L +
Sbjct: 280 --KKWLGTRLNAMPV---DSGKREQIIACLNSFMADSKMRCAIPVLIISYETF-RLYANI 333
Query: 224 ELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS 283
SG D+ G+ + DEGH +N + ++ALS +K RR+++SGTP QN+ E + ++
Sbjct: 334 LHSG---DV-GIVICDEGHRLKNSENLTYQALSGLKCARRVLISGTPIQNDLLEYFSLVN 389
Query: 284 LVRQEF-GEVLRTVRKSGREISKAKHASLIS 313
V G +K I K + A S
Sbjct: 390 FVNPGLLGTASEFRKKFENAILKGRDADASS 420
>UNIPROTKB|F1MGF2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:DAAA02021391
EMBL:DAAA02021392 IPI:IPI00717393 UniGene:Bt.105262
Ensembl:ENSBTAT00000034967 NextBio:20866990 Uniprot:F1MGF2
Length = 1810
Score = 213 (80.0 bits), Expect = 3.0e-24, Sum P(3) = 3.0e-24
Identities = 65/200 (32%), Positives = 103/200 (51%)
Query: 427 LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSIN 485
LLI L N +VL+FSQ + L ++ E L++R F ++ +DG + R+ +++
Sbjct: 808 LLIRLRERGN-RVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALD 860
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
N S+ L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V+
Sbjct: 861 HFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVN 920
Query: 546 VYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT-TASEPLEDKIL--EEMAQL 602
+Y L+T ++E D L R +K+ ++V D G T S P EE++ +
Sbjct: 921 IYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAI 980
Query: 603 YNNPSETLINAIIPQPKETE 622
+E L P+ +E E
Sbjct: 981 LKFGAEELFKE--PEGEEQE 998
Score = 111 (44.1 bits), Expect = 3.0e-24, Sum P(3) = 3.0e-24
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FG--EVLRT 295
DE H +NDD+ ++K L K+ R++++GTP QN+ +EL + L + E F E
Sbjct: 626 DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE 685
Query: 296 VRKSGREISKAK-HASL 311
GRE A H L
Sbjct: 686 EHGKGREYGYASLHKEL 702
Score = 95 (38.5 bits), Expect = 3.0e-24, Sum P(3) = 3.0e-24
Identities = 40/145 (27%), Positives = 59/145 (40%)
Query: 15 PSRRAEWREYNNVDPSFLDDLNSRDSGFDSQTGCDPFTHAQGTVWELVPRDVRKKMFPHQ 74
P W + + F ++ S S+T PF + V + PR V K P
Sbjct: 429 PYSECSWEDGALISKKFQACIDEYFSRNQSKT--TPFKDCK--VLKQRPRFVALKKQPSY 484
Query: 75 ---REGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
EG E + G L+ L +S G N CI++ G GKT T+ FL H
Sbjct: 485 IGGHEGLELRDYQLNG---LNWLAHSWCKG--NSCILADEMGLGKTIQTISFLNYLFHEH 539
Query: 132 PRCRP-VIIAPRSMLLTWEEEFKKW 155
P +++ P S L +W+ E + W
Sbjct: 540 QLYGPFLLVVPLSTLTSWQREIQTW 564
>UNIPROTKB|F1RIM3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:FP102454 Ensembl:ENSSSCT00000003736 Uniprot:F1RIM3
Length = 1723
Score = 192 (72.6 bits), Expect = 3.1e-24, Sum P(2) = 3.1e-24
Identities = 55/176 (31%), Positives = 94/176 (53%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +Q
Sbjct: 974 RVLIFSQMTKMLDLLEDFLEY-----EGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCF 1028
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L ST+A GINL A V++ D WNP + QA SRA+R+GQ + V +Y +T ++E
Sbjct: 1029 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE- 1087
Query: 558 DKLRRQA-RKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSETLIN 612
+++ + A RK+ +++V G + T E L+D + +L+ + E +++
Sbjct: 1088 ERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQE-LDDILKFGTEELFKDDVEGMMS 1142
Score = 179 (68.1 bits), Expect = 3.1e-24, Sum P(2) = 3.1e-24
Identities = 63/207 (30%), Positives = 98/207 (47%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID--I 159
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W D +
Sbjct: 650 GTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYV 709
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K S N + DN R KV R K K +L SY +L
Sbjct: 710 VTYTGDKESRSVIREN-EFSFEDNAIRSGKKV--FRMKKEVQIKFH--VLLTSY----EL 760
Query: 220 VSGDELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
++ D+ IL + V DE H +N+ + F+ L+ K +++L+GTP QNN +EL
Sbjct: 761 ITIDQ--AILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEEL 818
Query: 279 ENTLSLVRQEFGEVLRTVRKSGREISK 305
+ L+ + E L + +ISK
Sbjct: 819 FHLLNFLTPERFNNLEGFLEEFADISK 845
>DICTYBASE|DDB_G0285117 [details] [associations]
symbol:rad54b "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0285117 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AAFI02000074 KO:K10877 RefSeq:XP_639875.1 STRING:Q54NP1
EnsemblProtists:DDB0232413 GeneID:8624946 KEGG:ddi:DDB_G0285117
InParanoid:Q54NP1 OMA:PINKSRE ProtClustDB:CLSZ2735674
Uniprot:Q54NP1
Length = 989
Score = 187 (70.9 bits), Expect = 3.2e-24, Sum P(3) = 3.2e-24
Identities = 70/247 (28%), Positives = 116/247 (46%)
Query: 352 GLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCXXXXXXXXXXXXQQFFE--SFDVDSA 409
G R S L K+LC + S + LN Q + ++ +++
Sbjct: 563 GSRGSATSLSTITLLKKLCNS----PSLLLLNNKQDEGGEQQQTEIQNILKKHNYTLENY 618
Query: 410 KLARLKLDPEAGIKTRFLLILL-ELST-NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQE 467
+ + + D E+G K F+ L+ +L NEK+++ S + + L + E+L R + +
Sbjct: 619 QEIQEQQDNESG-KLLFVESLIKQLKPMNEKLVLVSNFTKTLD-VFERLCKRLSI----D 672
Query: 468 VLYMDGKQDVKKRQSSINVLNDP----------SSQARIMLASTKACCEGINLVGASRVV 517
L +DG RQ+ ++ N SSQ ++ L S KA GINL+G + +V
Sbjct: 673 TLRLDGDVKADSRQALVDKFNSSTQNVSSSKSSSSQYQVFLLSAKAGGVGINLIGGNHLV 732
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPS- 576
L D WNP ++ QA+ R +R GQ + V +Y L ++ T+E +RQ K SN +
Sbjct: 733 LYDPDWNPAIDIQAMERIWREGQTKPVFIYRLFSTGTIEEKIYQRQLMKESISNSIVDKK 792
Query: 577 -SDGGGN 582
+D GGN
Sbjct: 793 FNDNGGN 799
Score = 112 (44.5 bits), Expect = 3.2e-24, Sum P(3) = 3.2e-24
Identities = 28/95 (29%), Positives = 47/95 (49%)
Query: 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQ 125
+ + + PHQR G +F++ + G NS G +G I++ G GKT TL L
Sbjct: 275 IGRHLRPHQRRGVKFLYDCVTG--------NSNDNGY-SGAILADQMGLGKTLQTLALLW 325
Query: 126 AYMKLHPRCRP-----VIIAPRSMLLTWEEEFKKW 155
+K P +P +I+ P +++ W+ E +KW
Sbjct: 326 TLLKQSPYGKPTIKKAIIVTPSTLVNNWKSEIQKW 360
Score = 112 (44.5 bits), Expect = 3.2e-24, Sum P(3) = 3.2e-24
Identities = 37/151 (24%), Positives = 66/151 (43%)
Query: 234 GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVL 293
GL V DE H +N + +++ ++ R+I+L+GTP QNN E + + L
Sbjct: 414 GLMVCDEAHRLKNSNAKTTQSIMSVRCDRKILLTGTPIQNNLVEFYSMMDFANPNCLGSL 473
Query: 294 RTVRKSGR-EISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPFVNVHKGTVLQESLPG 352
+KS I+K++ + +S R + PF+ K +L++ LP
Sbjct: 474 ADFKKSFIIPINKSRESP--NSTSTSEGIRKSIQLSKL---VKPFIIRRKSNILEKYLPP 528
Query: 353 LRHSVVILQPDEFQKRLCKAV---EGVKSFV 380
R ++ + Q L K++ VKS +
Sbjct: 529 KRVQIIFCKLSSLQIELYKSILNSNSVKSLL 559
>UNIPROTKB|E2R1M3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:AAEX03003895 EMBL:AAEX03003896 EMBL:AAEX03003897
Ensembl:ENSCAFT00000031086 Uniprot:E2R1M3
Length = 1812
Score = 192 (72.6 bits), Expect = 3.5e-24, Sum P(2) = 3.5e-24
Identities = 55/176 (31%), Positives = 94/176 (53%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +Q
Sbjct: 905 RVLIFSQMTKMLDLLEDFLEY-----EGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCF 959
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L ST+A GINL A V++ D WNP + QA SRA+R+GQ + V +Y +T ++E
Sbjct: 960 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE- 1018
Query: 558 DKLRRQA-RKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSETLIN 612
+++ + A RK+ +++V G + T E L+D + +L+ + E +++
Sbjct: 1019 ERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQE-LDDILKFGTEELFKDDVEGMMS 1073
Score = 179 (68.1 bits), Expect = 3.5e-24, Sum P(2) = 3.5e-24
Identities = 63/207 (30%), Positives = 98/207 (47%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID--I 159
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W D +
Sbjct: 581 GTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYV 640
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K S N + DN R KV R K K +L SY +L
Sbjct: 641 VTYTGDKESRSVIREN-EFSFEDNAIRSGKKV--FRMKKEVQIKFH--VLLTSY----EL 691
Query: 220 VSGDELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
++ D+ IL + V DE H +N+ + F+ L+ K +++L+GTP QNN +EL
Sbjct: 692 ITIDQ--AILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEEL 749
Query: 279 ENTLSLVRQEFGEVLRTVRKSGREISK 305
+ L+ + E L + +ISK
Sbjct: 750 FHLLNFLTPERFNNLEGFLEEFADISK 776
>UNIPROTKB|E2QUI5 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 EMBL:AAEX03002026
RefSeq:XP_848459.1 Ensembl:ENSCAFT00000012332 GeneID:488891
KEGG:cfa:488891 NextBio:20862162 Uniprot:E2QUI5
Length = 1711
Score = 213 (80.0 bits), Expect = 4.0e-24, Sum P(3) = 4.0e-24
Identities = 65/200 (32%), Positives = 103/200 (51%)
Query: 427 LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSIN 485
LLI L N +VL+FSQ + L ++ E L++R F ++ +DG + R+ +++
Sbjct: 795 LLIRLRERGN-RVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALD 847
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
N S+ L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V+
Sbjct: 848 HFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVN 907
Query: 546 VYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT-TASEPLEDKIL--EEMAQL 602
+Y L+T ++E D L R +K+ ++V D G T S P EE++ +
Sbjct: 908 IYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAI 967
Query: 603 YNNPSETLINAIIPQPKETE 622
+E L P+ +E E
Sbjct: 968 LKFGAEELFKE--PEGEEQE 985
Score = 111 (44.1 bits), Expect = 4.0e-24, Sum P(3) = 4.0e-24
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FG--EVLRT 295
DE H +NDD+ ++K L K+ R++++GTP QN+ +EL + L + E F E
Sbjct: 613 DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE 672
Query: 296 VRKSGREISKAK-HASL 311
GRE A H L
Sbjct: 673 EHGKGREYGYASLHKEL 689
Score = 93 (37.8 bits), Expect = 4.0e-24, Sum P(3) = 4.0e-24
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKW 155
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W
Sbjct: 498 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTW 551
>UNIPROTKB|F1PJC9 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:AAEX03009776 RefSeq:XP_532592.3 Ensembl:ENSCAFT00000006871
GeneID:475368 KEGG:cfa:475368 Uniprot:F1PJC9
Length = 747
Score = 208 (78.3 bits), Expect = 4.0e-24, Sum P(2) = 4.0e-24
Identities = 49/150 (32%), Positives = 85/150 (56%)
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSS 483
++L + +++KV++ S Y + L L + R R LY +DG +KKR
Sbjct: 503 YILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRAR-------RYLYVRLDGTMSIKKRAKV 555
Query: 484 INVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRV 543
+ N+P S + + S+KA G+NL+GA+R+V+ D WNP + QA++R +R GQK+
Sbjct: 556 VERFNNPLSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKT 615
Query: 544 VHVYHLITSETLEWDKLRRQARKVWWSNMV 573
++Y L+++ T+E +RQ+ K S+ V
Sbjct: 616 CYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
Score = 152 (58.6 bits), Expect = 4.0e-24, Sum P(2) = 4.0e-24
Identities = 50/185 (27%), Positives = 85/185 (45%)
Query: 93 ELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEF 152
E S G +GCI++ G GKT + + ++ P C+P I ++++++
Sbjct: 166 ECVTSRRIPGSHGCIMADEMGLGKTLQCITLIWTLLRQSPECKPEI--DKAVVVSPSSLV 223
Query: 153 KKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLS 212
K W YN L G+ A+ D + L ++ ++ + IL +S
Sbjct: 224 KNW------YNEVGKWLGGRIQPLAI---DGGSKDEIDQKLEGFMNQRGVRVPSPILIIS 274
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y F +L G G + GL + DEGH +N + ++AL + T RR+++SGTP Q
Sbjct: 275 YETF-RLHVGVLQKGSV----GLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQ 329
Query: 273 NNFQE 277
N+ E
Sbjct: 330 NDLLE 334
Score = 128 (50.1 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 29/93 (31%), Positives = 45/93 (48%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W E S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVKFLW----------ECVTSRRIPGSHGCIMADEMGLGKTLQCITLIWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKW 155
++ P C+P V+++P S++ W E KW
Sbjct: 201 LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKW 233
Score = 38 (18.4 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 22/81 (27%), Positives = 36/81 (44%)
Query: 119 LTLVFLQAYMKLHPRCR-PVIIAPRSMLLTWEEEFKKWGIDI--PFYNLN--KPELSGKE 173
+T+ L + L C P +I + + EE+ + ++I P Y+ +P+LSGK
Sbjct: 442 MTVSSLSSITLLKKLCNHPALIYDKCVE---EEDGFEGALEIFPPTYSAKALEPQLSGKM 498
Query: 174 NNGAVALMDNRKRGRGKVGLI 194
L R R KV L+
Sbjct: 499 LVLDYILAVTRSRSSDKVVLV 519
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 213 (80.0 bits), Expect = 4.0e-24, Sum P(3) = 4.0e-24
Identities = 65/200 (32%), Positives = 103/200 (51%)
Query: 427 LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSIN 485
LLI L N +VL+FSQ + L ++ E L++R F ++ +DG + R+ +++
Sbjct: 792 LLIRLRERGN-RVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALD 844
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
N S+ L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V+
Sbjct: 845 HFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVN 904
Query: 546 VYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT-TASEPLEDKIL--EEMAQL 602
+Y L+T ++E D L R +K+ ++V D G T S P EE++ +
Sbjct: 905 IYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFNKEELSAI 964
Query: 603 YNNPSETLINAIIPQPKETE 622
+E L P+ +E E
Sbjct: 965 LKFGAEELFKE--PEGEEQE 982
Score = 111 (44.1 bits), Expect = 4.0e-24, Sum P(3) = 4.0e-24
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FG--EVLRT 295
DE H +NDD+ ++K L K+ R++++GTP QN+ +EL + L + E F E
Sbjct: 610 DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE 669
Query: 296 VRKSGREISKAK-HASL 311
GRE A H L
Sbjct: 670 EHGKGREYGYASLHKEL 686
Score = 93 (37.8 bits), Expect = 4.0e-24, Sum P(3) = 4.0e-24
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKW 155
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W
Sbjct: 495 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTW 548
>UNIPROTKB|Q8TDI0 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
EMBL:AF425231 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 OrthoDB:EOG4WH8JX
EMBL:AL035406 EMBL:AL117491 EMBL:AB007913 IPI:IPI00152535
PIR:T17269 RefSeq:NP_056372.1 UniGene:Hs.522898
ProteinModelPortal:Q8TDI0 SMR:Q8TDI0 IntAct:Q8TDI0 STRING:Q8TDI0
PhosphoSite:Q8TDI0 DMDM:51701343 PaxDb:Q8TDI0 PRIDE:Q8TDI0
DNASU:26038 Ensembl:ENST00000262450 GeneID:26038 KEGG:hsa:26038
UCSC:uc001amb.2 CTD:26038 GeneCards:GC01M006096 HGNC:HGNC:16816
HPA:HPA015809 MIM:610771 neXtProt:NX_Q8TDI0 PharmGKB:PA134969178
InParanoid:Q8TDI0 KO:K14435 OMA:KRIDDGD PhylomeDB:Q8TDI0
ChiTaRS:CHD5 GenomeRNAi:26038 NextBio:47863 ArrayExpress:Q8TDI0
Bgee:Q8TDI0 CleanEx:HS_CHD5 Genevestigator:Q8TDI0
GermOnline:ENSG00000116254 Uniprot:Q8TDI0
Length = 1954
Score = 192 (72.6 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 55/176 (31%), Positives = 94/176 (53%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +Q
Sbjct: 1042 RVLIFSQMTKMLDLLEDFLEY-----EGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCF 1096
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L ST+A GINL A V++ D WNP + QA SRA+R+GQ + V +Y +T ++E
Sbjct: 1097 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE- 1155
Query: 558 DKLRRQA-RKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSETLIN 612
+++ + A RK+ +++V G + T E L+D + +L+ + E +++
Sbjct: 1156 ERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQE-LDDILKFGTEELFKDDVEGMMS 1210
Score = 179 (68.1 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 63/207 (30%), Positives = 98/207 (47%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID--I 159
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W D +
Sbjct: 718 GTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYV 777
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K S N + DN R KV R K K +L SY +L
Sbjct: 778 VTYTGDKESRSVIREN-EFSFEDNAIRSGKKV--FRMKKEVQIKFH--VLLTSY----EL 828
Query: 220 VSGDELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
++ D+ IL + V DE H +N+ + F+ L+ K +++L+GTP QNN +EL
Sbjct: 829 ITIDQ--AILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEEL 886
Query: 279 ENTLSLVRQEFGEVLRTVRKSGREISK 305
+ L+ + E L + +ISK
Sbjct: 887 FHLLNFLTPERFNNLEGFLEEFADISK 913
>FB|FBgn0262519 [details] [associations]
symbol:Mi-2 species:7227 "Drosophila melanogaster"
[GO:0016887 "ATPase activity" evidence=IDA;NAS] [GO:0005634
"nucleus" evidence=ISS;IDA;NAS] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0016581 "NuRD complex" evidence=ISS;TAS]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS;IDA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0005700 "polytene chromosome"
evidence=IDA] [GO:0042766 "nucleosome mobilization" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007517 "muscle
organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0031491 "nucleosome binding"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 EMBL:AE014296 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0000122
GO:GO:0048813 GO:GO:0007517 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786
PROSITE:PS01359 GO:GO:0005700 GO:GO:0042766 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF119716 EMBL:AY113368 RefSeq:NP_001163476.1
RefSeq:NP_649154.2 UniGene:Dm.28317 ProteinModelPortal:O97159
SMR:O97159 DIP:DIP-22862N IntAct:O97159 MINT:MINT-864813
STRING:O97159 PaxDb:O97159 EnsemblMetazoa:FBtr0074919
EnsemblMetazoa:FBtr0302046 GeneID:40170 KEGG:dme:Dmel_CG8103
CTD:40170 FlyBase:FBgn0262519 InParanoid:O97159 OrthoDB:EOG4T76J4
ChiTaRS:Mi-2 GenomeRNAi:40170 NextBio:817384 Bgee:O97159
GermOnline:CG8103 Uniprot:O97159
Length = 1982
Score = 195 (73.7 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 55/161 (34%), Positives = 87/161 (54%)
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQ 493
N +VL+FSQ + L ++ + L EG++ Y +DG RQ +I+ N P +Q
Sbjct: 1068 NHRVLIFSQMTKMLDILEDFL-------EGEQYKYERIDGGITGTLRQEAIDRFNAPGAQ 1120
Query: 494 ARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553
+ L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1121 QFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRN 1180
Query: 554 TLEWDKLRRQA-RKVWWSNMVFPSSDGGGNDQTTASEPLED 593
++E +++ + A RK+ +++V GG T E L+D
Sbjct: 1181 SVE-ERVTQVAKRKMMLTHLVVRPGMGGKGANFTKQE-LDD 1219
Score = 176 (67.0 bits), Expect = 4.1e-24, Sum P(2) = 4.1e-24
Identities = 61/210 (29%), Positives = 103/210 (49%)
Query: 99 STGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR-PVIIA-PRSMLLTWEEEFKKWG 156
S G G I++ G GKT T+ FL + K CR P ++A P S L+ WE EF+ W
Sbjct: 744 SWGQGIDTILADEMGLGKTIQTVTFLYSLYK-EGHCRGPFLVAVPLSTLVNWEREFELWA 802
Query: 157 IDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLF 216
D FY + G +++ AV + G + + +L + + +L SY
Sbjct: 803 PD--FYCIT---YIGDKDSRAVIRENELSFEEGAIRGSKVSRLRTTQYKFNVLLTSY--- 854
Query: 217 EKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQ 276
+L+S D +D + V DE H +++ + F+ L+ +++L+GTP QNN +
Sbjct: 855 -ELISMDAACLGSIDW-AVLVVDEAHRLKSNQSKFFRILNSYTIAYKLLLTGTPLQNNLE 912
Query: 277 ELENTLS-LVRQEFGEVLRTVRKSGREISK 305
EL + L+ L R +F + L+ + ++SK
Sbjct: 913 ELFHLLNFLSRDKFND-LQAFQGEFADVSK 941
Score = 40 (19.1 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 343 GTVLQESLPGLRHSVVILQPDEF 365
GT LQ +L L H + L D+F
Sbjct: 904 GTPLQNNLEELFHLLNFLSRDKF 926
>UNIPROTKB|J9P6Y8 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AETHENE EMBL:AAEX03002026 Ensembl:ENSCAFT00000043995
Uniprot:J9P6Y8
Length = 1782
Score = 213 (80.0 bits), Expect = 4.6e-24, Sum P(3) = 4.6e-24
Identities = 65/200 (32%), Positives = 103/200 (51%)
Query: 427 LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSIN 485
LLI L N +VL+FSQ + L ++ E L++R F ++ +DG + R+ +++
Sbjct: 778 LLIRLRERGN-RVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALD 830
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
N S+ L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V+
Sbjct: 831 HFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVN 890
Query: 546 VYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT-TASEPLEDKIL--EEMAQL 602
+Y L+T ++E D L R +K+ ++V D G T S P EE++ +
Sbjct: 891 IYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAI 950
Query: 603 YNNPSETLINAIIPQPKETE 622
+E L P+ +E E
Sbjct: 951 LKFGAEELFKE--PEGEEQE 968
Score = 111 (44.1 bits), Expect = 4.6e-24, Sum P(3) = 4.6e-24
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FG--EVLRT 295
DE H +NDD+ ++K L K+ R++++GTP QN+ +EL + L + E F E
Sbjct: 596 DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE 655
Query: 296 VRKSGREISKAK-HASL 311
GRE A H L
Sbjct: 656 EHGKGREYGYASLHKEL 672
Score = 93 (37.8 bits), Expect = 4.6e-24, Sum P(3) = 4.6e-24
Identities = 19/54 (35%), Positives = 28/54 (51%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKW 155
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W
Sbjct: 481 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTW 534
>UNIPROTKB|F1SSZ2 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:FP102454 Ensembl:ENSSSCT00000019561 Uniprot:F1SSZ2
Length = 1667
Score = 190 (71.9 bits), Expect = 4.7e-24, Sum P(2) = 4.7e-24
Identities = 55/172 (31%), Positives = 91/172 (52%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +Q
Sbjct: 958 RVLIFSQMTKMLDLLEDFLEY-----EGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCF 1012
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L ST+A GINL A V++ D WNP + QA SRA+R+GQ + V +Y +T ++E
Sbjct: 1013 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE- 1071
Query: 558 DKLRRQA-RKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSE 608
+++ + A RK+ +++V G + T E L+D + +L+ + E
Sbjct: 1072 ERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQE-LDDILKFGTEELFKDDVE 1122
Score = 179 (68.1 bits), Expect = 4.7e-24, Sum P(2) = 4.7e-24
Identities = 63/207 (30%), Positives = 98/207 (47%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID--I 159
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W D +
Sbjct: 634 GTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYV 693
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K S N + DN R KV R K K +L SY +L
Sbjct: 694 VTYTGDKESRSVIREN-EFSFEDNAIRSGKKV--FRMKKEVQIKFH--VLLTSY----EL 744
Query: 220 VSGDELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
++ D+ IL + V DE H +N+ + F+ L+ K +++L+GTP QNN +EL
Sbjct: 745 ITIDQ--AILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEEL 802
Query: 279 ENTLSLVRQEFGEVLRTVRKSGREISK 305
+ L+ + E L + +ISK
Sbjct: 803 FHLLNFLTPERFNNLEGFLEEFADISK 829
>UNIPROTKB|G4N791 [details] [associations]
symbol:MGG_06447 "SNF2 family ATP-dependent
chromatin-remodeling factor snf21" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001234 RefSeq:XP_003717120.1 ProteinModelPortal:G4N791
EnsemblFungi:MGG_06447T0 GeneID:2684602 KEGG:mgr:MGG_06447
Uniprot:G4N791
Length = 1592
Score = 187 (70.9 bits), Expect = 5.5e-24, Sum P(2) = 5.5e-24
Identities = 49/128 (38%), Positives = 72/128 (56%)
Query: 437 EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI 496
+KVL+FS I P+ +E L + + +DG+ + RQ+S+ N ++ +
Sbjct: 957 DKVLIFSSRI-PVLNFLENLMKM----QKRPYSRLDGETKISTRQASVANFN--ANNDEV 1009
Query: 497 MLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
L ST A G+N+ GA+RVV++D W P E+QAI RAYR+GQ + V+VY LI T E
Sbjct: 1010 YLISTNAGGVGLNIQGANRVVMMDFQWQPANEQQAIGRAYRIGQTKPVYVYWLIVGGTYE 1069
Query: 557 WDKLRRQA 564
KL A
Sbjct: 1070 -PKLHAAA 1076
Score = 181 (68.8 bits), Expect = 5.5e-24, Sum P(2) = 5.5e-24
Identities = 75/331 (22%), Positives = 136/331 (41%)
Query: 54 AQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPG 113
+QG ++ VP + + + HQ EG F+W + D+ GC+++H G
Sbjct: 559 SQGFIY--VPEPIAQNIKDHQIEGVRFMWNQVVN----DDRSQ--------GCLLAHTMG 604
Query: 114 TGKTGLTLVFLQAYM---------------KLHPRCRPVIIAPRSMLLTWEEEFKKWGID 158
GKT + L A K R + +++ P +L W +EF +W ++
Sbjct: 605 LGKTVQVICLLVAIQHAAQSPDPSVVSQIPKELQRSQTLVLCPPGLLNNWLDEFSRW-VE 663
Query: 159 IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEK 218
P+ L G + +D+ + I W GIL + Y LF
Sbjct: 664 -PYDAL-----------GRIYKIDSEIPAEARAASIE-----PWVNTGGILLMGYSLFRS 706
Query: 219 LVS-GD-ELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQ 276
LVS GD ++ L +LP + V DE HT +N+ + + +A++ K + +I ++G+P N+
Sbjct: 707 LVSSGDSKMQTWLTELPSIVVADEAHTIKNERSKISEAMANFKAKAKIAMTGSPLANSVG 766
Query: 277 ELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAP 336
+ + ++ V + L ++ + L R ++P
Sbjct: 767 DYFSMINWVAPNY---LGPRKEFTHFFASPIQEGLFVDSSPAEKRRAMKLLKALKDTVSP 823
Query: 337 FVNVHKGTVLQESLPGLRHSVVILQPDEFQK 367
V+ T L+ LP R V+++ E+QK
Sbjct: 824 KVHRMTTTALRGQLPEKREYVIVVPLTEYQK 854
Score = 42 (19.8 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 294 RTVRKS--GREISKAKHASLISSIGRCANHRDD 324
+ VRKS GREI + +LI+ + R H D
Sbjct: 905 KDVRKSDSGREIPRHVIGNLIAEVNRRDIHNLD 937
>UNIPROTKB|F1MFF9 [details] [associations]
symbol:Bt.62145 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:DAAA02043090 IPI:IPI00688794
Ensembl:ENSBTAT00000010688 Uniprot:F1MFF9
Length = 1852
Score = 190 (71.9 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 55/172 (31%), Positives = 91/172 (52%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +Q
Sbjct: 988 RVLIFSQMTKMLDLLEDFLEY-----EGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCF 1042
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L ST+A GINL A V++ D WNP + QA SRA+R+GQ + V +Y +T ++E
Sbjct: 1043 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE- 1101
Query: 558 DKLRRQA-RKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSE 608
+++ + A RK+ +++V G + T E L+D + +L+ + E
Sbjct: 1102 ERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQE-LDDILKFGTEELFKDDVE 1152
Score = 179 (68.1 bits), Expect = 6.0e-24, Sum P(2) = 6.0e-24
Identities = 63/207 (30%), Positives = 98/207 (47%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID--I 159
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W D +
Sbjct: 664 GTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYV 723
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K S N + DN R KV R K K +L SY +L
Sbjct: 724 VTYTGDKESRSVIREN-EFSFEDNAIRSGKKV--FRMKKEVQIKFH--VLLTSY----EL 774
Query: 220 VSGDELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
++ D+ IL + V DE H +N+ + F+ L+ K +++L+GTP QNN +EL
Sbjct: 775 ITIDQ--AILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEEL 832
Query: 279 ENTLSLVRQEFGEVLRTVRKSGREISK 305
+ L+ + E L + +ISK
Sbjct: 833 FHLLNFLTPERFNNLEGFLEEFADISK 859
>ASPGD|ASPL0000068126 [details] [associations]
symbol:cshA species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:BN001304
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000119 HOGENOM:HOG000170952 KO:K10841
OrthoDB:EOG44TSGZ RefSeq:XP_664707.1 ProteinModelPortal:Q5AX77
STRING:Q5AX77 EnsemblFungi:CADANIAT00000362 GeneID:2869817
KEGG:ani:AN7103.2 OMA:HSALEHD Uniprot:Q5AX77
Length = 1193
Score = 308 (113.5 bits), Expect = 7.7e-24, P = 7.7e-24
Identities = 131/494 (26%), Positives = 217/494 (43%)
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA-PRSMLLTWEEEFKKWGIDIPFYN 163
G II G GKT + FL +P+I+ P +++ W EF +W P +
Sbjct: 418 GGIIGDEMGLGKTIQAIAFLAGLHYSKRLTKPIIVVCPATVMKQWVNEFHRWW---PPFR 474
Query: 164 LNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILG---LSYRLFEK-- 218
++ SG +G V N K + + Y +S +G+ + R+ E+
Sbjct: 475 VSILHTSG---SGMV----NIKSESSREDALMYGTYWSGGSSSGLKAARKVVKRVVEEGH 527
Query: 219 -LV---SG-DELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
LV SG + +L+ + G + DEGH RN +T + ++T RIILSGTP Q
Sbjct: 528 VLVTTYSGLQSYASLLIPVEWGGTILDEGHKIRNPNTSITMHAKELRTPHRIILSGTPMQ 587
Query: 273 NNFQELENTLSLV-RQEFGEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDDXXX 327
NN EL + V G ++ + I + +A+ + + +CA D
Sbjct: 588 NNLTELWSLFDFVFPMRLGTLVNFRNQFEFPIRQGGYANASNLQVQTAAKCAETLKDA-- 645
Query: 328 XXXXXXIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCXX 387
I+P++ + LP V+ + + Q++ +A G + +
Sbjct: 646 ------ISPYLLQRFKIDVAADLPKKSEQVLFCRLTKPQRQAYEAFLGSEEMQSI-LRGR 698
Query: 388 XXXXXXXXXXQQFFESFDVDSAKLARLKLD---PEAGIKTRFLLILLEL--STNEKVLVF 442
++ D+ + KL K + P K + + LLEL T K L+F
Sbjct: 699 RQVLYGVDILRKICNHPDLQNHKLLYAKPNYGNPTKSGKMQVVRSLLELWKETGHKTLLF 758
Query: 443 SQYIEPLTLIMEQLRHR--FNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLA 499
+Q+ L ++ + ++ FN+R MDG ++ RQ+ ++ N DP + L
Sbjct: 759 AQHRIMLDILEKFVKSLSGFNYRR------MDGTTPIQHRQTMVDEFNKDPD--LHVFLL 810
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
+TK G+NL GA RV++ D WNP + QA RA+RLGQKR V +Y L+T+ T+E
Sbjct: 811 TTKVGGLGVNLTGADRVIIYDPDWNPSTDVQARERAWRLGQKRDVTIYRLMTAGTIEEKI 870
Query: 560 LRRQARKVWWSNMV 573
RQ K + +N +
Sbjct: 871 YHRQIFKQFLTNKI 884
Score = 151 (58.2 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 65/234 (27%), Positives = 100/234 (42%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P D+ +F +Q+ G +++W EL + GG II G GKT +
Sbjct: 390 IPGDIHPLLFDYQKTGVQWMW----------EL-HQQQVGG----IIGDEMGLGKTIQAI 434
Query: 122 VFLQAYMKLHPRCRPVIIA-PRSMLLTWEEEFKKWGIDIPF-YNLNKPELSG-----KEN 174
FL +P+I+ P +++ W EF +W PF ++ SG E+
Sbjct: 435 AFLAGLHYSKRLTKPIIVVCPATVMKQWVNEFHRWWP--PFRVSILHTSGSGMVNIKSES 492
Query: 175 NGAVALMDNRK-RGRGKVGLIRYVKLYSWKMGTG-ILGLSYRLFEKLVSGDELSGILLDL 232
+ ALM G GL K+ + G +L +Y + S +L+ +
Sbjct: 493 SREDALMYGTYWSGGSSSGLKAARKVVKRVVEEGHVLVTTYSGLQSYAS------LLIPV 546
Query: 233 P-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
G + DEGH RN +T + ++T RIILSGTP QNN EL + V
Sbjct: 547 EWGGTILDEGHKIRNPNTSITMHAKELRTPHRIILSGTPMQNNLTELWSLFDFV 600
>UNIPROTKB|E7EU19 [details] [associations]
symbol:RAD54L2 "Helicase ARIP4" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
GO:GO:0003712 EMBL:AC099050 EMBL:AC113933 HGNC:HGNC:29123
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AC092037
IPI:IPI00916394 ProteinModelPortal:E7EU19 SMR:E7EU19 PRIDE:E7EU19
Ensembl:ENST00000296477 ArrayExpress:E7EU19 Bgee:E7EU19
Uniprot:E7EU19
Length = 1161
Score = 231 (86.4 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 63/162 (38%), Positives = 85/162 (52%)
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF----NWREGQ-------EVLY--MD 472
F LI + +K+LVFSQ + L LI E L R EGQ + Y +D
Sbjct: 421 FHLIEESVKLGDKILVFSQSLSTLALIEEFLGKREVPCPPGTEGQGAQKWVRNISYFRLD 480
Query: 473 GKQDVKKRQSSINVLNDPSSQAR-IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531
G +R+ IN NDPS+ + L ST+A C G+NL+GA+RVV+ D WNP + QA
Sbjct: 481 GSTPAFERERLINQFNDPSNLTTWLFLLSTRAGCLGVNLIGANRVVVFDASWNPCHDAQA 540
Query: 532 ISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+ R YR GQK+ ++Y L+ TLE RQ K S+ V
Sbjct: 541 VCRVYRYGQKKPCYIYRLVADYTLEKKIYDRQISKQGMSDRV 582
Score = 115 (45.5 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 37/138 (26%), Positives = 59/138 (42%)
Query: 233 PGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GE 291
P + + DEGH +N +AL I++RRR++L+G P QNN E + VR +F G
Sbjct: 151 PDVVICDEGHRIKNCQASTSQALKNIRSRRRVVLTGYPLQNNLIEYWCMVDFVRPDFLGT 210
Query: 292 VLRTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPFVNVHKGTVLQESLP 351
R I + R +R + FV TVL+ LP
Sbjct: 211 RQEFSNMFERPILNGQCIDSTPQDVRLMRYRSHVLHSL----LEGFVQRRGHTVLKIHLP 266
Query: 352 GLRHSVVILQPDEFQKRL 369
+V++++ + Q+ L
Sbjct: 267 AKEENVILVRLSKIQRDL 284
Score = 59 (25.8 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 29/111 (26%), Positives = 40/111 (36%)
Query: 113 GTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIP--FYNLNKPELS 170
G GKT + F+ + P + I P + L W EF W + P NKPE
Sbjct: 2 GLGKTLQVISFIDVLFRHTPAKTVLAIVPVNTLQNWLAEFNMW-LPPPEALPADNKPEEV 60
Query: 171 GKENNGAVALMDNRKR--GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
L D K R KV + W G+L + Y ++ L
Sbjct: 61 QPRFFKVHILNDEHKTMASRAKV-------MADWVSEGGVLLMGYEMYRLL 104
>WB|WBGene00000482 [details] [associations]
symbol:chd-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=TAS]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0046580 "negative regulation of Ras protein
signal transduction" evidence=IMP] [GO:0001709 "cell fate
determination" evidence=IMP] [GO:0000118 "histone deacetylase
complex" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=TAS] [GO:0003678 "DNA helicase activity" evidence=ISS]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003682 GO:GO:0006338
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0001709 GO:GO:0046580 GO:GO:0008026 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0000118 GeneTree:ENSGT00560000076896
EMBL:AF308444 EMBL:Z67884 EMBL:Z67881 PIR:T20160 RefSeq:NP_510140.1
UniGene:Cel.16950 ProteinModelPortal:Q22516 SMR:Q22516
STRING:Q22516 PaxDb:Q22516 EnsemblMetazoa:T14G8.1 GeneID:181421
KEGG:cel:CELE_T14G8.1 UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1
HOGENOM:HOG000231124 InParanoid:Q22516 OMA:INIIMEL NextBio:913870
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
Uniprot:Q22516
Length = 1787
Score = 193 (73.0 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 60/195 (30%), Positives = 107/195 (54%)
Query: 406 VDSAKLARLKLDPEAGIKT--RFLLI---LLELSTN-EKVLVFSQYIEPLTLIMEQLRHR 459
+++ KL + A IK +F+L+ L +L +VL+FSQ +T++++ L
Sbjct: 920 LEAPKLKNGMYEGSALIKNAGKFVLLQKMLRKLKDGGHRVLIFSQ----MTMMLDILED- 974
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
F EG + +DG ++RQ +I+ N P ++ + L ST+A GINL A V++
Sbjct: 975 FCDVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQFVFLLSTRAGGLGINLATADTVIIY 1034
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK-VWWSNMVFPSSD 578
D WNP + QA SRA+RLGQK V +Y +T ++E +++ A+K + +++V +
Sbjct: 1035 DSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVE-ERITSVAKKKMLLTHLVVRAGL 1093
Query: 579 GGGNDQTTASEPLED 593
G + ++ + L+D
Sbjct: 1094 GAKDGKSMSKTELDD 1108
Score = 172 (65.6 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 58/207 (28%), Positives = 97/207 (46%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAPRSMLLTWEEEFKKWGID--- 158
G I++ G GKT +L FL MK H + +I AP S ++ WE E + W D
Sbjct: 634 GTDAILADEMGLGKTVQSLTFLYTLMKEGHTKGPFLIAAPLSTIINWEREAELWCPDFYV 693
Query: 159 IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEK 218
+ + + + +E+ + +D RG KV I+ ++ + +L SY +
Sbjct: 694 VTYVGDRESRMVIREHE--FSFVDGAVRGGPKVSKIKTLENLKFH----VLLTSY----E 743
Query: 219 LVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
++ D+ +D L V DE H +N+ + FK L + R++L+GTP QNN +EL
Sbjct: 744 CINMDKAILSSIDWAALVV-DEAHRLKNNQSTFFKNLREYNIQYRVLLTGTPLQNNLEEL 802
Query: 279 ENTLSLVRQEFGEVLRTVRKSGREISK 305
+ L+ + + L + EISK
Sbjct: 803 FHLLNFLAPDRFNQLESFTAEFSEISK 829
Score = 48 (22.0 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 343 GTVLQESLPGLRHSVVILQPDEFQK 367
GT LQ +L L H + L PD F +
Sbjct: 792 GTPLQNNLEELFHLLNFLAPDRFNQ 816
>UNIPROTKB|Q22516 [details] [associations]
symbol:chd-3 "Chromodomain-helicase-DNA-binding protein 3
homolog" species:6239 "Caenorhabditis elegans" [GO:0032508 "DNA
duplex unwinding" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003682 GO:GO:0006338 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0001709 GO:GO:0046580
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598 GO:GO:0000118
GeneTree:ENSGT00560000076896 EMBL:AF308444 EMBL:Z67884 EMBL:Z67881
PIR:T20160 RefSeq:NP_510140.1 UniGene:Cel.16950
ProteinModelPortal:Q22516 SMR:Q22516 STRING:Q22516 PaxDb:Q22516
EnsemblMetazoa:T14G8.1 GeneID:181421 KEGG:cel:CELE_T14G8.1
UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1 HOGENOM:HOG000231124
InParanoid:Q22516 OMA:INIIMEL NextBio:913870 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 Uniprot:Q22516
Length = 1787
Score = 193 (73.0 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 60/195 (30%), Positives = 107/195 (54%)
Query: 406 VDSAKLARLKLDPEAGIKT--RFLLI---LLELSTN-EKVLVFSQYIEPLTLIMEQLRHR 459
+++ KL + A IK +F+L+ L +L +VL+FSQ +T++++ L
Sbjct: 920 LEAPKLKNGMYEGSALIKNAGKFVLLQKMLRKLKDGGHRVLIFSQ----MTMMLDILED- 974
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
F EG + +DG ++RQ +I+ N P ++ + L ST+A GINL A V++
Sbjct: 975 FCDVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQFVFLLSTRAGGLGINLATADTVIIY 1034
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK-VWWSNMVFPSSD 578
D WNP + QA SRA+RLGQK V +Y +T ++E +++ A+K + +++V +
Sbjct: 1035 DSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVE-ERITSVAKKKMLLTHLVVRAGL 1093
Query: 579 GGGNDQTTASEPLED 593
G + ++ + L+D
Sbjct: 1094 GAKDGKSMSKTELDD 1108
Score = 172 (65.6 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 58/207 (28%), Positives = 97/207 (46%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAPRSMLLTWEEEFKKWGID--- 158
G I++ G GKT +L FL MK H + +I AP S ++ WE E + W D
Sbjct: 634 GTDAILADEMGLGKTVQSLTFLYTLMKEGHTKGPFLIAAPLSTIINWEREAELWCPDFYV 693
Query: 159 IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEK 218
+ + + + +E+ + +D RG KV I+ ++ + +L SY +
Sbjct: 694 VTYVGDRESRMVIREHE--FSFVDGAVRGGPKVSKIKTLENLKFH----VLLTSY----E 743
Query: 219 LVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
++ D+ +D L V DE H +N+ + FK L + R++L+GTP QNN +EL
Sbjct: 744 CINMDKAILSSIDWAALVV-DEAHRLKNNQSTFFKNLREYNIQYRVLLTGTPLQNNLEEL 802
Query: 279 ENTLSLVRQEFGEVLRTVRKSGREISK 305
+ L+ + + L + EISK
Sbjct: 803 FHLLNFLAPDRFNQLESFTAEFSEISK 829
Score = 48 (22.0 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 343 GTVLQESLPGLRHSVVILQPDEFQK 367
GT LQ +L L H + L PD F +
Sbjct: 792 GTPLQNNLEELFHLLNFLAPDRFNQ 816
>ZFIN|ZDB-GENE-060810-50 [details] [associations]
symbol:rad54b "RAD54 homolog B (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-060810-50 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:BX511010
IPI:IPI00513586 Ensembl:ENSDART00000138496 Bgee:E9QHY4
Uniprot:E9QHY4
Length = 917
Score = 209 (78.6 bits), Expect = 1.7e-23, Sum P(3) = 1.7e-23
Identities = 48/153 (31%), Positives = 85/153 (55%)
Query: 422 IKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRH-RFNWREGQEVLYMDGKQDVKKR 480
+ T L + ++ ++V++ S + + L L+ + + W +DG+ V +R
Sbjct: 651 VLTDLLSAIQHVNRTDRVVLVSNHTQTLDLLQDVCDQIGYKWCR------LDGQTPVGQR 704
Query: 481 QSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQ 540
Q ++ N P S + ++L S+KA G+NL+GAS +VL D+ WNP + QA++R +R GQ
Sbjct: 705 QKIVDSFNSPHSSSFLLLLSSKAGGVGLNLIGASHLVLYDIDWNPANDIQAMARVWRDGQ 764
Query: 541 KRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
K+ VH+Y +T+ ++E +RQ K S V
Sbjct: 765 KKTVHIYRFLTTGSIEEKIYQRQVSKQGLSGTV 797
Score = 109 (43.4 bits), Expect = 1.7e-23, Sum P(3) = 1.7e-23
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 208 ILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILS 267
+L +SY + L S D L LD G+ + DEGH +N + AL+ + RR+IL+
Sbjct: 417 VLVISYEML--LRSVDRLKE--LDF-GVLICDEGHRLKNSNIKTAGALTALSCTRRLILT 471
Query: 268 GTPFQNNFQELENTLSLV 285
GTP QN+ QE + + V
Sbjct: 472 GTPVQNDLQEFYSIIEFV 489
Score = 83 (34.3 bits), Expect = 1.7e-23, Sum P(3) = 1.7e-23
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ+EG F+++ + G G G I++ G GKT + L ++
Sbjct: 310 PHQKEGVVFLYECLMG----------MRLAGRCGAILADEMGLGKTLQCVCVLWTLLRQG 359
Query: 132 PRC-RPV-----IIAPRSMLLTWEEEFKKW 155
P RPV ++ P S++ W EF KW
Sbjct: 360 PYGGRPVMKRALVVCPGSLVKNWAAEFNKW 389
>CGD|CAL0000882 [details] [associations]
symbol:orf19.607 species:5476 "Candida albicans" [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000882 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000108 HOGENOM:HOG000170952 KO:K10841
RefSeq:XP_714234.1 ProteinModelPortal:Q59XB8 STRING:Q59XB8
GeneID:3644142 KEGG:cal:CaO19.607 Uniprot:Q59XB8
Length = 1055
Score = 217 (81.4 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 59/162 (36%), Positives = 85/162 (52%)
Query: 417 DPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MD 472
DP K + L LL L S N K L+F Q + L I+E+ + G + Y MD
Sbjct: 608 DPAKSGKMQVLKNLLRLWQSENHKTLLFCQTRQMLD-ILEKFVANLSLINGGDFNYLRMD 666
Query: 473 GKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531
G + KRQ ++ N DP + L +TK G+NL GA RV++ D WNP + QA
Sbjct: 667 GSTPISKRQMLVDAFNQDPDMH--VFLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDIQA 724
Query: 532 ISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
RA+RLGQKR + +Y L+T+ ++E RQ K + +N +
Sbjct: 725 RERAWRLGQKRDITIYRLMTTGSIEEKIYHRQIFKTFLTNKI 766
Score = 139 (54.0 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 66/233 (28%), Positives = 95/233 (40%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P D+ +F +Q+ +++W EL TGG II G GKT +
Sbjct: 263 LPGDIYPSLFDYQKTCVQWLW----------ELYTQ-KTGG----IIGDEMGLGKTIQII 307
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL +PV ++ P ++L W EF +W + L+ G NG+V+
Sbjct: 308 SFLAGLHYSGLLDKPVLVVVPATVLNQWVNEFHRWWPPLRCIILHS---IGSGMNGSVSE 364
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEK-LVSGDELSGILLD----LP-- 233
+ L+ K + R+ EK V G+ + LP
Sbjct: 365 SKLEEYLESTDPDATQSSLHGIKSQINAQEIVDRVMEKGHVLVTTYVGLRIYSKHILPRE 424
Query: 234 -GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
G V DEGH RN D+ + +IKT RIILSGTP QNN EL + V
Sbjct: 425 WGYVVLDEGHKIRNPDSDISLTCKKIKTVNRIILSGTPIQNNLIELWSLFDFV 477
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 253 (94.1 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
Identities = 90/355 (25%), Positives = 162/355 (45%)
Query: 229 LLDLPGLF-VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
L D+ F V DE H +N+ + + ++ +++ R++++GTP NN +EL + L+ +
Sbjct: 438 LYDIDWFFLVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNNLKELWSLLNFLMP 497
Query: 288 EFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPFVNVHKGTVLQ 347
+ + + E + S IS+ +++ + PF+ ++
Sbjct: 498 KIFD-------NSEEFDNLFNISKIST----NDNKQSEIITQLHTILKPFMLRRLKVEVE 546
Query: 348 ESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCXXXXXXXXXXXXQ--------Q 399
+SLP R + + + QK+L + K+ LN Q
Sbjct: 547 QSLPPKREIYIFVGMSKLQKKLYSDILS-KNIDVLNAMTGSKNQMLNILMQLRKCCNHPY 605
Query: 400 FFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST-NEKVLVFSQYIEPLTLIMEQLRH 458
F+ + + + L +G + +L L N +VL+FSQ L +I + R
Sbjct: 606 LFDGIE-EPPYIEGNHLIETSGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCR- 663
Query: 459 RFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVL 518
W+ L +DG +RQ IN N+P+S+ I L ST+A GINL A V+L
Sbjct: 664 ---WKN-YPYLRIDGSTPGDERQVRINQFNEPNSKYFIFLLSTRAGGIGINLTTADIVIL 719
Query: 519 LDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
D +NP ++ QA+ RA+R+GQK+ V VY +T ++E + R A+K+ +++
Sbjct: 720 FDSDYNPQMDIQAMDRAHRIGQKKRVIVYRFVTQNSVEEKIVERAAKKLKLDSLI 774
Score = 89 (36.4 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP--VIIAPRSMLLTWEEEFKKW 155
NG I++ G GKT L + L Y++ + + +II PRS L W EE KKW
Sbjct: 342 NG-ILADEMGLGKT-LQTISLLCYLRFNKNIKKKSIIICPRSTLDNWYEEIKKW 393
Score = 61 (26.5 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 580 GGND-QTTASEPLEDKILEEMAQLYNNP--SETLINAIIP---QPKETELIETFGEFLNK 633
GG+D Q E L++ LE++ +NN ++ IN +I + K+ E I TF EFL+K
Sbjct: 963 GGHDFQFFNVEKLDE--LEKIEDKWNNYMINQEKINVLIEAQNEEKDYEKIVTFNEFLDK 1020
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 253 (94.1 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
Identities = 90/355 (25%), Positives = 162/355 (45%)
Query: 229 LLDLPGLF-VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
L D+ F V DE H +N+ + + ++ +++ R++++GTP NN +EL + L+ +
Sbjct: 438 LYDIDWFFLVIDEAHRIKNEKSVLSSSVRFLRSENRLLITGTPLHNNLKELWSLLNFLMP 497
Query: 288 EFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPFVNVHKGTVLQ 347
+ + + E + S IS+ +++ + PF+ ++
Sbjct: 498 KIFD-------NSEEFDNLFNISKIST----NDNKQSEIITQLHTILKPFMLRRLKVEVE 546
Query: 348 ESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCXXXXXXXXXXXXQ--------Q 399
+SLP R + + + QK+L + K+ LN Q
Sbjct: 547 QSLPPKREIYIFVGMSKLQKKLYSDILS-KNIDVLNAMTGSKNQMLNILMQLRKCCNHPY 605
Query: 400 FFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST-NEKVLVFSQYIEPLTLIMEQLRH 458
F+ + + + L +G + +L L N +VL+FSQ L +I + R
Sbjct: 606 LFDGIE-EPPYIEGNHLIETSGKMSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCR- 663
Query: 459 RFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVL 518
W+ L +DG +RQ IN N+P+S+ I L ST+A GINL A V+L
Sbjct: 664 ---WKN-YPYLRIDGSTPGDERQVRINQFNEPNSKYFIFLLSTRAGGIGINLTTADIVIL 719
Query: 519 LDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
D +NP ++ QA+ RA+R+GQK+ V VY +T ++E + R A+K+ +++
Sbjct: 720 FDSDYNPQMDIQAMDRAHRIGQKKRVIVYRFVTQNSVEEKIVERAAKKLKLDSLI 774
Score = 89 (36.4 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP--VIIAPRSMLLTWEEEFKKW 155
NG I++ G GKT L + L Y++ + + +II PRS L W EE KKW
Sbjct: 342 NG-ILADEMGLGKT-LQTISLLCYLRFNKNIKKKSIIICPRSTLDNWYEEIKKW 393
Score = 61 (26.5 bits), Expect = 2.9e-23, Sum P(3) = 2.9e-23
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 580 GGND-QTTASEPLEDKILEEMAQLYNNP--SETLINAIIP---QPKETELIETFGEFLNK 633
