BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006698
(635 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359474506|ref|XP_002279753.2| PREDICTED: uncharacterized protein LOC100267731 [Vitis vinifera]
Length = 1070
Score = 653 bits (1685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/654 (54%), Positives = 458/654 (70%), Gaps = 37/654 (5%)
Query: 4 IKDIDPPFATSPSRRAEWREYNNVD-PSFLDDLNSRDSGFDSQTGCDPFTHAQGTVWELV 62
IK I P F+ +P +E D S D+L + G SQ+G D H +GTVW+++
Sbjct: 421 IKYILPSFSRNPWGGSEKGNAGKEDCNSIFDELQFQKPGCGSQSGSDHGLHPEGTVWDII 480
Query: 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLV 122
P +R M+ HQ EGFEFIWKN+AGGI LDELK S+ + GG+GCIISHAPGTGKT LT+V
Sbjct: 481 P-GIRNSMYRHQCEGFEFIWKNVAGGIYLDELKRSSFSDGGSGCIISHAPGTGKTRLTIV 539
Query: 123 FLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
FLQ YM+L+P CRPVIIAPR+MLLTWEEEFKKW +DIPF+NLNK E SGKEN A+ +
Sbjct: 540 FLQTYMELYPACRPVIIAPRTMLLTWEEEFKKWNVDIPFHNLNKLEYSGKENITALNFLR 599
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG--------------- 227
IR VKLYSWK ILG+SY LFEKL L+
Sbjct: 600 RISHQGQSAKSIRMVKLYSWKKDRSILGISYTLFEKLAGERVLADQENKKVKVQDYTKVQ 659
Query: 228 ---ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
ILL+LPGL V DEGHTPRN+ + ++KALS+I T RRIILSGTPFQNNF+EL NTL L
Sbjct: 660 VRKILLELPGLLVLDEGHTPRNEQSLIWKALSKIDTERRIILSGTPFQNNFKELYNTLCL 719
Query: 285 VRQEFGEVLRTVR------KSGRE--ISKAKHASLISSIGRCANHRDDEKLKELKEKIAP 336
VR +F + + + K GR+ ++ K L SSIG+ A D+K++EL+ I P
Sbjct: 720 VRPKFADRIAVEQYGGFRGKRGRKSNAARGKWDLLTSSIGKIA----DDKVEELRAMIEP 775
Query: 337 FVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLL 396
FV++HKGT+LQE+LPGL+ SVV+LQP + Q+RL +++ K+ +EL Y VSL+SVHPSLL
Sbjct: 776 FVHIHKGTILQENLPGLKDSVVVLQPSDLQRRLLESIREKKNPLELGYLVSLISVHPSLL 835
Query: 397 PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIME 454
P + F D KL ++KL+P+ G+KT+FL+ + S NEKVLVFSQ+++PLT +M+
Sbjct: 836 PSDERKLF-FDQTKLEKIKLNPDIGVKTKFLMAFIRFSETMNEKVLVFSQFLDPLTYLMD 894
Query: 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGAS 514
QL++ F+W G+EVLYMDG++DVK+RQSSIN NDP+SQ R++LASTKAC EGI+LVGAS
Sbjct: 895 QLKYHFHWIVGKEVLYMDGQRDVKQRQSSINTFNDPASQVRVLLASTKACSEGISLVGAS 954
Query: 515 RVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVF 574
RV+LLDVVWNP VERQAISRAYRLGQ++VV++YHL+TS T+E +K RQA+K S +VF
Sbjct: 955 RVILLDVVWNPSVERQAISRAYRLGQRKVVYIYHLLTSGTMEEEKYCRQAKKDRLSELVF 1014
Query: 575 PSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSETLINAIIPQPKETELIETFG 628
S D +S EDKILEEM Q +N + + + II QPKE+ LIETFG
Sbjct: 1015 SSKDKTSAGNKISSTVSEDKILEEMVQ--HNKLKDMFDKIINQPKESNLIETFG 1066
>gi|255552930|ref|XP_002517508.1| ATP-dependent helicase, putative [Ricinus communis]
gi|223543519|gb|EEF45050.1| ATP-dependent helicase, putative [Ricinus communis]
Length = 1138
Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust.
Identities = 343/660 (51%), Positives = 442/660 (66%), Gaps = 41/660 (6%)
Query: 4 IKDIDPPFATSPSRRAEWREYNNVDPSFLDDLNSRDSGFDSQTGCDPFTHAQGTVWELVP 63
IK PF P +E R+ N ++L+ +DS DS+ G D THAQGTVW ++P
Sbjct: 488 IKYYTAPFGKQPWGNSERRDGNGEKLDIFEELHIQDSDDDSKHGYDSCTHAQGTVWGIIP 547
Query: 64 RDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVF 123
+ + + HQREGFEF+WKNIAGGI LD+LK T GG+GCIISHAPGTGKT L +VF
Sbjct: 548 -GIGRDLHEHQREGFEFLWKNIAGGIYLDKLKERTRFDGGSGCIISHAPGTGKTRLAIVF 606
Query: 124 LQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDN 183
LQ+YMKL+P CRP+II P ++LL+WE EFKKW DIPF+NLN + G+EN A+ L+
Sbjct: 607 LQSYMKLYPECRPLIITPSTLLLSWEAEFKKWKFDIPFHNLNTQKFCGRENAAALRLI-- 664
Query: 184 RKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV------------SGDELSGILLD 231
K G+ + +R VKLYSWK +LG+SY+LFE+LV S D++ LL
Sbjct: 665 -KSGQHSINSVRMVKLYSWKKDKSVLGISYKLFEELVREDKKRSKTQQKSEDDMRNALLQ 723
Query: 232 LPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGE 291
LPGL V DEGHTPRND++ +FKALSRI+T +RIILSGTPFQNNF EL NTL LVR +F +
Sbjct: 724 LPGLLVLDEGHTPRNDNSLVFKALSRIRTDKRIILSGTPFQNNFTELFNTLLLVRPKFAD 783
Query: 292 VLR-------TVRKSGREISKAKH--ASLISSIGRCANHR-DDEKLKELKEKIAPFVNVH 341
L ++ GR+ + A+ ASL SI + N R EKL+E++ I PFV+V+
Sbjct: 784 SLLYNCNESFGKKRRGRKTNGARGTWASLTGSIAKDGNDRFKAEKLEEVRAMIKPFVHVY 843
Query: 342 KGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQ--- 398
+G +LQ+ LPGLR ++VILQP + QK L V+G +F Y VSL+S+HPS L
Sbjct: 844 RGNILQQRLPGLRDAMVILQPVQLQKSLLDKVQGTGNF-HSEYLVSLVSLHPSSLLLLKK 902
Query: 399 -QFFESFDVDSAKLARLKLDPEAGIKTRFLL--ILLELSTNEKVLVFSQYIEPLTLIMEQ 455
E F + + L + KL+PE G KT+FL+ ILL + E+VLVFSQY++PL LI Q
Sbjct: 903 ISNLEKF-AERSVLEKHKLNPEMGAKTKFLMEIILLSEAMKERVLVFSQYLDPLKLIAMQ 961
Query: 456 LRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515
L RF+W +G+E+L+M GK D+ +RQS I ND S+A++MLASTKAC EGINLVGASR
Sbjct: 962 LESRFHWIQGKEILHMHGKLDMGERQSLIKDFNDRKSEAKVMLASTKACSEGINLVGASR 1021
Query: 516 VVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFP 575
VVLLDVVWNP V RQAISRAYRLGQ++VV++YHLI SETLE DK RQA K S +VF
Sbjct: 1022 VVLLDVVWNPSVVRQAISRAYRLGQEKVVYIYHLIASETLEEDKYCRQAEKERLSELVFD 1081
Query: 576 SSDGGGNDQTTA---SEPLEDKILEEMAQLYNNPSETLINAIIPQPKETELIETFGEFLN 632
SSD + Q + S+ ED+ILEE+ Q N ++ I+ QPK+ + E FG FLN
Sbjct: 1082 SSDRASSPQKISPKVSDGEEDRILEEIVQRKN--LRDILKKIVYQPKDV-IAEDFG-FLN 1137
>gi|297742194|emb|CBI33981.3| unnamed protein product [Vitis vinifera]
Length = 554
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 310/601 (51%), Positives = 398/601 (66%), Gaps = 75/601 (12%)
Query: 30 SFLDDLNSRDSGFDSQTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGI 89
S D+L + G SQ+G D H +GTVW+++P +R M+ HQ EGFEFIWKN+AGGI
Sbjct: 23 SIFDELQFQKPGCGSQSGSDHGLHPEGTVWDIIP-GIRNSMYRHQCEGFEFIWKNVAGGI 81
Query: 90 DLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWE 149
LDELK S+ + GG+GCIISHAPGTGKT LT+VFLQ YM+L+P CRPVIIAPR+MLLTWE
Sbjct: 82 YLDELKRSSFSDGGSGCIISHAPGTGKTRLTIVFLQTYMELYPACRPVIIAPRTMLLTWE 141
Query: 150 EEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGIL 209
EEFKKW +DIPF+NLNK E SGKEN A+ + IR VKLYSWK IL
Sbjct: 142 EEFKKWNVDIPFHNLNKLEYSGKENITALNFLRRISHQGQSAKSIRMVKLYSWKKDRSIL 201
Query: 210 GLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGT 269
G+SY LFEKL + GHTPRN+ + + +L+G
Sbjct: 202 GISYTLFEKLAG-----------------ERGHTPRNE-------------QNQSLLTG- 230
Query: 270 PFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKE 329
S K L SSIG+ A D+K++E
Sbjct: 231 ----------------------------------SLGKWDLLTSSIGKIA----DDKVEE 252
Query: 330 LKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLL 389
L+ I PFV++HKGT+LQE+LPGL+ SVV+LQP + Q+RL +++ K+ +EL Y VSL+
Sbjct: 253 LRAMIEPFVHIHKGTILQENLPGLKDSVVVLQPSDLQRRLLESIREKKNPLELGYLVSLI 312
Query: 390 SVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS--TNEKVLVFSQYIE 447
SVHPSLLP + F D KL ++KL+P+ G+KT+FL+ + S NEKVLVFSQ+++
Sbjct: 313 SVHPSLLPSDERKLF-FDQTKLEKIKLNPDIGVKTKFLMAFIRFSETMNEKVLVFSQFLD 371
Query: 448 PLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEG 507
PLT +M+QL++ F+W G+EVLYMDG++DVK+RQSSIN NDP+SQ R++LASTKAC EG
Sbjct: 372 PLTYLMDQLKYHFHWIVGKEVLYMDGQRDVKQRQSSINTFNDPASQVRVLLASTKACSEG 431
Query: 508 INLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567
I+LVGASRV+LLDVVWNP VERQAISRAYRLGQ++VV++YHL+TS T+E +K RQA+K
Sbjct: 432 ISLVGASRVILLDVVWNPSVERQAISRAYRLGQRKVVYIYHLLTSGTMEEEKYCRQAKKD 491
Query: 568 WWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSETLINAIIPQPKETELIETF 627
S +VF S D +S EDKILEEM Q +N + + + II QPKE+ LIETF
Sbjct: 492 RLSELVFSSKDKTSAGNKISSTVSEDKILEEMVQ--HNKLKDMFDKIINQPKESNLIETF 549
Query: 628 G 628
G
Sbjct: 550 G 550
>gi|224136438|ref|XP_002326860.1| chromatin remodeling complex subunit [Populus trichocarpa]
gi|222835175|gb|EEE73610.1| chromatin remodeling complex subunit [Populus trichocarpa]
Length = 576
Score = 560 bits (1442), Expect = e-156, Method: Compositional matrix adjust.
Identities = 306/583 (52%), Positives = 408/583 (69%), Gaps = 34/583 (5%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMK 129
M HQREGFEF+WKNIAGGI LD+LK + + GG GCIISHAPGTGKT LT+VFLQ YM+
Sbjct: 1 MHGHQREGFEFLWKNIAGGIYLDKLKENANLNGGTGCIISHAPGTGKTRLTIVFLQTYMQ 60
Query: 130 LHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRG 189
L+P RPVI+AP SMLLTWE EF KWG+DIPF+ +NK LSGKEN A+ L K
Sbjct: 61 LYPTSRPVIVAPCSMLLTWEAEFLKWGVDIPFHIMNKKNLSGKENRTAMDLFRELKPAER 120
Query: 190 KVGLIRYVKLYSWKMGTGILGLSYRLFEKLV-------------SGDELSGILLDLPGLF 236
+ IR VKLYSWK ILG+SYRLFE+LV D++ +LL+LPGL
Sbjct: 121 GLNAIRMVKLYSWKKERSILGISYRLFEELVGEEKSKTKVSDKTEDDQVRKVLLELPGLL 180
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTV 296
V DEGHTPRND + ++KALS+++T++RIILSGTPFQNNF EL NTL LV+ +F + +
Sbjct: 181 VLDEGHTPRNDRSRIWKALSKVQTQKRIILSGTPFQNNFDELYNTLCLVKPKFADEISNT 240
Query: 297 RKSGREISKAKHASLISSIGRCANHR-DDEKLKELKEKIAPFVNVHKGTVLQESLPGLRH 355
++ ASL ++IG+ + + + ++++EL++ I FV+VHKG VL+E LPGLR
Sbjct: 241 D------ARRNWASLTTAIGKVTDDKLEAQRVEELRKMIWQFVHVHKGGVLRERLPGLRD 294
Query: 356 SVVILQPDEFQKRL---CKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFD---VDSA 409
SVVILQP QK L K + G+ F E+ Y +S+LSVHPSLLP++ + + VD
Sbjct: 295 SVVILQPVHLQKTLLENVKQINGLDHF-EMEYLLSVLSVHPSLLPEKSVGTLEFKFVDRM 353
Query: 410 KLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQE 467
+L L+ PEAG+KT+FL+ L+ L + NEKVLVFSQY+EPL L+++QL F+W +G++
Sbjct: 354 ELEMLRSKPEAGVKTKFLMELIRLCQARNEKVLVFSQYLEPLNLVIKQLESNFSWIQGED 413
Query: 468 VLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFV 527
+LYM GK + +RQ I N+ +S A+++LAST+AC EGINLVGASRVVLLDV+WNP V
Sbjct: 414 ILYMHGKLKIDERQILIKHFNNANSNAKVLLASTRACSEGINLVGASRVVLLDVLWNPSV 473
Query: 528 ERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTA 587
ERQAISRAYRLGQ++VV++YHLITS T+E +K Q K SN+VF ++ N Q
Sbjct: 474 ERQAISRAYRLGQEKVVYIYHLITSGTMEEEKYFCQVEKERLSNLVFDCTNRSSNHQKGV 533
Query: 588 ---SEPLEDKILEEMAQLYNNPSETLINAIIPQPKETELIETF 627
+E +DKILEEM Q ++ + + I+ QPK+T ++++F
Sbjct: 534 FDIAEDKKDKILEEMVQ--HDKLKLMFKRIVYQPKDTNIVKSF 574
>gi|110740804|dbj|BAE98499.1| hypothetical protein [Arabidopsis thaliana]
Length = 1410
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 301/627 (48%), Positives = 408/627 (65%), Gaps = 52/627 (8%)
Query: 41 GFDS-----QTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELK 95
GFD+ GC ++GTVW+ +P V+ +M+PHQ+EGFEFIWKN+AG I L+ELK
Sbjct: 793 GFDAPNNSLNEGC---VSSEGTVWDKIP-GVKSQMYPHQQEGFEFIWKNLAGTIMLNELK 848
Query: 96 NSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155
+ ++ GCI+SHAPGTGKT LT++FLQAY++ P C+PVIIAP S+LLTW EEFKKW
Sbjct: 849 DFENSDETGGCIMSHAPGTGKTRLTIIFLQAYLQCFPDCKPVIIAPASLLLTWAEEFKKW 908
Query: 156 GIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL 215
I IPF+NL+ + +GKEN+ A+ L+ + IR VK+YSW ILG+SY L
Sbjct: 909 NISIPFHNLSSLDFTGKENSAALGLLMQKNATARSNNEIRMVKIYSWIKSKSILGISYNL 968
Query: 216 FEKLVSG-------------------DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALS 256
+EKL D++ IL+ PGL V DE HTPRN +C++K LS
Sbjct: 969 YEKLAGVKDEDKKTKMVREVKPDKELDDIREILMGRPGLLVLDEAHTPRNQRSCIWKTLS 1028
Query: 257 RIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVL-RTVRKSGREISKAKHASLISSI 315
+++T++RI+LSGTPFQNNF EL N L L R ++ E L T++KSG ++K +L
Sbjct: 1029 KVETQKRILLSGTPFQNNFLELCNVLGLARPKYLERLTSTLKKSGMTVTKRGKKNL---- 1084
Query: 316 GRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVE- 374
N ++ ++ELK + PFV+VHKG++LQ SLPGLR VV+L P E Q+R+ +++E
Sbjct: 1085 ---GNEINNRGIEELKAVMLPFVHVHKGSILQSSLPGLRECVVVLNPPELQRRVLESIEV 1141
Query: 375 ----GVKSFVELNYCVSLLSVHPSLLPQQFF---ESFDVDSAKLARLK---LDPEAGIKT 424
K+ E + +SL+SVHPSL+ + E +D A LA+LK LDP +KT
Sbjct: 1142 THNRKTKNVFETEHKLSLVSVHPSLVSRCKISEKERLSIDEALLAQLKKVRLDPNQSVKT 1201
Query: 425 RFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQS 482
RFL+ +EL EKVLVFSQYI+PL LIM+ L RF W G+EVLYM GK + K+RQ+
Sbjct: 1202 RFLMEFVELCEVIKEKVLVFSQYIDPLKLIMKHLVSRFKWNPGEEVLYMHGKLEQKQRQT 1261
Query: 483 SINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKR 542
IN NDP S+A++ LASTKAC EGI+LVGASRV+LLDVVWNP VERQAISRAYR+GQKR
Sbjct: 1262 LINEFNDPKSKAKVFLASTKACSEGISLVGASRVILLDVVWNPAVERQAISRAYRIGQKR 1321
Query: 543 VVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPL-EDKILEEMAQ 601
+V+ YHL+ T E K +QA+K S +VF S + +E + EDK+L+ M +
Sbjct: 1322 IVYTYHLVAKGTPEGPKYCKQAQKDRISELVFACSSRHDKGKEKIAEAVTEDKVLDTMVE 1381
Query: 602 LYNNPSETLINAIIPQPKETELIETFG 628
++ + + +I QPKE +L+E F
Sbjct: 1382 --HSKLGDMFDNLIVQPKEADLVEGFS 1406
>gi|8778726|gb|AAF79734.1|AC005106_15 T25N20.14 [Arabidopsis thaliana]
Length = 1465
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 301/627 (48%), Positives = 408/627 (65%), Gaps = 52/627 (8%)
Query: 41 GFDS-----QTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELK 95
GFD+ GC ++GTVW+ +P V+ +M+PHQ+EGFEFIWKN+AG I L+ELK
Sbjct: 848 GFDAPNNSLNEGC---VSSEGTVWDKIP-GVKSQMYPHQQEGFEFIWKNLAGTIMLNELK 903
Query: 96 NSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155
+ ++ GCI+SHAPGTGKT LT++FLQAY++ P C+PVIIAP S+LLTW EEFKKW
Sbjct: 904 DFENSDETGGCIMSHAPGTGKTRLTIIFLQAYLQCFPDCKPVIIAPASLLLTWAEEFKKW 963
Query: 156 GIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL 215
I IPF+NL+ + +GKEN+ A+ L+ + IR VK+YSW ILG+SY L
Sbjct: 964 NISIPFHNLSSLDFTGKENSAALGLLMQKNATARSNNEIRMVKIYSWIKSKSILGISYNL 1023
Query: 216 FEKLVSG-------------------DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALS 256
+EKL D++ IL+ PGL V DE HTPRN +C++K LS
Sbjct: 1024 YEKLAGVKDEDKKTKMVREVKPDKELDDIREILMGRPGLLVLDEAHTPRNQRSCIWKTLS 1083
Query: 257 RIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVL-RTVRKSGREISKAKHASLISSI 315
+++T++RI+LSGTPFQNNF EL N L L R ++ E L T++KSG ++K +L
Sbjct: 1084 KVETQKRILLSGTPFQNNFLELCNVLGLARPKYLERLTSTLKKSGMTVTKRGKKNL---- 1139
Query: 316 GRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVE- 374
N ++ ++ELK + PFV+VHKG++LQ SLPGLR VV+L P E Q+R+ +++E
Sbjct: 1140 ---GNEINNRGIEELKAVMLPFVHVHKGSILQSSLPGLRECVVVLNPPELQRRVLESIEV 1196
Query: 375 ----GVKSFVELNYCVSLLSVHPSLLPQQFF---ESFDVDSAKLARLK---LDPEAGIKT 424
K+ E + +SL+SVHPSL+ + E +D A LA+LK LDP +KT
Sbjct: 1197 THNRKTKNVFETEHKLSLVSVHPSLVSRCKISEKERLSIDEALLAQLKKVRLDPNQSVKT 1256
Query: 425 RFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQS 482
RFL+ +EL EKVLVFSQYI+PL LIM+ L RF W G+EVLYM GK + K+RQ+
Sbjct: 1257 RFLMEFVELCEVIKEKVLVFSQYIDPLKLIMKHLVSRFKWNPGEEVLYMHGKLEQKQRQT 1316
Query: 483 SINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKR 542
IN NDP S+A++ LASTKAC EGI+LVGASRV+LLDVVWNP VERQAISRAYR+GQKR
Sbjct: 1317 LINEFNDPKSKAKVFLASTKACSEGISLVGASRVILLDVVWNPAVERQAISRAYRIGQKR 1376
Query: 543 VVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPL-EDKILEEMAQ 601
+V+ YHL+ T E K +QA+K S +VF S + +E + EDK+L+ M +
Sbjct: 1377 IVYTYHLVAKGTPEGPKYCKQAQKDRISELVFACSSRHDKGKEKIAEAVTEDKVLDTMVE 1436
Query: 602 LYNNPSETLINAIIPQPKETELIETFG 628
++ + + +I QPKE +L+E F
Sbjct: 1437 --HSKLGDMFDNLIVQPKEADLVEGFS 1461
>gi|145335142|ref|NP_172040.2| chromatin remodeling 31 [Arabidopsis thaliana]
gi|332189724|gb|AEE27845.1| chromatin remodeling 31 [Arabidopsis thaliana]
Length = 1410
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 301/627 (48%), Positives = 408/627 (65%), Gaps = 52/627 (8%)
Query: 41 GFDS-----QTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELK 95
GFD+ GC ++GTVW+ +P V+ +M+PHQ+EGFEFIWKN+AG I L+ELK
Sbjct: 793 GFDAPNNSLNEGC---VSSEGTVWDKIP-GVKSQMYPHQQEGFEFIWKNLAGTIMLNELK 848
Query: 96 NSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155
+ ++ GCI+SHAPGTGKT LT++FLQAY++ P C+PVIIAP S+LLTW EEFKKW
Sbjct: 849 DFENSDETGGCIMSHAPGTGKTRLTIIFLQAYLQCFPDCKPVIIAPASLLLTWAEEFKKW 908
Query: 156 GIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL 215
I IPF+NL+ + +GKEN+ A+ L+ + IR VK+YSW ILG+SY L
Sbjct: 909 NISIPFHNLSSLDFTGKENSAALGLLMQKNATARSNNEIRMVKIYSWIKSKSILGISYNL 968
Query: 216 FEKLVSG-------------------DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALS 256
+EKL D++ IL+ PGL V DE HTPRN +C++K LS
Sbjct: 969 YEKLAGVKDEDKKTKMVREVKPDKELDDIREILMGRPGLLVLDEAHTPRNQRSCIWKTLS 1028
Query: 257 RIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVL-RTVRKSGREISKAKHASLISSI 315
+++T++RI+LSGTPFQNNF EL N L L R ++ E L T++KSG ++K +L
Sbjct: 1029 KVETQKRILLSGTPFQNNFLELCNVLGLARPKYLERLTSTLKKSGMTVTKRGKKNL---- 1084
Query: 316 GRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVE- 374
N ++ ++ELK + PFV+VHKG++LQ SLPGLR VV+L P E Q+R+ +++E
Sbjct: 1085 ---GNEINNRGIEELKAVMLPFVHVHKGSILQSSLPGLRECVVVLNPPELQRRVLESIEV 1141
Query: 375 ----GVKSFVELNYCVSLLSVHPSLLPQQFF---ESFDVDSAKLARLK---LDPEAGIKT 424
K+ E + +SL+SVHPSL+ + E +D A LA+LK LDP +KT
Sbjct: 1142 THNRKTKNVFETEHKLSLVSVHPSLVSRCKISEKERLSIDEALLAQLKKVRLDPNQSVKT 1201
Query: 425 RFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQS 482
RFL+ +EL EKVLVFSQYI+PL LIM+ L RF W G+EVLYM GK + K+RQ+
Sbjct: 1202 RFLMEFVELCEVIKEKVLVFSQYIDPLKLIMKHLVSRFKWNPGEEVLYMHGKLEQKQRQT 1261
Query: 483 SINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKR 542
IN NDP S+A++ LASTKAC EGI+LVGASRV+LLDVVWNP VERQAISRAYR+GQKR
Sbjct: 1262 LINEFNDPKSKAKVFLASTKACSEGISLVGASRVILLDVVWNPAVERQAISRAYRIGQKR 1321
Query: 543 VVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPL-EDKILEEMAQ 601
+V+ YHL+ T E K +QA+K S +VF S + +E + EDK+L+ M +
Sbjct: 1322 IVYTYHLVAKGTPEGPKYCKQAQKDRISELVFACSSRHDKGKEKIAEAVTEDKVLDTMVE 1381
Query: 602 LYNNPSETLINAIIPQPKETELIETFG 628
++ + + +I QPKE +L+E F
Sbjct: 1382 --HSKLGDMFDNLIVQPKEADLVEGFS 1406
>gi|297848822|ref|XP_002892292.1| hypothetical protein ARALYDRAFT_470549 [Arabidopsis lyrata subsp.
lyrata]
gi|297338134|gb|EFH68551.1| hypothetical protein ARALYDRAFT_470549 [Arabidopsis lyrata subsp.
lyrata]
Length = 1406
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 302/633 (47%), Positives = 409/633 (64%), Gaps = 47/633 (7%)
Query: 30 SFLDDLNSRDSGFDSQTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGI 89
SF+ L GC ++GTVW+ +P V+ +M+PHQ+EGFEFIWKN+AG I
Sbjct: 783 SFIGKLGFEPPNNSLNEGC---ISSEGTVWDKIP-GVKSQMYPHQQEGFEFIWKNLAGTI 838
Query: 90 DLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWE 149
L+ELK+ ++ GCI+SHAPGTGKT LT++FLQAY++ P C+PVIIAP S+LLTW
Sbjct: 839 LLNELKDFENSDETGGCIMSHAPGTGKTRLTIIFLQAYLQCFPDCKPVIIAPASLLLTWA 898
Query: 150 EEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGIL 209
EEFKKW I IPF+NL+ + +GKE++ A+ L+ + IR VK+YSW IL
Sbjct: 899 EEFKKWNISIPFHNLSSLDFTGKESSAALGLLMQKNATARSNNEIRMVKIYSWIKSKSIL 958
Query: 210 GLSYRLFEKLVSG-------------------DELSGILLDLPGLFVFDEGHTPRNDDTC 250
G+SY L+EKL D++ IL+ PGL V DE HTPRN +C
Sbjct: 959 GISYNLYEKLAGVKDEDKKTKTVREVKPDKELDDIREILMGRPGLLVLDEAHTPRNQRSC 1018
Query: 251 MFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVL-RTVRKSGREISKAKHA 309
++K LS+++T++RI+LSGTPFQNNFQEL N L L R ++ E L T++KSG ++K
Sbjct: 1019 IWKTLSKVETQKRILLSGTPFQNNFQELCNVLGLARPKYLERLTSTLKKSGMTVTKRGKK 1078
Query: 310 SLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRL 369
+L N ++ ++ELK + PFV+VHKG++LQ SLPGLR VV+L P E Q+R+
Sbjct: 1079 AL-------GNEINNRGIEELKAVMLPFVHVHKGSILQSSLPGLRECVVVLNPPELQRRV 1131
Query: 370 CKAVE-----GVKSFVELNYCVSLLSVHPSLLPQQFF---ESFDVDSAKLARLK---LDP 418
+++E K+ E + +SL+SVHPSL+ + E +D A LA+LK LDP
Sbjct: 1132 LESIEVTHNRKTKNVFETEHKLSLVSVHPSLVSRCKLSEKERLSIDEALLAQLKKVRLDP 1191
Query: 419 EAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQD 476
+KTRFL+ +EL EKVLVFSQYI+PL LIM+ L RF W GQEVLYM GK +
Sbjct: 1192 NQSVKTRFLMEFVELCEVIKEKVLVFSQYIDPLKLIMKHLVSRFKWNPGQEVLYMHGKLE 1251
Query: 477 VKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAY 536
K+RQ+ IN NDP S+A++ LASTKAC EGI+LVGASRV+LLDVVWNP VERQAISRAY
Sbjct: 1252 QKQRQTLINEFNDPKSKAKVFLASTKACSEGISLVGASRVILLDVVWNPAVERQAISRAY 1311
Query: 537 RLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPL-EDKI 595
R+GQ+R+V+ YHL+ T E K +QA+K S +VF S + +E + EDK+
Sbjct: 1312 RIGQQRIVYTYHLVAKGTPEGPKYCKQAQKDRISELVFACSSRHDKGKEKIAEVVTEDKV 1371
Query: 596 LEEMAQLYNNPSETLINAIIPQPKETELIETFG 628
L+ M Q ++ + + +I QPKE +L+E F
Sbjct: 1372 LDTMVQ--HSKLGDMFDNLIVQPKEADLVEGFS 1402
>gi|357129269|ref|XP_003566287.1| PREDICTED: uncharacterized protein LOC100833676 [Brachypodium
distachyon]
Length = 1181
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 299/666 (44%), Positives = 407/666 (61%), Gaps = 57/666 (8%)
Query: 4 IKDIDPPFATSPSRRAEWREYNNV-DPSFLDDLNSRDSGFDSQT-GCDPFTHAQGTVWEL 61
I+ + P ++ + ++ WR + + D DL + D Q+ G P+ GTVW+L
Sbjct: 529 IRFVLPSMVSNYAEKSAWRNSSCLKDALMYHDLCEQAGSIDGQSQGFHPY----GTVWDL 584
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P + M+ HQRE FEF+W N+ G I LDELK+ GC+I HAPGTGKT L +
Sbjct: 585 IPGAI-NTMYQHQREAFEFMWTNLVGDIRLDELKHGAKPDVVGGCVICHAPGTGKTRLAI 643
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
VF+Q YMK+ P CRPVIIAPR ML WEEEFKKW +++PF+ LN E SGKE+ L+
Sbjct: 644 VFIQTYMKVFPDCRPVIIAPRGMLFAWEEEFKKWDVNVPFHILNTTEYSGKEDRDICRLI 703
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG-------DELSGILLDLPG 234
R L R VKL SW G GILG+SY L+ KL S +++ ILL+ PG
Sbjct: 704 KKEHRTDK---LTRLVKLLSWNKGHGILGISYGLYMKLTSEKSVCTEENKVRSILLENPG 760
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294
L V DEGHTPRN+ + M+K L ++KT +RIILSGTPFQNNF EL N L LVR FGE+
Sbjct: 761 LLVLDEGHTPRNERSVMWKTLGKVKTEKRIILSGTPFQNNFLELYNILCLVRPRFGEMFL 820
Query: 295 TVRKSGRE--ISKAKH------------ASLISSIGRCANHRDDEKLKELKEKIAPFVNV 340
T K GR +SK + ASL S++ D+ ++++ + PFV++
Sbjct: 821 TKTKVGRRHYVSKKQRDKFSDKYEKGVWASLTSNVT-------DDNAEKVRSILKPFVHI 873
Query: 341 HKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSF--VELNYCVSLLSVHPSLLPQ 398
H GT+L+ +LPGLR SV++L+P QK + + VE + S E Y +SL S HPSL+
Sbjct: 874 HNGTILR-TLPGLRESVIVLKPPPLQKSIIRKVENIGSGNNFEHEYVISLASTHPSLVTA 932
Query: 399 QFF---ESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIM 453
E+ +D L RL+ +P G+KTRF++ ++ L + EKVL+FSQ+I+PL LI
Sbjct: 933 INMSDEEASLIDKPMLERLRSNPYEGVKTRFVIEVVRLCEALKEKVLIFSQFIQPLELIK 992
Query: 454 EQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
E LR F WREG+E+L MDGK + RQ+SI V N+P S AR++LAST+ACCEGI+L GA
Sbjct: 993 EHLRKFFKWREGKEILQMDGKILPRYRQNSIEVFNNPDSDARVLLASTRACCEGISLTGA 1052
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
SRVVLLDVVWNP V RQAISRA+R+GQK+ V+ Y+LIT T E DK RQA K S +V
Sbjct: 1053 SRVVLLDVVWNPAVGRQAISRAFRIGQKKFVYTYNLITYGTGEGDKYDRQAEKDHLSKLV 1112
Query: 574 FPSSDGGGNDQTTASEP---------LEDKILEEMAQLYNNPSETLINAIIPQPKETELI 624
F + D N + S+ +DK+LEE+A ++ + + I P E+ ++
Sbjct: 1113 FSAEDEFNNVRNMLSKAEMEHCSKLISQDKVLEEIAS--HDQLKGMFLKIHYPPTESNIV 1170
Query: 625 ETFGEF 630
T+ +
Sbjct: 1171 FTYNQI 1176
>gi|242087829|ref|XP_002439747.1| hypothetical protein SORBIDRAFT_09g019410 [Sorghum bicolor]
gi|241945032|gb|EES18177.1| hypothetical protein SORBIDRAFT_09g019410 [Sorghum bicolor]
Length = 1535
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 289/627 (46%), Positives = 387/627 (61%), Gaps = 55/627 (8%)
Query: 45 QTGCD----PFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTST 100
QTG D H GTVW+L+ V M+ HQRE FEF+W N+ GGI LDELK+
Sbjct: 920 QTGSDIEQISDLHQYGTVWDLIS-GVISTMYEHQREAFEFMWTNLVGGIRLDELKHGAKP 978
Query: 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIP 160
GC+I HAPGTGKT L +VF+Q YMK+ P CRPVIIAPR ML W+EEFKKW +D+P
Sbjct: 979 DVVGGCVICHAPGTGKTRLAIVFIQTYMKVFPDCRPVIIAPRGMLFAWDEEFKKWNVDVP 1038
Query: 161 FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV 220
F+ +N + +GKE+ L+ R L R VKL SW G GILG+SY L+ KL
Sbjct: 1039 FHIMNTTDYTGKEDREICKLIKKEHRTEK---LTRLVKLLSWNKGHGILGISYGLYTKLT 1095
Query: 221 SG-------DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQN 273
S +++ ILLD PGL V DEGHTPRN+ + M+K L ++KT +RIILSGTPFQN
Sbjct: 1096 SEKPGCTEENKVRSILLDNPGLLVLDEGHTPRNERSIMWKTLGKLKTEKRIILSGTPFQN 1155
Query: 274 NFQELENTLSLVRQEFGEVLRTVRKSGRE--ISKAKH------------ASLISSIGRCA 319
NF EL N L LVR FGE+ T + GR +SK + ASL S++
Sbjct: 1156 NFLELYNILCLVRPRFGEMFLTKGRVGRRHYVSKKQKDKFSDKYEKGVWASLTSNVT--- 1212
Query: 320 NHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKS- 378
D+ ++++ + PFV++H G +L+ +LPGLR SV+IL+P QK + + VE + S
Sbjct: 1213 ----DDNAEKVRSILKPFVHIHNGNILR-TLPGLRESVIILKPLPLQKSIIRKVENIGSG 1267
Query: 379 -FVELNYCVSLLSVHPSLLPQQFF---ESFDVDSAKLARLKLDPEAGIKTRFLLILLEL- 433
E Y +SL S HPSL+ E+ +D L +L+ +P G+KTRF++ ++ L
Sbjct: 1268 NNFEHEYVISLASTHPSLVTAINMSEEEASLIDKHMLGKLRSNPYEGVKTRFVMEVVRLC 1327
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+ EKVL+FSQYI+PL LI E LR F WREG+E+L MDGK + RQ+SI N+P++
Sbjct: 1328 EALREKVLIFSQYIQPLELIKEHLRKFFKWREGKEILQMDGKILPRYRQASIEAFNNPNN 1387
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
++R++LAST+ACCEGI+L GASRVVLLDVVWNP V RQAISRA+R+GQK+ V+ Y+LIT
Sbjct: 1388 ESRVLLASTRACCEGISLTGASRVVLLDVVWNPAVGRQAISRAFRIGQKKFVYTYNLITY 1447
Query: 553 ETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEP---------LEDKILEEMAQLY 603
T E DK RQA K S +VF + D N + S EDK+LEEM
Sbjct: 1448 GTGEGDKYDRQAEKDHLSKLVFSTEDEFNNVRNMLSRAEMDHCSKLISEDKVLEEMTS-- 1505
Query: 604 NNPSETLINAIIPQPKETELIETFGEF 630
++ + + I P E+ ++ T+ +
Sbjct: 1506 HDQLKGMFLKIHYPPTESNIVYTYNQI 1532
>gi|159164911|gb|ABV80240.2| mutant required to maintain repression 1 [Zea mays]
Length = 1435
Score = 513 bits (1321), Expect = e-142, Method: Compositional matrix adjust.
Identities = 281/584 (48%), Positives = 369/584 (63%), Gaps = 49/584 (8%)
Query: 53 HAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAP 112
H GTVW L+P V M+ HQRE FEF+W N+ G I LDE+K+ GC+I HAP
Sbjct: 832 HQYGTVWNLIP-GVISTMYEHQREAFEFMWTNLVGDIRLDEIKHGAKPDVVGGCVICHAP 890
Query: 113 GTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGK 172
GTGKT L +VF+Q YMK+ P CRPVIIAPR ML W+EEFKKW +D+PF+ LN + +GK
Sbjct: 891 GTGKTRLAIVFIQTYMKVFPDCRPVIIAPRGMLFAWDEEFKKWNVDVPFHILNTTDYTGK 950
Query: 173 ENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG-------DEL 225
E+ L+ R L R VKL SW G GILG+SY L+ KL S +++
Sbjct: 951 EDRDICKLIKKEHRTEK---LTRLVKLLSWNKGHGILGISYGLYTKLTSEKPGCTEENKV 1007
Query: 226 SGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
ILLD PGL V DEGHTPRN+ + M+K L +KT +RIILSGTPFQNNF EL N L LV
Sbjct: 1008 RSILLDNPGLLVLDEGHTPRNERSVMWKTLGNVKTEKRIILSGTPFQNNFLELYNILCLV 1067
Query: 286 RQEFGEVLRTVRKSGRE--ISKAKH------------ASLISSIGRCANHRDDEKLKELK 331
R FGE+ T + GR +SK + ASL S++ D+ ++++
Sbjct: 1068 RPRFGEMFLTKSRVGRRHYVSKKQKDKFSDKYEKGVWASLTSNVT-------DDNAEKVR 1120
Query: 332 EKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSF--VELNYCVSLL 389
+ PFV++H G +L+ +LPGLR SV+IL+P QK + K VE + S E Y +SL
Sbjct: 1121 SILKPFVHIHNGNILR-TLPGLRESVIILKPLPLQKSIIKKVENIGSGNNFEHEYVISLA 1179
Query: 390 SVHPSLLPQQFF---ESFDVDSAKLARLKLDPEAGIKTRFLLILLELST--NEKVLVFSQ 444
S HPSL+ E+ +D LA+++ +P G+KTRF++ ++ LS EKVL+FSQ
Sbjct: 1180 STHPSLVTAINMSEEEASLIDKPMLAKVRSNPYEGVKTRFVIEVVRLSEALREKVLIFSQ 1239
Query: 445 YIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKAC 504
+I+PL LI E LR F WREG+E+L MDGK + RQ+SI N+P++ +R++LAST+AC
Sbjct: 1240 FIQPLELIKEHLRKFFKWREGKEILQMDGKILPRYRQASIEAFNNPNNDSRVLLASTRAC 1299
Query: 505 CEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQA 564
CEGI+L GASR+VLLDVVWNP V RQAISRA+R+GQK+ V+ Y+LIT T E DK RQA
Sbjct: 1300 CEGISLTGASRIVLLDVVWNPVVGRQAISRAFRIGQKKFVYTYNLITYGTGEGDKYDRQA 1359
Query: 565 RKVWWSNMVFPSSDGGGNDQTTASEP---------LEDKILEEM 599
K S +VF + D N + S+ EDK+LEEM
Sbjct: 1360 EKDHLSKLVFSTEDEFNNVRNMLSKAEMEHCSKFISEDKVLEEM 1403
>gi|159164908|gb|ABV80237.2| required to maintain repression 1 [Zea mays]
gi|159164910|gb|ABV80239.2| required to maintain repression 1 [Zea mays]
Length = 1435
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 281/584 (48%), Positives = 369/584 (63%), Gaps = 49/584 (8%)
Query: 53 HAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAP 112
H GTVW L+P V M+ HQRE FEF+W N+ G I LDE+K+ GC+I HAP
Sbjct: 832 HQYGTVWNLIP-GVISTMYEHQREAFEFMWTNLVGDIRLDEIKHGAKPDVVGGCVICHAP 890
Query: 113 GTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGK 172
GTGKT L +VF+Q YMK+ P CRPVIIAPR ML W+EEFKKW +D+PF+ LN + +GK
Sbjct: 891 GTGKTRLAIVFIQTYMKVFPDCRPVIIAPRGMLFAWDEEFKKWNVDVPFHILNTTDYTGK 950
Query: 173 ENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG-------DEL 225
E+ L+ R L R VKL SW G GILG+SY L+ KL S +++
Sbjct: 951 EDRDICKLIKKEHRTEK---LTRLVKLLSWNKGHGILGISYGLYTKLTSEKPGCTEENKV 1007
Query: 226 SGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
ILLD PGL V DEGHTPRN+ + M+K L +KT +RIILSGTPFQNNF EL N L LV
Sbjct: 1008 RSILLDNPGLLVLDEGHTPRNERSVMWKTLGNVKTEKRIILSGTPFQNNFLELYNILCLV 1067
Query: 286 RQEFGEVLRTVRKSGRE--ISKAKH------------ASLISSIGRCANHRDDEKLKELK 331
R FGE+ T + GR +SK + ASL S++ D+ ++++
Sbjct: 1068 RPRFGEMFLTKSRVGRRHYVSKKQKDKFSDKYEKGVWASLTSNVT-------DDNAEKVR 1120
Query: 332 EKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSF--VELNYCVSLL 389
+ PFV++H G +L+ +LPGLR SV+IL+P QK + K VE + S E Y +SL
Sbjct: 1121 SILKPFVHIHNGNILR-TLPGLRESVIILKPLPLQKSIIKKVENIGSGNNFEHEYVISLA 1179
Query: 390 SVHPSLLPQQFF---ESFDVDSAKLARLKLDPEAGIKTRFLLILLELST--NEKVLVFSQ 444
S HPSL+ E+ +D LA+++ +P G+KTRF++ ++ LS EKVL+FSQ
Sbjct: 1180 STHPSLVTAINMSEEEASLIDKPMLAKVRSNPYEGVKTRFVIEVVRLSEALREKVLIFSQ 1239
Query: 445 YIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKAC 504
+I+PL LI E LR F WREG+E+L MDGK + RQ+SI N+P++ +R++LAST+AC
Sbjct: 1240 FIQPLELIKEHLRKFFKWREGKEILQMDGKILPRYRQASIEAFNNPNNDSRVLLASTRAC 1299
Query: 505 CEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQA 564
CEGI+L GASR+VLLDVVWNP V RQAISRA+R+GQK+ V+ Y+LIT T E DK RQA
Sbjct: 1300 CEGISLTGASRIVLLDVVWNPAVGRQAISRAFRIGQKKFVYTYNLITYGTGEGDKYDRQA 1359
Query: 565 RKVWWSNMVFPSSDGGGNDQTTASEP---------LEDKILEEM 599
K S +VF + D N + S+ EDK+LEEM
Sbjct: 1360 EKDHLSKLVFSTEDEFNNVRNMLSKAEMEHCSKFISEDKVLEEM 1403
>gi|159164909|gb|ABV80238.2| required to maintain repression 1 [Zea mays]
gi|413945245|gb|AFW77894.1| required to maintain repression1 [Zea mays]
Length = 1435
Score = 513 bits (1320), Expect = e-142, Method: Compositional matrix adjust.
Identities = 281/584 (48%), Positives = 369/584 (63%), Gaps = 49/584 (8%)
Query: 53 HAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAP 112
H GTVW L+P V M+ HQRE FEF+W N+ G I LDE+K+ GC+I HAP
Sbjct: 832 HQYGTVWNLIP-GVISTMYEHQREAFEFMWTNLVGDIRLDEIKHGAKPDVVGGCVICHAP 890
Query: 113 GTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGK 172
GTGKT L +VF+Q YMK+ P CRPVIIAPR ML W+EEFKKW +D+PF+ LN + +GK
Sbjct: 891 GTGKTRLAIVFIQTYMKVFPDCRPVIIAPRGMLFAWDEEFKKWNVDVPFHILNTTDYTGK 950
Query: 173 ENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG-------DEL 225
E+ L+ R L R VKL SW G GILG+SY L+ KL S +++
Sbjct: 951 EDREICKLIKKEHRTEK---LTRLVKLLSWNKGHGILGISYGLYTKLTSEKPGCTEENKV 1007
Query: 226 SGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
ILLD PGL V DEGHTPRN+ + M+K L +KT +RIILSGTPFQNNF EL N L LV
Sbjct: 1008 RSILLDNPGLLVLDEGHTPRNERSVMWKTLGNVKTEKRIILSGTPFQNNFLELYNILCLV 1067
Query: 286 RQEFGEVLRTVRKSGRE--ISKAKH------------ASLISSIGRCANHRDDEKLKELK 331
R FGE+ T + GR +SK + ASL S++ D+ ++++
Sbjct: 1068 RPRFGEMFLTKSRVGRRHYVSKKQKDKFSDKYEKGVWASLTSNVT-------DDNAEKVR 1120
Query: 332 EKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSF--VELNYCVSLL 389
+ PFV++H G +L+ +LPGLR SV+IL+P QK + K VE + S E Y +SL
Sbjct: 1121 SILKPFVHIHNGNILR-TLPGLRESVIILKPLPLQKSIIKKVENIGSGNNFEHEYVISLA 1179
Query: 390 SVHPSLLPQQFF---ESFDVDSAKLARLKLDPEAGIKTRFLLILLELST--NEKVLVFSQ 444
S HPSL+ E+ +D LA+++ +P G+KTRF++ ++ LS EKVL+FSQ
Sbjct: 1180 STHPSLVTAINMSEEEASLIDKPMLAKVRSNPYEGVKTRFVIEVVRLSEALREKVLIFSQ 1239
Query: 445 YIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKAC 504
+I+PL LI E LR F WREG+E+L MDGK + RQ+SI N+P++ +R++LAST+AC
Sbjct: 1240 FIQPLELIKEHLRKFFKWREGKEILQMDGKILPRYRQASIEAFNNPNNDSRVLLASTRAC 1299
Query: 505 CEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQA 564
CEGI+L GASR+VLLDVVWNP V RQAISRA+R+GQK+ V+ Y+LIT T E DK RQA
Sbjct: 1300 CEGISLTGASRIVLLDVVWNPAVGRQAISRAFRIGQKKFVYTYNLITYGTGEGDKYDRQA 1359
Query: 565 RKVWWSNMVFPSSDGGGNDQTTASEP---------LEDKILEEM 599
K S +VF + D N + S+ EDK+LEEM
Sbjct: 1360 EKDHLSKLVFSTEDEFNNVRNMLSKAEMEHCSKFISEDKVLEEM 1403
>gi|356524441|ref|XP_003530837.1| PREDICTED: uncharacterized protein LOC100806733 [Glycine max]
Length = 1175
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 279/601 (46%), Positives = 390/601 (64%), Gaps = 37/601 (6%)
Query: 51 FTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISH 110
++H +GTVW+L+P D+++ +FPHQ+EGFEFIW ++AG IDL ELK G GCIISH
Sbjct: 586 WSHNEGTVWDLIP-DIKESLFPHQQEGFEFIWTSLAGTIDLAELKRVDMHTEG-GCIISH 643
Query: 111 APGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELS 170
APGTGKT LT+VFLQ Y++L P+C P+IIAP ++LLTWE+E +KW + IPF+NLN ELS
Sbjct: 644 APGTGKTKLTMVFLQTYLQLFPKCLPIIIAPANILLTWEDELRKWNLGIPFHNLNNAELS 703
Query: 171 GKENN-GAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG------- 222
G E + V L N+++ + IR VKL SW IL +SY L+E+L G
Sbjct: 704 GNEQDINEVDLSGNQRQNKDA---IRMVKLCSWYKEKSILLISYHLYERLARGLTREYIE 760
Query: 223 DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
+ +L D PGL + DEGHTPRN + ++K LS ++++R++LSGTPFQNNF EL N L
Sbjct: 761 TAMGKVLRDYPGLLILDEGHTPRNQRSYIWKVLSESRSQKRVLLSGTPFQNNFLELYNIL 820
Query: 283 SLVR--------QEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKI 334
L++ QE + ++ + R+ SK I S G A DEK+K+LK +
Sbjct: 821 CLMKPSFPDSIPQELKKFCQSRLRKERKASKYASYEPIYS-GNSA----DEKIKQLKSLM 875
Query: 335 APFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPS 394
PFV+VHKG++LQ++LPGLR V++L+PD Q+ ++ ++ + + ++L+SVHPS
Sbjct: 876 NPFVHVHKGSILQKNLPGLRDCVLVLKPDRLQQETLDIIDSSQNILNFEHKLALVSVHPS 935
Query: 395 LLPQQFF---ESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPL 449
L E +D +L +L+L+P G+KT FLL L+ L + NEKVLVFSQ+I+ L
Sbjct: 936 LFLNCSLSKKEESVLDKDQLEKLRLNPYVGVKTNFLLELVRLCDAVNEKVLVFSQFIDTL 995
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509
LI +QL F+W G EVLYM GK D K++QS I+ ND +S+A+++LAS KA EGIN
Sbjct: 996 CLIKDQLESAFHWSVGTEVLYMYGKLDQKQKQSLIHSFNDTNSKAKVLLASIKASSEGIN 1055
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
L+GASRVVLLDVVWNP VERQAI RAYRLGQK+VV+ YHL+ +T E K +QA K
Sbjct: 1056 LIGASRVVLLDVVWNPSVERQAICRAYRLGQKKVVYTYHLLAQDTPECIKFCKQAEKDRL 1115
Query: 570 SNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSETLINAIIPQPKETELIETFGE 629
S +VF + + + + LED +L+ M Q + + + ++ QPKE + FG+
Sbjct: 1116 SELVFSNKNAKSDKLNSCGAALEDAVLDIMVQ--HEKLKDMFGELLVQPKERD----FGD 1169
Query: 630 F 630
F
Sbjct: 1170 F 1170
>gi|159164912|gb|ABV80241.2| mutant required to maintain repression 1 [Zea mays]
Length = 1435
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 281/584 (48%), Positives = 368/584 (63%), Gaps = 49/584 (8%)
Query: 53 HAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAP 112
H GTVW L+P V M+ HQRE FEF+W N+ G I LDE+K+ GC+I HAP
Sbjct: 832 HQYGTVWNLIP-GVISTMYEHQREAFEFMWTNLVGDIRLDEIKHGAKPDVVGGCVICHAP 890
Query: 113 GTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGK 172
GTGKT L +VF+Q YMK+ P CRPVIIAPR ML W+EEFKKW +D+PF+ LN + +GK
Sbjct: 891 GTGKTRLAIVFIQTYMKVFPDCRPVIIAPRGMLFAWDEEFKKWNVDVPFHILNTTDYTGK 950
Query: 173 ENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG-------DEL 225
E+ L+ R L R VKL SW G GILG+SY L+ KL S +++
Sbjct: 951 EDRDICKLIKKEHRTEK---LTRLVKLLSWNKGHGILGISYGLYTKLTSEKPGCTEENKV 1007
Query: 226 SGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
ILLD PGL V DEGHTPRN+ M+K L +KT +RIILSGTPFQNNF EL N L LV
Sbjct: 1008 RSILLDNPGLLVLDEGHTPRNERNVMWKTLGNVKTEKRIILSGTPFQNNFLELYNILCLV 1067
Query: 286 RQEFGEVLRTVRKSGRE--ISKAKH------------ASLISSIGRCANHRDDEKLKELK 331
R FGE+ T + GR +SK + ASL S++ D+ ++++
Sbjct: 1068 RPRFGEMFLTKSRVGRRHYVSKKQKDKFSDKYEKGVWASLTSNVT-------DDNAEKVR 1120
Query: 332 EKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSF--VELNYCVSLL 389
+ PFV++H G +L+ +LPGLR SV+IL+P QK + K VE + S E Y +SL
Sbjct: 1121 SILKPFVHIHNGNILR-TLPGLRESVIILKPLPLQKSIIKKVENIGSGNNFEHEYVISLA 1179
Query: 390 SVHPSLLPQQFF---ESFDVDSAKLARLKLDPEAGIKTRFLLILLELST--NEKVLVFSQ 444
S HPSL+ E+ +D LA+++ +P G+KTRF++ ++ LS EKVL+FSQ
Sbjct: 1180 STHPSLVTAINMSEEEASLIDKPMLAKVRSNPYEGVKTRFVIEVVRLSEALREKVLIFSQ 1239
Query: 445 YIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKAC 504
+I+PL LI E LR F WREG+E+L MDGK + RQ+SI N+P++ +R++LAST+AC
Sbjct: 1240 FIQPLELIKEHLRKFFKWREGKEILQMDGKILPRYRQASIEAFNNPNNDSRVLLASTRAC 1299
Query: 505 CEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQA 564
CEGI+L GASR+VLLDVVWNP V RQAISRA+R+GQK+ V+ Y+LIT T E DK RQA
Sbjct: 1300 CEGISLTGASRIVLLDVVWNPAVGRQAISRAFRIGQKKFVYTYNLITYGTGEGDKYDRQA 1359
Query: 565 RKVWWSNMVFPSSDGGGNDQTTASEP---------LEDKILEEM 599
K S +VF + D N + S+ EDK+LEEM
Sbjct: 1360 EKDHLSKLVFSTEDEFNNVRNMLSKAEMEHCSKFISEDKVLEEM 1403
>gi|222631484|gb|EEE63616.1| hypothetical protein OsJ_18433 [Oryza sativa Japonica Group]
Length = 1364
Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust.
Identities = 294/665 (44%), Positives = 406/665 (61%), Gaps = 55/665 (8%)
Query: 4 IKDIDPPFATSPSRRAEWREYNNVDPSFL-DDLNSRDSGFDSQTGCDPFTHAQGTVWELV 62
I+ I P A++ + + WR + + + + DL + D Q+ F H GTVW+L+
Sbjct: 712 IRFILPLLASNFAEKPAWRNSSCLKTALMCPDLYEQTGTGDGQS--QDF-HINGTVWDLI 768
Query: 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLV 122
P V M+ HQRE FEF+W N+ G I L+E+K+ GC+I HAPGTGKT L +V
Sbjct: 769 P-GVITDMYQHQREAFEFMWTNLVGDIRLNEIKHGAKPDVVGGCVICHAPGTGKTRLAIV 827
Query: 123 FLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
F+Q YMK+ P CRPVIIAPR ML WE+EFKKW +++PF+ +N + SGKE+ L+
Sbjct: 828 FIQTYMKVFPDCRPVIIAPRGMLFAWEQEFKKWNVNVPFHIMNTTDYSGKEDRDICRLIK 887
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG-------DELSGILLDLPGL 235
R L R VKL+SW G G+LG+SY L+ KL S +++ ILL+ PGL
Sbjct: 888 KEHRTEK---LTRLVKLFSWNRGHGVLGISYGLYMKLTSEKVGCTGENKVRTILLENPGL 944
Query: 236 FVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRT 295
V DEGHTPRN+ + ++K L ++KT +RIILSGTPFQNNF EL N L LVR FGE+ T
Sbjct: 945 LVLDEGHTPRNERSVIWKTLGKVKTEKRIILSGTPFQNNFLELYNILCLVRPRFGEMFLT 1004
Query: 296 VRKSGRE--ISKAKH------------ASLISSIGRCANHRDDEKLKELKEKIAPFVNVH 341
+ GR +SK + ASL S++ D+ ++++ + PFV++H
Sbjct: 1005 KTRVGRRHCVSKKQRDKFSDKYEKGVWASLTSNV-------TDDNAEKVRSILKPFVHIH 1057
Query: 342 KGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSF--VELNYCVSLLSVHPSLLPQQ 399
GT+L+ +LPGLR V++L+P QK + + VE V S E Y +SL S HPSL+
Sbjct: 1058 NGTILR-TLPGLRECVIVLKPLPLQKSIIRKVENVGSGNNFEHEYVISLASTHPSLVNAI 1116
Query: 400 FF---ESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIME 454
E+ +D L RL+ +P G+KTRF++ ++ L + EKVL+FSQ+I+PL LI E
Sbjct: 1117 NMTEEEASLIDKPMLERLRSNPYEGVKTRFVMEVVRLCEALKEKVLIFSQFIQPLELIKE 1176
Query: 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGAS 514
LR F WREG+E+L MDGK + RQ+SI V N+P S AR++LAST+ACCEGI+L GAS
Sbjct: 1177 HLRKIFKWREGKEILQMDGKILPRYRQNSIEVFNNPDSDARVLLASTRACCEGISLTGAS 1236
Query: 515 RVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVF 574
RVVLLDVVWNP V RQAISRA+R+GQK+ V+ Y+LIT T E DK RQA K S +VF
Sbjct: 1237 RVVLLDVVWNPAVGRQAISRAFRIGQKKFVYTYNLITYGTGEGDKYDRQAEKDHLSKLVF 1296
Query: 575 PSSDGGGNDQTTASEP---------LEDKILEEMAQLYNNPSETLINAIIPQPKETELIE 625
+ D N + S+ EDK+LEEM ++ + + I P E+ ++
Sbjct: 1297 STEDEFSNVRNMLSKAEMEHCSKLISEDKVLEEMTS--HDQLKGMFLKIHYPPTESNIVF 1354
Query: 626 TFGEF 630
T+ +
Sbjct: 1355 TYNQI 1359
>gi|159164914|gb|ABV80243.2| mutant required to maintain repression 1 [Zea mays]
Length = 1435
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 280/584 (47%), Positives = 368/584 (63%), Gaps = 49/584 (8%)
Query: 53 HAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAP 112
H GTVW L+P V M+ HQRE FEF+W N+ G I LDE+K+ GC+I HAP
Sbjct: 832 HQYGTVWNLIP-GVISTMYEHQREAFEFMWTNLVGDIRLDEIKHGAKPDVVGGCVICHAP 890
Query: 113 GTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGK 172
GTGKT L +VF+Q YMK+ P CRPVIIAPR ML W+EEFKKW +D+PF+ LN + +GK
Sbjct: 891 GTGKTRLAIVFIQTYMKVFPDCRPVIIAPRGMLFAWDEEFKKWNVDVPFHILNTTDYTGK 950
Query: 173 ENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG-------DEL 225
E+ L+ R L R VKL SW G GILG+SY L+ KL S +++
Sbjct: 951 EDRDICKLIKKEHRTEK---LTRLVKLLSWNKGHGILGISYGLYTKLTSEKPGCTEENKV 1007
Query: 226 SGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
ILLD PGL V DEGHTPRN+ + M+K L +KT +RIILS TPFQNNF EL N L LV
Sbjct: 1008 RSILLDNPGLLVLDEGHTPRNERSVMWKTLGNVKTEKRIILSRTPFQNNFLELYNILCLV 1067
Query: 286 RQEFGEVLRTVRKSGRE--ISKAKH------------ASLISSIGRCANHRDDEKLKELK 331
R FGE+ T + GR +SK + ASL S++ D+ ++++
Sbjct: 1068 RPRFGEMFLTKSRVGRRHYVSKKQKDKFSDKYEKGVWASLTSNVT-------DDNAEKVR 1120
Query: 332 EKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSF--VELNYCVSLL 389
+ PFV++H G +L+ +LPGLR SV+IL+P QK + K VE + S E Y +SL
Sbjct: 1121 SILKPFVHIHNGNILR-TLPGLRESVIILKPLPLQKSIIKKVENIGSGNNFEHEYVISLA 1179
Query: 390 SVHPSLLPQQFF---ESFDVDSAKLARLKLDPEAGIKTRFLLILLELST--NEKVLVFSQ 444
S HPSL+ E+ +D LA+++ +P G+KTRF++ ++ LS EKVL+FSQ
Sbjct: 1180 STHPSLVTAINMSEEEASLIDKPMLAKVRSNPYEGVKTRFVIEVVRLSEALREKVLIFSQ 1239
Query: 445 YIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKAC 504
+I+PL LI E LR F WREG+E+L MDGK + RQ+SI N+P++ +R++LAST+AC
Sbjct: 1240 FIQPLELIKEHLRKFFKWREGKEILQMDGKILPRYRQASIEAFNNPNNDSRVLLASTRAC 1299
Query: 505 CEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQA 564
CEGI+L GASR+VLLDVVWNP V RQAISRA+R+GQK+ V+ Y+LIT T E DK RQA
Sbjct: 1300 CEGISLTGASRIVLLDVVWNPAVGRQAISRAFRIGQKKFVYTYNLITYGTGEGDKYDRQA 1359
Query: 565 RKVWWSNMVFPSSDGGGNDQTTASEP---------LEDKILEEM 599
K S +VF + D N + S+ EDK+LEEM
Sbjct: 1360 EKDHLSKLVFSTEDEFNNVRNMLSKAEMEHCSKFISEDKVLEEM 1403
>gi|356544277|ref|XP_003540580.1| PREDICTED: uncharacterized protein LOC100812737 [Glycine max]
Length = 1096
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 304/659 (46%), Positives = 410/659 (62%), Gaps = 53/659 (8%)
Query: 4 IKDIDPPFATSP--SRRAEWREYNNVDPSFLDDLNSRDSGFDSQTGCDPFTHAQGTVWEL 61
IK I PPF S RR N F DL + D G DS+ ++H +GTVW+L
Sbjct: 456 IKYITPPFVDSERCCRRVSSGGGNT--SQFDGDLFN-DPGDDSEA---VWSHNEGTVWDL 509
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P D+++ ++PHQ+EGFEFIW N+AG DL +LK G GCI+SHAPGTGKT LT+
Sbjct: 510 IP-DIKQSLYPHQQEGFEFIWTNLAGTTDLAKLKRVDPCSEG-GCIVSHAPGTGKTRLTM 567
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKEN-NGAVAL 180
VFLQ Y++ P+C P+IIAP ++LLTWE+E +KW I IPF+NLN ELSGKE V
Sbjct: 568 VFLQTYLQSFPKCLPIIIAPANILLTWEDELRKWNIGIPFHNLNNSELSGKEKLINEVDW 627
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV-SGDELSG------------ 227
N+K+ + IR VKL SW IL +SY L+EKL S E G
Sbjct: 628 SGNQKQNKD---AIRMVKLCSWYKEKSILLISYNLYEKLAGSTAEGDGKKEKKNNKMKKK 684
Query: 228 ---ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
+L D PGL V DEGHTPRN ++ ++K LS +T++RI+LSGTPFQNNF EL N L L
Sbjct: 685 KKRVLRDYPGLLVLDEGHTPRNQNSYIWKVLSESRTKKRILLSGTPFQNNFLELYNILCL 744
Query: 285 VRQEFGEVL-RTVRK--SGREISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPF 337
++ F + + + ++K R++ + K S +SS G A DEK+K LK + PF
Sbjct: 745 MKPSFPDSIPQELKKFCQSRQMQERKDVSWDWEPVSS-GNTA----DEKIKLLKLLMNPF 799
Query: 338 VNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLP 397
V+VHKG++LQ++LPGLR V++L+PD Q+ +++E +S + + ++L+SVHPSL
Sbjct: 800 VHVHKGSILQKNLPGLRDCVLVLKPDILQQETLESIEYSQSALNFEHKLALVSVHPSLFL 859
Query: 398 QQFF---ESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLI 452
E VD KL +L+L+P G+KT+FL + L + NEKVL+FSQ+I+ L LI
Sbjct: 860 NCSLSKKEESVVDKGKLEKLRLNPYGGVKTKFLFEFIRLCDAVNEKVLIFSQFIDTLCLI 919
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
+QL FNW G EVLYM GK D K++QS I ND +SQA+++LAS KA EGINL+G
Sbjct: 920 KDQLESAFNWSVGTEVLYMYGKLDHKQKQSLIRSFNDSNSQAKVLLASIKASSEGINLIG 979
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNM 572
ASRVVLLDVVWNP VERQAI RAYRLGQKRVV YHL+ T E K +QA K S +
Sbjct: 980 ASRVVLLDVVWNPSVERQAICRAYRLGQKRVVFTYHLLAQGTPECTKYCKQAEKNRLSEL 1039
Query: 573 VFPSSDGGGNDQTTAS---EPLEDKILEEMAQLYNNPSETLINAIIPQPKETELIETFG 628
VF + + + ++ E +ED++L+ M Q + + + + QPKE +ET G
Sbjct: 1040 VFSNRNAESHKLKSSGVMLEDIEDRVLDLMVQ--HKKLKDMFGECLVQPKE-RYLETLG 1095
>gi|356524443|ref|XP_003530838.1| PREDICTED: uncharacterized protein LOC100807262 [Glycine max]
Length = 1180
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 288/641 (44%), Positives = 402/641 (62%), Gaps = 41/641 (6%)
Query: 4 IKDIDPPFATSPSRRAE-----WREYNNVDPSFLDDLNSRDSGFDSQTGCDPFTHAQGTV 58
IK I PPF S E W+ S D D G DS ++H +GTV
Sbjct: 553 IKYIMPPFVDSKRSGREAFPGAWK------TSQFDGATFDDCGDDSGAA---WSHNEGTV 603
Query: 59 WELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
W+++ D++K +FPHQ+EGFEFIW ++AG +L ELK G GCIISHAPGTGKT
Sbjct: 604 WDIIS-DIKKGLFPHQQEGFEFIWTSLAGTTNLAELKR-VDPGTEGGCIISHAPGTGKTK 661
Query: 119 LTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV 178
LT+VFLQ Y++L P+C PVIIAP ++LLTWE+E +KW I IPF+NLN ELSGKEN
Sbjct: 662 LTMVFLQTYLQLFPKCLPVIIAPANILLTWEDELRKWNIGIPFHNLNNAELSGKEN---- 717
Query: 179 ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG---------IL 229
+++ IR +KL SW IL +SY L+EKL G G +L
Sbjct: 718 -VINEFGYQELNKDAIRMLKLCSWYKEKSILLISYNLYEKLAGGKSEDGASIETAMGKVL 776
Query: 230 LDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF 289
D PGL V DEGHTPRN +C++K LS ++++RI+LSGTPFQNNF EL N L++ F
Sbjct: 777 RDYPGLLVLDEGHTPRNQRSCIWKVLSESRSQKRILLSGTPFQNNFLELFNIFCLMKPSF 836
Query: 290 GE-VLRTVRK--SGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVL 346
+ + + ++K + I + K + +S + + DEK+K+LK + PFV+VHKG++L
Sbjct: 837 SDNIPQELKKFCQSKLIQERKASKDVSWESINSGNPADEKIKQLKLLMNPFVHVHKGSIL 896
Query: 347 QESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFF---ES 403
Q++L GL+ V+IL+P+ Q+++ ++E ++ + + ++L+SVHPSL E
Sbjct: 897 QKNLLGLQDCVLILKPEILQQKILDSIECSQNGLNFEHKLALVSVHPSLFLNCSLSKKEE 956
Query: 404 FDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQLRHRFN 461
+D +L + +LD G+KT+FL+ + L + +EKVLVFSQ+I+ L LI +QL FN
Sbjct: 957 SVIDMDQLKKCRLDSYEGVKTKFLMEFVNLCDAVDEKVLVFSQFIDTLILIKDQLESAFN 1016
Query: 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDV 521
W EG+EVL+M G+ D K++QS I+ ND +SQA+++LAS KA EGINLVGASRVVLLDV
Sbjct: 1017 WSEGREVLFMHGRVDQKQKQSLIHSFNDANSQAKVLLASIKASSEGINLVGASRVVLLDV 1076
Query: 522 VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGG 581
VWNP VERQAI RAYRLGQK+VV+ YHL+ T E K +QA K S +VF S+
Sbjct: 1077 VWNPSVERQAICRAYRLGQKKVVYTYHLLAQGTPECTKYCKQAEKNRLSELVF-SNRNAE 1135
Query: 582 NDQTTASEPLEDKILEEMAQLYNNPSETLINAIIPQPKETE 622
+D+ S +EDK+L+ M Q + + + + QPKE +
Sbjct: 1136 SDKLKRSGVIEDKVLDAMVQ--HEKLKDIFGECLVQPKEGD 1174
>gi|357130494|ref|XP_003566883.1| PREDICTED: uncharacterized protein LOC100842951 [Brachypodium
distachyon]
Length = 1077
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 264/582 (45%), Positives = 364/582 (62%), Gaps = 40/582 (6%)
Query: 53 HAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAP 112
H G VW+L+P VR+ MFPHQREGFEF+WK +AGGID+ ++K++ +T +GC+ISHAP
Sbjct: 486 HESGLVWDLIP-GVREHMFPHQREGFEFMWKKLAGGIDIQQVKHTVNTDSTSGCVISHAP 544
Query: 113 GTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGK 172
GTGKT L + F+Q+Y++L P CRPVIIAPR ML TWE+EFKKW + +PF+ L+ +
Sbjct: 545 GTGKTRLAITFVQSYLELFPWCRPVIIAPRGMLATWEQEFKKWNVKLPFHLLSSSGIHWD 604
Query: 173 ENNGAVALMDNRKRGRGKVGLIR-------YVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225
E+ L+ + K+ + + +KL SW G+ I+GLSY L+ L G+++
Sbjct: 605 EDKTIKKLVAQDESLGQKLSMNKLSQKSRLMLKLASWYEGSCIIGLSYSLYRNLAKGEDM 664
Query: 226 SG-----ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELEN 280
G +LL PGL V DEGHTPRN + ++K L+ + T +RIILSGTPFQNNF EL N
Sbjct: 665 DGETVRNLLLKNPGLLVLDEGHTPRNKKSLIWKVLAEVSTEKRIILSGTPFQNNFLELYN 724
Query: 281 TLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRD----------------- 323
L LV+ +F R + ++ S + + R +H +
Sbjct: 725 ILCLVKPKFARDFACTRLNKKDFSSKR-----TCQSRATHHLEEDEGKEFWKSLRMSNIT 779
Query: 324 DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVE--GVKSFVE 381
D+ L E++EK+ PFV++H G +LQ+SLPGL+ SVVIL P QK + +E K F++
Sbjct: 780 DDHLSEIREKLDPFVHIHNGDILQKSLPGLKESVVILNPLPHQKEIITMMEKSAGKGFLD 839
Query: 382 LNYCVSLLSVHPSLLPQQFFESFDVDSA-KLARLKLDPEAGIKTRFLLILLELST--NEK 438
Y +SL S+HP LL + KL +LDP G+KTRF+L ++ L E+
Sbjct: 840 AEYKISLASIHPFLLTSVKLSDEEASIVNKLKSSRLDPCEGVKTRFVLEIVRLCKPLKER 899
Query: 439 VLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498
VLVFSQY+EPL+LIM+QL +FNW EG+E+L M G VK+R++ + ND +S+AR+ML
Sbjct: 900 VLVFSQYLEPLSLIMDQLTKKFNWTEGKEILLMSGNVRVKQREALMEAFNDMNSEARVML 959
Query: 499 ASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWD 558
ASTKACCEGI LVG+SRVVLLDVVWNP V RQAI RAYR+GQ+++V+ Y+LI T E
Sbjct: 960 ASTKACCEGITLVGSSRVVLLDVVWNPSVGRQAIGRAYRIGQEKIVYTYNLIAEGTKEKI 1019
Query: 559 KLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMA 600
K RQA+K S ++F T +D+ILE M
Sbjct: 1020 KYDRQAKKDHMSKLLFTKEPQAAGCNLTPELIFDDRILEAMT 1061
>gi|125552219|gb|EAY97928.1| hypothetical protein OsI_19844 [Oryza sativa Indica Group]
Length = 1367
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 274/595 (46%), Positives = 372/595 (62%), Gaps = 50/595 (8%)
Query: 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP 132
HQRE FEF+W N+ G I L+E+K+ GC+I HAPGTGKT L +VF+Q YMK+ P
Sbjct: 781 HQREAFEFMWTNLVGDIRLNEIKHGAKPDVVGGCVICHAPGTGKTRLAIVFIQTYMKVFP 840
Query: 133 RCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVG 192
CRPVIIAPR ML WE+EFKKW +++PF+ +N + SGKE+ L+ R
Sbjct: 841 DCRPVIIAPRGMLFAWEQEFKKWNVNVPFHIMNTTDYSGKEDRDICRLIKKEHRTEK--- 897
Query: 193 LIRYVKLYSWKMGTGILGLSYRLFEKLVSG-------DELSGILLDLPGLFVFDEGHTPR 245
L R VKL+SW G G+LG+SY L+ KL S +++ ILL+ PGL V DEGHTPR
Sbjct: 898 LTRLVKLFSWNRGHGVLGISYGLYMKLTSEKVGCTGENKVRTILLENPGLLVLDEGHTPR 957
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE--I 303
N+ + ++K L ++KT +RIILSGTPFQNNF EL N L LVR FGE+ T + GR +
Sbjct: 958 NERSVIWKTLGKVKTEKRIILSGTPFQNNFLELYNILCLVRPRFGEMFLTKTRVGRRHCV 1017
Query: 304 SKAKH------------ASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLP 351
SK + ASL S++ D+ ++++ + PFV++H GT+L+ +LP
Sbjct: 1018 SKKQRDKFSDKYEKGVWASLTSNV-------TDDNAEKVRSILKPFVHIHNGTILR-TLP 1069
Query: 352 GLRHSVVILQPDEFQKRLCKAVEGVKSF--VELNYCVSLLSVHPSLLPQQFF---ESFDV 406
GLR V++L+P QK + + VE V S E Y +SL S HPSL+ E+ +
Sbjct: 1070 GLRECVIVLKPLPLQKSIIRKVENVGSGNNFEHEYVISLASTHPSLVNAINMTEEEASLI 1129
Query: 407 DSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQLRHRFNWRE 464
D L RL+ +P G+KTRF++ ++ L + EKVL+FSQ+I+PL LI E LR F WRE
Sbjct: 1130 DKPMLERLRSNPYEGVKTRFVMEVVRLCEALKEKVLIFSQFIQPLELIKEHLRKIFKWRE 1189
Query: 465 GQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWN 524
G+E+L MDGK + RQ+SI V N+P S AR++LAST+ACCEGI+L GASRVVLLDVVWN
Sbjct: 1190 GKEILQMDGKILPRYRQNSIEVFNNPDSDARVLLASTRACCEGISLTGASRVVLLDVVWN 1249
Query: 525 PFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQ 584
P V RQAISRA+R+GQK+ V+ Y+LIT T E DK RQA K S +VF + D N +
Sbjct: 1250 PAVGRQAISRAFRIGQKKFVYTYNLITYGTGEGDKYDRQAEKDHLSKLVFSTEDEFSNVR 1309
Query: 585 TTASEP---------LEDKILEEMAQLYNNPSETLINAIIPQPKETELIETFGEF 630
S+ EDK+LEEM ++ + + I P E+ ++ T+ +
Sbjct: 1310 NMLSKAEMEHCSKLISEDKVLEEMTS--HDQLKGMFLKIHYPPTESNIVFTYNQI 1362
>gi|297835518|ref|XP_002885641.1| hypothetical protein ARALYDRAFT_342596 [Arabidopsis lyrata subsp.
lyrata]
gi|297331481|gb|EFH61900.1| hypothetical protein ARALYDRAFT_342596 [Arabidopsis lyrata subsp.
lyrata]
Length = 1122
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 269/594 (45%), Positives = 380/594 (63%), Gaps = 36/594 (6%)
Query: 50 PFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIIS 109
P +GTVW VP ++ ++PHQ+EGFEFIWKN+AG L+EL NS G GCIIS
Sbjct: 548 PLEKTEGTVWRYVP-GIKDTLYPHQQEGFEFIWKNLAGTTKLNEL-NSVGVKGSGGCIIS 605
Query: 110 HAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPEL 169
H GTGKT LT+VFLQ+Y++ P P++IAP S++ TWEEEF+KW +IPFYN+N P+
Sbjct: 606 HKAGTGKTRLTIVFLQSYLERFPDSHPMVIAPASLMRTWEEEFRKWNANIPFYNMNSPQF 665
Query: 170 SGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGI- 228
SG E+ AV+ ++ + IR VKL SW ILG+SY L+EKL + G+
Sbjct: 666 SGHEDVEAVSCLEGDRHHNS----IRMVKLVSWWKQKSILGVSYPLYEKLATNKNAEGMQ 721
Query: 229 -----LLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS 283
L++LPGL V DEGHTPRN ++ ++K L+ ++T +RIILSGT FQNNF+EL N L
Sbjct: 722 VFRRMLVELPGLLVLDEGHTPRNQNSLIWKVLTEVRTEKRIILSGTLFQNNFKELSNVLC 781
Query: 284 LVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
L R + T+ E+ K S G ++ ++ +LK IAPFV+VH+G
Sbjct: 782 LARPACKD---TISSRLHELIKC------SQEGEHGRVNEENRIVDLKAVIAPFVHVHEG 832
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLL----PQQ 399
+LQESL GLR V++L P QK++ ++ +S E + +S +SVHPSL P +
Sbjct: 833 DILQESLLGLRDCVLVLNPPFQQKKILDRIDTSQSTFEFEHKLSAVSVHPSLYLCCNPTK 892
Query: 400 FFESFDVDSAKL---ARLKLDPEAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIME 454
E+ + A L +L+L + G+KT+FL+ + +S EKVLV+SQYI+ L LIME
Sbjct: 893 K-ENLVIGPATLETLKKLRLKYKEGVKTKFLIDFIRISGTMKEKVLVYSQYIDTLKLIME 951
Query: 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGAS 514
QL F+W+EG+E+L+M GK + + RQ I+ N P S ++++LASTKAC EGI+LVGAS
Sbjct: 952 QLSLVFSWKEGEEILFMHGKVEQRDRQHLIDNFNKPDSGSKVLLASTKACSEGISLVGAS 1011
Query: 515 RVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVF 574
RVV+LDVVWNP VE QAISRA+RLGQKR V +YHL+ +T EW+K +Q+ K S +VF
Sbjct: 1012 RVVILDVVWNPSVESQAISRAFRLGQKRAVFIYHLMVKDTSEWNKYCKQSEKHRISELVF 1071
Query: 575 PSSDGGGNDQTTASE-PLEDKILEEMAQLYNNPSETLINAIIPQPKETELIETF 627
S++ D+ +E ED+IL+EM + + + + I+ PKE+++ +F
Sbjct: 1072 SSTN--EKDKPINNEVDSEDRILDEMVR--HEKLKHIFEKILYHPKESDMFTSF 1121
>gi|49387874|dbj|BAD26561.1| SNF2 domain-containing protein-like [Oryza sativa Japonica Group]
Length = 602
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 260/564 (46%), Positives = 367/564 (65%), Gaps = 28/564 (4%)
Query: 56 GTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTG 115
G VW+LVP VR+ MFPHQ+EGFEF+W+ +AGG +++L+N+ +T G GC+ISHAPGTG
Sbjct: 32 GLVWDLVP-GVREDMFPHQQEGFEFMWRKLAGGTSIEQLRNNANTIEG-GCVISHAPGTG 89
Query: 116 KTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENN 175
KT L + F+Q+Y P C PVIIAPR ML TWE+EF+KW + +PF+ LN E++ KE+
Sbjct: 90 KTRLAITFVQSYFAFFPECCPVIIAPRGMLATWEQEFRKWKVKVPFHVLNSKEINWKEDR 149
Query: 176 G--AVALMDN---RKRGRGKVG--LIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG- 227
+A+MD + R K+ R +KL SW+ G+ I+G+SY LF KL + + G
Sbjct: 150 TIKQLAIMDENLAQSLARNKLDHKFRRKLKLASWRKGSSIIGVSYTLFRKLANQSSMDGN 209
Query: 228 ----ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS 283
+LL++P L V DEGHTPRN + ++K L ++T++RIILSGTPFQN+F EL N L
Sbjct: 210 MVRNLLLEMPDLLVLDEGHTPRNKKSLIWKVLEEVRTKKRIILSGTPFQNSFLELSNVLY 269
Query: 284 LVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
L+R +F + KS ++I + + ++ N+ ++K+ E+++ + P V++H G
Sbjct: 270 LIRPKFARHFAS--KSFKKIGLEDYWTSLT-----LNNITEKKIDEIRQILDPIVHIHNG 322
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN--YCVSLLSVHPSLLPQQFF 401
+LQ+SLPGLR SVVIL P QK + A+E + L+ Y +SL S+HP L+
Sbjct: 323 DILQKSLPGLRESVVILNPLPHQKEIITAMENTVTMGTLDAEYKISLASIHPFLVTCAKL 382
Query: 402 ---ESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQL 456
E+ VD + L L+ +P G+KT+F+L ++ L + E+VLVFSQY+EPL+LIM+QL
Sbjct: 383 SEKETSSVDVSLLKSLRPNPCVGVKTKFVLEIVRLCEAMKERVLVFSQYLEPLSLIMDQL 442
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
FNW EG+E+L M G V+ R++ + ND S A++MLASTKACCEGI L+GASRV
Sbjct: 443 SKMFNWIEGEEILLMSGNVLVQNREALMEAFNDMKSNAKVMLASTKACCEGITLIGASRV 502
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPS 576
VLLDVVWNP V RQAI RAYR+GQ+++V+ Y+LIT T E DK RQA+K S ++F
Sbjct: 503 VLLDVVWNPSVGRQAIGRAYRIGQEKIVYTYNLITEGTKEKDKYDRQAKKDHMSKLLFSK 562
Query: 577 SDGGGNDQTTASEPLEDKILEEMA 600
+ DKILE M
Sbjct: 563 EPHAAGFNLSQEVIFNDKILEAMT 586
>gi|125583090|gb|EAZ24021.1| hypothetical protein OsJ_07744 [Oryza sativa Japonica Group]
Length = 1360
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 259/563 (46%), Positives = 365/563 (64%), Gaps = 28/563 (4%)
Query: 56 GTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTG 115
G VW+LVP VR+ MFPHQ+EGFEF+W+ +AGG +++L+N+ +T G GC+ISHAPGTG
Sbjct: 790 GLVWDLVP-GVREDMFPHQQEGFEFMWRKLAGGTSIEQLRNNANTIEG-GCVISHAPGTG 847
Query: 116 KTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENN 175
KT L + F+Q+Y P C PVIIAPR ML TWE+EF+KW + +PF+ LN E++ KE+
Sbjct: 848 KTRLAITFVQSYFAFFPECCPVIIAPRGMLATWEQEFRKWKVKVPFHVLNSKEINWKEDR 907
Query: 176 G--AVALMDNR-----KRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG- 227
+A+MD R + R +KL SW+ G+ I+G+SY LF KL + + G
Sbjct: 908 TIKQLAIMDENLAQSLARNKLDHKFRRKLKLASWRKGSSIIGVSYTLFRKLANQSSMDGN 967
Query: 228 ----ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS 283
+LL++P L V DEGHTPRN + ++K L ++T++RIILSGTPFQN+F EL N L
Sbjct: 968 MVRNLLLEMPDLLVLDEGHTPRNKKSLIWKVLEEVRTKKRIILSGTPFQNSFLELSNVLY 1027
Query: 284 LVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
L+R +F + KS ++I + + ++ N+ ++K+ E+++ + P V++H G
Sbjct: 1028 LIRPKFARHFAS--KSFKKIGLEDYWTSLT-----LNNITEKKIDEIRQILDPIVHIHNG 1080
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN--YCVSLLSVHPSLLPQQFF 401
+LQ+SLPGLR SVVIL P QK + A+E + L+ Y +SL S+HP L+
Sbjct: 1081 DILQKSLPGLRESVVILNPLPHQKEIITAMENTVTMGTLDAEYKISLASIHPFLVTCAKL 1140
Query: 402 ---ESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQL 456
E+ VD + L L+ +P G+KT+F+L ++ L + E+VLVFSQY+EPL+LIM+QL
Sbjct: 1141 SEKETSSVDVSLLKSLRPNPCVGVKTKFVLEIVRLCEAMKERVLVFSQYLEPLSLIMDQL 1200
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
FNW EG+E+L M G V+ R++ + ND S A++MLASTKACCEGI L+GASRV
Sbjct: 1201 SKMFNWIEGEEILLMSGNVLVQNREALMEAFNDMKSNAKVMLASTKACCEGITLIGASRV 1260
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPS 576
VLLDVVWNP V RQAI RAYR+GQ+++V+ Y+LIT T E DK RQA+K S ++F
Sbjct: 1261 VLLDVVWNPSVGRQAIGRAYRIGQEKIVYTYNLITEGTKEKDKYDRQAKKDHMSKLLFSK 1320
Query: 577 SDGGGNDQTTASEPLEDKILEEM 599
+ DKILE M
Sbjct: 1321 EPHAAGFNLSQEVIFNDKILEAM 1343
>gi|218191274|gb|EEC73701.1| hypothetical protein OsI_08293 [Oryza sativa Indica Group]
Length = 1363
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 270/615 (43%), Positives = 386/615 (62%), Gaps = 33/615 (5%)
Query: 4 IKDIDPPFATSPSRRAEWREYNNVDPSFLDDLNSRDSGFDSQTGCDPFTHAQGTVWELVP 63
I+ + P S + R + R+ + +D F D L S +G++ D G VW+LVP
Sbjct: 746 IRFVLPSMVKSCTER-DMRKDHELDLFFDDILTS--AGYEGPR--DFGGQKTGLVWDLVP 800
Query: 64 RDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVF 123
VR+ MFPHQ+EGFEF+W+ +AGG +++L+N+ +T G GC+ISHAPGTGKT L + F
Sbjct: 801 -GVREDMFPHQQEGFEFMWRKLAGGTSIEQLRNNANTIEG-GCVISHAPGTGKTRLAITF 858
Query: 124 LQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNG--AVALM 181
+Q+Y P C PVIIAPR ML TWE+EF+KW + +PF+ LN E++ KE+ +A+M
Sbjct: 859 VQSYFAFFPECCPVIIAPRGMLATWEQEFRKWKVKVPFHVLNSKEINWKEDRTIKQLAIM 918
Query: 182 DNR-----KRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG-----ILLD 231
D R + R +KL SW+ G+ I+G+SY LF KL + + G +LL+
Sbjct: 919 DENLAQSLARNKLDHKFRRKLKLASWRKGSSIIGVSYTLFRKLANQSSMDGNMVRNLLLE 978
Query: 232 LPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGE 291
P L V DEGHTPRN + ++K L ++T++RIILSGTPFQN+F EL N L L+R +F
Sbjct: 979 KPDLLVLDEGHTPRNKKSLIWKVLEEVRTKKRIILSGTPFQNSFLELSNVLYLIRPKFAR 1038
Query: 292 VLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLP 351
+ KS ++I + + ++ N+ ++K+ E+++ + P V++H G +LQ+SLP
Sbjct: 1039 HFAS--KSFKKIGLEDYWTSLT-----LNNITEKKIDEIRQILDPIVHIHNGDILQKSLP 1091
Query: 352 GLRHSVVILQPDEFQKRLCKAVEGVKSFVELN--YCVSLLSVHPSLLPQQFF---ESFDV 406
GLR SVVIL P QK + A+E + L+ Y +SL S+HP L+ E+ V
Sbjct: 1092 GLRESVVILNPLPHQKEIITAMENTVTMGTLDAEYKISLASIHPFLVTCAKLSEKETSSV 1151
Query: 407 DSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQLRHRFNWRE 464
D + L L+ +P G+KT+F+L ++ L + E+VLVFSQY+EPL+LIM+QL FNW E
Sbjct: 1152 DVSLLKSLRPNPCVGVKTKFVLEIVRLCEAMKERVLVFSQYLEPLSLIMDQLSKMFNWTE 1211
Query: 465 GQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWN 524
G+E+L M G V+ R++ + N+ S A++MLASTKACCEGI L+GASRVVLLDVVWN
Sbjct: 1212 GEEILLMSGNVLVQNREALMEAFNNMKSNAKVMLASTKACCEGITLIGASRVVLLDVVWN 1271
Query: 525 PFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQ 584
P V RQAI RAYR+GQ+++V+ Y+LIT T E DK RQA+K S ++F
Sbjct: 1272 PSVGRQAIGRAYRIGQEKIVYTYNLITEGTKEKDKYDRQAKKDHMSKLLFSKEPHAAGFN 1331
Query: 585 TTASEPLEDKILEEM 599
+ DKILE M
Sbjct: 1332 LSQEVIFNDKILEAM 1346
>gi|15230098|ref|NP_189077.1| chromatin remodeling 40 [Arabidopsis thaliana]
gi|11994696|dbj|BAB02934.1| unnamed protein product [Arabidopsis thaliana]
gi|332643370|gb|AEE76891.1| chromatin remodeling 40 [Arabidopsis thaliana]
Length = 1132
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 266/594 (44%), Positives = 378/594 (63%), Gaps = 36/594 (6%)
Query: 50 PFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIIS 109
P + +GTVW+ VP ++ ++PHQ+EGFEFIWKN+AG ++EL NS G GCIIS
Sbjct: 558 PLDNIEGTVWQYVP-GIKDTLYPHQQEGFEFIWKNLAGTTKINEL-NSVGVKGSGGCIIS 615
Query: 110 HAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPEL 169
H GTGKT LT+VFLQ+Y+K P P++IAP +++ TWE+E +KW ++IPFYN+N +L
Sbjct: 616 HKAGTGKTRLTVVFLQSYLKRFPNSHPMVIAPATLMRTWEDEVRKWNVNIPFYNMNSLQL 675
Query: 170 SGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGI- 228
SG E+ AV+ R G IR VKL SW ILG+SY L+EKL + G+
Sbjct: 676 SGYEDAEAVS----RLEGNRHHNSIRMVKLVSWWKQKSILGISYPLYEKLAANKNTEGMQ 731
Query: 229 -----LLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS 283
L++LPGL V DEGHTPRN + ++K L+ ++T +RI LSGT FQNNF+EL N L
Sbjct: 732 VFRRMLVELPGLLVLDEGHTPRNQSSLIWKVLTEVRTEKRIFLSGTLFQNNFKELSNVLC 791
Query: 284 LVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
L R + T+ E+SK S G ++ ++ +LK IA FV+VH+G
Sbjct: 792 LARPADKD---TISSRIHELSKC------SQEGEHGRVNEENRIVDLKAMIAHFVHVHEG 842
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLL----PQQ 399
T+LQESLPGLR VV+L P QK++ ++ ++ E + +S +SVHPSL P +
Sbjct: 843 TILQESLPGLRDCVVVLNPPFQQKKILDRIDTSQNTFEFEHKLSAVSVHPSLYLCCNPTK 902
Query: 400 FFESFDVDSAKLA---RLKLDPEAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIME 454
E + A L RL+L E G+KT+FL+ + +S EKVLV+SQYI+ L LIME
Sbjct: 903 K-EDLVIGPATLGTLKRLRLKYEEGVKTKFLIDFIRISGTVKEKVLVYSQYIDTLKLIME 961
Query: 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGAS 514
QL +W EG+++L M GK + + RQ I+ N P S ++++LASTKAC EGI+LVGAS
Sbjct: 962 QLIAECDWTEGEQILLMHGKVEQRDRQHMIDNFNKPDSGSKVLLASTKACSEGISLVGAS 1021
Query: 515 RVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVF 574
RVV+LDVVWNP VE QAISRA+R+GQKR V +YHL+ +T EW+K +Q+ K S +VF
Sbjct: 1022 RVVILDVVWNPSVESQAISRAFRIGQKRAVFIYHLMVKDTSEWNKYCKQSEKHRISELVF 1081
Query: 575 PSSDGGGNDQTTASEPL-EDKILEEMAQLYNNPSETLINAIIPQPKETELIETF 627
S++ D+ +E + +D+IL+EM + + + + I+ PK++++ +F
Sbjct: 1082 SSTN--EKDKPINNEVVSKDRILDEMVR--HEKLKHIFEKILYHPKKSDMNTSF 1131
>gi|413923296|gb|AFW63228.1| hypothetical protein ZEAMMB73_593056 [Zea mays]
Length = 1321
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 243/558 (43%), Positives = 340/558 (60%), Gaps = 62/558 (11%)
Query: 48 CDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCI 107
C+ H G+VW L+P V++ MFPHQ++ FEF+W +AGG +++LK++ + G GC+
Sbjct: 768 CNFGDHKAGSVWNLIP-GVKETMFPHQQDAFEFMWTKLAGGTTIEQLKHTIKSDAGGGCV 826
Query: 108 ISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKP 167
ISHAPGTGKT L + F+Q+Y+++ P C PVIIAPR ML TWE+EF+KW
Sbjct: 827 ISHAPGTGKTRLAITFVQSYLEVFPHCSPVIIAPRGMLATWEKEFRKW------------ 874
Query: 168 ELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG 227
+ G ++D RK + + GD++
Sbjct: 875 -----KATGEARVLDERKLAN----------------------------HEGMDGDKVRK 901
Query: 228 ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
+LL+ P L V DEGHTPRN + ++K L R+ T +RIILSGT FQNNF+EL NTL LVR
Sbjct: 902 LLLEKPNLLVLDEGHTPRNKKSLIWKVLKRVHTEKRIILSGTLFQNNFEELYNTLRLVRP 961
Query: 288 EFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQ 347
+ + L ++ + + I+ AN + E+++K+ P V++H G LQ
Sbjct: 962 KDADALHLETDESKDFWSSLRLNDITK----AN------INEVRKKLDPIVHIHSGRFLQ 1011
Query: 348 ESLPGLRHSVVILQPDEFQKRLCKAVEGVKSF-VELNYCVSLLSVHPSLLPQ---QFFES 403
+SLPGLR SVVIL P +QK + ++E + ++ Y +SL S+HPSLL E
Sbjct: 1012 KSLPGLRESVVILNPLLYQKEVIASMEKTVAMGLDAEYKISLASIHPSLLASAKLSMKEE 1071
Query: 404 FDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQLRHRFN 461
+D KL L+ +P G+KTRF+L ++ L + NE+VLVFSQY+EPL+LIMEQL+ RF+
Sbjct: 1072 SILDKPKLESLRSNPSGGVKTRFVLEIVRLCEALNERVLVFSQYLEPLSLIMEQLKERFS 1131
Query: 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDV 521
W EG+E+L M GK VKKRQ+ + V N+ S+A++MLASTKACCEGI LVGASRVVLLDV
Sbjct: 1132 WAEGEEILLMSGKVLVKKRQTMMEVFNNMKSKAKVMLASTKACCEGITLVGASRVVLLDV 1191
Query: 522 VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGG 581
VWNP V RQAI RAYR+GQ+++V+ Y+LI T E K RQA+K S ++F + G
Sbjct: 1192 VWNPSVGRQAIGRAYRIGQRKIVYTYNLIAEGTTEKRKYDRQAKKEHMSKLLFSNELERG 1251
Query: 582 NDQTTASEPLEDKILEEM 599
D++LEE+
Sbjct: 1252 GCNLPPELTFNDRVLEEL 1269
>gi|242066540|ref|XP_002454559.1| hypothetical protein SORBIDRAFT_04g033300 [Sorghum bicolor]
gi|241934390|gb|EES07535.1| hypothetical protein SORBIDRAFT_04g033300 [Sorghum bicolor]
Length = 1484
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 245/559 (43%), Positives = 338/559 (60%), Gaps = 57/559 (10%)
Query: 48 CDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCI 107
C+ H G+VW+L+P V++ MFPHQ++ FEF+W +AGG +++LK + + G GC+
Sbjct: 861 CNFGGHKAGSVWDLIP-GVKETMFPHQQDAFEFLWTKLAGGTTIEQLKQTVKSDVGGGCV 919
Query: 108 ISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKP 167
ISHAPGTGKT L + F+Q+Y+++ PRCRPVIIAPR ML TWE+EF+KW
Sbjct: 920 ISHAPGTGKTRLAITFVQSYLEVFPRCRPVIIAPRGMLATWEKEFRKWKA---------- 969
Query: 168 ELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG 227
+G +R L WK+ + + GD++
Sbjct: 970 -----------------------IGEVRV--LDEWKLAN----------HEGMDGDKVRK 994
Query: 228 ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
+LL+ PGL V DEGHTPRN + ++K L R+ T +RIILSGT FQNNF+EL+NTL LVR
Sbjct: 995 LLLEKPGLLVLDEGHTPRNKKSLIWKVLERVSTEKRIILSGTLFQNNFEELKNTLRLVRT 1054
Query: 288 EFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQ 347
+ + + E + K SS+ N + + E+++K+ P V++H G LQ
Sbjct: 1055 KEADGPKEADAVHLETDEGK--DFWSSL--RLNDITEADINEVRKKLDPIVHIHSGKFLQ 1110
Query: 348 ESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN--YCVSLLSVHPSLLPQQFF---E 402
+SLPGL SVVIL P +QK + +E + L+ Y +S+ S+HPSLL E
Sbjct: 1111 KSLPGLGESVVILNPLPYQKEVIATMEKTVATTGLDEEYKISIASIHPSLLASAKLSEQE 1170
Query: 403 SFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQLRHRF 460
+D KL L+ P G+KTRF+L ++ L + NE+VLVFSQY+ PL+LIMEQL+ +F
Sbjct: 1171 ESILDIPKLESLRSRPSEGVKTRFVLEIVRLCEALNERVLVFSQYLGPLSLIMEQLKAKF 1230
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
NW EG+E+L M GK VK RQ+ + V ND S+A++MLASTKACCEGI L+GASRVVLLD
Sbjct: 1231 NWAEGKEILLMSGKVPVKNRQTMMEVFNDMKSKAKVMLASTKACCEGITLIGASRVVLLD 1290
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGG 580
VVWNP V RQAI RAYR+GQ+++V+ Y+LI T E K QA+K S ++F
Sbjct: 1291 VVWNPSVGRQAIGRAYRIGQEKIVYTYNLIAQGTREKSKYDTQAKKEHMSKLLFSKEPEH 1350
Query: 581 GNDQTTASEPLEDKILEEM 599
G D++LEEM
Sbjct: 1351 GECNLPPELTFNDRVLEEM 1369
>gi|357142996|ref|XP_003572765.1| PREDICTED: uncharacterized protein LOC100831563 [Brachypodium
distachyon]
Length = 1316
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 239/584 (40%), Positives = 359/584 (61%), Gaps = 40/584 (6%)
Query: 48 CDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCI 107
C H G+VW+L+P V++ +F +Q EF+WKN+AGG + ++KN+ ++ GC
Sbjct: 737 CKIVDHKAGSVWDLIP-GVKEGLFTYQAAAVEFMWKNLAGGTKIQDVKNNINSDDLRGCW 795
Query: 108 ISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKP 167
ISHAPGTGKT T+ FLQ+Y L PR +IIAP++ML TW++E KW +P + +
Sbjct: 796 ISHAPGTGKTRSTIAFLQSYRVLFPRSCVLIIAPKAMLATWQDEIGKWNAKVPIHVYSSC 855
Query: 168 ELSGKENNGAVALMDNRKRGRGKVGLIRY-------VKLYSWKMGTGILGLSYRLFEKLV 220
+++ + ++DN + ++ + ++ +K+ SW G+ +LG+SY +F KL
Sbjct: 856 DINWGGDETIKRIVDNDEDFAQRLSVNKFGPKVRKVLKVRSWCEGSSVLGMSYEMFSKLA 915
Query: 221 ---SGDE-LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQ 276
S DE + +LL+ L + DEGH PRN + ++K L+ ++T++RIILSGTPFQNNF+
Sbjct: 916 KQNSNDETMRKLLLEKTDLLILDEGHKPRNKKSIIWKVLAEVRTKKRIILSGTPFQNNFE 975
Query: 277 ELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP 336
EL N L L++ T + + K + +S+ ++ DE++ E+++K+ P
Sbjct: 976 ELYNVLCLLQG-------TCDADSKLLGKDEDKGFWTSMS--VDNITDERVNEIRDKLKP 1026
Query: 337 FVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVE------GVKSFVELNYCVSLLS 390
F++++ G LQ+SLPGLR SVVIL P QK++ K +E G ++ Y +SL S
Sbjct: 1027 FLHIYNGEFLQKSLPGLRESVVILNPFPHQKKIIKMLEDSRTKSGTNGHLDFEYKISLAS 1086
Query: 391 VHPSL------LPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST--NEKVLVF 442
VHPSL LP Q +D L L+L+P G+KT+F+ ++ L E+VLVF
Sbjct: 1087 VHPSLITSTQKLPYQLTSV--MDKPLLESLRLNPCEGVKTKFVFEIVRLCQPLKERVLVF 1144
Query: 443 SQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTK 502
SQY++PL LIM+QLR F W + +E+L M G D + RQ +N N+ S+A++MLASTK
Sbjct: 1145 SQYLQPLDLIMQQLRSEFLWTKDKEILSMSGDDDAETRQKLMNDFNNMESEAKVMLASTK 1204
Query: 503 ACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRR 562
AC EGI L+GASRVVLLDVVWNP V RQAI RA+R+GQK++VH Y+LI T E K R
Sbjct: 1205 ACGEGITLIGASRVVLLDVVWNPSVGRQAIGRAFRIGQKKIVHTYNLIAEGTQEKSKYDR 1264
Query: 563 QARKVWWSNMVFPSSDGGGNDQTTASEPL--EDKILEEMAQLYN 604
QA+K S ++F S++ + + + E + DKILE+M + N
Sbjct: 1265 QAQKDHMSKLLF-SNETQPAECSKSPEFIVSSDKILEKMTEDTN 1307
>gi|168042770|ref|XP_001773860.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
patens]
gi|162674847|gb|EDQ61350.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
patens]
Length = 1566
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 220/594 (37%), Positives = 315/594 (53%), Gaps = 86/594 (14%)
Query: 55 QGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGN---------G 105
+G+ +EL+P ++ K M HQ+ GF+F+W+N+AG GN G
Sbjct: 883 KGSNFELIP-ELAKHMQRHQKHGFQFLWRNLAG-----------QDANGNPCFPPREPGG 930
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLN 165
C+ISHAPGTGKT L + FL +Y+K +P CRPVI+AP+ ML WE EF+KW + IP YN N
Sbjct: 931 CVISHAPGTGKTFLIISFLHSYIKKYPHCRPVIVAPKIMLQPWEREFRKWNVGIPVYNFN 990
Query: 166 KPELSGK------ENNGAVALMDN-RKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEK 218
K G+ E G V L R + + + R L+ W +L +SY +F
Sbjct: 991 KAAEQGRIFLQQHEEAGDVQLNSGGRWKKQRSMNACREAMLWQWTKTPSVLVISYSMFAL 1050
Query: 219 LVSGDELSG-----ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQN 273
+ + + ++ ILL+ P + V DEGH RN + K L +KT RI+LSGT FQN
Sbjct: 1051 MTTQERMTSSTVRTILLERPHILVLDEGHFARNSRAQILKPLMAVKTPLRIMLSGTLFQN 1110
Query: 274 NFQELENTLSLVRQEFGEVLRTVRKSG-------REIS----------------KAKHAS 310
NF+EL +L+LVR F ++T K +EI KA A+
Sbjct: 1111 NFEELYTSLNLVRSGF---VKTYAKDAGLKFNIQQEIELKGDDEVEHHTAEWKEKAAKAA 1167
Query: 311 LISS----IGRCANHRDD------------EKLKELKEKIAPFVNVHKGTVLQESLPGLR 354
+ + + N D + L++L+ +PF++ +KG VL++ LP LR
Sbjct: 1168 EVQAKKLFMEEVGNKIDKGQKGELSPGSLAQGLEQLRRLTSPFIHHYKGGVLRD-LPPLR 1226
Query: 355 HSVVILQPDEFQKRLCKAVEGV---KSFVELNYCVSLLSVHPSLLPQQ-----FFESFDV 406
++LQP Q +L ++V K+ +E +SL+ +HPSL + +
Sbjct: 1227 DFAIMLQPTALQVKLVQSVTRRLEDKTMLERECLLSLICIHPSLFLEHNVGKALTDLLSQ 1286
Query: 407 DSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQLRHRFNWRE 464
+ DPE G+KTRF++ LL EK+L+F Q + P L+ E L++ F W
Sbjct: 1287 EEMNEVATNRDPEVGVKTRFVINLLNQLRYGQEKILIFCQNLVPFILLEEMLKNEFGWVR 1346
Query: 465 GQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWN 524
QE+L +DGK D +RQS I ND + R++LASTKAC EGI L GASRVV +DV+WN
Sbjct: 1347 EQEILQLDGKVDPDERQSIIERFNDRKGKIRVLLASTKACGEGITLTGASRVVFMDVLWN 1406
Query: 525 PFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
P V RQAI RA+R+GQ+ VHVY L+ S T+E K +R K W S +F SD
Sbjct: 1407 PAVIRQAIHRAFRIGQRNAVHVYRLVASGTMEESKYQRMVSKDWKSQSIFRGSD 1460
>gi|357503527|ref|XP_003622052.1| DNA repair and recombination protein RAD54-like protein [Medicago
truncatula]
gi|355497067|gb|AES78270.1| DNA repair and recombination protein RAD54-like protein [Medicago
truncatula]
Length = 1184
Score = 348 bits (892), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 222/646 (34%), Positives = 353/646 (54%), Gaps = 55/646 (8%)
Query: 4 IKDIDPPFATSPSR---RAEWREYNNVD------PSFLDDLNSRDSGFDSQTGCD-PFTH 53
I+DI P + R R E ++Y+ D + +D+ +++D + T D P +
Sbjct: 499 IRDISEPVVSQVERQKWRKEEKQYSEEDNDEQKSEAKVDEDDNKDMFSTNATDPDEPISA 558
Query: 54 AQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPG 113
+ TVWE +P ++++KM HQ++ F+F+W+NIAG ++ ++ + T GG C+ISHAPG
Sbjct: 559 EKDTVWESIP-ELKEKMHAHQKKAFKFLWQNIAGSMEPSLMQERSETNGG--CVISHAPG 615
Query: 114 TGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKE 173
GKT L + FL +Y+KL P RP+++AP+S L TW +EFKKW + +P Y + +
Sbjct: 616 AGKTFLVISFLVSYLKLFPGKRPLVLAPKSTLYTWCKEFKKWKVPVPVYLIQGRQTQRDS 675
Query: 174 NNGAVALMDNRKRGRGKVGLIRYV--KLYSWKMGTGILGLSYRLFEKLVSGDE------- 224
++ R G V + K+ W +L + Y F L+ D
Sbjct: 676 TAPKPTVLPGVPRPSGDVKHVLDCLGKIKKWHSHPSVLVMGYTSFLALMRQDTKFAHRKY 735
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
++ L + PG+ + DEGH PR+ + + K L + T RI+LSGT FQNNF E NTL L
Sbjct: 736 MAKTLRESPGILILDEGHNPRSTKSRLRKCLMELPTELRILLSGTLFQNNFGEYFNTLCL 795
Query: 285 VRQEF-GEVLRTV-----RKSGREISKAKH-------ASLISSIGRCANHRDDEK----L 327
R +F EVLR + R+ RE KA+H + +I R N +DE+ L
Sbjct: 796 ARPKFVHEVLRELDSKYLRRGNRE-KKAQHLLEARARKFFLDNIARKINSDNDEEKMQGL 854
Query: 328 KELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL-----QPDEFQKRLCKAVEGVKSFVEL 382
L++ + F++V++ ++LPGL+ +++ Q + QK K E +E+
Sbjct: 855 HVLRKITSSFIDVYESGNSSDTLPGLQIYTLLMNTYDEQLEILQKLQKKMAECTGYPLEV 914
Query: 383 NYCVSLLSVHPSLL------PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE-LST 435
++L S+HP L+ ++FF ++ +L R+K D G K RF+L L+ +
Sbjct: 915 ELLITLGSIHPWLIKTATACAEKFFAEDEL--KRLDRIKFDLRKGSKIRFVLSLISRVVK 972
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
NEKVL+F Y+ P+ +E F W+ G+EVL + G D+ +R I+ DP S ++
Sbjct: 973 NEKVLIFCHYLAPVRFFIELFEKYFQWQNGKEVLILTGDLDLFERGKVIDKFEDPRSGSK 1032
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
I+LAS AC EGI+L ASRV+ LD WNP +QAI+RA+R GQ+++V+VY L+T+ ++
Sbjct: 1033 ILLASINACAEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTTGSM 1092
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQ 601
E DK R+ K W S+M+F S + + +E +ED+IL EM +
Sbjct: 1093 EEDKFRKTTWKEWVSSMIF-SEEFVEDPSKWQAEKIEDEILREMVE 1137
>gi|357115954|ref|XP_003559750.1| PREDICTED: uncharacterized protein LOC100839149 [Brachypodium
distachyon]
Length = 1248
Score = 342 bits (876), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 202/561 (36%), Positives = 311/561 (55%), Gaps = 45/561 (8%)
Query: 54 AQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPG 113
G +W L+P D+ K+ PHQ+E FEFIWKN+AG + L+E+ N T++ G GC+++H PG
Sbjct: 652 GSGNLWSLIP-DLEPKLLPHQKEAFEFIWKNLAGSLQLEEMDNPTASSTG-GCVVAHTPG 709
Query: 114 TGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKE 173
+GKT L + FL +Y+K+HPR RP+I+AP+S + TW+ EF+KWGI +P + L+ + G+
Sbjct: 710 SGKTLLLISFLVSYLKVHPRSRPLILAPKSAIHTWKREFEKWGISLPLHVLHHADSRGRS 769
Query: 174 NNGAVALMDN--RKRGRGKVGLIRYV----KLYSWKMGTGILGLSYRLF-------EKLV 220
M K R +R+V KL W +L ++Y F ++
Sbjct: 770 MGAIDPRMQEILSKFHRSSWKNMRFVDCMDKLCKWHASPSVLLMTYSSFLGLTREGSRMQ 829
Query: 221 SGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELEN 280
+ +L++ PGL V DEGH PR++ + + K L ++KT RI+LSGT FQNNF+E N
Sbjct: 830 QRASMVQVLINNPGLLVLDEGHNPRSNKSKLRKMLMKVKTEYRILLSGTVFQNNFEEYFN 889
Query: 281 TLSLVRQEFGE----VLRTVRKSGREISKAKHASLISS---IGRCANHRDD-------EK 326
TLSL R F + L RK +AKH ++ + R A + +
Sbjct: 890 TLSLARPRFVDDVMAALVMERKKEMRGRRAKHREAVARRIFVERVAQKMESSSSRDRIDG 949
Query: 327 LKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSF-----VE 381
L L + F++ +G L +LPG+ V ++P + Q+ + V S +E
Sbjct: 950 LNLLNKLTCGFIDSFEGAKLS-NLPGIHVYTVFMKPGKIQEEILAKVSMSTSCTGRYPLE 1008
Query: 382 LNYCVSLLSVHPSLL-----PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST- 435
+ +++ S+HP L+ FF S ++D K+ + K D AG K +F++ LL +
Sbjct: 1009 IELLITVGSIHPWLIKTTNCASTFFTSAELD--KVDKYKKDFAAGCKAKFVIDLLHKCSF 1066
Query: 436 -NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQ 493
E+VL+F + P+ +++ + + F WR G+EVL + G QD+ R ++ N D +
Sbjct: 1067 RGERVLIFCHNVSPINFLVKLIENVFGWRLGEEVLVLQGDQDLPVRSDVMDKFNSDGEGK 1126
Query: 494 ARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553
++++AST AC EGI+L GASR+V+LD WN RQAI+R +R GQ+R V+VY L+ S
Sbjct: 1127 RKVLIASTTACAEGISLTGASRLVMLDSEWNHSKTRQAIARVFRPGQERTVYVYLLVASG 1186
Query: 554 TLEWDKLRRQARKVWWSNMVF 574
T E K R RK W S MVF
Sbjct: 1187 TWEEGKYNRNRRKAWMSKMVF 1207
>gi|115463703|ref|NP_001055451.1| Os05g0392400 [Oryza sativa Japonica Group]
gi|113579002|dbj|BAF17365.1| Os05g0392400, partial [Oryza sativa Japonica Group]
Length = 450
Score = 338 bits (866), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 202/455 (44%), Positives = 279/455 (61%), Gaps = 47/455 (10%)
Query: 213 YRLFEKLVSG-------DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRII 265
Y L+ KL S +++ ILL+ PGL V DEGHTPRN+ + ++K L ++KT +RII
Sbjct: 1 YGLYMKLTSEKVGCTGENKVRTILLENPGLLVLDEGHTPRNERSVIWKTLGKVKTEKRII 60
Query: 266 LSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE--ISKAKH------------ASL 311
LSGTPFQNNF EL N L LVR FGE+ T + GR +SK + ASL
Sbjct: 61 LSGTPFQNNFLELYNILCLVRPRFGEMFLTKTRVGRRHCVSKKQRDKFSDKYEKGVWASL 120
Query: 312 ISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCK 371
S++ D+ ++++ + PFV++H GT+L+ +LPGLR V++L+P QK + +
Sbjct: 121 TSNV-------TDDNAEKVRSILKPFVHIHNGTILR-TLPGLRECVIVLKPLPLQKSIIR 172
Query: 372 AVEGVKS--FVELNYCVSLLSVHPSLLPQQFF---ESFDVDSAKLARLKLDPEAGIKTRF 426
VE V S E Y +SL S HPSL+ E+ +D L RL+ +P G+KTRF
Sbjct: 173 KVENVGSGNNFEHEYVISLASTHPSLVNAINMTEEEASLIDKPMLERLRSNPYEGVKTRF 232
Query: 427 LLILLEL--STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSI 484
++ ++ L + EKVL+FSQ+I+PL LI E LR F WREG+E+L MDGK + RQ+SI
Sbjct: 233 VMEVVRLCEALKEKVLIFSQFIQPLELIKEHLRKIFKWREGKEILQMDGKILPRYRQNSI 292
Query: 485 NVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVV 544
V N+P S AR++LAST+ACCEGI+L GASRVVLLDVVWNP V RQAISRA+R+GQK+ V
Sbjct: 293 EVFNNPDSDARVLLASTRACCEGISLTGASRVVLLDVVWNPAVGRQAISRAFRIGQKKFV 352
Query: 545 HVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEP---------LEDKI 595
+ Y+LIT T E DK RQA K S +VF + D N + S+ EDK+
Sbjct: 353 YTYNLITYGTGEGDKYDRQAEKDHLSKLVFSTEDEFSNVRNMLSKAEMEHCSKLISEDKV 412
Query: 596 LEEMAQLYNNPSETLINAIIPQPKETELIETFGEF 630
LEEM ++ + + I P E+ ++ T+ +
Sbjct: 413 LEEMTS--HDQLKGMFLKIHYPPTESNIVFTYNQI 445
>gi|54287520|gb|AAV31264.1| unknown protein [Oryza sativa Japonica Group]
gi|260401074|gb|ACX37088.1| helicase superfamily C-terminal domain containing protein [Oryza
sativa Japonica Group]
Length = 446
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 197/438 (44%), Positives = 273/438 (62%), Gaps = 40/438 (9%)
Query: 223 DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
+++ ILL+ PGL V DEGHTPRN+ + ++K L ++KT +RIILSGTPFQNNF EL N L
Sbjct: 14 NKVRTILLENPGLLVLDEGHTPRNERSVIWKTLGKVKTEKRIILSGTPFQNNFLELYNIL 73
Query: 283 SLVRQEFGEVLRTVRKSGRE--ISKAKH------------ASLISSIGRCANHRDDEKLK 328
LVR FGE+ T + GR +SK + ASL S++ D+ +
Sbjct: 74 CLVRPRFGEMFLTKTRVGRRHCVSKKQRDKFSDKYEKGVWASLTSNV-------TDDNAE 126
Query: 329 ELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKS--FVELNYCV 386
+++ + PFV++H GT+L+ +LPGLR V++L+P QK + + VE V S E Y +
Sbjct: 127 KVRSILKPFVHIHNGTILR-TLPGLRECVIVLKPLPLQKSIIRKVENVGSGNNFEHEYVI 185
Query: 387 SLLSVHPSLLPQQFF---ESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLV 441
SL S HPSL+ E+ +D L RL+ +P G+KTRF++ ++ L + EKVL+
Sbjct: 186 SLASTHPSLVNAINMTEEEASLIDKPMLERLRSNPYEGVKTRFVMEVVRLCEALKEKVLI 245
Query: 442 FSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAST 501
FSQ+I+PL LI E LR F WREG+E+L MDGK + RQ+SI V N+P S AR++LAST
Sbjct: 246 FSQFIQPLELIKEHLRKIFKWREGKEILQMDGKILPRYRQNSIEVFNNPDSDARVLLAST 305
Query: 502 KACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561
+ACCEGI+L GASRVVLLDVVWNP V RQAISRA+R+GQK+ V+ Y+LIT T E DK
Sbjct: 306 RACCEGISLTGASRVVLLDVVWNPAVGRQAISRAFRIGQKKFVYTYNLITYGTGEGDKYD 365
Query: 562 RQARKVWWSNMVFPSSDGGGNDQTTASEP---------LEDKILEEMAQLYNNPSETLIN 612
RQA K S +VF + D N + S+ EDK+LEEM ++ + +
Sbjct: 366 RQAEKDHLSKLVFSTEDEFSNVRNMLSKAEMEHCSKLISEDKVLEEMTS--HDQLKGMFL 423
Query: 613 AIIPQPKETELIETFGEF 630
I P E+ ++ T+ +
Sbjct: 424 KIHYPPTESNIVFTYNQI 441
>gi|357461419|ref|XP_003600991.1| DNA repair and recombination protein RAD54-like protein [Medicago
truncatula]
gi|355490039|gb|AES71242.1| DNA repair and recombination protein RAD54-like protein [Medicago
truncatula]
Length = 1267
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 218/646 (33%), Positives = 345/646 (53%), Gaps = 53/646 (8%)
Query: 3 SIKDIDPPFATSPSRRAEWREY------NNVDPSFLDDLNSRDSGFDSQTGCDPFTHAQG 56
+I+DI PF P R E ++ + +P +D N+ +P T+
Sbjct: 609 AIRDISEPFVECPKRYKEEKQCSEENKEHKSEPKVDEDYNNDMFSTHVTDPDEPLTNEID 668
Query: 57 TVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGK 116
VWEL+P ++ +KM HQ++ FEF+W+NIAG ++ ++ +++ GG C+ISHAPG GK
Sbjct: 669 NVWELIP-ELEEKMHEHQKKAFEFLWQNIAGSMEPSLMEEKSNSSGG--CVISHAPGAGK 725
Query: 117 TGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLN----KPELSGK 172
T L + FL +Y+KL P RP+++AP++ L TW +EFKKW I +P Y ++ P S
Sbjct: 726 TFLIISFLVSYLKLFPGKRPLVLAPKTTLYTWRKEFKKWKISVPVYLIHGRRTSPGSSST 785
Query: 173 ENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE-------- 224
+ R K L K+ W +L + Y F +L+ +
Sbjct: 786 TPKSMILPGFPRPSSDVKHVLDCLSKIQKWHSHPSVLVMGYTSFLQLMRSKDTKFEHRKY 845
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
++ L + PG+ + DEGH PR+ + + K L ++ T RI+LSGT FQNNF E NTL L
Sbjct: 846 MAKALRESPGILILDEGHNPRSTKSRLRKCLMKLPTELRILLSGTLFQNNFCEYFNTLCL 905
Query: 285 VRQEF-GEVLRTV-----RKSGREISKAKH-------ASLISSIGRCANHRDDEK----L 327
R +F EVL+ + RK G+ K +H +++I + N DE+ L
Sbjct: 906 ARPKFVHEVLQELDSKYRRKGGKIAKKERHLLEARARKFFLNNIEKKINSDIDEEKMQGL 965
Query: 328 KELKEKIAPFVNVHKGTVLQESLPGLR-HSVVILQPDE----FQKRLCKAVEGVKSFVEL 382
L++ + F++V+ E+LPGL+ +++++ DE QK K E +E+
Sbjct: 966 YVLRKITSSFIDVYDSGNSSETLPGLQIYTLLMNTSDEQHEIVQKLQKKMAESTSYPLEV 1025
Query: 383 NYCVSLLSVHPSLL------PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE-LST 435
++L S+HP L+ +FF ++ KL K D K RF+L L+ +
Sbjct: 1026 ELLITLGSIHPWLIKTAASCATKFFAEEEL--KKLEISKFDLRKSSKVRFVLSLISRVVK 1083
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
NEKVL+F + P+ ++E F W+ G+E++ + G+ D+ +R I+ D SS ++
Sbjct: 1084 NEKVLIFCHNLAPVRFLIELFEKYFQWQNGKEIMVLTGELDLFERGKVIDKFEDQSSGSK 1143
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
I+LAS AC EGI+L ASRV+ LD WNP +QAI+RA+R GQ+++V+VY L+T+ ++
Sbjct: 1144 ILLASINACAEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLTTGSM 1203
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQ 601
E DK RR K W S M+F S + + +E +ED IL EM +
Sbjct: 1204 EEDKYRRTTWKEWVSCMIF-SEEFVEDPSKWQAEKIEDDILREMVE 1248
>gi|218200306|gb|EEC82733.1| hypothetical protein OsI_27432 [Oryza sativa Indica Group]
Length = 1770
Score = 332 bits (851), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 208/620 (33%), Positives = 334/620 (53%), Gaps = 67/620 (10%)
Query: 27 VDPSFLDDLNSRDSGFDSQTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIA 86
+DPS L +L S + G+VW + D+ K+ PHQR+ +F+WKN+A
Sbjct: 1157 LDPSLLANLAPELSELKNS----------GSVWSAI-SDLDPKLLPHQRKALDFLWKNLA 1205
Query: 87 GGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLL 146
G I ++ + NS + GG C+I+H PG+GKT L + FL +YMK HPR RP+++ P++ +
Sbjct: 1206 GSIQVEGMDNSNVSTGG--CVIAHTPGSGKTLLLISFLVSYMKAHPRSRPLVLTPKAAIH 1263
Query: 147 TWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG------RGKVGLIRYV--- 197
TW+ EF+KWGI +P + + SGK + MD++ R R +R +
Sbjct: 1264 TWKREFEKWGISLPLHVFHHANRSGK----PLGAMDSKLRSLLNNFHRPTWTNMRLMDSL 1319
Query: 198 -KLYSWKMGTGILGLSYRLFEKLVSGDE---------LSGILLDLPGLFVFDEGHTPRND 247
KL+ W +L ++Y F + D ++ +L++ PGL + DEGH PR++
Sbjct: 1320 DKLFKWHAHPSVLLMTYSSFLGMTKQDSKVRNRYREFIAEVLMNNPGLLILDEGHNPRSN 1379
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTV---RKSGREI 303
+ + K L ++KT RI+LSGT FQNNF+E NTL L R F G+++ + RK
Sbjct: 1380 KSKLRKLLMKVKTEFRILLSGTAFQNNFEEYFNTLCLARPRFIGDIMSELVPERKRETVG 1439
Query: 304 SKAKHASLIS----------SIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGL 353
+AKH ++ I H + + L + F++ +G L +LPG+
Sbjct: 1440 RRAKHQEAVARRAFVEKVGQKIESDNKHIRSDGISLLNKLTRGFIDSFEGAKLI-NLPGI 1498
Query: 354 RHSVVILQPDEFQKRLCKAVE----GVKSF-VELNYCVSLLSVHPSLLP-----QQFFES 403
V ++P + Q+ + V G F +E+ +++ S+HP L+ FF
Sbjct: 1499 HVYTVFMKPTDIQEEMLAKVTMPKLGSSRFPLEVELLITIGSIHPWLIKTTKAVSTFFSP 1558
Query: 404 FDVDSAKLARLKLDPEAGIKTRFLLILLELST--NEKVLVFSQYIEPLTLIMEQLRHRFN 461
+V K+ R K D AG K +F++ LL S+ E+VL+F + P+T +++ + F
Sbjct: 1559 AEV--KKVERYKRDFAAGCKAKFVIDLLHKSSFRGERVLIFCHNVSPITFLVKLIEMVFG 1616
Query: 462 WREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGINLVGASRVVLLD 520
WR G+EVL + G Q++ R ++ N D + + ++++AST AC EGI+L GASR+V+LD
Sbjct: 1617 WRLGEEVLVLQGDQELPVRSDVMDKFNGDSAGKRKVLIASTTACAEGISLTGASRLVMLD 1676
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGG 580
WN RQAI+RA+R GQ+R V+VY L+ S T E +K RK W S MVF
Sbjct: 1677 SEWNHSKTRQAIARAFRRGQERTVYVYLLVASGTWEEEKYNSNRRKAWMSKMVFLGRYVD 1736
Query: 581 GNDQTTASEPLEDKILEEMA 600
+ Q ++ ++D++L+E+A
Sbjct: 1737 DSSQNRVTD-IDDEVLKELA 1755
>gi|33146888|dbj|BAC79886.1| putative DNA repair protein rhp54 [Oryza sativa Japonica Group]
Length = 637
Score = 331 bits (848), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 208/620 (33%), Positives = 336/620 (54%), Gaps = 67/620 (10%)
Query: 27 VDPSFLDDLNSRDSGFDSQTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIA 86
+DPS L +L S + G+VW + D+ K+ PHQR+ +F+WKN+A
Sbjct: 24 LDPSLLANLAPELSELKNS----------GSVWSAIS-DLDPKLLPHQRKALDFLWKNLA 72
Query: 87 GGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLL 146
G I ++ + NS + GG C+I+H PG+GKT L + FL +YMK HPR RP+++ P++ +
Sbjct: 73 GSIQVEGMDNSNVSTGG--CVIAHTPGSGKTLLLISFLVSYMKAHPRSRPLVLTPKAAIH 130
Query: 147 TWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG------RGKVGLIRYV--- 197
TW+ EF+KWGI +P + + SGK + MD++ R R +R +
Sbjct: 131 TWKREFEKWGISLPLHVFHHANRSGK----PLGAMDSKLRSLLNNFHRPTWTNMRLMDSL 186
Query: 198 -KLYSWKMGTGILGLSYRLFEKLVSGDE---------LSGILLDLPGLFVFDEGHTPRND 247
KL+ W +L ++Y F + D ++ +L++ PGL + DEGH PR++
Sbjct: 187 DKLFKWHAHPSVLLMTYSSFLGMTKQDSKVRNRYREFIAEVLMNNPGLLILDEGHNPRSN 246
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTV---RKSGREI 303
+ + K L ++KT RI+LSGT FQNNF+E NTL L R F G+++ + RK
Sbjct: 247 KSKLRKLLMKVKTEFRILLSGTAFQNNFEEYFNTLCLARPRFIGDIMSELVPERKRETVG 306
Query: 304 SKAKHA------SLISSIGRCA----NHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGL 353
+AKH + + +G+ H + + L + F++ +G L +LPG+
Sbjct: 307 RRAKHQEAVARRAFVEKVGQKIESDNKHIRSDGISLLNKLTRGFIDSFEGAKLI-NLPGI 365
Query: 354 RHSVVILQPDEFQKRLCKAVE----GVKSF-VELNYCVSLLSVHPSLLP-----QQFFES 403
V ++P + Q+ + V G F +E+ +++ S+HP L+ FF
Sbjct: 366 HVYTVFMKPTDIQEEMLAKVTMPKLGSSRFPLEVELLITIGSIHPWLIKTTKAVSTFFSP 425
Query: 404 FDVDSAKLARLKLDPEAGIKTRFLLILLELST--NEKVLVFSQYIEPLTLIMEQLRHRFN 461
+V K+ R K D AG K +F++ LL S+ E+VL+F + P+T +++ + F
Sbjct: 426 AEV--KKVERYKRDFAAGCKAKFVIDLLHKSSFRGERVLIFCHNVSPITFLVKLIEMVFG 483
Query: 462 WREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGINLVGASRVVLLD 520
WR G+EVL + G Q++ R ++ N D + + ++++AST AC EGI+L GASR+V+LD
Sbjct: 484 WRLGEEVLVLQGDQELPVRSDVMDKFNGDSAGKRKVLIASTTACAEGISLTGASRLVMLD 543
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGG 580
WN RQAI+RA+R GQ+R V+VY L+ S T E +K RK W S MVF
Sbjct: 544 SEWNHSKTRQAIARAFRRGQERTVYVYLLVASGTWEEEKYNSNRRKAWMSKMVFLGRYVD 603
Query: 581 GNDQTTASEPLEDKILEEMA 600
+ Q ++ ++D++L+E+A
Sbjct: 604 DSSQNRVTD-IDDEVLKELA 622
>gi|222637735|gb|EEE67867.1| hypothetical protein OsJ_25679 [Oryza sativa Japonica Group]
Length = 1390
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 208/620 (33%), Positives = 334/620 (53%), Gaps = 67/620 (10%)
Query: 27 VDPSFLDDLNSRDSGFDSQTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIA 86
+DPS L +L S + G+VW + D+ K+ PHQR+ +F+WKN+A
Sbjct: 777 LDPSLLANLAPELSELKNS----------GSVWSAIS-DLDPKLLPHQRKALDFLWKNLA 825
Query: 87 GGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLL 146
G I ++ + NS + GG C+I+H PG+GKT L + FL +YMK HPR RP+++ P++ +
Sbjct: 826 GSIQVEGMDNSNVSTGG--CVIAHTPGSGKTLLLISFLVSYMKAHPRSRPLVLTPKAAIH 883
Query: 147 TWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG------RGKVGLIRYV--- 197
TW+ EF+KWGI +P + + SGK + MD++ R R +R +
Sbjct: 884 TWKREFEKWGISLPLHVFHHANRSGK----PLGAMDSKLRSLLNNFHRPTWTNMRLMDSL 939
Query: 198 -KLYSWKMGTGILGLSYRLFEKLVSGDE---------LSGILLDLPGLFVFDEGHTPRND 247
KL+ W +L ++Y F + D ++ +L++ PGL + DEGH PR++
Sbjct: 940 DKLFKWHAHPSVLLMTYSSFLGMTKQDSKVRNRYREFIAEVLMNNPGLLILDEGHNPRSN 999
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTV---RKSGREI 303
+ + K L ++KT RI+LSGT FQNNF+E NTL L R F G+++ + RK
Sbjct: 1000 KSKLRKLLMKVKTEFRILLSGTAFQNNFEEYFNTLCLARPRFIGDIMSELVPERKRETVG 1059
Query: 304 SKAKHASLIS----------SIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGL 353
+AKH ++ I H + + L + F++ +G L +LPG+
Sbjct: 1060 RRAKHQEAVARRAFVEKVGQKIESDNKHIRSDGISLLNKLTRGFIDSFEGAKLI-NLPGI 1118
Query: 354 RHSVVILQPDEFQKRLCKAVE----GVKSF-VELNYCVSLLSVHPSLLP-----QQFFES 403
V ++P + Q+ + V G F +E+ +++ S+HP L+ FF
Sbjct: 1119 HVYTVFMKPTDIQEEMLAKVTMPKLGSSRFPLEVELLITIGSIHPWLIKTTKAVSTFFSP 1178
Query: 404 FDVDSAKLARLKLDPEAGIKTRFLLILLELST--NEKVLVFSQYIEPLTLIMEQLRHRFN 461
+V K+ R K D AG K +F++ LL S+ E+VL+F + P+T +++ + F
Sbjct: 1179 AEV--KKVERYKRDFAAGCKAKFVIDLLHKSSFRGERVLIFCHNVSPITFLVKLIEMVFG 1236
Query: 462 WREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGINLVGASRVVLLD 520
WR G+EVL + G Q++ R ++ N D + + ++++AST AC EGI+L GASR+V+LD
Sbjct: 1237 WRLGEEVLVLQGDQELPVRSDVMDKFNGDSAGKRKVLIASTTACAEGISLTGASRLVMLD 1296
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGG 580
WN RQAI+RA+R GQ+R V+VY L+ S T E +K RK W S MVF
Sbjct: 1297 SEWNHSKTRQAIARAFRRGQERTVYVYLLVASGTWEEEKYNSNRRKAWMSKMVFLGRYVD 1356
Query: 581 GNDQTTASEPLEDKILEEMA 600
+ Q ++ ++D++L+E+A
Sbjct: 1357 DSSQNRVTD-IDDEVLKELA 1375
>gi|414888229|tpg|DAA64243.1| TPA: hypothetical protein ZEAMMB73_472688 [Zea mays]
Length = 1179
Score = 327 bits (838), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 218/639 (34%), Positives = 338/639 (52%), Gaps = 59/639 (9%)
Query: 5 KDIDPPFATSPSRRAEWREYNNVDPSFLDDLNSRDSGFDSQTGCDP-FTHAQ--GTVWEL 61
KDI PP T R + D LD S F+ C P F+ + G VW
Sbjct: 542 KDIFPPMFTGKDHERPERNHFGQDGHVLDL-----SFFEI---CAPEFSKIKESGNVWAS 593
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+ D+ K+ HQR+ FEFIWKN+AG + L+E+ STS GG C+++H PG GKT L +
Sbjct: 594 IT-DLEPKLLAHQRKAFEFIWKNLAGSLQLEEMDGSTSRGG---CVVAHTPGAGKTLLLI 649
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV--- 178
FL +Y+K+HPR RP+++ P++ + TW EF+KWGI +P + L+ + K G
Sbjct: 650 SFLVSYLKVHPRSRPLVLTPKAAIHTWRTEFQKWGILLPLHVLHHSNRTSKLMGGLSSKL 709
Query: 179 -ALMDNRKRGRGKVGLIRYV--KLYSWKMGTGILGLSYRLFEKLVSGDE-------LSGI 228
A++ + + K I + KL W IL ++Y F L D ++ +
Sbjct: 710 QAVLKSFHQPSWKTMRIMHCLDKLCKWHEEPSILLMTYSSFLSLTKEDSKLRHQAFITKV 769
Query: 229 LLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE 288
L++ PGL + DEGH PR++ + + K L ++KT RI+LSGT FQNNF+E NTLSL R
Sbjct: 770 LMNNPGLLILDEGHNPRSNKSKLRKLLMKVKTEFRILLSGTVFQNNFEEYFNTLSLARPR 829
Query: 289 F-GEVL---------RTVRKSGREISKAKHASLISSIGR----CANHRDDEKLKELKEKI 334
F +V+ RT ++G+ + +G + H + + L E
Sbjct: 830 FVNDVMTTLVTESEKRTRSRTGKHQEALARHVFVERVGHKIESSSKHDRMDGISLLNELT 889
Query: 335 APFVNVHKGTVLQESLPGLRHSVVILQPDEFQK----RLCKAVEGVKSF-VELNYCVSLL 389
F++ +GT L LPG+R + ++P + Q+ +L + G + +E +++
Sbjct: 890 QGFIDSFEGTKLN-ILPGIRVYTLFMKPTDVQEEVLAKLLMPLSGNARYPLEYELLITIA 948
Query: 390 SVHPSLL-----PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST--NEKVLVF 442
S+HP L+ +F +V A + + K + AG K +F++ LL S+ E+VLVF
Sbjct: 949 SIHPWLINTTKCASTYFTPAEV--ASVDKYKRNFAAGCKAKFVIDLLHKSSFRGERVLVF 1006
Query: 443 SQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLAST 501
+ P+ ++ + F WR GQEVL + G Q++ R ++ N D + ++++AST
Sbjct: 1007 CHNVAPIAFLVTLIEIVFGWRLGQEVLVLQGDQELHVRSDVMDKFNSDRRGKRKVLIAST 1066
Query: 502 KACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561
AC EGI+L GASR+V+LD WN RQAI+RA+R GQ+R+V VY L+ S T E DK
Sbjct: 1067 TACAEGISLTGASRLVMLDSEWNHSKTRQAIARAFRPGQERMVFVYLLVASGTWEEDKYN 1126
Query: 562 RQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMA 600
RK W + MVF Q +E ++D++L+E+A
Sbjct: 1127 SNRRKAWIAKMVFFGRHFDDPLQNRVTE-IDDEVLKELA 1164
>gi|242047042|ref|XP_002461267.1| hypothetical protein SORBIDRAFT_02g043870 [Sorghum bicolor]
gi|241924644|gb|EER97788.1| hypothetical protein SORBIDRAFT_02g043870 [Sorghum bicolor]
Length = 1205
Score = 325 bits (834), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 208/636 (32%), Positives = 337/636 (52%), Gaps = 53/636 (8%)
Query: 5 KDIDPPFATSPSRRAEWREYNNVDPSFLDDLNSRDSGFDSQTGCDPFTHAQGTVWELVPR 64
KDI PP T + + + D LD S F+ + G VW +P
Sbjct: 568 KDIFPPMFTGKDHKRLEQSHFGQDDHVLDL-----SFFEICAPESSKSKESGNVWSSIPV 622
Query: 65 DVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFL 124
+ K+ HQR+ FEFIWKN+AG + L+E+ +STS GG C+++H PG GKT L + FL
Sbjct: 623 -LEPKLLAHQRKAFEFIWKNLAGSLQLEEMDDSTSRGG---CVVAHTPGAGKTLLLISFL 678
Query: 125 QAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVA----L 180
+Y+K+HPR RP+++ P++ + TW EF+KWGI +P + L+ + K G + +
Sbjct: 679 VSYLKVHPRSRPLVLTPKAAIHTWRREFQKWGILLPLHVLHHSNRTSKLMRGLSSKLQVV 738
Query: 181 MDNRKRGRGKVGLIRYV--KLYSWKMGTGILGLSYRLFEKLVSGDE-------LSGILLD 231
+ N + K I KL W IL ++Y F L D ++ +L++
Sbjct: 739 LKNFHQPTWKTMRIMDCLDKLCKWHEEPSILLMTYSSFLSLTKEDSKLHHQEFITKVLMN 798
Query: 232 LPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-G 290
PGL + DEGH PR++ + + K L ++KT RI+LSGT FQNNF+E NTLSL R F
Sbjct: 799 NPGLLILDEGHNPRSNKSKLRKLLMKVKTEFRILLSGTVFQNNFEEYFNTLSLARPRFVN 858
Query: 291 EVLRTV---------RKSGREISKAKHASLISSIGR----CANHRDDEKLKELKEKIAPF 337
+V+ T+ ++G+ + +G+ + H + + L + F
Sbjct: 859 DVMTTLVPESEKKTRSRTGKHQEALARRIFVERVGQKIESSSKHDRMDGISLLNDLTHGF 918
Query: 338 VNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV-----EGVKSFVELNYCVSLLSVH 392
++ +GT L LPG+ + ++P + Q+ + + + + +E+ +++ S+H
Sbjct: 919 IDSFEGTKLN-ILPGIHVYTLFMKPTDVQEEVLAKLSMPLADNARYLLEIELLITIASIH 977
Query: 393 PSLL-----PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST--NEKVLVFSQY 445
P L+ +F +V A++ + K + G K +F++ LL S+ E+VL+F
Sbjct: 978 PWLINTTRCASTYFTPAEV--ARVGKYKRNFAVGCKAKFVIDLLHKSSFRGERVLIFCHN 1035
Query: 446 IEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKAC 504
+ P+T +++ + F WR GQEVL + G Q++ R ++ N D + ++++AST AC
Sbjct: 1036 VAPITFLVKLIEIVFGWRLGQEVLVLQGDQELPVRSDVMDKFNSDREGKRKVLIASTTAC 1095
Query: 505 CEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQA 564
EGI+L GASR+V+LD WN RQAI+RA+R GQ+R+V VY L+ S T E DK
Sbjct: 1096 AEGISLTGASRLVMLDSEWNHSKTRQAIARAFRPGQERMVFVYLLVASGTWEEDKYNSNR 1155
Query: 565 RKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMA 600
RK W + MVF Q +E ++D++L+E+A
Sbjct: 1156 RKAWIAKMVFFGRYFDDPMQNRVTE-IDDEVLKELA 1190
>gi|224101205|ref|XP_002312184.1| chromatin remodeling complex subunit [Populus trichocarpa]
gi|222852004|gb|EEE89551.1| chromatin remodeling complex subunit [Populus trichocarpa]
Length = 1234
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 207/636 (32%), Positives = 341/636 (53%), Gaps = 45/636 (7%)
Query: 4 IKDIDPPFATSPSRRAEWREYNNVDPSFLDDLNSRDSGFDSQTGCD--PFTHAQGTVWEL 61
IK + PF AE + N D D + S F + T + P + VW+L
Sbjct: 587 IKYVSAPFMEHTGWTAESKPQNEEDLELKPDEDEGSSLFGNHTSGEDVPVSEVNDNVWDL 646
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P ++R K+ HQ++ FEF+WKN AG + ++ ++ GG C++SH PG GKT L +
Sbjct: 647 IP-ELRPKLHMHQKKAFEFLWKNTAGSLVPAHMEKTSKKIGG--CVVSHTPGAGKTFLII 703
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
FL +Y+KL P RP+++AP++ L TW +EF KW I +P + ++ S AL
Sbjct: 704 AFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPVPVHLIHGTRSSRAFKQTPAALR 763
Query: 182 DNRKRGRGKVGLIRYV--KLYSWKMGTGILGLSYRLFEKLVSGDE-------LSGILLDL 232
+ R V I K+ W +L + Y F L+ D ++ +L +
Sbjct: 764 GSGPRPSQDVVHILDCLEKMQKWHAQPSVLVMGYTSFLTLMREDSKYNHRKYMAKVLRES 823
Query: 233 PGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GE 291
PG+ + DEGH PR+ + + K L +++T RI+LSGT FQNNF E NTL+L R F E
Sbjct: 824 PGMLILDEGHNPRSAKSRLRKVLMKVETDLRILLSGTLFQNNFCEYFNTLTLARPMFIKE 883
Query: 292 VLRTV----RKSGREISKAKH-------ASLISSIGRCANHRDDEK----LKELKEKIAP 336
VL+ + ++ + KA+H I +I N + E+ L L+
Sbjct: 884 VLKALDPKFKRKKKGAQKARHLLESRARKFFIDNIASKINSDEAEEKMQGLNMLRNMTNG 943
Query: 337 FVNVHKGTVLQESLPGLRHSVVILQPDEFQK----RLCKAVEGVKSF-VELNYCVSLLSV 391
F++V++GT ++LPG++ +++ P + Q +L K +E + +E+ ++L S+
Sbjct: 944 FIDVYEGTA-SDTLPGIQIYTILMNPTDIQHQILVKLHKIMEKCPGYPLEVELLITLASI 1002
Query: 392 HPSLLP-----QQFFESFDVDSAKLARLKLDPEAGIKTRFLL-ILLELSTNEKVLVFSQY 445
HPSL+ ++F+ ++ + R D + G K F+L ++ + NEKVL+F
Sbjct: 1003 HPSLVNSSVCVKKFYNLEELMELEKLRF--DCKKGSKVMFVLNLVYRVVKNEKVLIFCHN 1060
Query: 446 IEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACC 505
I P+ L +E + F W++G+E+L + G+ ++ +R ++ + +R++LAS AC
Sbjct: 1061 IAPIKLFLELFENIFRWQQGKEILVLTGELELFERGRVMDKFEELGGPSRVLLASITACA 1120
Query: 506 EGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQAR 565
EGI+L ASRV+LLD WNP +QAI+RA+R GQ+++V+VY L+ + T+E DK RR A
Sbjct: 1121 EGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLATGTVEEDKYRRTAW 1180
Query: 566 KVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQ 601
K W S M+F S + + +E +ED +L E+ +
Sbjct: 1181 KEWVSRMIF-SEEFVEDPSRWQAEKIEDDVLREIVE 1215
>gi|255559547|ref|XP_002520793.1| ATP-dependent helicase, putative [Ricinus communis]
gi|223539924|gb|EEF41502.1| ATP-dependent helicase, putative [Ricinus communis]
Length = 1246
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 200/588 (34%), Positives = 326/588 (55%), Gaps = 47/588 (7%)
Query: 51 FTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISH 110
F+ VW L+P D+R K+ HQ++ FEF+WKNIAG I ++ ++ GG C++SH
Sbjct: 650 FSEENNNVWALIP-DLRMKLHLHQKKAFEFLWKNIAGSIIPANMEKASRKIGG--CVVSH 706
Query: 111 APGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELS 170
PG GKT L + FL +Y+KL P RP+++AP++ L TW +EF KW I +P + ++
Sbjct: 707 TPGAGKTFLIIAFLTSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWQIPVPVHLIHGRRSY 766
Query: 171 GKENNGAVALMDNRKRGRGKVGLIRYV-KLYSWKMGTGILGLSYRLFEKLVSGDE----- 224
VA K + + ++ + K+ W +L + Y F L+ D
Sbjct: 767 HNFRQKTVAFRGGPKPSQDVMHVLDCLEKIQKWHAQPSVLVMGYTSFLTLMREDSKFDHR 826
Query: 225 --LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
++ +L + PGL V DEGH PR+ + + K L +++T RI+LSGT FQNNF E NTL
Sbjct: 827 KYMAKVLRESPGLLVLDEGHNPRSTKSRLRKVLMKVQTDLRILLSGTLFQNNFCEYFNTL 886
Query: 283 SLVRQEF-GEVLRTV------RKSGREISKAKH-------ASLISSIGRCANHRDDEKLK 328
L R +F EVL+ + +K G E KA+H + I R + DE+++
Sbjct: 887 CLARPKFIREVLKELDPKFKRKKKGEE--KARHLLESRARKFFLDIIARKIDSNTDERMQ 944
Query: 329 ---ELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSF-----V 380
L++ + F++V++G + LPGL+ +++ + Q + + + S +
Sbjct: 945 GINMLRKITSRFIDVYEGGP-ADGLPGLQIYTILMNSTDIQHEILVKLHKIMSTYHGYPL 1003
Query: 381 ELNYCVSLLSVHPSLLP-----QQFFESFDVDSAKLARLKLDPEAGIKTRFLL-ILLELS 434
EL ++L S+HP L+ +FF ++D + ++ +LK D + G K F+L ++ +
Sbjct: 1004 ELELLITLASIHPWLVKTSNCVNKFF-TWD-ELVQIEKLKFDFKKGSKVMFVLNLVYRIV 1061
Query: 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
EKVL+F I P+ + +E + F W+ G+E++ + G ++ +R ++ +P S +
Sbjct: 1062 KKEKVLIFCHNIAPINIFVELFENVFRWQRGREIMVLTGDLELFERGRVMDKFEEPGSPS 1121
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
R++LAS AC EGI+L ASRV+LLD WNP +QAI+RA+R GQ++VV+VY L+ + T
Sbjct: 1122 RVLLASITACAEGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLATGT 1181
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGGNDQTT-ASEPLEDKILEEMAQ 601
LE DK R K W S+M+F S+ D + +E +ED +L EM +
Sbjct: 1182 LEEDKYSRTTWKEWVSSMIF--SEAFVEDPSRWQAEKIEDDVLREMVE 1227
>gi|356499183|ref|XP_003518422.1| PREDICTED: uncharacterized protein LOC100785036 [Glycine max]
Length = 1254
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 217/639 (33%), Positives = 335/639 (52%), Gaps = 54/639 (8%)
Query: 4 IKDIDPPFATSPSRRAEWREYNNVDPSFLDDLNSRDSGFDSQTGCDP----FTHAQGTVW 59
IK I PPF R E ++ D D D D D + VW
Sbjct: 607 IKYITPPFIQHSVRHQEEKQSPEEDSKTKPD---EDDDIDLLPALDSPEKLVSQENENVW 663
Query: 60 ELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGL 119
L+P +++ K+ HQ++ FEF+W+NIAG +D + ++ ++ GG C+ISH PG GKT L
Sbjct: 664 ALIP-ELKAKLHAHQKKAFEFLWQNIAGSMDPELMETASKRRGG--CVISHTPGAGKTFL 720
Query: 120 TLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLN--KPELSGKENNGA 177
+ FL +Y+KL P RP+++AP++ L TW +EF KW I IP Y ++ + K+ +
Sbjct: 721 IIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWDIPIPVYLIHGRRTYRVFKQKSSI 780
Query: 178 VALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE-------LSGILL 230
V + K L K+ W +L + Y F L+ D ++ +L
Sbjct: 781 VIPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKYMAKVLR 840
Query: 231 DLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF- 289
+ PG+ V DEGH PR+ + + K L +++T RI+LSGT FQNNF E NTL L R +F
Sbjct: 841 ESPGIMVLDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFI 900
Query: 290 GEVLRTV----RKSGREISKAKHASLISSIGR------------CANHRDDEK-LKELKE 332
EVL+ + ++ G+ KA H L+ S R N R+ + LK L+
Sbjct: 901 HEVLKALDSKYKRKGKVAKKASH--LLESRARKFFLDQIAKKIDSNNGRERRQGLKMLRN 958
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKR----LCKAVEGVKSF-VELNYCVS 387
F++V++G + LPGL+ +++ + Q L K + V + +EL ++
Sbjct: 959 VTNGFIDVYEGRS-SDGLPGLQIYTLLMNSTDTQHEILHELHKKMARVNGYPLELELLIT 1017
Query: 388 LLSVHPSLL-----PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILL-ELSTNEKVLV 441
L S+HP L+ ++FF + +L + K D G K +F+L L+ + EKVL+
Sbjct: 1018 LGSIHPWLVKSAVCAEKFFTPAQL--MELEKCKFDLRIGSKVKFVLSLIYRVVKKEKVLI 1075
Query: 442 FSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAST 501
F I P+ L +E F W +G+EVL + G+ ++ +R ++ +P A+I+LAS
Sbjct: 1076 FCHNIAPVKLFVEYFEKYFGWTKGREVLVLSGELELFERGRVMDKFEEPGGVAKILLASI 1135
Query: 502 KACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561
AC EGI+L ASRV++LD WNP +QAI+RA+R GQ++VV+VY L+ + +LE DK +
Sbjct: 1136 TACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYK 1195
Query: 562 RQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMA 600
R K W S+M+F + Q A E +ED IL EM
Sbjct: 1196 RTTWKEWVSSMIFSEAFVEDPSQWQA-EKIEDYILREMV 1233
>gi|449457450|ref|XP_004146461.1| PREDICTED: uncharacterized protein LOC101215377 [Cucumis sativus]
Length = 1252
Score = 317 bits (811), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 207/633 (32%), Positives = 329/633 (51%), Gaps = 43/633 (6%)
Query: 4 IKDIDPPFATSPSRRAEWREYNNVDPSFLDDLNSRDSGFDS-QTGCDPFTHAQGTVWELV 62
IKD+ PF E R DP D + F + D + VW L+
Sbjct: 603 IKDVSAPFMQHMGWSTEERRTEEKDPEHNSDEEEEMNIFSGLPSSDDTLSEENDNVWALI 662
Query: 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLV 122
P + R K+ HQ++ FEF+WKN+AG + + +T GG C+ISH PG GKT L +
Sbjct: 663 P-EFRNKLHLHQKKAFEFLWKNVAGSMVPALMDQATRKIGG--CVISHTPGAGKTFLIIS 719
Query: 123 FLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLN--KPELSGKENNGAVAL 180
FL +Y+KL P RP+++AP++ L TW +EF KW + +P + ++ + + N+ V
Sbjct: 720 FLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEVPVPIHLIHGRRTYRVFRANSKPVTF 779
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE-------LSGILLDLP 233
R L K+ W +L + Y F L+ D ++ +L P
Sbjct: 780 AGPRPTDDVMHILDCLEKIKKWHAHPSVLVMGYTSFLTLMREDAKFAHRKYMAKVLRQSP 839
Query: 234 GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEV 292
G+ + DEGH PR+ + + K L +++T RI+LSGT FQNNF E NTL L R +F EV
Sbjct: 840 GILILDEGHNPRSTKSRLRKVLMKVETDLRILLSGTLFQNNFCEYFNTLCLARPKFVNEV 899
Query: 293 LRTVR-KSGREISKAKHAS-------LISSIGRCANHRDDEK----LKELKEKIAPFVNV 340
L+ + K R+ KA H + I R + D+E L L+ F++V
Sbjct: 900 LKKLDPKFQRKKKKAPHLQEARARKFFLDKIARKIDAGDEEDRRDGLNMLRNMTGGFIDV 959
Query: 341 HKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSF-----VELNYCVSLLSVHPSL 395
++G ++ LPGL+ +++ + Q+ + + + + +EL ++L S+HP L
Sbjct: 960 YEGGS-KDGLPGLQIYTLLMNTTDIQQEILNKLHKIMAQFPGYPLELELLITLGSIHPWL 1018
Query: 396 L-----PQQFFESFDVDSAKLARLKLDPEAGIKTRFLL-ILLELSTNEKVLVFSQYIEPL 449
+ +FF D + +L + K D G K F+L ++ + EK+L+F I P+
Sbjct: 1019 VKTAVCANKFFT--DREMMELDKYKFDLRKGSKVMFVLNLVYRVVKKEKILIFCHNIAPV 1076
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509
L +E + F W+ G+E+L + G ++ +R ++ DP ++++LAS AC EGI+
Sbjct: 1077 RLFVELFENVFRWKRGREILALTGDLELFERGKVMDKFEDPVGPSKVLLASITACAEGIS 1136
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
L ASRV+LLD WNP +QAI+RA+R GQ +VV+VY L+ + TLE DK +R K W
Sbjct: 1137 LTAASRVILLDSEWNPSKTKQAIARAFRPGQLKVVYVYQLLVTGTLEEDKYKRTTWKEWV 1196
Query: 570 SNMVFPSSDGGGNDQTT-ASEPLEDKILEEMAQ 601
S+M+F S+ D + +E +ED++L EM +
Sbjct: 1197 SSMIF--SEAFVEDPSKWQAEKIEDEVLREMVE 1227
>gi|449529126|ref|XP_004171552.1| PREDICTED: uncharacterized LOC101215377 [Cucumis sativus]
Length = 1252
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 207/633 (32%), Positives = 329/633 (51%), Gaps = 43/633 (6%)
Query: 4 IKDIDPPFATSPSRRAEWREYNNVDPSFLDDLNSRDSGFDS-QTGCDPFTHAQGTVWELV 62
IKD+ PF E R DP D + F + D + VW L+
Sbjct: 603 IKDVSAPFMQHMGWSTEERRTEEKDPEHNSDEEEEMNIFSGLPSSDDTLSEENDNVWALI 662
Query: 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLV 122
P + R K+ HQ++ FEF+WKN+AG + + +T GG C+ISH PG GKT L +
Sbjct: 663 P-EFRNKLHLHQKKAFEFLWKNVAGSMVPALMDQATRKIGG--CVISHTPGAGKTFLIIS 719
Query: 123 FLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLN--KPELSGKENNGAVAL 180
FL +Y+KL P RP+++AP++ L TW +EF KW + +P + ++ + + N+ V
Sbjct: 720 FLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEVPVPIHLIHGRRTYRVFRANSKPVTF 779
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE-------LSGILLDLP 233
R L K+ W +L + Y F L+ D ++ +L P
Sbjct: 780 AGPRPTDDVMHILDCLEKIKKWHAHPSVLVMGYTSFLTLMREDAKFAHRKYMAKVLRQSP 839
Query: 234 GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEV 292
G+ + DEGH PR+ + + K L +++T RI+LSGT FQNNF E NTL L R +F EV
Sbjct: 840 GILILDEGHNPRSTKSRLRKVLMKVETDLRILLSGTLFQNNFCEYFNTLCLARPKFVNEV 899
Query: 293 LRTVR-KSGREISKAKHAS-------LISSIGRCANHRDDEK----LKELKEKIAPFVNV 340
L+ + K R+ KA H + I R + D+E L L+ F++V
Sbjct: 900 LKKLDPKFQRKKRKAPHLQEARARKFFLDKIARKIDAGDEEDRRDGLNMLRNMTGGFIDV 959
Query: 341 HKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSF-----VELNYCVSLLSVHPSL 395
++G ++ LPGL+ +++ + Q+ + + + + +EL ++L S+HP L
Sbjct: 960 YEGGS-KDGLPGLQIYTLLMNTTDIQQEILNKLHKIMAQFPGYPLELELLITLGSIHPWL 1018
Query: 396 L-----PQQFFESFDVDSAKLARLKLDPEAGIKTRFLL-ILLELSTNEKVLVFSQYIEPL 449
+ +FF D + +L + K D G K F+L ++ + EK+L+F I P+
Sbjct: 1019 VKTAVCANKFFT--DREMMELDKYKFDLRKGSKVMFVLNLVYRVVKKEKILIFCHNIAPV 1076
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509
L +E + F W+ G+E+L + G ++ +R ++ DP ++++LAS AC EGI+
Sbjct: 1077 RLFVELFENVFRWKRGREILALTGDLELFERGKVMDKFEDPVGPSKVLLASITACAEGIS 1136
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
L ASRV+LLD WNP +QAI+RA+R GQ +VV+VY L+ + TLE DK +R K W
Sbjct: 1137 LTAASRVILLDSEWNPSKTKQAIARAFRPGQLKVVYVYQLLVTGTLEEDKYKRTTWKEWV 1196
Query: 570 SNMVFPSSDGGGNDQTT-ASEPLEDKILEEMAQ 601
S+M+F S+ D + +E +ED++L EM +
Sbjct: 1197 SSMIF--SEAFVEDPSKWQAEKIEDEVLREMVE 1227
>gi|356553755|ref|XP_003545218.1| PREDICTED: uncharacterized protein LOC100811703 [Glycine max]
Length = 1261
Score = 316 bits (809), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 217/642 (33%), Positives = 339/642 (52%), Gaps = 60/642 (9%)
Query: 4 IKDIDPPFATSPSRRAEWREYNNVDPSFLDDLNSR---DSGFDSQTGCD----PFTHAQG 56
IK I PPF + + W + P +D ++ D D D P +
Sbjct: 614 IKYITPPFI----QHSVWHQEEKQIPE--EDSKTKANEDDDIDLLPALDSPEKPVSQEND 667
Query: 57 TVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGK 116
VW L+P +++ K+ HQ++ FEF+W+NIAG +D ++ ++ GG C++SH PG GK
Sbjct: 668 NVWVLIP-ELKAKLHAHQKKAFEFLWQNIAGSMDPGLMEAASKRRGG--CVVSHTPGAGK 724
Query: 117 TGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLN--KPELSGKEN 174
T L + FL +Y+KL P RP+++AP++ L TW +EF KW I IP Y ++ + K+
Sbjct: 725 TFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWDIPIPVYLIHGRRTYRVFKQK 784
Query: 175 NGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE-------LSG 227
+ V + K L K+ W +L + Y F L+ D ++
Sbjct: 785 SSIVIPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKYMAK 844
Query: 228 ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
+L + PG+ V DEGH PR+ + + K L +++T RI+LSGT FQNNF E NTL L R
Sbjct: 845 VLRESPGVMVLDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLCLARP 904
Query: 288 EF-GEVLRTV----RKSGREISKAKHASLISSIGR------------CANHRDDEK-LKE 329
+F EVL+ + ++ G+ KA H L+ S R +N R+ K LK
Sbjct: 905 KFIHEVLKALDPKYKRKGKVAKKASH--LLESRARKFFLDQIAKKIDSSNGRERRKGLKM 962
Query: 330 LKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKR----LCKAVEGVKSF-VELNY 384
L+ F++V++G + LPGL+ +++ + Q L K + V + +EL
Sbjct: 963 LRNVTNGFIDVYEGGS-SDGLPGLQIYTLLMNSTDTQHEILHELHKKMAKVNGYPLELEL 1021
Query: 385 CVSLLSVHPSLL-----PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILL-ELSTNEK 438
++L S+HP L+ ++FF + +L + K D G K +F+L L+ + EK
Sbjct: 1022 LITLGSIHPWLVKSAVCAEKFFTQAQL--MELEKCKFDLRIGSKVKFVLSLIYRVVKKEK 1079
Query: 439 VLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498
VL+F I P+ L +E F W +G+EVL + G+ ++ +R ++ +P A+I+L
Sbjct: 1080 VLIFCHNIAPVKLFVEYFEKYFGWTKGREVLVLTGELELFERGRVMDKFEEPGGVAKILL 1139
Query: 499 ASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWD 558
AS AC EGI+L ASRV++LD WNP +QAI+RA+R GQ++VV+VY L+ + +LE D
Sbjct: 1140 ASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEED 1199
Query: 559 KLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMA 600
K +R K W S+M+F + Q A E +ED IL EM
Sbjct: 1200 KYKRTTWKEWVSSMIFSEAFVEDPSQWQA-EKIEDDILREMV 1240
>gi|15241352|ref|NP_197542.1| chromatin remodeling 42 [Arabidopsis thaliana]
gi|332005458|gb|AED92841.1| chromatin remodeling 42 [Arabidopsis thaliana]
Length = 1261
Score = 312 bits (799), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 211/639 (33%), Positives = 346/639 (54%), Gaps = 50/639 (7%)
Query: 4 IKDIDPPFATSPSRRAEWREYNNVD-PSFLDDLNSRDSGFDSQTGCDPFTHAQGT--VWE 60
IKD+ PFA E + D + L ++ F + A+ + VW
Sbjct: 611 IKDVSAPFAEHKKWTIETKHIEEDDIKTKLSHKEAQTKDFSMISDSSEMLAAEESDNVWA 670
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
L+P+ +++K+ HQR FEF+W+N+AG ++ L + TS G GC+ISH+PG GKT L
Sbjct: 671 LIPK-LKRKLHVHQRRAFEFLWRNVAGSVE-PSLMDPTS-GNIGGCVISHSPGAGKTFLI 727
Query: 121 LVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLN-KPELSGKENNGAVA 179
+ FL +Y+KL P RP+++AP++ L TW +EF KW I +P + ++ + + N V
Sbjct: 728 IAFLTSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPVPVHLIHGRRTYCTFKQNKTVQ 787
Query: 180 LMDNRKRGRGKVGLIRYV-KLYSWKMGTGILGLSYRLFEKLVSGDE-------LSGILLD 231
K R + ++ + K+ W +L + Y F L+ D ++ +L +
Sbjct: 788 FNGVPKPSRDVMHVLDCLEKIQKWHAHPSVLVMGYTSFTTLMREDSKFAHRKYMAKVLRE 847
Query: 232 LPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-G 290
PGL V DEGH PR+ + + KAL ++ T RI+LSGT FQNNF E NTL L R +F
Sbjct: 848 SPGLLVLDEGHNPRSTKSRLRKALMKVGTDLRILLSGTLFQNNFCEYFNTLCLARPKFIH 907
Query: 291 EVLRTVR---KSGREISKAKHASLISSIGR------CANHRD----DEKLK---ELKEKI 334
EVL + K+ ++KA H L+ + R A D DE+L+ LK
Sbjct: 908 EVLMELDQKFKTNHGVNKAPH--LLENRARKLFLDIIAKKIDASVGDERLQGLNMLKNMT 965
Query: 335 APFVNVHKGTVLQ--ESLPGLRHSVVILQPDEFQKR-LCKAVEGVKSF----VELNYCVS 387
F++ ++G+ ++LPGL+ +++ + Q + L K + +K++ +E+ ++
Sbjct: 966 NGFIDNYEGSGSGSGDALPGLQIYTLVMNSTDIQHKILTKLQDVIKTYFGYPLEVELQIT 1025
Query: 388 LLSVHPSLLPQ-----QFFESFDVDSAKLARLKLDPEAGIKTRFLL-ILLELSTNEKVLV 441
L ++HP L+ +FF ++ +++ +LK D + G K F+L ++ + EK+L+
Sbjct: 1026 LAAIHPWLVTSSNCCTKFFNPQEL--SEIGKLKHDAKKGSKVMFVLNLIFRVVKREKILI 1083
Query: 442 FSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAST 501
F I P+ + E + F W+ G+E+L + G ++ +R I+ +P + +R++LAS
Sbjct: 1084 FCHNIAPIRMFTELFENIFRWQRGREILTLTGDLELFERGRVIDKFEEPGNPSRVLLASI 1143
Query: 502 KACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561
AC EGI+L ASRV++LD WNP +QAI+RA+R GQ++VV+VY L++ TLE DK R
Sbjct: 1144 TACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYR 1203
Query: 562 RQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMA 600
R K W S M+F S + + +E +ED IL E+
Sbjct: 1204 RTTWKEWVSCMIF-SEEFVADPSLWQAEKIEDDILREIV 1241
>gi|297818740|ref|XP_002877253.1| hypothetical protein ARALYDRAFT_484766 [Arabidopsis lyrata subsp.