GG+D Q E L++ LE++ +NN ++ IN +I + K+ E I TF EFL+K
Sbjct: 963 GGHDFQFFNVEKLDE--LEKIEDKWNNYMINQEKINVLIEAQNEEKDYEKIVTFNEFLDK 1020
>UNIPROTKB|F1NH78 [details] [associations]
symbol:F1NH78 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02040929 EMBL:AADN02040930 IPI:IPI00571784
Ensembl:ENSGALT00000023340 ArrayExpress:F1NH78 Uniprot:F1NH78
Length = 1781
Score = 190 (71.9 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 55/172 (31%), Positives = 91/172 (52%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +Q
Sbjct: 974 RVLIFSQMTKMLDLLEDFLEY-----EGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCF 1028
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L ST+A GINL A V++ D WNP + QA SRA+R+GQ + V +Y +T ++E
Sbjct: 1029 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE- 1087
Query: 558 DKLRRQA-RKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSE 608
+++ + A RK+ +++V G + T E L+D + +L+ + E
Sbjct: 1088 ERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQE-LDDILKFGTEELFKDDVE 1138
Score = 172 (65.6 bits), Expect = 3.0e-23, Sum P(2) = 3.0e-23
Identities = 62/208 (29%), Positives = 97/208 (46%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR-PVII-APRSMLLTWEEEFKKWGID-- 158
G I++ G GKT T+VFL + K + P ++ AP S ++ WE EF+ W D
Sbjct: 649 GTDTILADEMGLGKTVQTIVFLYSLYKEQGHSKGPYLVSAPLSTIINWEREFEMWAPDFY 708
Query: 159 IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEK 218
+ Y +K S N + DN R KV R K K +L SY +
Sbjct: 709 VVTYTGDKESRSVIREN-EFSFEDNAIRSGKKV--FRMKKEAQIKFH--VLLTSY----E 759
Query: 219 LVSGDELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQE 277
L++ D+ +L + V DE H +N+ + F+ L+ K +++L+GTP QNN +E
Sbjct: 760 LITIDQ--AVLGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEE 817
Query: 278 LENTLSLVRQEFGEVLRTVRKSGREISK 305
L + L+ + E L + +ISK
Sbjct: 818 LFHLLNFLTPERFNNLEGFLEEFADISK 845
Score = 39 (18.8 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 458 HRFNWREGQ-EVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
H+ N+ E + + L K + R + +N+ DP+ A ++ A
Sbjct: 1697 HKGNYLEMKNKFLARRFKASCRSRAAYLNMTQDPNHPAMLLNA 1739
>UNIPROTKB|F5GWX5 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AC006064
IPI:IPI00000846 HGNC:HGNC:1919 ChiTaRS:CHD4
ProteinModelPortal:F5GWX5 SMR:F5GWX5 PRIDE:F5GWX5
Ensembl:ENST00000544040 UCSC:uc001qpn.3 ArrayExpress:F5GWX5
Bgee:F5GWX5 Uniprot:F5GWX5
Length = 1905
Score = 192 (72.6 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
Identities = 56/167 (33%), Positives = 89/167 (53%)
Query: 406 VDSAKLARLKLDPEAGIKTRFLLILLE-LSTNEK-----VLVFSQYIEPLTLIMEQLRHR 459
+++ K+ D A I+ L+LL+ + N K VL+FSQ + L L+ + L H
Sbjct: 1023 MEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH- 1081
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++
Sbjct: 1082 ----EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIY 1137
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
D WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1138 DSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1183
Score = 168 (64.2 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
Identities = 59/189 (31%), Positives = 89/189 (47%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID--I 159
G I++ G GKT T VFL + Y + H + ++ AP S ++ WE EF+ W D +
Sbjct: 737 GTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYV 796
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K + N + DN RG K R K S K +L SY L
Sbjct: 797 VTYVGDKDSRAIIREN-EFSFEDNAIRGGKKAS--RMKKEASVKFH--VLLTSYELIT-- 849
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ L I D L V DE H +N+ + F+ L+ + +++L+GTP QNN +EL
Sbjct: 850 IDMAILGSI--DWACLIV-DEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 906
Query: 280 NTLSLVRQE 288
+ L+ + E
Sbjct: 907 HLLNFLTPE 915
>UNIPROTKB|E2RHA0 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 EMBL:AAEX03015287 RefSeq:XP_867754.2
Ensembl:ENSCAFT00000023774 GeneID:477714 KEGG:cfa:477714
Uniprot:E2RHA0
Length = 1912
Score = 192 (72.6 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
Identities = 56/167 (33%), Positives = 89/167 (53%)
Query: 406 VDSAKLARLKLDPEAGIKTRFLLILLE-LSTNEK-----VLVFSQYIEPLTLIMEQLRHR 459
+++ K+ D A I+ L+LL+ + N K VL+FSQ + L L+ + L H
Sbjct: 1030 MEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH- 1088
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++
Sbjct: 1089 ----EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIY 1144
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
D WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1145 DSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1190
Score = 168 (64.2 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
Identities = 59/189 (31%), Positives = 89/189 (47%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID--I 159
G I++ G GKT T VFL + Y + H + ++ AP S ++ WE EF+ W D +
Sbjct: 744 GTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYV 803
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K + N + DN RG K R K S K +L SY L
Sbjct: 804 VTYVGDKDSRAIIREN-EFSFEDNAIRGGKKAS--RMKKEASVKFH--VLLTSYELIT-- 856
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ L I D L V DE H +N+ + F+ L+ + +++L+GTP QNN +EL
Sbjct: 857 IDMAILGSI--DWACLIV-DEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 913
Query: 280 NTLSLVRQE 288
+ L+ + E
Sbjct: 914 HLLNFLTPE 922
>UNIPROTKB|Q14839 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005813 "centrosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 EMBL:X86691
EMBL:AC006064 EMBL:BC038596 IPI:IPI00000846 IPI:IPI00455210
RefSeq:NP_001264.2 UniGene:Hs.162233 PDB:1MM2 PDB:1MM3 PDB:2EE1
PDB:2L5U PDB:2L75 PDBsum:1MM2 PDBsum:1MM3 PDBsum:2EE1 PDBsum:2L5U
PDBsum:2L75 ProteinModelPortal:Q14839 SMR:Q14839 DIP:DIP-31183N
IntAct:Q14839 MINT:MINT-349766 STRING:Q14839 PhosphoSite:Q14839
DMDM:311033360 PaxDb:Q14839 PRIDE:Q14839 DNASU:1108
Ensembl:ENST00000309577 Ensembl:ENST00000357008
Ensembl:ENST00000544484 GeneID:1108 KEGG:hsa:1108 UCSC:uc001qpo.3
UCSC:uc001qpp.3 CTD:1108 GeneCards:GC12M006679 H-InvDB:HIX0201859
HGNC:HGNC:1919 HPA:HPA012008 MIM:603277 neXtProt:NX_Q14839
PharmGKB:PA26455 KO:K11643 OMA:ERMLLCR OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EvolutionaryTrace:Q14839 GenomeRNAi:1108 NextBio:4598
PMAP-CutDB:Q14839 ArrayExpress:Q14839 Bgee:Q14839 CleanEx:HS_CHD4
Genevestigator:Q14839 GermOnline:ENSG00000111642 Uniprot:Q14839
Length = 1912
Score = 192 (72.6 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
Identities = 56/167 (33%), Positives = 89/167 (53%)
Query: 406 VDSAKLARLKLDPEAGIKTRFLLILLE-LSTNEK-----VLVFSQYIEPLTLIMEQLRHR 459
+++ K+ D A I+ L+LL+ + N K VL+FSQ + L L+ + L H
Sbjct: 1030 MEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH- 1088
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++
Sbjct: 1089 ----EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIY 1144
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
D WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1145 DSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1190
Score = 168 (64.2 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
Identities = 59/189 (31%), Positives = 89/189 (47%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID--I 159
G I++ G GKT T VFL + Y + H + ++ AP S ++ WE EF+ W D +
Sbjct: 744 GTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYV 803
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K + N + DN RG K R K S K +L SY L
Sbjct: 804 VTYVGDKDSRAIIREN-EFSFEDNAIRGGKKAS--RMKKEASVKFH--VLLTSYELIT-- 856
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ L I D L V DE H +N+ + F+ L+ + +++L+GTP QNN +EL
Sbjct: 857 IDMAILGSI--DWACLIV-DEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 913
Query: 280 NTLSLVRQE 288
+ L+ + E
Sbjct: 914 HLLNFLTPE 922
>UNIPROTKB|F1SLR5 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 OMA:ERMLLCR EMBL:CU914489 EMBL:GACC01000070
RefSeq:XP_003126577.3 UniGene:Ssc.25044 Ensembl:ENSSSCT00000000759
GeneID:100515610 KEGG:ssc:100515610 Uniprot:F1SLR5
Length = 1912
Score = 192 (72.6 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
Identities = 56/167 (33%), Positives = 89/167 (53%)
Query: 406 VDSAKLARLKLDPEAGIKTRFLLILLE-LSTNEK-----VLVFSQYIEPLTLIMEQLRHR 459
+++ K+ D A I+ L+LL+ + N K VL+FSQ + L L+ + L H
Sbjct: 1030 MEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH- 1088
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++
Sbjct: 1089 ----EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIY 1144
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
D WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1145 DSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1190
Score = 168 (64.2 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
Identities = 59/189 (31%), Positives = 89/189 (47%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID--I 159
G I++ G GKT T VFL + Y + H + ++ AP S ++ WE EF+ W D +
Sbjct: 744 GTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYV 803
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K + N + DN RG K R K S K +L SY L
Sbjct: 804 VTYVGDKDSRAIIREN-EFSFEDNAIRGGKKAS--RMKKEASVKFH--VLLTSYELIT-- 856
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ L I D L V DE H +N+ + F+ L+ + +++L+GTP QNN +EL
Sbjct: 857 IDMAILGSI--DWACLIV-DEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 913
Query: 280 NTLSLVRQE 288
+ L+ + E
Sbjct: 914 HLLNFLTPE 922
>MGI|MGI:1344380 [details] [associations]
symbol:Chd4 "chromodomain helicase DNA binding protein 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=ISO;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016818
"hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 MGI:MGI:1344380 Pfam:PF00385
GO:GO:0005524 GO:GO:0005737 GO:GO:0005813 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
GeneTree:ENSGT00560000076896 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
HOVERGEN:HBG005326 CTD:1108 KO:K11643 OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EMBL:BC058578 IPI:IPI00396802 RefSeq:NP_666091.1
UniGene:Mm.333388 ProteinModelPortal:Q6PDQ2 SMR:Q6PDQ2
DIP:DIP-59651N IntAct:Q6PDQ2 STRING:Q6PDQ2 PhosphoSite:Q6PDQ2
PaxDb:Q6PDQ2 PRIDE:Q6PDQ2 Ensembl:ENSMUST00000056889 GeneID:107932
KEGG:mmu:107932 UCSC:uc009dtk.1 NextBio:359735 PMAP-CutDB:Q6PDQ2
Bgee:Q6PDQ2 CleanEx:MM_CHD4 Genevestigator:Q6PDQ2
GermOnline:ENSMUSG00000063870 Uniprot:Q6PDQ2
Length = 1915
Score = 192 (72.6 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
Identities = 56/167 (33%), Positives = 89/167 (53%)
Query: 406 VDSAKLARLKLDPEAGIKTRFLLILLE-LSTNEK-----VLVFSQYIEPLTLIMEQLRHR 459
+++ K+ D A I+ L+LL+ + N K VL+FSQ + L L+ + L H
Sbjct: 1023 MEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH- 1081
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++
Sbjct: 1082 ----EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIY 1137
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
D WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1138 DSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1183
Score = 168 (64.2 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
Identities = 59/189 (31%), Positives = 89/189 (47%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID--I 159
G I++ G GKT T VFL + Y + H + ++ AP S ++ WE EF+ W D +
Sbjct: 737 GTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYV 796
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K + N + DN RG K R K S K +L SY L
Sbjct: 797 VTYVGDKDSRAIIREN-EFSFEDNAIRGGKKAS--RMKKEASVKFH--VLLTSYELIT-- 849
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ L I D L V DE H +N+ + F+ L+ + +++L+GTP QNN +EL
Sbjct: 850 IDMAILGSI--DWACLIV-DEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 906
Query: 280 NTLSLVRQE 288
+ L+ + E
Sbjct: 907 HLLNFLTPE 915
>UNIPROTKB|E9PU01 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI01016558 PRIDE:E9PU01 Ensembl:ENSRNOT00000055970
ArrayExpress:E9PU01 Uniprot:E9PU01
Length = 1915
Score = 192 (72.6 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
Identities = 56/167 (33%), Positives = 89/167 (53%)
Query: 406 VDSAKLARLKLDPEAGIKTRFLLILLE-LSTNEK-----VLVFSQYIEPLTLIMEQLRHR 459
+++ K+ D A I+ L+LL+ + N K VL+FSQ + L L+ + L H
Sbjct: 1023 MEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH- 1081
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++
Sbjct: 1082 ----EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIY 1137
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
D WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1138 DSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1183
Score = 168 (64.2 bits), Expect = 5.5e-23, Sum P(2) = 5.5e-23
Identities = 59/189 (31%), Positives = 89/189 (47%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID--I 159
G I++ G GKT T VFL + Y + H + ++ AP S ++ WE EF+ W D +
Sbjct: 737 GTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYV 796
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K + N + DN RG K R K S K +L SY L
Sbjct: 797 VTYVGDKDSRAIIREN-EFSFEDNAIRGGKKAS--RMKKEASVKFH--VLLTSYELIT-- 849
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ L I D L V DE H +N+ + F+ L+ + +++L+GTP QNN +EL
Sbjct: 850 IDMAILGSI--DWACLIV-DEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 906
Query: 280 NTLSLVRQE 288
+ L+ + E
Sbjct: 907 HLLNFLTPE 915
>UNIPROTKB|J9NW81 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:AAEX03015287 Ensembl:ENSCAFT00000048002
Uniprot:J9NW81
Length = 1932
Score = 192 (72.6 bits), Expect = 5.7e-23, Sum P(2) = 5.7e-23
Identities = 56/167 (33%), Positives = 89/167 (53%)
Query: 406 VDSAKLARLKLDPEAGIKTRFLLILLE-LSTNEK-----VLVFSQYIEPLTLIMEQLRHR 459
+++ K+ D A I+ L+LL+ + N K VL+FSQ + L L+ + L H
Sbjct: 1050 MEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH- 1108
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++
Sbjct: 1109 ----EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIY 1164
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
D WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1165 DSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1210
Score = 168 (64.2 bits), Expect = 5.7e-23, Sum P(2) = 5.7e-23
Identities = 59/189 (31%), Positives = 89/189 (47%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID--I 159
G I++ G GKT T VFL + Y + H + ++ AP S ++ WE EF+ W D +
Sbjct: 764 GTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYV 823
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K + N + DN RG K R K S K +L SY L
Sbjct: 824 VTYVGDKDSRAIIREN-EFSFEDNAIRGGKKAS--RMKKEASVKFH--VLLTSYELIT-- 876
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ L I D L V DE H +N+ + F+ L+ + +++L+GTP QNN +EL
Sbjct: 877 IDMAILGSI--DWACLIV-DEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 933
Query: 280 NTLSLVRQE 288
+ L+ + E
Sbjct: 934 HLLNFLTPE 942
>UNIPROTKB|F1N3F6 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:DAAA02014463 IPI:IPI00877578
Ensembl:ENSBTAT00000019612 ArrayExpress:F1N3F6 Uniprot:F1N3F6
Length = 1934
Score = 192 (72.6 bits), Expect = 5.7e-23, Sum P(2) = 5.7e-23
Identities = 56/167 (33%), Positives = 89/167 (53%)
Query: 406 VDSAKLARLKLDPEAGIKTRFLLILLE-LSTNEK-----VLVFSQYIEPLTLIMEQLRHR 459
+++ K+ D A I+ L+LL+ + N K VL+FSQ + L L+ + L H
Sbjct: 1052 MEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH- 1110
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++
Sbjct: 1111 ----EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIY 1166
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
D WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1167 DSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1212
Score = 168 (64.2 bits), Expect = 5.7e-23, Sum P(2) = 5.7e-23
Identities = 59/189 (31%), Positives = 89/189 (47%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID--I 159
G I++ G GKT T VFL + Y + H + ++ AP S ++ WE EF+ W D +
Sbjct: 766 GTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYV 825
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K + N + DN RG K R K S K +L SY L
Sbjct: 826 VTYVGDKDSRAIIREN-EFSFEDNAIRGGKKAS--RMKKEASVKFH--VLLTSYELIT-- 878
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ L I D L V DE H +N+ + F+ L+ + +++L+GTP QNN +EL
Sbjct: 879 IDMAILGSI--DWACLIV-DEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 935
Query: 280 NTLSLVRQE 288
+ L+ + E
Sbjct: 936 HLLNFLTPE 944
>UNIPROTKB|F1LM59 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00365698 PRIDE:F1LM59 Ensembl:ENSRNOT00000024864
ArrayExpress:F1LM59 Uniprot:F1LM59
Length = 1945
Score = 192 (72.6 bits), Expect = 5.7e-23, Sum P(2) = 5.7e-23
Identities = 56/167 (33%), Positives = 89/167 (53%)
Query: 406 VDSAKLARLKLDPEAGIKTRFLLILLE-LSTNEK-----VLVFSQYIEPLTLIMEQLRHR 459
+++ K+ D A I+ L+LL+ + N K VL+FSQ + L L+ + L H
Sbjct: 1051 MEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH- 1109
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++
Sbjct: 1110 ----EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIY 1165
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
D WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1166 DSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1211
Score = 168 (64.2 bits), Expect = 5.7e-23, Sum P(2) = 5.7e-23
Identities = 59/189 (31%), Positives = 89/189 (47%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID--I 159
G I++ G GKT T VFL + Y + H + ++ AP S ++ WE EF+ W D +
Sbjct: 765 GTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYV 824
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K + N + DN RG K R K S K +L SY L
Sbjct: 825 VTYVGDKDSRAIIREN-EFSFEDNAIRGGKKAS--RMKKEASVKFH--VLLTSYELIT-- 877
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ L I D L V DE H +N+ + F+ L+ + +++L+GTP QNN +EL
Sbjct: 878 IDMAILGSI--DWACLIV-DEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELF 934
Query: 280 NTLSLVRQE 288
+ L+ + E
Sbjct: 935 HLLNFLTPE 943
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 212 (79.7 bits), Expect = 7.5e-23, Sum P(3) = 7.5e-23
Identities = 51/136 (37%), Positives = 77/136 (56%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ +T +++ L WR E +DG+ +RQ SIN N+P+S +
Sbjct: 500 RVLIFSQ----MTRVLDILEDYCMWRN-YEYCRLDGQTPHDERQDSINAYNEPNSTKFVF 554
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
+ ST+A GINL A V+L D WNP V+ QA+ RA+R+GQ + V V+ IT T+E
Sbjct: 555 MLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEE 614
Query: 558 DKLRRQARKVWWSNMV 573
+ R K+ ++V
Sbjct: 615 RIVERAEMKLRLDSIV 630
Score = 96 (38.9 bits), Expect = 7.5e-23, Sum P(3) = 7.5e-23
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
V DE H +N+ + + + + KT R++L+GTP QNN EL + L+ +
Sbjct: 305 VIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFL 353
Score = 89 (36.4 bits), Expect = 7.5e-23, Sum P(3) = 7.5e-23
Identities = 35/105 (33%), Positives = 47/105 (44%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP---VIIAPRSMLLTWEEEFKKWGID 158
G NG I++ G GKT L + L YMK H R P +++ P+S L W EFK+W
Sbjct: 197 GING-ILADEMGLGKT-LQTISLLGYMK-HYRNIPGPHMVLVPKSTLHNWMSEFKRW--- 250
Query: 159 IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWK 203
+P L L G + A + D G V + Y L K
Sbjct: 251 VP--TLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEK 293
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 212 (79.7 bits), Expect = 7.5e-23, Sum P(3) = 7.5e-23
Identities = 51/136 (37%), Positives = 77/136 (56%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ +T +++ L WR E +DG+ +RQ SIN N+P+S +
Sbjct: 501 RVLIFSQ----MTRVLDILEDYCMWRN-YEYCRLDGQTPHDERQDSINAYNEPNSTKFVF 555
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
+ ST+A GINL A V+L D WNP V+ QA+ RA+R+GQ + V V+ IT T+E
Sbjct: 556 MLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEE 615
Query: 558 DKLRRQARKVWWSNMV 573
+ R K+ ++V
Sbjct: 616 RIVERAEMKLRLDSIV 631
Score = 96 (38.9 bits), Expect = 7.5e-23, Sum P(3) = 7.5e-23
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
V DE H +N+ + + + + KT R++L+GTP QNN EL + L+ +
Sbjct: 306 VIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFL 354
Score = 89 (36.4 bits), Expect = 7.5e-23, Sum P(3) = 7.5e-23
Identities = 35/105 (33%), Positives = 47/105 (44%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP---VIIAPRSMLLTWEEEFKKWGID 158
G NG I++ G GKT L + L YMK H R P +++ P+S L W EFK+W
Sbjct: 198 GING-ILADEMGLGKT-LQTISLLGYMK-HYRNIPGPHMVLVPKSTLHNWMSEFKRW--- 251
Query: 159 IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWK 203
+P L L G + A + D G V + Y L K
Sbjct: 252 VP--TLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEK 294
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 212 (79.7 bits), Expect = 8.4e-23, Sum P(4) = 8.4e-23
Identities = 51/136 (37%), Positives = 77/136 (56%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ +T +++ L WR E +DG+ +RQ SIN N+P+S +
Sbjct: 500 RVLIFSQ----MTRVLDILEDYCMWRN-YEYCRLDGQTPHDERQDSINAYNEPNSTKFVF 554
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
+ ST+A GINL A V+L D WNP V+ QA+ RA+R+GQ + V V+ IT T+E
Sbjct: 555 MLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEE 614
Query: 558 DKLRRQARKVWWSNMV 573
+ R K+ ++V
Sbjct: 615 RIVERAEMKLRLDSIV 630
Score = 96 (38.9 bits), Expect = 8.4e-23, Sum P(4) = 8.4e-23
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
V DE H +N+ + + + + KT R++L+GTP QNN EL + L+ +
Sbjct: 305 VIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFL 353
Score = 92 (37.4 bits), Expect = 8.4e-23, Sum P(4) = 8.4e-23
Identities = 36/105 (34%), Positives = 47/105 (44%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP---VIIAPRSMLLTWEEEFKKWGID 158
G NG I++ G GKT L + L YMK H R P +++ P+S L W EFKKW
Sbjct: 197 GING-ILADEMGLGKT-LQTISLLGYMK-HYRNIPGPHMVLVPKSTLHNWMSEFKKW--- 250
Query: 159 IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWK 203
+P L L G + A + D G V + Y L K
Sbjct: 251 VP--TLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEK 293
Score = 38 (18.4 bits), Expect = 8.4e-23, Sum P(4) = 8.4e-23
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 588 SEPLEDKILEEMAQL 602
+EPL D+ LEE +L
Sbjct: 822 AEPLNDEELEEKEKL 836
>TAIR|locus:2173644 [details] [associations]
symbol:CHR1 "chromatin remodeling 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006349
"regulation of gene expression by genetic imprinting" evidence=IMP]
[GO:0044030 "regulation of DNA methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000786 "nucleosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0090241 "negative regulation of
histone H4 acetylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0009294 "DNA mediated transformation"
evidence=IMP] [GO:0032197 "transposition, RNA-mediated"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP;RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0004003 GO:GO:0006349 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009294
EMBL:AB018119 GO:GO:0000786 GO:GO:0051574 GO:GO:0044030
GO:GO:0090241 GO:GO:0032197 EMBL:AF143940 EMBL:AY099638
EMBL:BT002161 EMBL:AY699010 EMBL:AY699011 IPI:IPI00524705
RefSeq:NP_201476.1 UniGene:At.28851 ProteinModelPortal:Q9XFH4
SMR:Q9XFH4 STRING:Q9XFH4 PaxDb:Q9XFH4 PRIDE:Q9XFH4
EnsemblPlants:AT5G66750.1 GeneID:836808 KEGG:ath:AT5G66750
TAIR:At5g66750 HOGENOM:HOG000172362 InParanoid:Q9XFH4 OMA:ETFYTAI
PhylomeDB:Q9XFH4 ProtClustDB:CLSN2686877 Genevestigator:Q9XFH4
GO:GO:0006344 GO:GO:0006346 Uniprot:Q9XFH4
Length = 764
Score = 226 (84.6 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 61/199 (30%), Positives = 104/199 (52%)
Query: 427 LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINV 486
LL+ L + N KVL+FSQ+ T +++ + + F+ +G EV +DG + +R+ I
Sbjct: 532 LLVRL-FANNHKVLIFSQW----TKLLDIMDYYFS-EKGFEVCRIDGSVKLDERRRQIKD 585
Query: 487 LNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHV 546
+D S I L ST+A GINL A +L D WNP ++ QA+ R +R+GQ + VHV
Sbjct: 586 FSDEKSSCSIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHV 645
Query: 547 YHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNP 606
Y L T++++E L+R K+ ++V ++ +S PLE++ + + +
Sbjct: 646 YRLSTAQSIETRVLKRAYSKLKLEHVVIGQGQFH-QERAKSSTPLEEEDILALLKEDETA 704
Query: 607 SETLINAIIPQPKETELIE 625
+ LI I L++
Sbjct: 705 EDKLIQTDISDADLDRLLD 723
Score = 101 (40.6 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 220 VSGDELSGILLDLPGLFV-FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
V+ ++ IL P +V DEGH +N + + L +K +++L+GTP QNN EL
Sbjct: 313 VAMNDAKRILRHYPWKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSEL 372
Query: 279 ENTLSLV 285
+ L+ +
Sbjct: 373 WSLLNFI 379
Score = 61 (26.5 bits), Expect = 1.2e-22, Sum P(3) = 1.2e-22
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKW 155
G NG I++ G GKT T+ FL +++K + P ++IAP S L W E ++
Sbjct: 220 GLNG-ILADQMGLGKTIQTIGFL-SHLKGNGLDGPYLVIAPLSTLSNWFNEIARF 272
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 212 (79.7 bits), Expect = 1.7e-22, Sum P(4) = 1.7e-22
Identities = 51/136 (37%), Positives = 77/136 (56%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ +T +++ L WR E +DG+ +RQ SIN N+P+S +
Sbjct: 501 RVLIFSQ----MTRVLDILEDYCMWRN-YEYCRLDGQTPHDERQESINAYNEPNSTKFVF 555
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
+ ST+A GINL A V+L D WNP V+ QA+ RA+R+GQ + V V+ IT T+E
Sbjct: 556 MLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEE 615
Query: 558 DKLRRQARKVWWSNMV 573
+ R K+ ++V
Sbjct: 616 RIVERAEMKLRLDSIV 631
Score = 96 (38.9 bits), Expect = 1.7e-22, Sum P(4) = 1.7e-22
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
V DE H +N+ + + + + KT R++L+GTP QNN EL + L+ +
Sbjct: 306 VIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFL 354
Score = 89 (36.4 bits), Expect = 1.7e-22, Sum P(4) = 1.7e-22
Identities = 35/105 (33%), Positives = 47/105 (44%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP---VIIAPRSMLLTWEEEFKKWGID 158
G NG I++ G GKT L + L YMK H R P +++ P+S L W EFK+W
Sbjct: 198 GING-ILADEMGLGKT-LQTISLLGYMK-HYRNIPGPHMVLVPKSTLHNWMSEFKRW--- 251
Query: 159 IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWK 203
+P L L G + A + D G V + Y L K
Sbjct: 252 VP--TLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEK 294
Score = 47 (21.6 bits), Expect = 3.1e-18, Sum P(4) = 3.1e-18
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 96 NSTSTGGGNGCIISHAPGTGKTGLT 120
NS++ GG G AP G G T
Sbjct: 30 NSSNKGGPEGVAAQGAPSVGNAGPT 54
Score = 38 (18.4 bits), Expect = 1.7e-22, Sum P(4) = 1.7e-22
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 588 SEPLEDKILEEMAQL 602
+EPL D+ LEE +L
Sbjct: 823 AEPLNDEELEEKEKL 837
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 212 (79.7 bits), Expect = 1.7e-22, Sum P(4) = 1.7e-22
Identities = 51/136 (37%), Positives = 77/136 (56%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ +T +++ L WR E +DG+ +RQ SIN N+P+S +
Sbjct: 501 RVLIFSQ----MTRVLDILEDYCMWRN-YEYCRLDGQTPHDERQESINAYNEPNSTKFVF 555
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
+ ST+A GINL A V+L D WNP V+ QA+ RA+R+GQ + V V+ IT T+E
Sbjct: 556 MLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEE 615
Query: 558 DKLRRQARKVWWSNMV 573
+ R K+ ++V
Sbjct: 616 RIVERAEMKLRLDSIV 631
Score = 96 (38.9 bits), Expect = 1.7e-22, Sum P(4) = 1.7e-22
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
V DE H +N+ + + + + KT R++L+GTP QNN EL + L+ +
Sbjct: 306 VIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFL 354
Score = 89 (36.4 bits), Expect = 1.7e-22, Sum P(4) = 1.7e-22
Identities = 35/105 (33%), Positives = 47/105 (44%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP---VIIAPRSMLLTWEEEFKKWGID 158
G NG I++ G GKT L + L YMK H R P +++ P+S L W EFK+W
Sbjct: 198 GING-ILADEMGLGKT-LQTISLLGYMK-HYRNIPGPHMVLVPKSTLHNWMSEFKRW--- 251
Query: 159 IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWK 203
+P L L G + A + D G V + Y L K
Sbjct: 252 VP--TLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEK 294
Score = 38 (18.4 bits), Expect = 1.7e-22, Sum P(4) = 1.7e-22
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 588 SEPLEDKILEEMAQL 602
+EPL D+ LEE +L
Sbjct: 823 AEPLNDEELEEKEKL 837
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 212 (79.7 bits), Expect = 1.7e-22, Sum P(4) = 1.7e-22
Identities = 51/136 (37%), Positives = 77/136 (56%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ +T +++ L WR E +DG+ +RQ SIN N+P+S +
Sbjct: 501 RVLIFSQ----MTRVLDILEDYCMWRN-YEYCRLDGQTPHDERQESINAYNEPNSTKFVF 555
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
+ ST+A GINL A V+L D WNP V+ QA+ RA+R+GQ + V V+ IT T+E
Sbjct: 556 MLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEE 615
Query: 558 DKLRRQARKVWWSNMV 573
+ R K+ ++V
Sbjct: 616 RIVERAEMKLRLDSIV 631
Score = 96 (38.9 bits), Expect = 1.7e-22, Sum P(4) = 1.7e-22
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
V DE H +N+ + + + + KT R++L+GTP QNN EL + L+ +
Sbjct: 306 VIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFL 354
Score = 89 (36.4 bits), Expect = 1.7e-22, Sum P(4) = 1.7e-22
Identities = 35/105 (33%), Positives = 47/105 (44%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP---VIIAPRSMLLTWEEEFKKWGID 158
G NG I++ G GKT L + L YMK H R P +++ P+S L W EFK+W
Sbjct: 198 GING-ILADEMGLGKT-LQTISLLGYMK-HYRNIPGPHMVLVPKSTLHNWMSEFKRW--- 251
Query: 159 IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWK 203
+P L L G + A + D G V + Y L K
Sbjct: 252 VP--TLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEK 294
Score = 38 (18.4 bits), Expect = 1.7e-22, Sum P(4) = 1.7e-22
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 588 SEPLEDKILEEMAQL 602
+EPL D+ LEE +L
Sbjct: 823 AEPLNDEELEEKEKL 837
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 212 (79.7 bits), Expect = 1.9e-22, Sum P(3) = 1.9e-22
Identities = 57/160 (35%), Positives = 92/160 (57%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ +T +++ L WR G E +DG+ ++R+ +I+ N P+S I
Sbjct: 428 RVLLFSQ----MTRLLDILEDYCMWR-GYEYCRLDGQTPHEEREEAIDTFNAPNSSKFIF 482
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
+ ST+A GINL A V+L D WNP V+ QA+ RA+R+GQK+ V V+ LIT T+E
Sbjct: 483 MLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEE 542
Query: 558 DKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILE 597
+ R K+ ++V G DQ + ++ +D++L+
Sbjct: 543 RIVERAEIKLRLDSIVI--QQGRLIDQQS-NKLAKDEMLQ 579
Score = 93 (37.8 bits), Expect = 1.9e-22, Sum P(3) = 1.9e-22
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
V DE H +N+ + + + + KT R++L+GTP QNN EL
Sbjct: 233 VIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHEL 274
Score = 87 (35.7 bits), Expect = 1.9e-22, Sum P(3) = 1.9e-22
Identities = 32/98 (32%), Positives = 47/98 (47%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP---VIIAPRSMLLTWEEEFKKWGID 158
G NG I++ G GKT T+ L Y+K H R P +++ P+S L W EFK+W
Sbjct: 125 GVNG-ILADEMGLGKTLQTIALL-GYLK-HYRNIPGPHMVLVPKSTLHNWMNEFKRW--- 178
Query: 159 IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRY 196
+P +L L G ++ A + D G V + Y
Sbjct: 179 VP--SLRAVCLIGDKDARAAFIRDVMMPGEWDVCVTSY 214
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 209 (78.6 bits), Expect = 2.4e-22, Sum P(3) = 2.4e-22
Identities = 55/154 (35%), Positives = 84/154 (54%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ +T +++ L WR +DG+ ++RQ SIN N+P+S +
Sbjct: 484 RVLIFSQ----MTRVLDILEDYCMWRN-YGYCRLDGQTPHEERQISINAFNEPNSSKFLF 538
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
+ ST+A GINL A V++ D WNP V+ QA+ RA+R+GQK+ V V+ IT T+E
Sbjct: 539 MLSTRAGGLGINLATADVVIIYDSDWNPQVDLQAMDRAHRIGQKKQVRVFRFITDNTVEE 598
Query: 558 D-------KLRRQARKVWWSNMVFPSSDGGGNDQ 584
KLR + + +V PS + G D+
Sbjct: 599 RIVERAEMKLRLDSIVIQQGRLVDPSMNKLGKDE 632
Score = 93 (37.8 bits), Expect = 2.4e-22, Sum P(3) = 2.4e-22
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
V DE H +N+ + + + + KT R++L+GTP QNN EL
Sbjct: 289 VIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHEL 330
Score = 90 (36.7 bits), Expect = 2.4e-22, Sum P(3) = 2.4e-22
Identities = 24/57 (42%), Positives = 32/57 (56%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP---VIIAPRSMLLTWEEEFKKW 155
G NG I++ G GKT L + L YMK H R P +++ P+S L W EFK+W
Sbjct: 181 GING-ILADEMGLGKT-LQTISLLGYMK-HYRNIPGPHMVLVPKSTLYNWMNEFKRW 234
>TAIR|locus:2024198 [details] [associations]
symbol:SWI2 "switch 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016020 "membrane"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0016020 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HGNRKDN
IPI:IPI00529418 RefSeq:NP_171871.2 UniGene:At.42525
UniGene:At.42526 ProteinModelPortal:F4I2H2 SMR:F4I2H2 PRIDE:F4I2H2
EnsemblPlants:AT1G03750.1 GeneID:839417 KEGG:ath:AT1G03750
Uniprot:F4I2H2
Length = 862
Score = 197 (74.4 bits), Expect = 2.6e-22, Sum P(4) = 2.6e-22
Identities = 53/141 (37%), Positives = 78/141 (55%)
Query: 433 LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPS 491
+S +K+L+FS + L ++ +F R+G +DG RQS ++ N PS
Sbjct: 541 ISKGDKILLFSYSVRMLDIL-----EKFLIRKGYSFARLDGSTPTNLRQSLVDDFNASPS 595
Query: 492 SQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLIT 551
Q + L STKA G+NLV A+RVV+ D WNP + QA R++R GQKR V V+ L++
Sbjct: 596 KQ--VFLISTKAGGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRYGQKRHVVVFRLLS 653
Query: 552 SETLEWDKLRRQARKVWWSNM 572
+ +LE RQ K SN+
Sbjct: 654 AGSLEELVYTRQVYKQQLSNI 674
Score = 106 (42.4 bits), Expect = 2.6e-22, Sum P(4) = 2.6e-22
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 205 GTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRI 264
G +L S+ F + G LSGI ++ + DE H +N+ + +++A IKT++RI
Sbjct: 245 GVEVLVTSFDTFR--IQGPVLSGINWEI---VIADEAHRLKNEKSKLYEACLEIKTKKRI 299
Query: 265 ILSGTPFQNNFQELENTLSLV 285
L+GT QN EL N V
Sbjct: 300 GLTGTVMQNKISELFNLFEWV 320
Score = 90 (36.7 bits), Expect = 2.6e-22, Sum P(4) = 2.6e-22
Identities = 35/105 (33%), Positives = 49/105 (46%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
VP + ++ HQREG +F++ N+ KN+ +G I+ G GKT T+
Sbjct: 131 VPASINCRLLEHQREGVKFMY-NL--------YKNN------HGGILGDDMGLGKTIQTI 175
Query: 122 VFLQA-YMK---------LHPRCRPV-IIAPRSMLLTWEEEFKKW 155
FL A Y K L PV II P S++ WE EF +W
Sbjct: 176 AFLAAVYGKDGDAGESCLLESDKGPVLIICPSSIIHNWESEFSRW 220
Score = 37 (18.1 bits), Expect = 2.6e-22, Sum P(4) = 2.6e-22
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 591 LEDKILEEMAQLYNNPSETLIN 612
+E IL+++ +Y + +E +IN
Sbjct: 756 MEKPILKDLGIVYAHRNEDIIN 777
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 213 (80.0 bits), Expect = 3.2e-22, Sum P(4) = 3.2e-22
Identities = 49/119 (41%), Positives = 72/119 (60%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ +T +++ L WR G E +DG+ ++R+ +I N P+S I
Sbjct: 507 RVLIFSQ----MTRLLDILEDYCMWR-GYEYCRLDGQTPHEEREEAIEAFNVPNSSRFIF 561
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
+ ST+A GINL A V+L D WNP V+ QA+ RA+R+GQK+ V V+ LIT T+E
Sbjct: 562 MLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVE 620
Score = 89 (36.4 bits), Expect = 3.2e-22, Sum P(4) = 3.2e-22
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
V DE H +N+ + + + + K+ R++L+GTP QNN EL
Sbjct: 312 VIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHEL 353
Score = 86 (35.3 bits), Expect = 3.2e-22, Sum P(4) = 3.2e-22
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP---VIIAPRSMLLTWEEEFKKW 155
G NG I++ G GKT T+ L Y+K H R P +++ P+S L W EFK+W
Sbjct: 204 GVNG-ILADEMGLGKTLQTIALL-GYLK-HYRNIPGPHMVLVPKSTLHNWMNEFKRW 257
Score = 37 (18.1 bits), Expect = 3.2e-22, Sum P(4) = 3.2e-22
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 296 VRKSGREISKAKHASLISSIGRCANH 321
V S ++ K + +++ + +C NH
Sbjct: 440 VLNSAGKMDKMRLLNILMQLRKCCNH 465
>TIGR_CMR|BA_5487 [details] [associations]
symbol:BA_5487 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000099451 InterPro:IPR022138 Pfam:PF12419
RefSeq:NP_847649.1 RefSeq:YP_022153.1 RefSeq:YP_031335.1
ProteinModelPortal:Q81K50 IntAct:Q81K50 DNASU:1085116
EnsemblBacteria:EBBACT00000010571 EnsemblBacteria:EBBACT00000018432
EnsemblBacteria:EBBACT00000022093 GeneID:1085116 GeneID:2819120
GeneID:2852260 KEGG:ban:BA_5487 KEGG:bar:GBAA_5487 KEGG:bat:BAS5096
OMA:ASTIYEF ProtClustDB:CLSK888016
BioCyc:BANT260799:GJAJ-5171-MONOMER
BioCyc:BANT261594:GJ7F-5349-MONOMER Uniprot:Q81K50
Length = 918
Score = 230 (86.0 bits), Expect = 3.3e-22, Sum P(3) = 3.3e-22
Identities = 63/161 (39%), Positives = 86/161 (53%)
Query: 419 EAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQD 476
E +KT L+ L+E NE L+F+QYI ++ L F GQ VL+++G
Sbjct: 747 ERSMKTSTLMELIENIKDQNESCLIFTQYIGMGNMLKNVLEEHF----GQRVLFLNGSVP 802
Query: 477 VKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAY 536
K+R I + + I + S KA G+NL A+ V+ D WNP VE QA RAY
Sbjct: 803 KKERDKMIEQFQNGTYD--IFILSLKAGGTGLNLTAANHVIHYDRWWNPAVENQATDRAY 860
Query: 537 RLGQKRVVHVYHLITSETLEWDKLRRQA-RKVWWSNMVFPS 576
R+GQKR VHV+ LIT+ TLE +K+ RK +N V S
Sbjct: 861 RIGQKRFVHVHKLITTGTLE-EKIDEMLERKQSLNNAVITS 900
Score = 85 (35.0 bits), Expect = 3.3e-22, Sum P(3) = 3.3e-22
Identities = 27/107 (25%), Positives = 47/107 (43%)
Query: 212 SYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPF 271
SY L + + +ELS + D + DE +N T KA+ ++ +I L+GTP
Sbjct: 555 SYALAQ--LDEEELSTLCWDA---VILDEAQNIKNPHTKQSKAVRNLQANHKIALTGTPM 609
Query: 272 QNNFQELENTLSLVRQEF-GEVLRTVRKSGREISKAKHASLISSIGR 317
+N EL + + + G + + R+ I K + I + R
Sbjct: 610 ENRLAELWSIFDFINHGYLGSLGQFQRRFVSPIEKDRDEGKIQQVQR 656
Score = 72 (30.4 bits), Expect = 3.3e-22, Sum P(3) = 3.3e-22
Identities = 16/54 (29%), Positives = 33/54 (61%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKW 155
G G +++ G GK+ T+ +L + + + P +I+AP S+L W++EF+++
Sbjct: 469 GFGALLADDMGLGKSIQTITYLLYIKENNLQTGPALIVAPTSVLGNWQKEFERF 522
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 213 (80.0 bits), Expect = 3.3e-22, Sum P(5) = 3.3e-22
Identities = 51/136 (37%), Positives = 77/136 (56%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ +T +++ L WR E +DG+ +RQ+SIN N+P S +
Sbjct: 486 RVLIFSQ----MTRVLDILEDYCMWRN-YEYCRLDGQTPHDERQASINAYNEPGSSKFVF 540
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
+ ST+A GINL A V+L D WNP V+ QA+ RA+R+GQ + V V+ IT T+E
Sbjct: 541 MLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEE 600
Query: 558 DKLRRQARKVWWSNMV 573
+ R K+ ++V
Sbjct: 601 RIVERAEMKLRLDSIV 616
Score = 93 (37.8 bits), Expect = 3.3e-22, Sum P(5) = 3.3e-22
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
V DE H +N+ + + + + KT R++L+GTP QNN EL
Sbjct: 291 VIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHEL 332
Score = 89 (36.4 bits), Expect = 3.3e-22, Sum P(5) = 3.3e-22
Identities = 35/105 (33%), Positives = 48/105 (45%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP---VIIAPRSMLLTWEEEFKKWGID 158
G NG I++ G GKT L + L YMK H R P +++ P+S L W EFK+W
Sbjct: 183 GING-ILADEMGLGKT-LQTISLLGYMK-HYRNIPGPHMVLVPKSTLHNWMNEFKRW--- 236
Query: 159 IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWK 203
+P L L G ++ A + D G V + Y L K
Sbjct: 237 VP--TLRAVCLIGDKDQRAAFVRDVLLPGEWDVCVTSYEMLIKEK 279
Score = 38 (18.4 bits), Expect = 3.3e-22, Sum P(5) = 3.3e-22
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 588 SEPLEDKILEEMAQL 602
+EPL D+ LEE +L
Sbjct: 808 AEPLNDEELEEKEKL 822
Score = 37 (18.1 bits), Expect = 3.3e-22, Sum P(5) = 3.3e-22
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 296 VRKSGREISKAKHASLISSIGRCANH 321
+ S ++ K + +++ + +C NH
Sbjct: 419 ILNSAGKLDKMRLLNILMQLRKCCNH 444
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 207 (77.9 bits), Expect = 5.7e-22, Sum P(4) = 5.7e-22
Identities = 51/136 (37%), Positives = 78/136 (57%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ +T +++ L WR G E +DG + R+ +I+ N P+S I
Sbjct: 463 RVLIFSQ----MTRVLDILEDYCMWR-GFEYCRLDGNTPHEAREQAIDAFNAPNSSKFIF 517
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
+ ST+A GINL A V+L D WNP V+ QA+ RA+R+GQ++ V V+ LIT T+E
Sbjct: 518 MLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQRKPVKVFRLITDNTVEE 577
Query: 558 DKLRRQARKVWWSNMV 573
+ R K+ ++V
Sbjct: 578 RIVERAEMKLRLDSIV 593
Score = 94 (38.1 bits), Expect = 5.7e-22, Sum P(4) = 5.7e-22
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
V DE H +N+ + + + KT R++L+GTP QNN EL + L+ +
Sbjct: 269 VIDEAHRIKNEKSKLSEIAREFKTTNRLLLTGTPLQNNLHELWSLLNFL 317
Score = 88 (36.0 bits), Expect = 5.7e-22, Sum P(4) = 5.7e-22
Identities = 32/98 (32%), Positives = 46/98 (46%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP---VIIAPRSMLLTWEEEFKKWGID 158
G NG I++ G GKT T+ L Y+K H R P +++ P+S L W EFK+W
Sbjct: 161 GING-ILADEMGLGKTLQTIALL-GYLK-HYRNIPGPHMVLVPKSTLHNWMNEFKRW--- 214
Query: 159 IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRY 196
+P L L G ++ A + D G V + Y
Sbjct: 215 VP--TLKAVCLIGNKDERAAFIRDVMMPGEWDVCVTSY 250
Score = 41 (19.5 bits), Expect = 5.7e-22, Sum P(4) = 5.7e-22
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 8 DPPFATSPSRRAEWREYNNVDPSF 31
DPPF P +A +E + DP +
Sbjct: 21 DPPFLLGPPPKAVVKE-SLADPEY 43
>UNIPROTKB|F1RN66 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000015489
Uniprot:F1RN66
Length = 1794
Score = 192 (72.6 bits), Expect = 5.7e-22, Sum P(3) = 5.7e-22
Identities = 63/200 (31%), Positives = 99/200 (49%)
Query: 427 LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSIN 485
LLI L N +VL+FSQ + L ++ E L++R F ++ +DG + R+ +++
Sbjct: 790 LLIRLRERGN-RVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALD 842
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
N S+ L ST+A GINL A VV+ D WNP + QA +RA+R G V+
Sbjct: 843 HFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVN 902
Query: 546 VYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT-TASEPLEDKIL--EEMAQL 602
+Y L+T ++E D L R +K+ ++V D G T S P EE++ +
Sbjct: 903 IYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAI 962
Query: 603 YNNPSETLINAIIPQPKETE 622
+E L P+ +E E
Sbjct: 963 LKFGAEELFKE--PEGEEQE 980
Score = 111 (44.1 bits), Expect = 5.7e-22, Sum P(3) = 5.7e-22
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FG--EVLRT 295
DE H +NDD+ ++K L K+ R++++GTP QN+ +EL + L + E F E
Sbjct: 608 DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE 667
Query: 296 VRKSGREISKAK-HASL 311
GRE A H L
Sbjct: 668 EHGKGREYGYASLHKEL 684
Score = 95 (38.5 bits), Expect = 5.7e-22, Sum P(3) = 5.7e-22
Identities = 40/145 (27%), Positives = 59/145 (40%)
Query: 15 PSRRAEWREYNNVDPSFLDDLNSRDSGFDSQTGCDPFTHAQGTVWELVPRDVRKKMFPHQ 74
P W + + F ++ S S+T PF + V + PR V K P
Sbjct: 411 PYSECSWEDGALISKKFQACIDEYFSRNQSKT--TPFKDCK--VLKQRPRFVALKKQPSY 466
Query: 75 ---REGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
EG E + G L+ L +S G N CI++ G GKT T+ FL H
Sbjct: 467 IGGHEGLELRDYQLNG---LNWLAHSWCKG--NSCILADEMGLGKTIQTISFLNYLFHEH 521
Query: 132 PRCRP-VIIAPRSMLLTWEEEFKKW 155
P +++ P S L +W+ E + W
Sbjct: 522 QLYGPFLLVVPLSTLTSWQREIQTW 546
>UNIPROTKB|I3L6N4 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000022643
Uniprot:I3L6N4
Length = 1798
Score = 192 (72.6 bits), Expect = 5.8e-22, Sum P(3) = 5.8e-22
Identities = 63/200 (31%), Positives = 99/200 (49%)
Query: 427 LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSIN 485
LLI L N +VL+FSQ + L ++ E L++R F ++ +DG + R+ +++
Sbjct: 790 LLIRLRERGN-RVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALD 842
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
N S+ L ST+A GINL A VV+ D WNP + QA +RA+R G V+
Sbjct: 843 HFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVN 902
Query: 546 VYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT-TASEPLEDKIL--EEMAQL 602
+Y L+T ++E D L R +K+ ++V D G T S P EE++ +
Sbjct: 903 IYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAI 962
Query: 603 YNNPSETLINAIIPQPKETE 622
+E L P+ +E E
Sbjct: 963 LKFGAEELFKE--PEGEEQE 980
Score = 111 (44.1 bits), Expect = 5.8e-22, Sum P(3) = 5.8e-22
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FG--EVLRT 295
DE H +NDD+ ++K L K+ R++++GTP QN+ +EL + L + E F E
Sbjct: 608 DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE 667
Query: 296 VRKSGREISKAK-HASL 311
GRE A H L
Sbjct: 668 EHGKGREYGYASLHKEL 684
Score = 95 (38.5 bits), Expect = 5.8e-22, Sum P(3) = 5.8e-22
Identities = 40/145 (27%), Positives = 59/145 (40%)
Query: 15 PSRRAEWREYNNVDPSFLDDLNSRDSGFDSQTGCDPFTHAQGTVWELVPRDVRKKMFPHQ 74
P W + + F ++ S S+T PF + V + PR V K P
Sbjct: 411 PYSECSWEDGALISKKFQACIDEYFSRNQSKT--TPFKDCK--VLKQRPRFVALKKQPSY 466
Query: 75 ---REGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
EG E + G L+ L +S G N CI++ G GKT T+ FL H
Sbjct: 467 IGGHEGLELRDYQLNG---LNWLAHSWCKG--NSCILADEMGLGKTIQTISFLNYLFHEH 521
Query: 132 PRCRP-VIIAPRSMLLTWEEEFKKW 155
P +++ P S L +W+ E + W
Sbjct: 522 QLYGPFLLVVPLSTLTSWQREIQTW 546
>UNIPROTKB|I3LIS2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:CU570924
EMBL:CU928692 Ensembl:ENSSSCT00000032432 Uniprot:I3LIS2
Length = 1799
Score = 192 (72.6 bits), Expect = 5.8e-22, Sum P(3) = 5.8e-22
Identities = 63/200 (31%), Positives = 99/200 (49%)
Query: 427 LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSIN 485
LLI L N +VL+FSQ + L ++ E L++R F ++ +DG + R+ +++
Sbjct: 791 LLIRLRERGN-RVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALD 843
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
N S+ L ST+A GINL A VV+ D WNP + QA +RA+R G V+
Sbjct: 844 HFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVN 903
Query: 546 VYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT-TASEPLEDKIL--EEMAQL 602
+Y L+T ++E D L R +K+ ++V D G T S P EE++ +
Sbjct: 904 IYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEELSAI 963
Query: 603 YNNPSETLINAIIPQPKETE 622
+E L P+ +E E
Sbjct: 964 LKFGAEELFKE--PEGEEQE 981
Score = 111 (44.1 bits), Expect = 5.8e-22, Sum P(3) = 5.8e-22
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FG--EVLRT 295
DE H +NDD+ ++K L K+ R++++GTP QN+ +EL + L + E F E
Sbjct: 609 DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE 668
Query: 296 VRKSGREISKAK-HASL 311
GRE A H L
Sbjct: 669 EHGKGREYGYASLHKEL 685
Score = 95 (38.5 bits), Expect = 5.8e-22, Sum P(3) = 5.8e-22
Identities = 40/145 (27%), Positives = 59/145 (40%)
Query: 15 PSRRAEWREYNNVDPSFLDDLNSRDSGFDSQTGCDPFTHAQGTVWELVPRDVRKKMFPHQ 74
P W + + F ++ S S+T PF + V + PR V K P
Sbjct: 412 PYSECSWEDGALISKKFQACIDEYFSRNQSKT--TPFKDCK--VLKQRPRFVALKKQPSY 467
Query: 75 ---REGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
EG E + G L+ L +S G N CI++ G GKT T+ FL H
Sbjct: 468 IGGHEGLELRDYQLNG---LNWLAHSWCKG--NSCILADEMGLGKTIQTISFLNYLFHEH 522
Query: 132 PRCRP-VIIAPRSMLLTWEEEFKKW 155
P +++ P S L +W+ E + W
Sbjct: 523 QLYGPFLLVVPLSTLTSWQREIQTW 547
>POMBASE|SPAC20G8.08c [details] [associations]
symbol:fft1 "fun thirty related protein Fft1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC20G8.08c
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 PIR:T38130 RefSeq:NP_593325.1
ProteinModelPortal:P87114 EnsemblFungi:SPAC20G8.08c.1
GeneID:2541983 KEGG:spo:SPAC20G8.08c OrthoDB:EOG4BCHW4
NextBio:20803065 Uniprot:P87114
Length = 944
Score = 214 (80.4 bits), Expect = 8.0e-22, Sum P(3) = 8.0e-22
Identities = 65/178 (36%), Positives = 99/178 (55%)
Query: 423 KTRFLLILLELST-NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQ 481
K + L LL+ S NE++L+FSQ+ T +++ L + N + E L +DG V+ RQ
Sbjct: 766 KVKKLCSLLKKSRPNERILIFSQF----TQVLDILEYVLNTLD-LEFLRLDGSTPVETRQ 820
Query: 482 SSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQK 541
I+ + + ++ L STK+ GINL A+ V+L D +NPF + QA RA+R+GQ
Sbjct: 821 QLIDDFHT-NENYKVFLLSTKSGGFGINLTCANIVILFDCSFNPFDDMQAEDRAHRVGQT 879
Query: 542 RVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEM 599
R VHVY LIT T+E + +RR A + + SS TT SE ++ +I E+
Sbjct: 880 RPVHVYRLITKNTIE-ENIRRLAN----TKLTLESS------LTTDSEKIQKEISGEL 926
Score = 107 (42.7 bits), Expect = 8.0e-22, Sum P(3) = 8.0e-22
Identities = 47/169 (27%), Positives = 74/169 (43%)
Query: 218 KLVSG--DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
+L SG D+ S + + +FDEGH +N + +K L I R++++GTP QNN
Sbjct: 520 QLASGSRDDRSFLRKQRFDISIFDEGHYLKNRMSERYKHLMNIPANFRLLITGTPLQNNL 579
Query: 276 QELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIA 335
+EL +SL+ +V + I K K S I R + +
Sbjct: 580 KEL---ISLLAFMLPKVFDNNMQGLDIIYKIKTTS-DGDIERA--YLSQERISRAKTIMN 633
Query: 336 PFV-NVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN 383
PF+ K VL + P ++H V +E Q L +V +K+ V N
Sbjct: 634 PFILRRRKENVLSDLPPKIQH-VEYCHMEETQLSLYLSVLELKNLVNAN 681
Score = 64 (27.6 bits), Expect = 8.0e-22, Sum P(3) = 8.0e-22
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155
I++ G GKT + FL + + + R +++ P S L W EF+K+
Sbjct: 436 ILADEMGLGKTCQVISFLASLKEKGIQNRHLVVVPSSTLGNWLREFEKF 484
>SGD|S000001934 [details] [associations]
symbol:IRC5 "Putative ATPase containing the DEAD/H
helicase-related sequence motif" species:4932 "Saccharomyces
cerevisiae" [GO:0006312 "mitotic recombination" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000001934 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:D50617 EMBL:BK006940 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006312 GeneTree:ENSGT00550000075106 PIR:S56293
RefSeq:NP_116696.2 ProteinModelPortal:P43610 SMR:P43610
DIP:DIP-5300N MINT:MINT-543614 STRING:P43610 PaxDb:P43610
PRIDE:P43610 EnsemblFungi:YFR038W GeneID:850599 KEGG:sce:YFR038W
CYGD:YFR038w OMA:FEIFNKW OrthoDB:EOG40S3Q6 NextBio:966463
Genevestigator:P43610 GermOnline:YFR038W Uniprot:P43610
Length = 853
Score = 193 (73.0 bits), Expect = 9.7e-22, Sum P(3) = 9.7e-22
Identities = 50/136 (36%), Positives = 70/136 (51%)
Query: 433 LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQE--VLYMDGKQDVKKRQSSINVLNDP 490
+S KVL++SQ++ L LI + W + +DG + + R+ + N
Sbjct: 616 ISEGHKVLIYSQFVNMLDLIED-------WCDLNSFATFRIDGSVNNETRKDQLEKFNSS 668
Query: 491 SSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLI 550
+ I L ST+A GINLVGA VVL D WNP V+ QA+ R +R+GQ+ V VY L
Sbjct: 669 KDKHNIFLLSTRAAGLGINLVGADTVVLFDSDWNPQVDLQAMDRCHRIGQESPVIVYRLC 728
Query: 551 TSETLEWDKLRRQARK 566
T+E L R A K
Sbjct: 729 CDNTIEHVILTRAANK 744
Score = 114 (45.2 bits), Expect = 9.7e-22, Sum P(3) = 9.7e-22
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 205 GTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRI 264
GTGI+ SY + ++ +L I+ + DEGH +N + + K L +I T R+
Sbjct: 323 GTGIVITSYEI---ILRDTDL--IMSQNWKFLIVDEGHRLKNINCRLIKELKKINTSNRL 377
Query: 265 ILSGTPFQNNFQELENTLSLV 285
+L+GTP QNN EL + L+ +
Sbjct: 378 LLTGTPLQNNLAELWSLLNFI 398
Score = 77 (32.2 bits), Expect = 9.7e-22, Sum P(3) = 9.7e-22
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIP- 160
G NG I++ G GKT ++ L ++ + ++ AP S L W EF K+ D+P
Sbjct: 240 GLNG-ILADEMGLGKTVQSIALLAFIYEMDTKGPFLVTAPLSTLDNWMNEFAKFAPDLPV 298
Query: 161 --FYNLNK-PELSGKENN 175
+Y N E S K N
Sbjct: 299 LKYYGTNGYKERSAKLKN 316
>SGD|S000000277 [details] [associations]
symbol:RDH54 "DNA-dependent ATPase" species:4932
"Saccharomyces cerevisiae" [GO:0007131 "reciprocal meiotic
recombination" evidence=IGI;IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000727 "double-strand break repair via
break-induced replication" evidence=TAS] [GO:0005634 "nucleus"
evidence=IEA;IC] [GO:0030491 "heteroduplex formation" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0045144 "meiotic sister chromatid segregation" evidence=IMP]
[GO:0015616 "DNA translocase activity" evidence=IDA] [GO:0032392
"DNA geometric change" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SGD:S000000277 GO:GO:0005524
GO:GO:0005634 EMBL:BK006936 GO:GO:0004386 EMBL:X76294
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0007131 GO:GO:0045144 InterPro:IPR018838 Pfam:PF10382
GO:GO:0000727 KO:K10877 GO:GO:0015616 GO:GO:0032392
HOGENOM:HOG000204521 GO:GO:0030491 OrthoDB:EOG4CVKG1 EMBL:Z35942
PIR:S45466 RefSeq:NP_009629.6 RefSeq:NP_009633.3
ProteinModelPortal:P38086 SMR:P38086 DIP:DIP-792N IntAct:P38086
MINT:MINT-566887 STRING:P38086 PaxDb:P38086 PeptideAtlas:P38086
EnsemblFungi:YBR073W GeneID:852365 GeneID:852369 KEGG:sce:YBR073W
KEGG:sce:YBR077C CYGD:YBR073w GeneTree:ENSGT00700000105778
OMA:AMSRIHR NextBio:971140 Genevestigator:P38086 GermOnline:YBR073W
GO:GO:0003916 Uniprot:P38086
Length = 958
Score = 287 (106.1 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 139/577 (24%), Positives = 245/577 (42%)
Query: 68 KKMFPHQREGFEFIWKNIAG-------GIDLDELKNST---STGGGNGCIISHAPGTGKT 117
K + PHQREG +F++ + G D+D S + +GC+++ G GKT
Sbjct: 294 KFLRPHQREGVKFMYDCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKT 353
Query: 118 GLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLN--KPELSGKENN 175
+++ + ++ P V + + LT KK + P + K E GK N
Sbjct: 354 LMSITLIWTLIRQTPFASKVSCSQSGIPLTGL--CKKILVVCPVTLIGNWKREF-GKWLN 410
Query: 176 ----GAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLD 231
G + L K+ + ++K+ +L + Y EKL+S E
Sbjct: 411 LSRIGVLTLSSRNSPDMDKMAVRNFLKVQRTYQ---VLIIGY---EKLLSVSEELEKNKH 464
Query: 232 LPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-G 290
L + V DEGH +N + + L + RR+++L+GTP QN+ E + + G
Sbjct: 465 LIDMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDFINPGILG 524
Query: 291 EVLRTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPFVNVHKGTVLQESL 350
R+ I++A+ + + + + F+ +L++ L
Sbjct: 525 SFASFKRRFIIPITRARDTA--NRYNEELLEKGEERSKEMIEITKRFILRRTNAILEKYL 582
Query: 351 PGLRHSVVILQPDEFQKRLCKAV-EGVK-SFVELNYCXXXXXXXXXXX---------XQQ 399
P ++ +P Q K + +G + F +L +
Sbjct: 583 PPKTDIILFCKPYSQQILAFKDILQGARLDFGQLTFSSSLGLITLLKKVCNSPGLVGSDP 642
Query: 400 FFESFDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPLTLIMEQL 456
+++S D+ +G K + L+ LLE T EKV+V S Y + L +I E L
Sbjct: 643 YYKSHIKDTQSQDSYSRSLNSG-KLKVLMTLLEGIRKGTKEKVVVVSNYTQTLDII-ENL 700
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGINLVGASR 515
+ G +DG K+R S + N +P+ L S K+ G+NLVGASR
Sbjct: 701 MNM----AGMSHCRLDGSIPAKQRDSIVTSFNRNPAIFG--FLLSAKSGGVGLNLVGASR 754
Query: 516 VVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFP 575
++L D WNP V+ QA+SR +R GQK+ +Y L+T+ ++ L+RQ K S
Sbjct: 755 LILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFLG 814
Query: 576 SSDGGGNDQTTASEPLEDKILEEMAQLYNNPSETLIN 612
S+ ++ ++++ L +K E++ L++ ++T N
Sbjct: 815 DSEM--RNKESSNDDLFNK--EDLKDLFSVHTDTKSN 847
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 206 (77.6 bits), Expect = 1.2e-21, Sum P(3) = 1.2e-21
Identities = 65/217 (29%), Positives = 103/217 (47%)
Query: 367 KRLCKAVEG-VKSFVELNYCXXXXXXXXXXXXQQFFESFDVDSAKLARLKLDPEAGIKTR 425
+ L K V+G + FV L +Q+ +D +L +L I
Sbjct: 659 RELSKGVKGSINGFVNL-VMELKKCCNHASLTRQYDHIYDDAQGRLQQLLKSSGKLILLD 717
Query: 426 FLLILLELSTNEKVLVFSQYIEPLTLIMEQLR-HRFNWREGQEVLYMDGKQDVKKRQSSI 484
LL L+ +VL+FSQ + L ++ E L+ RF Q +DG R+ ++
Sbjct: 718 KLLCRLK-DKGHRVLIFSQMVMMLDILQEYLQLRRF---PSQR---LDGSMRADLRKQAL 770
Query: 485 NVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVV 544
+ N P S L ST+A GINL A V++ D WNP + QA+SRA+R+GQ + V
Sbjct: 771 DHYNAPGSTDFAFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQTKTV 830
Query: 545 HVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGG 581
++Y L+T ++E + + R RK+ ++V D G
Sbjct: 831 NIYRLVTKGSVEEEIVERAKRKLVLDHLVIQRMDTTG 867
Score = 108 (43.1 bits), Expect = 1.2e-21, Sum P(3) = 1.2e-21
Identities = 29/96 (30%), Positives = 54/96 (56%)
Query: 197 VKLYSWKMG-TGILGLSYRL--FEKLVSGDE-LSGILLDLPGLFVFDEGHTPRNDDTCMF 252
++ Y W +G T + ++ L +E L+ LS I D L V DE H +ND++ ++
Sbjct: 495 IRQYEWFVGGTKKMKINAILTTYEILLKDKAFLSSI--DWAALLV-DEAHRLKNDESLLY 551
Query: 253 KALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE 288
K+L++ + +++++GTP QN+ +EL L + E
Sbjct: 552 KSLTQFRFNHKLLITGTPLQNSLKELWALLHFIMPE 587
Score = 77 (32.2 bits), Expect = 1.2e-21, Sum P(3) = 1.2e-21
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKW 155
GN I++ G GKT ++ L + + P +++ P S + W++EF +W
Sbjct: 423 GNSSILADEMGLGKTIQSISLLASLFHRYDLAGPYLVVVPLSTMAAWQKEFAQW 476
Score = 38 (18.4 bits), Expect = 3.0e-11, Sum P(2) = 3.0e-11
Identities = 12/54 (22%), Positives = 28/54 (51%)
Query: 259 KTRRRIILSGTPFQN--NFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHAS 310
KT ++ + T + + N E EN+L+L+ + + ++ K +E+ K ++
Sbjct: 234 KTEQQFFVKWTGWSHLHNTWESENSLALMNAKGLKKVQNYVKKQKEVEMWKRSA 287
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 214 (80.4 bits), Expect = 1.3e-21, Sum P(4) = 1.3e-21
Identities = 49/119 (41%), Positives = 73/119 (61%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ +T +++ L WR G E +DG+ ++R+ +I+ N P+S I
Sbjct: 508 RVLIFSQ----MTRLLDILEDYCMWR-GYEYSRLDGQTPHEEREEAIDAFNAPNSSKFIF 562
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
+ ST+A GINL A V+L D WNP V+ QA+ RA+R+GQK+ V V+ LIT T+E
Sbjct: 563 MLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVE 621
Score = 89 (36.4 bits), Expect = 1.3e-21, Sum P(4) = 1.3e-21
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
V DE H +N+ + + + + K+ R++L+GTP QNN EL
Sbjct: 313 VIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHEL 354
Score = 86 (35.3 bits), Expect = 1.3e-21, Sum P(4) = 1.3e-21
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP---VIIAPRSMLLTWEEEFKKW 155
G NG I++ G GKT T+ L Y+K H R P +++ P+S L W EFK+W
Sbjct: 205 GVNG-ILADEMGLGKTLQTIALL-GYLK-HYRNIPGPHMVLVPKSTLHNWMNEFKRW 258
Score = 55 (24.4 bits), Expect = 8.4e-05, Sum P(4) = 8.4e-05
Identities = 24/82 (29%), Positives = 34/82 (41%)
Query: 524 NPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS---NMVFPSSDGG 580
NP + AI A R QK++ L ET E DKL Q W N +++
Sbjct: 810 NPEIPNPAI--AQREEQKKIDGAEPLTPQETEEKDKLLTQGFTNWTKRDFNQFIKANEKY 867
Query: 581 GNDQT-TASEPLEDKILEEMAQ 601
G D + +E K EE+ +
Sbjct: 868 GRDDIDNIAREVEGKSPEEVME 889
Score = 37 (18.1 bits), Expect = 1.3e-21, Sum P(4) = 1.3e-21
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 296 VRKSGREISKAKHASLISSIGRCANH 321
V S ++ K + +++ + +C NH
Sbjct: 441 VLNSSGKMDKMRLLNILMQLRKCCNH 466
>ZFIN|ZDB-GENE-041111-187 [details] [associations]
symbol:chd4a "chromodomain helicase DNA binding
protein 4a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-041111-187
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX004850
IPI:IPI00962864 Ensembl:ENSDART00000005453 ArrayExpress:F1QWV5
Bgee:F1QWV5 Uniprot:F1QWV5
Length = 1930
Score = 185 (70.2 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 51/171 (29%), Positives = 87/171 (50%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P + +
Sbjct: 1052 RVLIFSQMTKMLDLLEDFLEN-----EGYKYERIDGGITGGMRQEAIDRFNAPGAPQFVF 1106
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L ST+A GINL A VV+ D WNP + QA SRA+R+GQ + V +Y +T ++E
Sbjct: 1107 LLSTRAGGLGINLATADTVVIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTKASVE- 1165
Query: 558 DKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSE 608
+++ + A+K + G + + + L+D + +L+ + E
Sbjct: 1166 ERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGTEELFKDEGE 1216
Score = 162 (62.1 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 57/189 (30%), Positives = 90/189 (47%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID--I 159
G I++ G GKT T VFL + Y + H + ++ AP S ++ WE EF+ W D +
Sbjct: 728 GTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYV 787
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K + N + +N RG K ++ K S K +L SY L
Sbjct: 788 VTYVGDKDSRAVIREN-EFSFENNAIRGGKKPSKMK--KEASVKFH--VLLTSYELIT-- 840
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ L I D L V DE H +N+ + F+ L+ + +++L+GTP QNN +EL
Sbjct: 841 IDTAVLGSI--DWACLVV-DEAHRLKNNQSKFFRILNNYPLQHKLLLTGTPLQNNLEELF 897
Query: 280 NTLSLVRQE 288
+ L+ + E
Sbjct: 898 HLLNFLTPE 906
>RGD|1311923 [details] [associations]
symbol:Chd3 "chromodomain helicase DNA binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISO]
[GO:0007051 "spindle organization" evidence=ISO] [GO:0016581 "NuRD
complex" evidence=ISO] [GO:0045111 "intermediate filament
cytoskeleton" evidence=ISO] [GO:0051297 "centrosome organization"
evidence=ISO] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326
IPI:IPI00369880 EMBL:AY903245 EMBL:AY903246 UniGene:Rn.232095
STRING:Q2KML1 UCSC:RGD:1311923 Genevestigator:Q2KML1 Uniprot:Q2KML1
Length = 1925
Score = 186 (70.5 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 63/210 (30%), Positives = 106/210 (50%)
Query: 406 VDSAKLARLKLDPEAGIKTRFLLILLELSTNE------KVLVFSQYIEPLTLIMEQLRHR 459
++S KL + A IK+ L+LL+ + +VL+FSQ + L L+ + L +
Sbjct: 996 MESPKLPSGAYEGGALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY- 1054
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++
Sbjct: 1055 ----EGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIF 1110
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQA-RKVWWSNMVFPSSD 578
D WNP + QA SRA+R+GQ V +Y +T ++E +++ + A RK+ +++V
Sbjct: 1111 DSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE-ERITQVAKRKMMLTHLVVRPGL 1169
Query: 579 GGGNDQTTASEPLEDKILEEMAQLYNNPSE 608
G + E L+D + +L+ + +E
Sbjct: 1170 GSKAGSMSKQE-LDDILKFGTEELFKDENE 1198
Score = 160 (61.4 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 58/206 (28%), Positives = 95/206 (46%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWG--IDI 159
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W +
Sbjct: 710 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYV 769
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K + N + DN +G GK +K + ++ +L SY L
Sbjct: 770 VTYTGDKDSRAIIREN-EFSFEDNAIKG-GKKAF--KMKREA-QVKFHVLLTSYELIT-- 822
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ L I V DE H +N+ + F+ L+ K +++L+GTP QNN +EL
Sbjct: 823 IDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 879
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISK 305
+ L+ + E L + +ISK
Sbjct: 880 HLLNFLTPERFNNLEGFLEEFADISK 905
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 198 (74.8 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 57/195 (29%), Positives = 100/195 (51%)
Query: 438 KVLVFSQYIEPLTLIMEQLR-HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI 496
+VL+FSQ + L ++ + L R+ ++ +DG + R+ +++ N S+
Sbjct: 814 RVLIFSQMVRMLDILADYLSMKRYQFQR------LDGSIKGELRKQALDHFNAEGSEDFC 867
Query: 497 MLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T T+E
Sbjct: 868 FLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVE 927
Query: 557 WDKLRRQARKVWWSNMVFPSSDGGGN---DQTTASEPLEDKILEEMAQLYNNPSETLINA 613
D + R +K+ ++V D G D ++A+ EE++ + +E L
Sbjct: 928 EDIIERAKKKMVLDHLVIQRMDTTGRTVLDNSSANSNSNPFNKEELSAILKFGAEDLFKE 987
Query: 614 II---PQPKETELIE 625
+P+E ++ E
Sbjct: 988 AEGEESEPQEMDIDE 1002
Score = 106 (42.4 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 20/63 (31%), Positives = 39/63 (61%)
Query: 227 GILLDLPGLFV-FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
G+L ++ F+ DE H +NDD+ ++K L ++ R++++GTP QN+ +EL + L +
Sbjct: 609 GVLGNINWAFLGVDEAHRLKNDDSLLYKTLIDFRSNHRLLITGTPLQNSLKELWSLLHFL 668
Query: 286 RQE 288
+
Sbjct: 669 MSD 671
Score = 89 (36.4 bits), Expect = 1.8e-21, Sum P(3) = 1.8e-21
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDI 159
N I++ G GKT T+ FL H P +++ P S L +W+ EF W D+
Sbjct: 508 NSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFIVVVPLSTLTSWQREFDTWAPDM 564
Score = 37 (18.1 bits), Expect = 2.1e-14, Sum P(3) = 2.1e-14
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 343 GTVLQESLPGLRHSVVILQPDEFQ 366
GT LQ SL L + L D+F+
Sbjct: 651 GTPLQNSLKELWSLLHFLMSDKFE 674
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 213 (80.0 bits), Expect = 1.8e-21, Sum P(4) = 1.8e-21
Identities = 49/119 (41%), Positives = 72/119 (60%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ +T +++ L WR G E +DG+ ++R+ +I N P+S I
Sbjct: 507 RVLIFSQ----MTRLLDILEDYCMWR-GYEYCRLDGQTPHEEREEAIEAFNVPNSSRFIF 561
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
+ ST+A GINL A V+L D WNP V+ QA+ RA+R+GQK+ V V+ LIT T+E
Sbjct: 562 MLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVE 620
Score = 89 (36.4 bits), Expect = 1.8e-21, Sum P(4) = 1.8e-21
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
V DE H +N+ + + + + K+ R++L+GTP QNN EL
Sbjct: 312 VIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHEL 353
Score = 86 (35.3 bits), Expect = 1.8e-21, Sum P(4) = 1.8e-21
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP---VIIAPRSMLLTWEEEFKKW 155
G NG I++ G GKT T+ L Y+K H R P +++ P+S L W EFK+W
Sbjct: 204 GVNG-ILADEMGLGKTLQTIALL-GYLK-HYRNIPGPHMVLVPKSTLHNWMNEFKRW 257
Score = 50 (22.7 bits), Expect = 0.00027, Sum P(4) = 0.00027
Identities = 22/82 (26%), Positives = 34/82 (41%)
Query: 524 NPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS---NMVFPSSDGG 580
NP + A+ A R QK++ L ET E +KL Q W N +++
Sbjct: 809 NPDIPNPAV--AQREEQKKIDGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKY 866
Query: 581 GNDQT-TASEPLEDKILEEMAQ 601
G D + +E K EE+ +
Sbjct: 867 GRDDIDNIAREVEGKSPEEVME 888
Score = 37 (18.1 bits), Expect = 1.8e-21, Sum P(4) = 1.8e-21
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 296 VRKSGREISKAKHASLISSIGRCANH 321
V S ++ K + +++ + +C NH
Sbjct: 440 VLNSAGKMDKMRLLNILMQLRKCCNH 465
>UNIPROTKB|F1LPP7 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 IPI:IPI00369880
Ensembl:ENSRNOT00000057060 Uniprot:F1LPP7
Length = 2020
Score = 186 (70.5 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 63/210 (30%), Positives = 106/210 (50%)
Query: 406 VDSAKLARLKLDPEAGIKTRFLLILLELSTNE------KVLVFSQYIEPLTLIMEQLRHR 459
++S KL + A IK+ L+LL+ + +VL+FSQ + L L+ + L +
Sbjct: 1091 MESPKLPSGAYEGGALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY- 1149
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++
Sbjct: 1150 ----EGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIF 1205
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQA-RKVWWSNMVFPSSD 578
D WNP + QA SRA+R+GQ V +Y +T ++E +++ + A RK+ +++V
Sbjct: 1206 DSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE-ERITQVAKRKMMLTHLVVRPGL 1264
Query: 579 GGGNDQTTASEPLEDKILEEMAQLYNNPSE 608
G + E L+D + +L+ + +E
Sbjct: 1265 GSKAGSMSKQE-LDDILKFGTEELFKDENE 1293
Score = 160 (61.4 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
Identities = 58/206 (28%), Positives = 95/206 (46%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWG--IDI 159
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W +
Sbjct: 805 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYV 864
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K + N + DN +G GK +K + ++ +L SY L
Sbjct: 865 VTYTGDKDSRAIIREN-EFSFEDNAIKG-GKKAF--KMKREA-QVKFHVLLTSYELIT-- 917
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ L I V DE H +N+ + F+ L+ K +++L+GTP QNN +EL
Sbjct: 918 IDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 974
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISK 305
+ L+ + E L + +ISK
Sbjct: 975 HLLNFLTPERFNNLEGFLEEFADISK 1000
>UNIPROTKB|F1M7Q0 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR
IPI:IPI00959834 Ensembl:ENSRNOT00000012983 Uniprot:F1M7Q0
Length = 2054
Score = 186 (70.5 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 63/210 (30%), Positives = 106/210 (50%)
Query: 406 VDSAKLARLKLDPEAGIKTRFLLILLELSTNE------KVLVFSQYIEPLTLIMEQLRHR 459
++S KL + A IK+ L+LL+ + +VL+FSQ + L L+ + L +
Sbjct: 1091 MESPKLPSGAYEGGALIKSSGKLLLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY- 1149
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++
Sbjct: 1150 ----EGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIF 1205
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQA-RKVWWSNMVFPSSD 578
D WNP + QA SRA+R+GQ V +Y +T ++E +++ + A RK+ +++V
Sbjct: 1206 DSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE-ERITQVAKRKMMLTHLVVRPGL 1264
Query: 579 GGGNDQTTASEPLEDKILEEMAQLYNNPSE 608
G + E L+D + +L+ + +E
Sbjct: 1265 GSKAGSMSKQE-LDDILKFGTEELFKDENE 1293
Score = 160 (61.4 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
Identities = 58/206 (28%), Positives = 95/206 (46%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWG--IDI 159
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W +
Sbjct: 805 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYV 864
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K + N + DN +G GK +K + ++ +L SY L
Sbjct: 865 VTYTGDKDSRAIIREN-EFSFEDNAIKG-GKKAF--KMKREA-QVKFHVLLTSYELIT-- 917
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ L I V DE H +N+ + F+ L+ K +++L+GTP QNN +EL
Sbjct: 918 IDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 974
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISK 305
+ L+ + E L + +ISK
Sbjct: 975 HLLNFLTPERFNNLEGFLEEFADISK 1000
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 185 (70.2 bits), Expect = 2.0e-21, Sum P(3) = 2.0e-21
Identities = 48/146 (32%), Positives = 81/146 (55%)
Query: 438 KVLVFSQYIEPLTLIMEQL--RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
+VL+FSQ + L ++ E L +H + ++ +DG + R+ +++ N S+
Sbjct: 811 RVLIFSQMVRMLDILAEYLTIKH-YPFQR------LDGSIKGEIRKQALDHFNADGSEDF 863
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T T+
Sbjct: 864 CFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTV 923
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGG 581
E + + R +K+ ++V D G
Sbjct: 924 EEEIIERAKKKMVLDHLVIQRMDTTG 949
Score = 113 (44.8 bits), Expect = 2.0e-21, Sum P(3) = 2.0e-21
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV---RQEFGEVLRT 295
DE H +NDD+ ++K L K+ R++++GTP QN+ +EL + L + + EF E
Sbjct: 619 DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEE 678
Query: 296 VRKSGRE 302
GRE
Sbjct: 679 DHGKGRE 685
Score = 87 (35.7 bits), Expect = 2.0e-21, Sum P(3) = 2.0e-21
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDI 159
N I++ G GKT T+ FL H P +I+ P S L +W+ EF+ W +I
Sbjct: 505 NSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEI 561
>UNIPROTKB|Q12873 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0008270
"zinc ion binding" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007051 "spindle organization" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0051297 "centrosome organization" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0016581 "NuRD complex" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR001841
InterPro:IPR009071 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
EMBL:CH471108 GO:GO:0005730 GO:GO:0051297 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 Gene3D:1.10.30.10 GO:GO:0045111 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003
InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007051 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 EMBL:U91543 EMBL:AF006515 EMBL:U08379 IPI:IPI00373870
IPI:IPI00411592 RefSeq:NP_001005271.2 RefSeq:NP_001005273.1
RefSeq:NP_005843.2 UniGene:Hs.25601 ProteinModelPortal:Q12873
SMR:Q12873 DIP:DIP-32496N IntAct:Q12873 MINT:MINT-1185641
STRING:Q12873 PhosphoSite:Q12873 DMDM:88911273 PaxDb:Q12873
PRIDE:Q12873 Ensembl:ENST00000330494 Ensembl:ENST00000358181
GeneID:1107 KEGG:hsa:1107 UCSC:uc002gje.2 UCSC:uc002gjf.2
GeneCards:GC17P007788 H-InvDB:HIX0013516 HGNC:HGNC:1918
HPA:HPA043368 MIM:602120 neXtProt:NX_Q12873 PharmGKB:PA26454
HOVERGEN:HBG005326 KO:K11642 PhylomeDB:Q12873 ChiTaRS:CHD3
GenomeRNAi:1107 NextBio:4590 ArrayExpress:Q12873 Bgee:Q12873
CleanEx:HS_CHD3 Genevestigator:Q12873 GermOnline:ENSG00000170004
Uniprot:Q12873
Length = 2000
Score = 185 (70.2 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
Identities = 63/210 (30%), Positives = 106/210 (50%)
Query: 406 VDSAKLARLKLDPEAGIKTRFLLILLELSTNE------KVLVFSQYIEPLTLIMEQLRHR 459
++S KL + A IK+ L+LL+ + +VL+FSQ + L L+ + L +
Sbjct: 1040 MESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY- 1098
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++
Sbjct: 1099 ----EGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIF 1154
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQA-RKVWWSNMVFPSSD 578
D WNP + QA SRA+R+GQ V +Y +T ++E +++ + A RK+ +++V
Sbjct: 1155 DSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE-ERITQVAKRKMMLTHLVVRPGL 1213
Query: 579 GGGNDQTTASEPLEDKILEEMAQLYNNPSE 608
G + E L+D + +L+ + +E
Sbjct: 1214 GSKAGSMSKQE-LDDILKFGTEELFKDENE 1242
Score = 160 (61.4 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
Identities = 58/206 (28%), Positives = 95/206 (46%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWG--IDI 159
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W +
Sbjct: 754 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYV 813
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K + N + DN +G GK +K + ++ +L SY L
Sbjct: 814 VTYTGDKDSRAIIREN-EFSFEDNAIKG-GKKAF--KMKREA-QVKFHVLLTSYELIT-- 866
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ L I V DE H +N+ + F+ L+ K +++L+GTP QNN +EL
Sbjct: 867 IDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 923
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISK 305
+ L+ + E L + +ISK
Sbjct: 924 HLLNFLTPERFNNLEGFLEEFADISK 949
>UNIPROTKB|E9PG89 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006333 "chromatin assembly or
disassembly" evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IDA] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 GO:GO:0045111
GO:GO:0006333 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 RefSeq:NP_001005271.2 UniGene:Hs.25601 GeneID:1107
KEGG:hsa:1107 HGNC:HGNC:1918 KO:K11642 ChiTaRS:CHD3 GenomeRNAi:1107
NextBio:4590 EMBL:AC104581 IPI:IPI00465222
ProteinModelPortal:E9PG89 SMR:E9PG89 PRIDE:E9PG89
Ensembl:ENST00000380358 UCSC:uc002gjd.2 OMA:EPEPGYR
ArrayExpress:E9PG89 Bgee:E9PG89 Uniprot:E9PG89
Length = 2059
Score = 185 (70.2 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 63/210 (30%), Positives = 106/210 (50%)
Query: 406 VDSAKLARLKLDPEAGIKTRFLLILLELSTNE------KVLVFSQYIEPLTLIMEQLRHR 459
++S KL + A IK+ L+LL+ + +VL+FSQ + L L+ + L +
Sbjct: 1099 MESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY- 1157
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++
Sbjct: 1158 ----EGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIF 1213
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQA-RKVWWSNMVFPSSD 578
D WNP + QA SRA+R+GQ V +Y +T ++E +++ + A RK+ +++V
Sbjct: 1214 DSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE-ERITQVAKRKMMLTHLVVRPGL 1272
Query: 579 GGGNDQTTASEPLEDKILEEMAQLYNNPSE 608
G + E L+D + +L+ + +E
Sbjct: 1273 GSKAGSMSKQE-LDDILKFGTEELFKDENE 1301
Score = 160 (61.4 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 58/206 (28%), Positives = 95/206 (46%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWG--IDI 159
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W +
Sbjct: 813 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYV 872
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K + N + DN +G GK +K + ++ +L SY L
Sbjct: 873 VTYTGDKDSRAIIREN-EFSFEDNAIKG-GKKAF--KMKREA-QVKFHVLLTSYELIT-- 925
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ L I V DE H +N+ + F+ L+ K +++L+GTP QNN +EL
Sbjct: 926 IDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 982
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISK 305
+ L+ + E L + +ISK
Sbjct: 983 HLLNFLTPERFNNLEGFLEEFADISK 1008
>TAIR|locus:2054011 [details] [associations]
symbol:CHR8 "chromatin remodeling 8" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0010332 "response to
gamma radiation" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0010332 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AC005724 HOGENOM:HOG000170952 KO:K10841 IPI:IPI00524515
PIR:C84568 RefSeq:NP_179466.1 UniGene:At.39947
ProteinModelPortal:Q9ZV43 SMR:Q9ZV43 STRING:Q9ZV43 PaxDb:Q9ZV43
PRIDE:Q9ZV43 EnsemblPlants:AT2G18760.1 GeneID:816391
KEGG:ath:AT2G18760 TAIR:At2g18760 InParanoid:Q9ZV43 OMA:TETSNIF
PhylomeDB:Q9ZV43 ProtClustDB:CLSN2683061 ArrayExpress:Q9ZV43
Genevestigator:Q9ZV43 Uniprot:Q9ZV43
Length = 1187
Score = 193 (73.0 bits), Expect = 2.7e-21, Sum P(2) = 2.7e-21
Identities = 54/160 (33%), Positives = 87/160 (54%)
Query: 417 DPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQL-RHRFNWREGQEVLYMDG 473
+PE K + + +L++ +VL+FSQ + L ++ L + +++R MDG
Sbjct: 722 NPERSGKMKVVAEVLKVWKQQGHRVLLFSQTQQMLDILESFLVANEYSYRR------MDG 775
Query: 474 KQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAIS 533
VK+R + I+ N+ S + + +TK G NL GA+RV++ D WNP + QA
Sbjct: 776 LTPVKQRMALIDEFNN-SEDMFVFVLTTKVGGLGTNLTGANRVIIFDPDWNPSNDMQARE 834
Query: 534 RAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
RA+R+GQK+ V VY LIT T+E RQ K + +N +
Sbjct: 835 RAWRIGQKKDVTVYRLITRGTIEEKVYHRQIYKHFLTNKI 874
Score = 146 (56.5 bits), Expect = 2.7e-21, Sum P(2) = 2.7e-21
Identities = 62/234 (26%), Positives = 97/234 (41%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P + +K+F +QR G +++W EL + GG II G GKT L
Sbjct: 377 IPECIFRKLFDYQRVGVQWLW----------EL-HCQRAGG----IIGDEMGLGKTIQVL 421
Query: 122 VFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + + +P +II P ++L W E +KW D L+ G
Sbjct: 422 SFLGS-LHFSKMYKPSIIICPVTLLRQWRREAQKWYPDFHVEILHDSAQDSGHGKGQGKA 480
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGIL--------GLSYRLFEKL-VSGDELSGILLD 231
++ V K + K +L GL +E+L + G++L I
Sbjct: 481 SESDYDSESSVDSDHEPKSKNTKKWDSLLNRVLNSESGLLITTYEQLRLQGEKLLNIEW- 539
Query: 232 LPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
G V DEGH RN ++ + +++T RII++G P QN EL + V
Sbjct: 540 --GYAVLDEGHRIRNPNSDITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFV 591
Score = 44 (20.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 540 QKRVVH--VY-HLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKIL 596
+++V H +Y H +T++ L+ + RR + ++ DG N T S + ++
Sbjct: 857 EEKVYHRQIYKHFLTNKILKNPQQRRFFKARDMKDLFILKDDGDSNASTETSN-IFSQLA 915
Query: 597 EEM 599
EE+
Sbjct: 916 EEI 918
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 232 (86.7 bits), Expect = 2.9e-21, Sum P(3) = 2.9e-21
Identities = 60/175 (34%), Positives = 96/175 (54%)
Query: 407 DSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQ 466
D++KL ++ L + LL+ L T +VL+FSQ + L ++ E L R G
Sbjct: 927 DNSKLDKIILSSGKLVILDKLLVRLR-ETKHRVLIFSQMVRMLDILAEYLSLR-----GF 980
Query: 467 EVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPF 526
+ +DG + RQ +++ N P+S L ST+A GINL A VV+ D WNP
Sbjct: 981 QFQRLDGSTKAELRQQAMDHFNAPASDDFCFLLSTRAGGLGINLATADTVVIFDSDWNPQ 1040
Query: 527 VERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGG 581
+ QA+SRA+R+GQ+ VV++Y +TS+++E + L R RK+ ++V + G
Sbjct: 1041 NDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEEILERAKRKMVLDHLVIQKLNAEG 1095
Score = 88 (36.0 bits), Expect = 2.9e-21, Sum P(3) = 2.9e-21
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
DE H +N + ++ AL T+ +++++GTP QN+ +EL
Sbjct: 760 DEAHRLKNSEAQLYTALLEFSTKNKLLITGTPLQNSVEEL 799
Score = 68 (29.0 bits), Expect = 2.9e-21, Sum P(3) = 2.9e-21
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKW--GIDIPFY 162
I++ G GKT ++ L P +++ P S L W +EF+KW G++I Y
Sbjct: 647 ILADEMGLGKTVQSVSMLGFLQNTQQIPGPFLVVVPLSTLANWAKEFRKWLPGMNIIVY 705
Score = 42 (19.8 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 130 LHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNK 166
L P+ ++ S L ++++ KW ++ F++LNK
Sbjct: 855 LPPKIERILRVEMSPL---QKQYYKWILERNFHDLNK 888
Score = 40 (19.1 bits), Expect = 2.5e-16, Sum P(3) = 2.5e-16
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 343 GTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN 383
GT LQ S+ L + L P +F+ + + VE K+ N
Sbjct: 789 GTPLQNSVEELWALLHFLDPGKFKNK-DEFVENYKNLSSFN 828
>UNIPROTKB|E2RTI2 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:AAEX03003635
EMBL:AAEX03003636 Ensembl:ENSCAFT00000026729 Uniprot:E2RTI2
Length = 1998
Score = 184 (69.8 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
Identities = 63/210 (30%), Positives = 105/210 (50%)
Query: 406 VDSAKLARLKLDPEAGIKTRFLLILLELSTNE------KVLVFSQYIEPLTLIMEQLRHR 459
++S KL + A IK L+LL+ + +VL+FSQ + L L+ + L +
Sbjct: 1038 MESPKLPSGAYEGGALIKASGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY- 1096
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++
Sbjct: 1097 ----EGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIF 1152
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQA-RKVWWSNMVFPSSD 578
D WNP + QA SRA+R+GQ V +Y +T ++E +++ + A RK+ +++V
Sbjct: 1153 DSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE-ERITQVAKRKMMLTHLVVRPGL 1211
Query: 579 GGGNDQTTASEPLEDKILEEMAQLYNNPSE 608
G + E L+D + +L+ + +E
Sbjct: 1212 GSKAGSMSKQE-LDDILKFGTEELFKDENE 1240
Score = 160 (61.4 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
Identities = 58/206 (28%), Positives = 95/206 (46%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWG--IDI 159
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W +
Sbjct: 752 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYV 811
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K + N + DN +G GK +K + ++ +L SY L
Sbjct: 812 VTYTGDKDSRAIIREN-EFSFEDNAIKG-GKKAF--KMKREA-QVKFHVLLTSYELIT-- 864
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ L I V DE H +N+ + F+ L+ K +++L+GTP QNN +EL
Sbjct: 865 IDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 921
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISK 305
+ L+ + E L + +ISK
Sbjct: 922 HLLNFLTPERFNNLEGFLEEFADISK 947
>UNIPROTKB|F1ST12 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 CTD:1107 KO:K11642 OMA:EPEPGYR
EMBL:CU972380 RefSeq:XP_003132000.1 UniGene:Ssc.1663
Ensembl:ENSSSCT00000019548 GeneID:100188906 KEGG:ssc:100188906
Uniprot:F1ST12
Length = 2002
Score = 184 (69.8 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
Identities = 63/210 (30%), Positives = 105/210 (50%)
Query: 406 VDSAKLARLKLDPEAGIKTRFLLILLELSTNE------KVLVFSQYIEPLTLIMEQLRHR 459
++S KL + A IK L+LL+ + +VL+FSQ + L L+ + L +
Sbjct: 1040 MESPKLPSGAYEGGALIKASGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY- 1098
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++
Sbjct: 1099 ----EGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIF 1154
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQA-RKVWWSNMVFPSSD 578
D WNP + QA SRA+R+GQ V +Y +T ++E +++ + A RK+ +++V
Sbjct: 1155 DSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE-ERITQVAKRKMMLTHLVVRPGL 1213
Query: 579 GGGNDQTTASEPLEDKILEEMAQLYNNPSE 608
G + E L+D + +L+ + +E
Sbjct: 1214 GSKAGSMSKQE-LDDILKFGTEELFKDENE 1242
Score = 160 (61.4 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
Identities = 58/206 (28%), Positives = 95/206 (46%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWG--IDI 159
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W +
Sbjct: 754 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYV 813
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K + N + DN +G GK +K + ++ +L SY L
Sbjct: 814 VTYTGDKDSRAIIREN-EFSFEDNAIKG-GKKAF--KMKREA-QVKFHVLLTSYELIT-- 866
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ L I V DE H +N+ + F+ L+ K +++L+GTP QNN +EL
Sbjct: 867 IDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 923
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISK 305
+ L+ + E L + +ISK
Sbjct: 924 HLLNFLTPERFNNLEGFLEEFADISK 949
>ZFIN|ZDB-GENE-030131-4532 [details] [associations]
symbol:chd4b "chromodomain helicase DNA binding
protein 4b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-030131-4532
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX511250
IPI:IPI00931161 RefSeq:XP_685699.4 UniGene:Dr.75373
Ensembl:ENSDART00000092902 Ensembl:ENSDART00000148389 GeneID:560622
KEGG:dre:560622 CTD:560622 NextBio:20883532 Uniprot:F1RBT2
Length = 1953
Score = 183 (69.5 bits), Expect = 3.5e-21, Sum P(3) = 3.5e-21
Identities = 50/168 (29%), Positives = 86/168 (51%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P + +
Sbjct: 1078 RVLIFSQMTKMLDLLEDFLEN-----EGYKYERIDGGVTGGMRQEAIDRFNAPGAPQFVF 1132
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L ST+A GINL A V++ D WNP + QA SRA+R+GQ + V +Y +T ++E
Sbjct: 1133 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTKASVE- 1191
Query: 558 DKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNN 605
+++ + A+K + G + + + L+D + QL+ +
Sbjct: 1192 ERITQVAKKKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGTEQLFKD 1239
Score = 167 (63.8 bits), Expect = 3.5e-21, Sum P(3) = 3.5e-21
Identities = 56/189 (29%), Positives = 92/189 (48%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID--I 159
G I++ G GKT T VFL + Y + H + ++ AP S ++ WE EF+ W D +
Sbjct: 754 GTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYV 813
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K + N DN RG K ++ K + K +L SY +L
Sbjct: 814 VTYVGDKDSRAVIREN-EFTFEDNAIRGGKKASKMK--KEAAVKFH--VLLTSY----EL 864
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
++ D+ +D L V DE H +N+ + F+ L+ + +++L+GTP QNN +EL
Sbjct: 865 ITIDQAILGSIDWACLVV-DEAHRLKNNQSKFFRVLNNYPLQHKLLLTGTPLQNNLEELF 923
Query: 280 NTLSLVRQE 288
+ L+ + E
Sbjct: 924 HLLNFLTPE 932
Score = 42 (19.8 bits), Expect = 3.5e-21, Sum P(3) = 3.5e-21
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 84 NIAGGIDLDELKNSTSTGGGNGCIISHAPGT 114
N+A ++ + GGG G ++ AP T
Sbjct: 225 NVAAAVE--SMVTKVDAGGGGGPALATAPPT 253
Score = 37 (18.1 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 447 EPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDP 490
+P T E L + +E +E DG+++VK + ++ P
Sbjct: 1563 QPNTPAPEDLSKTEDIKELEEKTEGDGEKEVKGSRQEDEIIEIP 1606
>SGD|S000000966 [details] [associations]
symbol:CHD1 "Chromatin remodeler that regulates various
aspects of transcription" species:4932 "Saccharomyces cerevisiae"
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0042766
"nucleosome mobilization" evidence=IDA] [GO:0000182 "rDNA binding"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IDA] [GO:0000124 "SAGA complex" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IGI;IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IDA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IMP]
[GO:0071441 "negative regulation of histone H3-K14 acetylation"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IGI;IPI] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0031490 "chromatin DNA binding"
evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IDA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=IGI;IMP] [GO:0071894 "histone H2B conserved C-terminal
lysine ubiquitination" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0035064 "methylated histone residue binding" evidence=IDA]
[GO:2000104 "negative regulation of DNA-dependent DNA replication"
evidence=IGI] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SGD:S000000966 Pfam:PF00385 GO:GO:0005739
GO:GO:0005524 GO:GO:2000104 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:BK006939 GO:GO:0000124 GO:GO:0046695 GO:GO:0004386
GO:GO:0034401 GO:GO:0006368 GO:GO:0035064 GO:GO:0031490
GO:GO:0042766 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
GO:GO:0016584 EMBL:U18917 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GO:GO:0006363 GO:GO:0008094 GO:GO:0006369
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 PIR:S30818 RefSeq:NP_011091.1
PDB:2DY7 PDB:2DY8 PDB:2H1E PDB:2XB0 PDB:3MWY PDB:3TED PDBsum:2DY7
PDBsum:2DY8 PDBsum:2H1E PDBsum:2XB0 PDBsum:3MWY PDBsum:3TED
ProteinModelPortal:P32657 SMR:P32657 DIP:DIP-6362N IntAct:P32657
MINT:MINT-618890 STRING:P32657 PaxDb:P32657 PeptideAtlas:P32657
EnsemblFungi:YER164W GeneID:856911 KEGG:sce:YER164W CYGD:YER164w
OMA:IKWQFMA OrthoDB:EOG4TF3TB SABIO-RK:P32657
EvolutionaryTrace:P32657 NextBio:983353 Genevestigator:P32657
GermOnline:YER164W GO:GO:0030874 GO:GO:0000182 GO:GO:0071441
GO:GO:2000616 GO:GO:0001178 Uniprot:P32657
Length = 1468
Score = 212 (79.7 bits), Expect = 3.6e-21, Sum P(3) = 3.6e-21
Identities = 53/153 (34%), Positives = 82/153 (53%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ + L ++ + L + G +DG +R+ SI+ N P S +
Sbjct: 713 RVLIFSQMVRMLDILGDYLSIK-----GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVF 767
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L ST+A GINL+ A VV+ D WNP + QA++RA+R+GQK V VY L++ +T+E
Sbjct: 768 LLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEE 827
Query: 558 DKLRRQARKVWWSNMVFPSSDGGGNDQTTASEP 590
+ L R +K+ + GN T +EP
Sbjct: 828 EVLERARKKMILEYAIISLGVTDGNKYTKKNEP 860
Score = 94 (38.1 bits), Expect = 3.6e-21, Sum P(3) = 3.6e-21
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
DE H +N ++ ++++L+ K R++++GTP QNN +EL
Sbjct: 513 DEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKEL 552
Score = 80 (33.2 bits), Expect = 3.6e-21, Sum P(3) = 3.6e-21
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDI 159
G NG I++ G GKT T+ F+ + + P +I+ P S + W + F+KW D+
Sbjct: 394 GDNG-ILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDL 451
>UNIPROTKB|J9NSS6 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000043290 Uniprot:J9NSS6
Length = 1379
Score = 185 (70.2 bits), Expect = 5.5e-21, Sum P(3) = 5.5e-21
Identities = 48/146 (32%), Positives = 81/146 (55%)
Query: 438 KVLVFSQYIEPLTLIMEQL--RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