lyrata]
gi|297323091|gb|EFH53512.1| hypothetical protein ARALYDRAFT_484766 [Arabidopsis lyrata subsp.
lyrata]
Length = 1254
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 203/650 (31%), Positives = 341/650 (52%), Gaps = 70/650 (10%)
Query: 4 IKDIDPPFATSPSRRAEWREYNNVDPSFLDDLNS---RDSGFDSQTGCDPFTHA------ 54
IK + PFA E ++ N DD+N+ G ++ T P +
Sbjct: 603 IKYVSAPFAQHKKWTTETKQINE------DDINTTKVNQDGVENHTFTIPVASSDMPSAE 656
Query: 55 -QGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPG 113
VW L+P+ +++K+ HQ++ FEF+WKN+AG + + S+ GG C++SH PG
Sbjct: 657 ESDNVWSLIPQ-LKRKLHLHQKKAFEFLWKNLAGSVIPAMMDPSSEKIGG--CVVSHTPG 713
Query: 114 TGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKE 173
GKT L + FL +Y+K+ P RP+++AP++ L TW +EF KW I +P + L+
Sbjct: 714 AGKTFLIIAFLASYLKIFPGKRPLVLAPKTTLYTWYKEFIKWEIPVPVHLLHGRRTYCVS 773
Query: 174 NNGAVALMDNRKRGRGKVGLIRYV-KLYSWKMGTGILGLSYRLFEKLVSGDE-------L 225
+ K + + ++ + K+ W +L + Y F+ L+ D +
Sbjct: 774 KENTIQFKGIPKPSQDVMHVLDCLDKIQKWHAQPSVLVMGYTSFQTLMREDSKFAHRKYM 833
Query: 226 SGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
+ +L + PGL V DEGH PR+ + + KAL ++ T RI+LSGT FQNNF E NTL L
Sbjct: 834 AKVLRESPGLLVLDEGHNPRSTKSRLRKALMKVDTDLRILLSGTLFQNNFCEYFNTLCLA 893
Query: 286 RQEF-GEVLRTVRK---SGREISKAKH-------ASLISSIGRCANHR-DDEKLK---EL 330
R +F EVL + + + + + KA H + I + + + DE+L+ L
Sbjct: 894 RPKFVHEVLVELDQKFQTNQAVEKAPHLLENRARKFFLDIIAKKIDTKVGDERLQGLNML 953
Query: 331 KEKIAPFVNVHKGTVLQ--ESLPGLRHSVVILQPDEFQKRLCKAVEGVKSF-----VELN 383
+ + F++ ++G+ + LPGL+ +++ + Q + ++ + S +EL
Sbjct: 954 RNMTSGFIDNYEGSGSGSGDVLPGLQIYTLLMNSTDVQHKSLTKLQNIMSTYHGYPLELE 1013
Query: 384 YCVSLLSVHPSLL-----------PQQFFESFDVDSAKLARLKLDPEAGIKTRFLL-ILL 431
++L ++HP L+ P++ FE + +LK D + G K F+L ++
Sbjct: 1014 LLITLAAIHPWLVKTTTCCTKFFNPEELFE--------IEKLKHDAKKGSKVMFVLNLVF 1065
Query: 432 ELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPS 491
+ EK+L+F I P+ L +E + F W+ G+E+L + G ++ +R I+ +P
Sbjct: 1066 RVVKREKILIFCHNIAPIRLFLELFENVFRWQRGRELLTLTGDLELFERGRVIDKFEEPG 1125
Query: 492 SQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLIT 551
Q+R++LAS AC EGI+L ASRV++LD WNP +QAI+RA+R GQ++VV+VY L++
Sbjct: 1126 GQSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLS 1185
Query: 552 SETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQ 601
TLE DK RR K W S+M+F S + + +E +ED +L E+ +
Sbjct: 1186 RGTLEEDKYRRTTWKEWVSSMIF-SEEFVEDPSQWQAEKIEDDVLREIVE 1234
>gi|356569282|ref|XP_003552832.1| PREDICTED: uncharacterized protein LOC100781856 [Glycine max]
Length = 1243
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 217/641 (33%), Positives = 342/641 (53%), Gaps = 53/641 (8%)
Query: 4 IKDIDPPFATSPSRRAEWREYNNVDPSFLDDLNSRDSGFDSQTGCDPF----THAQGTVW 59
IK I PPF + +E + + S+D F + P + VW
Sbjct: 594 IKYITPPFVSQVQNHVWHQEEKQCNGKDTKEKASKDDDFHLLSTHAPTDEHNSMEHDNVW 653
Query: 60 ELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGL 119
+L+P+ R+K+ HQ++ FEF+W+NI G ++ +L ++ S G GC+ISHAPG GKT L
Sbjct: 654 KLIPQ-FREKLHDHQKKAFEFLWQNIGGSME-PKLMDAESKRRG-GCVISHAPGAGKTFL 710
Query: 120 TLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGK--ENNGA 177
+ FL +Y+KL P +P+I+AP+ L TW +EF KW I +P Y ++ + K E N
Sbjct: 711 IIAFLVSYLKLFPGKKPLILAPKGTLYTWCKEFNKWEISMPVYLIHGRGGTQKDTEQNSI 770
Query: 178 V--ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV-SGDE------LSGI 228
V + K + + ++ +KL W+ +L +SY F L+ G E ++
Sbjct: 771 VLPGFPNPNKYVKHVLDCLQKIKL--WQEKPSVLVMSYTAFLALMREGSEFAHRKYMAKA 828
Query: 229 LLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE 288
L + PG+ + DEGH PR+ + + K L ++KT RI+LSGT FQNNF E NTL L R +
Sbjct: 829 LREGPGILILDEGHNPRSTKSRLRKGLMKLKTDLRILLSGTLFQNNFCEYFNTLCLARPK 888
Query: 289 F-GEVLRTV----RKSGREISKAKHASLISSIGR--------------CANHRDDEKLKE 329
F EVL T+ R+ + + KA H L+ S R N R + L
Sbjct: 889 FISEVLDTLDPITRRKSKTVEKAGH--LLESRARKLFLDKIAKKIDSGIGNERM-QGLNM 945
Query: 330 LKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQK----RLCKAVEGVKSF-VELNY 384
L+E FV+V++ +S PGL+ +++ + Q+ +L V+ + +EL
Sbjct: 946 LRETTNGFVDVYESENF-DSAPGLQIYTLLMNTTDKQREILPKLHTRVDECNGYPLELEL 1004
Query: 385 CVSLLSVHPSLLPQQFFES--FDVDSAK-LARLKLDPEAGIKTRFLL-ILLELSTNEKVL 440
V+L S+HP L+ + F D K L + K D +AG K +F+L ++ + EKVL
Sbjct: 1005 LVTLGSIHPWLVKTTSCANKFFTADQLKQLDKYKYDMKAGSKVKFVLSLVFRVMQREKVL 1064
Query: 441 VFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500
+F + P+ L++E F W++ +E+L + G+ D+ +R I+ + ++++LAS
Sbjct: 1065 IFCHNLAPVKLLIELFEMFFKWKKDREILLLSGELDLFERGKVIDKFEEHGGASKVLLAS 1124
Query: 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKL 560
AC EGI+L ASRV+ LD WNP +QAI+RA+R GQ+++V+VY L+ + TLE DK
Sbjct: 1125 ITACAEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQEKMVYVYQLLVTGTLEEDKY 1184
Query: 561 RRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQ 601
+R K W S+M+F S N + + +ED IL EM +
Sbjct: 1185 KRTTWKEWVSSMIF-SEAFEENLSHSRAVNIEDDILREMVE 1224
>gi|297812227|ref|XP_002873997.1| hypothetical protein ARALYDRAFT_351139 [Arabidopsis lyrata subsp.
lyrata]
gi|297319834|gb|EFH50256.1| hypothetical protein ARALYDRAFT_351139 [Arabidopsis lyrata subsp.
lyrata]
Length = 1260
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 210/647 (32%), Positives = 353/647 (54%), Gaps = 66/647 (10%)
Query: 4 IKDIDPPFATSPSRRAEWREYNNVDPSFLDDLNSRDSGFDSQTGCDPFTHAQGT------ 57
IKD+ PFA E ++ DD+ ++ S + +T + FT + +
Sbjct: 610 IKDVSAPFAEHKKWTMETKQLEE------DDIKTKLSHKEGET--EDFTMSSDSSKILAA 661
Query: 58 -----VWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAP 112
VW L+P+ +++K+ HQR FEF+W+N+AG ++ L + TS G GC+ISH+P
Sbjct: 662 EESENVWALIPQ-LKRKLHMHQRRAFEFLWRNLAGSVE-PSLMDPTSDNIG-GCVISHSP 718
Query: 113 GTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLN-KPELSG 171
G GKT L + FL +Y+KL P RP+++AP++ L TW +EF KW I +P + ++ +
Sbjct: 719 GAGKTFLIIAFLTSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPVPVHLIHGRRTYCT 778
Query: 172 KENNGAVALMDNRKRGRGKVGLIRYV-KLYSWKMGTGILGLSYRLFEKLVSGDE------ 224
+ N + K + + ++ + K+ W +L + Y F L+ D
Sbjct: 779 FKQNSTIQFNGVPKPSQDVMHVLDCLEKIQKWHAHPSVLVMGYTSFLTLMREDSKFAHRK 838
Query: 225 -LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS 283
++ +L + PGL V DEGH PR+ + + KAL ++ T RI+LSGT FQNNF E NTL
Sbjct: 839 YMAKVLRESPGLLVLDEGHNPRSTKSRLRKALMKVGTDLRILLSGTLFQNNFCEYFNTLC 898
Query: 284 LVRQEF-GEVLRTVR---KSGREISKAKHASLISSIGR------CANHRD----DEKLK- 328
L R +F EVL + K+ + ++KA H L+ + R A D DE+L+
Sbjct: 899 LARPKFIHEVLMELDQKFKTNQSVNKAPH--LLENRARKFFIDIIAKKIDAGVGDERLQG 956
Query: 329 --ELKEKIAPFVNVHKGTVLQ--ESLPGLRHSVVILQPDEFQKR-LCKAVEGVKSF---- 379
LK F++ ++G+ ++LPGL+ +++ + Q + L K + +K++
Sbjct: 957 INMLKNMTNSFIDNYEGSGSGSGDALPGLQIYTLVMNSTDIQHKILTKLQDVIKTYFGYP 1016
Query: 380 VELNYCVSLLSVHPSLLP-----QQFFESFDVDSAKLARLKLDPEAGIKTRFLL-ILLEL 433
+E+ ++L ++HP L+ ++FF ++ ++ +LK D + G K F+L ++ +
Sbjct: 1017 LEVELQITLAAIHPWLVTSSNCCKKFFNPQEL--LEIEKLKHDAKKGSKVMFVLNLVYRV 1074
Query: 434 STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQ 493
EK+L+F I P+ + E + F W+ G+E+L + G ++ +R I+ +P +
Sbjct: 1075 VKREKILIFCHNIAPIRMFTELFENVFRWQRGREILTLTGDLELFERGRVIDKFEEPGNP 1134
Query: 494 ARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553
+R++LAS AC EGI+L ASRV++LD WNP +QAI+RA+R GQ++VV+VY L++
Sbjct: 1135 SRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRG 1194
Query: 554 TLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMA 600
TLE DK RR K W S+M+F S + + +E +ED +L E+
Sbjct: 1195 TLEEDKYRRTTWKEWVSSMIF-SEEFVADPSLWQAEKIEDDVLREIV 1240
>gi|75214627|gb|ABA18099.1| SNF2 domain-containing protein [Olimarabidopsis pumila]
Length = 1256
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 204/650 (31%), Positives = 338/650 (52%), Gaps = 70/650 (10%)
Query: 4 IKDIDPPFATSPSRRAEWREYNNVDPSFLDDLNS---RDSGFDSQTGCDPFTHA------ 54
IK++ PFA E + N DD+N+ G +S + P +
Sbjct: 605 IKNVSAPFAQHKKWTTETKHVNE------DDINTTKVNQEGVESHSFTKPVASSDMPSAE 658
Query: 55 -QGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPG 113
VW L+P+ ++ K+ HQ++ FEF+W+N+AG + + S+ GG C+ISH PG
Sbjct: 659 ESDNVWSLIPQ-LKIKLHLHQKKAFEFLWRNLAGSMVPAMMDASSEKIGG--CVISHTPG 715
Query: 114 TGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKE 173
GKT L + FL +Y+K+ P RP+++AP++ L TW +EF KW I +P + L+
Sbjct: 716 AGKTFLIIAFLASYLKIFPGKRPLVLAPKTTLYTWYKEFIKWEIPVPVHLLHGRRTYCVA 775
Query: 174 NNGAVALMDNRKRGRGKVGLIRYV-KLYSWKMGTGILGLSYRLFEKLVSGDE-------L 225
+ K + + ++ + K+ W +L + Y F L+ D +
Sbjct: 776 KENTIQFKGIPKPSQDVMHVLDCLDKIQKWHAQPSVLVMGYTSFLTLMREDSKFAHRKYM 835
Query: 226 SGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
+ +L + PGL V DEGH PR+ + + KAL ++ T RI+LSGT FQNNF E NTL L
Sbjct: 836 AKVLKESPGLLVLDEGHNPRSTKSRLRKALMKVDTDLRILLSGTLFQNNFCEYFNTLCLA 895
Query: 286 RQEF-GEVLRTVRK---SGREISKAKH-------ASLISSIGRCANHR-DDEKLK---EL 330
R +F EVL + + + + KA H + I + + + DE+L+ L
Sbjct: 896 RPKFVHEVLMELDQKFETNQAAQKAPHLLENRARKFFLDIIAKKIDTKVGDERLQGLNML 955
Query: 331 KEKIAPFVNVHKGTVLQ--ESLPGLRHSVVILQPDEFQKRLCKAVEGVKSF-----VELN 383
+ + F++ ++G+ + LPGL+ +++ + Q + ++ + S +EL
Sbjct: 956 RNMTSGFIDNYEGSGSGSGDVLPGLQIYTLLMNSTDIQHKSLTKLQNIMSTYHGYPLELE 1015
Query: 384 YCVSLLSVHPSLL-----------PQQFFESFDVDSAKLARLKLDPEAGIKTRFLL-ILL 431
++L ++HP L+ PQ+ FE + +LK D + G K F+L ++
Sbjct: 1016 LLITLAAIHPWLVKTTTCCTKFFNPQELFE--------IEKLKHDAKKGSKVMFVLNLVF 1067
Query: 432 ELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPS 491
+ EK+L+F I P+ L +E + F W+ G+E+L + G ++ +R I+ +P
Sbjct: 1068 RVVKREKILIFCHNIAPIRLFLELFENVFRWKRGRELLTLTGDLELFERGRVIDKFEEPG 1127
Query: 492 SQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLIT 551
Q+R++LAS AC EGI+L ASRV++LD WNP +QAI+RA+R GQ++VV+VY L++
Sbjct: 1128 GQSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLS 1187
Query: 552 SETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQ 601
TLE DK RR K W S+M+F S + + +E +ED +L E+ +
Sbjct: 1188 RGTLEEDKYRRTTWKEWVSSMIF-SEEFVEDPSQWQAEKIEDDVLREIVE 1236
>gi|297736548|emb|CBI25419.3| unnamed protein product [Vitis vinifera]
Length = 1635
Score = 309 bits (791), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 210/655 (32%), Positives = 338/655 (51%), Gaps = 82/655 (12%)
Query: 4 IKDIDPPF--ATSPSRRAEWREYNNVDPSFLDDLNSRDSGFD----SQTGCDPFTHAQGT 57
IKD+ PPF T EWR+ N + + GF+ + P +
Sbjct: 944 IKDVSPPFFQPTGWITNREWRDEENSKRK-----QAENDGFNLFSIPASSDTPLSEGNDN 998
Query: 58 VWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT 117
VW LVP D+RKK+ HQ++ FEF+WKNIAG + ++ GG C+ISH+PG GKT
Sbjct: 999 VWALVP-DLRKKLRLHQKKAFEFLWKNIAGSMVPALMEQEVKRRGG--CVISHSPGAGKT 1055
Query: 118 GLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLN------------ 165
L + FL +Y+KL P RP+++AP++ L TW +E KW + +P Y ++
Sbjct: 1056 FLVISFLVSYLKLFPGKRPLVLAPKTTLYTWYKEIIKWKVPVPVYQIHGCRTYRYEIYKH 1115
Query: 166 KPELSG---KENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222
K E S + N + ++D + K+ W IL + Y F L+
Sbjct: 1116 KVETSPGIPRPNQDVMHVLDCLE------------KIQKWHAHPSILLMGYTSFLSLMRE 1163
Query: 223 DE-------LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
D + +L PG+ V DEGH PR+ + + KAL ++KT RI+LSGT FQNNF
Sbjct: 1164 DSKFIHRRYMGEVLRQSPGILVLDEGHNPRSTGSRLRKALMKVKTNLRILLSGTLFQNNF 1223
Query: 276 QELENTLSLVRQEF-GEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKI 334
E NTL L R +F EVLR + + + S+ R DE K + +
Sbjct: 1224 SEYFNTLCLARPKFVNEVLRELDPKFKRNKNRRKRRYSSTESRARKFFTDEIAKRINSNV 1283
Query: 335 ---------------APFVNVHKGTVLQESLPGLRHSVVILQP----DEFQKRLCKAVEG 375
+ F++V++G ++LPGL+ ++++ +F +L K +
Sbjct: 1284 PEEQIEGLNMLRNLTSKFIDVYEGGS-SDNLPGLQVYTLLMKSTTIQQQFLSKLQKKKDE 1342
Query: 376 VKSF-VELNYCVSLLSVHPSLL-----PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLI 429
K + +EL V+L S+HP L+ ++F ++ +L + K D + G K +F+L
Sbjct: 1343 YKGYPLELELLVTLGSIHPWLITTAACADKYFSREEL--LELKKHKDDVKKGSKVKFVLS 1400
Query: 430 LLE--LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVL 487
L+ + EK+L+F I P+ L ++ + W++G++VL + G ++ +R ++
Sbjct: 1401 LVNRCIIRKEKILIFCHNISPINLFVDIFDKLYKWKKGEDVLVLQGDLELFERGRVMDQF 1460
Query: 488 NDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVY 547
+P ++++LAS AC EGI+L ASRV+LLD WNP ++QA++RA+R GQ+RVV+VY
Sbjct: 1461 EEPGGASKVLLASITACAEGISLTAASRVILLDTEWNPSKQKQAVARAFRPGQERVVYVY 1520
Query: 548 HLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTT-ASEPLEDKILEEMAQ 601
L+ ++TLE +K R K W S+M+F S+ D + +E +ED +L E+ +
Sbjct: 1521 QLLETDTLEEEKNSRTNWKEWVSSMIF--SEAFVEDPSCWQAEKIEDDLLREIVE 1573
>gi|359486371|ref|XP_002273775.2| PREDICTED: uncharacterized protein LOC100250037 [Vitis vinifera]
Length = 1256
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 210/655 (32%), Positives = 338/655 (51%), Gaps = 82/655 (12%)
Query: 4 IKDIDPPF--ATSPSRRAEWREYNNVDPSFLDDLNSRDSGFD----SQTGCDPFTHAQGT 57
IKD+ PPF T EWR+ N + + GF+ + P +
Sbjct: 602 IKDVSPPFFQPTGWITNREWRDEENSKRK-----QAENDGFNLFSIPASSDTPLSEGNDN 656
Query: 58 VWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT 117
VW LVP D+RKK+ HQ++ FEF+WKNIAG + ++ GG C+ISH+PG GKT
Sbjct: 657 VWALVP-DLRKKLRLHQKKAFEFLWKNIAGSMVPALMEQEVKRRGG--CVISHSPGAGKT 713
Query: 118 GLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLN------------ 165
L + FL +Y+KL P RP+++AP++ L TW +E KW + +P Y ++
Sbjct: 714 FLVISFLVSYLKLFPGKRPLVLAPKTTLYTWYKEIIKWKVPVPVYQIHGCRTYRYEIYKH 773
Query: 166 KPELSG---KENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222
K E S + N + ++D + K+ W IL + Y F L+
Sbjct: 774 KVETSPGIPRPNQDVMHVLDCLE------------KIQKWHAHPSILLMGYTSFLSLMRE 821
Query: 223 DE-------LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
D + +L PG+ V DEGH PR+ + + KAL ++KT RI+LSGT FQNNF
Sbjct: 822 DSKFIHRRYMGEVLRQSPGILVLDEGHNPRSTGSRLRKALMKVKTNLRILLSGTLFQNNF 881
Query: 276 QELENTLSLVRQEF-GEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKI 334
E NTL L R +F EVLR + + + S+ R DE K + +
Sbjct: 882 SEYFNTLCLARPKFVNEVLRELDPKFKRNKNRRKRRYSSTESRARKFFTDEIAKRINSNV 941
Query: 335 ---------------APFVNVHKGTVLQESLPGLRHSVVILQP----DEFQKRLCKAVEG 375
+ F++V++G ++LPGL+ ++++ +F +L K +
Sbjct: 942 PEEQIEGLNMLRNLTSKFIDVYEGGS-SDNLPGLQVYTLLMKSTTIQQQFLSKLQKKKDE 1000
Query: 376 VKSF-VELNYCVSLLSVHPSLL-----PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLI 429
K + +EL V+L S+HP L+ ++F ++ +L + K D + G K +F+L
Sbjct: 1001 YKGYPLELELLVTLGSIHPWLITTAACADKYFSREEL--LELKKHKDDVKKGSKVKFVLS 1058
Query: 430 LLE--LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVL 487
L+ + EK+L+F I P+ L ++ + W++G++VL + G ++ +R ++
Sbjct: 1059 LVNRCIIRKEKILIFCHNISPINLFVDIFDKLYKWKKGEDVLVLQGDLELFERGRVMDQF 1118
Query: 488 NDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVY 547
+P ++++LAS AC EGI+L ASRV+LLD WNP ++QA++RA+R GQ+RVV+VY
Sbjct: 1119 EEPGGASKVLLASITACAEGISLTAASRVILLDTEWNPSKQKQAVARAFRPGQERVVYVY 1178
Query: 548 HLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTT-ASEPLEDKILEEMAQ 601
L+ ++TLE +K R K W S+M+F S+ D + +E +ED +L E+ +
Sbjct: 1179 QLLETDTLEEEKNSRTNWKEWVSSMIF--SEAFVEDPSCWQAEKIEDDLLREIVE 1231
>gi|15229135|ref|NP_189853.1| chromatin remodeling 38 [Arabidopsis thaliana]
gi|7523392|emb|CAB86450.1| putative protein [Arabidopsis thaliana]
gi|332644224|gb|AEE77745.1| chromatin remodeling 38 [Arabidopsis thaliana]
Length = 1256
Score = 308 bits (789), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 204/644 (31%), Positives = 340/644 (52%), Gaps = 58/644 (9%)
Query: 4 IKDIDPPFATSPSRRAEWREYNNVDPSFLDDLNS---RDSGFDSQTGCDPFTHA------ 54
IK + PFA E ++ N DD+N+ G +S T P +
Sbjct: 605 IKHVSAPFARHKKWTTETKQINE------DDINTTIVNQDGVESHTFTIPVASSDMPSAE 658
Query: 55 -QGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPG 113
VW L+P+ +++K+ HQ++ FEF+WKN+AG + + S+ GG C++SH PG
Sbjct: 659 ESDNVWSLIPQ-LKRKLHLHQKKAFEFLWKNLAGSVVPAMMDPSSDKIGG--CVVSHTPG 715
Query: 114 TGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKE 173
GKT L + FL +Y+K+ P RP+++AP++ L TW +EF KW I +P + L+
Sbjct: 716 AGKTFLIIAFLASYLKIFPGKRPLVLAPKTTLYTWYKEFIKWEIPVPVHLLHGRRTYCMS 775
Query: 174 NNGAVALMDNRKRGRGKVGLIRYV-KLYSWKMGTGILGLSYRLFEKLVSGDE-------L 225
+ K + + ++ + K+ W +L + Y F L+ D +
Sbjct: 776 KEKTIQFEGIPKPSQDVMHVLDCLDKIQKWHAQPSVLVMGYTSFLTLMREDSKFAHRKYM 835
Query: 226 SGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
+ +L + PGL V DEGH PR+ + + KAL ++ T RI+LSGT FQNNF E NTL L
Sbjct: 836 AKVLRESPGLLVLDEGHNPRSTKSRLRKALMKVDTDLRILLSGTLFQNNFCEYFNTLCLA 895
Query: 286 RQEF-GEVLRTVRK---SGREISKAKH-------ASLISSIGRCANHR-DDEKLK---EL 330
R +F EVL + K + + KA H + I + + + DE+L+ L
Sbjct: 896 RPKFVHEVLVELDKKFQTNQAEQKAPHLLENRARKFFLDIIAKKIDTKVGDERLQGLNML 955
Query: 331 KEKIAPFVNVHKGTVLQ--ESLPGLRHSVVILQPDEFQKRLCKAVEGVKSF-----VELN 383
+ + F++ ++G+ + LPGL+ +++ + Q + ++ + S +EL
Sbjct: 956 RNMTSGFIDNYEGSGSGSGDVLPGLQIYTLLMNSTDVQHKSLTKLQNIMSTYHGYPLELE 1015
Query: 384 YCVSLLSVHPSLLP-----QQFFESFDVDSAKLARLKLDPEAGIKTRFLL-ILLELSTNE 437
++L ++HP L+ +FF ++ ++ +LK D + G K F+L ++ + E
Sbjct: 1016 LLITLAAIHPWLVKTTTCCAKFFNPQEL--LEIEKLKHDAKKGSKVMFVLNLVFRVVKRE 1073
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
K+L+F I P+ L +E + F W+ G+E+L + G ++ +R I+ +P Q+R++
Sbjct: 1074 KILIFCHNIAPIRLFLELFENVFRWKRGRELLTLTGDLELFERGRVIDKFEEPGGQSRVL 1133
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
LAS AC EGI+L ASRV++LD WNP +QAI+RA+R GQ++VV+VY L++ TLE
Sbjct: 1134 LASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEE 1193
Query: 558 DKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQ 601
DK RR K W S+M+F S + + +E +ED +L E+ +
Sbjct: 1194 DKYRRTTWKEWVSSMIF-SEEFVEDPSQWQAEKIEDDVLREIVE 1236
>gi|357492817|ref|XP_003616697.1| DNA repair and recombination protein RAD54-like protein [Medicago
truncatula]
gi|355518032|gb|AES99655.1| DNA repair and recombination protein RAD54-like protein [Medicago
truncatula]
Length = 1380
Score = 308 bits (789), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 199/595 (33%), Positives = 319/595 (53%), Gaps = 50/595 (8%)
Query: 49 DPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCII 108
+P + +VW L+P ++R+K+ HQ++ FEF+W+NIAG + ++ + GG C+I
Sbjct: 736 EPISEENQSVWSLIP-ELREKLHVHQKKAFEFLWRNIAGSTNPGLIEAESKKRGG--CVI 792
Query: 109 SHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPE 168
SH PG GKT L + FL +Y+KL P RP+++AP++ L TW +EF KW I IP Y ++
Sbjct: 793 SHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVYLIHGRR 852
Query: 169 LSGKENNGAVALMDNRKRGRGKVGLIRYV--KLYSWKMGTGILGLSYRLFEKLVSGDE-- 224
VA + + V + K+ W +L + Y F L+ D
Sbjct: 853 TYRVFKQNTVATLPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKF 912
Query: 225 -----LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
++ +L + PGL V DEGH PR+ + + K L +++T RI+LSGT FQNNF E
Sbjct: 913 AHRKFMAQVLRESPGLLVLDEGHNPRSTKSRLRKCLMKVQTELRILLSGTLFQNNFCEYF 972
Query: 280 NTLSLVRQEF-GEVLRTV------RKSGREISKAKHAS----------LISSIGRCANHR 322
NTL L R +F EVL+ + +K G + A+ A + +I R +
Sbjct: 973 NTLCLARPKFPHEVLKALDPKYKRKKKGVDQKGAEKAQYLIESRARKFFLDTIARKIDSN 1032
Query: 323 DDEK----LKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEG--- 375
E+ L L+ F++V++ + LPGL+ +++ + Q + + +
Sbjct: 1033 VGEERIQGLNMLRNVTNGFIDVYEAGS-SDGLPGLQIYTLLMNTTDIQHEILQKLHSDMF 1091
Query: 376 -VKSF-VELNYCVSLLSVHPSLL-----PQQFFESFDVDSAKLARLKLDPEAGIKTRFLL 428
+ +EL ++L S+HP L+ Q+F + + L + K D + G K RF+L
Sbjct: 1092 KCSGYPLELELLITLGSIHPWLVKTAVCSQKFLTKEQL--SDLDKYKFDLKIGSKVRFVL 1149
Query: 429 ILL-ELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVL 487
L+ + NEKVL+F I P+ L E F W++G+EVL + G+ ++ +R ++
Sbjct: 1150 SLIYRVVKNEKVLIFCHNIAPVRLFQEYFEKYFGWQKGREVLVLTGELELFERGKIMDKF 1209
Query: 488 NDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVY 547
+P ++I+LAS AC EGI+L ASRV++LD WNP +QAI+RA+R GQ+++V+VY
Sbjct: 1210 EEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKMVYVY 1269
Query: 548 HLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTT-ASEPLEDKILEEMAQ 601
L+ + +LE DK RR K W S+M+F S+ D + +E +ED IL EM +
Sbjct: 1270 QLLVTGSLEEDKYRRTTWKEWVSSMIF--SEAFVEDPSRWQAEKIEDDILREMVE 1322
>gi|357432832|gb|AET79246.1| chromatin remodeling 38 [Glycine max]
Length = 1245
Score = 308 bits (788), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 219/645 (33%), Positives = 346/645 (53%), Gaps = 62/645 (9%)
Query: 4 IKDIDPPF--ATSPSRRAEWREYNNVDPSFLDDLNSRDSGFDSQTGCDPF----THAQGT 57
IK I PPF R E ++ N D + S+D F + P +
Sbjct: 597 IKYITPPFIEMQRSVRHQEEKQCNGKDTK---EKASKDDDFHLLSTHAPTDEHNSMEHDN 653
Query: 58 VWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT 117
VW+L+P+ R+K+ HQ++ FEF+W+NI G ++ +L ++ S G GC+ISHAPG GKT
Sbjct: 654 VWKLIPQ-FREKLHDHQKKAFEFLWQNIGGSME-PKLMDAESKRRG-GCVISHAPGAGKT 710
Query: 118 GLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGK--ENN 175
L + FL +Y+KL P +P+I+AP+ L TW +EF KW I +P Y ++ + K E N
Sbjct: 711 FLIIAFLVSYLKLFPGKKPLILAPKGTLYTWCKEFNKWEISMPVYLIHGRGGTQKDTEQN 770
Query: 176 GAV--ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV-SGDE------LS 226
V + K + + ++ +KL W+ +L +SY F L+ G E ++
Sbjct: 771 SIVLPGFPNPNKYVKHVLDCLQKIKL--WQEKPSVLVMSYTAFLALMREGSEFAHRKYMA 828
Query: 227 GILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR 286
L + PG+ + DEGH PR+ + + K L ++KT RI+LSGT FQNNF E NTL L R
Sbjct: 829 KALREGPGILILDEGHNPRSTKSRLRKGLMKLKTDLRILLSGTLFQNNFCEYFNTLCLAR 888
Query: 287 QEF-GEVLRTV----RKSGREISKAKHASLISSIGR--------------CANHRDDEKL 327
+F EVL T+ R+ + + KA H L+ S R N R + L
Sbjct: 889 PKFISEVLDTLDPITRRKSKTVEKAGH--LLESRARKLFLDKIAKKIDSGIGNERM-QGL 945
Query: 328 KELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQK----RLCKAVEGVKSF-VEL 382
L+E FV+V++ +S PGL+ +++ + Q+ +L V+ + +EL
Sbjct: 946 NMLRETTNGFVDVYESENF-DSAPGLQIYTLLMNTTDKQREILPKLHTRVDECNGYPLEL 1004
Query: 383 NYCVSLLSVHPSLL-----PQQFFESFDVDSAKLARLKLDPEAGIKTRFLL-ILLELSTN 436
V+L S+HP L+ +FF + + +L + K D +AG K +F+L ++ +
Sbjct: 1005 ELLVTLGSIHPWLVKTTSCANKFFTADQL--KQLDKYKYDMKAGSKVKFVLSLVFRVMQR 1062
Query: 437 EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI 496
EKVL+F + P+ L++E F W++ +E+L + G+ D+ +R I+ + +++
Sbjct: 1063 EKVLIFCHNLAPVKLLIELFEMFFKWKKDREILLLSGELDLFERGKVIDKFEEHGGASKV 1122
Query: 497 MLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
+LAS AC EGI+L ASRV+ LD WNP +QAI+RA+R GQ+++V+VY L+ + TLE
Sbjct: 1123 LLASITACAEGISLTAASRVIFLDSEWNPSKTKQAIARAFRPGQEKMVYVYQLLVTGTLE 1182
Query: 557 WDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQ 601
DK +R K W S+M+F S N + + +ED IL EM +
Sbjct: 1183 EDKYKRTTWKEWVSSMIF-SEAFEENLSHSRAVNIEDDILREMVE 1226
>gi|147841648|emb|CAN75315.1| hypothetical protein VITISV_024158 [Vitis vinifera]
Length = 1904
Score = 307 bits (787), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 211/671 (31%), Positives = 340/671 (50%), Gaps = 98/671 (14%)
Query: 4 IKDIDPPFATSPSRRA------------------EWREYNNVDPSFLDDLNSRDSGFD-- 43
IKD+ PPF P+ A EWR+ N + + GF+
Sbjct: 1184 IKDVSPPFVHIPADSAHNFMLQLYFQPTGWITNREWRDEENSKRK-----QAENDGFNLF 1238
Query: 44 --SQTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTG 101
+ P + VW LVP D+RKK+ HQ++ FEF+WKNIAG + ++
Sbjct: 1239 SIPASSDTPLSEGNDNVWALVP-DLRKKLRLHQKKAFEFLWKNIAGSMVPALMEQEVKRR 1297
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
GG C+ISH+PG GKT L + FL +Y+KL P RP+++AP++ L TW +E KW + +P
Sbjct: 1298 GG--CVISHSPGAGKTFLVISFLVSYLKLFPGKRPLVLAPKTTLYTWYKEIIKWKVPVPV 1355
Query: 162 YNLN------------KPELSG---KENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGT 206
Y ++ K E S + N + ++D + K+ W
Sbjct: 1356 YQIHGCRTYRYEIYKHKVETSPGIPRPNQDVMHVLDCLE------------KIQKWHAHP 1403
Query: 207 GILGLSYRLFEKLVSGDE-------LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIK 259
IL + Y F L+ D + +L PG+ V DEGH PR+ + + KAL ++K
Sbjct: 1404 SILLMGYTSFLSLMREDSKFIHRRYMGEVLRQSPGILVLDEGHNPRSTGSRLRKALMKVK 1463
Query: 260 TRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKSGREISKAKHASLISSIGRC 318
T RI+LSGT FQNNF E NTL L R +F EVLR + + + S+ R
Sbjct: 1464 TNLRILLSGTLFQNNFSEYFNTLCLARPKFVNEVLRELDPKFKRNKNRRKRRYSSTESRA 1523
Query: 319 ANHRDDEKLKELKEKI---------------APFVNVHKGTVLQESLPGLRHSVVILQP- 362
DE K + + + F++V++G ++LPGL+ ++++
Sbjct: 1524 RKFFTDEIAKRINSNVPEEQIEGLNMLRNLTSKFIDVYEGGS-SDNLPGLQVYTLLMKST 1582
Query: 363 ---DEFQKRLCKAVEGVKSF-VELNYCVSLLSVHPSLL-----PQQFFESFDVDSAKLAR 413
+F +L K + K + +EL V+L S+HP L+ ++F ++ +L +
Sbjct: 1583 TIQQQFLSKLQKKKDEYKGYPLELELLVTLGSIHPWLITTAACADKYFSREEL--LELKK 1640
Query: 414 LKLDPEAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYM 471
K D + G K +F+L L+ + EK+L+F I P+ L ++ + W++G++VL +
Sbjct: 1641 HKDDVKKGSKVKFVLSLVNRCIIRKEKILIFCHNISPINLFVDIFDKLYKWKKGEDVLVL 1700
Query: 472 DGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531
G ++ +R ++ +P ++++LAS AC EGI+L ASRV+LLD WNP ++QA
Sbjct: 1701 QGDLELFERGRVMDQFEEPGGASKVLLASITACAEGISLTAASRVILLDTEWNPSKQKQA 1760
Query: 532 ISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTT-ASEP 590
++RA+R GQ+RVV+VY L+ ++TLE +K R K W S+M+F S+ D + +E
Sbjct: 1761 VARAFRPGQERVVYVYQLLETDTLEEEKNSRTNWKEWVSSMIF--SEAFVEDPSCWQAEK 1818
Query: 591 LEDKILEEMAQ 601
+ED +L E+ +
Sbjct: 1819 IEDDLLREIVE 1829
>gi|168009588|ref|XP_001757487.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691181|gb|EDQ77544.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 952
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 196/551 (35%), Positives = 287/551 (52%), Gaps = 103/551 (18%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMK 129
M PHQ EGF+F+ +N+ ++ D GC+++ APGTGK+ LT+ F+Q++M
Sbjct: 415 MHPHQLEGFKFLSRNL---VEED----------SGGCMLAFAPGTGKSFLTISFIQSFMI 461
Query: 130 LHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRG 189
P RP+I+AP+SML W +EFKKW ++ L+ N
Sbjct: 462 QVPNARPMIVAPKSMLRPWMQEFKKWEVE-------------------EMLVHNLYEADD 502
Query: 190 KVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDT 249
++ +++ W+ +L + Y F + E+ +L + PGL V DEGH R +DT
Sbjct: 503 QIEMLK-----RWQGTPSVLLVGYSQF--VNPSSEVGRLLTEGPGLMVMDEGHLARTEDT 555
Query: 250 CMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-------------------- 289
+ KALSR+ TRRR++LSGTPF NNF+E TL LVR F
Sbjct: 556 KILKALSRVFTRRRVLLSGTPFNNNFEEFYTTLELVRPNFMMSANAQMCPTLNTFQLIVD 615
Query: 290 -----------GEVLRTVRKSGREISK---------AKHASLISSIGRCANHRDDEKLKE 329
G +L+ SGR+ K KH S+ + L++
Sbjct: 616 NKIGPNHPVANGHLLKRPSNSGRKAFKDVIGENFESGKHGSIARA------------LQQ 663
Query: 330 LKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLL 389
L+ I PFV HKG +L +SLPG+ V+LQ Q L + + + L + +
Sbjct: 664 LRVLIKPFVAWHKGQIL-DSLPGITDLTVMLQLTAEQLELVEKNKKSEVRDSLQKRAAAI 722
Query: 390 SVHPSLLPQQFFESFDVDSAKLARLK--LDPEAGIKTRFLLILLEL--STNEKVLVFSQY 445
VHP L P + + K RLK +D +AG+K +++L L++L + EKVL+FS+Y
Sbjct: 723 YVHPILEP---VANGCKRTQKDPRLKGDVDVKAGVKLKWVLDLVQLCDAAKEKVLIFSEY 779
Query: 446 IEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKAC 504
+ L LI R NW G ++L +DG ++R+ + N DP +A+++ AS KAC
Sbjct: 780 LYSLALIENMTMQRMNWSRGSQILRLDGSLPPQEREMVQHKFNTDP--EAKMLCASIKAC 837
Query: 505 CEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQA 564
EGI+LVGASRVVLL+V WNP V RQAISRA+R+GQ+R V VY LI ++T E + A
Sbjct: 838 GEGISLVGASRVVLLEVHWNPSVPRQAISRAFRIGQQRKVVVYRLIAADTYEATNMHAVA 897
Query: 565 -RKVWWSNMVF 574
RK W S ++F
Sbjct: 898 TRKEWLSRLLF 908
>gi|15226547|ref|NP_179740.1| chromatin remodeling 34 [Arabidopsis thaliana]
gi|4567276|gb|AAD23689.1| hypothetical protein [Arabidopsis thaliana]
gi|330252085|gb|AEC07179.1| chromatin remodeling 34 [Arabidopsis thaliana]
Length = 816
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 194/608 (31%), Positives = 298/608 (49%), Gaps = 88/608 (14%)
Query: 16 SRRAEWREYNNVDPSFLDDLNSRDSGFDSQTGCDPFTHAQGTVWELVPRDVRKKMFPHQR 75
SRR RE N + S D + S + G F H W ++M PHQ
Sbjct: 223 SRRTYMREKENGETS--RDFSGIQSSHTNILGEKMFIHP----WH------DQEMRPHQT 270
Query: 76 EGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR 135
EGF F+ N+A DE GCI++HAPG+GKT L + FLQ++M + P+ R
Sbjct: 271 EGFRFLCNNLAA----DE---------PGGCILAHAPGSGKTFLLISFLQSFMAMDPQAR 317
Query: 136 PVIIAPRSMLLTWEEEFKKWGID-IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLI 194
P+++ P+ ++ +W+ EF W ++ IP + + ++ V
Sbjct: 318 PLVVLPKGIIESWKREFTLWEVEKIPLLDFYSVKAESRKQQLKV---------------- 361
Query: 195 RYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG-------ILLDLPGLFVFDEGHTPRND 247
L W IL L Y+ F +++ D ILL+ P L + DEGHT RN
Sbjct: 362 ----LGQWIKERSILFLGYQQFTRIICDDNFEAASEDCKLILLEKPTLLILDEGHTSRNK 417
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF----------------GE 291
+T M +L+R+KTRR+++L+GT FQNN +E+ N L LVR +F E
Sbjct: 418 ETYMLSSLARVKTRRKVVLTGTLFQNNVEEVFNILDLVRPKFLKRPGTREIVSRIMSKAE 477
Query: 292 VLR--TVRKSGREISKAKHASLISSIGRCANHRDDEKL-KELKEKIAPFVNVHKGTVLQE 348
+ R V +S I A++ ++ R N L K+L+E ++ HK
Sbjct: 478 IPRGKQVNQSSSSIEGTFFAAVELTLQRSTNFSAKASLIKDLREMTRNILHYHKAD-FSG 536
Query: 349 SLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLL------PQQFFE 402
LPGL V+L Q+ K + ++ F +++ +L +HP L P +
Sbjct: 537 LLPGLSEFTVMLNLSSIQRDEVKGLRKMELFKQISLGAALY-IHPKLKSFLEENPSNGEK 595
Query: 403 SFDVDSAKLARL-----KLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQ 455
F ++ + +L K++ G+K +F L LL L ST EK+LVFSQYI P+ +
Sbjct: 596 GFSDNNTTVMKLDKMLKKINVRDGVKMKFFLNLLALCESTGEKLLVFSQYIVPIKTLERL 655
Query: 456 LRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515
+ WR G+E+ + G ++R+ S+ N+ S +A++ S KAC EGI+LVGASR
Sbjct: 656 MSSMKGWRLGKEMFTITGDSSNEQREWSMERFNN-SLEAKVFFGSIKACGEGISLVGASR 714
Query: 516 VVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFP 575
V++LDV NP V +QA++RAYR GQKR V+ Y L+ +++ E + RK S M F
Sbjct: 715 VLILDVHLNPSVTQQAVARAYRPGQKRKVYAYKLVAADSPEEENYETCTRKEMMSKMWFE 774
Query: 576 SSDGGGND 583
+ G G +
Sbjct: 775 WNVGSGRE 782
>gi|297607123|ref|NP_001059497.2| Os07g0434500 [Oryza sativa Japonica Group]
gi|255677716|dbj|BAF21411.2| Os07g0434500 [Oryza sativa Japonica Group]
Length = 909
Score = 268 bits (684), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 173/523 (33%), Positives = 265/523 (50%), Gaps = 72/523 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K+M PHQ EGF F+ KN+ G GCI++HAPG+GKT + + F+Q++
Sbjct: 366 KQMRPHQLEGFSFLVKNLVGD-------------KPGGCILAHAPGSGKTFMLISFIQSF 412
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKR 186
+ +P RP+++ P+ +L TW+ EF++W + DIP Y+ + + V
Sbjct: 413 LAKYPSARPLVVLPKGILGTWKREFQRWQVEDIPLYDFYSVKADKRTEQLEV-------- 464
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGI-------LLDLPGLFVFD 239
L SW+ IL L Y+ F +++ GD I LL +P L + D
Sbjct: 465 ------------LKSWEARMSILFLGYKQFSRIICGDGDGNIAAACRDRLLMVPNLLILD 512
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF---------- 289
EGHTPRN +T + +L R++T R+++LSGT FQN+ E+ N L LVR +F
Sbjct: 513 EGHTPRNRETDVLASLKRVQTPRKVVLSGTLFQNHVSEVFNILDLVRPKFLKMESSRPIA 572
Query: 290 GEVLRTVRKSGREISKAKHASLISSIGRCANHRDD------EKLKELKEKIAPFVNVHKG 343
++ V SG K H S + DD ++ L+E ++ +KG
Sbjct: 573 RRIMSQVAISGIRSLKGVHDSAFTESVEDTLLNDDNFTRKSHVIRSLRELTKDVLHYYKG 632
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFES 403
+L E LPGL V L+ QK + +E + F + + + L +HP L + E
Sbjct: 633 DILDE-LPGLVDFSVFLKLSTKQKEIVHKIEAYEKF-KRSAVGTALYIHPCL--SEISEG 688
Query: 404 FDVDSA-KLARLKLDP-------EAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIM 453
D A L +D + G+K +F +L L S EK+L FSQYI P+ +
Sbjct: 689 DAADRATNLTDATVDSLIESIIIKDGVKAKFFFNILSLANSAGEKLLAFSQYILPMKFLE 748
Query: 454 EQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
L R W G+E+ + G R+ +++ N+ S+ A+++ S KAC EGI+LVGA
Sbjct: 749 RLLVKRLGWHVGKEIFMISGDTSADDREVAMDQFNN-SADAKVLFGSIKACGEGISLVGA 807
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
SRV++LDV NP V RQAI RA+R GQ++ V VY L+ +++ E
Sbjct: 808 SRVIILDVHLNPSVTRQAIGRAFRPGQQKKVFVYRLVAADSPE 850
>gi|34394721|dbj|BAC84084.1| putative SNF2 domain/helicase domain-containing protein [Oryza
sativa Japonica Group]
Length = 872
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 173/523 (33%), Positives = 265/523 (50%), Gaps = 72/523 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K+M PHQ EGF F+ KN+ G GCI++HAPG+GKT + + F+Q++
Sbjct: 329 KQMRPHQLEGFSFLVKNLVGD-------------KPGGCILAHAPGSGKTFMLISFIQSF 375
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKR 186
+ +P RP+++ P+ +L TW+ EF++W + DIP Y+ + + V
Sbjct: 376 LAKYPSARPLVVLPKGILGTWKREFQRWQVEDIPLYDFYSVKADKRTEQLEV-------- 427
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGI-------LLDLPGLFVFD 239
L SW+ IL L Y+ F +++ GD I LL +P L + D
Sbjct: 428 ------------LKSWEARMSILFLGYKQFSRIICGDGDGNIAAACRDRLLMVPNLLILD 475
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF---------- 289
EGHTPRN +T + +L R++T R+++LSGT FQN+ E+ N L LVR +F
Sbjct: 476 EGHTPRNRETDVLASLKRVQTPRKVVLSGTLFQNHVSEVFNILDLVRPKFLKMESSRPIA 535
Query: 290 GEVLRTVRKSGREISKAKHASLISSIGRCANHRDD------EKLKELKEKIAPFVNVHKG 343
++ V SG K H S + DD ++ L+E ++ +KG
Sbjct: 536 RRIMSQVAISGIRSLKGVHDSAFTESVEDTLLNDDNFTRKSHVIRSLRELTKDVLHYYKG 595
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFES 403
+L E LPGL V L+ QK + +E + F + + + L +HP L + E
Sbjct: 596 DILDE-LPGLVDFSVFLKLSTKQKEIVHKIEAYEKF-KRSAVGTALYIHPCL--SEISEG 651
Query: 404 FDVDSA-KLARLKLDP-------EAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIM 453
D A L +D + G+K +F +L L S EK+L FSQYI P+ +
Sbjct: 652 DAADRATNLTDATVDSLIESIIIKDGVKAKFFFNILSLANSAGEKLLAFSQYILPMKFLE 711
Query: 454 EQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
L R W G+E+ + G R+ +++ N+ S+ A+++ S KAC EGI+LVGA
Sbjct: 712 RLLVKRLGWHVGKEIFMISGDTSADDREVAMDQFNN-SADAKVLFGSIKACGEGISLVGA 770
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
SRV++LDV NP V RQAI RA+R GQ++ V VY L+ +++ E
Sbjct: 771 SRVIILDVHLNPSVTRQAIGRAFRPGQQKKVFVYRLVAADSPE 813
>gi|222635335|gb|EEE65467.1| hypothetical protein OsJ_20857 [Oryza sativa Japonica Group]
Length = 949
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 173/523 (33%), Positives = 265/523 (50%), Gaps = 72/523 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K+M PHQ EGF F+ KN+ G GCI++HAPG+GKT + + F+Q++
Sbjct: 403 KQMRPHQLEGFSFLVKNLVGD-------------KPGGCILAHAPGSGKTFMLISFIQSF 449
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKR 186
+ +P RP+++ P+ +L TW+ EF++W + DIP Y+ + + V
Sbjct: 450 LAKYPSARPLVVLPKGILGTWKREFQRWQVEDIPLYDFYSVKADKRVEQLEV-------- 501
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGI-------LLDLPGLFVFD 239
L SW+ IL L Y+ F +++ GD I LL +P L + D
Sbjct: 502 ------------LKSWEAQMSILFLGYKQFSRIICGDGDGNIAAACRDRLLMVPNLLILD 549
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF---------- 289
EGHTPRN +T + +L R++T R+++LSGT FQN+ E+ N L LVR +F
Sbjct: 550 EGHTPRNRETDVLASLKRVQTPRKVVLSGTLFQNHVSEVFNILDLVRPKFLKMESSRPIA 609
Query: 290 GEVLRTVRKSGREISKAKHASLISSIGRCANHRDD------EKLKELKEKIAPFVNVHKG 343
++ V SG K H S + DD ++ L+E ++ +KG
Sbjct: 610 RRIMSQVAISGIRSLKGVHDSAFTESVEDTLLNDDNFTRKAHVIRSLRELTKDVLHYYKG 669
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFES 403
+L E LPGL V L+ QK + +E + F + + + L +HP L + E
Sbjct: 670 DILDE-LPGLVDFSVFLKLSTKQKEIVHKIEAYEKF-KRSAVGTALYIHPCL--SEISEG 725
Query: 404 FDVDSA-KLARLKLDP-------EAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIM 453
D A L +D + G+K +F +L L S EK+L FSQYI P+ +
Sbjct: 726 DAADRASNLTDATVDSLIESIIIKDGVKAKFFFNILSLANSAGEKLLAFSQYILPMKFLE 785
Query: 454 EQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
L R W G+E+ + G R+ +++ N+ S+ A+++ S KAC EGI+LVGA
Sbjct: 786 RLLVKRLGWHVGKEIFMISGDTSADDREVAMDQFNN-SADAKVLFGSIKACGEGISLVGA 844
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
SRV++LDV NP V RQAI RA+R GQ++ V VY L+ +++ E
Sbjct: 845 SRVIILDVHLNPSVTRQAIGRAFRPGQQKKVFVYRLVAADSPE 887
>gi|222636933|gb|EEE67065.1| hypothetical protein OsJ_24029 [Oryza sativa Japonica Group]
Length = 969
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 173/523 (33%), Positives = 265/523 (50%), Gaps = 72/523 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K+M PHQ EGF F+ KN+ G GCI++HAPG+GKT + + F+Q++
Sbjct: 423 KQMRPHQLEGFSFLVKNLVGD-------------KPGGCILAHAPGSGKTFMLISFIQSF 469
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKR 186
+ +P RP+++ P+ +L TW+ EF++W + DIP Y+ + + V
Sbjct: 470 LAKYPSARPLVVLPKGILGTWKREFQRWQVEDIPLYDFYSVKADKRTEQLEV-------- 521
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGI-------LLDLPGLFVFD 239
L SW+ IL L Y+ F +++ GD I LL +P L + D
Sbjct: 522 ------------LKSWEARMSILFLGYKQFSRIICGDGDGNIAAACRDRLLMVPNLLILD 569
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF---------- 289
EGHTPRN +T + +L R++T R+++LSGT FQN+ E+ N L LVR +F
Sbjct: 570 EGHTPRNRETDVLASLKRVQTPRKVVLSGTLFQNHVSEVFNILDLVRPKFLKMESSRPIA 629
Query: 290 GEVLRTVRKSGREISKAKHASLISSIGRCANHRDD------EKLKELKEKIAPFVNVHKG 343
++ V SG K H S + DD ++ L+E ++ +KG
Sbjct: 630 RRIMSQVAISGIRSLKGVHDSAFTESVEDTLLNDDNFTRKSHVIRSLRELTKDVLHYYKG 689
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFES 403
+L E LPGL V L+ QK + +E + F + + + L +HP L + E
Sbjct: 690 DILDE-LPGLVDFSVFLKLSTKQKEIVHKIEAYEKF-KRSAVGTALYIHPCL--SEISEG 745
Query: 404 FDVDSA-KLARLKLDP-------EAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIM 453
D A L +D + G+K +F +L L S EK+L FSQYI P+ +
Sbjct: 746 DAADRATNLTDATVDSLIESIIIKDGVKAKFFFNILSLANSAGEKLLAFSQYILPMKFLE 805
Query: 454 EQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
L R W G+E+ + G R+ +++ N+ S+ A+++ S KAC EGI+LVGA
Sbjct: 806 RLLVKRLGWHVGKEIFMISGDTSADDREVAMDQFNN-SADAKVLFGSIKACGEGISLVGA 864
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
SRV++LDV NP V RQAI RA+R GQ++ V VY L+ +++ E
Sbjct: 865 SRVIILDVHLNPSVTRQAIGRAFRPGQQKKVFVYRLVAADSPE 907
>gi|218197913|gb|EEC80340.1| hypothetical protein OsI_22411 [Oryza sativa Indica Group]
Length = 949
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 173/523 (33%), Positives = 265/523 (50%), Gaps = 72/523 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K+M PHQ EGF F+ KN+ G GCI++HAPG+GKT + + F+Q++
Sbjct: 403 KQMRPHQLEGFSFLVKNLVGD-------------KPGGCILAHAPGSGKTFMLISFIQSF 449
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKR 186
+ +P RP+++ P+ +L TW+ EF++W + DIP Y+ + + V
Sbjct: 450 LAKYPSARPLVVLPKGILGTWKREFQRWQVEDIPLYDFYSVKADKRVEQLEV-------- 501
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGI-------LLDLPGLFVFD 239
L SW+ IL L Y+ F +++ GD I LL +P L + D
Sbjct: 502 ------------LKSWEAQMSILFLGYKQFSRIICGDGDGNIAAACRDRLLMVPNLLILD 549
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF---------- 289
EGHTPRN +T + +L R++T R+++LSGT FQN+ E+ N L LVR +F
Sbjct: 550 EGHTPRNRETDVLASLKRVQTPRKVVLSGTLFQNHVSEVFNILDLVRPKFLKMESSRPIA 609
Query: 290 GEVLRTVRKSGREISKAKHASLISSIGRCANHRDD------EKLKELKEKIAPFVNVHKG 343
++ V SG K H S + DD ++ L+E ++ +KG
Sbjct: 610 RRIMSQVAISGIRSLKGVHDSAFTESVEDTLLNDDNFTRKAHVIRSLRELTKDVLHYYKG 669
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFES 403
+L E LPGL V L+ QK + +E + F + + + L +HP L + E
Sbjct: 670 DILDE-LPGLVDFSVFLKLSTKQKEIVHKIEAYEKF-KRSAVGTALYIHPCL--SEISEG 725
Query: 404 FDVDSA-KLARLKLDP-------EAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIM 453
D A L +D + G+K +F +L L S EK+L FSQYI P+ +
Sbjct: 726 DAADRASNLTDATVDSLIESIIIKDGVKAKFFFNILSLANSAGEKLLAFSQYILPMKFLE 785
Query: 454 EQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
L R W G+E+ + G R+ +++ N+ S+ A+++ S KAC EGI+LVGA
Sbjct: 786 RLLVKRLGWHVGKEIFMISGDTSADDREVAMDQFNN-SADAKVLFGSIKACGEGISLVGA 844
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
SRV++LDV NP V RQAI RA+R GQ++ V VY L+ +++ E
Sbjct: 845 SRVIILDVHLNPSVTRQAIGRAFRPGQQKKVFVYRLVAADSPE 887
>gi|115467422|ref|NP_001057310.1| Os06g0255700 [Oryza sativa Japonica Group]
gi|52076415|dbj|BAD45245.1| putative DNA repair protein [Oryza sativa Japonica Group]
gi|52077256|dbj|BAD46298.1| putative DNA repair protein [Oryza sativa Japonica Group]
gi|113595350|dbj|BAF19224.1| Os06g0255700 [Oryza sativa Japonica Group]
Length = 946
Score = 267 bits (683), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 173/523 (33%), Positives = 265/523 (50%), Gaps = 72/523 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K+M PHQ EGF F+ KN+ G GCI++HAPG+GKT + + F+Q++
Sbjct: 403 KQMRPHQLEGFSFLVKNLVGD-------------KPGGCILAHAPGSGKTFMLISFIQSF 449
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKR 186
+ +P RP+++ P+ +L TW+ EF++W + DIP Y+ + + V
Sbjct: 450 LAKYPSARPLVVLPKGILGTWKREFQRWQVEDIPLYDFYSVKADKRVEQLEV-------- 501
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGI-------LLDLPGLFVFD 239
L SW+ IL L Y+ F +++ GD I LL +P L + D
Sbjct: 502 ------------LKSWEAQMSILFLGYKQFSRIICGDGDGNIAAACRDRLLMVPNLLILD 549
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF---------- 289
EGHTPRN +T + +L R++T R+++LSGT FQN+ E+ N L LVR +F
Sbjct: 550 EGHTPRNRETDVLASLKRVQTPRKVVLSGTLFQNHVSEVFNILDLVRPKFLKMESSRPIA 609
Query: 290 GEVLRTVRKSGREISKAKHASLISSIGRCANHRDD------EKLKELKEKIAPFVNVHKG 343
++ V SG K H S + DD ++ L+E ++ +KG
Sbjct: 610 RRIMSQVAISGIRSLKGVHDSAFTESVEDTLLNDDNFTRKAHVIRSLRELTKDVLHYYKG 669
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFES 403
+L E LPGL V L+ QK + +E + F + + + L +HP L + E
Sbjct: 670 DILDE-LPGLVDFSVFLKLSTKQKEIVHKIEAYEKF-KRSAVGTALYIHPCL--SEISEG 725
Query: 404 FDVDSA-KLARLKLDP-------EAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIM 453
D A L +D + G+K +F +L L S EK+L FSQYI P+ +
Sbjct: 726 DAADRASNLTDATVDSLIESIIIKDGVKAKFFFNILSLANSAGEKLLAFSQYILPMKFLE 785
Query: 454 EQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
L R W G+E+ + G R+ +++ N+ S+ A+++ S KAC EGI+LVGA
Sbjct: 786 RLLVKRLGWHVGKEIFMISGDTSADDREVAMDQFNN-SADAKVLFGSIKACGEGISLVGA 844
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
SRV++LDV NP V RQAI RA+R GQ++ V VY L+ +++ E
Sbjct: 845 SRVIILDVHLNPSVTRQAIGRAFRPGQQKKVFVYRLVAADSPE 887
>gi|225434275|ref|XP_002275596.1| PREDICTED: DNA repair and recombination protein RAD54-like [Vitis
vinifera]
Length = 944
Score = 266 bits (680), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 180/558 (32%), Positives = 283/558 (50%), Gaps = 77/558 (13%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM 128
+M PHQ EGF F+ N+ GCI++HAPG+GKT + + F+Q+++
Sbjct: 397 QMKPHQVEGFNFLVSNLVAD-------------NPGGCILAHAPGSGKTFMIISFMQSFL 443
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKRG 187
+P+ RP+++ P+ +L TW++EF W + DIP Y+ + + V
Sbjct: 444 AKYPQARPLVVLPKGILATWKKEFLTWQVEDIPLYDFYSVKADSRPQQLEV--------- 494
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG-------ILLDLPGLFVFDE 240
L W IL L Y+ F +V GD S ILL P + + DE
Sbjct: 495 -----------LKQWVAEKSILFLGYKQFSSIVCGDGASKAAMACQEILLKAPQILILDE 543
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF----------G 290
GHTPRN++T + +L++++T R+++LSGT +QN+ +E+ N L+LVR +F
Sbjct: 544 GHTPRNENTDVLYSLAKVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKLESSRAIVK 603
Query: 291 EVLRTVRKSG-REISKAKHASLISSIGRCANHRDDE------KLKELKEKIAPFVNVHKG 343
++ V G R+ K+ A + +DD +++L+E + ++ +KG
Sbjct: 604 RIMSKVDIMGVRKQLKSNAADAFYDLVENTLQKDDNFRRKITVIQDLREMTSKVLHYYKG 663
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFES 403
L E LPGL V+L QK+ + + + N S + +HP L + F E
Sbjct: 664 DFLDE-LPGLVDFTVLLNLSARQKKEVGNLNKFERKFKKNSVGSAVYLHPQL--KYFAEK 720
Query: 404 FDVDSAKLARL-----------KLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLT 450
+ +K + +LD G+K +F L +L L S EK+LVFSQY+ PL
Sbjct: 721 LAANESKTDEMTYQKKMDEILEQLDVREGVKVKFFLNVLALCQSAGEKLLVFSQYLLPLR 780
Query: 451 LIMEQLRHRFN-WREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509
+E+L + N W G+E+ + G+ ++R+ S+ N S AR+ S KAC EGI+
Sbjct: 781 F-LEKLTMKVNGWSSGKEIFVISGESSSEQREWSMERFN-TSPDARVFFGSIKACGEGIS 838
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
LVGASRV++LDV NP V RQAI RA+R GQK+ VHVY L+ +++ E + +K
Sbjct: 839 LVGASRVLILDVHLNPSVTRQAIGRAFRPGQKKKVHVYKLVAADSPEEEDHNTCFKKELI 898
Query: 570 SNMVFPSSDGGGNDQTTA 587
S M F ++ GN + A
Sbjct: 899 SKMWFEWNEYCGNHEFEA 916
>gi|297824995|ref|XP_002880380.1| hypothetical protein ARALYDRAFT_481010 [Arabidopsis lyrata subsp.
lyrata]
gi|297326219|gb|EFH56639.1| hypothetical protein ARALYDRAFT_481010 [Arabidopsis lyrata subsp.
lyrata]
Length = 800
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 183/556 (32%), Positives = 287/556 (51%), Gaps = 81/556 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
++M PHQ EGF F+ N+A DE GCI++HAPG+GKT L + FLQ++
Sbjct: 250 QEMRPHQTEGFRFLCNNLAA----DE---------PGGCILAHAPGSGKTFLLISFLQSF 296
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGID-IPFYNLNKPELSGKENNGAVALMDNRKR 186
M + P+ RP+I+ P+ ++ +W+ EF W ++ IP + + ++ V
Sbjct: 297 MAMDPQARPLIVLPKGIIESWKREFTLWEVEKIPLLDFYSVKAESRKQQLKV-------- 348
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD--------ELSGILLDLPGLFVF 238
L W IL L Y+ F +++ D + ILL+ P L +
Sbjct: 349 ------------LGQWLKERSILFLGYQQFTRIICDDKNFEAASEDCKLILLEKPTLLIL 396
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGE------- 291
DEGHT RN +T M +L+R+KT R+++L+GT FQNN +E+ N L+LVR +F +
Sbjct: 397 DEGHTSRNKETNMLISLARVKTPRKVVLTGTLFQNNVEEVFNILNLVRPKFLKRPGTREI 456
Query: 292 VLRTVRKS----GREISK---------AKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
V R + K+ G+++++ A +L SI A +K+L+E +
Sbjct: 457 VSRIMSKAEIPRGKQVNQSSIEGTFFAAVELTLQKSIDFSAKA---SLIKDLREMTRNIL 513
Query: 339 NVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLL-- 396
+ HK LPGL V+L Q+ K + ++ F +++ +L +HP L
Sbjct: 514 HYHKAD-FSGLLPGLSEFTVMLNLSSIQRDEIKGLRKMELFKQISLGAALY-IHPKLKSF 571
Query: 397 ----PQQFFESFDVDSAKLARL-----KLDPEAGIKTRFLLILLEL--STNEKVLVFSQY 445
P + F ++A + +L K++ G+K +F L LL L ST EK+LVFSQY
Sbjct: 572 LEENPSNGEKGFADNNATVMKLDKMLKKINVRDGVKMKFFLNLLALCESTGEKLLVFSQY 631
Query: 446 IEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACC 505
I P+ + + WR G+E+ + G ++R+ S+ N+ S +A++ S KAC
Sbjct: 632 IVPIKTLERLMSSMKGWRLGKEMFTITGDSSNEQREWSMERFNN-SPEAKVFFGSIKACG 690
Query: 506 EGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQAR 565
EGI+LVGASRV++LDV NP V +QA++RAYR GQKR V+ Y L+ +E+ E + R
Sbjct: 691 EGISLVGASRVLILDVHLNPSVTQQAVARAYRPGQKRKVYAYKLVAAESPEEENYETCTR 750
Query: 566 KVWWSNMVFPSSDGGG 581
K S M F + G G
Sbjct: 751 KEMMSKMWFEWNVGSG 766
>gi|218199507|gb|EEC81934.1| hypothetical protein OsI_25800 [Oryza sativa Indica Group]
Length = 969
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 172/523 (32%), Positives = 264/523 (50%), Gaps = 72/523 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K+M PHQ EGF F+ KN+ G GCI++HAPG+GKT + + F+Q++
Sbjct: 423 KQMRPHQLEGFSFLVKNLVGD-------------KPGGCILAHAPGSGKTFMLISFIQSF 469
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKR 186
+ +P RP+++ P+ +L TW+ EF++W + DI Y+ + + V
Sbjct: 470 LAKYPSARPLVVLPKGILGTWKREFQRWQVEDILLYDFYSVKADKRTEQLEV-------- 521
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGI-------LLDLPGLFVFD 239
L SW+ IL L Y+ F +++ GD I LL +P L + D
Sbjct: 522 ------------LKSWEARMSILFLGYKQFSRIICGDGDGNIAAACRDRLLMVPNLLILD 569
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF---------- 289
EGHTPRN +T + +L R++T R+++LSGT FQN+ E+ N L LVR +F
Sbjct: 570 EGHTPRNRETDVLASLKRVQTPRKVVLSGTLFQNHVSEVFNILDLVRPKFLKMESSRPIA 629
Query: 290 GEVLRTVRKSGREISKAKHASLISSIGRCANHRDD------EKLKELKEKIAPFVNVHKG 343
++ V SG K H S + DD ++ L+E ++ +KG
Sbjct: 630 RRIMSQVAISGIRSLKGVHDSAFTESVEDTLLNDDNFTRKAHVIRSLRELTKDVLHYYKG 689
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFES 403
+L E LPGL V L+ QK + +E + F + + + L +HP L + E
Sbjct: 690 DILDE-LPGLVDFSVFLKLSTKQKEIVHKIEAYEKF-KRSAVGTALYIHPCL--SEISEG 745
Query: 404 FDVDSA-KLARLKLDP-------EAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIM 453
D A L +D + G+K +F +L L S EK+L FSQYI P+ +
Sbjct: 746 DAADRATNLTDATVDSLIESIIIKDGVKAKFFFNILSLANSAGEKLLAFSQYILPMKFLE 805
Query: 454 EQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
L R W G+E+ + G R+ +++ N+ S+ A+++ S KAC EGI+LVGA
Sbjct: 806 RLLVKRLGWHVGKEIFMISGDTSADDREVAMDQFNN-SADAKVLFGSIKACGEGISLVGA 864
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
SRV++LDV NP V RQAI RA+R GQ++ V VY L+ +++ E
Sbjct: 865 SRVIILDVHLNPSVTRQAIGRAFRPGQQKKVFVYRLVAADSPE 907
>gi|302773700|ref|XP_002970267.1| hypothetical protein SELMODRAFT_441121 [Selaginella moellendorffii]
gi|300161783|gb|EFJ28397.1| hypothetical protein SELMODRAFT_441121 [Selaginella moellendorffii]
Length = 1029
Score = 263 bits (671), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 186/549 (33%), Positives = 282/549 (51%), Gaps = 65/549 (11%)
Query: 65 DVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFL 124
D R+ + HQR F+ +NI +DE GCI++HAPGTGKT T+ F
Sbjct: 510 DTRRSLHAHQRRAVRFMKRNI-----VDE---------EGGCILAHAPGTGKTFATVYFY 555
Query: 125 QAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNR 184
Y ++ CR +++ P+ + W EEF+K ++ PF+ + +R
Sbjct: 556 LKYKEIMAGCRLLVLCPKMVQNVWREEFRKSQMETPFF------------------LSSR 597
Query: 185 KRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTP 244
K R +V L W G+L + + LF K+ E +L+ P L + DEGHT
Sbjct: 598 KSRRLEV-------LSRWHRQRGVLVMGFTLFMKMSLKKEYRSYMLESPELVILDEGHTL 650
Query: 245 RNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREIS 304
R++ T + A+ +KT+ RI+LSGT FQN F+EL N + L R F + L+ ++ R
Sbjct: 651 RSNGTLLRNAVMNMKTKLRILLSGTLFQNTFEELFNLIFLARPNFIQQLQMEDRARR--- 707
Query: 305 KAKHASLISSIGRCAN----HRDDEKLK-ELKEKIAPFVNVHKGTVLQESLPGLRHSVVI 359
I IGR + HR+ + + +L + F + + G +L E LPGLR +
Sbjct: 708 -----WFIKEIGRKFDDGHGHREMQAAQMKLVKMTQGFTDHYTGAILTEVLPGLRDYEIT 762
Query: 360 LQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPE 419
E Q +L AV G +E++ + +S+HP L + E+ D + +A +D
Sbjct: 763 TAMTELQHKLVAAVAGT---LEMDITRTRISIHPLL---RSAEAAGGDFSAVAAEVVDVR 816
Query: 420 AGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDV 477
A +KT F++ L+EL NEKVLVF +++ P L++ L W +EV+++ G
Sbjct: 817 ASMKTAFVMKLIELCQCANEKVLVFGEFLAPFHLLLRMLELERGWSRDKEVVFLHGALVT 876
Query: 478 KKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYR 537
++R ++ N S+AR+ LAS +AC EGI LVGASRVVLL VWNP QAISRA+R
Sbjct: 877 EERHELMDRFNAEGSEARVCLASIRACAEGITLVGASRVVLLHPVWNPAQTNQAISRAFR 936
Query: 538 LGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGG-NDQTTASEPLEDKIL 596
LGQKR V VY L+T +E K R K + S +F ++ Q AS E+
Sbjct: 937 LGQKRKVFVYRLVTE--VETVKNSRTKWKDFCSEAIFETAGSAAPRPQEPASLSAEEIFS 994
Query: 597 EE--MAQLY 603
E+ +AQ++
Sbjct: 995 EDKLLAQIH 1003
>gi|168000545|ref|XP_001752976.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
patens]
gi|162695675|gb|EDQ82017.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
patens]
Length = 653
Score = 262 bits (670), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 184/542 (33%), Positives = 280/542 (51%), Gaps = 85/542 (15%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMK 129
M PHQ EGF+F+ +N+ ++ D GC+++ APGTGK+ L + F+Q++M
Sbjct: 116 MHPHQLEGFKFLSRNL---VEED----------SGGCMLAFAPGTGKSFLIISFIQSFMV 162
Query: 130 LHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRG 189
P RP+I+AP+SML W +EFKKW ++ L+ N
Sbjct: 163 QVPNARPMIVAPKSMLRPWMQEFKKWEVE-------------------EMLVLNLYEADD 203
Query: 190 KVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDT 249
V +++ W +L + Y F + E+ L + PG+ V DEGH R ++T
Sbjct: 204 HVKMLK-----QWMATPSVLLVGYSQF--INPSGEVGKYLTEGPGMIVMDEGHLARTEET 256
Query: 250 CMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-------------------- 289
+ K+L+R+ TRRR++LSGTPF NNF+E TL LVR F
Sbjct: 257 KILKSLTRVHTRRRVLLSGTPFNNNFEEFYTTLELVRPNFMSRANAQMFPTLNTFQQIVD 316
Query: 290 -----------GEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
G++L+ +GR+ + S G+ +N + L++L+ I PFV
Sbjct: 317 TKMNSKQPVLDGQLLKRSTNAGRKAFQDVIGEKFES-GKYSNIA--KALQQLRVLIEPFV 373
Query: 339 NVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQ 398
HKG +L SLPG+ ++L+ Q L + + + L + + VHP L P
Sbjct: 374 AWHKGQILN-SLPGITDLTIMLELTAQQLELVRKNKQNEVRDSLQKRAAAIYVHPILEP- 431
Query: 399 QFFESFDVDSAKLARLK--LDPEAGIKTRFLLILLELSTN--EKVLVFSQYIEPLTLIME 454
S + RLK +D +AG K R++L +++ + EK+L+FS+Y+ L LI
Sbjct: 432 --VADGVKRSQRDPRLKGDVDVKAGAKLRWVLDMVQQCNDAKEKLLIFSEYLYSLALIEN 489
Query: 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGINLVGA 513
R W +G ++L +DG ++R+ + N DP + R++ AS KAC EGI+LVGA
Sbjct: 490 MAVQRMKWSKGLQILRLDGSLPPQERERVQHKFNTDP--EVRVLCASIKACGEGISLVGA 547
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQA-RKVWWSNM 572
SRV+LL+V+WNP V RQAISRA+R+GQ+R V VY LI + T E + A RK W S +
Sbjct: 548 SRVILLEVLWNPSVPRQAISRAFRIGQQRKVVVYRLIAAGTYEEMNMHAAATRKEWLSRL 607
Query: 573 VF 574
+F
Sbjct: 608 LF 609
>gi|326526795|dbj|BAK00786.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 949
Score = 262 bits (670), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 169/521 (32%), Positives = 272/521 (52%), Gaps = 68/521 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K+M HQ GF F+ KN+ + GCI++HAPG+GKT + + F+Q++
Sbjct: 405 KQMRAHQLAGFHFLVKNLV-------------SDKPGGCILAHAPGSGKTFMLISFIQSF 451
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKR 186
+ +P RP++I P+ +L TW+ EF++W + DIP Y+ + + +
Sbjct: 452 LARYPSSRPLVILPKGILGTWKREFQRWQVEDIPLYDFYSVKAEKRAEQLEI-------- 503
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD-------ELSGILLDLPGLFVFD 239
L SW+ IL L Y+ F ++V D +LL +P L + D
Sbjct: 504 ------------LKSWQAKMSILFLGYKQFSQIVCSDGGGNVAAACRDMLLKVPSLLIMD 551
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF---------- 289
EGHTPRN +T + ++LSR++T R+++LSGT FQN+ E+ N L+LVR +F
Sbjct: 552 EGHTPRNRETDVLESLSRVQTPRKVVLSGTLFQNHVSEVFNILNLVRPKFLKSDSSRPIV 611
Query: 290 GEVLRTVRKSGREISK-AKHASLISSIGRCANHRDD-----EKLKELKEKIAPFVNVHKG 343
++ V SG ISK + + S+ H D+ ++ L+E ++ +KG
Sbjct: 612 KRIMSQVAISGGRISKGSADNAFTESVEETLLHDDNFTRKAHVIRSLRELTKDVLHYYKG 671
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFES 403
+L E LPGL V L+ QK + +E + F + + + + +HP L F++
Sbjct: 672 DILDE-LPGLVDISVFLKLSPKQKEIVHKLESYEKF-KRSAIGTAVYMHPCLSGMSEFDA 729
Query: 404 FD----VDSAKLARL--KLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQ 455
D + +A + L ++ G+K RF +L L S EKVL F QYI P+ +
Sbjct: 730 ADRAINLTNASIDSLVESINVTDGVKARFFTNILALANSAGEKVLAFGQYILPMKFLERL 789
Query: 456 LRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515
L W G+E+ ++G ++R+ + + N+ S+ A+++ S +AC EGI+LVGASR
Sbjct: 790 LVKTRGWNVGKEIFVINGDTSQEERELATDQFNN-SADAKVLFGSIRACGEGISLVGASR 848
Query: 516 VVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
VV+LDV NP V RQAI RA+R GQ++ V VY L+ +++ E
Sbjct: 849 VVILDVHLNPSVTRQAIGRAFRPGQQKKVFVYRLVAADSQE 889
>gi|357128891|ref|XP_003566103.1| PREDICTED: transcriptional regulator ATRX homolog [Brachypodium
distachyon]
Length = 735
Score = 261 bits (668), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 175/542 (32%), Positives = 287/542 (52%), Gaps = 74/542 (13%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ EGFEF+ KN+ S GG CI++HAPG+GKT + + F+Q+++
Sbjct: 195 PHQLEGFEFLVKNLV----------SDKPGG---CILAHAPGSGKTFMIICFIQSFLAKD 241
Query: 132 PRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKRGRGK 190
P RP+++ P+ ++ TW+ EF++W + D+P Y+ + +E+ +
Sbjct: 242 PSARPLVVLPKGIVGTWKREFQRWQVEDMPVYDFYSVNATKREDQLKI------------ 289
Query: 191 VGLIRYVKLYSWKMGTGILGLSYRLFEKLVS--GDELSG-----ILLDLPGLFVFDEGHT 243
L SW+ IL + Y F K+V GDE++ +LL +P L + DEGHT
Sbjct: 290 --------LNSWQSNMSILFVGYEQFSKIVCCKGDEITAPVCRDMLLMVPNLLIMDEGHT 341
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF----------GEVL 293
PRN++T + ++LS+++T R++++SGT FQN+ +E+ + L+LVR +F ++
Sbjct: 342 PRNNETNLQESLSQVRTPRKVVMSGTLFQNHVKEVVSILNLVRPKFLNTGSSRLIARRIM 401
Query: 294 RTVRKSGREISKAKHA---SLISSIGRCANH-----RDDEKLKELKEKIAPFVNVHKGTV 345
V SGR I K + S+ H R ++ LKE ++ +KG +
Sbjct: 402 SQVAISGRRIPKDPRKFDKAFAESVEETLLHDENFTRKKHVIRSLKELTEDVIHYYKGDI 461
Query: 346 LQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFD 405
L E LPGL V L+ Q L + +EG + +++ + + L +HP L + E+
Sbjct: 462 LHE-LPGLIDFSVFLKLSPRQNELVQKLEGYE-YLKRSAVGTALYMHPCL--SEMSEAGA 517
Query: 406 VDSAKL---ARLKLDPEA-----GIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQ 455
D A + A + E+ G+K +F + +L+L S EK+L FSQ+I P+ +
Sbjct: 518 ADKANILTDATVDTLFESVHVGDGVKAKFFINILKLASSAGEKLLAFSQHILPMKFLERL 577
Query: 456 LRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515
L F W G E+ + G R+ +++ N+ S+ ++++ S KAC EGI+LVGASR
Sbjct: 578 LVKMFGWHVGMEIFVITGDTSAVDRELAMDKFNN-SADSKVLFGSIKACGEGISLVGASR 636
Query: 516 VVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFP 575
VV+LDV NP V RQAI A+R GQ++ V VY L+ +E+ E + +K S ++F
Sbjct: 637 VVILDVHLNPSVTRQAIGCAFRPGQQKKVIVYRLVAAESPEENLHETALKKEGISKLLFE 696
Query: 576 SS 577
S+
Sbjct: 697 SN 698
>gi|357140121|ref|XP_003571619.1| PREDICTED: helicase ARIP4-like [Brachypodium distachyon]
Length = 984
Score = 261 bits (667), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 168/522 (32%), Positives = 278/522 (53%), Gaps = 68/522 (13%)
Query: 67 RKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA 126
+K++ HQ EGF F+ KN+ + GCI++HAPG+GKT + + F+Q+
Sbjct: 439 KKQIRSHQLEGFHFLVKNLV-------------SDKPGGCILAHAPGSGKTFMVISFIQS 485
Query: 127 YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRK 185
++ +P RP++I P+ +L TW++EF++W + DIP Y+ + +E+ +
Sbjct: 486 FLAKYPSGRPLVILPKGILGTWKKEFQQWQVEDIPLYDFYSVKAEKREDQLKI------- 538
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD-------ELSGILLDLPGLFVF 238
L SW+ IL L Y+ F ++ GD +LL +P L +
Sbjct: 539 -------------LNSWQSKMSILFLGYKQFSTIICGDGGGTVAAACRDMLLMVPNLLIL 585
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF--------- 289
DEGHTPRN T + ++LSR++T R+++LSGT FQN+ E+ N L+LVR +F
Sbjct: 586 DEGHTPRNTATNVLESLSRVQTPRKVVLSGTLFQNHVGEVFNILNLVRPKFLRMESSRPI 645
Query: 290 -GEVLRTVRKSGREISKAKHASLIS-SIGRCANH-----RDDEKLKELKEKIAPFVNVHK 342
++ V SG +SK ++ + S+ H R ++ L+E ++ +K
Sbjct: 646 VRRIMSQVAISGTRVSKGVPDNVFTESVEETLLHDENFTRKAHIIRSLRELTNDVLHYYK 705
Query: 343 GTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFE 402
G +L E LPGL V L+ QK + +E + F + + + L +HP L +
Sbjct: 706 GDILDE-LPGLVDFSVFLKLSPRQKEIVHKLEAYEKF-KRSAVGTALYMHPCLSEMSEGD 763
Query: 403 SFD-----VDSAKLARLK-LDPEAGIKTRFLLILLELST--NEKVLVFSQYIEPLTLIME 454
+ D D+A + ++ ++ G+K F + +L L++ EK+L FSQYI P+ +
Sbjct: 764 ATDRANNLTDAAVDSMVQSINVRDGVKASFFINILRLASCAGEKLLAFSQYILPMKFLER 823
Query: 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGAS 514
L + W G+E+ + G + R+ +++ N+ S+ A+++ S KAC EGI+LVGAS
Sbjct: 824 LLVKTWGWHVGKEIFVISGDTSPEDRELAMDQFNN-SADAKVLFGSIKACGEGISLVGAS 882
Query: 515 RVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
RVV+LDV NP V RQAI RA+R GQ++ V VY L+ +++ E
Sbjct: 883 RVVVLDVHLNPSVTRQAIGRAFRPGQQKKVFVYRLVAADSAE 924
>gi|413917481|gb|AFW57413.1| hypothetical protein ZEAMMB73_835296 [Zea mays]
Length = 950
Score = 261 bits (667), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 169/520 (32%), Positives = 272/520 (52%), Gaps = 67/520 (12%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
+ M PHQ EGF F+ KN+ G GCI++HAPG+GKT L + F+Q++
Sbjct: 408 QAMKPHQVEGFNFLVKNLIGD-------------KPGGCILAHAPGSGKTFLLISFIQSF 454
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKR 186
M +P RP+++ P+ +L+ W++E ++W + DIP Y+ +
Sbjct: 455 MARYPSARPLVVLPKGILVIWKKEIQRWQVQDIPVYDFYSV------------------K 496
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGI-------LLDLPGLFVFD 239
+V ++ +K SW+ GIL L Y+ F +V+ D S + LL +P L + D
Sbjct: 497 AEKRVEQLQILK--SWEDKMGILFLGYKQFSTIVTDDGGSKVTAACRDRLLKVPNLLILD 554
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF---------- 289
EGHTPRN +T + ++LSR++T R+++LSGT FQN+ +E+ N L+LVR +F
Sbjct: 555 EGHTPRNKETDVLESLSRVETPRKVVLSGTLFQNHVEEVFNILNLVRPKFLRMESSRPIA 614
Query: 290 GEVLRTVRKSGREISKAKHASLISSI-GRCANHRDDEK----LKELKEKIAPFVNVHKGT 344
++ V GR + ++ G N + ++ ++ L+E ++ +KG
Sbjct: 615 RRIMSQVEIFGRSSKGLADGAFTEAVEGTLLNDENFKRKVHVIRGLRELTRDVLHYYKGA 674
Query: 345 VLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLL------PQ 398
+L E LPGL V L+ QK + +E F + + S L +HP L +
Sbjct: 675 ILDE-LPGLVDFSVFLKLTPKQKDIVHKLEMHDRF-KRSAVGSALYIHPCLSGLSEVNAE 732
Query: 399 QFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQL 456
+ DS ++ G+K F + +L L S EKVL FSQYI P+T L
Sbjct: 733 NRAHTLRDDSVDSLMDSINVRDGVKANFFMNILSLANSAGEKVLAFSQYILPMTFFERLL 792
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
+ W G+E+ + G + R+++++ N S+ A+++ S +AC EGI++VGASRV
Sbjct: 793 VKKKGWHVGREIFMISGDTSQEDREAAVDRFN-SSADAKVLFGSIRACGEGISIVGASRV 851
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
V+LDV NP V RQAI RA+R GQ++ V VY L+ +++ E
Sbjct: 852 VILDVHLNPSVTRQAIGRAFRPGQQKKVFVYRLVAADSDE 891
>gi|225427685|ref|XP_002273814.1| PREDICTED: DNA repair and recombination protein RAD54-like [Vitis
vinifera]
Length = 903
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 177/557 (31%), Positives = 280/557 (50%), Gaps = 75/557 (13%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM 128
+M PHQ EGF F+ N+ GCI++HAPG+GKT + + F+Q+++
Sbjct: 356 QMKPHQVEGFNFLVSNLVAE-------------NPGGCILAHAPGSGKTFMIISFMQSFL 402
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKRG 187
+P+ RP+++ P+ +L TW++EF W + DIP Y+ + + V
Sbjct: 403 AKYPQARPLVVLPKGILATWKKEFLTWQVEDIPLYDFYSVKADSRPQQLEV--------- 453
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG-------ILLDLPGLFVFDE 240
L W IL L Y+ F +V GD S ILL P + + DE
Sbjct: 454 -----------LKQWVAEKSILFLGYKQFSSIVCGDGASKATIACQEILLKAPQILILDE 502
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-------GEVL 293
GHTPRN++T + +L++++T R+++LSGT +QN+ +E+ N L+LVR +F V
Sbjct: 503 GHTPRNENTDVLYSLAKVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKLESSRAVVK 562
Query: 294 RTVRKSG----REISKAKHASLISSIGRCANHRDDE------KLKELKEKIAPFVNVHKG 343
R + K R+ K+ A + +DD +++L+E + ++ +KG
Sbjct: 563 RIMSKVDIMGVRKQLKSNAADAFYDLVENTLQKDDNFRRKITVIQDLREMTSKVLHYYKG 622
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFES 403
L E LPGL V+L QK+ + + + N S + +HP L + F E
Sbjct: 623 DFLDE-LPGLVDFTVLLNLSARQKKEVGNLNKFERKFKKNSVGSAVYLHPQL--KYFAEK 679
Query: 404 FDVDSAKLARL-----------KLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLT 450
+ +K + +LD G+K +F L +L L S+ EK+LVFSQY+ PL
Sbjct: 680 LAANESKTDEMTCQKKMDEILEQLDVRDGVKAKFFLNVLALCQSSGEKLLVFSQYLLPLR 739
Query: 451 LIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINL 510
+ + W G+E+ + G+ ++R+ S+ N S AR+ S KAC EGI+L
Sbjct: 740 FLEKLTMKVKGWSPGKEIFAISGESSSEQREWSMERFN-TSPDARVFFGSIKACGEGISL 798
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS 570
VGASRV++LDV NP V RQAI RA+R GQK+ VHVY L+ +++ E + +K S
Sbjct: 799 VGASRVLILDVHLNPSVTRQAIGRAFRPGQKKKVHVYKLVAADSPEEEDHNSCFKKELIS 858
Query: 571 NMVFPSSDGGGNDQTTA 587
M F ++ G+ + A
Sbjct: 859 KMWFEWNEYCGHHEFEA 875
>gi|449527951|ref|XP_004170971.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A containing DEAD/H box
1B-like [Cucumis sativus]
Length = 903
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 173/521 (33%), Positives = 272/521 (52%), Gaps = 63/521 (12%)
Query: 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLV 122
PR + K+M PHQ EGF F+ N+ + GCI++HAPG+GKT + +
Sbjct: 360 PRHM-KQMKPHQIEGFNFLISNLV-------------SDNPGGCILAHAPGSGKTFMIIS 405
Query: 123 FLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALM 181
F+Q+++ +P+ RP+++ P+ +L TW++EF+ W + DIP Y+ S K +N A L
Sbjct: 406 FMQSFLAKYPQARPLVVLPKGILATWKKEFQIWQVEDIPLYDF----YSVKADNRAQQL- 460
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG-------ILLDLPG 234
L W IL L Y+ F +V E S ILL +P
Sbjct: 461 ---------------TVLNQWVEHKSILFLGYKQFSTIVCDVETSAASTACQNILLQVPT 505
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF--GEV 292
+ + DEGHTPRN++T + L++++T R+++LSGT +QN+ +E+ N ++LVR +F E
Sbjct: 506 ILILDEGHTPRNENTDTLQTLAKVRTPRKVVLSGTLYQNHVKEVFNIVNLVRPKFMRSET 565
Query: 293 LRTVRK---SGREISKAKH---ASLISSIGRCANH---------RDDEKLKELKEKIAPF 337
R + K S +I A+ A + ++ H R + +L+E +
Sbjct: 566 SRPIIKRIMSRVDIPGARKQFKAGVDAAFYDLVEHTLQKDTDFRRKVSVIHDLREMTSKI 625
Query: 338 VNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLP 397
++ +KG L E LPGL V+L QK + V+ +++ S + +HP L
Sbjct: 626 LHYYKGDFLDE-LPGLVDFTVVLNLTSKQKHEGEKVKKFNRKFKISSAGSAVYLHPKLNV 684
Query: 398 QQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQ 455
+ D K+D + G+KT+F L LL L +T EK+LVFSQY+ PL +
Sbjct: 685 FSVNAAVTDDKIDEVIDKMDVKDGVKTKFFLNLLNLCATTGEKLLVFSQYLLPLKFMERL 744
Query: 456 LRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515
+ + W G+E + G+ ++R+ S+ N+ S AR+ S KAC EGI+LVGASR
Sbjct: 745 VVQKKGWSPGRETFMISGETTPEQREWSMERFNN-SPDARVFFGSIKACGEGISLVGASR 803
Query: 516 VVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
+++LDV NP V RQAI RA+R GQ + V Y L+ ++ E
Sbjct: 804 IIILDVHLNPSVTRQAIGRAFRPGQTKKVFAYRLVAGDSPE 844
>gi|449464714|ref|XP_004150074.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A containing DEAD/H box
1B-like [Cucumis sativus]
Length = 903
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 173/521 (33%), Positives = 272/521 (52%), Gaps = 63/521 (12%)
Query: 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLV 122
PR + K+M PHQ EGF F+ N+ + GCI++HAPG+GKT + +
Sbjct: 360 PRHM-KQMKPHQIEGFNFLISNLV-------------SDNPGGCILAHAPGSGKTFMIIS 405
Query: 123 FLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALM 181
F+Q+++ +P+ RP+++ P+ +L TW++EF+ W + DIP Y+ S K +N A L
Sbjct: 406 FMQSFLAKYPQARPLVVLPKGILATWKKEFQIWQVEDIPLYDF----YSVKADNRAQQL- 460
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG-------ILLDLPG 234
L W IL L Y+ F +V E S ILL +P
Sbjct: 461 ---------------TVLNQWVEHKSILFLGYKQFSTIVCDVETSAASTACQNILLQVPT 505
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF--GEV 292
+ + DEGHTPRN++T + L++++T R+++LSGT +QN+ +E+ N ++LVR +F E
Sbjct: 506 ILILDEGHTPRNENTDTLQTLAKVRTPRKVVLSGTLYQNHVKEVFNIVNLVRPKFMRSET 565
Query: 293 LRTVRK---SGREISKAKH---ASLISSIGRCANH---------RDDEKLKELKEKIAPF 337
R + K S +I A+ A + ++ H R + +L+E +
Sbjct: 566 SRPIIKRIMSRVDIPGARKQFKAGVDAAFYDLVEHTLQKDTDFRRKVSVIHDLREMTSKI 625
Query: 338 VNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLP 397
++ +KG L E LPGL V+L QK + V+ +++ S + +HP L
Sbjct: 626 LHYYKGDFLDE-LPGLVDFTVVLNLTSKQKHEGEKVKKFNRKFKISSAGSAVYLHPKLNV 684
Query: 398 QQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQ 455
+ D K+D + G+KT+F L LL L +T EK+LVFSQY+ PL +
Sbjct: 685 FSVNAAVTDDKIDEVIDKMDVKDGVKTKFFLNLLNLCATTGEKLLVFSQYLLPLKFMERL 744
Query: 456 LRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515
+ + W G+E + G+ ++R+ S+ N+ S AR+ S KAC EGI+LVGASR
Sbjct: 745 VVQKKGWSPGRETFMISGETTPEQREWSMERFNN-SPDARVFFGSIKACGEGISLVGASR 803
Query: 516 VVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
+++LDV NP V RQAI RA+R GQ + V Y L+ ++ E
Sbjct: 804 IIILDVHLNPSVTRQAIGRAFRPGQTKKVFAYRLVAGDSPE 844
>gi|147773526|emb|CAN62867.1| hypothetical protein VITISV_015925 [Vitis vinifera]
Length = 1187
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 177/557 (31%), Positives = 280/557 (50%), Gaps = 75/557 (13%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM 128
+M PHQ EGF F+ N+ GCI++HAPG+GKT + + F+Q+++
Sbjct: 582 QMKPHQVEGFNFLVSNLVAE-------------NPGGCILAHAPGSGKTFMIISFMQSFL 628
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKRG 187
+P+ RP+++ P+ +L TW++EF W + DIP Y+ + + V
Sbjct: 629 AKYPQARPLVVLPKGILATWKKEFLTWQVEDIPLYDFYSVKADSRPQQLEV--------- 679
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG-------ILLDLPGLFVFDE 240
L W IL L Y+ F +V GD S ILL P + + DE
Sbjct: 680 -----------LKQWVAEKSILFLGYKQFSSIVCGDGASKATIACQEILLKAPQILILDE 728
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-------GEVL 293
GHTPRN++T + +L++++T R+++LSGT +QN+ +E+ N L+LVR +F V
Sbjct: 729 GHTPRNENTDVLYSLAKVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKLESSRAVVK 788
Query: 294 RTVRKSG----REISKAKHASLISSIGRCANHRDDE------KLKELKEKIAPFVNVHKG 343
R + K R+ K+ A + +DD +++L+E + ++ +KG
Sbjct: 789 RIMSKVDIMGVRKQLKSNAADAFYDLVENTLQKDDNFRRKITVIQDLREMTSKVLHYYKG 848
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFES 403
L E LPGL V+L QK+ + + + N S + +HP L + F E
Sbjct: 849 DFLDE-LPGLVDFTVLLNLSARQKKEVGNLNKFERKFKKNSVGSAVYLHPQL--KYFAEK 905
Query: 404 FDVDSAKLARL-----------KLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLT 450
+ +K + +LD G+K +F L +L L S+ EK+LVFSQY+ PL
Sbjct: 906 LAANESKTDEMTCQKKMDEILEQLDVRDGVKAKFFLNVLALCQSSGEKLLVFSQYLLPLR 965
Query: 451 LIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINL 510
+ + W G+E+ + G+ ++R+ S+ N S AR+ S KAC EGI+L
Sbjct: 966 FLEKLTMKVKGWSPGKEIFAISGESSSEQREWSMERFN-TSPDARVFFGSIKACGEGISL 1024
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS 570
VGASRV++LDV NP V RQAI RA+R GQK+ VHVY L+ +++ E + +K S
Sbjct: 1025 VGASRVLILDVHLNPSVTRQAIGRAFRPGQKKKVHVYKLVAADSPEEEDHNSCFKKELIS 1084
Query: 571 NMVFPSSDGGGNDQTTA 587
M F ++ G+ + A
Sbjct: 1085 KMWFEWNEYCGHHEFEA 1101
>gi|15227191|ref|NP_179232.1| SNF2 and helicase domain-containing protein [Arabidopsis thaliana]
gi|4544390|gb|AAD22300.1| hypothetical protein [Arabidopsis thaliana]
gi|330251398|gb|AEC06492.1| SNF2 and helicase domain-containing protein [Arabidopsis thaliana]
Length = 888
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 178/538 (33%), Positives = 277/538 (51%), Gaps = 71/538 (13%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM 128
+M PHQ EGF+F+ N+ GCI++HAPG+GKT + + F+Q+++
Sbjct: 349 EMKPHQIEGFQFLCSNLVAD-------------DPGGCIMAHAPGSGKTFMIISFMQSFL 395
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKRG 187
+P+ +P+++ P+ +L TW++EF +W + DIP + S K N A L
Sbjct: 396 AKYPQAKPLVVLPKGILPTWKKEFVRWQVEDIPLLDF----YSAKAENRAQQLS------ 445
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG-----ILLDLPGLFVFDEGH 242
L W IL L Y+ F +V D ILL +P + + DEGH
Sbjct: 446 ----------ILKQWMEKKSILFLGYQQFSTIVCDDTTDSLSCQEILLKVPSILILDEGH 495
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
TPRN+DT + ++L++++T R+++LSGT +QN+ +E+ N L+LVR +F + L T + + +
Sbjct: 496 TPRNEDTNLLQSLAQVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLK-LDTSKSAVKR 554
Query: 303 I--------------SKAKHASLIS-SIGRCANHRDDEKLK-----ELKEKIAPFVNVHK 342
I S + AS+ + ++ +D +K +L+E ++ +K
Sbjct: 555 ILAYTPCDVRGRLTGSNSDMASMFNETVEHTLQKSEDFTVKIKVIQDLREMTKKVLHYYK 614
Query: 343 GTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFF- 401
G L E LPGL V+L Q K + K +++ S + +HP L + F
Sbjct: 615 GDFLDE-LPGLADFTVVLNLSPKQLNEVKKLRREKRKFKVSAVGSAIYLHPKL---KVFS 670
Query: 402 -ESFDVDSAKLARL--KLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQL 456
+S DV + + KLD G+K +F L L+ L S EK+LVFSQY+ PL +
Sbjct: 671 DKSDDVSDTTMDEMVEKLDLNEGVKAKFFLNLINLCDSAGEKLLVFSQYLIPLKFLERLA 730
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
W+ G+EV + G ++R+ S+ N S A+I S KAC EGI+LVGASR+
Sbjct: 731 ALAKGWKLGKEVFVLTGNTSSEQREWSMETFNS-SPDAKIFFGSIKACGEGISLVGASRI 789
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVF 574
++LDV NP V RQAI RA+R GQK++VH Y LI + E + +K S M F
Sbjct: 790 LILDVPLNPSVTRQAIGRAFRPGQKKMVHAYRLIAGSSPEEEDHNTCFKKEVISKMWF 847
>gi|356544159|ref|XP_003540522.1| PREDICTED: DNA repair protein rhp54-like [Glycine max]
Length = 883
Score = 259 bits (661), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 176/536 (32%), Positives = 286/536 (53%), Gaps = 62/536 (11%)
Query: 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLV 122
PR + K+M PHQ EGF F+ +N+AG GCI++HAPG+GKT + +
Sbjct: 345 PRHM-KQMKPHQVEGFNFLVRNLAGD-------------HPGGCILAHAPGSGKTFMIIS 390
Query: 123 FLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALM 181
F+Q+++ +P RP+++ P+ +L TW++EF+ W + DIP Y+L + + V
Sbjct: 391 FMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDLYTVKADSRSQQLEV--- 447
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG-------ILLDLPG 234
L W IL L Y+ F +V + + ILL +P
Sbjct: 448 -----------------LKQWMEQKSILFLGYKQFSSIVCDNGTNNTSLSCQEILLKIPT 490
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294
+ + DEGH PRN++T M ++L++++T R+++LSGT +QN+ +E+ N L+LVR +F + +
Sbjct: 491 ILILDEGHNPRNENTDMVQSLAKVQTARKVVLSGTLYQNHVREVFNILNLVRPKFLK-ME 549
Query: 295 TVRKSGREISKAKHASLISSIGRCANH---------RDDEKLKELKEKIAPFVNVHKGTV 345
T R R I H + S + R +++L+E + ++ +KG
Sbjct: 550 TSRPIVRRIHSRVHIPGVRSFYDLVENTLQKDTDFKRKIAVIQDLREMTSKVLHYYKGDF 609
Query: 346 LQESLPGLRHSVVILQPDEFQKRLCKAVEGV-KSFVELNYCVSLLSVHPSLLP--QQFFE 402
L E LPGL V+L QK + ++ + + ++N S + +HP L P + E
Sbjct: 610 LDE-LPGLVDFTVVLTLSPRQKPEIQKLKKLSRRKFKINSVGSAVYLHPKLKPLAENCGE 668
Query: 403 SFDVDSAKLARL-KLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQLRHR 459
+ D+ + KLD G+K++F +L L S EK+LVFSQY+ PL +E+L +
Sbjct: 669 NSTSDNIMDDLIEKLDMRDGVKSKFYYNMLNLCESAGEKLLVFSQYLLPLKY-LERLTMK 727
Query: 460 FN-WREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVL 518
+ W G+E+ + G+ ++R+ S+ N+ S AR+ S KAC EGI+LVGASR+++
Sbjct: 728 WKGWSLGREIFVISGESSSEQREWSMEKFNN-SPDARVFFGSIKACGEGISLVGASRIII 786
Query: 519 LDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVF 574
LDV NP V RQAI RA+R GQ + V VY L+++++ E + +K S M F
Sbjct: 787 LDVHLNPSVTRQAIGRAFRPGQMKKVFVYRLVSADSPEEEDHNTCFKKELISKMWF 842
>gi|413921336|gb|AFW61268.1| hypothetical protein ZEAMMB73_120769 [Zea mays]
Length = 1099
Score = 258 bits (660), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 177/531 (33%), Positives = 268/531 (50%), Gaps = 80/531 (15%)
Query: 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLV 122
PR R M PHQ EGF F+ KN+ G GCI++HAPGTGKT + +
Sbjct: 553 PRHARI-MKPHQLEGFNFLVKNLIGD-------------KPGGCILAHAPGTGKTFMLIS 598
Query: 123 FLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALM 181
F+Q++M +P RP+++ P+ +L W+ E K+W + DIP Y+
Sbjct: 599 FIQSFMARYPSARPLVVLPKGILGIWKTEIKRWQVQDIPVYDFYSV-------------- 644
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGI-------LLDLPG 234
+ +V ++ +K SW+ IL L Y+ F +V+ D S + LL +P
Sbjct: 645 ----KAEKRVEQLQILK--SWEDKMSILFLGYKQFSTIVTDDGGSNVTAACRDRLLKVPN 698
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294
L + DEGHTPRN +T + ++L+R++T R+++LSGT FQN+ +E+ N L+LVR +F +
Sbjct: 699 LLILDEGHTPRNRETNVLESLNRVETPRKVVLSGTLFQNHVEEVFNILNLVRPKFLR-ME 757
Query: 295 TVRKSGREISKAKHASLISSIGRCAN---------------------HRDDEKLKELKEK 333
+ R + R I S + +GR + R ++ L+E
Sbjct: 758 SSRPTARRI-----MSQVEIVGRSSKGLADGAFTKAVEETLLNDENFKRKAHVIRGLREL 812
Query: 334 IAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHP 393
++ +KG +L E LPGL V L+ QK + +E F + N S L +HP
Sbjct: 813 TKDVLHYYKGDILDE-LPGLVDFSVFLKLTPKQKDIIYKLEAHDRF-KRNAVGSALYIHP 870
Query: 394 SLL------PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQY 445
L + +F D + G+K F + +L L S EKVL FSQY
Sbjct: 871 CLSELSEVNAEHRANTFRDDLVDSLVDSITVRDGVKANFFMNILSLANSAGEKVLAFSQY 930
Query: 446 IEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACC 505
I P+ L + W G+E+ + G + R+ + + N+ S+ A+IM S KAC
Sbjct: 931 ISPMIFFERLLVKKKGWHVGKEIFMISGDTSQEDRELATDHFNN-SADAKIMFGSIKACG 989
Query: 506 EGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
EGI+LVGASRVV+LDV NP V RQAI RA+R GQ++ V VY L+ +++ E
Sbjct: 990 EGISLVGASRVVILDVHLNPSVTRQAIGRAFRPGQQKKVFVYRLVAADSDE 1040
>gi|302793320|ref|XP_002978425.1| hypothetical protein SELMODRAFT_109142 [Selaginella moellendorffii]
gi|300153774|gb|EFJ20411.1| hypothetical protein SELMODRAFT_109142 [Selaginella moellendorffii]
Length = 508
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 177/509 (34%), Positives = 266/509 (52%), Gaps = 51/509 (10%)
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNL 164
GCI++HAPGTGKT T+ F Y ++ CR +++ P+ + W EEF+K +D PF+
Sbjct: 15 GCILAHAPGTGKTFATVYFYSKYKEIMAGCRLLVLCPKMVQNVWREEFRKSQMDTPFF-- 72
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
+ +RK R +V L W G+L + + LF K+ E
Sbjct: 73 ----------------LSSRKSRRLEV-------LSRWHRQRGVLVMGFTLFMKMSLKKE 109
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
+L+ P L + DEGHT R++ T + A+ +KT+ RI+LSGT FQN F+EL N + L
Sbjct: 110 YRSYMLESPELVILDEGHTLRSNGTLLRNAVMNMKTKLRILLSGTLFQNTFEELFNLIFL 169
Query: 285 VRQEFGEVLRTVRKSGREISKAKHASLISSIGRCAN----HRDDEKLK-ELKEKIAPFVN 339
R F + L+ ++ R I IGR + HR+ + + +L + F +
Sbjct: 170 ARPNFIQQLQMEDRARR--------WFIKEIGRKFDDGHGHREMQAAQMKLVKMTQGFTD 221
Query: 340 VHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQ 399
+ G +L E LPGLR + E Q +L AV G +E++ + +S+HP L
Sbjct: 222 HYTGAILTEVLPGLRDYEITTVMTELQHKLVAAVAGT---LEMDITRTRISIHPLLRSA- 277
Query: 400 FFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLR 457
E+ D + +A +D A +KT F++ L+EL NEKVLVF +++ P L++ L
Sbjct: 278 --EAAGGDFSAVAAEVVDVRASMKTAFVMKLIELCQCANEKVLVFGEFLAPFHLLLRMLE 335
Query: 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
W +EV+++ G ++R ++ N S+AR+ LAS +AC EGI LVGASRVV
Sbjct: 336 LERGWSRDKEVVFLHGALVTEERHELMDRFNAEGSEARVCLASIRACAEGITLVGASRVV 395
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSS 577
LL VWNP QAISRA+RLGQKR V VY L+T +E K R K + S +F ++
Sbjct: 396 LLHPVWNPAQTNQAISRAFRLGQKRKVFVYRLVTE--VERVKNSRTKWKDFCSEAIFETA 453
Query: 578 DGGG-NDQTTASEPLEDKILEE--MAQLY 603
Q AS E+ E+ +AQ++
Sbjct: 454 GSAAPRPQEPASLSAEEIFSEDKLLAQIH 482
>gi|297721831|ref|NP_001173279.1| Os03g0165266 [Oryza sativa Japonica Group]
gi|255674231|dbj|BAH92007.1| Os03g0165266 [Oryza sativa Japonica Group]
Length = 1078
Score = 256 bits (653), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 198/614 (32%), Positives = 303/614 (49%), Gaps = 94/614 (15%)
Query: 37 SRDSGFDSQTGCDPFTHAQGTVWELVPRDV------RKKMFPHQREGFEFIWKNIAGGID 90
+R S + + D G + E+VP + + M PHQ EGF F+ KN+A
Sbjct: 494 ARPSEHRNSSDADAIDKTSGAILEVVPDALCLHPQHSQHMKPHQVEGFNFLVKNLA---- 549
Query: 91 LDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEE 150
DE GCI++HAPG+GKT L + F+ +++ +P RP+II P+ +L TW
Sbjct: 550 -DE-------NNPGGCILAHAPGSGKTFLIISFVHSFLAKYPAGRPLIILPKGILSTWRT 601
Query: 151 EFKKWGID-IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGIL 209
EF W +D IP Y+ S K + + L KV L W+ IL
Sbjct: 602 EFLHWQVDDIPLYDF----YSSKADKRSEQL---------KV-------LNLWEESRSIL 641
Query: 210 GLSYRLFEKLVSGDELSGI--------LLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTR 261
L Y+ F +VS D S LL +P L + DEGHTPRN++T + +L I+T
Sbjct: 642 LLGYQQFACIVS-DHTSDTEAIMCQEKLLKVPSLVILDEGHTPRNEETDLLTSLENIRTP 700
Query: 262 RRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANH 321
R+++LSGT FQN+ +E+ N L LVR +F ++ ++ +SK L+ R N
Sbjct: 701 RKVVLSGTLFQNHVREVFNILKLVRSKFLKMDKSRAIVNCILSKV---DLMGKSARSKNI 757
Query: 322 RD---------------DEKLK-----ELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQ 361
D ++K++ L+E A ++ ++G +L E LPG+ V L
Sbjct: 758 SDKDFFDLVQEHLQKDGNDKMRAVIIQNLRELTADVLHYYQGKLLDE-LPGIVDFTVFLN 816
Query: 362 PDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEA- 420
Q+ + K ++G+ F + + C + +S+HP L + D D + K+
Sbjct: 817 MSSKQEHIIKGLDGINKFAKRSRC-NAVSLHPCL---KNANKADADDGNVTNRKIGSIIS 872
Query: 421 ------GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFN-WREGQEVLYM 471
G+K +F+ LL LS T KVLVFSQY+ L + +E+L R W+ + +
Sbjct: 873 GIDINDGVKAKFVHNLLSLSEATGGKVLVFSQYVRSL-IFLEKLVSRMKGWKSEVHIFRV 931
Query: 472 DGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531
G +R+ +++ N+ S AR+ S KAC EGI+LVGASR+V+LDV NP V RQA
Sbjct: 932 TGGSTQDQREQAVHRFNN-SPDARVFFGSIKACGEGISLVGASRIVILDVHENPSVMRQA 990
Query: 532 ISRAYRLGQKRVVHVYHLITSETLEWDKL-----RRQARKVWWSNMVFPSSDGGGNDQTT 586
I RAYR GQ ++V+ Y L+ +++ E D + + K+W+ SSD
Sbjct: 991 IGRAYRPGQSKMVYCYRLVAADSPEEDDHHTAFKKERVSKLWFEWNELCSSDDFELATVD 1050
Query: 587 ASEPLEDKILEEMA 600
S+ ED+ LE A
Sbjct: 1051 VSDS-EDRFLESSA 1063
>gi|222624248|gb|EEE58380.1| hypothetical protein OsJ_09537 [Oryza sativa Japonica Group]
Length = 1474
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 198/614 (32%), Positives = 303/614 (49%), Gaps = 94/614 (15%)
Query: 37 SRDSGFDSQTGCDPFTHAQGTVWELVPRDV------RKKMFPHQREGFEFIWKNIAGGID 90
+R S + + D G + E+VP + + M PHQ EGF F+ KN+A
Sbjct: 882 ARPSEHRNSSDADAIDKTSGAILEVVPDALCLHPQHSQHMKPHQVEGFNFLVKNLA---- 937
Query: 91 LDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEE 150
DE GCI++HAPG+GKT L + F+ +++ +P RP+II P+ +L TW
Sbjct: 938 -DE-------NNPGGCILAHAPGSGKTFLIISFVHSFLAKYPAGRPLIILPKGILSTWRT 989
Query: 151 EFKKWGID-IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGIL 209
EF W +D IP Y+ S K + + L KV L W+ IL
Sbjct: 990 EFLHWQVDDIPLYDF----YSSKADKRSEQL---------KV-------LNLWEESRSIL 1029
Query: 210 GLSYRLFEKLVSGDELSGI--------LLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTR 261
L Y+ F +VS D S LL +P L + DEGHTPRN++T + +L I+T
Sbjct: 1030 LLGYQQFACIVS-DHTSDTEAIMCQEKLLKVPSLVILDEGHTPRNEETDLLTSLENIRTP 1088
Query: 262 RRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANH 321
R+++LSGT FQN+ +E+ N L LVR +F ++ ++ +SK L+ R N
Sbjct: 1089 RKVVLSGTLFQNHVREVFNILKLVRSKFLKMDKSRAIVNCILSKV---DLMGKSARSKNI 1145
Query: 322 RD---------------DEKLK-----ELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQ 361
D ++K++ L+E A ++ ++G +L E LPG+ V L
Sbjct: 1146 SDKDFFDLVQEHLQKDGNDKMRAVIIQNLRELTADVLHYYQGKLLDE-LPGIVDFTVFLN 1204
Query: 362 PDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEA- 420
Q+ + K ++G+ F + + C + +S+HP L + D D + K+
Sbjct: 1205 MSSKQEHIIKGLDGINKFAKRSRC-NAVSLHPCL---KNANKADADDGNVTNRKIGSIIS 1260
Query: 421 ------GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRF-NWREGQEVLYM 471
G+K +F+ LL LS T KVLVFSQY+ L + +E+L R W+ + +
Sbjct: 1261 GIDINDGVKAKFVHNLLSLSEATGGKVLVFSQYVRSL-IFLEKLVSRMKGWKSEVHIFRV 1319
Query: 472 DGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531
G +R+ +++ N+ S AR+ S KAC EGI+LVGASR+V+LDV NP V RQA
Sbjct: 1320 TGGSTQDQREQAVHRFNN-SPDARVFFGSIKACGEGISLVGASRIVILDVHENPSVMRQA 1378
Query: 532 ISRAYRLGQKRVVHVYHLITSETLEWDKL-----RRQARKVWWSNMVFPSSDGGGNDQTT 586
I RAYR GQ ++V+ Y L+ +++ E D + + K+W+ SSD
Sbjct: 1379 IGRAYRPGQSKMVYCYRLVAADSPEEDDHHTAFKKERVSKLWFEWNELCSSDDFELATVD 1438
Query: 587 ASEPLEDKILEEMA 600
S+ ED+ LE A
Sbjct: 1439 VSDS-EDRFLESSA 1451
>gi|20219037|gb|AAM15781.1|AC104428_2 Hypothetical protein [Oryza sativa Japonica Group]
gi|108706352|gb|ABF94147.1| SNF2 domain-containing protein, putative, expressed [Oryza sativa
Japonica Group]
Length = 1197
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 190/613 (30%), Positives = 294/613 (47%), Gaps = 92/613 (15%)
Query: 37 SRDSGFDSQTGCDPFTHAQGTVWELVPRDV------RKKMFPHQREGFEFIWKNIAGGID 90
+R S + + D G + E+VP + + M PHQ EGF F+ KN+A
Sbjct: 617 ARPSEHRNSSDADAIDKTSGAILEVVPDALCLHPQHSQHMKPHQVEGFNFLVKNLA---- 672
Query: 91 LDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEE 150
DE GCI++HAPG+GKT L + F+ +++ +P RP+II P+ +L TW
Sbjct: 673 -DE-------NNPGGCILAHAPGSGKTFLIISFVHSFLAKYPAGRPLIILPKGILSTWRT 724
Query: 151 EFKKWGID-IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGIL 209
EF W +D IP Y+ + + V L W+ IL
Sbjct: 725 EFLHWQVDDIPLYDFYSSKADKRSEQLKV--------------------LNLWEESRSIL 764
Query: 210 GLSYRLFEKLVSGDELSGI--------LLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTR 261
L Y+ F +VS D S LL +P L + DEGHTPRN++T + +L I+T
Sbjct: 765 LLGYQQFACIVS-DHTSDTEAIMCQEKLLKVPSLVILDEGHTPRNEETDLLTSLENIRTP 823
Query: 262 RRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANH 321
R+++LSGT FQN+ +E+ N L LVR +F ++ ++ +SK L+ R N
Sbjct: 824 RKVVLSGTLFQNHVREVFNILKLVRSKFLKMDKSRAIVNCILSKV---DLMGKSARSKNI 880
Query: 322 RDDE--------------------KLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQ 361
D + ++ L+E A ++ ++G +L E LPG+ V L
Sbjct: 881 SDKDFFDLVQEHLQKDGNDKMRAVIIQNLRELTADVLHYYQGKLLDE-LPGIVDFTVFLN 939
Query: 362 PDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEA- 420
Q+ + K ++G+ F + + C + +S+HP L + D D + K+
Sbjct: 940 MSSKQEHIIKGLDGINKFAKRSRC-NAVSLHPCL---KNANKADADDGNVTNRKIGSIIS 995
Query: 421 ------GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMD 472
G+K +F+ LL LS T KVLVFSQY+ L + + + W+ + +
Sbjct: 996 GIDINDGVKAKFVHNLLSLSEATGGKVLVFSQYVRSLIFLEKLVSRMKGWKSEVHIFRVT 1055
Query: 473 GKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAI 532
G +R+ +++ N+ S AR+ S KAC EGI+LVGASR+V+LDV NP V RQAI
Sbjct: 1056 GGSTQDQREQAVHRFNN-SPDARVFFGSIKACGEGISLVGASRIVILDVHENPSVMRQAI 1114
Query: 533 SRAYRLGQKRVVHVYHLITSETLEWDKL-----RRQARKVWWSNMVFPSSDGGGNDQTTA 587
RAYR GQ ++V+ Y L+ +++ E D + + K+W+ SSD
Sbjct: 1115 GRAYRPGQSKMVYCYRLVAADSPEEDDHHTAFKKERVSKLWFEWNELCSSDDFELATVDV 1174
Query: 588 SEPLEDKILEEMA 600
S+ ED+ LE A
Sbjct: 1175 SDS-EDRFLESSA 1186
>gi|242042115|ref|XP_002468452.1| hypothetical protein SORBIDRAFT_01g046180 [Sorghum bicolor]
gi|241922306|gb|EER95450.1| hypothetical protein SORBIDRAFT_01g046180 [Sorghum bicolor]
Length = 976
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 186/577 (32%), Positives = 288/577 (49%), Gaps = 88/577 (15%)
Query: 21 WREYNNVDPSFLDDLNSRDSGFDSQTGCDPFTHAQGTVWELVPRDVR------KKMFPHQ 74
W++ N S+ + R+SG D +A GT+ + P + ++M PHQ
Sbjct: 371 WKKRNQAYRSY--PIKQRNSG-----DPDATMNALGTILSVAPDTLSLHPQHSEQMKPHQ 423
Query: 75 REGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRC 134
EGF F+ KN+A DE GCI++HAPG+GKT L + F+ +++ +P
Sbjct: 424 VEGFNFLIKNLA-----DE-------DNPGGCILAHAPGSGKTFLLISFVHSFLARYPAG 471
Query: 135 RPVIIAPRSMLLTWEEEFKKWGID-IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGL 193
RP+I+ P+ +L TW+ EF W ++ IP Y+ + S +
Sbjct: 472 RPLIMLPKGILGTWKSEFLCWQVENIPLYDFYSSKASSRPEQ------------------ 513
Query: 194 IRYVKLYSWKMGTGILGLSYRLFEKLVSGDE-------LSGILLDLPGLFVFDEGHTPRN 246
++ +KL W+ IL L Y+ F ++S + LL +P L + DEGHT RN
Sbjct: 514 LKVLKL--WEESKSILLLGYQQFAHIISDNSSDRETIMCKEKLLRVPSLVILDEGHTSRN 571
Query: 247 DDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRT--VRKS----- 299
D T + AL I+T R+++LSGT FQN+ E+ N L+LVR F ++ R+ + KS
Sbjct: 572 DQTDLLNALETIRTPRKVVLSGTLFQNHVSEVFNILNLVRPRFLKMQRSRAIMKSILTKL 631
Query: 300 --------GREISKAKHASLISSIGRCANHRDDEK------LKELKEKIAPFVNVHKGTV 345
+ IS+ LI N + D K ++ L++ ++ ++G +
Sbjct: 632 DMSGMAIRSKMISEKVFFELIEE-----NLQKDSKTMRVMIIQNLRKLTENILHYYQGEI 686
Query: 346 LQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFD 405
L+E LPGL V+L Q+ + K + G+K F C + +S+HP L + + +
Sbjct: 687 LKE-LPGLVDFTVLLNMSSKQEDIIKGLAGLKRFEAHAKC-NAVSLHPCLKDVKIVDKKN 744
Query: 406 VDSAKLAR----LKLDPEAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHR 459
+ K +D G+K +F+ LL LS EKVLVFSQY+ L +
Sbjct: 745 RNINKRMMDSIVCGIDISDGVKAKFIHNLLSLSEAAGEKVLVFSQYVRSLHFLETLFTKM 804
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
W+ G MDG ++R+ +I N+ S +A++ S KAC EGI+LVGASR+V+L
Sbjct: 805 KGWKPGVNTFLMDGSSTQEQREQAIERFNN-SPKAKVFFGSIKACGEGISLVGASRIVIL 863
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
DV NP V RQAI RA+R GQ +VV+ Y L+ S + E
Sbjct: 864 DVHENPAVMRQAIGRAFRPGQSKVVYCYRLVASGSSE 900
>gi|242080501|ref|XP_002445019.1| hypothetical protein SORBIDRAFT_07g002945 [Sorghum bicolor]
gi|241941369|gb|EES14514.1| hypothetical protein SORBIDRAFT_07g002945 [Sorghum bicolor]
Length = 749
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 170/520 (32%), Positives = 268/520 (51%), Gaps = 70/520 (13%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMK 129
M PHQ EGF F+ KN+ G GCI++HAPG+GKT + + F+Q++M
Sbjct: 208 MKPHQLEGFNFLVKNLIGD-------------KPGGCILAHAPGSGKTFMLISFIQSFMA 254
Query: 130 LHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKRGR 188
+P RP+++ P+ +L TW++E ++W + DIP Y+ +
Sbjct: 255 RYPSARPLVVLPKGILGTWKKEIQRWQVQDIPLYDFYSV------------------KAE 296
Query: 189 GKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGI-------LLDLPGLFVFDEG 241
+V ++ +K SW+ IL L Y+ F +V+ D S + LL +P L + DEG
Sbjct: 297 KRVEQLQILK--SWEDKMSILFLGYKQFATIVTDDGGSNVTAACRDRLLKVPNLLILDEG 354
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF----------GE 291
HTPRN +T + ++L+R++T R+++LSGT FQN+ +E+ N L+LVR +F
Sbjct: 355 HTPRNRETDVLESLNRVETPRKVVLSGTLFQNHVEEVFNILNLVRPKFLRMESSRPIARR 414
Query: 292 VLRTVRKSGREISKAKHASLISSI-GRCAN----HRDDEKLKELKEKIAPFVNVHKGTVL 346
++ V SGR ++ ++ G N R ++ L+E ++ +KG +L
Sbjct: 415 IMSQVEISGRGSKGFADSAFTEAVEGTLLNDENFKRKAHVIRGLRELTKDVLHYYKGDIL 474
Query: 347 QESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDV 406
E LPGL V L+ QK + + + + + L +HP L Q E
Sbjct: 475 DE-LPGLVDFSVFLKLTPKQKDIIRNKLESHDRFKRSAVGTALYIHPCL--SQLSEVNAE 531
Query: 407 DSAKLARLKL--------DPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQL 456
+ A R L + + G+K F + +L L S EKVL FSQYI P+ L
Sbjct: 532 NRANTLRDDLVDSLLDSINVKDGVKANFFMNILSLANSAGEKVLAFSQYILPMKFFERLL 591
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
W G+E+ + G + R+ +++ N+ S+ A+++ S KAC EGI+LVGASRV
Sbjct: 592 VKMKGWHVGKEIFMISGDTSQEDREVAVDHFNN-SADAKVLFGSIKACGEGISLVGASRV 650
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
V+LDV NP V RQAI RA+R GQ++ V VY L+ +++ E
Sbjct: 651 VILDVHLNPSVTRQAIGRAFRPGQQKKVFVYRLVAADSDE 690
>gi|356546386|ref|XP_003541607.1| PREDICTED: DNA repair and recombination protein RDH54-like [Glycine
max]
Length = 1001
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 173/542 (31%), Positives = 284/542 (52%), Gaps = 60/542 (11%)
Query: 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLV 122
PR + K+M PHQ EGF F+ +N+ G GCI++HAPG+GKT + +
Sbjct: 448 PRHM-KQMKPHQVEGFNFLARNLVGD-------------DPGGCILAHAPGSGKTFMIIS 493
Query: 123 FLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALM 181
F+Q+++ +P RP+++ P+ +L TW++EF+ W + DIP Y+ + + V
Sbjct: 494 FMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEV--- 550
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV-----SGDELS--GILLDLPG 234
L W IL L Y+ F +V S + LS ILL++P
Sbjct: 551 -----------------LKQWVEHKSILFLGYKQFSSVVCDNGASSESLSCKKILLNVPS 593
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294
+ + DEGH PRN++T M ++L + TR +++LSGT +QN+ +E+ N L+LVR +F + +
Sbjct: 594 ILILDEGHNPRNENTDMVQSLVEVHTRLKVVLSGTLYQNHVKEVFNILNLVRPKFLK-ME 652
Query: 295 TVRKSGREISKAKHASLISSIGRCANHRDDEK---------LKELKEKIAPFVNVHKGTV 345
T + R I H + S + ++ +++L+E + ++ +KG
Sbjct: 653 TSKPIVRRIRSRVHTPGVRSFYDLVENTLEKDTHFKTKVAVIQDLREMTSKVLHYYKGDF 712
Query: 346 LQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFD 405
L E LPGL V+L QK + ++ + + + S + +HP L P
Sbjct: 713 LDE-LPGLVDFTVVLNLSPRQKPEVEKLKRLSGNFKKSSVGSAVYLHPKLKPLAEKSEKG 771
Query: 406 VDSAKLARL--KLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQLRHRFN 461
+ + L KLD G+K++F L +L L S EK+LVFSQY+ PL +E+L ++
Sbjct: 772 ISDNMIDALIEKLDVRDGVKSKFFLNMLNLCESAGEKLLVFSQYLLPLKY-LERLTMKWK 830
Query: 462 -WREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
W +E+ + G+ + R+ S+ N+ S +++ S KAC EGI+LVGASR+++LD
Sbjct: 831 GWSLKREIFVISGETSSEDREWSMERFNN-SPDSKVFFGSIKACGEGISLVGASRIIILD 889
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGG 580
V NP V RQAI RA+R GQK+ V VY L+++++ E + +K S M F ++
Sbjct: 890 VHLNPSVTRQAIGRAFRPGQKKKVFVYRLVSADSPEEEDHSTCFKKELISKMWFEWNEYC 949
Query: 581 GN 582
G+
Sbjct: 950 GD 951
>gi|357120646|ref|XP_003562036.1| PREDICTED: uncharacterized protein LOC100846678 [Brachypodium
distachyon]
Length = 1322
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 186/539 (34%), Positives = 276/539 (51%), Gaps = 78/539 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
++M PHQ EGF F+ KN+A DE KN GCI++HAPG+GKT + + F+Q+Y
Sbjct: 773 QQMKPHQLEGFNFLVKNLA-----DE-KNP------GGCILAHAPGSGKTFMLISFVQSY 820
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKR 186
+ +P RP+I+ P +L TW EF +W I DIP Y+ S K NN + L
Sbjct: 821 LTKYPEGRPLIVLPVGILATWRTEFLRWQIEDIPLYDF----YSSKANNRSDQL------ 870
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD-------ELSGILLDLPGLFVFD 239
KV L W+ I+ L Y F ++VS + LL +P L + D
Sbjct: 871 ---KV-------LNLWEENRSIMLLGYEHFARIVSEHTCDTETVKCRKKLLKVPSLVILD 920
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS 299
EGHT RN +T + +L+ I+T R+++LSGT FQN+ E+ N L+LVR F ++ R+
Sbjct: 921 EGHTARNKETDLLTSLATIETPRKVVLSGTLFQNHVSEVFNILNLVRPNFLKMERSRAIV 980
Query: 300 GREISK----AKHASLISSIGRC------------ANHRDDEKLKE-LKEKIAPFVNVHK 342
R +SK K A ++ +C AN + E + E L+E A ++ ++
Sbjct: 981 KRILSKVDMFGKSAWSKNTSDKCFYDMVEENLQKDANDKIREMIIENLRELTANVLHYYQ 1040
Query: 343 GTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSL------- 395
G L E LPGL V L Q+ K+ G F + + C + +S+HP L
Sbjct: 1041 GE-LSEELPGLVDFTVFLNMTTKQEESIKSFVGQNKFSKRSNC-NAVSLHPCLKDIKNIC 1098
Query: 396 -------LPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEP 448
+ F + + S+ ++ + ++ A +K L+ L S EKVLVFSQY+
Sbjct: 1099 EKNENTTYQKIFLRNHEKISSVMSGIDINDGAKLKFIHNLLSLSESAGEKVLVFSQYVCS 1158
Query: 449 LTLIMEQLRHRF-NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEG 507
L L +E L R W+ + + G +R +I N S A+++ S KAC EG
Sbjct: 1159 L-LFLEMLFTRMKGWKPDMHMFMIHGGS--VQRDKTIERFNH-SPDAKVLFGSIKACSEG 1214
Query: 508 INLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
I+LVGASRVV+LDV NP V RQAI RA+R GQ ++V+ Y L+ +++ E D + RK
Sbjct: 1215 ISLVGASRVVILDVHENPSVMRQAIGRAFRPGQTKMVYCYRLVAADSPEEDDHKTAFRK 1273
>gi|224077876|ref|XP_002305447.1| chromatin remodeling complex subunit [Populus trichocarpa]
gi|222848411|gb|EEE85958.1| chromatin remodeling complex subunit [Populus trichocarpa]
Length = 630
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 171/574 (29%), Positives = 281/574 (48%), Gaps = 83/574 (14%)
Query: 36 NSRDSGFDSQTGCDPFTHAQGTVWELVPRDVR--KKMFPHQREGFEFIWKNIAGGIDLDE 93
N++D + G D F + + +P R K+M PHQ EGF F
Sbjct: 59 NAKDRDSNGTVGADLF--EEDLMVTDIPAHPRHMKQMKPHQVEGFNF------------- 103
Query: 94 LKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFK 153
L+N+ GCI++HAPG+GKT + + F+Q+++ +P + +++ P+ +L TW+ EF+
Sbjct: 104 LRNNLVADNPGGCILAHAPGSGKTFMIISFMQSFLAKYPHAKSLVVLPKGILPTWKREFQ 163
Query: 154 KWGI-DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLS 212
W I DIP Y+ + ++ V L W IL L
Sbjct: 164 IWQIEDIPLYDFYSVKADSRQQQLEV--------------------LNQWVEQKSILFLG 203
Query: 213 YRLFEKLVSGD-------ELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRII 265
Y+ F +V D ILL P + + DE HTPRN++T + ++L++++T R+++
Sbjct: 204 YKQFSSIVCDDGKNQVSVTCQEILLRRPSILILDESHTPRNENTDVLQSLAKVQTPRKVV 263
Query: 266 LSGTPFQNNFQELENTLSLVRQEF----------GEVLRTVRKSG--REISKAKHASLIS 313
LSGT +QN+ +E+ N L+LVR +F +L V G ++ A+
Sbjct: 264 LSGTLYQNHAKEVFNVLNLVRPKFLRMDTSRAIVKRILSKVNIPGARKQFKAGADAAFYD 323
Query: 314 SIGRCANHRDDEK-----LKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKR 368
+ + D K +++L E + ++ +KG L E LPGL ++L QK
Sbjct: 324 LVEQTIQKDQDFKRKVTVIRDLHEMTSKVLHYYKGDFLDE-LPGLVDFTLMLNLSSRQKH 382
Query: 369 LCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARL------KLDPEAGI 422
K ++ + + + S + +HP L SF +SA + +D G+
Sbjct: 383 EVKKLKKLAMKFKRSSVGSAVYLHPKL------NSFSKNSAITDDMMDDLLETVDVRDGV 436
Query: 423 KTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKR 480
K +F L +L L S EK+LVFSQY+ PL + + W G+E+ + G+ R
Sbjct: 437 KAKFFLNILSLCESAGEKLLVFSQYLTPLKFLERLVMKVKGWILGKEIFVISGESSSDHR 496
Query: 481 QSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQ 540
+ S+ N+ S A++ S KAC EGI+LVGASR+++LDV NP V QAI RA+R GQ
Sbjct: 497 EWSMERFNN-SMDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTCQAIGRAFRPGQ 555
Query: 541 KRVVHVYHLITSETLEWDK----LRRQA-RKVWW 569
+ V+ Y L+ +++ E + R++A K+W+
Sbjct: 556 TKKVYAYRLVAADSPEEEDHTTCFRKEAIAKMWF 589
>gi|115474249|ref|NP_001060723.1| Os07g0692600 [Oryza sativa Japonica Group]
gi|113612259|dbj|BAF22637.1| Os07g0692600, partial [Oryza sativa Japonica Group]
Length = 475
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 145/439 (33%), Positives = 237/439 (53%), Gaps = 40/439 (9%)
Query: 198 KLYSWKMGTGILGLSYRLFEKLVSGDE---------LSGILLDLPGLFVFDEGHTPRNDD 248
KL+ W +L ++Y F + D ++ +L++ PGL + DEGH PR++
Sbjct: 26 KLFKWHAHPSVLLMTYSSFLGMTKQDSKVRNRYREFIAEVLMNNPGLLILDEGHNPRSNK 85
Query: 249 TCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTV---RKSGREIS 304
+ + K L ++KT RI+LSGT FQNNF+E NTL L R F G+++ + RK
Sbjct: 86 SKLRKLLMKVKTEFRILLSGTAFQNNFEEYFNTLCLARPRFIGDIMSELVPERKRETVGR 145
Query: 305 KAKHA------SLISSIGRCA----NHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLR 354
+AKH + + +G+ H + + L + F++ +G L +LPG+
Sbjct: 146 RAKHQEAVARRAFVEKVGQKIESDNKHIRSDGISLLNKLTRGFIDSFEGAKLI-NLPGIH 204
Query: 355 HSVVILQPDEFQKRLCKAVE----GVKSF-VELNYCVSLLSVHPSLLP-----QQFFESF 404
V ++P + Q+ + V G F +E+ +++ S+HP L+ FF
Sbjct: 205 VYTVFMKPTDIQEEMLAKVTMPKLGSSRFPLEVELLITIGSIHPWLIKTTKAVSTFFSPA 264
Query: 405 DVDSAKLARLKLDPEAGIKTRFLLILLELST--NEKVLVFSQYIEPLTLIMEQLRHRFNW 462
+V K+ R K D AG K +F++ LL S+ E+VL+F + P+T +++ + F W
Sbjct: 265 EV--KKVERYKRDFAAGCKAKFVIDLLHKSSFRGERVLIFCHNVSPITFLVKLIEMVFGW 322
Query: 463 REGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGINLVGASRVVLLDV 521
R G+EVL + G Q++ R ++ N D + + ++++AST AC EGI+L GASR+V+LD
Sbjct: 323 RLGEEVLVLQGDQELPVRSDVMDKFNGDSAGKRKVLIASTTACAEGISLTGASRLVMLDS 382
Query: 522 VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGG 581
WN RQAI+RA+R GQ+R V+VY L+ S T E +K RK W S MVF
Sbjct: 383 EWNHSKTRQAIARAFRRGQERTVYVYLLVASGTWEEEKYNSNRRKAWMSKMVFLGRYVDD 442
Query: 582 NDQTTASEPLEDKILEEMA 600
+ Q ++ ++D++L+E+A
Sbjct: 443 SSQNRVTD-IDDEVLKELA 460
>gi|40253498|dbj|BAD05447.1| putative SNF2 domain/helicase domain-containing protein [Oryza
sativa Japonica Group]
gi|40253701|dbj|BAD05643.1| putative SNF2 domain/helicase domain-containing protein [Oryza
sativa Japonica Group]
Length = 769
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 164/520 (31%), Positives = 254/520 (48%), Gaps = 66/520 (12%)
Query: 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLV 122
PR K + PHQ EGF+F+ N+ T GCI+ HAPG+G+ + +
Sbjct: 231 PRHA-KNIRPHQLEGFKFLVNNLV-------------TDEPGGCILVHAPGSGEIFMLIS 276
Query: 123 FLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALM 181
F+Q +M H RP+++ P +L TW+ EF++W + DIP Y+ + +
Sbjct: 277 FIQGFMARHFTARPLVVLPEGILGTWKREFQQWQVEDIPLYDFDSIK------------A 324
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD-------ELSGILLDLPG 234
DNR + + L SW IL + + F ++V D E LL +P
Sbjct: 325 DNR--------VEQLEVLKSWSSKRSILFVGSKHFTQIVCDDRDENAVAECRDTLLMVPS 376
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294
L + DEGHTP D+T M ++ +++T ++++SGT F N+ +E+ NTL LVR F L+
Sbjct: 377 LLILDEGHTPSIDETDMLQSARKVQTPCKVVMSGTLFHNHVKEVFNTLDLVRPGF---LK 433
Query: 295 T-------VRKSGR-EISKAKHASLISSIGRCANHRDDE------KLKELKEKIAPFVNV 340
T R G+ EIS A+ + IS DD ++ L E ++
Sbjct: 434 TETFWPIVTRMMGQLEISSARSITEISESMEDTLLNDDNFTRKVNVIRSLGELTKDVLHY 493
Query: 341 HKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSL--LPQ 398
KG L E P L V L+ QK + +E ++ + + L VHP L + +
Sbjct: 494 CKGEDLNE-FPVLLDFSVFLELSPKQKDILCKLEEDHGMLKTSAVGAALYVHPCLSEISE 552
Query: 399 QFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQL 456
D L ++ G+K RF L +L L S EK++ FSQY P+ + L
Sbjct: 553 ANDVDRDDRVDSLVN-SINLGDGVKARFFLNILALANSAGEKLVAFSQYTLPMKFLERLL 611
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
W G+E+ ++G ++ Q +++ N S+ A+++ S KA EGI+LVGASR+
Sbjct: 612 VKEMGWHVGKEIFVINGDTSMEDGQLAMDQFNG-SADAKVLFGSIKAFGEGISLVGASRI 670
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
V+LDV NP V RQAI +R GQK+ V VY L+ +++ E
Sbjct: 671 VILDVHLNPSVTRQAIGSTFRPGQKKKVFVYRLVAADSPE 710
>gi|222640173|gb|EEE68305.1| hypothetical protein OsJ_26567 [Oryza sativa Japonica Group]
Length = 776
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 164/520 (31%), Positives = 254/520 (48%), Gaps = 66/520 (12%)
Query: 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLV 122
PR K + PHQ EGF+F+ N+ T GCI+ HAPG+G+ + +
Sbjct: 238 PRHA-KNIRPHQLEGFKFLVNNLV-------------TDEPGGCILVHAPGSGEIFMLIS 283
Query: 123 FLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALM 181
F+Q +M H RP+++ P +L TW+ EF++W + DIP Y+ + +
Sbjct: 284 FIQGFMARHFTARPLVVLPEGILGTWKREFQQWQVEDIPLYDFDSIK------------A 331
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD-------ELSGILLDLPG 234
DNR + + L SW IL + + F ++V D E LL +P
Sbjct: 332 DNR--------VEQLEVLKSWSSKRSILFVGSKHFTQIVCDDRDENAVAECRDTLLMVPS 383
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294
L + DEGHTP D+T M ++ +++T ++++SGT F N+ +E+ NTL LVR F L+
Sbjct: 384 LLILDEGHTPSIDETDMLQSARKVQTPCKVVMSGTLFHNHVKEVFNTLDLVRPGF---LK 440
Query: 295 T-------VRKSGR-EISKAKHASLISSIGRCANHRDDE------KLKELKEKIAPFVNV 340
T R G+ EIS A+ + IS DD ++ L E ++
Sbjct: 441 TETFWPIVTRMMGQLEISSARSITEISESMEDTLLNDDNFTRKVNVIRSLGELTKDVLHY 500
Query: 341 HKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSL--LPQ 398
KG L E P L V L+ QK + +E ++ + + L VHP L + +
Sbjct: 501 CKGEDLNE-FPVLLDFSVFLELSPKQKDILCKLEEDHGMLKTSAVGAALYVHPCLSEISE 559
Query: 399 QFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQL 456
D L ++ G+K RF L +L L S EK++ FSQY P+ + L
Sbjct: 560 ANDVDRDDRVDSLVN-SINLGDGVKARFFLNILALANSAGEKLVAFSQYTLPMKFLERLL 618
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
W G+E+ ++G ++ Q +++ N S+ A+++ S KA EGI+LVGASR+
Sbjct: 619 VKEMGWHVGKEIFVINGDTSMEDGQLAMDQFNG-SADAKVLFGSIKAFGEGISLVGASRI 677
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
V+LDV NP V RQAI +R GQK+ V VY L+ +++ E
Sbjct: 678 VILDVHLNPSVTRQAIGSTFRPGQKKKVFVYRLVAADSPE 717
>gi|302764876|ref|XP_002965859.1| hypothetical protein SELMODRAFT_84719 [Selaginella moellendorffii]
gi|300166673|gb|EFJ33279.1| hypothetical protein SELMODRAFT_84719 [Selaginella moellendorffii]
Length = 429
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 143/364 (39%), Positives = 197/364 (54%), Gaps = 23/364 (6%)
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
GDE S +L + VFDE H RND+T + +AL ++T RRI LSGT FQNN EL N
Sbjct: 18 GDE-SWLLARAADVLVFDEAHYARNDNTRIAEALKTVRTPRRIFLSGTVFQNNLDELYNL 76
Query: 282 LSLVRQEF-GEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNV 340
+L R F VL + +H R N+ ++ ++ APF++
Sbjct: 77 FTLCRPSFLTPVLERFEFDASKDDAERHFFKEMIENRLENNLG-AAVRFFRKLTAPFLHW 135
Query: 341 HKGTVLQESLPGLRHSVVILQPDEFQKRLC------KAVEGVKSFVELNYCVSLLSVHPS 394
H G VL +SLPG+ +V L E K L E K F+ + ++ VHP
Sbjct: 136 HGGKVL-DSLPGIEEVLVTLNLTEAHKALVLNAGKSYTKEKKKGFLAEDSRLARACVHPC 194
Query: 395 LLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTN--EKVLVFSQYIEPLTLI 452
+ DV+S +L + DP+AG KT F++ LL N EK+++F QY +PL L+
Sbjct: 195 F-------AVDVESPELE--QQDPKAGAKTAFVMELLRFLRNKPEKLIIFGQYRQPLELL 245
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
+ R WRE EVLYM G+ +R + N SS AR++L S KAC EGI+LVG
Sbjct: 246 KNMIMERLGWRELHEVLYMSGETATNERVRISSTFNSKSSTARVILVSIKACGEGISLVG 305
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW--DKLRRQARKVWWS 570
SRVV+LD WNP RQA+SRA+R+GQK+ V+VY L+ TLE +KLRR RK + +
Sbjct: 306 GSRVVVLDTAWNPSTVRQAVSRAFRIGQKKKVYVYRLLVGNTLEHEVEKLRRSMRKDFLA 365
Query: 571 NMVF 574
+F
Sbjct: 366 MALF 369
>gi|302802704|ref|XP_002983106.1| hypothetical protein SELMODRAFT_117561 [Selaginella moellendorffii]
gi|300149259|gb|EFJ15915.1| hypothetical protein SELMODRAFT_117561 [Selaginella moellendorffii]
Length = 429
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 142/364 (39%), Positives = 197/364 (54%), Gaps = 23/364 (6%)
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
GDE S +L + VFDE H RND+T + +AL ++T RRI LSGT FQNN EL N
Sbjct: 18 GDE-SWLLARAADVLVFDEAHYARNDNTRIAEALKTVRTPRRIFLSGTVFQNNLDELYNL 76
Query: 282 LSLVRQEF-GEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNV 340
+L R F VL + +H R N+ ++ ++ APF++
Sbjct: 77 FTLCRPSFLTPVLERFEFDASKDDAERHFFKEMIENRLENNLG-AAVRFFRKLTAPFLHW 135
Query: 341 HKGTVLQESLPGLRHSVVILQPDEFQKRLC------KAVEGVKSFVELNYCVSLLSVHPS 394
H G VL +SLPG+ +V L E K L E + F+ + ++ VHP
Sbjct: 136 HGGKVL-DSLPGIEEVLVTLNLTEAHKALVLNAGKSYTKEKKRGFLAEDSRLARACVHPC 194
Query: 395 LLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTN--EKVLVFSQYIEPLTLI 452
+ DV+S +L + DP+AG KT F++ LL N EK+++F QY +PL L+
Sbjct: 195 F-------AVDVESPQLE--QQDPKAGAKTAFVMELLRFLRNKPEKLIIFGQYRQPLELL 245
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
+ R WRE EVLYM G+ +R + N SS AR++L S KAC EGI+LVG
Sbjct: 246 KNMIMERLGWRELHEVLYMSGETATNERVRISSTFNSKSSTARVILVSIKACGEGISLVG 305
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW--DKLRRQARKVWWS 570
SRVV+LD WNP RQA+SRA+R+GQK+ V+VY L+ TLE +KLRR RK + +
Sbjct: 306 GSRVVVLDTAWNPSTVRQAVSRAFRIGQKKKVYVYRLLVGNTLEHEVEKLRRSMRKDFLA 365
Query: 571 NMVF 574
+F
Sbjct: 366 MALF 369
>gi|218200743|gb|EEC83170.1| hypothetical protein OsI_28396 [Oryza sativa Indica Group]
Length = 848
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 160/519 (30%), Positives = 255/519 (49%), Gaps = 64/519 (12%)
Query: 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLV 122
PR K + PHQ EGF+F+ N+ T GCI+ HAPG+GK + +
Sbjct: 248 PRHA-KNIRPHQLEGFKFLINNLV-------------TDEPGGCILVHAPGSGKIFMLIT 293
Query: 123 FLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALM 181
F+Q++M H R +++ P +L TW+ EF++W + DIP Y+ +
Sbjct: 294 FIQSFMARHSTARSLVVLPEGILGTWKMEFQQWQVEDIPLYDFDSI-------------- 339
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD-------ELSGILLDLPG 234
+ +V + +K +S K IL + + F ++V D E +LL +P
Sbjct: 340 ----KADERVEQLEVLKFWSSK--RSILFVGSKHFTQIVCDDRDENAVAECRDMLLMVPS 393
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294
L + DEGHTP +T M ++ +++T ++++SGT F N+ +E+ NTL LVR F L+
Sbjct: 394 LLIIDEGHTPSIHETDMLQSARKVQTPCKVVMSGTLFHNHVKEVLNTLDLVRPGF---LK 450
Query: 295 T-------VRKSGR-EISKAKHASLISSIGRCANHRDDE------KLKELKEKIAPFVNV 340
T R G+ EIS A+ + IS DD ++ L E ++
Sbjct: 451 TETSWPIVTRMMGQLEISSARSITEISESVEDTLLNDDNFTRKVNVIRSLGELTKDVLHY 510
Query: 341 HKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQF 400
KG L E PGL V L+ QK + +E ++ + + L VHP L
Sbjct: 511 CKGEDLNE-FPGLLDFSVFLELSPKQKDILCKLEEDHEMLKTSAVGAALYVHPCLSEISE 569
Query: 401 FESFDVDSAKLARLK-LDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQLR 457
+ D D + + ++ G+K RF L +L L S EK++ FSQY P+ + L
Sbjct: 570 ANAVDRDDRVDSLVNSINLGDGVKARFFLNILALANSAGEKLVAFSQYTLPMKFLERLLV 629
Query: 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
W G+E+ ++G ++ Q +++ N S+ A+++ S KA EGI+LVGASR+V
Sbjct: 630 KEMGWYVGKEIFVINGDTSMEDGQLAMDQFNG-SADAKVLFGSIKAFGEGISLVGASRIV 688
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
+LD+ N V RQAI +R GQK+ V VY L+ +++ E
Sbjct: 689 ILDIHLNLSVTRQAIGSTFRPGQKKKVFVYRLVAADSPE 727
>gi|297821869|ref|XP_002878817.1| hypothetical protein ARALYDRAFT_344097 [Arabidopsis lyrata subsp.
lyrata]
gi|297324656|gb|EFH55076.1| hypothetical protein ARALYDRAFT_344097 [Arabidopsis lyrata subsp.
lyrata]
Length = 786
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 161/548 (29%), Positives = 258/548 (47%), Gaps = 84/548 (15%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMK 129
M PH E F+ KN+ ++NS NGCII+ P + KT L + F+ Y++
Sbjct: 217 MKPHHYEILNFLCKNLV-------VENS------NGCIIAQIPLSEKTFLMINFIYGYLE 263
Query: 130 LHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRG 189
HP +P+ + P+ ML W+++F + + N V L +
Sbjct: 264 KHPNSKPLFVLPKWMLNFWKKDFGELKV-----------------NDLVLLDFYSAKAHT 306
Query: 190 KVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS-------GDELSGILLDLPGLFVFDEGH 242
+ + +K W I+ L + F +VS D ILL++P L VFD G
Sbjct: 307 RYQQLEVLK--QWITNRSIIFLGTKQFSNIVSDNSGTEASDSCREILLNIPSLVVFDRGT 364
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
PRN+ KA++RIKT R+++L+GT +QNN +E+ N L + F E L+ + G+
Sbjct: 365 DPRNEMMSFLKAVARIKTPRKVLLTGTLYQNNIKEVFNILDVA---FPEFLKH-NQIGKN 420
Query: 303 ISKAKHAS-------------LISSIGRCANHRDDEK------LKELKEKIAPFVNVHKG 343
ISK + L + +D + L EL+ + +KG
Sbjct: 421 ISKFLNVEADVDGPSTNLKMPLFDKLEEALLSQDSDHGDKIGYLTELRMLTNKVIYNYKG 480
Query: 344 TVLQESLPGLRHSVVILQP-----DEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLP- 397
L + LPGL V+L P E++ +G K++ L S +++HP L
Sbjct: 481 ECLLD-LPGLLDFTVVLNPTLSQKSEWETERNSKGKGFKTYSTL----SGITLHPLLRAF 535
Query: 398 ---QQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLI 452
+ + + D ++D G+KT F + L++L TNEK+LV SQY+ PL +
Sbjct: 536 SNRAKGLPAPNEDEMDEIIKEIDVTDGVKTNFFMGLVKLCDYTNEKILVVSQYVIPLIFL 595
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
+ W++G+E + G + R+ SIN N+ S+ A+I S KAC E I L G
Sbjct: 596 QRLVAKIKGWKDGKETFMIKGDTSLSAREMSINQFNN-SNDAKIFFVSIKACNEQIGLTG 654
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK-----V 567
A+RV++LD++ NP + RQAI AY GQ+ V+ Y L+ ++T E D+ A+K +
Sbjct: 655 ATRVLMLDIIANPCMARQAIELAYHPGQQNKVYSYRLVAADTSEEDEEIIAAKKEIISGI 714
Query: 568 WWSNMVFP 575
W+ +P
Sbjct: 715 WFDGKTYP 722
>gi|224109244|ref|XP_002315134.1| chromatin remodeling complex subunit [Populus trichocarpa]
gi|222864174|gb|EEF01305.1| chromatin remodeling complex subunit [Populus trichocarpa]
Length = 439
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 139/437 (31%), Positives = 231/437 (52%), Gaps = 41/437 (9%)
Query: 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP 132
H+++ FE +W+NIAG + ++ ++ GG C+ISH PG GKT L + FL +Y+KL P
Sbjct: 2 HRKKAFECLWRNIAGSLVPALMEKASKKIGG--CVISHTPGAGKTFLKIAFLVSYLKLFP 59
Query: 133 RCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVG 192
RP+++AP++ L TW +EF KW I +P ++ S VAL + R V
Sbjct: 60 GKRPLVLAPKTTLYTWYKEFIKWEIPVPVLLIHGTRSSRVFRQTPVALRGSCPRPSQDVV 119
Query: 193 LIRYV--KLYSWKMGTGILGLSYRLFEKLVSGDE-------LSGILLDLPGLFVFDEGHT 243
I K+ W +L + Y F L+ D ++ +L + PG+ V DEGH
Sbjct: 120 HILDCLEKMQKWHAQPSVLVMGYTSFLTLMREDSKYNRRKYMAKVLRESPGMLVLDEGHN 179
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTV----RK 298
PR+ + + K L +++T RI+LSGT FQNNF E NTL L R F EVL+ + ++
Sbjct: 180 PRSTKSRLRKVLMKVETDLRILLSGTLFQNNFCEYFNTLCLARPLFIREVLKALDPKFKR 239
Query: 299 SGREISKAKH-------ASLISSIGRCANHRDDEK----LKELKEKIAPFVNVHKGTVLQ 347
+ KA+H I +I N + E+ L L+ F++V++GT
Sbjct: 240 KKKGAQKARHFLESRARKFFIDNIASKINLDEAEEKMQGLNMLRNMTNGFIDVYEGTA-S 298
Query: 348 ESLPGLRHSVVILQPDEFQK----RLCKAVEGVKSF-VELNYCVSLLSVHPSLL-----P 397
++LPGL+ +++ P + Q +L K +E + +E+ ++L S+HPS++
Sbjct: 299 DTLPGLQIYTIMINPTDIQHEILVKLHKIMEKCPGYPLEVELLITLASIHPSIINSSVCV 358
Query: 398 QQFFESFDVDSAKLARLKLDPEAGIKTRFLL-ILLELSTNEKVLVFSQYIEPLTLIMEQL 456
++F+E ++ +L +L+ D + G K F+L ++ + +KVL+F I P+ L +E
Sbjct: 359 KKFYEQEEL--MELEKLRFDCKKGSKVMFVLNLVYRVVKKDKVLIFCHNIAPIKLFLELF 416
Query: 457 RHRFNWREGQEVLYMDG 473
+ F W+ G+EVL + G
Sbjct: 417 ENVFRWQLGKEVLVLTG 433
>gi|157130680|ref|XP_001661961.1| steroid receptor-interacting snf2 domain protein [Aedes aegypti]
gi|108881922|gb|EAT46147.1| AAEL002647-PA [Aedes aegypti]
Length = 791
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 155/546 (28%), Positives = 251/546 (45%), Gaps = 83/546 (15%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G GCI++ G GKT + L ++
Sbjct: 142 PHQREGVRFMYECVTG-----------KRGDFQGCIMADEMGLGKTLQCITLLWTLLRQS 190
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P VI+ P S++ W +EF KW L + N A+ D +
Sbjct: 191 PDCKPTINKAVIVCPSSLVKNWYKEFGKW-------------LGCRVNCLAI---DGGSK 234
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDEGHT 243
L +++ S + GT +L +SY RL+ +++ E+ +L D EGH
Sbjct: 235 EHTTKELEQFMANQSMRHGTPVLIISYETFRLYSHILNNSEVGAVLCD--------EGHR 286
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV------------RQEFGE 291
+N + ++AL +KT+RR++LSGTP QN+ E + L V RQ
Sbjct: 287 LKNCENLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLLHFVNPGMLGSTNEFRRQFENP 346
Query: 292 VLR----TVRKSGREISKAKHASLISSIGRCANHRDDEKL-KELKEKIAPFVNVHKGTVL 346
+LR +S R+ + + L + + RC R L K L K V V K T +
Sbjct: 347 ILRGQDANATESERQKATERLQELTAQVNRCMIRRTSALLTKYLPIKFEMVVCV-KMTEI 405
Query: 347 QESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSL--LSVHPSLLPQQFFESF 404
Q L LQ D ++ + + + S L+ SL L HP L+ ++ E
Sbjct: 406 QTEL-----YKSFLQSDSIRRSMLEKAQVKASLTALSNITSLKKLCNHPDLVYEKIQERA 460
Query: 405 D-------VDSAKLARLKLDPEAGIKTRFLLILL---ELSTNEKVLVFSQYIEPLTLIME 454
D + + + +L PE G K L +L +++T++K+++ S Y + L L +
Sbjct: 461 DGFENAHKILPSNYSSKELRPEFGGKLMVLDCMLASIKMNTDDKIVLVSNYTQTLDLFEK 520
Query: 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGAS 514
R R G + +DG +KKR ++ N P S+ I + S+KA G+NL+GA+
Sbjct: 521 LCRKR-----GYCYVRLDGSMTIKKRGKVVDEFNKPDSKEFIFMLSSKAGGCGLNLIGAN 575
Query: 515 RVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVF 574
R+V+ D WNP + QA++R +R GQK+ +Y L+ + T+E +RQ K SN V
Sbjct: 576 RLVMFDPDWNPANDEQAMARVWRDGQKKPCFIYRLLATGTIEEKIFQRQTHKKALSNTVV 635
Query: 575 PSSDGG 580
+ + G
Sbjct: 636 DNDEDG 641
>gi|170041242|ref|XP_001848380.1| DNA repair and recombination protein RAD54 [Culex quinquefasciatus]
gi|167864826|gb|EDS28209.1| DNA repair and recombination protein RAD54 [Culex quinquefasciatus]
Length = 787
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 153/546 (28%), Positives = 251/546 (45%), Gaps = 83/546 (15%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G GCI++ G GKT + L ++
Sbjct: 141 PHQREGVRFMYECVTG-----------KRGDFQGCIMADEMGLGKTLQCITLLWTLLRQS 189
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P VI+ P S++ W +EF KW L + N ++ D +
Sbjct: 190 PDCKPEINKAVIVCPSSLVKNWYKEFGKW-------------LGCRVNCLSI---DGGSK 233
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDEGHT 243
+ L +++ S + GT +L +SY RL+ +++ E+ +L D EGH
Sbjct: 234 EQTTKQLEQFMANQSARQGTPVLIISYETFRLYAGILNNSEVGAVLCD--------EGHR 285
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV------------RQEFGE 291
+N + ++AL +KT+RR++LSGTP QN+ E + L V RQ
Sbjct: 286 LKNCENLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLLHFVNPGMLGSSNEFRRQFENP 345
Query: 292 VLR----TVRKSGREISKAKHASLISSIGRCANHRDDEKL-KELKEKIAPFVNVHKGTVL 346
+LR +S RE + + L + + RC R L K L K V V V
Sbjct: 346 ILRGQDANSTESEREKATERLQELSALVNRCMIRRTSSLLTKYLPIKFEMVVCVKMTDVQ 405
Query: 347 QESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSL--LSVHPSLLPQQ----- 399
E LQ D ++ + + E S L+ +L L HP L+ ++
Sbjct: 406 TELYKSF------LQSDSIRRSVLEKSEVKASLTALSNITALKKLCNHPDLVYEKIKERA 459
Query: 400 --FFESFDVDSAKLARLKLDPEAGIKTRFLLILL---ELSTNEKVLVFSQYIEPLTLIME 454
F E++ + A + ++ PE G K L +L +++TN+K+++ S Y + L L +
Sbjct: 460 EGFEEAYKILPANYSAKEVRPEFGGKLMVLDCMLASIKMNTNDKIVLVSNYTQTLDLFEK 519
Query: 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGAS 514
R R G + +DG +KKR ++ N P S+ I + S+KA G+NL+GA+
Sbjct: 520 LCRKR-----GYGYVRLDGTMTIKKRGKVVDEFNKPDSKEFIFMLSSKAGGCGLNLIGAN 574
Query: 515 RVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVF 574
R+V+ D WNP + QA++R +R GQK+ +Y L+ + ++E +RQ K SN V
Sbjct: 575 RLVMFDPDWNPANDEQAMARVWRDGQKKPCFIYRLLATGSIEEKIFQRQTHKKALSNTVV 634
Query: 575 PSSDGG 580
+ + G
Sbjct: 635 DNDEDG 640
>gi|194855241|ref|XP_001968502.1| GG24469 [Drosophila erecta]
gi|292630862|sp|B3NAN8.1|RAD54_DROER RecName: Full=DNA repair and recombination protein RAD54-like;
AltName: Full=Protein okra
gi|190660369|gb|EDV57561.1| GG24469 [Drosophila erecta]
Length = 784
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 147/548 (26%), Positives = 257/548 (46%), Gaps = 89/548 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + + ++
Sbjct: 158 PHQREGVRFMYECVEG-----------KRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQG 206
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P ++++P S++ WE+EF KW L G+ L+
Sbjct: 207 PECKPTINKAIVVSPSSLVKNWEKEFTKW-------------LQGR-------LLCLPME 246
Query: 187 GRGKVGLIRYVKLYSW---KMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDE 240
G K IR ++ +S ++GT +L +SY R++ +++ E+ G+ + DE
Sbjct: 247 GGTKENTIRALEQFSMTSSRLGTPVLLISYETFRIYAEILCKYEV--------GMVICDE 298
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF----------- 289
GH +N D ++AL +KT+RR++LSGTP QN+ E + ++ V E
Sbjct: 299 GHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNF 358
Query: 290 -GEVLR----TVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGT 344
+LR + R+ + AK LI + +C R ++ L + V K T
Sbjct: 359 ESAILRGQNTDSTDAERQRAIAKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVICAKLT 418
Query: 345 VLQESLPGLRHSVVILQPDEFQKRL--CKAVEGVKSFVELNYCVSLLSVHPSLLPQQ--- 399
+Q L L+ D+ ++ L CK + + ++ + S HP+L+ ++
Sbjct: 419 SIQ-----LELYTNFLKSDQVRRSLADCKEKASLTALADITTLKKICS-HPNLIYEKITA 472
Query: 400 ----FFESFDVDSAKLARLKLDPEAGIK---TRFLLILLELSTNEKVLVFSQYIEPLTLI 452
F S +V + L+PE K F+L + N+KV++ S Y + L L
Sbjct: 473 RDKGFENSQNVLPSNYNAKDLNPELSGKFMLLDFMLAAIRADGNDKVVLISNYTQTLDLF 532
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
EQL + + + +DG +KKR ++ NDP S + + + S+KA G+NL+G
Sbjct: 533 -EQLARKRKY----GFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIG 587
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNM 572
A+R+ + D WNP + QA++R +R GQK+ ++Y L+ S ++E L+RQ K S+
Sbjct: 588 ANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSST 647
Query: 573 VFPSSDGG 580
+ +++
Sbjct: 648 IIDNNESA 655
>gi|297744768|emb|CBI38030.3| unnamed protein product [Vitis vinifera]
Length = 856
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 137/402 (34%), Positives = 203/402 (50%), Gaps = 55/402 (13%)
Query: 199 LYSWKMGTGILGLSYRLFEKLVSGDELSG-------ILLDLPGLFVFDEGHTPRNDDTCM 251
L W IL L Y+ F +V GD S ILL P + + DEGHTPRN++T +
Sbjct: 437 LKQWVAEKSILFLGYKQFSSIVCGDGASKATIACQEILLKAPQILILDEGHTPRNENTDV 496
Query: 252 FKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-------GEVLRTVRKSG---- 300
+L++++T R+++LSGT +QN+ +E+ N L+LVR +F V R + K
Sbjct: 497 LYSLAKVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKLESSRAVVKRIMSKVDIMGV 556
Query: 301 REISKAKHASLISSIGRCANHRDDE------KLKELKEKIAPFVNVHKGTVLQESLPGLR 354
R+ K+ A + +DD +++L+E + ++ +KG L E LPGL
Sbjct: 557 RKQLKSNAADAFYDLVENTLQKDDNFRRKITVIQDLREMTSKVLHYYKGDFLDE-LPGLV 615
Query: 355 HSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARL 414
V+L QK K LN +F F +S
Sbjct: 616 DFTVLLNLSARQK---------KEVGNLN---------------KFERKFKKNSVGK--- 648
Query: 415 KLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMD 472
+LD G+K +F L +L L S+ EK+LVFSQY+ PL + + W G+E+ +
Sbjct: 649 QLDVRDGVKAKFFLNVLALCQSSGEKLLVFSQYLLPLRFLEKLTMKVKGWSPGKEIFAIS 708
Query: 473 GKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAI 532
G+ ++R+ S+ N S AR+ S KAC EGI+LVGASRV++LDV NP V RQAI
Sbjct: 709 GESSSEQREWSMERFN-TSPDARVFFGSIKACGEGISLVGASRVLILDVHLNPSVTRQAI 767
Query: 533 SRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVF 574
RA+R GQK+ VHVY L+ +++ E + +K S M F
Sbjct: 768 GRAFRPGQKKKVHVYKLVAADSPEEEDHNSCFKKELISKMWF 809
>gi|167527295|ref|XP_001747980.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773729|gb|EDQ87367.1| predicted protein [Monosiga brevicollis MX1]
Length = 760
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 157/545 (28%), Positives = 239/545 (43%), Gaps = 82/545 (15%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM 128
K+ PHQ EG +F++ + G G +G I++ G GKT + +
Sbjct: 154 KLRPHQIEGVQFLYDCVTG----------LKIPGYHGAIMADGMGLGKTLQNVTLTWTLL 203
Query: 129 KLHPRCRP-----VIIAPRSMLLTWEEEFKKWGID----IPFYNLNKPELSGKENNGAVA 179
K P CRP VI+ P S++ W EF+KW D +P +NGA
Sbjct: 204 KQSPECRPTLTKAVIVCPSSLVKNWSNEFRKWLGDRVSTLPI------------DNGASD 251
Query: 180 LMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVF 238
+D + +RY S + +L +SY + LD P G+ +
Sbjct: 252 EIDKK---------LRYFGSASGRAAPQVLIISYETLRGHIHA-------LDQPVGIVIC 295
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-----------RQ 287
DEGH +N + ++AL +KT RR+ILSGTP QN E L V R+
Sbjct: 296 DEGHRLKNSENQTYRALMALKTERRVILSGTPVQNELLEYYALLEFVNPGLLGSAGEFRK 355
Query: 288 EFG-EVLR----TVRKSGREISKAKHASLISSIGRCANHRDDEKL-KELKEKIAPFVNVH 341
+F +LR +E+ + K ++ + RC R + L K L KI V
Sbjct: 356 KFEIPILRGRDADATAQEQELGQTKLNEMVELVNRCLIRRTSDILSKYLPPKIEAVVCCR 415
Query: 342 KGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSL--LSVHPSLLPQQ 399
+ + L S I D+ + + G L + L L HP L+ +
Sbjct: 416 LTGLQLDMYKRLIDSQAIALEDDGPGKTNQKKSGGSGPTPLAFITHLKKLCNHPELIMDK 475
Query: 400 -------FFESFDVDSAKLARLKLDPEAGIKTRF---LLILLELSTNEKVLVFSQYIEPL 449
F + D+ AK + PE K +L +L+ +T+EKV++ S Y + L
Sbjct: 476 IQAREPGFAKLQDLVPAKWDSRVVSPEWSGKVMVVDAMLAMLKSTTDEKVVLISNYTQTL 535
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509
L R R + + +DG +KKRQ ++ N P S I + S+KA GIN
Sbjct: 536 DLFERLCRQRR-----YKYVRLDGTMSIKKRQKVVDHFNAPDSDDFIFMLSSKAGGCGIN 590
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
L+GASR++L D WNP + QA++R +R GQ+R+ +VY L+ + T+E L RQA K
Sbjct: 591 LIGASRLILTDPDWNPASDAQALARCWRDGQRRITYVYRLVATGTIEEKILARQAHKTAL 650
Query: 570 SNMVF 574
S+ V
Sbjct: 651 SDCVI 655
>gi|3329473|gb|AAC26857.1| RAD54 DNA repair protein [Drosophila melanogaster]
Length = 628
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 147/550 (26%), Positives = 256/550 (46%), Gaps = 93/550 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + + ++
Sbjct: 2 PHQREGVRFMYECVEG-----------KRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQG 50
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P ++++P S++ WE+EF KW L G+ L+
Sbjct: 51 PECKPTINKAIVVSPSSLVKNWEKEFTKW-------------LHGR-------LLCLPME 90
Query: 187 GRGKVGLIRYVKLYSW---KMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDE 240
G K IR ++ +S ++GT +L +SY R++ +++ E+ G+ + DE
Sbjct: 91 GGTKENTIRALEQFSMTSARLGTPVLLISYETFRIYAEILCKYEV--------GMVICDE 142
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF----------- 289
GH +N D ++AL +KT+RR++LSGTP QN+ E + ++ V E
Sbjct: 143 GHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNF 202
Query: 290 -GEVLR------TVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHK 342
+LR T ++ R I K + LI + +C R ++ L + V K
Sbjct: 203 ESAILRGQNTDSTEQERQRAIEKTQE--LIGLVDQCIIRRTNQILTKYLPVKFEMVICAK 260
Query: 343 GTVLQESLPGLRHSVVILQPDEFQKRL--CKAVEGVKSFVELNYCVSLLSVHPSLLPQQ- 399
T +Q L L+ D+ ++ L C + + ++ + S HP L+ ++
Sbjct: 261 LTAIQ-----LELYTNFLKSDQVRRSLADCNEKASLTALADITTLKKICS-HPDLIYEKL 314
Query: 400 ------FFESFDVDSAKLARLKLDPEAGIK---TRFLLILLELSTNEKVLVFSQYIEPLT 450
F S +V + L+PE K F+L + N+KV++ S Y + L
Sbjct: 315 TAREKGFENSQNVLPSNYKPKDLNPELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLD 374
Query: 451 LIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINL 510
L + R R + G + +DG +KKR ++ NDP S + + + S+KA G+NL
Sbjct: 375 LFEQLARKR---KYG--FVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNL 429
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS 570
+GA+R+ + D WNP + QA++R +R GQK+ ++Y L+ S ++E L+RQ K S
Sbjct: 430 IGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLS 489
Query: 571 NMVFPSSDGG 580
+ + +++
Sbjct: 490 STIIDNNESA 499
>gi|1765914|emb|CAA71278.1| RAD54 [Drosophila melanogaster]
Length = 784
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 147/550 (26%), Positives = 256/550 (46%), Gaps = 93/550 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + + ++
Sbjct: 158 PHQREGVRFMYECVEG-----------KRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQG 206
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P ++++P S++ WE+EF KW L G+ L+
Sbjct: 207 PECKPTINKAIVVSPSSLVKNWEKEFTKW-------------LHGR-------LLCLPME 246
Query: 187 GRGKVGLIRYVKLYSW---KMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDE 240
G K IR ++ +S ++GT +L +SY R++ +++ E+ G+ + DE
Sbjct: 247 GGTKENTIRALEQFSMTSARLGTPVLLISYETFRIYAEILCKYEV--------GMVICDE 298
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF----------- 289
GH +N D ++AL +KT+RR++LSGTP QN+ E + ++ V E
Sbjct: 299 GHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNF 358
Query: 290 -GEVLR------TVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHK 342
+LR T ++ R I K + LI + +C R ++ L + V K
Sbjct: 359 ESAILRGQNTDSTEQERQRAIEKTQE--LIGLVDQCIIRRTNQILTKYLPVKFEMVICAK 416
Query: 343 GTVLQESLPGLRHSVVILQPDEFQKRL--CKAVEGVKSFVELNYCVSLLSVHPSLLPQQ- 399
T +Q L L+ D+ ++ L C + + ++ + S HP L+ ++
Sbjct: 417 LTAIQ-----LELYTNFLKSDQVRRSLADCNEKASLTALADITTLKKICS-HPDLIYEKL 470
Query: 400 ------FFESFDVDSAKLARLKLDPEAGIK---TRFLLILLELSTNEKVLVFSQYIEPLT 450
F S +V + L+PE K F+L + N+KV++ S Y + L
Sbjct: 471 TAREKGFENSQNVLPSNYKPKDLNPELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLD 530
Query: 451 LIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINL 510
L EQL + + + +DG +KKR ++ NDP S + + + S+KA G+NL
Sbjct: 531 LF-EQLARKRKY----GFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNL 585
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS 570
+GA+R+ + D WNP + QA++R +R GQK+ ++Y L+ S ++E L+RQ K S
Sbjct: 586 IGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLS 645
Query: 571 NMVFPSSDGG 580
+ + +++
Sbjct: 646 STIIDNNESA 655
>gi|27819922|gb|AAL39744.2| LD35220p, partial [Drosophila melanogaster]
Length = 788
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 147/550 (26%), Positives = 256/550 (46%), Gaps = 93/550 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + + ++
Sbjct: 162 PHQREGVRFMYECVEG-----------KRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQG 210
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P ++++P S++ WE+EF KW L G+ L+
Sbjct: 211 PECKPTINKAIVVSPSSLVKNWEKEFTKW-------------LHGR-------LLCLPME 250
Query: 187 GRGKVGLIRYVKLYSW---KMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDE 240
G K IR ++ +S ++GT +L +SY R++ +++ E+ G+ + DE
Sbjct: 251 GGTKENTIRALEQFSMTSARLGTPVLLISYETFRIYAEILCKYEV--------GMVICDE 302
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF----------- 289
GH +N D ++AL +KT+RR++LSGTP QN+ E + ++ V E
Sbjct: 303 GHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNF 362
Query: 290 -GEVLR------TVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHK 342
+LR T ++ R I K + LI + +C R ++ L + V K
Sbjct: 363 ESAILRGQNTDSTEQERQRAIEKTQE--LIGLVDQCIIRRTNQILTKYLPVKFEMVICAK 420
Query: 343 GTVLQESLPGLRHSVVILQPDEFQKRL--CKAVEGVKSFVELNYCVSLLSVHPSLLPQQ- 399
T +Q L L+ D+ ++ L C + + ++ + S HP L+ ++
Sbjct: 421 LTAIQ-----LELYTNFLKSDQVRRSLADCNEKASLTALADITTLKKICS-HPDLIYEKL 474
Query: 400 ------FFESFDVDSAKLARLKLDPEAGIK---TRFLLILLELSTNEKVLVFSQYIEPLT 450
F S +V + L+PE K F+L + N+KV++ S Y + L
Sbjct: 475 TAREKGFENSQNVLPSNYKPKDLNPELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLD 534
Query: 451 LIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINL 510
L EQL + + + +DG +KKR ++ NDP S + + + S+KA G+NL
Sbjct: 535 LF-EQLARKRKY----GFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNL 589
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS 570
+GA+R+ + D WNP + QA++R +R GQK+ ++Y L+ S ++E L+RQ K S
Sbjct: 590 IGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLS 649
Query: 571 NMVFPSSDGG 580
+ + +++
Sbjct: 650 STIIDNNESA 659
>gi|17136368|ref|NP_476661.1| okra [Drosophila melanogaster]
gi|74960637|sp|O76460.1|RAD54_DROME RecName: Full=DNA repair and recombination protein RAD54-like;
Short=DmRAD54; AltName: Full=Protein okra; AltName:
Full=RAD54 DNA repair protein
gi|3264618|gb|AAC24577.1| Rad54 homolog OKR [Drosophila melanogaster]
gi|7295868|gb|AAF51168.1| okra [Drosophila melanogaster]
gi|220947310|gb|ACL86198.1| okr-PA [synthetic construct]
gi|220956782|gb|ACL90934.1| okr-PA [synthetic construct]
Length = 784
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 147/550 (26%), Positives = 256/550 (46%), Gaps = 93/550 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + + ++
Sbjct: 158 PHQREGVRFMYECVEG-----------KRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQG 206
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P ++++P S++ WE+EF KW L G+ L+
Sbjct: 207 PECKPTINKAIVVSPSSLVKNWEKEFTKW-------------LHGR-------LLCLPME 246
Query: 187 GRGKVGLIRYVKLYSW---KMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDE 240
G K IR ++ +S ++GT +L +SY R++ +++ E+ G+ + DE
Sbjct: 247 GGTKENTIRALEQFSMTSARLGTPVLLISYETFRIYAEILCKYEV--------GMVICDE 298
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF----------- 289
GH +N D ++AL +KT+RR++LSGTP QN+ E + ++ V E
Sbjct: 299 GHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNF 358
Query: 290 -GEVLR------TVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHK 342
+LR T ++ R I K + LI + +C R ++ L + V K
Sbjct: 359 ESAILRGQNTDSTEQERQRAIEKTQE--LIGLVDQCIIRRTNQILTKYLPVKFEMVICAK 416
Query: 343 GTVLQESLPGLRHSVVILQPDEFQKRL--CKAVEGVKSFVELNYCVSLLSVHPSLLPQQ- 399
T +Q L L+ D+ ++ L C + + ++ + S HP L+ ++
Sbjct: 417 LTAIQ-----LELYTNFLKSDQVRRSLADCNEKASLTALADITTLKKICS-HPDLIYEKL 470
Query: 400 ------FFESFDVDSAKLARLKLDPEAGIK---TRFLLILLELSTNEKVLVFSQYIEPLT 450
F S +V + L+PE K F+L + N+KV++ S Y + L
Sbjct: 471 TAREKGFENSQNVLPSNYKPKDLNPELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLD 530
Query: 451 LIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINL 510
L EQL + + + +DG +KKR ++ NDP S + + + S+KA G+NL
Sbjct: 531 LF-EQLARKRKY----GFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNL 585
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS 570
+GA+R+ + D WNP + QA++R +R GQK+ ++Y L+ S ++E L+RQ K S
Sbjct: 586 IGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLS 645
Query: 571 NMVFPSSDGG 580
+ + +++
Sbjct: 646 STIIDNNESA 655
>gi|158293531|ref|XP_557901.3| AGAP008748-PA [Anopheles gambiae str. PEST]
gi|157016752|gb|EAL40287.3| AGAP008748-PA [Anopheles gambiae str. PEST]
Length = 789
Score = 182 bits (461), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 153/546 (28%), Positives = 248/546 (45%), Gaps = 83/546 (15%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F++ + G + G NGCI++ G GKT + L ++
Sbjct: 142 PHQREGVRFMYDCVTG-----------AKGDFNGCIMADEMGLGKTLQCITLLWTLLRQS 190
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P +I+ P S++ W +EF KW L + N ++ D +
Sbjct: 191 PDCKPTINKAIIVCPSSLVKNWYKEFGKW-------------LGCRVNCLSI---DGGSK 234
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDEGHT 243
+ L +Y+ S + GT +L +SY RL+ +++ E+ +L D EGH
Sbjct: 235 EQTTKELEQYMANQSQRHGTPVLIISYETFRLYAHILNSSEVGAVLCD--------EGHR 286
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-----------RQEF-GE 291
+N + ++AL +KT+RR++LSGTP QN+ E + L V R++F
Sbjct: 287 LKNCENLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLLHFVNPGMLGSTAEFRKQFENP 346
Query: 292 VLRTVRKSGREISKAKHAS----LISSIGRCANHRDDEKL-KELKEKIAPFVNVHKGTVL 346
+LR + + + K A L + + RC R L K L K V V +
Sbjct: 347 ILRGQDANSTDAEREKAAERLQELAALVNRCMIRRTSALLTKYLPVKFEMVVCVR----M 402
Query: 347 QESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSL--LSVHPSLLPQQFFESF 404
E L S LQ D ++ + + S L+ SL L HP L+ ++ E
Sbjct: 403 TEVQAALYKS--FLQSDTIRRSVMEKNATKASLTALSNITSLKKLCNHPDLVYEKIQERA 460
Query: 405 D-------VDSAKLARLKLDPEAGIKTRFLLILL---ELSTNEKVLVFSQYIEPLTLIME 454
D + + +L PE G K L +L + +T +K+++ S Y + L L +
Sbjct: 461 DGFENAATILPDNYSPRELRPELGAKLMLLDCMLASIKTNTTDKIVLVSNYTQTLDLFEK 520
Query: 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGAS 514
R R G + +DG +KKR ++ N P S I + S+KA G+NL+GA+
Sbjct: 521 LCRKR-----GYGYVRLDGTMTIKKRGKVVDQFNQPDSADFIFMLSSKAGGCGLNLIGAN 575
Query: 515 RVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVF 574
R+V+ D WNP + QA++R +R GQK+ +Y L+ + T+E +RQ K S V
Sbjct: 576 RLVMFDPDWNPANDEQAMARVWRDGQKKPCFIYRLLATGTIEEKIFQRQTHKKALSTTVV 635
Query: 575 PSSDGG 580
+++ G
Sbjct: 636 DNAEDG 641
>gi|292630953|sp|B4NXB8.2|RAD54_DROYA RecName: Full=DNA repair and recombination protein RAD54-like;
AltName: Full=Protein okra
Length = 784
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 146/548 (26%), Positives = 255/548 (46%), Gaps = 89/548 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + + ++
Sbjct: 158 PHQREGVRFMYECVEG-----------KRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQG 206
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P ++++P S++ WE+EF KW L G+ L+
Sbjct: 207 PECKPTINKAIVVSPSSLVKNWEKEFTKW-------------LQGR-------LLCLPME 246
Query: 187 GRGKVGLIRYVKLYSW---KMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDE 240
G K IR ++ +S ++GT +L +SY R++ +++ E+ G+ + DE
Sbjct: 247 GGTKENTIRALEQFSMTSSRLGTPVLLISYETFRIYAEILCKYEV--------GMVICDE 298
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF----------- 289
GH +N D ++AL +KT+RR++LSGTP QN+ E + ++ V E
Sbjct: 299 GHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNF 358
Query: 290 -GEVLR---TVRKSG-REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGT 344
+LR T G R+ + K LI + +C R ++ L + V K T
Sbjct: 359 ESAILRGQNTDSTEGERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVICAKLT 418
Query: 345 VLQESLPGLRHSVVILQPDEFQKRL--CKAVEGVKSFVELNYCVSLLSVHPSLLPQQ--- 399
+Q L L+ D+ ++ L C + + ++ + S HP L+ ++
Sbjct: 419 SIQ-----LELYTNFLKSDQVRRSLADCNEKASLTALADITTLKKICS-HPDLIYEKITA 472
Query: 400 ----FFESFDVDSAKLARLKLDPEAGIK---TRFLLILLELSTNEKVLVFSQYIEPLTLI 452
F S +V + L+PE K F+L + N+KV++ S Y + L L
Sbjct: 473 REKGFENSQNVLPSNYNTKDLNPELSGKFMLLDFMLAAIRADGNDKVVLISNYTQTLDLF 532
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
EQL + + + +DG +KKR ++ NDP S + + + S+KA G+NL+G
Sbjct: 533 -EQLARKRKY----GFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIG 587
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNM 572
A+R+ + D WNP + QA++R +R GQK+ ++Y ++ S ++E L+RQ K S+
Sbjct: 588 ANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRMVASGSIEEKILQRQTHKKSLSST 647
Query: 573 VFPSSDGG 580
+ +++
Sbjct: 648 IIDNNESA 655
>gi|195470937|ref|XP_002087763.1| GE14966 [Drosophila yakuba]
gi|194173864|gb|EDW87475.1| GE14966 [Drosophila yakuba]
Length = 772
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 146/548 (26%), Positives = 255/548 (46%), Gaps = 89/548 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + + ++
Sbjct: 146 PHQREGVRFMYECVEG-----------KRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQG 194
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P ++++P S++ WE+EF KW L G+ L+
Sbjct: 195 PECKPTINKAIVVSPSSLVKNWEKEFTKW-------------LQGR-------LLCLPME 234
Query: 187 GRGKVGLIRYVKLYSW---KMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDE 240
G K IR ++ +S ++GT +L +SY R++ +++ E+ G+ + DE
Sbjct: 235 GGTKENTIRALEQFSMTSSRLGTPVLLISYETFRIYAEILCKYEV--------GMVICDE 286
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF----------- 289
GH +N D ++AL +KT+RR++LSGTP QN+ E + ++ V E
Sbjct: 287 GHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNF 346
Query: 290 -GEVLR---TVRKSG-REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGT 344
+LR T G R+ + K LI + +C R ++ L + V K T
Sbjct: 347 ESAILRGQNTDSTEGERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVICAKLT 406
Query: 345 VLQESLPGLRHSVVILQPDEFQKRL--CKAVEGVKSFVELNYCVSLLSVHPSLLPQQ--- 399
+Q L L+ D+ ++ L C + + ++ + S HP L+ ++
Sbjct: 407 SIQ-----LELYTNFLKSDQVRRSLADCNEKASLTALADITTLKKICS-HPDLIYEKITA 460
Query: 400 ----FFESFDVDSAKLARLKLDPEAGIK---TRFLLILLELSTNEKVLVFSQYIEPLTLI 452
F S +V + L+PE K F+L + N+KV++ S Y + L L
Sbjct: 461 REKGFENSQNVLPSNYNTKDLNPELSGKFMLLDFMLAAIRADGNDKVVLISNYTQTLDLF 520
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
EQL + + + +DG +KKR ++ NDP S + + + S+KA G+NL+G
Sbjct: 521 -EQLARKRKY----GFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIG 575
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNM 572
A+R+ + D WNP + QA++R +R GQK+ ++Y ++ S ++E L+RQ K S+
Sbjct: 576 ANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRMVASGSIEEKILQRQTHKKSLSST 635
Query: 573 VFPSSDGG 580
+ +++
Sbjct: 636 IIDNNESA 643
>gi|312383263|gb|EFR28419.1| hypothetical protein AND_03670 [Anopheles darlingi]
Length = 814
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 146/532 (27%), Positives = 244/532 (45%), Gaps = 72/532 (13%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F++ + G + G NGCI++ G GKT + L ++
Sbjct: 185 PHQREGVRFMYDCVTG-----------AKGDFNGCIMADEMGLGKTLQCITLLWTLLRQS 233
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P +I+ P S++ W +EF KW L + N A MD +
Sbjct: 234 PDCKPTIGKAIIVCPSSLVKNWYKEFGKW-------------LGCRVNCLA---MDGGSK 277
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDEGHT 243
L +Y+ S++ GT +L +SY RL+ +++ E+ +L D EGH
Sbjct: 278 EHTTKELEQYMANQSYRHGTPVLIISYETFRLYADILNASEVGAVLCD--------EGHR 329
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREI 303
+N + ++AL +KT+RR++LSGTP QN+ E + L V RK EI
Sbjct: 330 LKNCENLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLLHFVNPGMLGTTAEFRKQ-YEI 388
Query: 304 SKAKHASLISSIGRCANHRDDEKLK--ELKEKIAPFVN---VHKGTVLQESLPGLRHSVV 358
+ G+ AN D E+ K E +++A VN + + + L ++ +
Sbjct: 389 PILR--------GQDANSTDTEREKAAERLQELAALVNRCMIRRTSALLTKYLPVKFEMN 440
Query: 359 ILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFD-------VDSAKL 411
+Q ++ + + + + L HP L+ + E D + A
Sbjct: 441 RIQSGRAYNNNGQSRKATLTALSNITTLKKLCNHPDLVYDKIQEGADGFEKAGNILPANY 500
Query: 412 ARLKLDPEAGIKTRFLLILL---ELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEV 468
+ +L PE G K L +L + +TN+K+++ S Y + L L + R R G
Sbjct: 501 SPRELRPELGAKLLLLDCMLASIKTNTNDKIVLVSNYTQTLDLFEKLCRKR-----GYGY 555
Query: 469 LYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVE 528
+ +DG +KKR ++ N P S I + S+KA G+NL+GA+R+V+ D WNP +
Sbjct: 556 VRLDGTMTIKKRGKVVDQFNSPDSSDFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPAND 615
Query: 529 RQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGG 580
QA++R +R GQK+ +Y L+ + ++E +RQ K S V +++ G
Sbjct: 616 EQAMARVWRDGQKKPCFIYRLLATGSIEEKIFQRQTHKKALSTTVVDNNEDG 667
>gi|198473012|ref|XP_001356143.2| GA17651 [Drosophila pseudoobscura pseudoobscura]
gi|292630937|sp|Q29KH2.2|RAD54_DROPS RecName: Full=DNA repair and recombination protein RAD54-like;
AltName: Full=Protein okra
gi|198139260|gb|EAL33203.2| GA17651 [Drosophila pseudoobscura pseudoobscura]
Length = 782
Score = 180 bits (456), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 145/551 (26%), Positives = 258/551 (46%), Gaps = 93/551 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + + +K
Sbjct: 154 PHQREGVRFMYECVEG-----------KRGNFNGCIMADEMGLGKTLQCVALVWTLLKQS 202
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
C+P +I++P S++ WE+EF KW L G+ + A+
Sbjct: 203 AECKPTINKCIIVSPSSLVKNWEKEFTKW-------------LHGRMHCLAM-------E 242
Query: 187 GRGKVGLIRYVKLYSW----KMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFD 239
G K +R ++ +S ++GT +L +SY R++ +++ E+ G+ + D
Sbjct: 243 GGSKENTVRALEQFSMNASTRLGTPVLLISYETFRIYAEILCKYEV--------GMVICD 294
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF---------- 289
EGH +N D ++AL +KT+RR++LSGTP QN+ E + ++ V E
Sbjct: 295 EGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRN 354
Query: 290 --GEVLR--TVRKSGREISKA--KHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
+LR + +E +A K LI + +C R ++ L + V K
Sbjct: 355 FENCILRGQNADSTDKERDRALEKTQELIKLVDQCIIRRTNQILTKYLPVKFEMVICAKL 414
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRL--CKAVEGVKSFVELNYCVSLLSVHPSLLPQQFF 401
T +Q L+ L+ D+ ++ L CK + + ++ L S HP+L+ ++
Sbjct: 415 TPIQ-----LQLYTNFLKSDQVRRSLADCKEKASLTALADITTLKKLCS-HPNLICEKIA 468
Query: 402 ---ESFDVDSAKLARLKLDPEAGIKTR---------FLLILLELSTNEKVLVFSQYIEPL 449
+ F+ +S + + +P+ I F+L + N+KV++ S Y + L
Sbjct: 469 AEEKGFE-NSQNILPINYNPKGEINPELSGKFKLLDFMLAAIRAHGNDKVVLISNYTQTL 527
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509
L EQL + + + +DG +KKR ++ NDP S + + S+KA G+N
Sbjct: 528 DLF-EQLARKRKY----GFVRLDGTMSIKKRSKVVDRFNDPESDCFLFMLSSKAGGCGLN 582
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
L+GA+R+ + D WNP + QA++R +R GQK+ ++Y L+ S ++E L+RQ K
Sbjct: 583 LIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSL 642
Query: 570 SNMVFPSSDGG 580
S+ + +++
Sbjct: 643 SSTIIDNNESA 653
>gi|430812744|emb|CCJ29865.1| unnamed protein product [Pneumocystis jirovecii]
Length = 796
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 158/547 (28%), Positives = 249/547 (45%), Gaps = 92/547 (16%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ EG +F++K + G +D NGCI++ G GKT + +
Sbjct: 208 KILRPHQIEGVKFLYKCVTGMVDF----------RANGCIMADEMGLGKTLQCITLMWTL 257
Query: 128 MKLHPRCR------PVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
+K P+ + +I+ P S++ W E KW L K ++ L+
Sbjct: 258 LKQSPQAKRSTIQKAIIVCPSSLVRNWANELDKW--------LGKGTIN--------PLI 301
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLSYRLFEKLVSGDELSGILLDLPGL 235
++K R ++ L L W TG IL +SY + ++ D+L + GL
Sbjct: 302 IDKKNNRDQLVL----SLSKWVSATGKDIVQPILIISYEMLR--MNIDQLKKCPI---GL 352
Query: 236 FVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-------RQE 288
+ DEGH +N ++ F AL ++ +RRIILSGTP QN+ E + L+ V R E
Sbjct: 353 LLCDEGHRLKNSESLTFSALDSLQVQRRIILSGTPIQNDLSEYFSLLNFVNPGLLGSRSE 412
Query: 289 FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQE 348
F + GR+ A IG D KL+EL + F+ +L +
Sbjct: 413 FRKTFELPILKGRD---ALGTDKDREIG-------DHKLEELSVLVNKFIIRRTNDILSK 462
Query: 349 SLPGLRHSVVILQPDEFQKRLCKA----------VEGV--KSFVELNYCVSLLSVHPSLL 396
LP VV FQK L K+ V+G+ + +++ L + HP+LL
Sbjct: 463 YLPVKYEHVVFCNLSPFQKDLYKSFVSSREVNNLVKGIGNQPLKAIDFLKKLCN-HPTLL 521
Query: 397 P-----QQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS-----TNEKVLVFSQYI 446
+QF F D D + + +++ L+ TN+K+++ S Y
Sbjct: 522 DIENDLKQFEHCFPNDFIPKNSKDRDIKIWYSGKMMVLDRMLARIRKDTNDKIVLISNYT 581
Query: 447 EPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCE 506
+ L L+ + R R R G L +DG + KRQ I+ NDP S I L S+KA
Sbjct: 582 QTLNLLEKLCRSR---RYGS--LRLDGTMNTNKRQKLIDKFNDPESDEFIFLLSSKAGGC 636
Query: 507 GINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
G+NL+GA+R++L D WNP ++QA++R +R GQK+ +Y I + T+E +RQ+ K
Sbjct: 637 GLNLIGANRLILFDPDWNPAADQQALARVWRDGQKKDCFIYRFIATGTIEEKIFQRQSHK 696
Query: 567 VWWSNMV 573
S+ V
Sbjct: 697 QSLSSCV 703
>gi|254570653|ref|XP_002492436.1| DNA-dependent ATPase [Komagataella pastoris GS115]
gi|238032234|emb|CAY70235.1| DNA-dependent ATPase [Komagataella pastoris GS115]
gi|328353550|emb|CCA39948.1| DNA repair and recombination protein RAD54 and RAD54-like protein
[Komagataella pastoris CBS 7435]
Length = 838
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 156/547 (28%), Positives = 249/547 (45%), Gaps = 78/547 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ G +F+++ +G +D GCI++ G GKT + L
Sbjct: 245 KILRPHQISGVKFLFRCTSGLVD----------ASAKGCIMADEMGLGKTLQCIALLWTL 294
Query: 128 MKLHPRC-----RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ PR + +++ P S++ W EF KW GK +A+
Sbjct: 295 LRQSPRGTKTIEKAIVVCPSSLVKNWANEFDKW--------------LGKGTLTPLAI-- 338
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTG------ILGLSYRLFEKLVSGDELSGILLDLPGLF 236
G+ G +L W M TG +L +SY + V + L G + GL
Sbjct: 339 ---DGKSAKGSTISSQLSQWAMATGRNIVRPVLIVSYETLRRNV--ESLKGTKV---GLM 390
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTV 296
+ DEGH +N D+ F AL+ + RR+ILSGTP QN+ E + L+
Sbjct: 391 LADEGHRLKNGDSLTFTALNSLDCERRVILSGTPIQNDLSEYFSLLTFANPGLLGTRNEF 450
Query: 297 RKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHS 356
RK+ SL R + D+KLKEL E +A F+ +L + LP
Sbjct: 451 RKNYENPILRGRDSLADDKER---EKGDQKLKELTEIVARFIIRRTNDILSKYLPVKYEY 507
Query: 357 VVILQPDEFQKRLCKAVEGVKSFVELNYCV-----SLLSV--------HPSLL--PQQF- 400
V+ E QK L + KS +L V SL S+ HP+LL P+
Sbjct: 508 VIFCNLSETQKSLYQRFTASKSISKLVKEVGGGAQSLQSIGLLKKLCTHPNLLNLPEDIE 567
Query: 401 -FESF---DVDSAKLARLKLDPEAGIKTRFLLIL-----LELSTNEKVLVFSQYIEPLTL 451
E+ D D R + + ++FL++ + TN+K+++ S Y + L L
Sbjct: 568 GCENLLPDDYDYGHGNRRNREVQVWHSSKFLILQRFLYKINKETNDKIVIISNYTQTLDL 627
Query: 452 IMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLV 511
I E+L + R G L +DG ++ KRQ ++ N+P + + L S+KA GINL+
Sbjct: 628 I-EKLC--ISSRYGS--LRLDGTMNINKRQKLVDKFNNPEGKEFVFLLSSKAGGCGINLI 682
Query: 512 GASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSN 571
GA+R++L+D WNP ++QA++R +R GQ + +Y I + ++E +RQ+ K+ S+
Sbjct: 683 GANRLILVDPDWNPASDQQALARVWRDGQTKNCFIYRFIATGSIEEKIFQRQSAKLQLSS 742
Query: 572 MVFPSSD 578
V S+D
Sbjct: 743 CVVDSND 749
>gi|260815483|ref|XP_002602502.1| hypothetical protein BRAFLDRAFT_281964 [Branchiostoma floridae]
gi|229287813|gb|EEN58514.1| hypothetical protein BRAFLDRAFT_281964 [Branchiostoma floridae]
Length = 700
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 150/541 (27%), Positives = 243/541 (44%), Gaps = 86/541 (15%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F+W + G G GCI++ G GKT + L +K
Sbjct: 108 PHQREGVKFMWDCVTG----------ERIPGSQGCIMADEMGLGKTLQCITLLWTLLKQS 157
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P +P +++ P S++ W E KW L + N A+ D+ +
Sbjct: 158 PDAKPTIDKAIVVTPSSLVKNWYNEINKW-------------LGTRVNALAI---DSGSK 201
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
+ L ++ ++ + IL +SY F + +L P GL + DEGH +
Sbjct: 202 DQIDRNLDSFMSQQGRRVSSPILIISYETFRLH------AAVLHRGPIGLVICDEGHRLK 255
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR-------QEFGEVLRTVRK 298
N + ++ALS +K RRR++LSGTP QN+ E + + V QEF + T
Sbjct: 256 NCENLTYQALSGLKCRRRVLLSGTPIQNDLLEYFSLVHFVNTGILGTAQEFKKRFETPIL 315
Query: 299 SGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
GR+ S + R +EKLKEL + + + ++L + LP VV
Sbjct: 316 RGRDASASDKD----------QKRGEEKLKELLDIVDRCIIRRTASILSKYLPVKIEQVV 365
Query: 359 --------------ILQPDEFQKRLCKAVEGVKSFVELNYCVSL--LSVHPSLLPQQFFE 402
++Q Q +L K+ G + L L HPSL+ ++ E
Sbjct: 366 CCRLTPLQTALYKHMVQSKLVQAQLDKSKSGKVTGSAFTAITQLKKLCNHPSLIYEKCLE 425
Query: 403 -------SFDVDSAKLARLKLDPEAGIKT---RFLLILLELSTNEKVLVFSQYIEPLTLI 452
+ D+ K + + PE K ++L + + T++KV++ S Y + L L
Sbjct: 426 GDEGLDGALDLFPEKYSPKHIQPELSGKMLVLDYILAMTKSKTSDKVVLVSNYTQTLDLF 485
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
+ R R G + +DG +KKR + N+PSS I + S+KA G+NL+G
Sbjct: 486 EKLCRSR-----GYLYVRLDGSMTIKKRAKVVERFNNPSSPEFIFMLSSKAGGCGLNLIG 540
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNM 572
A+R+V+ D WNP + QA++R +R GQK+ ++Y L+ + T+E +RQA K S+
Sbjct: 541 ANRLVMFDPDWNPANDEQAMARVWRDGQKKQCYIYRLLATGTIEEKIFQRQAHKKALSSC 600
Query: 573 V 573
V
Sbjct: 601 V 601
>gi|357503521|ref|XP_003622049.1| Chromatin remodeling complex subunit [Medicago truncatula]
gi|355497064|gb|AES78267.1| Chromatin remodeling complex subunit [Medicago truncatula]
Length = 644
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 144/490 (29%), Positives = 235/490 (47%), Gaps = 81/490 (16%)
Query: 49 DPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCII 108
+P + + VW+L+P + ++KM HQ+ FEF+W+NI G ++ ++ + T GG C+I
Sbjct: 216 EPLSKEEDNVWKLIP-EFKEKMHAHQKSAFEFLWQNIIGSMEPSLMQERSKTSGG--CVI 272
Query: 109 SHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPE 168
SH PG KT L + F Y+KL RP+I+ P+S L TW +E KK + +P + +P
Sbjct: 273 SHVPG--KTFLIISFRVRYLKLFLGKRPLILTPKSTLYTWHKELKKMEV-LP--KVPRP- 326
Query: 169 LSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGI 228
G +++V L L K G+ ++
Sbjct: 327 ----------------------TGDVKHV--------LDCLALKGSQQTKFAHGNYMAKT 356
Query: 229 LLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE 288
L ++PG+ + DE + PR+ + + K L + R +LSGT FQNNF E NT L R +
Sbjct: 357 LREIPGILILDEAYNPRSTKSRLKKCLMELPIELRKLLSGTLFQNNFCEYFNTPCLARPK 416
Query: 289 F-GEVLRTVR----KSGREISKAKH-------ASLISSIGRCAN-HRDDEKLKELK--EK 333
F EVLR + + G +KA+H + +I R N H D+EK++ L +K
Sbjct: 417 FVHEVLRELDFKYLRRGYGENKAQHFLEARPRRFFMENIARKINSHNDEEKMQGLPVLQK 476
Query: 334 I-APFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVEL-NYCVSLLSV 391
I + F++V++ ++ PGL+ ++ + Q + ++ K E +Y + V
Sbjct: 477 ITSSFIDVYESGNSSDTPPGLQIYTLVRNTYDEQHEVIYKLQ--KKMAECTSYSLEQQHV 534
Query: 392 HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILL-ELSTNEKVLVFSQYIEPLT 450
H + ++ + +L ++ D G K RF + L+ + NEK
Sbjct: 535 HINFFSKE-------ELKRLEGIEFDLSKGSKIRFFMSLISHVVKNEKSY---------- 577
Query: 451 LIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINL 510
LR FN + G+EVL + D+ +R I+ DP S + I+LAS AC +GI+L
Sbjct: 578 -----LRSTFNGKNGKEVLLLTSDLDLFERGKIIDKFEDPHSGSEILLASINACAKGISL 632
Query: 511 VGASRVVLLD 520
ASRV+ LD
Sbjct: 633 TSASRVIFLD 642
>gi|194760847|ref|XP_001962644.1| GF14336 [Drosophila ananassae]
gi|292630861|sp|B3MMA5.1|RAD54_DROAN RecName: Full=DNA repair and recombination protein RAD54-like;
AltName: Full=Protein okra
gi|190616341|gb|EDV31865.1| GF14336 [Drosophila ananassae]
Length = 791
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 146/548 (26%), Positives = 253/548 (46%), Gaps = 89/548 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + + ++
Sbjct: 161 PHQREGVRFMYECVEG-----------KKGDFNGCIMADEMGLGKTLQCVTLVWTLLRQG 209
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P +P ++++P S++ WE+EF KW L G+ L+
Sbjct: 210 PESKPTINKAIVVSPSSLVKNWEKEFTKW-------------LQGR-------LLCLAME 249
Query: 187 GRGKVGLIRYVKLYSW---KMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDE 240
G K IR ++ +S K+GT +L +SY R++ +++ E+ G+ + DE
Sbjct: 250 GGTKENTIRVLEQFSMTSSKLGTPVLLISYETFRIYAEILCKYEV--------GMVICDE 301
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF----------- 289
GH +N D ++AL +KT+RR++LSGTP QN+ E + ++ V E
Sbjct: 302 GHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNF 361
Query: 290 -GEVLRTVRKSG----REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGT 344
+LR R+ + K LI + +C R ++ L + V K T
Sbjct: 362 ENSILRGQNADSTEGERKKAIEKTQELIGLVDQCIIRRTNQILTKYLPIKFEMVICVKLT 421
Query: 345 VLQESLPGLRHSVVILQPDEFQKRL--CKAVEGVKSFVELNYCVSLLSVHPSLLPQQ--- 399
+Q L+ L D+ ++ L C + + ++ + S HP L+ Q+
Sbjct: 422 AIQ-----LQLYTNFLNSDQVRRSLADCNEKASLTALADITTLKKICS-HPDLIHQKIEA 475
Query: 400 ----FFESFDVDSAKLARLKLDPEAGIK---TRFLLILLELSTNEKVLVFSQYIEPLTLI 452
F S +V + ++ PE K F+L + + N+KV++ S Y + L L
Sbjct: 476 KEKGFENSQNVLPSNYKPKEICPEWSGKFMLLDFMLAAIRAAGNDKVVLISNYTQTLDLF 535
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
+ R R + G + +DG +KKR ++ NDP S+ + + S+KA G+NL+G
Sbjct: 536 EQLARKR---KYG--FVRLDGTMSIKKRSKVVDKFNDPDSECFLFMLSSKAGGCGLNLIG 590
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNM 572
A+R+ + D WNP + QA++R +R GQK+ ++Y L+ S T+E L+RQ K S+
Sbjct: 591 ANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGTIEEKILQRQTHKKSLSST 650
Query: 573 VFPSSDGG 580
+ +++
Sbjct: 651 IIDNNESS 658
>gi|195031155|ref|XP_001988299.1| GH10642 [Drosophila grimshawi]
gi|292630863|sp|B4JCS7.1|RAD54_DROGR RecName: Full=DNA repair and recombination protein RAD54-like;
AltName: Full=Protein okra
gi|193904299|gb|EDW03166.1| GH10642 [Drosophila grimshawi]
Length = 786
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 147/544 (27%), Positives = 251/544 (46%), Gaps = 82/544 (15%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + ++
Sbjct: 151 PHQREGVRFMYECVEG-----------KRGSFNGCIMADEMGLGKTLQCVTLTWTLLRQS 199
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
C+P ++++P S++ WE+EF KW L G+ + A M+ +
Sbjct: 200 ADCKPTISKAIVVSPSSLVKNWEKEFTKW-------------LHGRMHCLA---MEGGSK 243
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDEGHT 243
L ++ S + GT +L +SY RL+ ++ E+ G+ + DEGH
Sbjct: 244 EETTRTLEQFAMNTSTRCGTPVLLISYETFRLYAHILCKTEV--------GMVICDEGHR 295
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF------------GE 291
+N D ++AL +KT+RR++LSGTP QN+ E + ++ V E
Sbjct: 296 LKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTATDFKRNFENA 355
Query: 292 VLR----TVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQ 347
+LR + RE + K LI + +C R ++ L + V K T +Q
Sbjct: 356 ILRGQNADSTDTERERALLKTQELIGLVNQCIIRRTNQILTKYLPVKFEMVVCAKLTAVQ 415
Query: 348 ESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSL--LSVHPSLLPQQ------ 399
L+ L+ D+ + L E S L+ +L L HP L+ ++
Sbjct: 416 -----LQIYTNFLKSDQVCRSLADCNEKT-SLTALSDITTLKKLCNHPDLIYEKLAAREK 469
Query: 400 -FFESFDVDSAKLARLKLDPEAGIK---TRFLLILLELSTNEKVLVFSQYIEPLTLIMEQ 455
F S +V A ++PE K F+L + ++++KV++ S Y + L L EQ
Sbjct: 470 GFENSQNVLPANYKPKDINPELSGKFMLLDFMLAAIRANSDDKVVLISNYTQTLDLF-EQ 528
Query: 456 LRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515
L + + + +DG +KKR ++ NDPSS + + S+KA G+NL+GA+R
Sbjct: 529 LARKRKY----SYVRLDGTMTIKKRSKVVDRFNDPSSDCFLFMLSSKAGGCGLNLIGANR 584
Query: 516 VVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFP 575
+ + D WNP + QA++R +R GQK+ ++Y L+ S ++E L+RQ K S+ +
Sbjct: 585 LFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIID 644
Query: 576 SSDG 579
+++
Sbjct: 645 NNES 648
>gi|195398201|ref|XP_002057711.1| GJ18280 [Drosophila virilis]
gi|292630877|sp|B4M9A8.1|RAD54_DROVI RecName: Full=DNA repair and recombination protein RAD54-like;
AltName: Full=Protein okra
gi|194141365|gb|EDW57784.1| GJ18280 [Drosophila virilis]
Length = 786
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 141/545 (25%), Positives = 252/545 (46%), Gaps = 82/545 (15%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + ++
Sbjct: 151 PHQREGVRFMYECVEG-----------KRGNFNGCIMADEMGLGKTLQCVTLTWTLLRQS 199
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P ++++P S++ WE+EF KW L G+ + A M+ +
Sbjct: 200 PDCKPTISKAIVVSPSSLVKNWEKEFTKW-------------LHGRMHCLA---MEGGSK 243
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDEGHT 243
L ++ + + GT +L +SY RL+ ++ E+ G+ + DEGH
Sbjct: 244 EDTTRTLEQFAMNTATRCGTPVLLISYETFRLYSHILCKTEV--------GMVICDEGHR 295
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF------------GE 291
+N D ++AL +KT+RR++LSGTP QN+ E + ++ V E
Sbjct: 296 LKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTGSDFKRNFENA 355
Query: 292 VLR----TVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQ 347
+LR + RE + K L+ + +C R ++ L + V K T +Q
Sbjct: 356 ILRGQNADSTDAERERALEKTQELVGLVNQCIIRRTNQILTKYLPVKFEMVVCAKLTAVQ 415
Query: 348 ESLPGLRHSVVILQPDEFQKRL--CKAVEGVKSFVELNYCVSLLSVHPSLLPQQ------ 399
L+ L+ D+ ++ L C + + ++ L + HP L+ ++
Sbjct: 416 -----LQLYTNFLKSDQVRRSLADCTDKTTLTALADITTLKKLCN-HPDLIYEKIAAREK 469
Query: 400 -FFESFDVDSAKLARLKLDPEAGIK---TRFLLILLELSTNEKVLVFSQYIEPLTLIMEQ 455
F S +V ++PE K F+L + ++++KV++ S Y + L L EQ
Sbjct: 470 GFENSQNVLPPNYKPKDVNPELSGKFMLLDFMLAAIRANSDDKVVLISNYTQTLDLF-EQ 528
Query: 456 LRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515
L + + + +DG +KKR ++ NDP++ + + S+KA G+NL+GA+R
Sbjct: 529 LARKRKY----SYVRLDGTMTIKKRSKVVDRFNDPATDCFLFMLSSKAGGCGLNLIGANR 584
Query: 516 VVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFP 575
+ + D WNP + QA++R +R GQK+ ++Y L+ S ++E L+RQ K S+ +
Sbjct: 585 LFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSSIID 644
Query: 576 SSDGG 580
++D
Sbjct: 645 NNDSA 649
>gi|195116621|ref|XP_002002852.1| GI10760 [Drosophila mojavensis]
gi|292630864|sp|B4KHL5.1|RAD54_DROMO RecName: Full=DNA repair and recombination protein RAD54-like;
AltName: Full=Protein okra
gi|193913427|gb|EDW12294.1| GI10760 [Drosophila mojavensis]
Length = 783
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 144/543 (26%), Positives = 251/543 (46%), Gaps = 78/543 (14%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + ++
Sbjct: 151 PHQREGVRFMYECVEG-----------KRGNFNGCIMADEMGLGKTLQCVTLTWTLLRQS 199
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P +I++P S++ WE+EF KW L G+ + A M+ +
Sbjct: 200 PDCKPTISKAIIVSPSSLVKNWEKEFTKW-------------LHGRMHCLA---MEGGSK 243
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDEGHT 243
L ++ + + GT +L +SY RL+ ++ E+ G+ + DEGH
Sbjct: 244 EDTTRALEQFAMNTATRCGTPVLLISYETFRLYAHILCKTEV--------GMVICDEGHR 295
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGEVLRTVRKSGRE 302
+N D ++AL +KT+RR++LSGTP QN+ E + ++ V E G R
Sbjct: 296 LKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENS 355
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI--L 360
I + ++A + R +K +EL + + +L + LP VV L
Sbjct: 356 ILRGQNADSTDA----ERQRALQKTQELIGLVNQCIIRRTNQILTKYLPVKFEMVVCVKL 411
Query: 361 QPDEFQ--KRLCKAVEGVKSFVELNYCVSLLSV-----------HPSLLPQQ-------F 400
P + Q K+ + +S + N SL ++ HP L+ ++ F
Sbjct: 412 TPVQLQIYTNFLKSDQVRRSLADCNEKASLTALADITTLKKLCNHPDLIYEKIAAKEKGF 471
Query: 401 FESFDVDSAKLARLKLDPEAGIK---TRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLR 457
S +V ++PE K F+L + ++++KV++ S Y + L L EQL
Sbjct: 472 ENSQNVLPPNYKPKDVNPELSGKFMLLDFMLAAIRANSDDKVVLISNYTQTLDLF-EQLA 530
Query: 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
+ + + +DG +KKR ++ NDPS+ + + S+KA G+NL+GA+R+
Sbjct: 531 RKRKY----TYVRLDGTMTIKKRSKVVDRFNDPSTDCFLFMLSSKAGGCGLNLIGANRLF 586
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSS 577
+ D WNP + QA++R +R GQK+ ++Y L+ S ++E L+RQ K S+ + ++
Sbjct: 587 MFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNN 646
Query: 578 DGG 580
+
Sbjct: 647 ESS 649
>gi|195161916|ref|XP_002021802.1| GL26701 [Drosophila persimilis]
gi|292630865|sp|B4GS98.1|RAD54_DROPE RecName: Full=DNA repair and recombination protein RAD54-like;
AltName: Full=Protein okra
gi|194103602|gb|EDW25645.1| GL26701 [Drosophila persimilis]
Length = 782
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 145/551 (26%), Positives = 257/551 (46%), Gaps = 93/551 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + + +K
Sbjct: 154 PHQREGVRFMYECVEG-----------KRGNFNGCIMADEMGLGKTLQCVALVWTLLKQS 202
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
C+P +I++P S++ WE+EF KW L G+ + A+
Sbjct: 203 AECKPTINKCIIVSPSSLVKNWEKEFTKW-------------LHGRMHCLAM-------E 242
Query: 187 GRGKVGLIRYVKLYSW----KMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFD 239
G K +R ++ +S ++GT +L +SY R++ +++ E+ G+ + D
Sbjct: 243 GGSKENTVRALEQFSMNASTRLGTPVLLISYETFRIYAEILCKYEV--------GMVICD 294
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF---------- 289
EGH +N D ++AL +KT+RR++LSGTP QN+ E + ++ V E
Sbjct: 295 EGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRN 354
Query: 290 --GEVLR--TVRKSGREISKA--KHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
+LR + +E +A K LI + +C R ++ L + V K
Sbjct: 355 FENCILRGQNADSTDKERDRALEKTQELIKLVDQCIIRRTNQILTKYLPVKFEMVICAKL 414
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRL--CKAVEGVKSFVELNYCVSLLSVHPSLLPQQFF 401
T +Q L+ L+ D+ ++ L CK + + ++ L S HP+L+ ++
Sbjct: 415 TPIQ-----LQLYTNFLKSDQVRRSLADCKEKASLTALADITTLKKLCS-HPNLICEKIA 468
Query: 402 ---ESFDVDSAKLARLKLDPEAGIKTR---------FLLILLELSTNEKVLVFSQYIEPL 449
+ F+ +S + + +P+ I F+L + N+KV++ S Y + L
Sbjct: 469 AGEKGFE-NSQNILPINYNPKGEINPELSGKFKLLDFMLAAIRAHGNDKVVLISNYTQTL 527
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509
L R R + G + +DG +KKR ++ NDP S + + S+KA G+N
Sbjct: 528 DLFELLARKR---KYG--FVRLDGTMSIKKRSKVVDRFNDPESDCFLFMLSSKAGGCGLN 582
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
L+GA+R+ + D WNP + QA++R +R GQK+ ++Y L+ S ++E L+RQ K
Sbjct: 583 LIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSL 642
Query: 570 SNMVFPSSDGG 580
S+ + +++
Sbjct: 643 SSTIIDNNESA 653
>gi|302773596|ref|XP_002970215.1| hypothetical protein SELMODRAFT_441095 [Selaginella moellendorffii]
gi|300161731|gb|EFJ28345.1| hypothetical protein SELMODRAFT_441095 [Selaginella moellendorffii]
Length = 1901
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 180/626 (28%), Positives = 276/626 (44%), Gaps = 101/626 (16%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P + K + PHQ G F+W N ++ ++ S G GCI++H+ G GKT +
Sbjct: 968 IPASISKHLKPHQLCGVRFMWDNC-----IESVEKVKSGDVGLGCILAHSMGLGKTLQVI 1022
Query: 122 VFLQAYMK---LHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV 178
FL M+ L+ + V++ ++L W+ EF+KW E++ E V
Sbjct: 1023 AFLYTVMRNVDLNFKTVLVVVP-VNVLHNWKREFEKW---------RPAEVAPLE----V 1068
Query: 179 ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG---------DELSGIL 229
+++D + + L++ SWK G++ + Y F L +G D L L
Sbjct: 1069 SMLDTSRDNATRASLLK-----SWKEKGGVMLIGYAAFRNLSTGSHVKDKETRDTLCKCL 1123
Query: 230 LDLPG--LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
D PG + V DEGHT +ND + AL R+K+ RRI ++G+P QNN E + VR
Sbjct: 1124 QD-PGADIVVCDEGHTIKNDKADITIALQRVKSGRRIAMTGSPLQNNLMEYYCMVDFVRP 1182
Query: 288 EF-GEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKE----LKEKIAPFVNVHK 342
F G K I+ +HA + D +K+K L ++++ FV
Sbjct: 1183 GFLGPQAIFRNKVQNPIANGQHAD--------STPDDVKKMKRTVHILHKRLSGFVQRRD 1234
Query: 343 GTVLQESLPGLRHSVVILQPDEFQKRLCKAV-----EGVKSFVELNYCVSLLSVHPSLLP 397
TVL++ LP V+ ++ QK+L K G + + ++ + HP LL
Sbjct: 1235 MTVLKDELPPKCVWVISVRLSPLQKQLYKKFLSLCETGRSKLFDHYHVLAKIWNHPDLLA 1294
Query: 398 ----QQFFESFDVDSAKLARL--------KLDPEAGI------------------KTRFL 427
Q+ E F VDS K + PEA + +
Sbjct: 1295 IAKEQRLNEEFIVDSEKEDSAENGQGCPKRASPEADSFEWCEEILKESKRDVLENSGKMV 1354
Query: 428 LILLELSTN----EKVLVFSQYIEPLTLIMEQLR------HRFNWREGQEVLYMDGKQDV 477
LI+ LS N EK LVFSQ + L LI L + W +G+E L +DG
Sbjct: 1355 LIMTLLSLNSSRGEKTLVFSQSLHTLDLIENFLDTIPLGGSQDVWNKGKEWLRLDGNTTA 1414
Query: 478 KKRQSSINVLNDPSSQA-RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAY 536
+RQ ++ NDP++ A + +L STKA G N+ GA+RV+++D WNP + QA+ RA+
Sbjct: 1415 SRRQQIADIFNDPNNTAIKCLLISTKAGSLGTNMTGANRVIIVDGSWNPTHDLQALFRAW 1474
Query: 537 RLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGG---GNDQTTASEPLED 593
R GQ + V VY L+ T+E RQ K + V + G D L+D
Sbjct: 1475 RYGQTKPVFVYRLLAYGTMEEKIYNRQLTKEGIAARVLDAHQVGRHLNADDLELMYTLDD 1534
Query: 594 KILEEMAQLYNNPSETLINAIIPQPK 619
EE QL + A +PK
Sbjct: 1535 DDDEEGTQLAGTEQQQQPGAKGQKPK 1560
>gi|302793538|ref|XP_002978534.1| hypothetical protein SELMODRAFT_443867 [Selaginella moellendorffii]
gi|300153883|gb|EFJ20520.1| hypothetical protein SELMODRAFT_443867 [Selaginella moellendorffii]
Length = 1858
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 180/626 (28%), Positives = 276/626 (44%), Gaps = 101/626 (16%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P + K + PHQ G F+W N ++ ++ S G GCI++H+ G GKT +
Sbjct: 972 IPASISKHLKPHQLCGVRFMWDNC-----IESVEKVKSGDVGLGCILAHSMGLGKTLQVI 1026
Query: 122 VFLQAYMK---LHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV 178
FL M+ L+ + V++ ++L W+ EF+KW E++ E V
Sbjct: 1027 AFLYTVMRNVDLNFKTVLVVVP-VNVLHNWKREFEKW---------RPAEVAPLE----V 1072
Query: 179 ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG---------DELSGIL 229
+++D + + L++ SWK G++ + Y F L +G D L L
Sbjct: 1073 SMLDTSRDNATRASLLK-----SWKEKGGVMLIGYAAFRNLSTGSHVKDKETRDTLCKCL 1127
Query: 230 LDLPG--LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
D PG + V DEGHT +ND + AL R+K+ RRI ++G+P QNN E + VR
Sbjct: 1128 QD-PGADIVVCDEGHTIKNDKADITIALQRVKSGRRIAMTGSPLQNNLMEYYCMVDFVRP 1186
Query: 288 EF-GEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKE----LKEKIAPFVNVHK 342
F G K I+ +HA + D +K+K L ++++ FV
Sbjct: 1187 GFLGPQAIFRNKVQNPIANGQHAD--------STPDDVKKMKRTVHILHKRLSGFVQRRD 1238
Query: 343 GTVLQESLPGLRHSVVILQPDEFQKRLCK-----AVEGVKSFVELNYCVSLLSVHPSLLP 397
TVL++ LP V+ ++ QK+L K G + + ++ + HP LL
Sbjct: 1239 MTVLKDELPPKCVWVISVRLSPLQKQLYKKFLSLCETGRSKLFDHYHVLAKIWNHPDLLA 1298
Query: 398 ----QQFFESFDVDSAKLARL--------KLDPEAGI------------------KTRFL 427
Q+ E F VDS K + PEA + +
Sbjct: 1299 IAKEQRLNEEFIVDSEKEDSAENGQGCPKRASPEADSFEWCEEILKESKRDVLENSGKMV 1358
Query: 428 LILLELSTN----EKVLVFSQYIEPLTLIMEQLR------HRFNWREGQEVLYMDGKQDV 477
LI+ LS N EK LVFSQ + L LI L + W +G+E L +DG
Sbjct: 1359 LIMTLLSLNSSRGEKTLVFSQSLHTLDLIENFLDTIPLGGSQDVWNKGREWLRLDGNTTA 1418
Query: 478 KKRQSSINVLNDPSSQA-RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAY 536
+RQ ++ NDP++ A + +L STKA G N+ GA+RV+++D WNP + QA+ RA+
Sbjct: 1419 SRRQQIADIFNDPNNTAIKCLLISTKAGSLGTNMTGANRVIIVDGSWNPTHDLQALFRAW 1478
Query: 537 RLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGG---GNDQTTASEPLED 593
R GQ + V VY L+ T+E RQ K + V + G D L+D
Sbjct: 1479 RYGQTKPVFVYRLLAYGTMEEKIYNRQLTKEGIAARVLDAHQVGRHLNADDLELMYTLDD 1538
Query: 594 KILEEMAQLYNNPSETLINAIIPQPK 619
EE QL + A +PK
Sbjct: 1539 DDDEEGTQLAGTEQQQQPGAKGQKPK 1564
>gi|449702030|gb|EMD42742.1| DNA repair and recombination protein RAD54B, putative [Entamoeba
histolytica KU27]
Length = 884
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 166/564 (29%), Positives = 251/564 (44%), Gaps = 74/564 (13%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT--GLTLVF--L 124
K+ PHQ+ G +F++ + G LK GNGCI++ G GKT +TL++ L
Sbjct: 272 KLRPHQKAGVKFMYDCVMG------LKQGFK---GNGCILADGMGLGKTIQAVTLIWTLL 322
Query: 125 QAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKW-GIDIPFYNLNKPELSGKENNGAVALMD 182
+ P C+ V ++AP S++ WE EFKKW G P + SG + + A++ MD
Sbjct: 323 RQGPNGEPTCKKVMVVAPSSLVGNWENEFKKWLGDAAP--RVVGVSCSGAKTDQAISDMD 380
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
G ++ +I Y +L + EK+ GL + DEGH
Sbjct: 381 ---FGYAEIMVISYDQLR----------IHIDKIEKIKGW-----------GLLICDEGH 416
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N D +A++R+ T+RR+ILSGTP QN E +S V + L ++ E
Sbjct: 417 RLKNADIKSSQAVNRVPTKRRVILSGTPIQNELGEFYAMVSFVNPDVLGSLSAFKRIYEE 476
Query: 303 -ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQ 361
I K++ N R KEL F+ V Q+ LP VV
Sbjct: 477 PIMKSRQFDCTPEEKYAGNQRS----KELTRLTKLFILRRTAKVNQKYLPPKVQHVVFCS 532
Query: 362 PDEFQKR----LCKAVEGVKSFVELNYC-------VSLLSVHPSLLPQQFFESF-DVDSA 409
QK+ LC K E C + +S HP L+ Q F ++F +V
Sbjct: 533 LTPLQKKIYTALCNLKNKPKGKDEKKSCQFQILTALKKVSNHPWLI-QDFVKTFPEVLDG 591
Query: 410 KLARLKL--DPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
L + D E KT FL LL EK+++ S Y E L I + + G
Sbjct: 592 ILPKGDALWDMELSGKTAFLAKLLAFLRKHKEKIVIVSNYTETLNFIAHHCK-----KCG 646
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG KR +N N+P I L S+KA G+NLVG + +V+ D WNP
Sbjct: 647 YPYIQLDGSVAATKRTQMVNRFNNPELDEFIFLLSSKAGGCGLNLVGGANLVMFDPDWNP 706
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA+ R +R GQK+ H+Y +++ T+E +RQ +K+ + V D ND++
Sbjct: 707 ANDEQAMGRVWRDGQKKKCHIYRTLSAGTVEEKMYQRQIKKLELAGKVVEGGD--DNDES 764
Query: 586 TASEPLEDKILEEMAQLYNNPSET 609
T +DK L+E+ + ET
Sbjct: 765 T----FDDKQLKELCAYKDTACET 784
>gi|326430759|gb|EGD76329.1| hypothetical protein PTSG_01031 [Salpingoeca sp. ATCC 50818]
Length = 752
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 159/540 (29%), Positives = 246/540 (45%), Gaps = 81/540 (15%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM 128
K+ PHQ EG +F+W N G++++ G NGCI++ G GKT + + +
Sbjct: 134 KLRPHQVEGVQFLW-NAVTGVNIE---------GFNGCIMADEMGLGKTFQCVTLVWTLL 183
Query: 129 KLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDN 183
P CRP +I+ P S++ W EF KW N L +
Sbjct: 184 TQSPDCRPTTNKAIIVCPSSLVKNWYNEFGKW-----------------LGNRISPLAVD 226
Query: 184 RKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGH 242
R K + R+V + ++ +L LSY ++ D IL P G+ + DEGH
Sbjct: 227 SGRDDMKRQMERFVS-ATGRVQHPVLILSYEALR--LNAD----ILCVKPIGIVICDEGH 279
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + +K+L ++KT RRIILSGTP QN EL +LV EF + S E
Sbjct: 280 RLKNSQSQTYKSLMQLKTARRIILSGTPIQN---ELLEYYALV--EFCNP--GLLGSAGE 332
Query: 303 ISKAKHASLISSIGRCANHRDDE----KLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ S A ++ E +L E+ E + V +L + LP VV
Sbjct: 333 FRKRFENPILRSRDSLATDKELEIGAQRLAEMTEIVNRCVIRRTNDILSKYLPPKIEQVV 392
Query: 359 ILQPDEFQKRLCKAVEGVK--------SFVELNYCVSL--LSVHPSLLPQQF-------- 400
+P Q + KA+ G K + L + L L HP LL +
Sbjct: 393 CCRPTNLQMEMYKAMLGAKMKRKDGTVTGSSLAFITELKKLCNHPQLLHDKIAGKGKTKD 452
Query: 401 --FESFD--VDSAKLARLKLDPEAGIKTRFLLILL---ELSTNEKVLVFSQYIEPLTLIM 453
F + D + K + +L P+ K L LL ++ T +K+++ S Y + L L
Sbjct: 453 KAFGALDPFLPQLKPSMQRLQPQLSGKLAVLDCLLATIKMQTTDKIVLVSNYTQTLELFT 512
Query: 454 EQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
R G + + +DG +K+RQ ++ NDP+S I + S+KA G+NL+GA
Sbjct: 513 TLCALR-----GYQYVRLDGSMTIKRRQKIVDRFNDPTSSDFIFMLSSKAGGCGLNLIGA 567
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQ ++ VY +T+ T+E L+RQA K S V
Sbjct: 568 NRLVMFDPDWNPANDEQAMARVWRDGQTKLCFVYRFVTTGTIEEKILQRQAHKKALSQCV 627
>gi|407041035|gb|EKE40490.1| DNA repair protein, putative [Entamoeba nuttalli P19]
Length = 883
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 166/564 (29%), Positives = 252/564 (44%), Gaps = 74/564 (13%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT--GLTLVF--L 124
K+ PHQ+ G +F++ + G LK GNGCI++ G GKT +TL++ L
Sbjct: 272 KLRPHQKAGVKFMYDCVMG------LKQGFK---GNGCILADGMGLGKTIQAVTLIWTLL 322
Query: 125 QAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKW-GIDIPFYNLNKPELSGKENNGAVALMD 182
+ P C+ V ++AP S++ WE EFKKW G P + SG + + A++ MD
Sbjct: 323 RQGPNGEPTCKKVMVVAPSSLVGNWENEFKKWLGNAAP--RVVGVSCSGAKTDQAISDMD 380
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
G ++ +I Y +L + EK+ GL + DEGH
Sbjct: 381 ---FGYAEIMVISYDQLR----------IHIDKIEKIKGW-----------GLLICDEGH 416
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N D +A++R+ T+RR+ILSGTP QN E +S V + L ++ E
Sbjct: 417 RLKNADIKSSQAVNRVPTKRRVILSGTPIQNELGEFYAMVSFVNPDVLGSLSAFKRIYEE 476
Query: 303 -ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQ 361
I K++ N R KEL F+ V Q+ LP VV
Sbjct: 477 PIMKSRQFDCTPEEKYAGNQRS----KELTRLTKLFILRRTSKVNQKYLPPKVQHVVFCS 532
Query: 362 PDEFQKR----LCKAVEGVKSFVELNYC-------VSLLSVHPSLLPQQFFESF-DVDSA 409
QK+ LC K E C + +S HP L+ Q F ++F +V
Sbjct: 533 LTPLQKKIYTALCTLKNKPKGKDEKKSCQFQILTALKKVSNHPWLI-QDFVKTFPEVLDG 591
Query: 410 KLARLKL--DPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
L + + D E KT FL LL EK+++ S Y E L I + + G
Sbjct: 592 VLPKGEALWDMELSGKTAFLAKLLAFLRKHKEKIVIVSNYTETLNFIAHHCK-----KCG 646
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG KR +N N+P I L S+KA G+NLVG + +V+ D WNP
Sbjct: 647 YPYIQLDGSVAATKRTQMVNRFNNPELDEFIFLLSSKAGGCGLNLVGGANLVMFDPDWNP 706
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA+ R +R GQK+ H+Y +++ T+E +RQ +K+ + V D ND++
Sbjct: 707 ANDEQAMGRVWRDGQKKKCHIYRTLSAGTVEEKMYQRQIKKLELAGKVVEGGD--DNDES 764
Query: 586 TASEPLEDKILEEMAQLYNNPSET 609
T +DK L+E+ + ET
Sbjct: 765 T----FDDKQLKELCAYKDTACET 784
>gi|195435389|ref|XP_002065674.1| GK15573 [Drosophila willistoni]
gi|292630875|sp|B4MX21.1|RAD54_DROWI RecName: Full=DNA repair and recombination protein RAD54-like;
AltName: Full=Protein okra
gi|194161759|gb|EDW76660.1| GK15573 [Drosophila willistoni]
Length = 784
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 142/550 (25%), Positives = 253/550 (46%), Gaps = 92/550 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F++ + G G NGCI++ G GKT + + ++
Sbjct: 155 PHQREGVRFMYDCVEG-----------KKGNFNGCIMADEMGLGKTLQCVTLVWTLLRQS 203
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
C+P +I++P S++ WE+EF KW L G+ + A+
Sbjct: 204 CECKPTITKAIIVSPSSLVKNWEKEFTKW-------------LHGRMHCLAM-------E 243
Query: 187 GRGKVGLIRYVKLYSW----KMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFD 239
G K I+ ++ +S ++GT +L +SY R++ ++ +E+ G+ + D
Sbjct: 244 GGSKEDTIKALEQFSMNTSTRLGTPVLLISYETFRIYANILCQNEV--------GMVICD 295
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS 299
EGH +N D ++AL +KT+RR++LSGTP QN+ E + ++ V E +++
Sbjct: 296 EGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRN 355
Query: 300 ----------------GREISKAKHASLISSIGRCANHRDDEKL-KELKEKIAPFVNVHK 342
RE + K LI + +C R ++ L K L K + V
Sbjct: 356 FENPILKGQNTDSSDKERERALEKTQELIGLVNQCIIRRTNQILTKYLPVKFEMVICVRL 415
Query: 343 GTVLQESLPGLRHSVVILQPDEFQKRL--CKAVEGVKSFVELNYCVSLLSVHPSLLPQQ- 399
+V L L+ D+ ++ L C + + ++ L S HP L+ ++
Sbjct: 416 TSV------QLEFYTNFLKSDKVRRSLADCNEKASLTALADITTLKKLCS-HPDLIYEKM 468
Query: 400 ------FFESFDVDSAKLARLKLDPEAGIK---TRFLLILLELSTNEKVLVFSQYIEPLT 450
F S ++ L+PE K F+L + ++++KV++ S Y + L
Sbjct: 469 LARDKGFENSQNILPTNYKPKDLNPELSGKFMLLDFMLATIRANSDDKVVLISNYTQTLD 528
Query: 451 LIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINL 510
L EQL + + + +DG +KKR ++ NDP + + + S+KA G+NL
Sbjct: 529 LF-EQLARKRKY----TFVRLDGTMTIKKRSKVVDRFNDPENDCFLFMLSSKAGGCGLNL 583
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS 570
+GA+R+ + D WNP + QA++R +R GQK+ ++Y L+ S ++E L+RQ K S
Sbjct: 584 IGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLS 643
Query: 571 NMVFPSSDGG 580
+ + +++
Sbjct: 644 STIIDNNESA 653
>gi|67475316|ref|XP_653352.1| DNA repair protein [Entamoeba histolytica HM-1:IMSS]
gi|56470295|gb|EAL47966.1| DNA repair protein, putative [Entamoeba histolytica HM-1:IMSS]
Length = 884
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 166/564 (29%), Positives = 251/564 (44%), Gaps = 74/564 (13%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT--GLTLVF--L 124
K+ PHQ+ G +F++ + G LK GNGCI++ G GKT +TL++ L
Sbjct: 272 KLRPHQKAGVKFMYDCVMG------LKQGFK---GNGCILADGMGLGKTIQAVTLIWTLL 322
Query: 125 QAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKW-GIDIPFYNLNKPELSGKENNGAVALMD 182
+ P C+ V ++AP S++ WE EFKKW G P + SG + + A++ MD
Sbjct: 323 RQGPNGEPTCKKVMVVAPSSLVGNWENEFKKWLGDAAP--RVVGVSCSGAKTDQAISDMD 380
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
G ++ +I Y +L + EK+ GL + DEGH
Sbjct: 381 ---FGYAEIMVISYDQLR----------IHIDKIEKIKGW-----------GLLICDEGH 416
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N D +A++R+ T+RR+ILSGTP QN E +S V + L ++ E
Sbjct: 417 RLKNADIKSSQAVNRVPTKRRVILSGTPIQNELGEFYAMVSFVNPDVLGSLSAFKRIYEE 476
Query: 303 -ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQ 361
I K++ N R KEL F+ V Q+ LP VV
Sbjct: 477 PIMKSRQFDCTPEEKYAGNQRS----KELTRLTKLFILRRTSKVNQKYLPPKVQHVVFCS 532
Query: 362 PDEFQKR----LCKAVEGVKSFVELNYC-------VSLLSVHPSLLPQQFFESF-DVDSA 409
QK+ LC K E C + +S HP L+ Q F ++F +V
Sbjct: 533 LTPLQKKIYTALCNLKNKPKGKDEKKSCQFQILTALKKVSNHPWLI-QDFVKTFPEVLDG 591
Query: 410 KLARLKL--DPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
L + D E KT FL LL EK+++ S Y E L I + + G
Sbjct: 592 ILPKGDALWDMELSGKTAFLAKLLAFLRKHKEKIVIVSNYTETLNFIAHHCK-----KCG 646
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG KR +N N+P I L S+KA G+NLVG + +V+ D WNP
Sbjct: 647 YPYIQLDGSVAATKRTQMVNRFNNPELDEFIFLLSSKAGGCGLNLVGGANLVMFDPDWNP 706
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA+ R +R GQK+ H+Y +++ T+E +RQ +K+ + V D ND++
Sbjct: 707 ANDEQAMGRVWRDGQKKKCHIYRTLSAGTVEEKMYQRQIKKLELAGKVVEGGD--DNDES 764
Query: 586 TASEPLEDKILEEMAQLYNNPSET 609
T +DK L+E+ + ET
Sbjct: 765 T----FDDKQLKELCAYKDTACET 784
>gi|167378232|ref|XP_001734726.1| DNA repair and recombination protein RAD54B [Entamoeba dispar
SAW760]
gi|165903652|gb|EDR29108.1| DNA repair and recombination protein RAD54B, putative [Entamoeba
dispar SAW760]
Length = 884
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 166/564 (29%), Positives = 252/564 (44%), Gaps = 74/564 (13%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT--GLTLVF--L 124
K+ PHQ+ G +F++ + G LK GNGCI++ G GKT +TL++ L
Sbjct: 272 KLRPHQKAGVKFMYDCVMG------LKQGFR---GNGCILADGMGLGKTIQAVTLIWTLL 322
Query: 125 QAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKW-GIDIPFYNLNKPELSGKENNGAVALMD 182
+ P C+ V ++AP S++ WE EFKKW G P + SG + + A++ MD
Sbjct: 323 RQGPNGEPTCKKVMVVAPSSLVGNWENEFKKWLGDAAP--RVVGVSCSGAKTDQAISDMD 380
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
G ++ +I Y +L + EK+ GL + DEGH
Sbjct: 381 ---FGYAEIMVISYDQLR----------IHIDKIEKIKGW-----------GLLICDEGH 416
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N D +A++R+ T+RR+ILSGTP QN E +S V + L ++ E
Sbjct: 417 RLKNADIKSSQAVNRVPTKRRVILSGTPIQNELGEFYAMVSFVNPDVLGSLSAFKRIYEE 476
Query: 303 -ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQ 361
I K++ N R KEL F+ V Q+ LP VV
Sbjct: 477 PIMKSRQFDCTPEEKYAGNQRS----KELTRLTKLFILRRTSKVNQKYLPPKVQHVVFCS 532
Query: 362 PDEFQKR----LCKAVEGVKSFVELNYC-------VSLLSVHPSLLPQQFFESF-DVDSA 409
QK+ LC K E C + +S HP L+ Q F ++F +V
Sbjct: 533 LTPLQKKIYTALCTLKNKPKGKDEKKSCQFQILTALKKVSNHPWLI-QDFVKTFPEVLDG 591
Query: 410 KLARLKL--DPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
L + + D E KT FL LL EK+++ S Y E L I + + G
Sbjct: 592 ILPKGEALWDMELSGKTAFLAKLLAFLRKHKEKIVIVSNYTETLNFIAHHCK-----KCG 646
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG KR +N N+P I L S+KA G+NLVG + +V+ D WNP
Sbjct: 647 YPYIQLDGSVAATKRTQMVNRFNNPELDEFIFLLSSKAGGCGLNLVGGANLVMFDPDWNP 706
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA+ R +R GQK+ H+Y +++ T+E +RQ +K+ + V D ND++
Sbjct: 707 ANDEQAMGRVWRDGQKKKCHIYRTLSAGTVEEKMYQRQIKKLELAGKVVEGGD--DNDES 764
Query: 586 TASEPLEDKILEEMAQLYNNPSET 609
T +DK L+E+ + ET
Sbjct: 765 T----FDDKQLKELCIYKDTACET 784
>gi|350424065|ref|XP_003493677.1| PREDICTED: DNA repair and recombination protein RAD54-like [Bombus
impatiens]
Length = 748
Score = 175 bits (443), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 155/545 (28%), Positives = 250/545 (45%), Gaps = 91/545 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F+++ + G G GCI++ G GKT + L +K
Sbjct: 156 PHQREGVKFMYECVTG----------KRIEGAYGCIMADEMGLGKTLQCITLLWTLLKQG 205
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P +P +I+AP S++ W E KW +N +D +
Sbjct: 206 PEAKPLIEKAIIVAPSSLVKNWYNEIFKW----------------LKNRVQPLAIDGGNK 249
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDEGHT 243
L ++K Y + IL +SY RL +++ DE+ GL + DEGH
Sbjct: 250 TDIDTKLTGFMKTYGRRCINPILIISYETFRLHAQVLHQDEV--------GLVLCDEGHR 301
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK----- 298
+N + ++AL +K +RR++LSGTP QN+ E + + V Q + RK
Sbjct: 302 LKNSENQTYQALINLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGLLGTAQEFRKKFEIP 361
Query: 299 -----------SGREISKAKHASLISSIGRCANHRDDEKL-KELKEKIAPFVNVHKGTVL 346
+ R++++ + A L+S + +C R L K L K V + G L
Sbjct: 362 ILRGQDAAATDTERKLAQERLAELVSIVNKCLIRRTSALLSKYLPLKYELVVCIRMGK-L 420
Query: 347 QESLPGLRHSVVILQPDEFQKRL----CKAVEGVKSFVELNYCVSL--LSVHPSLLPQQF 400
Q L +Q D +K + + +G KSF L L L HP L+ +
Sbjct: 421 QTDLYN-----SFIQSDSVRKSMEENSANSKKG-KSFSTLAAITLLKKLCCHPDLVYDKI 474
Query: 401 FESFD--VDSAKL-----ARLKLDPEAGIKTRFLLILL---ELSTNEKVLVFSQYIEPLT 450
E D ++AKL + ++ PE K L LL + +TN+K+++ S Y + L
Sbjct: 475 LEKSDGFENAAKLMPPNYSTKEIMPELSGKLMVLDCLLASIKTTTNDKIVLVSNYTQTLD 534
Query: 451 LIMEQLRHR--FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGI 508
L E+L H+ +N+ + +DG +KKR + NDP+S I + S+KA G+
Sbjct: 535 L-FEKLCHKRCYNY------VRLDGTMTIKKRSKVVEKFNDPNSNDFIFMLSSKAGGCGL 587
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NL+GA+R+V+ D WNP + QA++R +R GQK++ +Y + + T+E +RQA K
Sbjct: 588 NLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKLCFIYRFLCTGTIEEKIFQRQAHKKA 647
Query: 569 WSNMV 573
S+ V
Sbjct: 648 LSSTV 652
>gi|19115202|ref|NP_594290.1| DNA repair protein [Schizosaccharomyces pombe 972h-]
gi|3123262|sp|P41410.2|RAD54_SCHPO RecName: Full=DNA repair protein rhp54; AltName: Full=RAD54 homolog
1
gi|2239180|emb|CAB10100.1| Rad54 homolog Rhp54 [Schizosaccharomyces pombe]
Length = 852
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 146/550 (26%), Positives = 235/550 (42%), Gaps = 104/550 (18%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ EG +F++K + G ID NGCI++ G GKT + L +K
Sbjct: 266 PHQIEGVKFLYKCVTGRID----------RCANGCIMADEMGLGKTLQCIALLWTLLKQS 315
Query: 132 PRC------RPVIIAPRSMLLTWEEEFKKW-GID--IPFYNLNKPELSGKENNGAVALMD 182
P+ + +I P S++ W E KW G D PF L GK + + +
Sbjct: 316 PQAGKPTIEKAIITCPSSLVKNWANELVKWLGKDAITPFI------LDGKSSKQELIM-- 367
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
L ++ ++ ++ +L SY V + I G+ + DEGH
Sbjct: 368 ---------ALQQWASVHGRQVTRPVLIASYETLRSYVEHLNNAEI-----GMLLCDEGH 413
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-------RQEFGEVLRT 295
+N D+ F AL ++ +RR+ILSGTP QN+ E + L+ RQEF +
Sbjct: 414 RLKNSDSLTFTALDKLNVQRRVILSGTPIQNDLSEYFSLLNFANPGLLGSRQEFRKNYEI 473
Query: 296 VRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRH 355
GR+ + D KL EL + + F+ +L + LP
Sbjct: 474 PILKGRDADGTEKDK----------ENGDAKLAELAKIVNRFIIRRTNDILSKYLPVKYE 523
Query: 356 SVVILQPDEFQ-------------------------------KRLCKAVEGVKSFVELNY 384
VV EFQ K++C + + +L
Sbjct: 524 HVVFCNLSEFQLSLYKHFITSPEINKILRGTGSQPLKAIGLLKKICNHPDLLNLTEDLEG 583
Query: 385 CVSLLSVHPSLLPQQFF-ESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFS 443
C +L P +P++ ++DS+ ++ + +L ++ T++K+++ S
Sbjct: 584 CEALFP--PGFIPRELRGRDRNIDSSLSGKM-------LVLERMLYQIKQETDDKIVLIS 634
Query: 444 QYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKA 503
Y L L + R R G + L +DG +V KRQ ++ NDP A + L S+KA
Sbjct: 635 NYTSTLDLFEQLCRAR-----GYKALRLDGTMNVNKRQRLVDTFNDPEKDAFVFLLSSKA 689
Query: 504 CCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQ 563
GINL+GA+R++L D WNP ++QA++R +R GQK+ VY I + T+E +RQ
Sbjct: 690 GGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQ 749
Query: 564 ARKVWWSNMV 573
+ K S+ V
Sbjct: 750 SHKQSLSSCV 759
>gi|452690|emb|CAA82750.1| DNA repair protein [Schizosaccharomyces pombe]
Length = 852
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 146/550 (26%), Positives = 235/550 (42%), Gaps = 104/550 (18%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ EG +F++K + G ID NGCI++ G GKT + L +K
Sbjct: 266 PHQIEGVKFLYKCVTGRID----------RCANGCIMADEMGLGKTLQCIALLWTLLKQS 315
Query: 132 PRC------RPVIIAPRSMLLTWEEEFKKW-GID--IPFYNLNKPELSGKENNGAVALMD 182
P+ + +I P S++ W E KW G D PF L GK + + +
Sbjct: 316 PQAGKPTIEKAIITCPSSLVKNWANELVKWLGKDAITPFI------LDGKSSKQELIM-- 367
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
L ++ ++ ++ +L SY V + I G+ + DEGH
Sbjct: 368 ---------ALQQWASVHGRQVTRPVLIASYETLRSYVEHLNNAEI-----GMLLCDEGH 413
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-------RQEFGEVLRT 295
+N D+ F AL ++ +RR+ILSGTP QN+ E + L+ RQEF +
Sbjct: 414 RLKNSDSLTFTALDKLNVQRRVILSGTPIQNDLSEYFSLLNFANPGLLGSRQEFRKNYEI 473
Query: 296 VRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRH 355
GR+ + D KL EL + + F+ +L + LP
Sbjct: 474 PILKGRDADGTEKDK----------ENGDAKLAELAKIVNRFIIRRTNDILSKYLPVKYE 523
Query: 356 SVVILQPDEFQ-------------------------------KRLCKAVEGVKSFVELNY 384
VV EFQ K++C + + +L
Sbjct: 524 HVVFCNLSEFQLSLYKHFITSPEINKILRGTGSQPLKAIGLLKKICNHPDLLNLTEDLEG 583
Query: 385 CVSLLSVHPSLLPQQFF-ESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFS 443
C +L P +P++ ++DS+ ++ + +L ++ T++K+++ S
Sbjct: 584 CEALFP--PGFIPRELRGRDRNIDSSLSGKM-------LVLERMLYQIKQETDDKIVLIS 634
Query: 444 QYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKA 503
Y L L + R R G + L +DG +V KRQ ++ NDP A + L S+KA
Sbjct: 635 NYTSTLDLFEQLCRAR-----GYKALRLDGTMNVNKRQRLVDTFNDPEKDAFVFLLSSKA 689
Query: 504 CCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQ 563
GINL+GA+R++L D WNP ++QA++R +R GQK+ VY I + T+E +RQ
Sbjct: 690 GGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQ 749
Query: 564 ARKVWWSNMV 573
+ K S+ V
Sbjct: 750 SHKQSLSSCV 759
>gi|307174075|gb|EFN64762.1| DNA repair and recombination protein RAD54-like [Camponotus
floridanus]
Length = 682
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 154/546 (28%), Positives = 250/546 (45%), Gaps = 84/546 (15%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F+++ + G ++N+ GCI++ G GKT + L +K
Sbjct: 91 PHQREGVKFMYECVTG----KRIENAY------GCIMADEMGLGKTLQCITLLWTLLKQG 140
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P +P +I+AP S++ W E KW L+ N A+ D K+
Sbjct: 141 PEAKPLIDKAIIVAPSSLVKNWYNEINKW-------------LNNIVNTLAI---DGGKK 184
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDEGHT 243
L+R++K Y + T IL +SY RL ++ DE+ GL + DEGH
Sbjct: 185 AEIDTKLLRFMKTYGGRCVTPILIISYETFRLHAHVLHQDEV--------GLVLCDEGHR 236
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKSGRE 302
+N + +++L +K +RR++LSGTP QN+ E + + V Q G RK
Sbjct: 237 LKNSENQTYQSLMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGLLGTAQEFRRKYETP 296
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQP 362
I + + A+ + A E+L +L + + +L + LP VV ++
Sbjct: 297 ILRGQDAAATDDQRKLAQ----ERLSDLVSVVNKCLIRRTSALLSKYLPLKHEFVVCIKM 352
Query: 363 DEFQKRLCKAV---EGVKSFVELN------------YCVSLLSV---HPSLLPQQFFESF 404
E Q RL K E +K +E + ++LL HP L+ + E
Sbjct: 353 GELQTRLYKNFIQSESIKRSMEEDDNPKKGGHLSALAAITLLKKLCNHPDLIYDKIMEKS 412
Query: 405 DVDSAKLARL--------KLDPEAGIKTRFLLILL---ELSTNEKVLVFSQYIEPLTLIM 453
+ K A+L +L PE K L LL + +TN+K+++ S Y + L L
Sbjct: 413 E-GFEKAAQLLPSHYSTKQLLPELSGKLMVLDCLLASIKTTTNDKIVLVSNYTQTLDLFE 471
Query: 454 EQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
+ R +N+ + +DG +KKR + N +S I + S+KA G+NL+G
Sbjct: 472 KLCNKRSYNY------VRLDGSMTIKKRSKVVENFNSDTSSDFIFMLSSKAGGCGLNLIG 525
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNM 572
A+R+V+ D WNP + QA++R +R GQK+ VY +++ T+E +RQA K S+
Sbjct: 526 ANRLVMFDPDWNPANDDQAMARVWRDGQKKTCFVYRFLSTGTIEEKIFQRQAHKKALSST 585
Query: 573 VFPSSD 578
V D
Sbjct: 586 VVDQED 591
>gi|340726376|ref|XP_003401535.1| PREDICTED: DNA repair and recombination protein RAD54-like [Bombus
terrestris]
Length = 746
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 155/545 (28%), Positives = 249/545 (45%), Gaps = 91/545 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F+++ + G G GCI++ G GKT + L +K
Sbjct: 154 PHQREGVKFMYECVTG----------KRIEGAYGCIMADEMGLGKTLQCITLLWTLLKQG 203
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P +P +I+AP S++ W E KW +N +D +
Sbjct: 204 PEAKPLIEKAIIVAPSSLVKNWYNEIFKW----------------LKNRVQPLAIDGGNK 247
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDEGHT 243
L ++K Y + IL +SY RL +++ DE+ GL + DEGH
Sbjct: 248 VDIDTKLTGFMKTYGRRCINPILIISYETFRLHAQVLHQDEV--------GLVLCDEGHR 299
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK----- 298
+N + ++AL +K +RR++LSGTP QN+ E + + V Q + RK
Sbjct: 300 LKNSENQTYQALINLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGLLGTAQEFRKKFEIP 359
Query: 299 -----------SGREISKAKHASLISSIGRCANHRDDEKL-KELKEKIAPFVNVHKGTVL 346
+ R++++ + A L+S + +C R L K L K V + G L
Sbjct: 360 ILRGQDAAATDTERKLAQERLAELVSIVNKCLIRRTSALLSKYLPLKYELVVCIRMGK-L 418
Query: 347 QESLPGLRHSVVILQPDEFQKRL----CKAVEGVKSFVELNYCVSL--LSVHPSLLPQQF 400
Q L +Q D +K + + +G KSF L L L HP L+ +
Sbjct: 419 QTDLYN-----SFIQSDSVRKSMEENSANSKKG-KSFSTLAAITLLKKLCCHPDLVYDKI 472
Query: 401 FESFD--VDSAKLA-----RLKLDPEAGIKTRFLLILL---ELSTNEKVLVFSQYIEPLT 450
E D ++AKL ++ PE K L LL + +TN+K+++ S Y + L
Sbjct: 473 LEKSDGFENAAKLMPPNYNTKEIMPELSGKLMVLDCLLASIKTTTNDKIVLVSNYTQTLD 532
Query: 451 LIMEQLRHR--FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGI 508
L E+L H+ +N+ + +DG +KKR + NDP+S I + S+KA G+
Sbjct: 533 L-FEKLCHKRCYNY------VRLDGTMTIKKRSKVVEKFNDPNSNDFIFMLSSKAGGCGL 585
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NL+GA+R+V+ D WNP + QA++R +R GQK++ +Y + + T+E +RQA K
Sbjct: 586 NLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKLCFIYRFLCTGTIEEKIFQRQAHKKA 645
Query: 569 WSNMV 573
S+ V
Sbjct: 646 LSSTV 650
>gi|390335885|ref|XP_783733.2| PREDICTED: DNA repair and recombination protein RAD54-like
[Strongylocentrotus purpuratus]
Length = 761
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 146/544 (26%), Positives = 252/544 (46%), Gaps = 88/544 (16%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W + G G GCI++ G GKT + +
Sbjct: 169 KVLRPHQREGVKFLWDCVTG----------RRIEGSFGCIMADEMGLGKTLQCVTLMWTL 218
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P +++AP S++ W E +KW L GK N A+ D
Sbjct: 219 LRQSPDCKPEIDKVIVVAPSSLVKNWYNEIRKW-------------LGGKVNPLAI---D 262
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFD 239
+ + L +++ + T IL +SY RL +++ E+ GL + D
Sbjct: 263 SGTKKEIDRNLDSFMRQQGRRTPTPILIISYETFRLHAEVLHKGEV--------GLVICD 314
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS 299
EGH +N + ++AL+ + +RR++LSGTP QN+ E + + V Q + +
Sbjct: 315 EGHRLKNCENQTYQALNGLPGKRRVLLSGTPIQNDLLEYFSLVHYVNQ-------GILGT 367
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNV----HKGTVLQESLPGLRH 355
+E K + ++ CA+ ++ ++ +E +++A VN ++L + LP
Sbjct: 368 AQEFKKNFESPILRGRDSCASDKEKQRGQEKLQQLAILVNKCIIRRTASLLAKYLPVKEE 427
Query: 356 SVVILQPDEFQKRLCKAVEGVKSFVELNYC-------VSLLSV---------HPSLLPQQ 399
VV + Q C + VK+ + C VS LS HP+L+ +
Sbjct: 428 QVVCCRLTXMQS--CIYQQYVKAM--MKECRMKTQGKVSTLSAITHLKKLCNHPALVYDK 483
Query: 400 FFESFDVDSAKLARL-------KLDPEAGIKTR---FLLILLELSTNEKVLVFSQYIEPL 449
S D L +L PE K + ++L + + S+++KV++ S Y + L
Sbjct: 484 CVSSKDGFHDMLQNFPPGYNNKQLRPELSGKMQVLDYILAITKTSSSDKVVLVSNYTQTL 543
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509
+ + R R G + +DG +KKR ++ N+P+S I + S+KA G+N
Sbjct: 544 DVFEQLCRLR-----GYLFVRLDGSMSIKKRAKVVDSFNNPNSPEFIFMLSSKAGGCGLN 598
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
L+GA+R+V+ D WNP + QA++R +R GQK+ +Y L+ + T+E +RQA K
Sbjct: 599 LIGANRLVMFDPDWNPANDDQAMARVWRDGQKKRCFIYRLLATGTIEEKIFQRQAHKKAL 658
Query: 570 SNMV 573
S+ V
Sbjct: 659 SSCV 662
>gi|118094595|ref|XP_422447.2| PREDICTED: DNA repair and recombination protein RAD54-like [Gallus
gallus]
Length = 804
Score = 173 bits (438), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 144/532 (27%), Positives = 240/532 (45%), Gaps = 71/532 (13%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F+W + S G +GCI++ G GKT + + ++
Sbjct: 215 PHQREGVKFLWDCV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQS 264
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P ++++P S++ W E +KW L G+ A+ +
Sbjct: 265 PDCKPEIEKAMVVSPSSLVRNWYNEVEKW-------------LGGRIQPLAIDGGSKEEI 311
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRN 246
R VG + L ++ + IL +SY F + + GL + DEGH +N
Sbjct: 312 DRKLVGFMNQRGL---RVPSPILIISYETFRLHAEALQKGSV-----GLVICDEGHRLKN 363
Query: 247 DDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKA 306
+ ++AL+ + T RR+++SGTP QN+ E SLV +L T ++ R
Sbjct: 364 SENQTYQALNSLNTPRRVLISGTPIQNDLLEY---FSLVHFVNSGILGTAQEFKRHFELP 420
Query: 307 KHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI--LQP-- 362
+ + +E+LKEL + + +L + LP VV L P
Sbjct: 421 ILKGRDADASEAERQKGEERLKELISIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQ 480
Query: 363 DEFQKRLCKAVEGVKSFVELNYCVSLLSV---------HPSLL-------PQQFFESFDV 406
E K K + V+ E VS LS HP+L+ + F + D+
Sbjct: 481 AELYKNFLKQAKPVEELKEGKINVSSLSSITSLKKLCNHPALIYDKCVEEEEGFMGALDL 540
Query: 407 DSAKLARLKLDPEAGIKT---RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWR 463
A + ++P+ K ++L + + ++N+KV++ S Y + L L + R+R
Sbjct: 541 FPAGYSTKSVEPQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFEKLCRNR---- 596
Query: 464 EGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDV 521
LY +DG +KKR + N PSS I + S+KA G+NL+GA+R+V+ D
Sbjct: 597 ---RYLYVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDP 653
Query: 522 VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ K S+ V
Sbjct: 654 DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCV 705
>gi|321465306|gb|EFX76308.1| RAD54, DNA repair and recombination protein [Daphnia pulex]
Length = 748
Score = 172 bits (437), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 148/551 (26%), Positives = 241/551 (43%), Gaps = 86/551 (15%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F++ + G GCI++ G GKT + L
Sbjct: 151 KVLRPHQREGVKFMYDCVTG----------LCIENNYGCIMADEMGLGKTLQCITLLWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
+K P C+P +I++P S++ W+ E KW LSG+ N ++D
Sbjct: 201 LKQGPDCKPLIAKGIIVSPSSLVKNWQNEINKW-------------LSGRVN---TLVID 244
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ + L ++ + ++ T +L +SY F I GL + DEGH
Sbjct: 245 SGSKDEIDRNLNGFIHTHGRRVVTPVLIISYETFRLHAHALHKGEI-----GLVLCDEGH 299
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ-------EFGEVLRT 295
+N + ++AL + +RR++LSGTP QN+ E + L V Q EF + T
Sbjct: 300 RLKNSENQTYQALVALNCKRRVLLSGTPIQNDLLEYFSLLHFVNQGILGTAQEFKKRFET 359
Query: 296 VRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRH 355
GR+ + + +LKEL + + + +L + LP
Sbjct: 360 PILRGRDADATEET----------QKKGQTQLKELADLVNKCIIRRTSALLTKYLPVKIE 409
Query: 356 SVVILQPDEFQKRLCKAV---EGVKS-------------FVELNYCVSL--LSVHPSLLP 397
VV ++ Q + K V E VKS L +L L HP L+
Sbjct: 410 LVVCIKLSPVQASIYKKVVASEAVKSKMREANEKPSKSSMTALAAITNLKKLCSHPELVY 469
Query: 398 QQ-------FFESFDVDSAKLARLKLDPEAGIKTRFL---LILLELSTNEKVLVFSQYIE 447
++ F + + A KL E K L L +++ +TN+K+++ S Y +
Sbjct: 470 EKCQSGVDGFEGTLSLFPATFDPRKLQTELSGKLCVLDCILAMVKSTTNDKIVLISNYTQ 529
Query: 448 PLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEG 507
L L + R R + +DG +KKR + NDP+S + L S+KA G
Sbjct: 530 TLDLFEKLCRMR-----SYPCVRLDGSMSIKKRAKIVEHFNDPASSDFVFLLSSKAGGCG 584
Query: 508 INLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567
+NL+GA+R+V+ D WNP + QA++R +R GQK+ +Y L+++ T+E +RQA K
Sbjct: 585 LNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFIYRLLSTGTIEEKIFQRQAHKK 644
Query: 568 WWSNMVFPSSD 578
S+ V + D
Sbjct: 645 ALSSCVVDNED 655
>gi|326925324|ref|XP_003208867.1| PREDICTED: DNA repair and recombination protein RAD54-like
[Meleagris gallopavo]
Length = 792
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 144/532 (27%), Positives = 240/532 (45%), Gaps = 71/532 (13%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F+W + S G +GCI++ G GKT + + ++
Sbjct: 203 PHQREGVKFLWDCV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQS 252
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P ++++P S++ W E +KW L G+ A+ +
Sbjct: 253 PDCKPEIEKAMVVSPSSLVRNWYNEVEKW-------------LGGRIQPLAIDGGSKEEI 299
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRN 246
R VG + L ++ + IL +SY F + + GL + DEGH +N
Sbjct: 300 DRKLVGFMNQRGL---RVPSPILIISYETFRLHAEALQKGTV-----GLVICDEGHRLKN 351
Query: 247 DDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKA 306
+ ++AL+ + T RR+++SGTP QN+ E SLV +L T ++ R
Sbjct: 352 SENQTYQALNSLNTPRRVLISGTPIQNDLLEY---FSLVHFVNSGILGTAQEFKRHFELP 408
Query: 307 KHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI--LQP-- 362
+ + +E+LKEL + + +L + LP VV L P
Sbjct: 409 ILKGRDADASEAERQKGEERLKELISIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQ 468
Query: 363 DEFQKRLCKAVEGVKSFVELNYCVSLLSV---------HPSLL-------PQQFFESFDV 406
E K K + V+ E VS LS HP+L+ + F + D+
Sbjct: 469 AELYKNFLKQAKPVEELKEGKINVSSLSSITSLKKLCNHPALIYDKCVEEEEGFMGALDL 528
Query: 407 DSAKLARLKLDPEAGIKT---RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWR 463
A + ++P+ K ++L + + ++N+KV++ S Y + L L + R+R
Sbjct: 529 FPAGYSTKSVEPQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFEKLCRNR---- 584
Query: 464 EGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDV 521
LY +DG +KKR + N PSS I + S+KA G+NL+GA+R+V+ D
Sbjct: 585 ---RYLYVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDP 641
Query: 522 VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ K S+ V
Sbjct: 642 DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCV 693
>gi|332024911|gb|EGI65099.1| DNA repair and recombination protein RAD54-like protein [Acromyrmex
echinatior]
Length = 681
Score = 172 bits (436), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 158/545 (28%), Positives = 252/545 (46%), Gaps = 83/545 (15%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F+++ + G ++N+ GCI++ G GKT + L +K
Sbjct: 91 PHQREGVKFMYECVTG----KRIENAY------GCIMADEMGLGKTLQCITLLWTLLKQG 140
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P +P VI+AP S++ W E KW L+ N A+ D K+
Sbjct: 141 PEAKPLIEKAVIVAPSSLVKNWYNEINKW-------------LNNMVNTLAI---DGGKK 184
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDEGHT 243
LIR++K Y + T IL +SY RL ++ DE+ GL + DEGH
Sbjct: 185 ADIDTQLIRFMKTYG-RCVTPILIISYETFRLHAHVLHQDEV--------GLVLCDEGHR 235
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKSGRE 302
+N + +++L +K +RR++LSGTP QN+ E + + V Q G RK
Sbjct: 236 LKNSENQTYQSLMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGLLGTAQEFRRKYETP 295
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQP 362
I + + A+ + A E+L +L + + +L + LP VV ++
Sbjct: 296 ILRGQDAAATDAERTVAQ----ERLSDLVSIVNKCLIRRTSALLSKYLPLKHELVVCIKM 351
Query: 363 DEFQKRLCKAV---EGVKSFVELN------------YCVSLLSV---HPSLLPQQFFESF 404
E Q +L K + +K +E N ++LL HP L+ + E
Sbjct: 352 GELQTQLYKNFIQSDSIKRSMEENDNPKKTGSLSALAAITLLKKLCNHPDLIYDKIKEKA 411
Query: 405 DVDSAKLARL--------KLDPEAGIKTRFLLILL---ELSTNEKVLVFSQYIEPLTLIM 453
D K A L +L PE K L LL + +TN+K+++ S Y + L L
Sbjct: 412 D-GLEKAASLLPPNYSAKELMPELSGKLMVLDCLLASIKTTTNDKIVLVSNYTQTLDL-F 469
Query: 454 EQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
E+L H+ ++ + +DG +KKR ++ N SS I + S+KA G+NL+GA
Sbjct: 470 EKLCHKRSY----NYVRLDGTMTIKKRAKVVDNFNSDSSNDFIFMLSSKAGGCGLNLIGA 525
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQK+ VY +++ T+E +RQA K S+ V
Sbjct: 526 NRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGTIEEKIFQRQAHKKALSSTV 585
Query: 574 FPSSD 578
D
Sbjct: 586 VDQED 590
>gi|51316190|sp|O12944.1|RAD54_CHICK RecName: Full=DNA repair and recombination protein RAD54-like;
AltName: Full=Putative recombination factor GdRad54;
AltName: Full=RAD54 homolog
gi|1905887|gb|AAB54115.1| putative recombination factor GdRad54 [Gallus gallus]
Length = 733
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 144/532 (27%), Positives = 240/532 (45%), Gaps = 71/532 (13%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F+W + S G +GCI++ G GKT + + ++
Sbjct: 144 PHQREGVKFLWDCV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQS 193
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P ++++P S++ W E +KW L G+ A+ +
Sbjct: 194 PDCKPEIEKAMVVSPSSLVRNWYNEVEKW-------------LGGRIQPLAIDGGSKEEI 240
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRN 246
R VG + L ++ + IL +SY F + + GL + DEGH +N
Sbjct: 241 DRKLVGSMNQRGL---RVPSPILIISYETFRLHAEALQKGSV-----GLVICDEGHRLKN 292
Query: 247 DDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKA 306
+ ++AL+ + T RR+++SGTP QN+ E SLV +L T ++ R
Sbjct: 293 SENQTYQALNSLNTPRRVLISGTPIQNDLLEY---FSLVHFVNSGILGTAQEFKRHFELP 349
Query: 307 KHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI--LQP-- 362
+ + +E+LKEL + + +L + LP VV L P
Sbjct: 350 ILKGRDADASEAERQKGEERLKELISIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQ 409
Query: 363 DEFQKRLCKAVEGVKSFVELNYCVSLLSV---------HPSLL-------PQQFFESFDV 406
E K K + V+ E VS LS HP+L+ + F + D+
Sbjct: 410 AELYKNFLKQAKPVEELKEGKINVSSLSSITSLKKLCNHPALIYDKCVEEEEGFMGALDL 469
Query: 407 DSAKLARLKLDPEAGIKT---RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWR 463
A + ++P+ K ++L + + ++N+KV++ S Y + L L + R+R
Sbjct: 470 FPAGYSTKSVEPQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFEKLCRNR---- 525
Query: 464 EGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDV 521
LY +DG +KKR + N PSS I + S+KA G+NL+GA+R+V+ D
Sbjct: 526 ---RYLYVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDP 582
Query: 522 VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ K S+ V
Sbjct: 583 DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCV 634
>gi|242021397|ref|XP_002431131.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212516380|gb|EEB18393.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 745
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 153/545 (28%), Positives = 249/545 (45%), Gaps = 92/545 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F++ + G GCI++ G GKT + + +K
Sbjct: 151 PHQREGVKFMYDCVTG----------VKIENAYGCIMADEMGLGKTLQCITLMWTLLKQG 200
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P +++AP S++ W E KW L G+ N A+ D+ +
Sbjct: 201 PDCKPLIEKAIVVAPSSLVKNWYNEINKW-------------LKGRVNALAI---DSGSK 244
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDEGHT 243
L ++ YS + IL +SY RL K++ E+ GL + DEGH
Sbjct: 245 DDIDRNLQSFMNTYSRRPVNPILIISYETFRLHVKVLHKGEV--------GLVLCDEGHR 296
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREI 303
+N + ++AL + +RR++LSGTP QN+ E + + V Q + + E
Sbjct: 297 LKNHENQTYQALMGLNAKRRVLLSGTPIQNDLLEYFSLIHFVNQ-------GILGTAAEF 349
Query: 304 SKAKHASLISSIGRCANHRDDEKLK--ELKEKIAPFVNV----HKGTVLQESLPGLRHSV 357
K ++ G+ AN +E+ K E E++A VN +L + LP V
Sbjct: 350 RKKFEIPILR--GQDANSTIEERKKGQECLEQMAALVNRCLIRRTAALLSKYLPVKTEQV 407
Query: 358 VILQPDEFQKRLCK---AVEGVK-------------SFVELNYCVSL--LSVHPSLLPQQ 399
+ + QK+L + A + +K S L+ +L L HP L+ +
Sbjct: 408 ICITLTGLQKQLYEDFIASDALKKTVREEKNSKKGMSLTALSAITTLKKLCNHPDLVYEN 467
Query: 400 FF---ESFDVDSAKLARLKLD-----PEAGIKTRFL---LILLELSTNEKVLVFSQYIEP 448
E F+ ++ K K D PE K FL L L++ +TN+K+++ S Y +
Sbjct: 468 IMKQTEGFE-NALKYLPEKYDIKNVRPEMSGKLMFLDTLLALIKATTNDKIVLVSNYTQT 526
Query: 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGI 508
L L + R R + + +DG +KKR + NDP S+ I + S+KA G+
Sbjct: 527 LDLFEKLSRFR-----NYQYVRLDGSMTIKKRGKVVEKFNDPESKDFIFMLSSKAGGCGL 581
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NL+GA+R+V+ D WNP + QA++R +R GQK+ +Y L+++ T+E +RQA K
Sbjct: 582 NLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFIYRLLSTGTIEEKIFQRQAHKKA 641
Query: 569 WSNMV 573
S+ V
Sbjct: 642 LSSTV 646
>gi|320169825|gb|EFW46724.1| DNA repair protein RAD54 [Capsaspora owczarzaki ATCC 30864]
Length = 941
Score = 172 bits (435), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 154/547 (28%), Positives = 243/547 (44%), Gaps = 98/547 (17%)
Query: 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP 132
HQREG +F++ + G I G GCI++ G GKT + + ++
Sbjct: 264 HQREGVKFLYDAVMGDI----------VEGYQGCIMADEMGLGKTLQCVSLIWTLLRQGR 313
Query: 133 RCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG 187
P VII P S++ W E +KW L GK + V D +
Sbjct: 314 NGMPTIEKAVIICPASLVKNWHNELQKW-------------LQGKVQSLPV---DGGDKE 357
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPRN 246
+ + L ++ + IL +SY F V IL P GL + DEGH +N
Sbjct: 358 KIESNLNNFINCTGRLLNQPILIISYETFRIHVD------ILASKPVGLVICDEGHRLKN 411
Query: 247 DDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-------RQEFGEVLRTVRKS 299
+ F+AL+++KT RR++LSGTP QN+ E + L + EF
Sbjct: 412 AQSQTFQALNQLKTDRRVLLSGTPIQNDLTEYFSLLLFTNPGLLGTQAEFRRRFENPILR 471
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI 359
GRE S I + EKL+EL + + F+ ++L + LP VV
Sbjct: 472 GREASATDKEKEIGT----------EKLQELAKIVNKFIIRRTNSLLSKYLPTKVDQVVC 521
Query: 360 LQPDEFQKRLCKAVEGVKSFVEL--------NYCVSLLSV--------HPSLLPQQFFES 403
++ Q +L +A+ K+ +L SL S+ HP L+ + E+
Sbjct: 522 IKLSPLQTQLYEALIKSKAVKKLIASSASDGQTAASLGSITLLKKLCNHPDLIYEACQEN 581
Query: 404 FDVDSAKLARLKLDPEAGIKTR-----------------FLLILLELSTNEKVLVFSQYI 446
F +L L PE G+K + +L ++ +TN++V++ S Y
Sbjct: 582 F----RELLPL-FPPEYGVKNKRGRTFNPAHSGKFQVLDTMLAYVKSTTNDRVVLISNYT 636
Query: 447 EPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCE 506
+ + L + R R G + +DG VK RQ ++ N+PSS + L S+KA
Sbjct: 637 QTIDLFEDLARLR-----GYRFVRLDGTLSVKARQKLVDEFNNPSSNVFLFLLSSKAGGC 691
Query: 507 GINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
GINL+G +R+VL D WNP + QA++R +R GQK+ V++Y + + T+E +RQA K
Sbjct: 692 GINLIGGNRLVLFDPDWNPASDGQAMARVWRDGQKKKVYLYRFLGTGTIEEKIFQRQAHK 751
Query: 567 VWWSNMV 573
+ S+ V
Sbjct: 752 MALSSCV 758
>gi|241950361|ref|XP_002417903.1| SWI/SNF family member, DNA-dependent ATPase, DNA repair and
recombination protein, putative [Candida dubliniensis
CD36]
gi|223641241|emb|CAX45621.1| SWI/SNF family member, DNA-dependent ATPase, DNA repair and
recombination protein, putative [Candida dubliniensis
CD36]
Length = 839
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 156/538 (28%), Positives = 249/538 (46%), Gaps = 69/538 (12%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ G +F+++ AG ID GCI++ G GKT L +
Sbjct: 245 KILRPHQIAGVKFLYRCTAGLID----------ARAKGCIMADEMGLGKTLQCLALMWTL 294
Query: 128 MKLHPRCR-----PVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ PR + +I+ P S++ W E KW + L S K ++ AL
Sbjct: 295 LRQSPRGKRTIEKCIIVCPSSLVRNWANEIVKWLGEGALTPLAVDGKSTKSSDLGTALQQ 354
Query: 183 -NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
+ +GR ++R V L +SY + V D+L+G + GL + DEG
Sbjct: 355 WSTAQGRN---IVRPV-----------LIISYETLRRNV--DKLAGTEV---GLMLADEG 395
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301
H +N D+ F AL+ ++ RR+ILSGTP QN+ E + L+ + RK+
Sbjct: 396 HRLKNGDSLTFTALNSLRCERRVILSGTPIQNDLSEYFSLLNFANPGYLGTRNEFRKNYE 455
Query: 302 EISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQ 361
S + R + D+KL EL + ++ F+ +L + LP V+
Sbjct: 456 NAILRGRDSTATDEERA---KGDKKLGELSQMVSKFIIRRTNDILSKYLPIKYEYVLFTG 512
Query: 362 PDEFQKRLC----------KAVEGVKSF-VELNYCVSLLSVHPSLL--PQQFFESFDVDS 408
QK L K ++G+ S ++ + L HP LL P S D+
Sbjct: 513 LSPMQKTLYNHFITSPEIKKLIKGIGSQPLKAIGMLKKLCNHPDLLDLPDDIEGSADLIP 572
Query: 409 AKLARLKLDPEAG----IKTRF---LLIL------LELSTNEKVLVFSQYIEPLTLIMEQ 455
AG I+T F LIL + T++K+++ S Y + L LI +
Sbjct: 573 DDYQSSIAGGSAGRNREIQTWFSGKFLILERFLRKINKETDDKIVLISNYTQTLDLIEKM 632
Query: 456 LRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515
R++ + G VL +DG ++ KRQ ++ NDP+ I L S+KA GINL+GA+R
Sbjct: 633 CRYK---KYG--VLRLDGTMNINKRQKLVDKFNDPNGPEFIFLLSSKAGGCGINLIGANR 687
Query: 516 VVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+VL+D WNP ++QA++R +R GQK+ +Y LI++ T+E +RQ+ K+ S+ V
Sbjct: 688 LVLIDPDWNPASDQQALARVWRDGQKKDCFIYRLISTGTIEEKIFQRQSMKMSLSSCV 745
>gi|344231402|gb|EGV63284.1| hypothetical protein CANTEDRAFT_106747 [Candida tenuis ATCC 10573]
Length = 817
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 153/545 (28%), Positives = 247/545 (45%), Gaps = 82/545 (15%)
Query: 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLV 122
PR + K + PHQ EG +F+++ +G ID GCI++ G GKT +
Sbjct: 228 PR-LAKILRPHQVEGVKFLYRCTSGLID----------PKAKGCIMADEMGLGKTLQCIA 276
Query: 123 FLQAYMKLHPRCRP-----VIIAPRSMLLTWEEEFKKW---GIDIPFYNLNKPELSGKEN 174
+ +K PR R +I+ P S++ W E KW G+ P
Sbjct: 277 LMWTLLKQSPRGRKTISKCIIVCPSSLVRNWANEIIKWLGEGVLTPL------------- 323
Query: 175 NGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLSYRLFEKLVSGDELSGI 228
+D + ++G L W + +G +L +SY + V D+LSG
Sbjct: 324 -----AIDGKSVKNSEIG----DSLKQWSVASGRNVVRPVLIISYETLRRHV--DKLSGT 372
Query: 229 LLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE 288
+ GL + DEGH +N D+ F AL+ ++ RR+ILSGTP QN+ E + L+
Sbjct: 373 EV---GLMLADEGHRLKNGDSLTFNALNELRCERRVILSGTPIQNDLSEYFSLLNFSNPN 429
Query: 289 FGEVLRTVRKS-GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQ 347
+ R++ +I + + A D+KL EL ++ F+ +L
Sbjct: 430 YLGTRNDFRRNYENDILRGRDADASDK----ERESGDKKLNELTTLVSRFIIRRTNDILS 485
Query: 348 ESLPGLRHSVVILQPDEFQKRLCK---AVEGVKSFVELNYCVSLLSV--------HPSLL 396
+ LP V+ + Q +L +K ++ + L ++ HP+LL
Sbjct: 486 KYLPIKYEHVIFVNLSPLQTKLYNFFITSPEIKKLLKGHGSQPLKAIGLLKKLCNHPNLL 545
Query: 397 --PQ-----QFFESFDVDSAKL-ARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEP 448
P+ Q D D K + L + I RFL L T +K+++ S Y +
Sbjct: 546 NLPEDLDGCQELMPDDYDYKKREVQTWLSGKFSILERFLY-KLHHETGDKIVLISNYTQT 604
Query: 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGI 508
L LI R + R G L +DG ++ KRQ ++ NDP + I L S+KA GI
Sbjct: 605 LDLIERMCRVK---RYGN--LRLDGTMNINKRQKLVDRFNDPDGKEFIFLLSSKAGGCGI 659
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NL+GA+R+VL+D WNP ++QA++R +R GQK+ +Y I++ T+E +RQ+ K+
Sbjct: 660 NLIGANRLVLIDPDWNPAADQQALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKLS 719
Query: 569 WSNMV 573
S+ V
Sbjct: 720 LSSCV 724
>gi|307203835|gb|EFN82771.1| DNA repair and recombination protein RAD54-like [Harpegnathos
saltator]
Length = 679
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 154/545 (28%), Positives = 251/545 (46%), Gaps = 82/545 (15%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F+++ + G D GCI++ G GKT + L +K
Sbjct: 88 PHQREGVKFMYECVTGKRIED----------AYGCIMADEMGLGKTLQCITLLWTLLKQG 137
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL-MDNRK 185
P +P +I+AP S++ W E KW NN AL +D K
Sbjct: 138 PEAKPLIDKAIIVAPSSLVKNWYNEIYKW-----------------LNNRVSALAIDGGK 180
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ LI ++K Y+ + IL +SY RL ++ +E+ GL + DEGH
Sbjct: 181 KKDIDTKLISFMKTYNGRCVYPILIISYETFRLHAHVLHQNEV--------GLVLCDEGH 232
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKSGR 301
+N + +++L +K +RR++LSGTP QN+ E + + V Q G RK
Sbjct: 233 RLKNSENQTYQSLMGLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGLLGTAQEFRRKFET 292
Query: 302 EISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQ 361
I + + A + A +E+L +L + + +L + LP VV ++
Sbjct: 293 PILRGQDAEATDEERKLA----EERLSDLVSVVNKCLIRRTSALLSKYLPLKHELVVCIK 348
Query: 362 PDEFQKRLCKAV---EGVKSFVE----------LNYCVSL-----LSVHPSLLPQQFFES 403
E Q RL K+ + +K +E L+ ++ L HP L+ + E
Sbjct: 349 MGELQTRLYKSFIHSDSIKKSMEDSDNSKKGGSLSALAAITLLKKLCNHPDLIYDKIKER 408
Query: 404 FD--VDSAKL-----ARLKLDPEAGIKTRFLLILL---ELSTNEKVLVFSQYIEPLTLIM 453
D ++A+L + +L P+ K L LL + +TN+K+++ S Y + L L
Sbjct: 409 SDGFENAARLLPANYSTKELLPDLSGKLMVLDCLLASIKTTTNDKIVLVSNYTQTLDL-F 467
Query: 454 EQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
E+L H+ G + +DG +KKR ++ N SS I + S+KA G+NL+GA
Sbjct: 468 EKLCHK----RGYNYVRLDGTMTIKKRSKVVDNFNSESSSDFIFMLSSKAGGCGLNLIGA 523
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQK+ VY +++ T+E +RQA K S+ V
Sbjct: 524 NRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLSTGTIEEKIFQRQAHKKALSSTV 583
Query: 574 FPSSD 578
D
Sbjct: 584 VDQED 588
>gi|308198272|ref|XP_001386950.2| protein required for X-ray damage repair, mitotic recombination,
and full meiotic recombination. mRNA increases in
meiosis [Scheffersomyces stipitis CBS 6054]
gi|149388940|gb|EAZ62927.2| protein required for X-ray damage repair, mitotic recombination,
and full meiotic recombination. mRNA increases in
meiosis [Scheffersomyces stipitis CBS 6054]
Length = 821
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 156/560 (27%), Positives = 249/560 (44%), Gaps = 115/560 (20%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ G +F+++ AG ID GCI++ G GKT + +
Sbjct: 230 KILRPHQIAGVKFLYRCTAGLID----------ARAKGCIMADEMGLGKTLQCIALMWTL 279
Query: 128 MKLHPRCR-----PVIIAPRSMLLTWEEEFKKW---GIDIPFY----NLNKPELSGKENN 175
+K PR + +I+ P S++ W E KW G+ P + EL G
Sbjct: 280 LKQSPRGKRTIEKCIIVCPSSLVRNWANEIIKWLGEGVLTPLAVDGKSTKNSELGGALQQ 339
Query: 176 GAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGL 235
+VA RGR V +L +SY + V D+L+G + GL
Sbjct: 340 WSVA------RGRNIV--------------RPVLIISYETLRRNV--DKLAGTEV---GL 374
Query: 236 FVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRT 295
+ DEGH +N D+ F AL+ ++ RR+ILSGTP QN+ E + L+ +
Sbjct: 375 MLADEGHRLKNGDSLTFTALNSLRCERRVILSGTPIQNDLSEYFSLLNFANPGYLGTRND 434
Query: 296 VRKS-GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLR 354
+K+ +I K + A DEKL EL + ++ F+ +L + LP ++
Sbjct: 435 FKKNFENKILKGRDAIATDK----EREVGDEKLAELSQLVSKFIIRRTNDILSKYLP-VK 489
Query: 355 HSVVI------LQPDEFQ--------KRLCKAV--------------------------- 373
+ V+ +Q D ++ K+L K V
Sbjct: 490 YEYVLFTGLSPMQKDLYRHFITSPEIKKLLKGVGSQPLKAIGMLKKLCNHPDLLNLPDDF 549
Query: 374 EGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL 433
EG + F+ +YC S+ S + Q ++ S K L+ RFL +
Sbjct: 550 EGSEKFIPEDYCSSIGSGGRNREVQSWY------SGKFMILE---------RFLY-QIRS 593
Query: 434 STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQ 493
TN+K+++ S Y + L LI RH+ + G L +DG + KRQ ++ NDP
Sbjct: 594 QTNDKIVLISNYTQTLDLIERMCRHK---KYGS--LRLDGTLSINKRQKLVDKFNDPEGN 648
Query: 494 ARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553
I L S+KA GINL+GA+R++L+D WNP ++QA++R +R GQK+ +Y I++
Sbjct: 649 EFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQKKDCFIYRFISTG 708
Query: 554 TLEWDKLRRQARKVWWSNMV 573
T+E +RQ+ K+ S+ V
Sbjct: 709 TIEEKIFQRQSMKMSLSSCV 728
>gi|449675767|ref|XP_002170465.2| PREDICTED: DNA repair and recombination protein RAD54-like, partial
[Hydra magnipapillata]
Length = 716
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 148/542 (27%), Positives = 248/542 (45%), Gaps = 90/542 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F++ + G D GCI++ G GKT + L ++
Sbjct: 126 PHQREGVKFLYDCVVGNRIKDNF----------GCIMADEMGLGKTLQCITVLWTLLRQS 175
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P +P +I+AP S++ W++E +KW L G+ + A+ D+ +
Sbjct: 176 PSGKPEINKAIIVAPASLVKNWDKEIEKW-------------LKGRVHTLAI---DSGSK 219
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRN 246
L ++ + T IL +SY F S + GL + DEGH +N
Sbjct: 220 SEIDDKLSSFMSQQQVRAPTPILIISYETFRLHTDVLHRSPV-----GLVICDEGHRLKN 274
Query: 247 DDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKA 306
+ ++AL+ +KT++RI+LSGTP QN+ E SLV G +L TV + R+
Sbjct: 275 LENQTYQALNLLKTKKRILLSGTPIQNDLLEY---FSLVHFVNGGMLGTVSEFRRKF--- 328
Query: 307 KHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQP 362
A ++ + D +EKL EL ++ + +L + LP +V+ +
Sbjct: 329 -EAPILRGRDGAGSESDQKIGEEKLAELLSIVSKCIIRRTSAILSKYLPVKTEQIVMCKL 387
Query: 363 DEFQKRLCKAVEGVK-----------------SFVELNYCVSLLSVHPSLL--PQQFFES 403
Q +L KA K +F+ L + L HP L+ Q+ E
Sbjct: 388 TTLQSKLYKAFVNSKVARMQLQADAKLNASSLAFINL---IKKLCNHPELIYDKQKLCE- 443
Query: 404 FDVDSAKLARLKLDPEAGIKT------------RFLLILLELSTNEKVLVFSQYIEPLTL 451
D+ + + P K F+L L++ ++N+KV++ S Y + + L
Sbjct: 444 ---DNLQEVLNEFPPNFNTKVFASDLSGKMQVLDFILALVKSTSNDKVVLVSNYTQTIDL 500
Query: 452 IMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLV 511
+ R R G + + +DG +KKR ++ NDP+S + + S+KA G+NL+
Sbjct: 501 FEKLSRLR-----GYQYVRLDGSMSIKKRMKVVDRFNDPNSNDFLFMLSSKAGGCGLNLI 555
Query: 512 GASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSN 571
GA+R+V+ D WNP + QA++R +R GQK+ V +Y L+++ T+E L+RQ K S+
Sbjct: 556 GANRLVMFDPDWNPANDDQAMARVWRDGQKKEVFIYRLLSTGTIEEKILQRQTHKKALSS 615
Query: 572 MV 573
V
Sbjct: 616 CV 617
>gi|449266391|gb|EMC77444.1| DNA repair and recombination protein RAD54-like protein, partial
[Columba livia]
Length = 742
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 141/532 (26%), Positives = 239/532 (44%), Gaps = 71/532 (13%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F+W + S G +GCI++ G GKT + + ++
Sbjct: 153 PHQREGVKFLWDCV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQS 202
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P ++++P S++ W E +KW L G+ A+ +
Sbjct: 203 PDCKPEIEKAMVVSPSSLVRNWYNEVEKW-------------LGGRIQPLAIDGGSKEEI 249
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRN 246
R VG + L ++ + IL +SY F + + GL + DEGH +N
Sbjct: 250 DRKLVGFMNQRGL---RVPSPILIISYETFRLHAEALQKGSV-----GLVICDEGHRLKN 301
Query: 247 DDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKA 306
+ ++AL+ + T RR+++SGTP QN+ E SLV +L T ++ R
Sbjct: 302 SENQTYQALNSLNTPRRVLISGTPIQNDLLEY---FSLVHFVNSGILGTAQEFKRHFEIP 358
Query: 307 KHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQ 366
+ H+ +E+LKEL + + +L + LP VV + Q
Sbjct: 359 ILKGRDADASEAERHKGEERLKELISIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQ 418
Query: 367 KRL-------CKAVEGVKS------FVELNYCVSLLSVHPSLLPQQ-------FFESFDV 406
L K VE +K + + L HP+L+ + F + D+
Sbjct: 419 AELYKNFLKQAKPVEELKEGKISVSSLSSITSLKKLCNHPALIHDKCVEEEEGFMGALDL 478
Query: 407 DSAKLARLKLDPEAGIKT---RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWR 463
A + ++P+ K ++L + + ++N+KV++ S Y + L L + R+R
Sbjct: 479 FPAGYSTKSVEPQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFEKLCRNR---- 534
Query: 464 EGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDV 521
LY +DG +KKR + N PSS I + S+KA G+NL+GA+R+V+ D
Sbjct: 535 ---RYLYVRLDGTMSIKKRAKIVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDP 591
Query: 522 VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ K S+ V
Sbjct: 592 DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCV 643
>gi|241640781|ref|XP_002410926.1| conserved hypothetical protein [Ixodes scapularis]
gi|215503624|gb|EEC13118.1| conserved hypothetical protein [Ixodes scapularis]
Length = 654
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 147/527 (27%), Positives = 235/527 (44%), Gaps = 54/527 (10%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F+W + G G GCI++ G GKT + L ++
Sbjct: 86 PHQREGVKFMWDCVTG----------KQIEGSYGCIMADEMGLGKTLQCITLLWTLLRQS 135
Query: 132 PR------CRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRK 185
P + VI+ P S++ W E KW L S +G+ +D
Sbjct: 136 PEFATPTITKAVIVTPSSLVKNWHNELSKW--------LGDRVRSVAIESGSKTEIDAHI 187
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPR 245
RG ++ + ++ T +L LSY F +L + SG + G + DEGH +
Sbjct: 188 RG--------FMAAFGRRVCTPVLILSYETF-RLHANALQSGEV----GCVICDEGHRLK 234
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N + + AL+ ++T+RRI+LSGTP QN+ E SL+ +L T ++ R+
Sbjct: 235 NCENQTYHALNGLRTKRRILLSGTPIQNDLLEY---FSLIHFVNAGILGTAQEFKRKFEL 291
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
S S R E+L+EL + + +L LP +V
Sbjct: 292 PILKSRDSCSSDAERARGQERLEELITIVNRCLIRRTNALLSRYLPVKTEHIVCCAMTPI 351
Query: 366 QKRLCKAVEGVKSFVELNYCVSL--LSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIK 423
Q+ + ++ L L L HPSL+ + F +S A + PE K
Sbjct: 352 QREWYDRLASMRGGTPLATITLLKKLCNHPSLVRECFPDSGPTFKAS----TVMPELSGK 407
Query: 424 TRFLLILLEL---STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKR 480
+ L LL + +T++KV++ S Y + L + R R G +DG +KKR
Sbjct: 408 LKVLDCLLAIIRSTTDDKVVLISNYTQTLDVFERLCRER-----GYGFFRLDGSMTIKKR 462
Query: 481 QSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQ 540
+ N PSS + S+KA G+NL+GA+R+V+ D WNP + QA++R +R GQ
Sbjct: 463 AKIVAAFNVPSSPEFAFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDAQAMARIWRDGQ 522
Query: 541 KRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTA 587
K+ +VY L++S ++E L+RQ K S+ V S + + ++T
Sbjct: 523 KKPCYVYRLVSSGSIEEKILQRQTHKKALSSCVVDSEEDCESLESTT 569
>gi|410920762|ref|XP_003973852.1| PREDICTED: DNA repair and recombination protein RAD54-like
[Takifugu rubripes]
Length = 915
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 145/539 (26%), Positives = 246/539 (45%), Gaps = 76/539 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W+ + G G GCI++ G GKT + +
Sbjct: 321 KVLRPHQREGVKFLWECVTG----------RRIPGSYGCIMADEMGLGKTLQCITLIWTL 370
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P +P ++++P S++ W E +KW L G+ A+ D
Sbjct: 371 LRQSPDFKPEIDKVIVVSPSSLVRNWSNEVQKW-------------LGGRVTPLAI---D 414
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L+ ++ Y ++ + IL +SY F +L + G + GL + DEGH
Sbjct: 415 GGSKDDIDRQLVNFISQYGLRVPSPILIISYETF-RLHAAVLHKGKV----GLVICDEGH 469
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N D ++AL+ + +RR+++SGTP QN+ E SLV +L T +E
Sbjct: 470 RLKNSDNQTYQALNAMAAQRRVLISGTPIQNDLLEY---FSLVHFVNAGILGT----AQE 522
Query: 303 ISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ AN +D +EKL EL + + +L + LP VV
Sbjct: 523 FKKRFELPILKGRDADANEKDRQAGEEKLTELISVVNRCLIRRTSDILSKYLPVKIEQVV 582
Query: 359 ILQPDEFQK----RLCKAVEGVKSFVE--------LNYCVSL--LSVHPSLLPQQFFE-- 402
+ QK R + E + S E L+ SL L HP+L+ + E
Sbjct: 583 CCRLTPLQKELYQRFVRQAEPLDSLEEGGKMNVSTLSSITSLKKLCNHPALIYDKCVEGA 642
Query: 403 -----SFDVDSAKLARLKLDPEAGIKT---RFLLILLELSTNEKVLVFSQYIEPLTLIME 454
+ D+ ++P K ++L + + +T++KV++ S Y + L L +
Sbjct: 643 EGFQGALDLFPPGYCTKAVEPHLSGKMLVLDYILAITKTTTDDKVVLVSNYTQTLDLFEK 702
Query: 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGAS 514
R R + + +DG +KKR + N PS+ I + S+KA G+NL+GA+
Sbjct: 703 LCRSR-----RYQYVRLDGTMSIKKRAKIVERFNSPSNPEFIFMLSSKAGGCGLNLIGAN 757
Query: 515 RVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
R+V+ D WNP + QA++R +R GQ++ ++Y L+ + T+E L+RQA K S+ V
Sbjct: 758 RLVMFDPDWNPANDEQAMARVWRDGQRKTCYIYRLLATGTIEEKILQRQAHKKALSSCV 816
>gi|190348945|gb|EDK41499.2| hypothetical protein PGUG_05597 [Meyerozyma guilliermondii ATCC
6260]
Length = 814
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 148/549 (26%), Positives = 244/549 (44%), Gaps = 97/549 (17%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ G +F+++ +G +D GCI++ G GKT + +
Sbjct: 227 KVLRPHQVAGVKFLYRCTSGLMD----------PRAKGCIMADEMGLGKTLQCIALMWTL 276
Query: 128 MKLHPR-----CRPVIIAPRSMLLTWEEEFKKW---GIDIPFYNLNKPELSGKENNGAVA 179
++ PR + +I+ P S++ W E KW G+ P + GK A
Sbjct: 277 LRQGPRGTKTISKCIIVCPSSLVRNWANEIVKWLGEGVLTPL------AVDGKSTKSA-- 328
Query: 180 LMDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLSYRLFEKLVSGDELSGILLDLP 233
+G L W + +G +L +SY + V D+L+G +
Sbjct: 329 ----------DLG----PALQQWSVASGRNIVRPVLIISYETLRRNV--DKLAGTEV--- 369
Query: 234 GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL-------VR 286
GL + DEGH +N D+ F AL+ ++ RR+ILSGTP QN+ E + L+ R
Sbjct: 370 GLMLADEGHRLKNGDSLTFTALNALRCERRVILSGTPIQNDLSEYFSLLNFSNPGYLGTR 429
Query: 287 QEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVL 346
+F + GR+ I D+KL +L + ++ F+ +L
Sbjct: 430 NDFRKNFENAILRGRDADATDKEKEIG----------DQKLSDLSKLVSKFIIRRTNDIL 479
Query: 347 QESLPGLRHSVVILQPDEFQKRLCKA----------VEGVKSF-VELNYCVSLLSVHPSL 395
+ LP VV ++ QK L K ++G S ++ + L HP L
Sbjct: 480 SKYLPIKYEYVVFVKLSPLQKALYKHFLTSPEVRKLLKGAGSQPLKAIGMLKKLCTHPEL 539
Query: 396 --LPQQFFESFDVDSAKLARLKLDPEAGIKTRF---------LLILLELSTNEKVLVFSQ 444
LP++ S D+ D E I+T + L + T++K+++ S
Sbjct: 540 LRLPEEVSGSEDILPDDYESSGRDKE--IRTWYSGKFAMLERFLHQIRTETDDKIVLISN 597
Query: 445 YIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKAC 504
Y + L LI R++ + +DG ++ KRQ ++ NDP Q I L S+KA
Sbjct: 598 YTQTLDLIERMCRYK-----RYQCCRLDGTMNINKRQKLVDRFNDPEGQEFIFLLSSKAG 652
Query: 505 CEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQA 564
GINL+GA+R++LLD WNP ++QA++R +R GQK+ +Y I++ T+E +RQ+
Sbjct: 653 GCGINLIGANRLILLDPDWNPAADQQALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQS 712
Query: 565 RKVWWSNMV 573
K+ S+ V
Sbjct: 713 MKLSLSSCV 721
>gi|345564001|gb|EGX46983.1| hypothetical protein AOL_s00097g222 [Arthrobotrys oligospora ATCC
24927]
Length = 1390
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 156/550 (28%), Positives = 244/550 (44%), Gaps = 86/550 (15%)
Query: 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLV 122
PR + K + PHQ EG +F+++ G ID +GCI++ G GKT +
Sbjct: 218 PR-LAKVLRPHQIEGVKFLYRATTGLID----------SKAHGCIMADEMGLGKTLQCIT 266
Query: 123 FLQAYMKLHPRC-RP-----VIIAPRSMLLTWEEEFKKW---GIDIPFY---NLNKPELS 170
+ +K P RP VI P S++ W E KW G PF K EL
Sbjct: 267 LMWTLLKQSPEAGRPTIRKCVIACPSSLVRNWANELVKWLGEGTIHPFAVDGKATKEELI 326
Query: 171 GKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILL 230
+ A+A + ++R V + S++ + RL+ K + E+
Sbjct: 327 SQLKQWAIASGNQ---------VVRPVLIVSYE--------TLRLYAKELGSTEI----- 364
Query: 231 DLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF- 289
GL + DEGH +N ++ F AL+ + +RR+ILSGTP QN+ E + L+ ++
Sbjct: 365 ---GLMLCDEGHRLKNGESLTFTALTELNVKRRVILSGTPIQNDLTEYFSLLNFANPDYL 421
Query: 290 GEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQES 349
G +K I + + A+ + DE+LKEL + F+ +L +
Sbjct: 422 GSRADFRKKYEMPILRGRDANSDEK----TREKGDERLKELFGLVNKFIIRRTNDILSKY 477
Query: 350 LPGLRHSVVILQPDEFQK-------------RLCKAVEGVKSFVELNYCVSLLSVHPSLL 396
LP VV FQ+ +L + V G K +N L + HP LL
Sbjct: 478 LPVKYEHVVFCGLAPFQRDLYNHFVTSSEVRKLLRGV-GCKPLKAINVLKKLCN-HPDLL 535
Query: 397 --------PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS-----TNEKVLVFS 443
+QFF S V A R + L++ L+ TN+K+++ S
Sbjct: 536 ELPDDLHGSEQFFPSDFVPKAARGRDGRYVNVCYSGKMLVLDRMLARIRQDTNDKIVLIS 595
Query: 444 QYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKA 503
Y + L + + R + G L +DG +V KRQ ++ N+P I L S+KA
Sbjct: 596 NYTQTLDVFEKLARSK-----GYGFLRLDGTMNVNKRQKLVDKFNNPDGDEFIFLLSSKA 650
Query: 504 CCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQ 563
G+NL+GA+R+VL D WNP ++QA++R +R GQK+ VY I + T+E +RQ
Sbjct: 651 GGCGLNLIGANRLVLFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQ 710
Query: 564 ARKVWWSNMV 573
+ K S+ V
Sbjct: 711 SHKQSLSSCV 720
>gi|146413212|ref|XP_001482577.1| hypothetical protein PGUG_05597 [Meyerozyma guilliermondii ATCC
6260]
Length = 814
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 148/549 (26%), Positives = 243/549 (44%), Gaps = 97/549 (17%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ G +F+++ +G +D GCI++ G GKT + +
Sbjct: 227 KVLRPHQVAGVKFLYRCTSGLMD----------PRAKGCIMADEMGLGKTLQCIALMWTL 276
Query: 128 MKLHPR-----CRPVIIAPRSMLLTWEEEFKKW---GIDIPFYNLNKPELSGKENNGAVA 179
++ PR + +I+ P S++ W E KW G+ P + GK A
Sbjct: 277 LRQGPRGTKTISKCIIVCPSSLVRNWANEIVKWLGEGVLTPL------AVDGKSTKSA-- 328
Query: 180 LMDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLSYRLFEKLVSGDELSGILLDLP 233
+G L W + +G +L +SY + V D+L+G +
Sbjct: 329 ----------DLG----PALQQWSVASGRNIVRPVLIISYETLRRNV--DKLAGTEV--- 369
Query: 234 GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL-------VR 286
GL + DEGH +N D+ F AL+ ++ RR+ILSGTP QN+ E + L+ R
Sbjct: 370 GLMLADEGHRLKNGDSLTFTALNALRCERRVILSGTPIQNDLSEYFSLLNFSNPGYLGTR 429
Query: 287 QEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVL 346
+F + GR+ I D+KL +L + ++ F+ +L
Sbjct: 430 NDFRKNFENAILRGRDADATDKEKEIG----------DQKLSDLSKLVSKFIIRRTNDIL 479
Query: 347 QESLPGLRHSVVILQPDEFQKRLCKA----------VEGVKSF-VELNYCVSLLSVHPSL 395
+ LP VV ++ QK L K ++G S ++ + L HP L
Sbjct: 480 SKYLPIKYEYVVFVKLSPLQKALYKHFLTSPEVRKLLKGAGSQPLKAIGMLKKLCTHPEL 539
Query: 396 --LPQQFFESFDVDSAKLARLKLDPEAGIKTRF---------LLILLELSTNEKVLVFSQ 444
LP++ S D+ D E I+T + L + T++K+++ S
Sbjct: 540 LRLPEEVLGSEDILPDDYESSGRDKE--IRTWYSGKFAMLERFLHQIRTETDDKIVLISN 597
Query: 445 YIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKAC 504
Y + L LI R++ + +DG ++ KRQ ++ NDP Q I L S+KA
Sbjct: 598 YTQTLDLIERMCRYK-----RYQCCRLDGTMNINKRQKLVDRFNDPEGQEFIFLLSSKAG 652
Query: 505 CEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQA 564
GINL+GA+R++LLD WNP ++QA++R +R GQK+ +Y I + T+E +RQ+
Sbjct: 653 GCGINLIGANRLILLDPDWNPAADQQALARVWRDGQKKDCFIYRFILTGTIEEKIFQRQS 712
Query: 565 RKVWWSNMV 573
K+ S+ V
Sbjct: 713 MKLSLSSCV 721
>gi|328872521|gb|EGG20888.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
Length = 2077
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 147/558 (26%), Positives = 244/558 (43%), Gaps = 94/558 (16%)
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
L+ R + + PHQ G F+W+NI GCI++H+ G GKT
Sbjct: 1415 LIHRQLSTLLKPHQILGVRFMWENI--------------IAKEKGCILAHSMGLGKTLQV 1460
Query: 121 LVFLQAYMKL-HPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVA 179
+ + +++ + + ++I P + L W+ EF KW L N+ V
Sbjct: 1461 ITLIHTHVQYAKTKAKYLLIVPANTLYNWKNEFSKW-------------LPQDANDVKVT 1507
Query: 180 LMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE-LSGILLDLPGL--- 235
+ R K + + + +W G++ L+Y F S E D L
Sbjct: 1508 IYMPRSTESKKREVTKDIN--NWHSNGGVMLLTYEYFMYFYSDQESQKSTTSDFQKLIHC 1565
Query: 236 -FVF-DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVL 293
VF DEGH ++ T + ++S+IKT +R+IL+G P QNN +E ++ +R+ + +
Sbjct: 1566 DMVFIDEGHKIKSQSTKSYISISKIKTDKRVILTGYPLQNNLKEYYTMINFIRENY--LG 1623
Query: 294 RTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGL 353
TV R I ++ S ++ + +L L F+ VL++ LP
Sbjct: 1624 STVEFRDRFIKPVENGSKENAT-KFEYDEMRRRLSALSSLTKDFIFRLGPQVLEKELPKK 1682
Query: 354 RHSVVILQPDEFQKRLCKAVEGV-KSFVELNYCVSLLSVHP-SLLPQQFFESFDVDSAKL 411
+++ ++ E Q +L + + K +E SL+ HP +LL ++ D++ +
Sbjct: 1683 IETIISVKGTEIQYKLLDILTKLGKRIIESQELGSLICNHPDTLLERKPLSVKDINKKSV 1742
Query: 412 ARLK-----------------------------------------LDP--------EAGI 422
L+ LD E
Sbjct: 1743 RELRDLLRNHHLPSHDCTEKDELVKRVLYVNECRFLAVDSPFIGELDSTVYRKGVIEHST 1802
Query: 423 KTRFLLILLE--LSTNEKVLVFSQYIEPLTLI--MEQLRHRFNWREGQEVLYMDGKQDVK 478
K L LLE ++ NE+V++F+ I L L+ QLR F WR+G + +DG +
Sbjct: 1803 KMVILFKLLEQCVALNERVVLFTSSIATLNLLEYFLQLREGFKWRQGVDYFRLDGTTRPQ 1862
Query: 479 KRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRL 538
RQ I+ ND ++ ++ L STKA G NL G +RV+L D++WNP ERQA+ R +R+
Sbjct: 1863 DRQIMIHKYNDLTNSIKLFLISTKAGSLGTNLTGGTRVILFDLMWNPVHERQAVFRCFRI 1922
Query: 539 GQKRVVHVYHLITSETLE 556
GQ + V+VY +IT+ TLE
Sbjct: 1923 GQTKPVYVYTIITAATLE 1940
>gi|392595792|gb|EIW85115.1| DNA repair protein, SNF2 family [Coniophora puteana RWD-64-598 SS2]
Length = 811
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 152/546 (27%), Positives = 243/546 (44%), Gaps = 86/546 (15%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ EG +F++K G + ++ GCI++ G GKT + L
Sbjct: 219 KVLRPHQVEGVKFLYKCTTGMVVENQY----------GCIMADEMGLGKTLQCIALLWTL 268
Query: 128 MKLHPRC------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
+K PR + +I P S++ W E KW GK+ A+A+
Sbjct: 269 VKQSPRPGKPTIEKCIIACPSSLVKNWANELSKW--------------LGKDTISALAV- 313
Query: 182 DNRKRGRGKV--GLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFD 239
+ K G+G++ + R+V + ++ +SY L + I GL + D
Sbjct: 314 -DGKGGKGELLEKVARWVAASGRNVTQPVMIVSYETLRTLTAHLASCSI-----GLLLCD 367
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS 299
EGH +N ++ F+AL+ + RRR+IL+GTP QN+ E + L+ F
Sbjct: 368 EGHRLKNSESLTFQALNSLDVRRRVILTGTPIQNDLSEYFSLLNFANPNF---------L 418
Query: 300 GREISKAKHASLISSIGRCANHRD------DEKLKELKEKIAPFVNVHKGTVLQESLPGL 353
G ++ K+ GR AN D ++KLKEL + F+ +L + LP
Sbjct: 419 GSKVDFRKNFENAIIRGRDANASDAFQAECEKKLKELGNLVTKFIIRRTNDLLSKYLPVK 478
Query: 354 RHSVVILQPDEFQ---KRLCKAVEGVKSFVELNYCVSLLSV--------HPSLL------ 396
VV EFQ RL + +K+ + L ++ HP LL
Sbjct: 479 YEHVVFCGLSEFQLSLYRLFISSPEIKALLRGTESQPLKAINMLKKLCNHPQLLNLPDDL 538
Query: 397 -------PQQFFESFDVDSAKLARLKLD--PEAGIKTRFLLILLELSTNEKVLVFSQYIE 447
P F S K L+ D + + RFL + +TN+K+++ S Y +
Sbjct: 539 RGSDHLIPDDFSGSNSSGRGKTQNLRCDWGGKFIVLERFLH-QMRTTTNDKIVLISNYTQ 597
Query: 448 PLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEG 507