+VL+FSQ + L ++ E L +H + ++ +DG + R+ +++ N S+
Sbjct: 809 RVLIFSQMVRMLDILAEYLTIKH-YPFQR------LDGSIKGEIRKQALDHFNADGSEDF 861
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T T+
Sbjct: 862 CFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTV 921
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGG 581
E + + R +K+ ++V D G
Sbjct: 922 EEEIIERAKKKMVLDHLVIQRMDTTG 947
Score = 113 (44.8 bits), Expect = 5.5e-21, Sum P(3) = 5.5e-21
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV---RQEFGEVLRT 295
DE H +NDD+ ++K L K+ R++++GTP QN+ +EL + L + + EF E
Sbjct: 617 DEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEE 676
Query: 296 VRKSGRE 302
GRE
Sbjct: 677 DHGKGRE 683
Score = 87 (35.7 bits), Expect = 5.5e-21, Sum P(3) = 5.5e-21
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDI 159
N I++ G GKT T+ FL H P +I+ P S L +W+ EF+ W +I
Sbjct: 503 NSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEI 559
>POMBASE|SPCP25A2.02c [details] [associations]
symbol:rhp26 "SNF2 family helicase Rhp26" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCP25A2.02c GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0003677 GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006283
HOGENOM:HOG000170952 KO:K10841 OrthoDB:EOG44TSGZ EMBL:AB022912
PIR:T50449 RefSeq:NP_588091.1 ProteinModelPortal:Q9UR24
STRING:Q9UR24 EnsemblFungi:SPCP25A2.02c.1 GeneID:2539473
KEGG:spo:SPCP25A2.02c NextBio:20800635 Uniprot:Q9UR24
Length = 973
Score = 191 (72.3 bits), Expect = 7.1e-21, Sum P(2) = 7.1e-21
Identities = 54/161 (33%), Positives = 82/161 (50%)
Query: 417 DPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MD 472
DPE K + + LL L + L+FSQ + L ++ ++ +V Y MD
Sbjct: 620 DPEKSGKLKVIRALLTLWKKQGHRTLLFSQTRQMLDIL------EIGLKDLPDVHYCRMD 673
Query: 473 GKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAI 532
G + RQ ++ N + + L +T+ G+NL GA RV+L D WNP + QA
Sbjct: 674 GSTSIALRQDLVDNFNK-NEYFDVFLLTTRVGGLGVNLTGADRVILFDPDWNPSTDAQAR 732
Query: 533 SRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
RA+RLGQK+ V VY L+T+ T+E RQ K + +N +
Sbjct: 733 ERAWRLGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNKI 773
Score = 142 (55.0 bits), Expect = 7.1e-21, Sum P(2) = 7.1e-21
Identities = 71/268 (26%), Positives = 112/268 (41%)
Query: 36 NSRDSG-FDSQTG-CDPFTHAQGTVWE---LVPRDVRKKMFPHQREGFEFIWKNIAGGID 90
N++D G F+ + P +G +E +P D+R +F +Q +++W
Sbjct: 238 NNKDRGEFEGKDEWLLPHPSKKGQTFEGGFTIPGDIRPHLFRYQVTCVQWLW-------- 289
Query: 91 LDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWE 149
EL GG II G GKT + FL + +P +I+ P +++ W
Sbjct: 290 --ELY-CQEAGG----IIGDEMGLGKTIQIVSFLSSLHHSGKFQKPALIVCPATLMKQWV 342
Query: 150 EEFKKWGIDIPFYNLNKPELSGK---------ENNGAVALMDNRKRGRGKVGLIRYVKLY 200
EF W + L+ SG+ E++ + + + K G Y
Sbjct: 343 NEFHTWWAPLRVVVLHATG-SGQRASREKRQYESDASESEAEESKTSIKLRGASSSFHRY 401
Query: 201 SWKMGTGILGLSYRLFEKLVSGDELSGILLDLP---GLFVFDEGHTPRNDDTCMFKALSR 257
+ + + + L +G + G L+ LP G V DEGH RN D+ + + +
Sbjct: 402 AKNLVESVFTRGHILITTY-AGLRIYGDLI-LPREWGYCVLDEGHKIRNPDSEISISCKQ 459
Query: 258 IKTRRRIILSGTPFQNNFQELENTLSLV 285
I+T RIILSGTP QNN EL N V
Sbjct: 460 IRTVNRIILSGTPIQNNLTELWNLFDFV 487
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 195 (73.7 bits), Expect = 7.2e-21, Sum P(3) = 7.2e-21
Identities = 52/177 (29%), Positives = 90/177 (50%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ ++ +++ L +R+ E +DG + R +I+ N P S+ I
Sbjct: 471 RVLIFSQ----MSRVLDILEDYCYFRD-YEYCRIDGSTSHEDRIEAIDEYNAPDSEKFIF 525
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L +T+A GINL A V+L D WNP + QA+ RA+R+GQK+ V V+ +T + +E
Sbjct: 526 LLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEKAIEE 585
Query: 558 DKLRRQARKVWWSNMVFPSSD--GGGNDQTTASEPLEDKILEEMAQLYNNPSETLIN 612
L R A+K+ +V N+ + + L I +++ N T+++
Sbjct: 586 KVLERAAQKLRLDQLVIQQGRQMNSNNNVGNSKDDLIGMIQHGAKEVFENSKGTMLD 642
Score = 104 (41.7 bits), Expect = 7.2e-21, Sum P(3) = 7.2e-21
Identities = 40/150 (26%), Positives = 67/150 (44%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS-LVRQEFGEVLRT 295
V DE H +N+D+ + K + +R R++++GTP QNN EL L+ L+ FG+
Sbjct: 265 VVDEAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHELWALLNFLLPDVFGD---- 320
Query: 296 VRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPFVNVH-KGTVLQESLPGLR 354
E +++ + + R D ++PF+ K V + LP +
Sbjct: 321 -SDQFDEAFDNQNSEELDEEEK--QRRQDKAVSELHQLLSPFLLRRVKADVEKSLLPKIE 377
Query: 355 HSVVILQPD---EFQKRLC-KAVEGVKSFV 380
+V I D E+ KRL K ++ V V
Sbjct: 378 TNVYIGMTDMQVEWYKRLLEKDIDAVNGVV 407
Score = 80 (33.2 bits), Expect = 7.2e-21, Sum P(3) = 7.2e-21
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 107 IISHAPGTGKTGLTLVFLQ--AYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDI 159
I++ G GKT T+ FL Y+K H ++I P+S L W EF KW D+
Sbjct: 161 ILADEMGLGKTLQTISFLGYLRYIK-HIDGPFIVIVPKSTLDNWRREFAKWTPDV 214
Score = 38 (18.4 bits), Expect = 4.1e-14, Sum P(3) = 4.1e-14
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 300 GREISKAKHASLISSIGRCANH 321
G+ K + +++ + +C NH
Sbjct: 408 GKREGKTRLLNIVMQLRKCCNH 429
Score = 37 (18.1 bits), Expect = 9.4e-10, Sum P(3) = 9.4e-10
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 21 WREYNNVDPSFLDDLNSRDSGFDSQ 45
W N + P D + D FD+Q
Sbjct: 307 WALLNFLLPDVFGDSDQFDEAFDNQ 331
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 195 (73.7 bits), Expect = 7.2e-21, Sum P(3) = 7.2e-21
Identities = 52/177 (29%), Positives = 90/177 (50%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ ++ +++ L +R+ E +DG + R +I+ N P S+ I
Sbjct: 471 RVLIFSQ----MSRVLDILEDYCYFRD-YEYCRIDGSTSHEDRIEAIDEYNAPDSEKFIF 525
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L +T+A GINL A V+L D WNP + QA+ RA+R+GQK+ V V+ +T + +E
Sbjct: 526 LLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQKKQVKVFRFVTEKAIEE 585
Query: 558 DKLRRQARKVWWSNMVFPSSD--GGGNDQTTASEPLEDKILEEMAQLYNNPSETLIN 612
L R A+K+ +V N+ + + L I +++ N T+++
Sbjct: 586 KVLERAAQKLRLDQLVIQQGRQMNSNNNVGNSKDDLIGMIQHGAKEVFENSKGTMLD 642
Score = 104 (41.7 bits), Expect = 7.2e-21, Sum P(3) = 7.2e-21
Identities = 40/150 (26%), Positives = 67/150 (44%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS-LVRQEFGEVLRT 295
V DE H +N+D+ + K + +R R++++GTP QNN EL L+ L+ FG+
Sbjct: 265 VVDEAHRIKNEDSSLSKIIRLFYSRNRLLITGTPLQNNLHELWALLNFLLPDVFGD---- 320
Query: 296 VRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPFVNVH-KGTVLQESLPGLR 354
E +++ + + R D ++PF+ K V + LP +
Sbjct: 321 -SDQFDEAFDNQNSEELDEEEK--QRRQDKAVSELHQLLSPFLLRRVKADVEKSLLPKIE 377
Query: 355 HSVVILQPD---EFQKRLC-KAVEGVKSFV 380
+V I D E+ KRL K ++ V V
Sbjct: 378 TNVYIGMTDMQVEWYKRLLEKDIDAVNGVV 407
Score = 80 (33.2 bits), Expect = 7.2e-21, Sum P(3) = 7.2e-21
Identities = 21/55 (38%), Positives = 29/55 (52%)
Query: 107 IISHAPGTGKTGLTLVFLQ--AYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDI 159
I++ G GKT T+ FL Y+K H ++I P+S L W EF KW D+
Sbjct: 161 ILADEMGLGKTLQTISFLGYLRYIK-HIDGPFIVIVPKSTLDNWRREFAKWTPDV 214
Score = 38 (18.4 bits), Expect = 4.1e-14, Sum P(3) = 4.1e-14
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 300 GREISKAKHASLISSIGRCANH 321
G+ K + +++ + +C NH
Sbjct: 408 GKREGKTRLLNIVMQLRKCCNH 429
Score = 37 (18.1 bits), Expect = 9.4e-10, Sum P(3) = 9.4e-10
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 21 WREYNNVDPSFLDDLNSRDSGFDSQ 45
W N + P D + D FD+Q
Sbjct: 307 WALLNFLLPDVFGDSDQFDEAFDNQ 331
>UNIPROTKB|E1C1A9 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AADN02041467 EMBL:AADN02041468 EMBL:AADN02041469
EMBL:AADN02041470 IPI:IPI00575702 Ensembl:ENSGALT00000011260
Uniprot:E1C1A9
Length = 1727
Score = 185 (70.2 bits), Expect = 7.5e-21, Sum P(3) = 7.5e-21
Identities = 48/146 (32%), Positives = 81/146 (55%)
Query: 438 KVLVFSQYIEPLTLIMEQL--RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
+VL+FSQ + L ++ E L +H + ++ +DG + R+ +++ N S+
Sbjct: 811 RVLIFSQMVRMLDILAEYLTIKH-YPFQR------LDGSIKGEIRKQALDHFNADGSEDF 863
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T T+
Sbjct: 864 CFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTV 923
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGG 581
E + + R +K+ ++V D G
Sbjct: 924 EEEIIERAKKKMVLDHLVIQRMDTTG 949
Score = 115 (45.5 bits), Expect = 7.5e-21, Sum P(3) = 7.5e-21
Identities = 35/115 (30%), Positives = 57/115 (49%)
Query: 197 VKLYSWKMGTGILGLSYRL-FEKLVSGDEL----SGILLDLPGLFV-FDEGHTPRNDDTC 250
++ Y W I S RL F L++ E+ +L + F+ DE H +NDD+
Sbjct: 576 IREYEW-----IHSQSKRLKFNALITTYEILLKDKAVLGSISWAFLGVDEAHRLKNDDSL 630
Query: 251 MFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV---RQEFGEVLRTVRKSGRE 302
++K L K+ R++++GTP QN+ +EL + L + + EF E GRE
Sbjct: 631 LYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGKGRE 685
Score = 87 (35.7 bits), Expect = 7.5e-21, Sum P(3) = 7.5e-21
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDI 159
N I++ G GKT T+ FL H P +++ P S L +W+ EF+ W +I
Sbjct: 505 NSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLVVVPLSTLTSWQREFEVWAPEI 561
Score = 55 (24.4 bits), Expect = 2.9e-07, Sum P(3) = 2.9e-07
Identities = 19/81 (23%), Positives = 36/81 (44%)
Query: 414 LKLDPEAGIKTRFLLILLELSTNEKVLVFS-QYIEPLTLIMEQLRHRFNWREGQEVLYMD 472
+K DPE + + L + + K L Y+ L L+ + L + N ++G+E
Sbjct: 1288 IKTDPELKLSDKILPVETDKKPQGKQLQTRVDYL--LKLLKKDLEKKENMKDGEEGKLKK 1345
Query: 473 GKQDVKKRQSSINVLNDPSSQ 493
K VKK + V ++ ++
Sbjct: 1346 RKPRVKKENKAPKVKDEHGNE 1366
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 205 (77.2 bits), Expect = 9.4e-21, Sum P(4) = 9.4e-21
Identities = 48/121 (39%), Positives = 73/121 (60%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGK--QDVKKRQSSINVLNDPSSQAR 495
+VL+FSQ +T +++ L WR G E +DG+ + ++++ +I N P+S
Sbjct: 517 RVLIFSQ----MTRLLDILEDYCMWR-GYEYCRLDGQTPHEEREKKEAIEAFNAPNSSKF 571
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
I + ST+A GINL A V+L D WNP V+ QA+ RA+R+GQK+ V V+ LIT T+
Sbjct: 572 IFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTV 631
Query: 556 E 556
E
Sbjct: 632 E 632
Score = 89 (36.4 bits), Expect = 9.4e-21, Sum P(4) = 9.4e-21
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
V DE H +N+ + + + + K+ R++L+GTP QNN EL
Sbjct: 321 VIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHEL 362
Score = 88 (36.0 bits), Expect = 9.4e-21, Sum P(4) = 9.4e-21
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP---VIIAPRSMLLTWEEEFKKW 155
G NG I++ G GKT T+ L Y+K H R P +++ P+S L W EFK+W
Sbjct: 213 GVNG-ILADEMGLGKTLQTIALL-GYLK-HYRNIPGPHMVLVPKSTLYNWMNEFKRW 266
Score = 50 (22.7 bits), Expect = 0.00018, Sum P(4) = 0.00018
Identities = 22/82 (26%), Positives = 34/82 (41%)
Query: 524 NPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS---NMVFPSSDGG 580
NP + A+ A R QK++ L ET E +KL Q W N +++
Sbjct: 821 NPDIPNPAV--AQREEQKKIDGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKY 878
Query: 581 GNDQT-TASEPLEDKILEEMAQ 601
G D + +E K EE+ +
Sbjct: 879 GRDDIDNIAREVEGKSPEEVME 900
Score = 37 (18.1 bits), Expect = 9.4e-21, Sum P(4) = 9.4e-21
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 296 VRKSGREISKAKHASLISSIGRCANH 321
V S ++ K + +++ + +C NH
Sbjct: 450 VLNSAGKMDKMRLLNILMQLRKCCNH 475
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 185 (70.2 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
Identities = 48/146 (32%), Positives = 81/146 (55%)
Query: 438 KVLVFSQYIEPLTLIMEQL--RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
+VL+FSQ + L ++ E L +H + ++ +DG + R+ +++ N S+
Sbjct: 778 RVLIFSQMVRMLDILAEYLTIKH-YPFQR------LDGSIKGEIRKQALDHFNADGSEDF 830
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T T+
Sbjct: 831 CFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTV 890
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGG 581
E + + R +K+ ++V D G
Sbjct: 891 EEEIIERAKKKMVLDHLVIQRMDTTG 916
Score = 113 (44.8 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV---RQEFGEVLRT 295
DE H +NDD+ ++K L K+ R++++GTP QN+ +EL + L + + EF E
Sbjct: 586 DEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEE 645
Query: 296 VRKSGRE 302
GRE
Sbjct: 646 DHGKGRE 652
Score = 87 (35.7 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDI 159
N I++ G GKT T+ FL H P +I+ P S L +W+ EF+ W +I
Sbjct: 472 NSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEI 528
>UNIPROTKB|D4AD08 [details] [associations]
symbol:Chd2 "Chromodomain helicase DNA binding protein 2
(Predicted)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:CH473980
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 KO:K11367 CTD:1106 OrthoDB:EOG4QRH36
IPI:IPI00778855 RefSeq:NP_001100993.1 UniGene:Rn.225034
Ensembl:ENSRNOT00000055829 GeneID:308738 KEGG:rno:308738
RGD:1310056 NextBio:659434 Uniprot:D4AD08
Length = 1834
Score = 187 (70.9 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
Identities = 59/199 (29%), Positives = 100/199 (50%)
Query: 438 KVLVFSQYIEPLTLIMEQL--RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
+VL+FSQ + L ++ E L +H + ++ +DG + R+ +++ N S+
Sbjct: 816 RVLIFSQMVRMLDILAEYLTIKH-YPFQR------LDGSIKGEIRKQALDHFNADGSEDF 868
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T T+
Sbjct: 869 CFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTV 928
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGG------NDQTTASEPLEDKILEEMAQLYNNPSET 609
E + + R +K+ ++V D G N + S P EE+ + +E
Sbjct: 929 EEEIIERAKKKMVLDHLVIQRMDTTGRTVLENNSGRSNSNPFNK---EELTAILKFGAED 985
Query: 610 LINAII---PQPKETELIE 625
L I +P+E ++ E
Sbjct: 986 LFKEIEGEESEPQEMDIDE 1004
Score = 113 (44.8 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV---RQEFGEVLRT 295
DE H +NDD+ ++K L K+ R++++GTP QN+ +EL + L + + EF E
Sbjct: 624 DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEE 683
Query: 296 VRKSGRE 302
GRE
Sbjct: 684 DHGKGRE 690
Score = 86 (35.3 bits), Expect = 1.1e-20, Sum P(3) = 1.1e-20
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDI 159
N I++ G GKT T+ FL H P +I+ P S L +W+ EF+ W ++
Sbjct: 510 NSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEV 566
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 185 (70.2 bits), Expect = 1.2e-20, Sum P(3) = 1.2e-20
Identities = 48/146 (32%), Positives = 81/146 (55%)
Query: 438 KVLVFSQYIEPLTLIMEQL--RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
+VL+FSQ + L ++ E L +H + ++ +DG + R+ +++ N S+
Sbjct: 798 RVLIFSQMVRMLDILAEYLTIKH-YPFQR------LDGSIKGEIRKQALDHFNADGSEDF 850
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T T+
Sbjct: 851 CFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTV 910
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGG 581
E + + R +K+ ++V D G
Sbjct: 911 EEEIIERAKKKMVLDHLVIQRMDTTG 936
Score = 113 (44.8 bits), Expect = 1.2e-20, Sum P(3) = 1.2e-20
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV---RQEFGEVLRT 295
DE H +NDD+ ++K L K+ R++++GTP QN+ +EL + L + + EF E
Sbjct: 606 DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEE 665
Query: 296 VRKSGRE 302
GRE
Sbjct: 666 DHGKGRE 672
Score = 87 (35.7 bits), Expect = 1.2e-20, Sum P(3) = 1.2e-20
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDI 159
N I++ G GKT T+ FL H P +I+ P S L +W+ EF+ W +I
Sbjct: 492 NSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEI 548
>FB|FBgn0250786 [details] [associations]
symbol:Chd1 "Chromodomain-helicase-DNA-binding protein 1"
species:7227 "Drosophila melanogaster" [GO:0005705 "polytene
chromosome interband" evidence=IDA] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005703 "polytene chromosome puff" evidence=IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0035042 "fertilization,
exchange of chromosomal proteins" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
EMBL:AE014134 GO:GO:0006355 GO:GO:0003677 GO:GO:0048477
GO:GO:0006351 GO:GO:0003682 GO:GO:0004386 GO:GO:0007476
InterPro:IPR016197 SUPFAM:SSF54160 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598 GO:GO:0005703
InterPro:IPR025260 Pfam:PF13907 EMBL:L77907 PIR:T13944
RefSeq:NP_477197.1 ProteinModelPortal:Q7KU24 SMR:Q7KU24
STRING:Q7KU24 PaxDb:Q7KU24 PRIDE:Q7KU24 EnsemblMetazoa:FBtr0077674
GeneID:33505 KEGG:dme:Dmel_CG3733 UCSC:CG3733-RA CTD:1105
FlyBase:FBgn0250786 GeneTree:ENSGT00560000076896 InParanoid:Q7KU24
KO:K11367 OrthoDB:EOG45MKM5 PhylomeDB:Q7KU24 ChiTaRS:CHD1
GenomeRNAi:33505 NextBio:783939 Bgee:Q7KU24 GO:GO:0005705
GO:GO:0035042 Uniprot:Q7KU24
Length = 1883
Score = 191 (72.3 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
Identities = 51/156 (32%), Positives = 85/156 (54%)
Query: 427 LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSIN 485
LL L+ T +VL+FSQ + L ++ + L+ R F ++ +DG + R+ +++
Sbjct: 844 LLCRLK-ETGHRVLIFSQMVRMLDVLADYLQKRHFPFQR------LDGSIKGEMRRQALD 896
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
N SQ L ST+A GINL A V++ D WNP + QA +RA+R+GQK V+
Sbjct: 897 HFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVN 956
Query: 546 VYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGG 581
+Y L+T+ ++E + R +K+ ++V D G
Sbjct: 957 IYRLVTARSVEEQIVERAKQKMVLDHLVIQRMDTTG 992
Score = 107 (42.7 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
+E ++ + G L L V DE H +NDD+ ++K+L T R++++GTP QN+
Sbjct: 640 YEIVLKDKQFLGTL-QWAALLV-DEAHRLKNDDSLLYKSLKEFDTNHRLLITGTPLQNSL 697
Query: 276 QEL 278
+EL
Sbjct: 698 KEL 700
Score = 92 (37.4 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVI-IAPRSMLLTWEEEFKKWGIDI 159
N I++ G GKT T+ FL + K+H P + + P S + W+ EF W D+
Sbjct: 547 NSVILADEMGLGKTIQTICFLYSLFKIHHLYGPFLCVVPLSTMTAWQREFDLWAPDM 603
Score = 43 (20.2 bits), Expect = 2.5e-05, Sum P(4) = 2.5e-05
Identities = 19/69 (27%), Positives = 29/69 (42%)
Query: 399 QFFESFDVDSAKLARLKLDPEAG---IKTRFLLILLELSTN-EKVLVFSQYIEPLTLIME 454
QF + +K A P A + F + L +S N +K+L Q ++PL IM
Sbjct: 1241 QFLHEHKEEESKTAATDETPGAKQRRARATFSVKLGGVSFNAKKLLACEQELQPLNEIMP 1300
Query: 455 QL-RHRFNW 462
+ R W
Sbjct: 1301 SMPEERQQW 1309
Score = 40 (19.1 bits), Expect = 1.4e-20, Sum P(4) = 1.4e-20
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 31 FLDDLNSRDSGFDSQTGCDPFTHAQG 56
F DD DS D +G D + A+G
Sbjct: 87 FTDD--QEDSSSDGSSGSDSDSDAEG 110
Score = 40 (19.1 bits), Expect = 7.6e-14, Sum P(4) = 7.6e-14
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 343 GTVLQESLPGLRHSVVILQPDEF 365
GT LQ SL L + + PD+F
Sbjct: 690 GTPLQNSLKELWALLHFIMPDKF 712
>UNIPROTKB|G3MXX3 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:DAAA02051958 Ensembl:ENSBTAT00000065179
Uniprot:G3MXX3
Length = 1810
Score = 185 (70.2 bits), Expect = 1.4e-20, Sum P(3) = 1.4e-20
Identities = 48/146 (32%), Positives = 81/146 (55%)
Query: 438 KVLVFSQYIEPLTLIMEQL--RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
+VL+FSQ + L ++ E L +H + ++ +DG + R+ +++ N S+
Sbjct: 791 RVLIFSQMVRMLDILAEYLTIKH-YPFQR------LDGSIKGEIRKQALDHFNADGSEDF 843
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T T+
Sbjct: 844 CFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTV 903
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGG 581
E + + R +K+ ++V D G
Sbjct: 904 EEEIIERAKKKMVLDHLVIQRMDTTG 929
Score = 113 (44.8 bits), Expect = 1.4e-20, Sum P(3) = 1.4e-20
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV---RQEFGEVLRT 295
DE H +NDD+ ++K L K+ R++++GTP QN+ +EL + L + + EF E
Sbjct: 599 DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEE 658
Query: 296 VRKSGRE 302
GRE
Sbjct: 659 DHGKGRE 665
Score = 87 (35.7 bits), Expect = 1.4e-20, Sum P(3) = 1.4e-20
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDI 159
N I++ G GKT T+ FL H P +I+ P S L +W+ EF+ W +I
Sbjct: 485 NSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEI 541
>UNIPROTKB|O14647 [details] [associations]
symbol:CHD2 "Chromodomain-helicase-DNA-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 EMBL:CH471101
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
EMBL:AF006514 EMBL:BT007050 EMBL:FJ515838 EMBL:AC013394
EMBL:BC007347 EMBL:CR978407 IPI:IPI00023109 IPI:IPI00815893
RefSeq:NP_001036037.1 RefSeq:NP_001262.3 UniGene:Hs.220864
ProteinModelPortal:O14647 SMR:O14647 IntAct:O14647 STRING:O14647
PhosphoSite:O14647 PaxDb:O14647 PRIDE:O14647 DNASU:1106
Ensembl:ENST00000394196 Ensembl:ENST00000420239
Ensembl:ENST00000557381 GeneID:1106 KEGG:hsa:1106 UCSC:uc002bso.1
UCSC:uc002bsp.3 CTD:1106 GeneCards:GC15P093533 HGNC:HGNC:1917
MIM:602119 neXtProt:NX_O14647 PharmGKB:PA26453 InParanoid:O14647
OMA:AHSWCKN OrthoDB:EOG4QRH36 ChiTaRS:CHD2 GenomeRNAi:1106
NextBio:4584 ArrayExpress:O14647 Bgee:O14647 CleanEx:HS_CHD2
Genevestigator:O14647 GermOnline:ENSG00000173575 Uniprot:O14647
Length = 1828
Score = 185 (70.2 bits), Expect = 1.5e-20, Sum P(3) = 1.5e-20
Identities = 48/146 (32%), Positives = 81/146 (55%)
Query: 438 KVLVFSQYIEPLTLIMEQL--RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
+VL+FSQ + L ++ E L +H + ++ +DG + R+ +++ N S+
Sbjct: 809 RVLIFSQMVRMLDILAEYLTIKH-YPFQR------LDGSIKGEIRKQALDHFNADGSEDF 861
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T T+
Sbjct: 862 CFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTV 921
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGG 581
E + + R +K+ ++V D G
Sbjct: 922 EEEIIERAKKKMVLDHLVIQRMDTTG 947
Score = 113 (44.8 bits), Expect = 1.5e-20, Sum P(3) = 1.5e-20
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV---RQEFGEVLRT 295
DE H +NDD+ ++K L K+ R++++GTP QN+ +EL + L + + EF E
Sbjct: 617 DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEE 676
Query: 296 VRKSGRE 302
GRE
Sbjct: 677 DHGKGRE 683
Score = 87 (35.7 bits), Expect = 1.5e-20, Sum P(3) = 1.5e-20
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDI 159
N I++ G GKT T+ FL H P +I+ P S L +W+ EF+ W +I
Sbjct: 503 NSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEI 559
>UNIPROTKB|E2R5Z7 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000017614
NextBio:20854276 Uniprot:E2R5Z7
Length = 1831
Score = 185 (70.2 bits), Expect = 1.5e-20, Sum P(3) = 1.5e-20
Identities = 48/146 (32%), Positives = 81/146 (55%)
Query: 438 KVLVFSQYIEPLTLIMEQL--RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
+VL+FSQ + L ++ E L +H + ++ +DG + R+ +++ N S+
Sbjct: 812 RVLIFSQMVRMLDILAEYLTIKH-YPFQR------LDGSIKGEIRKQALDHFNADGSEDF 864
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T T+
Sbjct: 865 CFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTV 924
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGG 581
E + + R +K+ ++V D G
Sbjct: 925 EEEIIERAKKKMVLDHLVIQRMDTTG 950
Score = 113 (44.8 bits), Expect = 1.5e-20, Sum P(3) = 1.5e-20
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV---RQEFGEVLRT 295
DE H +NDD+ ++K L K+ R++++GTP QN+ +EL + L + + EF E
Sbjct: 620 DEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEE 679
Query: 296 VRKSGRE 302
GRE
Sbjct: 680 DHGKGRE 686
Score = 87 (35.7 bits), Expect = 1.5e-20, Sum P(3) = 1.5e-20
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDI 159
N I++ G GKT T+ FL H P +I+ P S L +W+ EF+ W +I
Sbjct: 506 NSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEI 562
>UNIPROTKB|F1SA77 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000002524
Uniprot:F1SA77
Length = 1831
Score = 185 (70.2 bits), Expect = 1.5e-20, Sum P(3) = 1.5e-20
Identities = 48/146 (32%), Positives = 81/146 (55%)
Query: 438 KVLVFSQYIEPLTLIMEQL--RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
+VL+FSQ + L ++ E L +H + ++ +DG + R+ +++ N S+
Sbjct: 811 RVLIFSQMVRMLDILAEYLTIKH-YPFQR------LDGSIKGEIRKQALDHFNADGSEDF 863
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T T+
Sbjct: 864 CFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTV 923
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGG 581
E + + R +K+ ++V D G
Sbjct: 924 EEEIIERAKKKMVLDHLVIQRMDTTG 949
Score = 113 (44.8 bits), Expect = 1.5e-20, Sum P(3) = 1.5e-20
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV---RQEFGEVLRT 295
DE H +NDD+ ++K L K+ R++++GTP QN+ +EL + L + + EF E
Sbjct: 619 DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEE 678
Query: 296 VRKSGRE 302
GRE
Sbjct: 679 DHGKGRE 685
Score = 87 (35.7 bits), Expect = 1.5e-20, Sum P(3) = 1.5e-20
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDI 159
N I++ G GKT T+ FL H P +I+ P S L +W+ EF+ W +I
Sbjct: 505 NSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEI 561
>UNIPROTKB|J9PA90 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000045903 Uniprot:J9PA90
Length = 1840
Score = 185 (70.2 bits), Expect = 1.5e-20, Sum P(3) = 1.5e-20
Identities = 48/146 (32%), Positives = 81/146 (55%)
Query: 438 KVLVFSQYIEPLTLIMEQL--RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
+VL+FSQ + L ++ E L +H + ++ +DG + R+ +++ N S+
Sbjct: 822 RVLIFSQMVRMLDILAEYLTIKH-YPFQR------LDGSIKGEIRKQALDHFNADGSEDF 874
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T T+
Sbjct: 875 CFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTV 934
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGG 581
E + + R +K+ ++V D G
Sbjct: 935 EEEIIERAKKKMVLDHLVIQRMDTTG 960
Score = 113 (44.8 bits), Expect = 1.5e-20, Sum P(3) = 1.5e-20
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV---RQEFGEVLRT 295
DE H +NDD+ ++K L K+ R++++GTP QN+ +EL + L + + EF E
Sbjct: 630 DEAHRLKNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEE 689
Query: 296 VRKSGRE 302
GRE
Sbjct: 690 DHGKGRE 696
Score = 87 (35.7 bits), Expect = 1.5e-20, Sum P(3) = 1.5e-20
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDI 159
N I++ G GKT T+ FL H P +I+ P S L +W+ EF+ W +I
Sbjct: 516 NSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEI 572
>ASPGD|ASPL0000061821 [details] [associations]
symbol:AN10043 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001308 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EnsemblFungi:CADANIAT00002546 HOGENOM:HOG000175622 OMA:MEIEESV
Uniprot:C8VUX5
Length = 648
Score = 202 (76.2 bits), Expect = 1.6e-20, Sum P(3) = 1.6e-20
Identities = 54/164 (32%), Positives = 88/164 (53%)
Query: 436 NEKVLVFSQYIEPLTL---IMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVL-NDPS 491
N+KV++FS + + L L ++E + +F+++ G+ +DG R S+ + NDP
Sbjct: 348 NKKVIIFSGFDQTLDLCEDLLEMEKAQFSFKYGR----LDGSTSSAWRNLSVFLFQNDP- 402
Query: 492 SQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLIT 551
+ + L ST+A EG+NLV +S V+ LD WNP V RQA SR +R+GQ + V ++ +
Sbjct: 403 -RYMVFLLSTRAGGEGLNLVSSSIVIFLDDDWNPQVMRQAESRVHRIGQTQPVQIFRIHA 461
Query: 552 SETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKI 595
T+E RR +K + ++ V T E ED+I
Sbjct: 462 KGTVEDQMRRRMDKKAYLADKVMGEFGNNITHHTDLEETTEDEI 505
Score = 92 (37.4 bits), Expect = 1.6e-20, Sum P(3) = 1.6e-20
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
V DEGH +N + + + R+++ RI+L+GTP QN+ EL + L
Sbjct: 118 VLDEGHRIKNSRSKRTQGVYRLRSENRIVLTGTPIQNDLTELWSIL 163
Score = 72 (30.4 bits), Expect = 1.6e-20, Sum P(3) = 1.6e-20
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRC--RPVIIAPRSMLLTWEEEFKKW 155
G G I++ G GKT L Q Y+K + R + +++ P S+L TW E +W
Sbjct: 8 GIGGILADDMGLGKTLQALSLFQ-YVKDNERADSKFLVVCPLSVLNTWMSEISRW 61
>SGD|S000003796 [details] [associations]
symbol:RAD26 "Protein involved in transcription-coupled
nucleotide excision repair" species:4932 "Saccharomyces cerevisiae"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair"
evidence=IGI;IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SGD:S000003796 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 EMBL:BK006943 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006283 GO:GO:0008094
GeneTree:ENSGT00590000083118 HOGENOM:HOG000170952 KO:K10841
EMBL:X81635 EMBL:L26910 EMBL:Z49535 PIR:JC2227 RefSeq:NP_012569.1
ProteinModelPortal:P40352 SMR:P40352 DIP:DIP-3008N IntAct:P40352
MINT:MINT-439055 STRING:P40352 PaxDb:P40352 PeptideAtlas:P40352
EnsemblFungi:YJR035W GeneID:853492 KEGG:sce:YJR035W CYGD:YJR035w
OMA:DENRIME OrthoDB:EOG44TSGZ NextBio:974125 Genevestigator:P40352
GermOnline:YJR035W Uniprot:P40352
Length = 1085
Score = 199 (75.1 bits), Expect = 2.0e-20, Sum P(3) = 2.0e-20
Identities = 51/159 (32%), Positives = 85/159 (53%)
Query: 417 DPEAGIKTRFL--LILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGK 474
DP+ K + + L+LL K L+F+Q + L ++ E + + L MDG
Sbjct: 646 DPKRSGKMQVVKQLLLLWHKQGYKALLFTQSRQMLDILEEFISTKDPDLSHLNYLRMDGT 705
Query: 475 QDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISR 534
++K RQS ++ N+ S + L +T+ G+NL GA+R+++ D WNP + QA R
Sbjct: 706 TNIKGRQSLVDRFNNESFD--VFLLTTRVGGLGVNLTGANRIIIFDPDWNPSTDMQARER 763
Query: 535 AYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
A+R+GQKR V +Y L+ ++E RQ K + +N +
Sbjct: 764 AWRIGQKREVSIYRLMVGGSIEEKIYHRQIFKQFLTNRI 802
Score = 112 (44.5 bits), Expect = 2.0e-20, Sum P(3) = 2.0e-20
Identities = 23/42 (54%), Positives = 27/42 (64%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
V DEGH RN D+ + ++KT RIILSGTP QNN EL
Sbjct: 467 VLDEGHKIRNPDSEISLTCKKLKTHNRIILSGTPIQNNLTEL 508
Score = 64 (27.6 bits), Expect = 2.0e-20, Sum P(3) = 2.0e-20
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKW 155
G II G GKT + F+ A PV I+ P +++ W EF+ W
Sbjct: 317 GGIIGDEMGLGKTIQVIAFIAALHHSGLLTGPVLIVCPATVMKQWCNEFQHW 368
>POMBASE|SPAC1783.05 [details] [associations]
symbol:hrp1 "ATP-dependent DNA helicase Hrp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0000779 "condensed chromosome, centromeric
region" evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0007076 "mitotic chromosome
condensation" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IPI] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0035067 "negative
regulation of histone acetylation" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0048096 "chromatin-mediated maintenance
of transcription" evidence=TAS] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 PomBase:SPAC1783.05 Pfam:PF00385 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944
GO:GO:0030466 GO:GO:0000122 GO:GO:0000790 GO:GO:0030702
GO:GO:0004003 GO:GO:0007076 GO:GO:0048096 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000779 GO:GO:0035067 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0016592 GO:GO:0006369 KO:K11367
HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB EMBL:X99021 EMBL:AB027852
PIR:T43334 PIR:T50107 RefSeq:NP_593660.1 ProteinModelPortal:Q9US25
MINT:MINT-4979817 STRING:Q9US25 EnsemblFungi:SPAC1783.05.1
GeneID:2542363 KEGG:spo:SPAC1783.05 OMA:VERVIKW NextBio:20803422
GO:GO:0060303 Uniprot:Q9US25
Length = 1373
Score = 203 (76.5 bits), Expect = 2.2e-20, Sum P(3) = 2.2e-20
Identities = 49/131 (37%), Positives = 76/131 (58%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI 496
+VL+FSQ + L ++ E + R +N++ +DG R+ SI+ N P S +
Sbjct: 722 RVLIFSQMVRMLNILGEYMSLRGYNYQR------LDGTIPASVRRVSIDHFNAPDSPDFV 775
Query: 497 MLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
L ST+A GINL A V++ D WNP + QA++RA+R+GQK V+VY ++ +T+E
Sbjct: 776 FLLSTRAGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVNVYRFLSKDTVE 835
Query: 557 WDKLRRQARKV 567
D L R RK+
Sbjct: 836 EDILERARRKM 846
Score = 109 (43.4 bits), Expect = 2.2e-20, Sum P(3) = 2.2e-20
Identities = 26/90 (28%), Positives = 47/90 (52%)
Query: 196 YVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKAL 255
Y+ S K+ IL +Y K EL+ I DE H +N ++ +++ L
Sbjct: 486 YLSTNSRKLKFNILLTTYEYILK--DKQELNNIRWQY---LAIDEAHRLKNSESSLYETL 540
Query: 256 SRIKTRRRIILSGTPFQNNFQELENTLSLV 285
S+ +T R++++GTP QNN +EL + ++ +
Sbjct: 541 SQFRTANRLLITGTPLQNNLKELASLVNFL 570
Score = 66 (28.3 bits), Expect = 2.2e-20, Sum P(3) = 2.2e-20
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDI 159
NG I++ G GKT T+ FL + + P +I+ P S + W+E W D+
Sbjct: 410 NG-ILADEMGLGKTVQTVCFLSYLVHSLKQHGPFLIVVPLSTVPAWQETLANWTPDL 465
Score = 39 (18.8 bits), Expect = 3.1e-13, Sum P(3) = 3.1e-13
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 343 GTVLQESLPGLRHSVVILQPDEFQKR 368
GT LQ +L L V L P +F R
Sbjct: 553 GTPLQNNLKELASLVNFLMPGKFYIR 578
>UNIPROTKB|J9NRN3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 EMBL:AAEX03003895
EMBL:AAEX03003896 EMBL:AAEX03003897 Ensembl:ENSCAFT00000044104
Uniprot:J9NRN3
Length = 1195
Score = 179 (68.1 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 63/207 (30%), Positives = 98/207 (47%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID--I 159
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W D +
Sbjct: 692 GTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYV 751
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K S N + DN R KV R K K +L SY +L
Sbjct: 752 VTYTGDKESRSVIREN-EFSFEDNAIRSGKKV--FRMKKEVQIKFH--VLLTSY----EL 802
Query: 220 VSGDELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
++ D+ IL + V DE H +N+ + F+ L+ K +++L+GTP QNN +EL
Sbjct: 803 ITIDQ--AILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEEL 860
Query: 279 ENTLSLVRQEFGEVLRTVRKSGREISK 305
+ L+ + E L + +ISK
Sbjct: 861 FHLLNFLTPERFNNLEGFLEEFADISK 887
Score = 152 (58.6 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 40/105 (38%), Positives = 58/105 (55%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +Q
Sbjct: 1016 RVLIFSQMTKMLDLLEDFLEY-----EGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCF 1070
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKR 542
L ST+A GINL A V++ D WNP + QA SRA+R+GQ +
Sbjct: 1071 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNK 1115
>UNIPROTKB|F1N544 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:DAAA02048806
IPI:IPI00716282 Ensembl:ENSBTAT00000019119 ArrayExpress:F1N544
Uniprot:F1N544
Length = 1998
Score = 175 (66.7 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 62/210 (29%), Positives = 104/210 (49%)
Query: 406 VDSAKLARLKLDPEAGIKTRFLLILLELSTNE------KVLVFSQYIEPLTLIMEQLRHR 459
++S KL + A IK L+LL+ + +VL+FSQ + L L+ + L +
Sbjct: 1036 MESPKLPSGAYEGGALIKASGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDY- 1094
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
EG + +DG RQ +I+ N +Q L ST+A GINL A V++
Sbjct: 1095 ----EGYKYERIDGGITGALRQEAIDRFNAHGAQQFCFLLSTRAGGLGINLATADTVIIF 1150
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQA-RKVWWSNMVFPSSD 578
D WNP + QA SRA+R+GQ V +Y +T ++E +++ + A RK+ +++V
Sbjct: 1151 DSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE-ERITQVAKRKMMLTHLVVRPGL 1209
Query: 579 GGGNDQTTASEPLEDKILEEMAQLYNNPSE 608
G + E L+D + +L+ + +E
Sbjct: 1210 GSKAGSMSKQE-LDDILKFGTEELFKDENE 1238
Score = 160 (61.4 bits), Expect = 2.9e-20, Sum P(2) = 2.9e-20
Identities = 58/206 (28%), Positives = 95/206 (46%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWG--IDI 159
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W +
Sbjct: 750 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYV 809
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K + N + DN +G GK +K + ++ +L SY L
Sbjct: 810 VTYTGDKDSRAIIREN-EFSFEDNAIKG-GKKAF--KMKREA-QVKFHVLLTSYELIT-- 862
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ L I V DE H +N+ + F+ L+ K +++L+GTP QNN +EL
Sbjct: 863 IDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELF 919
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISK 305
+ L+ + E L + +ISK
Sbjct: 920 HLLNFLTPERFNNLEGFLEEFADISK 945
>DICTYBASE|DDB_G0281441 [details] [associations]
symbol:ercc6 "DNA excision repair protein 6"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0281441 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000152_GR GO:GO:0003677
EMBL:AAFI02000041 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0008094 KO:K10841
RefSeq:XP_640679.1 ProteinModelPortal:Q54TY2 STRING:Q54TY2
EnsemblProtists:DDB0232361 GeneID:8623063 KEGG:ddi:DDB_G0281441
InParanoid:Q54TY2 OMA:NIHKERW ProtClustDB:CLSZ2736745
Uniprot:Q54TY2
Length = 1655
Score = 218 (81.8 bits), Expect = 2.9e-20, Sum P(4) = 2.9e-20
Identities = 57/161 (35%), Positives = 87/161 (54%)
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRH--RFNWREGQEVLYMDG 473
++ A +K ++ L +KVL+F Q + L ++ + +R +FN+ L MDG
Sbjct: 1109 IERSAKLKVVETILPLWFKQGDKVLLFCQTRQMLDIVEQYIRDSTQFNY------LRMDG 1162
Query: 474 KQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAI 532
+++RQ + N DPS I L +TK G+NL GA+RV+L D WNP + QA
Sbjct: 1163 TTSIRQRQCLVEQFNIDPS--LFIFLLTTKVGGLGLNLTGANRVILFDPDWNPSTDMQAR 1220
Query: 533 SRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
R YR+GQK+ V +Y LIT T+E RQ K + +N +
Sbjct: 1221 ERVYRIGQKKAVTIYRLITLGTIEEKIYHRQIYKQFLTNKI 1261
Score = 95 (38.5 bits), Expect = 2.9e-20, Sum P(4) = 2.9e-20
Identities = 42/140 (30%), Positives = 63/140 (45%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTV 296
+ DEGH RN D + + +++T R+ILSG+P QN EL + V F L T+
Sbjct: 927 ILDEGHKIRNPDAEITLSCKQLQTPHRVILSGSPIQNKLTELWSLFDFV---FPGRLGTL 983
Query: 297 RKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIA------PFVNVH-KGTVLQES 349
I K++ SL S+G AN +A P++ K VL+ S
Sbjct: 984 -----PIFKSQF-SLPISVGGFANASPIQVQAAYKCAVALRDLISPYMLRRVKSDVLK-S 1036
Query: 350 LPGLRHSVVILQPDEFQKRL 369
LP V++ FQ++L
Sbjct: 1037 LPSKNEQVLMCPLTPFQEKL 1056
Score = 71 (30.1 bits), Expect = 2.9e-20, Sum P(4) = 2.9e-20
Identities = 27/95 (28%), Positives = 43/95 (45%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P D+ K +F +Q +++ EL + TGG I+ G GKT +
Sbjct: 787 IPFDIYKNLFEYQVTCVRWLY----------EL-HCQETGG----IVGDEMGLGKTVQIV 831
Query: 122 VFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKW 155
FL + P +I+AP ++L W +EF KW
Sbjct: 832 SFLASLHYSRRLGGPALIVAPATLLSNWIKEFHKW 866
Score = 41 (19.5 bits), Expect = 6.3e-12, Sum P(3) = 6.3e-12
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 273 NNFQELENTLSLVRQEFGEVL--------RTVRKSGREISKAKHASLISSI 315
N EL+ L +R + E R + + ++I K ASLIS I
Sbjct: 211 NEINELDIKLKKIRNDISEAEQFLFKNNEREINEKNKDIDKDTLASLISLI 261
Score = 39 (18.8 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDD 324
NN +E E + +E + + S + SK K S S + N+ DD
Sbjct: 470 NNEEENEEDEIDIEKEENDESPPPKSSKKSNSKLKKISTPKSKSKPKNNNDD 521
Score = 38 (18.4 bits), Expect = 2.9e-20, Sum P(4) = 2.9e-20
Identities = 10/45 (22%), Positives = 24/45 (53%)
Query: 581 GNDQTTASEPLEDKILEEMAQLYNNPSETLINA---IIPQPKETE 622
G++ E + DK + + NN + +++N+ +IP+ K+ +
Sbjct: 1297 GSNSEILPEHMNDKNDKNSIKNKNNNNNSILNSSSPLIPKKKKDD 1341
>UNIPROTKB|F2Z2R5 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 EMBL:AL035406 HGNC:HGNC:16816
ChiTaRS:CHD5 IPI:IPI00444866 ProteinModelPortal:F2Z2R5 SMR:F2Z2R5
Ensembl:ENST00000496404 ArrayExpress:F2Z2R5 Bgee:F2Z2R5
Uniprot:F2Z2R5
Length = 1225
Score = 179 (68.1 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 63/207 (30%), Positives = 98/207 (47%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID--I 159
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W D +
Sbjct: 718 GTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYV 777
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
Y +K S N + DN R KV R K K +L SY +L
Sbjct: 778 VTYTGDKESRSVIREN-EFSFEDNAIRSGKKV--FRMKKEVQIKFH--VLLTSY----EL 828
Query: 220 VSGDELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
++ D+ IL + V DE H +N+ + F+ L+ K +++L+GTP QNN +EL
Sbjct: 829 ITIDQ--AILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEEL 886
Query: 279 ENTLSLVRQEFGEVLRTVRKSGREISK 305
+ L+ + E L + +ISK
Sbjct: 887 FHLLNFLTPERFNNLEGFLEEFADISK 913
Score = 151 (58.2 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 40/105 (38%), Positives = 58/105 (55%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +Q
Sbjct: 1042 RVLIFSQMTKMLDLLEDFLEY-----EGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCF 1096
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKR 542
L ST+A GINL A V++ D WNP + QA SRA+R+GQ +
Sbjct: 1097 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQTK 1141
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 207 (77.9 bits), Expect = 3.1e-20, Sum P(3) = 3.1e-20
Identities = 49/142 (34%), Positives = 80/142 (56%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ ++ +++ L +R+ E +DG ++R +I+ N P+S+ +
Sbjct: 508 RVLIFSQ----MSRLLDILEDYCYFRDF-EYCRIDGSTSHEERIEAIDEYNKPNSEKFVF 562
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L +T+A GINLV A V+L D WNP + QA+ RA+R+GQK+ VHVY +T +E
Sbjct: 563 LLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTENAIEE 622
Query: 558 DKLRRQARKVWWSNMVFPSSDG 579
+ R A+K+ +V G
Sbjct: 623 KVIERAAQKLRLDQLVIQQGTG 644
Score = 90 (36.7 bits), Expect = 3.1e-20, Sum P(3) = 3.1e-20
Identities = 17/56 (30%), Positives = 33/56 (58%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGE 291
V DE H +N+ + + + + ++ R++++GTP QNN EL L+ + + FG+
Sbjct: 310 VIDEAHRIKNEQSALSQIIRLFYSKNRLLITGTPLQNNLHELWALLNFLLPDIFGD 365
Score = 76 (31.8 bits), Expect = 3.1e-20, Sum P(3) = 3.1e-20
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCR-P-VIIAPRSMLLTWEEEFKKW 155
I++ G GKT T+ FL Y++ + P +II P+S L W EF KW
Sbjct: 206 ILADEMGLGKTLQTISFL-GYLRYVKQIEGPFLIIVPKSTLDNWRREFLKW 255
Score = 39 (18.8 bits), Expect = 5.2e-15, Sum P(3) = 5.2e-15
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 283 SLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANH 321
SL+ ++ V V K RE K + +++ + +C NH
Sbjct: 431 SLLEKDIDAVNGAVGK--RE-GKTRLLNIVMQLRKCCNH 466
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 199 (75.1 bits), Expect = 4.0e-20, Sum P(4) = 4.0e-20
Identities = 58/198 (29%), Positives = 94/198 (47%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ+ L L+ + F W E +DG + R ++I N P S+ I
Sbjct: 453 RVLIFSQFSRMLDLLED-----FCWWRHYEYCRLDGSTPHEDRSNAIEAYNAPDSKKFIF 507
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
+ +T+A GINL A V++ D WNP + QA+ RA+R+GQK+ V V+ LIT T++
Sbjct: 508 MLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVRVFRLITENTVDE 567
Query: 558 DKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSETL----INA 613
+ + K+ N+V +T + I Q++ T+ I+
Sbjct: 568 RIIEKAEAKLRLDNIVIQQGRMSEAQKTLGKGDMISMIRHGAEQVFAAKDSTISDDDIDT 627
Query: 614 IIPQP--KETELIETFGE 629
I+ + K EL E G+
Sbjct: 628 ILEKAEVKTAELNEKMGK 645
Score = 89 (36.4 bits), Expect = 4.0e-20, Sum P(4) = 4.0e-20
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHP-RCRP-VIIAPRSMLLTWEEEFKKW 155
NG I++ G GKT L + + YMK + + P ++I P+S L W EFKKW
Sbjct: 152 NG-ILADEMGLGKT-LQTISMIGYMKHYKNKASPHLVIVPKSTLQNWANEFKKW 203
Score = 85 (35.0 bits), Expect = 4.0e-20, Sum P(4) = 4.0e-20
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
+ DE H +N+ + + + + + + R++++GTP QNN EL
Sbjct: 258 IIDEAHRIKNEKSKLSETVRELNSENRLLITGTPLQNNLHEL 299
Score = 39 (18.8 bits), Expect = 4.0e-20, Sum P(4) = 4.0e-20
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 302 EISKAKHASLISSIGRCANH 321
++ KA+ +++ + +C NH
Sbjct: 392 KVEKARLMNILMHLRKCVNH 411
>WB|WBGene00010845 [details] [associations]
symbol:M03C11.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0003677 GO:GO:0006281 GO:GO:0016568 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 EMBL:Z49128 EMBL:AL021171 PIR:T23046
RefSeq:NP_499301.2 ProteinModelPortal:G5EDG2 SMR:G5EDG2
EnsemblMetazoa:M03C11.8 GeneID:176462 KEGG:cel:CELE_M03C11.8
WormBase:M03C11.8 OMA:KEERYMA NextBio:892680 Uniprot:G5EDG2
Length = 989
Score = 191 (72.3 bits), Expect = 4.0e-20, Sum P(3) = 4.0e-20
Identities = 71/248 (28%), Positives = 113/248 (45%)
Query: 351 PGLRHSVVILQP-DEFQKRLCKAVEGVKSFVELNYCXXXXXXXXXXXXQQFFESFDVDSA 409
P LR S Q D+ K LC E + + + Q E F S
Sbjct: 683 PLLRRSEYTDQKLDKIAKMLCLR-EKAYADKKWQHVSEDLAWLSDIKIHQLCERFRCTSK 741
Query: 410 KLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEV 468
L +L ++G + ++L E+ +KVL+FSQ+ L ++ L R G
Sbjct: 742 FLLNEQLALKSGKCEQLDVMLPEIQKKGDKVLIFSQFTSMLDILEVYLNIR-----GYSY 796
Query: 469 LYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVE 528
+DG+ V RQ IN N S + L ST+A GINL A+ +++ D+ +NP+ +
Sbjct: 797 KRLDGQTPVLDRQEMINEFN-LSKDLFVFLLSTRAGGLGINLTSANHIIIHDIDFNPYND 855
Query: 529 RQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDG--GGNDQTT 586
+QA R +R+GQ++ VHV L++ T+E L +K+ V +DG G D+
Sbjct: 856 KQAEDRCHRMGQEKPVHVTRLVSKGTVEVGMLALAKKKLQLEKQV---TDGVKGQLDEDA 912
Query: 587 ASEPLEDK 594
E E++
Sbjct: 913 LRELKEEE 920
Score = 109 (43.4 bits), Expect = 4.0e-20, Sum P(3) = 4.0e-20
Identities = 19/49 (38%), Positives = 34/49 (69%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
++DEGH +N D+ ++ L ++K +++I+L+GTP QNN EL + + V
Sbjct: 523 IYDEGHMLKNCDSERYRGLMKVKGKKKILLTGTPLQNNLIELISLMYFV 571
Score = 71 (30.1 bits), Expect = 4.0e-20, Sum P(3) = 4.0e-20
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKW 155
I+ G GKT + FL +Y+K + P +I+ P S + W EF KW
Sbjct: 416 ILGDEMGLGKTIQIVAFL-SYLKQIGKTGPHLIVVPSSTIENWIGEFHKW 464