L L + R + + G +DG + KRQ ++ N+P + I L S+KA G
Sbjct: 598 TLDLFEKLCRSK---KYG--YFRLDGTMSITKRQKLVDQFNNPEGKEFIFLLSSKAGGCG 652
Query: 508 INLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567
INL+GA+R++L D WNP ++QA++R +R GQK+ VY I++ T+E +RQA K
Sbjct: 653 INLIGANRLILFDPDWNPAADQQALARVWRDGQKKECFVYRFISTGTIEEKIFQRQASKQ 712
Query: 568 WWSNMV 573
S+ V
Sbjct: 713 ALSSAV 718
>gi|432853422|ref|XP_004067699.1| PREDICTED: DNA repair and recombination protein RAD54-like [Oryzias
latipes]
Length = 733
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 147/537 (27%), Positives = 245/537 (45%), Gaps = 73/537 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG F+W+ + G G +GCI++ G GKT + +
Sbjct: 140 KVLRPHQREGVRFLWECVTG----------RRIPGSHGCIMADEMGLGKTLQCIALVWTL 189
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P +P ++++P S++ W E KW L G+ + A+ D
Sbjct: 190 LRQSPDGKPEIDKAIVVSPSSLVRNWYNEVGKW-------------LGGRVSPVAI---D 233
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L+ +V ++ T IL +SY F +L + G + GL + DEGH
Sbjct: 234 GGSKEEIDRQLVNFVSQNGLRVPTPILIISYETF-RLHAAVLHRGRV----GLVICDEGH 288
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGEVLRTVRKSGR 301
+N D ++AL+ +K +RR+++SGTP QN+ E + + V G ++
Sbjct: 289 RLKNADNQTYQALNAMKAQRRVLISGTPIQNDLLEYFSLVHFVNAGILGSAQDFKKRFEL 348
Query: 302 EISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQ 361
I K + A + R +EKLKEL + + +L + LP VV +
Sbjct: 349 PILKGRDADASDADRRAG----EEKLKELIGIVNRCLIRRTSDILSKYLPVKVEQVVCCR 404
Query: 362 PDEFQKRLCKAV-----------EGVKSFVELNYCVSL--LSVHPSLLPQQ-------FF 401
Q L + +G + L+ SL L HP+L+ + F
Sbjct: 405 LTPLQAELYRLFLRQAKPLQTLQQGSMNVSSLSSITSLKKLCNHPTLIHDKCVSGEEGFD 464
Query: 402 ESFDVDSAKLARLKLDPEAGIKT---RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRH 458
+ D+ + +++P+ K ++L + +T++KV++ S Y + L L + R
Sbjct: 465 GALDLFPPGYSSKEVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRS 524
Query: 459 RFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
R LY +DG +KKR + N PSS I + S+KA G+NL+GA+R+
Sbjct: 525 R-------RYLYVRLDGSMSIKKRAKMVERFNSPSSPDFIFMLSSKAGGCGLNLIGANRL 577
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
V+ D WNP + QA++R +R GQK+ +VY L+T+ T+E L+RQA K S+ V
Sbjct: 578 VMFDPDWNPANDEQAMARVWRDGQKKTCYVYRLLTTGTIEEKILQRQAHKKALSSCV 634
>gi|440638315|gb|ELR08234.1| DNA repair and recombination protein RAD54 and RAD54-like protein
[Geomyces destructans 20631-21]
Length = 810
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 165/552 (29%), Positives = 246/552 (44%), Gaps = 81/552 (14%)
Query: 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLV 122
PR + K + PHQ EG +F++K + G ID NGCI++ G GKT +
Sbjct: 215 PR-LAKVLRPHQIEGVKFMYKCVTGMID----------DRANGCIMADEMGLGKTLQCIT 263
Query: 123 FLQAYMKL-----HPRCRPVIIA-PRSMLLTWEEEFKKW---GIDIPFY---NLNKPELS 170
+ +K P + VIIA P S++ W E KW G +PF +K EL+
Sbjct: 264 LMWTLLKQSTDAGKPTIQKVIIACPSSLVQNWANELVKWLGKGAIVPFAIDGKASKEELT 323
Query: 171 GKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILL 230
+ A+A GR + R V + S++ + RL + DEL +
Sbjct: 324 QQLRQWAIA------SGRA---VTRPVIIVSYE--------TLRL-----NVDELKNTQI 361
Query: 231 DLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF- 289
GL + DEGH +N D+ F AL+ + RR+ILSGTP QN+ E + +S +
Sbjct: 362 ---GLMLCDEGHRLKNGDSQTFTALNNLNVSRRVILSGTPIQNDLSEYFSLVSFANPDLL 418
Query: 290 GEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQES 349
G L +K I K + A+ R D+ L+EL + F+ +L +
Sbjct: 419 GTRLEFRKKYELPILKGRDAAGTDK----DRERGDDCLRELLGVVNKFIIRRTNDILSKY 474
Query: 350 LPGLRHSVVILQPDEFQKRL---------CKAVEGVKSFVELNYCVSL--LSVHPSLL-- 396
LP VV FQ L KA+ K L L L HP LL
Sbjct: 475 LPVKYEHVVFCGLAPFQLDLYNYFITSPEIKALLRGKGSQPLKAIGMLKKLCNHPDLLNL 534
Query: 397 -------PQQFFESFDVDSAKLARLKLDPEAGIKTRFL---LILLELSTNEKVLVFSQYI 446
Q F E + A+ + P K + L L + TN+K+++ S Y
Sbjct: 535 SDDLPGCEQYFPEDYVPKDARGRDRDVKPWYSGKMQVLDRMLARIRQDTNDKIVLISNYT 594
Query: 447 EPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCE 506
+ L + + R R G L +DG +V KRQ ++ NDP + L S+KA
Sbjct: 595 QTLDIFDKLCRSR-----GYGSLRLDGTMNVSKRQKLVDKFNDPDGPEFVFLLSSKAGGC 649
Query: 507 GINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
G+NL+GA+R+VL D WNP ++QA++R +R GQK+ VY I + T+E +RQ+ K
Sbjct: 650 GLNLIGANRLVLFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQSHK 709
Query: 567 VWWSNMVFPSSD 578
S+ V S++
Sbjct: 710 QSLSSCVVDSAE 721
>gi|238878261|gb|EEQ41899.1| DNA repair and recombination protein RAD54 [Candida albicans WO-1]
Length = 848
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 151/558 (27%), Positives = 250/558 (44%), Gaps = 109/558 (19%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ G +F+++ AG ID GCI++ G GKT L +
Sbjct: 254 KILRPHQIAGVKFLYRCTAGLID----------ARAKGCIMADEMGLGKTLQCLTLMWTL 303
Query: 128 MKLHPRCR-----PVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVA--L 180
++ PR + +I+ P S++ W E KW GA+
Sbjct: 304 LRQSPRGKRTIEKCIIVCPSSLVRNWANEIVKW-----------------LGEGALTPLA 346
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLSYRLFEKLVSGDELSGILLDLPG 234
+D + ++G L W G +L +SY + V D+L+G + G
Sbjct: 347 VDGKSTKNSELG----TALQQWSTAQGRNIVRPVLIISYETLRRNV--DKLAGTEV---G 397
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-------RQ 287
L + DEGH +N D+ F AL+ ++ RR+ILSGTP QN+ E + L+ R
Sbjct: 398 LMLADEGHRLKNGDSLTFTALNSLRCERRVILSGTPIQNDLSEYFSLLNFANPGYLGTRI 457
Query: 288 EFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQ 347
EF + GR+ S+ + D+KL EL + ++ F+ +L
Sbjct: 458 EFKKNYENAILKGRD----------STASDEEREKGDKKLNELSQMVSKFIIRRTNDILS 507
Query: 348 ESLPGLRHSVVI------LQPDEFQ--------KRLCKAVEGVKSFVELNYCVSLLSVHP 393
+ LP +++ V+ +Q D + K+L K G + + L + HP
Sbjct: 508 KYLP-IKYEYVLFTGLSPMQKDIYNHFITSPEIKKLMKGT-GSQPLKAIGMLKKLCN-HP 564
Query: 394 SLL-------------PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLI-----LLELST 435
LL P + S SA R + + +FL++ + T
Sbjct: 565 DLLDLPEDVEGSEEFIPDDYQSSIAGGSASRNR---EIQTWFSGKFLILERFLQKINKET 621
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
++K+++ S Y + L LI + R++ + G VL +DG ++ KRQ ++ NDP+
Sbjct: 622 DDKIVLISNYTQTLDLIEKMCRYK---KYG--VLRLDGTMNINKRQKLVDKFNDPNGPEF 676
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
I L S+KA GINL+GA+R+VL+D WNP ++QA++R +R GQK+ +Y I++ T+
Sbjct: 677 IFLLSSKAGGCGINLIGANRLVLMDPDWNPASDQQALARVWRDGQKKDCFIYRFISTGTI 736
Query: 556 EWDKLRRQARKVWWSNMV 573
E +RQ+ K+ S+ V
Sbjct: 737 EEKIFQRQSMKMSLSSCV 754
>gi|41055574|ref|NP_957438.1| DNA repair and recombination protein RAD54-like [Danio rerio]
gi|28277973|gb|AAH46050.1| RAD54-like (S. cerevisiae) [Danio rerio]
Length = 738
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 148/544 (27%), Positives = 248/544 (45%), Gaps = 87/544 (15%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W + G ++NS GCI++ G GKT + +
Sbjct: 145 KVLRPHQREGVKFLWDCVTG----RRIENSY------GCIMADEMGLGKTLQCITLIWTL 194
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
+K P C+P ++++P S++ W E KW L G+ A+ D
Sbjct: 195 LKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKW-------------LGGRVQPVAI---D 238
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLF----EKLVSGDELSGILLDLPGLFVF 238
+ L+ ++ ++ T IL +SY F E L G GL +
Sbjct: 239 GGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKV---------GLVIC 289
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK 298
DEGH +N D + AL+ + +RR+++SGTP QN+ E SLV +L T
Sbjct: 290 DEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEY---FSLVHFVNSGILGT--- 343
Query: 299 SGREISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLR 354
+E K ++ A+ +D ++KL+EL + + +L + LP
Sbjct: 344 -AQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKI 402
Query: 355 HSVVILQPDEFQKRL-------CKAVEGVKS------FVELNYCVSLLSVHPSLLPQQ-- 399
VV QK L K VE +++ + + L HP+L+ ++
Sbjct: 403 EQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCL 462
Query: 400 -----FFESFDVDSAKLARLKLDPEAGIKT---RFLLILLELSTNEKVLVFSQYIEPLTL 451
F + D+ + ++P+ K ++L + +T++KV++ S Y + L L
Sbjct: 463 TGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDL 522
Query: 452 IMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509
+ R+R LY +DG +KKR + N+PSS I + S+KA G+N
Sbjct: 523 FEKLCRNR-------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLN 575
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
L+GA+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E L+RQA K
Sbjct: 576 LIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKAL 635
Query: 570 SNMV 573
S+ V
Sbjct: 636 SSCV 639
>gi|62738897|pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF
EUKARYOTIC Rad54
Length = 644
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 150/546 (27%), Positives = 249/546 (45%), Gaps = 91/546 (16%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W + G ++NS GCI++ G GKT + +
Sbjct: 54 KVLRPHQREGVKFLWDCVTG----RRIENSY------GCIMADEMGLGKTLQCITLIWTL 103
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
+K P C+P ++++P S++ W E KW L G+ A+ D
Sbjct: 104 LKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKW-------------LGGRVQPVAI---D 147
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLF----EKLVSGDELSGILLDLPGLFVF 238
+ L+ ++ ++ T IL +SY F E L G GL +
Sbjct: 148 GGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGK---------VGLVIC 198
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK 298
DEGH +N D + AL+ + +RR+++SGTP QN+ E SLV +L T
Sbjct: 199 DEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEY---FSLVHFVNSGILGT--- 252
Query: 299 SGREISKAKHASLISSIGRCANHRD------DEKLKELKEKIAPFVNVHKGTVLQESLPG 352
+E K ++ GR A+ D ++KL+EL + + +L + LP
Sbjct: 253 -AQEFKKRFEIPILK--GRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPV 309
Query: 353 LRHSVVILQPDEFQKRL-------CKAVEGVKS------FVELNYCVSLLSVHPSLLPQQ 399
VV QK L K VE +++ + + L HP+L+ ++
Sbjct: 310 KIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEK 369
Query: 400 -------FFESFDVDSAKLARLKLDPEAGIKT---RFLLILLELSTNEKVLVFSQYIEPL 449
F + D+ + ++P+ K ++L + +T++KV++ S Y + L
Sbjct: 370 CLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTL 429
Query: 450 TLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEG 507
L + R+R LY +DG +KKR + N+PSS I + S+KA G
Sbjct: 430 DLFEKLCRNR-------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCG 482
Query: 508 INLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567
+NL+GA+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E L+RQA K
Sbjct: 483 LNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKK 542
Query: 568 WWSNMV 573
S+ V
Sbjct: 543 ALSSCV 548
>gi|68467321|ref|XP_722322.1| hypothetical protein CaO19.12471 [Candida albicans SC5314]
gi|68467550|ref|XP_722208.1| hypothetical protein CaO19.5004 [Candida albicans SC5314]
gi|46444164|gb|EAL03441.1| hypothetical protein CaO19.5004 [Candida albicans SC5314]
gi|46444289|gb|EAL03565.1| hypothetical protein CaO19.12471 [Candida albicans SC5314]
Length = 848
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 151/558 (27%), Positives = 250/558 (44%), Gaps = 109/558 (19%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ G +F+++ AG ID GCI++ G GKT L +
Sbjct: 254 KILRPHQIAGVKFLYRCTAGLID----------ARAKGCIMADEMGLGKTLQCLTLMWTL 303
Query: 128 MKLHPRCR-----PVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVA--L 180
++ PR + +I+ P S++ W E KW GA+
Sbjct: 304 LRQSPRGKRTIEKCIIVCPSSLVRNWANEIVKW-----------------LGEGALTPLA 346
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLSYRLFEKLVSGDELSGILLDLPG 234
+D + ++G L W G +L +SY + V D+L+G + G
Sbjct: 347 VDGKSTKNSELG----TALQQWSTAQGRNIVRPVLIISYETLRRNV--DKLAGTEV---G 397
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-------RQ 287
L + DEGH +N D+ F AL+ ++ RR+ILSGTP QN+ E + L+ R
Sbjct: 398 LMLADEGHRLKNGDSLTFTALNSLRCERRVILSGTPIQNDLSEYFSLLNFANPGYLGTRI 457
Query: 288 EFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQ 347
EF + GR+ S+ + D+KL EL + ++ F+ +L
Sbjct: 458 EFKKNYENAILKGRD----------STASDEEREKGDKKLNELSQMVSKFIIRRTNDILS 507
Query: 348 ESLPGLRHSVVI------LQPDEFQ--------KRLCKAVEGVKSFVELNYCVSLLSVHP 393
+ LP +++ V+ +Q D + K+L K G + + L + HP
Sbjct: 508 KYLP-IKYEYVLFTGLSPMQKDIYNHFITSPEIKKLMKGT-GSQPLKAIGMLKKLCN-HP 564
Query: 394 SLL-------------PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLI-----LLELST 435
LL P + S SA R + + +FL++ + T
Sbjct: 565 DLLDLPEDVEGSEEFIPDDYQSSIAGGSASRNR---EIQTWFSGKFLILERFLQKINKET 621
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
++K+++ S Y + L LI + R++ + G VL +DG ++ KRQ ++ NDP+
Sbjct: 622 DDKIVLISNYTQTLDLIEKMCRYK---KYG--VLRLDGTMNINKRQKLVDKFNDPNGPEF 676
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
I L S+KA GINL+GA+R+VL+D WNP ++QA++R +R GQK+ +Y I++ T+
Sbjct: 677 IFLLSSKAGGCGINLIGANRLVLMDPDWNPASDQQALARVWRDGQKKDCFIYRFISTGTI 736
Query: 556 EWDKLRRQARKVWWSNMV 573
E +RQ+ K+ S+ V
Sbjct: 737 EEKIFQRQSMKMSLSSCV 754
>gi|7384851|dbj|BAA93079.1| Rad54 homolog [Neurospora crassa]
Length = 834
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 154/551 (27%), Positives = 237/551 (43%), Gaps = 88/551 (15%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ EG F+++ + G ID NGCI++ G GKT + L
Sbjct: 223 KVLRPHQIEGVRFMYRCVTGMID----------EKANGCIMADEMGLGKTLQCITLLWTL 272
Query: 128 MKLHPRC------RPVIIAPRSMLLTWEEEFKKW-GID--IPFYNLNKPELSGKENNGAV 178
+K P + ++ P S++ W E KW G D PF + GK +
Sbjct: 273 LKQSPDAGKSTIQKAIVACPSSLVRNWANELVKWLGADAITPF------AIDGKAS---- 322
Query: 179 ALMDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLSYRLFEKLVSGDELSGILLDL 232
K L R +L W + +G ++ +SY ++ DEL G +
Sbjct: 323 -----------KEELTR--QLRQWAIASGRSVTRPVIIVSYETLR--LNVDELKGTPI-- 365
Query: 233 PGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGE 291
GL + DEGH +N D+ F AL+ + RR+ILSGTP QN+ E +++ + G
Sbjct: 366 -GLMLCDEGHRLKNGDSQTFSALNSLNVSRRVILSGTPIQNDLSEYFALITVANPDLLGT 424
Query: 292 VLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLP 351
L ++ I + +HA R DE L EL + F+ +L + LP
Sbjct: 425 RLEFRKRFEIPILRGRHA----DASEAERKRGDECLVELLAIVNKFIIRRTNDILSKYLP 480
Query: 352 GLRHSVVILQPDEFQKRLCKAV------------EGVKSFVELNYCVSLLSVHPSLLP-- 397
VV FQ L +G + +N L + HP LL
Sbjct: 481 VKYEHVVFCNLAPFQLDLYNYFVASPDIQALLRGKGSQPLKAINILKKLCN-HPDLLDLS 539
Query: 398 -------QQFFESFDVDSAKLARLKLDPEAGIKTRFL---LILLELSTNEKVLVFSQYIE 447
Q + E + A+ + P K + L L + TN+K+++ S Y +
Sbjct: 540 ADLPGCEQYWPEDYVPKEARGRDRDVKPWYSGKMQVLDRMLARIRADTNDKIVLISNYTQ 599
Query: 448 PLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEG 507
L L R+R L +DG +V KRQ ++ NDP + L S+KA G
Sbjct: 600 TLDLFERLCRNR-----QYGCLRLDGTMNVNKRQKLVDKFNDPEGDEFVFLLSSKAGGCG 654
Query: 508 INLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567
+NL+GA+R+VL D WNP ++QA++R +R GQK+ VY I + T+E +RQ+ K
Sbjct: 655 LNLIGANRLVLFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQSHKQ 714
Query: 568 WWSNMVFPSSD 578
S+ V S++
Sbjct: 715 SLSSCVVDSAE 725
>gi|260943410|ref|XP_002616003.1| hypothetical protein CLUG_03244 [Clavispora lusitaniae ATCC 42720]
gi|238849652|gb|EEQ39116.1| hypothetical protein CLUG_03244 [Clavispora lusitaniae ATCC 42720]
Length = 879
Score = 169 bits (427), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 149/543 (27%), Positives = 237/543 (43%), Gaps = 93/543 (17%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ G F+++ +G +D GCI++ G GKT L + ++
Sbjct: 295 PHQVAGVRFLYRCTSGLVD----------ARAKGCIMADEMGLGKTLQCLALMWTLLRQG 344
Query: 132 PRCR-----PVIIAPRSMLLTWEEEFKKW---GIDIPFYNLNKPELSGKENNGAVALMDN 183
P R +I+ P S++ W E KW G P + GK A
Sbjct: 345 PSGRRTIDKCIIVCPSSLVRNWANEMDKWLGPGALTPL------AVDGKSTKSA------ 392
Query: 184 RKRGRGKVGLIRYVKLYSWKMGTG------ILGLSYRLFEKLVSGDELSGILLDLPGLFV 237
+G L W +G +L +SY + + D+L+G + GL +
Sbjct: 393 ------DLGQA----LQQWCTASGRNIVRPVLIISYETLRR--NADKLAGTEV---GLML 437
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DEGH +N D+ F AL+ ++ RR+ILSGTP QN+ E + L+ + R
Sbjct: 438 ADEGHRLKNGDSLTFTALNSLRCERRVILSGTPIQNDLSEYFSLLTFANPGYLGTRNEFR 497
Query: 298 KSGREISKAKHASLISSIGRCANHRDDE------KLKELKEKIAPFVNVHKGTVLQESLP 351
++ + + I GR A+ DDE KL EL + ++ F+ +L + LP
Sbjct: 498 RN--------YENTILR-GRDADATDDEVKKGEQKLAELSQAVSKFIIRRTNDILSKYLP 548
Query: 352 GLRHSVVILQPDEFQKRL------------------CKAVEGVKSFVELNYCVSL---LS 390
VV + FQ+ L KA++ +K +SL +
Sbjct: 549 VKYEYVVFVGLSPFQRALYEHFISSDDSSKLIASQPLKAIDMLKKLCTHPDLLSLPDDIQ 608
Query: 391 VHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLT 450
L+P + S + + + I RFL + TN+K++V S Y L
Sbjct: 609 GSRKLIPDDYQSSEAGGRGREIQTWFSAKFSILERFLH-QIRTQTNDKIVVISNYTRTLD 667
Query: 451 LIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINL 510
LI + R++ R G L +DG + KRQ ++ NDP I L S+KA GINL
Sbjct: 668 LIEKMCRYK---RYGS--LRLDGTMTINKRQKIVDRFNDPEGNEFIFLLSSKAGGCGINL 722
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS 570
+GA+R+VL+D WNP ++QA++R +R GQK+ +Y + + T+E +RQ+ K+ S
Sbjct: 723 IGANRLVLMDPDWNPAADQQALARVWRDGQKKDCFIYRFMCTGTIEEKIFQRQSMKLSLS 782
Query: 571 NMV 573
+ V
Sbjct: 783 SCV 785
>gi|393232942|gb|EJD40518.1| SNF2 family domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 821
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 157/554 (28%), Positives = 239/554 (43%), Gaps = 104/554 (18%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ EG +F++K +G + ++ GCI++ A G GKT + L +K
Sbjct: 225 PHQVEGVKFLYKCTSGMMVENQY----------GCIMADAMGLGKTLQCITLLWTLLKQS 274
Query: 132 PRC------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRK 185
P + +I P S++ W EF KW G V +
Sbjct: 275 PHAGKPTIEKCIIACPSSLVKNWANEFTKW-----------------LGEGTVPCLAVDG 317
Query: 186 RGRGKVGLIRYVKLYSWKMGTG------ILGLSYRLFEKLVSGDELSGILLDLPGLFVFD 239
+G K LI V+ W +G ++ +SY L G L+ + GL + D
Sbjct: 318 KGT-KADLIANVQ--RWVAASGRNVTLPVMIVSYETLRSL--GAWLANATI---GLLLCD 369
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS 299
EGH +N D+ FKAL+ + +RR+ILSGTP QN+ E + L+ +F S
Sbjct: 370 EGHRLKNSDSLTFKALNSLNVKRRVILSGTPIQNDLSEYFSLLNFANPDF-------LGS 422
Query: 300 GREISKAKHASLISSIGRCANHRDDEK------LKELKEKIAPFVNVHKGTVLQESLPGL 353
+ K ++I GR A+ D EK LKEL ++ F+ +L + LP
Sbjct: 423 KADFKKNFENAIIR--GRDADATDGEKEKSEAKLKELGALVSRFIIRRANDLLSKYLPVK 480
Query: 354 RHSVVILQPDEFQ-------------KRLCKAVEGVKSFVELNYCVSLLSVHPSLL--PQ 398
VV QP FQ K+L + V G + +N L + HP LL P+
Sbjct: 481 YEQVVFCQPSPFQVALYKLFISSPEIKKLLRGV-GSQPLKAINILKKLCN-HPELLDLPK 538
Query: 399 QFFESFDV-------------------DSAKLARLKLDPEAGIKTRFLLILLELSTNEKV 439
S ++ + R + + RFL + TN+K+
Sbjct: 539 DLHGSDELIPEGFVGAGGDAGGFGGGRRERRELRCDWGGKFAVLERFLH-RIRTETNDKI 597
Query: 440 LVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
++ S Y + L L R + G +DG V KRQ ++ N+P + I L
Sbjct: 598 VLISNYTQTLELFERLCRDK-----GYGFFRLDGSMSVIKRQKLVDQFNNPEGKEFIFLL 652
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
S+KA GINL+GA+R++L D WNP ++QA++R +R GQ + VY I+S T+E
Sbjct: 653 SSKAGGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQTKECFVYRFISSGTIEEKI 712
Query: 560 LRRQARKVWWSNMV 573
+RQA K S+ V
Sbjct: 713 FQRQASKQALSSCV 726
>gi|449508575|ref|XP_002191829.2| PREDICTED: DNA repair and recombination protein RAD54-like
[Taeniopygia guttata]
Length = 745
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 139/532 (26%), Positives = 239/532 (44%), Gaps = 71/532 (13%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F+W + S G +GCI++ G GKT + + ++
Sbjct: 156 PHQREGVKFLWDCV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQS 205
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P V+++P S++ W E +KW L G+ A+ +
Sbjct: 206 PDCKPEIEKAVVVSPSSLVRNWYNEVEKW-------------LGGRIQPLAIDGGSKEEI 252
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRN 246
R VG ++ + ++ + IL +SY F + + GL + DEGH +N
Sbjct: 253 DRKLVG---FMSQHGVRVPSPILIISYETFRLHAEVLQKGSV-----GLVICDEGHRLKN 304
Query: 247 DDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKA 306
+ ++AL+ + T RR+++SGTP QN+ E SLV +L T ++ R
Sbjct: 305 SENQTYQALNSLNTPRRVLISGTPIQNDLLEY---FSLVHFVNSGILGTAQEFKRHFEMP 361
Query: 307 KHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQ 366
+ H+ +E+LKEL + + +L + LP VV + Q
Sbjct: 362 ILKGRDADASEAERHKGEERLKELISIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQ 421
Query: 367 KRL-------CKAVEGVKS------FVELNYCVSLLSVHPSLL-------PQQFFESFDV 406
L K VE +K + + L HP+L+ + F + +
Sbjct: 422 TELYKNFLKQAKPVEELKEGKISVSSLSSITSLKKLCNHPALIYDKCVEEEEGFMGALGL 481
Query: 407 DSAKLARLKLDPEAGIKT---RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWR 463
+ + ++P+ K ++L + + ++N+KV++ S Y + L L + R R
Sbjct: 482 FPSGYSTKSVEPQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFEKLCRSR---- 537
Query: 464 EGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDV 521
LY +DG +KKR + N PSS I + S+KA G+NL+GA+R+V+ D
Sbjct: 538 ---RYLYVRLDGTMSIKKRAKIVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDP 594
Query: 522 VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
WNP + QA++R +R GQK++ ++Y L+++ T+E +RQ K S+ V
Sbjct: 595 DWNPANDEQAMARVWRDGQKKMCYIYRLLSTGTIEEKIFQRQTHKKALSSCV 646
>gi|365991713|ref|XP_003672685.1| hypothetical protein NDAI_0K02510 [Naumovozyma dairenensis CBS 421]
gi|343771461|emb|CCD27442.1| hypothetical protein NDAI_0K02510 [Naumovozyma dairenensis CBS 421]
Length = 872
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 153/557 (27%), Positives = 258/557 (46%), Gaps = 87/557 (15%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNST-STG---------GGNGCIISHAPGTGKT 117
K + PHQ EG +F+++ + G + D L T +TG G GCI++ G GKT
Sbjct: 258 KILRPHQVEGVKFLYRCVTGLVMKDFLDAETVNTGIVAPQQNNRGAYGCIMADEMGLGKT 317
Query: 118 GLTLVFLQAYMKLHPRCR-----PVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGK 172
+ + ++ P+ + +I+ P S++ W E KW + L+ + GK
Sbjct: 318 LQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNWANELIKW---LGPNTLSPLAIDGK 374
Query: 173 ENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLSYRLFEKLVSGDELS 226
+++ A G + +K SW G +L +SY + V D+L
Sbjct: 375 KSSLA----------SGSTTVAEAIK--SWGQAKGRNIVKPVLIISYETLRRNV--DQLQ 420
Query: 227 GILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR 286
+ GL + DEGH +N D+ F AL I RR+ILSGTP QN+ E +L+
Sbjct: 421 NCDV---GLMLADEGHRLKNADSLTFTALDSINCPRRVILSGTPIQNDLSEY---FALLN 474
Query: 287 QEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDE------KLKELKEKIAPFVNV 340
+L T E K ++ S R A+ DDE +L++L + ++ F+
Sbjct: 475 FSNPGLLGT----RSEFRKNFEIPILRS--RDADSTDDEIKKGEEQLQKLSDIVSKFIIR 528
Query: 341 HKGTVLQESLPGLRHSVVILQPDEFQK-------------RLCKAVEGVKSFVELNYCVS 387
+L + LP V+ + FQK ++ K V G + +
Sbjct: 529 RTNDILSKYLPCKYEHVIFVDLKPFQKNVYQNLIKSRDIKKMMKGVGGTQPLKAIGVLKK 588
Query: 388 LLSVHPSLLP-QQFFESFD----------VDSAKLARLKLDPEAGIKTRFLLILLELSTN 436
L + HPSLL + ++FD +++ + K + I RFL ++ ++
Sbjct: 589 LCN-HPSLLNLDEELDNFDNLEIPSDYNMSSNSRDIQPKYSGKFSILERFLH-KIKTESD 646
Query: 437 EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI 496
+K+++ S Y + L LI + R + L +DG ++ KRQ ++ NDP Q I
Sbjct: 647 DKIVLISNYTQTLDLIEKMCRTKHYGS-----LRLDGTMNINKRQKLVDRFNDPEGQEFI 701
Query: 497 MLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
L S+KA GINL+GA+R++L+D WNP ++QA++R +R GQK+ +Y I++ ++E
Sbjct: 702 FLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQKKDCFIYRFISTGSIE 761
Query: 557 WDKLRRQARKVWWSNMV 573
+RQ+ K+ S+ V
Sbjct: 762 EKIYQRQSMKMSLSSCV 778
>gi|409045739|gb|EKM55219.1| hypothetical protein PHACADRAFT_173301 [Phanerochaete carnosa
HHB-10118-sp]
Length = 799
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 152/541 (28%), Positives = 239/541 (44%), Gaps = 81/541 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ EG +F++K G I + GCI++ G GKT L +
Sbjct: 212 KVLRPHQIEGVQFMFKATTGMIVEHQY----------GCIMADEMGLGKTLQCLTLMWTL 261
Query: 128 MKLHPRC------RPVIIAPRSMLLTWEEEFKKW-GIDIPFYNLNKPELSGKENNGAVAL 180
+K P R +I P S++ W E KW G + L L G +N G
Sbjct: 262 LKQSPHAGRSTAERVIIACPASLVKNWGNEIVKWLGPGVVGTVL----LDGTDNLGKARR 317
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
+ RGR +L SY L G+ I GL + DE
Sbjct: 318 WIEQPRGRN--------------CTNPVLITSYEYLRTL--GESYPSICEMEIGLLLCDE 361
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-------RQEFGEVL 293
GH +N ++ ++ LS +K +RR+IL+GTP QN+ E + LS R EF +
Sbjct: 362 GHRLKNTESKTWQVLSTLKAKRRVILTGTPIQNDLTEYFSLLSFALPTYLGTRNEFRKNF 421
Query: 294 RTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGL 353
GR+ + + ++KLK+L ++ F+ +L + LP
Sbjct: 422 ENAIIRGRD----------ADASDAVREKSEQKLKDLAALVSKFIIRRTNDLLSKYLPVK 471
Query: 354 RHSVVILQPDEFQKRL-CKAVEG-----------VKSFVELNYCVSLLSVHPSLLP-QQF 400
VV + Q+ + C V+ K V +N L++ HP LLP +
Sbjct: 472 YEHVVFCHMSDIQRDMYCHFVDHPQTKTELRGKEAKPLVAINILKKLVN-HPELLPIGKE 530
Query: 401 FESFDVDSAKLARLKL---DPEAGIKTRFLLI-----LLELSTNEKVLVFSQYIEPLTLI 452
+ + D+ K A ++ D +FL++ + TN+K+++ S Y L +
Sbjct: 531 TKHAEWDNKKDAEKEMEMRDVHTEWSGKFLVLERFLDKMRQETNDKIVLISNYTSTLDVF 590
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
+ LR + R G +DGK +VKKRQ ++ N+P + L S+KA GINL+G
Sbjct: 591 EKLLRAK---RYG--YFRLDGKMNVKKRQEVVDKFNNPEVPEFVFLLSSKAGGCGINLIG 645
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNM 572
A+R++L D WNP ++QA++R +R GQK+ VY I + T+E +RQA+K S+
Sbjct: 646 ANRLILFDPDWNPASDQQALARVWRDGQKKECFVYRFICTGTIEEKVFQRQAQKQSLSSA 705
Query: 573 V 573
V
Sbjct: 706 V 706
>gi|254583686|ref|XP_002497411.1| ZYRO0F04906p [Zygosaccharomyces rouxii]
gi|238940304|emb|CAR28478.1| ZYRO0F04906p [Zygosaccharomyces rouxii]
Length = 848
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 153/561 (27%), Positives = 253/561 (45%), Gaps = 86/561 (15%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDEL---------KNSTS--TGGGNGCIISHAPGTGK 116
K + PHQ EG F+++ + G + D L +N+T G GCI++ G GK
Sbjct: 235 KILRPHQVEGVRFLYRCVTGLVMKDFLDKELVTKGVENTTQEVNRGAYGCIMADEMGLGK 294
Query: 117 TGLTLVFLQAYMKLHPRCR-----PVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSG 171
T + + ++ P+ + +I+ P S++ W E KW + L+ + G
Sbjct: 295 TLQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNWANELDKW---LGPGTLSPLAIDG 351
Query: 172 KE---NNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLSYRLFEKLVSG 222
K+ NNG+V+ G I +SW G +L +SY + +
Sbjct: 352 KKSSLNNGSVS------------GAI-----HSWAQAQGRNIVKPVLIISYETLRR--NT 392
Query: 223 DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
D+L + GL + DEGH +N D+ F +L I RR+ILSGTP QN+ E L
Sbjct: 393 DQLKNCNV---GLMLADEGHRLKNADSLTFTSLDSIDCSRRVILSGTPIQNDLSEYFALL 449
Query: 283 SLVRQEFGEVLRTVRKSGR-EISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVH 341
+ RK+ I K++ A R + EKL +L ++ F+
Sbjct: 450 NFSNPGLLGSRSEFRKNFEIPILKSRDADATDEDVR----KGQEKLSQLSYVVSKFIIRR 505
Query: 342 KGTVLQESLPGLRHSVVILQPDEFQ-------------KRLCKAVEGVKSFVELNYCVSL 388
+L + LP V+ + FQ K+L K V G + + L
Sbjct: 506 TNDILAKYLPCKYEHVIFVNLTPFQRELYKKNVESRDVKKLVKGVGGTQPLKAIGLLKKL 565
Query: 389 LSVHPSLLP-QQFFESFDVDSA----------KLARLKLDPEAGIKTRFLLILLELSTNE 437
+ HP L+ + E+ D S K ++K + I RFL + +++
Sbjct: 566 CN-HPDLVDFNEEIENLDEISIPDDYEWNSKRKDLQVKYSSKFSILERFL-AKIRSESDD 623
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
K+++ S Y + L LI + R + R G + +DG + KRQ ++ NDP Q +
Sbjct: 624 KIVIISNYTQTLDLIEKLCRQK---RYGS--VRLDGTMGINKRQKLVDRFNDPEGQEFVF 678
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L S+KA GINL+GA+R++LLD WNP ++QA++R +R GQK+ +Y I++ ++E
Sbjct: 679 LLSSKAGGCGINLIGANRLILLDPDWNPAADQQALARVWRDGQKKDCFIYRFISTGSIEE 738
Query: 558 DKLRRQARKVWWSNMVFPSSD 578
+RQ+ K+ S+ V + +
Sbjct: 739 KIYQRQSMKLSLSSCVVDAKE 759
>gi|115482344|ref|NP_001064765.1| Os10g0457700 [Oryza sativa Japonica Group]
gi|113639374|dbj|BAF26679.1| Os10g0457700, partial [Oryza sativa Japonica Group]
Length = 1319
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 159/596 (26%), Positives = 257/596 (43%), Gaps = 123/596 (20%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P + K+ PHQ G F+W+N+ + +K S G GCI++H G GKT +
Sbjct: 707 IPSSISAKLKPHQVSGIRFMWENV-----IQSVKKVKSGDKGFGCILAHNMGLGKTFQVI 761
Query: 122 VFLQAYMKLHPRC------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENN 175
FL M RC +I+ P ++L W++EF KW P + KP
Sbjct: 762 TFLYTVM----RCIQLGLRTALIVTPVNVLHNWKKEFIKW---CPAES--KP-------- 804
Query: 176 GAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG---------DELS 226
V ++++ R I+Y+ L W++ G+L + Y F L G +E++
Sbjct: 805 LRVYMLEDVPRAN-----IQYL-LKKWRIKGGVLLIGYSSFRNLSLGRSARDKTVANEIT 858
Query: 227 GILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR 286
L P + V DE H +N +AL +++T+RRI L+G+P QNN E + VR
Sbjct: 859 NALQCGPDILVCDEAHIIKNRRADTTQALKQVRTQRRIALTGSPLQNNLMEYYCMVDFVR 918
Query: 287 QEF-GEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTV 345
+ + G + I +H + S + N R L E++ FV V
Sbjct: 919 EGYLGSSHEFRNRFQNPIENGQHTNSTSDDVKIMNQRS----HILYEQLKGFVQRMDMNV 974
Query: 346 LQESLPGLRHSVVILQPDEFQKRLCK----------AVEGVKSFVELNY-----CVSLLS 390
++ LP + VV ++ + Q++L + + KSF + ++L+
Sbjct: 975 VKNDLPEKKVFVVTVKLSQLQRKLYRRFLDVNGFSSSAASEKSFQRSGFFAKYQTLALIW 1034
Query: 391 VHPSLLP---------QQFFESFDVDSA---------------------KLARLKLD--- 417
HP LL Q+ ESF +D + +L++ D
Sbjct: 1035 NHPGLLQMAKQKGNLRQEDVESFLMDESSSDDNIENYLPNGEKLRSRNDQLSKKSSDVVN 1094
Query: 418 ---------------PEAGIKTRFLLILLELST----NEKVLVFSQYIEPLTLIMEQL-- 456
EA + +L+L LS+ +K LVFSQ + L L+ L
Sbjct: 1095 EESNWWENLLDENAYKEADYSGKMVLLLDILSSCSELGDKALVFSQSLSTLDLVEFYLSK 1154
Query: 457 -----RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS-QARIMLASTKACCEGINL 510
+ W++G++ +DG +RQ+ + NDP + + + L ST+A GINL
Sbjct: 1155 LQVNGKEGKYWKQGKDWYRIDGSTPSSERQNLVERFNDPENIRVKCTLISTRAGYIGINL 1214
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
A+RV+LLD WNP + QAI R +R GQ + V+ Y L+ T+E +RQ K
Sbjct: 1215 HSANRVILLDGSWNPTHDLQAIYRVWRYGQTKPVYAYRLMAHATMEEKIYKRQVTK 1270
>gi|391342370|ref|XP_003745493.1| PREDICTED: DNA repair and recombination protein RAD54-like
[Metaseiulus occidentalis]
Length = 679
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 153/552 (27%), Positives = 244/552 (44%), Gaps = 82/552 (14%)
Query: 58 VWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT 117
V +V ++ + + PHQREG +F++ + G G GCI++ G GKT
Sbjct: 102 VHVVVDPNLTRVLRPHQREGVKFMYDCLTGA----------QIEGSYGCIMADEMGLGKT 151
Query: 118 GLTLVFLQAYMKLHPR------CRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSG 171
T+ + + ++ P + +I+ P S++ W E KKW D Y + SG
Sbjct: 152 LQTITVIWSLVRQGPTYGKPTVSKALIVTPSSLVKNWANELKKWLGDRARY-VTLEGGSG 210
Query: 172 KENNGAVA-LMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILL 230
K + +A + NR IL LSY ++ S +
Sbjct: 211 KSVDDDIAGFLSNR--------------------CVPILILSYETLRLHIAALRDSSSV- 249
Query: 231 DLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFG 290
GL V DEGH +N D +++L+ +KT RR++LSGTP QN+ E SLV
Sbjct: 250 ---GLIVCDEGHRLKNSDNQTYRSLNELKTPRRLLLSGTPIQNDLLEY---FSLVHFVNN 303
Query: 291 EVLRTVRKSGREISKAKHASLISS--IGRCANHRD--DEKLKELKEKIAPFVNVHKGTVL 346
+L T G E K ++ S A+ R EKL EL + + +L
Sbjct: 304 GILGT----GAEFRKKFENPILRSREADSTADQRSKGQEKLDELVGIVNRCLIRRTNALL 359
Query: 347 QESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSV--------HPSLLPQ 398
+ LP VV + QK KA + + C +L ++ HPSL
Sbjct: 360 SQYLPIKHELVVCCNLTDAQK---KAYKDFSKSYDQKDCTALAAITTLKKICNHPSL--- 413
Query: 399 QFFESFDVDSAKLARLKLDPEAGIKTRFL---LILLELSTNEKVLVFSQYIEPLTLIMEQ 455
+ ++ A K DP K L L ++ ++N+KV++ S Y + + L +
Sbjct: 414 -------AEESRAASEKFDPSQSGKFHILDGLLAAIKATSNDKVVLVSNYTQTMELFEQL 466
Query: 456 LRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515
R R G +DG KKR + ND +S + L S+KA G+N++GA+R
Sbjct: 467 CRMR-----GYGYFRLDGTMSSKKRDKLVTQFNDVNSSEMVFLLSSKAGGCGLNIIGANR 521
Query: 516 VVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFP 575
+V+ D WNP ++QA++R +R GQ++ +VY LI++ ++E +RQ K S++V
Sbjct: 522 LVMFDPDWNPASDQQAMARVWRDGQRKPCYVYRLISTGSIEEKIFQRQTHKTILSSVVVD 581
Query: 576 SSDGGGNDQTTA 587
SS +TA
Sbjct: 582 SSAQAERHFSTA 593
>gi|452004580|gb|EMD97036.1| hypothetical protein COCHEDRAFT_118646 [Cochliobolus heterostrophus
C5]
Length = 785
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 157/556 (28%), Positives = 238/556 (42%), Gaps = 89/556 (16%)
Query: 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLV 122
PR + K + PHQ EG +F+++ G ID NGCI++ G GKT +
Sbjct: 183 PR-LAKVLRPHQVEGVKFLYRATTGMID----------PKANGCIMADEMGLGKTLQCIT 231
Query: 123 FLQAYMKLHPRC------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNG 176
+ +K P + VI P S++ W E KW L K ++ +G
Sbjct: 232 LMWTLLKQSPEAGKSTIQKCVIACPSSLVRNWANELVKW--------LGKDAVTPFAIDG 283
Query: 177 AVALMDNRKRGRGKVGLIRYVKLYSWKMGTGI----LGLSYRLFEKLVSGDELSGILLDL 232
+ K LI+ ++ +S G + L +SY V DE +
Sbjct: 284 KAS----------KEELIQQIRQWSIASGRAVVRPVLIVSYETLRLYV--DEFGQTPI-- 329
Query: 233 PGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEV 292
GL + DEGH +N D+ F AL+ + +RR+ILSGTP QN+ E L+ +
Sbjct: 330 -GLMLCDEGHRLKNGDSLTFTALNSLNVQRRVILSGTPIQNDLSEYFALLNFANPGYLGT 388
Query: 293 LRTVRKSGREISKAKHASLISSIGRCANHRD------DEKLKELKEKIAPFVNVHKGTVL 346
RK EI K GR AN D +E+L EL + F+ +L
Sbjct: 389 RMEFRKQF-EIPILK--------GRDANGTDADIQKGNERLTELLGLVNKFIIRRTNDIL 439
Query: 347 QESLPGLRHSVVILQPDEFQKRLCKAV---EGVKSFVELNYCVSL--------LSVHPSL 395
+ LP VV FQK L V+S + L L HP L
Sbjct: 440 SKYLPVKYEHVVFCNLAPFQKDLYNHFIKSPDVQSLLRGKGSQPLKVIGMLKKLCNHPDL 499
Query: 396 -------------LPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVF 442
LP+ F + + ++ + + R +L + TN+K+++
Sbjct: 500 LNLPEDLPGCEDKLPEDFVQKDARGRDREVKVWYSGKMAVLDR-MLARIRAETNDKIVLI 558
Query: 443 SQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTK 502
S Y + L + R R G +DG +V KRQ ++ NDP S + L S+K
Sbjct: 559 SNYTQTLDIFAMLCRSR-----GYGCFRLDGTMNVSKRQKLVDKFNDPESPEFVFLLSSK 613
Query: 503 ACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRR 562
A G+NL+GA+R+VL D WNP ++QA++R +R GQK+ VY IT+ T+E +R
Sbjct: 614 AGGCGLNLIGANRLVLFDPDWNPAADQQALARVWRDGQKKDCFVYRFITTGTIEEKVFQR 673
Query: 563 QARKVWWSNMVFPSSD 578
Q+ K S+ V S++
Sbjct: 674 QSHKQSLSSCVVDSAE 689
>gi|336467451|gb|EGO55615.1| hypothetical protein NEUTE1DRAFT_86106 [Neurospora tetrasperma FGSC
2508]
gi|350287905|gb|EGZ69141.1| hypothetical protein NEUTE2DRAFT_115349 [Neurospora tetrasperma
FGSC 2509]
Length = 835
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 156/556 (28%), Positives = 238/556 (42%), Gaps = 89/556 (16%)
Query: 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLV 122
PR + K + PHQ EG F+++ + G ID NGCI++ G GKT +
Sbjct: 219 PR-LAKVLRPHQIEGVRFMYRCVTGMID----------EKANGCIMADEMGLGKTLQCIT 267
Query: 123 FLQAYMKLHPRC------RPVIIAPRSMLLTWEEEFKKW-GID--IPFYNLNKPELSGKE 173
L +K P + ++ P S++ W E KW G D PF + GK
Sbjct: 268 LLWTLLKQSPDAGKSTIQKAIVACPSSLVRNWANELVKWLGADAITPF------AIDGKA 321
Query: 174 NNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLSYRLFEKLVSGDELSG 227
+ K L R +L W + +G ++ +SY ++ DEL G
Sbjct: 322 S---------------KEELTR--QLRQWAIASGRSVTRPVIIVSYETLR--LNVDELKG 362
Query: 228 ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
+ GL + DEGH +N D+ F AL+ + RR+ILSGTP QN+ E +S
Sbjct: 363 TPI---GLMLCDEGHRLKNGDSQTFSALNSLNVSRRVILSGTPIQNDLSEYFALISFANP 419
Query: 288 E-FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVL 346
+ G L ++ I + + A R DE L EL + F+ +L
Sbjct: 420 DLLGTRLEFRKRFEIPILRGRDA----DASEAERKRGDECLVELLAIVNKFIIRRTNDIL 475
Query: 347 QESLPGLRHSVVILQPDEFQKRLCKAV------------EGVKSFVELNYCVSLLSVHPS 394
+ LP VV FQ L +G + +N L + HP
Sbjct: 476 SKYLPVKYEHVVFCNLAPFQLDLYNYFVASPDIQALLRGKGSQPLKAINILKKLCN-HPD 534
Query: 395 LL---------PQQFFESFDVDSAKLARLKLDPEAGIKTRFL---LILLELSTNEKVLVF 442
LL Q + E + A+ + P K + L L + TN+K+++
Sbjct: 535 LLDLSADLPGCEQYWPEDYVPKEARGRDRDVKPWYSGKMQVLDRMLARIRADTNDKIVLI 594
Query: 443 SQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTK 502
S Y + L L R+R L +DG +V KRQ ++ NDP + L S+K
Sbjct: 595 SNYTQTLDLFERLCRNR-----QYGCLRLDGTMNVNKRQKLVDKFNDPEGDEFVFLLSSK 649
Query: 503 ACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRR 562
A G+NL+GA+R+VL D WNP ++QA++R +R GQK+ VY I + T+E +R
Sbjct: 650 AGGCGLNLIGANRLVLFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQR 709
Query: 563 QARKVWWSNMVFPSSD 578
Q+ K S+ V S++
Sbjct: 710 QSHKQSLSSCVVDSAE 725
>gi|255728815|ref|XP_002549333.1| DNA repair and recombination protein RAD54 [Candida tropicalis
MYA-3404]
gi|240133649|gb|EER33205.1| DNA repair and recombination protein RAD54 [Candida tropicalis
MYA-3404]
Length = 847
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 148/548 (27%), Positives = 243/548 (44%), Gaps = 86/548 (15%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ G +F+++ AG ID GCI++ G GKT L +
Sbjct: 250 KILRPHQVAGVKFLYRCTAGLID----------AKAKGCIMADEMGLGKTLQCLTLMWTL 299
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ PR + +I+ P S++ W E KW + L S K ++ AL
Sbjct: 300 LRQSPRGKKTIDKCIIVCPSSLVRNWANEIVKWLGEGALTPLAVDGKSTKSSDLGTALQQ 359
Query: 183 -NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
+GR ++R V L +SY + V D+L+G + GL + DEG
Sbjct: 360 WASAQGRN---IVRPV-----------LIISYETLRRNV--DKLAGTEV---GLMLADEG 400
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-------RQEFGEVLR 294
H +N ++ F AL+ ++ RR+ILSGTP QN+ E L+ R EF +
Sbjct: 401 HRLKNGESLTFTALNSLRCERRVILSGTPIQNDLSEYFALLNFANPGYLGTRNEFKKNFE 460
Query: 295 TVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLR 354
GR+ + + D+KL EL + ++ F+ +L + LP
Sbjct: 461 NAILRGRDADATEKE----------REKGDQKLVELSQLVSKFIIRRTNDILSKYLPVKY 510
Query: 355 HSVVILQPDEFQKRLC----------KAVEGVKSF-VELNYCVSLLSVHPSLL------- 396
V+ QK L K + G+ S ++ + L HP LL
Sbjct: 511 EYVLFTGLSPMQKSLYSHFINSPDMKKLIRGIGSQPLKAIGLLKKLCSHPDLLDLPDDIE 570
Query: 397 ------PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLI-----LLELSTNEKVLVFSQY 445
P + S + + + + +F+++ ++ TN+K+++ S Y
Sbjct: 571 GCDHLIPDDYESSISHNGGRGGFRNSEVQTWFSVKFMILERFLHKIKKETNDKIVLISNY 630
Query: 446 IEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACC 505
+ L LI + R N + G VL +DG + KRQ ++ N+P I L S+KA
Sbjct: 631 TQTLDLIEKMCR---NKKYG--VLRLDGTLSINKRQKLVDKFNNPDGSEFIFLLSSKAGG 685
Query: 506 EGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQAR 565
GINL+GA+R+VL+D WNP ++QA++R +R GQK+ +Y I++ T+E +RQ+
Sbjct: 686 CGINLIGANRLVLIDPDWNPASDQQALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSM 745
Query: 566 KVWWSNMV 573
K+ S+ V
Sbjct: 746 KLQLSSCV 753
>gi|85092588|ref|XP_959470.1| DNA repair and recombination protein RAD54 [Neurospora crassa
OR74A]
gi|28920899|gb|EAA30234.1| DNA repair and recombination protein RAD54 [Neurospora crassa
OR74A]
gi|40804592|emb|CAF05853.1| Rad54 homolog MUS-25 [Neurospora crassa]
Length = 831
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 154/551 (27%), Positives = 235/551 (42%), Gaps = 88/551 (15%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ EG F+++ + G ID NGCI++ G GKT + L
Sbjct: 219 KVLRPHQIEGVRFMYRCVTGMID----------EKANGCIMADEMGLGKTLQCITLLWTL 268
Query: 128 MKLHPRC------RPVIIAPRSMLLTWEEEFKKW-GID--IPFYNLNKPELSGKENNGAV 178
+K P + ++ P S++ W E KW G D PF + GK +
Sbjct: 269 LKQSPDAGKSTIQKAIVACPSSLVRNWANELVKWLGADAITPF------AIDGKAS---- 318
Query: 179 ALMDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLSYRLFEKLVSGDELSGILLDL 232
K L R +L W + +G ++ +SY ++ DEL G +
Sbjct: 319 -----------KEELTR--QLRQWAIASGRSVTRPVIIVSYETLR--LNVDELKGTPI-- 361
Query: 233 PGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGE 291
GL + DEGH +N D+ F AL+ + RR+ILSGTP QN+ E +S + G
Sbjct: 362 -GLMLCDEGHRLKNGDSQTFSALNSLNVSRRVILSGTPIQNDLSEYFALISFANPDLLGT 420
Query: 292 VLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLP 351
L ++ I + + A R DE L EL + F+ +L + LP
Sbjct: 421 RLEFRKRFEIPILRGRDA----DASEAERKRGDECLVELLAIVNKFIIRRTNDILSKYLP 476
Query: 352 GLRHSVVILQPDEFQKRLCKAV------------EGVKSFVELNYCVSLLSVHPSLLP-- 397
VV FQ L +G + +N L + HP LL
Sbjct: 477 VKYEHVVFCNLAPFQLDLYNYFVASPDIQALLRGKGSQPLKAINILKKLCN-HPDLLDLS 535
Query: 398 -------QQFFESFDVDSAKLARLKLDPEAGIKTRFL---LILLELSTNEKVLVFSQYIE 447
Q + E + A+ + P K + L L + TN+K+++ S Y +
Sbjct: 536 ADLPGCEQYWPEDYVPKEARGRDRDVKPWYSGKMQVLDRMLARIRADTNDKIVLISNYTQ 595
Query: 448 PLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEG 507
L L R+R L +DG +V KRQ ++ NDP + L S+KA G
Sbjct: 596 TLDLFERLCRNR-----QYGCLRLDGTMNVNKRQKLVDKFNDPEGDEFVFLLSSKAGGCG 650
Query: 508 INLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567
+NL+GA+R+VL D WNP ++QA++R +R GQK+ VY I + T+E +RQ+ K
Sbjct: 651 LNLIGANRLVLFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQSHKQ 710
Query: 568 WWSNMVFPSSD 578
S+ V S++
Sbjct: 711 SLSSCVVDSAE 721
>gi|110289185|gb|ABB47753.2| SNF2 domain-containing protein, putative, expressed [Oryza sativa
Japonica Group]
Length = 1476
Score = 166 bits (420), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 156/596 (26%), Positives = 254/596 (42%), Gaps = 123/596 (20%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P + K+ PHQ G F+W+N+ + +K S G GCI++H G GKT +
Sbjct: 707 IPSSISAKLKPHQVSGIRFMWENV-----IQSVKKVKSGDKGFGCILAHNMGLGKTFQVI 761
Query: 122 VFLQAYMKLHPRC------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENN 175
FL M RC +I+ P ++L W++EF KW +
Sbjct: 762 TFLYTVM----RCIQLGLRTALIVTPVNVLHNWKKEFIKW-------------CPAESKP 804
Query: 176 GAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG---------DELS 226
V ++++ R I+Y+ L W++ G+L + Y F L G +E++
Sbjct: 805 LRVYMLEDVPRAN-----IQYL-LKKWRIKGGVLLIGYSSFRNLSLGRSARDKTVANEIT 858
Query: 227 GILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR 286
L P + V DE H +N +AL +++T+RRI L+G+P QNN E + VR
Sbjct: 859 NALQCGPDILVCDEAHIIKNRRADTTQALKQVRTQRRIALTGSPLQNNLMEYYCMVDFVR 918
Query: 287 QEF-GEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTV 345
+ + G + I +H + S + N R L E++ FV V
Sbjct: 919 EGYLGSSHEFRNRFQNPIENGQHTNSTSDDVKIMNQRS----HILYEQLKGFVQRMDMNV 974
Query: 346 LQESLPGLRHSVVILQPDEFQKRLCK----------AVEGVKSFVELNY-----CVSLLS 390
++ LP + VV ++ + Q++L + + KSF + ++L+
Sbjct: 975 VKNDLPEKKVFVVTVKLSQLQRKLYRRFLDVNGFSSSAASEKSFQRSGFFAKYQTLALIW 1034
Query: 391 VHPSLLP---------QQFFESFDVDSA---------------------KLARLKLD--- 417
HP LL Q+ ESF +D + +L++ D
Sbjct: 1035 NHPGLLQMAKQKGNLRQEDVESFLMDESSSDDNIENYLPNGEKLRSRNDQLSKKSSDVVN 1094
Query: 418 ---------------PEAGIKTRFLLILLELST----NEKVLVFSQYIEPLTLIMEQL-- 456
EA + +L+L LS+ +K LVFSQ + L L+ L
Sbjct: 1095 EESNWWENLLDENAYKEADYSGKMVLLLDILSSCSELGDKALVFSQSLSTLDLVEFYLSK 1154
Query: 457 -----RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS-QARIMLASTKACCEGINL 510
+ W++G++ +DG +RQ+ + NDP + + + L ST+A GINL
Sbjct: 1155 LQVNGKEGKYWKQGKDWYRIDGSTPSSERQNLVERFNDPENIRVKCTLISTRAGYIGINL 1214
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
A+RV+LLD WNP + QAI R +R GQ + V+ Y L+ T+E +RQ K
Sbjct: 1215 HSANRVILLDGSWNPTHDLQAIYRVWRYGQTKPVYAYRLMAHATMEEKIYKRQVTK 1270
>gi|328874980|gb|EGG23345.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
Length = 937
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 155/544 (28%), Positives = 247/544 (45%), Gaps = 96/544 (17%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGG--GNGCIISHAPGTGKTGLTLVFLQA 126
K+ PHQR+G +F++ + G GG GNGCI++ G GK+ + L
Sbjct: 292 KLRPHQRQGVQFMFDCLLG-----------FRGGYKGNGCILADDMGLGKSIQAIAILWT 340
Query: 127 YMKLHPRCRP-----VIIAPRSMLLTWEEEFKKW---GIDIPFYNLNKPELSGKENNGAV 178
+K P P VI+AP S++ W +E KKW GI KP V
Sbjct: 341 LLKQGPNGLPTAERAVIVAPSSLVGNWCKELKKWLGEGI--------KP----------V 382
Query: 179 ALMDNRKRGRGKVGLIRYVKLYSWKMGT-GILGLSY---RLF-EKLVSGDELSGILLDLP 233
A+ + K GR + L ++GT +L +SY R++ E+++ ++S I
Sbjct: 383 AIGGSTKYGRAR--------LAELELGTKDVLVISYDQLRIYCEEII---KISSI----- 426
Query: 234 GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVL 293
GL + DEGH +N + KA+S I T RR+ILSGTP QN+ E ++ V
Sbjct: 427 GLVICDEGHRLKNPEIKTTKAVSMIPTPRRVILSGTPIQNDLNEFFAMVNFVNP------ 480
Query: 294 RTVRKSGREISKAKHASLISSIGRCANHRDD----EKLKELKEKIAPFVNVHKGTVLQES 349
V K+ A +++S A+ D E+ EL F+ V +
Sbjct: 481 -GVLKNMSTFQNVYDAPILASRNPDASDEDKRLGRERSAELTRLTQQFILRRTAAVNVQY 539
Query: 350 LPGLRHSVVILQPDEFQKRLCK----------------AVEGVKSFVELNYCVSLLSVHP 393
LP V ++ Q ++ K A+ + + +L C L+ +
Sbjct: 540 LPKKIEYTVFIKLSPLQHKIYKHLVDTIKNQQFGNFSGALPLITTLKKLTNCPELIYLPD 599
Query: 394 SLLPQQFFESFDVDSAKLARLKL-DPEAGIKTRF---LLILLELSTNEKVLVFSQYIEPL 449
P Q +S K K+ P+ K +F LL + ++ ++V++ S Y + L
Sbjct: 600 KEDPTQVNDSVLKLFPKEWNPKVFQPQYSGKLQFVDKLLAGIRKTSKDRVVIISNYTQTL 659
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509
T++ +R R G E +DG V RQ +++ NDPS + L S+KA G+N
Sbjct: 660 TVLAGMMRTR-----GYEFFQLDGSTSVDNRQKMVDLFNDPSRNEFVFLLSSKAGGVGLN 714
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
L+GA+ +VL D WNP + QA++R +R GQK+VV +Y +++ T+E +RQ K+
Sbjct: 715 LIGANHLVLYDPDWNPANDLQAMARVWREGQKKVVSIYRTLSTGTIEEKIFQRQITKMAL 774
Query: 570 SNMV 573
S V
Sbjct: 775 STSV 778
>gi|341883705|gb|EGT39640.1| hypothetical protein CAEBREN_07872 [Caenorhabditis brenneri]
Length = 1092
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 147/554 (26%), Positives = 250/554 (45%), Gaps = 87/554 (15%)
Query: 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQ 125
V K + PHQREG +F+W + G+++ E +GCI++ G GKT + L
Sbjct: 458 VGKILRPHQREGVKFMW-DCVTGVNIPEF---------HGCIMADEMGLGKTLQCISLLW 507
Query: 126 AYMKLHPRCRP-----VIIAPRSMLLTWEEEFKKW-GIDIPFYNLNKPELSGKENNGAVA 179
++ P P +I+ P S++ W++E KKW G + P SGK +
Sbjct: 508 TLLRQSPDACPTVSKSIIVCPSSLVKNWDKEIKKWLGTRLSAM----PVDSGKREQIIAS 563
Query: 180 LMDNRKRGRGKVGL-IRYVKLYSWKMGTGILGLSY---RLFEKLVSGDELSGILLDLPGL 235
L ++ + K+ ++ + +L +SY RL+ ++ E+ G+
Sbjct: 564 LSESSVVLQNKLRFPASFMADSKMRCAIPVLIISYETFRLYANILHSGEV--------GI 615
Query: 236 FVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQE-----------LENTLSL 284
+ DEGH +N D ++ALS +K RR+++SGTP QN+ E L T S
Sbjct: 616 VICDEGHRLKNSDNLTYQALSGLKCVRRVLISGTPIQNDLLEYFSLVNFVNPGLLGTASE 675
Query: 285 VRQEFGEVL---RTVRKSGREISKA--KHASLISSIGRCANHRDDEKLKELKEKIAPFVN 339
R++F + R S + K K ++S + +C R L + +
Sbjct: 676 FRKKFENAILKGRDADASSEDQKKGEEKTKEMVSLVEKCIIRRTSALLTKYLPVKYEHII 735
Query: 340 VHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSL--LSVHPSLLP 397
K + LQE+L L E Q R+ + +G + L++ L L HP L+
Sbjct: 736 CCKNSTLQETLYNK------LIECEKQNRIAEKDKGATASA-LSFITHLKKLCNHPYLVY 788
Query: 398 QQFF---------------ESFDVDSAKLARLKLDPEAGIKTR---FLLILLELSTNEKV 439
++F ESF+ S DP K + ++L + +T++K
Sbjct: 789 EEFQKPDNRFRDKCLSAFPESFNPKS-------FDPSFSGKMKVLDYILAVTRKTTDDKF 841
Query: 440 LVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
++ S Y + + M + R G + + +DG +K+R ++ NDPSS L
Sbjct: 842 VLVSNYTQTIDQFMALCKLR-----GYDFVRLDGSMSIKQRSKIVDTFNDPSSSIFCFLL 896
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
S+KA G+NL+GA+R+V+ D WNP + QA++R +R GQK+ +Y L+ + ++E
Sbjct: 897 SSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKTCFIYRLLATGSIEEKM 956
Query: 560 LRRQARKVWWSNMV 573
+RQ K S+ V
Sbjct: 957 FQRQTHKKALSSCV 970
>gi|213405783|ref|XP_002173663.1| DNA repair and recombination protein RAD54 [Schizosaccharomyces
japonicus yFS275]
gi|212001710|gb|EEB07370.1| DNA repair and recombination protein RAD54 [Schizosaccharomyces
japonicus yFS275]
Length = 853
Score = 166 bits (419), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 155/542 (28%), Positives = 235/542 (43%), Gaps = 88/542 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ EG +F++K + G ID NGCI++ G GKT + L +K
Sbjct: 274 PHQIEGVKFLYKCVTGRID----------KVANGCIMADEMGLGKTLQCIALLWTLLKQS 323
Query: 132 PRC------RPVIIAPRSMLLTWEEEFKKW-GID--IPFYNLNKPELSGKENNGAVALMD 182
P + +I P S++ W E KW G D PF K S K+ L
Sbjct: 324 PLGGKPTIEKAIITCPSSLVKNWANELVKWLGKDAVTPFIVDGK---STKQELIEALLQW 380
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
RGR + R V + S++ + R + + + G E+ GL + DEGH
Sbjct: 381 AHVRGRQ---ITRPVLIVSYE--------TLRSYVEYLKGAEV--------GLLLCDEGH 421
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-------RQEFGEVLRT 295
+N ++ F AL+ + RRR+ILSGTP QN+ E + L+ RQ+F +
Sbjct: 422 RLKNSESLTFTALNSLDVRRRVILSGTPIQNDLSEYFSLLNFANPGLLGSRQDFRKNYEI 481
Query: 296 VRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRH 355
GR+ ++ + D KL EL + F+ +L + LP
Sbjct: 482 PILRGRDADGSEKDKELG----------DAKLAELSSIVNRFIIRRTNDILSKYLPVKYE 531
Query: 356 SVVILQPDEFQKRLC----------KAVEGVKSF-VELNYCVSLLSVHPSLL-------- 396
VV EFQ L K + G S ++ + L HP LL
Sbjct: 532 HVVFCNLSEFQTALYSYFITSPEIRKILRGAGSQPLKAIGILKKLCNHPDLLHITEDFEG 591
Query: 397 -----PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTL 451
PQ F + L + + R +L ++ T++K+++ S Y L L
Sbjct: 592 CEKLFPQGFVPKEHRGRDRHVDSSLSGKMLVLER-MLYRIKKETDDKIVLISNYTSTLDL 650
Query: 452 IMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLV 511
+ R R G + L +DG +V KRQ ++ NDP A + L S+KA GINL+
Sbjct: 651 FEQVCRTR-----GYKALRLDGTMNVSKRQRLVDEFNDPEKDAFVFLLSSKAGGCGINLI 705
Query: 512 GASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSN 571
GA+R++L D WNP ++QA++R +R GQK+ VY I + T+E +RQ+ K S+
Sbjct: 706 GANRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSS 765
Query: 572 MV 573
V
Sbjct: 766 CV 767
>gi|451853165|gb|EMD66459.1| hypothetical protein COCSADRAFT_298475 [Cochliobolus sativus
ND90Pr]
Length = 812
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 155/551 (28%), Positives = 234/551 (42%), Gaps = 88/551 (15%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ EG +F+++ G ID NGCI++ G GKT + +
Sbjct: 214 KVLRPHQVEGVKFLYRATTGMID----------PKANGCIMADEMGLGKTLQCITLMWTL 263
Query: 128 MKLHPRC------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
+K P + VI P S++ W E KW L K ++ +G +
Sbjct: 264 LKQSPDAGKSTIQKCVIACPSSLVRNWANELVKW--------LGKDAVTPFAIDGKAS-- 313
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGI----LGLSYRLFEKLVSGDELSGILLDLPGLFV 237
K LI+ ++ +S G + L +SY V DE + GL +
Sbjct: 314 --------KEELIQQIRQWSIASGRAVVRPVLIVSYETLRLYV--DEFGQTPI---GLML 360
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DEGH +N D+ F AL+ + +RR+ILSGTP QN+ E L+ + R
Sbjct: 361 CDEGHRLKNGDSLTFTALNSLNVQRRVILSGTPIQNDLSEYFALLNFANPGYLGTRMEFR 420
Query: 298 KSGREISKAKHASLISSIGRCANHRD------DEKLKELKEKIAPFVNVHKGTVLQESLP 351
K EI K GR AN D E+L EL + F+ +L + LP
Sbjct: 421 KQF-EIPILK--------GRDANGTDADVQKGTERLTELLGLVNKFIIRRTNDILSKYLP 471
Query: 352 GLRHSVVILQPDEFQKRLCKAV---EGVKSFVELNYCVSL--------LSVHPSL----- 395
VV FQK L V+S + L L HP L
Sbjct: 472 VKYEHVVFCNLAPFQKDLYNHFIKSPDVQSLLRGKGSQPLKVIGMLKKLCNHPDLLNLPE 531
Query: 396 --------LPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIE 447
LP+ F + + ++ + + R +L + TN+K+++ S Y +
Sbjct: 532 DLPGCEDKLPEDFVQKDARGRDREVKVWYSGKMAVLDR-MLARIRAETNDKIVLISNYTQ 590
Query: 448 PLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEG 507
L + R R G +DG +V KRQ ++ NDP S + L S+KA G
Sbjct: 591 TLDIFAMLCRSR-----GYGCFRLDGTMNVSKRQKLVDKFNDPESPEFVFLLSSKAGGCG 645
Query: 508 INLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567
+NL+GA+R+VL D WNP ++QA++R +R GQK+ VY IT+ T+E +RQ+ K
Sbjct: 646 LNLIGANRLVLFDPDWNPAADQQALARVWRDGQKKDCFVYRFITTGTIEEKVFQRQSHKQ 705
Query: 568 WWSNMVFPSSD 578
S+ V S++
Sbjct: 706 SLSSCVVDSAE 716
>gi|367032442|ref|XP_003665504.1| hypothetical protein MYCTH_2309353 [Myceliophthora thermophila ATCC
42464]
gi|347012775|gb|AEO60259.1| hypothetical protein MYCTH_2309353 [Myceliophthora thermophila ATCC
42464]
Length = 804
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 150/548 (27%), Positives = 240/548 (43%), Gaps = 82/548 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ +G +F+++ + G ID +GCI++ G GKT + L
Sbjct: 213 KVLRPHQIDGVKFMYRCVTGMID----------EKAHGCIMADEMGLGKTLQCITLLWTL 262
Query: 128 MKLHPRC------RPVIIAPRSMLLTWEEEFKKW-GIDIPFYNLNKPELSGKENNGAVAL 180
+K P + ++ P S++ W E KW G D +N + GK +
Sbjct: 263 LKQSPEAGKPTIQKAIVACPSSLVRNWANELTKWLGADA----INPFAIDGKAS------ 312
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLSYRLFEKLVSGDELSGILLDLPG 234
K L R +L W + TG ++ +SY ++ +EL + G
Sbjct: 313 ---------KEELTR--QLRQWAISTGRSITRPVIIVSYETLR--LNVEELRNTPI---G 356
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVL 293
L + DEGH +N D+ F AL+ + RR+ILSGTP QN+ E ++ + G L
Sbjct: 357 LMLCDEGHRLKNGDSQTFNALNSLNVSRRVILSGTPIQNDLSEYFALINFANPDLLGTRL 416
Query: 294 RTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGL 353
++ I + + A R DE L EL + F+ +L + LP
Sbjct: 417 EFRKRFELPILRGRDAD----ASEAERQRGDECLAELLGIVNKFIIRRTNDILSKYLPVK 472
Query: 354 RHSVVILQPDEFQKRLCK---AVEGVKSFVELNYCVSLLSV--------HPSLLP----- 397
VV + FQ L G+++ + L ++ HP LL
Sbjct: 473 YEHVVFCKLAPFQLALYNYFITSPGIQALLRGKGSQPLKAIGILKKLCNHPDLLDLAADL 532
Query: 398 ---QQFF-ESFDVDSAKLARLKLDPEAGIKTRFL---LILLELSTNEKVLVFSQYIEPLT 450
+QF+ E + A+ + P K + L L + TN+K+++ S Y + L
Sbjct: 533 PGCEQFWPEDYVPKEARGRDRDIRPWYSGKMQVLDRMLARIRADTNDKIVLISNYTQTLD 592
Query: 451 LIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINL 510
L R R G L +DG +V KRQ ++ NDP+ + L S+KA G+NL
Sbjct: 593 LFERLCRSR-----GYGCLRLDGAMNVNKRQKLVDKFNDPNGDEFVFLLSSKAGGCGLNL 647
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS 570
+GA+R+VL D WNP ++QA++R +R GQK+ VY I + T+E +RQ+ K S
Sbjct: 648 IGANRLVLFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLS 707
Query: 571 NMVFPSSD 578
+ V S++
Sbjct: 708 SCVVDSAE 715
>gi|17508659|ref|NP_492438.1| Protein RAD-54 [Caenorhabditis elegans]
gi|6580248|emb|CAA22254.2| Protein RAD-54 [Caenorhabditis elegans]
Length = 818
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 148/549 (26%), Positives = 248/549 (45%), Gaps = 91/549 (16%)
Query: 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQ 125
V K + PHQR+G +F+W + G I++ E +GCI++ G GKT + L
Sbjct: 198 VGKILRPHQRDGVKFMWDCVTG-INIPEF---------HGCIMADEMGLGKTLQCISLLW 247
Query: 126 AYMKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
++ P P +I+ P S++ W++E KKW L + N V
Sbjct: 248 TLLRQSPDACPTVSKSIIVCPSSLVKNWDKEIKKW-------------LGTRLNAMPV-- 292
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
D+ KR + L ++ + +L +SY F +L + SG + G+ + DE
Sbjct: 293 -DSGKREQIIACLNSFMADSKMRCAIPVLIISYETF-RLYANILHSGDV----GIVICDE 346
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQE-----------LENTLSLVRQEF 289
GH +N + ++ALS +K RR+++SGTP QN+ E L T S R++F
Sbjct: 347 GHRLKNSENLTYQALSGLKCARRVLISGTPIQNDLLEYFSLVNFVNPGLLGTASEFRKKF 406
Query: 290 GEVL---RTVRKSGREISKA--KHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGT 344
+ R S + K K +IS + +C R L + + K +
Sbjct: 407 ENAILKGRDADASSEDQKKGEEKTKEMISLVEKCIIRRTSALLTKYLPVKYEHIICCKNS 466
Query: 345 VLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSL--LSVHPSLLPQQFF- 401
LQE+L L E Q R+ + +G + L++ L L HP L+ +F
Sbjct: 467 TLQETLYNK------LIECEKQNRIVEKDKGATASA-LSFITHLKKLCNHPYLVYDEFQK 519
Query: 402 --------------ESFDVDSAKLARLKLDPEAGIKTR---FLLILLELSTNEKVLVFSQ 444
ESF+ S DP K + ++L + +T++K ++ S
Sbjct: 520 PDNRFRNKCLSIFPESFNPKS-------FDPSFSGKMKVLDYILAVTRKTTDDKFVLVSN 572
Query: 445 YIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKAC 504
Y + + ME + R G + + +DG +K+R ++ NDP+S L S+KA
Sbjct: 573 YTQTIDQFMELCKLR-----GYDFVRLDGSMSIKQRSKIVDTFNDPASTIFCFLLSSKAG 627
Query: 505 CEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQA 564
G+NL+GA+R+V+ D WNP + QA++R +R GQK++ +Y L+ + ++E +RQ
Sbjct: 628 GCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKMCFIYRLLATGSIEEKMFQRQT 687
Query: 565 RKVWWSNMV 573
K S+ V
Sbjct: 688 HKKALSSCV 696
>gi|398396748|ref|XP_003851832.1| DNA repair protein, SNF2 family [Zymoseptoria tritici IPO323]
gi|339471712|gb|EGP86808.1| DNA repair protein, SNF2 family [Zymoseptoria tritici IPO323]
Length = 809
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 153/549 (27%), Positives = 240/549 (43%), Gaps = 85/549 (15%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ EG +F+++ G ID GCI++ G GKT + +
Sbjct: 215 KVLRPHQVEGVKFMYRCTTGLID----------ANAEGCIMADEMGLGKTLQCITLMWTL 264
Query: 128 MKLHPRC------RPVIIAPRSMLLTWEEEFKKW-GIDIPFYNLNKPELSGKENNGAVAL 180
+K P + VI P S++ W E KW G D +N + GK + +
Sbjct: 265 LKQSPDAGKSTIQKCVIACPSSLVRNWANELIKWLGPDA----INPFAVDGKASKEELT- 319
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLSYRLFEKLVSGDELSGILLDLPG 234
++ SW TG +L +SY V DEL + G
Sbjct: 320 ----------------QQMRSWASATGRAVTRPVLIVSYETLRLYV--DELRTPI----G 357
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVL 293
L + DEGH +N ++ F+AL+R+ +R+ILSGTP QN+ E L+ + G L
Sbjct: 358 LMLCDEGHRLKNGESQTFEALNRLNVSKRVILSGTPIQNDLSEYFALLTFANPGYLGTRL 417
Query: 294 RTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGL 353
+K I + + AS + + +E+LKEL E + F+ +L + LP
Sbjct: 418 EFRKKFEIPILRGRDASGTEA----DQQKGNERLKELLELVNKFIIRRTNDILSKYLPVK 473
Query: 354 RHSVVILQPDEFQKRL----CKAVEGVKSFVELNYCVSLLSV--------HPSLL----- 396
VV FQ L K+ E ++S + L ++ HP LL
Sbjct: 474 YEHVVFCNLAPFQLDLYNYFIKSPE-IQSLLRGKGSQPLKAIGLLKKLCNHPDLLNLPDD 532
Query: 397 ----PQQFFESFDVDSAKLARLKLDPEAGIKTRFL---LILLELSTNEKVLVFSQYIEPL 449
F E F A+ + P K + L L + TN+K+++ S Y + L
Sbjct: 533 LPGCESHFPEDFVPKDARGRDRDVKPWYSGKMQVLDRMLARIRHDTNDKIVLISNYTQTL 592
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509
+ + R+R L +DG V KRQ ++ N+P + + L S+KA G+N
Sbjct: 593 DVFEKLCRNR-----SYGCLRLDGTMAVNKRQKLVDKFNNPDGEEFVFLLSSKAGGCGLN 647
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
L+GA+R+VL D WNP ++QA++R +R GQK+ VY I + T+E +RQ+ K
Sbjct: 648 LIGANRLVLFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSL 707
Query: 570 SNMVFPSSD 578
S+ V S++
Sbjct: 708 SSCVVDSAE 716
>gi|238814383|ref|NP_001154953.1| RAD54-like [Nasonia vitripennis]
Length = 749
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 148/539 (27%), Positives = 244/539 (45%), Gaps = 81/539 (15%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F+++ + G ++E GCI++ G GKT + L +K
Sbjct: 158 PHQREGVKFMYECVTGK-RIEE---------AYGCIMADEMGLGKTLQCITLLWTLLKQG 207
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P +P +I+AP S++ W E KW N KP +D +
Sbjct: 208 PEAKPLIEKAIIVAPSSLVKNWYNEIFKW-----LQNRVKP-----------LAIDGGSK 251
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDEGHT 243
L ++K Y + T IL +SY RL ++ D++ GL + DEGH
Sbjct: 252 SEIDAKLTGFMKTYGRRCATPILIISYETFRLHAHVLHQDDV--------GLVLCDEGHR 303
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQE-----------LENTLSLVRQEFGEV 292
+N + ++AL +K +RR++LSGTP QN+ E L T + R++F
Sbjct: 304 LKNSENQTYQALMGLKAKRRVLLSGTPIQNDLLEYFSLIHFVNSGLLGTAAEFRKKFENP 363
Query: 293 LRTVRKSG-----REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQ 347
+ + +G R+I++ + L++ + +C R L + V K T LQ
Sbjct: 364 ILRGQDAGATDKERQIAQERLTELVTVVNKCLIRRTSALLSKYLPLKHELVVCIKMTPLQ 423
Query: 348 ESLPGLRHSVVILQPDEFQKRL---CKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESF 404
L ++ D +K + A +G S + + L HP L+ ++ E+
Sbjct: 424 TQL-----YKNFIKSDSIKKSMQDDGTAKKGSLSALSAITLLKKLCNHPDLVYEKIQENS 478
Query: 405 D--VDSAKL-----ARLKLDPEAGIKTRFLLILLEL---STNEKVLVFSQYIEPLTLIME 454
D +AKL + ++ PE K L LL +T +K+++ S Y + L L
Sbjct: 479 DGFEGAAKLLPANYSTKEVMPELSGKLMVLDCLLAFIKSTTTDKIVLVSNYTQTLDLF-- 536
Query: 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGAS 514
R + + + +DG +KKR ++ N+P S I + S+KA G+NLVGA+
Sbjct: 537 ---ERLCAKRKYKYVRLDGTMSIKKRAKVVDNFNNPDSGDFIFMLSSKAGGCGLNLVGAN 593
Query: 515 RVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
R+V+ D WNP + QA++R +R GQK+ VY + + T+E +RQA K S+ V
Sbjct: 594 RLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLCTGTIEEKIFQRQAHKKALSSTV 652
>gi|426215442|ref|XP_004001981.1| PREDICTED: DNA repair and recombination protein RAD54-like [Ovis
aries]
Length = 749
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 142/540 (26%), Positives = 239/540 (44%), Gaps = 79/540 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG EF+WK + G G +GCI++ G GKT + +
Sbjct: 152 KVLRPHQREGVEFLWKCVTG----------RRIPGSHGCIMADEMGLGKTLQCITLMWTL 201
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 202 LRQSPDCKPEIDKAVVVSPSSLVRNWYNEVGKW-------------LGGRIQPLAI---D 245
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 246 GGSKDEIDQKLEGFMNQRGARVPSPILIISYETFRLHVGVLQKGSV-----GLVICDEGH 300
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T +E
Sbjct: 301 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGT----AQE 353
Query: 303 ISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ A+ D +E+L+EL + + +L + LP VV
Sbjct: 354 FKKHFELPILKGRDAAASEEDRRVGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVV 413
Query: 359 ILQPDEFQ----KRLCKAVEGVKSFVE---------LNYCVSLLSVHPSLLPQQFFE--- 402
+ Q KR + + + E + L HP+L+ + E
Sbjct: 414 CCRLTPLQIELYKRFLRQAKPAEELREGKMSVSSLSSITSLKKLCNHPALIYDKCVEEED 473
Query: 403 ----SFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQ 455
+ D+ L+P+ K L +L ++ +++KV++ S Y + L L +
Sbjct: 474 GFEGTLDIFPPGYNSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKL 533
Query: 456 LRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
R R LY +DG +KKR + N+PSS + + S+KA G+NL+GA
Sbjct: 534 CRAR-------RYLYVRLDGTMSIKKRAKVVERFNNPSSPDFVFMLSSKAGGCGLNLIGA 586
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 587 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 646
>gi|189238349|ref|XP_967988.2| PREDICTED: similar to steroid receptor-interacting snf2 domain
protein [Tribolium castaneum]
Length = 713
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 145/539 (26%), Positives = 244/539 (45%), Gaps = 75/539 (13%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F++ + G ++ NS GCI++ G GKT + L ++
Sbjct: 102 PHQREGVKFMYDCVTGV----QIPNSF------GCIMADEMGLGKTLQCITLLWTLVRQG 151
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P +I+ P S++ W E KW L G+ + +MD
Sbjct: 152 PECKPTIDKGIIVCPSSLVRNWSNEIDKW-------------LKGRL---SCLIMDGGPD 195
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRN 246
R K L ++++ + + +L +SY F S I GL + DEGH +N
Sbjct: 196 ARKK--LTQFMQGFG-RTAIPVLIISYETFRMHAEILHKSEI-----GLVLCDEGHRLKN 247
Query: 247 DDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKSGREISK 305
+ +KAL +K RRR++LSGTP QN+ E + + V + G +K I +
Sbjct: 248 CENQTYKALMGLKARRRVLLSGTPIQNDLLEYFSLVHFVNEGLLGSAQEFKKKFENPILR 307
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
+ ++ S + E+LKEL + + + +L + LP +VI Q
Sbjct: 308 GQDSTATDS----ERQKAVERLKELSDLVNRCLIRRTSNLLTKYLPVKFEMIVICQLTPL 363
Query: 366 QKRLCKAV-------EGVKSFVELNYCVSLLSV---------HPSLLPQQFFES---FDV 406
QK++ +GV + VE+ +S L+ HP L+ + E F+
Sbjct: 364 QKQIYLNYINSEGLRKGVLNDVEVKASLSALASITTLKKLCNHPDLIMDKILEGGEGFEK 423
Query: 407 DSAKLARLKLDPEAGIKTRFLLILLEL-------STNEKVLVFSQYIEPLTLIMEQLRHR 459
L D + + L+LL+ + N+KV++ S Y + L L + R R
Sbjct: 424 SRHLLPPNYNDKDVMPQLSGKLMLLDCFLANLKNNYNDKVVLVSNYTQTLDLFEKLCRKR 483
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
G + +DG +KKR + NDP S I + S+KA G+NL+GA+R+++
Sbjct: 484 -----GYRYVRLDGTMSIKKRAKVVANFNDPESGEFIFMLSSKAGGCGLNLIGANRLIMF 538
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
D WNP + QA++R +R GQ++ ++Y + + T+E +RQA K S+ V +++
Sbjct: 539 DPDWNPANDDQAMARVWRDGQQKPCYIYRFLAAGTIEEKIFQRQAHKKALSSTVVDNNE 597
>gi|366987377|ref|XP_003673455.1| hypothetical protein NCAS_0A05110 [Naumovozyma castellii CBS 4309]
gi|342299318|emb|CCC67069.1| hypothetical protein NCAS_0A05110 [Naumovozyma castellii CBS 4309]
Length = 875
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 143/565 (25%), Positives = 254/565 (44%), Gaps = 102/565 (18%)
Query: 68 KKMFPHQREGFEFIWKNIAG----------GIDLDELKNSTSTGGGNGCIISHAPGTGKT 117
K + PHQ EG +F+++ + G ++ +K + G GCI++ G GKT
Sbjct: 260 KILRPHQVEGVKFLYRCVTGLVMKDFLDAEAVNTGIVKTEQNNRGAYGCIMADEMGLGKT 319
Query: 118 GLTLVFLQAYMKLHPRCR-----PVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGK 172
+ + ++ P+ + +I+ P S++ W E KW + L+ + GK
Sbjct: 320 LQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNWANELVKW---LGPGTLSPLAVDGK 376
Query: 173 ENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLSYRLFEKLVSGDELS 226
+++ A G V ++SW TG +L +SY + V D+L
Sbjct: 377 KSSLA--------SGNSTVA----EAVHSWAQATGRNIVKPVLIISYETLRRNV--DQLR 422
Query: 227 GILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL-- 284
+ GL + DEGH +N D+ F AL I RR+ILSGTP QN+ E L+
Sbjct: 423 NCDV---GLMLADEGHRLKNGDSLTFTALDSINCPRRVILSGTPIQNDLSEYFALLNFSN 479
Query: 285 -----VRQEFGE-----VLRT--VRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
R EF + +LR+ + EI+K +E+L++L
Sbjct: 480 PGLLGTRSEFRKNFELPILRSRDADSTDEEITKG-----------------EEQLQKLST 522
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQK-------------RLCKAVEGVKSF 379
++ F+ +L + LP V+ + FQK ++ K V G +
Sbjct: 523 IVSKFIIRRTNDILSKYLPCKYEHVIFVNLKPFQKDVYHRLLKSRDVNKMVKGVGGTQPL 582
Query: 380 VELNYCVSLLSVHPSL--LPQQFFESFDVDSAKLARLKLDPEAGIKTRF---------LL 428
+ L + HP+L L ++ + D++ ++ ++ +F L
Sbjct: 583 KAIGVLKKLCN-HPNLINLDEEIDDFDDLEIPDEYNMQGSKSRDVQPQFSGKFAILERFL 641
Query: 429 ILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN 488
++ +++K+++ S Y + L LI + R++ + +DG + KRQ ++ N
Sbjct: 642 HKIKTESDDKIVLISNYTQTLDLIEKMCRNKH-----YSSVRLDGTMTINKRQKLVDRFN 696
Query: 489 DPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYH 548
DP Q I L S+KA GINL+GA+R++L+D WNP ++QA++R +R GQK+ +Y
Sbjct: 697 DPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQKKDCFIYR 756
Query: 549 LITSETLEWDKLRRQARKVWWSNMV 573
I++ ++E +RQ+ K+ S+ V
Sbjct: 757 FISTGSIEEKIYQRQSMKMSLSSCV 781
>gi|308499699|ref|XP_003112035.1| CRE-RAD-54 protein [Caenorhabditis remanei]
gi|308268516|gb|EFP12469.1| CRE-RAD-54 protein [Caenorhabditis remanei]
Length = 1096
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 144/542 (26%), Positives = 243/542 (44%), Gaps = 77/542 (14%)
Query: 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQ 125
V K + PHQR+G +F+W + G+++ E +GCI++ G GKT + L
Sbjct: 473 VGKILRPHQRDGVKFMW-DCVTGVNIPEY---------HGCIMADEMGLGKTLQCISLLW 522
Query: 126 AYMKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
++ P P +I+ P S++ W++E KKW L + N V
Sbjct: 523 TLLRQSPDACPTVSKSIIVCPSSLVKNWDKEIKKW-------------LGTRLNAMPV-- 567
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
D+ KR L ++ + +L +SY F +L + SG + G+ + DE
Sbjct: 568 -DSGKRELIIASLNSFMADSKMRCAIPVLIISYETF-RLYANILHSGDV----GIVICDE 621
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQE-----------LENTLSLVRQEF 289
GH +N D ++ALS +K RR+++SGTP QN+ E L T S R++F
Sbjct: 622 GHRLKNSDNLTYQALSGLKCARRVLISGTPIQNDLLEYFSLVNFVNPGLLGTASEFRKKF 681
Query: 290 GEVL---RTVRKSGREISKA--KHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGT 344
+ R S + K K ++S + +C R L + + K +
Sbjct: 682 ENAILKGRDADASAEDQKKGEEKTKEMVSLVEKCIIRRTSALLTKYLPVKYEHIICCKNS 741
Query: 345 VLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSL--LSVHPSLLPQQF-- 400
LQE+L L E Q R+ + +G + L++ L L HP L+ ++F
Sbjct: 742 TLQETLYNK------LIECEKQNRIVEKDKGATASA-LSFITHLKKLCNHPYLVYEEFQK 794
Query: 401 ------FESFDVDSAKLARLKLDPEAGIKTR---FLLILLELSTNEKVLVFSQYIEPLTL 451
+ V DP K + ++L + +T++K ++ S Y + +
Sbjct: 795 PDNRFRNKCLPVFPEAFNPKSFDPSFSGKMKVLDYILAVTRKTTDDKFVLVSNYTQTIDQ 854
Query: 452 IMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLV 511
M + R G + + +DG +K+R ++ NDPSS L S+KA G+NL+
Sbjct: 855 FMALCKLR-----GYDFVRLDGSMSIKQRSKIVDTFNDPSSTIFCFLLSSKAGGCGLNLI 909
Query: 512 GASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSN 571
GA+R+V+ D WNP + QA++R +R GQK+ +Y L+ + ++E +RQ K S+
Sbjct: 910 GANRLVMFDPDWNPANDDQAMARVWRDGQKKTCFIYRLLATGSIEEKMFQRQTHKKALSS 969
Query: 572 MV 573
V
Sbjct: 970 CV 971
>gi|270009357|gb|EFA05805.1| hypothetical protein TcasGA2_TC030720 [Tribolium castaneum]
Length = 729
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 145/539 (26%), Positives = 244/539 (45%), Gaps = 75/539 (13%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F++ + G ++ NS GCI++ G GKT + L ++
Sbjct: 118 PHQREGVKFMYDCVTGV----QIPNSF------GCIMADEMGLGKTLQCITLLWTLVRQG 167
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P +I+ P S++ W E KW L G+ + +MD
Sbjct: 168 PECKPTIDKGIIVCPSSLVRNWSNEIDKW-------------LKGRL---SCLIMDGGPD 211
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRN 246
R K L ++++ + + +L +SY F S I GL + DEGH +N
Sbjct: 212 ARKK--LTQFMQGFG-RTAIPVLIISYETFRMHAEILHKSEI-----GLVLCDEGHRLKN 263
Query: 247 DDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKSGREISK 305
+ +KAL +K RRR++LSGTP QN+ E + + V + G +K I +
Sbjct: 264 CENQTYKALMGLKARRRVLLSGTPIQNDLLEYFSLVHFVNEGLLGSAQEFKKKFENPILR 323
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
+ ++ S + E+LKEL + + + +L + LP +VI Q
Sbjct: 324 GQDSTATDS----ERQKAVERLKELSDLVNRCLIRRTSNLLTKYLPVKFEMIVICQLTPL 379
Query: 366 QKRLCKAV-------EGVKSFVELNYCVSLLSV---------HPSLLPQQFFES---FDV 406
QK++ +GV + VE+ +S L+ HP L+ + E F+
Sbjct: 380 QKQIYLNYINSEGLRKGVLNDVEVKASLSALASITTLKKLCNHPDLIMDKILEGGEGFEK 439
Query: 407 DSAKLARLKLDPEAGIKTRFLLILLEL-------STNEKVLVFSQYIEPLTLIMEQLRHR 459
L D + + L+LL+ + N+KV++ S Y + L L + R R
Sbjct: 440 SRHLLPPNYNDKDVMPQLSGKLMLLDCFLANLKNNYNDKVVLVSNYTQTLDLFEKLCRKR 499
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
G + +DG +KKR + NDP S I + S+KA G+NL+GA+R+++
Sbjct: 500 -----GYRYVRLDGTMSIKKRAKVVANFNDPESGEFIFMLSSKAGGCGLNLIGANRLIMF 554
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
D WNP + QA++R +R GQ++ ++Y + + T+E +RQA K S+ V +++
Sbjct: 555 DPDWNPANDDQAMARVWRDGQQKPCYIYRFLAAGTIEEKIFQRQAHKKALSSTVVDNNE 613
>gi|343429051|emb|CBQ72625.1| probable RAD54-DNA-dependent ATPase of the Snf2p family
[Sporisorium reilianum SRZ2]
Length = 871
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 149/536 (27%), Positives = 237/536 (44%), Gaps = 72/536 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ EG +F+++ G + ++N+ GCI++ G GKT + +
Sbjct: 285 KVLRPHQVEGVKFLYRCTTGLV----VENAF------GCIMADEMGLGKTLQCITLMWTL 334
Query: 128 MKLHP--------RCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVA 179
+K P +C +I+ P S++ W E KW G G +A
Sbjct: 335 LKQSPIPKKTTIDKC--IIVCPSSLVRNWANELVKW--------------LGAAAPGNLA 378
Query: 180 LMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFD 239
L + R+ + ++ +SY L +EL + GL + D
Sbjct: 379 LDGKLSKDEMIEATRRWCNASGRAITQPVMIVSYETLRNL--QEELGNTEV---GLLLCD 433
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGEVLRTVRK 298
EGH +N D+ F+AL++IK RRR+ILSGTP QN+ E L+ E G + +
Sbjct: 434 EGHRLKNADSLTFQALTQIKVRRRVILSGTPIQNDLSEYFALLNFANPELLGSRVEFRKN 493
Query: 299 SGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
I K + A + AN EKL +L ++ F+ +L + LP VV
Sbjct: 494 FEIAILKGRDAEATDKQQQEAN----EKLSQLSALVSRFIIRRTNDLLSKYLPVKYEHVV 549
Query: 359 ILQPDEFQ-------------KRLCKAVEGVKSFVELNYCVSLLSVHPSL--LPQQF--- 400
+ FQ K+L + G + + L + HP L LP
Sbjct: 550 FCKMSPFQLDLYRLFIRSPEIKKLLRGT-GSQPLKAIGILKKLCN-HPDLLDLPSDLEGS 607
Query: 401 FESFDVDSAKLARLKLDPEAGIKTRFLLILLEL---STNEKVLVFSQYIEPLTLIMEQLR 457
E F R +++PE K L LE +TN+K+++ S Y + L + E++
Sbjct: 608 EEYFPEGYTPRDRRQVNPELSGKMMVLQRFLETIRATTNDKIVLISNYTQTLD-VFERMC 666
Query: 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
W + +DG + KRQ ++ NDP + I L S+KA G+NL+GA+R+V
Sbjct: 667 RANRW----GMFRLDGTMTINKRQKLVDRFNDPEGKEFIFLLSSKAGGCGLNLIGANRLV 722
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
L D WNP ++QA++R +R GQK+ VY I + ++E L+RQ+ K S+ V
Sbjct: 723 LFDPDWNPASDQQALARVWRDGQKKSCFVYRFIATGSIEEKILQRQSHKQSLSSCV 778
>gi|403166558|ref|XP_003889973.1| DNA repair and recombination protein RAD54 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|375166302|gb|EHS63112.1| DNA repair and recombination protein RAD54 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 1049
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 154/556 (27%), Positives = 246/556 (44%), Gaps = 97/556 (17%)
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
L PR + K + PHQ EG +F+++ G ++ G GCI++ G GKT
Sbjct: 455 LDPR-LSKTLRPHQVEGVKFLYRCATGMVE----------QGAKGCIMADEMGLGKTLQC 503
Query: 121 LVFLQAYMKLHPRC------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKEN 174
+ L +K P + ++ P S++ W EF KW + +N + GK+
Sbjct: 504 ITLLWTLLKQSPIAGKPSIEKAIVACPSSLVKNWANEFDKW---LGPGAINPLAVDGKQT 560
Query: 175 NGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEK--LVSGDELSGILLD- 231
K L+ V+ W TG R+ + +VS + L G L++
Sbjct: 561 ---------------KANLLTSVR--QWVSATG-----RRVPQPVMIVSYETLRGTLVEE 598
Query: 232 ---LP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
P GL + DEGH +N D + AL+ I RR+IL+GTP QN+ E L+
Sbjct: 599 LGRTPVGLLLCDEGHRLKNADNQTYAALNGINCERRVILTGTPIQNDLSEYFALLNFANP 658
Query: 288 EFGEVLRTVRKS-------GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNV 340
+ RKS GR+ ++ ++ + KLKEL K+ F+
Sbjct: 659 NYLGDRAQFRKSYELPILRGRDSDSSESEVALA----------EAKLKELTTKVQKFIIR 708
Query: 341 HKGTVLQESLPGLRHSVVILQPDEFQ-------------KRLCKAVEGVKSFVELNYCVS 387
+L + LP VV P FQ ++L + V G + L
Sbjct: 709 RTNDLLSKYLPVKYEHVVFCAPSAFQLDLYRHFIDSPDLQKLLRGV-GCQPLKMLGILRK 767
Query: 388 LLSVHPSLLPQQ---------FFESF-DVDSAKLARLKLDPEAGIKTRFLLILLELSTNE 437
L + HP LL Q F + + D AR +L + + RFL ++ T +
Sbjct: 768 LCN-HPDLLDLQQDIPGSEKYFPDGYRSKDPRAPARPELSGKMTVLERFLH-KIKTETTD 825
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
K+++ S + + L +ME++ W L +DG + KRQ ++ NDP + I
Sbjct: 826 KIVLISNFTQTLD-VMEKMCRERRWGN----LRLDGTMQITKRQKLVDRFNDPEGKEFIF 880
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L S+KA GINL+GA+R++L D WNP ++QA++R +R GQK+ VY I + ++E
Sbjct: 881 LLSSKAGGCGINLIGANRLILFDPDWNPASDQQALARVWRDGQKKNCFVYRFILTGSVEE 940
Query: 558 DKLRRQARKVWWSNMV 573
+RQ++K+ S V
Sbjct: 941 KVFQRQSQKMKLSASV 956
>gi|358054278|dbj|GAA99204.1| hypothetical protein E5Q_05897 [Mixia osmundae IAM 14324]
Length = 911
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 156/554 (28%), Positives = 240/554 (43%), Gaps = 94/554 (16%)
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
L PR + K + PHQ EG +F++K G I + G GCI++ G GKT
Sbjct: 318 LDPR-LGKVLRPHQVEGVKFLYKAATGMI----------SEGAFGCIMADEMGLGKTLQC 366
Query: 121 LVFLQAYMKLHPRC------RPVIIAPRSMLLTWEEEFKKW---GIDIPFY---NLNKPE 168
+ L +K P+ + +++ P S++ W EF KW G P ++ KP+
Sbjct: 367 ITLLFTLLKQSPKAGKGTIEKAIVVCPASLVRNWANEFVKWLGPGTINPLAIDGSMPKPD 426
Query: 169 LSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGI 228
L L ++V + + ++ +SY L + EL
Sbjct: 427 LMA--------------------ALRQWVSAHGRAICQPVIIVSYETLRSLTA--ELGNA 464
Query: 229 LLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE 288
+ GL + DE H +N + L +I +RR++L+GTP QN+ E + L+
Sbjct: 465 PI---GLILCDEAHRLKNATNLTYTELDKINVQRRVLLTGTPVQNDLTEYFSLLNFA--- 518
Query: 289 FGEVLRTVRKSGREISKAKHASLISSIGRCANHRD------DEKLKELKEKIAPFVNVHK 342
K G K+ L GR + D EKLKEL + FV
Sbjct: 519 ------IPGKLGARADFKKNYELAIVRGRMSEATDKERERCQEKLKELTSLVNQFVIRRT 572
Query: 343 GTVLQESLPGLRHSVVI--LQPDEFQ--KRLCKAVE------GVKSFVELNYCVSLLSVH 392
+L + LP VV L P + Q ++L K E G + + L + H
Sbjct: 573 NDLLTKYLPVKYEHVVFCNLSPLQLQLYQKLIKRPEEKDAKGGTSALGAIQRAQKLCN-H 631
Query: 393 PSLLPQQFFESFDVDSAKLARLKLDP---------EAGIKTRFLLILLE---LSTNEKVL 440
P LL F ++FD D DP E KT L LE TN+K++
Sbjct: 632 PQLLDAYFRDNFD-DFKNDMPDGFDPFDRRRSVVSEYSGKTLVLDRFLEKMRAETNDKIV 690
Query: 441 VFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
+ S Y E L + + LR R + + ++G +KKRQ ++ N+P + + L
Sbjct: 691 LISNYTETLDVFEKMLRDRKYGY------FRLEGSTSIKKRQKLVDEFNNPEGKEFVFLL 744
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
S+KA GINL+GA+R++L D WNP ++QA++R +R GQK+ VY I + T+E
Sbjct: 745 SSKAGGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKI 804
Query: 560 LRRQARKVWWSNMV 573
+RQA K S+ V
Sbjct: 805 FQRQAHKQALSSCV 818
>gi|403417896|emb|CCM04596.1| predicted protein [Fibroporia radiculosa]
Length = 815
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 151/547 (27%), Positives = 236/547 (43%), Gaps = 86/547 (15%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ EG +F++K G I ++ GCI++ G GKT + L
Sbjct: 221 KVLRPHQIEGVKFLYKCTTGMIVENQY----------GCIMADEMGLGKTLQCIALLWTL 270
Query: 128 MKLHPRC------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
+K P + +I P S++ W E KW GK+ A+A+
Sbjct: 271 VKQSPHAGKPTIEKCIIACPSSLVKNWANELVKW--------------LGKDTVSALAID 316
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
+ + R+V + ++ +SY L + I GL + DEG
Sbjct: 317 GKGGKAEMLARVARWVAAGGRNVSQPVMIVSYETLRSLTAHLANCSI-----GLLLCDEG 371
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301
H +N ++ F+AL+ + RRR+ILSGTP QN+ E + L+ F S
Sbjct: 372 HRLKNSESLTFQALNGLNVRRRVILSGTPIQNDLSEYFSLLNFANPNF-------LGSKN 424
Query: 302 EISKAKHASLISSIGRCANHRD------DEKLKELKEKIAPFVNVHKGTVLQESLPGLRH 355
+ K ++I GR A+ D ++KLKEL +A F+ +L + LP
Sbjct: 425 DFRKNFENAIIR--GRDADASDQTKAECEKKLKELGGLVAKFIIRRTNDLLSKYLPVKYE 482
Query: 356 SVVILQPDEFQKRLCK----------AVEGVKS--FVELNYCVSLLSVHPSLL------- 396
VV FQ L + + G S +N L + HP LL
Sbjct: 483 QVVFCGLSPFQLSLYRLFISSPEIQALLRGADSQPLKAINILKKLCN-HPELLDLPNDLR 541
Query: 397 ------PQQFF----ESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYI 446
P+ F S D + R + + RFL + TN+K+++ S Y
Sbjct: 542 GSEKLQPEDFSGAGGSSRDKGRNQTVRCDYSGKFMVLERFLH-RIHTETNDKIVLISNYT 600
Query: 447 EPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCE 506
+ L L + LR + + G +DG + KRQ ++ NDP+ + + L S+KA
Sbjct: 601 QTLDLFEKLLRSK---KYG--YFRLDGSMTINKRQKLVDQFNDPNGKEFVFLLSSKAGGC 655
Query: 507 GINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
GINL+GA+R++L D WNP ++QA++R +R GQK+ VY I + T+E +RQA K
Sbjct: 656 GINLIGANRLILFDPDWNPAADQQALARVWRDGQKKECFVYRFICTGTIEEKIFQRQASK 715
Query: 567 VWWSNMV 573
S+ V
Sbjct: 716 QALSSAV 722
>gi|327271091|ref|XP_003220321.1| PREDICTED: DNA repair and recombination protein RAD54-like [Anolis
carolinensis]
Length = 906
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 149/543 (27%), Positives = 243/543 (44%), Gaps = 93/543 (17%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F+W+ + G L G +GCI++ G GKT + + ++
Sbjct: 317 PHQREGVKFLWECVTGRRIL----------GSHGCIMADEMGLGKTLQCITLMWTLLRQS 366
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P ++++P S++ W E KW L G+ A+
Sbjct: 367 PDCKPEIDKAIVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAIDGGSKEDI 413
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLF----EKLVSGDELSGILLDLPGLFVFDEGH 242
R G + L ++ + IL +SY F E L G+ GL + DEGH
Sbjct: 414 DRKLAGFMNQRGL---RVPSPILIISYETFRLHAEVLQKGNV---------GLVICDEGH 461
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR-------QEFGEVLRT 295
+N D ++AL ++ T RR+++SGTP QN+ E + + V QEF +
Sbjct: 462 RLKNSDNQTYQALYKLNTPRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKHFEI 521
Query: 296 VRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRH 355
GR+ S GR H+ +E+LKEL + + +L + LP
Sbjct: 522 PILKGRDADA-------SEAGR---HKGEERLKELISIVNRCLIRRTSDILSKYLPVKIE 571
Query: 356 SVVI--LQP--DEFQKRLCKAVEGVKSFVE---------LNYCVSLLSVHPSLLPQQFFE 402
VV L P E K+ K + + E + L HP+L+ + E
Sbjct: 572 QVVCCRLTPLQSELYKQFLKQAKPAEDLKEGKISVSSLSSITSLKKLCNHPALIHDKCVE 631
Query: 403 SFD--VDSAKL-----ARLKLDPEAGIKT---RFLLILLELSTNEKVLVFSQYIEPLTLI 452
+ V + KL + L+P+ K ++L + + ++N+KV++ S Y + L L
Sbjct: 632 EEEGFVGALKLFPPGYSTKSLEPQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLF 691
Query: 453 MEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINL 510
+ R+R LY +DG +KKR + N SS I + S+KA G+NL
Sbjct: 692 EKLCRNR-------RYLYVRLDGTMSIKKRAKVVEHFNSVSSPEFIFMLSSKAGGCGLNL 744
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS 570
+GA+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ K S
Sbjct: 745 IGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALS 804
Query: 571 NMV 573
+ V
Sbjct: 805 SCV 807
>gi|331227507|ref|XP_003326422.1| ISWI chromatin-remodeling complex ATPase ISW2 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 939
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 154/556 (27%), Positives = 246/556 (44%), Gaps = 97/556 (17%)
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
L PR + K + PHQ EG +F+++ G ++ G GCI++ G GKT
Sbjct: 345 LDPR-LSKTLRPHQVEGVKFLYRCATGMVE----------QGAKGCIMADEMGLGKTLQC 393
Query: 121 LVFLQAYMKLHPRC------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKEN 174
+ L +K P + ++ P S++ W EF KW + +N + GK+
Sbjct: 394 ITLLWTLLKQSPIAGKPSIEKAIVACPSSLVKNWANEFDKW---LGPGAINPLAVDGKQT 450
Query: 175 NGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEK--LVSGDELSGILLD- 231
K L+ V+ W TG R+ + +VS + L G L++
Sbjct: 451 ---------------KANLLTSVR--QWVSATG-----RRVPQPVMIVSYETLRGTLVEE 488
Query: 232 ---LP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
P GL + DEGH +N D + AL+ I RR+IL+GTP QN+ E L+
Sbjct: 489 LGRTPVGLLLCDEGHRLKNADNQTYAALNGINCERRVILTGTPIQNDLSEYFALLNFANP 548
Query: 288 EFGEVLRTVRKS-------GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNV 340
+ RKS GR+ ++ ++ + KLKEL K+ F+
Sbjct: 549 NYLGDRAQFRKSYELPILRGRDSDSSESEVALA----------EAKLKELTTKVQKFIIR 598
Query: 341 HKGTVLQESLPGLRHSVVILQPDEFQ-------------KRLCKAVEGVKSFVELNYCVS 387
+L + LP VV P FQ ++L + V G + L
Sbjct: 599 RTNDLLSKYLPVKYEHVVFCAPSAFQLDLYRHFIDSPDLQKLLRGV-GCQPLKMLGILRK 657
Query: 388 LLSVHPSLLPQQ---------FFESF-DVDSAKLARLKLDPEAGIKTRFLLILLELSTNE 437
L + HP LL Q F + + D AR +L + + RFL ++ T +
Sbjct: 658 LCN-HPDLLDLQQDIPGSEKYFPDGYRSKDPRAPARPELSGKMTVLERFLH-KIKTETTD 715
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
K+++ S + + L +ME++ W L +DG + KRQ ++ NDP + I
Sbjct: 716 KIVLISNFTQTLD-VMEKMCRERRWGN----LRLDGTMQITKRQKLVDRFNDPEGKEFIF 770
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L S+KA GINL+GA+R++L D WNP ++QA++R +R GQK+ VY I + ++E
Sbjct: 771 LLSSKAGGCGINLIGANRLILFDPDWNPASDQQALARVWRDGQKKNCFVYRFILTGSVEE 830
Query: 558 DKLRRQARKVWWSNMV 573
+RQ++K+ S V
Sbjct: 831 KVFQRQSQKMKLSASV 846
>gi|401841469|gb|EJT43853.1| RAD54-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 898
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 152/581 (26%), Positives = 254/581 (43%), Gaps = 111/581 (19%)
Query: 63 PRDVRKKMFPHQREGFEFIWKNIAGGI--------------------DLDELKNSTSTGG 102
PR + K + PHQ EG F+++ + G + D L S T G
Sbjct: 265 PR-LAKILRPHQVEGVRFLYRCVTGLVMKDYLEAEAFNSSNEEPLKSDEKALSQSQKTEG 323
Query: 103 GN----GCIISHAPGTGKTGLTLVFLQAYMKLHPRCR-----PVIIAPRSMLLTWEEEFK 153
N GCI++ G GKT + + ++ P+ + +I+ P S++ W E
Sbjct: 324 DNRGAYGCIMADEMGLGKTLQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNWANELV 383
Query: 154 KWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGI----L 209
KW L L+ +G + M G G + + V ++ G I L
Sbjct: 384 KW--------LGPNTLTPLAVDGKKSSM-----GGGNTTVSQAVHAWAQAQGRNIVKPVL 430
Query: 210 GLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGT 269
+SY + V D+L + GL + DEGH +N D+ F AL I RR+ILSGT
Sbjct: 431 IISYETLRRNV--DQLKTCDI---GLMLADEGHRLKNGDSLTFTALDSISCPRRVILSGT 485
Query: 270 PFQNNFQE-----------LENTLSLVRQEFGEVL---RTVRKSGREISKAKHASLISSI 315
P QN+ E L T + R+ F + + R + +EISK+
Sbjct: 486 PIQNDLSEYFALLSFSNPGLLGTRAQFRKNFEKPILRGRDADATDKEISKS--------- 536
Query: 316 GRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI--LQP--DEFQKRLCK 371
+E+L++L ++ F+ +L + LP V+ L+P ++ +L K
Sbjct: 537 --------EEQLQKLSTIVSKFIIRRTNDILSKYLPCKYEHVIFVNLKPLQNDLYNKLIK 588
Query: 372 AVEGVKSFVELNYCVSL--------LSVHPSLL--PQQFFESFDVDSAKLARLKLDPEAG 421
+ E K + L L HP+LL +F + D+D +
Sbjct: 589 SREVKKVVKGVGGSQPLRAIGILKKLCTHPNLLNFEDEFDDENDLDLPDDYSMPASKSRD 648
Query: 422 IKTRF---------LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMD 472
++T++ L + +++K+++ S Y + L LI + R++ +D
Sbjct: 649 VQTKYSAKFSILERFLHKIRTESDDKIVLISNYTQTLDLIEKMCRYKH-----YSAARLD 703
Query: 473 GKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAI 532
G + KRQ ++ NDP Q I L S+KA GINL+GA+R++L+D WNP ++QA+
Sbjct: 704 GTMSINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQAL 763
Query: 533 SRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R +R GQK+ +Y I++ T+E +RQ+ K+ S+ V
Sbjct: 764 ARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCV 804
>gi|301768186|ref|XP_002919520.1| PREDICTED: DNA repair and recombination protein RAD54-like
[Ailuropoda melanoleuca]
Length = 838
Score = 163 bits (412), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 144/540 (26%), Positives = 241/540 (44%), Gaps = 79/540 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W+ + S G +GCI++ G GKT + +
Sbjct: 242 KVLRPHQREGVKFLWECV----------TSRRVPGSHGCIMADEMGLGKTLQCITLMWTL 291
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P CRP V+++P S++ W E KW L G+ A+ D
Sbjct: 292 LRQSPECRPEIDKAVVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 335
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 336 GGSKDEIDQKLEGFMNQRGARVPSPILIISYETFRLHVGVLQKGSV-----GLVICDEGH 390
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T E
Sbjct: 391 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGLLGT----AHE 443
Query: 303 ISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ A+ D +E+L+EL + + +L + LP VV
Sbjct: 444 FKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVV 503
Query: 359 I--LQP--DEFQKRLCKAVEGVKSFVELNYCVSLLSV---------HPSLLPQQFFE--- 402
L P E KR + + + E VS LS HP+L+ + E
Sbjct: 504 CCRLTPLQTELYKRFLRQAKPAEELREGKMSVSSLSSITLLKKLCNHPALIYDKCVEEED 563
Query: 403 ----SFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQ 455
+ ++ + L+P+ K L +L ++ +++KV++ S Y + L L +
Sbjct: 564 GFEGALEIFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKL 623
Query: 456 LRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
R R LY +DG +KKR + N+P S + + S+KA G+NL+GA
Sbjct: 624 CRAR-------RYLYVRLDGTMSIKKRAKVVERFNNPLSPDFVFMLSSKAGGCGLNLIGA 676
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 677 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 736
>gi|344287342|ref|XP_003415412.1| PREDICTED: DNA repair and recombination protein RAD54-like
[Loxodonta africana]
Length = 794
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 141/536 (26%), Positives = 235/536 (43%), Gaps = 71/536 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W E S G GCI++ G GKT + +
Sbjct: 198 KVLRPHQREGVKFLW----------ECVTSRRIPGSYGCIMADEMGLGKTLQCITLMWTL 247
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 248 LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 291
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L R++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 292 GGSKDEIDQKLERFMNQRGARVPSPILIISYETFRLHVGVLQKGSV-----GLVICDEGH 346
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T + +
Sbjct: 347 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGTAHEFKKH 403
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI--L 360
++ H +E+L+EL + + +L + LP VV L
Sbjct: 404 FELPILKGRDAAASEADRHLGEERLRELISIVNRCLIRRTSDILSKYLPVKIEQVVCCRL 463
Query: 361 QP--DEFQKRLCKAVEGVKSFVELNYC---------VSLLSVHPSLLPQQFFE------- 402
P E KR + + + E + L HP+L+ + E
Sbjct: 464 TPLQMELYKRFLRQAKPAEELCEAKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFEG 523
Query: 403 SFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQLRHR 459
+ D+ + L+P+ K L +L ++ +N+KV++ S Y + L L + R R
Sbjct: 524 ALDIFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSNDKVVLVSNYTQTLDLFEKLCRAR 583
Query: 460 FNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
LY +DG +KKR + N SS + + S+KA G+NL+GA+R+V
Sbjct: 584 -------RYLYVRLDGTMSIKKRAKVVERFNSLSSPDFVFMLSSKAGGCGLNLIGANRLV 636
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 637 MFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 692
>gi|345780848|ref|XP_532592.3| PREDICTED: DNA repair and recombination protein RAD54-like [Canis
lupus familiaris]
Length = 747
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 145/540 (26%), Positives = 240/540 (44%), Gaps = 79/540 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W E S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVKFLW----------ECVTSRRIPGSHGCIMADEMGLGKTLQCITLIWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 201 LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 244
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 245 GGSKDEIDQKLEGFMNQRGVRVPSPILIISYETFRLHVGVLQKGSV-----GLVICDEGH 299
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T E
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGT----AHE 352
Query: 303 ISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ A+ D +E+L+EL + + +L + LP VV
Sbjct: 353 FKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVV 412
Query: 359 I--LQP--DEFQKRLCKAVEGVKSFVELNYCVSLLSV---------HPSLLPQQFFE--- 402
L P E KR K + + E VS LS HP+L+ + E
Sbjct: 413 CCRLTPLQTELYKRFLKQAKPAEELREGKMTVSSLSSITLLKKLCNHPALIYDKCVEEED 472
Query: 403 ----SFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQ 455
+ ++ + L+P+ K L +L ++ +++KV++ S Y + L L +
Sbjct: 473 GFEGALEIFPPTYSAKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKL 532
Query: 456 LRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
R R LY +DG +KKR + N+P S + + S+KA G+NL+GA
Sbjct: 533 CRAR-------RYLYVRLDGTMSIKKRAKVVERFNNPLSPDFVFMLSSKAGGCGLNLIGA 585
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 586 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
>gi|332808861|ref|XP_513146.3| PREDICTED: DNA repair and recombination protein RAD54-like isoform
2 [Pan troglodytes]
Length = 747
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 142/540 (26%), Positives = 240/540 (44%), Gaps = 79/540 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W+ + S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVKFLWECV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 201 LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 244
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 245 GGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSV-----GLVICDEGH 299
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T E
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGT----AHE 352
Query: 303 ISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ A+ D +E+L+EL + + +L + LP VV
Sbjct: 353 FKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVV 412
Query: 359 I--LQP--DEFQKRLCKAVEGVKSFVELNYC---------VSLLSVHPSLLPQQ------ 399
L P E KR + + + +E + L HP+L+ +
Sbjct: 413 CCRLTPLQTELYKRFLRQAKPAEELLESKMSVSSLSSITSLKKLCNHPALIHDKCVEEED 472
Query: 400 -FFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQ 455
F + D+ + L+P+ K L +L ++ +++KV++ S Y + L L +
Sbjct: 473 GFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKL 532
Query: 456 LRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
R R LY +DG +KKR + N PSS + + S+KA G+NL+GA
Sbjct: 533 CRAR-------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGA 585
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 586 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
>gi|281351942|gb|EFB27526.1| hypothetical protein PANDA_008144 [Ailuropoda melanoleuca]
Length = 716
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 147/540 (27%), Positives = 239/540 (44%), Gaps = 79/540 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W E S G +GCI++ G GKT + +
Sbjct: 121 KVLRPHQREGVKFLW----------ECVTSRRVPGSHGCIMADEMGLGKTLQCITLMWTL 170
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P CRP V+++P S++ W E KW L G+ A+ D
Sbjct: 171 LRQSPECRPEIDKAVVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 214
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 215 GGSKDEIDQKLEGFMNQRGARVPSPILIISYETFRLHVGVLQKGSV-----GLVICDEGH 269
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T E
Sbjct: 270 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGLLGT----AHE 322
Query: 303 ISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ A+ D +E+L+EL + + +L + LP VV
Sbjct: 323 FKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVV 382
Query: 359 I--LQP--DEFQKRLCKAVEGVKSFVELNYCVSLLSV---------HPSLLPQQFFESFD 405
L P E KR + + + E VS LS HP+L+ + E D
Sbjct: 383 CCRLTPLQTELYKRFLRQAKPAEELREGKMSVSSLSSITLLKKLCNHPALIYDKCVEEED 442
Query: 406 VDSAKL-------ARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQ 455
L + L+P+ K L +L ++ +++KV++ S Y + L L +
Sbjct: 443 GFEGALEIFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKL 502
Query: 456 LRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
R R LY +DG +KKR + N+P S + + S+KA G+NL+GA
Sbjct: 503 CRAR-------RYLYVRLDGTMSIKKRAKVVERFNNPLSPDFVFMLSSKAGGCGLNLIGA 555
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 556 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 615
>gi|397483209|ref|XP_003812796.1| PREDICTED: DNA repair and recombination protein RAD54-like [Pan
paniscus]
Length = 747
Score = 162 bits (411), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 142/540 (26%), Positives = 240/540 (44%), Gaps = 79/540 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W+ + S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVKFLWECV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 201 LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 244
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 245 GGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSV-----GLVICDEGH 299
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T E
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGT----AHE 352
Query: 303 ISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ A+ D +E+L+EL + + +L + LP VV
Sbjct: 353 FKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVV 412
Query: 359 I--LQP--DEFQKRLCKAVEGVKSFVE---------LNYCVSLLSVHPSLLPQQ------ 399
L P E KR + + + +E + L HP+L+ +
Sbjct: 413 CCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIHDKCVEEED 472
Query: 400 -FFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQ 455
F + D+ + L+P+ K L +L ++ +++KV++ S Y + L L +
Sbjct: 473 GFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRSCSSDKVVLVSNYTQTLDLFEKL 532
Query: 456 LRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
R R LY +DG +KKR + N PSS + + S+KA G+NL+GA
Sbjct: 533 CRAR-------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGA 585
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 586 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
>gi|158258659|dbj|BAF85300.1| unnamed protein product [Homo sapiens]
Length = 747
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 142/540 (26%), Positives = 240/540 (44%), Gaps = 79/540 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W+ + S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVKFLWECV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 201 LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 244
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 245 GGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSV-----GLVICDEGH 299
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T E
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGT----AHE 352
Query: 303 ISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ A+ D +E+L+EL + + +L + LP VV
Sbjct: 353 FKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVV 412
Query: 359 I--LQP--DEFQKRLCKAVEGVKSFVE---------LNYCVSLLSVHPSLLPQQ------ 399
L P E KR + + + +E + L HP+L+ +
Sbjct: 413 CCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEED 472
Query: 400 -FFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQ 455
F + D+ + L+P+ K L +L ++ +++KV++ S Y + L L +
Sbjct: 473 GFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKL 532
Query: 456 LRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
R R LY +DG +KKR + N PSS + + S+KA G+NL+GA
Sbjct: 533 CRAR-------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGA 585
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 586 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
>gi|1495483|emb|CAA66379.1| RAD54 [Homo sapiens]
Length = 747
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 142/540 (26%), Positives = 240/540 (44%), Gaps = 79/540 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W+ + S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVKFLWECV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 201 LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 244
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 245 GGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSV-----GLVICDEGH 299
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T E
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGT----AHE 352
Query: 303 ISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ A+ D +E+L+EL + + +L + LP VV
Sbjct: 353 FKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVV 412
Query: 359 I--LQP--DEFQKRLCKAVEGVKSFVE---------LNYCVSLLSVHPSLLPQQ------ 399
L P E KR + + + +E + L HP+L+ +
Sbjct: 413 CCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEED 472
Query: 400 -FFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQ 455
F + D+ + L+P+ K L +L ++ +++KV++ S Y + L L +
Sbjct: 473 GFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKL 532
Query: 456 LRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
R R LY +DG +KKR + N PSS + + S+KA G+NL+GA
Sbjct: 533 CRAR-------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGA 585
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 586 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
>gi|410261060|gb|JAA18496.1| RAD54-like [Pan troglodytes]
gi|410351929|gb|JAA42568.1| RAD54-like [Pan troglodytes]
Length = 747
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 142/540 (26%), Positives = 240/540 (44%), Gaps = 79/540 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W+ + S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVKFLWECV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 201 LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 244
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 245 GGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSV-----GLVICDEGH 299
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T E
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGT----AHE 352
Query: 303 ISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ A+ D +E+L+EL + + +L + LP VV
Sbjct: 353 FKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVV 412
Query: 359 I--LQP--DEFQKRLCKAVEGVKSFVE---------LNYCVSLLSVHPSLLPQQ------ 399
L P E KR + + + +E + L HP+L+ +
Sbjct: 413 CCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIHDKCVEEED 472
Query: 400 -FFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQ 455
F + D+ + L+P+ K L +L ++ +++KV++ S Y + L L +
Sbjct: 473 GFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKL 532
Query: 456 LRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
R R LY +DG +KKR + N PSS + + S+KA G+NL+GA
Sbjct: 533 CRAR-------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGA 585
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 586 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
>gi|71008587|ref|XP_758230.1| hypothetical protein UM02083.1 [Ustilago maydis 521]
gi|46097848|gb|EAK83081.1| hypothetical protein UM02083.1 [Ustilago maydis 521]
Length = 870
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 144/537 (26%), Positives = 234/537 (43%), Gaps = 74/537 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ EG +F+++ G + GCI++ G GKT + +
Sbjct: 284 KVLRPHQVEGVKFLYRCTTGLV----------VEKAYGCIMADEMGLGKTLQCIALMWTL 333
Query: 128 MKLHP--------RCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVA 179
+K P +C +I+ P S++ W E KW G G +A
Sbjct: 334 LKQSPIAHKSTIEKC--IIVCPSSLVRNWANELIKW--------------LGPAAPGNLA 377
Query: 180 LMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFD 239
L + R+ + ++ +SY L +EL + GL + D
Sbjct: 378 LDGKLSKDEMIEATRRWCSASGRAISQPVMIVSYETLRNL--QEELGNTEV---GLLLCD 432
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS 299
EGH +N D+ F+AL++IK RRR+ILSGTP QN+ E L+ E RK+
Sbjct: 433 EGHRLKNADSLTFQALTQIKVRRRVILSGTPIQNDLSEYFALLNFANPELLGSRTEFRKN 492
Query: 300 GR-EISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
I K + A + AN EKL +L ++ F+ +L + LP VV
Sbjct: 493 FEIAILKGRDAEATEKQQQEAN----EKLSQLSALVSRFIIRRTNDLLSKYLPVKYEHVV 548
Query: 359 ILQPDEFQ-------------KRLCKAVEGVKSFVELNYCVSLLSVHPSLL--------- 396
+ FQ K+L + G + + L + HP LL
Sbjct: 549 FCKMSAFQLDLYRLFIRSPEIKKLLRGT-GSQPLKAIGILKKLCN-HPDLLDLPNDLEGS 606
Query: 397 PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQL 456
+ F E++ + +L + + RFL + ++N+K+++ S Y + L + E++
Sbjct: 607 EEYFPEAYTPRDRRYVNPELSGKMMVLQRFLET-IRATSNDKIVLISNYTQTLD-VFERM 664
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
W + +DG + KRQ ++ NDP + I L S+KA G+NL+GA+R+
Sbjct: 665 CRANRW----GMFRLDGTMTINKRQKLVDRFNDPEGKEFIFLLSSKAGGCGLNLIGANRL 720
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
VL D WNP ++QA++R +R GQK+ VY I + ++E L+RQ+ K S+ V
Sbjct: 721 VLFDPDWNPASDQQALARVWRDGQKKSCFVYRFIATGSIEEKILQRQSHKQSLSSCV 777
>gi|216548186|ref|NP_003570.2| DNA repair and recombination protein RAD54-like [Homo sapiens]
gi|216548193|ref|NP_001136020.1| DNA repair and recombination protein RAD54-like [Homo sapiens]
gi|51316508|sp|Q92698.2|RAD54_HUMAN RecName: Full=DNA repair and recombination protein RAD54-like;
AltName: Full=RAD54 homolog; Short=hHR54; Short=hRAD54
gi|47777671|gb|AAT38113.1| RAD54-like (S. cerevisiae) [Homo sapiens]
gi|111307699|gb|AAI21061.1| RAD54-like (S. cerevisiae) [Homo sapiens]
gi|111309424|gb|AAI21060.1| RAD54-like (S. cerevisiae) [Homo sapiens]
gi|119627335|gb|EAX06930.1| RAD54-like (S. cerevisiae), isoform CRA_b [Homo sapiens]
Length = 747
Score = 162 bits (410), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 142/540 (26%), Positives = 240/540 (44%), Gaps = 79/540 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W+ + S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVKFLWECV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 201 LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 244
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 245 GGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSV-----GLVICDEGH 299
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T E
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGT----AHE 352
Query: 303 ISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ A+ D +E+L+EL + + +L + LP VV
Sbjct: 353 FKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVV 412
Query: 359 I--LQP--DEFQKRLCKAVEGVKSFVE---------LNYCVSLLSVHPSLLPQQ------ 399
L P E KR + + + +E + L HP+L+ +
Sbjct: 413 CCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEED 472
Query: 400 -FFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQ 455
F + D+ + L+P+ K L +L ++ +++KV++ S Y + L L +
Sbjct: 473 GFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKL 532
Query: 456 LRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
R R LY +DG +KKR + N PSS + + S+KA G+NL+GA
Sbjct: 533 CRAR-------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGA 585
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 586 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
>gi|426329478|ref|XP_004025767.1| PREDICTED: DNA repair and recombination protein RAD54-like [Gorilla
gorilla gorilla]
Length = 747
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 142/540 (26%), Positives = 240/540 (44%), Gaps = 79/540 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W+ + S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVKFLWECV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 201 LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 244
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 245 GGSKDEIDQKLEGFMNQRGARVPSPILIISYETFRLHVGVLQKGSV-----GLVICDEGH 299
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T E
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGT----AHE 352
Query: 303 ISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ A+ D +E+L+EL + + +L + LP VV
Sbjct: 353 FKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVV 412
Query: 359 I--LQP--DEFQKRLCKAVEGVKSFVE---------LNYCVSLLSVHPSLLPQQ------ 399
L P E KR + + + +E + L HP+L+ +
Sbjct: 413 CCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIHDKCVEEED 472
Query: 400 -FFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQ 455
F + D+ + L+P+ K L +L ++ +++KV++ S Y + L L +
Sbjct: 473 GFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKL 532
Query: 456 LRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
R R LY +DG +KKR + N PSS + + S+KA G+NL+GA
Sbjct: 533 CRAR-------RYLYVRLDGTMSIKKRAKVVERFNSPSSSDFVFMLSSKAGGCGLNLIGA 585
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 586 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
>gi|338721715|ref|XP_001915622.2| PREDICTED: LOW QUALITY PROTEIN: DNA repair and recombination
protein RAD54-like [Equus caballus]
Length = 763
Score = 162 bits (409), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 140/536 (26%), Positives = 234/536 (43%), Gaps = 71/536 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W E S G +GCI++ G GKT + +
Sbjct: 159 KVLRPHQREGVKFLW----------ECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 208
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 209 LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 252
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 253 GGSKDEIDQKLEGFMNQRGARVPSPILIISYETFRLHVGVLQKGSV-----GLVICDEGH 307
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T + +
Sbjct: 308 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGTAHEFKKH 364
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQP 362
++ H +E+L+EL + + +L + LP VV +
Sbjct: 365 FELPILKGRDAAASEADRHLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRL 424
Query: 363 DEFQKRLCKA-VEGVKSFVELN------------YCVSLLSVHPSLLPQQFFE------- 402
Q L K + K EL + L HP+L+ + E
Sbjct: 425 TPLQNELYKKFLRQAKPAEELREGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFEG 484
Query: 403 SFDVDSAKLARLKLDPEAGIKTRFLLILLELST---NEKVLVFSQYIEPLTLIMEQLRHR 459
+ D+ + L+P+ K L +L ++ N+KV++ S Y + L L + R R
Sbjct: 485 ALDIFPPGYSSKALEPQLSGKMLVLDYILAVTRSRGNDKVVLVSNYTQTLDLFEKLCRAR 544
Query: 460 FNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
LY +DG +KKR + N+P S + + S+KA G+NL+GA+R+V
Sbjct: 545 -------RYLYVRLDGTMSIKKRAKVVERFNNPLSPDFVFMLSSKAGGCGLNLIGANRLV 597
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 598 MFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 653
>gi|156369786|ref|XP_001628155.1| predicted protein [Nematostella vectensis]
gi|156215124|gb|EDO36092.1| predicted protein [Nematostella vectensis]
Length = 756
Score = 161 bits (408), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 151/550 (27%), Positives = 246/550 (44%), Gaps = 85/550 (15%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F++ G G GCI++ G GKT + +
Sbjct: 150 KVLRPHQREGVKFLYDCTTGA----------RIQGSYGCIMADEMGLGKTLQCITLIWTL 199
Query: 128 MKLHPRCRPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P +P+ I+AP S++ W E KW L + N A+ D
Sbjct: 200 LRQGPSAQPIVSKVIIVAPSSLVKNWYNELYKW-------------LGNRINALAI---D 243
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ + L RY+ + T +L +SY F +L + +G + GL + DEGH
Sbjct: 244 SGSKDEIDRNLERYMSQQGSRTPTPVLIISYETF-RLHAAALHNGSV----GLVICDEGH 298
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGEVLRTVRKSGR 301
+N ++ ++AL+++ RR++LSGTP QN+ E + + V Q G V RK
Sbjct: 299 RLKNLESQTYQALNKLNATRRVLLSGTPIQNDLLEYFSLVHFVNQGILGTVSEFKRKFET 358
Query: 302 EISKAKHASLISSIGRCANHRDD-EKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
I + + A A H+ E+L EL + + +L + LP VV
Sbjct: 359 PILRGRDADATD-----AEHKKGIERLTELASLVNKCIIRRTAAILSKYLPIKVEQVVCC 413
Query: 361 QPDEFQ----KRLC-------KAVEGVK------SFVELNYCVSL--LSVHPSLLPQQ-- 399
+ Q KRL K EG K S L + SL L HP L+ ++
Sbjct: 414 RLTALQTAIYKRLIHSKALKIKLAEGSKGKPGGVSTSSLGFITSLKKLCNHPELIYEKAQ 473
Query: 400 -----FFESFDVDSAKLARLKLDPEAGIKTR---FLLILLELSTNEKVLVFSQYIEPLTL 451
F ++ K + PE K + ++L + + ++++KV++ S Y + L L
Sbjct: 474 MEDEGFEGVLEMFPQKFDLKNVQPELSGKMQVLDYILAVTKATSDDKVVLVSNYTQTLDL 533
Query: 452 IMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLV 511
+ R R + + +DG +KKRQ ++ NDP I + S+KA G+NL+
Sbjct: 534 FEKLCRQR-----RYQHVRLDGSMSIKKRQKIVDRFNDPKGGDFIFMLSSKAGGCGLNLI 588
Query: 512 GASRVVLLDVVWNPFVERQAISRAYRLGQKR--------VVHVYHLITSETLEWDKLRRQ 563
GA+R+V+ D WNP + QA++R +R GQK+ V +Y L+++ T+E +RQ
Sbjct: 589 GANRLVMFDPDWNPANDDQAMARVWRDGQKKKAIFDLLLQVFIYRLLSTGTIEEKIFQRQ 648
Query: 564 ARKVWWSNMV 573
A K S+ V
Sbjct: 649 AHKKALSSCV 658
>gi|354470052|ref|XP_003497406.1| PREDICTED: DNA repair and recombination protein RAD54 isoform 1
[Cricetulus griseus]
gi|354470056|ref|XP_003497407.1| PREDICTED: DNA repair and recombination protein RAD54 isoform 2
[Cricetulus griseus]
Length = 744
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 149/542 (27%), Positives = 250/542 (46%), Gaps = 83/542 (15%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W E S G +GCI++ G GKT + +
Sbjct: 148 KVLRPHQREGVKFLW----------ECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 197
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 198 LRQSPECKPEIEKAVVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 241
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 242 GGSKDEIDRKLEGFMNQRGARVPSPILIISYETFRLHVGVLKKGNV-----GLVICDEGH 296
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR-------QEFGE---- 291
+N + ++AL + T RR+++SGTP QN+ E + + V QEF +
Sbjct: 297 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKHFEL 356
Query: 292 -VLRT----VRKSGREISKAKHASLISSIGRCANHRDDEKL-KELKEKIAPFVNVHKGTV 345
+LR+ ++ R++ + + LIS + RC R + L K L KI V + T
Sbjct: 357 PILRSRDAAASEADRQLGEERLRELISIVNRCLIRRTSDILSKYLPVKIEQVVCC-RLTP 415
Query: 346 LQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSL--LSVHPSLLPQQ---- 399
LQ L + + +P+E + EG S L+ SL L HP+L+ +
Sbjct: 416 LQTEL--YKRFLRQAKPEE------ELREGKMSVSSLSSITSLKKLCNHPALIYDKCVSG 467
Query: 400 ---FFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIM 453
F ++ D+ ++P+ K L +L ++ +++KV++ S Y + L L
Sbjct: 468 EDGFEDTLDIFPPGYTSKAVEPQLSGKMLVLDYILAMTRSRSSDKVVLVSNYTQTLDLFE 527
Query: 454 EQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLV 511
+ R R LY +DG +KKR + N PSS + + S+KA G+NL+
Sbjct: 528 KLCRAR-------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLI 580
Query: 512 GASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSN 571
GA+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+
Sbjct: 581 GANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSS 640
Query: 572 MV 573
V
Sbjct: 641 CV 642
>gi|410967175|ref|XP_003990097.1| PREDICTED: DNA repair and recombination protein RAD54-like [Felis
catus]
Length = 747
Score = 161 bits (408), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 145/540 (26%), Positives = 242/540 (44%), Gaps = 79/540 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W E S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVKFLW----------ECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L+G+ A+ D
Sbjct: 201 LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKW-------------LAGRIQPLAI---D 244
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F +L G G + GL + DEGH
Sbjct: 245 GGSKDEIDQKLEGFMNQRGTRVPSPILIISYETF-RLHVGILQKGSV----GLVICDEGH 299
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T E
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGT----AHE 352
Query: 303 ISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ S A+ D +++L+EL + + +L + LP VV
Sbjct: 353 FKKHFELPILKSRDAAASEADRQLGEDRLRELTSIVNRCLIRRTSDILSKYLPVKIEQVV 412
Query: 359 ILQPDEFQKRLCKAV-----------EGVKSFVELNYCVSL--LSVHPSLLPQQFFE--- 402
+ Q L K EG S L+ L L HP+L+ + E
Sbjct: 413 CCRLTSLQTELYKKFLRQAKPAEELREGKMSVSSLSSITLLKKLCNHPALIYDKCVEEEG 472
Query: 403 ----SFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQ 455
+ ++ + L+P+ K L +L ++ +++KV++ S Y + L L +
Sbjct: 473 GFEGALEIFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKL 532
Query: 456 LRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
R R LY +DG +KKR + N+P S + + S+KA G+NL+GA
Sbjct: 533 CRAR-------RYLYVRLDGTMSIKKRAKIVERFNNPLSPDFVFMLSSKAGGCGLNLIGA 585
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 586 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
>gi|291398984|ref|XP_002715711.1| PREDICTED: RAD54-like protein [Oryctolagus cuniculus]
Length = 755
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 142/540 (26%), Positives = 241/540 (44%), Gaps = 79/540 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W+ + S G +GCI++ G GKT + +
Sbjct: 159 KVLRPHQREGVKFLWECV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 208
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 209 LRQSPDCKPEIDKAVVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 252
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 253 GGSKDEIDQKLEGFMNQRGARVPSPILIISYETFRLHVGVLQKGSV-----GLVICDEGH 307
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + TRRR+++SGTP QN+ E SLV +L T +E
Sbjct: 308 RLKNSENQTYQALDSLNTRRRVLISGTPIQNDLLEY---FSLVHFVNSGILGT----AQE 360
Query: 303 ISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ S A+ D +E+L+EL + + +L + LP VV
Sbjct: 361 FKKHFELPILKSRDAAASEADRQLGEERLRELTGVVNRCLIRRTSDILSKYLPVKIEQVV 420
Query: 359 I--LQP--DEFQKRLCKAVEGVKSFVE---------LNYCVSLLSVHPSLLPQQFFE--- 402
L P E KR + + + E + L HP+L+ + E
Sbjct: 421 CCRLTPLQTELYKRFLRQAKPAEELHEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEED 480
Query: 403 ----SFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQ 455
+ D+ ++P+ K L +L ++ +++KV++ S Y + L L +
Sbjct: 481 GFEGALDIFPPGYNSKAIEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKL 540
Query: 456 LRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
R R LY +DG +KKR + N P+S + + S+KA G+NL+GA
Sbjct: 541 CRAR-------RYLYVRLDGTMSIKKRAKVVERFNSPTSPDFVFMLSSKAGGCGLNLIGA 593
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 594 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 653
>gi|342885837|gb|EGU85789.1| hypothetical protein FOXB_03637 [Fusarium oxysporum Fo5176]
Length = 1979
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 146/569 (25%), Positives = 242/569 (42%), Gaps = 94/569 (16%)
Query: 55 QGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGT 114
QG ++ + D+ +++ HQ +G FIW I + + GC+++H G
Sbjct: 1023 QGLIY--IHEDIGRRIKDHQIDGVRFIWNQIVRDPSVRQ-----------GCLLAHTMGL 1069
Query: 115 GKTGLTLVFLQAYMKLHPRCRPVIIA---------------PRSMLLTWEEEFKKWGIDI 159
GKT + L A + P ++A P +++ W +E KW
Sbjct: 1070 GKTMQVITVLVALAEAAQSKDPSVVAQIPEDLREPRILVLCPAALVDNWIDELLKWA--- 1126
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
A L + RK R + SW G G+L L Y +F+K+
Sbjct: 1127 ----------------PADLLGELRKVSSNTPVEERAAVVSSWASGRGVLTLGYEMFKKI 1170
Query: 220 VS-GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
++ +EL+ +L + P + + DE H +N ++ A SR +T+ RI L+G+P N+ E
Sbjct: 1171 MNLSEELADLLTNRPDVVIADEAHKMKNRESQTNLASSRFRTKSRIALTGSPLSNSVLEY 1230
Query: 279 ENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
+ V F L + + L + R +LK L++ +AP +
Sbjct: 1231 FAMIDWVAPNF---LGPFSEFSHIYASPVERGLYNDSTPAEKRRAQMRLKALEQLVAPKI 1287
Query: 339 NVHKGTVLQESLPGLRHSVVILQPDEFQKRLCK------AVEGVKS----FVELNYCVSL 388
N H L+ LP + ++ + P QK+L + A EG S F +N+ + L
Sbjct: 1288 NRHTIAALKSDLPPKQEFIIFVPPTTPQKQLYQLYIRGVAREGTDSQAETFAAINH-LGL 1346
Query: 389 LSVHPSL----------------------LPQQFFESFDVDSAKLARLKLDPEAGIKTRF 426
+ HP P+ F +++ R P +KT
Sbjct: 1347 ICSHPRCFEAKVKAIQKGIRSNSDNEDKSFPKSMIPEF-LETLHSFRDLETPTLSLKTEL 1405
Query: 427 LLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSI 484
L I+L+ + +KVL+FSQ + L I R + + V +DG V RQ
Sbjct: 1406 LTIILDEARQVKDKVLIFSQSLHTLDYIENMCR-----MQRRTVSRLDGSTPVPSRQRQT 1460
Query: 485 NVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVV 544
N+ S + + L ST A G+N+ GA+RVV+ DV +NP E+QA+ RAYR+GQ++ V
Sbjct: 1461 KDFNEGSKE--VFLISTTAGGVGLNIQGANRVVIFDVRYNPSDEQQAVGRAYRIGQQKPV 1518
Query: 545 HVYHLITSETLEWDKLRRQARKVWWSNMV 573
VY + + T E + RQ K+ ++ V
Sbjct: 1519 FVYRFMVAGTFEDNLHNRQVFKMQLASRV 1547
>gi|348522722|ref|XP_003448873.1| PREDICTED: DNA repair and recombination protein RAD54 [Oreochromis
niloticus]
Length = 747
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 150/546 (27%), Positives = 242/546 (44%), Gaps = 91/546 (16%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQR+G +F+W+ + G G GCI++ G GKT + +
Sbjct: 154 KVLRPHQRQGVKFMWECVTG----------RRIPGSYGCIMADEMGLGKTLQCITLMWTL 203
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKW-GIDIPFYNLNKPELSGKENNGAVALM 181
++ P +P ++++P S++ W E +KW G I +A+
Sbjct: 204 LRQSPDTKPEIDKAIVVSPSSLVHNWYNEVRKWLGTRI----------------TPLAID 247
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLF----EKLVSGDELSGILLDLPGLFV 237
K G K L +V S + T IL +SY F E L G GL +
Sbjct: 248 GGSKEGINK-QLESFVSQRSLRAHTPILIISYETFRLHAEVLHRGK---------VGLII 297
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR-------QEFG 290
DEGH +N D ++AL+ + +RR+++SGTP QN+ E + + V QEF
Sbjct: 298 CDEGHRLKNSDNQTYQALNTMSAQRRVLISGTPIQNDLLEYFSLVHFVNAGILGTSQEFK 357
Query: 291 EVLRTVRKSGREISKA---------KHASLISSIGRCANHRDDEKL-KELKEKIAPFVNV 340
+ GR+ + K LIS + RC R + L K L KI V
Sbjct: 358 KRFELPILKGRDADASDKERLSGEEKLKELISIVNRCLIRRTSDILSKYLPMKIEQIVCC 417
Query: 341 HKGTVLQESLPGLRHSVVILQPDE-FQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQ 399
+ T LQ L +H + +P E QK C HP+L+ ++
Sbjct: 418 -RLTPLQTEL--YKHFLKQAKPIETLQKGKISVSSLSSITSLKKLCN-----HPALIYEK 469
Query: 400 FFE-------SFDVDSAKLARLKLDPEAGIKT---RFLLILLELSTNEKVLVFSQYIEPL 449
E + ++ + ++P+ K ++L + + +T +KV++ S Y + L
Sbjct: 470 CVEREEGFEGALELFPPNYSTKDVEPQLSGKMLVLDYILAMTKTTTGDKVVLVSNYTQTL 529
Query: 450 TLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEG 507
L + R R LY +DG +KKR + N PS+ I + S+KA G
Sbjct: 530 DLFEKLCRSR-------RYLYVRLDGTMSIKKRAKIVEKFNSPSNPEFIFMLSSKAGGCG 582
Query: 508 INLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567
+NL+GA+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E L+RQA K
Sbjct: 583 LNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKK 642
Query: 568 WWSNMV 573
S+ V
Sbjct: 643 ALSSCV 648
>gi|354545782|emb|CCE42510.1| hypothetical protein CPAR2_201530 [Candida parapsilosis]
Length = 836
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 148/541 (27%), Positives = 252/541 (46%), Gaps = 77/541 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ G +F+++ AG +D GCI++ G GKT L +
Sbjct: 243 KILRPHQIAGVKFLYRCTAGLMD----------PKAKGCIMADEMGLGKTLQCLTLMWTL 292
Query: 128 MKLHPRCR-----PVIIAPRSMLLTWEEEFKKW---GIDIPFYNLNKPELSGKENNGAVA 179
+K PR + +I+ P S++ W E KW G+ P K S K N A
Sbjct: 293 LKQSPRGKRTIEKCIIVCPSSLVRNWANEIVKWLGEGVLTPLAVDGK---STKSNELGAA 349
Query: 180 LMD-NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVF 238
L + +GR ++R V L +SY + V D+L+G + GL +
Sbjct: 350 LQQWSTAQGRN---IVRPV-----------LIISYETLRRNV--DKLAGTEV---GLMLA 390
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK 298
DEGH +N ++ F AL+ ++ RR+ILSGTP QN+ E + L+ + RK
Sbjct: 391 DEGHRLKNGESLTFTALNSLRCERRVILSGTPIQNDLSEYFSLLNFANPGYLGTRNDFRK 450
Query: 299 S-GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
+ I + + A + D KL EL + ++ F+ +L + LP +++
Sbjct: 451 NFENAILRGRDADATDK----EREKGDAKLIELSQLVSKFIIRRTNDILSKYLP-VKYEY 505
Query: 358 VI------LQPDEFQ--------KRLCKAV--EGVKSFVELNYCVSLLSVHPSLLPQQFF 401
V+ +Q D + K+L K + + +K+ L + + +
Sbjct: 506 VLFTGLSPMQKDLYNHFITSPEIKKLIKGIGSQPLKAIGMLKKLCNHPDLLDLPDDLEGC 565
Query: 402 ESF---DVDSAKLAR-LKLDPEAGIKTRFLLI-----LLELSTNEKVLVFSQYIEPLTLI 452
ES D +S+ A + D + +F+++ + T++K+++ S Y + L LI
Sbjct: 566 ESLKPEDYESSITATGRRRDVQTWFSGKFMILERFLHKIHRETDDKIVLISNYTQTLDLI 625
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
+ R N + G L +DG ++ KRQ ++ NDP+ I L S+KA GINL+G
Sbjct: 626 EKMCR---NKKYG--ALRLDGTMNINKRQKLVDKFNDPNGSEFIFLLSSKAGGCGINLIG 680
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNM 572
A+R++L+D WNP ++QA++R +R GQK+ +Y I++ T+E +RQ+ K+ S+
Sbjct: 681 ANRLILIDPDWNPASDQQALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSC 740
Query: 573 V 573
V
Sbjct: 741 V 741
>gi|351698695|gb|EHB01614.1| DNA repair and recombination protein RAD54-like protein
[Heterocephalus glaber]
Length = 811
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 143/540 (26%), Positives = 239/540 (44%), Gaps = 79/540 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W E S G GCI++ G GKT + +
Sbjct: 215 KVLRPHQREGVKFLW----------ECVTSRRIPGSYGCIMADEMGLGKTLQCIALMWTL 264
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 265 LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 308
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 309 GGSKDEIDQKLEGFMNQRGARVPSPILIISYETFRLHVGVLQKGSV-----GLVICDEGH 363
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T +E
Sbjct: 364 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGT----AQE 416
Query: 303 ISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ S A+ D +E+L+EL + + +L + LP VV
Sbjct: 417 FKKHFELPILKSRDAAASEADRQLGEERLQELISIVNRCLIRRTSDILSKYLPVKIEQVV 476
Query: 359 I--LQP--DEFQKRLCKAVEGVKSFVE---------LNYCVSLLSVHPSLLPQQFFE--- 402
L P E KR + + + E + L HP+L+ + E
Sbjct: 477 CCRLTPLQTELYKRFLRQAKPAEELREGKMSVSSLSSITSLKKLCNHPALIHDKCVEEED 536
Query: 403 ----SFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQ 455
+ D+ + ++P+ K L +L ++ +++KV++ S Y + L L +
Sbjct: 537 GFEGALDIFPPGYSSKAIEPQLSGKMLVLDYILAVTRSCSSDKVVLVSNYTQTLDLFEKL 596
Query: 456 LRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
R R LY +DG +KKR + N PSS + + S+KA G+NL+GA
Sbjct: 597 CRAR-------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGA 649
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 650 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 709
>gi|313233227|emb|CBY24342.1| unnamed protein product [Oikopleura dioica]
Length = 1202
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 147/562 (26%), Positives = 257/562 (45%), Gaps = 101/562 (17%)
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
L PR + + + PHQR G +F++ + G + G NGCI++ G GKT
Sbjct: 149 LDPR-LSRVLRPHQRAGVKFLYDCVTG----------KAIEGYNGCIMADDMGLGKTLQC 197
Query: 121 LVFLQAYMKLHPRCRPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENN 175
+ + ++ P C+P+ +I+P S++ W+ EFKKW D E+S
Sbjct: 198 VALIWTLVRQGPDCKPIAPLTIVISPSSLVKNWQNEFKKWLGD---------EVS----- 243
Query: 176 GAVALMDNRKRGRGKVGLIRYVKLYS-----WKMGTGILGLSY---RLFEKLVSGDELSG 227
VA+ G GK + + ++ + ++ T +L +SY RL K+++ +
Sbjct: 244 -TVAI-----DGGGKKDIDKKLEAFCSQQILGRVHTPVLFISYETFRLHAKVLNKRPI-- 295
Query: 228 ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-R 286
GL + DEGH +N D+ + AL +++ RR++LSGTP QN+ E + + V R
Sbjct: 296 ------GLMICDEGHRLKNPDSQTYLALDKLECPRRVLLSGTPIQNDLLEYYSLVHFVNR 349
Query: 287 QEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVL 346
G ++ I K++ A + +K+K+L E + + +L
Sbjct: 350 NLLGTSADFRKEYENPILKSRDADCTDK----EKQKGQDKIKKLLEVVNRCMIRRTNDIL 405
Query: 347 QESLPGLRHSVVIL-----QPDEF------QKRLCKAVEGVKSFVELNYCVSL--LSVHP 393
+ LP V+ + Q + +KRL EG++ L +L L HP
Sbjct: 406 SKYLPPKVEMVITIPLIGNQKASYIKFVKEKKRLLDT-EGMQGPSSLQAITALKKLCNHP 464
Query: 394 SLLP-----------QQFFESFDVDSAKLARLKLDPEAGIKTRFLLI-----LLELSTNE 437
+L+ Q +++ F D K DP + +FLL+ + ++ T++
Sbjct: 465 ALVYPLINNPEYKFLQPYYKDFKPD-------KFDPT--LSGKFLLLDLILAITKMHTDD 515
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
K ++ S Y + L E + R G + +DG +KKR + N P S +
Sbjct: 516 KFVLVSNYTQTLDTCQELCKLR-----GYGYVRLDGTMAIKKRSKLVAEFNSPESSDYVF 570
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
+ S+KA G+NL+GA+R+++ D WNP + QA++R +R GQK+ +Y L+ + T+E
Sbjct: 571 MLSSKAGGCGLNLIGANRLIMFDPDWNPANDDQAMARVWRDGQKKRCFIYRLVAAGTIEE 630
Query: 558 DKLRRQARKVWWSNMVFPSSDG 579
L+RQ K S +V + +
Sbjct: 631 KMLQRQLHKKALSGVVVDAQEA 652
>gi|170032260|ref|XP_001844000.1| DNA repair and recombination protein RAD54 [Culex quinquefasciatus]
gi|167872116|gb|EDS35499.1| DNA repair and recombination protein RAD54 [Culex quinquefasciatus]
Length = 821
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 158/549 (28%), Positives = 233/549 (42%), Gaps = 84/549 (15%)
Query: 60 ELVPRDVRKKMFPHQ------------REGFEFIWKNIAGGIDLDELKNSTSTGGGNGCI 107
+ VP +R+ F HQ REG F+++ + G +K S G I
Sbjct: 205 DFVPLTMREPSFDHQWKYNKGKVPVVTREGVSFLYECVLG------MKREDSEQ--FGAI 256
Query: 108 ISHAPGTGKTGLTLVFLQAYMKLHPRCRPV-----IIAPRSMLLTWEEEFKKWGIDIPFY 162
++ G GKT TL + MK P +P+ I+ P S++ W+ E KW Y
Sbjct: 257 LADEMGLGKTLQTLALIYTLMKQGPYGQPIVKRVLIVTPSSLVDNWDREITKWLKQERIY 316
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222
+ G N +K Y+ IL +SY L K VS
Sbjct: 317 TF----IVGPNNK---------------------LKKYAQSAHIPILIISYELLAKQVS- 350
Query: 223 DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
EL + DL V DEGH +N + + L I RRRI+L+GTP QN+ QE + +
Sbjct: 351 -ELETVKFDL---IVCDEGHRLKNSSIKIAEVLDGIDCRRRILLTGTPIQNDLQEFHSLI 406
Query: 283 SLVRQEF-GEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVH 341
+ V G K I +++ +++ + R L EL + F+
Sbjct: 407 NFVNPGLLGTYSEFKAKYENPIVQSQQPNVLPQLQELGQTR----LNELNSITSSFILRR 462
Query: 342 KGTVLQESLPGLRHSVVILQPDEFQKRLCKAV------EGVKSFVELNYCVSLLSV--HP 393
V LP + V+ P E Q+RL G + L L + HP
Sbjct: 463 TQEVNNSYLPEKQELVIFAHPSELQERLLTLALKHYEQSGTSAITPLQLITILKKICNHP 522
Query: 394 SLLPQQFFESFDVDSAK---LARL----KLDPEAGIKTRFLLILLE--LSTNEKVLVFSQ 444
SL+ +S D DS + +++L + P K L LLE + EKV++ S
Sbjct: 523 SLISTT--DSKDPDSLQNLLISQLPSWQHMGPADSGKLAILESLLEALIERREKVVIVSY 580
Query: 445 YIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKAC 504
+ + L +I H +N++ +DG + R + N+PSS I L S KA
Sbjct: 581 FSKTLDMIAGLCEH-YNYK----FCRLDGATPSQDRGKLVATFNNPSSDIFIFLLSAKAG 635
Query: 505 CEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQA 564
G+NLVGASR+VL D WNP + QA+SR +R GQ R V +Y LIT+ ++E +RQ
Sbjct: 636 GIGLNLVGASRLVLFDNDWNPASDLQAMSRIWRDGQTRNVFIYRLITAFSIEEKIFQRQI 695
Query: 565 RKVWWSNMV 573
K S V
Sbjct: 696 SKTSLSGSV 704
>gi|440907311|gb|ELR57471.1| DNA repair and recombination protein RAD54-like protein, partial
[Bos grunniens mutus]
Length = 749
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 141/540 (26%), Positives = 238/540 (44%), Gaps = 79/540 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W E S G +GCI++ G GKT + +
Sbjct: 152 KVLRPHQREGVKFLW----------ECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 201
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 202 LRQSPDCKPEIDKAVVVSPSSLVRNWYNEVGKW-------------LGGRIQPLAI---D 245
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 246 GGSKDEIDQKLEGFMNQRGARVPSPILIISYETFRLHVGVLQKGSV-----GLVICDEGH 300
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T +E
Sbjct: 301 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGT----AQE 353
Query: 303 ISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ A+ D +E+L+EL + + +L + LP VV
Sbjct: 354 FKKHFELPILKGRDAAASEEDRRVGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVV 413
Query: 359 ILQPDEFQ----KRLCKAVEGVKSFVE---------LNYCVSLLSVHPSLLPQQFFE--- 402
+ Q KR + + + E + L HP+L+ + E
Sbjct: 414 CCRLTPLQIELYKRFLRQAKPAEELREGKMSVSSLSSITSLKKLCNHPALIYDKCVEEED 473
Query: 403 ----SFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQ 455
+ D+ L+P+ K L +L ++ +++KV++ S Y + L L +
Sbjct: 474 GFEGTLDIFPPGYNSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKL 533
Query: 456 LRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
R R LY +DG +KKR + N+PSS + + S+KA G+NL+GA
Sbjct: 534 CRAR-------RYLYVRLDGTMSIKKRAKVVERFNNPSSPDFVFMLSSKAGGCGLNLIGA 586
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 587 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 646
>gi|281209956|gb|EFA84124.1| SNF2-related domain-containing protein [Polysphondylium pallidum
PN500]
Length = 1905
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 158/564 (28%), Positives = 258/564 (45%), Gaps = 106/564 (18%)
Query: 53 HAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAP 112
+ Q + +V + K + PHQR G +F++ + G GNGCI++
Sbjct: 845 NGQRVTYVVVDPFISKHLRPHQRRGVQFLYDCVTG----------QRHQFGNGCILADQM 894
Query: 113 GTGKTGLTLVFLQAYMKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKP 167
G GKT +TL L +K P +P +I+ P ++ W+ E K+W
Sbjct: 895 GLGKTVMTLTTLWTLLKQSPTGQPTCKKAIIVTPAGLVGNWKREIKRWF----------- 943
Query: 168 ELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDE 224
G E L D+ + ++ ++ ++ +L +SY R+F
Sbjct: 944 ---GAERLKPFTLNDSVSKNTKQM-----LEDFNTSTVNPVLIISYDQCRIF-------- 987
Query: 225 LSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELEN--- 280
S IL + G+ V DEGH +N ++ ++++ IKT+ +IILSGTP QN+ E +
Sbjct: 988 -SSILCTMSCGVLVCDEGHRLKNMESQTTQSIASIKTKAKIILSGTPIQNDLIEFYSMVD 1046
Query: 281 --------TLSLVRQEFGE-VLRTVRKSGRE-ISKAKHASLISSIGRCANHRDDEKLKEL 330
TLS ++++ ++R S +E I+KA S I+S
Sbjct: 1047 FCNPGSLGTLSQFKKDYANPIIRGREDSTKEGIAKAMQLSKITS---------------- 1090
Query: 331 KEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV---EGVKSFVE-----L 382
F+ K VL+E LP VV + EFQK+L +AV GV S + L
Sbjct: 1091 -----SFILRRKSNVLEEYLPTKTIHVVFCRLSEFQKKLYRAVLDNNGVDSIIAGKQNAL 1145
Query: 383 NYCVSL--LSVHPSLLPQQFFESFDVDSAKLAR-LKLDPEAGIKTRF---LLILLELSTN 436
+L L +PSL+ + + DS D K F LLI L+ +
Sbjct: 1146 TTMTTLKQLCNYPSLIKSDDYSKYFTDSNDTTTPTDFDASQSGKMEFVEQLLITLKSLGD 1205
Query: 437 EKVLV--FSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
VLV ++Q ++ L++++L + ++R +DG+ +RQ ++ NDPS++
Sbjct: 1206 RAVLVSNYTQTLDVFELLLKKLSIQ-SYR-------IDGQVKATERQDRVDKFNDPSNKT 1257
Query: 495 R-IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553
+ L S+KA G+NL+GA+ +VL D WNP ++ QA+ R +R GQ + V +Y L+T+
Sbjct: 1258 HTVFLLSSKAGGVGLNLIGANHIVLYDPDWNPAIDIQAMERVWREGQTKPVSIYRLLTAG 1317
Query: 554 TLEWDKLRRQARKVWWSNMVFPSS 577
T+E +RQ K SN V S
Sbjct: 1318 TIEEKIHQRQIIKESLSNSVVDKS 1341
>gi|315053993|ref|XP_003176371.1| DNA repair and recombination protein RAD54 [Arthroderma gypseum CBS
118893]
gi|311338217|gb|EFQ97419.1| DNA repair and recombination protein RAD54 [Arthroderma gypseum CBS
118893]
Length = 831
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 153/559 (27%), Positives = 239/559 (42%), Gaps = 95/559 (16%)
Query: 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLV 122
PR + K + PHQ EG +F+++ G +D KN+ NGCI++ G GKT +
Sbjct: 232 PR-LAKILRPHQIEGVKFLYRCTTGLVD----KNA------NGCIMADGMGLGKTLQCIT 280
Query: 123 FLQAYMKLHPRC------RPVIIAPRSMLLTWEEEFKKW-GIDIPFYNLNKPELSGKENN 175
+ +K P + VI P +++ W E KW G D +N + GK +
Sbjct: 281 LMWTLLKQSPEAGKPTVQKAVIACPATLVGNWANELVKWLGKDA----INPFVIDGKAS- 335
Query: 176 GAVALMDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLSYRLFEKLVSGDELSGIL 229
K LI +L W + +G +L +SY ++ DEL
Sbjct: 336 --------------KAELIS--QLRQWAIASGRSVVRPVLIVSYETLR--MNSDELRDTQ 377
Query: 230 LDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV---- 285
+ GL + DEGH +N D+ + AL+++ ++R+ILSGTP QN+ E + L
Sbjct: 378 I---GLLLCDEGHRLKNADSQTYVALNKLNVQKRVILSGTPIQNDLSEYFSLLDFANPGI 434
Query: 286 ---RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHK 342
R EF + GR+ + +E+L EL + F+
Sbjct: 435 LGSRSEFHKTYEIPILRGRDADGTDE----------QQQKGNERLAELLNLVNKFIIRRS 484
Query: 343 GTVLQESLPGLRHSVVILQPDEFQKRLCKAV---EGVKSFVELNYCVSLLSV-------- 391
+L + LP VV FQ L +KS + L ++
Sbjct: 485 NDLLSKYLPVKYEHVVFCNLAPFQLDLYNHFIQSPEIKSLLRGKGSQPLKAIGILKKLCN 544
Query: 392 HPSLLP---------QQFFESFDVDSAKLARLKLDPEAGIKTRFL---LILLELSTNEKV 439
HP LL Q F E V + + ++ K L L + TN+K+
Sbjct: 545 HPDLLKLSEDLPGCEQYFPEDMTVSNGRRGDREVKSWYSGKMMVLDRMLARIRQDTNDKI 604
Query: 440 LVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
++ S Y + L L R R + +DG VKKR ++ NDP+ + + L
Sbjct: 605 VLISNYTQTLDLFERLCRAR-----AYGCIRLDGTMGVKKRSKLVDKFNDPNGEEFVFLL 659
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
S+KA GINLVGA+R+VL D WNP ++QA++R +R GQ + VY I + T+E
Sbjct: 660 SSKAGGCGINLVGANRLVLFDPDWNPAADQQALARVWRDGQSKDCFVYRFIATGTIEEKI 719
Query: 560 LRRQARKVWWSNMVFPSSD 578
+RQ+ K S+ V S++
Sbjct: 720 FQRQSHKQSLSSCVVDSAE 738
>gi|195539537|ref|NP_001124238.1| DNA repair and recombination protein RAD54-like [Bos taurus]
gi|119935983|gb|ABM06051.1| RAD54-like protein [Bos taurus]
gi|296488837|tpg|DAA30950.1| TPA: RAD54-like [Bos taurus]
Length = 749
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 141/540 (26%), Positives = 238/540 (44%), Gaps = 79/540 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W E S G +GCI++ G GKT + +
Sbjct: 152 KVLRPHQREGVKFLW----------ECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 201
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 202 LRQSPDCKPEIDKAVVVSPSSLVRNWYNEVGKW-------------LGGRIQPLAI---D 245
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 246 GGSKDEIDQKLEGFMNQRGARVPSPILIISYETFRLHVGVLQKGSV-----GLVICDEGH 300
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T +E
Sbjct: 301 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGT----AQE 353
Query: 303 ISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ A+ D +E+L+EL + + +L + LP VV
Sbjct: 354 FKKHFELPILKGRDAAASEEDRRVGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVV 413
Query: 359 ILQPDEFQ----KRLCKAVEGVKSFVE---------LNYCVSLLSVHPSLLPQQFFE--- 402
+ Q KR + + + E + L HP+L+ + E
Sbjct: 414 CCRLTPLQIELYKRFLRQAKPAEELREGKMSVSSLSSITSLKKLCNHPALIYDKCVEEED 473
Query: 403 ----SFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQ 455
+ D+ L+P+ K L +L ++ +++KV++ S Y + L L +
Sbjct: 474 GFEGTLDIFPPGYNSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKL 533
Query: 456 LRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
R R LY +DG +KKR + N+PSS + + S+KA G+NL+GA
Sbjct: 534 CRAR-------RYLYVRLDGTMSIKKRAKVVERFNNPSSPDFVFMLSSKAGGCGLNLIGA 586
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 587 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 646
>gi|348553527|ref|XP_003462578.1| PREDICTED: DNA repair and recombination protein RAD54 [Cavia
porcellus]
Length = 750
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 139/536 (25%), Positives = 236/536 (44%), Gaps = 71/536 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W+ + S G +GCI++ G GKT + +
Sbjct: 153 KVLRPHQREGVKFLWECV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 202
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 203 LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 246
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 247 GGSKDEIDQKLEGFMNQRGARVPSPILIISYETFRLHVGVLQKGSV-----GLVICDEGH 301
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T ++ +
Sbjct: 302 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGTAQEFKKH 358
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQP 362
S ++ +E+L+EL + + +L + LP VV +
Sbjct: 359 FELPILKSRDANASEADRQLGEERLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCRL 418
Query: 363 DEFQKRLCKA-VEGVKSFVELN------------YCVSLLSVHPSLLPQQFFE------- 402
Q L K + K EL + L HP L+ + E
Sbjct: 419 TSLQTELYKKFLRQAKPAEELREGKMSVSSLSSITSLKKLCNHPGLIYDKCVEEEDGFEG 478
Query: 403 SFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQLRHR 459
+ D+ + L+P+ K L +L ++ +++KV++ S Y + L L + R R
Sbjct: 479 ALDIFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRAR 538
Query: 460 FNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
LY +DG +KKR + N PSS + + S+KA G+NL+GA+R+V
Sbjct: 539 -------RYLYVRLDGTMSIKKRAKIVERFNSPSSPEFVFMLSSKAGGCGLNLIGANRLV 591
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 592 MFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 647
>gi|380024032|ref|XP_003695811.1| PREDICTED: DNA repair and recombination protein RAD54-like [Apis
florea]
Length = 716
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 149/543 (27%), Positives = 244/543 (44%), Gaps = 91/543 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F+++ + G G GCI++ G GKT + L +K
Sbjct: 128 PHQREGVKFMYECVTG----------KRIEGAYGCIMADEMGLGKTLQCITLLWTLLKQG 177
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P +P +I+AP S++ W E KW N +P +D +
Sbjct: 178 PEAKPLIDKAIIVAPSSLVKNWYNEIFKW-----LKNRIQP-----------LAIDGGNK 221
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDEGHT 243
LI ++K Y K IL +SY RL ++ DE+ GL + DEGH
Sbjct: 222 TDIDTKLIGFMKTYGRKCVNPILIISYETFRLHAHILHQDEV--------GLILCDEGHR 273
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR-E 302
+N + ++AL +K +RRI+LSGTP QN+ E + + V Q + RK
Sbjct: 274 LKNSENQTYQALINLKAKRRILLSGTPIQNDLLEYFSLVHFVNQGLLGTAQEFRKKFEIP 333
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI--- 359
I + + A+ + + A E+LKEL + + +L + LP L++ +V+
Sbjct: 334 ILRGQDAAATDTERKLAQ----ERLKELVAIVNKCLIRRTSALLSKYLP-LKYELVVCIK 388
Query: 360 ------------LQPDEFQKRLCKAVEGVK-----SFVELNYCVSL--LSVHPSLLPQQF 400
+Q D +K + + +E K S L+ L L HP L+ ++
Sbjct: 389 MGKVQTDLYKNFIQSDSIKKSMEENLENCKKGKRESLSTLSAITLLKKLCNHPDLVYEKI 448
Query: 401 FESFD--VDSAKL-----ARLKLDPEAGIKTRFLLILL---ELSTNEKVLVFSQYIEPLT 450
E D ++AKL + ++ PE K L LL + +TN+K+++ S Y + L
Sbjct: 449 LEKSDGFENAAKLMPSNYSTKEILPELSGKLMVLDCLLASIKTTTNDKIVLVSNYTQTLD 508
Query: 451 LIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINL 510
L + ++ + +DG +KKR + ND +S I + S+KA G+NL
Sbjct: 509 LF-----EKLCYKRCYNYVRLDGTMTIKKRSKVVERFNDSNSNDFIFMLSSKAGGCGLNL 563
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS 570
+GA+R+++ D WNP + QA++R +R GQK+ + T+E +RQA K S
Sbjct: 564 IGANRLIMFDPDWNPANDDQAMARVWRDGQKKPCF------TGTIEEKIFQRQAHKKALS 617
Query: 571 NMV 573
+ V
Sbjct: 618 STV 620
>gi|322701898|gb|EFY93646.1| recombinational repair protein [Metarhizium acridum CQMa 102]
Length = 819
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 151/565 (26%), Positives = 237/565 (41%), Gaps = 84/565 (14%)
Query: 52 THAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHA 111
T Q V ++ + K + PHQ EG +F+++ + G I+ NGCI++
Sbjct: 154 TKEQSQVPVVLDPKLAKILRPHQVEGVKFMYRCVTGMIE----------EKANGCIMADE 203
Query: 112 PGTGKTGLTLVFLQAYMKLHPRC------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLN 165
G GKT + + +K P + +++ P S++ W E KW
Sbjct: 204 MGLGKTLQCITLMWTLLKQSPEAGKPTIQKAIVVCPASLVKNWANELTKWL--------- 254
Query: 166 KPELSGKENNGAVALMDNRKRGRG-KVGLIRYVKLYSWKMGTG------ILGLSYRLFEK 218
GA A+ G+ K L R +L W + +G ++ +SY
Sbjct: 255 ----------GANAITPFAIDGKASKEELTR--QLRQWAIASGRSVTRPVIIVSYETLR- 301
Query: 219 LVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
++ +EL + GL DEGH +N D+ F AL+ + RR+IL+GTP QN+ E
Sbjct: 302 -LNVEELKHTKI---GLLFCDEGHRLKNSDSNTFNALNSLDVSRRVILTGTPIQNDLTEY 357
Query: 279 ENTLSLVRQE-FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPF 337
+ S + G L ++ I + + A S R DE EL + F
Sbjct: 358 FSLTSFANPDLLGSRLEFRKRFEIPILRGRDADASES----DRQRGDECTAELLGIVNKF 413
Query: 338 VNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV------------EGVKSFVELNYC 385
+ +L + LP VV FQ L +G + +N
Sbjct: 414 LIRRTNDILSKYLPVKYEHVVFCSISPFQASLYNYFITSPDIQALLRGKGSQPLKAINIL 473
Query: 386 VSLLSVHPSLLPQQ---------FFESFDVDSAKLARLKLDPEAGIKTRFL---LILLEL 433
L + HP LL F + A+ + PE K L L +
Sbjct: 474 KKLCN-HPDLLNLSDDLPGSECCFPPEYTPKEARGRDRDVRPEYSGKMMVLDRMLARIRQ 532
Query: 434 STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQ 493
TN+K+++ S Y L L R R L +DG +V KRQ ++ NDP+ +
Sbjct: 533 DTNDKIVLISNYTSTLDLFERLCRSR-----QYGCLRLDGTMNVNKRQKLVDRFNDPNGE 587
Query: 494 ARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553
+ L S+KA GINL+GA+R+VL D WNP ++QA++R +R GQK+ VY I +
Sbjct: 588 EFVFLLSSKAGGCGINLIGANRLVLFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATG 647
Query: 554 TLEWDKLRRQARKVWWSNMVFPSSD 578
T+E +RQ+ K S+ V S++
Sbjct: 648 TIEEKIFQRQSHKQSLSSCVVDSAE 672
>gi|432111345|gb|ELK34622.1| DNA repair and recombination protein RAD54-like protein [Myotis
davidii]
Length = 747
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 140/536 (26%), Positives = 241/536 (44%), Gaps = 71/536 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W + S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVKFLWDCV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 201 LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 244
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F +L +G G + GL + DEGH
Sbjct: 245 GGSKDEIDQKLEGFMNQRGARVPSPILIISYETF-RLHAGVLRKGSV----GLVICDEGH 299
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T + +
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGTAHEFKKH 356
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI--- 359
++ +E+L+EL + + +L + LP VV
Sbjct: 357 FELPILKGRDAAASEAERQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRL 416
Query: 360 --LQPDEFQK--RLCKAVEGVKS------FVELNYCVSLLSVHPSLLPQQFFE------- 402
LQ + +Q+ R K E ++ + + L HP+L+ + E
Sbjct: 417 TPLQTELYQRFLRQAKPAEELREGKMSVSSLSSITSLKKLCNHPALIYDKCVEEEDGFEG 476
Query: 403 SFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQLRHR 459
+ D+ + L+P+ K L +L ++ +++KV++ S Y + L L + R R
Sbjct: 477 ALDIFPPGYSSKVLEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRAR 536
Query: 460 FNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
LY +DG +KKR + N PSS + + S+KA G+NL+GA+R+V
Sbjct: 537 -------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLV 589
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 590 MFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
>gi|296207850|ref|XP_002750833.1| PREDICTED: DNA repair and recombination protein RAD54-like
[Callithrix jacchus]
Length = 746
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 142/540 (26%), Positives = 240/540 (44%), Gaps = 79/540 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W+ + S G +GCI++ G GKT + +
Sbjct: 150 KVLRPHQREGVKFLWECV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 199
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 200 LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 243
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 244 GGSKDDIDQKLEGFMNQRGARVPSPILIISYETFRLHVGVLQKGSV-----GLVICDEGH 298
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T +E
Sbjct: 299 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGT----AQE 351
Query: 303 ISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ A+ D +E+L+EL + + +L + LP VV
Sbjct: 352 FKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVV 411
Query: 359 I--LQP--DEFQKRLCKAVEGVKSFVE---------LNYCVSLLSVHPSLLPQQFFE--- 402
L P E KR + + + E + L HP+L+ + E
Sbjct: 412 CCRLTPLQTELYKRFLRQAKPAEELHEGKMSVSSLSSITSLKKLCNHPALIHDKCVEGED 471
Query: 403 ----SFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQ 455
+ D+ + L+P+ K L +L ++ +++KV++ S Y + L L +
Sbjct: 472 GFEGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRSCSSDKVVLVSNYTQTLDLFEKL 531
Query: 456 LRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
R R LY +DG +KKR + N PSS + + S+KA G+NL+GA
Sbjct: 532 CRAR-------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGA 584
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 585 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 644
>gi|443894835|dbj|GAC72182.1| DNA repair protein [Pseudozyma antarctica T-34]
Length = 865
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 144/535 (26%), Positives = 238/535 (44%), Gaps = 70/535 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ EG +F+++ G + ++N+ GCI++ G GKT + +
Sbjct: 279 KVLRPHQVEGVKFLYRCTTGLV----VENAY------GCIMADEMGLGKTLQCIALMWTL 328
Query: 128 MKLHPRCRP------VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
+K P + +I+ P S++ W E KW G + G +AL
Sbjct: 329 LKQSPIAKKSTIDKCIIVCPSSLVRNWANELTKW--------------LGAKAPGTLALD 374
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
+ R+ + ++ +SY L +EL + GL + DEG
Sbjct: 375 GKLSKDEMIEATRRWCNASGRAITQPVMIVSYETLRNL--QEELGNTEV---GLLLCDEG 429
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKSG 300
H +N D+ F+AL++IK RRR+ILSGTP QN+ E L+ E G + +
Sbjct: 430 HRLKNADSLTFQALTQIKVRRRVILSGTPIQNDLSEYFALLNFANPELLGSRVEFRKNFE 489
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
I K + A + AN EKL +L ++ F+ +L + LP VV
Sbjct: 490 IAILKGRDAEATEKQQQEAN----EKLSQLSALVSRFIIRRTNDLLSKYLPVKYEHVVFC 545
Query: 361 QPDEFQ-------------KRLC--------KAVEGVKSFVELNYCVSLLSVHPSLLPQQ 399
+ FQ K+L KA+ +K N+ L + +Q
Sbjct: 546 KMAPFQLDLYRLFIRSPEIKKLLRGTGSQPLKAIGILKKLC--NHPDLLDLPNDLDGSEQ 603
Query: 400 FF-ESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRH 458
+F E + + +L + + RFL + +TN+K+++ S Y + L + E++
Sbjct: 604 YFPEGYTPRDRRYVNPELSGKMMVLQRFLETI-RATTNDKIVLISNYTQTLD-VFERMCR 661
Query: 459 RFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVL 518
W + +DG + KRQ ++ NDP + I L S+KA G+NL+GA+R+VL
Sbjct: 662 ANRW----GMFRLDGTMTINKRQKLVDRFNDPEGKEFIFLLSSKAGGCGLNLIGANRLVL 717
Query: 519 LDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
D WNP ++QA++R +R GQK+ VY I + ++E L+RQ+ K S+ V
Sbjct: 718 FDPDWNPASDQQALARVWRDGQKKSCFVYRFIATGSIEEKILQRQSHKQSLSSCV 772
>gi|403291754|ref|XP_003936932.1| PREDICTED: DNA repair and recombination protein RAD54-like [Saimiri
boliviensis boliviensis]
Length = 747
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 142/540 (26%), Positives = 240/540 (44%), Gaps = 79/540 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W+ + S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVKFLWECV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 201 LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 244
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 245 GGSKDEIDQKLEGFMNQRGARVPSPILIISYETFRLHVGVLQKGSV-----GLVICDEGH 299
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T +E
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGT----AQE 352
Query: 303 ISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ A+ D +E+L+EL + + +L + LP VV
Sbjct: 353 FKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVV 412
Query: 359 I--LQP--DEFQKRLCKAVEGVKSFVE---------LNYCVSLLSVHPSLLPQQFFE--- 402
L P E KR + + + E + L HP+L+ + E
Sbjct: 413 CCRLTPLQTELYKRFLRQAKPAEELHEGKMSVSSLSSITSLKKLCNHPALIYDKCVEQED 472
Query: 403 ----SFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQ 455
+ D+ + L+P+ K L +L ++ +++KV++ S Y + L L +
Sbjct: 473 GFEGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKL 532
Query: 456 LRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
R R LY +DG +KKR + N PSS + + S+KA G+NL+GA
Sbjct: 533 CRAR-------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGA 585
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 586 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
>gi|324507205|gb|ADY43057.1| DNA repair and recombination protein RAD54-like protein, partial
[Ascaris suum]
Length = 755
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 142/545 (26%), Positives = 245/545 (44%), Gaps = 95/545 (17%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F++ G ++N+ GCI++ G GKT + L ++
Sbjct: 165 PHQREGVKFMYDCTTGM----RIENAY------GCIMADEMGLGKTLQCITLLWTLLRQS 214
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P +P VI+ P S++ W++E KW L G+ N+ +
Sbjct: 215 PDAKPMISKVVIVCPSSLVKNWDKEIAKW-------------LGGRVNSLPID------- 254
Query: 187 GRGKVGLIRYVKLYSWKMG----TGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
GK + R ++ + +MG T +L +SY F +L GL + DEGH
Sbjct: 255 SGGKEEIDRNLESFLSQMGSRCSTPVLIISYETFRL-----HAEVLLRKEVGLVICDEGH 309
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR-------QEFGEVLRT 295
+N D ++ALS +K RR+++SGTP QN+ E + ++ V QEF
Sbjct: 310 RLKNSDNQTYQALSGLKCERRVLISGTPIQNDLLEYYSLVNFVNPGLLGTAQEFKRRFEN 369
Query: 296 VRKSGREI--SKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGL 353
V GR+ + A+ A + DE L E+ + + ++L + LP
Sbjct: 370 VILRGRDADATDAQRA------------KGDEALAEMASIVNKCIIRRTSSLLTKYLPVK 417
Query: 354 RHSVVILQPDEFQKRLCKAVEGVKSFVE-------------LNYCVSL--LSVHPSLL-- 396
+V + + Q++L + + K E L++ +L L HP L+
Sbjct: 418 YELIVCCKLTDLQEKLYQKLISSKRLKEDTSRSDGKITGTALSFITNLKKLCNHPQLVYD 477
Query: 397 -----PQQFFESFDVDSAKLARLKLDPEAGIKTR---FLLILLELSTNEKVLVFSQYIEP 448
+ F ++ + + +P K + +LL + + +TN+K ++ S Y +
Sbjct: 478 KCQKNEEGFQGCLELFPSGFSDKTFEPAFSGKMKVLDYLLAVTKQTTNDKFVLVSNYTQT 537
Query: 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGI 508
+ +E + R R G + +DG +K+R + NDP+S + L S+KA G+
Sbjct: 538 IDSFVELCKLR---RYG--YVRLDGSSSIKQRAKIVEKFNDPTSSEYVFLLSSKAGGCGL 592
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NL+GA+R+V+ D WNP + QA++R +R GQK+ +Y L+ + T+E +RQ K
Sbjct: 593 NLIGANRLVMFDPDWNPANDDQAMARIWRDGQKKHCFIYRLLATGTIEEKMFQRQTHKKA 652
Query: 569 WSNMV 573
S+ V
Sbjct: 653 LSSCV 657
>gi|328779113|ref|XP_392959.4| PREDICTED: Rad54 protein isoform 1 [Apis mellifera]
Length = 741
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 145/542 (26%), Positives = 240/542 (44%), Gaps = 89/542 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F+++ + G G GCI++ G GKT + L +K
Sbjct: 153 PHQREGVKFMYECVTG----------KRIEGAYGCIMADEMGLGKTLQCITLLWTLLKQG 202
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P +P +I+AP S++ W E KW N +P +D +
Sbjct: 203 PEAKPLIDKAIIVAPSSLVKNWYNEIFKW-----LKNRIQP-----------LAIDGGNK 246
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDEGHT 243
LI ++K Y K IL +SY RL ++ DE+ GL + DEGH
Sbjct: 247 ADIDTKLIGFMKTYGRKCVNPILIISYETFRLHAHILHQDEV--------GLILCDEGHR 298
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK----- 298
+N + ++AL +K +RR++LSGTP QN+ E + + V Q + RK
Sbjct: 299 LKNSENQTYQALINLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGLLGTAQEFRKKFEIP 358
Query: 299 -----------SGREISKAKHASLISSIGRCANHRDDEKL-KELKEKIAPFVNVHKGTVL 346
+ R++++ + LI+ + +C R L K L K V + G +
Sbjct: 359 ILRGQDAAATDAERKLAQERLKELITIVNKCLIRRTSALLSKYLPLKYELVVCIKMGKIQ 418
Query: 347 QESLPGLRHSVVILQ-----PDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFF 401
+ S I + P+ F+K +++ + + L L HP L+ ++
Sbjct: 419 TDLYKNFIQSDSIKKSMEENPENFKKGKRESLSTLSAITLLKK----LCNHPDLVYEKIL 474
Query: 402 ESFD--VDSAKL-----ARLKLDPEAGIKTRFLLILL---ELSTNEKVLVFSQYIEPLTL 451
E D ++AKL + ++ PE K L LL + +TN+K+++ S Y + L L
Sbjct: 475 EKSDGFENAAKLIPSNYSTKEILPELSGKLMVLDCLLASIKTTTNDKIVLVSNYTQTLDL 534
Query: 452 IMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLV 511
+ ++ + +DG +KKR + ND +S I + S+KA G+NL+
Sbjct: 535 F-----EKLCYKRCYNYVRLDGTMTIKKRSKVVERFNDSNSNDFIFMLSSKAGGCGLNLI 589
Query: 512 GASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSN 571
GA+R+V+ D WNP + QA++R +R GQK+ + T+E +RQA K S+
Sbjct: 590 GANRLVMFDPDWNPANDDQAMARVWRDGQKKPCF------TGTIEEKIFQRQAHKKALSS 643
Query: 572 MV 573
V
Sbjct: 644 TV 645
>gi|449299733|gb|EMC95746.1| hypothetical protein BAUCODRAFT_501788 [Baudoinia compniacensis
UAMH 10762]
Length = 813
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 148/560 (26%), Positives = 240/560 (42%), Gaps = 97/560 (17%)
Query: 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLV 122
PR + K + PHQ EG +F+++ G ID GCI++ G GKT +
Sbjct: 215 PR-IAKVLRPHQVEGVKFLYRCTTGLID----------DNAQGCIMADEMGLGKTLQCIT 263
Query: 123 FLQAYMKLHPRC------RPVIIAPRSMLLTWEEEFKKW-GIDIPFYNLNKPELSGKENN 175
+ +K P + VI P S++ W E KW G D +N + GK +
Sbjct: 264 LMWTLLKQSPDAGKGTIQKCVIACPSSLVRNWANELVKWLGQDA----INPFAVDGKASK 319
Query: 176 GAVALMDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLSYRLFEKLVSGDELSGIL 229
+ + ++ W TG +L +SY V EL
Sbjct: 320 EELTM-----------------QMRQWAAATGRAVIRPVLIVSYETLRLYVQ--ELGNTP 360
Query: 230 LDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV---- 285
+ GL + DEGH +N ++ F+AL+ + ++R+ILSGTP QN+ E L+
Sbjct: 361 I---GLMLCDEGHRLKNGESQTFEALNALNVKKRVILSGTPIQNDLSEYFALLNFANPGY 417
Query: 286 ---RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHK 342
RQ+F + GR+ + H R +E+L EL K+ F+
Sbjct: 418 LGTRQDFRKQYEIPILRGRDAGASDHDM----------QRGNERLSELLVKVNKFIIRRT 467
Query: 343 GTVLQESLPGLRHSVVILQPDEFQKRL----CKAVEGVKSFVELNYCVSLLSV------- 391
+L + LP VV FQ L K+ E ++S + L ++
Sbjct: 468 NDILSKYLPVKYEHVVFCNLAPFQLDLYNYFVKSPE-IQSLLRGKGSQPLKAIGLLKKLC 526
Query: 392 -HPSLL---------PQQFFESFDVDSAKLARLKLDPEAGIKTRFL---LILLELSTNEK 438
HP LL + F + ++ + +++P K + L L + T +K
Sbjct: 527 NHPDLLNLPDDLPGCDELFPKEYETKDNRGRNREVNPSYSGKMQVLDRMLRSIRHETTDK 586
Query: 439 VLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498
+++ S Y + L + R L +DG +V KRQ ++ NDP + + L
Sbjct: 587 IVLISNYTQTLDVF-----ERLCRSNSYGCLRLDGTMNVSKRQKLVDKFNDPEGKEFVFL 641
Query: 499 ASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWD 558
S+KA G+NL+GA+R+VL D WNP ++QA++R +R GQK+ VY I + T+E
Sbjct: 642 LSSKAGGCGLNLIGANRLVLFDPDWNPASDQQALARVWRDGQKKDCFVYRFIATGTIEEK 701
Query: 559 KLRRQARKVWWSNMVFPSSD 578
+RQ+ K S+ V S++
Sbjct: 702 VFQRQSHKQSLSSCVVDSAE 721
>gi|378730751|gb|EHY57210.1| DNA repair and recombination protein RAD54B [Exophiala dermatitidis
NIH/UT8656]
Length = 970
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 158/569 (27%), Positives = 249/569 (43%), Gaps = 91/569 (15%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ+EG +F+++ + G L E GG GCI++ G GKT T+ L
Sbjct: 285 KLLRPHQKEGVQFLYECVMG---LREY-------GGQGCILADDMGLGKTLTTIALLWTL 334
Query: 128 MKLHP--RCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
++ P R PVI + P S++ W+ EF+KW G + G +
Sbjct: 335 LRQSPVHRGPPVIRKALIVCPVSLIRNWKREFRKW--------------LGSDRLGVLEF 380
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
D R G + V + + RL ++V+ D G +D+ + DE
Sbjct: 381 EDQSTHVRDFDGRVYQVMIIGYD----------RL--RMVADDLAQGHPIDI---VICDE 425
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGEVLRTVRKS 299
GH + +A+ + TRRRIILSGTP QN+ E ++ V G +R
Sbjct: 426 GHRLKTMKNKNAQAIESLNTRRRIILSGTPIQNDLGEFYAMVNFVNDGCLGSQKGFIRDF 485
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI 359
+ I +++ +S RD + EL +PF+ +L + LP V+
Sbjct: 486 EKPIIRSRQPD--ASEEEIERGRDASE--ELARTTSPFILRRTADILSDFLPPKTEYVLF 541
Query: 360 LQPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSA 409
+P + Q ++ + A+ +S +L + L P+L+ ++ S+
Sbjct: 542 CKPTQAQTKIYRNILKSAMFHSALRSSESAFQLITILKKLCNSPALMNPKYGNEDSTPSS 601
Query: 410 KLARL-KLDPEA---------GIKTRFLLILLE---LSTNEKVLVFSQYIEPLTLIMEQL 456
L L ++ PE K R L LL+ +TNEKV++ S Y L LI EQL
Sbjct: 602 SLTTLNEMLPEGLSKLYHNSLSCKIRLLDELLQQIRANTNEKVVLISNYTSTLNLI-EQL 660
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDP-SSQARIMLASTKACCEGINLVGASR 515
N L +DG KKRQ ++ N+ S+Q+ L S KA G+NL+GASR
Sbjct: 661 LVNSNL----PYLRLDGSIAAKKRQGLVDQFNNSKSTQSFAFLLSAKAGGVGLNLIGASR 716
Query: 516 VVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVF- 574
++L DV WNP + QA++R +R GQKR +Y + +E +RQ K ++ +
Sbjct: 717 LILFDVDWNPATDDQAVARIHRQGQKRHCKIYRFLIKGGIEERIWQRQVVKRALASSIMQ 776
Query: 575 ----------PSSDGGGNDQTTASEPLED 593
SS GG T + + L+D
Sbjct: 777 GGSAASSGLAKSSGKGGQITTFSQDELKD 805
>gi|281209483|gb|EFA83651.1| SNF2-related domain-containing protein [Polysphondylium pallidum
PN500]
Length = 934
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 147/551 (26%), Positives = 245/551 (44%), Gaps = 108/551 (19%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT----GLTLVFL 124
K+ PHQR G +F++ + G L K+ GNGCI++ G GKT + L
Sbjct: 299 KLRPHQRVGIQFMFDCLLG---LGGFKD------GNGCILADDMGLGKTIQAISIMWTLL 349
Query: 125 QAYMKLHPRC-RPVIIAPRSMLLTWEEEFKKW-GIDIPFYNLNKPELSGKENNGAVALMD 182
+ ++ P C R +I+AP ++ W +E KKW G I ++ K +G+ A +
Sbjct: 350 KQGIRGEPTCQRAIIVAPTGLVGNWVKELKKWLGEGIKSIHIGKSTPTGR------AKLA 403
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ G V +I Y +L W I L I +D+ GL + DEGH
Sbjct: 404 QLETGDADVLVISYDQLKIW-----INDL----------------IKIDMIGLVICDEGH 442
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N +T +A++ + T+RR+ILSGTP QNN E ++ V V KS
Sbjct: 443 RLKNAETKSTQAVNMLPTKRRVILSGTPIQNNLMEFYAMVNFVNP-------GVLKSVPM 495
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKE----LKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
+ + +++S A + +E L E F+ + + LP V
Sbjct: 496 FNNVYNGPILASRSPDATPEEKRVGRERSLMLTEITGKFILRRTAAINTQYLPKKTEYTV 555
Query: 359 ILQPDEFQK----RLCKAVEG------------VKSFVELNYCVSLLSVHPS-------- 394
+ QK +L + ++G + S +L+ C L+ PS
Sbjct: 556 FCKLSPLQKTIYLKLLEIIKGRGYQTFTGALPLITSLKKLSNCPELVYTPPSAKEDDKEE 615
Query: 395 ------------LLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL---STNEKV 439
L P++F + K+++ P+ K +F+ L++ T ++V
Sbjct: 616 EKAEDVSSVIHGLFPKEF-------NTKVSQ----PQYSGKLQFIDTLMQQIRNKTKDRV 664
Query: 440 LVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
+V S Y + L+++ R G +DG KRQ ++ NDPSS + L
Sbjct: 665 VVISNYTQTLSVLARLCNER-----GYPFFQLDGSTPSDKRQVLVDKFNDPSSPQFVFLL 719
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
S+KA G+NL+GA+ ++L+D WNP + QA++R +R GQK+VV +Y +++ T+E
Sbjct: 720 SSKAGGIGLNLIGANHLILVDPDWNPANDAQAMARVWREGQKKVVSIYRTLSTGTIEEKI 779
Query: 560 LRRQARKVWWS 570
+RQ K+ S
Sbjct: 780 YQRQITKMALS 790
>gi|268566403|ref|XP_002639713.1| C. briggsae CBR-RAD-54 protein [Caenorhabditis briggsae]
Length = 782
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 143/552 (25%), Positives = 246/552 (44%), Gaps = 97/552 (17%)
Query: 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQ 125
V K + PHQR+G +F+W + G +++ E +GCI++ G GKT + L
Sbjct: 163 VGKILRPHQRDGVKFMWDCVTG-VNIPEY---------HGCIMADEMGLGKTLQCISLLW 212
Query: 126 AYMKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
++ P P +I+ P S++ W++E KKW L + N V
Sbjct: 213 TLLRQSPDACPTVSKSIIVCPSSLVKNWDKEIKKW-------------LGTRLNAMPV-- 257
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFV 237
D+ KR L ++ + +L +SY RL+ ++ E+ G+ +
Sbjct: 258 -DSGKRELIIQCLNSFMSDSKMRCAIPVLIISYETFRLYANILHSGEV--------GIVI 308
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQE-----------LENTLSLVR 286
DEGH +N + ++ALS +K RR+++SGTP QN+ E L T S R
Sbjct: 309 CDEGHRLKNSENLTYQALSGLKCARRVLISGTPIQNDLLEYFSLVNFVNPGLLGTASEFR 368
Query: 287 QEFGEVL---RTVRKSGREISKA--KHASLISSIGRCANHRDDEKLKELKEKIAPFVNVH 341
++F + R S + K K ++S + +C R L + +
Sbjct: 369 KKFENAILKGRDADASAEDQKKGEEKTKEMVSLVEKCIIRRTSALLTKYLPVKYEHIICC 428
Query: 342 KGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSL--LSVHPSLLPQQ 399
K + LQE+L L E Q R+ + +G + L++ L L HP L+ ++
Sbjct: 429 KNSTLQETLYNK------LIECEKQNRITEKDKGATASA-LSFITHLKKLCNHPYLVYEE 481
Query: 400 ---------------FFESFDVDSAKLARLKLDPEAGIKTR---FLLILLELSTNEKVLV 441
F E+F+ S DP K + ++L + +T++K ++
Sbjct: 482 LQKPDNRFRTKCLSVFPEAFNPKS-------FDPSFSGKMKVLDYILAVTRKTTDDKFVL 534
Query: 442 FSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAST 501
S Y + + M + R G + + +DG +K+R ++ NDP+S L S+
Sbjct: 535 VSNYTQTIDQFMALCKLR-----GYDFVRLDGSMSIKQRSKIVDTFNDPASTIFCFLLSS 589
Query: 502 KACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561
KA G+NL+GA+R+V+ D WNP + QA++R +R GQK+ +Y L+ + ++E +
Sbjct: 590 KAGGCGLNLIGANRLVMFDPDWNPANDDQAMARVWRDGQKKTCFIYRLLATGSIEEKMFQ 649
Query: 562 RQARKVWWSNMV 573
RQ K S+ V
Sbjct: 650 RQTHKKALSSCV 661
>gi|170580649|ref|XP_001895355.1| recombination factor GdRad54 [Brugia malayi]
gi|158597754|gb|EDP35808.1| recombination factor GdRad54, putative [Brugia malayi]
Length = 865
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 143/537 (26%), Positives = 243/537 (45%), Gaps = 79/537 (14%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F++ + G +GCI++ G GKT + + ++
Sbjct: 254 PHQREGVKFMYDCVTG----------VRIPSAHGCIMADEMGLGKTLQCITLMWTLLRQG 303
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P +P VI+ P S++ W++E +KW L G+ N V D+ +
Sbjct: 304 PDAKPTLNKTVIVCPSSLVKNWDKEIRKW-------------LGGRVNALPV---DSGGK 347
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
L +++ + T +L +SY F S ILL GL + DEGH +
Sbjct: 348 DEIDRNLEKFMSQMGVRCPTPVLIISYETFRLHAS------ILLQKEIGLIICDEGHRLK 401
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKSGREIS 304
N D ++AL +K RR+++SGTP QN+ E + ++ V G R+ I
Sbjct: 402 NSDNQTYQALFGLKCERRVLISGTPIQNDLLEYYSLINFVNPGLLGTASEFKRRFENIIL 461
Query: 305 KAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDE 364
+ + A + + D L E+ ++ + +L + LP ++ + E
Sbjct: 462 RGRDADATDA----QREKGDTALTEMSSIVSKCIIRRTSALLTKYLPVKYELIICCKLTE 517
Query: 365 FQKRLC-------------KAVEGVK-SFVELNYCVSL--LSVHPSLL---PQQFFESFD 405
Q++L K EG K + L++ +L L HP L+ Q+ E F+
Sbjct: 518 LQEKLYRQLISAFSKGGKQKVTEGDKITGTALSFITNLKKLCNHPQLILNKCQKKEEGFE 577
Query: 406 VDSAKLAR----LKLDPEAGIKTR---FLLILLELSTNEKVLVFSQYIEPLTLIME--QL 456
D KL K +P K + +LL +TN+K ++ S Y + + +E QL
Sbjct: 578 -DCLKLFPGEFGKKFEPAFSGKMKVLDYLLAATRATTNDKFVLVSNYTQTIDAFVELCQL 636
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
R R+ + + +DG +K+R + NDP S + L S+KA G+NL+GA+R+
Sbjct: 637 R-RYPY------IRLDGTCTIKQRAKLVEKFNDPESVEYVFLLSSKAGGCGLNLIGANRL 689
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
++ D WNP + QA++R +R GQK+ +Y L+++ ++E +RQA K S+ V
Sbjct: 690 IMFDPDWNPANDDQAMARVWRDGQKKNCFIYRLLSTGSIEEKMFQRQAHKKALSSCV 746
>gi|367011473|ref|XP_003680237.1| hypothetical protein TDEL_0C01370 [Torulaspora delbrueckii]
gi|359747896|emb|CCE91026.1| hypothetical protein TDEL_0C01370 [Torulaspora delbrueckii]
Length = 869
Score = 159 bits (403), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 147/573 (25%), Positives = 250/573 (43%), Gaps = 102/573 (17%)
Query: 68 KKMFPHQREGFEFIWKNIAGGI-----DLDELKNSTS------------TGGGNGCIISH 110
K + PHQ EG F+++ + G + D + +KN ++ G GCI++
Sbjct: 247 KILRPHQVEGVRFLYRCVTGLVMKDFLDQETVKNGSAEVGTEVGKEVVINRGAYGCIMAD 306
Query: 111 APGTGKTGLTLVFLQAYMKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLN 165
A G GKT + + ++ P+ + +I+ P S++ W E KW
Sbjct: 307 AMGLGKTLQCIALMWTLLRQGPQGKKLIDKCIIVCPSSLVNNWANELVKWL--------- 357
Query: 166 KPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGI----LGLSYRLFEKLVS 221
G L G+ + +++++ G I L +SY + V
Sbjct: 358 ----------GPNVLTPLAIDGKKTTSVSESIRVWAQAQGRNIVKPVLIISYETLRRNV- 406
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
++L + GL + DEGH +N D+ F +L I RR+ILSGTP QN+ E
Sbjct: 407 -EQLKNTRV---GLMLADEGHRLKNADSLTFTSLDSIDCPRRVILSGTPIQNDLSEYFAL 462
Query: 282 LSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDD------EKLKELKEKIA 335
L+ RK+ ++ L+S R A+ DD E+L++L ++
Sbjct: 463 LNFSNPGLLGTRSDFRKN------FENPILLS---RDADATDDQIKKGQEQLQKLSYVVS 513
Query: 336 PFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRL----------CKAVEGVKSFVELNYC 385
F+ +L + LP V+ + FQK L K V+G ++ +
Sbjct: 514 KFIIRRANDILAKYLPCKYEHVIFVNLRPFQKDLYERSVKSREITKMVKGNEAGSQPLKA 573
Query: 386 VSLLSV---HPSLLPQQFFESFD------------VDSAKLARLKLDPEAGIKTRFLLIL 430
+ L HP LL F E D + S+ + + + +F ++
Sbjct: 574 IGQLKKLCNHPDLL--NFEEDLDNLDGLNIPDDYEIPSSSNTNFRRNVQTEFSGKFAILE 631
Query: 431 LELST-----NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSIN 485
L T ++K+++ S Y + L LI RH+ L +DG ++ KRQ ++
Sbjct: 632 RFLKTIRSQSDDKIVLISNYTQTLDLIERLCRHKH-----YASLRLDGTMNINKRQKLVD 686
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
NDP Q I L S+KA GINL+GA+R++L+D WNP ++QA++R +R GQK+
Sbjct: 687 RFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQKKDCF 746
Query: 546 VYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
+Y I++ T+E +RQ+ K+ S+ V + +
Sbjct: 747 IYRFISTGTIEEKIYQRQSMKMSLSSCVVDAQE 779
>gi|402854403|ref|XP_003891859.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair and recombination
protein RAD54-like [Papio anubis]
Length = 747
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 141/540 (26%), Positives = 239/540 (44%), Gaps = 79/540 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W+ + S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVKFLWECV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P ++++P S++ W E KW L G+ A+ D
Sbjct: 201 LRQSPECKPEIDKAMVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 244
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 245 GGSKDEIDQKLEGFMNQRGARVPSPILIISYETFRLHVGVLQKGSV-----GLVICDEGH 299
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T E
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGT----AHE 352
Query: 303 ISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ A+ D +E+L+EL + + +L + LP VV
Sbjct: 353 FKKHFELPILKGRDAAASEADRKLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVV 412
Query: 359 I--LQP--DEFQKRLCKAVEGVKSFVE---------LNYCVSLLSVHPSLLPQQ------ 399
L P E KR + + + E + L HP+L+ +
Sbjct: 413 CCRLTPLQTELYKRFLRQAKPAEELREGKMSVSSLSSITSLKKLCNHPALIHDKCVEEED 472
Query: 400 -FFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQ 455
F + D+ + L+P+ K L +L ++ +++KV++ S Y + L L +
Sbjct: 473 GFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRSCSSDKVVLVSNYTQTLDLFEKL 532
Query: 456 LRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
R R LY +DG +KKR + N PSS + + S+KA G+NL+GA
Sbjct: 533 CRAR-------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGA 585
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 586 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
>gi|383848072|ref|XP_003699676.1| PREDICTED: DNA repair and recombination protein RAD54 [Megachile
rotundata]
Length = 760
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 145/541 (26%), Positives = 246/541 (45%), Gaps = 89/541 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F+++ + G G GCI++ G GKT + + +K
Sbjct: 174 PHQREGVKFMYECVTG----------QRIEGAYGCIMADEMGLGKTLQCITLMWTLLKQG 223
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P +P +I+AP S++ W E KW N +P +D +
Sbjct: 224 PEAKPLIEKAIIVAPSSLVKNWYNEIFKW-----LKNRVQP-----------LAIDGGNK 267
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDEGHT 243
L ++K Y + IL +SY RL ++ DE+ GL + DEGH
Sbjct: 268 ADIDAKLTGFMKTYGRRCANPILIISYETFRLHAHVLHQDEV--------GLVLCDEGHR 319
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR-E 302
+N + ++AL +K +RR++LSGTP QN+ E + + V Q + RK
Sbjct: 320 LKNSENQTYQALMNLKAKRRVLLSGTPIQNDLLEYFSLVHFVNQGLLGTAQEFRKKFEIP 379
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI--- 359
I + + A+ + + A E+L EL + + +L + LP L+H +V+
Sbjct: 380 ILRGQDAAATDTERKLAQ----ERLSELVTLVNKCLIRRTSALLSKYLP-LKHELVVCIK 434
Query: 360 ------------LQPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQQFFE 402
+Q D +K + + +G K L+ ++ L HP L+ ++ +
Sbjct: 435 MGKLQTDLYKNFIQSDSIKKSMEENSDGSKKGKSLSALSAITLLKKLCNHPDLVYEKILQ 494
Query: 403 SFD--VDSAKL-----ARLKLDPEAGIKTRFLLILL---ELSTNEKVLVFSQYIEPLTLI 452
D ++AKL + ++ PE K L LL + +T +K+++ S Y + L L
Sbjct: 495 QSDGFENAAKLMPPNYSTKEILPELSGKLMVLDCLLASIKTTTKDKIVLVSNYTQTLDL- 553
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
E+L H+ ++ + +DG +KKR ++ ND +S I + S+KA G+NL+G
Sbjct: 554 FEKLCHKRSY----NYVRLDGTMTIKKRSKVVDKFNDENSNDFIFMLSSKAGGCGLNLIG 609
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNM 572
A+R+V+ D WNP + QA++R +R GQK+ + T+E +RQA K S+
Sbjct: 610 ANRLVMFDPDWNPANDDQAMARVWRDGQKKPCF------TGTIEEKIFQRQAHKKALSST 663
Query: 573 V 573
V
Sbjct: 664 V 664
>gi|157128256|ref|XP_001661368.1| hypothetical protein AaeL_AAEL002341 [Aedes aegypti]
gi|108882255|gb|EAT46480.1| AAEL002341-PA [Aedes aegypti]
Length = 851
Score = 159 bits (402), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 148/538 (27%), Positives = 231/538 (42%), Gaps = 77/538 (14%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAG--GIDLDELKNSTSTGGGNGCIISHAPGTGKTGL 119
VP + K + PHQREG F+++ + G D D G I++ G GKT
Sbjct: 237 VPYALSKHLRPHQREGVSFLYECVLGFRYTDADRF----------GAILADEMGLGKTLQ 286
Query: 120 TLVFLQAYMKLHPRCRPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKEN 174
+ + MK P +P+ I+ P S++ W+ E KW
Sbjct: 287 CISLIYTLMKQGPYSQPILKRILIVTPSSLMENWDREISKW------------------- 327
Query: 175 NGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG 234
+ + V +K Y+ IL +SY L K + EL + DL
Sbjct: 328 ------LKTERIFTFIVSPTNPLKKYAQSAHIPILIISYELLSKQIR--ELDSVKFDL-- 377
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVL 293
+ DEGH +N L ++ RRI+L+GTP QN+ QE + ++ V G
Sbjct: 378 -MICDEGHRLKNSAIKTSSILDAVECPRRILLTGTPIQNDLQEFYSLITFVNPGLLGTYS 436
Query: 294 RTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGL 353
K I +++ ++ R L+EL + F+ V+ + LPG
Sbjct: 437 EFKTKFENPILQSQQPGVLPMFANLGKAR----LEELNSITSSFILRRTQEVINKYLPGK 492
Query: 354 RHSVVILQPDEFQKRLCK-AVEGV-KSFVELNYCVSLLSV------HPSLLPQQFFESFD 405
+ +V+ P + Q+ L + A++ KS + + L++V HPSL+ E D
Sbjct: 493 QEAVIFCHPSKLQETLLRTAIQFYEKSDRSTYFPLQLITVLKKICNHPSLIAST--EKID 550
Query: 406 VDSAKLARLK--------LDPEAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLIMEQ 455
V + + L + P K L LLE + EK ++ S Y + L +IM
Sbjct: 551 VGGSLIKLLNDNLPPWQDMGPTDSGKLAVLDSLLETLIQRQEKAVIVSYYGKTLDMIMGL 610
Query: 456 LRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515
H +N++ + +DG + R ++ N PSS I L S KA G+NL GASR
Sbjct: 611 CEH-YNYKYCR----LDGSTPSQDRCKIVSSFNSPSSDTFIFLLSAKAGGIGLNLTGASR 665
Query: 516 VVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
++L D WNP + QA+SR +R GQ R V +Y LIT+ ++E +RQ K S V
Sbjct: 666 LILYDNDWNPASDLQAMSRIWRDGQTRNVFIYRLITAFSIEEKIYQRQISKTSLSGTV 723
>gi|444316964|ref|XP_004179139.1| hypothetical protein TBLA_0B08040 [Tetrapisispora blattae CBS 6284]
gi|387512179|emb|CCH59620.1| hypothetical protein TBLA_0B08040 [Tetrapisispora blattae CBS 6284]
Length = 955
Score = 159 bits (401), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 144/546 (26%), Positives = 240/546 (43%), Gaps = 93/546 (17%)
Query: 83 KNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR-----PV 137
KN G +++++N G GCI++ G GKT + + ++ P+ + +
Sbjct: 364 KNTQGASQVEKVENPEDNRGAYGCIMADEMGLGKTLQCITLMWTLLRQGPQGKRLIDKCI 423
Query: 138 IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYV 197
I+ P S++ W E KW L LS +D +K
Sbjct: 424 IVCPSSLVNNWANELIKW--------LGPGTLSP-------LAIDGKKSSLMSSNSTVSE 468
Query: 198 KLYSWKMGTG------ILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCM 251
+ +W G +L +SY + V D+L + GL + DEGH +N D+
Sbjct: 469 AIRAWGQAKGRNIVKPVLIISYETLRRNV--DQLKNTEV---GLMLADEGHRLKNGDSLT 523
Query: 252 FKALSRIKTRRRIILSGTPFQNNFQELENTLSL-------VRQEFGE-----VLRT--VR 297
F AL I RR+ILSGTP QN+ E L+ R EF + +LR+
Sbjct: 524 FTALDSINCPRRVILSGTPIQNDLSEYFALLNFSNPGLLGTRLEFRKNYEIPILRSRDAD 583
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
+ +EI+K ++L +L ++ F+ +L + LP V
Sbjct: 584 ATDKEIAKGT-----------------QQLTQLSNIVSKFIIRRTNDILSKYLPCKYEHV 626
Query: 358 VILQPDEFQKRLCK----------AVEGVKSFVELNYCVSL--LSVHPSLLPQQ------ 399
+ + FQ+ L K V GV L L L HP+LL +
Sbjct: 627 IFVNLKPFQRELYKRFVKSRDIKKVVNGVNGSQPLKAIGLLKKLCNHPNLLNLEDELNSV 686
Query: 400 FFESFDV-------DSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLI 452
+ FD+ +++ + + + I RFL ++ +++K+++ S Y + L LI
Sbjct: 687 MTDDFDIPDDFNMNGNSRTIQTEYSGKFSILERFLH-QIKTKSDDKIVLISNYTQTLDLI 745
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
+ R++ VL +DG + KRQ ++ NDP Q I L S+KA GINL+G
Sbjct: 746 EKMCRNKHYG-----VLRLDGTMSINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINLIG 800
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNM 572
A+R++LLD WNP ++QA++R +R GQK+ +Y I++ T+E +RQ+ K+ S+
Sbjct: 801 ANRLILLDPDWNPAADQQALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSC 860
Query: 573 VFPSSD 578
V + +
Sbjct: 861 VVDAKE 866
>gi|367000820|ref|XP_003685145.1| hypothetical protein TPHA_0D00680 [Tetrapisispora phaffii CBS 4417]
gi|357523443|emb|CCE62711.1| hypothetical protein TPHA_0D00680 [Tetrapisispora phaffii CBS 4417]
Length = 944
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 141/527 (26%), Positives = 240/527 (45%), Gaps = 81/527 (15%)
Query: 93 ELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR-----PVIIAPRSMLLT 147
E ++++ G GCI++ G GKT + + +K P+ + +I+ P S++
Sbjct: 359 ETQDNSKNIGAYGCIMADEMGLGKTLQCITLMWTLLKQGPKGKRLIDKCIIVCPSSLVNN 418
Query: 148 WEEEFKKW---GIDIPFYNLNKPELSGKEN---NGAVALMDNRKRGRGKVGLIRYVKLYS 201
W E KW G P + GK++ NG A + RG + VK
Sbjct: 419 WANELIKWLGPGTLTPL------AIDGKKSSLANGGNATVSQAVRGWAQARGRNIVK--- 469
Query: 202 WKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTR 261
+L +SY + V D+L G + GL + DEGH +N ++ F AL+ I
Sbjct: 470 -----PVLIISYETLRRNV--DQLQGCKV---GLMLADEGHRLKNGESLTFTALNSIDCP 519
Query: 262 RRIILSGTPFQNNFQELENTLSL-------VRQEFGEVLRTVRKSGREISKAKHASLISS 314
RR+ILSGTP QN+ E + L+ R EF +GR+ S+A +
Sbjct: 520 RRVILSGTPIQNDLSEYFSLLNFSNPGLLGTRSEFRRNFEIPILNGRD-SEASDEDI--- 575
Query: 315 IGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVE 374
+ + +L++L ++ F+ +L + LP V+ + FQ+ + K++
Sbjct: 576 ------KKGERQLQKLSHIVSKFIIRRTNDILSKYLPCKYEHVIFVNLKPFQRDVYKSII 629
Query: 375 GVKSFVE-----------LNYCVSLLSV---HPSLLPQQ-----------FFESFDVDSA 409
K E + + LL HP L+ + + +++ +A
Sbjct: 630 KTKEVAEAVKNSKKGGSMMLRSIGLLKKLCNHPDLINLEEELDNLDDSLVIPDDYNISNA 689
Query: 410 ---KLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQ 466
+ R++ + I RFL + +N+K+++ S Y + L LI + R R
Sbjct: 690 AKSRDVRIEFSGKFAILERFLH-KINTESNDKIVLISNYTQTLDLIEKLCRRR-----QY 743
Query: 467 EVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPF 526
VL +DG ++ KRQ ++ N P I L S+KA GINL+GA+R++LLD WNP
Sbjct: 744 GVLRLDGTMNINKRQKLVDRFNSPDEPEFIFLLSSKAGGCGINLIGANRLILLDPDWNPA 803
Query: 527 VERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
++QA++R +R GQK+ +Y I++ T+E +RQ+ K+ S+ V
Sbjct: 804 SDQQALARVWRDGQKKDCFIYRFISTGTIEEKVFQRQSMKMSLSSCV 850
>gi|395537346|ref|XP_003770664.1| PREDICTED: DNA repair and recombination protein RAD54-like
[Sarcophilus harrisii]
Length = 822
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 136/536 (25%), Positives = 237/536 (44%), Gaps = 71/536 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W+ + G G +GCI++ G GKT + +
Sbjct: 229 KILRPHQREGVKFLWECVTG----------RRIPGSHGCIMADEMGLGKTLQCITLMWTL 278
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P +P V+++P S++ W E KW L G+ A+ D
Sbjct: 279 LRQSPESKPEIDKAVVVSPSSLVRNWSNEVHKW-------------LGGRIQPLAI---D 322
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F + + GL + DEGH
Sbjct: 323 GGSKEEIDQKLGSFMNQRGSRVPSPILIISYETFRLHAEALQRGSV-----GLVICDEGH 377
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL+ + T RR+++SGTP QN+ E SLV +L T ++ R
Sbjct: 378 RLKNSENQTYQALNSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGTAQEFKRH 434
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQP 362
+ A + +E+L+EL + + +L + LP VV +
Sbjct: 435 FELPILKGRDADASEAARQKGEERLRELVGIVNRCLIRRTSDILSKYLPVKIEQVVCCRL 494
Query: 363 DEFQKRLCKA-VEGVKSFVELN------------YCVSLLSVHPSLLPQQFFE------- 402
Q L + ++ K EL + L HP L+ ++ E
Sbjct: 495 TPLQAELYRRFLQQAKPAEELREGKMSVSSLSSITSLKKLCNHPGLIYEKCVEEEEGFSG 554
Query: 403 SFDVDSAKLARLKLDPEAGIKT---RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR 459
+ D+ + ++P+ K ++L + ++++KV++ S Y + L L + R R
Sbjct: 555 TLDLFPPGYSCKSVEPQLSGKMLVLDYILAVTRRTSSDKVVLVSNYTQTLDLFEKLCRLR 614
Query: 460 FNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
LY +DG +KKR + N+PSS I + S+KA G+NL+GA+R+V
Sbjct: 615 -------RYLYVRLDGTMSIKKRAKVVERFNNPSSPDFIFMLSSKAGGCGLNLIGANRLV 667
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ K S+ V
Sbjct: 668 MFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQTHKKALSSCV 723
>gi|195550742|ref|XP_002076092.1| GD12001 [Drosophila simulans]
gi|194201741|gb|EDX15317.1| GD12001 [Drosophila simulans]
Length = 783
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 131/504 (25%), Positives = 230/504 (45%), Gaps = 72/504 (14%)
Query: 113 GTGKTGLTLVFLQAYMKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKP 167
G GKT + + ++ P C+P ++++P S++ WE+EF KW + L P
Sbjct: 187 GLGKTLQCVTLVWTLLRQGPECKPTINKAIVVSPSSLVKNWEKEFTKW---LQGRLLCLP 243
Query: 168 ELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDE 224
G + N AL + S ++GT +L +SY R++ +++ E
Sbjct: 244 MEGGTKENTIRAL--------------EQFSMTSARLGTPVLLISYETFRIYAEILCKYE 289
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
+ G+ + DEGH +N D ++AL +KT+RR++LSGTP QN+ E + ++
Sbjct: 290 V--------GMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNF 341
Query: 285 VRQEF------------GEVLRTVRKSGREISKA----KHASLISSIGRCANHRDDEKLK 328
V E +LR E + K LI + +C R ++ L
Sbjct: 342 VNPEMLGTAAVFKRNFESAILRGQNTDSTEAERQRAIEKTQELIGLVDQCIIRRTNQILT 401
Query: 329 ELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRL--CKAVEGVKSFVELNYCV 386
+ V K T +Q L L+ D+ ++ L C + + ++
Sbjct: 402 KYLPVKFEMVICAKLTAIQ-----LELYTNFLKSDQVRRSLADCNEKASLTALADITTLK 456
Query: 387 SLLSVHPSLLPQQ-------FFESFDVDSAKLARLKLDPEAGIK---TRFLLILLELSTN 436
+ S HP L+ ++ F S +V + L+PE K F+L + N
Sbjct: 457 KICS-HPDLIYEKLTAREKGFENSQNVLPSNYKPKDLNPELSGKFMLLDFMLAAIRAEGN 515
Query: 437 EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI 496
+KV++ S Y + L L EQL + + + +DG +KKR ++ NDP S + +
Sbjct: 516 DKVVLISNYTQTLDLF-EQLARKRKY----GFVRLDGTMSIKKRSKVVDRFNDPESDSFL 570
Query: 497 MLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
+ S+KA G+NL+GA+R+ + D WNP + QA++R +R GQK+ ++Y L+ S ++E
Sbjct: 571 FMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIE 630
Query: 557 WDKLRRQARKVWWSNMVFPSSDGG 580
L+RQ K S+ + +++
Sbjct: 631 EKILQRQTHKKSLSSTIIDNNESA 654
>gi|50302399|ref|XP_451134.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640265|emb|CAH02722.1| KLLA0A03069p [Kluyveromyces lactis]
Length = 895
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 138/523 (26%), Positives = 237/523 (45%), Gaps = 71/523 (13%)
Query: 90 DLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR-----PVIIAPRSM 144
D+ ++ ++ G GCI++ G GKT L + +K P+ R +I+ P S+
Sbjct: 312 DVIKINENSRNRGAYGCIMADEMGLGKTLQCLALMWTMLKQGPQGRRSIDKCIIVCPSSL 371
Query: 145 LLTWEEEFKKWGIDIPFYNLNKPELSGKE---NNGAVALMDNRKRGRGKVGLIRYVKLYS 201
+ W E KW + +L+ + GK+ NNG VA + +
Sbjct: 372 VNNWANEIDKW---LGPGSLSSLAIDGKKSSLNNGNVA-----------DSVSHWASAQG 417
Query: 202 WKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTR 261
+ +L +SY + V ++L + GL + DEGH +N D+ F AL I+
Sbjct: 418 RNIVKPVLIISYDTLRRNV--EQLKNCEV---GLMLADEGHRLKNADSLTFTALDSIRCP 472
Query: 262 RRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLIS----SIGR 317
RR+ILSGTP QN+ E L+ RK+ SL + ++G+
Sbjct: 473 RRVILSGTPIQNDLSEYFALLNFSNPGLLGSRNDFRKNFELPILQSRDSLATDEEVTLGK 532
Query: 318 CANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV---E 374
++L++L ++ F+ +L + LP V+ + FQ+ L +
Sbjct: 533 -------DRLRQLSNIVSKFIIRRTNNILAKYLPCKYEHVIFINLTPFQQSLYQHFIESR 585
Query: 375 GVKSFVELNYCVSLLSV--------HPSLL-------------PQQFFESFDVDSAK--- 410
VK V+ + L ++ HP LL P + S D +++
Sbjct: 586 AVKKIVKGDSNQPLKAIGLLKKLCNHPDLLELSEDIPGSEELIPDDYQSSVDSRTSRNRS 645
Query: 411 LARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY 470
+ + + + RFL ++ +N+K+++ S Y + L LI + + VL
Sbjct: 646 VIQTAFSSKFSVLARFLY-KIKTESNDKIVLISNYTQTLDLI-----EKMCFSNHYGVLR 699
Query: 471 MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQ 530
+DG ++ KRQ ++ NDP Q I L S+KA GINL+GA+R++LLD WNP ++Q
Sbjct: 700 LDGTMNINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILLDPDWNPAADQQ 759
Query: 531 AISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
A++R +R GQK+ +Y I++ T+E +RQ+ K+ S+ V
Sbjct: 760 ALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCV 802
>gi|312071167|ref|XP_003138483.1| hypothetical protein LOAG_02898 [Loa loa]
gi|307766356|gb|EFO25590.1| hypothetical protein LOAG_02898 [Loa loa]
Length = 755
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 145/542 (26%), Positives = 244/542 (45%), Gaps = 87/542 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F++ + G +GCI++ G GKT + + ++
Sbjct: 144 PHQREGVKFMYDCVTG----------VRIPSAHGCIMADEMGLGKTLQCITLMWTLLRQG 193
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P +P VI+ P S++ W++E +KW L G+ N V
Sbjct: 194 PDAKPTLNKAVIVCPSSLVKNWDKEIRKW-------------LGGRVNALPVD------- 233
Query: 187 GRGKVGLIRYVKLYSWKMG----TGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEG 241
GK + R ++ + +MG T +L +SY F S ILL GL + DEG
Sbjct: 234 SGGKDEIDRNLEKFMSQMGVRCPTPVLIISYETFRLHAS------ILLQKEIGLIICDEG 287
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKSG 300
H +N D ++AL +K RR+++SGTP QN+ E + ++ V G R+
Sbjct: 288 HRLKNSDNQTYQALFGLKCERRVLISGTPIQNDLLEYYSLINFVNPGLLGTASEFKRRFE 347
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
I + + A + + D L E+ ++ V +L + LP ++
Sbjct: 348 NIILRGRDADATDA----QREKGDAALTEMSSIVSRCVIRRTSALLTKYLPVKYELIICC 403
Query: 361 QPDEFQKRLC-------------KAVEGVK-SFVELNYCVSL--LSVHPSLL---PQQFF 401
+ E Q++L K EG K + L++ +L L HP L+ Q+
Sbjct: 404 KLTELQEKLYRQLISTFSMGGKQKVTEGDKITGTALSFITNLKKLCNHPQLIFNKCQKKE 463
Query: 402 ESFD----VDSAKLARLKLDPEAGIKTR---FLLILLELSTNEKVLVFSQYIEPLTLIME 454
E F+ + + R K +P K + +LL +TN+K ++ S Y + + +E
Sbjct: 464 EGFEGCLKLFPGEFGR-KFEPAFSGKMKVLDYLLAATRTTTNDKFVLVSNYTQTIDAFVE 522
Query: 455 --QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
QLR R+ + + +DG +K+R + NDP S + L S+KA G+NL+G
Sbjct: 523 LCQLR-RYPY------IRLDGTCTIKQRAKLVEKFNDPKSVEYVFLLSSKAGGCGLNLIG 575
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNM 572
A+R+++ D WNP + QA++R +R GQ++ +Y L+ S ++E +RQA K S+
Sbjct: 576 ANRLIMFDPDWNPANDDQAMARVWRDGQRKNCFIYRLLASGSIEEKMFQRQAHKKALSSC 635
Query: 573 VF 574
V
Sbjct: 636 VI 637
>gi|178056748|ref|NP_001116655.1| DNA repair and recombination protein RAD54-like [Sus scrofa]
gi|168084900|dbj|BAG09488.1| DNA repair protein RAD54 [Sus scrofa]
Length = 747
Score = 158 bits (400), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 143/540 (26%), Positives = 239/540 (44%), Gaps = 79/540 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG F+W+ + S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVRFLWECV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 201 LRQSPDCKPEIDKAVVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 244
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 245 GGSKDEIDQKLEGFMNQRGARVPSPILIISYETFRLHVGVLQKGSV-----GLVICDEGH 299
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL+ + T RR+++SGTP QN+ E SLV +L T E
Sbjct: 300 RLKNSENQTYQALNSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGLLGT----AHE 352
Query: 303 ISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ A+ D +E+L+EL + + +L + LP VV
Sbjct: 353 FKKRFELPILKGRDAAASEEDRRLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVV 412
Query: 359 I--LQP--DEFQKRLCKAVEGVKSFVE---------LNYCVSLLSVHPSLLPQQFFESFD 405
L P E KR + + + E + L HP+L+ + E D
Sbjct: 413 CCRLTPLQTELYKRFLRQAKPAEELREGKMSVSSLSSITSLKKLCNHPALIYDKCVEEED 472
Query: 406 VDSAKL-------ARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQ 455
+ L + L+P+ K L +L ++ +++KV++ S Y + L L +
Sbjct: 473 GFAGALDFFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKL 532
Query: 456 LRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
R R LY +DG +KKR + N PSS + + S+KA G+NL+GA
Sbjct: 533 CRAR-------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGA 585
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 586 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
>gi|212533393|ref|XP_002146853.1| dsDNA-dependent ATPase (Rad54b), putative [Talaromyces marneffei
ATCC 18224]
gi|210072217|gb|EEA26306.1| dsDNA-dependent ATPase (Rad54b), putative [Talaromyces marneffei
ATCC 18224]
Length = 1054
Score = 158 bits (400), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 158/549 (28%), Positives = 235/549 (42%), Gaps = 93/549 (16%)
Query: 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQ 125
+ K + HQREG +F+++ + G D + G G I++ G GKT T+ L
Sbjct: 308 LSKHLREHQREGVKFLYECVMGLRDYN----------GEGAILADEMGLGKTLQTITLLW 357
Query: 126 AYMKLHP--RCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV 178
+K +P PVI + P +++ W +EF+KW G E G
Sbjct: 358 TLLKQNPIYEASPVIKKALIVCPVTLINNWRKEFRKW--------------LGNERIGVF 403
Query: 179 ALMDNRKRGRGKVGLIRYVKLYSWKMGTG--ILGLSYRLFEKLVSGDELSGILLDLPGLF 236
D RK KL + MG I+ + Y + G L G +D+
Sbjct: 404 VFDDKRK------------KLTDFTMGKAYNIMIVGYEKLRTVQDG-LLKGHGVDI---V 447
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTV 296
+ DEGH + +A+ + T +RIILSGTP QN+ E + LV +L T
Sbjct: 448 IADEGHRLKTVQNKSGQAIQALNTAKRIILSGTPIQNDLSEFFAAVDLVNPG---ILGTY 504
Query: 297 RKSGREISKAKHASLISSIGRCANHRDDEKLK----ELKEKIAPFVNVHKGTVLQESLPG 352
R +E ++ S A RD EK + EL+E + F+ VL + LP
Sbjct: 505 RNFMKEF----EGPIVRSQQPEATMRDIEKGEARGEELRELTSMFILRRTADVLSKYLPP 560
Query: 353 LRHSVVILQPDEFQKRLCKAVEGVKSFVE----LNYCVSLLSV------HPSLL------ 396
V++ P Q + + V G F SLL+V PSLL
Sbjct: 561 KTEYVILCNPTSVQASIYRHVLGSPIFQSALGNTEGAFSLLTVLKKLCNSPSLLTAKAGD 620
Query: 397 --PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILL---ELSTNEKVLVFSQYIEPLTL 451
P E+ R + P + K R L LL + +T+EK+++ S Y L L
Sbjct: 621 EPPNATMEALLSTLTPSLRRQFSPSSSGKIRVLDQLLHNLQTTTSEKIVLVSNYTSTLNL 680
Query: 452 I---MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEG 507
+ + L F L +DG KRQS ++ N P+S+ L S KA G
Sbjct: 681 LGILLTSLSLPF--------LRLDGSTPSAKRQSLVDDFNRAPASKCFAFLLSAKAGGTG 732
Query: 508 INLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567
+NL GASR+VL DV WNP + QA++R +R GQKR ++Y ++ LE +RQ K+
Sbjct: 733 LNLTGASRLVLFDVDWNPATDLQAMARIHRDGQKRHCYIYRIMLKGALEEKIWQRQVTKI 792
Query: 568 WWSNMVFPS 576
++ V S
Sbjct: 793 GLADSVMES 801
>gi|401625828|gb|EJS43818.1| rad54p [Saccharomyces arboricola H-6]
Length = 907
Score = 158 bits (400), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 144/574 (25%), Positives = 241/574 (41%), Gaps = 104/574 (18%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELK----NSTSTG---------------------- 101
K + PHQ EG F+++ + G + D L+ N++S
Sbjct: 276 KILRPHQVEGVRFLYRCVTGLVMKDYLEAEAFNTSSASEDPLKSDEKALTQSRKTEENNR 335
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR-----PVIIAPRSMLLTWEEEFKKWG 156
G GCI++ G GKT + + ++ P+ + +I+ P S++ W E KW
Sbjct: 336 GAYGCIMADEMGLGKTLQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNWANELIKWL 395
Query: 157 IDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTG------ILG 210
N +D +K G + +++W G +L
Sbjct: 396 ---------------GPNTLTPLAVDGKKSSMGGANITVSQAIHTWAQTQGRNIVKPVLI 440
Query: 211 LSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTP 270
+SY + V + S + GL + DEGH +N D+ F AL I RR+ILSGTP
Sbjct: 441 ISYETLRRNVDQLKNSNV-----GLMLADEGHRLKNGDSLTFTALDSINCPRRVILSGTP 495
Query: 271 FQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDE----- 325
QN+ E LS + S E K ++ GR A+ D E
Sbjct: 496 IQNDLSEYFALLSFSNP-------GLLGSRAEFRKNFENPILR--GRDADATDKEIAKGE 546
Query: 326 -KLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQ-------------KRLCK 371
+L++L ++ F+ +L + LP V+ + Q K++ K
Sbjct: 547 VQLQKLSTIVSKFIIRRTNDILSKYLPCKYEHVIFVNLKPLQNSLYNKLLKSREVKKVVK 606
Query: 372 AVEGVKSFVELNYCVSLLSVHPSLLPQQFFE------------SFDVDSAKLARLKLDPE 419
+ G + + L + HP+LL + S A+ + K +
Sbjct: 607 GIGGSQPLRAIGILKKLCN-HPNLLNFEDEFDDEDDLELPDDYSMPSSKARDVQTKYSAK 665
Query: 420 AGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKK 479
I RFL + +++K+++ S Y + L LI R++ + +DG + K
Sbjct: 666 FAILERFLH-KINTESDDKIVLISNYTQTLDLIERMCRYKH-----YSAVRLDGTMTINK 719
Query: 480 RQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLG 539
RQ ++ NDP Q I L S+KA GINL+GA+R++L+D WNP ++QA++R +R G
Sbjct: 720 RQKLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDG 779
Query: 540 QKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
QK+ +Y I++ T+E +RQ+ K+ S+ V
Sbjct: 780 QKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCV 813
>gi|158286564|ref|XP_308811.4| AGAP006945-PA [Anopheles gambiae str. PEST]
gi|157020528|gb|EAA04280.4| AGAP006945-PA [Anopheles gambiae str. PEST]
Length = 871
Score = 158 bits (399), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 147/545 (26%), Positives = 232/545 (42%), Gaps = 90/545 (16%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
VP V + + PHQREG F+++ + G L+ G G I++ G GKT +
Sbjct: 245 VPLCVTRHLRPHQREGVAFLYECVTGLRMLEP--------PGCGAILADEMGLGKTLQCI 296
Query: 122 VFLQAYMKLHPRCRPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNG 176
+ +K P +P+ I+ P S++ W+ E KW
Sbjct: 297 ALMYTLLKTGPYGKPLAKRVLIVTPSSLVDNWDREITKW--------------------- 335
Query: 177 AVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLF 236
+ + + VG +K Y+ IL +SY + K + EL + DL
Sbjct: 336 ----LRSERIFTFIVGPNNKLKRYAQSPHIPILIISYEMLAKQIG--ELETVKFDL---M 386
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR-------QEF 289
DEGH +N + F L+R++ RRR++L+GTP QN+ QE + ++ V Q+F
Sbjct: 387 FCDEGHRLKNSNVKAFGVLNRLECRRRVLLTGTPIQNDLQEFFSLINFVNPGAIGTYQDF 446
Query: 290 GEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQES 349
R + + L SI E+L EL FV V+
Sbjct: 447 -----KARYETPIVVSQRPGVLPQSI-----ELGIERLNELNAITGRFVLRRTQEVINRY 496
Query: 350 LPGLRHSVVILQPDEFQKRLC----------KAVEGVKSFVELNYCVSLLSVHPSLLPQQ 399
LP VV P Q +L K + S ++L + + HPSL+ Q
Sbjct: 497 LPDKHEVVVFCHPSALQTQLTRTALSFYDSEKGADNAVSPLQLITILKKICNHPSLVSVQ 556
Query: 400 FFESFDVDSAKLARL---------KLDPEAGIKTRFLLILLE--LSTNEKVLVFSQYIEP 448
D L L ++ P K + LLE L+ EK+++ S Y +
Sbjct: 557 G----KGDPESLVHLLAEQLPPWQRMGPTDSAKLGIVEALLEAMLAMQEKIVIVSYYSKT 612
Query: 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGI 508
L +I H +N++ + +DG R + N+P++ + I+L S KA G+
Sbjct: 613 LDMIGGLCDH-YNYKYCR----LDGSTAGPDRSRIVAAFNNPANDSFILLLSAKAGGAGL 667
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NL+GASR+VL D WNP + QA+SR +R GQ++ V +Y L+T+ ++E +RQ K
Sbjct: 668 NLIGASRLVLYDNDWNPANDLQAMSRVWRDGQRKPVFIYRLLTAYSIEERIFQRQISKTS 727
Query: 569 WSNMV 573
S V
Sbjct: 728 LSGTV 732
>gi|327308794|ref|XP_003239088.1| DNA repair and recombination protein RAD54 [Trichophyton rubrum CBS
118892]
gi|326459344|gb|EGD84797.1| DNA repair and recombination protein RAD54 [Trichophyton rubrum CBS
118892]
Length = 808
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 155/564 (27%), Positives = 241/564 (42%), Gaps = 105/564 (18%)
Query: 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLV 122
PR + K + PHQ EG +F+++ G +D KN+ +GCI++ G GKT +
Sbjct: 209 PR-LAKILRPHQIEGVKFLYRCTTGLVD----KNA------HGCIMADGMGLGKTLQCIT 257
Query: 123 FLQAYMKLHPRC------RPVIIAPRSMLLTWEEEFKKW-GIDI--PFY---NLNKPELS 170
+ +K P + VI P +++ W E KW G D PF +K EL+
Sbjct: 258 LMWTLLKQSPEAGKPTVQKAVIACPATLVGNWANELVKWLGKDAINPFVIDGKASKTELT 317
Query: 171 GKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILL 230
+ A+A GR V + V + +M + DEL +
Sbjct: 318 SQLRQWAIA------SGRSVVRPVLIVSYETLRMNS----------------DELRDTQI 355
Query: 231 DLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV----- 285
GL + DEGH +N D+ + AL+++ ++R+ILSGTP QN+ E + L
Sbjct: 356 ---GLLLCDEGHRLKNADSQTYVALNKLNVQKRVILSGTPIQNDLSEYFSLLDFANPGIL 412
Query: 286 --RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
R EF + GR+ + +E+L EL + F+
Sbjct: 413 GSRSEFHKTYEIPILRGRDADGTDE----------QQKKGNERLAELLNLVNKFIIRRSN 462
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAV---EGVKSFVELNYCVSLLSV--------H 392
+L + LP VV FQ L +KS + L ++ H
Sbjct: 463 DLLSKYLPVKYEHVVFCNLSPFQLDLYNHFIQSPEIKSLLRGKGSQPLKAIGILKKLCNH 522
Query: 393 PSLLP---------QQFFESFDVDSAKLARLKLDPEAGIKTRF---------LLILLELS 434
P LL Q F E V + + + D EA KT + +L +
Sbjct: 523 PDLLKLSEDLPGCEQYFPEDMTVSNGR----RGDREA--KTWYSGKMMVLDRMLARIRQD 576
Query: 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
TN+K+++ S Y + L L R R + +DG VKKR ++ NDP+ +
Sbjct: 577 TNDKIVLISNYTQTLDLFERLCRAR-----AYGCIRLDGTMGVKKRSKLVDKFNDPNGEE 631
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
+ L S+KA GINLVGA+R+VL D WNP ++QA++R +R GQ + VY I + T
Sbjct: 632 FVFLLSSKAGGCGINLVGANRLVLFDPDWNPAADQQALARVWRDGQSKDCFVYRFIATGT 691
Query: 555 LEWDKLRRQARKVWWSNMVFPSSD 578
+E +RQ+ K S+ V S++
Sbjct: 692 IEEKIFQRQSHKQSLSSCVIDSAE 715
>gi|198417079|ref|XP_002130103.1| PREDICTED: similar to RAD54-like [Ciona intestinalis]
Length = 775
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 145/559 (25%), Positives = 256/559 (45%), Gaps = 99/559 (17%)
Query: 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLV 122
PR + K + PHQREG +F++ + G +GCI++ G GKT +
Sbjct: 166 PR-LSKVLRPHQREGVKFLFDCVTG----------VRVKEQHGCIMADEMGLGKTLQCIT 214
Query: 123 FLQAYMKLHPRCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGA 177
+ +K P P+I ++P S++ WE+E KW L G+ A
Sbjct: 215 LMWTLLKQGPDMTPIIEKAVVVSPSSLVKNWEKEVNKW-------------LGGQVQTLA 261
Query: 178 VALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDELSGILLDLPG 234
+ D+ + L +++ + ++G IL +SY RL K++ ++ G
Sbjct: 262 I---DSGSKQEIDRNLDQFMSQHGRRVGLPILLISYETFRLHAKVLHKGKI--------G 310
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVL 293
L + DEGH +N + + AL+++ +RR++LSGTP QN+ E + + V + G
Sbjct: 311 LVICDEGHRLKNCENQTYSALAKVNCKRRVLLSGTPIQNDLLEYFSLVHFVNEGLLGTAN 370
Query: 294 RTVRKSGREISKAKHASLISSIGRCANHRD--DEKLKELKEKIAPFVNVHKGTVLQESLP 351
+K I + + +S C +H+ + KLKEL + + + +L + LP
Sbjct: 371 EFKKKFEFPILRGRDSSA------CDDHKKLGETKLKELVDLVNLCIIRRTSDILSKYLP 424
Query: 352 GLRHSVVILQP---------DEF---QKRLCKAVE---------------GVKSFVELNY 384
++ ++I P + F Q+ +C +++ G+ + +L
Sbjct: 425 -VKTELIICCPLTTLQFELYNSFANKQEFICDSIQPTKKRKKNSEGVTSGGLTAITQLKK 483
Query: 385 CVSLLSVHPSLLPQQFF--ESFDVDSAKLARLKLDP-----EAGIKTR---FLLILLELS 434
L HP+L+ ++ ES D K+ +P E K + +LL + S
Sbjct: 484 ----LCNHPALIYEKCLQQESGCEDMRKIFPSNFNPKLVQPELSGKMKLVDYLLAVTRTS 539
Query: 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
T++K ++ S Y + L L + R R + +DG +KKR + N+PSS
Sbjct: 540 TSDKFVLVSNYTQTLDLCEQLCRSRRYM-----FVRLDGSMTIKKRAKVVEKFNNPSSPE 594
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
+ + S+KA G+NL+GA+R+V+ D WNP + QA++R +R GQK+ +Y L+ + T
Sbjct: 595 FVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKPCFIYRLLGTGT 654
Query: 555 LEWDKLRRQARKVWWSNMV 573
+E +RQA K S+ V
Sbjct: 655 IEEKIFQRQAHKKALSSCV 673
>gi|171906595|ref|NP_033041.3| DNA repair and recombination protein RAD54-like [Mus musculus]
gi|171906597|ref|NP_001116430.1| DNA repair and recombination protein RAD54-like [Mus musculus]
gi|171906599|ref|NP_001116431.1| DNA repair and recombination protein RAD54-like [Mus musculus]
gi|51316197|sp|P70270.2|RAD54_MOUSE RecName: Full=DNA repair and recombination protein RAD54-like;
AltName: Full=RAD54 homolog; Short=mHR54; Short=mRAD54
gi|148698674|gb|EDL30621.1| RAD54 like (S. cerevisiae) [Mus musculus]
Length = 747
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 139/536 (25%), Positives = 237/536 (44%), Gaps = 71/536 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W+ + S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVKFLWECV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E +KW L G+ A+ D
Sbjct: 201 LRQSPECKPEIEKAVVVSPSSLVKNWYNEVEKW-------------LGGRIQPLAI---D 244
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 245 GGSKDEIDRKLEGFMNQRGARVPSPILIISYETFRLHVGVLKKGNV-----GLVICDEGH 299
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T + +
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGTAHEFKKH 356
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI--L 360
S ++ R +E+L+EL + + +L + LP VV L
Sbjct: 357 FELPILKSRDAAASEADRQRGEERLRELIGIVNRCLIRRTSDILSKYLPVKIEQVVCCRL 416
Query: 361 QP--DEFQKRLCKAVEGVKSFVE---------LNYCVSLLSVHPSLLPQQFFESFDVDSA 409
P E KR + + + E + L HP+L+ + D
Sbjct: 417 TPLQTELYKRFLRQAKPEEELREGKMSVSSLSSITSLKKLCNHPALIYDKCVAEEDGFEG 476
Query: 410 KLARL-------KLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQLRHR 459
L ++P+ K L +L ++ +++KV++ S Y + L L + R R
Sbjct: 477 TLGIFPPGYNSKAVEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRVR 536
Query: 460 FNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
LY +DG +KKR + N PSS + + S+KA G+NL+GA+R+V
Sbjct: 537 -------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLV 589
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+ D WNP + QA++R +R GQK++ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 590 MFDPDWNPANDEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
>gi|20987234|gb|AAH21643.1| RAD54 like (S. cerevisiae) [Mus musculus]
Length = 747
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 139/536 (25%), Positives = 237/536 (44%), Gaps = 71/536 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W+ + S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVKFLWECV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E +KW L G+ A+ D
Sbjct: 201 LRQSPECKPEIEKAVVVSPSSLVKNWYNEVEKW-------------LGGRIQPLAI---D 244
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 245 GGSKDEIDRKLEGFMNQRGARVPSPILIISYETFRLHVGVLKKGNV-----GLVICDEGH 299
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T + +
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGTAHEFKKH 356
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI--L 360
S ++ R +E+L+EL + + +L + LP VV L
Sbjct: 357 FELPILKSRDAAASEADRQRGEERLRELIGIVNRCLIRRTSDILSKYLPVKIEQVVCCRL 416
Query: 361 QP--DEFQKRLCKAVEGVKSFVE---------LNYCVSLLSVHPSLLPQQFFESFDVDSA 409
P E KR + + + E + L HP+L+ + D
Sbjct: 417 TPLQTELYKRFLRQAKPEEELREGKMSVSSLSSITSLKKLCNHPALIYDKCVAEEDGFEG 476
Query: 410 KLARL-------KLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQLRHR 459
L ++P+ K L +L ++ +++KV++ S Y + L L + R R
Sbjct: 477 TLGIFPPGYNSKAVEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRVR 536
Query: 460 FNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
LY +DG +KKR + N PSS + + S+KA G+NL+GA+R+V
Sbjct: 537 -------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLV 589
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+ D WNP + QA++R +R GQK++ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 590 MFDPDWNPANDEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
>gi|1495708|emb|CAA66380.1| RAD54 [Mus musculus]
Length = 747
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 139/536 (25%), Positives = 237/536 (44%), Gaps = 71/536 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W+ + S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVKFLWECV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E +KW L G+ A+ D
Sbjct: 201 LRQSPECKPEIEKAVVVSPSSLVKNWYNEVEKW-------------LGGRIQPLAI---D 244
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 245 GGSKDEIDRKLEGFMNQRGARVPSPILIISYETFRLHVGVLKKGNV-----GLVICDEGH 299
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T + +
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGTAHEFKKH 356
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI--L 360
S ++ R +E+L+EL + + +L + LP VV L
Sbjct: 357 FELPILKSRDAAASEADRQRGEERLRELIGIVNRCLIRRTSDILSKYLPVKIEQVVCCRL 416
Query: 361 QP--DEFQKRLCKAVEGVKSFVE---------LNYCVSLLSVHPSLLPQQFFESFDVDSA 409
P E KR + + + E + L HP+L+ + D
Sbjct: 417 TPLQTELYKRFLRQAKPEEELREGKMSVSSLSSITSLKKLCNHPALIYDKCVAEEDGFEG 476
Query: 410 KLARL-------KLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQLRHR 459
L ++P+ K L +L ++ +++KV++ S Y + L L + R R
Sbjct: 477 TLGIFPPGYNSKAVEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRVR 536
Query: 460 FNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
LY +DG +KKR + N PSS + + S+KA G+NL+GA+R+V
Sbjct: 537 -------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLV 589
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+ D WNP + QA++R +R GQK++ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 590 MFDPDWNPANDEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
>gi|431896848|gb|ELK06112.1| DNA repair and recombination protein RAD54-like protein [Pteropus
alecto]
Length = 761
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 146/540 (27%), Positives = 243/540 (45%), Gaps = 79/540 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W+ + S G +GCI++ G GKT + +
Sbjct: 165 KVLRPHQREGVKFLWECV----------TSRRIPGSHGCIMADEMGLGKTLQCITLIWTL 214
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 215 LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 258
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 259 GGSKDEIDQKLEGFMNQRGARVPSPILIISYETFRLHVGVLQKGSV-----GLVICDEGH 313
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T E
Sbjct: 314 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGT----AYE 366
Query: 303 ISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ A D +E+L+EL + + +L + LP VV
Sbjct: 367 FKKHFELPILKGRDAAATEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKFEQVV 426
Query: 359 I-----LQPDEFQKRLCKAV------EGVKSFVELNYCVSL--LSVHPSLLPQQFFE--- 402
LQ + +Q+ L +A EG S L+ SL L HP+L+ + E
Sbjct: 427 CCRLTPLQTELYQRFLRQAKPADELREGKMSVSSLSSITSLKKLCNHPALIYDKCVEEED 486
Query: 403 ----SFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQ 455
+ D+ + + P+ K L +L ++ +++KV++ S Y + L L +
Sbjct: 487 GFEGTLDIFPPGYSSKTIAPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKL 546
Query: 456 LRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
R R LY +DG +KKR + N PSS + + S+KA G+NL+GA
Sbjct: 547 CRAR-------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGA 599
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 600 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 659
>gi|201066350|ref|NP_001128432.1| DNA repair and recombination protein RAD54-like [Rattus norvegicus]
gi|197246624|gb|AAI69034.1| Rad54l protein [Rattus norvegicus]
Length = 748
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 143/540 (26%), Positives = 238/540 (44%), Gaps = 79/540 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W E S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVKFLW----------ECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E +KW L G+ A+ D
Sbjct: 201 LRQSPECKPEIEKAVVVSPSSLVKNWYNEVEKW-------------LGGRIQPLAI---D 244
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 245 GGSKDEIDRKLEGFMNQRGARVPSPILIISYETFRLHVEVLKKGNV-----GLVICDEGH 299
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T E
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGT----AHE 352
Query: 303 ISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ S A+ D +E+L+EL + + +L + LP VV
Sbjct: 353 FKKHFELPILKSRDAAASEADRQLGEERLRELISIVNRCLIRRTSDILSKYLPVKIEQVV 412
Query: 359 ILQPDEFQKRLCKA-VEGVKSFVELN------------YCVSLLSVHPSLLPQQFFESFD 405
+ Q L K + K EL+ + L HP+L+ + D
Sbjct: 413 CCRLTPLQTELYKRFLRQAKPEEELHEGKMSVSSLSSITSLKKLCNHPALIYDKCVAEED 472
Query: 406 VDSAKLARL-------KLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQ 455
L ++P+ K L +L ++ +++KV++ S Y + L L +
Sbjct: 473 GFEGTLGIFPPGYNSKAVEPQLSGKMLVLDYILAMTRSRSSDKVVLVSNYTQTLDLFEKL 532
Query: 456 LRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
R R LY +DG +KKR + N PSS + + S+KA G+NL+GA
Sbjct: 533 CRAR-------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGA 585
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQK++ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 586 NRLVMFDPDWNPANDEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
>gi|294949971|ref|XP_002786396.1| DNA repair protein Rad54, putative [Perkinsus marinus ATCC 50983]
gi|239900688|gb|EER18192.1| DNA repair protein Rad54, putative [Perkinsus marinus ATCC 50983]
Length = 756
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 153/560 (27%), Positives = 244/560 (43%), Gaps = 109/560 (19%)
Query: 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT--GLTLVFLQAYMKL 130
HQR+G +F++ + G ID E G GCI++ G GKT +T+V+ +
Sbjct: 142 HQRQGVQFVFNCLMGLIDDFE---------GEGCILADDMGLGKTLQSVTIVWTLLTANI 192
Query: 131 HPRCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRK 185
P I + P +++ WE EF KW L AVA +
Sbjct: 193 AKNRGPAIERALVVCPAALVKNWEAEFAKW-------------LGESVKVCAVA-----E 234
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTP 244
R KV I + + +L SY F +L D P GL V DE H
Sbjct: 235 SQRDKV--IGAFTGFRYNRDMRVLIASYETFRNHCQ------LLADCPIGLLVCDEAHRL 286
Query: 245 RNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV---------RQEFGEVLRT 295
+ND T ++ ++TR+R++LSGTP QN+ E ++L R F T
Sbjct: 287 KNDRTKTAVCINGLRTRKRLLLSGTPIQNDLDEFFAMITLANPCLAEEKGRNSFRRRFAT 346
Query: 296 VRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRH 355
GRE + ++ DE+L EL + F+ +L + LP +
Sbjct: 347 PISKGREPEASPEEKALA----------DERLAELSDMSNKFILRRTNALLAKVLPPKQI 396
Query: 356 SVVILQPDEFQKRLCKAVEGV-----------------KSFVELNYCVSLLSVHPSLLPQ 398
V ++ + Q RL KA K+ + L ++ L HPSL+ +
Sbjct: 397 VVAFVRLSDIQIRLYKAFISSDCVQTTVARSASRGKVGKNVLSLIQSLTKLCNHPSLIRR 456
Query: 399 ------QFFESFDVDSAKLARL-KLDPEAGIK----------TRFLLILLELST------ 435
+ FE+ D A+L + + +AG K +FLL+ L T
Sbjct: 457 FDKRCDKGFEAADSVFAELDGITRAAKQAGNKRGDQVIISASAKFLLVYNLLRTLRTRDG 516
Query: 436 --NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQ 493
++V++ S Y + + L+ + + W V+ +DG VKKR S ++ NDP +
Sbjct: 517 RSCDRVVIISNYTQTIDLLQRMCQEQ-QW----PVIRLDGSIGVKKRHSLVSTFNDPKAD 571
Query: 494 ARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553
A + L S+KA G+NL+G +R+V+ D WNP +RQA++R +R GQ +V +Y L+++
Sbjct: 572 AFVFLLSSKAGGCGLNLIGGNRLVMFDPDWNPANDRQAMARIWRDGQTKVCWIYRLLSTG 631
Query: 554 TLEWDKLRRQARKVWWSNMV 573
T+E +RQ +K S +V
Sbjct: 632 TIEEKIYQRQMKKDSLSELV 651
>gi|444519261|gb|ELV12696.1| DNA repair and recombination protein RAD54-like protein [Tupaia
chinensis]
Length = 620
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 138/536 (25%), Positives = 235/536 (43%), Gaps = 71/536 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W E S G +GCI++ G GKT + +
Sbjct: 24 KVLRPHQREGVKFLW----------ECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 73
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 74 LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 117
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 118 GGSKDEIDQKLEGFMNQRGARVPSPILIISYETFRLHVGVLQKGSV-----GLVICDEGH 172
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T ++ +
Sbjct: 173 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGTAQEFKKH 229
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQP 362
++ +E+L+EL + + +L + LP VV +
Sbjct: 230 FELPILKGRDAAASEAERQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRL 289
Query: 363 DEFQKRLCKA-VEGVKSFVELN------------YCVSLLSVHPSLLPQQFFE------- 402
Q L K + K EL + L HP+L+ + E
Sbjct: 290 TSLQTELYKRFLRQAKPAEELREGKMSVSSLSSITSLKKLCNHPALIYDKCVEEENGFEG 349
Query: 403 SFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQLRHR 459
+ ++ + L+P+ K L +L ++ +++KV++ S Y + L L + R R
Sbjct: 350 ALNIFPPGYSSKALEPQLSGKMLVLDYILAVTRSCSSDKVVLVSNYTQTLDLFEKLCRAR 409
Query: 460 FNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
LY +DG +KKR + N PSS + + S+KA G+NL+GA+R+V
Sbjct: 410 -------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLV 462
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 463 MFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 518
>gi|448525548|ref|XP_003869143.1| Rad54 protein [Candida orthopsilosis Co 90-125]
gi|380353496|emb|CCG23006.1| Rad54 protein [Candida orthopsilosis]
Length = 836
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 146/545 (26%), Positives = 245/545 (44%), Gaps = 85/545 (15%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ G +F+++ AG +D GCI++ G GKT L +
Sbjct: 243 KILRPHQIAGVKFLYRCTAGLMD----------PKAKGCIMADEMGLGKTLQCLTLMWTL 292
Query: 128 MKLHPRCR-----PVIIAPRSMLLTWEEEFKKW---GIDIPFYNLNKPELSGKENNGAVA 179
++ PR + +I+ P S++ W E KW G+ P K S K N+ A
Sbjct: 293 LRQSPRGKRTIEKCIIVCPSSLVRNWANEIVKWLGEGVLTPLAIDGK---STKSNDLGAA 349
Query: 180 LMD-NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVF 238
L + +GR V +L +SY + V D+L+G + GL +
Sbjct: 350 LQQWSTAQGRNIV--------------RPVLIISYETLRRNV--DKLAGTEV---GLMLA 390
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK 298
DEGH +N ++ F AL+ ++ RR+ILSGTP QN+ E + L+ + RK
Sbjct: 391 DEGHRLKNGESLTFTALNSLRCDRRVILSGTPIQNDLSEYFSLLNFANPGYLGTRNDFRK 450
Query: 299 S-GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
+ I + + A + D KL EL + ++ F+ +L + LP V
Sbjct: 451 NFENAILRGRDADATDK----EREKGDAKLLELSQLVSKFIIRRTNDILSKYLPVKYEYV 506
Query: 358 VILQPDEFQKRLC----------KAVEGVKSF-VELNYCVSLLSVH-------------P 393
+ QK L K ++G+ S ++ + L H
Sbjct: 507 LFTGLSPMQKSLYNHFITSPEIKKLLKGIGSQPLKAIGMLKKLCNHPDLLDLPDDLEGCE 566
Query: 394 SLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLI-----LLELSTNEKVLVFSQYIEP 448
+L+P+ + S K + + +FL++ + T++K+++ S Y +
Sbjct: 567 NLIPEDYESSITATGRKR-----EVQTWFSGKFLILERFLHKIHRETDDKIVLISNYTQT 621
Query: 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGI 508
L LI + R N + G L +DG ++ KRQ ++ NDP+ I L S+KA GI
Sbjct: 622 LDLIEKMCR---NKKYGS--LRLDGTMNINKRQKLVDRFNDPNGSEFIFLLSSKAGGCGI 676
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NL+GA+R++L+D WNP ++QA++R +R GQK+ +Y I++ T+E +RQ+ K+
Sbjct: 677 NLIGANRLILIDPDWNPASDQQALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMS 736
Query: 569 WSNMV 573
S+ V
Sbjct: 737 LSSCV 741
>gi|26353994|dbj|BAC40627.1| unnamed protein product [Mus musculus]
Length = 747
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 139/536 (25%), Positives = 237/536 (44%), Gaps = 71/536 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W+ + S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVKFLWECV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E +KW L G+ A+ D
Sbjct: 201 LRQSPECKPEIEKAVVVSPSSLVKNWYNEVEKW-------------LGGRIQPLAI---D 244
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 245 GGSKDEIDRKLEGFMNQRGARVPSPILIISYETFRLHVGVLKKGNV-----GLVICDEGH 299
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T + +
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGTAHEFKKH 356
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI--L 360
S ++ R +E+L+EL + + +L + LP VV L
Sbjct: 357 FELPILKSRDAAASEADRQRGEERLRELIGIVNRCLIRRTSDILSKYLPVKIEQVVCCRL 416
Query: 361 QP--DEFQKRLCKAVEGVKSFVE---------LNYCVSLLSVHPSLLPQQFFESFDVDSA 409
P E KR + + + E + L HP+L+ + D
Sbjct: 417 TPLQTELYKRFLRQAKPEEELREGKMSVSSLSSITSLKKLCNHPALIYDKCVAEEDGFEG 476
Query: 410 KLARL-------KLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQLRHR 459
L ++P+ K L +L ++ +++KV++ S Y + L L + R R
Sbjct: 477 TLGIFPPGYNSKAVEPQLSGKMLVLDYVLAVTRSRSSDKVVLVSNYTQTLDLFEKLCRVR 536
Query: 460 FNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
LY +DG +KKR + N PSS + + S+KA G+NL+GA+R+V
Sbjct: 537 -------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLV 589
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+ D WNP + QA++R +R GQK++ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 590 MFDPDWNPANDEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
>gi|357631781|gb|EHJ79250.1| steroid receptor-interacting snf2 domain protein [Danaus plexippus]
Length = 764
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 137/547 (25%), Positives = 240/547 (43%), Gaps = 98/547 (17%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F++ + G GCI++ G GKT + L ++
Sbjct: 136 PHQREGVKFMYDCVTGA----------QIDNAYGCIMADEMGLGKTLQCITLLWTLLRQG 185
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P +I+ P S++ W E KW G+ N MD +
Sbjct: 186 PDCKPTICKAIIVCPSSLVKNWYNEIGKW--------------LGQRINALP--MDGGSK 229
Query: 187 GRGKVGLIRYVKLYSW-KMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L +++ ++ ++ T +L +SY R++ ++ E+ GL + DEGH
Sbjct: 230 AEITLKLQQFMNTFAAIRVATPVLIISYETFRIYSNILHASEV--------GLVLCDEGH 281
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL +K +RRI++SGTP QN+ E SLV +L T ++
Sbjct: 282 RLKNSENQTYQALMGLKAKRRILISGTPIQNDLTEY---FSLVHFVNSGILGT----AQD 334
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNV----HKGTVLQESLPGLRHSVV 358
K ++ A ++ +K +E + + VN ++L + LP V+
Sbjct: 335 FKKRYENPILKGQDALATPQERQKAQECLQTLTSIVNKCMIRRTSSLLTKYLPVKFEQVI 394
Query: 359 ILQPDEFQKRLCK------------AVEGVKSFVELNYCVSLLSV---HPSLLPQQFFE- 402
++ Q +L + A G K+ + +++L HP L+ + E
Sbjct: 395 CVKMTPLQTQLYRNFINSDAIKNKFAGTGDKNTLSALSSITMLKKLCNHPDLVYDKIMER 454
Query: 403 -------------SFDVDSAKLARLKLDPEAGIKTRFL-LILLELSTN--EKVLVFSQYI 446
++D+ + PE K L IL L TN +K+++ S Y
Sbjct: 455 SEGFEKGKDLLPSNYDIKDVR-------PEYSGKLMILDCILANLKTNTDDKIVLVSNYT 507
Query: 447 EPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCE 506
+ L L + R R + + +DG +KKR + N S+ I + S+KA
Sbjct: 508 QTLDLFEKLCRKR-----CYQYVRLDGSMTIKKRAKVVESFNSKESKEWIFMLSSKAGGC 562
Query: 507 GINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
G+NL+GA+R+++ D WNP + QA++R +R GQK+ ++Y L+ + T+E +RQA K
Sbjct: 563 GLNLIGANRLIMFDPDWNPANDDQAMARVWRDGQKKPCYIYRLLATGTIEEKIFQRQAHK 622
Query: 567 VWWSNMV 573
S+ V
Sbjct: 623 KALSDTV 629
>gi|388854041|emb|CCF52385.1| probable RAD54-DNA-dependent ATPase of the Snf2p family [Ustilago
hordei]
Length = 865
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 146/537 (27%), Positives = 237/537 (44%), Gaps = 74/537 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ EG +F+++ G I ++N+ GCI++ G GKT + +
Sbjct: 279 KVLRPHQVEGVKFLYRCTTGLI----VENAY------GCIMADEMGLGKTLQCITLMWTL 328
Query: 128 MKLHP--------RCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVA 179
+K P +C +I+ P S++ W E KW G G +A
Sbjct: 329 LKQSPIAGKSTIDKC--IIVCPSSLVRNWANELIKW--------------LGAAAPGNLA 372
Query: 180 LMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFD 239
L + R+ + ++ +SY L +EL + GL + D
Sbjct: 373 LDGKLSKDEMIEATRRWCNASGRAITQPVMIVSYETLRNL--QEELGNTEV---GLLLCD 427
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS 299
EGH +N D+ F+AL++IK RRR+ILSGTP QN+ E L+ E RK+
Sbjct: 428 EGHRLKNADSLTFQALTQIKVRRRVILSGTPIQNDLSEYFALLNFANPELLGSRIDFRKN 487
Query: 300 GR-EISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
I K + + + AN EKL +L ++ F+ +L + LP VV
Sbjct: 488 FEIAILKGRDSEATEKQQQEAN----EKLAQLSALVSRFIIRRTNDLLSKYLPVKYEHVV 543
Query: 359 ILQPDEFQ-------------KRL--------CKAVEGVKSFVELNYCVSLLSVHPSLLP 397
+ FQ K+L KA+ +K N+ L
Sbjct: 544 FCKMAPFQLDLYRLFIRSPEIKKLLRGTGSQPLKAIGILKKLC--NHPDLLDLPSDLDGS 601
Query: 398 QQFF-ESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQL 456
+Q+F E + + +L + + RFL + +TN+K+++ S Y + L + E++
Sbjct: 602 EQYFPEGYTPRDRRHVNPELSGKMMVLQRFLET-IRATTNDKIVLISNYTQTLD-VFERM 659
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
W + +DG + KRQ ++ NDP + I L S+KA G+NL+GA+R+
Sbjct: 660 CQANRW----GMFRLDGTMTINKRQKLVDRFNDPEGKEFIFLLSSKAGGCGLNLIGANRL 715
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
VL D WNP ++QA++R +R GQK+ VY I + ++E L+RQ+ K S+ V
Sbjct: 716 VLFDPDWNPASDQQALARVWRDGQKKSCFVYRFIATGSIEEKILQRQSHKQSLSSCV 772
>gi|410077739|ref|XP_003956451.1| hypothetical protein KAFR_0C03240 [Kazachstania africana CBS 2517]
gi|372463035|emb|CCF57316.1| hypothetical protein KAFR_0C03240 [Kazachstania africana CBS 2517]
Length = 913
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 142/518 (27%), Positives = 226/518 (43%), Gaps = 78/518 (15%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-----VIIAPRSMLLTWEEEFKKW- 155
G GCI++ G GKT + L ++ P+ + +I+ P S++ W E KW
Sbjct: 344 GAYGCIMADEMGLGKTLQCIALLWTLLRQGPQGKGLIDKCIIVCPSSLVNNWANELVKWL 403
Query: 156 --GIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTG------ 207
G P K N +VA IR SW G
Sbjct: 404 GPGTLTPLAIDGKKSSITDAGNASVA------------DAIR-----SWAQAKGRNIVKP 446
Query: 208 ILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILS 267
+L +SY + V + S + GL + DEGH +N D+ F AL I RR+ILS
Sbjct: 447 VLIISYETLRRNVDQLKNSNV-----GLMLADEGHRLKNGDSLTFTALDSINCPRRVILS 501
Query: 268 GTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDE-- 325
GTP QN+ E LS G ++ L GR A D E
Sbjct: 502 GTPIQNDLSEYFALLSFSNPGL---------LGSRAQFRRNYELPILRGRDAEATDKEIK 552
Query: 326 ----KLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQK-------------R 368
+L++L ++ F+ +L + LP V+ + FQK +
Sbjct: 553 KGEGQLEKLSNIVSKFIIRRTNDILSKYLPCKYEHVIFVNLKPFQKSLYQQLLKSRDVKK 612
Query: 369 LCKAVEGVKSFVELNYCVSLLSVHPSLLP-QQFFESFDVDSAKLAR----LKLDPEAGIK 423
L K + G + + L + HP+LL ++ ES D + + R ++ P+ K
Sbjct: 613 LVKGMGGPQPLKAIGLLKKLCN-HPALLDFEKELESADFELPDVFRDLHNREVQPQYSGK 671
Query: 424 TRFL---LILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKR 480
L L + +++K+++ S Y + L LI R R+ V+ +DG + KR
Sbjct: 672 FAILERFLHKINAESDDKIVLISNYTQTLDLIERMCR-----RKQYGVIRLDGTMSINKR 726
Query: 481 QSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQ 540
Q+ ++ NDP Q I L S+KA GINL+GA+R++L+D WNP ++QA++R +R GQ
Sbjct: 727 QTLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQ 786
Query: 541 KRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
K+ +Y I++ T+E +RQ+ K+ S+ V + +
Sbjct: 787 KKDCFIYRFISTGTIEEKIYQRQSMKMSLSSCVVDAKE 824
>gi|328705070|ref|XP_001948023.2| PREDICTED: DNA repair and recombination protein RAD54-like
[Acyrthosiphon pisum]
Length = 751
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 140/544 (25%), Positives = 241/544 (44%), Gaps = 80/544 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+++ + G G GCI++ G GKT + +
Sbjct: 132 KILRPHQREGVKFMYECVTG----------VRIEGAYGCIMADEMGLGKTLQCITLMWTL 181
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
+K P P +I+ P S++ W E KKW L G+ GA+ +
Sbjct: 182 LKQGPDASPTIHKAIIVTPSSLVKNWCNEIKKW-------------LGGRI--GALPVDG 226
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
K KV + +V+ + IL +SY F S + + + GL + DEGH
Sbjct: 227 GGKEQVDKV-ITGFVQARGRRTVDPILVISYETFRSHASLLQNAEDI----GLVLCDEGH 281
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + +++L +K +RR++LSGTP QN+ E + + V + + + +E
Sbjct: 282 RLKNCENQTYRSLMALKAKRRVLLSGTPIQNDLLEYFSLVHFVNE-------GILGTAQE 334
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNV----HKGTVLQESLPGLRHSVV 358
+ ++ CA + +K E E++ VN +L + LP VV
Sbjct: 335 FRRQYETPIVRGQDSCATDSERKKAAERLEQLISLVNRCLIRRTSALLSKYLPVKTEHVV 394
Query: 359 ILQPDEFQKRL----------CKAVEGVKSFVELNYCVSL-----LSVHPSLLPQQFFES 403
++ Q L K+++G V N ++ L HP L+ +
Sbjct: 395 CIKLTPLQTDLYLHLLKSDMVTKSIKGNDGKVTSNALAAITLLKKLCAHPDLIIDKIMNG 454
Query: 404 FD-----------VDSAKLARLKLDPEAGIKTRFL---LILLELSTNEKVLVFSQYIEPL 449
D A ++ KL E K L L +++ +T ++V++ S Y + L
Sbjct: 455 SDGFENSKHLLPPTYIAAHSKKKLMIELSSKLMVLDTMLAVIKTTTTDRVVLISNYTQTL 514
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509
L E+L N+ + +DG KKR +++ +N P+S + + S+KA G+N
Sbjct: 515 EL-FERLAKLRNY----TFVRLDGSMTAKKRAKAVDDINSPTSGVFLFMLSSKAGGCGLN 569
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
L+GA+R+V+ D WNP + QA++R +R GQK+ VY + + ++E ++RQA K
Sbjct: 570 LIGANRLVMFDPDWNPANDDQAMARVWRDGQKKPCFVYRFLATGSIEEKMMQRQAHKKAL 629
Query: 570 SNMV 573
S+ V
Sbjct: 630 SSSV 633
>gi|340520664|gb|EGR50900.1| predicted protein [Trichoderma reesei QM6a]
Length = 1846
Score = 156 bits (395), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 147/575 (25%), Positives = 235/575 (40%), Gaps = 118/575 (20%)
Query: 52 THAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHA 111
T G + V ++ K++ HQ G F+W I +D + + GC+++H
Sbjct: 858 TKQDGQSFIYVNEEIGKRIKDHQINGVRFLWNQII--VDAETRQ---------GCLLAHT 906
Query: 112 PGTGKTGLTLVFLQAYMKLHP---------------RCRPVIIAPRSMLLTWEEEFKKWG 156
G GKT + FL A ++ + + VI+ P ++ W +E W
Sbjct: 907 MGLGKTMQVITFLVAVLEAANSHDESIRAQIPKDLRKSQTVILCPAGLVDNWLDEILMWS 966
Query: 157 IDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLF 216
N+ K E + K + IR + W+ G+L L + +F
Sbjct: 967 PRGLLGNVVKYESALKGD------------------AIRLAVIKDWERNGGVLVLGHTMF 1008
Query: 217 EKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQ 276
L + + IL L + DE H ++ ++ + +A +TR RI L+G+P NN Q
Sbjct: 1009 WNLDTN--VRQILTGAANLVICDEAHAMKSAESLLHRACQEFRTRSRIALTGSPLSNNVQ 1066
Query: 277 ELENTLSLVR-------QEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKE 329
E + ++ V QEF ++ T + G L R + L+
Sbjct: 1067 EYYSMINWVAPNFLGPIQEFRDIYATPIEHG----------LWKDSSGYDKRRALKLLEV 1116
Query: 330 LKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRL--------CKAVEGVKS--- 378
LK +AP V V++ LP V+ ++ QKRL +E KS
Sbjct: 1117 LKMNVAPKVQRATTQVVRHELPAKYEFVIFVEATPLQKRLYDIYLNEMASTLENAKSKKV 1176
Query: 379 --FVELNYCVSLLSVHPSLLPQQFFESF----------------DVDSAKLARLKL---- 416
+ + ++L+ HP Q+ E+ D D A +A
Sbjct: 1177 MRVIGASQHLALICNHPRCFRQKVVEASRASAAPQPRGRGRKDDDEDGASVAAAAFPQSM 1236
Query: 417 -------------DPEAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLIMEQLRHRFN 461
+P K LL++L+ + +KVLVFS I L + E +
Sbjct: 1237 ISAVLKETIGDIANPTLSRKVELLLMILDEARAVKDKVLVFSHSILTLDYLGELFK---- 1292
Query: 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDV 521
++G+ V +DG V KRQ I N S+ I L ST+A G+N+ GA+RVV+ D
Sbjct: 1293 -QQGRAVCRLDGSTAVAKRQEQIKAFNTGDSE--IYLISTRAGGVGLNIYGANRVVIFDF 1349
Query: 522 VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
WNP E+QA+ RAYR GQ++ V+VY +TS E
Sbjct: 1350 RWNPVSEQQAVGRAYRFGQEKTVYVYQFVTSGAFE 1384
>gi|453084606|gb|EMF12650.1| DNA repair and recombination protein RAD54 [Mycosphaerella
populorum SO2202]
Length = 714
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 144/556 (25%), Positives = 241/556 (43%), Gaps = 89/556 (16%)
Query: 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLV 122
PR + K + PHQ EG +F+++ G ID GCI++ G GKT +
Sbjct: 116 PR-LAKVLRPHQVEGVKFLYRCTTGLID----------ANAEGCIMADEMGLGKTLQCIT 164
Query: 123 FLQAYMKLHPRC------RPVIIAPRSMLLTWEEEFKKW---GIDIPFYNLNKPELSGKE 173
+ +K P + +I P S++ W E KW G PF + GK
Sbjct: 165 LMWTLLKQSPDAGKSTIQKCIIACPASLVRNWANELVKWLGEGAIEPF------AVDGKA 218
Query: 174 NNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLSYRLFEKLVSGDELSG 227
+ + ++ +W +G +L +SY V DEL
Sbjct: 219 SKEQMT-----------------QQMRAWASASGRAVVRPVLIISYETLRLYV--DELRN 259
Query: 228 ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
+ GL + DEGH +N ++ + AL+ + ++R+ILSGTP QN+ E + L+
Sbjct: 260 TPI---GLMLCDEGHRLKNSESQTYMALAGLNVKKRVILSGTPIQNDLSEYFSLLNFANP 316
Query: 288 EFGEVLRTVRKSGRE-ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVL 346
+ RK I + + A + + DE+LKEL + F+ +L
Sbjct: 317 GYLGTQADFRKQFENPILRGRDADGTEA----DRQKGDERLKELLTLVNKFIIRRTNDIL 372
Query: 347 QESLPGLRHSVVILQPDEFQKRL----CKAVEGVKSFVELNYCVSLLSV--------HPS 394
+ LP VV FQ L K+ E ++S + L ++ HP
Sbjct: 373 SKYLPVKYEHVVFCNLAPFQLDLYNYFIKSPE-IQSLLRGKGSQPLKAIGLLKKLCNHPD 431
Query: 395 LL---------PQQFFESFDVDSAKLARLKLDPEAGIKTRFL---LILLELSTNEKVLVF 442
LL + F E + + +++P K + L L + + +N+K+++
Sbjct: 432 LLNLPDDLPGSEEHFPEEYVPKDQRGRDREVNPVYSGKMQVLDRMLARIRMDSNDKIVLI 491
Query: 443 SQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTK 502
S Y + L + + R R L +DG +V KRQ ++ NDP+ + L S+K
Sbjct: 492 SNYTQTLDVFEKLCRSR-----SYGCLRLDGTMNVNKRQKLVDKFNDPNGAEFVFLLSSK 546
Query: 503 ACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRR 562
A G+NL+GA+R++L D WNP ++QA++R +R GQK+ VY + + T+E +R
Sbjct: 547 AGGCGLNLIGANRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFMAAGTIEEKIFQR 606
Query: 563 QARKVWWSNMVFPSSD 578
Q+ K S+ V S++
Sbjct: 607 QSHKQALSSCVVDSAE 622
>gi|328768836|gb|EGF78881.1| hypothetical protein BATDEDRAFT_12619 [Batrachochytrium
dendrobatidis JAM81]
Length = 680
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 148/543 (27%), Positives = 238/543 (43%), Gaps = 100/543 (18%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ EG +F++ G G GCI++ G GKT + L ++
Sbjct: 91 PHQIEGVQFLYNCTTG----------EQVAGAFGCIMADEMGLGKTLQCIALLWTLLRQS 140
Query: 132 PRC------RPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNK--PELSGKENNGAVAL 180
P + +I P S++ W E KKW + P+ NK E + K+ VA
Sbjct: 141 PIPGKPWIEKAIIACPSSLVKNWANELKKWLGENRVRPYSCDNKGTKEQTTKDIEQFVA- 199
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
+GRG ++ V + S++ + R++ ++ E+ GL + DE
Sbjct: 200 ----AKGRG---VVNPVLIVSYE--------TLRIYTPILVKTEI--------GLLLCDE 236
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
GH +N D+ + +L+++K +RR+ILSGTP QN+ E + LS +VL G
Sbjct: 237 GHRLKNGDSLTYTSLNQLKAKRRVILSGTPIQNDLTEYFSLLSFA---IPDVL------G 287
Query: 301 REISKAKHASLISSIGRCANHRD------DEKLKELKEKIAPFVNVHKGTVLQESLPGLR 354
E K L GR A+ D +E+L EL F+ +L + LP
Sbjct: 288 SEADFRKKFELPILRGRDADASDKDRKTSEERLGELLTTANKFIIRRTAELLTKYLPVKY 347
Query: 355 HSVVILQPDEFQKRLC---------------------KAVEGVKSFVELNYCVSLLSVHP 393
VV + E Q + KA+ +K V ++ +
Sbjct: 348 EYVVFCKLSEMQATIYRHFSKQEMNKLAAKERGEKPEKAITTLKKLVNHPILLNRDDMED 407
Query: 394 SLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFL---LILLELSTNEKVLVFSQYIEPLT 450
S +P++F SF + PE K L L + +++K+++ S Y + L
Sbjct: 408 SWIPKEF--SFK---------ECQPEYSGKMYLLERMLCQMHAQSSDKIVLISNYTQTLD 456
Query: 451 LIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINL 510
I + R R W ++ +DG ++KRQ ++ NDP+ I L S+KA GINL
Sbjct: 457 AIEKMCRVR-KW----QLCRLDGTMTIQKRQKLVDRFNDPTQPEFIFLLSSKAGGCGINL 511
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS 570
+GA+R++L D WNP + QA++R +R GQ +V +Y I + T+E +RQA K S
Sbjct: 512 IGANRLILTDPDWNPANDAQALARVWRDGQTKVCFIYRFIATGTIEEKIFQRQAHKQSLS 571
Query: 571 NMV 573
+ V
Sbjct: 572 SCV 574
>gi|328863054|gb|EGG12154.1| hypothetical protein MELLADRAFT_76598 [Melampsora larici-populina
98AG31]
Length = 823
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 150/554 (27%), Positives = 246/554 (44%), Gaps = 97/554 (17%)
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
L PR + K + PHQ EG +F+++ G ++ G +GCI++ G GKT
Sbjct: 233 LDPR-LTKTLRPHQVEGVKFLYRCTTGMVE----------KGVHGCIMADEMGLGKTLQC 281
Query: 121 LVFLQAYMKLHPRC------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKEN 174
+ L +K P + ++ P S++ W E KW
Sbjct: 282 ITLLWTLLKQSPIPGKPAINKAIVACPSSLVKNWANELDKW------------------- 322
Query: 175 NGAVALMDNRKRGR-GKVGLIRYVKLYSWKMGTGILGLSYRLFEK--LVSGDELSGILLD 231
GA AL+ G+ K L++ V+ W + G R+ + +VS + L G L++
Sbjct: 323 LGAGALVPLAVDGKQSKADLLKSVR--QWVLADG-----RRVSQPVMIVSYETLRGSLVE 375
Query: 232 ----LP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR 286
P GL + DEGH +N + + AL+ IK +R+IL+GTP QN+ E L+
Sbjct: 376 ELGTAPIGLLLCDEGHRLKNAENQTYAALNSIKCEKRVILTGTPIQNDLSEYFALLNFAN 435
Query: 287 QEFGEVLRTVRKS-------GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVN 339
+ RK+ GR+ ++ ++ + KLKEL K+ F+
Sbjct: 436 PNYLGDRAQFRKNYELPILRGRDSDSSQSEVTLA----------ETKLKELTTKVQKFII 485
Query: 340 VHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV---EGVKSFVELNYCVSL-------- 388
+L + LP VV P FQ+ L + +K + C L
Sbjct: 486 RRTNDLLSKYLPVKYEHVVFCAPSTFQRDLYRHFINSPDLKKLLRGVGCQPLKMLGILRK 545
Query: 389 LSVHPSLL---------PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKV 439
L HP LL + F E + ++K +R PE K +L + T +K+
Sbjct: 546 LCNHPDLLDLHQDIPGSEKCFPEGY---TSKDSRAPARPELSGKM-VVLERIRTQTTDKI 601
Query: 440 LVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
++ S + + L +ME++ W L +DG + KRQ ++ N+P + I L
Sbjct: 602 VLISNFTQTLD-VMEKMCRERRW----GCLRLDGTMQITKRQKLVDRFNNPEGKEFIFLL 656
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
S+KA GINL+GA+R++L D WNP ++QA++R +R GQK+ VY I + ++E
Sbjct: 657 SSKAGGCGINLIGANRLILFDPDWNPASDQQALARVWRDGQKKECFVYRFILTGSVEEKV 716
Query: 560 LRRQARKVWWSNMV 573
+RQ++K+ S V
Sbjct: 717 FQRQSQKMKLSASV 730
>gi|365765783|gb|EHN07289.1| Rad54p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 898
Score = 156 bits (394), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 144/577 (24%), Positives = 246/577 (42%), Gaps = 102/577 (17%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDEL------------------------KNSTSTGGG 103
K + PHQ EG F+++ + G + D L K + + G
Sbjct: 269 KILRPHQVEGVRFLYRCVTGLVMKDYLEAEAFNTSSEDPLKSDEKALTESQKTAQNNRGA 328
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR-----PVIIAPRSMLLTWEEEFKKWGID 158
GCI++ G GKT + + ++ P+ + +I+ P S++ W E KW
Sbjct: 329 YGCIMADEMGLGKTLQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNWANELIKWL-- 386
Query: 159 IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLS 212
N +D +K G +++W G +L +S
Sbjct: 387 -------------GPNTLTPLAVDGKKSSMGGGNTTVSQAIHAWAQAQGRNIVKPVLIIS 433
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y + V D+L + GL + DEGH +N D+ F AL I RR+ILSGTP Q
Sbjct: 434 YETLRRNV--DQLKNCNV---GLMLADEGHRLKNGDSLTFTALDSISCPRRVILSGTPIQ 488
Query: 273 NNFQELENTLSLV-------RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDE 325
N+ E LS R EF + GR+ + A + + +
Sbjct: 489 NDLSEYFALLSFSNPGLLGSRAEFRKNFENPILRGRD-ADATDKEIT---------KGEA 538
Query: 326 KLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI--LQP--DEFQKRLCKAVEGVKSFVE 381
+L++L ++ F+ +L + LP V+ L+P +E +L K+ E K
Sbjct: 539 QLQKLSTIVSKFIIRRTNDILAKYLPCKYEHVIFVNLKPLQNELYNKLIKSREVKKVVKG 598
Query: 382 LNYCVSLLSV--------HPSLLPQQFFE------------SFDVDSAKLARLKLDPEAG 421
+ L ++ HP+LL + + A+ + K +
Sbjct: 599 VGGSQPLRAIGILKKLCNHPNLLNFEDEFDDEDDLELPDDYNMPGSKARDVQTKYSAKFS 658
Query: 422 IKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQ 481
I RFL ++ +++K+++ S Y + L LI + R++ + +DG + KRQ
Sbjct: 659 ILERFLH-KIKTESDDKIVLISNYTQTLDLIEKMCRYKH-----YSAVRLDGTMSINKRQ 712
Query: 482 SSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQK 541
++ NDP Q I L S+KA GINL+GA+R++L+D WNP ++QA++R +R GQK
Sbjct: 713 KLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQK 772
Query: 542 RVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
+ +Y I++ T+E +RQ+ K+ S+ V + +
Sbjct: 773 KDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDAKE 809
>gi|355745253|gb|EHH49878.1| hypothetical protein EGM_00608 [Macaca fascicularis]
Length = 753
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 139/546 (25%), Positives = 238/546 (43%), Gaps = 85/546 (15%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W+ + S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVKFLWECV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P ++++P S++ W E KW L G+ A+ D
Sbjct: 201 LRQSPECKPEIDKAMVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 244
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 245 GGSKDEIDQKLEGFMNQRGARVPSPILIISYETFRLHVGVLQKGSV-----GLVICDEGH 299
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T E
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGT----AHE 352
Query: 303 ISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ A+ D +E+L+EL + + +L + LP VV
Sbjct: 353 FKKHFELPILKGRDAAASEADRKLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVV 412
Query: 359 I--LQP--DEFQKRLCKAVEGVKSFVE---------LNYCVSLLSVHPSLLPQQ------ 399
L P E KR + + + E + L HP+L+ +
Sbjct: 413 CCRLTPLQTELYKRFLRQAKPAEELREGKMSVSSLSSITSLKKLCNHPALIHDKCVEEED 472
Query: 400 -FFESFDVDSAKLARLKLDPEAG---------IKTRFLLILLELSTNEKVLVFSQYIEPL 449
F + D+ + L+P+ + ++L + +++KV++ S Y + L
Sbjct: 473 GFVGALDLFPPGYSSKALEPQLSGDPFPTSKMLVLDYILAVTRSCSSDKVVLVSNYTQTL 532
Query: 450 TLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEG 507
L + R R LY +DG +KKR + N PSS + + S+KA G
Sbjct: 533 DLFEKLCRAR-------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCG 585
Query: 508 INLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567
+NL+GA+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K
Sbjct: 586 LNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKK 645
Query: 568 WWSNMV 573
S+ V
Sbjct: 646 ALSSCV 651
>gi|322707957|gb|EFY99534.1| recombinational repair protein [Metarhizium anisopliae ARSEF 23]
Length = 807
Score = 155 bits (393), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 150/565 (26%), Positives = 237/565 (41%), Gaps = 84/565 (14%)
Query: 52 THAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHA 111
T Q V ++ + K + PHQ EG +F+++ + G I+ NGCI++
Sbjct: 200 TKEQPQVPVVLDPKLAKILRPHQVEGVKFMYRCVTGMIE----------EKANGCIMADE 249
Query: 112 PGTGKTGLTLVFLQAYMKLHPRC------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLN 165
G GKT + + +K P + +++ P S++ W E KW
Sbjct: 250 MGLGKTLQCITLMWTLLKQSPEAGKPTIQKAIVVCPASLVKNWANELTKWL--------- 300
Query: 166 KPELSGKENNGAVALMDNRKRGRG-KVGLIRYVKLYSWKMGTG------ILGLSYRLFEK 218
GA A+ G+ K L R +L W + +G ++ +SY
Sbjct: 301 ----------GANAITPFAIDGKASKEELTR--QLRQWAIASGRSVTRPVIIVSYETLR- 347
Query: 219 LVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
++ +EL + GL DEGH +N D+ F AL+ + RR+IL+GTP QN+ E
Sbjct: 348 -LNVEELKHTKI---GLLFCDEGHRLKNSDSNTFNALNSLDVSRRVILTGTPIQNDLTEY 403
Query: 279 ENTLSLVRQE-FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPF 337
+ S + G L ++ I + + A S R D EL + F
Sbjct: 404 FSLTSFANPDLLGSRLEFRKRFEIPILRGRDADASES----DRQRGDVCTAELLGIVNKF 459
Query: 338 VNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV------------EGVKSFVELNYC 385
+ +L + LP VV FQ+ L +G + +N
Sbjct: 460 LIRRTNDILSKYLPVKYEHVVFCGVSPFQESLYNYFITSPDIQALLRGKGSQPLKAINIL 519
Query: 386 VSLLSVHPSLLPQQ---------FFESFDVDSAKLARLKLDPEAGIKTRFL---LILLEL 433
L + HP LL F + A+ + PE K L L +
Sbjct: 520 KKLCN-HPDLLNLSDDLPGSECCFPPEYIPKEARGRDRDVRPEYSGKMMVLDRMLARIRQ 578
Query: 434 STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQ 493
TN+K+++ S Y L L R R L +DG +V KRQ ++ NDP+ +
Sbjct: 579 DTNDKIVLISNYTSTLDLFERLCRSR-----EYGCLRLDGTMNVNKRQKLVDRFNDPNGE 633
Query: 494 ARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553
+ L S+KA GINL+GA+R+VL D WNP ++QA++R +R GQK+ VY I +
Sbjct: 634 EFVFLLSSKAGGCGINLIGANRLVLFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATG 693
Query: 554 TLEWDKLRRQARKVWWSNMVFPSSD 578
T+E +RQ+ K S+ V S++
Sbjct: 694 TIEEKIFQRQSHKQSLSSCVVDSAE 718
>gi|151943650|gb|EDN61960.1| radiation sensitive protein [Saccharomyces cerevisiae YJM789]
Length = 898
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 145/584 (24%), Positives = 245/584 (41%), Gaps = 116/584 (19%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDEL------------------------KNSTSTGGG 103
K + PHQ EG F+++ + G + D L K + G
Sbjct: 269 KILRPHQVEGVRFLYRCVTGLVMKDYLEAEAFNTSSEDPLKSDEKALTESQKTEQNNRGA 328
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR-----PVIIAPRSMLLTWEEEFKKWGID 158
GCI++ G GKT + + ++ P+ + +I+ P S++ W E KW
Sbjct: 329 YGCIMADEMGLGKTLQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNWANELIKWL-- 386
Query: 159 IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLS 212
N +D +K G +++W G +L +S
Sbjct: 387 -------------GPNTLTPLAVDGKKSSMGGGNTTVSQAIHAWAQAQGRNIVKPVLIIS 433
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y + V D+L + GL + DEGH +N D+ F AL I RR+ILSGTP Q
Sbjct: 434 YETLRRNV--DQLKNCNV---GLMLADEGHRLKNGDSLTFTALDSISCPRRVILSGTPIQ 488
Query: 273 NNFQELENTLSLV-------RQEFGEVL-------RTVRKSGREISKAKHASLISSIGRC 318
N+ E LS R EF + R + +EI+K
Sbjct: 489 NDLSEYFALLSFSNPGLLGSRAEFRKNFENPILRGRDADATDKEITKG------------ 536
Query: 319 ANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI--LQP--DEFQKRLCKAVE 374
+ +L++L ++ F+ +L + LP V+ L+P +E +L K+ E
Sbjct: 537 -----EAQLQKLSTVVSKFIIRRTNDILAKYLPCKYEHVIFVNLKPLQNELYNKLIKSRE 591
Query: 375 GVKSFVELNYCVSLLSV--------HPSLLPQQFFE------------SFDVDSAKLARL 414
K + L ++ HP+LL + + A+ +
Sbjct: 592 VKKVVKGVGGSQPLRAIGILKKLCNHPNLLNFEDEFDDEDDLELPDDYNMPGSKARDVQT 651
Query: 415 KLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGK 474
K + I RFL ++ +++K+++ S Y + L LI + R++ + +DG
Sbjct: 652 KYSAKFSILERFLH-KIKTESDDKIVLISNYTQTLDLIEKMCRYKH-----YSAVRLDGT 705
Query: 475 QDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISR 534
+ KRQ ++ NDP Q I L S+KA GINL+GA+R++L+D WNP ++QA++R
Sbjct: 706 MSINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALAR 765
Query: 535 AYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
+R GQK+ +Y I++ T+E +RQ+ K+ S+ V + +
Sbjct: 766 VWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDAKE 809
>gi|349578068|dbj|GAA23234.1| K7_Rad54p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 898
Score = 155 bits (392), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 145/584 (24%), Positives = 245/584 (41%), Gaps = 116/584 (19%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDEL------------------------KNSTSTGGG 103
K + PHQ EG F+++ + G + D L K + G
Sbjct: 269 KILRPHQVEGVRFLYRCVTGLVMKDYLEAEAFNTSSEDPLKSDEKALTESQKTEQNNRGA 328
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR-----PVIIAPRSMLLTWEEEFKKWGID 158
GCI++ G GKT + + ++ P+ + +I+ P S++ W E KW
Sbjct: 329 YGCIMADEMGLGKTLQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNWANELIKWL-- 386
Query: 159 IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLS 212
N +D +K G +++W G +L +S
Sbjct: 387 -------------GPNTLTPLAVDGKKSSMGGGNTTVSQAIHAWAQAQGRNIVKPVLIIS 433
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y + V D+L + GL + DEGH +N D+ F AL I RR+ILSGTP Q
Sbjct: 434 YETLRRNV--DQLKNCNV---GLMLADEGHRLKNGDSLTFTALDSISCPRRVILSGTPIQ 488
Query: 273 NNFQELENTLSLV-------RQEFGEVL-------RTVRKSGREISKAKHASLISSIGRC 318
N+ E LS R EF + R + +EI+K
Sbjct: 489 NDLSEYFALLSFSNPGLLGSRAEFRKNFENPILRGRDADATDKEIAKG------------ 536
Query: 319 ANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI--LQP--DEFQKRLCKAVE 374
+ +L++L ++ F+ +L + LP V+ L+P +E +L K+ E
Sbjct: 537 -----EAQLQKLSTIVSKFIIRRTNDILAKYLPCKYEHVIFVNLKPLQNELYNKLIKSRE 591
Query: 375 GVKSFVELNYCVSLLSV--------HPSLLPQQFFE------------SFDVDSAKLARL 414
K + L ++ HP+LL + + A+ +
Sbjct: 592 VKKVVKGVGGSQPLRAIGILKKLCNHPNLLNFEDEFDDEDDLDLPDDYNMPGSKARDVQT 651
Query: 415 KLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGK 474
K + I RFL ++ +++K+++ S Y + L LI + R++ + +DG
Sbjct: 652 KYSAKFSILERFLH-KIKTESDDKIVLISNYTQTLDLIEKMCRYKH-----YSAVRLDGT 705
Query: 475 QDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISR 534
+ KRQ ++ NDP Q I L S+KA GINL+GA+R++L+D WNP ++QA++R
Sbjct: 706 MSINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALAR 765
Query: 535 AYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
+R GQK+ +Y I++ T+E +RQ+ K+ S+ V + +
Sbjct: 766 VWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDAKE 809
>gi|6321275|ref|NP_011352.1| DNA-dependent ATPase RAD54 [Saccharomyces cerevisiae S288c]
gi|417577|sp|P32863.1|RAD54_YEAST RecName: Full=DNA repair and recombination protein RAD54
gi|172343|gb|AAA34949.1| recombination and repair protein [Saccharomyces cerevisiae]
gi|728692|emb|CAA88534.1| RAD54 [Saccharomyces cerevisiae]
gi|1322760|emb|CAA96875.1| RAD54 [Saccharomyces cerevisiae]
gi|285812049|tpg|DAA07949.1| TPA: DNA-dependent ATPase RAD54 [Saccharomyces cerevisiae S288c]
gi|392299585|gb|EIW10679.1| Rad54p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 898
Score = 155 bits (392), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 144/577 (24%), Positives = 245/577 (42%), Gaps = 102/577 (17%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDEL------------------------KNSTSTGGG 103
K + PHQ EG F+++ + G + D L K + G
Sbjct: 269 KILRPHQVEGVRFLYRCVTGLVMKDYLEAEAFNTSSEDPLKSDEKALTESQKTEQNNRGA 328
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR-----PVIIAPRSMLLTWEEEFKKWGID 158
GCI++ G GKT + + ++ P+ + +I+ P S++ W E KW
Sbjct: 329 YGCIMADEMGLGKTLQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNWANELIKWL-- 386
Query: 159 IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLS 212
N +D +K G +++W G +L +S
Sbjct: 387 -------------GPNTLTPLAVDGKKSSMGGGNTTVSQAIHAWAQAQGRNIVKPVLIIS 433
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y + V D+L + GL + DEGH +N D+ F AL I RR+ILSGTP Q
Sbjct: 434 YETLRRNV--DQLKNCNV---GLMLADEGHRLKNGDSLTFTALDSISCPRRVILSGTPIQ 488
Query: 273 NNFQELENTLSLV-------RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDE 325
N+ E LS R EF + GR+ + A + + +
Sbjct: 489 NDLSEYFALLSFSNPGLLGSRAEFRKNFENPILRGRD-ADATDKEIT---------KGEA 538
Query: 326 KLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI--LQP--DEFQKRLCKAVEGVKSFVE 381
+L++L ++ F+ +L + LP V+ L+P +E +L K+ E K
Sbjct: 539 QLQKLSTIVSKFIIRRTNDILAKYLPCKYEHVIFVNLKPLQNELYNKLIKSREVKKVVKG 598
Query: 382 LNYCVSLLSV--------HPSLLPQQFFE------------SFDVDSAKLARLKLDPEAG 421
+ L ++ HP+LL + + A+ + K +
Sbjct: 599 VGGSQPLRAIGILKKLCNHPNLLNFEDEFDDEDDLELPDDYNMPGSKARDVQTKYSAKFS 658
Query: 422 IKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQ 481
I RFL ++ +++K+++ S Y + L LI + R++ + +DG + KRQ
Sbjct: 659 ILERFLH-KIKTESDDKIVLISNYTQTLDLIEKMCRYKH-----YSAVRLDGTMSINKRQ 712
Query: 482 SSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQK 541
++ NDP Q I L S+KA GINL+GA+R++L+D WNP ++QA++R +R GQK
Sbjct: 713 KLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQK 772
Query: 542 RVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
+ +Y I++ T+E +RQ+ K+ S+ V + +
Sbjct: 773 KDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDAKE 809
>gi|190407107|gb|EDV10374.1| DNA repair and recombination protein RAD54 [Saccharomyces
cerevisiae RM11-1a]
Length = 898
Score = 155 bits (392), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 144/577 (24%), Positives = 245/577 (42%), Gaps = 102/577 (17%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDEL------------------------KNSTSTGGG 103
K + PHQ EG F+++ + G + D L K + G
Sbjct: 269 KILRPHQVEGVRFLYRCVTGLVMKDYLEAEAFNTSSEDPLKSDEKALTESQKTEQNNRGA 328
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR-----PVIIAPRSMLLTWEEEFKKWGID 158
GCI++ G GKT + + ++ P+ + +I+ P S++ W E KW
Sbjct: 329 YGCIMADEMGLGKTLQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNWANELIKWL-- 386
Query: 159 IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLS 212
N +D +K G +++W G +L +S
Sbjct: 387 -------------GPNTLTPLAVDGKKSSMGGGNTTVSQAIHAWAQAQGRNIVKPVLIIS 433
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y + V D+L + GL + DEGH +N D+ F AL I RR+ILSGTP Q
Sbjct: 434 YETLRRNV--DQLKNCNV---GLMLADEGHRLKNGDSLTFTALDSISCPRRVILSGTPIQ 488
Query: 273 NNFQELENTLSLV-------RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDE 325
N+ E LS R EF + GR+ + A + + +
Sbjct: 489 NDLSEYFALLSFSNPGLLGSRAEFRKNFENPILRGRD-ADATDKEIT---------KGEA 538
Query: 326 KLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI--LQP--DEFQKRLCKAVEGVKSFVE 381
+L++L ++ F+ +L + LP V+ L+P +E +L K+ E K
Sbjct: 539 QLQKLSTIVSKFIIRRTNDILAKYLPCKYEHVIFVNLKPLQNELYNKLIKSREVKKVVKG 598
Query: 382 LNYCVSLLSV--------HPSLLPQQFFE------------SFDVDSAKLARLKLDPEAG 421
+ L ++ HP+LL + + A+ + K +
Sbjct: 599 VGGSQPLRAIGILKKLCNHPNLLNFEDEFDDEDDLELPDDYNMPGSKARDVQTKYSAKFS 658
Query: 422 IKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQ 481
I RFL ++ +++K+++ S Y + L LI + R++ + +DG + KRQ
Sbjct: 659 ILERFLH-KIKTESDDKIVLISNYTQTLDLIEKMCRYKH-----YSAVRLDGTMSINKRQ 712
Query: 482 SSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQK 541
++ NDP Q I L S+KA GINL+GA+R++L+D WNP ++QA++R +R GQK
Sbjct: 713 KLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQK 772
Query: 542 RVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
+ +Y I++ T+E +RQ+ K+ S+ V + +
Sbjct: 773 KDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDAKE 809
>gi|256272233|gb|EEU07224.1| Rad54p [Saccharomyces cerevisiae JAY291]
gi|259146347|emb|CAY79604.1| Rad54p [Saccharomyces cerevisiae EC1118]
Length = 898
Score = 155 bits (391), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 144/577 (24%), Positives = 245/577 (42%), Gaps = 102/577 (17%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDEL------------------------KNSTSTGGG 103
K + PHQ EG F+++ + G + D L K + G
Sbjct: 269 KILRPHQVEGVRFLYRCVTGLVMKDYLEAEAFNTSSEDPLKSDEKALTESQKTEQNNRGA 328
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR-----PVIIAPRSMLLTWEEEFKKWGID 158
GCI++ G GKT + + ++ P+ + +I+ P S++ W E KW
Sbjct: 329 YGCIMADEMGLGKTLQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNWANELIKWL-- 386
Query: 159 IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLS 212
N +D +K G +++W G +L +S
Sbjct: 387 -------------GPNTLTPLAVDGKKSSMGGGNTTVSQAIHAWAQAQGRNIVKPVLIIS 433
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y + V D+L + GL + DEGH +N D+ F AL I RR+ILSGTP Q
Sbjct: 434 YETLRRNV--DQLKNCNV---GLMLADEGHRLKNGDSLTFTALDSISCPRRVILSGTPIQ 488
Query: 273 NNFQELENTLSLV-------RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDE 325
N+ E LS R EF + GR+ + A + + +
Sbjct: 489 NDLSEYFALLSFSNPGLLGSRAEFRKNFENPILRGRD-ADATDKEIT---------KGEA 538
Query: 326 KLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI--LQP--DEFQKRLCKAVEGVKSFVE 381
+L++L ++ F+ +L + LP V+ L+P +E +L K+ E K
Sbjct: 539 QLQKLSTIVSKFIIRRTNDILAKYLPCKYEHVIFVNLKPLQNELYNKLIKSREVKKVVKG 598
Query: 382 LNYCVSLLSV--------HPSLLPQQFFE------------SFDVDSAKLARLKLDPEAG 421
+ L ++ HP+LL + + A+ + K +
Sbjct: 599 VGGSQPLRAIGILKKLCNHPNLLNFEDEFDDEDDLELPDDYNMPGSKARDVQTKYSAKFS 658
Query: 422 IKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQ 481
I RFL ++ +++K+++ S Y + L LI + R++ + +DG + KRQ
Sbjct: 659 ILERFLH-KIKTESDDKIVLISNYTQTLDLIEKMCRYKH-----YSAVRLDGTMSINKRQ 712