>POMBASE|SPAC3G6.01 [details] [associations]
symbol:hrp3 "ATP-dependent DNA helicase Hrp3"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0000790 "nuclear
chromatin" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IMP]
[GO:0031934 "mating-type region heterochromatin" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEP] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] [GO:0030702 "chromatin silencing
at centromere" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
PomBase:SPAC3G6.01 Pfam:PF00385 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0006338 GO:GO:0030466 GO:GO:0000790 GO:GO:0000070
GO:GO:0004003 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
OrthoDB:EOG4TF3TB GO:GO:0060303 PIR:T38720 RefSeq:NP_594967.1
ProteinModelPortal:O14139 MINT:MINT-4670837 STRING:O14139
EnsemblFungi:SPAC3G6.01.1 GeneID:2543064 KEGG:spo:SPAC3G6.01
OMA:HINGSST NextBio:20804092 Uniprot:O14139
Length = 1388
Score = 208 (78.3 bits), Expect = 4.0e-20, Sum P(4) = 4.0e-20
Identities = 50/130 (38%), Positives = 76/130 (58%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ + L ++ + L R G +DG R++SI+ N P+S +
Sbjct: 708 RVLIFSQMVRMLDILGDYLSLR-----GYPHQRLDGTVPAAVRRTSIDHFNAPNSPDFVF 762
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L ST+A GINL+ A V++ D WNP + QA++RA+R+GQK V VY L++ +T+E
Sbjct: 763 LLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLLSKDTIEE 822
Query: 558 DKLRRQARKV 567
D L R RK+
Sbjct: 823 DVLERARRKM 832
Score = 105 (42.0 bits), Expect = 4.0e-20, Sum P(4) = 4.0e-20
Identities = 17/40 (42%), Positives = 29/40 (72%)
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
DE H +N ++ +++ALS+ K R++++GTP QNN +EL
Sbjct: 508 DEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIREL 547
Score = 65 (27.9 bits), Expect = 4.0e-20, Sum P(4) = 4.0e-20
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR-P-VIIAPRSMLLTWEEEFKKWGIDI 159
NG I++ G GKT T+ FL +Y+ R P +++ P S + W+E W D+
Sbjct: 395 NG-ILADEMGLGKTVQTVAFL-SYLAHSLRQHGPFLVVVPLSTVPAWQETLALWASDM 450
Score = 40 (19.1 bits), Expect = 4.0e-20, Sum P(4) = 4.0e-20
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 5 KDIDPPFATSPSRRAEWREYNNVDPSFLDDLNSRDS 40
+DI+ +R + EY VD LNS S
Sbjct: 268 EDIEAMDIEKERKRENYEEYKQVDRIVAKHLNSDGS 303
Score = 39 (18.8 bits), Expect = 1.8e-13, Sum P(4) = 1.8e-13
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 321 HRDDXXXXXXXXXIAPFVNVHK----GTVLQESLPGLRHSVVILQPDEFQKR 368
HR ++ F N ++ GT LQ ++ L V L P +F+ R
Sbjct: 511 HRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIR 562
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 180 (68.4 bits), Expect = 4.6e-20, Sum P(4) = 4.6e-20
Identities = 48/165 (29%), Positives = 84/165 (50%)
Query: 416 LDPEAGIKTRFLLILLEL-STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGK 474
L + G + +L EL S + L+F+Q + L I+EQ + +R + +DG
Sbjct: 1361 LQYDCGKLQKLATLLQELTSQGHRALIFTQMTKVLD-ILEQFLNIHGYR----YMRLDGA 1415
Query: 475 QDVKKRQSSINVLN-DPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAIS 533
++ RQ N DP + + + ST++ GINL GA V+ D WNP +++Q
Sbjct: 1416 TKIEDRQLLTEKFNRDP--KIPVFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQD 1473
Query: 534 RAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
R +R+GQ R VH+Y ++ T+E + +++ +K N+V +
Sbjct: 1474 RCHRIGQVRDVHIYRFVSEYTIESNIIKKANQKRQLDNVVIQEGE 1518
Score = 96 (38.9 bits), Expect = 4.6e-20, Sum P(4) = 4.6e-20
Identities = 36/119 (30%), Positives = 57/119 (47%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P +R + P+Q++G W L L N+ + G I++ G GKT T+
Sbjct: 815 IPSLLRGTLRPYQKQGLN--W--------LASLYNNNTNG-----ILADEMGLGKTIQTI 859
Query: 122 VFLQAYMKL-HPRCRP-VIIAPRSMLLTWEEEFKKW--GIDIPFYNLNKPELSGKENNG 176
L AY+ H + P +II P S++L WE EFKK+ G + Y P+ ++ G
Sbjct: 860 SLL-AYLACEHHKWGPHLIIVPTSVMLNWEMEFKKFAPGFKVLTY-YGSPQQRAQKRKG 916
Score = 94 (38.1 bits), Expect = 4.6e-20, Sum P(4) = 4.6e-20
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
+ DE H +N + ++AL T R++L+GTP QNN EL + L
Sbjct: 949 ILDEAHNIKNFRSTRWRALLNFNTENRLLLTGTPLQNNLMELWSLL 994
Score = 53 (23.7 bits), Expect = 4.6e-20, Sum P(4) = 4.6e-20
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 5 KDIDPPFATSPSRRAEWREYNNVD 28
K + PP T PS +WR N D
Sbjct: 262 KTVPPPLVTHPSHIPQWRPENLED 285
>TAIR|locus:2040184 [details] [associations]
symbol:PKL "PICKLE" species:3702 "Arabidopsis thaliana"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0016568
"chromatin modification" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=IMP] [GO:0009733 "response to
auxin stimulus" evidence=IMP] [GO:2000023 "regulation of lateral
root development" evidence=IMP] [GO:0009788 "negative regulation of
abscisic acid mediated signaling pathway" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0009739 "response to gibberellin
stimulus" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0008270
GO:GO:0016568 GO:GO:0048364 GO:GO:0009739 GO:GO:0009788
GO:GO:0009736 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOGENOM:HOG000231124 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF185578 EMBL:AF185577 EMBL:AK229409 IPI:IPI00521160
PIR:T52301 RefSeq:NP_565587.1 UniGene:At.11745
ProteinModelPortal:Q9S775 SMR:Q9S775 STRING:Q9S775 PaxDb:Q9S775
PRIDE:Q9S775 EnsemblPlants:AT2G25170.1 GeneID:817055
KEGG:ath:AT2G25170 TAIR:At2g25170 InParanoid:Q9S775 OMA:NVVMYFG
PhylomeDB:Q9S775 ProtClustDB:CLSN2688404 Genevestigator:Q9S775
GermOnline:AT2G25170 GO:GO:2000023 Uniprot:Q9S775
Length = 1384
Score = 181 (68.8 bits), Expect = 6.3e-20, Sum P(2) = 6.3e-20
Identities = 52/166 (31%), Positives = 84/166 (50%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+++Q+ L L+ + H+ W+ + +DGK +RQ I+ N +S
Sbjct: 613 RVLIYTQFQHMLDLLEDYCTHK-KWQYER----IDGKVGGAERQIRIDRFNAKNSNKFCF 667
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L ST+A GINL A V++ D WNP + QA++RA+RLGQ V +Y LI T+E
Sbjct: 668 LLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINRGTIEE 727
Query: 558 DKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLY 603
++ +K+ ++V G Q E L+D I +L+
Sbjct: 728 RMMQLTKKKMVLEHLVV----GKLKTQNINQEELDDIIRYGSKELF 769
Score = 147 (56.8 bits), Expect = 6.3e-20, Sum P(2) = 6.3e-20
Identities = 54/211 (25%), Positives = 101/211 (47%)
Query: 107 IISHAPGTGKTGLTLVFLQAYMK--LHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPF 161
I++ G GKT ++ L + + L P ++IAP S L WE EF W + +
Sbjct: 295 ILADEMGLGKTIQSIALLASLFEENLIPH---LVIAPLSTLRNWEREFATWAPQMNVVMY 351
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
+ + +E+ ++ D +K + K G I ++ +L SY ++++
Sbjct: 352 FGTAQARAVIREHEFYLS-KDQKKIKKKKSGQISSESKQK-RIKFDVLLTSY----EMIN 405
Query: 222 GDELSGILLDLPG-LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELEN 280
D S +L + + DEGH +N D+ +F +L++ + RI+L+GTP QNN EL
Sbjct: 406 LD--SAVLKPIKWECMIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELFM 463
Query: 281 TLSLVRQ-EFGEVLRTVRKSGREISKAKHAS 310
+ + +FG L ++ ++I++ + S
Sbjct: 464 LMHFLDAGKFGS-LEEFQEEFKDINQEEQIS 493
Score = 38 (18.4 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 496 IMLASTKACCEGINLVGASRVV 517
IM+ K CC L G V+
Sbjct: 559 IMMELRKVCCHPYMLEGVEPVI 580
>ZFIN|ZDB-GENE-060531-56 [details] [associations]
symbol:ercc6l "excision repair cross-complementing
rodent repair deficiency, complementation group 6-like"
species:7955 "Danio rerio" [GO:0016539 "intein-mediated protein
splicing" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000776 "kinetochore" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0000777
"condensed chromosome kinetochore" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR006141 InterPro:IPR011990
InterPro:IPR019734 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060531-56 GO:GO:0005524 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
GO:GO:0016539 CTD:54821 GeneTree:ENSGT00590000083118
OrthoDB:EOG4FR0RD EMBL:CR391924 EMBL:BX510925 EMBL:BC150168
IPI:IPI00635423 RefSeq:NP_001093563.1 UniGene:Dr.38615
ProteinModelPortal:A2BGR3 Ensembl:ENSDART00000015401
GeneID:100005291 KEGG:dre:100005291 InParanoid:A2BGR3
NextBio:20786618 Bgee:A2BGR3 Uniprot:A2BGR3
Length = 1451
Score = 199 (75.1 bits), Expect = 7.4e-20, Sum P(4) = 7.4e-20
Identities = 56/151 (37%), Positives = 85/151 (56%)
Query: 419 EAGIKTRFLLILLELSTNE--KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGK-Q 475
E+G K +F++ L+E E + L+FSQ + L ++ LR+R N+R +L +DG
Sbjct: 473 ESG-KLQFVVSLMECLREEGHRTLIFSQSRKMLDIMERVLRNR-NFR----LLRLDGTVT 526
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
+ +R+ I++ + I L +T+ GI L GA+RVV+ D WNP + QA+ RA
Sbjct: 527 QLAEREKRISLFQT-DKRYTIFLLTTQVGGVGITLTGANRVVIFDPSWNPATDAQAVDRA 585
Query: 536 YRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
YR+GQ V +Y LIT T+E RRQ K
Sbjct: 586 YRIGQTENVIIYRLITCGTVEEKIYRRQVFK 616
Score = 89 (36.4 bits), Expect = 7.4e-20, Sum P(4) = 7.4e-20
Identities = 33/140 (23%), Positives = 59/140 (42%)
Query: 32 LDDLNSRDSGFDSQTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDL 91
+ DL R+ D + + F + + +L + + K++ HQ+EG F++
Sbjct: 69 IQDLIQREDEEDEEEE-EEFVNVNNSGLKLY-KGLYDKLYDHQKEGVAFLY--------- 117
Query: 92 DELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEE 151
S G G I++ G GKT + FL +++ P S++ W E
Sbjct: 118 -----SLYRDGRKGGILADDMGLGKTIQVISFLSGMYDAELANHTLLVMPTSLIKNWVRE 172
Query: 152 FKKW--GIDIP-FYNLNKPE 168
F KW G+ + F+ +K E
Sbjct: 173 FAKWTPGMRVKEFHGSSKTE 192
Score = 84 (34.6 bits), Expect = 7.4e-20, Sum P(4) = 7.4e-20
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
+ DE H + T K+ I + R++L+GTP QNN +E+
Sbjct: 235 ILDEAHKIKTSSTKTAKSAHAIPAKNRVLLTGTPVQNNLREM 276
Score = 45 (20.9 bits), Expect = 7.4e-20, Sum P(4) = 7.4e-20
Identities = 17/71 (23%), Positives = 34/71 (47%)
Query: 564 ARKVWWSNMVFPSSDGGGNDQTT----ASEPLEDKILEEMAQLYNNPSETLINAIIPQPK 619
+R+ + +++ SD N+ T ASE D+++EE+ + S++ +
Sbjct: 1174 SRRSFVVSLLENESDEESNEDKTKSSGASETCADELVEEVQTSSGDNSKSYETSEANGTL 1233
Query: 620 ETELIETFGEF 630
EL+E GE+
Sbjct: 1234 ADELVEEEGEY 1244
>SGD|S000000017 [details] [associations]
symbol:FUN30 "Snf2p family member with ATP-dependent
chromatin remodeling activity" species:4932 "Saccharomyces
cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0070870
"heterochromatin maintenance involved in chromatin silencing"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=IMP] [GO:0031934 "mating-type region
heterochromatin" evidence=IPI] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IMP] [GO:0006348 "chromatin silencing
at telomere" evidence=IMP] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0070869 "heterochromatin assembly
involved in chromatin silencing" evidence=IMP] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
SGD:S000000017 GO:GO:0005739 GO:GO:0005524 GO:GO:0005634
GO:GO:0000775 EMBL:L05146 EMBL:BK006935 GO:GO:0003677 GO:GO:0003682
GO:GO:0030466 GO:GO:0000183 GO:GO:0006348 GO:GO:0004386
GO:GO:0031934 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0070869 GO:GO:0000729
GO:GO:0008094 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
PIR:S22266 RefSeq:NP_009383.1 ProteinModelPortal:P31380 SMR:P31380
DIP:DIP-2541N IntAct:P31380 MINT:MINT-425278 STRING:P31380
PaxDb:P31380 PeptideAtlas:P31380 EnsemblFungi:YAL019W GeneID:851214
KEGG:sce:YAL019W CYGD:YAL019w GeneTree:ENSGT00630000089890
OMA:KIEPYYG NextBio:968097 Genevestigator:P31380 GermOnline:YAL019W
GO:GO:0070870 Uniprot:P31380
Length = 1131
Score = 188 (71.2 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 58/175 (33%), Positives = 96/175 (54%)
Query: 427 LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINV 486
LL + + EKVL+FS + + L I+E + +++ L +DG V RQ I+
Sbjct: 957 LLKTIIVDKQEKVLIFSLFTQVLD-ILEMVLSTLDYK----FLRLDGSTQVNDRQLLIDK 1011
Query: 487 LNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHV 546
+ I + STKA GINLV A+ V++ D +NP +RQA RA+R+GQ + V++
Sbjct: 1012 FYE-DKDIPIFILSTKAGGFGINLVCANNVIIFDQSFNPHDDRQAADRAHRVGQTKEVNI 1070
Query: 547 YHLITSETLEWDKLRRQAR-KVWWSNMVFPSSDGGGND--QTTASEPLEDKILEE 598
LIT +++E +K+ + A+ K+ + + S D D ++ S+ LED I +E
Sbjct: 1071 TTLITKDSIE-EKIHQLAKNKLALDSYI--SEDKKSQDVLESKVSDMLEDIIYDE 1122
Score = 107 (42.7 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
V+DEGH +N + F L +I+ R++L+GTP QNN +EL + L +
Sbjct: 701 VYDEGHMLKNSTSERFAKLMKIRANFRLLLTGTPLQNNLKELMSLLEFI 749
Score = 74 (31.1 bits), Expect = 1.1e-19, Sum P(3) = 1.1e-19
Identities = 32/104 (30%), Positives = 47/104 (45%)
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWG--IDI-PF 161
CI++ G GKT + F AY+K P +++ P S L W EF+K+ + I P+
Sbjct: 593 CILADDMGLGKTCQVISFF-AYLKQINEPGPHLVVVPSSTLENWLREFQKFAPALKIEPY 651
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMG 205
Y L +E L D +R GK +I V Y+ G
Sbjct: 652 YG----SLQEREE-----LRDILERNAGKYDVI--VTTYNLAAG 684
>CGD|CAL0001390 [details] [associations]
symbol:orf19.3035 species:5476 "Candida albicans" [GO:0000124
"SAGA complex" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0030874 "nucleolar chromatin" evidence=IEA] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IEA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IEA] [GO:0071441 "negative regulation of histone H3-K14
acetylation" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IEA] [GO:0060303 "regulation
of nucleosome density" evidence=IEA] [GO:0006200 "ATP catabolic
process" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:2000104 "negative regulation of
DNA-dependent DNA replication" evidence=IEA] [GO:0042766
"nucleosome mobilization" evidence=IEA] [GO:0001178 "regulation of
transcriptional start site selection at RNA polymerase II promoter"
evidence=IEA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IEA] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IEA] [GO:0000182 "rDNA
binding" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 CGD:CAL0001390
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907 KO:K11367
RefSeq:XP_721262.1 RefSeq:XP_721533.1 ProteinModelPortal:Q5AI17
STRING:Q5AI17 GeneID:3636889 GeneID:3637077 KEGG:cal:CaO19.10553
KEGG:cal:CaO19.3035 Uniprot:Q5AI17
Length = 1410
Score = 193 (73.0 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 45/129 (34%), Positives = 77/129 (59%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ + L ++ + + + +G + +DG KR+ +I+ N P S+
Sbjct: 692 RVLIFSQMVRMLDILGDYM-----FIKGYQFQRLDGTVPSSKRKIAIDHFNAPGSKDFAF 746
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L ST+A GINL+ A V++ D WNP + QA++RA+R+GQK V VY ++ +T+E
Sbjct: 747 LLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVSVYRFVSKDTVE- 805
Query: 558 DKLRRQARK 566
+++ +ARK
Sbjct: 806 EQILERARK 814
Score = 95 (38.5 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
DE H +N ++ +++AL K R++++GTP QNN +EL
Sbjct: 494 DEAHRLKNAESSLYEALKGFKVSNRLLITGTPLQNNVKEL 533
Score = 83 (34.3 bits), Expect = 1.5e-19, Sum P(3) = 1.5e-19
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDI 159
NG I++ G GKT T+ FL + + P +++ P S + W+E F+KW D+
Sbjct: 382 NG-ILADEMGLGKTVQTVAFLSWLIYARRQNGPHLVVVPLSTVPAWQETFEKWAPDV 437
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 201 (75.8 bits), Expect = 1.6e-19, Sum P(3) = 1.6e-19
Identities = 55/190 (28%), Positives = 98/190 (51%)
Query: 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+ +VL+F Q +T IM+ + W++ + L +DG ++RQ + V N P S
Sbjct: 835 SGHRVLMFFQ----MTQIMDIMEDFLRWKD-MKYLRLDGSTKAEERQDMLKVFNAPDSDY 889
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A G+NL A V++ D WNP + QA RA+R+GQK V + LIT+++
Sbjct: 890 FCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITNDS 949
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSETLINAI 614
+E L R +K+ V + G ++++TA E ++ L+ + + N ++ N
Sbjct: 950 VEEVILERAHQKLDIDGKVIQA--GKFDNKSTAEE--QEAFLKRLLEADANGADNEENDS 1005
Query: 615 IPQPKETELI 624
+ + E++
Sbjct: 1006 LDDDELNEIL 1015
Score = 97 (39.2 bits), Expect = 1.6e-19, Sum P(3) = 1.6e-19
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 237 VFDEGHTPRNDDTCMFKAL-SRIKTRRRIILSGTPFQNNFQELENTLSLV 285
+ DEGH +N + + + L + KT+ R+IL+GTP QNN EL L+ V
Sbjct: 625 IIDEGHRMKNAQSKLSQTLRTYYKTKNRLILTGTPLQNNLPELWALLNFV 674
Score = 71 (30.1 bits), Expect = 1.6e-19, Sum P(3) = 1.6e-19
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYM--KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDI 159
NG I++ G GKT + + L Y+ K H + +II P S + W EF+KW I
Sbjct: 521 NG-ILADEMGLGKT-IQSISLVTYLIEKKHEN-KFLIIVPLSTITNWTLEFEKWAPSI 575
Score = 39 (18.8 bits), Expect = 2.9e-16, Sum P(3) = 2.9e-16
Identities = 12/27 (44%), Positives = 13/27 (48%)
Query: 210 GLSYRLFEKLVSGDELSGILLDLPGLF 236
G LFEK V+G L DLP F
Sbjct: 128 GFDNELFEKQVAGLLLLSRDYDLPEKF 154
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 183 (69.5 bits), Expect = 1.7e-19, Sum P(3) = 1.7e-19
Identities = 53/159 (33%), Positives = 81/159 (50%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ L I+E H WR +DG+ + R I N +S +
Sbjct: 449 RVLIFSQMTRMLD-ILEDYCH---WRN-YNYCRLDGQTPHEDRNRQIQEFNMDNSAKFLF 503
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
+ ST+A GINL A V++ D WNP ++ QA+ RA+R+GQK+ V V+ LIT T+E
Sbjct: 504 MLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITESTVEE 563
Query: 558 DKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKIL 596
+ R K+ MV GG +++ +D++L
Sbjct: 564 KIVERAEVKLRLDKMVI---QGGRLVDNRSNQLNKDEML 599
Score = 94 (38.1 bits), Expect = 1.7e-19, Sum P(3) = 1.7e-19
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
V DE H +N+ + + + L KT R++++GTP QNN EL
Sbjct: 254 VIDEAHRIKNEKSKLSEILREFKTANRLLITGTPLQNNLHEL 295
Score = 89 (36.4 bits), Expect = 1.7e-19, Sum P(3) = 1.7e-19
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMK-LHPRCRP-VIIAPRSMLLTWEEEFKKW 155
G NG I++ G GKT L + L Y+K + P ++I P+S L W EFKKW
Sbjct: 146 GING-ILADEMGLGKT-LQTISLLGYLKHFKNQAGPHIVIVPKSTLQNWVNEFKKW 199
Score = 46 (21.3 bits), Expect = 7.2e-05, Sum P(4) = 7.2e-05
Identities = 37/192 (19%), Positives = 74/192 (38%)
Query: 296 VRKSGREISKAKHASLISSIGRCANHR---DDXXXXXXXXXIAPFV-NVHKGTVLQESLP 351
V +G+ + K + +++ + +C NH D V N K +L + LP
Sbjct: 383 VNGAGK-VEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTHLVYNSGKMAILDKLLP 441
Query: 352 GLRH--SVVILQPDEFQKRLCKAVEGVKSFVELNYCXXXXXXXXXXXXQQFFESFDVDSA 409
L+ S V++ R+ +E + NYC +Q E F++D++
Sbjct: 442 KLQEQGSRVLIFSQ--MTRMLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQE-FNMDNS 498
Query: 410 KLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEP-LTLIMEQLRHRFNWREGQEV 468
L AG + + L+T + V+++ P + L HR ++ V
Sbjct: 499 AKFLFMLSTRAGG------LGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRV 552
Query: 469 LYMDGKQDVKKR 480
+ + V+++
Sbjct: 553 FRLITESTVEEK 564
Score = 38 (18.4 bits), Expect = 7.2e-05, Sum P(4) = 7.2e-05
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKA 503
+WRE Q++ + + KR+ N D + + ++ KA
Sbjct: 671 DWREKQKLNALGNWIEPPKRERKANYAVDAYFREALRVSEPKA 713
>MGI|MGI:2654144 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent
repair deficiency complementation group 6 like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0000776 "kinetochore" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 MGI:MGI:2654144
GO:GO:0005524 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
CTD:54821 GeneTree:ENSGT00590000083118 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OrthoDB:EOG4FR0RD EMBL:AY172688 EMBL:AK029015
EMBL:AK045113 EMBL:AK084617 EMBL:AK084618 EMBL:AL807784
EMBL:BC037660 IPI:IPI00221889 RefSeq:NP_666347.2 UniGene:Mm.31911
ProteinModelPortal:Q8BHK9 SMR:Q8BHK9 IntAct:Q8BHK9 STRING:Q8BHK9
PhosphoSite:Q8BHK9 PaxDb:Q8BHK9 PRIDE:Q8BHK9
Ensembl:ENSMUST00000056904 GeneID:236930 KEGG:mmu:236930
UCSC:uc009tyk.2 InParanoid:Q8BHK9 NextBio:383173 Bgee:Q8BHK9
Genevestigator:Q8BHK9 Uniprot:Q8BHK9
Length = 1240
Score = 188 (71.2 bits), Expect = 1.8e-19, Sum P(4) = 1.8e-19
Identities = 55/151 (36%), Positives = 82/151 (54%)
Query: 419 EAGIKTRFLLILLELSTNE--KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGK-Q 475
E+G K FL+ LLE +E + LVFSQ I+ L +I L+++ + L +DG
Sbjct: 461 ESG-KMIFLMSLLERLQDEGHQTLVFSQSIKILNIIERLLKNKHF-----KTLRIDGTVT 514
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
+ +R+ I + + + + L +T+ G+ L A+RVV+ D WNP + QA+ R
Sbjct: 515 HLWEREKRIQLFQQ-NKEYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRV 573
Query: 536 YRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
YR+GQK V VY LIT T+E RRQ K
Sbjct: 574 YRIGQKENVVVYRLITCGTVEEKIYRRQVFK 604
Score = 98 (39.6 bits), Expect = 1.8e-19, Sum P(4) = 1.8e-19
Identities = 31/111 (27%), Positives = 51/111 (45%)
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
L+ R++ +K+F HQ+EG F++ S G G I++ G GKT
Sbjct: 88 LLYRELYEKLFEHQKEGIAFLY--------------SLYKDGRKGGILADDMGLGKTVQI 133
Query: 121 LVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW--GIDIP-FYNLNKPE 168
+ FL ++I P +++ TW EF KW G+ + F+ +K E
Sbjct: 134 IAFLSGMFDASLVNHVLLIMPTNLINTWVNEFAKWTPGMRVKTFHGSSKSE 184
Score = 82 (33.9 bits), Expect = 1.8e-19, Sum P(4) = 1.8e-19
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTV 296
+ DE H ++ T I R++L+GTP QNN QEL + Q G +L T+
Sbjct: 227 ILDEAHKIKSASTKSAVCARAIPASNRLLLTGTPVQNNLQELWSLFDFACQ--GSLLGTL 284
Query: 297 R 297
+
Sbjct: 285 K 285
Score = 46 (21.3 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 19/85 (22%), Positives = 34/85 (40%)
Query: 541 KRVVHVYHLITSETLEWDKLRRQA---RKVWWSNMVFPSSDGGGNDQTTASEPLEDKILE 597
+RV L+ SE+ + ++RQ + W FPS + +P ++L
Sbjct: 702 QRVQKAQFLVESESQ--NTVQRQTTGIEETWLKAQEFPSQQKKKGTEFNKPQPQPSRLLT 759
Query: 598 EMAQLYNNPSETLINAIIPQPKETE 622
+ Q+ S+ I Q E+E
Sbjct: 760 KPTQVEAISSQMASITICDQSAESE 784
Score = 43 (20.2 bits), Expect = 1.8e-19, Sum P(4) = 1.8e-19
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 583 DQTTASEPLEDKILEEMAQL-----YNNPSETLINAIIPQPKET 621
DQ+ SEP E + ++ L +N+ S+ A +PQ E+
Sbjct: 778 DQSAESEPQEHSEVHDVTSLQGSHHFNSTSDAGTIASLPQGAES 821
>UNIPROTKB|E1BYA8 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000303 "response to superoxide" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006290 "pyrimidine dimer
repair" evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA] [GO:0009636 "response to
toxic substance" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:AADN02027759 EMBL:AADN02027760 IPI:IPI00592927
Ensembl:ENSGALT00000010107 Uniprot:E1BYA8
Length = 1498
Score = 192 (72.6 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 52/136 (38%), Positives = 74/136 (54%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL F+Q + L ++ LR R N+ L MDG + RQ I N+ S I
Sbjct: 853 RVLFFTQSRQMLQILEVFLRDR-NY----SYLRMDGTTTIASRQPLITRYNEDKS-IFIF 906
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L +T+ G+NL GA RV++ D WNP + QA RA+R+GQK+ V VY L+T+ T+E
Sbjct: 907 LLTTRVGGIGVNLTGADRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEE 966
Query: 558 DKLRRQARKVWWSNMV 573
RQ K + +N V
Sbjct: 967 KIYHRQIFKQFLTNRV 982
Score = 104 (41.7 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
+ DEGH RN + + A + +T RIILSG+P QNN +EL + V
Sbjct: 639 ILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLKELWSLFDFV 687
Score = 75 (31.5 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 30/99 (30%), Positives = 46/99 (46%)
Query: 62 VPRDVRKKMFPHQREGFEFIWK---NIAGGIDLDELKNSTSTGGGNGC-IISHAPGTGKT 117
VP + KK+F +Q+ G ++W+ AGGI DE+ G G II+ G +
Sbjct: 494 VPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEM------GLGKTIQIIAFLAGLSYS 547
Query: 118 GL-TLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155
+ T Y L P VI+ P +++ W +EF W
Sbjct: 548 KIRTRGSNYRYQGLGPT---VIVCPATVMHQWVKEFHTW 583
>UNIPROTKB|J9P3F5 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 Gene3D:1.25.40.10
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
EMBL:AAEX03026496 RefSeq:XP_549075.2 Ensembl:ENSCAFT00000036577
GeneID:491955 KEGG:cfa:491955 Uniprot:J9P3F5
Length = 1268
Score = 181 (68.8 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 53/151 (35%), Positives = 81/151 (53%)
Query: 419 EAGIKTRFLLILLELSTNE--KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGK-Q 475
E+G K FL+ LL +E + LVFSQ + L +I L++R ++L +DG
Sbjct: 482 ESG-KMIFLIELLRRLRDEGHQTLVFSQSRQILNIIERLLKNRHF-----KILRVDGTVT 535
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
+ +R+ I++ + + L +T+ G+ L A+RVV+ D WNP + QA+ R
Sbjct: 536 HLVEREKRIHLFQQNKDYS-VFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRV 594
Query: 536 YRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
YR+GQK + VY LIT T+E RRQ K
Sbjct: 595 YRIGQKENIVVYRLITCGTVEEKIYRRQVFK 625
Score = 98 (39.6 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 34/128 (26%), Positives = 58/128 (45%)
Query: 44 SQTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGG 103
++ G D FT + L+ R++ ++F HQ+EG F++ S G
Sbjct: 93 AEHGDDEFTDVCNSGL-LLYRELHNQLFEHQKEGVAFLY--------------SLYRDGR 137
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW--GIDIP- 160
G I++ G GKT + FL ++I P +++ TW +EF KW G+ +
Sbjct: 138 KGGILADDMGLGKTVQIIAFLSGMFDATLVSHVLLIMPTNLISTWIKEFVKWTPGMRVKT 197
Query: 161 FYNLNKPE 168
F+ +K E
Sbjct: 198 FHGSSKDE 205
Score = 90 (36.7 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTV 296
+ DE H + T + R RI+L+GTP QNN QEL + Q G +L T+
Sbjct: 248 ILDEAHKIKTSSTKSAICARAVPARNRILLTGTPIQNNLQELWSLFDFACQ--GSLLGTL 305
Query: 297 R 297
+
Sbjct: 306 K 306
>UNIPROTKB|D3ZZZ1 [details] [associations]
symbol:Ercc6 "Protein Ercc6" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311509
GO:GO:0005524 GO:GO:0008630 GO:GO:0005730 GO:GO:0006284
GO:GO:0003677 GO:GO:0009636 GO:GO:0003682 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257
GO:GO:0006283 GO:GO:0008094 GO:GO:0008023 GO:GO:0032786
GO:GO:0006290 GO:GO:0007256 GO:GO:0000303 IPI:IPI00358023
Ensembl:ENSRNOT00000038493 ArrayExpress:D3ZZZ1 Uniprot:D3ZZZ1
Length = 1475
Score = 201 (75.8 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 51/138 (36%), Positives = 80/138 (57%)
Query: 437 EKVLVFSQYIEPLTLIMEQLR-HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
++VL+FSQ + L ++ LR H++++ L MDG + RQ I N+ +S
Sbjct: 850 QRVLLFSQSRQMLHILEVFLRAHKYSY------LKMDGTTTIASRQPLITKYNEDTS-IF 902
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
+ L +T+ G+NL GA+RV++ D WNP + QA RA+R+GQK+ V VY L+T+ T+
Sbjct: 903 VFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTI 962
Query: 556 EWDKLRRQARKVWWSNMV 573
E RQ K + +N V
Sbjct: 963 EEKIYHRQIFKQFLTNRV 980
Score = 103 (41.3 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
+ DEGH RN + + A + +T RIILSG+P QNN +EL
Sbjct: 638 ILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLREL 679
Score = 66 (28.3 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 28/99 (28%), Positives = 46/99 (46%)
Query: 62 VPRDVRKKMFPHQREGFEFIWK---NIAGGIDLDELKNSTSTGGGNGC-IISHAPGTGKT 117
VP + KK+F +Q+ G ++W+ AGGI DE+ G G II+ G +
Sbjct: 493 VPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEM------GLGKTIQIIAFLAGLSYS 546
Query: 118 GL-TLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155
+ T + L P +I+ P +++ W +EF W
Sbjct: 547 KIRTRGSNYRFEGLGPT---LIVCPTTVMHQWVKEFHTW 582
>UNIPROTKB|I3LFY4 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001440
InterPro:IPR001650 InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271
Pfam:PF00515 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
OMA:TKNGDLE EMBL:CU469343 Ensembl:ENSSSCT00000023457 Uniprot:I3LFY4
Length = 1225
Score = 186 (70.5 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 54/151 (35%), Positives = 82/151 (54%)
Query: 419 EAGIKTRFLLILLELSTNE--KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGK-Q 475
E+G K FL+ LL+ +E + LVFSQ + L ++ L++R ++L +DG
Sbjct: 438 ESG-KMTFLMDLLKRLRDEGHQTLVFSQSRQILNILERLLKNRHF-----KILRIDGTIT 491
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
+ +R+ I++ + + L +T+ G+ L ASRVV+ D WNP + QA+ R
Sbjct: 492 HLVEREKRISLFQQNKDYS-VFLLTTQVGGVGLTLTAASRVVIFDPSWNPATDAQAVDRV 550
Query: 536 YRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
YR+GQK V VY LIT T+E RRQ K
Sbjct: 551 YRIGQKENVVVYRLITCGTVEEKIYRRQVFK 581
Score = 91 (37.1 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTV 296
+ DE H + T I R RI+L+GTP QNN QEL + Q G +L T+
Sbjct: 204 ILDEAHKIKTSSTKSAICARAIPARNRILLTGTPIQNNLQELWSLFDFACQ--GSLLGTL 261
Query: 297 R 297
+
Sbjct: 262 K 262
Score = 91 (37.1 bits), Expect = 2.0e-19, Sum P(3) = 2.0e-19
Identities = 34/128 (26%), Positives = 57/128 (44%)
Query: 44 SQTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGG 103
++ G D FT + L+ R++ ++F +Q+EG F++ S G
Sbjct: 49 AEHGEDEFTDVCNSGL-LLYRELHNQLFEYQKEGVAFLY--------------SLYRDGR 93
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW--GIDIP- 160
G I++ G GKT + FL ++I P S++ TW EF KW G+ +
Sbjct: 94 RGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLIMPTSLISTWLREFVKWTPGMRVKT 153
Query: 161 FYNLNKPE 168
F+ +K E
Sbjct: 154 FHGPSKDE 161
Score = 50 (22.7 bits), Expect = 3.9e-05, Sum P(3) = 3.9e-05
Identities = 24/101 (23%), Positives = 41/101 (40%)
Query: 540 QKRVVHVYHLITSET----LEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKI 595
Q+RV L+ SE+ L ++ R + +W VFPS +P +
Sbjct: 678 QQRVQKAQFLVESESQNTELLMERQRTASEGIWLREPVFPSQTKKKCAGFNKPQPRPSPL 737
Query: 596 LEEMAQLYNNPSETLINAIIPQ-PKETELIETFGEFLNKSS 635
L + S + + II P+E+E + F +N +S
Sbjct: 738 LPTHHIQEEDISSQMASIIIDDLPEESEKQDLFRIKMNDTS 778
>ASPGD|ASPL0000056677 [details] [associations]
symbol:AN1024 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000172362 EnsemblFungi:CADANIAT00001623 OMA:NNITELW
Uniprot:C8VTY9
Length = 868
Score = 191 (72.3 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 50/139 (35%), Positives = 70/139 (50%)
Query: 428 LILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVL 487
LI L+ K+L+FSQ+ L ++ + H +W +DG RQ+ I
Sbjct: 634 LIPCLLNKGHKILIFSQFKTQLDILQDWATHLRSWN----CCRIDGAISQADRQAQIKAF 689
Query: 488 NDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVY 547
N +I L ST+A +GINLV A V+L D WNP + QA RA+R+GQ + V VY
Sbjct: 690 NTDKDY-KIFLLSTRAGGQGINLVAADTVILFDSDWNPQQDLQAQDRAHRIGQTKPVIVY 748
Query: 548 HLITSETLEWDKLRRQARK 566
L T T+E L + K
Sbjct: 749 RLATKGTVEQTLLEKADSK 767
Score = 89 (36.4 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE 288
+ DEGH +N + + K L + R++++GTP QNN EL + L + E
Sbjct: 332 IVDEGHRLKNMNCRLIKELLSYNSANRLLITGTPLQNNITELWSLLHFLLPE 383
Score = 81 (33.6 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 25/70 (35%), Positives = 36/70 (51%)
Query: 104 NG-C-IISHAPGTGKTGLTLVFLQAYMKLHPRCRPVII-APRSMLLTWEEEFKKW--GID 158
NG C I++ G GKT + + L A+ K H P +I AP S + W +EF +W GI
Sbjct: 219 NGLCGILADEMGLGKT-VQAISLIAFFKEHNVSGPFLISAPLSTVSNWVDEFARWTPGIK 277
Query: 159 IPFYNLNKPE 168
Y+ + E
Sbjct: 278 TVLYHGTRDE 287
Score = 38 (18.4 bits), Expect = 7.5e-14, Sum P(4) = 7.5e-14
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 277 ELENTLSLVRQEFGEVLRTVRKSGREISKAK 307
++E ++ QE E T++ + REI++ K
Sbjct: 558 DIEESIDESEQEEIERANTIKLAKREIAQKK 588
Score = 38 (18.4 bits), Expect = 1.4e-09, Sum P(4) = 1.4e-09
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 21 WREYNNVDPSFLDDLNSRDSGFDSQTGCD 49
W + + P +DLNS + FD + D
Sbjct: 374 WSLLHFLLPEIFNDLNSFQNWFDFSSVLD 402
Score = 37 (18.1 bits), Expect = 7.5e-14, Sum P(4) = 7.5e-14
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 173 ENNGAVALMDNRKR 186
+NNG +++ RKR
Sbjct: 402 DNNGQTDMIERRKR 415
>RGD|1565734 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent repair
deficiency complementation group 6 - like" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1565734 GO:GO:0005524 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
OrthoDB:EOG4FR0RD EMBL:CH473966 IPI:IPI00362012
RefSeq:NP_001092144.1 UniGene:Rn.72855 Ensembl:ENSRNOT00000004310
GeneID:317252 KEGG:rno:317252 UCSC:RGD:1565734 NextBio:671491
Uniprot:D4A0G9
Length = 1230
Score = 186 (70.5 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 55/151 (36%), Positives = 81/151 (53%)
Query: 419 EAGIKTRFLLILLELSTNE--KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGK-Q 475
E+G K FL+ LLE +E + LVFSQ + L +I L+++ + L +DG
Sbjct: 460 ESG-KMIFLMALLERLQDEGHQTLVFSQSRQILNIIERLLKNKHF-----KTLRIDGTVT 513
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
+ +R+ I + + + + L +T+ G+ L ASRVV+ D WNP + QA+ R
Sbjct: 514 HLWEREKRIQLFQQ-NKEYSVFLLTTQVGGVGLTLTAASRVVIFDPSWNPATDAQAVDRV 572
Query: 536 YRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
YR+GQK V VY LIT T+E RRQ K
Sbjct: 573 YRIGQKENVVVYRLITCGTVEEKIYRRQVFK 603
Score = 99 (39.9 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 32/111 (28%), Positives = 53/111 (47%)
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
L+ R++ +K+F HQ+EG F++ KN G G I++ G GKT
Sbjct: 87 LLYRELYEKLFEHQKEGIAFLYSLY---------KN-----GRKGGILADDMGLGKTVQI 132
Query: 121 LVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW--GIDIP-FYNLNKPE 168
+ FL ++I P +++ TW +EF KW G+ + F+ +K E
Sbjct: 133 IAFLSGMFDASLVNHVLLIMPTNLINTWVKEFAKWTPGMRVKTFHGSSKNE 183
Score = 82 (33.9 bits), Expect = 2.5e-19, Sum P(3) = 2.5e-19
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTV 296
+ DE H ++ T + R++L+GTP QNN QEL + Q G +L T+
Sbjct: 226 ILDEAHKIKSASTKSAVCARAVPASNRLLLTGTPIQNNLQELWSLFDFACQ--GSLLGTL 283
Query: 297 R 297
+
Sbjct: 284 K 284
>UNIPROTKB|Q2NKX8 [details] [associations]
symbol:ERCC6L "DNA excision repair protein ERCC-6-like"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0000777 "condensed chromosome kinetochore" evidence=IEA]
[GO:0000087 "M phase of mitotic cell cycle" evidence=TAS]
[GO:0000236 "mitotic prometaphase" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_115566 Reactome:REACT_21300
GO:GO:0051301 GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000236 GO:GO:0000777 CTD:54821 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OMA:TKNGDLE EMBL:EU069463 EMBL:BC008808
EMBL:BC111486 EMBL:AK000112 EMBL:AK074719 EMBL:AY121802
IPI:IPI00552569 RefSeq:NP_060139.2 UniGene:Hs.47558
ProteinModelPortal:Q2NKX8 SMR:Q2NKX8 IntAct:Q2NKX8 STRING:Q2NKX8
PhosphoSite:Q2NKX8 DMDM:121948339 PaxDb:Q2NKX8 PeptideAtlas:Q2NKX8
PRIDE:Q2NKX8 DNASU:54821 Ensembl:ENST00000334463 GeneID:54821
KEGG:hsa:54821 UCSC:uc004eap.1 GeneCards:GC0XM071424
H-InvDB:HIX0016867 HGNC:HGNC:20794 HPA:HPA050492 MIM:300687
neXtProt:NX_Q2NKX8 PharmGKB:PA162385290 InParanoid:Q2NKX8
GenomeRNAi:54821 NextBio:57573 ArrayExpress:Q2NKX8 Bgee:Q2NKX8
CleanEx:HS_ERCC6L Genevestigator:Q2NKX8 Uniprot:Q2NKX8
Length = 1250
Score = 187 (70.9 bits), Expect = 2.6e-19, Sum P(3) = 2.6e-19
Identities = 60/169 (35%), Positives = 89/169 (52%)
Query: 402 ESFDVDSA-KLARLKLDPEAGIKTRFLLILLELSTNE--KVLVFSQYIEPLTLIMEQLRH 458
+S DVD ++ L E+G K FL+ LL+ +E + LVFSQ + L +I L++
Sbjct: 440 DSPDVDHIDQVTDDTLMEESG-KMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKN 498
Query: 459 RFNWREGQEVLYMDGK-QDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
R + L +DG + +R+ IN+ + + L +T+ G+ L A+RVV
Sbjct: 499 RHF-----KTLRIDGTVTHLLEREKRINLFQQNKDYS-VFLLTTQVGGVGLTLTAATRVV 552
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+ D WNP + QA+ R YR+GQK V VY LIT T+E RRQ K
Sbjct: 553 IFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFK 601
Score = 97 (39.2 bits), Expect = 2.6e-19, Sum P(3) = 2.6e-19
Identities = 34/128 (26%), Positives = 58/128 (45%)
Query: 44 SQTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGG 103
++ G D FT + L+ R++ ++F HQ+EG F++ S G
Sbjct: 71 AEQGDDEFTDVCNSGL-LLYRELHNQLFEHQKEGIAFLY--------------SLYRDGR 115
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW--GIDIP- 160
G I++ G GKT + FL ++I P +++ TW +EF KW G+ +
Sbjct: 116 KGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLIMPTNLINTWVKEFIKWTPGMRVKT 175
Query: 161 FYNLNKPE 168
F+ +K E
Sbjct: 176 FHGPSKDE 183
Score = 83 (34.3 bits), Expect = 2.6e-19, Sum P(3) = 2.6e-19
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTV 296
+ DE H + T I R++L+GTP QNN QEL + Q G +L T+
Sbjct: 226 ILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQELWSLFDFACQ--GSLLGTL 283
Query: 297 R 297
+
Sbjct: 284 K 284
>CGD|CAL0004569 [details] [associations]
symbol:orf19.2097 species:5476 "Candida albicans" [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0009378 "four-way junction
helicase activity" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0010994 "free
ubiquitin chain polymerization" evidence=IEA] [GO:0006301
"postreplication repair" evidence=IEA] [GO:0000209 "protein
polyubiquitination" evidence=IEA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR014905
Pfam:PF00176 Pfam:PF00271 Pfam:PF08797 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 SMART:SM00910
CGD:CAL0004569 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006281 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004386
InterPro:IPR017907 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000031 EMBL:AACQ01000030
RefSeq:XP_719543.1 RefSeq:XP_719667.1 ProteinModelPortal:Q5ACX1
STRING:Q5ACX1 GeneID:3638757 GeneID:3638827 KEGG:cal:CaO19.2097
KEGG:cal:CaO19.9644 KO:K15505 Uniprot:Q5ACX1
Length = 1084
Score = 192 (72.6 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 51/144 (35%), Positives = 72/144 (50%)
Query: 425 RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSI 484
R L L S N KV+VFSQ+ L +I +L+ E V DG+ ++ R +
Sbjct: 916 RHLKALHSQSPNSKVIVFSQFSSYLDIIQSELKLA---SEEFIVFKFDGRLNMNDRTKLL 972
Query: 485 NVLNDPSSQAR--IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKR 542
N P + I+L S KA G+NL ASR ++D W+P +E QAI R +R+GQ
Sbjct: 973 ESFNQPLEDGKVAILLLSLKAGGVGLNLTTASRAYMMDPWWSPSIEDQAIDRIHRIGQNE 1032
Query: 543 VVHVYHLITSETLEWDKLRRQARK 566
V V I ++E L+ Q RK
Sbjct: 1033 TVKVVRFIMENSIETKMLKIQERK 1056
Score = 127 (49.8 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 61/221 (27%), Positives = 103/221 (46%)
Query: 72 PHQREGFEFIWKNIAGG-IDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA--YM 128
P Q + ++ + N+ G + L++ +S GG I++ G GKT TL + + Y
Sbjct: 427 PTQNQTEKYFYANMYNGELSLEKPVIKSSLRGG---ILADEMGLGKTIATLALVNSVPYD 483
Query: 129 KL-HPRC-RP------VIIAPRSMLLTWEEEFKKWGIDIPFY-NLNKPELSGKENNGAVA 179
P+ RP +I+ P S+L W+ EF+K + L+ E +E N A +
Sbjct: 484 NFPEPKSDRPYASQTTLIVVPMSLLFQWKSEFEKCNNNSRHVCRLHYGE--DQETNLAWS 541
Query: 180 LMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLF--V 237
L + K+ ++ + Y GT +L RL ++ S EL + L F +
Sbjct: 542 LCNP---DNSKIPIVM-ITTY----GT-VLNEFTRLSKRRNSKGELPKVGLYSVKFFRII 592
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
DEGH RN +T K++ +++ R+ IL+GTP N +L
Sbjct: 593 LDEGHNIRNRNTKTAKSVYELQSSRKWILTGTPIVNRLDDL 633
>ASPGD|ASPL0000030172 [details] [associations]
symbol:AN5483 species:162425 "Emericella nidulans"
[GO:0045005 "maintenance of fidelity involved in DNA-dependent DNA
replication" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:BN001305 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000094 OrthoDB:EOG4NZZ2M
RefSeq:XP_663087.1 ProteinModelPortal:Q5B1U7
EnsemblFungi:CADANIAT00003605 GeneID:2871773 KEGG:ani:AN5483.2
HOGENOM:HOG000216663 OMA:LETIRPD Uniprot:Q5B1U7
Length = 1184
Score = 227 (85.0 bits), Expect = 4.7e-19, Sum P(3) = 4.7e-19
Identities = 50/126 (39%), Positives = 76/126 (60%)
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSI-NVLNDPSSQA 494
NEK+++FSQ+ L L+ + REG DG R S++ + +DPS
Sbjct: 1020 NEKIIIFSQFTSLLDLLEIPIA-----REGHRYRRYDGSMKPADRNSAVLDFTDDPS--C 1072
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
++ML S KA G+NLV A+ V++ D WNP+VE QA+ RA+R+GQ R VHV+ ++ ET
Sbjct: 1073 KVMLVSLKAGNSGLNLVAANHVIIFDPFWNPYVEEQAVDRAHRIGQLREVHVHRILVPET 1132
Query: 555 LEWDKL 560
+E D++
Sbjct: 1133 VE-DRI 1137
Score = 78 (32.5 bits), Expect = 4.7e-19, Sum P(3) = 4.7e-19
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR 286
+ DE +N T A R+ T R +SGTP NN +EL + L +R
Sbjct: 624 IIDEAQCIKNRATQSAIACCRLNTTYRWCMSGTPMMNNVEELHSLLKFLR 673
Score = 56 (24.8 bits), Expect = 4.7e-19, Sum P(3) = 4.7e-19
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHP-RCRPVIIAPRSMLLTWEEEFKK 154
G I++ G GKT + + + P R +IIAP +++ W+ E +K
Sbjct: 492 GGILADDMGLGKTIQAIALMVSRPSSDPERKTTLIIAPVALMQQWKREIEK 542
>FB|FBgn0022787 [details] [associations]
symbol:Hel89B "Helicase 89B" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0006963 "positive regulation of antibacterial
peptide biosynthetic process" evidence=IMP] [GO:0042742 "defense
response to bacterium" evidence=IMP] [GO:0045087 "innate immune
response" evidence=IMP] [GO:0008063 "Toll signaling pathway"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0042742 GO:GO:0045087
GO:GO:0004003 GO:GO:0019730 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008063 GO:GO:0006963
InterPro:IPR022707 Pfam:PF12054 EMBL:AF033104
ProteinModelPortal:Q71V44 SMR:Q71V44 STRING:Q71V44 PaxDb:Q71V44
PRIDE:Q71V44 FlyBase:FBgn0022787 InParanoid:Q71V44
OrthoDB:EOG4ZGMT5 ArrayExpress:Q71V44 Bgee:Q71V44 Uniprot:Q71V44
Length = 1924
Score = 201 (75.8 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 60/174 (34%), Positives = 90/174 (51%)
Query: 405 DVD-SAKLARLK---LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
D++ SAKL LK LD G++T E + + L+F Q L ++ + L R
Sbjct: 1686 DIEHSAKLPALKQLLLDCGIGVQT-------ESVSQHRALIFCQLKAMLDIVEQDLLRRH 1738
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGINLVGASRVVLL 519
L +DG +RQ +N N DPS ++L +T G+NL GA V+ +
Sbjct: 1739 --LPSVTYLRLDGSVPASQRQDIVNNFNSDPSID--VLLLTTMVGGLGLNLTGADTVIFV 1794
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+ WNP + QA+ RA+R+GQK+VV+VY LIT +LE + Q K+ +N V
Sbjct: 1795 EHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKIMGLQKFKILTANTV 1848
Score = 121 (47.7 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRT 295
V DEGH +N T KA+ R+K R+ILSGTP QNN EL + + F G +
Sbjct: 1482 VLDEGHIIKNGKTKSSKAIKRLKANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQF 1541
Query: 296 VRKSGREISKAKHA 309
V++ R I ++ A
Sbjct: 1542 VQRFSRPILSSRDA 1555
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 191 (72.3 bits), Expect = 5.0e-19, Sum P(3) = 5.0e-19
Identities = 46/164 (28%), Positives = 84/164 (51%)
Query: 416 LDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGK 474
L + G + ++L +L N + L+F+Q +T +++ L N+ G + +DG
Sbjct: 1241 LQYDCGKLQKLAILLQQLKDNGHRALIFTQ----MTKVLDVLEQFLNYH-GYLYMRLDGA 1295
Query: 475 QDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISR 534
++ RQ N S+ + + S+++ GINL GA V+ D WNP +++Q R
Sbjct: 1296 TKIEDRQILTERFNT-DSRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDR 1354
Query: 535 AYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
+R+GQ R VH+Y ++ T+E + L++ +K N+V D
Sbjct: 1355 CHRIGQTRDVHIYRFVSEHTIESNILKKANQKRQLDNVVIQEGD 1398
Score = 99 (39.9 bits), Expect = 5.0e-19, Sum P(3) = 5.0e-19
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
V DE H +N + ++AL T+RR++L+GTP QNN EL + L
Sbjct: 822 VLDEAHNIKNFRSTRWQALLNFNTQRRLLLTGTPLQNNLAELWSLL 867
Score = 77 (32.2 bits), Expect = 5.0e-19, Sum P(3) = 5.0e-19
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPR-CRP-VIIAPRSMLLTWEEEFKKW--GIDI 159
NG I++ G GKT T+ L AY+ P +I+ P S+LL WE EFK++ G +
Sbjct: 716 NG-ILADEMGLGKTIQTISLL-AYLACEKENWGPHLIVVPTSVLLNWEMEFKRFAPGFKV 773
Query: 160 PFYNLNKPELSGKENNG 176
Y P+ ++ G
Sbjct: 774 LTY-YGSPQQRKEKRKG 789
>UNIPROTKB|Q03468 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0007256 "activation of JNKK activity" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010224 "response to UV-B" evidence=IEA] [GO:0010332 "response
to gamma radiation" evidence=IEA] [GO:0045494 "photoreceptor cell
maintenance" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0008023 "transcription
elongation factor complex" evidence=IDA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0009411 "response to UV"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006979
"response to oxidative stress" evidence=IDA] [GO:0006284
"base-excision repair" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0006979
GO:GO:0005730 GO:GO:0032403 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 Orphanet:279 GO:GO:0045494
GO:GO:0010332 GO:GO:0006366 GO:GO:0004386 GO:GO:0010165
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 EMBL:CH471187 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 Orphanet:1466 EMBL:L04791 EMBL:AY204752 EMBL:AL138760
IPI:IPI00414779 PIR:A44224 RefSeq:NP_000115.1 UniGene:Hs.654449
ProteinModelPortal:Q03468 SMR:Q03468 DIP:DIP-193N IntAct:Q03468