Query: 482 SSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQK 541
++ NDP Q I L S+KA GINL+GA+R++L+D WNP ++QA++R +R GQK
Sbjct: 713 KLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQK 772
Query: 542 RVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
+ +Y I++ T+E +RQ+ K+ S+ V + +
Sbjct: 773 KDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDAKE 809
>gi|156845511|ref|XP_001645646.1| hypothetical protein Kpol_541p31 [Vanderwaltozyma polyspora DSM
70294]
gi|156116312|gb|EDO17788.1| hypothetical protein Kpol_541p31 [Vanderwaltozyma polyspora DSM
70294]
Length = 941
Score = 155 bits (391), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 144/522 (27%), Positives = 226/522 (43%), Gaps = 87/522 (16%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-----VIIAPRSMLLTWEEEFKKWG 156
G GCI++ G GKT + + +K P+ + +I+ P S++ W E KW
Sbjct: 373 GAYGCIMADEMGLGKTLQCIALMWTLLKQGPQGKSLIDKCIIVCPSSLVNNWANELIKW- 431
Query: 157 IDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTG------ILG 210
L LS +G + + N G + +K SW G +L
Sbjct: 432 -------LGPGTLSPLAIDGKKSSITNG----GNATVAHAIK--SWAQAKGRNIVKPVLI 478
Query: 211 LSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTP 270
+SY + V D+L + GL + DEGH +N D+ F AL I RRIILSGTP
Sbjct: 479 ISYETLRRNV--DQLVNCDV---GLMLADEGHRLKNADSLTFTALDSINCPRRIILSGTP 533
Query: 271 FQNNFQELENTLSLV-------RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRD 323
QN+ E L+ R EF +GRE A S++
Sbjct: 534 IQNDLSEYFALLNFSNPGLLGSRSEFRRNFEIPILAGREADATDEALKKSTL-------- 585
Query: 324 DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN 383
+L++L E ++ F+ +L + LP V+ + FQ+ L KS++EL
Sbjct: 586 --QLQKLSEVVSKFIIRRTNDILSKYLPCKYEHVIFVNMKPFQRDL------YKSYIELR 637
Query: 384 YCVSL------------LSVHPSLL---------------PQQFFESFDVDSAKLARLKL 416
S L HP LL P + S + S K + +
Sbjct: 638 KDDSFEKPLKAIGVLKKLCNHPDLLDLESELPEMGDSVSIPDGYVISKNGKS-KDVQPQF 696
Query: 417 DPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQD 476
+ I RFL + +++K+++ S Y + L L+ R R+ + +DG
Sbjct: 697 SGKFAILERFLH-KINTESDDKIVLISNYTQTLDLV-----ERLCRRKQYGSVRLDGSMT 750
Query: 477 VKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAY 536
+ KRQ ++ N P S I L S+KA GINL+GA+R++LLD WNP ++QA++R +
Sbjct: 751 INKRQKLVDRFNSPDSHEFIFLLSSKAGGCGINLIGANRLILLDPDWNPAADQQALARVW 810
Query: 537 RLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
R GQK+ +Y I + T+E +RQ+ K+ S+ V + +
Sbjct: 811 RDGQKKDCFIYRFIATGTIEEKVYQRQSMKMSLSSCVVDAKE 852
>gi|358385618|gb|EHK23214.1| hypothetical protein TRIVIDRAFT_220490 [Trichoderma virens Gv29-8]
Length = 802
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 149/556 (26%), Positives = 234/556 (42%), Gaps = 94/556 (16%)
Query: 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQ 125
+ K + PHQ EG +F++K + G +D +GCI++ G GKT + +
Sbjct: 209 IAKCLRPHQIEGVKFMYKCVTGQVD----------EKAHGCIMADEMGLGKTLQCITLMW 258
Query: 126 AYMKLHPRC------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVA 179
+K P + +++ P S++ W E KW + +N + GK A
Sbjct: 259 TLLKQSPNAGKSTIQKAIVVCPASLVKNWANELTKW---LGPNAINPFAIDGK------A 309
Query: 180 LMDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLSYRLFEKLVSGDELSGILLDLP 233
+ KR +L W + +G ++ +SY V+ +EL +
Sbjct: 310 PKEEMKR-----------QLRQWAIASGRSITRPVIIVSYETLR--VNVEELKHTKV--- 353
Query: 234 GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-------R 286
GL DEGH +N D+ F AL+ + RR+IL+GTP QN+ E + R
Sbjct: 354 GLLFCDEGHRLKNADSTTFSALNDLNVTRRVILTGTPIQNDLTEYFALTNFANPDLLGSR 413
Query: 287 QEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVL 346
EF + GR+ + ++H R DE EL + F+ +L
Sbjct: 414 LEFRKRFEIPILRGRDANASEH----------ERQRGDECTGELLGIVNRFLIRRTNDLL 463
Query: 347 QESLPGLRHSVVILQPDEFQKRLCKAV------------EGVKSFVELNYCVSLLSVHPS 394
+ LP VV FQ L +G + +N L + HP
Sbjct: 464 SKYLPVKYEHVVFCNLAPFQIDLYNYFITSPNIQALLRGKGSQPLKAINILKKLCN-HPD 522
Query: 395 LL---------PQQFFESFDVDSAKLARLKLDPEAGIKTRFL---LILLELSTNEKVLVF 442
LL + F E + A+ + P K + L L + TN+K+++
Sbjct: 523 LLNLSDDLPGSEKCFPEDYVPKEARGRDRDIKPWYSGKMQVLDRMLAKIREDTNDKIVLI 582
Query: 443 SQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTK 502
S Y L L R R + G L +DG V KRQ ++ NDP+ I L S+K
Sbjct: 583 SNYTSTLDLFERLCRER---QYGS--LRLDGTMTVNKRQKLVDRFNDPNGDEFIFLLSSK 637
Query: 503 ACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRR 562
A GINL+GA+R+VL D WNP ++QA++R +R GQ + VY I + T+E +R
Sbjct: 638 AGGCGINLIGANRLVLFDPDWNPAADQQALARVWRDGQTKDCFVYRFIATGTIEEKIFQR 697
Query: 563 QARKVWWSNMVFPSSD 578
Q+ K S+ V S++
Sbjct: 698 QSHKQSLSSCVVDSAE 713
>gi|374107777|gb|AEY96684.1| FAEL297Wp [Ashbya gossypii FDAG1]
Length = 895
Score = 154 bits (390), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 142/534 (26%), Positives = 239/534 (44%), Gaps = 89/534 (16%)
Query: 89 IDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-----VIIAPRS 143
+D + S G GCI++ G GKT + + ++ + RP +I+ P S
Sbjct: 309 LDANAAMTRESNRGAYGCIMADEMGLGKTLQCIALMWTLLRQGSQGRPTIEKCIIVCPSS 368
Query: 144 MLLTWEEEFKKW-GIDIPFYNLNKPELSGKEN---NGAVALMDNRKRGRGKVGLIRYVKL 199
++ W E KW G D L+ + G+++ NG+VA +
Sbjct: 369 LVNNWANEIVKWLGPDA----LSPLAIDGRKSSLSNGSVAQ-----------------SV 407
Query: 200 YSWKMGTG------ILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFK 253
W + G +L +SY + V + L G + GL + DEGH +N D+ F
Sbjct: 408 RQWAIAQGRNVVKPVLIISYETLRRNV--ENLKGCKV---GLMLADEGHRLKNGDSLTFT 462
Query: 254 ALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLIS 313
+L I RR+ILSGTP QN+ E L+ RK+ EI +
Sbjct: 463 SLDSINCPRRVILSGTPIQNDLSEYFALLNFSNPGLLGTRAQFRKNF-EIPILR------ 515
Query: 314 SIGRCANHRDDE------KLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQK 367
GR A+ D E KL EL + ++ F+ +L + LP ++ + QK
Sbjct: 516 --GRDADANDKEIAAGEVKLHELSQIVSKFIIRRTNDILSKYLPCKYEHILFVNLSPMQK 573
Query: 368 ----------RLCKAVEGVKSF-VELNYCVSLLSVHPSLL--PQQF----------FESF 404
+ K ++G S ++ + L HP LL P + ++S
Sbjct: 574 AIYEHFVRSREVAKLMKGTGSQPLKAIGLLKKLCNHPDLLDLPDEIAGSTNLIPDDYQSA 633
Query: 405 DVDSAKLARLKLDPEAGIKTRF-----LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR 459
+++ R ++ + ++F L ++ +N+K+++ S Y + L LI + R+
Sbjct: 634 MTHNSRGGRSHVEVQTTHSSKFAILERFLFKIKHESNDKIVLISNYTQTLDLIEKMCRYN 693
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
VL +DG + KRQ ++ NDPS + I L S+KA GINL+GA+R++L+
Sbjct: 694 HYG-----VLRLDGTMTINKRQKLVDKFNDPSGEEFIFLLSSKAGGCGINLIGANRLILM 748
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
D WNP ++QA++R +R GQK+ +Y IT+ ++E +RQ+ K+ S+ V
Sbjct: 749 DPDWNPAADQQALARVWRDGQKKDCFIYRFITTGSIEEKIYQRQSMKMSLSSCV 802
>gi|302307807|ref|NP_984563.2| AEL297Wp [Ashbya gossypii ATCC 10895]
gi|299789178|gb|AAS52387.2| AEL297Wp [Ashbya gossypii ATCC 10895]
Length = 895
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 142/534 (26%), Positives = 239/534 (44%), Gaps = 89/534 (16%)
Query: 89 IDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-----VIIAPRS 143
+D + S G GCI++ G GKT + + ++ + RP +I+ P S
Sbjct: 309 LDANAAMTRESNRGAYGCIMADEMGLGKTLQCIALMWTLLRQGSQGRPTIEKCIIVCPSS 368
Query: 144 MLLTWEEEFKKW-GIDIPFYNLNKPELSGKEN---NGAVALMDNRKRGRGKVGLIRYVKL 199
++ W E KW G D L+ + G+++ NG+VA +
Sbjct: 369 LVNNWANEIVKWLGPDA----LSPLAIDGRKSSLSNGSVAQ-----------------SV 407
Query: 200 YSWKMGTG------ILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFK 253
W + G +L +SY + V + L G + GL + DEGH +N D+ F
Sbjct: 408 RQWAIAQGRNVVKPVLIISYETLRRNV--ENLKGCKV---GLMLADEGHRLKNGDSLTFT 462
Query: 254 ALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLIS 313
+L I RR+ILSGTP QN+ E L+ RK+ EI +
Sbjct: 463 SLDSINCPRRVILSGTPIQNDLSEYFALLNFSNPGLLGTRAQFRKNF-EIPILR------ 515
Query: 314 SIGRCANHRDDE------KLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQK 367
GR A+ D E KL EL + ++ F+ +L + LP ++ + QK
Sbjct: 516 --GRDADATDKEIAAGEVKLHELSQIVSKFIIRRTNDILSKYLPCKYEHILFVNLSPMQK 573
Query: 368 ----------RLCKAVEGVKSF-VELNYCVSLLSVHPSLL--PQQF----------FESF 404
+ K ++G S ++ + L HP LL P + ++S
Sbjct: 574 AIYEHFVRSREVAKLMKGTGSQPLKAIGLLKKLCNHPDLLDLPDEIAGSTNLIPDDYQSA 633
Query: 405 DVDSAKLARLKLDPEAGIKTRF-----LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR 459
+++ R ++ + ++F L ++ +N+K+++ S Y + L LI + R+
Sbjct: 634 MTHNSRGGRSHVEVQTTHSSKFAILERFLFKIKHESNDKIVLISNYTQTLDLIEKMCRYN 693
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
VL +DG + KRQ ++ NDPS + I L S+KA GINL+GA+R++L+
Sbjct: 694 HYG-----VLRLDGTMTINKRQKLVDKFNDPSGEEFIFLLSSKAGGCGINLIGANRLILM 748
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
D WNP ++QA++R +R GQK+ +Y IT+ ++E +RQ+ K+ S+ V
Sbjct: 749 DPDWNPAADQQALARVWRDGQKKDCFIYRFITTGSIEEKIYQRQSMKMSLSSCV 802
>gi|406606250|emb|CCH42357.1| DNA repair and recombination protein [Wickerhamomyces ciferrii]
Length = 905
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 148/552 (26%), Positives = 254/552 (46%), Gaps = 80/552 (14%)
Query: 37 SRDSGFDSQTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKN 96
++ S D+ DPF + KK+ PHQ +G +F+++ + D
Sbjct: 261 TKASSNDTDVVIDPF--------------LGKKLRPHQVQGVKFLYECLMDLRGFD---- 302
Query: 97 STSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPR------CRPVIIA-PRSMLLTWE 149
G G +++ G GKT +T+ L +K P+ V+IA P +++ W+
Sbjct: 303 ------GQGALLADDMGLGKTLMTITTLWTLLKQSPKGFETPVVNKVLIACPVTLIGNWK 356
Query: 150 EEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGIL 209
EFKKW +P LN LS K N + D + R KV Y L I+
Sbjct: 357 REFKKW---LPMNRLNVLTLSSK-NTTSKDKQDVKNFARTKV----YQVL--------IM 400
Query: 210 GLSYRLFEKLVS-GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSG 268
G +EK+++ DEL DL + DEGH +N+ + L+ ++ ++I+LSG
Sbjct: 401 G-----YEKILNMKDELKLSKFDL---LICDEGHRLKNNSNKTLQVLNSLEISKKILLSG 452
Query: 269 TPFQNNFQELENTLSLVRQE-FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKL 327
TP QN+ E N + + G + R I K++ + I+ + + +EK
Sbjct: 453 TPIQNDLSEFFNIIDFINPGILGNFNQFKRNFMNPILKSRETNCINPEIKS---KGNEKS 509
Query: 328 KELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVEL----- 382
+EL + PF+ ++ LP V+ +P Q L V G +F +
Sbjct: 510 QELIDITKPFILRRTSAIMSNHLPPRTDIVLFCRPTNLQINLFNEVLGSTNFDNMISKTT 569
Query: 383 -NYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL------ST 435
+ +SL+++ + D +++ +K+ + I + + +L+EL T
Sbjct: 570 ASGSLSLITMFKKICNSPSLIINDKTFNQISDVKISNQ--ITSGKIQVLIELLNEISSKT 627
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
NEKV++ S Y + L I++ + + N + +DG K R S +N N SS +
Sbjct: 628 NEKVILVSNYTQTLD-ILQNILLKLNLTYQR----LDGSTPNKDRDSIVNTFNTTSSISN 682
Query: 496 I-MLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L S+K+ G+NL+GASR++L D WNP ++ QA++R +R GQK+ V +Y L+T+
Sbjct: 683 FAFLLSSKSGGVGLNLIGASRLILFDNDWNPAIDLQAMARIHRDGQKKPVFIYRLVTTGC 742
Query: 555 LEWDKLRRQARK 566
++ L+RQ K
Sbjct: 743 IDEKILQRQLMK 754
>gi|302883714|ref|XP_003040756.1| DNA repair protein, SNF2 family [Nectria haematococca mpVI 77-13-4]
gi|256721646|gb|EEU35043.1| DNA repair protein, SNF2 family [Nectria haematococca mpVI 77-13-4]
Length = 805
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 146/556 (26%), Positives = 229/556 (41%), Gaps = 98/556 (17%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ EG +F+++ + G ID NGCI++ G GKT + +
Sbjct: 214 KILRPHQVEGVKFMYRCVTGMID----------EKANGCIMADEMGLGKTLQCISLMWTL 263
Query: 128 MKLHPRC------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
+K P + +++ P S++ W E KW GA A+
Sbjct: 264 LKQSPEAGKSTIQKAIVVCPASLVKNWANELVKWL-------------------GANAIH 304
Query: 182 DNRKRGRG-KVGLIRYVKLYSWKMGTG------ILGLSYRLFEKLVSGDELSGILLDLPG 234
G+ K L R +L W + +G ++ +SY ++ +EL + G
Sbjct: 305 PFAIDGKASKEELTR--QLRQWAIASGRSVTRPVIIVSYETLR--LNVEELKHTKI---G 357
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-------RQ 287
L DEGH +N D+ F AL+ + RR+IL+GTP QN+ E + S RQ
Sbjct: 358 LLFCDEGHRLKNGDSNTFNALNSLNVTRRVILTGTPIQNDLTEYFSLTSFANPNLLGTRQ 417
Query: 288 EFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQ 347
EF + GR+ + + DE EL + F+ +L
Sbjct: 418 EFRKRFEIPILRGRD----------ADASEADRKKGDECTGELLSVVNKFLIRRTNDILS 467
Query: 348 ESLPGLRHSVVILQPDEFQKRLCKAV------------EGVKSFVELNYCVSLLSVHPSL 395
+ LP VV FQ L +G + +N L + HP L
Sbjct: 468 KYLPVKYEHVVFCNLAPFQFDLYNYFIKSPDIQALLRGKGSQPLKAINILKKLCN-HPDL 526
Query: 396 L-------------PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVF 442
L P+ F + + + + R +L + TN+K+++
Sbjct: 527 LNLSDDLPGSEGCCPEDFVPKESRGRDREVKSWYSGKMAVLDR-MLARIRQDTNDKIVLI 585
Query: 443 SQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTK 502
S Y L L R R L +DG +V KRQ ++ NDP+ + L S+K
Sbjct: 586 SNYTSTLDLFERLCRSR-----QYGCLRLDGTMNVNKRQKLVDRFNDPNGDEFVFLLSSK 640
Query: 503 ACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRR 562
A GINL+GA+R+VL D WNP ++QA++R +R GQK+ VY I + T+E +R
Sbjct: 641 AGGCGINLIGANRLVLFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQR 700
Query: 563 QARKVWWSNMVFPSSD 578
Q+ K S+ V S++
Sbjct: 701 QSHKQSLSSCVVDSAE 716
>gi|297832576|ref|XP_002884170.1| defective in RNA-directed DNA methylation 1 [Arabidopsis lyrata
subsp. lyrata]
gi|297330010|gb|EFH60429.1| defective in RNA-directed DNA methylation 1 [Arabidopsis lyrata
subsp. lyrata]
Length = 815
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 165/318 (51%), Gaps = 60/318 (18%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM 128
KM PHQ EGF+F+ N+ GCI++HAPG+GKT + + F+Q+++
Sbjct: 411 KMKPHQIEGFQFLCSNLVAD-------------DPGGCIMAHAPGSGKTFMIISFMQSFL 457
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKRG 187
+P+ +P+++ P+ +L TW++EF +W + DIP + S + N A L RK
Sbjct: 458 AKYPQAKPLVVLPKGILSTWKKEFLRWQVEDIPLLDF----YSARAENRAQQLAILRK-- 511
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV----SGDELSG--ILLDLPGLFVFDEG 241
W IL L Y+ F +V S D LS ILL +P + + DEG
Sbjct: 512 --------------WMEKKSILFLGYKQFSTIVCDDTSTDSLSCQEILLKVPSILILDEG 557
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301
HTPRN+DT + ++L++++T R+++LSGT +QN+ +E+ N L+LVR +F ++ + R
Sbjct: 558 HTPRNEDTNVLQSLAQVQTPRKVVLSGTLYQNHVKEVFNILNLVRPKFLKLDTSKSIVKR 617
Query: 302 EISKAKHASLISSIGRCAN--------------HRDDEKLK-----ELKEKIAPFVNVHK 342
+S A + + S +G ++ +D +K +L+E ++ +K
Sbjct: 618 ILSYAPISDVRSHMGNNSDVSSAFNEIVEYTLQKSEDFTMKINVIQDLREMTKKVLHYYK 677
Query: 343 GTVLQESLPGLRHSVVIL 360
G L E LPGL V+L
Sbjct: 678 GDFLDE-LPGLADFTVVL 694
>gi|448103575|ref|XP_004200069.1| Piso0_002634 [Millerozyma farinosa CBS 7064]
gi|359381491|emb|CCE81950.1| Piso0_002634 [Millerozyma farinosa CBS 7064]
Length = 857
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 143/547 (26%), Positives = 244/547 (44%), Gaps = 70/547 (12%)
Query: 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQ 125
+ K + PHQR+ F++ + G GGNG +++ G GKT T+ +
Sbjct: 231 LSKHLRPHQRDAVCFLYDCVMGFKKF----------GGNGALLADEMGLGKTLTTIAVIW 280
Query: 126 AYMKLHPR-------CRPVII-APRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGA 177
+K +P CR V+I P S++ W +EFKKW LN+ G
Sbjct: 281 TLLKQNPYLEVDSPVCRKVLITCPVSLIQNWSKEFKKW------LGLNRI--------GI 326
Query: 178 VALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFV 237
+AL + KV + + K ++ ++ +SY + L EL + +DL V
Sbjct: 327 LALNSKQNAADDKVQISSFGKTRVYQ----VMIISYE--KVLTCRKELMDLNIDL---LV 377
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DEGH ++ + + L++++ + +I+L+GTP QN+ E N ++ + VL T
Sbjct: 378 CDEGHRLKSATNKVMQTLNQMQIKSKILLTGTPIQNDLYEFYNIVNFINPG---VLGTPS 434
Query: 298 KSGREISKA-KHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHS 356
+E K A ++ + +EK EL FV +VL LP
Sbjct: 435 HFQKEFVKPISRARDMNCTNKVILDFGEEKSNELLTLTRQFVLRRSSSVLSHVLPDKTDI 494
Query: 357 VVILQPDEFQKRLCKAVEGVKSF-------VELNYCVSLLSV------HPSLLPQQFFES 403
++ P Q + KA++ ++F +N + +++V PSLL +
Sbjct: 495 IIFCPPSNLQLLMFKAIQSSQAFNSFLQSQTSVNNSLGIITVMKKLCNSPSLLANDKLFN 554
Query: 404 FDVDSAKLARLKLDP-----EAGIKTRFLLILLELST-NEKVLVFSQYIEPLTLIMEQLR 457
+ S ++ L+ +G + +LLE+ EK+++ S Y + L L LR
Sbjct: 555 EIIKSCPEPKIDLESLHKRYSSGKVNLLIPLLLEICQLKEKIVLISNYTQTLDLFENVLR 614
Query: 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPS-SQARIMLASTKACCEGINLVGASRV 516
+ L +DG K R S +N N+ + +A + L S K+ G+NL+GASR+
Sbjct: 615 -----KLNISFLRLDGSTQGKSRDSIVNEFNNSTFEKASVFLLSAKSGGFGLNLIGASRL 669
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPS 576
+L D WNP V+ QA++R +R GQK+ V +Y L T+ ++ +RQ K S +
Sbjct: 670 ILFDNDWNPSVDLQAMARIHRDGQKKPVFIYRLFTTGCIDEKIFQRQLMKQKLSEKFVDN 729
Query: 577 SDGGGND 583
+G D
Sbjct: 730 KEGSQLD 736
>gi|47575794|ref|NP_001001241.1| RAD54-like [Xenopus (Silurana) tropicalis]
gi|45708870|gb|AAH67986.1| RAD54-like (S. cerevisiae) [Xenopus (Silurana) tropicalis]
Length = 742
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 136/536 (25%), Positives = 235/536 (43%), Gaps = 71/536 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W+ + G G +G I++ G GKT + +
Sbjct: 149 KVLRPHQREGVKFLWECVTG----------RRISGSHGSIMADEMGLGKTLQCITLIWTL 198
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P +P V++ P S++ W E KW L G+ A+ D
Sbjct: 199 LRQSPDAKPEIEKAVVVCPSSLVKNWYNEVSKW-------------LGGRIQPLAI---D 242
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ + ++ + IL +SY F + GL + DEGH
Sbjct: 243 GGSKEEIDKKLSGFMNQHGMRVPSAILIISYETFRLHAEVLHRGSV-----GLVICDEGH 297
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL+ + T RR+++SGTP QN+ E SLV +L T ++ +
Sbjct: 298 RLKNSENQTYQALNSLNTVRRVLISGTPIQNDLLEY---FSLVHFVNAGILGTAQEFKKR 354
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQP 362
+ + +EKLKEL + + +L + LP VV +
Sbjct: 355 FEIPILKGRDADASAADRQKGEEKLKELIGVVNRCLIRRTSDILSKYLPVKIEQVVCCRL 414
Query: 363 DEFQKRLCKA-VEGVKSFVELN------------YCVSLLSVHPSLLPQQFFE------- 402
Q L K ++ K +LN + L HPSL+ ++ E
Sbjct: 415 TPLQSELYKLFLKQAKPAEDLNEGKISVSSLSSITSLKKLCNHPSLIYEKCVEEEEGFQG 474
Query: 403 SFDVDSAKLARLKLDPEAGIKT---RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR 459
+ ++ + + ++P+ K ++L + ++++KV++ S Y + L L + R R
Sbjct: 475 ALNLFPSGYSTKSVEPQLSGKMLVLDYILAVTRSTSSDKVVLVSNYTQTLDLFEKLCRTR 534
Query: 460 FNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
LY +DG +KKR + N PSS I + S+KA G+NL+GA+R+V
Sbjct: 535 -------RYLYVRLDGTMSIKKRAKIVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLV 587
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+ D WNP + QA++R +R GQK+ +Y L+++ T+E +RQ K S+ V
Sbjct: 588 MFDPDWNPANDEQAMARVWRDGQKKTCFIYRLLSTGTIEEKIFQRQTHKKALSSCV 643
>gi|50290001|ref|XP_447432.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526742|emb|CAG60369.1| unnamed protein product [Candida glabrata]
Length = 942
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 139/523 (26%), Positives = 233/523 (44%), Gaps = 73/523 (13%)
Query: 91 LDELKNSTSTG-GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPR-----CRPVIIAPRSM 144
L+ LK S S G GCI++ G GKT + + ++ P+ + +I+ P S+
Sbjct: 359 LEALKKSQSNNRGAYGCIMADEMGLGKTLQCIALMWTLLRQGPQGKRLISKCIIVCPSSL 418
Query: 145 LLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKM 204
+ W E KW + L+ + GK+++ A G + +K ++
Sbjct: 419 VNNWANELVKW---LGPNTLSPLAVDGKKSSLA----------SGATSVAEAIKNWAQAQ 465
Query: 205 GTGI----LGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKT 260
G I L +SY + V + + + GL + DEGH +N D+ F AL I
Sbjct: 466 GRNIVKPVLIISYDTLRRNVKQLQNTEV-----GLLLADEGHRLKNGDSLTFTALDSINC 520
Query: 261 RRRIILSGTPFQNNFQELENTLSL-------VRQEFGEVLRTVRKSGREISKAKHASLIS 313
RR+ILSGTP QN+ E L+ R EF R I +++ A
Sbjct: 521 PRRVILSGTPIQNDLSEYFALLNFSNPGLLGTRNEFR------RNFEIPILRSRDADATD 574
Query: 314 SIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLC--- 370
+ + ++KL+ L ++ F+ +L + LP V+ + FQK++
Sbjct: 575 NDVKSG----EQKLQLLSNIVSKFIIRRTNDILSKYLPCKYEHVIFVNLTPFQKQVYNML 630
Query: 371 -------KAVEGVKSFVELNYCVSL--LSVHPSL--LPQQFFESFDVDSAKLARLKLDPE 419
K V+G L L L HP L L ++ D+D +
Sbjct: 631 IKSRDIKKVVKGDGGSQPLKAIGVLKKLCNHPDLIKLDEELDNYNDLDIPDDYSIPTGKS 690
Query: 420 AGIKTRF---------LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY 470
++T+F L ++ +++K+++ S Y + L LI R+R +
Sbjct: 691 RDVQTQFSGKFAILERFLHKIKTESDDKIVLISNYTQTLDLIERMCRNRH-----YASVR 745
Query: 471 MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQ 530
+DG + KRQ ++ NDP Q I L S+KA GINL+GA+R++L+D WNP ++Q
Sbjct: 746 LDGTMSINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQ 805
Query: 531 AISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
A++R +R GQK+ +Y I++ T+E +RQ+ K+ S+ V
Sbjct: 806 ALARVWRDGQKKDCFIYRFISTGTIEEKIYQRQSMKMSLSSCV 848
>gi|118383249|ref|XP_001024779.1| SNF2 family N-terminal domain containing protein [Tetrahymena
thermophila]
gi|89306546|gb|EAS04534.1| SNF2 family N-terminal domain containing protein [Tetrahymena
thermophila SB210]
Length = 1046
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 142/531 (26%), Positives = 235/531 (44%), Gaps = 97/531 (18%)
Query: 73 HQREGFEFIWKNIAG--GIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL 130
HQR G +F+++ I+G G D+ GCI++ + G GKT T+ + ++
Sbjct: 317 HQRLGVKFMFECISGLRGPDI------------GGCILADSMGLGKTLQTIALIWTLIRR 364
Query: 131 HPRC-------RPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVAL 180
+P + V++AP S+L +W +E KKW D IP L K E
Sbjct: 365 NPHSGTSPLIRKVVVVAPVSLLGSWNKEVKKWLGDARLIPKIALGKRET----------- 413
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
+IR K ++ +L +SY F V L + L +FDE
Sbjct: 414 ------------VIRICKEFASSSAKMLL-ISYEQFRMHVE------TLSNACDLLIFDE 454
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
GH +N + F++ + IK RRIIL+GTP QN+ E + + V + ++
Sbjct: 455 GHRLKNMNIKTFRSFNSIKCNRRIILTGTPLQNSLDEFYSCVKFVN---PNIFENEKQFK 511
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
S A+L S A + + KEL I+ FV K +L++ LP + L
Sbjct: 512 FVFSDPILAALKSDASADAVEKAAVRSKELTHIISRFVLRRKADILEKLLPPRSEYFIFL 571
Query: 361 QPDEFQKRLCKAV-----------EGVKSFVELNYCVSLLSVHPSLL--------PQQFF 401
+ FQ L K + G +F L LL+ HP L+ Q+F
Sbjct: 572 KLTPFQNMLYKKMIQARYNKSELDTGEGAFGLLTIMRKLLN-HPQLIYTDVGNQTSQEFK 630
Query: 402 ESFDVDSAKLARLKLDP-EAGIKTRFLLILLEL--------STNEKVLVFSQYIEPLTLI 452
+ F D +LD EA K +F+ LL+ + E++++ S + + L ++
Sbjct: 631 QYFPQD------YQLDDWEASFKFKFISDLLDQMRQIEIAQKSTERIIIVSYWTQTLDVL 684
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
++ + + + +DG + +KRQ I+ DP++ ++ L A G+NL
Sbjct: 685 QIMIKQK-----NLKFVRLDGSVNAQKRQELIDRFQDPTNDIKVFLLCGSAGGTGLNLSA 739
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQ 563
A+R+VL++ WNP + Q + R +R GQ + VH+Y L+ T+E L+RQ
Sbjct: 740 ANRMVLMEANWNPSNDLQVMGRIWRDGQTKPVHIYRLVACGTMEEKVLQRQ 790
>gi|195342153|ref|XP_002037666.1| GM18177 [Drosophila sechellia]
gi|194132516|gb|EDW54084.1| GM18177 [Drosophila sechellia]
Length = 717
Score = 152 bits (384), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 128/485 (26%), Positives = 222/485 (45%), Gaps = 72/485 (14%)
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P ++++P S++ WE+EF KW L G+ L+
Sbjct: 140 PECKPTINKAIVVSPSSLVKNWEKEFTKW-------------LQGR-------LLCLPME 179
Query: 187 GRGKVGLIRYVKLYSW---KMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHT 243
G K IR ++ +S ++GT +L +SY F + + L + G+ + DEGH
Sbjct: 180 GGTKENTIRALEQFSMTSARLGTPVLLISYETFR--IYAEILCQYQV---GMVICDEGHR 234
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF------------GE 291
+N D ++AL +KT+RR++LSGTP QN+ E + ++ V E
Sbjct: 235 LKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNFESA 294
Query: 292 VLRTVRKSGREISKA----KHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQ 347
+LR E + K LI + +C R ++ L + V K T +Q
Sbjct: 295 ILRGQNTDSTEAERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVICAKLTAIQ 354
Query: 348 ESLPGLRHSVVILQPDEFQKRL--CKAVEGVKSFVELNYCVSLLSVHPSLLPQQ------ 399
L L+ D+ ++ L C + + ++ + S HP L+ ++
Sbjct: 355 -----LELYTNFLKSDQVRRSLADCNEKASLTALADITTLKKICS-HPDLIYEKLTAREK 408
Query: 400 -FFESFDVDSAKLARLKLDPEAGIK---TRFLLILLELSTNEKVLVFSQYIEPLTLIMEQ 455
F S +V + L+PE K F+L + N+KV++ S Y + L L +
Sbjct: 409 GFENSQNVLPSNYKPKDLNPELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLDLFEQL 468
Query: 456 LRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515
R R + G + +DG +KKR ++ NDP S + + + S+KA G+NL+GA+R
Sbjct: 469 ARKR---KYG--FVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANR 523
Query: 516 VVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFP 575
+ + D WNP + QA++R +R GQK+ ++Y L+ S ++E L+RQ K S+ +
Sbjct: 524 LFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIID 583
Query: 576 SSDGG 580
+++
Sbjct: 584 NNESA 588
>gi|330840974|ref|XP_003292481.1| hypothetical protein DICPUDRAFT_50468 [Dictyostelium purpureum]
gi|325077256|gb|EGC30980.1| hypothetical protein DICPUDRAFT_50468 [Dictyostelium purpureum]
Length = 928
Score = 152 bits (383), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 145/546 (26%), Positives = 237/546 (43%), Gaps = 99/546 (18%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGG--GNGCIISHAPGTGKTGLTLVFLQA 126
K+ PHQREG +F++ + G GG GNGCI++ G GK+ + L
Sbjct: 274 KLRPHQREGVKFVFDCLLG-----------FRGGFKGNGCILADDMGLGKSIQAITILWT 322
Query: 127 YMKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
+K P+ P VI+AP S++ W +E KKW D +N VA+
Sbjct: 323 LLKQGPKGEPTAKKAVIVAPCSLVGNWCKELKKWLGD----GIN-----------TVAIG 367
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVF 238
++ K GR K+ + + +L +SY R++ + V ++S I GL +
Sbjct: 368 ESTKTGRAKLSELEF-------GPADVLIISYDQLRIYCEDVC--KISSI-----GLVIC 413
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK 298
DEGH +N + KA+S I T RR+ILSGTP QN+ E ++ V + + T +
Sbjct: 414 DEGHRLKNAEIKTTKAVSMIPTPRRVILSGTPIQNDLTEFYAMVNFVNPGLLKNVATFKN 473
Query: 299 SGREISKAKHASLISSIGRCANHRDD----EKLKELKEKIAPFVNVHKGTVLQESLPGLR 354
A +++S A + E+ EL F+ V + LP
Sbjct: 474 -------VYDAPIVASRSPEATEEERKIGRERSAELSRLTGQFILRRTAIVNTQYLPPKV 526
Query: 355 HSVVILQPDEFQKRLCK----------------AVEGVKSFVELNYCVSLLSVHPSLLPQ 398
VV + + QK + + A+ + + +L+ C L+ + P
Sbjct: 527 EYVVFCKLTDLQKSIYRHLIKEAKDSCFASASGALPLITTLKKLSNCAELVYLPDKEAPT 586
Query: 399 QFFESFDVDSAKLARLK-------LDPEAGIKTRFLLILL----ELSTNEKVLVFSQYIE 447
+ VD + L+ P+ K F+ LL + + +KV++ S Y +
Sbjct: 587 E------VDKSVLSLFPKEWNPKVFQPQYSSKLLFVDRLLTKIRDSKSGDKVVIISNYTQ 640
Query: 448 PLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEG 507
L ++ + R G +DG KRQ +++ NDP L S+KA G
Sbjct: 641 TLEVLAIMCKTR-----GYAYFQLDGSTPNAKRQQLVDLYNDPKRPEFAFLLSSKAGGVG 695
Query: 508 INLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567
+NL+G + +VL D WNP + Q+++R +R GQK+VV +Y T+ T+E +RQ K
Sbjct: 696 LNLIGGNHLVLFDADWNPANDAQSMARVWREGQKKVVSIYRTFTTGTIEEKIFQRQLTKQ 755
Query: 568 WWSNMV 573
S +
Sbjct: 756 ALSTSI 761
>gi|428180190|gb|EKX49058.1| hypothetical protein GUITHDRAFT_52900, partial [Guillardia theta
CCMP2712]
Length = 527
Score = 151 bits (382), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 141/518 (27%), Positives = 229/518 (44%), Gaps = 71/518 (13%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMK 129
M PHQ G +F++KN+ + + NS +G CI++ G GKT ++ + MK
Sbjct: 11 MKPHQIAGTKFLYKNL-----MTKHPNSIVSG----CILADEMGLGKTLQSIALIWTLMK 61
Query: 130 LHPRC-------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
P + +I+ P S++ W E KKW D L+ ++ N + + D
Sbjct: 62 QSPFSLTDPIVRKAIIVCPSSLVFNWANEIKKWLGD---QRLSAQAITKGGTNASNDVND 118
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
K +V +I Y L R + L + L V DEG
Sbjct: 119 FVKGNVKRVLIISYDMLR-------------RHIQMLSRYQNIQ--------LVVCDEGQ 157
Query: 243 TPRN-DDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS-G 300
+N D +L+ + + RI+LSGTP QN+ E ++ V + RK
Sbjct: 158 KLKNIDGNKTIDSLNALPCKMRILLSGTPVQNDLDEFYAMVNWVCPGTLGAPKQFRKIFA 217
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
I K++ S + R R LKEL ++ +P V + +P V+
Sbjct: 218 DAIIKSRDKSCSKDLQRIGKKR----LKELIKRTSPIVLRRTSKDIVAQMPPKYEKVIFC 273
Query: 361 QPDEFQKR----------LCKAVEGVKSFVELNYCVSLLSV--HPSLLPQQFFESFDVDS 408
+P QK+ L KA+EG V L HP L+ E ++
Sbjct: 274 RPSPLQKKIYKSLLSSSELKKAIEGNSGQVVFTIISKLTKALNHPDLVTANQIEDEQNNN 333
Query: 409 AKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEV 468
+ ++ LK D I TR STN++V++ S Y L L+ + + + +++
Sbjct: 334 SNIS-LKFD----INTREFF---PSSTNDRVVIVSNYTTSLDLV-DTICKKLSYK----T 380
Query: 469 LYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVE 528
+ +DG ++ KR ++ N+PSS + L S+KA G+NL+G +RV+LLD WNP +
Sbjct: 381 VRLDGSTEISKRSDIVSSFNNPSSGIFVFLLSSKAGGVGLNLIGGNRVILLDPSWNPAHD 440
Query: 529 RQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
QA++R +R GQ + V VY L+T+ T+E ++Q RK
Sbjct: 441 LQAMARVWRFGQPKPVFVYRLLTTGTIEERIFQKQIRK 478
>gi|255718981|ref|XP_002555771.1| KLTH0G17028p [Lachancea thermotolerans]
gi|238937155|emb|CAR25334.1| KLTH0G17028p [Lachancea thermotolerans CBS 6340]
Length = 1000
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 140/515 (27%), Positives = 227/515 (44%), Gaps = 80/515 (15%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-----VIIAPRSMLLTWEEEFKKWG 156
G GCI++ G GKT + + ++ P+ +P +I+ P S++ W E KW
Sbjct: 430 GAYGCIMADEMGLGKTLQCIALMWTLLRQGPQGKPTIDKCIIVCPSSLVNNWANEIVKW- 488
Query: 157 IDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTG------ILG 210
L + L+ +G + + N G V + SW + G +L
Sbjct: 489 -------LGRGTLASLPIDGKKSSLSN-----GTVA----QAVRSWALAQGRSVVKPVLI 532
Query: 211 LSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTP 270
+SY + V + GL + DEGH +N D+ F +L+ I+ RR+ILSGTP
Sbjct: 533 ISYETLRRNVEHLRHCDV-----GLLLADEGHRLKNADSQTFTSLNSIRCPRRVILSGTP 587
Query: 271 FQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRD------D 324
QN+ E L+ G + K+ L GR A+ D D
Sbjct: 588 IQNDLSEYFALLNFSNPGL---------LGSRLEFRKNFELPILRGRDADAMDEDVKKGD 638
Query: 325 EKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKA----------VE 374
E+L+ L ++ F+ +L + LP V+ + FQ+ L + V+
Sbjct: 639 ERLQALSTIVSKFIIRRTNDILSKYLPCKYEHVIFVNLKPFQRSLYEHMLKSRDIKLLVK 698
Query: 375 GVKSFVELNYCVSL--LSVHPSLL--PQQFFESFDV--------DSAKLARLKLDP---- 418
K L + L L HP LL P S D+ +K R +L
Sbjct: 699 DAKHTQPLKHIGVLKKLCNHPDLLRLPDDIEGSEDLMPEDYQSSTVSKRGRSELQTWHSG 758
Query: 419 EAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVK 478
+ I RFL ++ +++K+++ S Y + L LI + R V+ +DG +
Sbjct: 759 KFSILGRFLH-KIKTESDDKIVIISNYTQTLDLIEKMCRS-----STYPVVRLDGTMTIN 812
Query: 479 KRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRL 538
KRQ ++ NDP Q I L S+KA GINL+GA+R++L+D WNP ++QA++R +R
Sbjct: 813 KRQKLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRD 872
Query: 539 GQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
GQK+ +Y I + ++E +RQ+ K+ S+ V
Sbjct: 873 GQKKDCFIYRFICTGSIEEKIYQRQSMKMSLSSCV 907
>gi|156086958|ref|XP_001610886.1| DNA repair and recombination protein RAD54-like [Babesia bovis
T2Bo]
gi|154798139|gb|EDO07318.1| DNA repair and recombination protein RAD54-like , putative [Babesia
bovis]
Length = 824
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 146/547 (26%), Positives = 236/547 (43%), Gaps = 92/547 (16%)
Query: 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP 132
HQR+G +F++ + G L E G GCI++ G GKT ++ + +
Sbjct: 141 HQRQGVQFVFDCLMG---LKEF-------NGQGCILADDMGLGKTLQSITVMWTLLNNGL 190
Query: 133 RCRPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG 187
+P I+ P S++ WE E KKW L GK AVA K
Sbjct: 191 NGKPAARKCAIVCPASLVNNWESEIKKW-------------LKGKCPCTAVAEGVKEK-- 235
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND 247
++ + + + ++ SY F + +L G+ +DL + DE H +ND
Sbjct: 236 -----VVSKFTGFKYDRQSNVIISSYETFR--LHAKKLEGVPIDL---VICDEAHRLKND 285
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS-------G 300
T A+ + + R++LSGTP QN+ E +SL + RK G
Sbjct: 286 KTLTSVAIQNLPAKMRLMLSGTPIQNDLNEFYALVSLCNPNVLGDISNFRKHYANPILLG 345
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
RE K I++ E+L +L FV T+L + LP + V
Sbjct: 346 REPDATKAQQEIAA----------ERLADLSYITNQFVLRRTNTLLSKVLPPKINMNVFC 395
Query: 361 QPDEFQKRL---------CKAVEGVKSFV---ELNYCVSLLSV--HPSLL-------PQQ 399
E QK + C+ + V L +SL+ V HP L+ P +
Sbjct: 396 NLTETQKIIYTSYTNSASCRKLINSGEVVMTKSLGVILSLMKVCNHPGLIKPSPSKKPTK 455
Query: 400 FFESFDVDSAKLARLKLD----PEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPLTLI 452
E A L+ + PE KT L LL +T++++++ S Y + L +
Sbjct: 456 ADELIKEIHANYNTLQKNRSCYPELSAKTLVLFRLLHNIRRTTSDRIVIISNYTQTLD-V 514
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
E++ + N+ + +DG +KKR + NDP+S + L S+KA GINL+G
Sbjct: 515 FERMCKQCNY----PCVRLDGTLSIKKRHKLVTTFNDPNSHSFAFLLSSKAGGCGINLIG 570
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNM 572
A+R+VL D WNP ++QA++R +R GQ++ ++Y ++ T+E +RQ K S M
Sbjct: 571 ANRLVLFDPDWNPANDKQALARVWRDGQRKTCYIYRFFSTGTIEEKIYQRQICKDGLSAM 630
Query: 573 VFPSSDG 579
+ +DG
Sbjct: 631 LV--TDG 635
>gi|390602016|gb|EIN11409.1| hypothetical protein PUNSTDRAFT_141784 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 980
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 157/578 (27%), Positives = 249/578 (43%), Gaps = 119/578 (20%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM 128
++ PHQ+EG +F+++ + G L+ G GCI++ G GKT T+ + +
Sbjct: 284 RLRPHQKEGVKFLYECVMG------LRKHE----GQGCILADEMGLGKTLQTIALVWTLL 333
Query: 129 KLHPRC-------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
K +P + +I+ P S++ W+ EF KW
Sbjct: 334 KQNPYAGVGPVIGKAMIVCPVSLINNWKNEFHKW-------------------------- 367
Query: 182 DNRKRGRGKVGLI------RYVKLYSWKMGTGILGLSYRLFEKLVSG-DELSGILLDLP- 233
GR +VG+ ++K + ++ R+ + LV G ++L ++ DL
Sbjct: 368 ----LGRDRVGVFVGDKDKAHIKQF----------INTRIHQVLVIGYEKLRTVIDDLRY 413
Query: 234 -----GLFVFDEGH---TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
GL + DEGH + N + MFKAL+ T+RR+ILSGTP QN+ E
Sbjct: 414 CNPPIGLIICDEGHRLKSANNKTSQMFKALN---TKRRVILSGTPIQNDLSEFHAMADFC 470
Query: 286 RQEFGEVLRTVRKSGRE-ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGT 344
+ +T ++ + I K++ + R + L K FV +
Sbjct: 471 NPGLLDDYKTFKRVYEDPILKSRAVGCTAKEAEIGEARTTQLLNVAKS----FVLRRDAS 526
Query: 345 VLQESLPGLRHSVVILQPDEFQ----------KRLCKAVEG-VKSFVELNYCVSLLSVHP 393
+L LP VV + P Q +L VEG V + L ++ +S P
Sbjct: 527 ILDNYLPPKCEYVVFVTPTRLQLSIFSQILRADKLDDLVEGSVAESLALINMLTRVSTSP 586
Query: 394 SLLP----QQFFESFDVDSAKLARL----KLDPE---------AGIKTRF--LLILLELS 434
LL Q +S +S K L L PE +G T LL ++
Sbjct: 587 VLLKATADQAKSKSIQANSIKRNALYQAVALLPERFKIEDVSLSGKLTALASLLRMIRKH 646
Query: 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
T EK +V S Y L +I +F +G L +DG+ KRQ +N N S A
Sbjct: 647 TEEKCIVVSHYTSTLHII-----EQFCKVKGYTYLRLDGQTPPTKRQEYVNEFNKTSQSA 701
Query: 495 RIM-LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553
+ + L S KA G+NL+GASR+ L+D WNP + QA++R +R GQKR V +Y +T+
Sbjct: 702 KFLFLLSAKAGGVGLNLIGASRLCLIDSDWNPSHDLQAMARIHRDGQKRPVFIYRFLTAG 761
Query: 554 TLEWDKLRRQARKVWWSNMVFPSSDGGG--NDQTTASE 589
T++ +RQ K+ S+ + + GG +D TA +
Sbjct: 762 TIDEKIYQRQVTKLGLSDSLMGTDTGGSSKSDSFTAKD 799
>gi|118367847|ref|XP_001017133.1| Type III restriction enzyme, res subunit family protein [Tetrahymena
thermophila]
gi|89298900|gb|EAR96888.1| Type III restriction enzyme, res subunit family protein [Tetrahymena
thermophila SB210]
Length = 2184
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 136/495 (27%), Positives = 225/495 (45%), Gaps = 69/495 (13%)
Query: 107 IISHAPGTGKTGLTLVFL-QAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLN 165
I++ G GKT + F+ Y + R +IIAP S L W+ + W NLN
Sbjct: 838 ILADEMGLGKTIQSTAFINHLYTFENVRGPFLIIAPLSTLEHWKRSVEDWT------NLN 891
Query: 166 KPELSGKENNGAVALMDNR-KRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
AV D+ + GR ++ GT + F+ L++ +E
Sbjct: 892 -----------AVLYYDHSGQEGRNCCRFYEWLYTDISTKGTVLQSNEIYKFQVLITSNE 940
Query: 225 L-----SGILLDLPGLF-VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
+ + L+++P F V DE H +N + + L R+ +R ++L+GTP QNN +EL
Sbjct: 941 VFLSDTNNFLINIPFQFIVVDEAHRLKNQNAKILATLKRLPCKRTLLLTGTPIQNNTEEL 1000
Query: 279 ENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
L+ I K ASL + ++ E++ L+ KI PF+
Sbjct: 1001 WTLLNY------------------IEPNKFASLQEFKEQFGELQNKEQVDNLQVKIKPFL 1042
Query: 339 NVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV-EGVKSFVELNYCVSLLSV------ 391
+++S+P L+ +++ ++ QK L +A+ E KS ++ N+ ++
Sbjct: 1043 LRRMKEDVEDSIPPLQETIIDIEMTTLQKTLYRAIYERNKSMLQKNFSSMAMNTSLNNLE 1102
Query: 392 --------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNE--KVLV 441
HP L+ + E R K + K L L++ E K+L+
Sbjct: 1103 MQLRKCCNHPFLIKEMEIELTQNFKTSEERYKCLVDTSGKMILLDKLVQKYKIEGKKILI 1162
Query: 442 FSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLA 499
FSQ++ L L+ E LR+R ++ Y +DG K+RQ++I+ NDP + + L
Sbjct: 1163 FSQFVYMLNLLEEYLRYR-------QLKYEKIDGSVKSKERQNAIDRFNDPDKKRDVFLL 1215
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
STKA GINL A+ V++ D WNP + QA +RA+R+GQK+ V VY IT +T E +
Sbjct: 1216 STKAGGLGINLTSANIVIIFDSDWNPQNDVQATARAHRIGQKQEVMVYRFITKKTYEAEM 1275
Query: 560 LRRQARKVWWSNMVF 574
R +K+ +F
Sbjct: 1276 FERATKKLGLDQAIF 1290
>gi|452845972|gb|EME47905.1| hypothetical protein DOTSEDRAFT_102471, partial [Dothistroma
septosporum NZE10]
Length = 834
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 143/552 (25%), Positives = 241/552 (43%), Gaps = 88/552 (15%)
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
++ R++RK HQREG F+++ + G D D G G I++ G GKT T
Sbjct: 186 ILSRELRK----HQREGVAFLYECVMGMKDYD----------GEGAILADEMGLGKTLQT 231
Query: 121 LVFLQAYMKLHP--RCRPVI-----IAPRSMLLTWEEEFKKW------GIDIPFYNLNKP 167
+ + +K P + +P++ + P +++ W++EF+KW G IP
Sbjct: 232 IALIWTLLKQTPFWKGQPIVSKALVVCPVTLIRNWQKEFRKWLGDYRCGCFIP------- 284
Query: 168 ELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG 227
++N ++A +K V +I Y KL K D+L
Sbjct: 285 ----GDSNSSLAPF-TQKLSSNPVMIIGYEKLTKIK-------------------DQLKN 320
Query: 228 ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
+D L + DEGH + A+ I T+RR+ILSGTP QN+ +E + V
Sbjct: 321 CKID---LIICDEGHRLKTAKNKAAAAIKEIGTQRRVILSGTPIQNDLEEFYQMVDFVNP 377
Query: 288 EFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQ 347
T ++ EI + +S + + + +EL + F+ +L
Sbjct: 378 SIMSKYSTFKRE-FEIPIVRMRQPEASASDV--EKGEARSEELANRTGMFILRRTSEILS 434
Query: 348 ESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFV-ELNYCVSLLSV---------HPSLLP 397
+ LP VV+ +P E Q + + + G ++F+ +N ++L + P LL
Sbjct: 435 QYLPPKTEYVVLCRPTEVQADIYRTMVGTQAFIAAMNTPTAVLELINVLKKVCNCPRLLL 494
Query: 398 QQFFESFDVDSAKL-----ARLKLDPEAGIKTRFLLILLEL---STNEKVLVFSQYIEPL 449
+ V +L RL P A K + L LL +T+EKV++ S Y +
Sbjct: 495 TNDSKKEGVTKPELLEGISPRLLKSPGASGKLQVLDELLHQINSTTDEKVVLVSNYTSTM 554
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGI 508
I+ L +++ L +DG KRQ ++ N P + + + L S KA G+
Sbjct: 555 D-ILANLLDSMSYK----YLRLDGTTPQSKRQDLVDRFNRSPKTNSFVFLLSAKAGGVGL 609
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NL GASR+++ D+ WNP + QA++R +R GQ R H+Y L+T L+ +RQ K
Sbjct: 610 NLTGASRLIMFDLDWNPSTDLQAMARVHRDGQTRPCHIYRLLTQGALDEKIFQRQVSKTG 669
Query: 569 WSNMVFPSSDGG 580
++ + G
Sbjct: 670 LADAIVDGKSGA 681
>gi|401408081|ref|XP_003883489.1| hypothetical protein NCLIV_032440 [Neospora caninum Liverpool]
gi|325117906|emb|CBZ53457.1| hypothetical protein NCLIV_032440 [Neospora caninum Liverpool]
Length = 713
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 151/553 (27%), Positives = 241/553 (43%), Gaps = 97/553 (17%)
Query: 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFL-----QAY 127
HQR+G +F++ + G D G GCI++ G GKT ++ L Q
Sbjct: 9 HQRQGVKFMFDCLMGLKDFQ----------GEGCILADDMGLGKTLQSITILWTLLEQNI 58
Query: 128 MKLHPRCR-PVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P R V++ P S++ W E +KW L G+ G + DN
Sbjct: 59 EGTQPAVRRAVVVCPASLVNNWAAEIQKW-------------LQGR--CGCTPVADN--- 100
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRN 246
K ++ + + + + IL SY F V L G+ +D+ V DE H +N
Sbjct: 101 --CKDKVVSKFEGFKYDRQSRILIASYETFR--VHVHRLEGVPIDM---VVCDEAHRLKN 153
Query: 247 DDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKA 306
D T A+ + ++R++LSGTP QN+ E +SL T RK
Sbjct: 154 DKTKTSLAIIELPAKKRLLLSGTPIQNDLDEFFALVSLCNPNVVGDAHTFRK-------- 205
Query: 307 KHASLISSIGRCANHRDDE------KLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
++A+ I IGR + +D+ +L EL F+ ++L + LP V
Sbjct: 206 RYANPIL-IGREPDATEDQQQLAAARLTELSSLTNMFILRRTNSLLAKVLPPKVVLNVFC 264
Query: 361 QPDEFQKRL---------CKAV-----EGVKSFVE--LNYCVSLLSV--HPSLLPQQ--- 399
+ QK C+ + EG F L+ L+ + HPSL+ Q
Sbjct: 265 RLTPLQKEFYRSFLSSKSCRKIFAAEAEGKSGFTGRVLSSIQGLMKLCNHPSLVKSQAQM 324
Query: 400 ---------FFESFDVDSAKLARLKLDPEAGIKTRFLLI---LLELSTNEKVLVFSQYIE 447
+F D++ K + PE K L ++ +TN+K+++ S Y +
Sbjct: 325 LQGFEKCEKYFSELDLEGQKARSRLVRPEISGKLLLLARLLDVIRTTTNDKIVLISNYTQ 384
Query: 448 PLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDP-SSQARIMLASTKACCE 506
L L R G V+ +DG+ +KKR + I NDP + Q+ + L S+KA
Sbjct: 385 TLDLFDRMCRDC-----GYPVMRLDGQTSIKKRHAMITKFNDPMNPQSFVFLLSSKAGGC 439
Query: 507 GINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
G+NL+GA+R+VL D WNP ++QA++R +R GQK+ ++Y ++ T+E +RQ K
Sbjct: 440 GVNLIGANRLVLFDPDWNPANDKQALARVWRDGQKKPCYIYRFFSTGTIEEKIYQRQICK 499
Query: 567 VWWSNMVFPSSDG 579
S M+ SDG
Sbjct: 500 DGLSAMLV--SDG 510
>gi|453087791|gb|EMF15832.1| SNF2_N-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 978
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 140/538 (26%), Positives = 234/538 (43%), Gaps = 84/538 (15%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
+ + PHQR+G +F+++ + G D D G G I++ G GKT T+ L
Sbjct: 283 RSLRPHQRQGVQFMYECVMGMKDYD----------GEGAILADEMGLGKTLQTIALLWTL 332
Query: 128 MKLHPRC-------RPVIIAPRSMLLTWEEEFKKW-GID-IPFYNLNKPELSGKENNGAV 178
+K +P + +I+ P S++ W +EF KW G D I Y + NG +
Sbjct: 333 LKQNPIADAPPVIKKALIVCPVSLVKNWHKEFNKWLGNDRIGVYMVE---------NGKM 383
Query: 179 ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVF 238
L D K V +I Y KL +K + G SGI + +
Sbjct: 384 RLTDFTKGKAYHVMIIGYEKLTK--------------VQKELQG--ASGI-----DIVIC 422
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK 298
DEGH + A+ + T RR+ILSGTP QN+ E + V T +
Sbjct: 423 DEGHRLKTSTNKAASAIKTLSTERRVILSGTPVQNDLAEFYTMVDFVNPNILSKYTTFK- 481
Query: 299 SGREISKAKHASLISSIGRCANHRDDEKLKELKEKIA----PFVNVHKGTVLQESLPGLR 354
RE ++ S A +D EK + E++A F+ +L + LP
Sbjct: 482 --REF----ETPIMKSRQPGAAEKDLEKGEARSEELANLTGKFILRRTAEILDKYLPPKT 535
Query: 355 HSVVILQPDEFQKRLCKAVEGVKSF----------VELNYCVSLLSVHPSLLPQQFFESF 404
VV +P + Q+++ + + ++F +EL + + PSLL +
Sbjct: 536 EYVVFCRPTDAQRQIYRTIISTQAFATALNSPAVSLELIMILKKVCNSPSLLLGTNVKGE 595
Query: 405 DVDSAKLA-----RLKLDPEAGIKTRFL---LILLELSTNEKVLVFSQYIEPLTLIMEQL 456
++ + +L P A K + L L+ ++ T++KV++ S Y + ++ +
Sbjct: 596 EIKRPEFIEGIPRKLLSTPAASAKIQVLDELLVKIKNETDDKVVLVSNYTSTMDILAALI 655
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPS-SQARIMLASTKACCEGINLVGASR 515
G L +DG KRQ ++ N S S + I L S KA GINL+GASR
Sbjct: 656 TSL-----GMSYLRLDGSTPQSKRQDMVDRFNRSSQSNSFIFLLSAKAGGTGINLIGASR 710
Query: 516 VVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+++ D+ WNP ++ QA++R +R GQK+ +Y +T ++ +RQ K ++ +
Sbjct: 711 LIMYDLDWNPALDLQAMARIHRDGQKKPCFIYRFVTQGAMDEKIFQRQVTKTGLADSI 768
>gi|403216105|emb|CCK70603.1| hypothetical protein KNAG_0E03460 [Kazachstania naganishii CBS
8797]
Length = 902
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 154/624 (24%), Positives = 262/624 (41%), Gaps = 134/624 (21%)
Query: 32 LDDLNSRDSGFDSQTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAG---- 87
+DDLN+ + F V ++ + K + PHQ EG +F+++ + G
Sbjct: 237 MDDLNNIEKKF-------------ANVPVVIDPKLSKILRPHQVEGVKFLYRCVTGLAMK 283
Query: 88 -GIDLDEL---------------------KNST---------STGGGNGCIISHAPGTGK 116
+D ++L KNS + G GCI++ G GK
Sbjct: 284 DFMDAEKLNTMKEPSQLPPQLEPEGKSPAKNSAKEPVAEVVPARRGAYGCIMADEMGLGK 343
Query: 117 TGLTLVFLQAYMKLHPRCR-----PVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSG 171
T + + ++ P+ + +I+ P S++ W E KW L LS
Sbjct: 344 TLQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNWANELVKW--------LGPGTLSP 395
Query: 172 KENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLSYRLFEKLVSGDEL 225
+D +K +++W G +L +SY + V D+L
Sbjct: 396 -------LAIDGKKSSLVSGSSTVSEAVHAWAQAKGRNVVKPVLIISYETLRRNV--DQL 446
Query: 226 SGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL- 284
+ GL + DEGH +N D+ F AL I RR+ILSGTP QN+ E L+
Sbjct: 447 KNCNV---GLMLADEGHRLKNGDSLTFTALDSINCPRRVILSGTPIQNDLSEYFALLNFS 503
Query: 285 ------VRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
R EF + GR+ + A + S G +L++L ++ F+
Sbjct: 504 NPGLLGTRAEFRKNFELPILRGRD-AGATDKEIKKSEG---------QLEKLSNVVSKFI 553
Query: 339 NVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV------------EGVKSFVELNYCV 386
+L + LP V+ + FQ L K + EG ++ +
Sbjct: 554 IRRTNDILSKYLPCKYEHVIFVNLKPFQHHLYKELLESRSVKKTTNGEGGSQPLQAIGIL 613
Query: 387 SLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAG--------IKTRF---------LLI 429
L HP+L+ +F + F D +L++ P ++T F L
Sbjct: 614 KKLCNHPNLI--EFEKEFGEDYPD--KLQIPPNYNFPGSKSRDVQTEFSGKFSILQRFLH 669
Query: 430 LLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND 489
++ +++K+++ S Y + L LI R++ + +DG + KRQ+ ++ ND
Sbjct: 670 KIKTESDDKIVLISNYTQTLDLIERMCRYQHYGS-----VRLDGTMTINKRQNLVDRFND 724
Query: 490 PSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHL 549
P Q I L S+KA GINL+GA+R++L+D WNP ++QA++R +R GQK+ +Y
Sbjct: 725 PEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQKKDCFIYRF 784
Query: 550 ITSETLEWDKLRRQARKVWWSNMV 573
IT+ ++E +RQ+ K+ S+ V
Sbjct: 785 ITTGSIEEKIFQRQSMKMSLSSCV 808
>gi|392902165|ref|NP_001255913.1| Protein Y116A8C.13, isoform a [Caenorhabditis elegans]
gi|34556097|emb|CAB55149.2| Protein Y116A8C.13, isoform a [Caenorhabditis elegans]
Length = 833
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 163/550 (29%), Positives = 245/550 (44%), Gaps = 93/550 (16%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
+ + PHQ+ G +FI+ + + S GGG G I++ G GK+ T+ A
Sbjct: 204 RHLRPHQKSGIQFIFDRLR--------RGSGKNGGGGGAILADDMGLGKSLQTMAATWAL 255
Query: 128 MK-------LHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K L C +II P S++ W+ EF KW + F +AL
Sbjct: 256 LKGSKTAQQLANSC--LIIVPSSLVNNWKAEFDKWWRLMRF-------------PAVIAL 300
Query: 181 MDNR-KRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFD 239
N + + L+ Y L +SY L ++ V ++L I D+ V D
Sbjct: 301 TANDITTYQSTIKLMPY------------LVISYDLAQRHV--EKLKIIRFDV---MVCD 343
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGEVLRTVRK 298
EGH +N D + K L ++ RR+IL+GTP QN+F+E + L VR FG ++
Sbjct: 344 EGHKLKNLDGKLRKTLLSLEIPRRLILTGTPMQNDFEEFYSLLDFVRPSVFGSIVEF--- 400
Query: 299 SGREISKAKHASLISSIGRCANHRD--DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHS 356
R++ + L I C R D LK L EK H+ + + P +H
Sbjct: 401 --RKMCSDRPEQLNELIDECMLRRTAADVDLKHLPEK-------HEYILFCAASPIQKH- 450
Query: 357 VVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSA-KLARLK 415
+C + G + L + L+ HP LL E + A K + L
Sbjct: 451 --------VHSEICDYMTG--DALSLIFFARQLANHPKLLLDNLREKTEKSKAHKHSPLL 500
Query: 416 LD------PEAGIK-TRFLLILLELST-----NEKVLVFSQYIEPLTLIMEQLRHRFNWR 463
L P G+K + L L+++ E ++ S YIE L +I +QL N++
Sbjct: 501 LAFDGAHMPRGGVKESGKLTALVDMIKCFRLLQECTVIVSNYIETLDMI-QQLCEYLNFK 559
Query: 464 EGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVW 523
VL +DGK V RQ + ND + I L STKA G+NL+GASR+VL D W
Sbjct: 560 ----VLRLDGKTQVPDRQKLVRTFNDHRDPSNIFLLSTKAGGVGLNLIGASRLVLFDSDW 615
Query: 524 NPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGND 583
NP ++QA++R +R GQ R H+Y LIT+ T+E L+RQ +K V + + G
Sbjct: 616 NPANDQQAMARIWRDGQVRPCHIYRLITTGTIEEKMLQRQIKKTGL-GCVIDAIEVGDTI 674
Query: 584 QTTASEPLED 593
T E L+D
Sbjct: 675 ATFTDEDLKD 684
>gi|452985646|gb|EME85402.1| hypothetical protein MYCFIDRAFT_213848 [Pseudocercospora fijiensis
CIRAD86]
Length = 966
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 145/540 (26%), Positives = 232/540 (42%), Gaps = 87/540 (16%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQREG F+++ + G D D G G I++ G GKT T+ L
Sbjct: 284 KHLREHQREGVAFLYECVMGMKDYD----------GEGAILADEMGLGKTLQTIALLWTL 333
Query: 128 MKLHPRC-------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P + +I+ P S++ W EF+KW G E G
Sbjct: 334 LKQNPVFEDAPVIKKALIVCPVSLIKNWRNEFRKW--------------LGSERIGVFVA 379
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS-GDEL-SGILLDLPGLFVF 238
DN+ R L + K ++ + I+G +EKL D+L G +D+ +
Sbjct: 380 DDNKMR------LTDFTKGRAYHVM--IIG-----YEKLTKVKDQLQGGTGIDI---VIC 423
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK 298
DEGH + A+ + T RRIILSGTP QN+ E + V T +K
Sbjct: 424 DEGHRLKTASNKAAGAIKSLNTDRRIILSGTPIQNDLSEFYTMVDFVNPNIMSKYTTFKK 483
Query: 299 SGREISKAKHASLISSIGRCANHRDDEKLK----ELKEKIAPFVNVHKGTVLQESLPGLR 354
++ S A+ D EK + +L + F+ +L + LP
Sbjct: 484 EF-------ETPILKSRQPGASQSDLEKGEARSAQLADLTGKFILRRTAEILNKYLPPKT 536
Query: 355 HSVVILQPDEFQKRLCKAVEGVKSFV----------ELNYCVSLLSVHPSLLPQQFFESF 404
VV +P E QK + + + ++F+ EL + + P+LL Q+ +
Sbjct: 537 EYVVFCRPTEAQKTVYRMIVSSQAFMAAMNTKAVVLELIMILKKVCNSPNLLIQKTGDK- 595
Query: 405 DVDSAKLARLKLDPE-----AGIKTRF-----LLILLELSTNEKVLVFSQYIEPLTLIME 454
D + + + P+ AG + LL + T+EKV+V S Y + ++
Sbjct: 596 DEQTKRSDLFEDVPKHLLGSAGSSGKLQVFDSLLHQIHTHTDEKVVVVSNYTSTMDVL-- 653
Query: 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND-PSSQARIMLASTKACCEGINLVGA 513
R L +DG KRQ ++ N P +A ++L S KA G+NL+GA
Sbjct: 654 ---GRLLTSMDMSFLRLDGSTPTNKRQEIVDHFNRWPRKKAFVLLLSAKAGGVGLNLIGA 710
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
SR+V+ D+ WNP + QA++R +R GQKR +Y L+T L+ +RQ KV ++ +
Sbjct: 711 SRLVMFDMDWNPATDLQAMARVHRDGQKRPCFIYRLLTQGALDEKIFQRQVSKVGLADSI 770
>gi|392902167|ref|NP_001255914.1| Protein Y116A8C.13, isoform b [Caenorhabditis elegans]
gi|290457487|emb|CBK19482.1| Protein Y116A8C.13, isoform b [Caenorhabditis elegans]
Length = 720
Score = 149 bits (375), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 163/550 (29%), Positives = 245/550 (44%), Gaps = 93/550 (16%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
+ + PHQ+ G +FI+ + + S GGG G I++ G GK+ T+ A
Sbjct: 91 RHLRPHQKSGIQFIFDRLR--------RGSGKNGGGGGAILADDMGLGKSLQTMAATWAL 142
Query: 128 MK-------LHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K L C +II P S++ W+ EF KW + F +AL
Sbjct: 143 LKGSKTAQQLANSC--LIIVPSSLVNNWKAEFDKWWRLMRF-------------PAVIAL 187
Query: 181 MDNR-KRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFD 239
N + + L+ Y L +SY L ++ V ++L I D+ V D
Sbjct: 188 TANDITTYQSTIKLMPY------------LVISYDLAQRHV--EKLKIIRFDV---MVCD 230
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGEVLRTVRK 298
EGH +N D + K L ++ RR+IL+GTP QN+F+E + L VR FG ++
Sbjct: 231 EGHKLKNLDGKLRKTLLSLEIPRRLILTGTPMQNDFEEFYSLLDFVRPSVFGSIVEF--- 287
Query: 299 SGREISKAKHASLISSIGRCANHRD--DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHS 356
R++ + L I C R D LK L EK H+ + + P +H
Sbjct: 288 --RKMCSDRPEQLNELIDECMLRRTAADVDLKHLPEK-------HEYILFCAASPIQKH- 337
Query: 357 VVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSA-KLARLK 415
+C + G + L + L+ HP LL E + A K + L
Sbjct: 338 --------VHSEICDYMTG--DALSLIFFARQLANHPKLLLDNLREKTEKSKAHKHSPLL 387
Query: 416 LD------PEAGIK-TRFLLILLELST-----NEKVLVFSQYIEPLTLIMEQLRHRFNWR 463
L P G+K + L L+++ E ++ S YIE L +I +QL N++
Sbjct: 388 LAFDGAHMPRGGVKESGKLTALVDMIKCFRLLQECTVIVSNYIETLDMI-QQLCEYLNFK 446
Query: 464 EGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVW 523
VL +DGK V RQ + ND + I L STKA G+NL+GASR+VL D W
Sbjct: 447 ----VLRLDGKTQVPDRQKLVRTFNDHRDPSNIFLLSTKAGGVGLNLIGASRLVLFDSDW 502
Query: 524 NPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGND 583
NP ++QA++R +R GQ R H+Y LIT+ T+E L+RQ +K V + + G
Sbjct: 503 NPANDQQAMARIWRDGQVRPCHIYRLITTGTIEEKMLQRQIKKTGL-GCVIDAIEVGDTI 561
Query: 584 QTTASEPLED 593
T E L+D
Sbjct: 562 ATFTDEDLKD 571
>gi|449704175|gb|EMD44466.1| DNA repair protein, putative [Entamoeba histolytica KU27]
Length = 764
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 149/544 (27%), Positives = 250/544 (45%), Gaps = 75/544 (13%)
Query: 49 DPFTHAQGTVWE---LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNG 105
+PF + E L+ + K + PHQ EG +F++ I GG G
Sbjct: 171 NPFAYCIDDKKEPAILIDPYIGKFLRPHQIEGVKFMYHCIM-------------RGGECG 217
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW-GIDIPFYNL 164
CI++ G GKT T+ + K + VI+ P+S++ WE+EFKKW G++
Sbjct: 218 CILADEMGLGKTLQTITLIWTVYKQCNIKKIVIVCPQSLIGNWEKEFKKWLGVE------ 271
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
P +G ++ +++ +++ Y +L +SY V +
Sbjct: 272 RIPVQTGSSDSSMKEKVND------------FIRDY-----IPVLIISYEQVRSHVETLK 314
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
+ I GL V DEGH +N + +L + R IILSGTP QN LE+ SL
Sbjct: 315 KTKI-----GLIVCDEGHRIKNLMSKTNSSLKALGGSRHIILSGTPVQNG---LEDFYSL 366
Query: 285 VRQEFGEVLRTVRKSGR----EISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNV 340
+ L T+ R I KA+ + +SI E+ KEL K+ +V
Sbjct: 367 IEFCSPGCLGTLSSFKRVFAIPIQKAQDGN--ASIEEI--QLGTERAKELTNKLNDYVLR 422
Query: 341 HKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSL--------LSVH 392
V ++ LP V+ ++P Q +L K + +L+ C +L L H
Sbjct: 423 RTSQVNEKYLPDKTEIVLFIKPSYLQIKLYKIMLKELEKKKLDQCSALKYIQLFTKLCNH 482
Query: 393 PSLLPQQFFE---SFDVDSAKLAR-LKLDPEAG----IKTRFLLILLELSTNEKVLVFSQ 444
PSL+ + E S + + K + + L+ E+ I +F+ +L + + EKV++ S
Sbjct: 483 PSLISKYLTEEKISLNENDEKCIKGISLNEESSNKFNITIQFIKEIL-IKSKEKVVLVSN 541
Query: 445 YIEPLTLIMEQLRHRFNWREGQ--EVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTK 502
Y + L L + +++ + L +DGK K+R + +ND SS I+L S+K
Sbjct: 542 YTKTLDLFEIYFKQEEEYKQKKIFNYLRLDGKTSQKQRDIIVEKINDKSSNYNILLLSSK 601
Query: 503 ACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRR 562
A G+NL+G SR++L D WNP ++QA++R +R GQ++ +Y ++ + T+E +R
Sbjct: 602 AGGVGLNLIGCSRLILFDPDWNPAKDKQAMARIWRDGQQKKAMIYRMLCTGTIEEKIYQR 661
Query: 563 QARK 566
Q +K
Sbjct: 662 QLQK 665
>gi|448099761|ref|XP_004199216.1| Piso0_002634 [Millerozyma farinosa CBS 7064]
gi|359380638|emb|CCE82879.1| Piso0_002634 [Millerozyma farinosa CBS 7064]
Length = 857
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 143/551 (25%), Positives = 246/551 (44%), Gaps = 78/551 (14%)
Query: 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQ 125
+ K + PHQ + F++ I G KN GGNG +++ G GKT T+ +
Sbjct: 231 LSKHLRPHQSDAVCFLYDCIMG------FKN----FGGNGTLLADEMGLGKTLTTIAVIW 280
Query: 126 AYMKLHPR-------CRPVII-APRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGA 177
+K +P C+ V+I P S++ W +EFKKW LN+ G
Sbjct: 281 TLLKQNPYLEVDSPVCKKVLITCPVSLIQNWSKEFKKW------LGLNRI--------GI 326
Query: 178 VALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFV 237
+AL + KV + + K ++ ++ +SY + L EL + +DL V
Sbjct: 327 LALNSKQNAADDKVQISSFGKTRVYQ----VMIISYE--KVLTCRKELMDLNIDL---LV 377
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGEVLRTV 296
DEGH + + + L++++ + +I+L+GTP QN+ E N ++ + G
Sbjct: 378 CDEGHRLKTATNKVMQTLNQMQIKMKILLTGTPIQNDLYEFYNIVNFINPGVLGTPSHFQ 437
Query: 297 RKSGREISKAKHASLISSIGRCANHR----DDEKLKELKEKIAPFVNVHKGTVLQESLPG 352
++ + IS+A+ + C N +EK EL FV +VL LP
Sbjct: 438 KEFVKPISRARDMN-------CTNKVILDFGEEKSNELLTLTRQFVLRRSSSVLSHVLPD 490
Query: 353 LRHSVVILQPDEFQKRLCKAVEGVKSF-------VELNYCVSLLSV------HPSLLPQQ 399
++ P Q + KA+ ++F +N + +++V PSLL
Sbjct: 491 KTDIIIFCPPSSLQLFMFKAISSSQAFNSFLQSQASVNNSLGIITVMKKLCNSPSLLAND 550
Query: 400 FFESFDVDSAKLARLKLDP-----EAGIKTRFLLILLELST-NEKVLVFSQYIEPLTLIM 453
+ S + +++ L+ +G + +LLE+ EK+++ S Y + L L
Sbjct: 551 KLFKEIIKSCQESKIDLESLHKRYSSGKVNLLIPLLLEICELKEKIVLISNYTQTLDLFE 610
Query: 454 EQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPS-SQARIMLASTKACCEGINLVG 512
LR + L +DG K R + +N N+ + +A + L S K+ G+NL+G
Sbjct: 611 NILR-----KLNISFLRLDGSTLGKSRDNIVNEFNNSTFEKASVFLLSAKSGGFGLNLIG 665
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNM 572
ASR++L D WNP V+ QA++R +R GQK+ V +Y L T+ ++ +RQ K S
Sbjct: 666 ASRLILFDNDWNPSVDLQAMARIHRDGQKKPVFIYRLFTTGCIDEKIFQRQLMKQKLSEK 725
Query: 573 VFPSSDGGGND 583
+ +G D
Sbjct: 726 FVDNKEGSQLD 736
>gi|183234185|ref|XP_650328.2| DNA repair protein [Entamoeba histolytica HM-1:IMSS]
gi|169801218|gb|EAL44942.2| DNA repair protein, putative [Entamoeba histolytica HM-1:IMSS]
Length = 764
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 152/544 (27%), Positives = 248/544 (45%), Gaps = 75/544 (13%)
Query: 49 DPFTHAQGTVWE---LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNG 105
+PF + E L+ + K + PHQ EG +F++ I GG G
Sbjct: 171 NPFAYCIDDKKEPAILIDPYIGKFLRPHQIEGVKFMYHCIM-------------RGGECG 217
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW-GIDIPFYNL 164
CI++ G GKT T+ + K + VI+ P+S++ WE+EFKKW G++
Sbjct: 218 CILADEMGLGKTLQTITLIWTVYKQCNIKKIVIVCPQSLIGNWEKEFKKWLGVERISVQT 277
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
+ S KE KV +++ Y +L +SY V +
Sbjct: 278 GSSDSSMKE----------------KVN--DFIRDY-----IPVLIISYEQVRSHVETLK 314
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
+ I GL V DEGH +N + +L + R IILSGTP QN LE+ SL
Sbjct: 315 KTKI-----GLIVCDEGHRIKNLMSKTNSSLKALGGSRHIILSGTPVQNG---LEDFYSL 366
Query: 285 VRQEFGEVLRTVRKSGR----EISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNV 340
+ L T+ R I KA+ + +SI E+ KEL K+ +V
Sbjct: 367 IEFCSPGCLGTLSSFKRVFAIPIQKAQDGN--ASIEEI--QLGTERAKELTNKLNDYVLR 422
Query: 341 HKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSL--------LSVH 392
V ++ LP V+ ++P Q +L K + +L+ C +L L H
Sbjct: 423 RTSQVNEKYLPDKTEIVLFIKPSYLQIKLYKIMLKELEKKKLDQCSALKYIQLFTKLCNH 482
Query: 393 PSLLPQQFFE---SFDVDSAKLAR-LKLDPEAG----IKTRFLLILLELSTNEKVLVFSQ 444
PSL+ + E S + + K + + L+ E+ I +F+ +L + + EKV++ S
Sbjct: 483 PSLISKYLTEEKISLNENDEKCIKGISLNEESSNKFNITIQFIKEIL-IKSKEKVVLVSN 541
Query: 445 YIEPLTLIMEQLRHRFNWREGQ--EVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTK 502
Y + L L + +++ + L +DGK K+R + +ND SS I+L S+K
Sbjct: 542 YTKTLDLFEIYFKQEEEYKQKKIFNYLRLDGKTSQKQRDIIVEKINDKSSNYNILLLSSK 601
Query: 503 ACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRR 562
A G+NL+G SR++L D WNP ++QA++R +R GQ++ +Y ++ + T+E +R
Sbjct: 602 AGGVGLNLIGCSRLILFDPDWNPAKDKQAMARIWRDGQQKKAMIYRMLCTGTIEEKIYQR 661
Query: 563 QARK 566
Q +K
Sbjct: 662 QLQK 665
>gi|393217524|gb|EJD03013.1| hypothetical protein FOMMEDRAFT_123160 [Fomitiporia mediterranea
MF3/22]
Length = 1026
Score = 148 bits (374), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 167/573 (29%), Positives = 251/573 (43%), Gaps = 109/573 (19%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
+ + PHQ+EG +F+++ + G L+ G GCI++ G GKT T+ +
Sbjct: 358 RHLRPHQKEGVKFMYECVMG------LRKHE----GQGCILADEMGMGKTLQTITLVWTL 407
Query: 128 MKLHPRC------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPEL---SGKENNGAV 178
+K + + +I+ P +++ W++EF KW L K L +G +N AV
Sbjct: 408 LKQNCYAGTPAVGKVMIVCPVTLIANWKKEFHKW--------LGKDRLGIFTGDKNKEAV 459
Query: 179 ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVF 238
N K +V +I Y KL T I L+Y L GL +
Sbjct: 460 KQFINSKIH--QVLIIGYEKLR-----TVISELAY---------------CLPPIGLIIC 497
Query: 239 DEGH---TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQE-----------LENTLSL 284
DEGH + N + MF+ALS T RRIILSGTP QN+ E L + S+
Sbjct: 498 DEGHRLKSSNNKTSTMFEALS---TPRRIILSGTPIQNDLSEFHAMADFCNPGLLDDYSI 554
Query: 285 VRQEFGEVLRTVRKSG-----REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVN 339
R+ F + R REI + + A L + R+ L +V
Sbjct: 555 FRKVFENAILKSRTPDCSAKEREIGEGRQAQLQTVARSFVLRREASILTNYLPPKYEYVV 614
Query: 340 VHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQ 399
+ LQ + V ILQPD L ++ + ++L ++ LS P LL
Sbjct: 615 FVTPSPLQRQM-----FVKILQPDTLATVLHGSMARSLAMIQL---LTKLSNSPILLKAA 666
Query: 400 F-----------FESFDVDSAKL----ARLKLDPEAGIKTRFL---LILLELSTNEKVLV 441
E+FD ++ KL AR + DP K + L L L T+EK ++
Sbjct: 667 LEKREDKAESDAHEAFD-EAVKLLPECARAQ-DPALSGKLQALSNLLAYLRKETDEKCIL 724
Query: 442 FSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND-PSSQARIMLAS 500
S Y L +I E F + L +DG+ V KRQ ++ N P S A + L S
Sbjct: 725 VSHYTSTLDVIEE-----FCKEKKYTFLRLDGQTPVAKRQEYVDRFNKAPQSGAFLFLLS 779
Query: 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKL 560
KA G+NL+GASR+ L+D WNP + Q+++R +R GQKR V +Y L+T+ T++
Sbjct: 780 AKAGGVGLNLIGASRLCLIDSDWNPSHDLQSMARIHRDGQKRPVFIYRLLTAGTIDEKIY 839
Query: 561 RRQARKVWWSNMVF----PSSDGGGNDQTTASE 589
+RQ K+ S + P S +D T E
Sbjct: 840 QRQITKLALSASLMGKDAPDSGSSKSDSFTQKE 872
>gi|389638974|ref|XP_003717120.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
[Magnaporthe oryzae 70-15]
gi|351642939|gb|EHA50801.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
[Magnaporthe oryzae 70-15]
gi|440473058|gb|ELQ41880.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
[Magnaporthe oryzae Y34]
gi|440478318|gb|ELQ59160.1| SNF2 family ATP-dependent chromatin-remodeling factor snf21
[Magnaporthe oryzae P131]
Length = 1592
Score = 148 bits (373), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 147/562 (26%), Positives = 238/562 (42%), Gaps = 110/562 (19%)
Query: 54 AQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPG 113
+QG ++ VP + + + HQ EG F+W + + GC+++H G
Sbjct: 559 SQGFIY--VPEPIAQNIKDHQIEGVRFMWNQV------------VNDDRSQGCLLAHTMG 604
Query: 114 TGKTGLTLVFLQA--YMKLHP-------------RCRPVIIAPRSMLLTWEEEFKKWGID 158
GKT + L A + P R + +++ P +L W +EF +W
Sbjct: 605 LGKTVQVICLLVAIQHAAQSPDPSVVSQIPKELQRSQTLVLCPPGLLNNWLDEFSRWVE- 663
Query: 159 IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEK 218
P+ L G + +D+ + I W GIL + Y LF
Sbjct: 664 -PYDAL-----------GRIYKIDSEIPAEARAASIE-----PWVNTGGILLMGYSLFRS 706
Query: 219 LVS-GD-ELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQ 276
LVS GD ++ L +LP + V DE HT +N+ + + +A++ K + +I ++G+P N+
Sbjct: 707 LVSSGDSKMQTWLTELPSIVVADEAHTIKNERSKISEAMANFKAKAKIAMTGSPLANSVG 766
Query: 277 ELENTLSLV-------RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKE 329
+ + ++ V R+EF + + G L R + LK
Sbjct: 767 DYFSMINWVAPNYLGPRKEFTHFFASPIQEG----------LFVDSSPAEKRRAMKLLKA 816
Query: 330 LKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQK-------RLCKAVEGVKSFVEL 382
LK+ ++P V+ T L+ LP R V+++ E+QK R + L
Sbjct: 817 LKDTVSPKVHRMTTTALRGQLPEKREYVIVVPLTEYQKSAYEVYMRWVATRADATTVSLL 876
Query: 383 NYC--VSLLSVHPSLLPQQFFE---SFDVDSAKLARLKLDPEAGI--------------- 422
Y +S L VHP + Q F E +D D K + P I
Sbjct: 877 GYICQLSTLLVHPRIFLQYFVELANEYDKDVRKSDSGREIPRHVIGNLIAEVNRRDIHNL 936
Query: 423 ----KTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGK 474
K L +L+ + +KVL+FS I L + N + Q+ Y +DG+
Sbjct: 937 DHSYKITVLTRILDEAKRVGDKVLIFSSRIPVLNFLE-------NLMKMQKRPYSRLDGE 989
Query: 475 QDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISR 534
+ RQ+S+ N ++ + L ST A G+N+ GA+RVV++D W P E+QAI R
Sbjct: 990 TKISTRQASVANFN--ANNDEVYLISTNAGGVGLNIQGANRVVMMDFQWQPANEQQAIGR 1047
Query: 535 AYRLGQKRVVHVYHLITSETLE 556
AYR+GQ + V+VY LI T E
Sbjct: 1048 AYRIGQTKPVYVYWLIVGGTYE 1069
>gi|340502773|gb|EGR29425.1| snf2 family n-terminal domain protein [Ichthyophthirius
multifiliis]
Length = 632
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 141/497 (28%), Positives = 227/497 (45%), Gaps = 77/497 (15%)
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHP--RCRP-----VIIAPRSMLLTWEEEFKKWGI 157
GCI++ + G GKT T+ + ++ +P C+P +I+ P S+L W++E +KW
Sbjct: 15 GCILADSMGLGKTLQTIALIWVLLRRNPFSSCKPFLNKVIIVTPVSLLGVWKKEIRKWLG 74
Query: 158 D---IPFYNLNKPE---LSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGL 211
D IP + K E + KE G+ KV LI Y + +
Sbjct: 75 DERLIPKIAIGKREDVITTCKEFAGSYQ----------KVLLISYDQFRT---------- 114
Query: 212 SYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPF 271
++F K+ L +FDEGH +N + FK I+ +RRIIL+GTP
Sbjct: 115 HVKIFNKICD-------------LLIFDEGHKLKNMNIKTFKQFDLIQCKRRIILTGTPL 161
Query: 272 QNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANH----RDDEKL 327
QN+ EL + + V E + ++ +I+SI A+ + +
Sbjct: 162 QNSLNELYSCIKFVNPFIFE-------NDKQFKSLFSDPIIASIKTDASEEIIKQAKMRS 214
Query: 328 KELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCV- 386
KEL I FV K +L++ LP + L+ E QK L V+ F E V
Sbjct: 215 KELSNIIQKFVLRRKADILEKLLPPKYEFYIFLKMTELQKMLYSKVQQNYDFNENQTAVL 274
Query: 387 SLLSV------HPSLL--PQQFFESFDVDSAKLARLKLDPEAG-IKTRFLL-ILLEL--- 433
+LL+ HP +L Q+ SF+ +L+ A +KT+FL IL ++
Sbjct: 275 TLLTSIRKILNHPQILYTDQENKNSFEFKQYFPHDFQLNDWANSVKTQFLKDILYQIKDQ 334
Query: 434 ----STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND 489
+ EK+++ S Y + L LI + + + E ++L +DG +RQ I+ D
Sbjct: 335 QKLKNQKEKIIIVSYYTQTLDLIQQLINQ--HESEHFKILRLDGSVQSTQRQKLIDQFQD 392
Query: 490 PSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHL 549
+S I L KA G+NL A+R++L++V WNP + Q + R +R GQ + V++Y L
Sbjct: 393 QNSNYNIFLLCAKAGGTGLNLTAANRMILMEVDWNPSNDLQVMGRIWRDGQTKNVYIYRL 452
Query: 550 ITSETLEWDKLRRQARK 566
+ T+E L+RQ K
Sbjct: 453 FCTGTMEEKILQRQFLK 469
>gi|398407551|ref|XP_003855241.1| SNF2 family DNA-dependent ATPase domain-containing protein
[Zymoseptoria tritici IPO323]
gi|339475125|gb|EGP90217.1| SNF2 family DNA-dependent ATPase domain-containing protein
[Zymoseptoria tritici IPO323]
Length = 979
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 147/532 (27%), Positives = 229/532 (43%), Gaps = 80/532 (15%)
Query: 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP 132
HQR G F+++ + G D D G G I++ G GKT T+ L +K P
Sbjct: 304 HQRVGVSFLYECVMGMKDFD----------GEGAILADEMGLGKTLQTIALLWTLLKQDP 353
Query: 133 RCRP-----------VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
P +I+ P +++ W++E KW L K +S V +
Sbjct: 354 AQNPAQPGIGLIKKALIVCPVTVIKNWKKEIYKW--------LGKTGIS-------VFVA 398
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS-GDELSGILLDLPGLFVFDE 240
DN R + + K + + I+G +EKLV +L +D+ + DE
Sbjct: 399 DNHNR------ITDFTKGKCYNIM--IIG-----YEKLVKVQKQLQEAKIDI---VIADE 442
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
GH + +A+ + T +RIILSGTP QN+ E + LV VL
Sbjct: 443 GHRLKTAANKAAQAIKSLNTDKRIILSGTPIQNDLSEFFMMVDLVNP---SVLGKYTTFK 499
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
RE AS A + + + +EL F+ +L + LP VV
Sbjct: 500 REFEGPIVASRQPGATAAALEKGEARSEELANITNMFILRRTSEILSKYLPPKTEYVVFC 559
Query: 361 QPDEFQKRLCKAVEGVKSFV-ELNYCVSLLSV---------HPSLLPQQFFESFDVDSAK 410
+P + QK++ +AV FV +N +L + P LL ++ + + A
Sbjct: 560 KPTKVQKQIYRAVIEAPVFVAAMNTPTEVLRLITMLKKVCNAPKLLIKKDEKGNEERVAD 619
Query: 411 LAR-----LKLDPEAGIKTRF---LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNW 462
L L P A K LL ++ T+EKV++ S Y L ++ + F
Sbjct: 620 LIEHIPQSLLKAPHASGKLAVLDDLLFQIDTKTDEKVVLVSNYTSTLDVLQD-----FIG 674
Query: 463 REGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGINLVGASRVVLLDV 521
G L +DG V KRQ ++ N P +++ + L S KA GINL+GASR++L D+
Sbjct: 675 LLGYSWLRLDGSTPVAKRQDLVDTFNRSPKTKSFVFLLSAKAGGVGINLIGASRLILYDL 734
Query: 522 VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
WNP + QA++R +R GQKR H+Y L+T L+ +RQ K + +
Sbjct: 735 DWNPATDLQAMARVHRDGQKRPCHIYRLLTQGALDEKIFQRQISKTGLAESI 786
>gi|242778005|ref|XP_002479148.1| dsDNA-dependent ATPase (Rad54b), putative [Talaromyces stipitatus
ATCC 10500]
gi|218722767|gb|EED22185.1| dsDNA-dependent ATPase (Rad54b), putative [Talaromyces stipitatus
ATCC 10500]
Length = 1037
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 158/551 (28%), Positives = 236/551 (42%), Gaps = 101/551 (18%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQREG +F+++ + G D + G G I++ G GKT T+ L
Sbjct: 311 KHLREHQREGVKFLYECVMGLRDYN----------GEGAILADEMGLGKTLQTITLLWTL 360
Query: 128 MKLH--PRCRPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K + PV I+ P +++ W +EF+KW G E G
Sbjct: 361 LKQNFIYEAAPVVKKALIVCPVTLINNWRKEFRKW--------------LGNERIGVFVF 406
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTG----ILGLSYRLFEKLVSGDE--LSGILLDLPG 234
D RK KL + MG I+G +EKL + E L G +D+
Sbjct: 407 DDKRK------------KLTDFTMGKAYNVMIIG-----YEKLRTVQEGLLKGHGIDI-- 447
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294
+ DEGH + +A+ + T +RIILSGTP QN+ E + LV +L
Sbjct: 448 -VIADEGHRLKTVQNKSGQAIQALNTAKRIILSGTPIQNDLSEFFAAVDLVNPG---ILG 503
Query: 295 TVRKSGREISKAKHASLISSIGRCANHRDDEKLK----ELKEKIAPFVNVHKGTVLQESL 350
T + +E ++ S A RD EK + EL+E + F+ +L L
Sbjct: 504 TYKNFMKEF----EGPIVRSQQPEATIRDIEKGETRGEELRELTSMFILRRTADILSRYL 559
Query: 351 PGLRHSVVILQPDEFQKRLCKAVEGVKSFV----ELNYCVSLLSV------HPSLL---- 396
P V++ P Q + + V G F SLL++ PSLL
Sbjct: 560 PPKTEYVILCNPTSVQASIYRHVLGSPIFQTALGNTEGAFSLLTILKKLCNSPSLLNAKT 619
Query: 397 ---PQQFFESFDVDSAKLA-RLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPL 449
PQ + + + + R + P + K R L LL ST+EK+++ S Y L
Sbjct: 620 DDEPQNSTVATLLSTLSPSLRRQFSPSSSGKIRVLDQLLHNLRTSTSEKIVIVSNYTSTL 679
Query: 450 TLI---MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACC 505
L+ + L F L +DG KRQS ++ N P+S L S KA
Sbjct: 680 NLLGVLLTSLSLPF--------LRLDGSTPSSKRQSLVDDFNRAPASTCFAFLLSAKAGG 731
Query: 506 EGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQAR 565
G+NL GASR+VL DV WNP + QA++R +R GQKR ++Y ++ LE +RQ
Sbjct: 732 TGLNLTGASRLVLYDVDWNPATDLQAMARIHRDGQKRHCYIYRIMLKGALEEKIWQRQVT 791
Query: 566 KVWWSNMVFPS 576
K+ ++ V S
Sbjct: 792 KIGLADSVMES 802
>gi|402588718|gb|EJW82651.1| hypothetical protein WUBG_06439, partial [Wuchereria bancrofti]
Length = 591
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 135/521 (25%), Positives = 229/521 (43%), Gaps = 89/521 (17%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F++ + G +GCI++ G GKT + + ++
Sbjct: 118 PHQREGVKFMYDCVTG----------VRIPSAHGCIMADEMGLGKTLQCITLMWTLLRQG 167
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P +P VI+ P S++ W++E +KW L G+ N V D+ +
Sbjct: 168 PDAKPTLNKAVIVCPSSLVKNWDKEIRKW-------------LGGRVNALPV---DSGGK 211
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
L +++ + T +L +SY F S ILL GL + DEGH +
Sbjct: 212 DEIDRNLEKFMSQMGVRCPTPVLIISYETFRLHAS------ILLQKEIGLIICDEGHRLK 265
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKSGREIS 304
N D ++AL +K RRI++SGTP QN+ E + ++ V G R+ I
Sbjct: 266 NSDNQTYQALFGLKCERRILISGTPIQNDLLEYYSLINFVNPGLLGTASEFKRRFENIIL 325
Query: 305 KAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDE 364
+ + A + + D L E+ ++ + +L + LP ++ + E
Sbjct: 326 RGRDADATDA----QREKGDTALTEMSSIVSKCIIRRTSALLTKYLPVKYELIICCKLTE 381
Query: 365 FQKRL--------------------CKAVEGVKSFVELNYCVSL--LSVHPSLL---PQQ 399
Q++L C + G L++ +L L HP L+ Q+
Sbjct: 382 LQEKLYNQLISAFSMGGKQKVTEGKCDKITGT----ALSFITNLKKLCNHPQLILNKCQK 437
Query: 400 FFESFDVDSAKLAR----LKLDPEAGIKTR---FLLILLELSTNEKVLVFSQYIEPLTLI 452
E F+ D KL K +P K + +LL +TN+K ++ S Y + +
Sbjct: 438 KEEGFE-DCLKLFPGDFGKKFEPAFSGKMKVLDYLLAATRATTNDKFILVSNYTQTIDAF 496
Query: 453 ME--QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINL 510
+E QLR R+ + + +DG +K+R + NDP S + L S+KA G+NL
Sbjct: 497 VELCQLR-RYPY------IRLDGTCTIKQRAKLVEKFNDPESIEYVFLLSSKAGGCGLNL 549
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLIT 551
+GA+R+++ D WNP + QA++R +R GQK+ +Y L++
Sbjct: 550 IGANRLIMFDPDWNPANDDQAMARVWRDGQKKNCFIYRLLS 590
>gi|363754225|ref|XP_003647328.1| hypothetical protein Ecym_6118 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890965|gb|AET40511.1| hypothetical protein Ecym_6118 [Eremothecium cymbalariae
DBVPG#7215]
Length = 915
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 142/519 (27%), Positives = 232/519 (44%), Gaps = 84/519 (16%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-----VIIAPRSMLLTWEEEFKKWG 156
G GCI++ G GKT + L ++ + RP +I+ P S++ W E KW
Sbjct: 341 GAYGCIMADEMGLGKTLQCISLLWTLLRQGSQGRPTIDKCIIVCPSSLVNNWANEIVKW- 399
Query: 157 IDIPFYNLNKPELSGKEN---NGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGI----L 209
+ +L+ + GK++ NG+V+ + +K ++ G I L
Sbjct: 400 --LGPNSLSPLAIDGKKSSLPNGSVS---------------QSIKQWALSQGRNIVKPVL 442
Query: 210 GLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGT 269
+SY + V + S + GL + DEGH +N ++ F +L I RR+ILSGT
Sbjct: 443 IISYETLRRNVDLLKHSKV-----GLMLADEGHRLKNGESLTFTSLDSINCSRRVILSGT 497
Query: 270 PFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDE---- 325
P QN+ E LS L R R K+ L GR A+ D E
Sbjct: 498 PIQNDLSEYFALLSFSNPG----LLGTRSQFR-----KNFELPILRGRDADATDKEIEEG 548
Query: 326 --KLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRL----------CKAV 373
KL++L + ++ F+ +L + LP V+ + QK + K V
Sbjct: 549 QLKLQQLSQIVSKFIIRRTNDILSKYLPCKYEHVIFVNLSPMQKSIYQHFVKSRDVAKLV 608
Query: 374 EGVKSF-VELNYCVSLLSVHPSLL--PQQFF-------ESFDVDSAKLARLKLDPEAGIK 423
+G S ++ + L HP LL P+ E + A+ R I+
Sbjct: 609 KGTGSQPLKAIGLLKKLCNHPDLLQLPEDIEGCDHLIPEDYRSSMAQHNRSGFRGHTAIQ 668
Query: 424 TRF---------LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGK 474
T + L + +N+K+++ S Y + L LI ++ R+N VL +DG
Sbjct: 669 TCYSGKFSILERFLYKIRTESNDKIVLISNYTQTLDLI--EMMCRYNH---YGVLRLDGT 723
Query: 475 QDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISR 534
+ KRQ ++ N+P I L S+KA GINL+GA+R++L+D WNP ++QA++R
Sbjct: 724 MSINKRQKLVDRFNNPDGDEFIFLLSSKAGGCGINLIGANRLILVDPDWNPAADQQALAR 783
Query: 535 AYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R GQK+ +Y I++ T+E +RQ+ K+ S+ V
Sbjct: 784 VWRDGQKKDCFIYRFISTGTIEEKIYQRQSMKMSLSSCV 822
>gi|237837635|ref|XP_002368115.1| DNA repair protein RAD54, putative [Toxoplasma gondii ME49]
gi|211965779|gb|EEB00975.1| DNA repair protein RAD54, putative [Toxoplasma gondii ME49]
gi|221509119|gb|EEE34688.1| transcriptional regulator atrx, putative [Toxoplasma gondii VEG]
Length = 873
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 149/562 (26%), Positives = 240/562 (42%), Gaps = 115/562 (20%)
Query: 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFL-----QAY 127
HQR+G +F++ + G L E + G GCI++ G GKT ++ L Q
Sbjct: 165 HQRQGVKFMFDCLMG---LKEFQ-------GEGCILADDMGLGKTLQSITILWTLLEQNI 214
Query: 128 MKLHPRCR-PVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P R V++ P S++ W E +KW L G+ G + DN K
Sbjct: 215 EGTQPAVRRAVVVCPASLVNNWAAEIQKW-------------LQGR--CGCTPVADNCKE 259
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRN 246
++ + + + + IL SY F V L G+ +D+ V DE H +N
Sbjct: 260 K-----VVSKFEGFKYDRQSRILIASYETFRMHVH--RLEGVPIDM---VVCDEAHRLKN 309
Query: 247 DDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKA 306
D T A+ + ++R++LSGTP QN+ E +SL T R+
Sbjct: 310 DKTKTSLAIIELPAKKRLLLSGTPIQNDLDEFFALVSLCNPNVVGDAHTFRR-------- 361
Query: 307 KHASLISSIGRCANHRDD------EKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
++A+ I +GR + +D E+L EL F+ ++L + LP V
Sbjct: 362 RYANPIL-VGREPDATEDQQQLAAERLTELSSLTNLFILRRTNSLLAKVLPPKVVLNVFC 420
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVSLLSV------------------------HPSLL 396
+ QK E +SF+ C + + HPSL+
Sbjct: 421 RLTPLQK------EFYRSFLSSKSCRKMFTAEAEGKGGFTGRVLSSIQGLMKLCNHPSLV 474
Query: 397 PQQ--FFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS----------------TNEK 438
Q + F+ + L L+ G K R ++ E+S TN+K
Sbjct: 475 KSQAQMLQGFEKCEKYFSELDLE---GQKARSRMVRTEISGKLLLLARLLDVIRTTTNDK 531
Query: 439 VLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDP-SSQARIM 497
+++ S Y + L L R G V+ +DG+ +KKR + I NDP + + +
Sbjct: 532 IVLISNYTQTLDLFDRMCRDC-----GYPVMRLDGQTSIKKRHAMITKFNDPMNPHSFVF 586
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L S+KA G+NL+GA+R+VL D WNP ++QA++R +R GQK+ ++Y ++ T+E
Sbjct: 587 LLSSKAGGCGVNLIGANRLVLFDPDWNPANDKQALARVWRDGQKKSCYIYRFFSTGTIEE 646
Query: 558 DKLRRQARKVWWSNMVFPSSDG 579
+RQ K S M+ SDG
Sbjct: 647 KIYQRQICKDGLSAMLV--SDG 666
>gi|449296175|gb|EMC92195.1| hypothetical protein BAUCODRAFT_569497 [Baudoinia compniacensis
UAMH 10762]
Length = 965
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 146/558 (26%), Positives = 240/558 (43%), Gaps = 112/558 (20%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQR G F+++ + G D G G I++ G GKT T+ +
Sbjct: 278 KSLREHQRAGVAFLYECVMGMKQYD----------GEGAILADEMGLGKTLQTIALVWTL 327
Query: 128 MKLHPRC-------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P + +I+ P +++ W +EF KW GKE G V +
Sbjct: 328 LKQNPVYQDAPVIKKALIVCPVTLINNWRKEFTKW--------------LGKERVG-VFV 372
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTG--ILGLSYRLFEKLVSGDELSGILLDLPGLFVF 238
+++K +L + MG ++ + Y ++V D G +D+ +
Sbjct: 373 AESKK-----------TRLTDFTMGRSYSVMIIGYEKL-RMVQEDLQKGSGIDI---VIA 417
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQE-----------LENTLSLVRQ 287
DEGH + A+ +KT RRIILSGTP QN+ E L N S+ ++
Sbjct: 418 DEGHRLKTAQNKSALAIRSLKTDRRIILSGTPIQNDLAEFFTMVDFVNPGLLNKYSVFKR 477
Query: 288 EFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP----FVNVHKG 343
EF + R+ G A+ +D EK + E++A F+
Sbjct: 478 EFENPILKSRQPG------------------ASAKDVEKGEARSEELAKLTGMFILRRTA 519
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSF----------VELNYCVSLLSVHP 393
+L + LP VV +P E Q + +A+ G +F +EL + + P
Sbjct: 520 EILSKYLPPKTEYVVFCRPTEAQALVYRAIIGSPTFNAALGSSAVTLELINILKKVCNSP 579
Query: 394 SLLPQQFFESFDVDSAKL-----ARLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQY 445
+LL ++ + D +L + L P A K + L LL +T EKV++ S Y
Sbjct: 580 TLLLRKGDKGDDATKPELLGCVPSGLLRTPGASGKLQVLDSLLHRIRTTTEEKVVLVSNY 639
Query: 446 IEPLTLI---MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLAST 501
+ ++ + L +R+ L +DG KRQ ++ N P S + + L S
Sbjct: 640 TATMDILGNLLSSLSYRY--------LRLDGSTPAGKRQELVDRFNRSPPSNSFVFLLSA 691
Query: 502 KACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561
KA G+NL+GASR++L D+ WNP + QA++R +R GQKR +Y L+T L+ +
Sbjct: 692 KAGGVGLNLIGASRLILFDLDWNPATDLQAMARVHRDGQKRPCFIYRLVTQGALDEKIFQ 751
Query: 562 RQARKVWWSNMVFPSSDG 579
RQ K ++ + G
Sbjct: 752 RQVSKTGLADSIVDGKSG 769
>gi|221488620|gb|EEE26834.1| DNA repair and recombination protein RAD54, putative [Toxoplasma
gondii GT1]
Length = 872
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 149/562 (26%), Positives = 240/562 (42%), Gaps = 115/562 (20%)
Query: 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFL-----QAY 127
HQR+G +F++ + G L E + G GCI++ G GKT ++ L Q
Sbjct: 165 HQRQGVKFMFDCLMG---LKEFQ-------GEGCILADDMGLGKTLQSITILWTLLEQNI 214
Query: 128 MKLHPRCR-PVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P R V++ P S++ W E +KW L G+ G + DN K
Sbjct: 215 EGTQPAVRRAVVVCPASLVNNWAAEIQKW-------------LQGR--CGCTPVADNCKE 259
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRN 246
++ + + + + IL SY F V L G+ +D+ V DE H +N
Sbjct: 260 K-----VVSKFEGFKYDRQSRILIASYETFRMHVH--RLEGVPIDM---VVCDEAHRLKN 309
Query: 247 DDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKA 306
D T A+ + ++R++LSGTP QN+ E +SL T R+
Sbjct: 310 DKTKTSLAIIELPAKKRLLLSGTPIQNDLDEFFALVSLCNPNVVGDAHTFRR-------- 361
Query: 307 KHASLISSIGRCANHRDD------EKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
++A+ I +GR + +D E+L EL F+ ++L + LP V
Sbjct: 362 RYANPIL-VGREPDATEDQQQLAAERLTELSSLTNLFILRRTNSLLAKVLPPKVVLNVFC 420
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVSLLSV------------------------HPSLL 396
+ QK E +SF+ C + + HPSL+
Sbjct: 421 RLTPLQK------EFYRSFLSSKSCRKMFTAEAEGKGGFTGRVLSSIQGLMKLCNHPSLV 474
Query: 397 PQQ--FFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS----------------TNEK 438
Q + F+ + L L+ G K R ++ E+S TN+K
Sbjct: 475 KSQAQMLQGFEKCEKYFSELDLE---GQKARSRMVRTEISGKLLLLARLLDVIRTTTNDK 531
Query: 439 VLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDP-SSQARIM 497
+++ S Y + L L R G V+ +DG+ +KKR + I NDP + + +
Sbjct: 532 IVLISNYTQTLDLFDRMCRDC-----GYPVMRLDGQTSIKKRHAMITKFNDPMNPHSFVF 586
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L S+KA G+NL+GA+R+VL D WNP ++QA++R +R GQK+ ++Y ++ T+E
Sbjct: 587 LLSSKAGGCGVNLIGANRLVLFDPDWNPANDKQALARVWRDGQKKSCYIYRFFSTGTIEE 646
Query: 558 DKLRRQARKVWWSNMVFPSSDG 579
+RQ K S M+ SDG
Sbjct: 647 KIYQRQICKDGLSAMLV--SDG 666
>gi|167385507|ref|XP_001737376.1| DNA repair and recombination protein RAD54B [Entamoeba dispar
SAW760]
gi|165899842|gb|EDR26336.1| DNA repair and recombination protein RAD54B, putative [Entamoeba
dispar SAW760]
Length = 764
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 144/543 (26%), Positives = 247/543 (45%), Gaps = 73/543 (13%)
Query: 49 DPFTHAQGTVWE---LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNG 105
+PF++ E L+ + K + PHQ EG +F++ I GG G
Sbjct: 171 NPFSYCIDDKKEPAILIDPYIGKFLRPHQIEGVKFMYHCIM-------------RGGECG 217
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW-GIDIPFYNL 164
CI++ G GKT T+ + K + VI+ P+S++ WE+EFKKW G++
Sbjct: 218 CILADEMGLGKTLQTITLIWTVYKQCNIKKIVIVCPQSLIGNWEKEFKKWLGVE------ 271
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
P +G ++ +++ +++ Y +L +SY V +
Sbjct: 272 RIPVQTGSSDSSMKEKVND------------FIRDY-----IPVLIISYEQVRSHVETLK 314
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
+ I GL V DEGH +N + +L + R IILSGTP QN LE+ SL
Sbjct: 315 KTKI-----GLIVCDEGHRIKNLMSKTNSSLKALGAPRHIILSGTPVQNG---LEDFYSL 366
Query: 285 VRQEFGEVLRTVRKSGR----EISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNV 340
+ L T+ R I KA+ + +SI E+ KEL K+ +V
Sbjct: 367 IEFCSPGCLGTLSSFKRVFAIPIQKAQDGN--ASIEEI--QLGTERAKELTNKLNDYVLR 422
Query: 341 HKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSL--------LSVH 392
V ++ LP V+ ++P Q +L K + +L+ C +L L H
Sbjct: 423 RTSQVNEKYLPDKTEIVLFIKPSHLQIKLYKIMLKELDKKKLDQCGALKYIQLFTKLCNH 482
Query: 393 PSLLPQQFFES----FDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQY 445
P+L+ + E + D + + ++ E+ K + ++ + + EKV++ S Y
Sbjct: 483 PALISKYLMEEKISLNENDENCIKGVTINEESSNKFNITIQFIKEIIIKSKEKVVLVSNY 542
Query: 446 IEPLTLIMEQLRHRFNWREGQ--EVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKA 503
+ L L + +++ + L +DGK K+R + +ND SS I+L S+KA
Sbjct: 543 TKTLDLFEMYFKQEEEYKQKKIFNYLRLDGKTSQKQRDIIVEKINDKSSNFNILLLSSKA 602
Query: 504 CCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQ 563
G+NL+G SR++L D WNP ++QA++R +R GQ++ +Y ++ + T+E +RQ
Sbjct: 603 GGVGLNLIGCSRLILFDPDWNPAKDKQAMARIWRDGQQKKAMIYRMLCTGTIEEKIYQRQ 662
Query: 564 ARK 566
+K
Sbjct: 663 LQK 665
>gi|332219863|ref|XP_003259077.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair and recombination
protein RAD54-like [Nomascus leucogenys]
Length = 747
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 140/535 (26%), Positives = 237/535 (44%), Gaps = 69/535 (12%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W+ + S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVKFLWECV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG 187
++ P C+P I ++++++ K W YN L G+ A+ D +
Sbjct: 201 LRQSPECKPEI--DKAVVVSPSSXVKNW------YNEVGKWLGGRIQPLAI---DGGSKD 249
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND 247
L ++ ++ + IL +SY F V + + GL + DEGH +N
Sbjct: 250 EIDQKLEGFMNQRGARVPSPILIISYETFRLHVGVLQKGSV-----GLVICDEGHRLKNS 304
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAK 307
+ ++AL + T RR+++SGTP QN+ E SLV +L T E K
Sbjct: 305 ENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGT----AHEFKKHF 357
Query: 308 HASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI--LQ 361
++ A+ D +E+L+EL + + +L + LP VV L
Sbjct: 358 ELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLT 417
Query: 362 P--DEFQKRLCKAVEGVKSFVE---------LNYCVSLLSVHPSLLPQQ-------FFES 403
P E KR + + + E + L HP+L+ + F +
Sbjct: 418 PLQTELYKRFLRQAKPEEELREGKMSVSSLSSITSLKKLCNHPALIHDKCVEEEDGFVGA 477
Query: 404 FDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQLRHRF 460
D+ L+P+ K L +L ++ +++KV++ S Y + L L + R R
Sbjct: 478 LDLFPPGYNSKTLEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRAR- 536
Query: 461 NWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVL 518
LY +DG +KKR + N PSS + + S+KA G+NL+GA+R+V+
Sbjct: 537 ------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVM 590
Query: 519 LDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 591 FDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
>gi|403160793|ref|XP_003321236.2| hypothetical protein PGTG_02278 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375170399|gb|EFP76817.2| hypothetical protein PGTG_02278 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1065
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 137/555 (24%), Positives = 242/555 (43%), Gaps = 80/555 (14%)
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
+V + + + PHQ +G +F+++ G L E+ GG+GCI++ G GK+
Sbjct: 402 VVDPSIARSLRPHQVDGLKFMYECTMG---LREV-------GGHGCILADEMGLGKSIQA 451
Query: 121 LVFLQAYMKLHPRC-------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKE 173
+ L ++ +P R +I+ P +++ W+ E KW L + L+
Sbjct: 452 ISLLWTLLRQNPISGQGPVIKRAMIVCPVTLVKNWKREIHKW--------LGRSRLNVFT 503
Query: 174 NNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP 233
+G K ++ + +L + Y L E++ I +
Sbjct: 504 ADGKCDF-----------------KQFTCSLYYNVLVIGYEKLRTL--SKEVNSIYPPI- 543
Query: 234 GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVL 293
GL + DEGH R+ + +AL +KT+RR++LSGTP QNN E + V +
Sbjct: 544 GLIIADEGHRLRSIEAKTTQALRSLKTKRRVVLSGTPIQNNLTEYYAMVDFVNPGILDDY 603
Query: 294 RTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGL 353
RT +K + + + R E+L ++ +V V+QE LP
Sbjct: 604 RTFKKKFEQPILKSREPCCNPVQRSEGEARAEELAKMSRH---YVLRRGSEVIQEHLPPR 660
Query: 354 RHSVVILQPDEFQKRLCKAV-----------EGVKSFVELNYCVSLLSVHPSLLPQQF-F 401
V + P Q+ + +AV + + L + LL P LL ++
Sbjct: 661 HDYCVFISPTTVQRNIYEAVLDSPETRAIFSGDISQHLVLMNTLKLLCNSPGLLMNEYSI 720
Query: 402 ESFDVDSAKL-------ARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIME 454
+S S+ L ++L + +FL IL + NEK+++ S + + L ++
Sbjct: 721 KSLGQISSTLFPAWVTREDVQLSGKLIALAKFLDILKK-KNNEKIILVSNFTKTLDIVES 779
Query: 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR-IMLASTKACCEGINLVGA 513
+ +DGK +R + + V N S+ A+ I L S+K+ G+NL+GA
Sbjct: 780 HCKASH-----YPFCRLDGKTAQNQRDNIVQVFNRSSASAQFIFLLSSKSGGVGLNLIGA 834
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSN-- 571
SR++L D WNP + QA++R +R GQ++ H+Y +T+ T++ +RQ K+ +
Sbjct: 835 SRLILFDGDWNPATDLQAMARIWRQGQQKPCHIYRFLTTGTIDECIFQRQVTKIGLATDL 894
Query: 572 MVFPSSD----GGGN 582
M P + GGGN
Sbjct: 895 MSAPKAGEETAGGGN 909
>gi|164660184|ref|XP_001731215.1| hypothetical protein MGL_1398 [Malassezia globosa CBS 7966]
gi|159105115|gb|EDP44001.1| hypothetical protein MGL_1398 [Malassezia globosa CBS 7966]
Length = 713
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 130/511 (25%), Positives = 223/511 (43%), Gaps = 84/511 (16%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ EG +F+++ G + + +GCI++ G GKT + L
Sbjct: 237 KILRPHQIEGVKFLFRCTTGMV----------SENAHGCIMADEMGLGKTLQCITLLWTL 286
Query: 128 MKLHPRC------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
+K P + +++ P S++ W E KW G G++AL
Sbjct: 287 LKQSPNAGKSTIQKAIVVCPSSLVRNWANELVKW--------------LGASAPGSLALD 332
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVF 238
R + + R+ + ++ +SY R ++L+ E+ GL +
Sbjct: 333 GRLSREQMFESVQRWADCSGRAIVHPVMIVSYETLRNLQELLGNTEI--------GLLLC 384
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-------RQEFGE 291
DEGH +N D+ F++L+ +K +RR+ILSGTP QN+ E ++ R EF +
Sbjct: 385 DEGHRLKNADSMTFQSLAMLKVKRRVILSGTPIQNDLSEYFALINFAIPDMLGNRNEFRK 444
Query: 292 VLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLP 351
GR+ + +GR EKL++L ++PF+ +L + LP
Sbjct: 445 HFELDILRGRDAGATEKEK---EVGR-------EKLQQLSGMVSPFIIRRTNDILSKYLP 494
Query: 352 GLRHSVVILQPDEFQKRL----------CKAVEGVKSF-VELNYCVSLLSVHPSLL---- 396
VV + FQ L + + G+ S ++ + L HP LL
Sbjct: 495 VKYEHVVFCRLSPFQVDLYNLFLRSPVIARLLRGIGSQPLKAIGILKKLCNHPDLLNLPA 554
Query: 397 -----PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTL 451
+ + E + + + L + + RFL + T++K+++ S Y + L L
Sbjct: 555 DLEGSEELYPEGYRPGDRRNVAVGLSGKLAVLERFL-TSMRAKTDDKIVLISNYTQTLDL 613
Query: 452 IMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLV 511
R R W +DG ++ KRQ+ ++ N+P I L S+KA G+NL+
Sbjct: 614 FERLCRSR-RW----GFFRLDGTMNINKRQNLVDRFNNPEGSEFIFLLSSKAGGCGLNLI 668
Query: 512 GASRVVLLDVVWNPFVERQAISRAYRLGQKR 542
GA+R+VL D WNP ++QA++R +R GQK+
Sbjct: 669 GANRLVLFDPDWNPASDQQALARVWRDGQKK 699
>gi|407035016|gb|EKE37494.1| DNA repair protein, putative [Entamoeba nuttalli P19]
Length = 764
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 149/544 (27%), Positives = 249/544 (45%), Gaps = 75/544 (13%)
Query: 49 DPFTHAQGTVWE---LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNG 105
+PF + E L+ + K + PHQ EG +F++ I GG G
Sbjct: 171 NPFAYCIDDKKEPAILIDPYIGKFLRPHQIEGVKFMYHCIM-------------RGGECG 217
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW-GIDIPFYNL 164
CI++ G GKT T+ + K + VI+ P+S++ WE+EFKKW G++
Sbjct: 218 CILADEMGLGKTLQTITLIWTVYKQCNIKKIVIVCPQSLIGNWEKEFKKWLGVE------ 271
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
P +G ++ +++ +++ Y +L +SY V +
Sbjct: 272 RIPVQTGSSDSSMKEKVND------------FIRDY-----IPVLIISYEQVRSHVETLK 314
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
+ I GL V DEGH +N + +L + R IILSGTP QN LE+ SL
Sbjct: 315 KTKI-----GLIVCDEGHRIKNLMSKTNSSLKALGGSRHIILSGTPVQNG---LEDFYSL 366
Query: 285 VRQEFGEVLRTVRKSGR----EISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNV 340
+ L T+ R I KA+ + +SI E+ KEL K+ +V
Sbjct: 367 IEFCSPGCLGTLSSFKRVFAIPIQKAQDGN--ASIEEI--QLGTERAKELTNKLNDYVLR 422
Query: 341 HKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSL--------LSVH 392
V ++ LP V+ ++P Q +L K + +L+ C +L L H
Sbjct: 423 RTSQVNEKYLPDKTEIVLFIKPSYLQIKLYKIMLKELEKKKLDQCSALKYIQLFTKLCNH 482
Query: 393 PSLLPQQFFE---SFDVDSAKLAR-LKLDPEAG----IKTRFLLILLELSTNEKVLVFSQ 444
PSL+ + E S + + K + + L+ E+ I +F+ +L + + EKV++ S
Sbjct: 483 PSLISKYLTEEKISLNENDEKCIKGISLNEESSNKFNITIQFIKEIL-IKSKEKVVLVSN 541
Query: 445 YIEPLTLIMEQLRHRFNWREGQ--EVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTK 502
Y + L L + ++ + L +DGK K+R + +ND SS I+L S+K
Sbjct: 542 YTKTLDLFEIYFKQEEENKQKKIFNYLRLDGKTSQKQRDIIVEKINDKSSNYNILLLSSK 601
Query: 503 ACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRR 562
A G+NL+G SR++L D WNP ++QA++R +R GQ++ +Y ++ + T+E +R
Sbjct: 602 AGGVGLNLIGCSRLILFDPDWNPAKDKQAMARIWRDGQQKKAMIYRMLCTGTIEEKIYQR 661
Query: 563 QARK 566
Q +K
Sbjct: 662 QLQK 665
>gi|115492543|ref|XP_001210899.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114197759|gb|EAU39459.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1329
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 153/552 (27%), Positives = 234/552 (42%), Gaps = 96/552 (17%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+++ + G D + G G I++ G GKT T+ L
Sbjct: 279 KHLRPHQREGVKFLYECVMGMRDFN----------GEGAILADDMGLGKTLQTITLLWTL 328
Query: 128 MKLHP--RCRPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P PV I+ P +++ W EF+KW G E G
Sbjct: 329 LKQNPVYESPPVVKKALIVCPVTLINNWRREFRKW--------------LGNERIGVFVY 374
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTG----ILGLSYRLFEKLVSGDE--LSGILLDLPG 234
D RKR L + MG I+G +EKL S E G +D+
Sbjct: 375 DDKRKR------------LTDFTMGRAYNIMIVG-----YEKLRSVQENLAKGAGVDI-- 415
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294
+ DEGH + +A+ + +R+ILSGTP QN+ +E + LV VL
Sbjct: 416 -IIADEGHRLKTLQNKSGQAIQSLNANKRVILSGTPIQNDLKEFFAAVDLVNPG---VLG 471
Query: 295 TVRKSGREISKAKHASLISSIGRCANHRDDEKLK----ELKEKIAPFVNVHKGTVLQESL 350
T + RE ++ A +D EK + EL+E + F+ +L + L
Sbjct: 472 TFKSFIREF----EGPIVRRRQPEATEKDIEKGEARNEELRELTSKFILRRTADILADYL 527
Query: 351 PGLRHSVVILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSVHPSLL-PQQ 399
P V+ P Q + + + +S ++L + L PSLL P+
Sbjct: 528 PPKTEYVLFCDPTPTQANIYQNVLASPVFQSVIGNAESALQLITILKKLCNSPSLLSPKN 587
Query: 400 FFESFDVDS--AKLARL------KLDPEAGIKTRFL---LILLELSTNEKVLVFSQYIEP 448
+ ++ A LA L P + K R L L L +T+EK+++ S Y
Sbjct: 588 NKDQAPSETVAALLASLPSNLLRHFSPSSSAKVRVLDQLLYKLHTTTSEKIVLVSNYTS- 646
Query: 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND-PSSQARIMLASTKACCEG 507
L L +DG +KRQS + N P+ ++ L S KA G
Sbjct: 647 ----TLNLLATLLTALSLPFLRLDGSTPAQKRQSLVEDFNRLPADRSFAFLLSAKAGGTG 702
Query: 508 INLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567
+NL+GASR+VL DV WNP + QA++R +R GQKR +Y ++ +LE +RQ K+
Sbjct: 703 LNLIGASRLVLFDVDWNPATDIQAMARIHRDGQKRACRIYRILLKGSLEEKIWQRQVTKL 762
Query: 568 WWSNMVFPSSDG 579
++ V DG
Sbjct: 763 GLADSVMEHKDG 774
>gi|255930267|ref|XP_002556693.1| Pc06g00840 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581306|emb|CAP79077.1| Pc06g00840 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 978
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 151/554 (27%), Positives = 239/554 (43%), Gaps = 94/554 (16%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+++ + G + G G I++ G GKT T+ L
Sbjct: 281 KNLRPHQREGVKFLYECVMGMRSFN----------GEGAILADDMGLGKTLQTIALLWTL 330
Query: 128 MKLHP--RCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P PVI + P +++ W +EF+KW G E G
Sbjct: 331 LKQNPVFEAPPVIKKALIVCPVTLINNWRKEFRKW--------------LGNERIGVFVF 376
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL----SGILLDLPGLF 236
D KR L + K ++ + I+G +EKL + E SG+ +
Sbjct: 377 DDKSKR------LTDFTKGRAYSIM--IVG-----YEKLRTVQEALANSSGV-----DII 418
Query: 237 VFDEGH---TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGEV 292
+ DEGH T +N ++LS +K R+ILSGTP QN+ +E + LV G
Sbjct: 419 IADEGHRLKTLQNKSGLAIQSLSAVK---RVILSGTPIQNDLREFFAAVDLVNPGILGSF 475
Query: 293 LRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPG 352
+R+ I +++ S + + + +EL+E + F+ +L + LP
Sbjct: 476 KSFIREFETPIVRSRQPEATSK----DIEKGESRGEELRELTSQFMLRRTADILAKYLPP 531
Query: 353 LRHSVVILQPDEFQKRLCKAV----------EGVKSFVELNYCVSLLSVHPSLL------ 396
V+ +P Q + KAV +S ++L + LS PSLL
Sbjct: 532 KTEYVLFCKPTRPQANIYKAVLASPIFQSAMGNAESALQLITILKKLSNSPSLLTAKNND 591
Query: 397 --PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL---STNEKVLVFSQYIEPLTL 451
P + + + L P + K R L LL+ T+EK+++ S Y
Sbjct: 592 DTPNETMTALIASIPQPLHRHLSPSSSAKIRVLDQLLDTMRSKTDEKIVLVSNYTS---- 647
Query: 452 IMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND-PSSQARIMLASTKACCEGINL 510
L G L +DG +KRQ ++ N P+S L S KA G+NL
Sbjct: 648 -TLSLLATLLTSLGLPYLRLDGSTPAQKRQGLVDDFNRLPASSCFAFLLSAKAGGTGLNL 706
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS 570
+GASR++L DV WNP + QA++R +R GQKR +Y ++ +LE +RQ K+ +
Sbjct: 707 IGASRLILFDVDWNPATDIQAMARIHRDGQKRPCRIYRILLKGSLEEKIWQRQVTKLGLA 766
Query: 571 NMVF---PSSDGGG 581
+ V SS+GG
Sbjct: 767 DSVMQEKSSSNGGA 780
>gi|254567481|ref|XP_002490851.1| DNA-dependent ATPase [Komagataella pastoris GS115]
gi|238030647|emb|CAY68571.1| DNA-dependent ATPase [Komagataella pastoris GS115]
gi|328351234|emb|CCA37634.1| DNA repair and recombination protein RAD54B [Komagataella pastoris
CBS 7435]
Length = 840
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 150/538 (27%), Positives = 243/538 (45%), Gaps = 79/538 (14%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F++ + G +L GCI++ G GKT T+ + +K +
Sbjct: 213 PHQREGVKFLYNCLDGSKELPH----------KGCILADEMGLGKTLTTITLIWTLLKQN 262
Query: 132 ------PRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNR 184
P + V ++ P +++ W+ EF+KW + ++ E+S N ++
Sbjct: 263 QVDHKRPAVKKVLVVCPVTLIHNWKREFRKW---LGMNRVSILEMSSASN------VEED 313
Query: 185 KRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTP 244
KR G R + IL L Y +KL +E+S I +DL V DEGH
Sbjct: 314 KRSVINFGRTRVYQ---------ILILGYEKLQKLT--NEISQINVDL---LVCDEGHRL 359
Query: 245 RNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKSGREI 303
+N + + K+L+ + R+IIL+GTP QN+ E N ++ V+ G+ R R I
Sbjct: 360 KNSNNKVMKSLTSFQIPRKIILTGTPIQNDLNEFYNIINFVQPGIVGDFASFNRDYMRPI 419
Query: 304 SKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQP- 362
+A+ I+ + R +EK L E F+ K + + + ++++ P
Sbjct: 420 LQARE---INCLNRKIIKAGNEKSNSLVELTQKFILRRKAKDINTNFLPPKTELILMVPM 476
Query: 363 DEFQKRLCKAVEGVKS-----------FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKL 411
E Q+ L K + F++ + + PSLL D
Sbjct: 477 TELQQELYKDIIETNQAKLGLINDRNFFLQKILILRKICNSPSLLK---------DEPDF 527
Query: 412 ARLKLDP---EAGIKTRFLLI--LLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQ 466
AR L IK LL+ L E +TNEK ++ S + + L ++ + H NW+ +
Sbjct: 528 ARYNLGNRFNSGKIKLTVLLLRKLFE-TTNEKCVIVSNFTKTLDVLQLIIEHN-NWKYHR 585
Query: 467 EVLYMDGKQDVKKRQSSINVLNDPSSQAR-IMLASTKACCEGINLVGASRVVLLDVVWNP 525
+DG K R + N+ + R IML S+KA G+NL+GASR++L D WNP
Sbjct: 586 ----LDGSS--KGRDKIVRDFNESPQKDRFIMLLSSKAGGVGLNLIGASRLILFDNDWNP 639
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGND 583
V+ QA++R +R GQKR +Y L T T++ L+RQ K S+ +D +D
Sbjct: 640 SVDIQAMARVHRDGQKRHTFIYRLYTKGTIDEKILQRQLMKQNLSDKFLDDNDSSKDD 697
>gi|403221169|dbj|BAM39302.1| recombinational repair protein [Theileria orientalis strain
Shintoku]
Length = 788
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 142/549 (25%), Positives = 236/549 (42%), Gaps = 107/549 (19%)
Query: 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP 132
HQR+G +FI+ + G D + G GCI++ G GKT ++ + +
Sbjct: 119 HQRQGVQFIFDCLMGLKDFE----------GRGCILADDMGLGKTLQSITVMWTLLNQGL 168
Query: 133 RCRP---------------VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGA 177
+P II P S++ WE E KKW L GK A
Sbjct: 169 DNKPGKKEKRNWSVAARKCAIICPASLVNNWESEIKKW-------------LRGKCPCTA 215
Query: 178 VALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFV 237
+A + R R +I + + + + ++ SY + + L G+ +DL +
Sbjct: 216 IA---DSSRER----VISSFEGFKYDRNSRVIISSYETYR--MHCGYLEGVNIDL---LI 263
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGEVLRTV 296
DE H +ND T +++S + R++LSGTP QN+ E + +SL + G+V
Sbjct: 264 CDEAHRLKNDKTRTSQSISASSAKMRLMLSGTPIQNDLNEFYSLISLCNPDVLGDVNNFR 323
Query: 297 RKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHS 356
+ I + + + E+L EL FV +L + LP
Sbjct: 324 KNFANPILIGREPDATPA----EQQKASERLLELSNITNQFVLRRTNALLAKVLPPKIIM 379
Query: 357 VVILQPDEFQKRLCKAVEGVKSFVELNYCVSL-------------------LSVHPSLLP 397
V + + QK+L +SF+ C ++ L HP LL
Sbjct: 380 NVFCKLSDVQKKL------YRSFITSKKCKNMINQETVPKSGLTAIQSLMKLCNHPYLLK 433
Query: 398 QQ-FFESFDVDSAKLA-------RLKLDPEAGIKTRFLLIL-----LELSTNEKVLVFSQ 444
+ S DVDS A + K + + + +FLL+ + S+N++V++ S
Sbjct: 434 KGGVLSSPDVDSLLTAIEDNSKNKYK-NCRSDLSGKFLLLFRLLYHIRRSSNDRVVIISN 492
Query: 445 YIEPLTL---IMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAST 501
Y + L L + ++ ++ F +DG +KKR + NDP+S + I L S+
Sbjct: 493 YTQTLDLFERLCKECKYPFE--------RLDGATSIKKRHKLVTSFNDPNSNSFIFLLSS 544
Query: 502 KACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWD--K 559
KA GINL+GA+R+VL D WNP ++QA++R +R GQ +V ++Y +S T+E +
Sbjct: 545 KAGGCGINLIGANRLVLFDPDWNPANDKQALARVWRDGQNKVCYIYRFFSSGTIEEKIYQ 604
Query: 560 LRRQARKVW 568
+ Q R W
Sbjct: 605 VSSQCRLRW 613
>gi|195020242|ref|XP_001985154.1| GH16907 [Drosophila grimshawi]
gi|193898636|gb|EDV97502.1| GH16907 [Drosophila grimshawi]
Length = 2013
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 144/550 (26%), Positives = 238/550 (43%), Gaps = 83/550 (15%)
Query: 65 DVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFL 124
D ++ P+Q EG ++ + GID I++ G GKT T+ FL
Sbjct: 724 DTGMQLHPYQIEGINWLRYSWGQGID---------------TILADEMGLGKTIQTVTFL 768
Query: 125 QA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDN 183
+ Y + H R ++ P S L+ WE EF+ W D FY + G +++ AV +
Sbjct: 769 YSLYKEGHCRGPFLVAVPLSTLVNWEREFELWAPD--FYCIT---YIGDKDSRAVIRENE 823
Query: 184 RKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGL-------F 236
G + + +L + + +L SY L I +D P L
Sbjct: 824 LTFEEGAIRGTKVSRLRTTQYKFNVLLTSYEL------------ISMDAPCLGSIDWAVL 871
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTV 296
V DE H +++ + F+ L+ +++L+GTP QNN +EL + L+
Sbjct: 872 VVDEAHRLKSNQSKFFRILNSYAIAYKLLLTGTPLQNNLEELFHLLNF------------ 919
Query: 297 RKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHS 356
+S+ K L + G A+ +E++K L E + P + T + +++P
Sbjct: 920 ------LSRDKFNDLQAFQGEFADVSKEEQVKRLHEMLGPHMLRRLKTDVLKNMPSKSEF 973
Query: 357 VVILQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFE 402
+V ++ QK+ K + K++ LN SL+++ HP L P E
Sbjct: 974 IVRVELSAMQKKFYKFIL-TKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSASEE 1032
Query: 403 SFDVDSAKLARLKLDPEAGIKTRFLLILLEL-STNEKVLVFSQYIEPLTLIMEQLRHRFN 461
+ L L AG +L +L S N +VL+FSQ + L ++ + L
Sbjct: 1033 APTSAGGIYELLSLTKAAGKLVLLSKMLKQLKSQNHRVLIFSQMTKMLDILEDFL----- 1087
Query: 462 WREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
EG++ Y +DG RQ +I+ N P +Q + L ST+A GINL A V++
Sbjct: 1088 --EGEQYKYERIDGSITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIY 1145
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDG 579
D WNP + QA SRA+R+GQ V +Y +T ++E + RK+ +++V G
Sbjct: 1146 DSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMG 1205
Query: 580 GGNDQTTASE 589
G T E
Sbjct: 1206 GKGANFTKQE 1215
>gi|365982629|ref|XP_003668148.1| hypothetical protein NDAI_0A07510 [Naumovozyma dairenensis CBS 421]
gi|343766914|emb|CCD22905.1| hypothetical protein NDAI_0A07510 [Naumovozyma dairenensis CBS 421]
Length = 866
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 154/581 (26%), Positives = 253/581 (43%), Gaps = 90/581 (15%)
Query: 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTST-------------GGGNGCIISHAP 112
+ K + HQREG +FI+ I G L +++ ST+ NGC+++
Sbjct: 253 ISKFLRKHQREGVKFIYDCING---LSQVEASTAVVDPTQQSMILEKNSDINGCLLADEM 309
Query: 113 GTGKTGLTLVFLQAYMKLHPRCRPV-----------------IIAPRSMLLTWEEEFKKW 155
G GKT +T+ + K P + + II P +++ W+ EFKKW
Sbjct: 310 GLGKTLMTIAVIWTLYKQTPLVKNIPCSQSGVPLSGLCKKFLIICPVTLIGNWKREFKKW 369
Query: 156 GIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL 215
NLN+ + +N + N + KV V + MG
Sbjct: 370 ------LNLNRIGILTLNSNNTPEMDRNAVKNFLKVQRTYQVLI----MG---------- 409
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
+EK++S +L + V DEGH ++ + + + L + +R+I+LSGTP QN+
Sbjct: 410 YEKVLSVSAELTNQKNLIDMLVCDEGHRLKSGTSKVLQVLKNLDVKRKILLSGTPIQNDL 469
Query: 276 QELENTLSLVRQE-FGEVLRTVRKSGREISKAKHAS-----LISSIGRCANHRDDEKLKE 329
E + + G ++ I++A+ S I +G +E+ +E
Sbjct: 470 NEFYTIIDFINPGILGSFPYFKKRYMVPITRARDTSNRYNEEILELG-------EERSRE 522
Query: 330 LKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQ-KRLCKAVEGVK---SFVELNYC 385
+ E F ++L E LP ++ +P E Q + A+ G K + N
Sbjct: 523 MIEITKQFTLRRTNSILTEYLPPRTDIILFCKPTETQLQAFDNAIRGAKLDFNTASFNST 582
Query: 386 VSLLSV------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE-LSTN-- 436
+ L+++ PSL+ + + +D ++ R + K L+ LL+ L TN
Sbjct: 583 LGLITLLKKICNSPSLIKNDSYFTSKIDHSQYQRANFNVLNSGKLMVLMSLLKHLRTNCP 642
Query: 437 -EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQA 494
EK+++ S Y + L +I L E +DG K+R S + N +PS+ A
Sbjct: 643 EEKIVIVSNYTQTLDIIENLL-----LSEQMIFCRLDGSTLPKQRDSIVMSFNRNPSTFA 697
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L S K+ G+NLVGASR+VL D WNP ++ QA+SR +R GQKR ++Y LIT+
Sbjct: 698 --FLLSAKSGGVGLNLVGASRLVLFDNDWNPSIDLQAMSRIHRDGQKRPCYIYRLITTGC 755
Query: 555 LEWDKLRRQARKVWWSNMVFPSS--DGGGNDQTTASEPLED 593
++ L+RQ K S SS + ND + L D
Sbjct: 756 IDEKILQRQLMKHNLSQKFLDSSIENTNVNDDLFDKQDLRD 796
>gi|357128919|ref|XP_003566117.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair and recombination
protein RAD54B-like [Brachypodium distachyon]
Length = 474
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 118/412 (28%), Positives = 198/412 (48%), Gaps = 43/412 (10%)
Query: 199 LYSWKMGTGILGLSYRLFEKLVSGD-------ELSGILLDLPGLFVFDEGHTPRNDDTCM 251
L SW+ IL L Y F K++ D +LL + L + DEG TPRN +T +
Sbjct: 50 LNSWQSNMSILFLGYEQFSKIICDDGGESVAAACRDMLLMVLNLLIMDEGDTPRNKETNL 109
Query: 252 FKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF----------GEVLRTVRKSGR 301
+LS++ ++++ GT QN+ +++ N L+LVR F ++ V SG
Sbjct: 110 QDSLSQVXIPHKVVMYGTLCQNHVKKVVNVLNLVRPMFLNRGSSRPIARRIMSQVVISGH 169
Query: 302 EISKAK---HASLISSIGRCANH-----RDDEKLKELKEKIAPFVNVHKGTVLQESLPGL 353
I + + S+ H R + ++ L+E ++ + G +L+E L G+
Sbjct: 170 RIPRKPLKFDKAFTESVQETLLHDENFTRKEHVIRCLRELTKDVIHYYMGDILRE-LLGI 228
Query: 354 RHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLAR 413
V L+ QK + +E KS ++ + + L +HP L ++ ++ D A
Sbjct: 229 TDFSVFLKLSPSQKEFVQQLEAYKS-LKRSTVGTTLYMHPCL--KKMSKAGSADRANNLT 285
Query: 414 LKLDP-------EAGIKTRFLLILLELST--NEKVLVFSQYIEPLTLIMEQLRHRFNWRE 464
D +K F +L+L++ EK+L FSQ+ P+ + L + F WR
Sbjct: 286 HAXDSLVESMHLRDSVKASFFNNILKLASFAREKLLAFSQHTLPMXERL--LVNMFGWRV 343
Query: 465 GQEVLYMDGKQDVKKRQSSINVLNDP---SSQARIMLASTKACCEGINLVGASRVVLLDV 521
G+E+ + G + + D S+ ++++ S KAC EGI+LVGASRV +LDV
Sbjct: 344 GKEIFVITGDTSAVDSRVDRELAMDQFHNSAHSKVLFGSIKACGEGISLVGASRVAILDV 403
Query: 522 VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
NP+V RQAI R +R GQ+R V VY L+ +++ E + L +K + M+
Sbjct: 404 HLNPYVTRQAIGRGFRPGQQRXVFVYRLVATDSQEENLLETTLKKEGSAKML 455
>gi|50311185|ref|XP_455616.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644752|emb|CAG98324.1| KLLA0F11814p [Kluyveromyces lactis]
Length = 931
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 152/581 (26%), Positives = 258/581 (44%), Gaps = 84/581 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDL--DELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQ 125
K + PHQREG +F++ + + DE GC+++ G GKT +T+ +
Sbjct: 276 KTLRPHQREGVKFLYDCVMNMVHTKGDESMILERDDDIKGCLLADEMGLGKTLMTITLIW 335
Query: 126 AYMKLHPR---------------CRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELS 170
+K P + +I+ P +++ W++EFKKW +P +
Sbjct: 336 TLLKQTPYPTIINQRGVTLAGEISKVLIVCPVTLIGNWKKEFKKW---LPMNRI------ 386
Query: 171 GKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS-GDELSGIL 229
G + L K + ++K+ I+G +EKL+S DEL
Sbjct: 387 -----GVLTLHSRNSPTEDKAQVRSFLKV-PRTYQVLIVG-----YEKLLSIKDELQNEK 435
Query: 230 LDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ-- 287
+L L + DEGH +N D+ + K L + ++I+LSGTP QN+ +E + +
Sbjct: 436 RNL-DLVICDEGHRLKNKDSKILKVLQSLDIEKKIVLSGTPIQNDLEEFYTIIDFINPGI 494
Query: 288 --EFG----EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVH 341
FG E + + +S R+++ ++ +L+ R D +L E F+
Sbjct: 495 LGSFGRFKREYILPIARS-RDVNAKQNQTLVEQ----GLLRSD----QLIEITKRFILRR 545
Query: 342 KGTVLQESLPGLRHSVVILQP-----DEFQKRLCKAVEGVKSF--VELNYCVSLLSVHPS 394
+LQ+ LP ++ +P + F K L EG +F + N + L+++
Sbjct: 546 TNEILQQYLPPRTDLIIFCKPTAEQVEAFHKIL---TEGQLNFSNMTFNSSLGLITLFKK 602
Query: 395 LL-PQQFFESFDVDSAKLARLKLDPEAGI----KTRFLLIL---LELSTNEKVLVFSQYI 446
+ + ++ +L++++ +G K R LL L L+ T+EKV+V S Y
Sbjct: 603 ICNSTRLIKTDPYYEERLSQVQTSSTSGKFTSGKLRILLSLLHELKTKTDEKVVVISNYT 662
Query: 447 EPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVL-NDPSSQARIMLASTKACC 505
+ L +I EG +DG K R + NDPS + L S K+
Sbjct: 663 QTLDIIEGHCSS-----EGYTSARLDGSTATKTRDQIVTSFNNDPS--IFVFLLSAKSGG 715
Query: 506 EGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQAR 565
G+NL+GASR+VL D WNP ++ QA+SR +R GQ+R +Y L+T+ ++ L+RQ
Sbjct: 716 VGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQRRPCFIYRLVTTGCIDEKILQRQLM 775
Query: 566 KVWWSNMVFPS-SDGGGNDQTT-ASEPLEDKILEEMAQLYN 604
K+ S S +D ND E L+D ++ L N
Sbjct: 776 KIALSKKFLDSATDQSKNDDDLFQQEELKDLFTINLSTLSN 816
>gi|344228983|gb|EGV60869.1| hypothetical protein CANTEDRAFT_137339 [Candida tenuis ATCC 10573]
Length = 878
Score = 145 bits (366), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 139/542 (25%), Positives = 239/542 (44%), Gaps = 78/542 (14%)
Query: 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQ 125
+ K + PHQ+EG F++ + G + G NG +++ G GKT +++ +
Sbjct: 206 LSKVLRPHQKEGVSFMYNGVMG-----------YSFGANGVLLADDMGLGKTLMSITLIW 254
Query: 126 AYMKLHPR-------CRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV 178
+K P + +I+ P +++ W EFKKW N+N+ + +NN
Sbjct: 255 TLIKQSPNPEKKNEANKVLIMCPVTLINNWRREFKKW------LNINQIGILVVDNNSTN 308
Query: 179 ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFV 237
D R +S ++ +SY E+L++ +E +LD+ L V
Sbjct: 309 YKQDLRN--------------FSKSSAYQVMIMSY---ERLLNCEEE---MLDIKFDLLV 348
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ-EFGEVLRTV 296
DEGH +N+ K L+ + ++++LSGTP QNN E ++ + FG
Sbjct: 349 CDEGHKLKNNTNKSLKILTNMDVSKKVLLSGTPIQNNLTEFYTLINFINPGAFGTFTSFQ 408
Query: 297 RKSGREISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPG 352
+K + I ++ + + +G+ A+ KEL FV +L + L
Sbjct: 409 KKFIKPIEMSREVNCYNKEVIKMGKTAS-------KELSSITKTFVLRRTNDILFKYLSS 461
Query: 353 LRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSL--------LSVHPSLL-PQQFFES 403
++ ++P Q L + SF + + L + PSLL F S
Sbjct: 462 KTDVLLFVKPSHQQLELFDLIMSNCSFADYDNNNVLNLINVFKKICNSPSLLQDDNLFNS 521
Query: 404 FDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQLRHRFN 461
+ + +L +G +++L+E+ EK+++ S Y + L L +E++ + N
Sbjct: 522 L----SGGYKTELSTSSGKIDLLIMMLIEIINEKKEKLVIVSNYTKTLDL-LEKVLKKLN 576
Query: 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPS-SQARIMLASTKACCEGINLVGASRVVLLD 520
+ E L +DG + R S IN N+ S + I L S+K+ GINL+GASR++L D
Sbjct: 577 F----EFLRLDGSTNPSTRTSIINQFNNVSFPRYPIFLLSSKSGGFGINLIGASRLILFD 632
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGG 580
WNP + QA+SR YR GQ + V +Y T+ L+ +RQ K S+ S
Sbjct: 633 NDWNPSNDLQAMSRIYRDGQLKPVFIYRFFTTGCLDEKIFQRQLMKNNLSDKFLNDSKAN 692
Query: 581 GN 582
N
Sbjct: 693 SN 694
>gi|354548230|emb|CCE44967.1| hypothetical protein CPAR2_407700 [Candida parapsilosis]
Length = 826
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 136/522 (26%), Positives = 241/522 (46%), Gaps = 77/522 (14%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM 128
K+ PHQ EG F+++ + G D G+GC+++ G GKT +T+ + +
Sbjct: 214 KLRPHQLEGVTFLYECLMGFRDF----------KGHGCLLADEMGLGKTLMTITTIWTLL 263
Query: 129 KLHP---RCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
K +P + +P++ + P +++ W EEF KW LNK + L
Sbjct: 264 KQNPYPDQKKPIVNKVLVVCPVTLINNWREEFNKW------LGLNKVNV----------L 307
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG-DELSGILLDLPGLFVFD 239
N K +I + KL ++ +L ++Y EK+++ +ELS I DL V D
Sbjct: 308 TLNNPVSDDKRDIINFGKLNVYQ----VLIINY---EKVIAHYEELSTISFDL---LVCD 357
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS 299
EGH +N + L+++ ++I+L+GTP QN E +S + ++T +K
Sbjct: 358 EGHRLKNSANKVMINLTKLNIPKKIVLTGTPIQNYLVEFYTLVSFLNPHVLPDMKTFQKE 417
Query: 300 G-REISKAKHASLISSIGRCANHRDDEKLKELKEKIAP----FVNVHKGTVLQESLPGLR 354
IS+A+ + C N ++ +E+ +++ F+ +L+ L
Sbjct: 418 FINPISRARDVN-------CFNQEIKKQGEEMSQRLISLTHKFILRRTQAILENYLTNKT 470
Query: 355 HSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSV---------HPSLLPQQFFESFD 405
++ + P + Q L +++ + F +L+ LS+ PSLL F
Sbjct: 471 DILLFVPPTQLQLDLFDSIKKSEKFQQLDSGAISLSLINLFRKICNSPSLLASDDFYKNI 530
Query: 406 VDSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWRE 464
D + LKL +G + ++LE++ EK+++ S Y L L +E + + N
Sbjct: 531 TDGS----LKLSTSSGKLNALIPLVLEITAQKEKLVLISNYTTTLDL-LETVIKKLNL-- 583
Query: 465 GQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWN 524
+ L +DG R +N N S + + L S+K+ GINLVGASR++L D WN
Sbjct: 584 --QYLRLDGSTPNNMRGKLVNKFNKDESIS-VFLLSSKSGGTGINLVGASRLILYDNDWN 640
Query: 525 PFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
P + Q++SR +R GQ + ++Y L T+ ++ +RQ K
Sbjct: 641 PSTDLQSMSRIHRDGQMKPCYIYRLFTTGCIDEKIFQRQLMK 682
>gi|367013258|ref|XP_003681129.1| hypothetical protein TDEL_0D03340 [Torulaspora delbrueckii]
gi|359748789|emb|CCE91918.1| hypothetical protein TDEL_0D03340 [Torulaspora delbrueckii]
Length = 912
Score = 145 bits (365), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 146/547 (26%), Positives = 248/547 (45%), Gaps = 78/547 (14%)
Query: 66 VRKKMFPHQREGFEFIWKNIAGGID-------LDELKNS---TSTGGGNGCIISHAPGTG 115
V K + PHQREG +F++ ++G +D+ S +GC+++ G G
Sbjct: 251 VGKNLRPHQREGVKFMYDCVSGLAKPTGKPPTIDQTTTSLILERDSDISGCLLADEMGLG 310
Query: 116 KTGLTLVFLQAYMKLHPRCRPV-----------------IIAPRSMLLTWEEEFKKWGID 158
KT +T+ + +K P V I+ P +++ W+ EF KW
Sbjct: 311 KTLMTIALIWTLLKQTPMASQVPCSQSGVPLQGLCSKVLIVCPVTLIANWKREFGKW--- 367
Query: 159 IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEK 218
NL++ G + L + + K + ++K+ + +L + Y EK
Sbjct: 368 ---LNLSRI--------GVLTLSPSNTAEKDKYDVRNFLKV---QRTYQVLIIGY---EK 410
Query: 219 L--VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQ 276
L VS + SG D L V DEGH +N + + L + ++++LSGTP QN+
Sbjct: 411 LLTVSNELKSG--KDALDLLVCDEGHRLKNGASKILNILKSLDIGKKVLLSGTPIQNDLN 468
Query: 277 ELENTLSLVRQE-FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIA 335
E + + G ++ I +A+ + + A + +E+ KE+ E
Sbjct: 469 EFYTVVDFINPGILGSFSHFKKRFMNPILRARDPA--NRYNELAVEKGEERSKEMIEITQ 526
Query: 336 PFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV-EGVK---SFVELNYCVSLLSV 391
F ++L E LP ++ +P E Q K + +G + + N +SL+++
Sbjct: 527 RFTLRRTNSILAEFLPPRTDMILFCKPTEAQVSAFKDILQGAQIDLKGLNANSSLSLITL 586
Query: 392 ------HPSLLPQQFFESFDVDSAKL-ARLKLDPEAGIKTRFLLILLELSTN----EKVL 440
PSL+ F ++++K+ A+ + +G K + L+ LLE N EKV+
Sbjct: 587 LKKVCNSPSLISSDSFYHSTLENSKISAKYQRALNSG-KLKVLMALLERIRNGTDGEKVV 645
Query: 441 VFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLA 499
V S Y + L +I +R + +DG K+R S + N DP+ A L
Sbjct: 646 VVSNYTQTLDIIENLMRS-----ADMKTCRLDGSTQSKRRDSIVTSFNRDPTMFA--FLL 698
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
S K+ G+NL+GASR++L D WNP V+ QA+SR +R GQKR ++Y LIT+ ++
Sbjct: 699 SAKSGGVGLNLIGASRLILFDNDWNPSVDLQAMSRIHRDGQKRPCYIYRLITAGCIDEKI 758
Query: 560 LRRQARK 566
L+RQ K
Sbjct: 759 LQRQLAK 765
>gi|448524405|ref|XP_003868979.1| Rdh54 DNA-dependent ATPase [Candida orthopsilosis Co 90-125]
gi|380353319|emb|CCG26075.1| Rdh54 DNA-dependent ATPase [Candida orthopsilosis]
Length = 825
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 135/517 (26%), Positives = 236/517 (45%), Gaps = 67/517 (12%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM 128
K+ PHQ EG F+++ + G + GNGC+++ G GKT +T+ + +
Sbjct: 214 KLRPHQLEGVSFLYECLMGFRNF----------KGNGCLLADEMGLGKTLMTITTIWTLL 263
Query: 129 KLHP---RCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
K +P + +PV+ + P +++ W EEFKKW LNK + L
Sbjct: 264 KQNPYPDQKKPVVNKVLVVCPVTLINNWREEFKKW------LGLNKVNV----------L 307
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
N K +I + KL ++ +L ++Y + L +ELS I DL V DE
Sbjct: 308 TLNNSMSDDKRDIINFGKLNVYQ----VLIINYE--KVLAHYEELSTIPFDL---LVCDE 358
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
GH +N + L+++ ++I+L+GTP QN E +S + +T +K
Sbjct: 359 GHRLKNSANKVMINLTKLNISKKIVLTGTPIQNYLVEFYTLVSFLNPRVLPDAKTFQKEF 418
Query: 301 -REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI 359
I++A+ + + + ++L L K F+ +L+ L ++
Sbjct: 419 INPITRARDVNCFNQEIKKQGEEVSQRLISLTHK---FILRRTQAILENYLTNKTDILLF 475
Query: 360 LQPDEFQKRLCKAVEGVKSFVELNYCVSLLSV---------HPSLLPQQFFESFDVDSAK 410
+ P + Q L ++ + F +L+ LS+ PSLL F D +
Sbjct: 476 VPPTQLQLDLFDLIKKSEKFQQLDSGTISLSLINLFRKICNSPSLLASDDFYKSITDGS- 534
Query: 411 LARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVL 469
LKL +G + ++LE++ EK+++ S Y L L +E++ + N + L
Sbjct: 535 ---LKLSTSSGKLNALIPLVLEITAQKEKLVLISNYTTTLDL-LEKVIKKLNL----QYL 586
Query: 470 YMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVER 529
+DG R +N N S + + L S+K+ GINLVGASR++L D WNP +
Sbjct: 587 RLDGTTPNNIRGKLVNRFNRDESIS-VFLLSSKSGGTGINLVGASRLILYDNDWNPSTDL 645
Query: 530 QAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
Q++SR +R GQ++ ++Y + T+ ++ +RQ K
Sbjct: 646 QSMSRIHRDGQRKPCYIYRIFTTGCIDEKIFQRQLMK 682
>gi|164425263|ref|XP_963002.2| hypothetical protein NCU06190 [Neurospora crassa OR74A]
gi|157070856|gb|EAA33766.2| predicted protein [Neurospora crassa OR74A]
Length = 1893
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 139/533 (26%), Positives = 223/533 (41%), Gaps = 106/533 (19%)
Query: 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFL----QAYM 128
HQ +G F+W I + GC+++H G GKT + L +A
Sbjct: 982 HQIDGVRFMWDQIV-----------VESNSRQGCLLAHTMGLGKTMQVITLLVAIAEASQ 1030
Query: 129 KLHPRC-----------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGA 177
PR RP+I+ P ++ W +E KW + K+ G
Sbjct: 1031 SDDPRVVAQIPKDLRVGRPLILCPSGLVENWIDEICKW--------------APKDILGT 1076
Query: 178 VALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE--LSGILLDLPGL 235
+ +D + R + + W G+L + Y LF LVSG+E ++ +L P +
Sbjct: 1077 ITKIDASTVPPSE----RVLLIKEWARSRGVLVMGYELFRSLVSGNEDNVAELLHSSPSI 1132
Query: 236 FVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLR 294
+ DE H +N + ++ + T RI +G+P N + + ++ V + +V
Sbjct: 1133 VICDEAHRFKNKTSKLYAVVQDFHTMSRIATTGSPLTRNVMDYYSMINWVAPNYLSDVGE 1192
Query: 295 TVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLR 354
+K IS HA + R A E+L+ LK +AP VN VL + LP R
Sbjct: 1193 FNQKYAEPISLGLHADSTDAQKRLAR----ERLQILKAIVAPKVNRKDIQVLVDELPQKR 1248
Query: 355 HSVVILQ-----PDEFQKRLCKAVEGVKSFVELNYCV-------SLLSVHPSLLPQQFFE 402
++ +Q D +Q+ L A + + CV LL HP + + E
Sbjct: 1249 EFILTIQMTKVQRDAYQEYLETAQRNKGNDLYRTACVWGLIASLKLLLAHPKIFRSKMEE 1308
Query: 403 SFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRH---- 458
RL +P A +K + + TN++ + EPL L + LR+
Sbjct: 1309 ----------RLSTNP-ALVKGKQRI------TNDEDPESDEVDEPLDLSRDTLRNVLAK 1351
Query: 459 ---------------RFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKA 503
+ N+R+ +DGK V +RQ+++ N S + L ST+A
Sbjct: 1352 VSIRGIDDIDLFKLKKINYRK------LDGKTPVSQRQAAVKEFNAVDS-LDVYLISTRA 1404
Query: 504 CCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
G+N+ GA+RVVL D + P E+QA+ RAYR+GQ++ V VYHL T E
Sbjct: 1405 GGVGLNIPGANRVVLFDFGFTPAEEQQAVGRAYRIGQEKKVFVYHLKVGGTYE 1457
>gi|296413962|ref|XP_002836675.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630508|emb|CAZ80866.1| unnamed protein product [Tuber melanosporum]
Length = 870
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 153/556 (27%), Positives = 244/556 (43%), Gaps = 103/556 (18%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G D G G I++ G GKT L + + +M +
Sbjct: 259 PHQREGVMFLYEAVMGLKPFD----------GRGAILADEMGLGKT-LQTMLVPLWMLID 307
Query: 132 PRCRPV-----------IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
P+ I+ P +++ W +EF+KW GKE G V +
Sbjct: 308 VEQNPIYGGGPVVKRALIVCPVTLINNWNKEFRKW--------------LGKERIG-VLV 352
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
D++ R + K YS ++ + Y +K+ ELS +D+ + DE
Sbjct: 353 ADSKTNIRD----FTHGKSYS------VMVIGYEKLQKVQQ--ELSAADVDI---VIADE 397
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
GH + + +A+ +KT+RR++LSGTP QN+ E + V E T +K
Sbjct: 398 GHRLKTEKNKSAQAIRGLKTKRRVVLSGTPLQNDLHEYFIMVDFVNPGLLESYSTFKKEF 457
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI- 359
++ S A+ +D EK K E++A + VL+ LR +
Sbjct: 458 EN-------PIVRSRQPGASKKDVEKGKARNEELASLTKLF---VLRHPQGNLRSTRAFW 507
Query: 360 -LQPDEFQKRLCKA--VEGVKSFVELNYCVS--LLSVHPSLLPQQFFESFDVDSAKLARL 414
L P +LC + + K E N V L V+P LL + D S K L
Sbjct: 508 GLPP----LKLCNSPGLLADKPGKETNENVKGLLAGVNPKLLESKS----DSHSGKFRVL 559
Query: 415 KLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGK 474
+ LL+ L +T+EK+++ S Y L L+ LR R G L +DG
Sbjct: 560 ER----------LLLALRNTTDEKIVLVSNYTSTLDLLQNLLRSR-----GLSYLRLDGT 604
Query: 475 QDVKKRQSSINVLNDP-SSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAIS 533
KRQ ++ N S+ A L S K+ G+NL+GASR+ L D+ WNP + QA++
Sbjct: 605 TPTNKRQELVDQFNRTNSTTAFAFLLSAKSGGAGLNLIGASRLALFDLDWNPATDAQAMA 664
Query: 534 RAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLED 593
R +R GQ+R V +Y ++T+ + +RQ K+ ++ V + + TAS
Sbjct: 665 RIHRDGQRREVKIYRMLTTGCFDEKIYQRQLTKIGLADSVM-------DQKATAS----S 713
Query: 594 KILEEMAQLYNNPSET 609
LEE+ L++ +ET
Sbjct: 714 FTLEELRDLFSLDTET 729
>gi|145350886|ref|XP_001419826.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580058|gb|ABO98119.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 821
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 153/554 (27%), Positives = 240/554 (43%), Gaps = 78/554 (14%)
Query: 30 SFLD-DLNSRDSGFDSQTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGG 88
S LD D + RD CDPF + + + PHQR+G +F+++ + G
Sbjct: 214 STLDTDFHRRDYRTACAVVCDPF--------------ISRFLRPHQRDGVQFMYEAVMG- 258
Query: 89 IDLDELKNSTSTGGGN-GCIISHAPGTGKTGLTLVFLQAYMKL------HPRCRPVIIA- 140
L+ S T + GC+++H G GKT + + +K P CR V++
Sbjct: 259 -----LRTSVHTNRAHTGCLLAHEMGLGKTLQVIALVWTLLKQSPFKRGQPTCRRVVVCV 313
Query: 141 PRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLY 200
P S+ W EF+KW L + K G D R + + + Y
Sbjct: 314 PASLTGNWALEFRKW--------LGEERCDPKVVEGG----DKEARKSFEEFALPSQRRY 361
Query: 201 SWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRN--DDTCMFKALSRI 258
+ +L SY D ++ +DL V DE H +N T +AL+ +
Sbjct: 362 N------VLITSYETLR--AQADVVARANVDL---LVCDEAHRLKNATQSTKGAQALASL 410
Query: 259 KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK--SGREISKAKHASLISSIG 316
K RR++L+GTP QNN EL + L + RK SG I KA +
Sbjct: 411 KCHRRVLLTGTPIQNNLDELWGVMDFAAPGLLGDLDSFRKIYSG-PIEKASERGAKEEVV 469
Query: 317 RCANHRDDEKLKELKEKIAPFVNVHKGTVLQESL-PGLRHSVVILQPDEFQKRLCKAVEG 375
R N R +E + I PF++ K + SL P VV ++ E QK L
Sbjct: 470 RIGNARREE----VGRLIGPFIHSRKADEINASLLPPKTEYVVFVRLSEVQKGLYVDQLK 525
Query: 376 VKSFVELNYCVSLLSVHPSLLPQQFFESFD--VDSAKLARLKLDPEAGIKTRFLL--ILL 431
KS + + + S+ P Q ++ ++A LA DP A +L +
Sbjct: 526 QKSMLSMLGRIGKTQDAESISPLQAIQTLQKLCNAAALATEVSDPVASSSKLAVLRAMFR 585
Query: 432 ELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLND 489
L+ +E+++V S + L LI + E + + Y + G K+R S + N+
Sbjct: 586 ALANDERIVVVSGFTTTLDLIAKLC-------ESEHLKYDRLQGSTPPKERTSIVRTFNN 638
Query: 490 PSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHL 549
+I+L STKA G+NLVGA+R+VL+D WNP + QA +R +R GQ + +Y L
Sbjct: 639 ---SGKILLLSTKAGGVGLNLVGANRLVLVDSSWNPAHDLQAQARVWREGQTKPCSIYRL 695
Query: 550 ITSETLEWDKLRRQ 563
+++ T+E +RQ
Sbjct: 696 LSTGTIEERMFQRQ 709
>gi|321476094|gb|EFX87055.1| RAD54B meiotic recombination protein [Daphnia pulex]
Length = 1001
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 141/547 (25%), Positives = 238/547 (43%), Gaps = 93/547 (17%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG F+++ + G T G I++ G GKT + +
Sbjct: 429 KNLRPHQREGVVFMYECLMG----------FKTPNMYGAILADEMGLGKTLQCITLIWIL 478
Query: 128 MKLHP-RCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
++ P RP+I + P S++ WE+EF++W L + ++ V
Sbjct: 479 LQQGPYNGRPIIQRVLIVTPSSLVKNWEKEFRRW--------LGRERIT-------VFTA 523
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
D + R I ++K + + ++ +SY + + DE+ I D+ V DEG
Sbjct: 524 DQQNRP------IEFLK----HLVSPVMVVSYEMLVRCF--DEIQQINFDM---VVCDEG 568