MINT:MINT-1193928 STRING:Q03468 PhosphoSite:Q03468 DMDM:416959
PaxDb:Q03468 PRIDE:Q03468 Ensembl:ENST00000355832 GeneID:2074
KEGG:hsa:2074 UCSC:uc001jhr.4 CTD:2074 GeneCards:GC10M050663
HGNC:HGNC:3438 MIM:133540 MIM:214150 MIM:278800 MIM:600630
MIM:609413 MIM:613761 neXtProt:NX_Q03468 Orphanet:90321
Orphanet:90322 Orphanet:90324 Orphanet:1569 Orphanet:178338
PharmGKB:PA27852 HOGENOM:HOG000170952 HOVERGEN:HBG051502
InParanoid:Q03468 KO:K10841 OMA:NGEMQIF OrthoDB:EOG476JZF
PhylomeDB:Q03468 ChiTaRS:ERCC6 GenomeRNAi:2074 NextBio:8437
ArrayExpress:Q03468 Bgee:Q03468 CleanEx:HS_ERCC6
Genevestigator:Q03468 GermOnline:ENSG00000032514 GO:GO:0000303
Uniprot:Q03468
Length = 1493
Score = 193 (73.0 bits), Expect = 6.1e-19, Sum P(4) = 6.1e-19
Identities = 51/137 (37%), Positives = 76/137 (55%)
Query: 437 EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI 496
++VL+FSQ + L ++ LR + L MDG + RQ I N+ +S +
Sbjct: 856 QRVLLFSQSRQMLDILEVFLR-----AQKYTYLKMDGTTTIASRQPLITRYNEDTS-IFV 909
Query: 497 MLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
L +T+ G+NL GA+RVV+ D WNP + QA RA+R+GQK+ V VY L+T+ T+E
Sbjct: 910 FLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIE 969
Query: 557 WDKLRRQARKVWWSNMV 573
RQ K + +N V
Sbjct: 970 EKIYHRQIFKQFLTNRV 986
Score = 103 (41.3 bits), Expect = 6.1e-19, Sum P(4) = 6.1e-19
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
+ DEGH RN + + A + +T RIILSG+P QNN +EL
Sbjct: 644 ILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLREL 685
Score = 69 (29.3 bits), Expect = 6.1e-19, Sum P(4) = 6.1e-19
Identities = 29/99 (29%), Positives = 46/99 (46%)
Query: 62 VPRDVRKKMFPHQREGFEFIWK---NIAGGIDLDELKNSTSTGGGNGC-IISHAPGTGKT 117
VP + KK+F +Q+ G ++W+ AGGI DE+ G G II+ G +
Sbjct: 499 VPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEM------GLGKTIQIIAFLAGLSYS 552
Query: 118 GL-TLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155
+ T + L P VI+ P +++ W +EF W
Sbjct: 553 KIRTRGSNYRFEGLGPT---VIVCPTTVMHQWVKEFHTW 588
Score = 44 (20.5 bits), Expect = 6.1e-19, Sum P(4) = 6.1e-19
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 574 FPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSETL 610
FP+S+ ND T++ E E K E A + +N S+ L
Sbjct: 1056 FPASNISVNDATSSEEKSEAKGAEVNA-VTSNRSDPL 1091
>ASPGD|ASPL0000044476 [details] [associations]
symbol:AN2255 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR001660 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50105 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 EMBL:BN001307 Gene3D:1.10.150.50 InterPro:IPR013761
SUPFAM:SSF47769 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000037 RefSeq:XP_659859.1
ProteinModelPortal:Q5BB25 EnsemblFungi:CADANIAT00008947
GeneID:2874753 KEGG:ani:AN2255.2 HOGENOM:HOG000172620 OMA:ADEAHKM
OrthoDB:EOG4S7NZ2 Uniprot:Q5BB25
Length = 1832
Score = 179 (68.1 bits), Expect = 6.2e-19, Sum P(4) = 6.2e-19
Identities = 51/146 (34%), Positives = 77/146 (52%)
Query: 411 LARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY 470
L ++L A I R +I + +KVLVFSQ + L + E+L N ++
Sbjct: 1341 LKAVELSVRAVITKR--IIDESIRAGDKVLVFSQSLHTLDYL-ERLLKVTN----RQYSR 1393
Query: 471 MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQ 530
+DG+ RQ++ N Q + L ST+A G+N+ GA+RV++ D ++P E Q
Sbjct: 1394 LDGQTPAATRQAATKKFNQGEKQ--VYLISTRAGGLGLNITGANRVIIFDFSFSPIWEEQ 1451
Query: 531 AISRAYRLGQKRVVHVYHLITSETLE 556
AI RAYRLGQ++ V VY I T +
Sbjct: 1452 AIGRAYRLGQQKPVFVYRFIAGGTFQ 1477
Score = 134 (52.2 bits), Expect = 6.2e-19, Sum P(4) = 6.2e-19
Identities = 39/159 (24%), Positives = 71/159 (44%)
Query: 132 PRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD-NRKRGRGK 190
P R ++I P S++ W +EF W P L E+N V L + + +G
Sbjct: 1010 PEARTLVICPSSLIENWRDEFVMW---TPQDVLLTVRQVSSEDNMDVRLAEVSMWYEKGG 1066
Query: 191 VGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTC 250
V LI + +W + S L + +L LL+ P + + DE H +N D+
Sbjct: 1067 VLLISFDIFRNWVLNQATAKKSPPLSDS--KHQDLKHWLLEGPSIIIADEAHKMKNPDSA 1124
Query: 251 MFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF 289
+A + +++ RI L+G+P NN + ++ + ++
Sbjct: 1125 TSQAAMQFRSKSRIALTGSPLANNLGDYYTMVNWISYDY 1163
Score = 58 (25.5 bits), Expect = 6.2e-19, Sum P(4) = 6.2e-19
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT 117
HQ G +F+W+ +L E K+ GC+++H G GKT
Sbjct: 942 HQLSGIQFMWR------ELVEDKSQ------EGCLLAHTMGLGKT 974
Score = 43 (20.2 bits), Expect = 6.2e-19, Sum P(4) = 6.2e-19
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 282 LSLVRQEFGEVLRTVRKSGR--EISKAKHASLISSIGRCANH 321
L+ +++E ++ GR E+++ + S +S +G C NH
Sbjct: 1233 LTKIQKEAYDMYAAFILQGRMDEVTQTQLWSWLSILGLCCNH 1274
>UNIPROTKB|A6QQR4 [details] [associations]
symbol:ERCC6L "DNA excision repair protein ERCC-6-like"
species:9913 "Bos taurus" [GO:0000777 "condensed chromosome
kinetochore" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR011990
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005 PROSITE:PS50293
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0051301
GO:GO:0007067 GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000777 EMBL:BC149963 EMBL:BT026201 IPI:IPI00694211
RefSeq:NP_001096000.1 UniGene:Bt.74729 ProteinModelPortal:A6QQR4
STRING:A6QQR4 PRIDE:A6QQR4 Ensembl:ENSBTAT00000007362 GeneID:782916
KEGG:bta:782916 CTD:54821 GeneTree:ENSGT00590000083118
HOGENOM:HOG000074172 HOVERGEN:HBG107854 InParanoid:A6QQR4
OMA:TKNGDLE OrthoDB:EOG4FR0RD NextBio:20925771 ArrayExpress:A6QQR4
Uniprot:A6QQR4
Length = 1242
Score = 191 (72.3 bits), Expect = 6.3e-19, Sum P(3) = 6.3e-19
Identities = 60/169 (35%), Positives = 90/169 (53%)
Query: 402 ESFDVDSA-KLARLKLDPEAGIKTRFLLILLELSTNE--KVLVFSQYIEPLTLIMEQLRH 458
+S DVD +++ L E+G K FL+ LL+ +E + LVFSQ L +I L++
Sbjct: 442 DSSDVDHIDQISDDTLMEESG-KMLFLMDLLKKLRDEGHQTLVFSQSRRILNIIERLLKN 500
Query: 459 RFNWREGQEVLYMDGK-QDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
R ++L +DG + +R+ I++ + + L +T+ G+ L ASRVV
Sbjct: 501 RHF-----KILRIDGTITHLVEREKRISLFQQNKDYS-VFLLTTQVGGVGLTLTAASRVV 554
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+ D WNP + QA+ R YR+GQK V VY LIT T+E RRQ K
Sbjct: 555 IFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFK 603
Score = 89 (36.4 bits), Expect = 6.3e-19, Sum P(3) = 6.3e-19
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTV 296
+ DE H ++ T I RI+L+GTP QNN QEL + Q G +L T+
Sbjct: 226 ILDEAHKIKSSSTKSAICARAIPASNRILLTGTPIQNNLQELWSLFDFACQ--GSLLGTL 283
Query: 297 R 297
R
Sbjct: 284 R 284
Score = 83 (34.3 bits), Expect = 6.3e-19, Sum P(3) = 6.3e-19
Identities = 28/111 (25%), Positives = 50/111 (45%)
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
L+ +++ +++ +Q+EG F++ S G G I++ G GKT
Sbjct: 87 LLYQELHNQLYEYQKEGIAFLY--------------SLYRDGRRGGILADDMGLGKTVQI 132
Query: 121 LVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW--GIDIP-FYNLNKPE 168
+ FL ++I P S++ TW EF KW G+ + F+ +K E
Sbjct: 133 IAFLSGMFDASLVNHVLLIMPTSLISTWLREFVKWTPGMRVKTFHGPSKDE 183
>UNIPROTKB|F1Q2U2 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:AAEX03011032
Ensembl:ENSCAFT00000017488 Uniprot:F1Q2U2
Length = 898
Score = 210 (79.0 bits), Expect = 6.7e-19, Sum P(3) = 6.7e-19
Identities = 87/356 (24%), Positives = 153/356 (42%)
Query: 226 SGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
S L P + V DE H +N ++ + K L ++L+GTP QN+ QEL + LS
Sbjct: 162 SSFLKSFPWSVLVVDEAHRLKNQNSLLHKTLLEFSVVFSLLLTGTPIQNSLQELYSLLSF 221
Query: 285 V------RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPFV 338
V +++ G+ ++ + +E A + L + R V
Sbjct: 222 VEPDLFPKEQVGDFVQRYQDIEKESDSA--SELHKLLQPFLLRRVKAEVATELPKKTEVV 279
Query: 339 NVHKGTVLQESLPGLRHSVVILQP-DEFQKRLCKAVEGVKSFVELNYCXXXXXXXXXXXX 397
H + LQ+ + ++++ D F+ + K V+ +L C
Sbjct: 280 LYHGMSALQKKY----YKAILMKDLDAFESEMAKKVKLQNVLSQLRKCVDHPYLFEGETV 335
Query: 398 QQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLR 457
FF + + L L+L A + FL L+ +VL+FSQ + L ++ + +
Sbjct: 336 P-FFLTLLFMTTPLKNLEL---AALS--FLF----LARGHRVLLFSQMTQMLDILQDYMD 385
Query: 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
+R G +DG V+ + + + N + L ST+A G+NL A V+
Sbjct: 386 YR-----GYSYERVDGS--VRGEERHLAIKNFGQQPVFVFLLSTRAGGVGMNLTAADTVI 438
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+D +NP + QA +RA+R+GQ + V V LI +T+E R+ A K+ +N +
Sbjct: 439 FVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNAI 494
Score = 169 (64.5 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 56/205 (27%), Positives = 99/205 (48%)
Query: 428 LILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVL 487
L L L+ +VL+FSQ + L ++ + + +R G +DG V+ + + +
Sbjct: 356 LSFLFLARGHRVLLFSQMTQMLDILQDYMDYR-----GYSYERVDGS--VRGEERHLAIK 408
Query: 488 NDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVY 547
N + L ST+A G+NL A V+ +D +NP + QA +RA+R+GQ + V V
Sbjct: 409 NFGQQPVFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVI 468
Query: 548 HLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPS 607
LI +T+E R+ A K+ +N + GG+ A +P D L+ ++++
Sbjct: 469 RLIGRDTVEEIVYRKAASKLQLTNAIIE----GGHFTLGAQKPAADADLQ-LSEILKFGL 523
Query: 608 ETLINAIIPQPKETELIETFGEFLN 632
+ L+++ E +L GE N
Sbjct: 524 DKLLSSQGSTMDEIDLERILGETKN 548
Score = 84 (34.6 bits), Expect = 6.7e-19, Sum P(3) = 6.7e-19
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 104 NGCIISHAPGTGKTGLTL-VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW--GIDIP 160
NGCI+ G GKT T+ +F+ +L+ +I+ P S+L W EE +++ G+
Sbjct: 67 NGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLSVLSNWTEEMERFAPGLSCV 126
Query: 161 FYNLNKPE 168
Y +K E
Sbjct: 127 MYAGDKEE 134
Score = 62 (26.9 bits), Expect = 6.7e-19, Sum P(3) = 6.7e-19
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 558 DKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQL-YNNPSETLINAI 614
+K+ + + VWW + + S + + E LED+ E AQL Y +P T I +
Sbjct: 667 EKVEHEKKMVWWESNNYQSFCLPSEE--SEPEDLEDQEDESSAQLDYEDPDSTAIKYV 722
>TIGR_CMR|BA_1804 [details] [associations]
symbol:BA_1804 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 Pfam:PF04434 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0008270 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000026038 OMA:NTLNAEM InterPro:IPR013663
Pfam:PF08455 RefSeq:NP_844228.1 RefSeq:YP_018441.1
RefSeq:YP_027937.1 ProteinModelPortal:Q81S67 IntAct:Q81S67
DNASU:1086172 EnsemblBacteria:EBBACT00000012419
EnsemblBacteria:EBBACT00000014433 EnsemblBacteria:EBBACT00000022268
GeneID:1086172 GeneID:2814636 GeneID:2849386 KEGG:ban:BA_1804
KEGG:bar:GBAA_1804 KEGG:bat:BAS1671 ProtClustDB:CLSK916372
BioCyc:BANT260799:GJAJ-1742-MONOMER
BioCyc:BANT261594:GJ7F-1813-MONOMER Uniprot:Q81S67
Length = 1064
Score = 219 (82.2 bits), Expect = 7.2e-19, Sum P(3) = 7.2e-19
Identities = 58/171 (33%), Positives = 94/171 (54%)
Query: 414 LKLDPEAGIKTRF--LLILLE--LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVL 469
L +D G +F LL +LE ST +++L+FSQ+ + L++I +L R+
Sbjct: 886 LFVDDYKGSSAKFEQLLDILEECRSTGKRILIFSQFTKMLSIIGRELN-----RQAIPYF 940
Query: 470 YMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVER 529
Y+DG ++R N N+ + + L S KA G+NL GA V+L D+ WNP VE+
Sbjct: 941 YLDGNTPSQERVELCNRFNE--GEGDLFLISLKAGGTGLNLTGADTVILYDLWWNPAVEQ 998
Query: 530 QAISRAYRLGQKRVVHVYHLITSETLEWDKLR--RQARKVWWSNMVFPSSD 578
QA RAYR+GQK V V L+ T+E +K+ ++++K + ++ P +
Sbjct: 999 QAADRAYRMGQKNTVQVIKLVAHGTIE-EKMHELQESKKNLIAEVIEPGEE 1048
Score = 75 (31.5 bits), Expect = 7.2e-19, Sum P(3) = 7.2e-19
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-------RQ 287
LF+ DE +N T +A+ I+ R L+GTP +N+ +EL + +V R+
Sbjct: 735 LFL-DEAQAFKNPTTQTARAVKTIQAEYRFGLTGTPVENSLEELWSIFHVVFPELLPGRK 793
Query: 288 EFGEVLR 294
EFG++ R
Sbjct: 794 EFGDLRR 800
Score = 64 (27.6 bits), Expect = 7.2e-19, Sum P(3) = 7.2e-19
Identities = 13/53 (24%), Positives = 31/53 (58%)
Query: 105 GCIISHAPGTGKTGLTLVFLQAYM-KLHPRCRPV-IIAPRSMLLTWEEEFKKW 155
G I++ G GKT ++ ++ + + ++ + P+ +++P S++ W E KK+
Sbjct: 633 GGILADDMGLGKTLQSIAYIDSVLPEIREKKLPILVVSPSSLVYNWLSELKKF 685
Score = 42 (19.8 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 282 LSLVRQEFGEVLRTVRKSG 300
LSL +EF E+ + V++SG
Sbjct: 533 LSLESKEFNEINQFVKESG 551
>UNIPROTKB|E1BS47 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02022009 EMBL:AADN02022010
IPI:IPI00598234 Ensembl:ENSGALT00000005903 ArrayExpress:E1BS47
Uniprot:E1BS47
Length = 1326
Score = 188 (71.2 bits), Expect = 8.3e-19, Sum P(3) = 8.3e-19
Identities = 58/203 (28%), Positives = 96/203 (47%)
Query: 398 QQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQL 456
++F E+ + DS + AG +L +L +VL+FSQ + L ++ + L
Sbjct: 453 EEFKETHNADSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYL 512
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
R R E + DG+ RQ++I+ + P S + L T+A GINL A
Sbjct: 513 IQR---RYPYERI--DGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTC 567
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPS 576
++ D WNP + QA +R +R+GQ + V +Y LIT + E + + + K+ V S
Sbjct: 568 IIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQS 627
Query: 577 SDGGGNDQTTASEPLEDKILEEM 599
G N T + L K +E++
Sbjct: 628 MSGREN-ATNGVQQLSKKEIEDL 649
Score = 88 (36.0 bits), Expect = 8.3e-19, Sum P(3) = 8.3e-19
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 106 CIISHAPGTGKTGLTLVFL-QAYMK-LHPRCRPVIIAPRSMLLTWEEEFKKW 155
CI++ G GKT ++ FL + Y+K +H ++IAP S + WE EF+ W
Sbjct: 175 CILADEMGLGKTIQSITFLYEIYLKGIHGPF--LVIAPLSTIPNWEREFRTW 224
Score = 87 (35.7 bits), Expect = 8.3e-19, Sum P(3) = 8.3e-19
Identities = 29/98 (29%), Positives = 50/98 (51%)
Query: 195 RYVKLYS--WKMGTG-ILGLSYRLFEKLVSGDELSGILLDLPGL-------FVFDEGHTP 244
R ++LY +K G ++ SY+ F +++ E+ IL D P L V DE H
Sbjct: 240 RTIQLYEMYFKDPQGRVIKGSYK-FHAIITTFEM--ILTDCPELRNIPWRCVVIDEAHRL 296
Query: 245 RNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
+N + + + L + +++L+GTP QN +EL + L
Sbjct: 297 KNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLL 334
Score = 54 (24.1 bits), Expect = 0.00010, Sum P(3) = 0.00010
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 442 FSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQD 476
F + + +I + ++H+F+W + + +D K D
Sbjct: 1162 FYRVVSTFGIIFDPIKHQFDWNQFRAFARLDKKSD 1196
Score = 42 (19.8 bits), Expect = 3.3e-14, Sum P(3) = 3.3e-14
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 357 VVILQPDEFQKRLCKAVEGVK 377
VVI + + R CK +EG+K
Sbjct: 288 VVIDEAHRLKNRNCKLLEGLK 308
>RGD|1306794 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1306794 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006338 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GeneTree:ENSGT00560000076896 OrthoDB:EOG4PG601
IPI:IPI00767719 Ensembl:ENSRNOT00000019358 UCSC:RGD:1306794
Uniprot:D4AAG9
Length = 904
Score = 152 (58.6 bits), Expect = 8.9e-19, Sum P(3) = 8.9e-19
Identities = 45/119 (37%), Positives = 67/119 (56%)
Query: 427 LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSIN 485
LLI L N +VL+FSQ + L ++ E L++R F ++ +DG +RQ+ ++
Sbjct: 794 LLIRLRERGN-RVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIGELRRQA-LD 845
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVV 544
N S+ L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V
Sbjct: 846 HFNAXGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQV 904
Score = 111 (44.1 bits), Expect = 8.9e-19, Sum P(3) = 8.9e-19
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FG--EVLRT 295
DE H +NDD+ ++K L K+ R++++GTP QN+ +EL + L + E F E
Sbjct: 612 DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEE 671
Query: 296 VRKSGREISKAK-HASL 311
GRE A H L
Sbjct: 672 EHGKGREYGYASLHKEL 688
Score = 96 (38.9 bits), Expect = 8.9e-19, Sum P(3) = 8.9e-19
Identities = 40/145 (27%), Positives = 59/145 (40%)
Query: 15 PSRRAEWREYNNVDPSFLDDLNSRDSGFDSQTGCDPFTHAQGTVWELVPRDVRKKMFPHQ 74
P W + + F ++ S S+T PF + V + PR V K P
Sbjct: 415 PYSECSWEDGALISKKFQTCIDEYFSRNQSKT--TPFKDCK--VLKQRPRFVALKKQPSY 470
Query: 75 ---REGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
EG E + G L+ L +S G N CI++ G GKT T+ FL H
Sbjct: 471 IGGHEGLELRDYQLNG---LNWLAHSWCKG--NSCILADEMGLGKTIQTISFLNYLFHEH 525
Query: 132 PRCRP-VIIAPRSMLLTWEEEFKKW 155
P +++ P S L +W+ E + W
Sbjct: 526 QLYGPFLLVVPLSTLTSWQREIQTW 550
>UNIPROTKB|Q57X81 [details] [associations]
symbol:JBP2 "Bifunctional helicase and thymine dioxygenase
JBP2" species:999953 "Trypanosoma brucei brucei strain 927/4
GUTat10.1" [GO:0005634 "nucleus" evidence=IDA] [GO:0050341 "thymine
dioxygenase activity" evidence=IMP] [GO:0070580 "base J metabolic
process" evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0016702 GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0050341
GO:GO:0070580 InterPro:IPR024779 Pfam:PF12851 EMBL:AC159421
RefSeq:XP_846088.1 ProteinModelPortal:Q57X81 GeneID:3658676
KEGG:tbr:Tb927.7.4650 OMA:LEHGNTE Uniprot:Q57X81
Length = 1077
Score = 165 (63.1 bits), Expect = 9.1e-19, Sum P(2) = 9.1e-19
Identities = 52/180 (28%), Positives = 88/180 (48%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW---GIDI 159
G+GC+++ G GKT ++L +Y+ + C +I+AP+++L W +E KKW G+
Sbjct: 537 GDGCVLALTMGLGKTLVSLTICYSYIYNNGPCDILIVAPKTLLQHWMQEAKKWKDYGLVF 596
Query: 160 P-FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEK 218
P F LN + S E++ L + ++G K Y + + G + + F
Sbjct: 597 PGFIVLNNVDSSSFEDD----LSNYEQQGT----TTNPKKSYVFVINPGYI----KSFLS 644
Query: 219 LVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
V G P L V DEGH + ++ + + L + R++L+GTP QNN +EL
Sbjct: 645 RVKGFR--------PALIVVDEGHCISSKESKLREVLDSLYCSARVVLTGTPVQNNAEEL 696
Score = 150 (57.9 bits), Expect = 9.1e-19, Sum P(2) = 9.1e-19
Identities = 47/149 (31%), Positives = 74/149 (49%)
Query: 420 AGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLR-HRFNWREGQEVLYMDGKQDV 477
+G T + IL + EK ++FSQYI I L ++ + V+ + GK
Sbjct: 869 SGKLTALISILHSIFEKMEKAVIFSQYIGSQDFIARTLTAYKIS------VVTIRGKDCQ 922
Query: 478 KKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYR 537
++R+ + + D + ++ ST+ G++L A+ V+L D WNP VE QAI+R YR
Sbjct: 923 QRRRRVVEMFRDDKN-VLCLVVSTQIGAYGLDLTAANHVILWDTWWNPQVESQAIARCYR 981
Query: 538 LGQKRVVHVYHLITSETLEWDKLRRQARK 566
Q + V Y L S + L+ QARK
Sbjct: 982 QNQSKAVIAYKL-ASGFEDATVLKAQARK 1009
Score = 42 (19.8 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 20 EWREYNNVDPSFLDDLNSRDS 40
+W++Y V P F+ LN+ DS
Sbjct: 588 KWKDYGLVFPGFIV-LNNVDS 607
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 202 (76.2 bits), Expect = 9.5e-19, Sum P(3) = 9.5e-19
Identities = 53/174 (30%), Positives = 87/174 (50%)
Query: 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+ ++L+F Q + + IME H WR L +DG R + V NDP+++
Sbjct: 751 SGHRILMFFQMTQIMN-IMEDYLHYRQWR----YLRLDGSTKADDRSKLLGVFNDPTAEV 805
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
+ L ST+A G+NL A V++ D WNP + QA RA+R+GQ + V +Y LIT ++
Sbjct: 806 NLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEVRIYRLITEKS 865
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSE 608
+E + L R K+ V + G ++++T E + L + + N E
Sbjct: 866 VEENILARAQYKLDIDGKVIQA--GKFDNKSTPEE--REAFLRSLLENENGEEE 915
Score = 90 (36.7 bits), Expect = 9.5e-19, Sum P(3) = 9.5e-19
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 237 VFDEGHTPRNDDTCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLV 285
+ DEGH +N + + L+ +R R+IL+GTP QNN EL L+ V
Sbjct: 542 IIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLPELWALLNFV 591
Score = 68 (29.0 bits), Expect = 9.5e-19, Sum P(3) = 9.5e-19
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDI 159
NG I++ G GKT T+ + ++ + P ++I P S L W EF++W I
Sbjct: 437 NG-ILADEMGLGKTIQTISLITHLIEKKRQNGPFLVIVPLSTLTNWTMEFERWAPSI 492
Score = 44 (20.5 bits), Expect = 4.8e-14, Sum P(3) = 4.8e-14
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 255 LSRIKTRRRIILSGTPFQNNFQELENTLS 283
LSRIK II G +N +L NTL+
Sbjct: 533 LSRIKWIYMIIDEGHRMKNTQSKLTNTLT 561
Score = 39 (18.8 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 254 ALSRIKTRR-RIILSGTPFQNNF--QELENTLSLVRQEFGEVLRTVRKSGREIS-KAKHA 309
A+ R+ RR +++ T Q+ + ++Q+ + L+TV GREI+ + K+A
Sbjct: 230 AVERMSCRRPKLVPQATRLTEVLERQQRSDRERRLKQKQCDYLQTVCAHGREINVRTKNA 289
>RGD|2323132 [details] [associations]
symbol:LOC100359912 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin a5-like" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:2323132 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00390811
Ensembl:ENSRNOT00000031851 Uniprot:F1M7H3
Length = 760
Score = 212 (79.7 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 51/136 (37%), Positives = 77/136 (56%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ +T +++ L WR E +DG+ +RQ SIN N+P+S +
Sbjct: 222 RVLIFSQ----MTRVLDILEDYCMWRN-YEYCRLDGQTPHDERQDSINAYNEPNSTKFVF 276
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
+ ST+A GINL A V+L D WNP V+ QA+ RA+R+GQ + V V+ IT T+E
Sbjct: 277 MLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEE 336
Query: 558 DKLRRQARKVWWSNMV 573
+ R K+ ++V
Sbjct: 337 RIVERAEMKLRLDSIV 352
Score = 96 (38.9 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
V DE H +N+ + + + + KT R++L+GTP QNN EL + L+ +
Sbjct: 27 VIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFL 75
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 186 (70.5 bits), Expect = 1.5e-18, Sum P(4) = 1.5e-18
Identities = 52/172 (30%), Positives = 89/172 (51%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ ++ +++ L +RE + +DG + R ++I+ N P S+ +
Sbjct: 508 RVLIFSQ----MSRVLDILEDYCVFRE-YKYSRIDGGTAHEDRIAAIDEYNKPGSEKFVF 562
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L +T+A GINL A V+L D WNP + QA+ RA+R+GQ + V+VY + T+E
Sbjct: 563 LLTTRAGGLGINLTTADIVILFDSDWNPQADLQAMDRAHRIGQTKQVYVYRFLVDNTIEE 622
Query: 558 DKLRRQARKVWWSNMVFPSSDGGGNDQTTAS-EPLEDKILEEMAQLYNNPSE 608
L R A+K+ +V + A+ + L I A+++N S+
Sbjct: 623 KVLERAAQKLHLDRLVIQQGRAQVAAKAAANKDELLSMIQHGAAKVFNKDSD 674
Score = 97 (39.2 bits), Expect = 1.5e-18, Sum P(4) = 1.5e-18
Identities = 18/56 (32%), Positives = 34/56 (60%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS-LVRQEFGE 291
+ DE H +N+++ + + + +R R++++GTP QNN EL L+ L+ FG+
Sbjct: 312 IIDEAHRIKNEESSLAQVIRLFNSRNRLLITGTPLQNNIHELWALLNFLLPDVFGD 367
Score = 74 (31.1 bits), Expect = 1.5e-18, Sum P(4) = 1.5e-18
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 97 STSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKW 155
S G +G I++ G GKT T+ FL + P ++I P+S L W+ EF KW
Sbjct: 199 SLHENGISG-ILADEMGLGKTLQTISFLGYLRHIMGITGPHLVIVPKSTLDNWKREFGKW 257
Score = 43 (20.2 bits), Expect = 1.5e-18, Sum P(4) = 1.5e-18
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 299 SGREISKAKHASLISSIGRCANH 321
+G+ SK + +++ + +C NH
Sbjct: 444 NGKRESKTRLLNIVMQLRKCCNH 466
>DICTYBASE|DDB_G0293012 [details] [associations]
symbol:DDB_G0293012 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000626
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00213 SMART:SM00298
SMART:SM00490 dictyBase:DDB_G0293012 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0004003
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
EMBL:AAFI02000199 InterPro:IPR022617 Pfam:PF11976
RefSeq:XP_629261.1 ProteinModelPortal:Q54CF8
EnsemblProtists:DDB0220643 GeneID:8628981 KEGG:ddi:DDB_G0293012
InParanoid:Q54CF8 OMA:IMINEDI Uniprot:Q54CF8
Length = 3071
Score = 260 (96.6 bits), Expect = 1.5e-18, Sum P(3) = 1.5e-18
Identities = 106/407 (26%), Positives = 178/407 (43%)
Query: 196 YVKLYSWK-MGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKA 254
++ Y +K T + + +E ++S D S + + L + DEGH +ND + +
Sbjct: 986 FISKYEFKHKDTYLFEVLLTTYETIMS-DHSSFVRVPWRAL-ILDEGHRIKNDKSKVLSK 1043
Query: 255 LSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISS 314
L IKT IIL+GTP QN+ +EL L+ + + + ++ E S K S +S
Sbjct: 1044 LKSIKTEHSIILTGTPLQNDMKELWTMLNFLDPD---KFNSCQEFLDEYSDLKEESQVSK 1100
Query: 315 IGRCANHRDDXXXXXXXXXIAPFVNVHKGTVLQESLPGLRHSV--VILQPD-EFQKRLCK 371
+ + + + + + + TV+Q L + + IL+ + EF R
Sbjct: 1101 LHQLLS---PYLLRRMKEDVELSIPIKEETVIQVELSSTQKTYYRAILERNREFLSR--- 1154
Query: 372 AVEGVKSFVELNYCXXXXXXXXXXXXQQFFESFDVDS-AKLARLKLDPEAG---IKTRFL 427
G+K L F +S K ++ D E G +K+
Sbjct: 1155 ---GIKQKTNLPKLSNIMIQIRKVCNHPFLIPGAEESIVKQEKIAGDEELGELLVKSSSK 1211
Query: 428 LILLEL------STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKK 479
L+L++ + +VL+FSQ +E L ++ + L++R E Y +DG +
Sbjct: 1212 LVLVDKLLQRLKAEGHQVLIFSQMVESLNILEDYLQYR-------EYTYERLDGSIKSEV 1264
Query: 480 RQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLG 539
RQ+SI+ D + + L ST+A GINL A V+L D WNP + QA +R +R+G
Sbjct: 1265 RQASIDRFQDKGANRFVFLLSTRAGGVGINLTTADTVILFDSDWNPQSDLQAQARCHRIG 1324
Query: 540 QKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTT 586
Q V VY LIT T E +K+ ++V ++ TT
Sbjct: 1325 QTNNVKVYRLITRNTYEEYLFECATKKLLLDHIVLSTNKDKKQTNTT 1371
Score = 67 (28.6 bits), Expect = 1.5e-18, Sum P(3) = 1.5e-18
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCR-P-VIIAPRSMLLTWEEEFKKW 155
+++ G GKT ++ FLQ Y+ + P +++AP S L W +E KW
Sbjct: 920 LLADEMGLGKTIQSIAFLQ-YLSQSVGIKGPFLVVAPLSTLGNWHKEILKW 969
Score = 41 (19.5 bits), Expect = 1.5e-18, Sum P(3) = 1.5e-18
Identities = 17/73 (23%), Positives = 30/73 (41%)
Query: 558 DKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSETLINAIIPQ 617
+K ++Q+ + ++ SSDGGG T P + E Q T +N++
Sbjct: 1614 NKKKKQSNNILLADSD-SSSDGGGGSDTDFILPDDGDSYESDDQHVETLDNT-VNSLSNP 1671
Query: 618 PKETELIETFGEF 630
P + E +F
Sbjct: 1672 PLKQRKSEKKSQF 1684
>RGD|1311935 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1311935 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 OrthoDB:EOG4SXNBV GeneTree:ENSGT00670000098110
IPI:IPI00560655 Ensembl:ENSRNOT00000043937 UCSC:RGD:1311935
ArrayExpress:D4ACG6 Uniprot:D4ACG6
Length = 903
Score = 217 (81.4 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 83/340 (24%), Positives = 148/340 (43%)
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF--GEVLRTV 296
DE H +N + + + LS R++L+GTP QN+ QEL + LS+V + E +
Sbjct: 168 DEAHRLKNQSSLLHRTLSEFSVVFRLLLTGTPIQNSLQELYSLLSVVEPDLFCREQVEDF 227
Query: 297 RKSGREISK-AKHASLISSIGR-CANHRDDXXXXXXXXXIAPFVNVHKGTVLQESLPGLR 354
+ ++I K +K AS + + R R V H + LQ+
Sbjct: 228 VQCYQDIEKESKSASELHRLLRPFLLRRVKAQVATELPKKTEVVIYHGMSALQKKY---- 283
Query: 355 HSVVILQP-DEFQKRLCKAVEGVKSFVELNYCXXXXXXXXXXXXQQFFESFDVDSAKLAR 413
+ ++++ D F+ K V+ +L C F+ + + ++
Sbjct: 284 YKAILMKDLDAFENETAKKVKLQNVLTQLRKCVDH---------PYLFDGVEPEPFEVGE 334
Query: 414 LKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDG 473
++ + L+ S +VL+FSQ L ++ + + +R G +DG
Sbjct: 335 HLIEASGKLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYMDYR-----GYSYERVDG 389
Query: 474 KQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAIS 533
V+ + + + N + L ST+A G+NL A V+ +D +NP + QA +
Sbjct: 390 S--VRGEERHLAIKNFGKQPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAA 447
Query: 534 RAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
RA+R+GQ + V V LI +T+E R+ A K+ +NMV
Sbjct: 448 RAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMV 487
Score = 166 (63.5 bits), Expect = 6.1e-13, Sum P(2) = 6.1e-13
Identities = 59/213 (27%), Positives = 101/213 (47%)
Query: 419 EAGIKTRFL--LILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQD 476
EA K L L+ S +VL+FSQ L ++ + + +R G +DG
Sbjct: 338 EASGKLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYMDYR-----GYSYERVDGS-- 390
Query: 477 VKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAY 536
V+ + + + N + L ST+A G+NL A V+ +D +NP + QA +RA+
Sbjct: 391 VRGEERHLAIKNFGKQPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAH 450
Query: 537 RLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKIL 596
R+GQ + V V LI +T+E R+ A K+ +NMV GG+ A +P + L
Sbjct: 451 RIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMVIE----GGHFTLGAQKPAAEADL 506
Query: 597 EEMAQLYNNPSETLINAIIPQPKETELIETFGE 629
+ ++++ + L+++ E +L GE
Sbjct: 507 Q-LSEILKFGLDKLLSSEGSSMDEIDLKSILGE 538
Score = 91 (37.1 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYM--KLHPRCRPVIIAPRSMLLTWEEEFKKW--GI 157
G NGCI+ G GKT T+ L Y+ +L+ +I+ P S+L W+EE +++ G+
Sbjct: 57 GQNGCILGDEMGLGKTCQTIALL-IYLVGRLNDEGPFLILCPLSVLSNWKEEMERFAPGL 115
Query: 158 DIPFYNLNKPELSGKENN 175
Y +K E + ++ +
Sbjct: 116 SCVTYTGDKEERARRQQD 133
>UNIPROTKB|H3BTW3 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00384 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 EMBL:AC007906
EMBL:AC079416 HGNC:HGNC:25701 Ensembl:ENST00000565803 Bgee:H3BTW3
Uniprot:H3BTW3
Length = 1099
Score = 186 (70.5 bits), Expect = 1.8e-18, Sum P(3) = 1.8e-18
Identities = 53/163 (32%), Positives = 81/163 (49%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQAR 495
KVL+FSQ + L ++ + L H+ LY +DG+ RQ++I+ + P S
Sbjct: 726 KVLIFSQMVRCLDILEDYLIHK-------RYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 778
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
+ L T+A GINL A ++ D WNP + QA +R +R+GQ + V VY L+T +
Sbjct: 779 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSY 838
Query: 556 EWDKLRRQARKVWWSNMVFPSSDG-----GGNDQTTASEPLED 593
E + R + K+ V S G GG Q + E +ED
Sbjct: 839 EREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKE-IED 880
Score = 91 (37.1 bits), Expect = 1.8e-18, Sum P(3) = 1.8e-18
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW-GIDIPFYN 163
CI++ G GKT ++ FL + R +IIAP S + WE EF+ W I++ Y+
Sbjct: 407 CILADEMGLGKTIQSITFLYEILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYH 465
Score = 80 (33.2 bits), Expect = 1.8e-18, Sum P(3) = 1.8e-18
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 216 FEKLVSG-DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNN 274
FE ++ G EL+ I + DE H +N + + + L + +++L+GTP QN
Sbjct: 502 FEMILGGCGELNAIEWRC---VIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNT 558
Query: 275 FQELENTL 282
+EL + L
Sbjct: 559 VEELFSLL 566
Score = 43 (20.2 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 18/73 (24%), Positives = 34/73 (46%)
Query: 244 PRNDDTCMFKALSRIKTRRRI---ILSGTPFQNNFQELENTLSLVRQEFGEVLRTV---- 296
P++ D+ K S++K + +I I++ Q E + +S Q L+
Sbjct: 100 PKDKDSKKTKTCSKLKEKTKIGKLIITLGKKQKRKNESSDEISDAEQMPQHTLKDQDSQK 159
Query: 297 RKSGREISKAKHA 309
R+S R+I + K+A
Sbjct: 160 RRSNRQIKRKKYA 172
Score = 39 (18.8 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 270 PFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
P++++ EL+ + L + E E L+ R R + +
Sbjct: 330 PYEDSTWELKEDVDLAKIEEFEQLQASRPDTRRLDR 365
>UNIPROTKB|F1SDX0 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 KO:K10841 OMA:NGEMQIF GO:GO:0000303
EMBL:CT990602 EMBL:CT990615 RefSeq:XP_003483566.1
Ensembl:ENSSSCT00000011375 GeneID:100738583 KEGG:ssc:100738583
Uniprot:F1SDX0
Length = 1481
Score = 193 (73.0 bits), Expect = 1.8e-18, Sum P(3) = 1.8e-18
Identities = 50/137 (36%), Positives = 76/137 (55%)
Query: 437 EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI 496
++VL+FSQ + L ++ LR + L MDG + RQ I N+ +S +
Sbjct: 845 QRVLLFSQSRQMLDILEVFLR-----AQKYSYLKMDGTTTIASRQPLITRYNEDAS-IFV 898
Query: 497 MLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
L +T+ G+NL GA+RV++ D WNP + QA RA+R+GQK+ V VY L+T+ T+E
Sbjct: 899 FLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIE 958
Query: 557 WDKLRRQARKVWWSNMV 573
RQ K + +N V
Sbjct: 959 EKIYHRQIFKQFLTNRV 975
Score = 103 (41.3 bits), Expect = 1.8e-18, Sum P(3) = 1.8e-18
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
+ DEGH RN + + A + +T RIILSG+P QNN +EL
Sbjct: 633 ILDEGHKIRNPNAAITLACKQFRTPHRIILSGSPMQNNLREL 674
Score = 65 (27.9 bits), Expect = 1.8e-18, Sum P(3) = 1.8e-18
Identities = 27/99 (27%), Positives = 46/99 (46%)
Query: 62 VPRDVRKKMFPHQREGFEFIWK---NIAGGIDLDELKNSTSTGGGNGC-IISHAPGTGKT 117
+P + KK+F +Q+ G ++W+ AGGI DE+ G G II+ G +
Sbjct: 488 MPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEM------GLGKTIQIIAFLAGLSYS 541
Query: 118 GL-TLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155
+ T + L P +I+ P +++ W +EF W
Sbjct: 542 KIRTRGSNYRFEGLGPT---IIVCPTTVMHQWVKEFHTW 577
Score = 37 (18.1 bits), Expect = 1.3e-15, Sum P(3) = 1.3e-15
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 65 DVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNG 105
D R+++ H++ + ++I + + TGGG G
Sbjct: 394 DERRRVLSHRKRQKKVTVQDIDDDFFPSSGEEAEGTGGGGG 434
>UNIPROTKB|F1NAD2 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0000729 "DNA double-strand
break processing" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035861
"site of double-strand break" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0051304 "chromosome
separation" evidence=IEA] [GO:0070932 "histone H3 deacetylation"
evidence=IEA] [GO:0070933 "histone H4 deacetylation" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000018 GeneTree:ENSGT00630000089890
GO:GO:0051304 OMA:KNQRGIQ EMBL:AADN02016061 EMBL:AADN02016062
EMBL:AADN02016063 EMBL:AADN02016064 EMBL:AADN02016065
EMBL:AADN02016066 EMBL:AADN02016067 IPI:IPI00583150
Ensembl:ENSGALT00000016936 Uniprot:F1NAD2
Length = 963
Score = 167 (63.8 bits), Expect = 2.3e-18, Sum P(3) = 2.3e-18
Identities = 53/159 (33%), Positives = 85/159 (53%)
Query: 413 RLKLDP--EAGIKTRFLLILL-ELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEV 468
+L +D ++G K R L LL +L ++V++FSQ+ L ++ L+H W+
Sbjct: 781 KLDMDQILDSG-KFRVLERLLSDLKEKGDRVVLFSQFTMVLDILEVFLKH---WQH--RY 834
Query: 469 LYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVE 528
+ +DGK + R I+ N + L STKA GINL A+ V+L D+ NP+ +
Sbjct: 835 IRLDGKTQISDRIHLIDEFNT-DMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYND 893
Query: 529 RQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567
+QA R +R+GQ R V V LI+ T+E L+ +K+
Sbjct: 894 KQAEDRCHRVGQTREVKVIKLISKGTIEESMLKMNQQKL 932
Score = 121 (47.7 bits), Expect = 2.3e-18, Sum P(3) = 2.3e-18
Identities = 43/150 (28%), Positives = 70/150 (46%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGEVLRT 295
+FDEGH +N + ++ L RI + R++L+GTP QNN EL + L+ V F
Sbjct: 563 IFDEGHMLKNMSSVRYQQLMRINAKHRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSE 622
Query: 296 VRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPFVNVH-KGTVLQESLPGLR 354
+R+ SKAK A S+ + I PF+ K VL++ LP +
Sbjct: 623 IRRMFS--SKAKTAEEQSTY-------EKERIAHAKQIIKPFILRRVKDEVLKQ-LPPKK 672
Query: 355 HSVVILQPDEFQKRL-CKAVEGVKSFVELN 383
+ + E Q++L C + +K ++ N
Sbjct: 673 DHIELCAMSEKQEQLYCDLLNKLKKTMKGN 702
Score = 67 (28.6 bits), Expect = 2.3e-18, Sum P(3) = 2.3e-18
Identities = 21/69 (30%), Positives = 31/69 (44%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW--GIDI 159
G NG I++ G GKT + FL + R +I+ P S L W E W +++
Sbjct: 451 GLNG-ILADEMGLGKTIQAIAFLAHIYQEGDRGPHLIVVPASTLDNWIREVNLWCPELNV 509
Query: 160 PFYNLNKPE 168
FY + E
Sbjct: 510 LFYYVGSQE 518
>ASPGD|ASPL0000037473 [details] [associations]
symbol:AN2973 species:162425 "Emericella nidulans"
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0070870 "heterochromatin maintenance involved in chromatin
silencing" evidence=IEA] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0070869 "heterochromatin
assembly involved in chromatin silencing" evidence=IEA] [GO:0006348
"chromatin silencing at telomere" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031934 "mating-type region heterochromatin" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775 "chromosome,
centromeric region" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 EMBL:BN001306 EMBL:AACD01000051
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 OrthoDB:EOG4BCHW4 KO:K14439 HOGENOM:HOG000195581
RefSeq:XP_660577.1 ProteinModelPortal:Q5B907
EnsemblFungi:CADANIAT00010107 GeneID:2874181 KEGG:ani:AN2973.2
OMA:QQVGINW Uniprot:Q5B907
Length = 1107
Score = 170 (64.9 bits), Expect = 2.4e-18, Sum P(4) = 2.4e-18
Identities = 54/185 (29%), Positives = 97/185 (52%)
Query: 419 EAGIKTRFLLILLELSTN-EKVLVFSQY---IEPLTLIMEQLRHRFNWREGQEVLYMDGK 474
++G + +L N ++VLVFSQ+ ++ L +++E +F + +DG
Sbjct: 924 DSGKVDKLCELLRRFKENGDRVLVFSQFRLAMDILEVVLENQHLKF--------VRLDGT 975
Query: 475 QDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISR 534
V+ RQS ++ ++ ++ + L STKA GINL A++V++ D +NP + QA +R
Sbjct: 976 TSVEDRQSIMDTFHE-NTDIPVFLLSTKAGGAGINLACANKVIIFDSSFNPQEDVQAENR 1034
Query: 535 AYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDK 594
A+R+GQ R V V L+T +T+E +++ + + DG + + SE K
Sbjct: 1035 AHRVGQTREVEVIRLVTKDTIE-EQIYALGQTKLALDQAVAGEDGADSKK---SEEAGIK 1090
Query: 595 ILEEM 599
+EEM
Sbjct: 1091 AVEEM 1095
Score = 124 (48.7 bits), Expect = 2.4e-18, Sum P(4) = 2.4e-18
Identities = 27/82 (32%), Positives = 49/82 (59%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR----QEFGEV 292
V+DEGH ++ + +++ L RI+ R R++L+GTP QNN QEL + L + QE +
Sbjct: 692 VYDEGHMLKSSTSVLYEKLIRIRARFRLLLTGTPLQNNLQELASLLGFILPKVFQERKDD 751
Query: 293 LRTVRKSGREISKAKHASLISS 314
L+ + + + H++L+S+
Sbjct: 752 LQYIFSNKAKTVDESHSALLSA 773
Score = 64 (27.6 bits), Expect = 2.4e-18, Sum P(4) = 2.4e-18
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155
CI++ G GKT + FL + + +++ P S + W EF+K+
Sbjct: 585 CILADDMGLGKTCQVIAFLAHLYEKGIKGPHLVVVPSSTIENWLREFQKF 634
Score = 45 (20.9 bits), Expect = 1.9e-16, Sum P(4) = 1.9e-16
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 151 EFKKWGIDI 159
E KKWG+DI
Sbjct: 496 EMKKWGVDI 504
Score = 41 (19.5 bits), Expect = 2.4e-18, Sum P(4) = 2.4e-18
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 39 DSGFDSQTGCDPFTHAQG 56
DS FD+Q G D T G
Sbjct: 383 DSAFDAQDGADLETKVLG 400
Score = 41 (19.5 bits), Expect = 5.5e-08, Sum P(2) = 5.5e-08
Identities = 17/75 (22%), Positives = 31/75 (41%)
Query: 309 ASLISSIGRCANHRDDXXXXXXXXXIAPFV-NVH-KGTVLQE-SLPGLRHSVVILQPDEF 365
AS G + D+ +AP N+ +G + + + P L S + QP+E
Sbjct: 262 ASTEDQNGHADSSEDELSTIKKTSPVAPAKQNIKARGRIQDKWTAPNLPKSTLQKQPEED 321
Query: 366 QKRLCKAVEGVKSFV 380
+ + + G K+ V
Sbjct: 322 SRPRKRLIRGPKTRV 336
Score = 39 (18.8 bits), Expect = 7.4e-10, Sum P(4) = 7.4e-10
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 343 GTVLQESLPGLRHSVVILQPDEFQKR 368
GT LQ +L L + + P FQ+R
Sbjct: 723 GTPLQNNLQELASLLGFILPKVFQER 748
Score = 37 (18.1 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 69 KMFPHQREGFEFIWKNIAGGID 90
K+F +++ ++I+ N A +D
Sbjct: 743 KVFQERKDDLQYIFSNKAKTVD 764
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 185 (70.2 bits), Expect = 2.4e-18, Sum P(4) = 2.4e-18
Identities = 49/131 (37%), Positives = 72/131 (54%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQD------------VKKRQSSIN 485
+VL+FSQ +T +++ L WR G E +DG+ ++R+ +I
Sbjct: 507 RVLIFSQ----MTRLLDILEDYCMWR-GYEYCRLDGQTPHEERENGFLQIYFRRRREAIE 561
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
N P+S I + ST+A GINL A V+L D WNP V+ QA+ RA+R+GQK+ V
Sbjct: 562 AFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVR 621
Query: 546 VYHLITSETLE 556
V+ LIT T+E
Sbjct: 622 VFRLITDNTVE 632
Score = 89 (36.4 bits), Expect = 2.4e-18, Sum P(4) = 2.4e-18
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
V DE H +N+ + + + + K+ R++L+GTP QNN EL
Sbjct: 312 VIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHEL 353
Score = 86 (35.3 bits), Expect = 2.4e-18, Sum P(4) = 2.4e-18
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP---VIIAPRSMLLTWEEEFKKW 155
G NG I++ G GKT T+ L Y+K H R P +++ P+S L W EFK+W
Sbjct: 204 GVNG-ILADEMGLGKTLQTIALL-GYLK-HYRNIPGPHMVLVPKSTLHNWMNEFKRW 257
Score = 50 (22.7 bits), Expect = 0.00028, Sum P(4) = 0.00028
Identities = 22/82 (26%), Positives = 34/82 (41%)
Query: 524 NPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS---NMVFPSSDGG 580
NP + A+ A R QK++ L ET E +KL Q W N +++
Sbjct: 821 NPDIPNPAV--AQREEQKKIDGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKY 878
Query: 581 GNDQT-TASEPLEDKILEEMAQ 601
G D + +E K EE+ +
Sbjct: 879 GRDDIDNIAREVEGKSPEEVME 900
Score = 37 (18.1 bits), Expect = 2.4e-18, Sum P(4) = 2.4e-18
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 296 VRKSGREISKAKHASLISSIGRCANH 321
V S ++ K + +++ + +C NH
Sbjct: 440 VLNSAGKMDKMRLLNILMQLRKCCNH 465
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 184 (69.8 bits), Expect = 2.6e-18, Sum P(4) = 2.6e-18
Identities = 49/131 (37%), Positives = 73/131 (55%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQS------------SIN 485
+VL+FSQ +T +++ L WR G E +DG+ ++R++ +I
Sbjct: 484 RVLIFSQ----MTRLLDILEDYCMWR-GYEYCRLDGQTPHEERENLFLHKHNLFSTEAIE 538
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
N P+S I + ST+A GINL A V+L D WNP V+ QA+ RA+R+GQK+ V
Sbjct: 539 AFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVR 598
Query: 546 VYHLITSETLE 556
V+ LIT T+E
Sbjct: 599 VFRLITDNTVE 609
Score = 89 (36.4 bits), Expect = 2.6e-18, Sum P(4) = 2.6e-18
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
V DE H +N+ + + + + K+ R++L+GTP QNN EL
Sbjct: 289 VIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHEL 330
Score = 86 (35.3 bits), Expect = 2.6e-18, Sum P(4) = 2.6e-18
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP---VIIAPRSMLLTWEEEFKKW 155
G NG I++ G GKT T+ L Y+K H R P +++ P+S L W EFK+W
Sbjct: 181 GVNG-ILADEMGLGKTLQTIALL-GYLK-HYRNFPGPHMVLVPKSTLHNWMNEFKRW 234
Score = 50 (22.7 bits), Expect = 0.00024, Sum P(4) = 0.00024
Identities = 23/82 (28%), Positives = 34/82 (41%)
Query: 524 NPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS---NMVFPSSDGG 580
NP + AI A R QK++ L E+ E DKL Q W N +++
Sbjct: 798 NPELPNPAI--AQREEQKKIDGAEPLTPQESEEKDKLLTQGFTNWTKRDFNQFIKANEKY 855
Query: 581 GNDQT-TASEPLEDKILEEMAQ 601
G D + +E K EE+ +
Sbjct: 856 GRDDIDNVAREVEGKSPEEVME 877
Score = 37 (18.1 bits), Expect = 2.6e-18, Sum P(4) = 2.6e-18
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 296 VRKSGREISKAKHASLISSIGRCANH 321
V S ++ K + +++ + +C NH
Sbjct: 417 VLNSSGKMDKMRLLNILMQLRKCCNH 442
>POMBASE|SPBC23E6.02 [details] [associations]
symbol:rrp2 "ATP-dependent DNA helicase (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IGI]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISM] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISM] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISM] [GO:0016567 "protein
ubiquitination" evidence=ISM] [GO:0045005 "maintenance of fidelity
involved in DNA-dependent DNA replication" evidence=IMP]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00490 PomBase:SPBC23E6.02 Prosite:PS00518
GO:GO:0005524 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GO:GO:0006338 GO:GO:0000790 Gene3D:3.30.40.10
InterPro:IPR013083 GO:GO:0004003 GO:GO:0000724 GO:GO:0004842
InterPro:IPR017907 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0045005
OrthoDB:EOG4NZZ2M PIR:T39936 RefSeq:NP_596602.1
ProteinModelPortal:O60177 STRING:O60177 EnsemblFungi:SPBC23E6.02.1
GeneID:2540464 KEGG:spo:SPBC23E6.02 OMA:ACCHSYL NextBio:20801591
Uniprot:O60177
Length = 1040
Score = 218 (81.8 bits), Expect = 2.7e-18, Sum P(3) = 2.7e-18
Identities = 48/138 (34%), Positives = 82/138 (59%)
Query: 430 LLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG-QEVLYMDGKQDVKKRQSSINVLN 488
+++ +K+L+FSQ++ L L R +EG + ++Y G ++ Q+ IN
Sbjct: 877 IIKKQPTDKILIFSQFVSFLELFTVPFR-----QEGIKYLMYTGGLSTAERNQALINFEV 931
Query: 489 DPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYH 548
DP+ R++L S KA G+NL A+ V++LD WNP++E QA+ RA+R+GQ + V++
Sbjct: 932 DPN--VRVLLISLKAGNVGLNLTCANHVIILDPFWNPYIEEQAVDRAHRIGQDKPVNILR 989
Query: 549 LITSETLEWDKLRRQARK 566
++T+ T+E L Q RK
Sbjct: 990 IVTNNTIEERVLALQDRK 1007
Score = 73 (30.8 bits), Expect = 2.7e-18, Sum P(3) = 2.7e-18
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR 286
+ DE T +N +T + +++ R LSGTP QN +E + + +R
Sbjct: 537 ILDEAQTIKNRNTLAARGCCLLESTYRWCLSGTPMQNGVEEFYSLIKFLR 586
Score = 61 (26.5 bits), Expect = 2.7e-18, Sum P(3) = 2.7e-18
Identities = 27/96 (28%), Positives = 39/96 (40%)
Query: 57 TVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGK 116
T+ E P + + HQ+EG +W L L+ S+ GG I++ G GK
Sbjct: 377 TIREGTPAGLIPTLMEHQKEGL--MW--------LKRLEESSKKGG----ILADDMGLGK 422
Query: 117 TGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEE 151
T L L + +II P S+L W E
Sbjct: 423 TVQALALLVTRPPESKSVKTTLIITPVSLLQQWHNE 458
Score = 39 (18.8 bits), Expect = 8.2e-15, Sum P(3) = 8.2e-15
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREI-SKAKHASLISSIGRCAN 320
+N EN L+ +++ +L R+ G +I + KH + + I + N
Sbjct: 825 DNKLRTENISELLPKQYSNILEN-RQMGMKIFTDPKHWTTSTKIEKALN 872
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 183 (69.5 bits), Expect = 2.8e-18, Sum P(4) = 2.8e-18
Identities = 49/131 (37%), Positives = 72/131 (54%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQS------------SIN 485