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301
H +N LS++ T R+++L+GTP QN+ +E + V L + R++
Sbjct: 569 HRLKNAGNKTSSLLSQLDTNRKVLLTGTPVQNDLKEFFSLADFVNPGILGSLSSFRRTYE 628
Query: 302 EISKAKHASLISSIGRCANHRDDEKLKELKEKIAP--------FVNVHKGTVLQESLPGL 353
E I DE +EL E A FV V+ LP
Sbjct: 629 E-----------PIVALQQPECDEDQRELGESCASELSHLTSQFVLRRTQEVMNAHLPPK 677
Query: 354 RHSVVILQPDEFQKRLCKAV---EGVKSFV--------ELNYCVSL--LSVHPSLLP--- 397
SV+ +P Q L + V V+S + +L++ ++L L HP+L
Sbjct: 678 VESVIFCKPTCVQVNLYRNVLDSSAVRSILSSTQTGNDQLSFILALRKLCNHPTLFAATR 737
Query: 398 ------QQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTL 451
+ + E++ DS+++ + + L L++ +T EK+++ S + L L
Sbjct: 738 KHAECSELWQENYKEDSSQIQSRDASGKFVVTFAILDSLMK-NTKEKIILVSYSTKMLDL 796
Query: 452 IMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLV 511
E R + +DG R ++ NDP R+ L S+KA G+NL+
Sbjct: 797 FGESCTER-----KYSFVRLDGSTPTNTRMGIVDRFNDPQGADRVFLLSSKAGGVGLNLI 851
Query: 512 GASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSN 571
GASR++L D+ WNP + QA++R +R GQKR V +Y L+T+ T+E +RQ K S
Sbjct: 852 GASRLILYDIDWNPANDMQAMARIWREGQKRTVQIYRLLTTGTIEEKIFQRQILKQGLSG 911
Query: 572 MVFPSSD 578
+ + D
Sbjct: 912 AIVDARD 918
>gi|195428619|ref|XP_002062369.1| GK17504 [Drosophila willistoni]
gi|194158454|gb|EDW73355.1| GK17504 [Drosophila willistoni]
Length = 2023
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 142/546 (26%), Positives = 236/546 (43%), Gaps = 83/546 (15%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-Y 127
++ P+Q EG ++ + GID I++ G GKT T+ FL + Y
Sbjct: 740 QLHPYQIEGINWLRYSWGQGID---------------TILADEMGLGKTIQTVTFLYSLY 784
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG 187
+ H R ++ P S L+ WE EF+ W D FY + G +++ AV +
Sbjct: 785 KEGHCRGPFLVAVPLSTLVNWEREFELWAPD--FYCIT---YIGDKDSRAVIRENELSFE 839
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGL-------FVFDE 240
G + + +L + + +L SY L I +D P L V DE
Sbjct: 840 EGAIRGTKVSRLRTTQYKFNVLLTSYEL------------ISMDAPCLGSIDWAVLVVDE 887
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +++ + F+ L+ +++L+GTP QNN +EL + L+
Sbjct: 888 AHRLKSNQSKFFRILNSYTIAYKLLLTGTPLQNNLEELFHLLNF---------------- 931
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+S+ K L + G A+ +E++K L E + P + T + +++P +V +
Sbjct: 932 --LSRDKFNDLQAFQGEFADVSKEEQVKRLHEMLGPHMLRRLKTDVLKNMPSKSEFIVRV 989
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + K++ LN SL+++ HP L P E+
Sbjct: 990 ELSAMQKKFYKFI-LTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSAAEEALTS 1048
Query: 407 DSAKLARLKLDPEAGIKTRFLLILLEL-STNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
L AG +L +L S N +VL+FSQ + L ++ + L EG
Sbjct: 1049 AGGLYEINSLTKAAGKLVLLSKMLKQLKSQNHRVLIFSQMTKMLDILEDFL-------EG 1101
Query: 466 QEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVW 523
++ Y +DG RQ +I+ N P +Q + L ST+A GINL A V++ D W
Sbjct: 1102 EQYKYERIDGSITGAVRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDW 1161
Query: 524 NPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGND 583
NP + QA SRA+R+GQ V +Y +T ++E + RK+ +++V GG
Sbjct: 1162 NPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGA 1221
Query: 584 QTTASE 589
T E
Sbjct: 1222 NFTKQE 1227
>gi|384485625|gb|EIE77805.1| hypothetical protein RO3G_02509 [Rhizopus delemar RA 99-880]
Length = 752
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 139/548 (25%), Positives = 231/548 (42%), Gaps = 98/548 (17%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT----GLTLVFLQAY 127
PHQ EG +F+++ G + D GCI++ G GKT L LQ
Sbjct: 210 PHQVEGVKFLYQCTTGKVHPD----------AAGCIMADEMGLGKTLQCIALVWTLLQQS 259
Query: 128 MKL-HPRC-RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRK 185
+ P + ++ P S++ W EF KW + L KE AV ++
Sbjct: 260 EAIGKPTINKAIVTCPSSLVKNWANEFVKWLGENRVRPLVVDSGGTKEKVAAV-----KR 314
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPR 245
G + ++ + + S++ S R + K + + G+ + DEGH +
Sbjct: 315 WGAAQGQIVNPILIISYE--------SLRTYSKYLRKSPI--------GMLLCDEGHRLK 358
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV------------RQEFGEVL 293
N ++ +F+ L+ + +R+ILSGTP QN+ E + L R +L
Sbjct: 359 NSESLLFQELNSLPVTKRVILSGTPIQNDLSEYYSLLDFANPGLLGTPSEFRRNYENPIL 418
Query: 294 R----TVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQES 349
R + R++S K A + R R ++ L + V K LQE+
Sbjct: 419 RGRDADASEKERQVSDEKVAEFWKIVSRFTIRRTNDILSKYLPTKYEHVVFCKLAPLQEA 478
Query: 350 LPGLRHSVVILQPD----------------EFQKRLCKAVEGVKSFVELNYCVSLL--SV 391
L ++V + P+ K+LC + +L C S+L +
Sbjct: 479 L----YNVFLTSPEIKTLLRGQGSQPLKAITLLKKLCNHPSLLNLPNDLEGCESVLPPNY 534
Query: 392 HPS-LLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLT 450
H S + Q F F V + LA++K + T +K+++ S Y + L
Sbjct: 535 HNSNKIEQSFSGKFAVMARMLAKIKKE-----------------TKDKIVLISNYTQTLD 577
Query: 451 LIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINL 510
L + + VL +DG + KRQ ++ NDP + L S+KA G+NL
Sbjct: 578 LF-----EAYCQEQQYGVLRLDGSMTIPKRQKLVDRFNDPEGGEFVFLLSSKAGGCGLNL 632
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS 570
+GA+R+VL D WNP ++QA++R +R GQK+ ++Y I + T+E +RQ+ K S
Sbjct: 633 IGANRLVLFDPDWNPAADQQALARVWRDGQKKDCYIYRFIAAGTIEEKIFQRQSHKQSLS 692
Query: 571 NMVFPSSD 578
N V +D
Sbjct: 693 NCVVDEAD 700
>gi|302309194|ref|NP_986455.2| AGL212Wp [Ashbya gossypii ATCC 10895]
gi|299788244|gb|AAS54279.2| AGL212Wp [Ashbya gossypii ATCC 10895]
gi|374109700|gb|AEY98605.1| FAGL212Wp [Ashbya gossypii FDAG1]
Length = 903
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 147/583 (25%), Positives = 252/583 (43%), Gaps = 82/583 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTST-----GGGNGCIISHAPGTGKTGLTLV 122
KK+ HQR G +F++ + G ++ + T GC+++ G GKT +T+
Sbjct: 251 KKLRQHQRTGIKFMYDCVRGLARSEKDDDRTVMILEYDSDVKGCLLADEMGLGKTCMTIA 310
Query: 123 FLQAYMKLHPR----------------CRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLN 165
+ +K HPR C+ V ++ P +++ W++EF KW +P +
Sbjct: 311 LIWTLLKQHPRPSSVPCSQLGVALQGICQKVLVVCPVTLIGNWKKEFIKW---LPMNRIG 367
Query: 166 KPELSGKENNGAVALMDNRKRGRGKV-GLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
LS K + ++ + V +R + Y +L L Y + S +
Sbjct: 368 ILTLSSK---------NTPEKDKNDVRNFLRVQRTYQ------VLILGYEKLLNVFSELD 412
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
+ LDL + DEGH +N + + K L+ ++ R++IL+GTP QN+ E ++
Sbjct: 413 QAKSKLDL---LICDEGHRLKNSSSKILKCLTDLEIERKVILTGTPIQNDLNEFYTIINF 469
Query: 285 VR-------QEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPF 337
+ F V T R+++ KH I S+G + + ++L E F
Sbjct: 470 INPGILGTFAHFKRVYITPITRARDVNN-KHNDQIVSLG-------ESRSQDLIEITKKF 521
Query: 338 VNVHKGTVLQESLPGLRHSVVILQPDEFQ-KRLCKAVEGVK-SFVELNYCVSL------- 388
+ +++ + LP VV +P + Q + + G + F +++ SL
Sbjct: 522 ILRRTSSIIADYLPPRTDIVVFCKPTQHQLDAFNQVLVGTRVDFQNMSFNSSLGLITLFK 581
Query: 389 -LSVHPSLLPQ-QFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----STNEKVLVF 442
+ PSL+ +F+S R+ +G K + L+ LL S NEKV+V
Sbjct: 582 KICNSPSLVSSDSYFQSKVNGGTPALRIAQSTTSG-KLKVLMSLLHQIAHRSDNEKVVVI 640
Query: 443 SQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTK 502
S Y + L +I + L +DG K+R + +N N + +L S K
Sbjct: 641 SNYTQTLDIIGNLMSS-----ASLSYLRLDGSTPTKERDAIVNDFNRSQTIFGFLL-SAK 694
Query: 503 ACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRR 562
+ G+NLVGASR++L D WNP V+ QA+SR +R GQK+ +Y L+T+ ++ +R
Sbjct: 695 SGGVGLNLVGASRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKIFQR 754
Query: 563 QARKVWWSNMVFPS-SDGGGNDQTTASEPLEDKILEEMAQLYN 604
Q K S D +D E L+D + L N
Sbjct: 755 QLMKNNLSKKFLDDHCDDKSSDNVFEQEDLKDLFSVQSGTLSN 797
>gi|341886127|gb|EGT42062.1| hypothetical protein CAEBREN_11522 [Caenorhabditis brenneri]
Length = 922
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 155/554 (27%), Positives = 242/554 (43%), Gaps = 100/554 (18%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K++ HQ+EG FI++ + + +GG I++ G GK+ T+ A
Sbjct: 241 KQLRDHQKEGIRFIFERL-----------KSDSGGA---ILADDMGLGKSIQTMAATWAL 286
Query: 128 MKLHPRCRP------VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
++ P +II P S++ W+ EF+KW + F P + + +
Sbjct: 287 LRGSKAPSPQIANSCLIIVPSSLVNNWKAEFEKWWRLMRF-----PAVMAQTAKDISSYQ 341
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
K+ L +SY + ++ V ++L I D+ V DEG
Sbjct: 342 STVKQ-------------------MPYLVISYDMAQRHV--EKLRMIHFDI---IVCDEG 377
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR-QEFGEVLRTVRKSG 300
H +N D + + L ++ RR+IL+GTP QN+F E + L VR EFG +
Sbjct: 378 HKLKNLDGKLRRTLLSLEIPRRLILTGTPMQNDFDEFYSLLDFVRPNEFGTLAEF----- 432
Query: 301 REISKAKHASLISSIGRCANHRD--DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
R++ L I C R D L L EK ++ + +Q+++ HS
Sbjct: 433 RKMCNDNPEQLNELIDDCMLRRTAADVNLTHLPEK-HEYILFCAASQIQQNI----HS-- 485
Query: 359 ILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLAR----- 413
+C + G + L + L+ HP LL E D +K +
Sbjct: 486 ---------EICDYMTG--DALSLIFFARQLANHPKLLLDNLREKNDKPGSKSLKQIQKH 534
Query: 414 ----LKLD----PEAGIKTRFLLI-LLEL-----STNEKVLVFSQYIEPLTLIMEQLRHR 459
L D P G+K LI L+E+ E ++ S YIE L +I EQL
Sbjct: 535 SALLLAFDGLNMPRGGVKESGKLIALVEMLKCFRGLQECAVIVSNYIETLDMI-EQLCEY 593
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
+++ V +DGK V+ RQ + ND + I L STKA G+NL+GASR+VL
Sbjct: 594 LDFK----VFRLDGKTQVQDRQKLVKHFNDQRDPSNIFLLSTKAGGVGLNLIGASRLVLF 649
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDG 579
D WNP ++QA++R +R GQ R H+Y LIT+ T+E L+RQ +K V + +
Sbjct: 650 DSDWNPANDQQAMARIWRDGQVRPCHIYRLITTGTIEEKMLQRQIKKTGL-GCVIDAIEV 708
Query: 580 GGNDQTTASEPLED 593
G + T E L+D
Sbjct: 709 GESVSTFTDEELKD 722
>gi|19112177|ref|NP_595385.1| SHREC complex subunit Mit1 [Schizosaccharomyces pombe 972h-]
gi|74625356|sp|Q9P793.1|MIT1_SCHPO RecName: Full=Chromatin remodeling factor mit1; AltName:
Full=Mi2-like interacting with clr3 protein 1; AltName:
Full=Snf2/Hdac-containing repressor complex protein mit1;
Short=SHREC protein mit1
gi|7573203|emb|CAB87372.1| SHREC complex subunit Mit1 [Schizosaccharomyces pombe]
Length = 1418
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 137/510 (26%), Positives = 232/510 (45%), Gaps = 87/510 (17%)
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNL 164
CI++ G GKT + F+ H +C PV +I P + + WE E KKW PF +
Sbjct: 577 CILADEMGLGKTVQVISFISVLFYRH-KCFPVLVIVPHATVANWERELKKWA---PFLQI 632
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWK----MGTGILGLSYRLFEKLV 220
N L G E N + L+R +L + K + T +L +S E+
Sbjct: 633 NV--LVGSEKNRS---------------LVRDYRLINQKDPKHVSTHVLVISASNVER-- 673
Query: 221 SGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELEN 280
E+S + + + DEG +ND + +F LS +K+ +++L+GTP QNN +EL N
Sbjct: 674 ---EISLLRKFQWKVLIVDEGQRLKNDQSSLFYYLSSVKSDFKLLLTGTPLQNNVRELFN 730
Query: 281 TLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNV 340
L + L ++ + E+ K S+I D EK+ EL + + PF
Sbjct: 731 LL--------QFLNPMKINAAELEK--RYSII----------DTEKVTELHQILKPFFLR 770
Query: 341 HKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV-------------------EGVKSFVE 381
+ + ++ P ++ L QK L K++ G +
Sbjct: 771 RVKSEVLDNFPTKVEVIIPLSMTPVQKGLYKSILSKNLSLLRNITGYANTSSSGGQRTTS 830
Query: 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLA---RLKLDPEAGIKTRFLLILLE--LSTN 436
LN ++L L + S D++ L ++ EA K L +L+ ++
Sbjct: 831 LN---NILMQLRKTLAHPYIYSPDIEDRNLPYELAMRSLEEASCKFLILRLLVPKLITRG 887
Query: 437 EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQA 494
++L+FSQ+I+ L ++ + W E + + Y DG +RQS+I+ N P+S+
Sbjct: 888 HRILLFSQFIQQLDILED-------WFEYKNIAYARFDGASSEMERQSAIDSFNAPNSEL 940
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A V++LD +NP + QAI+RA+R GQK+ V V+ L T ++
Sbjct: 941 SCFLLSTRAGGVGINLASADTVIILDPDFNPHQDMQAIARAHRYGQKKKVLVFVLTTRDS 1000
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGGNDQ 584
+E ++ +K+ +++ S D N +
Sbjct: 1001 VEEKIIQNAQKKLVLDHLIVESLDQNHNSE 1030
>gi|84998504|ref|XP_953973.1| recombinational repair (RAD54 ) protein [Theileria annulata]
gi|65304971|emb|CAI73296.1| recombinational repair (RAD54 homologue) protein [Theileria
annulata]
Length = 806
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 149/552 (26%), Positives = 237/552 (42%), Gaps = 104/552 (18%)
Query: 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP 132
HQR+G +FI+ + G LK G GCI++ G GKT ++ + +
Sbjct: 140 HQRQGVQFIFDCLMG------LKGF----NGRGCILADDMGLGKTLQSITVMWTLLNQGL 189
Query: 133 RCRP---------------VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGA 177
+P II P S++ WE E KKW L GK A
Sbjct: 190 DNKPGKTHNYTSSTAARKCAIICPASLVNNWESEIKKW-------------LRGKCPCTA 236
Query: 178 VALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFV 237
VA K +I + + + + ++ SY + S L G+ +DL +
Sbjct: 237 VAESSKEK-------VISSFQGFKYDRTSKVIISSYETYRLHCS--YLEGVNIDL---LI 284
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGEVLRTV 296
DE H +ND T +++S + R++LSGTP QN+ E + +SL + G+V
Sbjct: 285 CDEAHRLKNDKTRTSQSISTSSAQMRLMLSGTPIQNDLNEFYSLVSLCNPDVLGDVNNFR 344
Query: 297 RKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHS 356
R I + + + E+L EL FV +L + LP
Sbjct: 345 RNFANPILIGREPYATPA----EQQKASERLAELSNITNQFVLRRTNALLAKVLPPKIIL 400
Query: 357 VVILQPDEFQKRLCKAVEGVKSF--------VE---LNYCVSLLSV--HPSLLPQQ-FFE 402
V + QK + K+ K + VE L+ SL+ + HP L+ +
Sbjct: 401 NVFCNLTDVQKDIYKSFVNSKRWKNIMNQDRVESRALSAIQSLMKLCNHPYLIKRGGLMS 460
Query: 403 SFDVDSAKLARLKLDPEAGIKT------------RFLLIL-----LELSTNEKVLVFSQY 445
S DVDS L LD E K+ +FL++ + ++N++V++ S Y
Sbjct: 461 SPDVDS-----LLLDIENATKSSKYKCCRCDLSGKFLVLFRLLYQIRKNSNDRVVIISNY 515
Query: 446 IEPLTLIMEQLRHRFNWREGQEVLY----MDGKQDVKKRQSSINVLNDPSSQARIMLAST 501
+ L L R +E Y +DG +KKR + NDP+S + + L S+
Sbjct: 516 TQTLDLFE---------RLCKECSYPFERLDGGTSIKKRHKLVTTFNDPNSNSFVFLLSS 566
Query: 502 KACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561
KA GINL+GA+R+VL D WNP ++QA++R +R GQ +V ++Y ++ T+E +
Sbjct: 567 KAGGCGINLIGANRLVLFDPDWNPANDKQALARVWRDGQTKVCYIYRFFSTGTIEEKIYQ 626
Query: 562 RQARKVWWSNMV 573
RQ K S+M+
Sbjct: 627 RQICKDGLSSML 638
>gi|67517153|ref|XP_658459.1| hypothetical protein AN0855.2 [Aspergillus nidulans FGSC A4]
gi|40746529|gb|EAA65685.1| hypothetical protein AN0855.2 [Aspergillus nidulans FGSC A4]
gi|259488860|tpe|CBF88651.1| TPA: DNA-dependent ATPase (Eurofung) [Aspergillus nidulans FGSC A4]
Length = 1011
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 152/552 (27%), Positives = 230/552 (41%), Gaps = 99/552 (17%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+++ + G + G G I++ G GKT T+ L
Sbjct: 293 KHLRPHQREGVKFLYECVMGMRSFN----------GEGAILADDMGLGKTLQTITLLWTL 342
Query: 128 MKLHP--RCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P PVI + P +++ W EF+KW G E G
Sbjct: 343 LKQNPIYEAAPVIKKALIVCPVTLINNWRREFRKW--------------LGNERIGVFVF 388
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTG----ILGLSYRLFEKLVSGDE--LSGILLDLPG 234
D RKR L + MG I+G +EKL S E G +D+
Sbjct: 389 DDKRKR------------LTDFTMGKAYSIMIVG-----YEKLRSVQEGLARGNGVDI-- 429
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294
+ DEGH + +A+ + +RIILSGTP QN+ +E + LV
Sbjct: 430 -VIADEGHRLKTLQNKSGQAIQSLNATKRIILSGTPIQNDLKEFFAAVDLVNP------- 481
Query: 295 TVRKSGREISKAKHASLISSIGRCANHRDDEKLK----ELKEKIAPFVNVHKGTVLQESL 350
V S + K ++ S A +D EK + EL+E + F+ +L + L
Sbjct: 482 GVLGSFKSFIKEFEGPIVRSRQPEATEKDIEKGEARNEELRELTSQFMLRRTADILADYL 541
Query: 351 PGLRHSVVILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSVHPSLLPQQF 400
P V+ +P Q ++ + A+ +S ++L + L PSLL
Sbjct: 542 PPKTEYVLFCKPTNTQAKIYQNVLASPVFQGALGNSESALQLITILKKLCNSPSLL--SL 599
Query: 401 FESFDVDSAKLARL----------KLDPEAGIKTRFL---LILLELSTNEKVLVFSQYIE 447
++ + S +A + P K R L L L ST+EKV++ S Y
Sbjct: 600 KDANEKPSETIAAILSSLPPNLLRHFSPSCSAKIRVLDQLLHYLRTSTSEKVVLVSNYTS 659
Query: 448 PLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCE 506
L L +DG +KRQS + N P+S L S KA
Sbjct: 660 -----TLDLLANLLSSLSLPFLRLDGSTPAQKRQSLVEDFNRHPASTCFAFLLSAKAGGT 714
Query: 507 GINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
G+NL+GASR+VL DV WNP + QA++R +R GQK H+Y ++ +LE +RQ K
Sbjct: 715 GLNLIGASRLVLFDVDWNPATDIQAMARIHRDGQKHHCHIYRILLQGSLEEKIWQRQVTK 774
Query: 567 VWWSNMVFPSSD 578
+ ++ V D
Sbjct: 775 IGLADSVMEHKD 786
>gi|336263376|ref|XP_003346468.1| hypothetical protein SMAC_05363 [Sordaria macrospora k-hell]
gi|380089980|emb|CCC12291.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1811
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 140/541 (25%), Positives = 229/541 (42%), Gaps = 95/541 (17%)
Query: 64 RDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVF 123
+D+ KK+ HQ +G F+W I + GC+++H G GKT +
Sbjct: 968 QDIGKKIKDHQIDGVRFMWDQIV-----------VESNSRQGCLLAHTMGLGKTMQVITL 1016
Query: 124 L----QAYMKLHPRC-----------RPVIIAPRSMLLTWEEEFKKW---GIDIPFYNLN 165
L +A PR R +I+ P ++ W +E W GI + +
Sbjct: 1017 LVAIAEASQSDDPRMVAQIPKDLQNGRALILCPSGLVENWADEVDMWAPGGILGEIFTIV 1076
Query: 166 KPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE- 224
+ E + + R+R + + W G+L + Y +F LVS +E
Sbjct: 1077 R-----DERDTRTQEVKTRER---------ILTVKQWTRSRGLLIIGYEMFRTLVSKNED 1122
Query: 225 -LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS 283
++ +L P + + DE H +N + ++ A+ +T RI +G+P N + + ++
Sbjct: 1123 NVAELLHCSPSIVICDEAHRFKNKTSKLYAAVQNFQTMSRIATTGSPLTKNVMDYYSMIN 1182
Query: 284 LVRQEF-GEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHK 342
V + +V +K IS HA +S + + E+L+ LK +AP VN
Sbjct: 1183 WVAPNYLSDVGEFNQKYAEPISLGLHADCSASEKKLSR----ERLQILKAIVAPKVNRRD 1238
Query: 343 GTVLQESLPGLRHSVVILQ-----PDEFQKRLCKAVEGVKSFVELNYCV-------SLLS 390
VL + LP R ++ +Q D +++ L A + + CV LL
Sbjct: 1239 IQVLVDELPQKREFILTIQMTKVQRDAYKEYLETAERNKGNDLYRTACVWEFIAALKLLL 1298
Query: 391 VHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLT 450
HP + + E + + A R K R + N++ ++ EPL
Sbjct: 1299 AHPKIFKSKVQERLNTNQAPAKR---------KKRII--------NDEDPDNNESDEPLD 1341
Query: 451 LIMEQLRHRFNW-------------REGQEVLY--MDGKQDVKKRQSSINVLNDPSSQAR 495
L + LR R G ++L+ +DG V KRQ++I N +S
Sbjct: 1342 LSRDMLRSVLAKVSIRGIDDIDLFKRPGMKILHKRLDGSTPVGKRQAAIKDFNTDNS-LD 1400
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
+ L STKA G+N+ GA+RVVL D + P E+QA+ RAYR+GQK+ V VYHL T
Sbjct: 1401 VYLISTKAGGVGLNIPGANRVVLFDFGFTPAEEQQAVGRAYRIGQKKDVFVYHLKVGGTY 1460
Query: 556 E 556
E
Sbjct: 1461 E 1461
>gi|395512148|ref|XP_003760306.1| PREDICTED: DNA repair and recombination protein RAD54B [Sarcophilus
harrisii]
Length = 912
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 143/564 (25%), Positives = 236/564 (41%), Gaps = 99/564 (17%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT--GLTLVFLQAYMK 129
PHQ+EG F+++ + G G G I++ G GKT ++LV+
Sbjct: 300 PHQKEGIVFLYECVMG----------MRMNGRFGAILADEMGLGKTLQCISLVWTLLRQG 349
Query: 130 LHPRCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNR 184
L+ +P+I + P S++ W++EF+KW G E + +
Sbjct: 350 LYGG-KPIIKKTLIVTPGSLVTNWKKEFQKW--------------LGSERIKVFTVDQDH 394
Query: 185 KRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTP 244
K + LYS +L +SY + + + D++ I DL + DEGH
Sbjct: 395 K-----IEDFVNSPLYS------VLVISYEMLLRCL--DQIKNIKFDL---LICDEGHRL 438
Query: 245 RNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREIS 304
+N AL + +R+IL+GTP QN+ QE + V L + RK E
Sbjct: 439 KNSSIKTTTALVGLSCEKRVILTGTPIQNDLQEFYALIEFVNPGILGSLSSYRKIYEE-- 496
Query: 305 KAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+S A + +++ EL F+ V+ + LP +VV
Sbjct: 497 -----PIIASREPSATEEEKKLGEKRAAELTRLTGLFILRRTQEVINKYLPPKIENVVFC 551
Query: 361 QPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSV---HPSLL----------- 396
+P Q L + ++GV C+ L HP LL
Sbjct: 552 RPGRLQIELYRKLLDSQAVRFCLQGVLENSPHLICIGALKKLCNHPCLLFKSLKEKECNS 611
Query: 397 ----------PQQFFESFDVDSAKLARLKLDP-EAGIKTRFLLILLELSTNEKVLVFSQY 445
+ +++ D L + D + + T+ L ++ ELS +EKV++ S Y
Sbjct: 612 SSDEYEEYNFSESLIDAYPADYNPLTFSETDSGKLHVLTKLLAVIHELSPSEKVVLVSNY 671
Query: 446 IEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACC 505
+ L ++ E + R G +DG+ V +RQ ++ N S + L S+KA
Sbjct: 672 TQTLNILQEVCK-----RHGYNCSRLDGQTPVVQRQQIVDGFNSKHSSDFVFLLSSKAGG 726
Query: 506 EGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQAR 565
G+NL+G S ++L D+ WNP + QA++R +R GQK VH+Y L+T+ T+E +RQ
Sbjct: 727 VGLNLIGGSHLILYDIDWNPATDIQAMARVWRDGQKHSVHIYRLLTTGTIEEKIYQRQIS 786
Query: 566 KVWWSNMVFPSSDGGGNDQTTASE 589
K S V S + Q + E
Sbjct: 787 KQGLSGAVVDLSKTSEHIQFSVEE 810
>gi|88319960|ref|NP_001034645.1| DNA repair and recombination protein RAD54B isoform 1 [Mus
musculus]
gi|51316246|sp|Q6PFE3.1|RA54B_MOUSE RecName: Full=DNA repair and recombination protein RAD54B; AltName:
Full=RAD54 homolog B
gi|34785459|gb|AAH57604.1| RIKEN cDNA E130016E03 gene [Mus musculus]
Length = 886
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 162/584 (27%), Positives = 244/584 (41%), Gaps = 118/584 (20%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ++G F+++ + G G G I++ G GKT + +
Sbjct: 276 PHQKDGIIFLYECVMG----------MRAVGKCGAILADEMGLGKTLQCISLIWTLQCQG 325
Query: 132 PRC-RPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRK 185
P +PVI + P S++ W +EF+KW G E + + K
Sbjct: 326 PYGGKPVIKKTLIVTPGSLVNNWRKEFQKW--------------LGSERIKIFTVDQDHK 371
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPR 245
V+ + +L +SY + L S D++ I GL + DEGH +
Sbjct: 372 -----------VEEFINSTFHSVLIISYEML--LRSLDQIKTIPF---GLLICDEGHRLK 415
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQE-----------LENTLSLVRQEFGEVLR 294
N ALS + + +IL+GTP QN+ QE + +LS R+ + E +
Sbjct: 416 NSSIKTTTALSSLSCEKTVILTGTPVQNDLQEFFALVDFVNPGILGSLSSYRKIYEEPII 475
Query: 295 TVR-----KSGREISKAKHASLISSIGRCANHRDDEKL-KELKEKIAPFVNVHKGTVLQE 348
R K RE+ + + L GR R E + K L KI V G + E
Sbjct: 476 ISREPSSSKEERELGERRATELTRLTGRFILRRTQEVINKYLPPKIENVVFCRPGALQIE 535
Query: 349 -------------SLPGLRHSVVILQPDEFQKRLCK-------AVEGVKSFV-------E 381
L GL + L K+LC +V+G K F E
Sbjct: 536 LYRKLLRSQSVRFCLQGLLENSAHLICIGALKKLCNHPCLLFSSVKG-KEFSSSCEENEE 594
Query: 382 LNYCVSLLSVHPSLL-PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVL 440
N C LLSV P+ P QF E +S KL L + L ++ EL EKV+
Sbjct: 595 RNLCQGLLSVFPAGYNPLQFSEE---ESGKLQVL---------VKLLAVIHELRPTEKVI 642
Query: 441 VFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500
+ S Y + L ++ E + R G +DG+ V +RQ ++ N S I L S
Sbjct: 643 LVSNYRQTLNVLEEVCK-----RHGYACARLDGQTPVSQRQHIVDSFNSKYSTDFIFLLS 697
Query: 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKL 560
+KA G+NL+G S ++L D+ WNP + QA+SR +R GQK VH+Y L+T+ T+E
Sbjct: 698 SKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIY 757
Query: 561 RRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYN 604
+RQ K S V D T +SE ++ + EE+ L+
Sbjct: 758 QRQISKQGLSGAVV--------DLTRSSEHIQFSV-EELKNLFT 792
>gi|346327248|gb|EGX96844.1| SNF2 family helicase/ATPase, putative [Cordyceps militaris CM01]
Length = 1674
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 143/564 (25%), Positives = 238/564 (42%), Gaps = 100/564 (17%)
Query: 55 QGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGT 114
QG ++ V R++ ++ HQ EG F+W +I GC+++H G
Sbjct: 760 QGFIY--VHREISLRIKDHQIEGVRFLWNHIV-----------REQSERQGCLLAHTMGL 806
Query: 115 GKTGLTLVFL----QAYMKLHPRCRP-----------VIIAPRSMLLTWEEEFKKWGIDI 159
GKT T+ FL Q+ + P R +++ P ++ W++EF W
Sbjct: 807 GKTMQTITFLVALRQSALSDDPTIRDQIPQDLRDWKVLVLCPSGLVENWKDEFLIWAPQH 866
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEK- 218
N+ E + +DN K W G+L Y +F+
Sbjct: 867 LMKNITTIEAY----QSSPQRIDNAK---------------YWASEGGVLITGYNMFKSG 907
Query: 219 ----LVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNN 274
L + IL++ + + DE HT +N + + S +KT RI L+G+P NN
Sbjct: 908 FRKGLDDDQTIDRILVENATVVIADEAHTLKNPRAKVTQVASELKTSTRIALTGSPLANN 967
Query: 275 FQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKI 334
+E ++ V F L+ R + H L R + L+ LK
Sbjct: 968 VEEYYAMINWVAPNFLGPLQEFRDM---YAAPIHQGLYHDSTTAEKRRAIKLLQVLKTTA 1024
Query: 335 APFVNVHKGTV---LQESLPGLRHSVVILQPDEFQKRLC-----------KAVEGVKSFV 380
AP VH+ T+ L++ LP V+ + P + Q++L ++ F
Sbjct: 1025 AP--KVHRATIKSCLKDELPPKEEFVISVPPTQMQRQLYDLYMQAAHYSGDKLDQASLFG 1082
Query: 381 ELNYCVSLLSVHPSLLPQQFFE------------SFDVDS-AKLARLKLD-----PEAGI 422
LN+ ++L+ HP+ + + F +++ ++ ++ D E
Sbjct: 1083 VLNH-LALICAHPAAYRRTVIDLRTKAGFGKAVAKFPMETIPQIMKITNDMDLNRTEFSN 1141
Query: 423 KTRFLLILLELST--NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKR 480
K L +L S+ +KVLVFSQ I L + + +H +G+ +DG V KR
Sbjct: 1142 KVELLNKILNQSSRLGDKVLVFSQSIPTLNYLDKLFQH-----QGRRFCRLDGSTLVAKR 1196
Query: 481 QSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQ 540
Q + N S + + L ST A G+N+ GA+RVV+ D WNP ++QAI RAYR+GQ
Sbjct: 1197 QDMVKRFNTGSDE--VYLISTNAGGVGLNIYGANRVVIFDFKWNPVQDQQAIGRAYRIGQ 1254
Query: 541 KRVVHVYHLITSETLEWDKLRRQA 564
+ V VY + + + E D L+ +A
Sbjct: 1255 TKPVFVYRFVVAGSFE-DDLQNKA 1277
>gi|148673695|gb|EDL05642.1| mCG142038, isoform CRA_b [Mus musculus]
Length = 886
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 162/584 (27%), Positives = 244/584 (41%), Gaps = 118/584 (20%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ++G F+++ + G G G I++ G GKT + +
Sbjct: 276 PHQKDGIIFLYECVMG----------MRAVGKCGAILADEMGLGKTLQCISLIWTLQCQG 325
Query: 132 PRC-RPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRK 185
P +PVI + P S++ W +EF+KW G E + + K
Sbjct: 326 PYGGKPVIKKTLIVTPGSLVDNWRKEFQKW--------------LGSERIKIFTVDQDHK 371
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPR 245
V+ + +L +SY + L S D++ I GL + DEGH +
Sbjct: 372 -----------VEEFINSTFHSVLIISYEML--LRSLDQIKTIPF---GLLICDEGHRLK 415
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQE-----------LENTLSLVRQEFGEVLR 294
N ALS + + +IL+GTP QN+ QE + +LS R+ + E +
Sbjct: 416 NSSIKTTTALSSLSCEKTVILTGTPVQNDLQEFFALVDFVNPGILGSLSSYRKIYEEPII 475
Query: 295 TVR-----KSGREISKAKHASLISSIGRCANHRDDEKL-KELKEKIAPFVNVHKGTVLQE 348
R K RE+ + + L GR R E + K L KI V G + E
Sbjct: 476 ISREPSSSKEERELGERRATELTRLTGRFILRRTQEVINKYLPPKIENVVFCRPGALQIE 535
Query: 349 -------------SLPGLRHSVVILQPDEFQKRLCK-------AVEGVKSFV-------E 381
L GL + L K+LC +V+G K F E
Sbjct: 536 LYRKLLRSQSVRFCLQGLLENSAHLICIGALKKLCNHPCLLFSSVKG-KEFSSSCEENEE 594
Query: 382 LNYCVSLLSVHPSLL-PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVL 440
N C LLSV P+ P QF E +S KL L + L ++ EL EKV+
Sbjct: 595 RNLCQGLLSVFPAGYNPLQFSEE---ESGKLQVL---------VKLLAVIHELRPTEKVI 642
Query: 441 VFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500
+ S Y + L ++ E + R G +DG+ V +RQ ++ N S I L S
Sbjct: 643 LVSNYRQTLNVLEEVCK-----RHGYACARLDGQTPVSQRQHIVDSFNSKYSTDFIFLLS 697
Query: 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKL 560
+KA G+NL+G S ++L D+ WNP + QA+SR +R GQK VH+Y L+T+ T+E
Sbjct: 698 SKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIY 757
Query: 561 RRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYN 604
+RQ K S V D T +SE ++ + EE+ L+
Sbjct: 758 QRQISKQGLSGAVV--------DLTRSSEHIQFSV-EELKNLFT 792
>gi|116873076|ref|YP_849857.1| DNA/RNA helicase [Listeria welshimeri serovar 6b str. SLCC5334]
gi|116741954|emb|CAK21078.1| DNA/RNA helicase protein [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 1072
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 144/502 (28%), Positives = 218/502 (43%), Gaps = 90/502 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 608 LPKGLKAELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 652
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV II P S+L W+ E +K+ DIP L+ + S +A
Sbjct: 653 SFLASELEDNPNLKPVLIITPASLLYNWQSELEKFAPDIPVTVLHGTKQS------RIAE 706
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFD 239
M+ K G + LI Y L M L D+P + D
Sbjct: 707 MEEIKHGH--IYLISYPSLRQDIMN-----------------------LADIPFSSVIID 741
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS 299
E +N T +A+ +K LSGTP +N+ EL + F LR +
Sbjct: 742 ESQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKFK-- 799
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI 359
EIS K A++I + +KEL +KI T L L + ++ +
Sbjct: 800 --EISYDKIATMIRPF--LLRRLKQDVVKELPDKIE--------TNLYSELTDEQKTIYL 847
Query: 360 LQPDEFQKRLCKA-----VEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARL 414
++ Q L ++ E +K L + + PSL F E++ +S KL +L
Sbjct: 848 AYLEKIQADLEESNGNAGEERIKLLAGLTR-LRQICCDPSL----FVENYQGESGKLLQL 902
Query: 415 KLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGK 474
F I +++L+FSQ+ L +I +L EG + YMDGK
Sbjct: 903 -----------FDTIQTARENGKRILIFSQFTGMLAIIRRKLEE-----EGHSLFYMDGK 946
Query: 475 QDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISR 534
K R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA R
Sbjct: 947 TPAKTRLDMVNAFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGR 1004
Query: 535 AYRLGQKRVVHVYHLITSETLE 556
A+R+GQKRVV V+ +IT T+E
Sbjct: 1005 AHRIGQKRVVQVFRMITKGTIE 1026
>gi|350408475|ref|XP_003488415.1| PREDICTED: DNA repair and recombination protein RAD54B-like [Bombus
impatiens]
Length = 820
Score = 143 bits (360), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 147/535 (27%), Positives = 232/535 (43%), Gaps = 85/535 (15%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQR G F+++ I G LK S G I++ G GKT + + +K
Sbjct: 233 PHQRHGIVFLYECIMG------LKVSNHFGA----ILADEMGLGKTLQCITIIWTLLKKG 282
Query: 132 PRCRPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P P+ I+ P + W +EFK+W + F+ ++ P + +N D +K
Sbjct: 283 PYGYPILKYILIVTPSCLCNNWNKEFKQW---LGFHRIS-PYVVNAKNKAK----DFKKH 334
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRN 246
R V +I SY L + E+ I +L + DEGH +N
Sbjct: 335 IRNSVMII-----------------SYDLLTR--CEQEVKEIPFNL---IICDEGHRLKN 372
Query: 247 DDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKA 306
+D K L +K +R+I+L+GTP QNN QE + V T+ S E
Sbjct: 373 NDIKAAKILYNLKCKRKILLTGTPIQNNLQEFFTLIDFVNP-------TILGSNSEFKNY 425
Query: 307 KHASLISSIGRCANHRDD------EKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+++S +C D E+ EL+EK F+ + + LP +V
Sbjct: 426 YEKPIVAS--QCPTAPDHVVSLGTERANELREKTKCFILRRTQETINKYLPSKHELIVFC 483
Query: 361 QPDEFQKRLCKAVEGV---KSFVELNY-------CVSLLSVHPSLLPQQFFESFDVDSAK 410
+ Q+ L V KS + N + + HP L + E F +DS K
Sbjct: 484 RLSIEQQDLYSQVTDSWFNKSLSDNNIPHLTVITALKKICNHPELFYNEKTELFCIDS-K 542
Query: 411 LARLKLDPEAGIKTRFLLILLEL-----STNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
+ +K D + + I+ L T EK+++ S Y + L I+E + ++ EG
Sbjct: 543 TSNIK-DSTKTVYCGKISIVQTLLRNLKKTEEKLVLVSYYTQTLD-ILETVCNK----EG 596
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ L +DG R I N S ++++ L S KA G+NL GASR++L D WNP
Sbjct: 597 LQFLRLDGSTTSNTRSKIIERFNSTSDKSKVFLLSAKAGGVGLNLPGASRLILFDSDWNP 656
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVF---PSS 577
+ QA++R +R GQK+ V++ L+T+ T+E +RQ K + V PSS
Sbjct: 657 ASDSQAMARIWRDGQKKDVYILRLLTTGTIEEKIFQRQISKASLNETVVDLNPSS 711
>gi|145491053|ref|XP_001431526.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124398631|emb|CAK64128.1| unnamed protein product [Paramecium tetraurelia]
Length = 1668
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 134/493 (27%), Positives = 233/493 (47%), Gaps = 60/493 (12%)
Query: 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLN 165
I++ G GKT T+ FL P +IIAP S L W+ ++W NLN
Sbjct: 570 ILADEMGLGKTIQTIAFLNHLYNFENYRGPFLIIAPLSTLQHWKRTVEEWT------NLN 623
Query: 166 KPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225
+E++ AL + + + V S IL SY +F + +
Sbjct: 624 AVLYYDQESSAGRALCRQYEFFYTDISMKGIVLQASEIYKFQILITSYEVFMQ-----DF 678
Query: 226 SGILLDLPGLF-VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
I +++P + V DE H +N + + ++L ++ +R ++L+GTP QNN +EL + L+
Sbjct: 679 QAIFINIPFQYIVVDEAHKLKNSNARILQSLKKLCCQRTLLLTGTPIQNNTEELFSLLNF 738
Query: 285 VR-QEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
+ +F ++ R+ G+ L +S +++++L + P++ +
Sbjct: 739 IEPYQFSNLISFKREYGQ---------LETS----------DQVEKLNVLLKPYILRRQK 779
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAV-EGVKSFVELNY------CVSLLSV----- 391
+++ +P L+ +++ ++ QK + KA+ E KS +E + SL ++
Sbjct: 780 EDVEQMIPPLQETIIDIEMTTIQKHIYKALYERNKSMLEQGFSQWAANAASLNNLEIQLR 839
Query: 392 ----HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNE--KVLVFSQY 445
HP L+ + + S K + E K L LL NE K+L+FSQ+
Sbjct: 840 KCCNHPFLIQEMQNDLTKGCSNKNDYILKLVECSGKMILLDKLLNKFRNEGKKMLIFSQF 899
Query: 446 IEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKA 503
L+++ E L+ R +V Y +DG+ ++RQ++I+ NDP + + L STKA
Sbjct: 900 TMMLSILEEYLKFR-------QVKYEKIDGQIKARERQNAIDRFNDPQKKREVFLLSTKA 952
Query: 504 CCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQ 563
+GINL A VV+ D WNP + QA +RA+R+GQ + V VY LIT +T E + R
Sbjct: 953 GGQGINLTAAEIVVIYDSDWNPQNDVQATARAHRIGQSKEVTVYRLITKDTYEAEMFERA 1012
Query: 564 ARKVWWSNMVFPS 576
+K+ +F S
Sbjct: 1013 IKKLGLDQAIFMS 1025
>gi|219128189|ref|XP_002184301.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404102|gb|EEC44050.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 975
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 163/598 (27%), Positives = 250/598 (41%), Gaps = 87/598 (14%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P VR + PHQ EG EF+W+ +A +N T + G I++ G GKT +T+
Sbjct: 308 LPASVRSVLRPHQEEGVEFLWQALAPMAVSGNEQNDTQSPA-RGAILADEMGLGKTLMTI 366
Query: 122 VFLQAYMKLHPRCRP---------------------VIIAPRSMLLTWEEEFKKWGIDIP 160
+ LH R R +++ P S++ W EF KW I
Sbjct: 367 AIIAG---LHRRQRDKTTPLSVKPSQLLCFGSFQQFIVVCPSSLVTNWAREFDKW---IG 420
Query: 161 FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV 220
+ K + K VA M R + K K+G +L +SY L + V
Sbjct: 421 RASQPKRVVIQKGGEEGVAAM------RAYCAGMLKKKKQLQKIGQ-VLIVSYDLLRRQV 473
Query: 221 SGDELSGILLDLPGLFVFDEGHTPRNDDTCM-FKALSRIKTRRRIILSGTPFQNNFQELE 279
+ + GL V DEGH +N + AL + R+ ++ TP QNN E
Sbjct: 474 EHLQDACAF----GLLVVDEGHRLKNTSGSLTLTALESLTADARLCITATPMQNNLSEFY 529
Query: 280 NTLSLVRQEFGEVLRTVRKS-GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
N ++ VR + L R S R IS A H S + A R E+ L+ PF+
Sbjct: 530 NLVNFVRPDVLGSLNEFRDSFDRPISAANHKHATPS--QIATSR--ERSSALETLTKPFI 585
Query: 339 -NVHKGTVLQESLPGLRHSVVILQPDEFQKRL------------CK--AVEGVKSFVELN 383
+ VL+ LP +++ +P E Q+ L C + +K+ L
Sbjct: 586 LRRLQADVLKSMLPPRVETLLFCRPSETQRALYHQLTARISGGSCTDGGTDALKTLTTLR 645
Query: 384 YCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILL----ELSTNEKV 439
+ HPS+ + ++ K LK D K L LL E + N+K+
Sbjct: 646 K----ICTHPSICNDDNVKPWN-RPEKGPCLKYDIALSGKMTVLDKLLQSIRENAPNDKI 700
Query: 440 LVFSQYIEPLT----LIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN--DPSSQ 493
+V S Y LT LI+ + F L +DG + +RQ + N P
Sbjct: 701 VVVSNYTSALTIVESLILGPRKLGF--------LRLDGGTESSQRQPLVESFNRSHPEKV 752
Query: 494 ARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553
++L+S C G+NLVGA+R++LLD WNP + QA+ R YR GQ + +Y L T+
Sbjct: 753 FCLLLSSKAGGC-GLNLVGANRLLLLDPDWNPASDVQAMGRVYRQGQTKPCWIYRLFTTG 811
Query: 554 TLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSETLI 611
T+E L+RQ +K N+ + DGG + + +S+ EE+ + E I
Sbjct: 812 TVEEVILQRQLQK---GNLTAWTVDGGKSSRQNSSDSRAKFSKEELTAAFTLKDEYCI 866
>gi|340720108|ref|XP_003398485.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair and recombination
protein RAD54B-like [Bombus terrestris]
Length = 824
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 145/538 (26%), Positives = 229/538 (42%), Gaps = 87/538 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQR G F+++ I G LK S G I++ G GKT + + +K
Sbjct: 233 PHQRHGIVFLYECIMG------LKISNYFGA----ILADEMGLGKTLQCITIIWTLLKKG 282
Query: 132 PRCRPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P P+ I+ P + +W +EFK W + F+ ++ P + +N D +K
Sbjct: 283 PYGYPILKYILIVTPSCLCNSWNKEFKHW---LGFHRIS-PYVVDAKNKTK----DFKKH 334
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
R V +I SY + + E ++P L + DEGH +
Sbjct: 335 IRNSVMII-----------------SYDMLTRCEQEVE------EIPFNLIICDEGHRLK 371
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+D K L +K +RRIIL+GTP QNN QE + V T+ S E
Sbjct: 372 NNDIKAAKILHNLKCKRRIILTGTPIQNNLQEFFTLIDFVNP-------TILGSNSEFKN 424
Query: 306 AKHASLISSIGRCANHRDD------EKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI 359
+++S +C D E+ EL+EK F+ + + LP +V
Sbjct: 425 YYEKPIVAS--QCPTAPDHVVSLGTERANELREKTKCFILRRTQETINKYLPSKHELIVF 482
Query: 360 LQPDEFQKRLCKAVEGV--------KSFVELNYCVSLLSV--HPSLLPQQFFESFDVDSA 409
+ Q+ L V + L +L + HP L + E F +DS
Sbjct: 483 CRLSIEQQDLYSQVTDSWFNKNPSNNNISHLTVITALKKICNHPELFYNEKTELFCIDSK 542
Query: 410 ---KLARLKLDPEAGIKTRFLLILLEL----STNEKVLVFSQYIEPLTLIMEQLRHRFNW 462
K + +K + + ++ L T EK+++ S Y + L I+E + +
Sbjct: 543 GIHKTSNIKDSTKTVYYGKISIVQTLLRNXKKTEEKLVLVSYYTQTLD-ILETVCN---- 597
Query: 463 REGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVV 522
REG + L +DG R I N + +++ L S KA G+NL GASR++L D
Sbjct: 598 REGLQFLRLDGSTTSNTRSKIIERFNSTNDNSKVFLLSAKAGGVGLNLPGASRLILFDSD 657
Query: 523 WNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVF---PSS 577
WNP + QA++R +R GQK+ V++ L+T+ T+E +RQ K + V PSS
Sbjct: 658 WNPASDSQAMARIWRDGQKKDVYILRLLTTGTIEEKIFQRQISKASLNETVVDLNPSS 715
>gi|422422347|ref|ZP_16499300.1| DNA/RNA helicase protein, partial [Listeria seeligeri FSL S4-171]
gi|313637601|gb|EFS03000.1| DNA/RNA helicase protein [Listeria seeligeri FSL S4-171]
Length = 512
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 143/507 (28%), Positives = 217/507 (42%), Gaps = 80/507 (15%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 49 LPAGLKAELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 93
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ P +PV I+ P S+L W+ E +K+ DIP L+ G + + V +
Sbjct: 94 SFLASELEETPDLKPVLIVTPASLLYNWQSELEKFAPDIPVTVLH-----GTKESRLVEM 148
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
D + RG V LI Y L IL L+ F ++ DE
Sbjct: 149 EDMK---RGHVYLISYPSLRQ-----DILNLADVNFSSVI-----------------IDE 183
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR +
Sbjct: 184 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIYQTLMPGFFPSLRKFK--- 240
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
EI K A++I + +KEL +KI T L L + ++ +
Sbjct: 241 -EIPYDKIATMIRPF--LLRRLKQDVVKELPDKIE--------TNLYSELTDEQKTIYLA 289
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLL-PQQFFESFDVDSAKLARLKLDPE 419
++ Q L ++ G S + L + P F E++ +S KL +L
Sbjct: 290 YLEKIQADLAES-NGNASEERIKLLAGLTRLRQICCDPSLFVENYQGESGKLLQL----- 343
Query: 420 AGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKK 479
F I +++L+FSQ+ L +I +L +GQ YMDGK K
Sbjct: 344 ------FDTIQTARENGKRLLIFSQFTGMLAIIRRKLEE-----DGQTFFYMDGKTPAKT 392
Query: 480 RQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLG 539
R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA RA+R+G
Sbjct: 393 RLDMVNSFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRAHRIG 450
Query: 540 QKRVVHVYHLITSETLEWDKLRRQARK 566
QKRVV V+ +IT T+E Q +K
Sbjct: 451 QKRVVQVFRMITKGTIEERIFELQKKK 477
>gi|347828015|emb|CCD43712.1| hypothetical protein [Botryotinia fuckeliana]
Length = 962
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 153/566 (27%), Positives = 241/566 (42%), Gaps = 107/566 (18%)
Query: 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP 132
HQ+EG +F+++ + G + G G I++ G GKT T+ L +K +P
Sbjct: 308 HQKEGVKFLYECVMGYRSFN----------GQGAILADEMGLGKTLQTIALLWTLLKQNP 357
Query: 133 RC--------RPVIIAPRSMLLTWEEEFKKW------GIDIPFYNLNKPELSGKENNGAV 178
+ +I+ P +++ W+ EF KW G+ + G +N +
Sbjct: 358 EHPHEGGVIKKALIVCPVTLISNWKAEFNKWLGNERIGVFV---------ADGSKN---I 405
Query: 179 ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVF 238
L D V +I Y KL + + E+L G SGI + V
Sbjct: 406 RLTDFTHGKSYSVMIIGYEKLRTVQ-------------EELKKG---SGI-----DIVVA 444
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK 298
DEGH + +A+ + T RR+ILSGTP QN+ E + V T +
Sbjct: 445 DEGHRLKTAANKSAQAIKNLNTERRVILSGTPIQNDLSEFFTMVDFVNPGLLNGYNTFK- 503
Query: 299 SGREISKAKHASLISSIGRCANHRDDEK----LKELKEKIAPFVNVHKGTVLQESLPGLR 354
K A ++ S A D EK +EL E F+ ++L + L
Sbjct: 504 ------KCFEAPILKSRQPGATESDMEKGTAREEELAELTKLFILRRNASILAKYLKPKT 557
Query: 355 HSVVILQPDEFQKRLCKAVEGVKSF----------VELNYCVSLLSVHPSLLPQQFFESF 404
V+ +P + Q + + V F ++L + + PSLL +
Sbjct: 558 EYVLFCKPTQAQAEVYQHVLASPVFGRVLGSSEASLQLITMLKKVCNAPSLL----VKKS 613
Query: 405 DVDS---AKLARL--KLDPE--------AGIKTRFL---LILLELSTNEKVLVFSQYIEP 448
D D+ + +A+L + PE A K R L L+ L ST EK+++ S Y
Sbjct: 614 DTDTPSNSNVAQLLESIPPEILKKNPVVASSKFRVLNRMLMRLSKSTTEKIVIVSNYTST 673
Query: 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND-PSSQARIMLASTKACCEG 507
L L++ L N L +DG KRQ +N N P+S+ L S K+ G
Sbjct: 674 LDLLVSHL-SSLNL----PFLRLDGSTPQAKRQDLVNTFNKTPASKYFAFLLSAKSGGAG 728
Query: 508 INLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567
INL+GASR+VL DV WNP + QA++R +R GQKR V +Y + S ++ +RQ K+
Sbjct: 729 INLIGASRLVLFDVDWNPATDLQAMARIHRDGQKRPVKIYRFLMSGGMDEKIYQRQVTKM 788
Query: 568 WWSNMVFPSSDGGGNDQTTASEPLED 593
++ V DG N+ + +++ L D
Sbjct: 789 GLADSVM---DGKKNEASFSADELRD 811
>gi|169767388|ref|XP_001818165.1| DNA-dependent ATPase [Aspergillus oryzae RIB40]
gi|83766020|dbj|BAE56163.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391871902|gb|EIT81051.1| DNA repair protein, SNF2 family [Aspergillus oryzae 3.042]
Length = 957
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 145/550 (26%), Positives = 233/550 (42%), Gaps = 89/550 (16%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+++ + G + G G I++ G GKT T+ L
Sbjct: 276 KHLRPHQREGVKFLYECVMG----------MRSFNGQGAILADDMGLGKTLQTITLLWTL 325
Query: 128 MKLHPRC-------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P + +I+ P +++ W +EF+KW G E G
Sbjct: 326 LKQNPIYENPPEVKKALIVCPVTLINNWRKEFRKW--------------LGNERIGVFVF 371
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE--LSGILLDLPGLFVF 238
D RKR L + + ++ + I+G +EKL + E G +D+ +
Sbjct: 372 DDKRKR------LTDFTRGRAYNIM--IVG-----YEKLRTVQEGLAQGAGVDI---IIA 415
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGEVLRTVR 297
DEGH + +A+ + +R+ILSGTP QN+ +E + LV G VR
Sbjct: 416 DEGHRLKTLQNKSGQAIQSLNATKRVILSGTPIQNDLKEFFAAVDLVNPGVLGNFKAFVR 475
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEK----LKELKEKIAPFVNVHKGTVLQESLPGL 353
+ I K++ A +D EK +EL+E + F+ +L LP
Sbjct: 476 EFEVPIVKSRQPE--------ATRKDIEKGEARNEELRELTSQFMLRRTADILANYLPPK 527
Query: 354 RHSVVILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSVHPSLL------- 396
++ P Q + + AV ++ ++L + L PSLL
Sbjct: 528 SEYILFCDPTPTQANIYQNVLASPVFQCAVGNSENALQLITILKKLCNSPSLLSPRNVDE 587
Query: 397 -PQQFFESFDVDSAKLARLKLDPEAGIKTRFL---LILLELSTNEKVLVFSQYIEPLTLI 452
P + + P + K R L L +L ST+EKV++ S Y L L+
Sbjct: 588 KPSETIAALLSSLPPNLLRHFSPSSSAKIRVLDQLLHILHTSTSEKVVLVSNYTSTLNLL 647
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND-PSSQARIMLASTKACCEGINLV 511
L L +DG +KRQS + N P+++ L S KA G+NL+
Sbjct: 648 ATLLTSLS-----LPFLRLDGSTPAQKRQSLVEDFNRFPTNRCFAFLLSAKAGGTGLNLI 702
Query: 512 GASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSN 571
GASR++L DV WNP + QA++R +R GQKR +Y ++ +LE +RQ K+ ++
Sbjct: 703 GASRLILFDVDWNPATDIQAMARIHRDGQKRHCRIYRILLKGSLEEKIWQRQVTKLGLAD 762
Query: 572 MVFPSSDGGG 581
V D
Sbjct: 763 SVMEHKDNAA 772
>gi|355557962|gb|EHH14742.1| hypothetical protein EGK_00712 [Macaca mulatta]
Length = 705
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 140/557 (25%), Positives = 238/557 (42%), Gaps = 96/557 (17%)
Query: 49 DPFTHAQGTVWELVPRDVRKKM----FPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGN 104
DP ++E P ++ + H G +F+W+ + S G +
Sbjct: 111 DPLEKDALVLYEPPPLSAHDQLKLDKYVHWYFGVKFLWECV----------TSRRIPGSH 160
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDI 159
GCI++ G GKT + + ++ P C+P ++++P S++ W E KW
Sbjct: 161 GCIMADEMGLGKTLQCITLMWTLLRQSPECKPEIDKAMVVSPSSLVKNWYNEVGKW---- 216
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
L G+ A+ D + L ++ ++ + IL +SY F
Sbjct: 217 ---------LGGRIQPLAI---DGGSKDEIDQKLEGFMNQRGARVPSPILIISYETFRLH 264
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
V + + GL + DEGH +N + ++AL + T RR+++SGTP QN+ E
Sbjct: 265 VGVLQKGSV-----GLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY- 318
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGR-CANHRDDEKLKELKEKIAPFV 338
SLV +L T + KH L GR A D KL E E++
Sbjct: 319 --FSLVHFVNSGILGTAHEF------KKHFELPILKGRDAAASEADRKLGE--ERLRELT 368
Query: 339 N-VHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVE---------LNYCVSL 388
+ V++ T LQ E KR + + + E +
Sbjct: 369 SIVNRLTPLQT---------------ELYKRFLRQAKPAEELREGKMSVSSLSSITSLKK 413
Query: 389 LSVHPSLLPQQ-------FFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEK 438
L HP+L+ + F + D+ + L+P+ K L +L ++ +++K
Sbjct: 414 LCNHPALIHDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRSCSSDK 473
Query: 439 VLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARI 496
V++ S Y + L L + R R LY +DG +KKR + N PSS +
Sbjct: 474 VVLVSNYTQTLDLFEKLCRAR-------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFV 526
Query: 497 MLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
+ S+KA G+NL+GA+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E
Sbjct: 527 FMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIE 586
Query: 557 WDKLRRQARKVWWSNMV 573
+RQ+ K S+ V
Sbjct: 587 EKIFQRQSHKKALSSCV 603
>gi|194386250|dbj|BAG59689.1| unnamed protein product [Homo sapiens]
Length = 567
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 132/495 (26%), Positives = 224/495 (45%), Gaps = 69/495 (13%)
Query: 113 GTGKTGLTLVFLQAYMKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKP 167
G GKT + + ++ P C+P V+++P S++ W E KW
Sbjct: 6 GLGKTLQCITLMWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKW------------ 53
Query: 168 ELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG 227
L G+ A+ D + L ++ ++ + IL +SY F V +
Sbjct: 54 -LGGRIQPLAI---DGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGS 109
Query: 228 ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
+ GL + DEGH +N + ++AL + T RR+++SGTP QN+ E SLV
Sbjct: 110 V-----GLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHF 161
Query: 288 EFGEVLRTVRKSGREISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKG 343
+L T E K ++ A+ D +E+L+EL + +
Sbjct: 162 VNSGILGT----AHEFKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTS 217
Query: 344 TVLQESLPGLRHSVVI-----LQPDEFQKRLCKA------VEGVKSFVELNYCVSL--LS 390
+L + LP VV LQ + +++ L +A +EG S L+ SL L
Sbjct: 218 DILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSPLSSITSLKKLC 277
Query: 391 VHPSLLPQQ-------FFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVL 440
HP+L+ + F + D+ + L+P+ K L +L ++ +++KV+
Sbjct: 278 NHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVV 337
Query: 441 VFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIML 498
+ S Y + L L + R R LY +DG +KKR + N PSS + +
Sbjct: 338 LVSNYTQTLDLFEKLCRAR-------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFM 390
Query: 499 ASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWD 558
S+KA G+NL+GA+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E
Sbjct: 391 LSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEK 450
Query: 559 KLRRQARKVWWSNMV 573
+RQ+ K S+ V
Sbjct: 451 IFQRQSHKKALSSCV 465
>gi|154316345|ref|XP_001557494.1| hypothetical protein BC1G_03758 [Botryotinia fuckeliana B05.10]
Length = 917
Score = 142 bits (357), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 153/566 (27%), Positives = 241/566 (42%), Gaps = 107/566 (18%)
Query: 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP 132
HQ+EG +F+++ + G + G G I++ G GKT T+ L +K +P
Sbjct: 263 HQKEGVKFLYECVMGYRSFN----------GQGAILADEMGLGKTLQTIALLWTLLKQNP 312
Query: 133 RC--------RPVIIAPRSMLLTWEEEFKKW------GIDIPFYNLNKPELSGKENNGAV 178
+ +I+ P +++ W+ EF KW G+ + G +N +
Sbjct: 313 EHPHEGGVIKKALIVCPVTLISNWKAEFNKWLGNERIGVFV---------ADGSKN---I 360
Query: 179 ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVF 238
L D V +I Y KL + + E+L G SGI + V
Sbjct: 361 RLTDFTHGKSYSVMIIGYEKLRTVQ-------------EELKKG---SGI-----DIVVA 399
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK 298
DEGH + +A+ + T RR+ILSGTP QN+ E + V T +
Sbjct: 400 DEGHRLKTAANKSAQAIKNLNTERRVILSGTPIQNDLSEFFTMVDFVNPGLLNGYNTFK- 458
Query: 299 SGREISKAKHASLISSIGRCANHRDDEK----LKELKEKIAPFVNVHKGTVLQESLPGLR 354
K A ++ S A D EK +EL E F+ ++L + L
Sbjct: 459 ------KCFEAPILKSRQPGATESDMEKGTAREEELAELTKLFILRRNASILAKYLKPKT 512
Query: 355 HSVVILQPDEFQKRLCKAVEGVKSF----------VELNYCVSLLSVHPSLLPQQFFESF 404
V+ +P + Q + + V F ++L + + PSLL +
Sbjct: 513 EYVLFCKPTQAQAEVYQHVLASPVFGRVLGSSEASLQLITMLKKVCNAPSLL----VKKS 568
Query: 405 DVDS---AKLARL--KLDPE--------AGIKTRFL---LILLELSTNEKVLVFSQYIEP 448
D D+ + +A+L + PE A K R L L+ L ST EK+++ S Y
Sbjct: 569 DTDTPSNSNVAQLLESIPPEILKKNPVVASSKFRVLNRMLMRLSKSTTEKIVIVSNYTST 628
Query: 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND-PSSQARIMLASTKACCEG 507
L L++ L N L +DG KRQ +N N P+S+ L S K+ G
Sbjct: 629 LDLLVSHL-SSLNL----PFLRLDGSTPQAKRQDLVNTFNKTPASKYFAFLLSAKSGGAG 683
Query: 508 INLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567
INL+GASR+VL DV WNP + QA++R +R GQKR V +Y + S ++ +RQ K+
Sbjct: 684 INLIGASRLVLFDVDWNPATDLQAMARIHRDGQKRPVKIYRFLMSGGMDEKIYQRQVTKM 743
Query: 568 WWSNMVFPSSDGGGNDQTTASEPLED 593
++ V DG N+ + +++ L D
Sbjct: 744 GLADSVM---DGKKNEASFSADELRD 766
>gi|336371187|gb|EGN99526.1| hypothetical protein SERLA73DRAFT_72346 [Serpula lacrymans var.
lacrymans S7.3]
gi|336383951|gb|EGO25099.1| hypothetical protein SERLADRAFT_436866 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1121
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 149/591 (25%), Positives = 246/591 (41%), Gaps = 104/591 (17%)
Query: 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQ 125
+ + + PHQ EG F++ + G L+ G GCI++ G GKT T++ +
Sbjct: 384 IARYLRPHQVEGVRFLYDCVMG------LRKHE----GQGCILADEMGLGKTLQTIMLVW 433
Query: 126 AYMKLHPRC-------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV 178
+K +P + +I+ P S++ W EF KW G++ G
Sbjct: 434 TLLKQNPYAGVGPVIGKALIVCPVSLVNNWRAEFHKW--------------LGRDRVGV- 478
Query: 179 ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYR-LFEKLVSGDE-LSGILLDLP--- 233
++ + K + VKL W YR + + L+ G E L ++ DL
Sbjct: 479 -FTGDKDKAVIKQFINSCVKLLLWLSPIKNRRAHYRRIHQVLIIGYERLRTVIADLAYCN 537
Query: 234 ---GLFVFDEGH---TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
GL + DEGH + N + MF+AL +T RRIILSGTP QN+ E ++VR
Sbjct: 538 PPIGLIICDEGHRLKSANNKTSTMFRAL---RTPRRIILSGTPIQNDLSEFH---AMVRF 591
Query: 288 EFGEVLRTVRKSGREIS------------KAKHASLISSIGRCANHRDDE----KLKELK 331
F + K+ + + ++ S +D E + +L
Sbjct: 592 IFSSEFFLLDKAQADFCNPGLLDDYTTFRRVYEVPILRSRAPDCTDKDTEIGEARSSQLS 651
Query: 332 EKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV---EGVKSFVELNYC--V 386
FV + T+L+ LP VV + P Q + + + + + ++ + +
Sbjct: 652 TIAKSFVLRREATILKNYLPPKHEYVVFVTPTRLQLSIFSTILNADKLDNIIQSSTAESL 711
Query: 387 SLLSVHPSLLPQQFFESFDVDSAKL------------ARLKLDPEAGIKTRF-------- 426
+L++V + D AK LKL P F
Sbjct: 712 ALINVLTKVSNSPILLKATADKAKALGNNSFKQRGIEEALKLLPGHAQIEDFSLSGKLSA 771
Query: 427 ---LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSS 483
LL + T+EK ++ S Y L +I F ++ +DG+ KRQ
Sbjct: 772 LSNLLKTIREYTDEKCIIVSHYTSTLNII-----EAFCMKKSYTYFRLDGQTPAAKRQEY 826
Query: 484 INVLNDPSSQARIM-LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKR 542
+N+ N S +R + L S+KA G+NL+GASR+ L+D WNP + Q+++R +R GQKR
Sbjct: 827 VNIFNKSSQYSRFLFLLSSKAGGVGLNLIGASRLCLIDSDWNPSHDLQSMARIHRDGQKR 886
Query: 543 VVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLED 593
V +Y +T+E + +RQ K+ SN + S G + + + L D
Sbjct: 887 PVFIYRFLTAEKI----YQRQVTKIGLSNSLMGSGTSGSKSDSFSRKDLRD 933
>gi|432908561|ref|XP_004077922.1| PREDICTED: DNA repair and recombination protein RAD54B-like
[Oryzias latipes]
Length = 928
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 144/563 (25%), Positives = 239/563 (42%), Gaps = 93/563 (16%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
+ + PHQR+G F+++ + G G I++ G GKT ++
Sbjct: 322 QHLRPHQRDGLLFLYECVMG----------MRVASCYGAILADEMGLGKTLQSVALSWTL 371
Query: 128 MKLHPRC------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
+K P R +++ P S++ W+ EF KW L + +S V +
Sbjct: 372 LKQGPYGGKPVAKRVLVVTPGSLVQNWKAEFNKW--------LGRERIS-------VFTV 416
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
D R ++ + +L +SY + + + +++ + GL + DEG
Sbjct: 417 DQDHR----------IEQFVLSPLHSVLVISYEMLLRCL--EQVQKVEF---GLIICDEG 461
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301
H +N AL+ + RR+IL+GTP QN+ QE + V RK
Sbjct: 462 HRLKNSSIKTSSALTSLSCDRRVILTGTPVQNDLQEFHAIIEFVNPGILGSPTAYRKLYE 521
Query: 302 E-ISKAKHASLISSIGRCANHR---DDEKLKELKEKIAPFVNVHKGTVLQESLP-----G 352
E I +++ S C +E+ EL F+ ++ LP
Sbjct: 522 EPILRSRQPS-------CTEEERVLGEERAAELSRLTGMFILRRTQEIINRYLPPRVDWT 574
Query: 353 LRHSVVILQPDEFQKRLCKAV-----EGVKSFVELNYCVSLLSV---HPSLL---PQQFF 401
L LQ + +Q+ LC V +G C++ L HP LL ++
Sbjct: 575 LFCEPSALQQELYQRLLCHRVFRDCMQGSTQTSTHLACITALKKLCNHPGLLYATVKERT 634
Query: 402 ESFDVDSAKLARLK-LDPE----AGIKTR----------FLLILLELSTNEKVLVFSQYI 446
ES ++S+ RL L PE AG T L + +LS +++V++ S Y
Sbjct: 635 ESGTLESSLYERLADLFPETYSLAGFNTADSGKLLVLSDLLAAIRQLSPSDRVVLVSNYT 694
Query: 447 EPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCE 506
+ L L+ + +H G +DG+ +RQ ++ N SQ + L S+KA
Sbjct: 695 QTLDLLQDLCKHM-----GYTFCRLDGQTPTGQRQRLVDGFNSSYSQNFLFLLSSKAGGV 749
Query: 507 GINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
G+NL+GAS +VL D+ WNP + QA++R +R GQK+ VH+Y L+T+ T+E +RQ K
Sbjct: 750 GLNLIGASHLVLYDIDWNPANDIQAMARVWRDGQKKTVHIYRLLTAGTIEERIYQRQVSK 809
Query: 567 VWWSNMVFPSSDGGGNDQTTASE 589
S V G + ++SE
Sbjct: 810 QGLSGTVVDMGKGAEHTSFSSSE 832
>gi|330803641|ref|XP_003289812.1| hypothetical protein DICPUDRAFT_36354 [Dictyostelium purpureum]
gi|325080071|gb|EGC33642.1| hypothetical protein DICPUDRAFT_36354 [Dictyostelium purpureum]
Length = 731
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 148/563 (26%), Positives = 253/563 (44%), Gaps = 95/563 (16%)
Query: 58 VWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT 117
V +V + + + PHQR G +F++ + G + + G G I++ G GKT
Sbjct: 35 VHVIVDPHISQHLRPHQRRGVKFLYDCVTG---------TNNEEGYTGAILADQMGLGKT 85
Query: 118 GLTLVFLQAYMKLHPRCR-----PVIIAPRSMLLTWEEEFKKW-GIDIPFYNLNKPELSG 171
TL + +K P + +I+ P +++ W++E +KW G+D L L+
Sbjct: 86 LQTLALVWTLLKQSPTGKSTIKKAIIVTPSTLVNNWKKEIQKWFGLD----RLIATTLTD 141
Query: 172 KENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLD 231
+ +DN V +I Y + R+F K++ + +S
Sbjct: 142 SLSKETKTNLDNFNTSIKPVLIISYEQC--------------RIFSKIL--ETMSC---- 181
Query: 232 LPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ-EFG 290
GL V DE H +N ++ +A++ +K R+I+L+GTP QN+ E + + G
Sbjct: 182 --GLLVCDEAHRLKNSNSKTTQAINSVKAERKILLTGTPIQNDLVEFYSMVDFCNPGSLG 239
Query: 291 EVLRTVRKSGREISKAKHASLISSIGRCANHRDDE----KLKELKEKIAPFVNVHKGTVL 346
+ + I+K++ ++ N +D E K EL + F+ K +L
Sbjct: 240 SLASFKKNFINPINKSREST--------GNPKDIENGTKKSIELSKLTKSFILRRKSNIL 291
Query: 347 QESLPGLRHSVVILQPDEFQKRLCKAV---EGVKSFVE--------LNYCVSL--LSVHP 393
++ LP R VV + Q+ L K+V V+S + L+ L L P
Sbjct: 292 EKYLPPKRVQVVFCRLSPLQQDLYKSVLNSNSVQSLINGKESPASSLSTITLLKKLCNSP 351
Query: 394 SLLP-------QQFFE--SFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVF 442
SLL Q F+ S++++S ++ EAG K F+ L++ S EK+++
Sbjct: 352 SLLQDTSDQELQSIFKQYSYNMES-------MENEAG-KLLFVESLIKQLKSVGEKLVLV 403
Query: 443 SQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA-RIMLAST 501
S Y + L + R + + L +DG RQS ++ ND S++ +I L S
Sbjct: 404 SNYTQTLDVF-----ERLCKKLSTDFLRLDGSVSSDTRQSLVDKFNDQSNKKYQIFLLSA 458
Query: 502 KACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561
KA GINL+G + +VL D WNP ++ QA+ R +R GQ + V +Y L ++ T+E +
Sbjct: 459 KAGGVGINLIGGNHLVLYDPDWNPAIDIQAMERVWREGQNKPVFIYRLFSTGTIEEKIYQ 518
Query: 562 RQARKVWWSNMVFP---SSDGGG 581
RQ K SN + + +GGG
Sbjct: 519 RQLMKESISNSIVDKKFNDNGGG 541
>gi|425775549|gb|EKV13810.1| DsDNA-dependent ATPase (Rad54b), putative [Penicillium digitatum
PHI26]
gi|425783707|gb|EKV21537.1| DsDNA-dependent ATPase (Rad54b), putative [Penicillium digitatum Pd1]
Length = 1502
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 151/558 (27%), Positives = 242/558 (43%), Gaps = 88/558 (15%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+++ + G + G G I++ G GKT T+ L
Sbjct: 803 KNLRPHQREGVKFLYECVMGMRPFN----------GEGAILADDMGLGKTLQTIALLWTL 852
Query: 128 MKLHP--RCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P PVI + P +++ W +EF+KW G E G
Sbjct: 853 LKQNPVFEAPPVIKKALIVCPVTLINNWRKEFRKW--------------LGSERIGVFVF 898
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL----SGILLDLPGLF 236
D KR L + K ++ + I+G +EKL + E SG+ +
Sbjct: 899 DDKSKR------LTDFTKGRAYSIM--IVG-----YEKLRTVQEALANSSGV-----DII 940
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTV 296
+ DEGH + +A+ + +R+ILSGTP QN+ +E + LV +L
Sbjct: 941 IADEGHRLKTLQNKSGQAIQSLSAVKRVILSGTPIQNDLREFFAAVDLVNPG---ILGNF 997
Query: 297 RKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHS 356
+ RE S R + + + +EL+E + F+ +L + LP
Sbjct: 998 KSFIREFETPIVRSRQPEATRKEIEKGESRGEELRELTSKFMLRRTADILAKYLPPKTEY 1057
Query: 357 VVILQPDEFQKRLCKAV----------EGVKSFVELNYCVSLLSVHPSLL--------PQ 398
V+ +P Q + KAV +S ++L + LS PSLL P
Sbjct: 1058 VLFCKPTRPQANIYKAVLTSPIFQTAMGNAESALQLITILKKLSNSPSLLTAKNNDDTPN 1117
Query: 399 QFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL---STNEKVLVFSQYIEPLTLIMEQ 455
+ + + L P + K R L LL+ T+EK+++ S Y L+L+
Sbjct: 1118 ETMSALIESIPQPLHRHLSPSSSAKIRVLDQLLDTMRNKTDEKIVLVSNYTSTLSLLATL 1177
Query: 456 LRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND-PSSQARIMLASTKACCEGINLVGAS 514
L L +DG +KRQ ++ N P+S L S KA G+NL+GAS
Sbjct: 1178 LTSLG-----LPYLRLDGSTPAQKRQGLVDDFNRLPASSCFAFLLSAKAGGTGLNLIGAS 1232
Query: 515 RVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVF 574
R++L DV WNP + QA++R +R GQKR +Y ++ +LE +RQ K+ ++ V
Sbjct: 1233 RLILFDVDWNPATDIQAMARIHRDGQKRPCRIYRVLLKGSLEEKIWQRQVTKLGLADSVM 1292
Query: 575 P---SSDGGGNDQTTASE 589
+S+GG Q +A+E
Sbjct: 1293 QEKNTSNGGA--QFSAAE 1308
>gi|345563719|gb|EGX46704.1| hypothetical protein AOL_s00097g452 [Arthrobotrys oligospora ATCC
24927]
Length = 920
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 148/552 (26%), Positives = 240/552 (43%), Gaps = 89/552 (16%)
Query: 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQ 125
+ + + PHQREG F+++ + G + G G I++ G GKT T+ L
Sbjct: 268 ISRHLRPHQREGVSFLYEAVMGMRPYE----------GRGAILADEMGLGKTLQTIALLW 317
Query: 126 AYMKLHPRC-------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV 178
+K +P + +I+ P S++ W EFKKW L + + V
Sbjct: 318 TLLKQNPIYNQGPVVKKAMIVCPVSLINNWRREFKKW-------------LGNERIHVFV 364
Query: 179 ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS-GDELSGILLDLPGLFV 237
A G+ V + +Y+ I+G +E+L S D+L +D+ +
Sbjct: 365 A------DGKSNVRDFTHGPVYN----VMIVG-----YERLRSIQDKLKQCQVDI---II 406
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DEGH + + +A+ + T RR++LSGTP QN+ +E V E T +
Sbjct: 407 ADEGHRLKTAENKSAQAIRSLATPRRVVLSGTPLQNDLREFFVMADFVNPGILENYSTFK 466
Query: 298 KS-GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHS 356
K I K++ + + N R L EL K FV +L + LP
Sbjct: 467 KQFENPIVKSQQPEALKADKELGNAR-KASLAELMNK---FVLRRTAKILTKYLPPKTDV 522
Query: 357 VVILQPDEFQKRLCKAVEGV----KSFVELNYCVSLLSV------HPSLLPQQFFESFDV 406
V+ +P + Q L +A+ + ++ + L+++ SLL + E
Sbjct: 523 VLFCRPTKQQLELYQAIINTSVAKRQMGSMDTALQLITLLKKVCNSTSLLKPKGKED--- 579
Query: 407 DSAKLARLKLDPEAGIKTRF---------------LLILLELSTNEKVLVFSQYIEPLTL 451
D AKL+ L+ EA + LL+ L+ +T EKV++ S Y L +
Sbjct: 580 DEAKLSNSILE-EAKVAGSALVNSNSSGKLKVLEKLLVTLKETTQEKVVLVSNYTSTLDI 638
Query: 452 IMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQ-ARIMLASTKACCEGINL 510
+ L + G L +DGK KRQ ++ N SS A L S+K+ G+NL
Sbjct: 639 LERMLNSK-----GFHHLRLDGKTPTNKRQDLVDKFNRVSSDVAFAFLLSSKSGGAGLNL 693
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS 570
+GASR+ L D WNP + QA++R +R GQK V++Y +IT+ ++ +RQ K +
Sbjct: 694 IGASRLFLFDSDWNPATDLQAMARVHRDGQKSHVYIYRMITTGCIDEKIYQRQITKQGLA 753
Query: 571 NMVFPSSDGGGN 582
+ V GG N
Sbjct: 754 DSVMDQKAGGSN 765
>gi|195496103|ref|XP_002095551.1| GE22457 [Drosophila yakuba]
gi|194181652|gb|EDW95263.1| GE22457 [Drosophila yakuba]
Length = 1982
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 141/539 (26%), Positives = 238/539 (44%), Gaps = 69/539 (12%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-Y 127
++ P+Q EG ++ + GID I++ G GKT T+ FL + Y
Sbjct: 729 QLHPYQIEGINWLRYSWGQGID---------------TILADEMGLGKTIQTVTFLYSLY 773
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG 187
+ H R ++ P S L+ WE EF+ W D FY + G +++ AV +
Sbjct: 774 KEGHCRGPFLVAVPLSTLVNWEREFELWAPD--FYCIT---YIGDKDSRAVIRENELSFE 828
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND 247
G + + +L + + +L SY +L+S D +D + V DE H +++
Sbjct: 829 EGAIRGSKVSRLRTTQYKFNVLLTSY----ELISMDAACLGSIDW-AVLVVDEAHRLKSN 883
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAK 307
+ F+ L+ +++L+GTP QNN +EL + L+ +S+ K
Sbjct: 884 QSKFFRILNSYTIAYKLLLTGTPLQNNLEELFHLLNF------------------LSRDK 925
Query: 308 HASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQK 367
L + G A+ +E++K L E + P + T + +++P +V ++ QK
Sbjct: 926 FNDLQAFQGEFADVSKEEQVKRLHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVELSAMQK 985
Query: 368 RLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKLAR 413
+ K + K++ LN SL+++ HP L P E+
Sbjct: 986 KFYKFI-LTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSAAEEATTSAGGLYEI 1044
Query: 414 LKLDPEAGIKTRFLLILLEL-STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY-- 470
L AG +L +L S N +VL+FSQ + L ++ + L EG++ Y
Sbjct: 1045 NSLTKAAGKLVLLSKMLKQLKSQNHRVLIFSQMTKMLDILEDFL-------EGEQYKYER 1097
Query: 471 MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQ 530
+DG RQ +I+ N P +Q + L ST+A GINL A V++ D WNP + Q
Sbjct: 1098 IDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1157
Query: 531 AISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASE 589
A SRA+R+GQ V +Y +T ++E + RK+ +++V GG T E
Sbjct: 1158 AFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGANFTKQE 1216
>gi|195166785|ref|XP_002024215.1| GL22908 [Drosophila persimilis]
gi|194107570|gb|EDW29613.1| GL22908 [Drosophila persimilis]
Length = 1898
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 141/539 (26%), Positives = 236/539 (43%), Gaps = 69/539 (12%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-Y 127
++ P+Q EG ++ + ID I++ G GKT T+ FL + Y
Sbjct: 593 QLHPYQIEGINWLRYSWGQAID---------------TILADEMGLGKTIQTVTFLYSLY 637
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG 187
+ H R ++ P S L+ WE EF+ W D FY + G +++ AV +
Sbjct: 638 KEGHCRGPFLVAVPLSTLVNWEREFELWAPD--FYCIT---YIGDKDSRAVIRENELSFE 692
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND 247
G + + +L + + +L SY +L+S D +D + V DE H +++
Sbjct: 693 EGAIRGSKVSRLRTTQYKFNVLLTSY----ELISMDAACLGSIDW-AVLVVDEAHRLKSN 747
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAK 307
+ F+ L+ +++L+GTP QNN +EL + L+ +S+ K
Sbjct: 748 QSKFFRILNSYSIAYKLLLTGTPLQNNLEELFHLLNF------------------LSRDK 789
Query: 308 HASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQK 367
L + G A+ +E++K L E + P + T + +++P +V ++ QK
Sbjct: 790 FNDLQAFQGEFADVSKEEQVKRLHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVELSAMQK 849
Query: 368 R-----LCKAVEGVKSFVELNYCVSLLSV---------HPSLLPQQFFESFDVDSAKLAR 413
+ L K E + S C SL+++ HP L P E+
Sbjct: 850 KFYKFILTKNYEALNSKTGGGSC-SLINIMMDLKKCCNHPYLFPSAAEEAQTAAGGLYEI 908
Query: 414 LKLDPEAGIKTRFLLILLEL-STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY-- 470
L AG +L +L S N +VL+FSQ + L ++ + L EG++ Y
Sbjct: 909 NSLTKAAGKLVLLSKMLRQLKSQNHRVLIFSQMTKMLDILEDFL-------EGEQYKYER 961
Query: 471 MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQ 530
+DG RQ +I+ N P +Q + L ST+A GINL A V++ D WNP + Q
Sbjct: 962 IDGGITGTVRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1021
Query: 531 AISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASE 589
A SRA+R+GQ V +Y +T ++E + RK+ +++V GG T E
Sbjct: 1022 AFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGANFTKQE 1080
>gi|71755407|ref|XP_828618.1| DNA repair/recombination protein RAD54 [Trypanosoma brucei TREU927]
gi|70834004|gb|EAN79506.1| DNA repair and recombination protein RAD54, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 1037
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 153/578 (26%), Positives = 244/578 (42%), Gaps = 102/578 (17%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM 128
K+ PHQR G +F++ I G G +G I++ G GKT T+ + +
Sbjct: 363 KLRPHQRIGVKFLFDCITG----------QRMPGYHGAILADEMGLGKTIQTVATVYTCL 412
Query: 129 KLH----PRCRP-VIIAPRSMLLTWEEEFKKW-GIDIPFYNLNKPELSGKENNGAVALMD 182
K P R +I+ P S++ W EF KW G+ Y LS E+ +
Sbjct: 413 KQGRYGVPTARKCLIVTPSSLVKNWCNEFDKWLGVGAVKY------LSISESTPKGDRII 466
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+R G G V +I Y +L + L K V L V DEGH
Sbjct: 467 SRFDGDGDVLVISYDQLRKYISRISTL--------KSVE-------------LVVCDEGH 505
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-------RQEFGEVLRT 295
+N + KA+ + TR RIILSGTP QN+ E + V R FG V
Sbjct: 506 KLKNAEVKTTKAVDMLPTRNRIILSGTPIQNDLSEFHAMVGFVNPGILGTRDVFGRVFEE 565
Query: 296 VRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRH 355
GR+ +H ++ + ++ L F+ ++ + LP
Sbjct: 566 PVTLGRDPDCPEHLRMLGA----------DRAHYLSTLTQRFILRRTQSINESYLPPKVD 615
Query: 356 SVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSV--------HPSLLPQQFFESFDVD 407
V ++ E Q+ +A E + + VE + C L+ + H L + S
Sbjct: 616 LTVFVRLGEKQR---EAYEKISAIVESSQCTPLVLISSLRKLCNHMDLFHEAVVSSNGDQ 672
Query: 408 SAKLARL------------KLDPEAGIKTRFL-LILLELSTN---EKVLVFSQYIEPLTL 451
K + L E G K +F+ L+L EL +N +K+++ S + + L +
Sbjct: 673 KGKGGGIPKSVLPKGYKVGTLSQEVGSKMQFVSLMLDELCSNGDHDKLVIVSNFTQTLDV 732
Query: 452 IMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLV 511
I + + +DG +K+RQ ++ N P+SQ + L S+KA G+NL+
Sbjct: 733 IAAMCKTK-----KISFFQLDGSMPIKRRQEVVDRFNVPNSQEIVFLLSSKAGGVGLNLI 787
Query: 512 GASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSN 571
GA+R++L D WNP + QA+ R +R GQK+ V +Y L+++ ++E +RQ K S
Sbjct: 788 GANRLILFDPDWNPANDAQAMGRVWRDGQKKRVFIYRLLSTGSIEEKIYQRQVSKQGLSA 847
Query: 572 MVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSET 609
V D T S+ + LEE+ L+ S+T
Sbjct: 848 NVV--------DMQTDSK--QHFTLEELRSLFRFRSDT 875
>gi|261334500|emb|CBH17494.1| DNA repair and recombination protein RAD54,putative [Trypanosoma
brucei gambiense DAL972]
Length = 1037
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 153/578 (26%), Positives = 244/578 (42%), Gaps = 102/578 (17%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM 128
K+ PHQR G +F++ I G G +G I++ G GKT T+ + +
Sbjct: 363 KLRPHQRIGVKFLFDCITG----------QRMPGYHGAILADEMGLGKTIQTVATVYTCL 412
Query: 129 KLH----PRCRP-VIIAPRSMLLTWEEEFKKW-GIDIPFYNLNKPELSGKENNGAVALMD 182
K P R +I+ P S++ W EF KW G+ Y LS E+ +
Sbjct: 413 KQGRYGVPTARKCLIVTPSSLVKNWCNEFDKWLGVGAVKY------LSISESTPKGDRII 466
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+R G G V +I Y +L + L K V L V DEGH
Sbjct: 467 SRFDGDGDVLVISYDQLRKYISRISTL--------KSVE-------------LVVCDEGH 505
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-------RQEFGEVLRT 295
+N + KA+ + TR RIILSGTP QN+ E + V R FG V
Sbjct: 506 KLKNAEVKTTKAVDMLPTRNRIILSGTPIQNDLSEFHAMVGFVNPGILGTRDVFGRVFEE 565
Query: 296 VRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRH 355
GR+ +H ++ + ++ L F+ ++ + LP
Sbjct: 566 PVTLGRDPDCPEHLRMLGA----------DRAHYLSTLTQRFILRRTQSINESYLPPKVD 615
Query: 356 SVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSV--------HPSLLPQQFFESFDVD 407
V ++ E Q+ +A E + + VE + C L+ + H L + S
Sbjct: 616 LTVFVRLGEKQR---EAYEKISAIVESSQCTPLVLISSLRKLCNHMDLFHEAVVSSNGDQ 672
Query: 408 SAKLARL------------KLDPEAGIKTRFL-LILLELSTN---EKVLVFSQYIEPLTL 451
K + L E G K +F+ L+L EL +N +K+++ S + + L +
Sbjct: 673 KGKGGGIPKSVLPKGYKVGTLSQEVGSKMQFVSLMLDELCSNGDHDKLVIVSNFTQTLDV 732
Query: 452 IMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLV 511
I + + +DG +K+RQ ++ N P+SQ + L S+KA G+NL+
Sbjct: 733 IAAMCKTK-----KISFFQLDGSMPIKRRQEVVDRFNVPNSQEIVFLLSSKAGGVGLNLI 787
Query: 512 GASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSN 571
GA+R++L D WNP + QA+ R +R GQK+ V +Y L+++ ++E +RQ K S
Sbjct: 788 GANRLILFDPDWNPANDAQAMGRVWRDGQKKRVFIYRLLSTGSIEEKIYQRQVSKQGLSA 847
Query: 572 MVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSET 609
V D T S+ + LEE+ L+ S+T
Sbjct: 848 NVV--------DMQTDSK--QHFTLEELRSLFRFRSDT 875
>gi|400599277|gb|EJP66981.1| SNF2 family domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 1654
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 143/557 (25%), Positives = 245/557 (43%), Gaps = 104/557 (18%)
Query: 65 DVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFL 124
++ ++ HQ EG F+W +I +++S+ GC+++H G GKT T+ FL
Sbjct: 766 EISSRIKEHQIEGVRFLWNHI--------VRDSSER---QGCLLAHTMGLGKTMQTITFL 814
Query: 125 QAYMK------LHPR---------CRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPEL 169
A + L R + +++ P ++ W++EF W +L +
Sbjct: 815 VALRESALSDDLTVRDQIPQDLRDWKVLVLCPSGLVENWKDEFLIWAPK----HLMEAIF 870
Query: 170 SGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLF--------EKLVS 221
+ + + + ++N K W + GIL + Y +F EK V+
Sbjct: 871 TVEAVHSPLQRVENAK---------------EWAVRGGILIIGYNMFKSEFRKGNEKTVT 915
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
D IL++ + + DE H+ +N T + + S +KT RI L+G+P NN +E
Sbjct: 916 VDR---ILVENARVVIADEAHSLKNPKTKITQVASDLKTSTRIALTGSPLANNVEEYYAM 972
Query: 282 LSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVH 341
++ V F L+ R + H L + + + L+ LK AP VH
Sbjct: 973 INWVAPNFLGPLQEFRDM---YATPIHQGLYNDSTPYEKRKAIKLLQVLKTTAAP--KVH 1027
Query: 342 KGTV---LQESLPGLRHSVVILQPDEFQKRLC-----------KAVEGVKSFVELNYCVS 387
+ T+ L++ LP V+ + P E Q++L VE F LN+ ++
Sbjct: 1028 RATMKSCLKDELPPKEEFVISVPPTEIQRKLYDLYMQATHNSGDKVEQATLFGVLNH-LA 1086
Query: 388 LLSVHPSLLPQQFFE------------SFDVDS-AKLARLKLDP-----EAGIKTRFLLI 429
L+ HP++ + E F +D+ ++ + DP E K L
Sbjct: 1087 LICAHPAVYRKHVIELRRKGEMGKDVARFPMDTIPQIMNMTSDPGLGRVELSYKVELLNK 1146
Query: 430 LLELST--NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVL 487
+L+ S+ +KVLVFSQ I L + + + + +DG + KRQ +
Sbjct: 1147 ILDQSSRMGDKVLVFSQSIPTLDYLA-----KLFGSQKRRFCRLDGSTQISKRQDMVKSF 1201
Query: 488 NDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVY 547
N S + + L ST A G+N+ GA+RVV+ D +NP ++QAI RAYR+GQ + V VY
Sbjct: 1202 NKGSEE--VYLISTNAGGVGLNIFGANRVVIFDFKYNPVSDQQAIGRAYRIGQTKPVFVY 1259
Query: 548 HLITSETLEWDKLRRQA 564
+ + + E D L+ +A
Sbjct: 1260 RFVVAGSFE-DDLQNKA 1275
>gi|328716042|ref|XP_003245819.1| PREDICTED: chromodomain-helicase-DNA-binding protein Mi-2 homolog
[Acyrthosiphon pisum]
Length = 2002
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 140/553 (25%), Positives = 238/553 (43%), Gaps = 91/553 (16%)
Query: 65 DVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFL 124
D ++ P+Q EG ++ + GID I++ G GKT T+ FL
Sbjct: 723 DTGMELHPYQLEGLNWLRYSWGQGID---------------TILADEMGLGKTIQTITFL 767
Query: 125 QA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVAL 180
+ Y + H + ++ P S L+ WE EF+ W D + + ++ +EN +
Sbjct: 768 YSLYKEGHCKGPFLVSVPLSTLINWEREFETWAPDFYVVSYVGDKDSRVTIRENEFSFDD 827
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP------- 233
+ R G++++ +L SY L I +D P
Sbjct: 828 TRSGVRCNKIKGIVKF----------HVLLTSYEL------------ISIDAPLLGSIEW 865
Query: 234 GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVL 293
+ V DE H +++ + F+ L+ R +++L+GTP QNN +EL + L+ + E L
Sbjct: 866 AVLVVDEAHRLKSNQSKFFRLLAGYNIRNKLLLTGTPLQNNLEELFHLLNFLTPEKFNDL 925
Query: 294 RTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGL 353
+ +ISK +E++K L E + P + + +++P
Sbjct: 926 TVFQNEFADISK------------------EEQVKRLHEMLGPHMLRRLKADVLKNMPSK 967
Query: 354 RHSVVILQPDEFQKRLCKAVEGVKSFVELN-----YCVSLLSV---------HPSLLPQQ 399
+V ++ QK+ K + ++F LN VSLL++ HP L P
Sbjct: 968 SEFIVRVELSPMQKKYYKYI-LTRNFEALNPRGGGQQVSLLNIMMDLKKCCNHPYLFPAA 1026
Query: 400 FFESFDVDSAKLARLKLDPEAG---IKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQL 456
E+ + L AG + ++ L IL + TN +VL+FSQ + L ++ + L
Sbjct: 1027 AQEAPTAINGSYEIGGLTRAAGKLVLLSKMLRILHD--TNHRVLIFSQMTKMLDILEDYL 1084
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
EG + +DG +RQ +I+ N P +Q + L ST+A GINL A V
Sbjct: 1085 EG-----EGYKYERIDGSITGNQRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTV 1139
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPS 576
++ D WNP + QA SRA+R+GQ V +Y +T ++E + RK+ +++V
Sbjct: 1140 IIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRP 1199
Query: 577 SDGGGNDQTTASE 589
GG T E
Sbjct: 1200 GMGGKQTNFTKQE 1212
>gi|238484253|ref|XP_002373365.1| dsDNA-dependent ATPase (Rad54b), putative [Aspergillus flavus
NRRL3357]
gi|220701415|gb|EED57753.1| dsDNA-dependent ATPase (Rad54b), putative [Aspergillus flavus
NRRL3357]
Length = 885
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 145/550 (26%), Positives = 233/550 (42%), Gaps = 89/550 (16%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+++ + G + G G I++ G GKT T+ L
Sbjct: 204 KHLRPHQREGVKFLYECVMG----------MRSFNGQGAILADDMGLGKTLQTITLLWTL 253
Query: 128 MKLHPRC-------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P + +I+ P +++ W +EF+KW G E G
Sbjct: 254 LKQNPIYENPPEVKKALIVCPVTLINNWRKEFRKW--------------LGNERIGVFVF 299
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE--LSGILLDLPGLFVF 238
D RKR L + + ++ + I+G +EKL + E G +D+ +
Sbjct: 300 DDKRKR------LTDFTRGRAYNIM--IVG-----YEKLRTVQEGLAQGAGVDI---IIA 343
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGEVLRTVR 297
DEGH + +A+ + +R+ILSGTP QN+ +E + LV G VR
Sbjct: 344 DEGHRLKTLQNKSGQAIQSLNATKRVILSGTPIQNDLKEFFAAVDLVNPGVLGNFKAFVR 403
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEK----LKELKEKIAPFVNVHKGTVLQESLPGL 353
+ I K++ A +D EK +EL+E + F+ +L LP
Sbjct: 404 EFEVPIVKSRQPE--------ATRKDIEKGEARNEELRELTSQFMLRRTADILANYLPPK 455
Query: 354 RHSVVILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSVHPSLL------- 396
++ P Q + + AV ++ ++L + L PSLL
Sbjct: 456 SEYILFCDPTPTQANIYQNVLASPVFQCAVGNSENALQLITILKKLCNSPSLLSPRNVDE 515
Query: 397 -PQQFFESFDVDSAKLARLKLDPEAGIKTRFL---LILLELSTNEKVLVFSQYIEPLTLI 452
P + + P + K R L L +L ST+EKV++ S Y L L+
Sbjct: 516 KPSETIAALLSSLPPNLLRHFSPSSSAKIRVLDQLLHILHTSTSEKVVLVSNYTSTLNLL 575
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND-PSSQARIMLASTKACCEGINLV 511
L L +DG +KRQS + N P+++ L S KA G+NL+
Sbjct: 576 ATLLTSLS-----LPFLRLDGSTPAQKRQSLVEDFNRFPTNRCFAFLLSAKAGGTGLNLI 630
Query: 512 GASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSN 571
GASR++L DV WNP + QA++R +R GQKR +Y ++ +LE +RQ K+ ++
Sbjct: 631 GASRLILFDVDWNPATDIQAMARIHRDGQKRHCRIYRILLKGSLEEKIWQRQVTKLGLAD 690
Query: 572 MVFPSSDGGG 581
V D
Sbjct: 691 SVMEHKDNAA 700
>gi|194751939|ref|XP_001958281.1| GF10842 [Drosophila ananassae]
gi|190625563|gb|EDV41087.1| GF10842 [Drosophila ananassae]
Length = 1971
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 141/539 (26%), Positives = 238/539 (44%), Gaps = 69/539 (12%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-Y 127
++ P+Q EG ++ + GID I++ G GKT T+ FL + Y
Sbjct: 714 QLHPYQIEGINWLRYSWGQGID---------------TILADEMGLGKTIQTVTFLYSLY 758
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG 187
+ H R ++ P S L+ WE EF+ W D FY + G +++ AV +
Sbjct: 759 KEGHCRGPFLVAVPLSTLVNWEREFELWAPD--FYCIT---YIGDKDSRAVIRENELSFE 813
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND 247
G + + +L + + +L SY +L+S D +D + V DE H +++
Sbjct: 814 EGAIRGSKVSRLRTTQYKFNVLLTSY----ELISMDAACLGSIDW-AVLVVDEAHRLKSN 868
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAK 307
+ F+ L+ +++L+GTP QNN +EL + L+ +S+ K
Sbjct: 869 QSKFFRILNSYAIAYKLLLTGTPLQNNLEELFHLLNF------------------LSRDK 910
Query: 308 HASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQK 367
L + G A+ +E++K L E + P + T + +++P +V ++ QK
Sbjct: 911 FNDLQAFQGEFADVSKEEQVKRLHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVELSAMQK 970
Query: 368 RLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKLAR 413
+ K + K++ LN SL+++ HP L P E+
Sbjct: 971 KFYKFI-LTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSAAEEAPTSAGGLYEI 1029
Query: 414 LKLDPEAGIKTRFLLILLEL-STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY-- 470
L AG +L +L S N +VL+FSQ + L ++ + L EG++ Y
Sbjct: 1030 NSLTKAAGKLVLLSKMLKQLKSQNHRVLIFSQMTKMLDILEDFL-------EGEQYKYER 1082
Query: 471 MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQ 530
+DG RQ +I+ N P +Q + L ST+A GINL A V++ D WNP + Q
Sbjct: 1083 IDGGITGTVRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1142
Query: 531 AISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASE 589
A SRA+R+GQ V +Y +T ++E + RK+ +++V GG T E
Sbjct: 1143 AFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGANFTKQE 1201
>gi|198466497|ref|XP_002135204.1| GA23929 [Drosophila pseudoobscura pseudoobscura]
gi|198150627|gb|EDY73831.1| GA23929 [Drosophila pseudoobscura pseudoobscura]
Length = 2036
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 141/539 (26%), Positives = 236/539 (43%), Gaps = 69/539 (12%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-Y 127
++ P+Q EG ++ + ID I++ G GKT T+ FL + Y
Sbjct: 735 QLHPYQIEGINWLRYSWGQAID---------------TILADEMGLGKTIQTVTFLYSLY 779
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG 187
+ H R ++ P S L+ WE EF+ W D FY + G +++ AV +
Sbjct: 780 KEGHCRGPFLVAVPLSTLVNWEREFELWAPD--FYCIT---YIGDKDSRAVIRENELSFE 834
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND 247
G + + +L + + +L SY +L+S D +D + V DE H +++
Sbjct: 835 EGAIRGSKVSRLRTTQYKFNVLLTSY----ELISMDAACLGSIDW-AVLVVDEAHRLKSN 889
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAK 307
+ F+ L+ +++L+GTP QNN +EL + L+ +S+ K
Sbjct: 890 QSKFFRILNSYSIAYKLLLTGTPLQNNLEELFHLLNF------------------LSRDK 931
Query: 308 HASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQK 367
L + G A+ +E++K L E + P + T + +++P +V ++ QK
Sbjct: 932 FNDLQAFQGEFADVSKEEQVKRLHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVELSAMQK 991
Query: 368 R-----LCKAVEGVKSFVELNYCVSLLSV---------HPSLLPQQFFESFDVDSAKLAR 413
+ L K E + S C SL+++ HP L P E+
Sbjct: 992 KFYKFILTKNYEALNSKTGGGSC-SLINIMMDLKKCCNHPYLFPSAAEEAQTAAGGLYEI 1050
Query: 414 LKLDPEAGIKTRFLLILLEL-STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY-- 470
L AG +L +L S N +VL+FSQ + L ++ + L EG++ Y
Sbjct: 1051 NSLTKAAGKLVLLSKMLRQLKSQNHRVLIFSQMTKMLDILEDFL-------EGEQYKYER 1103
Query: 471 MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQ 530
+DG RQ +I+ N P +Q + L ST+A GINL A V++ D WNP + Q
Sbjct: 1104 IDGGITGTVRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1163
Query: 531 AISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASE 589
A SRA+R+GQ V +Y +T ++E + RK+ +++V GG T E
Sbjct: 1164 AFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGANFTKQE 1222
>gi|255578943|ref|XP_002530324.1| ATP-dependent helicase, putative [Ricinus communis]
gi|223530128|gb|EEF32040.1| ATP-dependent helicase, putative [Ricinus communis]
Length = 1157
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 132/481 (27%), Positives = 217/481 (45%), Gaps = 84/481 (17%)
Query: 67 RKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA 126
+K+M PHQ EGF F+ N+ G GCI++HAPG+GKT + + F+Q+
Sbjct: 686 KKEMKPHQVEGFNFLCSNLVGD-------------NPGGCILAHAPGSGKTFMIITFIQS 732
Query: 127 YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID-IP---FYNLNKPELSGKENNGAVALMD 182
++ +P RP+++ P+ +L TW++EF+KW ++ IP FY L S + +D
Sbjct: 733 FLAKYPNARPMVVLPKGILATWKKEFEKWQVENIPLHDFYTLKAENRSQQ--------LD 784
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
KR W IL L Y+ +LS I V D
Sbjct: 785 VLKR---------------WVKERSILFLGYK---------QLSTI--------VCDSSK 812
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEV-LRTVRKSGR 301
+ K R R F+ F +L+ + ++ + G V + VRK
Sbjct: 813 VAAECQDILLKVTLREMRRLMYFNPSQKFKPLFLKLKASRMIINRIMGRVQISRVRK--- 869
Query: 302 EISKAKHASLISSIGRCANHRDDEK-----LKELKEKIAPFVNVHKGTVLQESLPGLRHS 356
+ ++ S+ +D K +++L++ + ++ +KG L + PGL
Sbjct: 870 HLKHGGDSAFFDSVEYTLQKDEDFKRKKAVIQDLRQMTSKVLHYYKGDFLDQ-FPGLVDF 928
Query: 357 VVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSL--LPQQFFES----FDVDSAK 410
V+L QK + + + F ++ S + +HP L Q F + ++D
Sbjct: 929 TVVLNLSARQKDEVQKLRKLDKFKRISLG-SAVYMHPRLKDFSQVCFATREKGSNIDDRT 987
Query: 411 LARL--KLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQLRHRFN-WREG 465
+ L LD G+KT+F L +L L S EK+LVFSQYI PL L +E+L + W G
Sbjct: 988 IDALLGNLDVREGVKTKFFLNILRLCESAGEKLLVFSQYILPLKL-LERLSAKVKGWSLG 1046
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINL---VGASRVVLLDVV 522
+E+ + G + ++R+ + ND S A++ S KAC EGI+L + SR L+ +
Sbjct: 1047 KELFMITGDSNTEQREICMEHFND-SPSAKVFFGSIKACGEGISLEDYLTCSRKELISKM 1105
Query: 523 W 523
W
Sbjct: 1106 W 1106
>gi|322707220|gb|EFY98799.1| chromatin-remodeling complex ATPase chain isw-1 [Metarhizium
anisopliae ARSEF 23]
Length = 1679
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 143/553 (25%), Positives = 235/553 (42%), Gaps = 118/553 (21%)
Query: 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP 132
HQ +G F+W I +L + GC++SH+ G GKT + L A +
Sbjct: 794 HQIDGVRFMWNQIIQDPELRQ-----------GCLLSHSMGLGKTMQVITLLVAIQESSK 842
Query: 133 ---------------RCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLN--KPELSGKENN 175
+ + ++ P ++ W +E W D +L+ LS +E
Sbjct: 843 SSDKSIVSQIPEDLRQSKTLVTCPAGLVNNWVDEILIWDNDRVLGDLHVIDSTLSIEE-- 900
Query: 176 GAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG-----ILL 230
R + W G+L + Y + ++ DEL +
Sbjct: 901 -------------------RLTAVQEWSQTGGVLVIGYPMLRRV--SDELDKERSLLSIF 939
Query: 231 DLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF- 289
D P + + DE H +N + + SR + RI ++G+P NN +E ++ V F
Sbjct: 940 DEPNIVIADEAHALKNPKSRLNLVCSRFRATSRIAMTGSPLANNIEEYYFMINWVAPNFL 999
Query: 290 GEVLRTVRKSGREI--SKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTV-- 345
G V + REI + H + S G + +KL+ LK+ +AP VH+ TV
Sbjct: 1000 GPV-----EEFREIYSNPISHGVDLGSSG-VDKRKALKKLEALKQIVAP--KVHRATVNT 1051
Query: 346 -LQESLPGLRHSVVILQPDEFQKRLC---------KAVEGVKSFVELNYCV-------SL 388
+Q+ LP + V+ ++P Q +L ++V ++ EL V +L
Sbjct: 1052 CMQKDLPSKQEFVICVKPKPLQVKLYNLFAQIIRGESVGYIQGEAELKGAVFRVTNDLTL 1111
Query: 389 LSVHPSLLPQQFFESFDVDS------------------AKLARLKLD-PEAGIKTRFLLI 429
L HP ++ E+ D A+ AR++ P K L+
Sbjct: 1112 LCNHPYAFYEKAIETQDPPKAESKQKAGLPPGIIPAVLAEFARIETRCPSLSTKVELLIQ 1171
Query: 430 LLELS--TNEKVLVFSQYIEPLTLI--MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSIN 485
+L+ + + +KVLVFS I L + + Q + R R +DGK + KRQ I
Sbjct: 1172 ILDDAKRSKDKVLVFSHSIPTLNYLSGLFQEQKRLFSR-------LDGKTPIAKRQEEIK 1224
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
N ++ + L ST+A G+N+ GA++VV+LD WNP E+QAI R+YR+GQ + V
Sbjct: 1225 KFN--ANHTEVYLISTRAGGVGLNIQGANKVVILDSKWNPVHEQQAIGRSYRIGQSKPVS 1282
Query: 546 VYHLITSETLEWD 558
VY+ +T+ T E D
Sbjct: 1283 VYYFVTAGTFEQD 1295
>gi|294658308|ref|XP_002770756.1| DEHA2F06446p [Debaryomyces hansenii CBS767]
gi|202953033|emb|CAR66284.1| DEHA2F06446p [Debaryomyces hansenii CBS767]
Length = 884
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 149/571 (26%), Positives = 263/571 (46%), Gaps = 82/571 (14%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMK-- 129
PHQRE F+++ + G KN GNG +++ G GKT T+ + +K
Sbjct: 255 PHQREAVSFVYECLMG------FKN----FKGNGALLADEMGLGKTLTTITLIWTLLKQT 304
Query: 130 -----LHPRCRPVII-APRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDN 183
+ P C+ V+I P +++ W++EFKKW N+N+ G + + +
Sbjct: 305 PYSEDISPICKKVLITCPVTLIGNWKKEFKKW------LNINRI--------GVLTVNNK 350
Query: 184 RKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG-DELSGILLDLPGLFVFDEGH 242
+ + K + + K ++ +L +SY EK++S +ELS I D+ V DEGH
Sbjct: 351 QNASKDKQEIKSFGKTRIYQ----VLIMSY---EKVLSCQNELSTIDFDM---LVCDEGH 400
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + K L+ + ++++L+GTP QN+ E N ++ + ++ +K
Sbjct: 401 RLKNSSNKVLKVLNDMNISKKVLLTGTPIQNDLVEFYNIINFINPSVLGSFQSFQKDF-- 458
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQP 362
I + ++ I + R + K EL E F ++L L ++ P
Sbjct: 459 IKPILRSREVNCINKDTIKRGEIKSNELIELTKEFTLRRTSSILSGYLTEKTDIILFCPP 518
Query: 363 DEFQKRLCKAVEGVKSFVEL----NYCVSLLSV------HPSLLPQ-QFFESF------- 404
E Q L K V K F L N ++L+++ PSLL Q + F S
Sbjct: 519 TELQIALFKFVLDSKKFNALLREDNNSLTLITLFKKICNSPSLLFQDKLFNSLIENEHDS 578
Query: 405 DVDSAKLARLKLDPEAGIKTRFLLILLELS-TNEKVLVFSQYIEPLTLIMEQLRHRFNWR 463
+D L++ + I + +L+E++ +K ++ S Y + L L +E + H+ N
Sbjct: 579 TIDLTTLSKKTASSKVNI---LIPLLIEINQIGDKTVLISNYTQTLDL-LETILHKLNIS 634
Query: 464 EGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGINLVGASRVVLLDVV 522
+ +DG K R +N N P S + L S K+ G+NL+GASR++L D
Sbjct: 635 FSR----LDGSTPNKLRDKLVNDFNKQPVSTNSVFLLSAKSGGVGLNLIGASRLILFDND 690
Query: 523 WNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGN 582
WNP ++ QA++R +R GQ + V +Y ++T+ ++ +RQ K +N+ SD +
Sbjct: 691 WNPSIDLQAMARIHRDGQTKPVFIYRIMTTGCIDEKIFQRQMMK---NNL----SDKFLD 743
Query: 583 DQTTASEPLEDKILEEMAQLYNNPSETLINA 613
++T + L D + ++ L+ ETL N
Sbjct: 744 NKTDSKSNLFD--MNDLKDLFTVNEETLSNT 772
>gi|432106413|gb|ELK32206.1| DNA repair and recombination protein RAD54B [Myotis davidii]
Length = 817
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 148/548 (27%), Positives = 231/548 (42%), Gaps = 99/548 (18%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ+EG F+++ + G G G I++ G GKT + L
Sbjct: 204 PHQKEGLIFLYECVMG----------MRVNGRCGAILADEMGLGKTLQCISLLWTLQCQG 253
Query: 132 PRC------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRK 185
P + +I+ P S++ W EF+KW G E + + K
Sbjct: 254 PYGGKPIIKKTLIVTPGSLVNNWRREFQKW--------------LGSERIKIFTVDQDHK 299
Query: 186 RGRGKVGLIRYVK--LYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHT 243
+ ++K LYS +L +SY + L S D++ I DL + DEGH
Sbjct: 300 -------VEEFIKSPLYS------VLIISYEML--LRSLDQIKNIKFDL---LICDEGHR 341
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQE-----------LENTLSLVRQEFGEV 292
+N AL + +RIIL+GTP QN+ QE + +LS R+ + E
Sbjct: 342 LKNSAIKTTTALISLACEKRIILTGTPVQNDLQEFFALIDFVNPGILGSLSSFRKIYEEP 401
Query: 293 LRTVR-----KSGREISKAKHASLISSIGRCANHRDDEKL-KELKEKIAPFVNVHKGTV- 345
+ R K +E+ + + A L+ G R E + K L KI V G +
Sbjct: 402 IIVSRQPSASKEDKELGERRAAELVCFTGLFFLRRTQEVINKYLPPKIENVVFCRPGALQ 461
Query: 346 ----------------LQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLL 389
LQ SL H + I K+LC + + ++ C S
Sbjct: 462 LELYQKLLNSQAVRFCLQGSLENSPHLICI----GALKKLCNHPCLLFNSIKEKECSSTW 517
Query: 390 SVHP-SLLPQQFFESFDVDSAKLARLKLDPEAG---IKTRFLLILLELSTNEKVLVFSQY 445
H S L + F D L + + E+G + T+ L ++ EL ++V++ S Y
Sbjct: 518 DEHEESSLYEGLLNVFPADYNPL--MFTEKESGKLQVLTKLLAVIHELRPTDRVVLVSNY 575
Query: 446 IEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACC 505
+ L ++ E + R G +DG+ V +RQ ++ N S I L S+KA
Sbjct: 576 TQTLNILQEVCK-----RHGYACTRLDGQTPVSQRQQIVDGFNSKYSSDFIFLLSSKAGG 630
Query: 506 EGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQAR 565
G+NL+G S ++L D+ WNP + QA+SR +R GQK VH+Y L+T+ T+E +RQ
Sbjct: 631 VGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQIS 690
Query: 566 KVWWSNMV 573
K S V
Sbjct: 691 KQGLSGAV 698
>gi|363749975|ref|XP_003645205.1| hypothetical protein Ecym_2678 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888838|gb|AET38388.1| Hypothetical protein Ecym_2678 [Eremothecium cymbalariae
DBVPG#7215]
Length = 919
Score = 141 bits (355), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 149/576 (25%), Positives = 247/576 (42%), Gaps = 86/576 (14%)
Query: 66 VRKKMFPHQREGFEFIWKNIAG-----GIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
+ K + PHQR G +F++ I G D+ + G GC+++ G GKT +T
Sbjct: 263 LSKTLRPHQRIGVKFMYDCIRGLSRPENDDVQKDITLEYDGDIKGCLLADEMGLGKTYMT 322
Query: 121 LVFLQAYMKLHPR----------------CRPV-IIAPRSMLLTWEEEFKKWGIDIPFYN 163
+ + +K HP+ C + ++ P +++ W++EF KW +P
Sbjct: 323 ITLIWTLLKQHPKPSNVPCSQSGVALQGMCHKILVVCPVTLIGNWKKEFTKW---LPLNK 379
Query: 164 LNKPELSGKENNGAVALMDNRKRGRGKV-GLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222
+ LS K + ++ + V +R + Y +L L Y +VS
Sbjct: 380 IGVLTLSNK---------NTPEKDKSDVRNFLRVQRTYH------VLILGYEKLLAVVSE 424
Query: 223 DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
E L GL V DEGH +N ++ + K L+ + R++IL+GTP QN+ E +
Sbjct: 425 LEQGKNKL---GLLVCDEGHRLKNANSKILKCLTDLDIDRKVILTGTPIQNDLNEFYTII 481
Query: 283 SLVRQE-FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE-KIAPFVNV 340
+ + G R I++A R N+R EK++ L E K + +
Sbjct: 482 NFINPGILGSFSCFKRTYINPITRA----------RDVNNRFSEKIQSLGESKSQDLIEI 531
Query: 341 HK-------GTVLQESLPGLRHSVVILQPDEFQKRLCKAV--EGVKSFVELNYCVSL--- 388
K +++ LP V+ +P Q K + G F L SL
Sbjct: 532 TKRFTLRRTSSIIANYLPPKTDLVIFCKPTVHQIETFKMLLLAGQIDFQRLQTSSSLGLI 591
Query: 389 -----LSVHPSLLPQQ-FFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTN----EK 438
+ PSL+ ++++ + K A+L ++G K + L+ LL N EK
Sbjct: 592 TLFKKVCNSPSLISSDPYYQNTIQNHGKFAKLVNSIDSG-KLKVLMSLLSHIRNNTDGEK 650
Query: 439 VLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498
V++ S Y + L +I + + +DG K+R S +++ N S L
Sbjct: 651 VVIVSNYTQTLDIIQGLMAS-----SSLSFVRLDGSTPAKERDSIVSLFNS-SPNVFGFL 704
Query: 499 ASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWD 558
S K+ G+NL+GASR++L D WNP V+ QA+SR +R GQKR +Y L+T+ ++
Sbjct: 705 LSAKSGGVGLNLIGASRLILFDNDWNPSVDLQAMSRIHRDGQKRPCFIYRLVTTGCIDEK 764
Query: 559 KLRRQARKVWWSNMVFPSS-DGGGNDQTTASEPLED 593
+RQ K S + D ND E L+D
Sbjct: 765 IFQRQLMKNNLSKKFLDNHLDEKTNDNLFEKEDLKD 800
>gi|195379440|ref|XP_002048487.1| GJ13998 [Drosophila virilis]
gi|194155645|gb|EDW70829.1| GJ13998 [Drosophila virilis]
Length = 2012
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 142/550 (25%), Positives = 236/550 (42%), Gaps = 83/550 (15%)
Query: 65 DVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFL 124
D ++ P+Q EG ++ + ID I++ G GKT T+ FL
Sbjct: 723 DTGMQLHPYQIEGINWLRYSWGQSID---------------TILADEMGLGKTIQTVTFL 767
Query: 125 QA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDN 183
+ Y + H R ++ P S L+ WE EF+ W D FY + G +++ AV +
Sbjct: 768 YSLYKEGHCRGPFLVAVPLSTLVNWEREFELWAPD--FYCIT---YIGDKDSRAVIRENE 822
Query: 184 RKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGL-------F 236
G + + +L + + +L SY L I +D P L
Sbjct: 823 LTFDEGAIRGTKVSRLRTTQYKFNVLLTSYEL------------ISMDAPCLGSIDWAVL 870
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTV 296
V DE H +++ + F+ L+ +++L+GTP QNN +EL + L+
Sbjct: 871 VVDEAHRLKSNQSKFFRILNSYAIAYKLLLTGTPLQNNLEELFHLLNF------------ 918
Query: 297 RKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHS 356
+S+ K L + G A+ +E++K L E + P + T + +++P
Sbjct: 919 ------LSRDKFNDLQAFQGEFADVSKEEQVKRLHEMLGPHMLRRLKTDVLKNMPSKSEF 972
Query: 357 VVILQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFE 402
+V ++ QK+ K + K++ LN SL+++ HP L P E
Sbjct: 973 IVRVELSAMQKKFYKFI-LTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSAAEE 1031
Query: 403 SFDVDSAKLARLKLDPEAGIKTRFLLILLEL-STNEKVLVFSQYIEPLTLIMEQLRHRFN 461
+ L AG +L +L S N +VL+FSQ + L ++ + L
Sbjct: 1032 APTSAGGIYEINSLTKAAGKLVLLSKMLKQLKSQNHRVLIFSQMTKMLDILEDFL----- 1086
Query: 462 WREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
EG++ Y +DG RQ +I+ N P +Q + L ST+A GINL A V++
Sbjct: 1087 --EGEQYKYERIDGSITGTVRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIY 1144
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDG 579
D WNP + QA SRA+R+GQ V +Y +T ++E + RK+ +++V G
Sbjct: 1145 DSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMG 1204
Query: 580 GGNDQTTASE 589
G T E
Sbjct: 1205 GKGANFTKQE 1214
>gi|71033369|ref|XP_766326.1| DNA repair protein Rad54 [Theileria parva strain Muguga]
gi|68353283|gb|EAN34043.1| DNA repair protein rad54, putative [Theileria parva]
Length = 786
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 146/541 (26%), Positives = 237/541 (43%), Gaps = 102/541 (18%)
Query: 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP 132
HQR+G +FI+ + G LK G GCI++ G GKT ++ + +
Sbjct: 140 HQRQGVQFIFDCLMG------LKG----FNGRGCILADDMGLGKTLQSITVMWTLLNQGL 189
Query: 133 RCRP---------------VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGA 177
+P II P S++ WE E KKW L G+
Sbjct: 190 DNKPGKALNYSSSTAARKCAIICPASLVNNWESEIKKW-------------LRGRCPCTP 236
Query: 178 VALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFV 237
VA K +I + + + + ++ SY + S L G+ +DL +
Sbjct: 237 VA-------ESSKEKVISSFQGFKYDRTSRVIISSYETYRLHCS--YLEGVNIDL---LI 284
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DE H +ND T +++S + R++LSGTP QN+ E + +SL + VL V
Sbjct: 285 CDEAHRLKNDKTRTSQSISNSSAKMRLMLSGTPIQNDLNEFYSLVSLCNPD---VLGDVN 341
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP---FVNVHKGTV-----LQES 349
R + ++ + +S+I N + L K+ P +NV + +S
Sbjct: 342 SFRRNFAASERLAELSNI---TNQFVLRRTNALLAKVLPPKIILNVFCNLTDVQKDIYKS 398
Query: 350 LPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSA 409
R I+ D R A+ ++S ++L HP LL ++ S DVDS
Sbjct: 399 FVTSRRWKNIMNQDTVVSR---ALSAIQSLMKL-------CNHPFLL-KRGGSSPDVDS- 446
Query: 410 KLARLKLDPEAGIKT------------RFLLIL-----LELSTNEKVLVFSQYIEPLTLI 452
L LD E K+ +FL++ + N++V++ S Y + L L
Sbjct: 447 ----LLLDIENATKSSKYKCCRCDLSGKFLVLYRLLYQIRRHGNDRVVIISNYTQTLDL- 501
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
E+L N+ + +DG +KKR + NDP+S + I L S+KA GINL+G
Sbjct: 502 FERLCKECNYPFER----LDGTTSIKKRHKLVTTFNDPNSNSFIFLLSSKAGGCGINLIG 557
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNM 572
A+R+VL D WNP ++QA++R +R GQ +V ++Y ++ T+E +RQ K S+M
Sbjct: 558 ANRLVLFDPDWNPANDKQALARVWRDGQTKVCYIYRFFSTGTIEEKIYQRQICKDGLSSM 617
Query: 573 V 573
+
Sbjct: 618 L 618
>gi|301788109|ref|XP_002929471.1| PREDICTED: DNA repair and recombination protein RAD54B-like
[Ailuropoda melanoleuca]
Length = 911
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 156/584 (26%), Positives = 237/584 (40%), Gaps = 120/584 (20%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ+EG F+++ + G G G I++ G GKT + +
Sbjct: 299 PHQKEGIIFLYECVMG----------MRVNGRCGAILADEMGLGKTLQCISLIWTLQCQG 348
Query: 132 PRC-RPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRK 185
P +PVI + P S++ W +EF+KW G E + + K
Sbjct: 349 PYGGKPVIKKTLIVTPGSLVNNWRKEFQKW--------------LGSERIKIFPVDQDHK 394
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPR 245
V+ ++ +L +SY + L S D++ + DL + DEGH +
Sbjct: 395 -----------VEEFTKSPFYSVLIISYEML--LRSLDQVKNVKFDL---LICDEGHRLK 438
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE--- 302
N AL + +RIIL+GTP QN+ QE + V L + RK E
Sbjct: 439 NSAIKTTTALISLSCEKRIILTGTPVQNDLQEFFALIDFVNPGILSSLSSYRKIYEEPII 498
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG--------TVLQESLPGLR 354
IS+ AS E+ KEL EK A + G V+ + LP
Sbjct: 499 ISRQPSAS--------------EEEKELGEKRAAELTCLTGLFILRRTQEVINKYLPPKI 544
Query: 355 HSVVILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSV---HPSLL----- 396
+VV +P Q L + ++G+ C+ L HP LL
Sbjct: 545 ENVVFCRPGALQIELYRKLLNSQAVRFCLQGLLGNSPHLICIGALKKLCNHPCLLFNSIK 604
Query: 397 ------------PQQFFESF-DVDSAKLARLKLDPEAGIKTRFLLILL----ELSTNEKV 439
+ +E DV A L E K + L+ LL EL EKV
Sbjct: 605 EKEYSSTWDGNEERSLYEGLVDVFPADYNPLMFMEEESGKLQVLMKLLAVIHELRPTEKV 664
Query: 440 LVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
++ S Y + L ++ E + R G +DG+ + +RQ ++ N S I L
Sbjct: 665 VLVSNYTQTLNILQEVCK-----RHGYTYTRLDGQTPISQRQQIVDGFNSKYSSDFIFLL 719
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
S+KA G+NL+G S ++L D+ WNP + QA+SR +R GQK VH+Y L+T+ T+E
Sbjct: 720 SSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKI 779
Query: 560 LRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLY 603
+RQ K S V D T SE ++ + EE+ L+
Sbjct: 780 YQRQISKQDLSGAVV--------DLTKTSEHIQFSV-EELKNLF 814
>gi|322701620|gb|EFY93369.1| SNF2 family helicase/ATPase [Metarhizium acridum CQMa 102]
Length = 1677
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 144/550 (26%), Positives = 239/550 (43%), Gaps = 112/550 (20%)
Query: 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFL-------- 124
HQ G F+W I +L + GC++SH+ G GKT + L
Sbjct: 795 HQINGVRFMWNQIIQDPELRQ-----------GCLLSHSMGLGKTMQVITLLVAIQESSK 843
Query: 125 ---QAYMKLHP----RCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGA 177
Q+ + P R + ++ P ++ W +E W D +L+
Sbjct: 844 SSDQSIVSQIPEDLRRSKTLVTCPAGLVNNWVDEILTWDTDRILGDLH------------ 891
Query: 178 VALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEK----LVSGDELSGILLDLP 233
++D+ ++ +++ W G+L + Y + K L G + I D P
Sbjct: 892 --VIDSTLSIEDRLSVVQ-----EWSQTGGVLVIGYPMLRKVSLELDKGRSMLSIF-DEP 943
Query: 234 GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEV 292
+ + DE HT +N + + SR + RI ++G+P NN +E ++ V F G V
Sbjct: 944 NIVIADEAHTLKNPKSKLHLVCSRFRATSRIAMTGSPLANNIEEYYFMINWVAPNFLGPV 1003
Query: 293 LRTVRKSGREI--SKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTV---LQ 347
+ REI + +H S G + +KL+ LK+ ++P VH+ T+ +Q
Sbjct: 1004 -----EEFREIYSNPIQHGVDKGSSG-VDKRKALKKLEALKQIVSP--KVHRATMKTCMQ 1055
Query: 348 ESLPGLRHSVVILQPDEFQKRLC---------KAVEGVKSFVELNYCV-------SLLSV 391
+ LP + V+ ++P Q +L ++V ++ EL V +LL
Sbjct: 1056 KDLPPKQEFVLCVKPKPLQVKLYNLFAQVIRGESVGDIQGEAELQGAVFRVTNDLTLLCN 1115
Query: 392 HPSLLPQQFFESFDVDSAKL-ARLKLDPE---------AGIKTR---------FLLILLE 432
HP ++ ES D K R P AG++ R L+ +L+
Sbjct: 1116 HPYAFYEKAIESQDSHKTKSKPRAGFPPSIIPAVLAEFAGVEARCPSLSTKIELLIQILD 1175
Query: 433 LS--TNEKVLVFSQYIEPLTLIME--QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN 488
+ + +KVLVFS I L + + Q + R R +DG + KRQ I N
Sbjct: 1176 DAKRSKDKVLVFSHSIPTLNYLSKLFQEQKRCFSR-------LDGGTPIAKRQDEIKKFN 1228
Query: 489 DPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYH 548
++Q + L ST+A G+N+ GA++VV+LD WNP E+QAI R+YR+GQ + V VY+
Sbjct: 1229 --ANQTELYLISTRAGGVGLNIQGANKVVILDSKWNPVHEQQAIGRSYRIGQSKPVSVYY 1286
Query: 549 LITSETLEWD 558
+T+ T E D
Sbjct: 1287 FVTAGTFEQD 1296
>gi|440295421|gb|ELP88334.1| DNA repair and recombination protein RDH54, putative [Entamoeba
invadens IP1]
Length = 766
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 144/536 (26%), Positives = 239/536 (44%), Gaps = 104/536 (19%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ EG +F++ N G +GCI++ G GKT T+ +
Sbjct: 201 KHLRPHQVEGIKFMY-------------NCVMRGDDSGCILADEMGLGKTLQTIALIWTL 247
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKW-GID-IPFYN-----LNKPELSGKENNGAVAL 180
K + V++ P+S++ WE EF KW G + IP L K ++ N+ L
Sbjct: 248 YKQCNVKKTVVVCPQSLIGNWENEFMKWLGTERIPVKTGSSDALMKQKVEDFINDYIPVL 307
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
+ + ++ R V ++ K+ GL + DE
Sbjct: 308 ITSYEQVRSHVETLKKTKI----------------------------------GLLICDE 333
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF---GEV--LRT 295
GH +N T +L + R IILSGTP QN LE+ SLV EF G + LRT
Sbjct: 334 GHRIKNLMTKTNTSLQNLGASRHIILSGTPVQNG---LEDFYSLV--EFCCPGSLGPLRT 388
Query: 296 VRKS-GREISKAKHASLI---SSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLP 351
++ I +A+ +G+ E+ KEL K+ +V + ++ LP
Sbjct: 389 FKRVFATPIQRAQDGDATLEEIELGK-------ERAKELTVKLNDYVLRRTSKINEKYLP 441
Query: 352 GLRHSVVILQPDEFQKRLCKAV-----------EGVKSFVELNYCVSLLSVHPSLLPQQF 400
VV ++P QK++ + F++L + L HP L+
Sbjct: 442 DKTEIVVFVKPSIVQKKIYAMMLNDLKMKRVDQSAALQFIQL---FTKLCNHPLLVRDYL 498
Query: 401 FESF-DVD-------SAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLI 452
E++ DVD + ++A L+ + + +F+ + ++ EKV+V S Y + L +
Sbjct: 499 VENYKDVDKEILDILNQEVANLEGSNKFNVTVKFIE-EIIENSEEKVVVVSNYTKTLDV- 556
Query: 453 MEQLRHRFNWREGQEV--LYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINL 510
F+ RE ++ L +DGK K R + + +ND S ++L S+KA G+NL
Sbjct: 557 ---FEKYFSTREESKIKILRLDGKTSQKSRDTIVEKINDKKSGYNVLLLSSKAGGVGLNL 613
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+G SR++L D WNP ++QA++R +R GQKR +Y ++ + T+E +RQ +K
Sbjct: 614 IGCSRLILFDPDWNPAKDKQAMARIWRDGQKRKAMIYRMLCTGTIEEKIYQRQLQK 669
>gi|224013540|ref|XP_002296434.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220968786|gb|EED87130.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 1089
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 144/578 (24%), Positives = 252/578 (43%), Gaps = 90/578 (15%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELK--------NSTSTGGG---------- 103
VP + + PHQREG F+W N G++ EL N+ S GG
Sbjct: 341 VPASISTVLRPHQREGIAFLW-NCVTGVN-GELNRAMERSWMNNNSKGGTMDGDSEDSDE 398
Query: 104 ------------NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEE 151
G +++ G GKT +T+ + A+ + R +++ P S++ W +E
Sbjct: 399 DVGKKGGGVVVPRGAVLADEMGLGKTLMTIATIYAFHRRQRDRRFIVVCPSSLVSNWAKE 458
Query: 152 FKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGL 211
F KW ++P+ +N G L + R +V + IL
Sbjct: 459 FDKW-----LGKASQPKRVIAKNGGEEGLRNLRS----------FVPPKPQQAEVLILSY 503
Query: 212 S-YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND-DTCMFKALSRIKTRRRIILSGT 269
+RL K++S GIL V DEGH +N + AL+ + RI+++GT
Sbjct: 504 ELFRLHAKIISKATRIGIL-------VVDEGHRLKNTAGSQTLSALNSVDAEARILITGT 556
Query: 270 PFQNNFQELENTLSLVRQE-FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLK 328
P QNN E N + GE+ R R +S+A + + N + E+ K
Sbjct: 557 PIQNNLSEFYNVANFALPGILGELSDFRRLYERPMSQANQ----KNSSKTQNEKGREQSK 612
Query: 329 ELKEKIAPFV-NVHKGTVLQESLPGLRHSVVILQPDEFQ--------KRLCKAVEGVKSF 379
+L + FV + VL+ LP ++ +P E Q R +++ ++
Sbjct: 613 KLDAITSTFVIRRLQKDVLKSLLPPRTELLLFCRPTERQCELYREISNRASRSIGSIRGR 672
Query: 380 VELNYCVSLLS------VHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL 433
+ + ++LL+ HPSLL + D A L+ + + + + + E
Sbjct: 673 DDNDTPLTLLTEVRKLCTHPSLLNKDDSSLSASDDASLSGKLI-----VLSSLIESIREH 727
Query: 434 STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQ 493
+KV++ S + LT++ + + N + +DG D RQ ++ N+ S
Sbjct: 728 HPTDKVIITSNFTTALTVVENSILRKKNL----PFIRLDGSVDNASRQPIVDSFNNNSVN 783
Query: 494 ARIMLA-STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
S+KA G+NL+GA+R++++D WNP ++Q ++R YR GQK+ ++Y + T+
Sbjct: 784 HSFAFTLSSKAGGCGLNLIGANRLIMVDADWNPATDQQVMARVYRQGQKKPCYIYRMFTT 843
Query: 553 ETLEWDKLRRQARKVWWSNMVFPSSDGGG-NDQTTASE 589
T+E +RQ +K N+ ++DGG N+ TA++
Sbjct: 844 GTVEEVIFQRQTQK---GNLAKLANDGGSRNEGKTAAK 878
>gi|289434930|ref|YP_003464802.1| Snf2 family helicase [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289171174|emb|CBH27716.1| helicase, Snf2 family [Listeria seeligeri serovar 1/2b str. SLCC3954]
Length = 1071
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 138/468 (29%), Positives = 205/468 (43%), Gaps = 73/468 (15%)
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYN 163
G I++ G GKT T+ FL + ++ P +PV I+ P S+L W+ E +K+ DIP
Sbjct: 636 GGILADDMGLGKTVQTISFLASELEEKPDLKPVLIVTPASLLYNWQSELEKFAPDIPVTV 695
Query: 164 LNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD 223
L+ G + + V + D + RG V LI Y L IL L+ F ++
Sbjct: 696 LH-----GTKESRLVEMEDMK---RGHVYLISYPSLRQ-----DILNLADVNFSSVI--- 739
Query: 224 ELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS 283
DE +N T +A+ +K LSGTP +N+ EL
Sbjct: 740 --------------IDESQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIYQ 785
Query: 284 LVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
+ F LR + EI K A++I + +KEL +KI
Sbjct: 786 TLMPGFFPSLRKFK----EIPYDKIATMIRPF--LLRRLKQDVVKELPDKIE-------- 831
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQ 398
T L L + ++ + ++ Q L ++ G S + L + PSL
Sbjct: 832 TNLYSELTDEQKTIYLAYLEKIQADLAES-NGNASEERIKLLAGLTRLRQICCDPSL--- 887
Query: 399 QFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRH 458
F E++ +S KL +L F I +++L+FSQ+ L +I +L
Sbjct: 888 -FVENYQGESGKLLQL-----------FDTIQTARENGKRLLIFSQFTGMLAIIRRKLEE 935
Query: 459 RFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVL 518
+GQ YMDGK K R +N N+ + I L S KA G+NLVGA V+L
Sbjct: 936 -----DGQTFFYMDGKTPAKTRLDMVNSFNE--GENDIFLISLKAGGTGLNLVGADTVIL 988
Query: 519 LDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
D+ WNP VE QA RA+R+GQKRVV V+ +IT T+E Q +K
Sbjct: 989 YDLWWNPAVEEQATGRAHRIGQKRVVQVFRMITKGTIEERIFELQKKK 1036
>gi|145522682|ref|XP_001447185.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124414685|emb|CAK79788.1| unnamed protein product [Paramecium tetraurelia]
Length = 1508
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 140/504 (27%), Positives = 230/504 (45%), Gaps = 82/504 (16%)
Query: 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLN 165
I++ G GKT T+ FL P +IIAP S L W+ ++W NLN
Sbjct: 429 ILADEMGLGKTIQTISFLNHLYNFENYRGPFLIIAPLSTLQHWKRTVEEWT------NLN 482
Query: 166 KPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL--FEKLVSGD 223
AV D G+ +Y Y+ GI+ + + F+ L++
Sbjct: 483 -----------AVLYYDQESTA-GRTQCRQYEFFYTDISMKGIVLQASEIYKFQILITSY 530
Query: 224 EL-----SGILLDLPGLF-VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQE 277
E+ I +++P + V DE H +N + + ++L ++ +R ++L+GTP QNN +E
Sbjct: 531 EVFMQDFQTIFINIPFQYIVVDEAHKLKNSNARILQSLKKLCCQRTLLLTGTPIQNNTEE 590
Query: 278 LENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPF 337
L + L+ + S + S G+ EKL L + PF
Sbjct: 591 LFSLLNFIE---------------PYSFSNLTSFKREYGQLETSDQVEKLNVL---LKPF 632
Query: 338 VNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV-EGVKSFVELNY------CVSLLS 390
+ + +++ +P L+ +++ ++ QK + KA+ E KS +E + SL +
Sbjct: 633 ILRRQKEDVEQMIPPLQETIIDIEMTTIQKHIYKALYERNKSMLEQGFSQWAANAASLNN 692
Query: 391 V---------HPSLLPQQFFESFDVDSAKLARLKLD-----PEAGIKTRFLLILLELSTN 436
+ HP L+ + D K + K D E+ K L LL N
Sbjct: 693 LEIQLRKCCNHPYLI-----QEMQNDLTKECQNKNDYINKLVESSGKMILLDKLLNKFRN 747
Query: 437 E--KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSS 492
E K+L+FSQ+ L+++ E L+ R +V Y +DG+ ++RQ++I+ NDPS
Sbjct: 748 EGKKMLIFSQFTMMLSILEEYLKFR-------QVKYEKIDGQIKARERQNAIDRFNDPSK 800
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
+ + L STKA +GINL A VV+ D WNP + QA +RA+R+GQ + V VY LIT
Sbjct: 801 KREVFLLSTKAGGQGINLTAAEIVVIYDSDWNPQNDVQATARAHRIGQSKEVTVYRLITK 860
Query: 553 ETLEWDKLRRQARKVWWSNMVFPS 576
+T E + R +K+ +F S
Sbjct: 861 DTYEAEMFERAIKKLGLDQAIFMS 884
>gi|350638705|gb|EHA27061.1| hypothetical protein ASPNIDRAFT_119444 [Aspergillus niger ATCC
1015]
Length = 967
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 148/551 (26%), Positives = 227/551 (41%), Gaps = 97/551 (17%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+++ + G + G G I++ G GKT T+ L
Sbjct: 280 KHLRPHQREGVQFLYECVMGMRSFN----------GEGAILADDMGLGKTLQTITLLWTL 329
Query: 128 MKLHP--RCRPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P PV I+ P +++ W +EF+KW G E G
Sbjct: 330 LKQNPVHDSPPVVKKALIVCPVTLINNWRKEFRKW--------------LGNERIGVFVF 375
Query: 181 MDNRKR----GRGK---VGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP 233
D RKR RG+ V ++ Y KL S + G +G+
Sbjct: 376 DDKRKRLTDFTRGRAYSVMIVGYEKLRSVQEGLA----------------NSNGV----- 414
Query: 234 GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVL 293
+ V DEGH + +A+ + +RIILSGTP QN+ +E + LV VL
Sbjct: 415 DIIVADEGHRLKTLQNKSGQAIQSLNATKRIILSGTPIQNDLKEFFAAVDLVNPG---VL 471
Query: 294 RTVRKSGREISKAKHASLISSIGRCANHRDDEK----LKELKEKIAPFVNVHKGTVLQES 349
T + RE ++ S A +D EK +EL+E + F+ +L +
Sbjct: 472 GTFKSFVREF----EGPIVKSRQPEATRKDIEKGEARNEELRELTSKFMLRRTADILAKY 527
Query: 350 LPGLRHSVVILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSVHPSLL--- 396
LP V+ + Q + + A+ +S ++L + L PSLL
Sbjct: 528 LPPKTEYVLFCKATRTQATIYQNVLASPVFQSALGNSESALQLITILKKLCNSPSLLTPR 587
Query: 397 -----PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEP 448
P + + P + K R L LL+ T+EK+++ S Y
Sbjct: 588 DVNETPSETIAALLSSLPPNLLRHFTPSSSAKLRVLDQLLDGLRTKTSEKIVLVSNYTS- 646
Query: 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND-PSSQARIMLASTKACCEG 507
L L +DG +KRQS + N PS+ L S KA G
Sbjct: 647 ----TLNLLANLLTSLSLPFLRLDGSTPAQKRQSLVEDFNRLPSNLCFAFLLSAKAGGTG 702
Query: 508 INLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567
+NL+GASR+VL DV WNP + QA++R +R GQKR +Y ++ +LE +RQ K+
Sbjct: 703 LNLIGASRLVLFDVDWNPATDIQAMARIHRDGQKRHCRIYRILLKGSLEEKIWQRQVTKI 762
Query: 568 WWSNMVFPSSD 578
++ V D
Sbjct: 763 GLADSVMEKKD 773
>gi|281347253|gb|EFB22837.1| hypothetical protein PANDA_019651 [Ailuropoda melanoleuca]
Length = 810
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 156/584 (26%), Positives = 237/584 (40%), Gaps = 120/584 (20%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ+EG F+++ + G G G I++ G GKT + +
Sbjct: 198 PHQKEGIIFLYECVMG----------MRVNGRCGAILADEMGLGKTLQCISLIWTLQCQG 247
Query: 132 PRC-RPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRK 185
P +PVI + P S++ W +EF+KW G E + + K
Sbjct: 248 PYGGKPVIKKTLIVTPGSLVNNWRKEFQKW--------------LGSERIKIFPVDQDHK 293
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPR 245
V+ ++ +L +SY + L S D++ + DL + DEGH +
Sbjct: 294 -----------VEEFTKSPFYSVLIISYEML--LRSLDQVKNVKFDL---LICDEGHRLK 337
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE--- 302
N AL + +RIIL+GTP QN+ QE + V L + RK E
Sbjct: 338 NSAIKTTTALISLSCEKRIILTGTPVQNDLQEFFALIDFVNPGILSSLSSYRKIYEEPII 397
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG--------TVLQESLPGLR 354
IS+ AS E+ KEL EK A + G V+ + LP
Sbjct: 398 ISRQPSAS--------------EEEKELGEKRAAELTCLTGLFILRRTQEVINKYLPPKI 443
Query: 355 HSVVILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSV---HPSLL----- 396
+VV +P Q L + ++G+ C+ L HP LL
Sbjct: 444 ENVVFCRPGALQIELYRKLLNSQAVRFCLQGLLGNSPHLICIGALKKLCNHPCLLFNSIK 503
Query: 397 ------------PQQFFESF-DVDSAKLARLKLDPEAGIKTRFLLILL----ELSTNEKV 439
+ +E DV A L E K + L+ LL EL EKV
Sbjct: 504 EKEYSSTWDGNEERSLYEGLVDVFPADYNPLMFMEEESGKLQVLMKLLAVIHELRPTEKV 563
Query: 440 LVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
++ S Y + L ++ E + R G +DG+ + +RQ ++ N S I L
Sbjct: 564 VLVSNYTQTLNILQEVCK-----RHGYTYTRLDGQTPISQRQQIVDGFNSKYSSDFIFLL 618
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
S+KA G+NL+G S ++L D+ WNP + QA+SR +R GQK VH+Y L+T+ T+E
Sbjct: 619 SSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKI 678
Query: 560 LRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLY 603
+RQ K S V D T SE ++ + EE+ L+
Sbjct: 679 YQRQISKQDLSGAVV--------DLTKTSEHIQFSV-EELKNLF 713
>gi|195591505|ref|XP_002085481.1| GD14801 [Drosophila simulans]
gi|194197490|gb|EDX11066.1| GD14801 [Drosophila simulans]
Length = 893
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 147/524 (28%), Positives = 233/524 (44%), Gaps = 80/524 (15%)
Query: 99 STGGGNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAPRSMLLTWEEEFKKWGI 157
S G G I++ G GKT T+VFL + K H R +I P S L WE E + W
Sbjct: 282 SWGQGIPTILADEMGLGKTIQTVVFLYSLFKEGHCRGPFLITVPLSTLPNWERELELWA- 340
Query: 158 DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFE 217
PEL G G+ +IR +L ++ T + + ++
Sbjct: 341 ---------PELYCVTYVG----------GKTARAVIRKHELSFEEVTTKTMRENQTQYK 381
Query: 218 KLVSGDELSGILLDLPGL-------FVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTP 270
V I LD L V DE H R++ + F+ LSR + +++L+GTP
Sbjct: 382 FNVMLTSYEFISLDAAFLGSIDWAALVVDEAHRLRSNQSKFFRILSRYRIAYKLLLTGTP 441
Query: 271 FQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKEL 330
QNN +EL + L+ + L+T + ++SK +E++K L
Sbjct: 442 LQNNLEELFHLLNFLSSGKFNDLQTFQAEFTDVSK------------------EEQVKRL 483
Query: 331 KEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----C 385
E + P + + +S+P +V ++ QK+ K + K+F LN
Sbjct: 484 HEILEPHMLRRLKVDVLKSMPPKSEFIVRVELSSMQKKFYKHIL-TKNFKALNQKGGGRV 542
Query: 386 VSLLSV---------HPSLLPQQFFES-------FDVDSAKLARLKLDPEAGIKTRFLLI 429
SLL++ HP L P E+ ++++S A KLD + ++ L
Sbjct: 543 CSLLNIMMDLRKCCNHPYLFPSAAEEAPISPSGIYEMNSLTKASGKLD----LLSKMLKQ 598
Query: 430 LLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND 489
L + N +VL+FSQ +T ++ L H F EG + +DG RQ +I+ ND
Sbjct: 599 LKK--DNHRVLLFSQ----MTKMLNILEH-FLEGEGYQYDRIDGAIRGDLRQKAIDRFND 651
Query: 490 PSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHL 549
P S+ + L ST+A GINL A V++ D WNP + QA SRA+R+GQK+ V +Y
Sbjct: 652 PGSEQFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRF 711
Query: 550 ITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLED 593
+T ++E ++ RK+ +++V GG + E LED
Sbjct: 712 VTHNSVEERIMQVAKRKMMLTHLVVRPGMGGTATHFSKDE-LED 754
>gi|422419255|ref|ZP_16496210.1| DNA/RNA helicase protein [Listeria seeligeri FSL N1-067]
gi|313632979|gb|EFR99905.1| DNA/RNA helicase protein [Listeria seeligeri FSL N1-067]
Length = 1071
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 136/458 (29%), Positives = 202/458 (44%), Gaps = 73/458 (15%)
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYN 163
G I++ G GKT T+ FL + ++ P +PV I+ P S+L W+ E +K+ DIP
Sbjct: 636 GGILADDMGLGKTVQTISFLASELEEKPDLKPVLIVTPASLLYNWQSELEKFAPDIPVTV 695
Query: 164 LNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD 223
L+ G + + V + D + RG V LI Y L IL L+ F ++
Sbjct: 696 LH-----GTKESRLVEMEDMK---RGHVYLISYPSLRQ-----DILNLADVNFSSVI--- 739
Query: 224 ELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS 283
DE +N T +A+ +K LSGTP +N+ EL
Sbjct: 740 --------------IDESQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIYQ 785
Query: 284 LVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
+ F LR + EI K A++I + +KEL +KI
Sbjct: 786 TLMPGFFPSLRKFK----EIPYDKIATMIRPF--LLRRLKQDVVKELPDKIE-------- 831
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQ 398
T L L + ++ + ++ Q L ++ G S + L + PSL
Sbjct: 832 TNLYSELTDEQKTIYLAYLEKIQADLAES-NGNASEERIKLLAGLTRLRQICCDPSL--- 887
Query: 399 QFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRH 458
F E++ +S KL +L F I +++L+FSQ+ L +I +L
Sbjct: 888 -FVENYQGESGKLLQL-----------FDTIQTARENGKRLLIFSQFTGMLAIIRRKLEE 935
Query: 459 RFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVL 518
+GQ YMDGK K R +N N+ + I L S KA G+NLVGA V+L
Sbjct: 936 -----DGQTFFYMDGKTPAKTRLDMVNSFNE--GENDIFLISLKAGGTGLNLVGADTVIL 988
Query: 519 LDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
D+ WNP VE QA RA+R+GQKRVV V+ +IT T+E
Sbjct: 989 YDLWWNPAVEEQATGRAHRIGQKRVVQVFRMITKGTIE 1026
>gi|317026496|ref|XP_001389729.2| DNA-dependent ATPase [Aspergillus niger CBS 513.88]
Length = 993
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 146/551 (26%), Positives = 226/551 (41%), Gaps = 97/551 (17%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG F+++ + G + G G I++ G GKT T+ L
Sbjct: 280 KHLRPHQREGVRFLYECVMGMRSFN----------GEGAILADDMGLGKTLQTITLLWTL 329
Query: 128 MKLHPRC-------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P + +I+ P +++ W +EF+KW G E G
Sbjct: 330 LKQNPVYDSPPVVKKALIVCPVTLINNWRKEFRKW--------------LGNERIGVFVF 375
Query: 181 MDNRKR----GRGK---VGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP 233
D RKR RG+ V ++ Y KL S + G +G+
Sbjct: 376 DDKRKRLTDFTRGRAYSVMIVGYEKLRSVQEGLA----------------NSNGV----- 414
Query: 234 GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVL 293
+ V DEGH + +A+ + +RIILSGTP QN+ +E + LV VL
Sbjct: 415 DIIVADEGHRLKTLQNKSGQAIQSLNATKRIILSGTPIQNDLKEFFAAVDLVNPG---VL 471
Query: 294 RTVRKSGREISKAKHASLISSIGRCANHRDDEK----LKELKEKIAPFVNVHKGTVLQES 349
T + RE ++ S A +D EK +EL+E + F+ +L +
Sbjct: 472 GTFKSFVREF----EGPIVKSRQPEATRKDIEKGEARNEELRELTSKFMLRRTADILAKY 527
Query: 350 LPGLRHSVVILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSVHPSLL--- 396
LP V+ + Q + + A+ +S ++L + L PSLL
Sbjct: 528 LPPKTEYVLFCKATRTQATIYQNVLASPVFQSALGNSESALQLITILKKLCNSPSLLTPR 587
Query: 397 -----PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEP 448
P + + P + K R L LL+ T+EK+++ S Y
Sbjct: 588 DVNETPSETIAALLSSLPPNLLRHFTPSSSAKLRVLDQLLDGLRTKTSEKIVLVSNYTS- 646
Query: 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND-PSSQARIMLASTKACCEG 507
L L +DG +KRQS + N PS+ L S KA G
Sbjct: 647 ----TLNLLANLLTSLSLPFLRLDGSTPAQKRQSLVEDFNRLPSNLCFAFLLSAKAGGTG 702
Query: 508 INLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567
+NL+GASR+VL DV WNP + QA++R +R GQKR +Y ++ +LE +RQ K+
Sbjct: 703 LNLIGASRLVLFDVDWNPATDIQAMARIHRDGQKRHCRIYRILLKGSLEEKIWQRQVTKI 762
Query: 568 WWSNMVFPSSD 578
++ V D
Sbjct: 763 GLADSVMEKKD 773
>gi|297683312|ref|XP_002819327.1| PREDICTED: DNA repair and recombination protein RAD54B isoform 2
[Pongo abelii]
Length = 910
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 151/584 (25%), Positives = 242/584 (41%), Gaps = 120/584 (20%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ+EG F+++ + G G G I++ G GKT + +
Sbjct: 298 PHQKEGIIFLYECVMG----------MRMNGRCGAILADEMGLGKTLQCISLIWTLQCQG 347
Query: 132 PRC-RPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRK 185
P +PVI + P S++ W++EF+KW G E + + K
Sbjct: 348 PYGGKPVIKKTLIVTPGSLVNNWKKEFQKW--------------LGSERIKIFTVDQDHK 393
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPR 245
V+ ++ + +L +SY + L S D++ I DL + DEGH +
Sbjct: 394 -----------VEEFTKSIFYSVLIISYEML--LRSLDQIKNIKFDL---LICDEGHRLK 437
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE--- 302
N AL + +RIIL+GTP QN+ QE + V L + RK E
Sbjct: 438 NSAIKTTTALISLSCEKRIILTGTPIQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPII 497
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG--------TVLQESLPGLR 354
+S+ AS E+ KEL E+ A + G ++ + LP
Sbjct: 498 LSREPSAS--------------EEEKELGERRAAELTCLTGLFILRRTQEIINKYLPPKI 543
Query: 355 HSVVILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLL---SVHPSLLPQQFF 401
+VV +P Q L + ++G+ C+ L HP LL
Sbjct: 544 ENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLENSPHLICIGALKKLCNHPCLLFNSIK 603
Query: 402 E-----SFDVDSAK------LARLKLD--------PEAG---IKTRFLLILLELSTNEKV 439
E ++D + K L+ D E+G + ++ L ++ EL EKV
Sbjct: 604 EKECSSTYDKNEEKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPTEKV 663
Query: 440 LVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
++ S Y + L ++ E + R G +DG+ + +RQ ++ N S I L
Sbjct: 664 VLVSNYTQTLNILQEVCK-----RHGYAYTRLDGQTPISQRQQIVDGFNSQHSSVFIFLL 718
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
S+KA G+NL+G S ++L D+ WNP + QA+SR +R GQK VH+Y L+T+ T+E
Sbjct: 719 SSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKI 778
Query: 560 LRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLY 603
+RQ K V D T SE ++ + EE+ L+
Sbjct: 779 YQRQISKQGLCGAVV--------DLTKTSEHIQFSV-EELKNLF 813
>gi|358370139|dbj|GAA86751.1| dsDNA-dependent ATPase (Rad54b) [Aspergillus kawachii IFO 4308]
Length = 988
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 148/551 (26%), Positives = 227/551 (41%), Gaps = 97/551 (17%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+++ + G + G G I++ G GKT T+ L
Sbjct: 280 KHLRPHQREGVQFLYECVMGMRPFN----------GEGAILADDMGLGKTLQTITLLWTL 329
Query: 128 MKLHP--RCRPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P PV I+ P +++ W +EF+KW G E G
Sbjct: 330 LKQNPVHDSPPVVKKALIVCPVTLINNWRKEFRKW--------------LGNERIGVFVF 375
Query: 181 MDNRKR----GRGK---VGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP 233
D RKR RG+ V ++ Y KL S + G +G+
Sbjct: 376 DDKRKRLTDFTRGRAYSVMIVGYEKLRSVQEGLA----------------NSNGV----- 414
Query: 234 GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVL 293
+ V DEGH + +A+ + +RIILSGTP QN+ +E + LV VL
Sbjct: 415 DIIVADEGHRLKTLQNKSGQAIQSLNATKRIILSGTPIQNDLKEFFAAVDLVNPG---VL 471
Query: 294 RTVRKSGREISKAKHASLISSIGRCANHRDDEK----LKELKEKIAPFVNVHKGTVLQES 349
T + RE ++ S A +D EK +EL+E + F+ +L +
Sbjct: 472 GTFKSFVREF----EGPIVKSRQPEATRKDIEKGEARNEELRELTSKFMLRRTADILAKY 527
Query: 350 LPGLRHSVVILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSVHPSLL--- 396
LP V+ + Q + + A+ +S ++L + L PSLL
Sbjct: 528 LPPKTEYVLFCKATRTQATIYQNVLASPVFQSALGNSESALQLITILKKLCNSPSLLTPR 587
Query: 397 -----PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEP 448
P + + P + K R L LL+ T+EK+++ S Y
Sbjct: 588 DVNEKPSETIAALLSSLPPNLLRHFTPSSSAKLRVLDQLLDGLRTKTSEKIVLVSNYTS- 646
Query: 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND-PSSQARIMLASTKACCEG 507
L L +DG +KRQS + N PS+ L S KA G
Sbjct: 647 ----TLNLLANLLTSLSLPFLRLDGSTPAQKRQSLVEDFNRLPSNLCFAFLLSAKAGGTG 702
Query: 508 INLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567
+NL+GASR+VL DV WNP + QA++R +R GQKR +Y ++ +LE +RQ K+
Sbjct: 703 LNLIGASRLVLFDVDWNPATDIQAMARIHRDGQKRHCRIYRILLKGSLEEKIWQRQVTKI 762
Query: 568 WWSNMVFPSSD 578
++ V D
Sbjct: 763 GLADSVMEKRD 773
>gi|241952408|ref|XP_002418926.1| dna repair and recombination protein rdh54, putative [Candida
dubliniensis CD36]
gi|223642265|emb|CAX44234.1| dna repair and recombination protein rdh54, putative [Candida
dubliniensis CD36]
Length = 882
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 139/547 (25%), Positives = 244/547 (44%), Gaps = 68/547 (12%)
Query: 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQ 125
+ K + PHQ EG F+++ + G D D GNGC+++ G GKT +T+ +
Sbjct: 262 LSKVLRPHQVEGVRFMYECLMGYRDFD----------GNGCLLADEMGLGKTLMTITTIW 311
Query: 126 AYMKLHPRC--------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGA 177
+K +P + +++ P +++ W +EFKKW L +L+ N A
Sbjct: 312 TLLKQNPFLDQKNAVVNKVLVVCPVTLISNWRQEFKKW--------LGANKLNVLTLNNA 363
Query: 178 VALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG-DELSGILLDLPGLF 236
M N KR ++ + KL ++ +L ++Y EK+++ DELS + DL
Sbjct: 364 ---MTNEKRD-----ILNFGKLNVYQ----VLVVNY---EKIMAHFDELSTVSFDL---L 405
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTV 296
V DEGH +N + L ++ ++++L+GTP QN E +S + + L+
Sbjct: 406 VCDEGHRLKNSANKVLNNLIKLNIPKKVVLTGTPIQNELVEFHTLISFLNPKVLPELKLF 465
Query: 297 RKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHS 356
+++ I+ A ++ R +E ++L + F+ ++L L
Sbjct: 466 QRNF--ITPISRARDVNCFDPEVKKRGEEISQQLIKLTQSFILRRTQSILANYLTQKTDI 523
Query: 357 VVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSV---------HPSLLPQQFFESFDVD 407