+VL+FSQ +T +++ L WR G E +DG+ ++R+ +I
Sbjct: 483 RVLIFSQ----MTRLLDILEDYCMWR-GYEYCRLDGQTPHEEREDKFLEVEFLGQREAIE 537
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
N P+S I + ST+A GINL A V+L D WNP V+ QA+ RA+R+GQK+ V
Sbjct: 538 AFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVR 597
Query: 546 VYHLITSETLE 556
V+ LIT T+E
Sbjct: 598 VFRLITDNTVE 608
Score = 89 (36.4 bits), Expect = 2.8e-18, Sum P(4) = 2.8e-18
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
V DE H +N+ + + + + K+ R++L+GTP QNN EL
Sbjct: 288 VIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHEL 329
Score = 86 (35.3 bits), Expect = 2.8e-18, Sum P(4) = 2.8e-18
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP---VIIAPRSMLLTWEEEFKKW 155
G NG I++ G GKT T+ L Y+K H R P +++ P+S L W EFK+W
Sbjct: 180 GVNG-ILADEMGLGKTLQTIALL-GYLK-HYRNIPGPHMVLVPKSTLHNWMNEFKRW 233
Score = 49 (22.3 bits), Expect = 0.00027, Sum P(4) = 0.00027
Identities = 22/82 (26%), Positives = 34/82 (41%)
Query: 524 NPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS---NMVFPSSDGG 580
NP + A+ A R QK++ L ET E +KL Q W N +++
Sbjct: 797 NPDIPNPAL--AQREEQKKIDGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKY 854
Query: 581 GNDQT-TASEPLEDKILEEMAQ 601
G D + +E K EE+ +
Sbjct: 855 GRDDIDNIAREVEGKSPEEVME 876
Score = 37 (18.1 bits), Expect = 2.8e-18, Sum P(4) = 2.8e-18
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 296 VRKSGREISKAKHASLISSIGRCANH 321
V S ++ K + +++ + +C NH
Sbjct: 416 VLNSSGKMDKMRLLNILMQLRKCCNH 441
>UNIPROTKB|H0YJG4 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135744 EMBL:AL161747
HGNC:HGNC:20153 Ensembl:ENST00000555935 Uniprot:H0YJG4
Length = 873
Score = 180 (68.4 bits), Expect = 3.3e-18, Sum P(3) = 3.3e-18
Identities = 52/165 (31%), Positives = 81/165 (49%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQAR 495
KVL+FSQ + L ++ + L R LY +DG+ RQ++I+ + P S
Sbjct: 377 KVLIFSQMVRCLDILEDYLIQR-------RYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 429
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
+ L T+A GINL A ++ D WNP + QA +R +R+GQ + V VY LIT +
Sbjct: 430 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSY 489
Query: 556 EWDKLRRQARKVWWSNMVFPSSDG-GGNDQTTASEPLEDKILEEM 599
E + + + K+ V S G GN T + K +E++
Sbjct: 490 EREMFDKASLKLGLDKAVLQSMSGRDGN--ITGIQQFSKKEIEDL 532
Score = 87 (35.7 bits), Expect = 3.3e-18, Sum P(3) = 3.3e-18
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155
CI++ G GKT ++ FLQ + ++IAP S + WE EF W
Sbjct: 58 CILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTW 107
Score = 84 (34.6 bits), Expect = 3.3e-18, Sum P(3) = 3.3e-18
Identities = 25/97 (25%), Positives = 49/97 (50%)
Query: 193 LIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGL-------FVFDEGHTPR 245
+I+ ++Y ++ +Y+ F+ L++ E+ IL D P L + DE H +
Sbjct: 124 MIQQYEMYCKDSRGRLIPGAYK-FDALITTFEM--ILSDCPELREIEWRCVIIDEAHRLK 180
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
N + + +L + +++L+GTP QN +EL + L
Sbjct: 181 NRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLL 217
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 201 (75.8 bits), Expect = 3.5e-18, Sum P(3) = 3.5e-18
Identities = 64/194 (32%), Positives = 97/194 (50%)
Query: 415 KLDPEAGIKT-RFLLI---LLELSTN-EKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEV 468
K+D E + +FL++ L EL T KVL+FSQ L ++M+ R FN+
Sbjct: 567 KVDEELVTNSGKFLILDRMLPELKTRGHKVLLFSQMTRMLDILMDYCHFRNFNFSR---- 622
Query: 469 LYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFV 527
+DG +R+ +I+ N DP I L ST+A GINL A V++ D WNP
Sbjct: 623 --LDGSMSYSEREKNIHSFNTDPD--VFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQS 678
Query: 528 ERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD--GGGNDQT 585
+ QA R +R+GQ R V VY L+T+ T++ + R A K ++ + GG +
Sbjct: 679 DLQAQDRCHRIGQTRPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLN 738
Query: 586 TASEPLEDKILEEM 599
+ L+ K L E+
Sbjct: 739 QSKNFLDPKELMEL 752
Score = 92 (37.4 bits), Expect = 3.5e-18, Sum P(3) = 3.5e-18
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRT 295
+ DEGH +N + + L R +++L+GTP QNN EL + L+ + + + L++
Sbjct: 330 IVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKS 388
Score = 55 (24.4 bits), Expect = 3.5e-18, Sum P(3) = 3.5e-18
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA-PRSMLLTWEEEFKKWGIDIP 160
G NG I++ G GKT + + A M P ++ P S L W EFK++ +IP
Sbjct: 219 GING-ILADEMGLGKTVQCIATI-ALMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPEIP 276
Score = 45 (20.9 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 21 WREYNNVDPSFLDDLNSRDSGFD 43
W N + P DDL S +S FD
Sbjct: 372 WSLLNFLLPDVFDDLKSFESWFD 394
Score = 41 (19.5 bits), Expect = 9.4e-17, Sum P(3) = 9.4e-17
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 73 HQREGFEFI---WKNIAGGIDLDEL 94
+Q EG E++ W+N GI DE+
Sbjct: 204 YQVEGMEWLRMLWENGINGILADEM 228
Score = 37 (18.1 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 14 SPSRRAEWREYNNVDPSFLDD 34
SP+ R + R +VD S +DD
Sbjct: 481 SPTGRPKRRTRKSVDYSKIDD 501
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 197 (74.4 bits), Expect = 3.5e-18, Sum P(3) = 3.5e-18
Identities = 53/162 (32%), Positives = 84/162 (51%)
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
+ +VL+FSQ L ++ + L +R G + +DG +R +SI N P S+
Sbjct: 511 DSRVLIFSQMTRLLDILEDYLMYR-----GYQYCRIDGNTGGDERDASIEAYNKPGSEKF 565
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
+ L ST+A GINL A V+L D WNP V+ QA RA+R+GQK+ V V+ T +
Sbjct: 566 VFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAI 625
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILE 597
E + R +K+ +V G +Q T ++ D++L+
Sbjct: 626 EAKVIERAYKKLALDALVI--QQGRLAEQKTVNK---DELLQ 662
Score = 94 (38.1 bits), Expect = 3.5e-18, Sum P(3) = 3.5e-18
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE 288
+ DE H +N+++ + K + T R++++GTP QNN EL L+ + E
Sbjct: 320 IIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPE 371
Score = 62 (26.9 bits), Expect = 3.5e-18, Sum P(3) = 3.5e-18
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR-P-VIIAPRSMLLTWEEEFKKW 155
G NG I++ G GKT L + L AY+ + P +++AP+S L W E +++
Sbjct: 212 GING-ILADEMGLGKT-LQTISLLAYLHEYRGINGPHMVVAPKSTLGNWMNEIRRF 265
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 196 (74.1 bits), Expect = 3.5e-18, Sum P(3) = 3.5e-18
Identities = 58/197 (29%), Positives = 94/197 (47%)
Query: 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
T K L+F Q + +T++ + LR + NW+ L +DG R S + NDP S
Sbjct: 1202 TGHKTLMFFQMTQIMTIMEDYLRSK-NWK----YLRLDGSTKSDDRCSLLAQFNDPKSDV 1256
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
I + ST+A G+NL A V++ D WNP + QA RA+R+GQ + V + LIT ++
Sbjct: 1257 YIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRLITEKS 1316
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSETLINAI 614
+E + L R K+ V + G ++++T E + L + + + L
Sbjct: 1317 IEENILSRAQYKLDLDGKVIQA--GKFDNKSTPEE--REAFLRSLLEHDGDDDHDLTYGE 1372
Query: 615 IPQPKETELIETFGEFL 631
+ + ELI E L
Sbjct: 1373 LQDDELNELISRTDEEL 1389
Score = 87 (35.7 bits), Expect = 3.5e-18, Sum P(3) = 3.5e-18
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 237 VFDEGHTPRNDDTCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLV 285
+ DEGH +N + + LS ++ R+IL+GTP QNN EL L+ V
Sbjct: 994 IIDEGHRIKNTQSKLTSTLSTYYHSQYRLILTGTPLQNNLPELWALLNFV 1043
Score = 77 (32.2 bits), Expect = 3.5e-18, Sum P(3) = 3.5e-18
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKW 155
NG I++ G GKT T+ F+ ++ + P +II P S L W EF+KW
Sbjct: 889 NG-ILADEMGLGKTIQTIAFITYLIEKKNQQGPFLIIVPLSTLTNWIMEFEKW 940
Score = 44 (20.5 bits), Expect = 8.5e-14, Sum P(3) = 8.5e-14
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 255 LSRIKTRRRIILSGTPFQNNFQELENTLS 283
LSRIK II G +N +L +TLS
Sbjct: 985 LSRIKWVHMIIDEGHRIKNTQSKLTSTLS 1013
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 183 (69.5 bits), Expect = 3.6e-18, Sum P(4) = 3.6e-18
Identities = 49/131 (37%), Positives = 72/131 (54%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQS------------SIN 485
+VL+FSQ +T +++ L WR G E +DG+ ++R+ +I
Sbjct: 504 RVLIFSQ----MTRLLDILEDYCMWR-GYEYCRLDGQTPHEEREDKFLEVEFLGQREAIE 558
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
N P+S I + ST+A GINL A V+L D WNP V+ QA+ RA+R+GQK+ V
Sbjct: 559 AFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVR 618
Query: 546 VYHLITSETLE 556
V+ LIT T+E
Sbjct: 619 VFRLITDNTVE 629
Score = 89 (36.4 bits), Expect = 3.6e-18, Sum P(4) = 3.6e-18
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
V DE H +N+ + + + + K+ R++L+GTP QNN EL
Sbjct: 309 VIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHEL 350
Score = 86 (35.3 bits), Expect = 3.6e-18, Sum P(4) = 3.6e-18
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP---VIIAPRSMLLTWEEEFKKW 155
G NG I++ G GKT T+ L Y+K H R P +++ P+S L W EFK+W
Sbjct: 201 GVNG-ILADEMGLGKTLQTIALL-GYLK-HYRNIPGPHMVLVPKSTLHNWMNEFKRW 254
Score = 49 (22.3 bits), Expect = 0.00032, Sum P(4) = 0.00032
Identities = 22/82 (26%), Positives = 34/82 (41%)
Query: 524 NPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS---NMVFPSSDGG 580
NP + A+ A R QK++ L ET E +KL Q W N +++
Sbjct: 818 NPDIPNPAL--AQREEQKKIDGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKY 875
Query: 581 GNDQT-TASEPLEDKILEEMAQ 601
G D + +E K EE+ +
Sbjct: 876 GRDDIDNIAREVEGKSPEEVME 897
Score = 37 (18.1 bits), Expect = 3.6e-18, Sum P(4) = 3.6e-18
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 296 VRKSGREISKAKHASLISSIGRCANH 321
V S ++ K + +++ + +C NH
Sbjct: 437 VLNSSGKMDKMRLLNILMQLRKCCNH 462
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 167 (63.8 bits), Expect = 4.5e-18, Sum P(3) = 4.5e-18
Identities = 59/213 (27%), Positives = 101/213 (47%)
Query: 419 EAGIKTRFL--LILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQD 476
EA K L L+ S +VL+FSQ + L ++ + + +R G +DG
Sbjct: 344 EASGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYR-----GYSYERVDGS-- 396
Query: 477 VKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAY 536
V+ + + + N + L ST+A G+NL A V+ +D +NP + QA +RA+
Sbjct: 397 VRGEERHLAIKNFGQQPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAH 456
Query: 537 RLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKIL 596
R+GQ + V V LI +T+E R+ A K+ +NM+ GG+ A +P D L
Sbjct: 457 RIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIE----GGHFTLGAQKPAADADL 512
Query: 597 EEMAQLYNNPSETLINAIIPQPKETELIETFGE 629
+ ++++ + L+ + E +L GE
Sbjct: 513 Q-LSEILKFGLDKLLASEGSTMDEIDLESILGE 544
Score = 100 (40.3 bits), Expect = 4.5e-18, Sum P(3) = 4.5e-18
Identities = 26/88 (29%), Positives = 43/88 (48%)
Query: 226 SGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
+ L P + V DE H +N + + K LS ++L+GTP QN+ QEL + LS
Sbjct: 160 ASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLLSF 219
Query: 285 V------RQEFGEVLRTVRKSGREISKA 306
V ++E G+ ++ + +E A
Sbjct: 220 VEPDLFSKEEVGDFIQRYQDIEKESESA 247
Score = 84 (34.6 bits), Expect = 4.5e-18, Sum P(3) = 4.5e-18
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 104 NGCIISHAPGTGKTGLTL-VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW--GIDIP 160
NGCI+ G GKT T+ +F+ +L+ +I+ P S+L W+EE +++ G+
Sbjct: 65 NGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPLSVLSNWKEEMQRFAPGLSCV 124
Query: 161 FYNLNKPE 168
Y +K E
Sbjct: 125 TYAGDKEE 132
Score = 46 (21.3 bits), Expect = 2.0e-05, Sum P(3) = 2.0e-05
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 551 TSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQ 584
T + ++ + + + + W + P+++GG DQ
Sbjct: 532 TMDEIDLESILGETKDGQWVSDALPAAEGGSRDQ 565
Score = 43 (20.2 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 343 GTVLQESLPGLRHSVVILQPDEFQK 367
GT +Q SL L + ++PD F K
Sbjct: 203 GTPIQNSLQELYSLLSFVEPDLFSK 227
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 182 (69.1 bits), Expect = 4.8e-18, Sum P(4) = 4.8e-18
Identities = 49/131 (37%), Positives = 72/131 (54%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQS------------SIN 485
+VL+FSQ +T +++ L WR G E +DG+ ++R+ +I
Sbjct: 507 RVLIFSQ----MTRLLDILEDYCMWR-GYEYCRLDGQTPHEEREDKFLEVELLGQREAIE 561
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
N P+S I + ST+A GINL A V+L D WNP V+ QA+ RA+R+GQK+ V
Sbjct: 562 AFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVR 621
Query: 546 VYHLITSETLE 556
V+ LIT T+E
Sbjct: 622 VFRLITDNTVE 632
Score = 89 (36.4 bits), Expect = 4.8e-18, Sum P(4) = 4.8e-18
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
V DE H +N+ + + + + K+ R++L+GTP QNN EL
Sbjct: 312 VIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHEL 353
Score = 86 (35.3 bits), Expect = 4.8e-18, Sum P(4) = 4.8e-18
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP---VIIAPRSMLLTWEEEFKKW 155
G NG I++ G GKT T+ L Y+K H R P +++ P+S L W EFK+W
Sbjct: 204 GVNG-ILADEMGLGKTLQTIALL-GYLK-HYRNIPGPHMVLVPKSTLHNWMNEFKRW 257
Score = 50 (22.7 bits), Expect = 0.00026, Sum P(4) = 0.00026
Identities = 22/82 (26%), Positives = 34/82 (41%)
Query: 524 NPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS---NMVFPSSDGG 580
NP + A+ A R QK++ L ET E +KL Q W N +++
Sbjct: 821 NPDIPNPAV--AQREEQKKIDGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKY 878
Query: 581 GNDQT-TASEPLEDKILEEMAQ 601
G D + +E K EE+ +
Sbjct: 879 GRDDIDNIAREVEGKSPEEVME 900
Score = 37 (18.1 bits), Expect = 4.8e-18, Sum P(4) = 4.8e-18
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 296 VRKSGREISKAKHASLISSIGRCANH 321
V S ++ K + +++ + +C NH
Sbjct: 440 VLNSAGKMDKMRLLNILMQLRKCCNH 465
>UNIPROTKB|F1NSG3 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008015 "blood circulation" evidence=IEA] [GO:0021545 "cranial
nerve development" evidence=IEA] [GO:0030217 "T cell
differentiation" evidence=IEA] [GO:0030540 "female genitalia
development" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] [GO:0043584 "nose
development" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0050890 "cognition" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0060041 "retina development
in camera-type eye" evidence=IEA] [GO:0060123 "regulation of growth
hormone secretion" evidence=IEA] [GO:0060324 "face development"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003007 "heart morphogenesis" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0040018 GO:GO:0003682
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 IPI:IPI00590082
OMA:TFGVIFD GO:GO:0060123 GeneTree:ENSGT00560000077077
EMBL:AADN02022009 EMBL:AADN02022010 Ensembl:ENSGALT00000024950
ArrayExpress:F1NSG3 Uniprot:F1NSG3
Length = 2248
Score = 188 (71.2 bits), Expect = 5.1e-18, Sum P(3) = 5.1e-18
Identities = 58/203 (28%), Positives = 96/203 (47%)
Query: 398 QQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQL 456
++F E+ + DS + AG +L +L +VL+FSQ + L ++ + L
Sbjct: 505 EEFKETHNADSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYL 564
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
R R E + DG+ RQ++I+ + P S + L T+A GINL A
Sbjct: 565 IQR---RYPYERI--DGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTC 619
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPS 576
++ D WNP + QA +R +R+GQ + V +Y LIT + E + + + K+ V S
Sbjct: 620 IIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQS 679
Query: 577 SDGGGNDQTTASEPLEDKILEEM 599
G N T + L K +E++
Sbjct: 680 MSGREN-ATNGVQQLSKKEIEDL 701
Score = 88 (36.0 bits), Expect = 5.1e-18, Sum P(3) = 5.1e-18
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 106 CIISHAPGTGKTGLTLVFL-QAYMK-LHPRCRPVIIAPRSMLLTWEEEFKKW 155
CI++ G GKT ++ FL + Y+K +H ++IAP S + WE EF+ W
Sbjct: 227 CILADEMGLGKTIQSITFLYEIYLKGIHGPF--LVIAPLSTIPNWEREFRTW 276
Score = 87 (35.7 bits), Expect = 5.1e-18, Sum P(3) = 5.1e-18
Identities = 29/98 (29%), Positives = 50/98 (51%)
Query: 195 RYVKLYS--WKMGTG-ILGLSYRLFEKLVSGDELSGILLDLPGL-------FVFDEGHTP 244
R ++LY +K G ++ SY+ F +++ E+ IL D P L V DE H
Sbjct: 292 RTIQLYEMYFKDPQGRVIKGSYK-FHAIITTFEM--ILTDCPELRNIPWRCVVIDEAHRL 348
Query: 245 RNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
+N + + + L + +++L+GTP QN +EL + L
Sbjct: 349 KNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLL 386
Score = 54 (24.1 bits), Expect = 0.00049, Sum P(3) = 0.00049
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 442 FSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQD 476
F + + +I + ++H+F+W + + +D K D
Sbjct: 1211 FYRVVSTFGIIFDPIKHQFDWNQFRAFARLDKKSD 1245
Score = 42 (19.8 bits), Expect = 2.0e-13, Sum P(3) = 2.0e-13
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 357 VVILQPDEFQKRLCKAVEGVK 377
VVI + + R CK +EG+K
Sbjct: 340 VVIDEAHRLKNRNCKLLEGLK 360
>POMBASE|SPAC17A2.12 [details] [associations]
symbol:rrp1 "ATP-dependent DNA helicase (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IGI]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISM] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=ISM] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=ISM]
[GO:0016567 "protein ubiquitination" evidence=ISM] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0045005
"maintenance of fidelity involved in DNA-dependent DNA replication"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50089
PROSITE:PS51194 SMART:SM00184 SMART:SM00490 PomBase:SPAC17A2.12
Prosite:PS00518 GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006338
GO:GO:0000790 Gene3D:3.30.40.10 InterPro:IPR013083 GO:GO:0004003
GO:GO:0000724 GO:GO:0004842 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0035861 GO:GO:0045005 OrthoDB:EOG4NZZ2M PIR:T37813
RefSeq:NP_594246.1 ProteinModelPortal:O13762 STRING:O13762
EnsemblFungi:SPAC17A2.12.1 GeneID:2542440 KEGG:spo:SPAC17A2.12
OMA:RIRDSEN NextBio:20803497 Uniprot:O13762
Length = 897
Score = 203 (76.5 bits), Expect = 5.1e-18, Sum P(2) = 5.1e-18
Identities = 50/130 (38%), Positives = 75/130 (57%)
Query: 427 LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINV 486
+L ++ NEK+LV+SQ+ + L L+ L+ N R V Y DG +RQ S++
Sbjct: 732 ILDIIGSKRNEKILVYSQFSQYLCLVSHMLKLE-NIRH---VRY-DGTMSANQRQKSLHS 786
Query: 487 LNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHV 546
N+ +ML S KA G+NL A+ V+L + +NP +E QAI R +RLGQ++ V V
Sbjct: 787 FNN-DKDVLVMLVSLKAGSVGLNLTIANHVILQEPFYNPSIEDQAIDRVHRLGQQKPVTV 845
Query: 547 YHLITSETLE 556
Y IT +T+E
Sbjct: 846 YRFITKDTIE 855
Score = 101 (40.6 bits), Expect = 5.1e-18, Sum P(2) = 5.1e-18
Identities = 51/206 (24%), Positives = 85/206 (41%)
Query: 85 IAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP-RCRPVIIAPRS 143
+ G ++ ++ S+ GG +++ G GKT T+ L P R +I+ +
Sbjct: 255 VEGHAWMESMEQSSKCGG----VMADDMGLGKTIQTIALLLTQKSQDPLRKTNLIVVSVA 310
Query: 144 MLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL-MDNRKRGRGKVGLIRYVKL-YS 201
+L W EE + + K LS ++G+ +D+ + + V L Y L Y
Sbjct: 311 LLHQWAEE-----LSTKVHPSKK--LSVYIHHGSTKKNLDSYELSQYDVVLTTYSMLAYE 363
Query: 202 WKMGTGILGLSYRLFEKLVSGDELSGILLDLPGL-FVFDEGHTPRNDDTCMFKALSRIKT 260
K ++ + + LL+ V DE HT RN DT K ++
Sbjct: 364 MKQND-----AFNNNNPATATPPPACSLLETSWYRIVLDEAHTIRNRDTLAAKCCVKLDA 418
Query: 261 RRRIILSGTPFQNNFQELENTLSLVR 286
+ R LSGTP QN+ E + L +R
Sbjct: 419 KYRWCLSGTPIQNHIDEFYSLLKFLR 444
Score = 46 (21.3 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 266 LSGTPFQNNFQELENTLSLVRQ 287
LS P Q+ FQ+L+N L R+
Sbjct: 4 LSAYPPQSTFQQLQNDEELARR 25
Score = 41 (19.5 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 261 RRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTV 296
R RI+L+ T F+ + N L +V + +RTV
Sbjct: 476 RLRILLASTVFRRTKETRVNNLPIVNLP-PKTIRTV 510
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 182 (69.1 bits), Expect = 5.1e-18, Sum P(4) = 5.1e-18
Identities = 49/131 (37%), Positives = 72/131 (54%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQS------------SIN 485
+VL+FSQ +T +++ L WR G E +DG+ ++R+ +I
Sbjct: 507 RVLIFSQ----MTRLLDILEDYCMWR-GYEYCRLDGQTPHEEREDKFLEVELLGQREAIE 561
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
N P+S I + ST+A GINL A V+L D WNP V+ QA+ RA+R+GQK+ V
Sbjct: 562 AFNVPNSSRFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVR 621
Query: 546 VYHLITSETLE 556
V+ LIT T+E
Sbjct: 622 VFRLITDNTVE 632
Score = 89 (36.4 bits), Expect = 5.1e-18, Sum P(4) = 5.1e-18
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
V DE H +N+ + + + + K+ R++L+GTP QNN EL
Sbjct: 312 VIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHEL 353
Score = 86 (35.3 bits), Expect = 5.1e-18, Sum P(4) = 5.1e-18
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP---VIIAPRSMLLTWEEEFKKW 155
G NG I++ G GKT T+ L Y+K H R P +++ P+S L W EFK+W
Sbjct: 204 GVNG-ILADEMGLGKTLQTIALL-GYLK-HYRNIPGPHMVLVPKSTLHNWMNEFKRW 257
Score = 50 (22.7 bits), Expect = 0.00028, Sum P(4) = 0.00028
Identities = 22/82 (26%), Positives = 34/82 (41%)
Query: 524 NPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS---NMVFPSSDGG 580
NP + A+ A R QK++ L ET E +KL Q W N +++
Sbjct: 821 NPDIPNPAV--AQREEQKKIDGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKY 878
Query: 581 GNDQT-TASEPLEDKILEEMAQ 601
G D + +E K EE+ +
Sbjct: 879 GRDDIDNIAREVEGKSPEEVME 900
Score = 37 (18.1 bits), Expect = 5.1e-18, Sum P(4) = 5.1e-18
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 296 VRKSGREISKAKHASLISSIGRCANH 321
V S ++ K + +++ + +C NH
Sbjct: 440 VLNSAGKMDKMRLLNILMQLRKCCNH 465
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 176 (67.0 bits), Expect = 6.0e-18, Sum P(5) = 6.0e-18
Identities = 47/164 (28%), Positives = 82/164 (50%)
Query: 416 LDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGK 474
L + G R +L +L + L+F+Q +T +++ L N G L +DG
Sbjct: 1368 LQYDCGKLQRLDKLLRDLKAGGHRALIFTQ----MTKMLDVLEQFLNIH-GHRYLRLDGT 1422
Query: 475 QDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISR 534
V++RQ + N+ + +L+S GINL GA V+ D+ WNP +++Q R
Sbjct: 1423 TKVEQRQILTDRFNNDNRILAFILSSRSGGL-GINLTGADTVIFYDLDWNPAMDKQCQDR 1481
Query: 535 AYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
+R+GQ R VH+Y ++ T+E + LR+ +K ++V +
Sbjct: 1482 CHRIGQTRDVHIYRFVSEYTIESNILRKANQKRMLDDVVIQEGE 1525
Score = 96 (38.9 bits), Expect = 6.0e-18, Sum P(5) = 6.0e-18
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGE 291
+ DE H +N + ++AL +TR R++L+GTP QNN EL + L + G+
Sbjct: 951 ILDEAHNIKNFRSQRWQALLTFRTRARLLLTGTPLQNNLTELWSLLFFLMPTDGD 1005
Score = 95 (38.5 bits), Expect = 6.0e-18, Sum P(5) = 6.0e-18
Identities = 26/68 (38%), Positives = 35/68 (51%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKW--GIDIP 160
NG I++ G GKT T+ L H P +++ P S++L WE EFKKW G I
Sbjct: 845 NG-ILADEMGLGKTIQTIALLAHLAVEHGVWGPHLVVVPTSVILNWEMEFKKWCPGFKIM 903
Query: 161 FYNLNKPE 168
Y N+ E
Sbjct: 904 TYYGNQEE 911
Score = 40 (19.1 bits), Expect = 6.0e-18, Sum P(5) = 6.0e-18
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 576 SSDGGGNDQTTASEPLEDKILEEM 599
S+ G G T A PL D+ + +
Sbjct: 1613 SASGAGQTPTQAGTPLPDEAQQSL 1636
Score = 37 (18.1 bits), Expect = 6.0e-18, Sum P(5) = 6.0e-18
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 23 EYNNVDPSFLDDLNSRDSGFDSQTG 47
E + VDP +DD + + D G
Sbjct: 570 ELDEVDPVLIDD-SDESTDMDDDMG 593
Score = 37 (18.1 bits), Expect = 0.00070, Sum P(5) = 0.00070
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 448 PLTLIMEQLRHRFNW 462
P + E+ HR NW
Sbjct: 1196 PFNTLRERQYHRTNW 1210
>ASPGD|ASPL0000052010 [details] [associations]
symbol:AN1255 species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000070
"mitotic sister chromatid segregation" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0060303 "regulation of nucleosome density" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:BN001308 GO:GO:0003677 EMBL:AACD01000017
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
KO:K11367 HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB RefSeq:XP_658859.1
ProteinModelPortal:Q5BDX5 STRING:Q5BDX5
EnsemblFungi:CADANIAT00001368 GeneID:2877029 KEGG:ani:AN1255.2
OMA:GPRRMAI Uniprot:Q5BDX5
Length = 1517
Score = 190 (71.9 bits), Expect = 6.8e-18, Sum P(3) = 6.8e-18
Identities = 46/140 (32%), Positives = 78/140 (55%)
Query: 429 ILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVL 487
+L +L + +VL+FSQ ++ L ++ + + +R G +DG R+ +I
Sbjct: 764 LLAKLKRDGHRVLIFSQMVKMLDILGDYMEYR-----GYTYQRLDGTIPSASRRLAIEHY 818
Query: 488 NDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVY 547
N P S + ST+A GINL+ A V+L D WNP + QA++RA+R+GQ + V VY
Sbjct: 819 NAPDSSDFAFILSTRAGGLGINLMTADTVILFDSDWNPQADLQAMARAHRIGQTKPVSVY 878
Query: 548 HLITSETLEWDKLRRQARKV 567
L++ +T+E + + R K+
Sbjct: 879 RLVSKDTVEEEVIERARNKL 898
Score = 85 (35.0 bits), Expect = 6.8e-18, Sum P(3) = 6.8e-18
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
DE H +N D+ ++ L + R++++GTP QNN EL L +
Sbjct: 580 DEAHRLKNRDSQLYIKLQEFNSPARLLITGTPIQNNLAELSALLDFL 626
Score = 81 (33.6 bits), Expect = 6.8e-18, Sum P(3) = 6.8e-18
Identities = 24/92 (26%), Positives = 41/92 (44%)
Query: 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLN 165
+++ G GKT T+ F+ + + P V++ P S + +W E F W D+ + N
Sbjct: 468 VLADEMGLGKTVQTVAFISWLRHVRRQQGPFVVVVPLSTMPSWAETFDNWSPDLNYVVYN 527
Query: 166 KPELSGKENNGAVALMD-NRKRGRGKVGLIRY 196
E S ++D N +R + V L Y
Sbjct: 528 GNEASRNVLKEYELMVDGNPRRPKFNVLLTTY 559
>UNIPROTKB|F1SDB8 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:CU462855
Ensembl:ENSSSCT00000007340 Uniprot:F1SDB8
Length = 905
Score = 158 (60.7 bits), Expect = 6.8e-18, Sum P(3) = 6.8e-18
Identities = 58/213 (27%), Positives = 99/213 (46%)
Query: 419 EAGIKTRFL--LILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQD 476
EA K L L+ S +VL+FSQ + L ++ + + +R G +DG
Sbjct: 349 EASGKLHLLDKLLAFLYSKGHRVLLFSQMTQMLDILQDYMDYR-----GYSYERVDGS-- 401
Query: 477 VKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAY 536
V+ + + + N I L ST+A G+NL A V+ +D +NP + QA +RA+
Sbjct: 402 VRGEERHLAIKNFGQQPIFIFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAH 461
Query: 537 RLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKIL 596
R+GQ + V V LI +T+E R+ A K+ +N + GG A P + L
Sbjct: 462 RIGQNKSVKVIRLIGRDTVEEIICRKAASKLKLTNTIIE----GGRFTLGAQRPAAEADL 517
Query: 597 EEMAQLYNNPSETLINAIIPQPKETELIETFGE 629
+ ++++ + L+++ E +L GE
Sbjct: 518 Q-LSEILKFGLDKLLSSEGSTMDEIDLESILGE 549
Score = 109 (43.4 bits), Expect = 6.8e-18, Sum P(3) = 6.8e-18
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 226 SGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
+ L P + V DE H +N ++ + K+LS R++L+GTP QN+ QEL + LS
Sbjct: 162 ASFLKSFPWSVLVVDEAHRLKNQNSLLHKSLSEFSVAFRLLLTGTPIQNSLQELYSLLSF 221
Query: 285 VRQE 288
V +
Sbjct: 222 VEPD 225
Score = 83 (34.3 bits), Expect = 6.8e-18, Sum P(3) = 6.8e-18
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 104 NGCIISHAPGTGKTGLTL-VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKK 154
NGCI+ G GKT T+ VF+ +L+ +I+ P S+L W+EE ++
Sbjct: 67 NGCILGDEMGLGKTCQTIAVFIYLAGRLNDEGPFLILCPLSVLSNWKEEMER 118
Score = 44 (20.5 bits), Expect = 2.8e-11, Sum P(3) = 2.8e-11
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 343 GTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVE 381
GT +Q SL L + ++PD F K E V+ FV+
Sbjct: 205 GTPIQNSLQELYSLLSFVEPDLFSK------EEVEDFVQ 237
Score = 37 (18.1 bits), Expect = 2.3e-05, Sum P(3) = 2.3e-05
Identities = 6/34 (17%), Positives = 17/34 (50%)
Query: 551 TSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQ 584
T + ++ + + + + W + PS++ G +Q
Sbjct: 537 TMDEIDLESILGETKDGQWISDALPSTEEGSREQ 570
>ZFIN|ZDB-GENE-070228-1 [details] [associations]
symbol:ercc6 "excision repair cross-complementing
rodent repair deficiency, complementation group 6" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-070228-1 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
EMBL:CR762493 IPI:IPI00933448 RefSeq:XP_688972.2
Ensembl:ENSDART00000112380 GeneID:560477 KEGG:dre:560477
NextBio:20883461 Bgee:F1RDN1 Uniprot:F1RDN1
Length = 1390
Score = 183 (69.5 bits), Expect = 6.9e-18, Sum P(3) = 6.9e-18
Identities = 52/146 (35%), Positives = 76/146 (52%)
Query: 428 LILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVL 487
L+ L +VL+F+Q + L I+E F G L MDG + RQ I
Sbjct: 825 LLRLWHKQGHRVLLFTQSRQMLE-ILEV----FVKENGFSYLKMDGTTTIASRQPLIAQF 879
Query: 488 NDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVY 547
N + + + +T+ G+NL GA+RVV+ D WNP + QA RA+R+GQK+ V VY
Sbjct: 880 NQ-NKDIFVFILTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKQQVTVY 938
Query: 548 HLITSETLEWDKLRRQARKVWWSNMV 573
L+T+ T+E RQ K + +N V
Sbjct: 939 RLLTAGTIEEKIYHRQIFKQFLTNRV 964
Score = 98 (39.6 bits), Expect = 6.9e-18, Sum P(3) = 6.9e-18
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
+ DEGH RN + + A + +T R ILSG+P QNN +EL + V
Sbjct: 621 ILDEGHKIRNPNAGVTTACKQFRTPHRFILSGSPMQNNLKELWSLFDFV 669
Score = 74 (31.1 bits), Expect = 6.9e-18, Sum P(3) = 6.9e-18
Identities = 30/99 (30%), Positives = 46/99 (46%)
Query: 62 VPRDVRKKMFPHQREGFEFIWK---NIAGGIDLDELKNSTSTGGGNGC-IISHAPGTGKT 117
+P + KK+F +Q+ G ++W+ AGGI DE+ G G II+ G +
Sbjct: 476 IPGFLWKKLFKYQQTGVRWMWELHCQQAGGILGDEM------GLGKTIQIIAFLAGLSYS 529
Query: 118 GL-TLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155
L T Y L P VI+ P +++ W +EF W
Sbjct: 530 KLKTRGSNYRYAGLGPT---VIVCPATVMHQWVKEFHTW 565
>UNIPROTKB|F1NP27 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02065411 EMBL:AADN02065412
EMBL:AADN02065413 IPI:IPI00591777 Ensembl:ENSGALT00000024661
ArrayExpress:F1NP27 Uniprot:F1NP27
Length = 1803
Score = 213 (80.0 bits), Expect = 7.0e-18, Sum P(3) = 7.0e-18
Identities = 65/200 (32%), Positives = 103/200 (51%)
Query: 427 LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSIN 485
LLI L N +VL+FSQ + L ++ E L++R F ++ +DG + R+ +++
Sbjct: 788 LLIRLRERGN-RVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALD 840
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
N S+ L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V+
Sbjct: 841 HFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVN 900
Query: 546 VYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT-TASEPLEDKIL--EEMAQL 602
+Y L+T ++E D L R +K+ ++V D G T S P EE++ +
Sbjct: 901 IYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFNKEELSAI 960
Query: 603 YNNPSETLINAIIPQPKETE 622
+E L P+ +E E
Sbjct: 961 LKFGAEELFKE--PEGEEQE 978
Score = 94 (38.1 bits), Expect = 7.0e-18, Sum P(3) = 7.0e-18
Identities = 38/142 (26%), Positives = 57/142 (40%)
Query: 15 PSRRAEWREYNNVDPSFLDDLNSRDSGFDSQTGCDPFTHAQGTVWELVPRDVRKKMFPHQ 74
P W + + F ++ S S+T PF + V + PR V K P
Sbjct: 414 PYSECSWEDGALIAKKFQARIDEYFSRNQSKT--TPFKDCK--VLKQRPRFVALKKQPSY 469
Query: 75 REGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRC 134
G E + L+ L + S GN CI++ G GKT T+ FL H
Sbjct: 470 IGGHESLELR---DYQLNGLWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLY 526
Query: 135 RP-VIIAPRSMLLTWEEEFKKW 155
P +++ P S L +W+ E + W
Sbjct: 527 GPFLLVVPLSTLTSWQREIQTW 548
Score = 50 (22.7 bits), Expect = 7.0e-18, Sum P(3) = 7.0e-18
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 239 DEGHTPRNDDTCMFKALSRIKT 260
DE H +NDD+ ++K L + T
Sbjct: 610 DEAHRLKNDDSLLYKTLIDLVT 631
>UNIPROTKB|F1N8K8 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:AADN02065411
EMBL:AADN02065412 EMBL:AADN02065413 IPI:IPI00588290
Ensembl:ENSGALT00000023601 ArrayExpress:F1N8K8 Uniprot:F1N8K8
Length = 1804
Score = 213 (80.0 bits), Expect = 7.0e-18, Sum P(3) = 7.0e-18
Identities = 65/200 (32%), Positives = 103/200 (51%)
Query: 427 LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSIN 485
LLI L N +VL+FSQ + L ++ E L++R F ++ +DG + R+ +++
Sbjct: 788 LLIRLRERGN-RVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALD 840
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
N S+ L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V+
Sbjct: 841 HFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVN 900
Query: 546 VYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT-TASEPLEDKIL--EEMAQL 602
+Y L+T ++E D L R +K+ ++V D G T S P EE++ +
Sbjct: 901 IYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFNKEELSAI 960
Query: 603 YNNPSETLINAIIPQPKETE 622
+E L P+ +E E
Sbjct: 961 LKFGAEELFKE--PEGEEQE 978
Score = 94 (38.1 bits), Expect = 7.0e-18, Sum P(3) = 7.0e-18
Identities = 38/142 (26%), Positives = 57/142 (40%)
Query: 15 PSRRAEWREYNNVDPSFLDDLNSRDSGFDSQTGCDPFTHAQGTVWELVPRDVRKKMFPHQ 74
P W + + F ++ S S+T PF + V + PR V K P
Sbjct: 414 PYSECSWEDGALIAKKFQARIDEYFSRNQSKT--TPFKDCK--VLKQRPRFVALKKQPSY 469
Query: 75 REGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRC 134
G E + L+ L + S GN CI++ G GKT T+ FL H
Sbjct: 470 IGGHESLELR---DYQLNGLWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLY 526
Query: 135 RP-VIIAPRSMLLTWEEEFKKW 155
P +++ P S L +W+ E + W
Sbjct: 527 GPFLLVVPLSTLTSWQREIQTW 548
Score = 50 (22.7 bits), Expect = 7.0e-18, Sum P(3) = 7.0e-18
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 239 DEGHTPRNDDTCMFKALSRIKT 260
DE H +NDD+ ++K L + T
Sbjct: 610 DEAHRLKNDDSLLYKTLIDLVT 631
>UNIPROTKB|B6EU02 [details] [associations]
symbol:JBP2 "Bifunctional helicase and thymine dioxygenase
JBP2" species:5689 "Leishmania tarentolae" [GO:0005634 "nucleus"
evidence=IDA] [GO:0050341 "thymine dioxygenase activity"
evidence=TAS] [GO:0070580 "base J metabolic process" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0016702 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0050341
GO:GO:0070580 InterPro:IPR024779 Pfam:PF12851 EMBL:FM242183
Uniprot:B6EU02
Length = 1098
Score = 156 (60.0 bits), Expect = 7.1e-18, Sum P(2) = 7.1e-18
Identities = 46/147 (31%), Positives = 77/147 (52%)
Query: 423 KTRFLL-ILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKR 480
K R L+ I+L + EK+++FS Y+ LI HR + G+ +R
Sbjct: 894 KMRVLVDIVLRVQARKEKLIIFSLYVGSQDLI-----HRTLTALRVCTFTVRGRDSQDRR 948
Query: 481 QSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQ 540
+ ++ ++ + +++ STK G++ A+ VVL D WNP V+ QAI+RAYR Q
Sbjct: 949 RRAMQEFSE-NKDLIVLVLSTKIAAYGLDFTAANHVVLFDSWWNPQVDAQAIARAYRRNQ 1007
Query: 541 KRVVHVYHLITSETLEWDKLRRQARKV 567
++ V VY LI++ ++ L Q RK+
Sbjct: 1008 RKPVTVYRLISATENKF-VLSSQTRKI 1033
Score = 151 (58.2 bits), Expect = 7.1e-18, Sum P(2) = 7.1e-18
Identities = 51/194 (26%), Positives = 92/194 (47%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYN 163
+GC+++ G GKT + L + + L P+ +I+ P+ ++ W +E KW + +
Sbjct: 562 SGCVVAMTMGLGKTLVALTLCFSQLHLAPQADILILTPKPIISHWVDEKNKWAM----HG 617
Query: 164 LNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD 223
L+ P + G +L ++ L+ Y + + + LG +F +++G+
Sbjct: 618 LHFPHFVASD--GLNSLEFEQQ-------LLEYERQKNNEKPK--LG---HVF--VINGE 661
Query: 224 ELSGILLDL----PGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
L+G L P L + DEGH + ++L R++ RI+LSGTP QN+ EL
Sbjct: 662 YLAGFLRRFKRFTPLLIIVDEGHRVAAKGNKLTESLDRLRCNLRIVLSGTPLQNDASELY 721
Query: 280 NTLSLVRQEFGEVL 293
+ V + G VL
Sbjct: 722 RLVGWVNKGVGRVL 735
>UNIPROTKB|E2QSK6 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0010332 "response to gamma
radiation" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009636 "response to toxic substance" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0045494 GO:GO:0010332
GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
GO:GO:0008094 GO:GO:0008023 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
OMA:NGEMQIF GO:GO:0000303 EMBL:AAEX03015368 RefSeq:XP_534944.2
UniGene:Cfa.1909 Ensembl:ENSCAFT00000010674 GeneID:477747
KEGG:cfa:477747 NextBio:20853169 Uniprot:E2QSK6
Length = 1486
Score = 192 (72.6 bits), Expect = 7.9e-18, Sum P(4) = 7.9e-18
Identities = 50/137 (36%), Positives = 76/137 (55%)
Query: 437 EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI 496
++VL+FSQ + L ++ LR + L MDG + RQ I N+ +S +
Sbjct: 851 QRVLLFSQSRQMLDILEVFLR-----AQKYSYLKMDGTTAIASRQPLITRYNEDTS-IFV 904
Query: 497 MLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
L +T+ G+NL GA+RV++ D WNP + QA RA+R+GQK+ V VY L+T+ T+E
Sbjct: 905 FLLTTRVGGIGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIE 964
Query: 557 WDKLRRQARKVWWSNMV 573
RQ K + +N V
Sbjct: 965 EKIYHRQIFKQFLTNRV 981
Score = 103 (41.3 bits), Expect = 7.9e-18, Sum P(4) = 7.9e-18
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
+ DEGH RN + + A + +T RIILSG+P QNN +EL
Sbjct: 640 ILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLREL 681
Score = 63 (27.2 bits), Expect = 7.9e-18, Sum P(4) = 7.9e-18
Identities = 26/99 (26%), Positives = 46/99 (46%)
Query: 62 VPRDVRKKMFPHQREGFEFIWK---NIAGGIDLDELKNSTSTGGGNGC-IISHAPGTGKT 117
+P + +K+F +Q+ G ++W+ AGGI DE+ G G II+ G +
Sbjct: 495 MPGFLFRKLFKYQQTGVRWLWELHCQQAGGILGDEM------GLGKTIQIIAFLAGLSYS 548
Query: 118 GL-TLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155
+ T + L P +I+ P +++ W +EF W
Sbjct: 549 KIRTRGSNYRFKGLGPT---IIVCPTTVMHQWVKEFHTW 584
Score = 40 (19.1 bits), Expect = 7.9e-18, Sum P(4) = 7.9e-18
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 574 FPSSDGGGNDQTTASEPLEDK 594
FP S+ ND T++ E K
Sbjct: 1051 FPDSNASTNDTTSSEEKFTAK 1071
>WB|WBGene00016868 [details] [associations]
symbol:C52B9.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:FO080644 PIR:T28937 RefSeq:NP_508736.1
ProteinModelPortal:Q22944 SMR:Q22944 STRING:Q22944 PaxDb:Q22944
EnsemblMetazoa:C52B9.8 GeneID:180705 KEGG:cel:CELE_C52B9.8
UCSC:C52B9.8 CTD:180705 WormBase:C52B9.8 InParanoid:Q22944
NextBio:910548 Uniprot:Q22944
Length = 1336
Score = 181 (68.8 bits), Expect = 1.0e-17, Sum P(3) = 1.0e-17
Identities = 58/184 (31%), Positives = 98/184 (53%)
Query: 429 ILLEL-STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYM--DGKQDVKKRQSSIN 485
IL +L +T +VL+F Q +T++ + L G + Y+ DG +R + ++
Sbjct: 691 ILPKLQATGHRVLMFFQMTSMMTIVEDFLA-------GGTIQYLRLDGSTKPDERGALLD 743
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
N P+S+ + + ST+A G+NL A V++ D WNP + QA RA+R+GQK V
Sbjct: 744 KFNAPNSEYFLFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQKAEVR 803
Query: 546 VYHLITSETLEWDKLRRQAR-KVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYN 604
V+ LIT+ ++E +K+ AR K+ V + G ++++T +E E ILE + + N
Sbjct: 804 VFRLITANSVE-EKILAAARYKLNVDEKVIQA--GKFDNRSTGAERRE--ILENIIKTEN 858
Query: 605 NPSE 608
E
Sbjct: 859 ESEE 862
Score = 89 (36.4 bits), Expect = 1.0e-17, Sum P(3) = 1.0e-17
Identities = 21/70 (30%), Positives = 35/70 (50%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFY 162
NG I++ G GKT T+ F+ M++ P ++I P S + W+ EF KW ++
Sbjct: 386 NG-ILADEMGLGKTIQTIAFITYLMEIKKTSGPFLVIVPLSTVPNWQNEFDKWAANVHLI 444
Query: 163 NLNKPELSGK 172
P+ + K
Sbjct: 445 AYKGPKETRK 454
Score = 83 (34.3 bits), Expect = 1.0e-17, Sum P(3) = 1.0e-17
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 237 VFDEGHTPRNDDTCMFKALS-RIKTRRRIILSGTPFQNNFQEL 278
+ DEGH +N + + L+ R + +RR++++GTP QN EL
Sbjct: 491 IIDEGHRLKNQHCKLTEMLNTRFQCQRRLLITGTPLQNKLPEL 533
Score = 37 (18.1 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 38/155 (24%), Positives = 59/155 (38%)
Query: 138 IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYV 197
++A L TW+ F K DI + K L ++ + M NR+ K L +
Sbjct: 65 VLANAYPLNTWDSNFMKIDDDI----IRKEALHYRDQD-----MKNREMYL-KENLHTFP 114
Query: 198 KLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSR 257
+ K LGLS F+ + L+ +L P F+ + R ++ L
Sbjct: 115 EERQTKAKIEYLGLSLLDFQTELRKKVLATTVLVPPNDFLINPWSIRRTK----YEYLQE 170
Query: 258 IKTRR-RIILSGTPFQNNFQELENTLSLVRQEFGE 291
+K R IL NF L++ R EF E
Sbjct: 171 LKRHPDRAILEKRRKVTNFHFLQSLTKHAR-EFKE 204
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 200 (75.5 bits), Expect = 1.1e-17, Sum P(3) = 1.1e-17
Identities = 56/176 (31%), Positives = 92/176 (52%)
Query: 429 ILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVL 487
+L +L N +VL+F+Q +T +++ L N+ G L +DG V++RQ +
Sbjct: 1666 LLRQLKVNGHRVLIFTQ----MTKMLDVLEAFLNYH-GHIYLRLDGSTRVEQRQILMERF 1720
Query: 488 NDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVY 547
N + + ST++ GINL GA V+ D WNP ++ QA R +R+GQ R VH+Y
Sbjct: 1721 NG-DKRIFCFILSTRSGGVGINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 1779
Query: 548 HLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTT--ASEPLEDKILEEMAQ 601
L++ T+E + L++ +K S+M GGN TT S ++D E ++
Sbjct: 1780 RLVSERTIEVNILKKANQKRMLSDMAIE----GGNFTTTYFKSSTIKDLFTMEQSE 1831
Score = 86 (35.3 bits), Expect = 1.1e-17, Sum P(3) = 1.1e-17
Identities = 25/67 (37%), Positives = 33/67 (49%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKW--GIDI- 159
NG I++ G GKT T+ L P +I+ P S++L WE EFKKW G I
Sbjct: 934 NG-ILADEMGLGKTIQTIALLAHLACAKGNWGPHLIVVPSSVMLNWEMEFKKWCPGFKIL 992
Query: 160 PFYNLNK 166
+Y K
Sbjct: 993 TYYGSQK 999
Score = 78 (32.5 bits), Expect = 1.1e-17, Sum P(3) = 1.1e-17
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
+ DE +N + ++ L T RR++L+GTP QN+ EL
Sbjct: 1040 ILDEAQNIKNFKSQRWQLLLNFSTERRLLLTGTPLQNDLMEL 1081
>ZFIN|ZDB-GENE-030131-6320 [details] [associations]
symbol:chd8 "chromodomain helicase DNA binding
protein 8" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0071339 "MLL1 complex" evidence=ISS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
ZFIN:ZDB-GENE-030131-6320 GO:GO:0005524 GO:GO:0006355 GO:GO:0016055
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 EMBL:AL928674 IPI:IPI00919855
UniGene:Dr.81397 PRIDE:B0R0I6 HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC
Uniprot:B0R0I6
Length = 2511
Score = 187 (70.9 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 52/160 (32%), Positives = 80/160 (50%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQAR 495
KVL+FSQ + L ++ + L H+ LY +DG+ RQ++I+ + P S
Sbjct: 1188 KVLIFSQMVRCLDILEDYLIHK-------RYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 1240
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
+ L T+A GINL A V+ D WNP + QA +R +R+GQ + V VY LIT +
Sbjct: 1241 VFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSY 1300
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGGND--QTTASEPLED 593
E + L + + K+ V S G Q + + +ED
Sbjct: 1301 EREMLDKASLKLGLDRAVLQSMSGNKESSIQQFSKKEIED 1340
Score = 93 (37.8 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 29/112 (25%), Positives = 56/112 (50%)
Query: 212 SYRLFEKLVSGDELSGILLDLPGL-------FVFDEGHTPRNDDTCMFKALSRIKTRRRI 264
+Y+ F+ L++ E+ IL D P L V DE H +N + + +L ++ ++
Sbjct: 953 AYK-FDALITTFEM--ILSDCPELREISWRCVVIDEAHRLKNRNCKLLDSLKMLEIEHKV 1009
Query: 265 ILSGTPFQNNFQELENTLSLVRQ-EFGEVLRTVRKSGREISKAKHASLISSI 315
+L+GTP QN +EL + L + +F + +R+ G ++ + + SI
Sbjct: 1010 LLTGTPLQNTVEELFSLLHFLEPAQFPSEIEFLREFG-DLKTEEQVQKLQSI 1060
Score = 81 (33.6 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155
CI++ G GKT ++ L + +IIAP S + WE EF W
Sbjct: 868 CILADEMGLGKTIQSIALLSEMFSAGVQSPFMIIAPLSTITNWEREFSNW 917
Score = 39 (18.8 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 86 AGGIDLDELKNSTSTGGGNGCIISHAPGTG 115
AGG + K GGG G +P G
Sbjct: 504 AGGATGAKKKGGGGVGGGGGGSKKKSPSAG 533
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 194 (73.4 bits), Expect = 1.2e-17, Sum P(4) = 1.2e-17
Identities = 48/139 (34%), Positives = 79/139 (56%)
Query: 429 ILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVL 487
+L +L +N +VL+F+Q +T +++ L N G L +DG +++RQ
Sbjct: 999 LLKDLVSNGHRVLIFTQ----MTKVLDILEQFLNIH-GHRYLRLDGATKIEQRQILTERF 1053
Query: 488 NDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVY 547
N+ + + + ST++ GINL GA V+ D WNP ++ QA R++R+GQ R VH+Y
Sbjct: 1054 NN-DDKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIGQTRDVHIY 1112
Query: 548 HLITSETLEWDKLRRQARK 566
LI+ T+E + LRR +K
Sbjct: 1113 RLISEYTVESNMLRRANQK 1131
Score = 81 (33.6 bits), Expect = 1.2e-17, Sum P(4) = 1.2e-17
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
+ DE H +N + +++L R++L+GTP QNN EL + L
Sbjct: 573 ILDEAHNIKNFRSQRWQSLLNFNAEHRLLLTGTPLQNNLVELWSLL 618
Score = 80 (33.2 bits), Expect = 1.2e-17, Sum P(4) = 1.2e-17
Identities = 27/74 (36%), Positives = 35/74 (47%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKW--GIDIP 160
NG I++ G GKT T+ L P +II P S++L WE EFKK+ G I
Sbjct: 467 NG-ILADEMGLGKTIQTIALLAHLACEKENWGPHLIIVPTSVMLNWEMEFKKFLPGFKIL 525
Query: 161 FYNLNKPELSGKEN 174
Y N E K +
Sbjct: 526 TYYGNPQERKEKRS 539
Score = 38 (18.4 bits), Expect = 1.2e-17, Sum P(4) = 1.2e-17
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 59 WELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDE-LKNST 98
W+++ R+VR++ E + +AG L LK+ST
Sbjct: 187 WKVIEREVRRRRAERAAEA-----QRVAGKEQLANILKHST 222
>UNIPROTKB|F1PWD8 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0003682 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 OMA:TFGVIFD EMBL:AAEX03015818
EMBL:AAEX03015819 EMBL:AAEX03015820 Ensembl:ENSCAFT00000011497
GeneTree:ENSGT00700000105087 Uniprot:F1PWD8
Length = 2994
Score = 189 (71.6 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 58/203 (28%), Positives = 96/203 (47%)
Query: 398 QQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQL 456
++F E+ + DS + AG +L +L +VL+FSQ + L ++ + L
Sbjct: 1266 EEFKETHNADSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYL 1325
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
R R E + DG+ RQ++I+ + P S + L T+A GINL A
Sbjct: 1326 IQR---RYPYERI--DGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTC 1380
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPS 576
++ D WNP + QA +R +R+GQ + V +Y LIT + E + + + K+ V S
Sbjct: 1381 IIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQS 1440
Query: 577 SDGGGNDQTTASEPLEDKILEEM 599
G N T + L K +E++
Sbjct: 1441 MSGREN-ATNGVQQLSKKEIEDL 1462
Score = 88 (36.0 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 106 CIISHAPGTGKTGLTLVFL-QAYMK-LHPRCRPVIIAPRSMLLTWEEEFKKW 155
CI++ G GKT ++ FL + Y+K +H ++IAP S + WE EF+ W
Sbjct: 988 CILADEMGLGKTIQSITFLYEIYLKGIHGPF--LVIAPLSTIPNWEREFRTW 1037
Score = 86 (35.3 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
Identities = 28/94 (29%), Positives = 45/94 (47%)
Query: 196 YVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGL-------FVFDEGHTPRNDD 248
Y + G I G SY+ F +++ E+ IL D P L V DE H +N +
Sbjct: 1058 YEMYFKDPQGRVIKG-SYK-FHAIITTFEM--ILTDCPELRNIPWRCVVIDEAHRLKNRN 1113
Query: 249 TCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
+ + L + +++L+GTP QN +EL + L
Sbjct: 1114 CKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLL 1147
>ASPGD|ASPL0000018137 [details] [associations]
symbol:AN4187 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005576
"extracellular region" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 EMBL:BN001302
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 EMBL:AACD01000068 OrthoDB:EOG44XNQZ
RefSeq:XP_661791.1 ProteinModelPortal:Q5B5J3 STRING:Q5B5J3
EnsemblFungi:CADANIAT00004481 GeneID:2873610 KEGG:ani:AN4187.2
Uniprot:Q5B5J3
Length = 1904
Score = 214 (80.4 bits), Expect = 1.3e-17, Sum P(4) = 1.3e-17
Identities = 66/200 (33%), Positives = 102/200 (51%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARI 496
+ LVF Q E L ++ ++ + + L +DG + +RQ +N N DPS +
Sbjct: 1687 RALVFCQMKEMLDIVQSEVLQKL--LPSVQFLRLDGAVEATRRQDIVNRFNSDPSYD--V 1742
Query: 497 MLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
+L +T G+NL GA V+ ++ WNP + QA+ RA+R+GQK+VV+VY LIT TLE
Sbjct: 1743 LLLTTSVGGLGLNLTGADTVIFVEHDWNPQKDIQAMDRAHRIGQKKVVNVYRLITRGTLE 1802
Query: 557 WDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSETLINAIIP 616
L Q K+ ++ V + G N T D++L+ L+N ET NA P
Sbjct: 1803 EKILNLQRFKIDVASTVVNQQNAGLNTMDT------DQLLD----LFNL-GETAENAEKP 1851
Query: 617 QP---KETELIETFGEFLNK 633
KE ++++ GE K
Sbjct: 1852 TEIGGKEVDMVDIDGELKEK 1871
Score = 101 (40.6 bits), Expect = 1.3e-17, Sum P(4) = 1.3e-17
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
V DEGH +N + A+ RI + R+ILSGTP QNN EL
Sbjct: 1452 VLDEGHLIKNPKAKVTMAVKRINSNHRLILSGTPIQNNVLEL 1493
Score = 44 (20.5 bits), Expect = 1.3e-17, Sum P(4) = 1.3e-17
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 137 VIIAPRSMLLTWEEEFKKWGIDIPFYN 163
+II P S+ W++E K++ PF N
Sbjct: 1382 LIICPPSLSGHWQQEVKQYA---PFLN 1405
Score = 40 (19.1 bits), Expect = 1.3e-17, Sum P(4) = 1.3e-17
Identities = 5/15 (33%), Positives = 10/15 (66%)
Query: 75 REGFEFIWKNIAGGI 89
+ G + +W+ I GG+
Sbjct: 787 KNGLDSLWETIVGGL 801
Score = 38 (18.4 bits), Expect = 3.5e-11, Sum P(3) = 3.5e-11
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 275 FQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASL 311
+ ++ LS+ R + +L T R++ + K ASL
Sbjct: 849 YSDISCYLSVARAQCHSLLNTFRETAPLLRSEKLASL 885
>UNIPROTKB|Q06A37 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:DQ978381 IPI:IPI00590082
RefSeq:NP_001071054.1 UniGene:Gga.20865 ProteinModelPortal:Q06A37
SMR:Q06A37 GeneID:421140 KEGG:gga:421140 CTD:55636
HOGENOM:HOG000246942 InParanoid:Q06A37 KO:K14437 OrthoDB:EOG4MCWZD
NextBio:20823957 Uniprot:Q06A37
Length = 3011
Score = 188 (71.2 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 58/203 (28%), Positives = 96/203 (47%)
Query: 398 QQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQL 456
++F E+ + DS + AG +L +L +VL+FSQ + L ++ + L
Sbjct: 1268 EEFKETHNADSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYL 1327
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
R R E + DG+ RQ++I+ + P S + L T+A GINL A
Sbjct: 1328 IQR---RYPYERI--DGRVRGNLRQAAIDRFSRPDSDRFVFLLCTRAGGLGINLTAADTC 1382
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPS 576
++ D WNP + QA +R +R+GQ + V +Y LIT + E + + + K+ V S
Sbjct: 1383 IIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQS 1442
Query: 577 SDGGGNDQTTASEPLEDKILEEM 599
G N T + L K +E++
Sbjct: 1443 MSGREN-ATNGVQQLSKKEIEDL 1464
Score = 88 (36.0 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 106 CIISHAPGTGKTGLTLVFL-QAYMK-LHPRCRPVIIAPRSMLLTWEEEFKKW 155
CI++ G GKT ++ FL + Y+K +H ++IAP S + WE EF+ W
Sbjct: 990 CILADEMGLGKTIQSITFLYEIYLKGIHGPF--LVIAPLSTIPNWEREFRTW 1039
Score = 87 (35.7 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 29/98 (29%), Positives = 50/98 (51%)
Query: 195 RYVKLYS--WKMGTG-ILGLSYRLFEKLVSGDELSGILLDLPGL-------FVFDEGHTP 244
R ++LY +K G ++ SY+ F +++ E+ IL D P L V DE H
Sbjct: 1055 RTIQLYEMYFKDPQGRVIKGSYK-FHAIITTFEM--ILTDCPELRNIPWRCVVIDEAHRL 1111
Query: 245 RNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
+N + + + L + +++L+GTP QN +EL + L
Sbjct: 1112 KNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLL 1149
Score = 42 (19.8 bits), Expect = 5.1e-13, Sum P(3) = 5.1e-13
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 357 VVILQPDEFQKRLCKAVEGVK 377
VVI + + R CK +EG+K
Sbjct: 1103 VVIDEAHRLKNRNCKLLEGLK 1123
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 171 (65.3 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 55/187 (29%), Positives = 97/187 (51%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
++L+FSQ +T +++ L + + L +DG +R + N+P S +
Sbjct: 713 RILLFSQ----MTRLIDLLEIYLSLNDYM-YLRLDGSTKTDQRGILLKQFNEPDSPYFMF 767
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L ST+A G+NL A +++ D WNP +++QA RA+R+GQK+ V V+ L++ ++E
Sbjct: 768 LLSTRAGGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSIGSIEE 827
Query: 558 DKLRRQARKVWWSNMVFPSSDGGGNDQTTAS---EPLEDKILEEMAQLYNN-PSETLINA 613
L R +K+ V + G N +TA E LE+ + + + L + PSE IN
Sbjct: 828 VILERAKQKMGIDAKVIQA--GLFNTTSTAQDRREMLEEIMSKGTSSLGEDVPSEREINR 885
Query: 614 IIPQPKE 620
+ + +E
Sbjct: 886 LAARTEE 892
Score = 103 (41.3 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 36/142 (25%), Positives = 62/142 (43%)
Query: 237 VFDEGHTPRNDDTCMFKALSR-IKTRRRIILSGTPFQNNFQELENTLS-LVRQEFGEVLR 294
+ DEGH +N + + K L + +RR++L+GTP QN+ QEL + L+ L+ F +
Sbjct: 511 IVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSIHN 570
Query: 295 TVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPFVNVHKGTVLQESLPGLR 354
++ ASL + + I PF+ K + +++ LPG
Sbjct: 571 FEEWFNTPFAECGSASL-------TDEEELLIINRLHHVIRPFLLRRKKSEVEKFLPGKT 623
Query: 355 HSVVILQPDEFQKRLCKAVEGV 376
++ +QK K V V
Sbjct: 624 QVILKCDMSAWQKLYYKQVTDV 645
Score = 75 (31.5 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDI 159
NG I++ G GKT T+ + ++ P +I+AP+++L WE EF W I
Sbjct: 406 NG-ILADEMGLGKTIQTIALIAYLLESKDLHGPHLILAPKAVLPNWENEFALWAPSI 461
>TAIR|locus:2160811 [details] [associations]
symbol:CHR24 "chromatin remodeling 24" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0046686 "response to cadmium ion" evidence=IEP] [GO:0006270
"DNA replication initiation" evidence=RCA] [GO:0006275 "regulation
of DNA replication" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048439 "flower morphogenesis" evidence=RCA] [GO:0048519
"negative regulation of biological process" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046686 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AF462829 EMBL:AY142010 IPI:IPI00526353 RefSeq:NP_201200.2
UniGene:At.28262 ProteinModelPortal:Q8W103 PaxDb:Q8W103
PRIDE:Q8W103 EnsemblPlants:AT5G63950.1 GeneID:836516
KEGG:ath:AT5G63950 TAIR:At5g63950 HOGENOM:HOG000029838
InParanoid:Q8W103 OMA:VIVYRLM PhylomeDB:Q8W103
ProtClustDB:CLSN2690259 Genevestigator:Q8W103 Uniprot:Q8W103
Length = 1090
Score = 186 (70.5 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 49/146 (33%), Positives = 75/146 (51%)
Query: 423 KTRFLLILLE--LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKR 480
K F++ LLE + +VL+FSQ + L LI + L G L +DG R
Sbjct: 733 KLSFIMSLLENLIPEGHRVLIFSQTRKMLNLIQDSLTSN-----GYSFLRIDGTTKAPDR 787
Query: 481 QSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQ 540
++ + A I L +++ G+ L A RV+++D WNP + Q++ RAYR+GQ
Sbjct: 788 LKTVEEFQE-GHVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQ 846
Query: 541 KRVVHVYHLITSETLEWDKLRRQARK 566
+ V VY L+TS T+E R+Q K
Sbjct: 847 TKDVIVYRLMTSATVEEKIYRKQVYK 872
Score = 117 (46.2 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 48/176 (27%), Positives = 75/176 (42%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFY 162
G G I+ G GKT FL R +++AP+++L W +E G+
Sbjct: 395 GKGGILGDDMGLGKTMQICSFLAGLFHSKLIKRALVVAPKTLLPHWMKELATVGLS---- 450
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222
+ + E G + + +G+G + L Y + + T L +
Sbjct: 451 QMTR-EYYGTSTKAREYDLHHILQGKG-ILLTTYDIV---RNNTKALQGD----DHYTDE 501
Query: 223 DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
D+ G D + DEGH +N +T K+L I + RII+SGTP QNN +EL
Sbjct: 502 DDEDGNKWDY---MILDEGHLIKNPNTQRAKSLLEIPSSHRIIISGTPIQNNLKEL 554
Score = 83 (34.3 bits), Expect = 4.6e-14, Sum P(2) = 4.6e-14
Identities = 26/96 (27%), Positives = 41/96 (42%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P + ++PHQREG ++W S T G G I+ G GKT
Sbjct: 369 LPGKIATMLYPHQREGLNWLW--------------SLHTQGKGG-ILGDDMGLGKTMQIC 413
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGI 157
FL R +++AP+++L W +E G+
Sbjct: 414 SFLAGLFHSKLIKRALVVAPKTLLPHWMKELATVGL 449
>CGD|CAL0002614 [details] [associations]
symbol:orf19.4502 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045898 "regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0002614 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 InterPro:IPR022707 Pfam:PF12054 EMBL:AACQ01000142
EMBL:AACQ01000141 RefSeq:XP_712896.1 RefSeq:XP_712928.1
ProteinModelPortal:Q59TC9 STRING:Q59TC9 GeneID:3645462
GeneID:3645500 KEGG:cal:CaO19.11978 KEGG:cal:CaO19.4502
Uniprot:Q59TC9
Length = 1915
Score = 204 (76.9 bits), Expect = 1.6e-17, Sum P(3) = 1.6e-17
Identities = 46/123 (37%), Positives = 72/123 (58%)
Query: 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQ 493
+ + L+F Q + L ++ +L ++ + +DG D + RQS + N DPS
Sbjct: 1685 SEHRALIFCQLKDMLDIVENELLRKY--LPSVTFMRLDGSTDPRDRQSIVRKFNEDPSID 1742
Query: 494 ARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553
++L +TK G+NL GA V+ ++ WNP + QA+ RA+RLGQK+VV+VY LIT +
Sbjct: 1743 --VLLLTTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRLITKD 1800
Query: 554 TLE 556
TLE
Sbjct: 1801 TLE 1803
Score = 109 (43.4 bits), Expect = 1.6e-17, Sum P(3) = 1.6e-17
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
V DEGH +N + + K++ R+K R+ILSGTP QNN EL
Sbjct: 1436 VLDEGHIIKNASSKLSKSVKRVKAEHRLILSGTPIQNNVLEL 1477
Score = 42 (19.8 bits), Expect = 1.6e-17, Sum P(3) = 1.6e-17
Identities = 22/97 (22%), Positives = 41/97 (42%)
Query: 62 VPRDVRKKMFPHQREGFE---FIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
+P ++ + +Q+EG F+ K GI D++ + CI+S +
Sbjct: 1294 LPVTIKATLRKYQQEGVNWLAFLNKYHLHGILCDDMGLGKTLQ--TICIVSSDHHIREEN 1351
Query: 119 LTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155
Y KL P ++I P S++ WE+E ++
Sbjct: 1352 FKETGSAEYRKL-PS---LVICPPSLIGHWEQEINQY 1384
>RGD|1311921 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10116 "Rattus norvegicus" [GO:0001501 "skeletal system
development" evidence=IEA;ISO] [GO:0001568 "blood vessel
development" evidence=ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003007 "heart morphogenesis"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0007417 "central
nervous system development" evidence=IEA;ISO] [GO:0007512 "adult
heart development" evidence=IEA;ISO] [GO:0007605 "sensory
perception of sound" evidence=IEA;ISO] [GO:0007626 "locomotory
behavior" evidence=ISO] [GO:0007628 "adult walking behavior"
evidence=IEA;ISO] [GO:0008015 "blood circulation" evidence=IEA;ISO]
[GO:0021545 "cranial nerve development" evidence=IEA;ISO]
[GO:0030217 "T cell differentiation" evidence=IEA;ISO] [GO:0030540
"female genitalia development" evidence=IEA;ISO] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA;ISO] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA;ISO] [GO:0042471 "ear morphogenesis" evidence=ISO]
[GO:0042472 "inner ear morphogenesis" evidence=ISO] [GO:0043010
"camera-type eye development" evidence=ISO] [GO:0043584 "nose
development" evidence=IEA;ISO] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA;ISO] [GO:0048806 "genitalia
development" evidence=ISO] [GO:0048844 "artery morphogenesis"
evidence=IEA;ISO] [GO:0050890 "cognition" evidence=IEA;ISO]
[GO:0060021 "palate development" evidence=IEA;ISO] [GO:0060041
"retina development in camera-type eye" evidence=IEA;ISO]
[GO:0060123 "regulation of growth hormone secretion"
evidence=IEA;ISO] [GO:0060173 "limb development" evidence=ISO]
[GO:0060324 "face development" evidence=IEA;ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 RGD:1311921 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0008015 GO:GO:0003007
GO:GO:0050890 GO:GO:0001701 GO:GO:0040018 GO:GO:0007417
GO:GO:0003682 GO:GO:0001501 GO:GO:0060041 GO:GO:0007605
GO:GO:0007512 GO:GO:0004386 GO:GO:0035116 GO:GO:0060324
GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030540
GO:GO:0007628 GO:GO:0030217 GO:GO:0048752 InterPro:IPR023780
CTD:55636 KO:K14437 OrthoDB:EOG4MCWZD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 IPI:IPI00366595
RefSeq:XP_003749947.1 PRIDE:D3ZAP7 Ensembl:ENSRNOT00000008901
GeneID:312974 KEGG:rno:312974 UCSC:RGD:1311921 Uniprot:D3ZAP7
Length = 2985
Score = 186 (70.5 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
Identities = 57/203 (28%), Positives = 96/203 (47%)
Query: 398 QQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQL 456
++F ++ + DS + AG +L +L +VL+FSQ + L ++ + L
Sbjct: 1256 EEFKDAHNADSPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYL 1315
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
R R E + DG+ RQ++I+ + P S + L T+A GINL A
Sbjct: 1316 IQR---RYPYERI--DGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTC 1370
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPS 576
++ D WNP + QA +R +R+GQ + V +Y LIT + E + + + K+ V S
Sbjct: 1371 IIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQS 1430
Query: 577 SDGGGNDQTTASEPLEDKILEEM 599
G N T + L K +E++
Sbjct: 1431 MSGREN-ATNGVQQLSKKEIEDL 1452
Score = 88 (36.0 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 106 CIISHAPGTGKTGLTLVFL-QAYMK-LHPRCRPVIIAPRSMLLTWEEEFKKW 155
CI++ G GKT ++ FL + Y+K +H ++IAP S + WE EF+ W
Sbjct: 978 CILADEMGLGKTIQSITFLYEIYLKGIHGPF--LVIAPLSTIPNWEREFRTW 1027
Score = 87 (35.7 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
Identities = 29/98 (29%), Positives = 50/98 (51%)
Query: 195 RYVKLYS--WKMGTG-ILGLSYRLFEKLVSGDELSGILLDLPGL-------FVFDEGHTP 244
R ++LY +K G ++ SY+ F +++ E+ IL D P L V DE H
Sbjct: 1043 RTIQLYEMYFKDPQGRVIKGSYK-FHAIITTFEM--ILTDCPELRNIPWRCVVIDEAHRL 1099
Query: 245 RNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
+N + + + L + +++L+GTP QN +EL + L
Sbjct: 1100 KNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLL 1137
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 182 (69.1 bits), Expect = 2.1e-17, Sum P(4) = 2.1e-17
Identities = 48/136 (35%), Positives = 74/136 (54%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ L ++ + R N+ E +DG + R +I+ N P S+ +
Sbjct: 520 RVLIFSQMSRLLDILEDYCYFR-NY----EYCRIDGSTAHEDRIQAIDDYNAPDSKKFVF 574
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L +T+A GINL A VVL D WNP + QA+ RA+R+GQK+ V V+ L+T ++E
Sbjct: 575 LLTTRAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQVKVFRLVTDNSVEE 634
Query: 558 DKLRRQARKVWWSNMV 573
L R +K+ +V
Sbjct: 635 KILERATQKLRLDQLV 650
Score = 95 (38.5 bits), Expect = 2.1e-17, Sum P(4) = 2.1e-17
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
+ DE H +N+++ + + L +R R++++GTP QNN EL
Sbjct: 322 IIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPLQNNLHEL 363
Score = 73 (30.8 bits), Expect = 2.1e-17, Sum P(4) = 2.1e-17
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCR-P-VIIAPRSMLLTWEEEFKKWGIDI 159
I++ G GKT T+ FL Y++ + P ++IAP+S L W E +W D+
Sbjct: 218 ILADEMGLGKTLQTISFL-GYLRYIEKIPGPFLVIAPKSTLNNWLREINRWTPDV 271
Score = 39 (18.8 bits), Expect = 2.1e-17, Sum P(4) = 2.1e-17
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 299 SGREISKAKHASLISSIGRCANH 321
+G + SK + +++ + +C NH
Sbjct: 456 NGSKESKTRLLNIMMQLRKCCNH 478
>MGI|MGI:1924001 [details] [associations]
symbol:Chd9 "chromodomain helicase DNA binding protein 9"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
MGI:MGI:1924001 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077 CTD:80205
KO:K14438 OMA:MWGHQTA EMBL:DQ127229 EMBL:AK034446 EMBL:AK039562
EMBL:AK084000 EMBL:AB093226 EMBL:BC052896 IPI:IPI00229650
IPI:IPI00758139 RefSeq:NP_796198.1 UniGene:Mm.100615
ProteinModelPortal:Q8BYH8 SMR:Q8BYH8 STRING:Q8BYH8
PhosphoSite:Q8BYH8 PaxDb:Q8BYH8 PRIDE:Q8BYH8
Ensembl:ENSMUST00000048665 Ensembl:ENSMUST00000109614 GeneID:109151
KEGG:mmu:109151 UCSC:uc009msf.2 UCSC:uc009msi.2 InParanoid:Q8BYH8
OrthoDB:EOG4548XQ ChiTaRS:CHD9 NextBio:361700 Bgee:Q8BYH8
CleanEx:MM_CHD9 Genevestigator:Q8BYH8 Uniprot:Q8BYH8
Length = 2885
Score = 187 (70.9 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 50/164 (30%), Positives = 83/164 (50%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQAR 495
KVL+FSQ + L ++ + L H+ LY +DG+ RQ++I+ + P S
Sbjct: 1199 KVLIFSQMVRCLDILEDYLIHK-------RYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 1251
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
+ L T+A GINL A ++ D WNP + QA +R +R+GQ + V VY L+T +
Sbjct: 1252 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSY 1311
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEM 599
E + R + K+ V S G ++ + + L K +E++
Sbjct: 1312 EREMFDRASLKLGLDKAVLQSMSGRDSN-VSGIQQLSKKEIEDL 1354
Score = 91 (37.1 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW-GIDIPFYN 163
CI++ G GKT ++ FL + R +IIAP S + WE EF+ W I++ Y+
Sbjct: 880 CILADEMGLGKTIQSITFLYEILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYH 938
Score = 82 (33.9 bits), Expect = 2.3e-17, Sum P(3) = 2.3e-17
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 216 FEKLVSG-DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNN 274
FE ++ G EL+ I D + + DE H +N + + + L + +++L+GTP QN
Sbjct: 975 FEMILGGCGELNAI--DWRCVII-DEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNT 1031
Query: 275 FQELENTL 282
+EL + L
Sbjct: 1032 VEELFSLL 1039
Score = 42 (19.8 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 18/73 (24%), Positives = 32/73 (43%)
Query: 244 PRNDDTCMFKALSRIKTRRRI----ILSGTPFQNNFQ---ELENTLSLVRQEFGEVLRTV 296
P++ D K S++K + +I I G + + EL + + F E
Sbjct: 573 PKDRDNKKPKTYSKLKEKTKIGKLIITLGKKHKRRNESSDELSDAEQRSQHTFKEQHSQK 632
Query: 297 RKSGREISKAKHA 309
R+S R+I + K+A
Sbjct: 633 RRSNRQIKRKKYA 645
Score = 39 (18.8 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 270 PFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
P++++ EL+ + L + E E L+ R R + +
Sbjct: 803 PYEDSTWELKEDVDLAKIEEFEQLQASRPDTRHLDR 838
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 190 (71.9 bits), Expect = 2.5e-17, Sum P(3) = 2.5e-17
Identities = 61/194 (31%), Positives = 97/194 (50%)
Query: 415 KLDPEAGIKT-RFLLI---LLELSTN-EKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEV 468
K+D E + +FL++ L EL KVL+FSQ L ++M+ R FN+
Sbjct: 589 KIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSR---- 644
Query: 469 LYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFV 527
+DG +R+ +++ N DP + I L ST+A GINL A V++ D WNP
Sbjct: 645 --LDGSMSYSEREKNMHSFNTDP--EVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQS 700
Query: 528 ERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD--GGGNDQT 585
+ QA R +R+GQ + V VY L+T+ T++ + R A K ++ + GG +
Sbjct: 701 DLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLN 760
Query: 586 TASEPLEDKILEEM 599
+ L+ K L E+
Sbjct: 761 LSKNFLDPKELMEL 774
Score = 92 (37.4 bits), Expect = 2.5e-17, Sum P(3) = 2.5e-17
Identities = 18/59 (30%), Positives = 33/59 (55%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRT 295
+ DEGH +N + + L R +++L+GTP QNN EL + L+ + + + L++
Sbjct: 352 IVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKS 410
Score = 59 (25.8 bits), Expect = 2.5e-17, Sum P(3) = 2.5e-17
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA-PRSMLLTWEEEFKKWGIDIP 160
G NG I++ G GKT + + A M P ++ P S L W EFK++ DIP
Sbjct: 241 GING-ILADEMGLGKTVQCIATI-ALMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIP 298
Score = 45 (20.9 bits), Expect = 7.2e-11, Sum P(2) = 7.2e-11
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 21 WREYNNVDPSFLDDLNSRDSGFD 43
W N + P DDL S +S FD
Sbjct: 394 WSLLNFLLPDVFDDLKSFESWFD 416
Score = 41 (19.5 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 73 HQREGFEFI---WKNIAGGIDLDEL 94
+Q EG E++ W+N GI DE+
Sbjct: 226 YQVEGMEWLRMLWENGINGILADEM 250
>MGI|MGI:2444748 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=ISO] [GO:0001568 "blood vessel development" evidence=IMP]
[GO:0001701 "in utero embryonic development" evidence=ISO;IMP]
[GO:0003007 "heart morphogenesis" evidence=ISO;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007417 "central
nervous system development" evidence=ISO] [GO:0007512 "adult heart
development" evidence=IMP] [GO:0007605 "sensory perception of
sound" evidence=IMP] [GO:0007626 "locomotory behavior"
evidence=IMP] [GO:0007628 "adult walking behavior" evidence=IMP]
[GO:0008015 "blood circulation" evidence=IMP] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0021545 "cranial nerve
development" evidence=ISO] [GO:0030217 "T cell differentiation"
evidence=ISO] [GO:0030540 "female genitalia development"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0042471 "ear morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis"
evidence=ISO;IMP] [GO:0043010 "camera-type eye development"
evidence=IMP] [GO:0043584 "nose development" evidence=ISO;IMP]
[GO:0048752 "semicircular canal morphogenesis" evidence=IGI]
[GO:0048806 "genitalia development" evidence=ISO] [GO:0048844
"artery morphogenesis" evidence=IGI] [GO:0050890 "cognition"
evidence=ISO] [GO:0060021 "palate development" evidence=ISO;IMP]
[GO:0060041 "retina development in camera-type eye" evidence=ISO]
[GO:0060123 "regulation of growth hormone secretion" evidence=ISO]
[GO:0060173 "limb development" evidence=ISO] [GO:0060324 "face
development" evidence=ISO] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 MGI:MGI:2444748 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008015 GO:GO:0003007 GO:GO:0050890 GO:GO:0001701
GO:GO:0040018 GO:GO:0007417 GO:GO:0006351 GO:GO:0003682
GO:GO:0016568 GO:GO:0043010 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0030540 GO:GO:0007628 GO:GO:0030217
GO:GO:0048752 InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
CTD:55636 HOGENOM:HOG000246942 KO:K14437 OrthoDB:EOG4MCWZD
OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584 GO:GO:0060123 EMBL:AK042727
EMBL:AK171051 EMBL:AK171857 EMBL:AK172025 EMBL:AL732627
EMBL:AL805903 EMBL:BC034239 IPI:IPI00345676 IPI:IPI00666779
IPI:IPI00849588 RefSeq:NP_001074886.1 UniGene:Mm.138792
ProteinModelPortal:A2AJK6 SMR:A2AJK6 IntAct:A2AJK6 STRING:A2AJK6
PhosphoSite:A2AJK6 PaxDb:A2AJK6 PRIDE:A2AJK6
Ensembl:ENSMUST00000039267 Ensembl:ENSMUST00000051558
Ensembl:ENSMUST00000127476 GeneID:320790 KEGG:mmu:320790
UCSC:uc008rxy.1 UCSC:uc008rya.1 GeneTree:ENSGT00560000077077
InParanoid:A2AJK6 NextBio:397435 Bgee:A2AJK6 CleanEx:MM_CHD7
Genevestigator:A2AJK6 Uniprot:A2AJK6
Length = 2986
Score = 185 (70.2 bits), Expect = 2.7e-17, Sum P(3) = 2.7e-17
Identities = 57/203 (28%), Positives = 96/203 (47%)
Query: 398 QQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQL 456
++F E+ + +S + AG +L +L +VL+FSQ + L ++ + L
Sbjct: 1257 EEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYL 1316
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
R R E + DG+ RQ++I+ + P S + L T+A GINL A
Sbjct: 1317 IQR---RYPYERI--DGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTC 1371
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPS 576
++ D WNP + QA +R +R+GQ + V +Y LIT + E + + + K+ V S
Sbjct: 1372 IIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQS 1431
Query: 577 SDGGGNDQTTASEPLEDKILEEM 599
G N T + L K +E++
Sbjct: 1432 MSGREN-ATNGVQQLSKKEIEDL 1453
Score = 88 (36.0 bits), Expect = 2.7e-17, Sum P(3) = 2.7e-17
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 106 CIISHAPGTGKTGLTLVFL-QAYMK-LHPRCRPVIIAPRSMLLTWEEEFKKW 155
CI++ G GKT ++ FL + Y+K +H ++IAP S + WE EF+ W
Sbjct: 979 CILADEMGLGKTIQSITFLYEIYLKGIHGPF--LVIAPLSTIPNWEREFRTW 1028
Score = 87 (35.7 bits), Expect = 2.7e-17, Sum P(3) = 2.7e-17
Identities = 29/98 (29%), Positives = 50/98 (51%)
Query: 195 RYVKLYS--WKMGTG-ILGLSYRLFEKLVSGDELSGILLDLPGL-------FVFDEGHTP 244
R ++LY +K G ++ SY+ F +++ E+ IL D P L V DE H
Sbjct: 1044 RTIQLYEMYFKDPQGRVIKGSYK-FHAIITTFEM--ILTDCPELRNIPWRCVVIDEAHRL 1100
Query: 245 RNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
+N + + + L + +++L+GTP QN +EL + L
Sbjct: 1101 KNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLL 1138
>UNIPROTKB|Q9P2D1 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] [GO:0008015 "blood circulation"
evidence=IEA] [GO:0030540 "female genitalia development"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0043584 "nose development" evidence=IMP] [GO:0048806 "genitalia
development" evidence=IMP] [GO:0060021 "palate development"
evidence=IMP] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0001501 "skeletal system development"
evidence=IMP] [GO:0050890 "cognition" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP] [GO:0021545
"cranial nerve development" evidence=IMP] [GO:0060123 "regulation
of growth hormone secretion" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=TAS] [GO:0030217 "T cell differentiation"
evidence=IMP] [GO:0060173 "limb development" evidence=IMP]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0060324 "face development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0008015 GO:GO:0003007 GO:GO:0050890
GO:GO:0001701 GO:GO:0040018 GO:GO:0007417 GO:GO:0006351
GO:GO:0003682 GO:GO:0016568 GO:GO:0048806 GO:GO:0042472
GO:GO:0001501 GO:GO:0060041 GO:GO:0007605 GO:GO:0007512
GO:GO:0004386 GO:GO:0035116 GO:GO:0060324 GO:GO:0060021
GO:GO:0060173 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150 CTD:55636
KO:K14437 OrthoDB:EOG4MCWZD EMBL:AC023102 EMBL:AC113143
EMBL:AB037837 EMBL:AK000364 EMBL:AK000368 EMBL:BC014681
EMBL:BC051264 EMBL:BC053890 EMBL:BC068000 EMBL:BC080627
EMBL:BC110818 IPI:IPI00472901 IPI:IPI00794880 RefSeq:NP_060250.2
UniGene:Hs.20395 UniGene:Hs.733236 PDB:2CKC PDB:2V0E PDB:2V0F
PDBsum:2CKC PDBsum:2V0E PDBsum:2V0F ProteinModelPortal:Q9P2D1
SMR:Q9P2D1 DIP:DIP-48685N IntAct:Q9P2D1 STRING:Q9P2D1
PhosphoSite:Q9P2D1 DMDM:148877246 PaxDb:Q9P2D1 PRIDE:Q9P2D1
Ensembl:ENST00000307121 Ensembl:ENST00000423902
Ensembl:ENST00000525508 GeneID:55636 KEGG:hsa:55636 UCSC:uc003xue.3
GeneCards:GC08P061642 H-InvDB:HIX0007533 HGNC:HGNC:20626 MIM:214800
MIM:608765 MIM:608892 MIM:612370 neXtProt:NX_Q9P2D1 Orphanet:138
Orphanet:478 Orphanet:432 PharmGKB:PA134948695 InParanoid:Q9P2D1
OMA:TFGVIFD EvolutionaryTrace:Q9P2D1 GenomeRNAi:55636 NextBio:60291
ArrayExpress:Q9P2D1 Bgee:Q9P2D1 CleanEx:HS_CHD7
Genevestigator:Q9P2D1 GermOnline:ENSG00000171316 GO:GO:0021545
GO:GO:0043584 GO:GO:0060123 Uniprot:Q9P2D1
Length = 2997
Score = 185 (70.2 bits), Expect = 2.7e-17, Sum P(3) = 2.7e-17
Identities = 57/203 (28%), Positives = 96/203 (47%)
Query: 398 QQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQL 456
++F E+ + +S + AG +L +L +VL+FSQ + L ++ + L
Sbjct: 1267 EEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYL 1326
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
R R E + DG+ RQ++I+ + P S + L T+A GINL A
Sbjct: 1327 IQR---RYPYERI--DGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTC 1381
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPS 576
++ D WNP + QA +R +R+GQ + V +Y LIT + E + + + K+ V S
Sbjct: 1382 IIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQS 1441
Query: 577 SDGGGNDQTTASEPLEDKILEEM 599
G N T + L K +E++
Sbjct: 1442 MSGREN-ATNGVQQLSKKEIEDL 1463
Score = 88 (36.0 bits), Expect = 2.7e-17, Sum P(3) = 2.7e-17
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 106 CIISHAPGTGKTGLTLVFL-QAYMK-LHPRCRPVIIAPRSMLLTWEEEFKKW 155
CI++ G GKT ++ FL + Y+K +H ++IAP S + WE EF+ W
Sbjct: 989 CILADEMGLGKTIQSITFLYEIYLKGIHGPF--LVIAPLSTIPNWEREFRTW 1038
Score = 87 (35.7 bits), Expect = 2.7e-17, Sum P(3) = 2.7e-17
Identities = 29/98 (29%), Positives = 50/98 (51%)
Query: 195 RYVKLYS--WKMGTG-ILGLSYRLFEKLVSGDELSGILLDLPGL-------FVFDEGHTP 244
R ++LY +K G ++ SY+ F +++ E+ IL D P L V DE H
Sbjct: 1054 RTIQLYEMYFKDPQGRVIKGSYK-FHAIITTFEM--ILTDCPELRNIPWRCVVIDEAHRL 1110
Query: 245 RNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
+N + + + L + +++L+GTP QN +EL + L
Sbjct: 1111 KNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLL 1148
>UNIPROTKB|F1NVT7 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00818616
Ensembl:ENSGALT00000040615 ArrayExpress:F1NVT7 Uniprot:F1NVT7
Length = 1257
Score = 172 (65.6 bits), Expect = 3.0e-17, Sum P(3) = 3.0e-17
Identities = 49/165 (29%), Positives = 81/165 (49%)
Query: 433 LSTNEKVLVFSQYIEPLTLIMEQL-RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPS 491
++ KVL+FSQ + L ++ + L + R+ + +DG+ RQ++I+ P
Sbjct: 718 IAGGHKVLIFSQMVRCLDILEDYLIQRRYTYER------IDGRVRGNLRQAAIDRFCKPD 771
Query: 492 SQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLIT 551
S + L T+A GINL A ++ D WNP + QA +R +R+GQ + V VY LIT
Sbjct: 772 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLIT 831
Query: 552 SETLEWDKLRRQARKVWWSNMVFPSSD--GGGND-QTTASEPLED 593
+ E + + + K+ V + GG N Q + +ED
Sbjct: 832 RNSYEREMFDKASLKLGLDKAVLQDINRKGGTNGVQQLSKMEVED 876
Score = 91 (37.1 bits), Expect = 3.0e-17, Sum P(3) = 3.0e-17
Identities = 28/103 (27%), Positives = 54/103 (52%)
Query: 195 RYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGL-------FVFDEGHTPRND 247
+Y +Y G + G+ ++ F+ +++ E+ IL D P L V DE H +N
Sbjct: 473 QYEMVYRDTQGNPLPGI-FK-FQVVITTFEM--ILADCPELKKIQWRCVVIDEAHRLKNR 528
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR-QEF 289
+ + + L + +++L+GTP QN+ +EL + L+ + Q+F
Sbjct: 529 NCKLLEGLKLMALEHKVLLTGTPLQNSVEELFSLLNFLEPQQF 571
Score = 85 (35.0 bits), Expect = 3.0e-17, Sum P(3) = 3.0e-17
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155
CI++ G GKT ++ FL + +IIAP S + WE EF+ W
Sbjct: 404 CILADEMGLGKTIQSITFLSEIFLMGIHGPFLIIAPLSTITNWEREFRTW 453
Score = 46 (21.3 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 22/96 (22%), Positives = 39/96 (40%)
Query: 357 VVILQPDEFQKRLCKAVEGVKSFVELNYCXXXXXXXXXXXXQQFFESFDVDSAKLARLKL 416
VVI + + R CK +EG+K + L + ++ F + L
Sbjct: 517 VVIDEAHRLKNRNCKLLEGLK-LMALEHKVLLTGTPLQNSVEELFSLLNF---------L 566
Query: 417 DPEA-GIKTRFLLILLELSTNEKVLVFSQYIEPLTL 451
+P+ +T FL +L T E+V ++P+ L
Sbjct: 567 EPQQFPSETAFLEEFGDLKTEEQVKKLQSILKPMML 602
Score = 37 (18.1 bits), Expect = 9.4e-12, Sum P(3) = 9.4e-12
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 343 GTVLQESLPGLRHSVVILQPDEF 365
GT LQ S+ L + L+P +F
Sbjct: 549 GTPLQNSVEELFSLLNFLEPQQF 571
>UNIPROTKB|B5DE69 [details] [associations]
symbol:chd8 "Chromodomain-helicase-DNA-binding protein 8"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus"
evidence=ISS] [GO:0071339 "MLL1 complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0016055 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG107676 CTD:57680
KO:K04494 EMBL:BC168549 RefSeq:NP_001131089.2 UniGene:Str.42730
GeneID:100192376 KEGG:xtr:100192376 Xenbase:XB-GENE-966847
Uniprot:B5DE69
Length = 2184
Score = 181 (68.8 bits), Expect = 3.3e-17, Sum P(3) = 3.3e-17
Identities = 49/164 (29%), Positives = 80/164 (48%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQAR 495
KVL+FSQ + L ++ + L R LY +DG+ RQ++I+ + P S
Sbjct: 1095 KVLIFSQMVRCLDILEDYLIQR-------RYLYERIDGRVRGNMRQAAIDRFSRPDSDRF 1147
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
+ L T+A GINL A ++ D WNP + QA +R +R+GQ + V +Y LIT +
Sbjct: 1148 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKIYRLITRNSY 1207
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEM 599
E + + + K+ V S G N + + K +E++
Sbjct: 1208 EREMFDKASLKLGLDKAVLQSMSGRDNHLSGPIQQFTKKEIEDL 1251
Score = 91 (37.1 bits), Expect = 3.3e-17, Sum P(3) = 3.3e-17
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155
CI++ G GKT ++ FLQ + R ++IAP S + WE EF W
Sbjct: 776 CILADEMGLGKTIQSITFLQEVYNVGIRGPFLVIAPLSTITNWEREFGSW 825
Score = 83 (34.3 bits), Expect = 3.3e-17, Sum P(3) = 3.3e-17
Identities = 24/97 (24%), Positives = 49/97 (50%)
Query: 193 LIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGL-------FVFDEGHTPR 245
+I+ ++Y ++ +Y+ F+ L++ E+ +L D P L + DE H +
Sbjct: 842 MIQQYEMYCKDSKGRLIPGAYK-FDALITTFEM--VLSDCPELREIEWRCVIIDEAHRLK 898
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
N + + +L + +++L+GTP QN +EL + L
Sbjct: 899 NRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLL 935
>UNIPROTKB|F5H493 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0007256 "activation of JNKK
activity" evidence=IEA] [GO:0007257 "activation of JUN kinase
activity" evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IEA] [GO:0009636
"response to toxic substance" evidence=IEA] [GO:0010165 "response
to X-ray" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0003677 GO:GO:0009636 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
EMBL:AC073366 GO:GO:0006290 GO:GO:0007256 EMBL:AL138760
HGNC:HGNC:3438 ChiTaRS:ERCC6 GO:GO:0000303 IPI:IPI01012579
ProteinModelPortal:F5H493 SMR:F5H493 Ensembl:ENST00000542458
UCSC:uc009xod.3 ArrayExpress:F5H493 Bgee:F5H493 Uniprot:F5H493
Length = 863
Score = 193 (73.0 bits), Expect = 3.4e-17, Sum P(3) = 3.4e-17
Identities = 51/137 (37%), Positives = 76/137 (55%)
Query: 437 EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI 496
++VL+FSQ + L ++ LR + L MDG + RQ I N+ +S +
Sbjct: 226 QRVLLFSQSRQMLDILEVFLR-----AQKYTYLKMDGTTTIASRQPLITRYNEDTS-IFV 279
Query: 497 MLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
L +T+ G+NL GA+RVV+ D WNP + QA RA+R+GQK+ V VY L+T+ T+E
Sbjct: 280 FLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIE 339
Query: 557 WDKLRRQARKVWWSNMV 573
RQ K + +N V
Sbjct: 340 EKIYHRQIFKQFLTNRV 356
Score = 103 (41.3 bits), Expect = 3.4e-17, Sum P(3) = 3.4e-17
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
+ DEGH RN + + A + +T RIILSG+P QNN +EL
Sbjct: 14 ILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLREL 55
Score = 44 (20.5 bits), Expect = 3.4e-17, Sum P(3) = 3.4e-17
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 574 FPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSETL 610
FP+S+ ND T++ E E K E A + +N S+ L
Sbjct: 426 FPASNISVNDATSSEEKSEAKGAEVNA-VTSNRSDPL 461
>UNIPROTKB|F6XTU7 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AAEX03026896
Ensembl:ENSCAFT00000029649 Uniprot:F6XTU7
Length = 1075
Score = 168 (64.2 bits), Expect = 3.6e-17, Sum P(3) = 3.6e-17
Identities = 41/97 (42%), Positives = 55/97 (56%)
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
F W E + Y+ KK +I N P+S I + ST+A GINL A V+L
Sbjct: 541 FPWNE-DDTKYLFVYIIYKKE--AIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILY 597
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
D WNP V+ QA+ RA+R+GQK+ V V+ LIT T+E
Sbjct: 598 DSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVE 634
Score = 89 (36.4 bits), Expect = 3.6e-17, Sum P(3) = 3.6e-17
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
V DE H +N+ + + + + K+ R++L+GTP QNN EL
Sbjct: 309 VIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHEL 350
Score = 88 (36.0 bits), Expect = 3.6e-17, Sum P(3) = 3.6e-17
Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP---VIIAPRSMLLTWEEEFKKW 155
G NG I++ G GKT T+ L Y+K H R P +++ P+S L W EFK+W
Sbjct: 201 GVNG-ILADEMGLGKTLQTIALL-GYLK-HYRNIPGPHMVLVPKSTLYNWMNEFKRW 254
Score = 50 (22.7 bits), Expect = 8.3e-05, Sum P(3) = 8.3e-05
Identities = 22/82 (26%), Positives = 34/82 (41%)
Query: 524 NPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS---NMVFPSSDGG 580
NP + A+ A R QK++ L ET E +KL Q W N +++
Sbjct: 823 NPDIPNPAV--AQREEQKKIDGAEPLTPEETEEKEKLLTQGFTNWTKRDFNQFIKANEKY 880
Query: 581 GNDQT-TASEPLEDKILEEMAQ 601
G D + +E K EE+ +
Sbjct: 881 GRDDIDNIAREVEGKSPEEVME 902
>RGD|1594200 [details] [associations]
symbol:LOC680231 "similar to chromodomain helicase DNA binding
protein 9" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:1594200 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 OrthoDB:EOG4548XQ IPI:IPI00957597
Ensembl:ENSRNOT00000018201 Uniprot:D3ZVE2
Length = 2881
Score = 187 (70.9 bits), Expect = 3.7e-17, Sum P(3) = 3.7e-17
Identities = 50/164 (30%), Positives = 83/164 (50%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQAR 495
KVL+FSQ + L ++ + L H+ LY +DG+ RQ++I+ + P S
Sbjct: 1199 KVLIFSQMVRCLDILEDYLIHK-------RYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 1251
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
+ L T+A GINL A ++ D WNP + QA +R +R+GQ + V VY L+T +
Sbjct: 1252 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSY 1311
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEM 599
E + R + K+ V S G ++ + + L K +E++
Sbjct: 1312 EREMFDRASLKLGLDKAVLQSMSGRDSN-VSGIQQLSKKEIEDL 1354
Score = 91 (37.1 bits), Expect = 3.7e-17, Sum P(3) = 3.7e-17
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW-GIDIPFYN 163
CI++ G GKT ++ FL + R +IIAP S + WE EF+ W I++ Y+
Sbjct: 880 CILADEMGLGKTIQSITFLYEVLLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYH 938
Score = 80 (33.2 bits), Expect = 3.7e-17, Sum P(3) = 3.7e-17
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 216 FEKLVSG-DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNN 274
FE ++ G EL+ I + DE H +N + + + L + +++L+GTP QN
Sbjct: 975 FEMILGGCGELNAIEWRC---VIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNT 1031
Query: 275 FQELENTL 282
+EL + L
Sbjct: 1032 VEELFSLL 1039
Score = 49 (22.3 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 18/73 (24%), Positives = 34/73 (46%)
Query: 244 PRNDDTCMFKALSRIKTRRRI----ILSGTPFQNNFQ---ELENTLSLVRQEFGEVLRTV 296
P++ D KA S++K + +I I G + + EL + + + F E
Sbjct: 573 PKDRDNRKPKACSKLKEKTKIGKLIITLGKNHKRRSESSDELSDAEQMPQHTFKEQHSQK 632
Query: 297 RKSGREISKAKHA 309
R+S R++ + K+A
Sbjct: 633 RRSNRQVKRKKYA 645
Score = 41 (19.5 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 270 PFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
P++++ EL+ + L + E E L+ R R++ +
Sbjct: 803 PYEDSTWELKEDVDLAKIEEFEQLQASRPDTRQLDR 838
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 182 (69.1 bits), Expect = 3.9e-17, Sum P(3) = 3.9e-17
Identities = 52/168 (30%), Positives = 84/168 (50%)
Query: 434 STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQ 493
+T +VL+F Q + + ++ + LR R G + L +DG R + + N P S+
Sbjct: 870 ATGHRVLMFFQMTQIMNIMEDFLRLR-----GMKYLRLDGSTKSDDRSDLLKLFNAPDSE 924
Query: 494 ARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553
L ST+A G+NL A V++ D WNP + QA RA+R+GQK V + LITS
Sbjct: 925 YFCFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRILRLITSN 984
Query: 554 TLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQ 601
++E L R K+ V + G ++++T E D +L + +
Sbjct: 985 SVEEKILERAQFKLDMDGKVIQA--GKFDNKSTNEE--RDALLRTLLE 1028
Score = 97 (39.2 bits), Expect = 3.9e-17, Sum P(3) = 3.9e-17
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRR-RIILSGTPFQNNFQELENTLSLV 285
+ DEGH +N + + LS+ T R R+IL+GTP QNN EL L+ V
Sbjct: 662 IVDEGHRMKNTQSKLSSTLSQYYTSRYRLILTGTPLQNNLPELWALLNFV 711
Score = 69 (29.3 bits), Expect = 3.9e-17, Sum P(3) = 3.9e-17
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKW 155
NG I++ G GKT T+ + ++ P ++I P S L W EF+KW
Sbjct: 557 NG-ILADEMGLGKTIQTISLITHIIERKRNNGPFLVIVPLSTLTNWNLEFEKW 608
Score = 43 (20.2 bits), Expect = 1.2e-11, Sum P(3) = 1.2e-11
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 255 LSRIKTRRRIILSGTPFQNNFQELENTLS 283
LS+IK I+ G +N +L +TLS
Sbjct: 653 LSKIKWTHMIVDEGHRMKNTQSKLSSTLS 681
Score = 42 (19.8 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 27/109 (24%), Positives = 44/109 (40%)
Query: 263 RIILSGTPFQNNFQELENTLSLVRQEFGEVLRT----VRKSGREISKAKHASLISSIG-R 317
RI+ G P Q+ +N +R +VL T + K +SK K +I G R
Sbjct: 614 RIVYKGPPNARK-QQQQN----IRWGNFQVLLTTYEYIIKDRPILSKIKWTHMIVDEGHR 668
Query: 318 CANHRDDXXXXXXXXXIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQ 366
N + + + + GT LQ +LP L + + P+ F+
Sbjct: 669 MKNTQSKLSSTLSQYYTSRYRLILTGTPLQNNLPELWALLNFVLPNIFK 717
>WB|WBGene00007053 [details] [associations]
symbol:chd-7 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR023780 KO:K14437 GeneTree:ENSGT00560000077077
EMBL:FO080504 EMBL:FO080107 RefSeq:NP_491426.2 PaxDb:O61845
EnsemblMetazoa:T04D1.4 GeneID:172079 KEGG:cel:CELE_T04D1.4
UCSC:T04D1.4 CTD:172079 WormBase:T04D1.4 HOGENOM:HOG000213105
InParanoid:O61845 OMA:LLAFRME NextBio:873933 Uniprot:O61845
Length = 2967
Score = 251 (93.4 bits), Expect = 4.0e-17, P = 4.0e-17
Identities = 136/562 (24%), Positives = 224/562 (39%)
Query: 63 PRDVRKKMFPHQREGFEF----IWKNIAGGIDLDELKNSTSTG------GGNGCIISHAP 112
P +R+K P E + +WKN G L E + CI++
Sbjct: 1168 PAKIREKQRPEPEEWKKMSTSKVWKN---GNSLREYQFEGVDWLLYCYYNAQNCILADEM 1224
Query: 113 GTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGK 172
G GKT T+ FL +++ P S + W EF+ W ++N G
Sbjct: 1225 GLGKTVQTITFLSRIYDYGIHGPFLVVVPLSTIQNWVREFETWT------DMNAIVYHGS 1278
Query: 173 ENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDL 232
A ++ + K R+ +WK + FE +VS E L +
Sbjct: 1279 AY--AREVLQQYEVFYDK----RHCGAKNWKKNFVKIDALITTFETVVSDVEF---LKKI 1329
Query: 233 PG-LFVFDEGHTPRNDDT-CMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR-QEF 289
P + V DE H +N + + L + R++L+GTP QNN EL + L+ + Q+F
Sbjct: 1330 PWRVCVIDEAHRLKNRNCKLLVNGLLAFRMEHRVLLTGTPLQNNIDELFSLLNFLHPQQF 1389
Query: 290 GEVLRTVRKSGREISKAKHASLISSIGRCANHRDDXXXXXXXXXIAPFVNVHKGTVLQES 349
+ + G + I + R + P + T+++
Sbjct: 1390 DNSATFLEQFG-SCQTDDQVQKLQEILKPMMLR--RLKEDVEKSLGP----KEETIIEVQ 1442
Query: 350 LPGLRHSV--VILQPDEFQKRLCKAVEG---VKSFVELNYCXXXXXXXXXXXXQQFFESF 404
L ++ IL+ + F LCK + +EL C + F
Sbjct: 1443 LSDMQKKFYRAILERN-FS-HLCKGTSAPSLMNVMMELRKCCNHPFLINGAE-EAIMNDF 1499
Query: 405 -----DVDSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRH 458
D D LA L +G +L +L + KVL+FSQ ++ L L+ E L
Sbjct: 1500 RLAHPDWDEETLAHKALIQASGKVVLIEKLLPKLRKDGHKVLIFSQMVKVLDLLEEFL-- 1557
Query: 459 RFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVL 518
+ E + DG RQ++I+ + +S + L T+A GINL A V++
Sbjct: 1558 -ISMSYPFERI--DGNVRGDLRQAAIDRFSKENSDRFVFLLCTRAGGLGINLTAADTVII 1614
Query: 519 LDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
D WNP + QA +R +R+GQK++V VY LITS T E + + + K+ V S+
Sbjct: 1615 FDSDWNPQNDLQAQARCHRIGQKKLVKVYRLITSNTYEREMFDKASLKLGLDKAVLQSTT 1674
Query: 579 GGGNDQTTASEPLEDKILEEMA 600
+ T S+ +++L++ A
Sbjct: 1675 ALKAEGTALSKKDVEELLKKGA 1696
WARNING: HSPs involving 274 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.137 0.409 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 635 614 0.00088 120 3 11 22 0.39 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 524
No. of states in DFA: 627 (67 KB)
Total size of DFA: 353 KB (2175 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 51.76u 0.07s 51.83t Elapsed: 00:00:30
Total cpu time: 51.85u 0.07s 51.92t Elapsed: 00:00:31
Start: Mon May 20 14:54:03 2013 End: Mon May 20 14:54:34 2013
WARNINGS ISSUED: 2