++ + P Q L + +K F + N ++ PSLL F V+
Sbjct: 524 LLFVPPTSSQLELFNYITNLKKFNQFNSGSDSFTMINLFKKICNSPSLLADDEFFKKIVE 583
Query: 408 SAKLARLKLDPEAGIKTRFLLILLEL-STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQ 466
+ L +G + +LLE+ S EK+++ S Y + L L+ LR + N +
Sbjct: 584 Q----KFNLGMSSGKLNILVPLLLEIVSLKEKIVLISNYTKTLDLLETVLR-KINLTFSR 638
Query: 467 EVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPF 526
+DG R +N N + + L S+K+ GINLVGASR++L D WNP
Sbjct: 639 ----LDGSTPNNVRSKLVNQFNT-NPDINVFLLSSKSGGMGINLVGASRLILFDNDWNPA 693
Query: 527 VERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTT 586
+ Q++SR +R GQ + +Y L T+ ++ +RQ K S+ F +D
Sbjct: 694 TDLQSMSRIHRDGQVKPCFIYRLFTTGCIDEKIFQRQLVKNKLSSK-FLDNDSSSKSDVF 752
Query: 587 ASEPLED 593
SE L++
Sbjct: 753 DSEDLKN 759
>gi|403217811|emb|CCK72304.1| hypothetical protein KNAG_0J02230 [Kazachstania naganishii CBS
8797]
Length = 929
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 153/599 (25%), Positives = 257/599 (42%), Gaps = 95/599 (15%)
Query: 68 KKMFPHQREGFEFIWKNIAG-----GIDLDELKNS---TSTGGGNGCIISHAPGTGKTGL 119
K M HQREG +FI+ + G + LD + S NGC+++ G GKT +
Sbjct: 260 KHMRNHQREGVKFIYDCVMGLLRTKEVPLDVVDRSLILEKDSDINGCLLADDMGLGKTLM 319
Query: 120 TLVFLQAYMKLHP----------------RCRPV-IIAPRSMLLTWEEEFKKW------G 156
T+ + +K P C+ V I+ P +++ W +EF KW G
Sbjct: 320 TITLIWTLLKQTPYASKVECSQSGVPLQGTCKKVLIVCPVTLIGNWTKEFHKWLGHNRVG 379
Query: 157 IDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLF 216
+ + + N P++ + N + R + +V +I Y KL L LS L
Sbjct: 380 L-LTLHPNNTPDM---DRNAVKNFL--RVQRTYQVLIIGYEKL---------LNLSEELQ 424
Query: 217 EKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQ 276
K ++ + + L V DEGH +N + + L + +R+++LSGTP QN+
Sbjct: 425 SKQINMNRID--------LLVCDEGHRLKNSSSKVLNVLKELDVKRKVLLSGTPIQNDLT 476
Query: 277 ELENTLSLVRQE-FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIA 335
E + + G RK I++A+ + + +E+ KE+ E
Sbjct: 477 EFYTIIDFINPGILGSFNNFKRKFIVPITRARDVA--NKFNDDVQEVGEERSKEIIEITN 534
Query: 336 PFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSF----VELNYCVSLLSV 391
F+ +L + LP ++ +P + Q + A+ + +N + L+++
Sbjct: 535 TFILRRTNDILTKYLPPKTEVILFCKPSKVQLDVFYAILNHSKLDFGSLTVNSSLGLITL 594
Query: 392 ------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE----LSTNEKVLV 441
PSLL + + + + L K R L +L + EKV++
Sbjct: 595 MKKICNSPSLLKNDPYYCKILKTPEKNIQYLSALDSGKLRVLSAILNQIRTTGSEEKVVI 654
Query: 442 FSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLN-DPSSQARIML 498
S Y + L +I N +++Y +DG K+R + IN N +P+ A L
Sbjct: 655 VSNYTQTLDIIQ-------NVLNSNKMVYCRLDGSTAQKERDAIINSFNKNPAVFA--FL 705
Query: 499 ASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWD 558
S K+ G+NL+GASR++L D WNP V+ QA+SR +R GQK+ +Y L+T+ ++
Sbjct: 706 LSAKSGGVGLNLIGASRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEK 765
Query: 559 KLRRQARKVWWSNMVFPSSDG----GGNDQTTASEPLEDKILEEMAQLYNNPSETLINA 613
L+RQ K S +S+ G ND E L+D L+ S+TL N
Sbjct: 766 VLQRQLMKHSLSQKFLDNSNDTAKRGSNDDLFTKEELKD--------LFTISSDTLSNT 816
>gi|159489044|ref|XP_001702507.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280529|gb|EDP06286.1| predicted protein [Chlamydomonas reinhardtii]
Length = 533
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 150/583 (25%), Positives = 236/583 (40%), Gaps = 104/583 (17%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT--GLTLVFLQAYMK 129
PHQREG +F++ + G G GCI++ G GKT G+TL++
Sbjct: 8 PHQREGVQFMFDCVTG--------QRLEGKHGAGCILADDMGLGKTLQGITLLWTLLGGG 59
Query: 130 LHPRC------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL-MD 182
R +I+ P S++ W+ E KW + L E S ++ ++AL +D
Sbjct: 60 HPLLGGVPLARRAIIVCPTSLVSNWDNECSKW-LKGRLTTLAMCESSREDVCSSIALFLD 118
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ G +V +I Y +++M + + L + DE H
Sbjct: 119 SSNTGLHRVLIISY---ETFRMHADKFQVPHAC------------------DLLMCDEAH 157
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR-------QEFGEVLRT 295
+ND T +AL + +RR++LSGTP QN+ E + EF
Sbjct: 158 RLKNDATLTNRALDNMPCKRRVLLSGTPMQNHLDEFFAMVDFCNPGVLGSAAEFRRRYEA 217
Query: 296 VRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRH 355
+GRE + +E+ EL F+ +L + LP
Sbjct: 218 PILAGREPDATPEQVALG----------EERSAELSGLTNRFILRRTNKLLSQHLPPKVI 267
Query: 356 SVVILQPDEFQKRLC----------------KAVEGVKSFVELNYCVSLLSVHPSLLPQQ 399
VV + E Q+ L K GV S + + L HP L+
Sbjct: 268 EVVCCRLTELQRALYIHFLQSKAARRVLNAGKTTSGVLSAIT---SLKKLCNHPKLIYDA 324
Query: 400 F------------FESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIE 447
E F+V A+ A + + + R L +L +T+ VLV S Y
Sbjct: 325 AAAAAAGEDGEGKIEGFEVGPAEGA---VGGKMAVLARMLHVLYTETTDRIVLV-SNYTS 380
Query: 448 PLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEG 507
L L + R R G + +DG + KRQ + V NDP + L S+KA G
Sbjct: 381 TLDLFVALCRER-----GYPFVRLDGTTTINKRQKLVKVFNDPVEKQFAFLLSSKAGGCG 435
Query: 508 INLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567
+NL+GA+R+VL D WNP + QA +R +R GQ++ V VY +++ ++E +RQ K
Sbjct: 436 LNLIGANRLVLFDPDWNPANDAQAAARVWRDGQRKRVFVYRFLSTGSIEEKVFQRQMSKE 495
Query: 568 WWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQL-YNNPSET 609
+V + N T+ ED L E+ L ++PS+T
Sbjct: 496 GLKQLVGKTGKAAANVMTS-----ED--LRELFSLNADSPSDT 531
>gi|62472261|ref|NP_001014591.1| Mi-2, isoform B [Drosophila melanogaster]
gi|61678453|gb|AAX52739.1| Mi-2, isoform B [Drosophila melanogaster]
Length = 1983
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 140/539 (25%), Positives = 238/539 (44%), Gaps = 69/539 (12%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-Y 127
++ P+Q EG ++ + GID I++ G GKT T+ FL + Y
Sbjct: 730 QLHPYQIEGINWLRYSWGQGID---------------TILADEMGLGKTIQTVTFLYSLY 774
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG 187
+ H R ++ P S L+ WE EF+ W D FY + G +++ AV +
Sbjct: 775 KEGHCRGPFLVAVPLSTLVNWEREFELWAPD--FYCIT---YIGDKDSRAVIRENELSFE 829
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND 247
G + + +L + + +L SY +L+S D +D + V DE H +++
Sbjct: 830 EGAIRGSKVSRLRTTQYKFNVLLTSY----ELISMDAACLGSIDW-AVLVVDEAHRLKSN 884
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAK 307
+ F+ L+ +++L+GTP QNN +EL + L+ +S+ K
Sbjct: 885 QSKFFRILNSYTIAYKLLLTGTPLQNNLEELFHLLNF------------------LSRDK 926
Query: 308 HASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQK 367
L + G A+ +E++K L E + P + T + +++P +V ++ QK
Sbjct: 927 FNDLQAFQGEFADVSKEEQVKRLHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVELSAMQK 986
Query: 368 RLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKLAR 413
+ K + K++ LN SL+++ HP L P E+
Sbjct: 987 KFYKFI-LTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSAAEEATTAAGGLYEI 1045
Query: 414 LKLDPEAGIKTRFLLILLEL-STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY-- 470
L AG +L +L + N +VL+FSQ + L ++ + L EG++ Y
Sbjct: 1046 NSLTKAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFL-------EGEQYKYER 1098
Query: 471 MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQ 530
+DG RQ +I+ N P +Q + L ST+A GINL A V++ D WNP + Q
Sbjct: 1099 IDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1158
Query: 531 AISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASE 589
A SRA+R+GQ V +Y +T ++E + RK+ +++V GG T E
Sbjct: 1159 AFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGANFTKQE 1217
>gi|189230031|ref|NP_001121509.1| RAD54 homolog B [Xenopus (Silurana) tropicalis]
gi|183986491|gb|AAI66345.1| rad54b protein [Xenopus (Silurana) tropicalis]
Length = 897
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 146/545 (26%), Positives = 242/545 (44%), Gaps = 96/545 (17%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ+EG F+++ + G + ++E G I++ G GKT + + ++
Sbjct: 283 PHQKEGILFLYECVMG-MRVNE---------RFGAILADEMGLGKTLQCISLIWTLIRQG 332
Query: 132 PRC-RPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRK 185
P +PVI + P S++ W +EF+KW G E A+ + K
Sbjct: 333 PYGGKPVIKKALIVTPGSLVKNWRKEFQKW--------------LGTERIRVFAVDQDHK 378
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPR 245
V LYS +L +SY + + + +++ + D+ + DEGH +
Sbjct: 379 -----VEEFMKSPLYS------VLIISYEMLLRCL--EQIQSLDFDV---VICDEGHRLK 422
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE-IS 304
N AL+ + +RIILSGTP QN+ QE + V L T RK E I
Sbjct: 423 NTSIKTTSALASLTCSKRIILSGTPVQNDLQEFFALIEFVNPAALGSLSTYRKIFEEPII 482
Query: 305 KAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDE 364
+++ + + + +E+ EL F+ V+ + LP S+V +P +
Sbjct: 483 RSREPTATTE----EKNLGEERAAELARLTGLFILRRTQEVINKFLPPKIESIVFCRPSQ 538
Query: 365 FQKRLCKAV---EGVKSFVELN-------YCVSLLSV---HPSLL----------PQQ-- 399
FQ L + + VKS + + C+ L HP LL P Q
Sbjct: 539 FQLDLYRKLLNSRTVKSCLLGSGESSPHLVCIGALKKLCNHPFLLFRTIQGKSTNPDQDE 598
Query: 400 --FFESF------DVDSAKLARLKLDPEAG---IKTRFLLILLELSTNEKVLVFSQYIEP 448
+ES D D AK++ + E+G + + L + ELS +E+V++ S Y +
Sbjct: 599 HNLYESVAEVFPQDYDGAKIS----ESESGKLLVLSNLLSRIRELSPSERVVLVSNYTQT 654
Query: 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGI 508
L ++ + + G +DG+ V +RQ ++ N S I L S+KA G+
Sbjct: 655 LNILQDLCN-----QHGYSCTRLDGQTPVTQRQHIVDGFNSKYSTDFIFLLSSKAGGVGL 709
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NL+GAS ++L D+ WNP + QA++R +R GQ+ VH+Y L+T+ +LE +RQ K
Sbjct: 710 NLIGASHLILYDLDWNPANDIQAMARVWRDGQRHTVHIYRLLTTGSLEEKIYQRQISKQG 769
Query: 569 WSNMV 573
S V
Sbjct: 770 LSGAV 774
>gi|134055853|emb|CAK96198.1| unnamed protein product [Aspergillus niger]
Length = 1007
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 146/551 (26%), Positives = 226/551 (41%), Gaps = 97/551 (17%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG F+++ + G + G G I++ G GKT T+ L
Sbjct: 294 KHLRPHQREGVRFLYECVMGMRSFN----------GEGAILADDMGLGKTLQTITLLWTL 343
Query: 128 MKLHPRC-------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P + +I+ P +++ W +EF+KW G E G
Sbjct: 344 LKQNPVYDSPPVVKKALIVCPVTLINNWRKEFRKW--------------LGNERIGVFVF 389
Query: 181 MDNRKR----GRGK---VGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP 233
D RKR RG+ V ++ Y KL S + G +G+
Sbjct: 390 DDKRKRLTDFTRGRAYSVMIVGYEKLRSVQEGLA----------------NSNGV----- 428
Query: 234 GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVL 293
+ V DEGH + +A+ + +RIILSGTP QN+ +E + LV VL
Sbjct: 429 DIIVADEGHRLKTLQNKSGQAIQSLNATKRIILSGTPIQNDLKEFFAAVDLVNPG---VL 485
Query: 294 RTVRKSGREISKAKHASLISSIGRCANHRDDEK----LKELKEKIAPFVNVHKGTVLQES 349
T + RE ++ S A +D EK +EL+E + F+ +L +
Sbjct: 486 GTFKSFVREF----EGPIVKSRQPEATRKDIEKGEARNEELRELTSKFMLRRTADILAKY 541
Query: 350 LPGLRHSVVILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSVHPSLL--- 396
LP V+ + Q + + A+ +S ++L + L PSLL
Sbjct: 542 LPPKTEYVLFCKATRTQATIYQNVLASPVFQSALGNSESALQLITILKKLCNSPSLLTPR 601
Query: 397 -----PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEP 448
P + + P + K R L LL+ T+EK+++ S Y
Sbjct: 602 DVNETPSETIAALLSSLPPNLLRHFTPSSSAKLRVLDQLLDGLRTKTSEKIVLVSNYTS- 660
Query: 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND-PSSQARIMLASTKACCEG 507
L L +DG +KRQS + N PS+ L S KA G
Sbjct: 661 ----TLNLLANLLTSLSLPFLRLDGSTPAQKRQSLVEDFNRLPSNLCFAFLLSAKAGGTG 716
Query: 508 INLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567
+NL+GASR+VL DV WNP + QA++R +R GQKR +Y ++ +LE +RQ K+
Sbjct: 717 LNLIGASRLVLFDVDWNPATDIQAMARIHRDGQKRHCRIYRILLKGSLEEKIWQRQVTKI 776
Query: 568 WWSNMVFPSSD 578
++ V D
Sbjct: 777 GLADSVMEKKD 787
>gi|350424653|ref|XP_003493868.1| PREDICTED: chromodomain-helicase-DNA-binding protein Mi-2 homolog
[Bombus impatiens]
Length = 1965
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 139/529 (26%), Positives = 238/529 (44%), Gaps = 67/529 (12%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-Y 127
++ P+Q EG ++ + GID I++ G GKT T+ FL + Y
Sbjct: 719 QLHPYQLEGLNWLRYSWGQGID---------------TILADEMGLGKTIQTITFLYSLY 763
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG 187
+ H + ++ P S ++ WE EF+ W D FY + G +++ V +
Sbjct: 764 KEGHCKGPFLVSVPLSTIINWEREFETWAPD--FYCVT---YVGDKDSRIVIRENELSFE 818
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND 247
G V R K+ S ++ +L SY +L+S D +D + V DE H +++
Sbjct: 819 EGAVRGGRASKIRSNQIKFNVLLTSY----ELISIDSACLGSIDW-AVLVVDEAHRLKSN 873
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS-LVRQEFGEVLRTVRKSGREISKA 306
+ F+ L+ +++L+GTP QNN +EL + L+ L R +F + L + +ISK
Sbjct: 874 QSKFFRLLASYNIAYKLLLTGTPLQNNLEELFHLLNFLCRDKFND-LAAFQNEFADISK- 931
Query: 307 KHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQ 366
+E++K+L E + P + + +++P +V ++ Q
Sbjct: 932 -----------------EEQVKKLHELLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQ 974
Query: 367 KRLCKAVEGVKSFVELN-----YCVSLLSV---------HPSLLPQQFFESFDVDSAKLA 412
K+ K + ++F LN VSLL++ HP L P E+ +
Sbjct: 975 KKYYKYIL-TRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAASQEAPTAPNGSYE 1033
Query: 413 RLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYM 471
L AG +L +L + +VL+FSQ + L ++ + L EG + +
Sbjct: 1034 TSALIKAAGKLVLLSKMLKKLRDDGHRVLIFSQMTKMLDILEDYLEG-----EGYKYERI 1088
Query: 472 DGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531
DG +RQ +I+ N P +Q + L ST+A GINL A V++ D WNP + QA
Sbjct: 1089 DGNITGAQRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQA 1148
Query: 532 ISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGG 580
SRA+R+GQ V +Y +T ++E + RK+ +++V GG
Sbjct: 1149 FSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGG 1197
>gi|345561925|gb|EGX44997.1| hypothetical protein AOL_s00173g98 [Arthrobotrys oligospora ATCC
24927]
Length = 1691
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 140/497 (28%), Positives = 223/497 (44%), Gaps = 75/497 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFY 162
G I++ G GKT + FL+ + H +++AP S + W E + W +
Sbjct: 751 GKNAILADEMGLGKTIQIISFLEVLRQEHKVWPCLVVAPHSTVPNWVREIRTWAPGM--- 807
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGK-VGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
VA G G+ + L + +L+S L +
Sbjct: 808 -------------RVVAFF-----GSGESLRLTKKYELFSSAPSASARDLKCHIVVSSYQ 849
Query: 222 G-DELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ S L +P + V DEG ++D+T ++K LS +K + +++L+GTP QNN +EL
Sbjct: 850 AIADHSSALKSVPWQVLVVDEGQRLKSDETILYKELSALKFQHKVLLTGTPLQNNIRELF 909
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP-FV 338
N L + + + + + E++K E L EL E+I P F+
Sbjct: 910 NLLQFLDPDNVNA-KELEEQFSEVTK-------------------ENLNELHERIRPYFL 949
Query: 339 NVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV-----EGVKSFV-----------EL 382
K L++ LP + +V L + Q+ L K++ E +++ + +L
Sbjct: 950 RRTKAQALKD-LPPISDVIVPLTVTKLQQELLKSIYSKDAELLRAIMSKTGGQPANRSKL 1008
Query: 383 NYCVSLLS---VHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFL-LILLEL-STNE 437
N V L HP + Q E D L R +D A K +FL LIL +L
Sbjct: 1009 NNIVMQLRKVLCHPFVYDQNVEEKLQ-DQQLLHRNLVD--ASCKLKFLELILPKLHEKGH 1065
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ++ L IME + G + L +DG D ++Q I+ N P S
Sbjct: 1066 RVLMFSQFLGMLD-IMEDFLNGL----GLQTLRLDGSNDTAEKQKLIDAYNAPESPYFAF 1120
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
+ ST+A GINL A V++LD WNP + QAI+RA+R+GQK+ V V+HL+T+ + E
Sbjct: 1121 ILSTRAGGVGINLASADTVIILDPDWNPHQDLQAIARAHRIGQKKKVLVFHLMTARSCEE 1180
Query: 558 DKLRRQARKVWWSNMVF 574
LR K+ +MV
Sbjct: 1181 KMLRMAKDKLGLDHMVI 1197
>gi|156379220|ref|XP_001631356.1| predicted protein [Nematostella vectensis]
gi|156218395|gb|EDO39293.1| predicted protein [Nematostella vectensis]
Length = 836
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 155/539 (28%), Positives = 235/539 (43%), Gaps = 88/539 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL- 130
PHQR+G F+++ + G L+N GNG I++ G GKT + + K
Sbjct: 227 PHQRDGVLFLYECVMG------LRNF----NGNGAILADEMGLGKTLQCIALIWTLHKQG 276
Query: 131 ----HPRC-RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRK 185
P C R +II P S++ W EF+KW L + R
Sbjct: 277 PYGGQPVCNRILIITPGSLVKNWCAEFRKW------------------------LGNERM 312
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPR 245
R +R VK + +L +SY +F + S D++ I DL F+ DE H +
Sbjct: 313 RVFPVTSDMR-VKEFIISPIYPVLIISYEMFIR--SQDDIMNIKFDL---FICDEAHRLK 366
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGEVLRTVRK----SG 300
N +S +KTRRR++L+GTP QN+ +E + L G + R V + +G
Sbjct: 367 NSAIKTTTLISGLKTRRRVLLTGTPIQNDLKEFHTLIELCNPGVLGTLFRRVYEQPIVNG 426
Query: 301 REISKAKHASLI-----SSIGRCANHRDDEKLKELKEKIAP----FVNVHKGTVLQESLP 351
++ L+ S + R + E+ EK P V + LQ +L
Sbjct: 427 QQPGATSEDKLLGQTRASELNRLTRLFFLRRTSEINEKYLPPKVEMVVFCRPAHLQVTL- 485
Query: 352 GLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLL---PQQFFESFDVDS 408
RH L F + +A + +E + L HP+LL Q D D
Sbjct: 486 -YRH----LLTSRFLRGCLRASCPSSTHLECIGALKKLCNHPTLLYSASQGANTLGDEDQ 540
Query: 409 AKL--ARLKLDPE-----------AGIKTRFLLILLEL-STNEKVLVFSQYIEPLTLIME 454
L LKL PE +G T +L E+ T E+V++ S Y + L I++
Sbjct: 541 VSLYDGLLKLFPECNDASELSIAQSGKLTVLNSMLEEIHCTGERVVLVSNYSQTLD-ILQ 599
Query: 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGAS 514
+L +R L +DG KRQS + N Q + L S+KA G+NL+GAS
Sbjct: 600 KLCTVKKYR----YLRLDGSTPTAKRQSLVERFNAKHCQDFVFLLSSKAGGVGLNLIGAS 655
Query: 515 RVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
R++L D+ WNP + QA++R +R GQ+R V +Y L+T+ T+E +RQ K S V
Sbjct: 656 RLILYDIDWNPANDLQAMARVWRDGQRRRVVIYRLLTTGTIEEKIYQRQTTKQGLSGAV 714
>gi|350583049|ref|XP_003355071.2| PREDICTED: DNA repair and recombination protein RAD54B-like [Sus
scrofa]
Length = 895
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 147/540 (27%), Positives = 223/540 (41%), Gaps = 97/540 (17%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G G I++ G GKT + +
Sbjct: 284 PHQREGIIFLYECVMG----------MRVNGRCGAILADEMGLGKTLQCISLIWTLQCQG 333
Query: 132 PRC-RPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRK 185
P +PVI + P S++ W +EF+KW G E + + K
Sbjct: 334 PYGGKPVIKKTLIVTPGSLVNNWRKEFQKW--------------LGSERIKIFTVDPDHK 379
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPR 245
V LYS +L +SY + L S D++ I DL + DEGH +
Sbjct: 380 -----VEEFTKSPLYS------VLIISYEML--LRSLDQIKNIKFDL---LICDEGHRLK 423
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N AL + +RIIL+GTP QN+ QE + + V L RK E
Sbjct: 424 NSAIKTTTALFSLPCEKRIILTGTPVQNDLQEFFSLIDFVNPGILGSLSCYRKIYEE--- 480
Query: 306 AKHASLISSIGRCANHRDDE----KLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQ 361
+I+S A+ + E + EL F+ V+ + LP +VV +
Sbjct: 481 ----PIITSRQPSASQEEKELGERRACELTCLTGLFILRRTQEVINKYLPPKIENVVFCR 536
Query: 362 PDEFQKRLCK----------AVEGVKSFVELNYCVSLLSV---HPSLLPQQFFE---SFD 405
P Q L + ++G+ C+ L HP LL E S
Sbjct: 537 PGALQIELYRKLLNSQAVRFCLQGLMENSSHLICIGALKKLCNHPCLLFSSVKEKECSSA 596
Query: 406 VDSAKLARLKLD----------------PEAG---IKTRFLLILLELSTNEKVLVFSQYI 446
D + RL D E+G + ++ L ++ EL EKV++ S Y
Sbjct: 597 WDENEERRLYEDLLKVFPPDYNPLMFAEEESGKLQVLSKLLAVIHELRPAEKVVLVSNYT 656
Query: 447 EPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCE 506
+ L ++ E R R G +DG+ + +RQ ++ N S I L S+KA
Sbjct: 657 QTLNILQEVCR-----RHGYGCTRLDGQTPISQRQQIVDGFNSKYSSDFIFLLSSKAGGV 711
Query: 507 GINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
G+NL+G S ++L D+ WNP + QA+SR +R GQK VH+Y L+T+ T+E +RQ K
Sbjct: 712 GLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISK 771
>gi|340726708|ref|XP_003401695.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein Mi-2 homolog [Bombus terrestris]
Length = 1974
Score = 139 bits (350), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 139/529 (26%), Positives = 238/529 (44%), Gaps = 67/529 (12%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-Y 127
++ P+Q EG ++ + GID I++ G GKT T+ FL + Y
Sbjct: 728 QLHPYQLEGLNWLRYSWGQGID---------------TILADEMGLGKTIQTITFLYSLY 772
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG 187
+ H + ++ P S ++ WE EF+ W D FY + G +++ V +
Sbjct: 773 KEGHCKGPFLVSVPLSTIINWEREFETWAPD--FYCVT---YVGDKDSRIVIRENELSFE 827
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND 247
G V R K+ S ++ +L SY +L+S D +D + V DE H +++
Sbjct: 828 EGAVRGGRASKIRSNQIKFNVLLTSY----ELISIDSACLGSIDW-AVLVVDEAHRLKSN 882
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS-LVRQEFGEVLRTVRKSGREISKA 306
+ F+ L+ +++L+GTP QNN +EL + L+ L R +F + L + +ISK
Sbjct: 883 QSKFFRLLASYNIAYKLLLTGTPLQNNLEELFHLLNFLCRDKFND-LAAFQNEFADISK- 940
Query: 307 KHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQ 366
+E++K+L E + P + + +++P +V ++ Q
Sbjct: 941 -----------------EEQVKKLHELLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQ 983
Query: 367 KRLCKAVEGVKSFVELN-----YCVSLLSV---------HPSLLPQQFFESFDVDSAKLA 412
K+ K + ++F LN VSLL++ HP L P E+ +
Sbjct: 984 KKYYKYIL-TRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAASQEAPTAPNGSYE 1042
Query: 413 RLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYM 471
L AG +L +L + +VL+FSQ + L ++ + L EG + +
Sbjct: 1043 TSALIKAAGKLVLLSKMLKKLRDDGHRVLIFSQMTKMLDILEDYLEG-----EGYKYERI 1097
Query: 472 DGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531
DG +RQ +I+ N P +Q + L ST+A GINL A V++ D WNP + QA
Sbjct: 1098 DGNITGAQRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQA 1157
Query: 532 ISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGG 580
SRA+R+GQ V +Y +T ++E + RK+ +++V GG
Sbjct: 1158 FSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGG 1206
>gi|428672984|gb|EKX73897.1| recombinational repair protein, putative [Babesia equi]
Length = 1841
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 134/466 (28%), Positives = 207/466 (44%), Gaps = 65/466 (13%)
Query: 137 VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRY 196
II P S++ WE E KKW L GK A+A GR KV I
Sbjct: 1253 AIICPASLVSNWESEIKKW-------------LRGKCPCTAIA-----DSGREKV--ISA 1292
Query: 197 VKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALS 256
+ + + + +L SY + + L G+ +DL + DE H +ND T ++S
Sbjct: 1293 FEGFKYDNNSRVLISSYETYRMHCA--RLQGVPIDL---IICDEAHRLKNDKTQTSLSIS 1347
Query: 257 RIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGEVLRTVRKSGREISKAKHASLISSI 315
+ R++LSGTP QN+ E + +SL + G+V R I +
Sbjct: 1348 SSPAKMRLMLSGTPIQNDLNEFYSLISLCNPDVLGDVNNFRRCFANPILIGREPDATPEQ 1407
Query: 316 GRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV-- 373
R A R L EL FV +L + LP V + QK + K+
Sbjct: 1408 QRMAGDR----LAELSHITNQFVLRRTNVLLSKVLPPKIILNVFCNLTDIQKTIYKSFVN 1463
Query: 374 ----------EGVKSFVELNYCVSLLSV--HPSLLPQ----------QFFESFDVDSA-- 409
EGV S L SL+ + HP L+ + FE+ ++ S
Sbjct: 1464 SKRWKNIIKDEGVFSRT-LTAIQSLMKLCNHPLLIKRGGLLSTPDVDDLFENIELASKNN 1522
Query: 410 --KLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQE 467
K R L + + R LL + + N++V++ S Y + L I E+L N+
Sbjct: 1523 KHKCCRCDLSGKILVLYR-LLYHIRKNGNDRVVIISNYTQTLD-IFERLCRECNY----P 1576
Query: 468 VLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFV 527
+ +DG +KKR + NDP++ + I L S+KA GINL+GA+R+VL D WNP
Sbjct: 1577 FVRLDGTISIKKRHKLVTTFNDPTTNSFIFLLSSKAGGCGINLIGANRLVLFDPDWNPAN 1636
Query: 528 ERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
++QA++R +R GQK+V ++Y ++ T+E +RQ K S+M+
Sbjct: 1637 DKQALARVWRDGQKKVCYIYRFFSTGTIEEKIYQRQICKDGLSSML 1682
>gi|24667055|ref|NP_649154.2| Mi-2, isoform A [Drosophila melanogaster]
gi|281366478|ref|NP_001163476.1| Mi-2, isoform C [Drosophila melanogaster]
gi|13124018|sp|O97159.2|CHDM_DROME RecName: Full=Chromodomain-helicase-DNA-binding protein Mi-2 homolog;
AltName: Full=ATP-dependent helicase Mi-2; Short=dMi-2
gi|23093096|gb|AAF49099.2| Mi-2, isoform A [Drosophila melanogaster]
gi|272455249|gb|ACZ94747.1| Mi-2, isoform C [Drosophila melanogaster]
Length = 1982
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 140/539 (25%), Positives = 238/539 (44%), Gaps = 69/539 (12%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-Y 127
++ P+Q EG ++ + GID I++ G GKT T+ FL + Y
Sbjct: 729 QLHPYQIEGINWLRYSWGQGID---------------TILADEMGLGKTIQTVTFLYSLY 773
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG 187
+ H R ++ P S L+ WE EF+ W D FY + G +++ AV +
Sbjct: 774 KEGHCRGPFLVAVPLSTLVNWEREFELWAPD--FYCIT---YIGDKDSRAVIRENELSFE 828
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND 247
G + + +L + + +L SY +L+S D +D + V DE H +++
Sbjct: 829 EGAIRGSKVSRLRTTQYKFNVLLTSY----ELISMDAACLGSIDW-AVLVVDEAHRLKSN 883
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAK 307
+ F+ L+ +++L+GTP QNN +EL + L+ +S+ K
Sbjct: 884 QSKFFRILNSYTIAYKLLLTGTPLQNNLEELFHLLNF------------------LSRDK 925
Query: 308 HASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQK 367
L + G A+ +E++K L E + P + T + +++P +V ++ QK
Sbjct: 926 FNDLQAFQGEFADVSKEEQVKRLHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVELSAMQK 985
Query: 368 RLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKLAR 413
+ K + K++ LN SL+++ HP L P E+
Sbjct: 986 KFYKFI-LTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSAAEEATTAAGGLYEI 1044
Query: 414 LKLDPEAGIKTRFLLILLEL-STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY-- 470
L AG +L +L + N +VL+FSQ + L ++ + L EG++ Y
Sbjct: 1045 NSLTKAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFL-------EGEQYKYER 1097
Query: 471 MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQ 530
+DG RQ +I+ N P +Q + L ST+A GINL A V++ D WNP + Q
Sbjct: 1098 IDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1157
Query: 531 AISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASE 589
A SRA+R+GQ V +Y +T ++E + RK+ +++V GG T E
Sbjct: 1158 AFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGANFTKQE 1216
>gi|270013510|gb|EFA09958.1| hypothetical protein TcasGA2_TC012115 [Tribolium castaneum]
Length = 1969
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 142/516 (27%), Positives = 232/516 (44%), Gaps = 68/516 (13%)
Query: 99 STGGGNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGI 157
S G G I++ G GKT T+ FL + Y + H + ++ P S ++ WE EF+ W
Sbjct: 739 SWGQGIDTILADEMGLGKTIQTITFLYSLYKEGHCKGPFLVSVPLSTIINWEREFETWAP 798
Query: 158 DIPFYNLNKPELSGKENNGAVALMDNR---KRGRGKVGLIRYVKLYSWKMGTGILGLSYR 214
D FY + G +++ AV + +N + K G I VK S K +L SY
Sbjct: 799 D--FYVIT---YVGDKDSRAV-IRENEFSFEENVSKSGRISRVKASSIKFN--VLLTSYE 850
Query: 215 LFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNN 274
L + L I + V DE H +++ + F+ L+ + +++L+GTP QNN
Sbjct: 851 LIS--IDATCLGSIEW---AVLVVDEAHRLKSNQSKFFRLLNSYNIQYKLLLTGTPLQNN 905
Query: 275 FQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKI 334
+EL + L+ + + L T + +ISK +E++K+L E +
Sbjct: 906 LEELFHLLNFLNSQKFNDLATFQNEFADISK------------------EEQVKKLHELL 947
Query: 335 APFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN-----YCVSLL 389
P + + +++P +V ++ QK+ K + ++F LN VSLL
Sbjct: 948 GPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYI-LTRNFEALNPKGGGQSVSLL 1006
Query: 390 SV---------HPSLLPQQFFES-------FDVDSAKLARLKLDPEAGIKTRFLLILLEL 433
++ HP L P E+ +D+ S A KL + + L IL E
Sbjct: 1007 NIMMDLKKCCNHPYLFPVAAEEAPIGPTGGYDIQSLIKASGKL----VLLAKMLRILRE- 1061
Query: 434 STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQ 493
+VL+FSQ + L ++ + L EG + +DG RQ +I+ N P +Q
Sbjct: 1062 -QGHRVLIFSQMTKMLDILEDFLEG-----EGYKYERIDGAITGSSRQEAIDRFNAPGAQ 1115
Query: 494 ARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553
+ L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1116 QFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRN 1175
Query: 554 TLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASE 589
++E + RK+ +++V GG T E
Sbjct: 1176 SVEERVTQVAKRKMMLTHLVVRPGMGGKGANFTKQE 1211
>gi|380020464|ref|XP_003694103.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein Mi-2 homolog [Apis florea]
Length = 1964
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 139/529 (26%), Positives = 238/529 (44%), Gaps = 67/529 (12%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-Y 127
++ P+Q EG ++ + GID I++ G GKT T+ FL + Y
Sbjct: 718 QLHPYQLEGLNWLRYSWGQGID---------------TILADEMGLGKTIQTITFLYSLY 762
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG 187
+ H + ++ P S ++ WE EF+ W D FY + G +++ V +
Sbjct: 763 KEGHCKGPFLVSVPLSTIINWEREFETWAPD--FYCVT---YVGDKDSRIVIRENELSFE 817
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND 247
G V R K+ S ++ +L SY +L+S D +D + V DE H +++
Sbjct: 818 EGAVRGGRASKIRSNQIKFNVLLTSY----ELISIDSACLGSIDW-AVLVVDEAHRLKSN 872
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS-LVRQEFGEVLRTVRKSGREISKA 306
+ F+ L+ +++L+GTP QNN +EL + L+ L R +F + L + +ISK
Sbjct: 873 QSKFFRLLASYNIAYKLLLTGTPLQNNLEELFHLLNFLCRDKFND-LAAFQNEFADISK- 930
Query: 307 KHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQ 366
+E++K+L E + P + + +++P +V ++ Q
Sbjct: 931 -----------------EEQVKKLHELLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQ 973
Query: 367 KRLCKAVEGVKSFVELN-----YCVSLLSV---------HPSLLPQQFFESFDVDSAKLA 412
K+ K + ++F LN VSLL++ HP L P E+ +
Sbjct: 974 KKYYKYIL-TRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAASQEAPTAPNGSYE 1032
Query: 413 RLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYM 471
L AG +L +L + +VL+FSQ + L ++ + L EG + +
Sbjct: 1033 TSALIKAAGKLVLLSKMLKKLRDDGHRVLIFSQMTKMLDILEDYLEG-----EGYKYERI 1087
Query: 472 DGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531
DG +RQ +I+ N P +Q + L ST+A GINL A V++ D WNP + QA
Sbjct: 1088 DGNITGAQRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQA 1147
Query: 532 ISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGG 580
SRA+R+GQ V +Y +T ++E + RK+ +++V GG
Sbjct: 1148 FSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGG 1196
>gi|4325130|gb|AAD17276.1| dMi-2 protein [Drosophila melanogaster]
Length = 1982
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 140/539 (25%), Positives = 238/539 (44%), Gaps = 69/539 (12%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-Y 127
++ P+Q EG ++ + GID I++ G GKT T+ FL + Y
Sbjct: 729 QLHPYQIEGINWLRYSWGQGID---------------TILADEMGLGKTIQTVTFLYSLY 773
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG 187
+ H R ++ P S L+ WE EF+ W D FY + G +++ AV +
Sbjct: 774 KEGHCRGPFLVAVPLSTLVNWEREFELWAPD--FYCIT---YIGDKDSRAVIRENELSFE 828
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND 247
G + + +L + + +L SY +L+S D +D + V DE H +++
Sbjct: 829 EGAIRGSKVSRLRTTQYKFNVLLTSY----ELISMDAACLGSIDW-AVLVVDEAHRLKSN 883
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAK 307
+ F+ L+ +++L+GTP QNN +EL + L+ +S+ K
Sbjct: 884 QSKFFRILNSYTIAYKLLLTGTPLQNNLEELFHLLNF------------------LSRDK 925
Query: 308 HASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQK 367
L + G A+ +E++K L E + P + T + +++P +V ++ QK
Sbjct: 926 FNDLQAFQGEFADVSKEEQVKRLHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVELSAMQK 985
Query: 368 RLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKLAR 413
+ K + K++ LN SL+++ HP L P E+
Sbjct: 986 KFYKFI-LTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSAAEEATTAAGGLYEI 1044
Query: 414 LKLDPEAGIKTRFLLILLEL-STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY-- 470
L AG +L +L + N +VL+FSQ + L ++ + L EG++ Y
Sbjct: 1045 NSLTKAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFL-------EGEQYKYER 1097
Query: 471 MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQ 530
+DG RQ +I+ N P +Q + L ST+A GINL A V++ D WNP + Q
Sbjct: 1098 IDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1157
Query: 531 AISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASE 589
A SRA+R+GQ V +Y +T ++E + RK+ +++V GG T E
Sbjct: 1158 AFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGANFTKQE 1216
>gi|328871058|gb|EGG19429.1| SNF2-related domain-containing protein [Dictyostelium fasciculatum]
Length = 830
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 136/501 (27%), Positives = 217/501 (43%), Gaps = 93/501 (18%)
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT--G 118
+V + K+ PHQR G EF+++ + G G G I++ G GKT
Sbjct: 243 VVDPHLSSKLRPHQRLGVEFLYQCLTGN----------KHEYGYGAILADQMGLGKTLQA 292
Query: 119 LTLVFLQAYMKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKE 173
LTL++ + +P +I+AP +++ W E W G+E
Sbjct: 293 LTLIWTMVQQNPNSSTKPMVKKVIIVAPATLIGNWRSEIITW--------------LGRE 338
Query: 174 NNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP 233
V L D + KV +K + +L +SY E+ VS L D+
Sbjct: 339 KLKPVTLSD-----KLKVSKADQLKDFGESQTDPVLIISY---EQCVSYSNQLEKLSDI- 389
Query: 234 GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-------- 285
GL + DEGH +N T A++ IK RRIILSGTP QN+ E + V
Sbjct: 390 GLLIADEGHRIKNATTKTAMAVNSIKATRRIILSGTPIQNDLYEFYAMVDFVNPGALGTP 449
Query: 286 ---RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHK 342
R++F ++ R S + K ++ SI +L + + F+ K
Sbjct: 450 NEFRRDFATPIQKSRDSNSN-QREKDQGILKSI-------------QLAKMTSSFILRRK 495
Query: 343 GTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFE 402
VL++ LP ++ + Q ++ + E + SF E ++ +S + + L +
Sbjct: 496 SNVLEKYLPLKSTQIIFCKMPSTQSKIYQ--ETINSFAEKDFSLSNIILLKKLCNSK--- 550
Query: 403 SFDVDSAKLARLKLDPEAGIKTRFLLILLE-LSTNEKVLVFSQYIEPLTLIMEQLRHRFN 461
DS KL F+ L++ L EK+++ S Y + L I E L +
Sbjct: 551 ----DSGKLL-------------FVGDLIKSLPRGEKIVLVSNYTQTLD-IFETLCKELS 592
Query: 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDV 521
+ L +DG+ + RQ I NDP+ Q ++ L S KA GINL+GA+ +VL D
Sbjct: 593 FG----FLRLDGQVEADSRQFLITKFNDPADQHKVFLLSAKAGGVGINLIGANHIVLFDP 648
Query: 522 VWNPFVERQAISRAYRLGQKR 542
WNP V+ QA+ R +R GQ++
Sbjct: 649 DWNPAVDLQAMERVWRQGQEK 669
>gi|189240851|ref|XP_001812556.1| PREDICTED: similar to chromodomain helicase-DNA-binding protein 3
[Tribolium castaneum]
Length = 1966
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 142/516 (27%), Positives = 232/516 (44%), Gaps = 68/516 (13%)
Query: 99 STGGGNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGI 157
S G G I++ G GKT T+ FL + Y + H + ++ P S ++ WE EF+ W
Sbjct: 736 SWGQGIDTILADEMGLGKTIQTITFLYSLYKEGHCKGPFLVSVPLSTIINWEREFETWAP 795
Query: 158 DIPFYNLNKPELSGKENNGAVALMDNR---KRGRGKVGLIRYVKLYSWKMGTGILGLSYR 214
D FY + G +++ AV + +N + K G I VK S K +L SY
Sbjct: 796 D--FYVIT---YVGDKDSRAV-IRENEFSFEENVSKSGRISRVKASSIKFN--VLLTSYE 847
Query: 215 LFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNN 274
L + L I + V DE H +++ + F+ L+ + +++L+GTP QNN
Sbjct: 848 LIS--IDATCLGSIEW---AVLVVDEAHRLKSNQSKFFRLLNSYNIQYKLLLTGTPLQNN 902
Query: 275 FQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKI 334
+EL + L+ + + L T + +ISK +E++K+L E +
Sbjct: 903 LEELFHLLNFLNSQKFNDLATFQNEFADISK------------------EEQVKKLHELL 944
Query: 335 APFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN-----YCVSLL 389
P + + +++P +V ++ QK+ K + ++F LN VSLL
Sbjct: 945 GPHMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYI-LTRNFEALNPKGGGQSVSLL 1003
Query: 390 SV---------HPSLLPQQFFES-------FDVDSAKLARLKLDPEAGIKTRFLLILLEL 433
++ HP L P E+ +D+ S A KL + + L IL E
Sbjct: 1004 NIMMDLKKCCNHPYLFPVAAEEAPIGPTGGYDIQSLIKASGKL----VLLAKMLRILRE- 1058
Query: 434 STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQ 493
+VL+FSQ + L ++ + L EG + +DG RQ +I+ N P +Q
Sbjct: 1059 -QGHRVLIFSQMTKMLDILEDFLEG-----EGYKYERIDGAITGSSRQEAIDRFNAPGAQ 1112
Query: 494 ARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553
+ L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1113 QFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRN 1172
Query: 554 TLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASE 589
++E + RK+ +++V GG T E
Sbjct: 1173 SVEERVTQVAKRKMMLTHLVVRPGMGGKGANFTKQE 1208
>gi|110777198|ref|XP_624414.2| PREDICTED: chromodomain-helicase-DNA-binding protein Mi-2 homolog
[Apis mellifera]
Length = 1966
Score = 139 bits (349), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 139/529 (26%), Positives = 238/529 (44%), Gaps = 67/529 (12%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-Y 127
++ P+Q EG ++ + GID I++ G GKT T+ FL + Y
Sbjct: 719 QLHPYQLEGLNWLRYSWGQGID---------------TILADEMGLGKTIQTITFLYSLY 763
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG 187
+ H + ++ P S ++ WE EF+ W D FY + G +++ V +
Sbjct: 764 KEGHCKGPFLVSVPLSTIINWEREFETWAPD--FYCVT---YVGDKDSRIVIRENELSFE 818
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND 247
G V R K+ S ++ +L SY +L+S D +D + V DE H +++
Sbjct: 819 EGAVRGGRASKIRSNQIKFNVLLTSY----ELISIDSACLGSIDW-AVLVVDEAHRLKSN 873
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS-LVRQEFGEVLRTVRKSGREISKA 306
+ F+ L+ +++L+GTP QNN +EL + L+ L R +F + L + +ISK
Sbjct: 874 QSKFFRLLASYNIAYKLLLTGTPLQNNLEELFHLLNFLCRDKFND-LAAFQNEFADISK- 931
Query: 307 KHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQ 366
+E++K+L E + P + + +++P +V ++ Q
Sbjct: 932 -----------------EEQVKKLHELLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQ 974
Query: 367 KRLCKAVEGVKSFVELN-----YCVSLLSV---------HPSLLPQQFFESFDVDSAKLA 412
K+ K + ++F LN VSLL++ HP L P E+ +
Sbjct: 975 KKYYKYIL-TRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAASQEAPTAPNGSYE 1033
Query: 413 RLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYM 471
L AG +L +L + +VL+FSQ + L ++ + L EG + +
Sbjct: 1034 TSALIKAAGKLVLLSKMLKKLRDDGHRVLIFSQMTKMLDILEDYLEG-----EGYKYERI 1088
Query: 472 DGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531
DG +RQ +I+ N P +Q + L ST+A GINL A V++ D WNP + QA
Sbjct: 1089 DGNITGAQRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQA 1148
Query: 532 ISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGG 580
SRA+R+GQ V +Y +T ++E + RK+ +++V GG
Sbjct: 1149 FSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGG 1197
>gi|442633513|ref|NP_001262078.1| Mi-2, isoform D [Drosophila melanogaster]
gi|440216038|gb|AGB94771.1| Mi-2, isoform D [Drosophila melanogaster]
Length = 1973
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 140/539 (25%), Positives = 238/539 (44%), Gaps = 69/539 (12%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-Y 127
++ P+Q EG ++ + GID I++ G GKT T+ FL + Y
Sbjct: 720 QLHPYQIEGINWLRYSWGQGID---------------TILADEMGLGKTIQTVTFLYSLY 764
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG 187
+ H R ++ P S L+ WE EF+ W D FY + G +++ AV +
Sbjct: 765 KEGHCRGPFLVAVPLSTLVNWEREFELWAPD--FYCIT---YIGDKDSRAVIRENELSFE 819
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND 247
G + + +L + + +L SY +L+S D +D + V DE H +++
Sbjct: 820 EGAIRGSKVSRLRTTQYKFNVLLTSY----ELISMDAACLGSIDW-AVLVVDEAHRLKSN 874
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAK 307
+ F+ L+ +++L+GTP QNN +EL + L+ +S+ K
Sbjct: 875 QSKFFRILNSYTIAYKLLLTGTPLQNNLEELFHLLNF------------------LSRDK 916
Query: 308 HASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQK 367
L + G A+ +E++K L E + P + T + +++P +V ++ QK
Sbjct: 917 FNDLQAFQGEFADVSKEEQVKRLHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVELSAMQK 976
Query: 368 RLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKLAR 413
+ K + K++ LN SL+++ HP L P E+
Sbjct: 977 KFYKFI-LTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSAAEEATTAAGGLYEI 1035
Query: 414 LKLDPEAGIKTRFLLILLEL-STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY-- 470
L AG +L +L + N +VL+FSQ + L ++ + L EG++ Y
Sbjct: 1036 NSLTKAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFL-------EGEQYKYER 1088
Query: 471 MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQ 530
+DG RQ +I+ N P +Q + L ST+A GINL A V++ D WNP + Q
Sbjct: 1089 IDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1148
Query: 531 AISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASE 589
A SRA+R+GQ V +Y +T ++E + RK+ +++V GG T E
Sbjct: 1149 AFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGANFTKQE 1207
>gi|307180140|gb|EFN68184.1| Chromodomain-helicase-DNA-binding protein Mi-2-like protein
[Camponotus floridanus]
Length = 1960
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 139/529 (26%), Positives = 237/529 (44%), Gaps = 67/529 (12%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-Y 127
++ P+Q EG ++ + GID I++ G GKT T+ FL + Y
Sbjct: 717 QLHPYQLEGLNWLRYSWGQGID---------------TILADEMGLGKTIQTITFLYSLY 761
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG 187
+ H + ++ P S ++ WE EF+ W D FY + G +++ V +
Sbjct: 762 KEGHCKGPFLVSVPLSTIINWEREFETWAPD--FYCVT---YVGDKDSRIVIRENELSFE 816
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND 247
G V R K+ S + +L SY +L+S D +D + V DE H +++
Sbjct: 817 EGAVRSGRASKIRSSSIKFNVLLTSY----ELISIDSACLGSIDW-AVLVVDEAHRLKSN 871
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS-LVRQEFGEVLRTVRKSGREISKA 306
+ F+ L+ +++L+GTP QNN +EL + L+ L R +F + L + +ISK
Sbjct: 872 QSKFFRLLASYNIAYKLLLTGTPLQNNLEELFHLLNFLCRDKFND-LAAFQNEFADISK- 929
Query: 307 KHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQ 366
+E++K+L E + P + + +++P +V ++ Q
Sbjct: 930 -----------------EEQVKKLHEMLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQ 972
Query: 367 KRLCKAVEGVKSFVELN-----YCVSLLSV---------HPSLLPQQFFESFDVDSAKLA 412
K+ K + ++F LN VSLL++ HP L P E+ +
Sbjct: 973 KKYYKYIL-TRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAASQEAPTGPNGSYE 1031
Query: 413 RLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYM 471
L AG +L +L + +VL+FSQ + L ++ + L EG + +
Sbjct: 1032 TSALIKAAGKLVLLSKMLKKLRDDGHRVLIFSQMTKMLDILEDYLEG-----EGYKYERI 1086
Query: 472 DGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531
DG +RQ +I+ N P +Q + L ST+A GINL A V++ D WNP + QA
Sbjct: 1087 DGNITGSQRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQA 1146
Query: 532 ISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGG 580
SRA+R+GQ V +Y +T ++E + RK+ +++V GG
Sbjct: 1147 FSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGG 1195
>gi|238883925|gb|EEQ47563.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 785
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 136/550 (24%), Positives = 243/550 (44%), Gaps = 70/550 (12%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ EG +F+++ + G GG+GC+++ G GKT +T+ +
Sbjct: 182 KVLRPHQVEGVKFMYECLMGYRGF----------GGHGCLLADEMGLGKTLMTITTIWTL 231
Query: 128 MKLHPRC-------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P + +++ P +++ W +EF+KW L + N L
Sbjct: 232 LKQNPFMEKGAVVNKVLVVCPVTLISNWRQEFRKW-------------LGANKLN---VL 275
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG-DELSGILLDLPGLFVFD 239
N K ++ + KL ++ +L ++Y EKLV+ DELS + DL V D
Sbjct: 276 TLNNPMSNEKSDILNFGKLNVYQ----VLVVNY---EKLVAHFDELSTVKFDL---LVCD 325
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS 299
EGH +N + L ++ ++I+L+GTP QN E +S + L+ +++
Sbjct: 326 EGHRLKNSANKVLNNLIKLNIPKKIVLTGTPIQNELVEFHTLISFLNPGVLPELKLFQRN 385
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI 359
I+ A I+ R +E ++L E F+ +L L ++
Sbjct: 386 F--ITPISRARDINCFDPEVKKRGEEISQQLIELTQSFILRRTQAILANYLTQKTDILLF 443
Query: 360 LQPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQ-QFFESFDVDSAKLAR 413
+ P Q +L + +K F + + + PSLL +FF+ + +
Sbjct: 444 VPPTSLQLKLFDYITNLKKFNQFEAFTMINLFKKICNSPSLLADDEFFKKIVEE-----K 498
Query: 414 LKLDPEAGIKTRFLLILLEL-STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMD 472
L +G + +LLE+ S EK+++ S Y + L L+ + LR + +D
Sbjct: 499 FNLGMASGKINILVPLLLEIASLGEKIVLISNYTKTLDLLEQVLR-----KVSLTFSRLD 553
Query: 473 GKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAI 532
G R +N N + + L S+K+ GINLVGASR++L D WNP + Q++
Sbjct: 554 GSTPNNVRNKLVNQFNT-NPDINVFLLSSKSGGMGINLVGASRLILFDNDWNPATDLQSM 612
Query: 533 SRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLE 592
SR +R GQ + +Y L T+ ++ +RQ K S+ ND T+ S+ +
Sbjct: 613 SRIHRDGQLKPCFIYRLFTTGCIDEKIFQRQLVKNKLSSKFL------DNDATSKSDVFD 666
Query: 593 DKILEEMAQL 602
+ L+ + ++
Sbjct: 667 NDDLKNIFEI 676
>gi|358058721|dbj|GAA95684.1| hypothetical protein E5Q_02341 [Mixia osmundae IAM 14324]
Length = 2010
Score = 138 bits (348), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 139/530 (26%), Positives = 227/530 (42%), Gaps = 82/530 (15%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ+EG +F+++ + G K+ G GCI++ G GKT ++ +
Sbjct: 511 KHLRPHQKEGIQFMYECVMG------FKSE-----GTGCILADEMGLGKTVQSIGLIWTL 559
Query: 128 MKLHPRC-------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K P R +I+ P +++ W EF KW G+E G V
Sbjct: 560 LKQTPYATSGSVIGRALIVCPVTLVKNWSREFSKW--------------LGRERIG-VFT 604
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
D + +K ++ +L + Y +V E + G+ + DE
Sbjct: 605 ADAKSN----------IKSFTKSKTYAVLIIGYERLRTVVEDLEKCSPPI---GVIICDE 651
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
GH ++ +AL + +R+IL+GTP QN+ EL + + + T +K
Sbjct: 652 GHRLKSAGAKTTQALRALSAEKRVILTGTPIQNDLSELHTMVDFIIPGALDSYATFKKCF 711
Query: 301 R-EISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI 359
I K++ S + R D+ L FV V+ + LP + V+
Sbjct: 712 EVPILKSREPHASSEVRGLGQARSDQ----LASIARSFVLRRTSEVIAQFLPPKQEYVLF 767
Query: 360 LQPDEFQKRLCK------AVEGVKSFVELNYCVSL-----LSVHPSLLPQQFFESF--DV 406
++P + Q RL K AV + S N+ V + L P LL +Q + D
Sbjct: 768 VRPTQLQIRLYKKILETPAVRAIFSGKGGNHLVLISALKKLCNSPGLLVKQLDQQHVKDA 827
Query: 407 DSAKLARLKLDPEAGI---------KTRFLLILLEL---STNEKVLVFSQYIEPLTLIME 454
+ + + +G+ K L LLE T EKV++ S + + L ++
Sbjct: 828 EDEVTESIAEELPSGLDVNDVHLSGKALALANLLESIKEKTEEKVVLVSNFTQTLNILEA 887
Query: 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR-IMLASTKACCEGINLVGA 513
+ R R G +DG K RQ + N S +A+ I L S+K+ G+NL+GA
Sbjct: 888 FCKTR---RYG--YCRLDGATAQKARQGIVETFNRASQKAQFIFLLSSKSGGAGLNLIGA 942
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQ 563
SR+VL D WNP + QA++R +R GQKR H+Y L+ + TL+ +RQ
Sbjct: 943 SRLVLFDSDWNPSNDLQAMARIHRDGQKRPCHIYRLLATGTLDEKIFQRQ 992
>gi|403420600|ref|NP_001258155.1| chromodomain-helicase-DNA-binding protein 5 [Rattus norvegicus]
Length = 1948
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 150/567 (26%), Positives = 255/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 698 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 742
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 743 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 801
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
G KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 802 GGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 851
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 852 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 911
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 912 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 953
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 954 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPML 1007
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 1008 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1062
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1063 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1122
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1123 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1182
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1183 TKQE-LDDILKFGTEELFKDDVEGMMS 1208
>gi|383851360|ref|XP_003701201.1| PREDICTED: chromodomain-helicase-DNA-binding protein Mi-2 homolog
[Megachile rotundata]
Length = 1967
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 139/529 (26%), Positives = 238/529 (44%), Gaps = 67/529 (12%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-Y 127
++ P+Q EG ++ + GID I++ G GKT T+ FL + Y
Sbjct: 720 QLHPYQLEGLNWLRYSWGQGID---------------TILADEMGLGKTIQTITFLYSLY 764
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG 187
+ H + ++ P S ++ WE EF+ W D FY + G +++ V +
Sbjct: 765 KEGHCKGPFLVSVPLSTIINWEREFETWAPD--FYCVT---YVGDKDSRIVIRENELSFE 819
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND 247
G V R K+ S ++ +L SY +L+S D +D + V DE H +++
Sbjct: 820 EGAVRGGRASKIRSNQIKFNVLLTSY----ELISIDSACLGSIDW-AVLVVDEAHRLKSN 874
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS-LVRQEFGEVLRTVRKSGREISKA 306
+ F+ L+ +++L+GTP QNN +EL + L+ L R +F + L + +ISK
Sbjct: 875 QSKFFRLLASYNIAYKLLLTGTPLQNNLEELFHLLNFLCRDKFND-LAAFQNEFADISK- 932
Query: 307 KHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQ 366
+E++K+L E + P + + +++P +V ++ Q
Sbjct: 933 -----------------EEQVKKLHELLGPHMLRRLKADVLKNMPSKSEFIVRVELSPMQ 975
Query: 367 KRLCKAVEGVKSFVELN-----YCVSLLSV---------HPSLLPQQFFESFDVDSAKLA 412
K+ K + ++F LN VSLL++ HP L P E+ +
Sbjct: 976 KKYYKYIL-TRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAASQEAPTAPNGTYE 1034
Query: 413 RLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYM 471
L AG +L +L + +VL+FSQ + L ++ + L EG + +
Sbjct: 1035 TSALIKAAGKLVLLSKMLRKLRDDGHRVLIFSQMTKMLDILEDYLEG-----EGYKYERI 1089
Query: 472 DGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531
DG +RQ +I+ N P +Q + L ST+A GINL A V++ D WNP + QA
Sbjct: 1090 DGNITGAQRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQA 1149
Query: 532 ISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGG 580
SRA+R+GQ V +Y +T ++E + RK+ +++V GG
Sbjct: 1150 FSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGG 1198
>gi|254585925|ref|XP_002498530.1| ZYRO0G12474p [Zygosaccharomyces rouxii]
gi|238941424|emb|CAR29597.1| ZYRO0G12474p [Zygosaccharomyces rouxii]
Length = 901
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 145/576 (25%), Positives = 251/576 (43%), Gaps = 82/576 (14%)
Query: 66 VRKKMFPHQREGFEFIWKNIAG------GIDLDE----LKNSTSTGGGNGCIISHAPGTG 115
+ K + PHQR+G +F++ + G GID L+N + GCI++ G G
Sbjct: 232 LSKLLRPHQRDGVKFMYDCVMGLARPDDGIDTASKSLVLENDSDI---QGCILADEMGLG 288
Query: 116 KTGLTLVFLQAYMKLHPR----------------CRPVII-APRSMLLTWEEEFKKWGID 158
KT +T+ + +K P C+ +II P +++ W+ EF KW
Sbjct: 289 KTLMTITLIWTLLKQTPMASKVSCSQNGVPLQGLCKKIIIVCPVTLIANWKREFGKW--- 345
Query: 159 IPFYNLNKPELS--GKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLF 216
NL++ + +NN + D + +R + Y I+G +
Sbjct: 346 ---LNLSRIGILTLSPQNNAERDIYDVK-------SFLRVQRTYQ----VLIIG-----Y 386
Query: 217 EKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQ 276
EKL+S + +L L V DEGH +N + + L ++ R+IILSGTP QN+
Sbjct: 387 EKLLSVAQELENGKNLIDLLVCDEGHRLKNGSSKVLNILKNLEIPRKIILSGTPIQNDLN 446
Query: 277 ELENTLSLVRQE-FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIA 335
E + + G ++ I+KA+ + + + E+ +E+
Sbjct: 447 EFFTIIDFINPGVLGSYPFFKKRFMTPITKARDPA--NRFNLHVVEKGQERSEEMISITR 504
Query: 336 PFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV-EGVK-SFVELNYCVSLLSV-- 391
F+ ++L + LP ++ +P Q K + +G LN+ SL +
Sbjct: 505 RFILRRTNSILSKYLPPKMDIILFCKPTNHQISAFKDILQGANIDLQRLNFNSSLALITL 564
Query: 392 ------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----STNEKVLV 441
P+L+ + + ++++++ + K R L+ LL +T++KV+V
Sbjct: 565 LKKICNSPTLIQTDSYYKSSMQNSRISQKYQNEYNSGKLRVLMKLLNQIKIETTSDKVVV 624
Query: 442 FSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLAS 500
S Y + L +I G +DG K+R + +N N +PS A L S
Sbjct: 625 ISNYTQTLDII-----ENLMASAGMSSCRLDGSTPAKQRDAIVNNFNHNPSIFA--FLLS 677
Query: 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKL 560
K+ G+NL+GA R++L D WNP V+ QA+SR +R GQK+ ++Y L+T+ ++ L
Sbjct: 678 AKSGGVGLNLIGACRLILFDNDWNPSVDLQAMSRIHRDGQKKPCYIYRLVTTGCIDEKIL 737
Query: 561 RRQARKVWWSNMVFP---SSDGGGNDQTTASEPLED 593
+RQ K S S+ G +D E L+D
Sbjct: 738 QRQLMKNCLSQKFLSDTKSTKGSADDDLFNKEDLKD 773
>gi|320583294|gb|EFW97509.1| helicase [Ogataea parapolymorpha DL-1]
Length = 794
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 137/530 (25%), Positives = 228/530 (43%), Gaps = 79/530 (14%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ+EG +F+++ + G D D G+G +++ + G GKT T+ + +K
Sbjct: 189 PHQKEGVKFMYECVMGFRDYD----------GHGVLLADSMGLGKTLQTIALVWTLLKQS 238
Query: 132 PRC-------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNR 184
P + +I P ++++ W++EF+KW + ++ L+G NN +
Sbjct: 239 PVAGDAPVARKVLICCPVTLVMNWKKEFRKW---LGPNRVSILALNGSSNNDKQNIQGFA 295
Query: 185 KRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTP 244
V +I Y K+ L D++ I DL V DEGH
Sbjct: 296 NTNVYHVMIIGYEKM-------------------LTVADDVGCIKFDL---VVCDEGHRL 333
Query: 245 RNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGEVLRTVRKSGREI 303
++ + K L + + R++LSGTP QN+ E N + V G+ R R I
Sbjct: 334 KSGSNKVLKVLESLDIKHRVLLSGTPIQNDLTEFYNVANFVNPGVLGDFKSFQRSYMRPI 393
Query: 304 SKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPD 363
+A+ A+ ++ +L EL +K + + T + LP V+ P
Sbjct: 394 LRAREANCTNAAVLEQGEAASRELIELTKKFTLRRTIEEIT---KFLPRRSDYVLFAPPT 450
Query: 364 EFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFD---------VDSAKLARL 414
+ Q RL ++++ F ++ LS P+ Q +F + A A L
Sbjct: 451 KLQIRLFESLQKTAQFSKI------LSAAPANDSLQLITTFRKICNSPALLTEDAMFAGL 504
Query: 415 ----KLDPEAGIKTRFLLILLELS--------TNEKVLVFSQYIEPLTLIMEQLRHRFNW 462
L E G K R I+L + EKV+V S + + L ++E+L +
Sbjct: 505 CGVDDLRGELGSKVRSAKIILLVKLLKGIYKLKQEKVVVVSNFTQTLD-VLEKLMNVLEL 563
Query: 463 REGQEVLYMDGKQDVKKRQSSINVLNDPS-SQARIMLASTKACCEGINLVGASRVVLLDV 521
+DG R ++ N S + + L S K+ G+NLVGASR++L D
Sbjct: 564 ----PFTRLDGATPANLRDKIVSDFNKASWDMSFVFLLSAKSGGMGLNLVGASRLILFDN 619
Query: 522 VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSN 571
WNP V+ QA++R +R GQ R VHVY L+T+ ++ +RQ K S+
Sbjct: 620 DWNPAVDLQAMARVHRDGQTRPVHVYRLLTAGCIDEKIFQRQLIKTSLSD 669
>gi|345793211|ref|XP_850491.2| PREDICTED: DNA repair and recombination protein RAD54B isoform 8
[Canis lupus familiaris]
Length = 744
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 156/585 (26%), Positives = 237/585 (40%), Gaps = 120/585 (20%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ+EG F+++ + G G G I++ G GKT + +
Sbjct: 131 PHQKEGIMFLYECVMG----------MRVNGRCGAILADEMGLGKTLQCISLIWTLQCQG 180
Query: 132 PRC-RPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRK 185
P +PV I+ P S++ W +EF+KW G E + + K
Sbjct: 181 PYGGKPVVKKTLIVTPGSLVNNWRKEFQKW--------------LGSERIKIFPVDQDHK 226
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPR 245
V+ ++ +L +SY + L S D++ + GL + DEGH +
Sbjct: 227 -----------VEEFTRSPFYSVLIISYEML--LRSLDQIKNVKF---GLLICDEGHRLK 270
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE--- 302
N AL + +R+IL+GTP QN+ QE + V L RK E
Sbjct: 271 NSAIKTTAALISLSCEKRVILTGTPVQNDLQEFFALIDFVNPGILGSLSFYRKVYEEPII 330
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG--------TVLQESLPGLR 354
IS+ AS E+ K+L EK A + G V+ + LP
Sbjct: 331 ISRQPSAS--------------EEEKKLGEKRAVELTCLTGLFILRRTQEVINKYLPPKI 376
Query: 355 HSVVILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSV---HPSLL----- 396
+VV +P Q L + ++G+ C+ L HP LL
Sbjct: 377 ENVVFCRPGALQIELYRKLLNSQAVRFCLQGLLGNSPHLICIGALKKLCNHPCLLFNSIK 436
Query: 397 ------------PQQFFESF-DVDSAKLARLKLDPEAGIKTRFLLILL----ELSTNEKV 439
+ +E+ DV A L E K + LL LL EL EKV
Sbjct: 437 EKECSSTWDGKEEKSLYEALLDVFPADYNPLMFSEEESGKLQVLLKLLAVIHELRPTEKV 496
Query: 440 LVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
++ S Y + L ++ E + R G +DG+ V +RQ ++ N S I L
Sbjct: 497 VLVSNYTQTLDILQEVCK-----RHGYTYTRLDGQTPVSQRQQIVDSFNSKYSSDFIFLL 551
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
S+KA G+NL+G S ++L D+ WNP + QA+SR +R GQK VH+Y L+T+ T+E
Sbjct: 552 SSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKNPVHIYRLLTTGTIEEKI 611
Query: 560 LRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYN 604
+RQ K S V D T SE ++ + EE+ L+
Sbjct: 612 YQRQISKQDLSGAVV--------DLTRTSEHIQFSV-EELKNLFT 647
>gi|124487025|ref|NP_001074845.1| chromodomain helicase DNA binding protein 5 isoform 1 [Mus musculus]
Length = 1952
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 150/567 (26%), Positives = 255/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 702 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 746
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 747 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 805
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
G KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 806 GGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 855
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 856 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 915
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 916 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 957
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 958 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 1011
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 1012 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1066
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1067 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1126
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1127 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1186
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1187 TKQE-LDDILKFGTEELFKDDVEGMMS 1212
>gi|145512399|ref|XP_001442116.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124409388|emb|CAK74719.1| unnamed protein product [Paramecium tetraurelia]
Length = 1659
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 133/523 (25%), Positives = 241/523 (46%), Gaps = 79/523 (15%)
Query: 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLN 165
I++ G GKT T+ FL P ++IAP S L W+ ++W NLN
Sbjct: 570 ILADEMGLGKTIQTIAFLNHLYNFENYRGPFLVIAPLSTLQHWKRTVEEWT------NLN 623
Query: 166 KPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225
+E+N L + + + + S IL SY +F + +
Sbjct: 624 AVLYYDQESNAGRQLCRQYEFFYTDISMKGILLTASEIYKFQILITSYEVFMQ-----DF 678
Query: 226 SGILLDLPGLF-VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
I +++P + V DE H +N + + ++L R+ +R ++L+GTP QNN +EL + L+
Sbjct: 679 QNIFINIPFQYIVVDEAHKLKNSNARILQSLKRLSCQRTLLLTGTPIQNNTEELFSLLNF 738
Query: 285 VR-QEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
+ +F + R G+ L +S +++ L + P++ +
Sbjct: 739 IEPNQFCNLNYFKRDYGQ---------LETS----------DQVDRLNVLLKPYILRRQK 779
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAV-EGVKSFVELNY------CVSLLSV----- 391
+++ +P L+ +++ ++ QK + KA+ + KS +E + SL ++
Sbjct: 780 EDVEQMIPPLQETIIDIEMTTVQKHIYKALYDRNKSMLEQGFSQWAANAASLNNLEIQLR 839
Query: 392 ----HPSLLPQQFFESFDVDSAKLARLKLDP-EAGIKTRFLLILLE------LSTNEKVL 440
HP L+ + D +K + K+D +++ +ILL+ S +K+L
Sbjct: 840 KCCNHPFLI-----QEMQNDLSKGCQTKIDYINKLVESSGKMILLDKLLNKFRSEGKKML 894
Query: 441 VFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIML 498
+FSQ+ L+++ E L+ + +V Y +DG+ ++R ++I+ NDPS + + L
Sbjct: 895 IFSQFTMMLSILEEYLKFK-------QVKYEKIDGQIKARERSNAIDRFNDPSKKREVFL 947
Query: 499 ASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWD 558
STKA +GINL A VV+ D WNP + QA +RA+R+GQ + V VY LIT +T E +
Sbjct: 948 LSTKAGGQGINLTAAEIVVIYDSDWNPQNDVQATARAHRIGQSKEVTVYRLITKDTYEAE 1007
Query: 559 KLRRQARKVWWSNMVF---------PSSDGGGNDQTTASEPLE 592
R +K+ +F S ND+ + + +E
Sbjct: 1008 MFERAIKKLGLDQAIFMNGQFKSCENSYKSNKNDKKMSKQDME 1050
>gi|119494890|ref|XP_001264246.1| dsDNA-dependent ATPase (Rad54b), putative [Neosartorya fischeri
NRRL 181]
gi|119412408|gb|EAW22349.1| dsDNA-dependent ATPase (Rad54b), putative [Neosartorya fischeri
NRRL 181]
Length = 969
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 146/543 (26%), Positives = 224/543 (41%), Gaps = 89/543 (16%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQREG +F+++ + G + G G I++ G GKT T+ L
Sbjct: 284 KHLRQHQREGVQFLYECVMGMRSFN----------GEGAILADDMGLGKTLQTITLLWTL 333
Query: 128 MKLHP--RCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P PVI + P +++ W +EF+KW G E G
Sbjct: 334 LKQNPIHESPPVIKKALIVCPVTLINNWRKEFRKW--------------LGNERIGVFVF 379
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTG----ILGLSYRLFEKLVSGDE--LSGILLDLPG 234
D RKR L + MG I+G +EKL + E G +D+
Sbjct: 380 DDKRKR------------LTDFTMGRAYSVMIVG-----YEKLRTVQEGLARGAGVDI-- 420
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGEVL 293
+ DEGH + +A+ + +RIILSGTP QN+ +E + LV G
Sbjct: 421 -IIADEGHRLKTLQNKSGQAIQSLNATKRIILSGTPIQNDLKEFFAAVDLVNPGILGNFK 479
Query: 294 RTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGL 353
VR+ I K++ R++E L+EL K F+ +L + LP
Sbjct: 480 AFVREFEGPIVKSRQPEATKKEIEKGEARNEE-LRELTSK---FMLRRTADILAKYLPPK 535
Query: 354 RHSVVILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSVHPSLL------- 396
V+ P Q + K A+ ++ ++L + L PSLL
Sbjct: 536 TEYVLFCNPTSTQANIYKNVLASPVFQCAIGNSENALQLITILKKLCNSPSLLSPKTGDE 595
Query: 397 -PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPLTLI 452
P + + P K R L LL ST+EK+++ S Y L ++
Sbjct: 596 KPSETIAALLSSLPPNLLRHFSPSCSAKIRVLDQLLHNLRTSTSEKIVLVSNYTSTLNML 655
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND-PSSQARIMLASTKACCEGINLV 511
L L +DG +KRQ+ + N P + L S KA G+NL+
Sbjct: 656 ANLLNSLS-----LPFLRLDGSTPAQKRQALVEDFNRLPPNLCFAFLLSAKAGGTGLNLI 710
Query: 512 GASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSN 571
GASR+VL DV WNP + QA++R +R GQKR +Y ++ +LE +RQ K+ ++
Sbjct: 711 GASRLVLFDVDWNPATDVQAMARIHRDGQKRHCWIYRVLLKGSLEERIWQRQVTKIGLAD 770
Query: 572 MVF 574
V
Sbjct: 771 SVM 773
>gi|255725568|ref|XP_002547713.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240135604|gb|EER35158.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 847
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 150/625 (24%), Positives = 282/625 (45%), Gaps = 80/625 (12%)
Query: 4 IKDIDPPFATSPSRRAEWREYNNVDPSFLDDLNSRDSGFDSQTGCDPFTHAQGT---VWE 60
+K + P T+ + ++++ P++++ SR + +D GT V
Sbjct: 157 LKRVSPVPTTTENATNQFKKV--APPTYVERPTSRKAMYDDNPSAISLPPPPGTSNFVKV 214
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
+ + K+ HQ EG F+++ + G D G+GC+++ G GKT +T
Sbjct: 215 NIDPLLATKLRHHQIEGVTFMYECLMGYRDFQ----------GHGCLLADEMGLGKTLMT 264
Query: 121 LVFLQAYMKLHP---RCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGK 172
+ + +K +P + +PVI + P +++ W +EFKKW L +L+
Sbjct: 265 ITTIWTLLKQNPFPEQKKPVINKVLVVCPATLISNWRQEFKKW--------LGANKLNVL 316
Query: 173 ENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL-VSGDELSGILLD 231
N A M + KR ++ + KL ++ +L ++Y EK+ + +ELS I D
Sbjct: 317 TLNNA---MSDEKRD-----ILNFGKLNVYQ----VLVVNY---EKITIHYEELSTIKFD 361
Query: 232 LPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGE 291
L V DEGH +N + L ++ ++I+L+GTP QN E +S +
Sbjct: 362 L---LVCDEGHRLKNSANKVLNHLIKLNIPKKIVLTGTPIQNELIEFHTLISFLNPGVLP 418
Query: 292 VLRTV-RKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESL 350
L+T R IS+A+ ++ R +E ++L + F+ ++L + L
Sbjct: 419 ELKTFQRNYVNPISRARD---VNCFDPEVKRRGEEISQQLIGLTSQFILRRTQSILSKYL 475
Query: 351 PGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY---CVSLLSV------HPSLLPQQFF 401
++ + P + Q +L K + +K F ++N +L+++ PSLL F
Sbjct: 476 TTKTDILLFVPPSDLQVKLFKYITNLKKFNQINSGSDSFTLINLFKKICNSPSLLIDDAF 535
Query: 402 ESFDVDSAKLARLKLDPEAGIKTRFLLILLEL-STNEKVLVFSQYIEPLTLIMEQLRHRF 460
V+ + L +G + +LLE+ + EK+++ S Y + L L +E++ +
Sbjct: 536 FKRIVEE----KFHLTLSSGKINVLIPLLLEIVAQKEKIVLISNYTQTLDL-LEKVLSKI 590
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
N + +DG R + N + + L S+K+ GINLVGASR++L D
Sbjct: 591 NLTFSR----LDGSTATNIRSKIVKQFNS-NPNIHVFLLSSKSGGMGINLVGASRLILFD 645
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGG 580
WNP + Q++SR +R GQ + +Y + T+ ++ +RQ K S+
Sbjct: 646 NDWNPATDLQSMSRIHRDGQTKPCFIYRIFTTGCIDEKIFQRQLVKNRLSSKFL------ 699
Query: 581 GNDQTTASEPLEDKILEEMAQLYNN 605
ND ++ S+ ++ L+ + ++ N
Sbjct: 700 DNDSSSKSDIFDESDLKNIFEVDTN 724
>gi|149024737|gb|EDL81234.1| rCG30890, isoform CRA_a [Rattus norvegicus]
Length = 1668
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 150/567 (26%), Positives = 255/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 426 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 470
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 471 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 529
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
G KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 530 GGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 579
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 580 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 639
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 640 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 681
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 682 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFP-----VAAVEAPML 735
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 736 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 790
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 791 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 850
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 851 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 910
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 911 TKQE-LDDILKFGTEELFKDDVEGMMS 936
>gi|195128581|ref|XP_002008741.1| GI13663 [Drosophila mojavensis]
gi|193920350|gb|EDW19217.1| GI13663 [Drosophila mojavensis]
Length = 1992
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 140/551 (25%), Positives = 238/551 (43%), Gaps = 85/551 (15%)
Query: 65 DVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFL 124
D ++ P+Q EG ++ + GID I++ G GKT T+ FL
Sbjct: 716 DTGMQLHPYQIEGINWLRYSWGQGID---------------TILADEMGLGKTIQTVTFL 760
Query: 125 QA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDN 183
+ Y + H R ++ P S L+ WE EF+ W D FY + G +++ AV +
Sbjct: 761 YSLYKEGHCRGPFLVAVPLSTLVNWEREFELWAPD--FYCIT---YIGDKDSRAVIRENE 815
Query: 184 RKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGL-------F 236
G + + +L + + +L SY L I +D P L
Sbjct: 816 LTFEEGAIRGTKVSRLRTTQYKFNVLLTSYEL------------ISMDAPCLGSIDWAVL 863
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTV 296
V DE H +++ + F+ L+ +++L+GTP QNN +EL + L+
Sbjct: 864 VVDEAHRLKSNQSKFFRILNSYSIAYKLLLTGTPLQNNLEELFHLLNF------------ 911
Query: 297 RKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHS 356
+S+ K L + G A+ +E++K L E + P + T + +++P
Sbjct: 912 ------LSREKFNDLQAFQGEFADVSKEEQVKRLHEMLGPHMLRRLKTDVLKNMPSKSEF 965
Query: 357 VVILQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFE 402
+V ++ QK+ K + K++ LN SL+++ HP L P E
Sbjct: 966 IVRVELSAMQKKFYKFI-LTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSGS-E 1023
Query: 403 SFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQLRHRF 460
+ + + +A K L +L+ + +VL+FSQ + L ++ + L
Sbjct: 1024 DAPTSAGGIYEINSLTKAAGKLVLLSKMLKQLKAQGHRVLIFSQMTKMLDILEDFL---- 1079
Query: 461 NWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVL 518
EG++ Y +DG RQ +I+ N P +Q + L ST+A GINL A V++
Sbjct: 1080 ---EGEQYKYERIDGSITGTVRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVII 1136
Query: 519 LDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
D WNP + QA SRA+R+GQ V +Y +T ++E + RK+ +++V
Sbjct: 1137 YDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGM 1196
Query: 579 GGGNDQTTASE 589
GG T E
Sbjct: 1197 GGKGANFTKQE 1207
>gi|148230804|ref|NP_001085120.1| RAD54 homolog B [Xenopus laevis]
gi|47939775|gb|AAH72215.1| MGC81308 protein [Xenopus laevis]
Length = 895
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 144/542 (26%), Positives = 231/542 (42%), Gaps = 90/542 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ+EG F+++ + G G I++ G GKT + + ++
Sbjct: 281 PHQKEGILFLYECVMG----------MRVNERFGAILADEMGLGKTLQCISLIWTLLRQG 330
Query: 132 PRC------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRK 185
P R +I+ P S++ W +EF+KW G E A+ + K
Sbjct: 331 PYGAKPVIKRALIVTPGSLVKNWRKEFQKW--------------LGTERIRVFAVDQDHK 376
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPR 245
V LYS +L +SY + + + +++ + DL + DEGH +
Sbjct: 377 -----VEEFVNSPLYS------VLIISYEMLLRCL--EQIESLDFDL---VICDEGHRLK 420
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE-IS 304
N +L+ + +RIILSGTP QN+ QE + V L T RK E I
Sbjct: 421 NTSIKTTTSLTSLTCSKRIILSGTPVQNDLQEFFALIEFVNPAVLGSLSTYRKVFEEPIV 480
Query: 305 KAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDE 364
+++ + + +E+ EL F+ V+ + LP ++V QP +
Sbjct: 481 RSREPTATPE----EKNLGEERAAELARLTGLFILRRTQEVINKFLPPKIENIVFCQPSQ 536
Query: 365 FQKRLCKAV---EGVKSFVELN-------YCVSLLSV---HPSLL----------PQQ-- 399
FQ L + + VKS + N C+ L HP LL P Q
Sbjct: 537 FQLDLYRRLLNSRAVKSCLLGNGENSPHLVCIGALKKLCNHPCLLFRTIQEKSTNPDQGE 596
Query: 400 --FFESF------DVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTL 451
+ES D D AK++ + + I ELS +E+V++ S Y + L +
Sbjct: 597 HSLYESIAELFPQDYDGAKISESESGKLLVLSKLLSGIR-ELSPSERVVLVSHYTQTLNI 655
Query: 452 IMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLV 511
+ + G +DG+ V +RQ ++ N S I L S+KA G+NL+
Sbjct: 656 L-----QALCVQHGYSCTRLDGQTPVTQRQHIVDGFNSKYSSDFIFLLSSKAGGVGLNLI 710
Query: 512 GASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSN 571
GAS ++L D+ WNP + QA++R +R GQ+R VH+Y L+T+ +LE +RQ K S
Sbjct: 711 GASHLILYDIDWNPANDIQAMARVWRDGQRRTVHIYRLLTTGSLEEKIYQRQISKQGLSG 770
Query: 572 MV 573
V
Sbjct: 771 AV 772
>gi|242023203|ref|XP_002432025.1| DNA repair and recombination protein RAD54B, putative [Pediculus
humanus corporis]
gi|212517383|gb|EEB19287.1| DNA repair and recombination protein RAD54B, putative [Pediculus
humanus corporis]
Length = 840
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 136/527 (25%), Positives = 231/527 (43%), Gaps = 83/527 (15%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+ + KK+ HQ EG F++++I G D++ NG I++ G GKT +
Sbjct: 244 IEESLSKKLRQHQLEGIIFLYESIMGYKDINY----------NGVILADEMGLGKTLQCI 293
Query: 122 VFLQAYMKLHPRC------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENN 175
+ +K P R +I+ P S+++ W EF KW
Sbjct: 294 SLIWTLLKQGPYNKKPVIKRVLIVTPTSLIMNWYNEFIKWL------------------- 334
Query: 176 GAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGL 235
G V ++ + K I+Y ++ +SY + + V+ ++ L
Sbjct: 335 GRVKIVPYVVNQKNKPSEIKY---------HSVVIISYEMLIRCVNN-----VMEHNVDL 380
Query: 236 FVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRT 295
V DE H +N + + L+++ +++I+L+GTP QN+ QEL +L+ +L +
Sbjct: 381 LVCDEAHRIKNSNIKTAQVLNQLNCKKKILLTGTPLQNDLQEL---YTLIDFANPNILGS 437
Query: 296 VRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRH 355
+ + + AS + +E+ LK+ I F+ +L+ LP
Sbjct: 438 PSQFRIQFADPIIASRQPDSNEDVVKKGNERSINLKKIINKFLLRRTRNILKNYLPPRHD 497
Query: 356 SVVILQPDEFQKRLCKA--------------VEGVKSFVELNYCVSLLSVHPSLLPQ--Q 399
VV + E Q+ + + +EG S +EL + + +PSLL +
Sbjct: 498 IVVFCKITEPQRNMYNSLVNSFLNAKESEEFIEG-SSHLELITSLKKICNYPSLLNKDDN 556
Query: 400 FFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR 459
+ E D+D++ +LK + FL L S EKVL+ S + L L +E++ H
Sbjct: 557 YLEKIDIDTS--GKLK------VTVNFLKELQMTSVKEKVLIVSNATQTLNL-LEKVFHV 607
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
N+ + +DG +R + N S I L S+KA G+N+ GASR++L
Sbjct: 608 LNYSTCR----LDGNTPSAQRNKIVEDFN-TSRDLFIFLLSSKAGGVGLNVTGASRLILF 662
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
D WNP + QAISR +R GQK V +Y L+T+ T+E +RQ K
Sbjct: 663 DSDWNPATDLQAISRIWRDGQKFPVFIYRLLTTGTIEEKIYQRQISK 709
>gi|68477713|ref|XP_717169.1| hypothetical protein CaO19.5367 [Candida albicans SC5314]
gi|68477876|ref|XP_717090.1| hypothetical protein CaO19.12827 [Candida albicans SC5314]
gi|46438788|gb|EAK98114.1| hypothetical protein CaO19.12827 [Candida albicans SC5314]
gi|46438870|gb|EAK98195.1| hypothetical protein CaO19.5367 [Candida albicans SC5314]
Length = 796
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 136/551 (24%), Positives = 242/551 (43%), Gaps = 72/551 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQ EG +F+++ + G GG+GC+++ G GKT +T+ +
Sbjct: 193 KVLRPHQVEGVKFMYECLMGYRGF----------GGHGCLLADEMGLGKTLMTITTIWTL 242
Query: 128 MKLHPRC-------RPVIIAPRSMLLTWEEEFKKW--GIDIPFYNLNKPELSGKENNGAV 178
+K +P + +++ P +++ W +EF+KW + LN P
Sbjct: 243 LKQNPFMEKGAVVNKVLVVCPVTLISNWRQEFRKWLGANKLNVLTLNNP----------- 291
Query: 179 ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG-DELSGILLDLPGLFV 237
M N K+ ++ + KL ++ +L ++Y EKLV+ DELS + DL V
Sbjct: 292 --MSNEKQD-----ILNFGKLNVYQ----VLVVNY---EKLVAHFDELSAVKFDL---LV 334
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DEGH +N + L ++ ++I+L+GTP QN E +S + L+ +
Sbjct: 335 CDEGHRLKNSANKVLNNLIKLNIPKKIVLTGTPIQNELVEFHTLISFLNPGVLPELKLFQ 394
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
++ I+ A I+ R +E ++L E F+ +L L +
Sbjct: 395 RNF--ITPISRARDINCFDPEVKKRGEEISQQLIELTQSFILRRTQAILANYLTQKTDIL 452
Query: 358 VILQPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQQFFESFDVDSAKLA 412
+ + P Q +L + +K F + + + PSLL V+
Sbjct: 453 LFVPPTSLQLKLFDYITNLKKFNQFEAFTMINLFKKICNSPSLLADDELFKKIVEE---- 508
Query: 413 RLKLDPEAGIKTRFLLILLEL-STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYM 471
+ L +G + +LLE+ S EK+++ S Y + L L+ + LR + +
Sbjct: 509 KFNLGMASGKINILVPLLLEIASLGEKIVLISNYTKTLDLLEQVLR-----KVSLTFSRL 563
Query: 472 DGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531
DG R +N N + + L S+K+ GINLVGASR++L D WNP + Q+
Sbjct: 564 DGSTPNNVRSKLVNQFNT-NPDINVFLLSSKSGGMGINLVGASRLILFDNDWNPATDLQS 622
Query: 532 ISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPL 591
+SR +R GQ + +Y L T+ ++ +RQ K S+ ND T+ S+
Sbjct: 623 MSRIHRDGQLKPCFIYRLFTTGCIDEKIFQRQLVKNKLSSKFL------DNDATSKSDVF 676
Query: 592 EDKILEEMAQL 602
++ L+ + ++
Sbjct: 677 DNDDLKNIFEI 687
>gi|300794189|ref|NP_001179884.1| DNA repair and recombination protein RAD54B [Bos taurus]
gi|296480441|tpg|DAA22556.1| TPA: RAD54 homolog B [Bos taurus]
Length = 909
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 145/568 (25%), Positives = 233/568 (41%), Gaps = 107/568 (18%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ+EG F+++ + G G G I++ G GKT + +
Sbjct: 298 PHQKEGITFLYECVMG----------MRVNGRCGAILADEMGLGKTLQCISLIWTLQCQG 347
Query: 132 PRC------RPVIIAPRSMLLTWEEEFKKW-GID-IPFYNLNKPELSGKENNGAVALMDN 183
P + +I+ P S++ W++EF+KW GI+ I + +++
Sbjct: 348 PYGGKPIVKKTLIVTPGSLVNNWKKEFQKWLGIERIKIFTVDQDH--------------- 392
Query: 184 RKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHT 243
KV YS +L +SY + L S D++ + DL + DEGH
Sbjct: 393 ------KVEEFTKSPFYS------VLIISYEML--LRSLDQIKNVKFDL---LICDEGHR 435
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE- 302
+N AL + +RIIL+GTP QN+ QE + V L RK E
Sbjct: 436 LKNSTIKTTTALISLSCEKRIILTGTPVQNDLQEFFTLIDFVNPGILGSLSAYRKIYEEP 495
Query: 303 --ISKAKHASLISSIGRCANHRD--DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
IS+ AS R+ +++ EL F+ V+ + LP +VV
Sbjct: 496 IIISRQPSAS--------EEERELGEQRAAELTCLTGLFILRRTQEVINQYLPPKIENVV 547
Query: 359 ILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSV---HPSLL--------- 396
+P Q L + ++G+ C+ L HP LL
Sbjct: 548 FCRPGALQIALYRKLLNSQAVRFCLQGLLENTSHLICIGALKKLCNHPCLLFGSIKEKES 607
Query: 397 --------PQQFFES----FDVDSAKLARLKLDPEAG---IKTRFLLILLELSTNEKVLV 441
+ +E F D + + + E+G + ++ L ++ EL EKV++
Sbjct: 608 NSTWDESEERNLYEGLMNVFPADYNPI--MFTEEESGKLQVLSKLLAVIRELRPAEKVVL 665
Query: 442 FSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAST 501
S Y L ++ E + R G +DG+ + +RQ ++ N S I L S+
Sbjct: 666 VSNYTRTLDILQEVCK-----RHGYAYTRLDGQTPISQRQQIVDGFNSKYSSDFIFLLSS 720
Query: 502 KACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561
KA G+NL+G S ++L D+ WNP + QA+SR +R GQK VH+Y L+T+ T+E +
Sbjct: 721 KAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQ 780
Query: 562 RQARKVWWSNMVFPSSDGGGNDQTTASE 589
RQ K S V S + Q + E
Sbjct: 781 RQISKQGLSGAVVDLSKTSDHIQFSVEE 808
>gi|441474496|emb|CCQ24250.1| Uncharacterized ATP-dependent helicase MG018 [Listeria
monocytogenes N53-1]
Length = 479
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 142/507 (28%), Positives = 216/507 (42%), Gaps = 80/507 (15%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 15 LPKGLKAELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 59
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV II P S+L W+ E +K+ IP L+ + S +A
Sbjct: 60 SFLASELEDNPNLKPVLIITPASLLYNWQSELEKFAPAIPVTVLHGTKQS------RMAE 113
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
M+ KRG V LI Y L I+ + F + + DE
Sbjct: 114 MEEMKRGH--VYLISYPSLRQ-----DIVHFADVAFSSV-----------------IIDE 149
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR
Sbjct: 150 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKF---- 205
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+EI A +I + +KEL +KI T L L + ++ +
Sbjct: 206 KEIPYDNIAKMIRPF--LLRRLKQDVVKELPDKIE--------TNLYSELTDEQKTIYLA 255
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLL-PQQFFESFDVDSAKLARLKLDPE 419
++ Q L +A G + L + P F E++ +S KL +L
Sbjct: 256 YLEKIQADL-EASNGNAGEERIKLLAGLTRLRQICCDPSLFVENYQGESGKLLQL----- 309
Query: 420 AGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKK 479
F I +++L+FSQ+ L +I ++L EGQ + YMDGK K
Sbjct: 310 ------FDTIQTARENGKRILLFSQFTGMLGIIRQKLEE-----EGQPLFYMDGKTPSKT 358
Query: 480 RQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLG 539
R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA RA+R+G
Sbjct: 359 RLDMVNAFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRAHRIG 416
Query: 540 QKRVVHVYHLITSETLEWDKLRRQARK 566
QKRVV V+ +IT T+E Q +K
Sbjct: 417 QKRVVQVFRMITKGTIEERIFELQKKK 443
>gi|150865881|ref|XP_001385272.2| helicase [Scheffersomyces stipitis CBS 6054]
gi|149387137|gb|ABN67243.2| helicase [Scheffersomyces stipitis CBS 6054]
Length = 809
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 136/528 (25%), Positives = 239/528 (45%), Gaps = 75/528 (14%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM 128
K+ PHQ EG +F+++ + G G GC+++ G GKT +T+ +
Sbjct: 173 KLRPHQVEGVKFVYECLMGF----------RGNNGKGCLLADEMGLGKTLMTITVIWTLC 222
Query: 129 KLHPRCRP--------VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+ +P + +I P S++ W++EFKKW L +LS G V+
Sbjct: 223 RQNPFIKQPRSTIHKVLICCPVSLINNWKDEFKKW--------LGMNKLSILTLGGNVSS 274
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS-GDELSGILLDLPGLFVFD 239
D + L+ + L ++ +L ++Y EK+ + ELS I DL V D
Sbjct: 275 NDRQ-------DLVSFGNLNVYQ----VLIMNY---EKVTTYHQELSKIRFDL---LVCD 317
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS 299
EGH ++ + L+ R+I+L+GTP QN+ E ++ + ++ +KS
Sbjct: 318 EGHRLKSSSNKVMNHLTSFNIPRKILLTGTPIQNDLVEYYTIINFINPGILGDFKSFQKS 377
Query: 300 G-REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
I++++ + + + KL ++ ++ F ++L L ++
Sbjct: 378 FINPITRSRDVTCFDPVVKEQGLEISNKLIDITKQ---FTLRRTQSLLLNYLTEKTDVIL 434
Query: 359 ILQPDEFQKRLCKAVEGVKSFVEL--------NYCVSLLSV------HPSLLPQQFFESF 404
P + QKRL + +KSF EL +L+++ PSLL + F S
Sbjct: 435 YAPPTDLQKRLFSYIINLKSFNELMNDSASTTTQAFTLINLFKKLCNSPSLLLEDNFFSK 494
Query: 405 DVDSAK-----LARLKLDPEAGIKTRFLLILLELST-NEKVLVFSQYIEPLTLIMEQLRH 458
+ K L + L +G + +LLE+++ NEK+++ S Y + L L+ L+
Sbjct: 495 LIKGEKEEIELLNKNTLTTSSGKINILIPLLLEITSFNEKIVLVSNYTKTLDLLEAVLK- 553
Query: 459 RFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVL 518
+ L +DG R +N N S + L S+K+ G+NLVGASR++L
Sbjct: 554 ----KLDLSFLRLDGSTAKNLRNKLVNQFN--KSNINVFLLSSKSGGMGLNLVGASRLIL 607
Query: 519 LDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
D WNP V+ Q++SR +R GQ R +Y ++T+ T++ +RQ K
Sbjct: 608 FDNDWNPSVDLQSMSRIHRDGQTRPCFIYRILTTGTIDEKIFQRQLMK 655
>gi|149239807|ref|XP_001525779.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449902|gb|EDK44158.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 1139
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 133/537 (24%), Positives = 244/537 (45%), Gaps = 73/537 (13%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM 128
K+ PHQ EG F+++ + G D GNGC+++ G GKT +T+ + +
Sbjct: 502 KLRPHQIEGVTFMYECVMGFRDF----------VGNGCLLADEMGLGKTLMTITTIWTLL 551
Query: 129 KLHP---RCRPV-----IIAPRSMLLTWEEEFKKW-GID-IPFYNLNKPELSGKENNGAV 178
K +P + +P+ I+ P +++ W+ EFKKW G + + LN P
Sbjct: 552 KQNPFPDQKKPIVNKVLIVCPVTLINNWKAEFKKWLGTNKLNVLTLNNP----------- 600
Query: 179 ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG-DELSGILLDLPGLFV 237
M + KR ++ + +L ++ +L ++Y EK+++ +EL + DL V
Sbjct: 601 --MSDDKRD-----IVNFGRLNVYQ----VLIINY---EKVLAHLEELQTVNFDL---LV 643
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DEGH +N + L ++ +RI+L+GTP QN E +S + ++T +
Sbjct: 644 CDEGHRLKNSSNKVLINLHKLLIPKRIVLTGTPIQNYLVEFHTLISFINPAVLPDMKTFQ 703
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
+ + I+ A ++ + +E KEL F+ +L+ L +
Sbjct: 704 R--KFINPITQARDVNCFNPEVKRKGEELSKELIRLTHKFILRRTQDLLEGYLTPKTDIL 761
Query: 358 VILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSV---------HPSLLP-QQFFESFDVD 407
+ + P + Q + + + + F L ++ L++ PSLL +F++ +
Sbjct: 762 LFVPPTQLQIDIFQLIRSSEKFKYLEPGLTSLALINVFRKICNSPSLLATDEFYQKIATN 821
Query: 408 SAKLARLKLDPEAGIKTRFLLILLELS-TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQ 466
+ KL +G + +LLE++ E+ ++ S Y + L L+ LR + N R +
Sbjct: 822 T-----FKLSTSSGKIHVLIPLLLEITECKERTVLISNYTKTLDLLEHVLR-KLNLRYTR 875
Query: 467 EVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPF 526
+DG R +N N + + + L S+K+ GINLVGASR++L D WNP
Sbjct: 876 ----LDGSTPNNMRNKLVNEFNR-NEEIHVFLLSSKSGGMGINLVGASRLILFDNDWNPS 930
Query: 527 VERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGND 583
+ Q++SR +R GQ + +Y L T+ ++ +RQ K S+ + + D
Sbjct: 931 TDLQSLSRIHRDGQTKPCFIYRLFTAGCIDEKIFQRQLMKSKLSSKFLDNDNASKTD 987
>gi|148682990|gb|EDL14937.1| mCG131426 [Mus musculus]
Length = 1955
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 150/567 (26%), Positives = 255/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 711 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 755
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 756 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 814
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
G KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 815 GGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 864
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 865 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 924
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 925 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 966
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 967 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 1020
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 1021 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1075
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1076 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1135
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1136 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1195
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1196 TKQE-LDDILKFGTEELFKDDVEGMMS 1221
>gi|345481883|ref|XP_001605650.2| PREDICTED: chromodomain-helicase-DNA-binding protein Mi-2 homolog
[Nasonia vitripennis]
Length = 2009
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 135/499 (27%), Positives = 228/499 (45%), Gaps = 52/499 (10%)
Query: 99 STGGGNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGI 157
S G G I++ G GKT T+ FL + Y + H + ++ P S ++ WE EF+ W
Sbjct: 735 SWGQGIDTILADEMGLGKTIQTITFLYSLYKEGHCKGPFLVSVPLSTIINWEREFETWAP 794
Query: 158 DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFE 217
D FY + G +++ V + G V R K+ S ++ +L SY
Sbjct: 795 D--FYCVT---YVGDKDSRMVIRENELSFEEGAVRGGRASKIRSSQIKFNVLLTSY---- 845
Query: 218 KLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQE 277
+L+S D +D + V DE H +++ + F+ L+ +++L+GTP QNN +E
Sbjct: 846 ELISIDSACLGSIDW-AVLVVDEAHRLKSNQSKFFRLLASYNIAYKLLLTGTPLQNNLEE 904
Query: 278 LENTLS-LVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP 336
L + L+ L R +F + L + +ISK ++++K+L E + P
Sbjct: 905 LFHLLNFLCRDKFND-LSAFQNEFADISK------------------EDQVKKLHEMLGP 945
Query: 337 FVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN-----YCVSLLSV 391
+ + +++P +V ++ QK+ K + ++F LN VSLL++
Sbjct: 946 HMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYIL-TRNFEALNPKGGGQQVSLLNI 1004
Query: 392 ---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLV 441
HP L P E+ + L AG +L +L + +VL+
Sbjct: 1005 MMDLKKCCNHPYLFPAASQEAPTGPNGNYETSALIKAAGKLVLLSRMLKKLRDDGHRVLI 1064
Query: 442 FSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAST 501
FSQ + L L+ + L EG + +DG +RQ +I+ N P +Q + L ST
Sbjct: 1065 FSQMTKMLDLLEDYLEG-----EGYKYERIDGNITGTQRQEAIDRFNAPGAQQFVFLLST 1119
Query: 502 KACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561
+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T ++E +
Sbjct: 1120 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQ 1179
Query: 562 RQARKVWWSNMVFPSSDGG 580
RK+ +++V GG
Sbjct: 1180 VAKRKMMLTHLVVRPGMGG 1198
>gi|189458814|ref|NP_083492.2| chromodomain helicase DNA binding protein 5 isoform 2 [Mus musculus]
Length = 1915
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 146/544 (26%), Positives = 243/544 (44%), Gaps = 79/544 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 702 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 746
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 747 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 805
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
G KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 806 GGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 855
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 856 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 915
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 916 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 957
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 958 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 1011
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 1012 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1066
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1067 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1126
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1127 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1186
Query: 586 TASE 589
T E
Sbjct: 1187 TKQE 1190
>gi|123424079|ref|XP_001306506.1| SNF2 family N-terminal domain containing protein [Trichomonas
vaginalis G3]
gi|121888084|gb|EAX93576.1| SNF2 family N-terminal domain containing protein [Trichomonas
vaginalis G3]
Length = 1366
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 150/534 (28%), Positives = 236/534 (44%), Gaps = 98/534 (18%)
Query: 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLN 165
I+ G GKT + L K P +IIAP S L W+ EFKKW NLN
Sbjct: 264 ILGDEMGLGKTAQIVSTLNILSKDENINGPFLIIAPLSTLPHWQSEFKKWS------NLN 317
Query: 166 K------PELSGKENNGAVALMDNRKRG-RGKVGLIRYVKLYSWKMGTGILGLSYRLFEK 218
PE N+ + + D++ + +G VG + Y ++ S L E
Sbjct: 318 SIIYHGSPESLQIINDTEIRVKDDKGKSLKGFVGFDVLITNYD-----TVVNQSKELQE- 371
Query: 219 LVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
+D L V DEGH +N ++ ++K L +L+GTP QNN EL
Sbjct: 372 -----------IDWQYLVV-DEGHRLKNRNSLLYKTLQLFNFVHCTLLTGTPIQNNVDEL 419
Query: 279 ENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
+ LS + +E S E + + N + E++ ELK+ I P++
Sbjct: 420 YSLLSFIDKE-------NFNSSEEFDE-----------KFGNMTNSEQVDELKKLIKPYI 461
Query: 339 -NVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV--------------EGVKSFVELN 383
HK V LP +++ ++ QK++ KA+ + S L
Sbjct: 462 LRRHKSDVDNSILPKT-ETIIDVELTRQQKKIYKALISENREVLMKKLTKNSIPSLNSLA 520
Query: 384 YCVSLLSVHPSLLP-------QQFFESFDVDSAK----LARLKLDPEAGIKTRFLLILLE 432
+ + HP L+ ++F FD +S K L + ++ EA I LIL++
Sbjct: 521 TELRKVCNHPYLIKGAEDSILEEFQNKFDKNSIKSDKNLTKSDIEIEAMINCSGKLILID 580
Query: 433 L------STNEKVLVFSQYIEPLTLIMEQLRH-RFNWREGQEVLYMDGKQDVKKRQSSIN 485
NEKVL+FSQ+ L ++ + LR+ FN+ +DG RQ++I+
Sbjct: 581 KLLPKLKQKNEKVLIFSQWTHILDILEDYLRYISFNYER------LDGSVKPSDRQTAID 634
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
D ++ + + L STKA GINL AS V+L D WNP + QA +R +R+GQ + V
Sbjct: 635 RFKD-NANSFVFLISTKAGGVGINLTTASTVILFDSDWNPQNDLQAEARCHRIGQTKEVK 693
Query: 546 VYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEM 599
VY L+T T E + +K++ +++F DG ++ S+ L K +EEM
Sbjct: 694 VYRLVTRNTYESKMVEVSCKKMFLEHVIF---DGLNSN----SDKLSAKEIEEM 740
>gi|47096999|ref|ZP_00234573.1| helicase, Snf2 family [Listeria monocytogenes str. 1/2a F6854]
gi|254912319|ref|ZP_05262331.1| helicase [Listeria monocytogenes J2818]
gi|254936646|ref|ZP_05268343.1| helicase [Listeria monocytogenes F6900]
gi|386047297|ref|YP_005965629.1| helicase [Listeria monocytogenes J0161]
gi|47014621|gb|EAL05580.1| helicase, Snf2 family [Listeria monocytogenes str. 1/2a F6854]
gi|258609243|gb|EEW21851.1| helicase [Listeria monocytogenes F6900]
gi|293590301|gb|EFF98635.1| helicase [Listeria monocytogenes J2818]
gi|345534288|gb|AEO03729.1| helicase [Listeria monocytogenes J0161]
Length = 1072
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 145/511 (28%), Positives = 219/511 (42%), Gaps = 88/511 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 608 LPKGLKAELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 652
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV II P S+L W+ E +K+ IP L+ + S +A
Sbjct: 653 SFLASELEDNPNLKPVLIITPASLLYNWQSELEKFAPAIPVTVLHGTKQS------RMAE 706
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
M+ KRGR V LI Y L I+ + F + + DE
Sbjct: 707 MEEMKRGR--VYLISYPSLRQ-----DIVHFADVAFSSV-----------------IIDE 742
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR
Sbjct: 743 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKF---- 798
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+EI A +I + +KEL +KI T L L + ++ +
Sbjct: 799 KEIPYDNIAKMIRPF--LLRRLKQDVVKELPDKIE--------TNLYSELTDEQKTIYLA 848
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQQFFESFDVDSAKLARLK 415
++ Q L +A G + L + PSL F E++ +S KL +L
Sbjct: 849 YLEKIQADL-EASNGNAGEERIKLLAGLTRLRQICCDPSL----FVENYQGESGKLLQL- 902
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
F I +++L+FSQ+ L +I ++L EGQ + YMDGK
Sbjct: 903 ----------FDTIQTARENGKRILLFSQFTGMLGIIRQKLEE-----EGQPLFYMDGKT 947
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
K R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA RA
Sbjct: 948 PSKTRLDMVNAFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRA 1005
Query: 536 YRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+R+GQKRVV V+ +IT T+E Q +K
Sbjct: 1006 HRIGQKRVVQVFRMITKGTIEERIFELQKKK 1036
>gi|354501163|ref|XP_003512662.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5-like
[Cricetulus griseus]
Length = 1977
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 149/570 (26%), Positives = 257/570 (45%), Gaps = 86/570 (15%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 686 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 730
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 731 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 789
Query: 187 GRGKVGLIR---YVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGH 242
G KV ++ VK + +L SY +L++ D+ IL + V DE H
Sbjct: 790 GGKKVFRMKKEVQVKFH-------VLLTSY----ELITIDQ--AILGSIEWACLVVDEAH 836
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +
Sbjct: 837 RLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFAD 896
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQP 362
ISK ++++K+L + + P + + +++P +V ++
Sbjct: 897 ISK------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVEL 938
Query: 363 DEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDS 408
+ QK+ K + ++F LN VSLL++ HP L P V++
Sbjct: 939 SQMQKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEA 992
Query: 409 AKLARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNW 462
L D + +K+ L+LL+ +VL+FSQ + L L+ + L +
Sbjct: 993 PVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY---- 1048
Query: 463 REGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVV 522
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1049 -EGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSD 1107
Query: 523 WNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGN 582
WNP + QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1108 WNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKS 1167
Query: 583 DQTTASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1168 GSMTKQE-LDDILKFGTEELFKDDVEGMMS 1196
>gi|327289025|ref|XP_003229225.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5-like [Anolis
carolinensis]
Length = 2037
Score = 137 bits (345), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 140/519 (26%), Positives = 237/519 (45%), Gaps = 72/519 (13%)
Query: 99 STGGGNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGI 157
S G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W
Sbjct: 724 SWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAP 783
Query: 158 DIPFYNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGL 211
+ FY + +G + + AV + DN RG KV I+ ++ +L
Sbjct: 784 E--FYVVT---YTGDKESRAVIRENEFSFEDNAIRGGKKVFRIKKEA----QIKFHVLLT 834
Query: 212 SYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTP 270
SY +L++ D+ IL + V DE H +N+ + F+ L+ K +++L+GTP
Sbjct: 835 SY----ELITIDQ--AILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTP 888
Query: 271 FQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKEL 330
QNN +EL + L+ + E L + +ISK ++++K+L
Sbjct: 889 LQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKL 930
Query: 331 KEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----C 385
+ + P + + +++P +V ++ + QK+ K + ++F LN
Sbjct: 931 HDVLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKLIL-TRNFEALNSKGGGSQ 989
Query: 386 VSLLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE---- 432
VSLL++ HP L P V++ L D + +K+ L+LL+
Sbjct: 990 VSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVLPNGSYDGSSLVKSSGKLMLLQKMLK 1044
Query: 433 --LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDP 490
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P
Sbjct: 1045 KLRDGGHRVLIFSQMTKMLDLLEDFLEY-----EGYKYERIDGGITGGLRQEAIDRFNAP 1099
Query: 491 SSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLI 550
+Q L ST+A GINL A VV+ D WNP + QA SRA+R+GQ + V +Y +
Sbjct: 1100 GAQQFCFLLSTRAGGLGINLATADTVVIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFV 1159
Query: 551 TSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASE 589
T ++E + RK+ +++V G + T E
Sbjct: 1160 TRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQE 1198
>gi|328786654|ref|XP_624551.3| PREDICTED: DNA repair and recombination protein RAD54B-like [Apis
mellifera]
Length = 821
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 144/571 (25%), Positives = 229/571 (40%), Gaps = 107/571 (18%)
Query: 48 CDPFTHAQGTVWELVPRDVRKKMF-----------------PHQREGFEFIWKNIAGGID 90
C PF + RD +K M PHQR G F+++ I G
Sbjct: 195 CSPFIMPSVNI----SRDCKKNMLQNEQEVSVDTCLVNVLRPHQRHGIVFLYECIMG--- 247
Query: 91 LDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPV-----IIAPRSML 145
G I++ G GKT + + +K P P+ I+ P S+
Sbjct: 248 -------LKVPNYFGAILADEMGLGKTLQCITIIWTLLKKGPYGYPILKYVLIVTPSSLC 300
Query: 146 LTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMG 205
W +EFK W + F+ ++ ++ K +K+ R + +I Y L ++
Sbjct: 301 NNWNKEFKHW---LGFHRISPYVVNAKNKPNNF-----KKQIRNSIMIISYEMLIKYQ-- 350
Query: 206 TGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRII 265
E+ I DL + DEGH +N+D K LS + +RRI+
Sbjct: 351 -----------------QEIEQIAFDL---IICDEGHRLKNNDIKTTKVLSNLNCKRRIL 390
Query: 266 LSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHR--- 322
L+GTP QN+ QE + V + S E +++S +C N
Sbjct: 391 LTGTPVQNDLQEFFALIDFVNP-------VILGSSSEFKNYYEKPIVAS--QCPNASCHV 441
Query: 323 ---DDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL------QPDEFQKR----L 369
E+ EL EK F+ ++ + LP +H +VI Q D + +
Sbjct: 442 ISLGTERANELHEKTKCFILRRTQEIINKYLPS-KHELVIFCRLSDEQEDLYSRITNLWF 500
Query: 370 CKAVEGVKSFVELNYCVSLLSV--HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFL 427
K+V + L +L + HP L + E D+ K++ +K G +
Sbjct: 501 SKSVLPNNNISHLTLITALKKICNHPELF---YNEKNDLYLNKVS-IKNITRKGYYGKIS 556
Query: 428 LILLELS----TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSS 483
++ + TNEK+++ S Y + L L+ R E + L +DG R
Sbjct: 557 IVQTLIKNLKKTNEKLVLISYYTQTLDLL-----ERVCNMECLQFLRLDGNTTSSTRSKI 611
Query: 484 INVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRV 543
I N + +I L S KA G+NL GASR++L D WNP + QA++R +R GQK
Sbjct: 612 IEQFNSTNDNNKIFLLSAKAGGVGLNLPGASRLILFDSDWNPASDSQAMARIWRDGQKND 671
Query: 544 VHVYHLITSETLEWDKLRRQARKVWWSNMVF 574
V++ L+T+ T+E +RQ K S V
Sbjct: 672 VYILRLLTTGTIEEKIFQRQINKANLSETVI 702
>gi|367006803|ref|XP_003688132.1| hypothetical protein TPHA_0M01230 [Tetrapisispora phaffii CBS 4417]
gi|357526439|emb|CCE65698.1| hypothetical protein TPHA_0M01230 [Tetrapisispora phaffii CBS 4417]
Length = 984
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 147/582 (25%), Positives = 251/582 (43%), Gaps = 90/582 (15%)
Query: 68 KKMFPHQREGFEFIWKNIAG--------GIDLDELKNSTSTG-------GGNGCIISHAP 112
K + PHQREG +F++ + G + D+ +STS GC+++
Sbjct: 314 KLLRPHQREGVKFMYDCMMGLQRPSTTIVKNTDDDGDSTSKSLTLEYDSDIKGCLLADEM 373
Query: 113 GTGKTGLTLVFL----------------QAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKW 155
G GKT +T+ + Q+ + LH + +I+ P +++ W+ EF KW
Sbjct: 374 GLGKTLMTITLIWTLLKQTAFPTNVAVSQSGVPLHGAYKKFIIVCPVTLIGNWKREFGKW 433
Query: 156 GIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL 215
+ + LS K NN MD R KV I V + ++ IL +S L
Sbjct: 434 ---LGLSAIGILTLSPK-NNSEKDKMD--VRNFLKVQRIYQVLIIGYE---KILSVSDDL 484
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
FE D + + DEGH +N + + AL R+ +++LSGTP QN+
Sbjct: 485 FENK-----------DKIDMIICDEGHRLKNGSSKILNALKRLDVENKVLLSGTPIQNDL 533
Query: 276 QELENTLSLVR-------QEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLK 328
E + + F + T R+++ ++ I SIG EK K
Sbjct: 534 NEFFTIIDFINPGILGSFNHFKKKFITPITRARDVNN-RYNEDILSIGS-------EKSK 585
Query: 329 ELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSF--VELNYCV 386
E+ + FV ++L + LP ++ +P + Q + V F L++
Sbjct: 586 EMIQITKRFVLRRTNSLLTKYLPPKNDVILFCKPTDAQLNAFSDIFSVSHFDINNLSFTS 645
Query: 387 SL--------LSVHPSLL-PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--ST 435
SL + P L+ +++S +S+ + ++G F+ +L + +T
Sbjct: 646 SLGLITLFKKICNTPMLIKSDSYYQSNLRNSSTTLVYENKLDSGKLKVFMSLLDHIRNAT 705
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
+EKV++ S Y + L ++ +R + +DG K+R S + N ++
Sbjct: 706 DEKVVIVSNYTQTLDILENLMRS-----QNITTCRLDGSTPNKQRDSIVTNFNRNANIFG 760
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
+L+S K+ G+NL+GASR++L D WNP ++ QA+SR +R GQK+ H+Y LIT+ +
Sbjct: 761 FLLSS-KSGGAGLNLIGASRLILFDNDWNPSIDLQAMSRIHRDGQKKTCHIYRLITTGCI 819
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGG----NDQTTASEPLED 593
+ +RQ K S D ND E L+D
Sbjct: 820 DEKIFQRQLMKHSLSQQFLNDQDDNSGSHKNDDLFNKEDLKD 861
>gi|315043318|ref|XP_003171035.1| DNA repair and recombination protein RAD54 [Arthroderma gypseum CBS
118893]
gi|311344824|gb|EFR04027.1| DNA repair and recombination protein RAD54 [Arthroderma gypseum CBS
118893]
Length = 922
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 140/541 (25%), Positives = 225/541 (41%), Gaps = 83/541 (15%)
Query: 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP 132
HQREG +F+++ + G + G G I++ G GKT T+ + +K +P
Sbjct: 257 HQREGVKFLYECVMGLRPFN----------GEGAILADEMGLGKTLQTIALIWTLLKQNP 306
Query: 133 --RCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRK 185
+PVI + P +++ W++EFKKW L + +G+ + +
Sbjct: 307 IYGSQPVIKKALIVCPVTLINNWKKEFKKW--------LGSDRIGVFVADGSRNRLSDFT 358
Query: 186 RGRG-KVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG--LFVFDEGH 242
GR V +I Y +L S + E+L G PG + + DEGH
Sbjct: 359 MGRSYSVMIIGYERLRSVQ-------------EQLTKG----------PGIDIVIADEGH 395
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+ +A+ + T RRIILSGTP QN E + V L T + RE
Sbjct: 396 RLKTVQNKSAQAIQSLNTSRRIILSGTPIQNELSEFFAMVDFVNPAL---LGTFKSFMRE 452
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQP 362
A+ + + + + +EL E +PF+ +L + LP ++ P
Sbjct: 453 FDGPIVAARQPNAPKKVVEKGKARSEELAELTSPFILRRTADILSKHLPPKTEYILFCNP 512
Query: 363 DEFQKRLCKAV----------EGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLA 412
Q+ + + V + +S ++L + + PSLL + ++ + ++
Sbjct: 513 TSAQRNVYQHVLASPLFQSVLKNSESALQLITILKKVCNSPSLLKPKLEDNGKAEDTSMS 572
Query: 413 RL--KLDPE------AGIKTRF-----LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR 459
L P AG + LL L+ T EKV++ S Y L
Sbjct: 573 AFISSLQPNIHRCLVAGSSGKIRVLDQLLYNLQSKTTEKVVLVSNYTS-----TLNLLAN 627
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGINLVGASRVVL 518
L +DG KRQ+ ++ N P S L S KA G+NL+GASR+VL
Sbjct: 628 LLTSLDLPFLRLDGSTPASKRQALVDDFNRSPPSSCFAFLLSAKAGGTGLNLIGASRLVL 687
Query: 519 LDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
DV WNP + QA++R +R GQKR H+Y L+ +E +RQ K+ ++ V
Sbjct: 688 FDVDWNPATDIQAMARIHRDGQKRHCHIYRLLLKGGIEEKIWQRQVTKLGLADSVMDQKG 747
Query: 579 G 579
G
Sbjct: 748 G 748
>gi|121700957|ref|XP_001268743.1| dsDNA-dependent ATPase (Rad54b), putative [Aspergillus clavatus
NRRL 1]
gi|119396886|gb|EAW07317.1| dsDNA-dependent ATPase (Rad54b), putative [Aspergillus clavatus
NRRL 1]
Length = 976
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 142/538 (26%), Positives = 224/538 (41%), Gaps = 79/538 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+++ + G + G G I++ G GKT T+ L
Sbjct: 282 KHLRPHQREGVQFLYECVMGMRSFN----------GEGAILADDMGLGKTLQTITLLWML 331
Query: 128 MKLHP--RCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P PVI + P +++ W +EF+KW G E G
Sbjct: 332 LKQNPIHDSAPVIKKALIVCPVTLINNWRKEFRKW--------------LGNERIGVFVF 377
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE--LSGILLDLPGLFVF 238
D RKR L + K ++ + I+G +EKL + E G +D+ +
Sbjct: 378 DDKRKR------LTDFTKGRAYSVM--IVG-----YEKLRTVQEGLARGAGVDI---VIA 421
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK 298
DEGH + +A+ + +RIILSGTP QN+ +E + LV +L T +
Sbjct: 422 DEGHRLKTLQNKSGQAIQALNATKRIILSGTPIQNDLKEFFAAVDLVNPG---ILGTFKA 478
Query: 299 SGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
+E S R + + + +EL+E + F+ +L + LP V+
Sbjct: 479 FVKEFEGPIVRSRQPEATRKEIEKGEARNEELRELTSKFMLRRTADILAKYLPPKSEYVL 538
Query: 359 ILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSVHPSLL--------PQQF 400
P Q + + A+ ++ + L + L PSLL P +
Sbjct: 539 FCNPTSTQANIYRNVLASPVFQCAIGNSENALHLITILKKLCNSPSLLSPKNADETPSET 598
Query: 401 FESFDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPLTLIMEQLR 457
+ P + K R L LL ST+EK+++ S Y L
Sbjct: 599 IAALLSSLPPNLLRHFSPSSSAKIRVLDQLLHNLRTSTSEKIVLVSNYTS-----TLNLL 653
Query: 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLND-PSSQARIMLASTKACCEGINLVGASRV 516
L +DG +KRQS + N P+ L S KA G+NL+GASR+
Sbjct: 654 ANLLSSLSLPFLRLDGSTPAQKRQSLVEDFNRLPADLCFAFLLSAKAGGTGLNLIGASRL 713
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVF 574
VL DV WNP + QA++R +R GQKR +Y ++ +LE +RQ K+ ++ V
Sbjct: 714 VLFDVDWNPATDIQAMARIHRDGQKRHCRIYRILLKGSLEEKIWQRQVTKIGLADSVM 771
>gi|119627334|gb|EAX06929.1| RAD54-like (S. cerevisiae), isoform CRA_a [Homo sapiens]
Length = 567
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 128/495 (25%), Positives = 218/495 (44%), Gaps = 69/495 (13%)
Query: 113 GTGKTGLTLVFLQAYMKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKP 167
G GKT + + ++ P C+P V+++P S++ W E KW
Sbjct: 6 GLGKTLQCITLMWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKW------------ 53
Query: 168 ELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG 227
L G+ A+ D + L ++ ++ + IL +SY F V +
Sbjct: 54 -LGGRIQPLAI---DGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGS 109
Query: 228 ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
+ GL + DEGH +N + ++AL + T RR+++SGTP QN+ E SLV
Sbjct: 110 V-----GLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHF 161
Query: 288 EFGEVLRTVRKSGREISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKG 343
+L T E K ++ A+ D +E+L+EL + +
Sbjct: 162 VNSGILGT----AHEFKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTS 217
Query: 344 TVLQESLPGLRHSVVI--LQP--DEFQKRLCKAVEGVKSFVE---------LNYCVSLLS 390
+L + LP VV L P E KR + + + +E + L
Sbjct: 218 DILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLC 277
Query: 391 VHPSLLPQQ-------FFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVL 440
HP+L+ + F + D+ + L+P+ K L +L ++ +++KV+
Sbjct: 278 NHPALIYDKCVEEEDGFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVV 337
Query: 441 VFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIML 498
+ S Y + L L + R R LY +DG +KKR + N PSS + +
Sbjct: 338 LVSNYTQTLDLFEKLCRAR-------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFM 390
Query: 499 ASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWD 558
S+KA G+NL+GA+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E
Sbjct: 391 LSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEK 450
Query: 559 KLRRQARKVWWSNMV 573
+RQ+ K S+ V
Sbjct: 451 IFQRQSHKKALSSCV 465
>gi|149045437|gb|EDL98437.1| similar to RAD54B homolog isoform 1; RAD54, S. cerevisiae, homolog
of, B (predicted), isoform CRA_b [Rattus norvegicus]
Length = 819
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 156/597 (26%), Positives = 243/597 (40%), Gaps = 114/597 (19%)
Query: 57 TVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGK 116
TV ++ + + + PHQ++G F+++ + G G G I++ G GK
Sbjct: 194 TVDVVIDPHLVRHLRPHQKDGVAFLYECVMG----------MRAVGKCGAILADEMGLGK 243
Query: 117 TGLTLVFLQAYMKLHPRC------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELS 170
T + + P R +I+ P S++ W +EF+KW
Sbjct: 244 TLQCISLIWTLQCQGPYGGKPIVKRTLIVTPGSLVNNWRKEFQKW--------------L 289
Query: 171 GKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILL 230
G E + + K V+ + +L +SY + L S D + I
Sbjct: 290 GSERIKIFTVDQDHK-----------VEEFINSAFHSVLIISYEML--LRSLDRIKTITF 336
Query: 231 DLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQE-----------LE 279
GL + DEGH +N ALS + +R+IL+GTP QN+ QE +
Sbjct: 337 ---GLLICDEGHRLKNSGIKTTAALSSLSCEKRVILTGTPVQNDLQEFFALVDFVNPGIL 393
Query: 280 NTLSLVRQEFGEVLRTVR-----KSGREISKAKHASLISSIGRCANHRDDEKL-KELKEK 333
+LS R+ + E + R K RE+ + + L G R E + K L K
Sbjct: 394 GSLSSYRRIYEEPIVMSREPSASKEERELGERRTTELTRLTGCFILRRTQEVINKYLPPK 453
Query: 334 IAPFVNVHKGTVLQE-------------SLPGLRHSVVILQPDEFQKRLCKAVEGVKSFV 380
I V G + E L GL + L K+LC + SFV
Sbjct: 454 IENVVFCRPGALQIELYRKLLSSQSVRFCLQGLLGNSAHLICIGALKKLCNHPRLLFSFV 513
Query: 381 -------------ELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFL 427
E + C LL+V P+ + + +S KL L + L
Sbjct: 514 KGKEFNSSRDENEERSLCQGLLTVFPA--GYNLLQLSESESGKLQVL---------VKLL 562
Query: 428 LILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVL 487
+ EL EKV++ S Y + L L+ E + G +DG+ V +RQ ++
Sbjct: 563 AAISELRPTEKVILVSNYRQTLNLLEEVCKC-----HGYACARLDGQTPVSQRQQIVDNF 617
Query: 488 NDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVY 547
N S I L S+KA G+NL+G S ++L D+ WNP + QA++R +R GQK VHVY
Sbjct: 618 NSKYSTDFIFLLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMARVWRDGQKHPVHVY 677
Query: 548 HLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYN 604
L+T+ T+E +RQ K S V D T +SE ++ + EE+ L+
Sbjct: 678 RLLTTGTIEEKIYQRQISKQGLSGAVV--------DLTRSSEQIQFSV-EELKNLFT 725
>gi|425777849|gb|EKV16005.1| DNA repair protein Rhp26/Rad26, putative [Penicillium digitatum
PHI26]
gi|425782618|gb|EKV20517.1| DNA repair protein Rhp26/Rad26, putative [Penicillium digitatum
Pd1]
Length = 1117
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 149/548 (27%), Positives = 241/548 (43%), Gaps = 86/548 (15%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
VP D+ + +FP+Q+ G +++W EL T G II G GKT +
Sbjct: 324 VPGDISRFLFPYQKIGVQWLW----------ELHQQTV-----GGIIGDEMGLGKTIQAI 368
Query: 122 VFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF------------YNLNKPE 168
+L A +P +I+ P +++ W EF +W PF NL K
Sbjct: 369 SYLAALHHSKKLTKPAIIVCPATLMKQWVNEFHRWWP--PFRVSILHSSGSGMINLGKE- 425
Query: 169 LSGKENNGAVALM---DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225
S +EN + +M ++R+ G+ R +K + + +L +Y +
Sbjct: 426 -SSRENALSSEMMGSRNSRQLSAGQKADKRIIKRVTEE--GHVLVTTYSGLQSYADA--- 479
Query: 226 SGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
L+D+ G + DEGH RN D + + ++T RIILSGTP QN+ +L +
Sbjct: 480 ---LVDVEWGCAILDEGHKIRNPDAGITFSCKELRTPHRIILSGTPMQNSLVDLWSLFDF 536
Query: 285 V-RQEFGEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPFVN 339
V G ++ + I + +AS + + +CA + LK+ I+P++
Sbjct: 537 VFPMRLGNLVTFKNQFEIPIRQGGYASASNLQVQTAAKCA--------ETLKDAISPYLL 588
Query: 340 VHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEG---VKSFVELN----YCVSLL--- 389
+ LP V+ + + Q+ + K G +KS V + + +L
Sbjct: 589 QRFKADVTSDLPMKSEQVIFCKLTQLQRTIYKRFLGSDDMKSIVRGKRNSLFGIDILRKI 648
Query: 390 SVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIE 447
S HP L S + D D E K + L LLE+ T K LVF+Q
Sbjct: 649 SNHPDLA-DHALRSREADYG-------DAERSGKMKVLKGLLEVWRDTGHKTLVFTQGRL 700
Query: 448 PLTLIMEQLR--HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACC 505
L +I + L FN R MDG +K+RQ+ ++ N+ + + + L +T+
Sbjct: 701 MLDIIEKFLGVLGGFNSRR------MDGTTPIKERQNLVDEFNN-NPEIHVFLLTTRVGG 753
Query: 506 EGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQAR 565
G+NL GA RV++ D WNP + QA RA+RLGQKR V ++ L+T T+E RQ
Sbjct: 754 IGVNLTGADRVIIYDPDWNPSTDLQARERAWRLGQKRDVTIFRLMTKGTIEEKIYHRQIF 813
Query: 566 KVWWSNMV 573
K + +N +
Sbjct: 814 KQFLTNKI 821
>gi|300795783|ref|NP_001178684.1| fibrinogen silencer-binding protein [Rattus norvegicus]
Length = 888
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 154/586 (26%), Positives = 238/586 (40%), Gaps = 114/586 (19%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
+ + PHQ++G F+++ + G G G I++ G GKT + +
Sbjct: 274 RHLRPHQKDGVAFLYECVMG----------MRAVGKCGAILADEMGLGKTLQCISLIWTL 323
Query: 128 MKLHPRC------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
P R +I+ P S++ W +EF+KW G E +
Sbjct: 324 QCQGPYGGKPIVKRTLIVTPGSLVNNWRKEFQKW--------------LGSERIKIFTVD 369
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
+ K V+ + +L +SY + L S D + I GL + DEG
Sbjct: 370 QDHK-----------VEEFINSAFHSVLIISYEML--LRSLDRIKTITF---GLLICDEG 413
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQE-----------LENTLSLVRQEFG 290
H +N ALS + +R+IL+GTP QN+ QE + +LS R+ +
Sbjct: 414 HRLKNSGIKTTAALSSLSCEKRVILTGTPVQNDLQEFFALVDFVNPGILGSLSSYRRIYE 473
Query: 291 EVLRTVR-----KSGREISKAKHASLISSIGRCANHRDDEKL-KELKEKIAPFVNVHKGT 344
E + R K RE+ + + L G R E + K L KI V G
Sbjct: 474 EPIVMSREPSASKEERELGERRTTELTRLTGCFILRRTQEVINKYLPPKIENVVFCRPGA 533
Query: 345 VLQE-------------SLPGLRHSVVILQPDEFQKRLCKAVEGVKSFV----------- 380
+ E L GL + L K+LC + SFV
Sbjct: 534 LQIELYRKLLSSQSVRFCLQGLLGNSAHLICIGALKKLCNHPRLLFSFVKGKEFNSSRDE 593
Query: 381 --ELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEK 438
E + C LL+V P+ + + +S KL L + L + EL EK
Sbjct: 594 NEERSLCQGLLTVFPA--GYNLLQLSESESGKLQVL---------VKLLAAISELRPTEK 642
Query: 439 VLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498
V++ S Y + L L+ E + G +DG+ V +RQ ++ N S I L
Sbjct: 643 VILVSNYRQTLNLLEEVCKC-----HGYACARLDGQTPVSQRQQIVDNFNSKYSTDFIFL 697
Query: 499 ASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWD 558
S+KA G+NL+G S ++L D+ WNP + QA++R +R GQK VHVY L+T+ T+E
Sbjct: 698 LSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMARVWRDGQKHPVHVYRLLTTGTIEEK 757
Query: 559 KLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYN 604
+RQ K S V D T +SE ++ + EE+ L+
Sbjct: 758 IYQRQISKQGLSGAVV--------DLTRSSEQIQFSV-EELKNLFT 794
>gi|295662396|ref|XP_002791752.1| DNA repair and recombination protein RAD26 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226279878|gb|EEH35444.1| DNA repair and recombination protein RAD26 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 1234
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 143/566 (25%), Positives = 237/566 (41%), Gaps = 118/566 (20%)
Query: 62 VPRDVRKKMFPHQREGFEFIW---KNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
VP D+ +F +Q+ G +++W + GGI DE+ G GKT
Sbjct: 415 VPGDIYHYLFDYQKTGVQWLWELYQQKVGGIIGDEM------------------GLGKTI 456
Query: 119 LTLVFLQAYMKLHPRCRPVII-APRSMLLTWEEEFKKW---------------------- 155
+ FL +P+I+ P +++ W EF +W
Sbjct: 457 QVIAFLAGLHYSKKLTKPIIVVCPPTVMKQWVNEFHRWWAPFRVSILHTSGSGMINLRRE 516
Query: 156 -----GIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILG 210
++ ++ N+P + KE A ++D R +G V + Y L ++
Sbjct: 517 SYADARLESQIWDPNQPRKATKEQKAAKKILD-RVLAKGHVLVTTYSGLQTY-------- 567
Query: 211 LSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGT 269
S +L+ + G + DEGH RN DT + ++T R+ILSGT
Sbjct: 568 ---------------SSLLIPVEWGCSILDEGHKIRNPDTAITIHCKELRTAHRLILSGT 612
Query: 270 PFQNNFQELENTLSLV-RQEFGEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDD 324
P QNN EL + V G ++ + I + +A+ + + +CA
Sbjct: 613 PMQNNLTELWSLFDFVFPMRLGTLVNFRNQFEFPIRQGGYANASNLQVQTAAKCA----- 667
Query: 325 EKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEG-------VK 377
+ LK+ I+P++ + LP V+ + + Q+ +A G ++
Sbjct: 668 ---ETLKDAISPYLLQRFKIDVAADLPKKSEQVLFCKLTKIQRSAYQAFLGSNEMSSILR 724
Query: 378 SFVELNYCVSLLSV---HPSLLPQQFFES---FDVDSAKLARLKLDPEAGIKTRFLLILL 431
E Y + +L HP L + + ++ SA ++G K + + LL
Sbjct: 725 GRREALYGIDMLRKICNHPDLPEHKTLSTKPGYNYGSAA--------KSG-KMQVVKALL 775
Query: 432 EL--STNEKVLVFSQYIEPLTLIMEQLRHRF-NWREGQEVLYMDGKQDVKKRQSSINVLN 488
EL T K L+F+Q+ IM + RF G + MDG +K RQS ++ N
Sbjct: 776 ELWKETGHKSLLFAQH-----RIMLDILERFIKSMTGFKYQRMDGNTPIKLRQSLVDEFN 830
Query: 489 DPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYH 548
+ + + I L +TK G+NL GA RV++ D WNP + QA RA+RLGQKR V +Y
Sbjct: 831 N-NPEIHIFLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDVQARERAWRLGQKREVTIYR 889
Query: 549 LITSETLEWDKLRRQARKVWWSNMVF 574
L+T+ T+E RQ K + +N +
Sbjct: 890 LMTAGTIEEKIYHRQIFKQFLTNKIL 915
>gi|5911978|emb|CAB55959.1| hypothetical protein [Homo sapiens]
Length = 1388
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 134 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 178
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 179 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 237
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 238 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 287
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 288 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 347
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 348 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 389
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 390 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 443
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 444 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 498
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 499 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 558
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 559 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 618
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 619 TKQE-LDDILKFGTEELFKDDVEGMMS 644
>gi|445114492|ref|ZP_21377954.1| hypothetical protein HMPREF0662_01006 [Prevotella nigrescens F0103]
gi|444840721|gb|ELX67747.1| hypothetical protein HMPREF0662_01006 [Prevotella nigrescens F0103]
Length = 1345
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 143/524 (27%), Positives = 226/524 (43%), Gaps = 85/524 (16%)
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
LVP+ + ++ +Q EGFE++ S T G G ++ G GKT T
Sbjct: 884 LVPKTLNTQLRDYQEEGFEWL---------------SKVTSWGAGVCLADDMGLGKTLQT 928
Query: 121 LVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+ L ++ + +++AP S++ W E +++ P LN L+ +N A
Sbjct: 929 IALL---LEQSSKGASLVVAPASVVPNWRNELRRFA---P--TLNVIVLNQSDNRTA--- 977
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
D K G V +I Y+ L + +K+++ E + LD E
Sbjct: 978 -DIEKVQAGDVVVITYMLL--------------NIEQKILTEHEWVVVCLD--------E 1014
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
HT +N +T M KA ++K RR++IL+GTP QN+ EL N +
Sbjct: 1015 AHTIKNANTKMSKAAMQLKARRKVILTGTPIQNHLSELWNLFQFINPGL--------LGS 1066
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV-NVHKGTVLQESLPGLRHSVVI 359
E K K I + D E+ +L+ IAPF+ KG V++E L I
Sbjct: 1067 AEQFKQKF------IQPIEGYNDKERQSQLRRLIAPFLLRRTKGEVIKE----LPDKTDI 1116
Query: 360 LQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPE 419
P E E + VE ++ SL E + + +D
Sbjct: 1117 QLPVELSSNEITMYEMHRKMVE-----EMVRSDKSLNVSTLAEITKLRQMACSCSLVDKS 1171
Query: 420 AGIKTRFLLILLELS-----TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGK 474
+ + LL ++L+ + + LVFSQ+ T +E++R+ + LY+DG
Sbjct: 1172 WKVPSSKLLAFIDLAESLNDSGNRALVFSQF----TSFLEEVRYAMD-NAQLPYLYLDGS 1226
Query: 475 QDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISR 534
+ KR+ + S + L S KA G+NL GA+ VV LD WNP +E+QA R
Sbjct: 1227 TPMAKREQLVKDFQ--SGRCPFFLISLKAGGLGLNLTGANYVVHLDPWWNPAIEQQATDR 1284
Query: 535 AYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
AYR+GQ++ V VYHLI+ T+E LR K ++ + SD
Sbjct: 1285 AYRIGQQQDVTVYHLISQHTIEEKILRLHKTKRDLADSLLEGSD 1328
>gi|441471364|emb|CCQ21119.1| Uncharacterized ATP-dependent helicase MG018 [Listeria
monocytogenes]
Length = 446
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 137/468 (29%), Positives = 203/468 (43%), Gaps = 73/468 (15%)
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYN 163
G I++ G GKT T+ FL + ++ +P +PV II P S+L W+ E +K+ IP
Sbjct: 10 GGILADDMGLGKTVQTISFLASELEDNPNLKPVLIITPASLLYNWQSELEKFAPAIPVTV 69
Query: 164 LNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD 223
L+ + S +A M+ KRG V LI Y L I+ + F +
Sbjct: 70 LHGTKQS------RMAEMEEMKRGH--VYLISYPSLRQ-----DIVHFADVAFSSV---- 112
Query: 224 ELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS 283
+ DE +N T +A+ +K LSGTP +N+ EL
Sbjct: 113 -------------IIDESQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQ 159
Query: 284 LVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
+ F LR +EI A +I + +KEL +KI
Sbjct: 160 TLMPGFFPSLRKF----KEIPYDNIAKMIRPF--LLRRLKQDVVKELPDKIE-------- 205
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQ 398
T L L + ++ + ++ Q L +A G + L + PSL
Sbjct: 206 TNLYSELTDEQKTIYLAYLEKIQADL-EASNGNAGEERIKLLAGLTRLRQICCDPSL--- 261
Query: 399 QFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRH 458
F E++ +S KL +L F I +++L+FSQ+ L +I ++L
Sbjct: 262 -FVENYQGESGKLLQL-----------FDTIQTARENGKRILLFSQFTGMLGIIRQKLEE 309
Query: 459 RFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVL 518
EGQ + YMDGK K R +N N+ + I L S KA G+NLVGA V+L
Sbjct: 310 -----EGQPLFYMDGKTPSKTRLDMVNAFNE--GENDIFLISLKAGGTGLNLVGADTVIL 362
Query: 519 LDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
D+ WNP VE QA RA+R+GQKRVV V+ +IT T+E Q +K
Sbjct: 363 YDLWWNPAVEEQATGRAHRIGQKRVVQVFRMITKGTIEERIFELQKKK 410
>gi|193787140|dbj|BAG52346.1| unnamed protein product [Homo sapiens]
Length = 979
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 253/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 216 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 260
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 261 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFGDNAIR 319
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 320 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 369
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 370 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 429
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K L + + P + + +++P +V ++ +
Sbjct: 430 ------------------EDQIKRLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 471
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 472 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 525
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 526 PNGSNDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 580
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 581 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRASGLGINLATADTVIIYDSDWNP 640
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 641 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 700
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 701 TKQE-LDDILKFGTEELFKDDVEGMMS 726
>gi|395731282|ref|XP_002811619.2| PREDICTED: chromodomain-helicase-DNA-binding protein 5, partial
[Pongo abelii]
Length = 1588
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 410 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 454
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 455 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 513
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 514 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 563
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 564 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 623
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 624 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 665
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 666 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 719
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 720 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 774
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 775 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 834
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 835 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 894
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 895 TKQE-LDDILKFGTEELFKDDVEGMMS 920
>gi|24666729|ref|NP_649111.1| Chd3 [Drosophila melanogaster]
gi|25089877|sp|O16102.3|CHD3_DROME RecName: Full=Chromodomain-helicase-DNA-binding protein 3; AltName:
Full=ATP-dependent helicase Chd3
gi|23093148|gb|AAF49162.2| Chd3 [Drosophila melanogaster]
Length = 892
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 142/522 (27%), Positives = 230/522 (44%), Gaps = 76/522 (14%)
Query: 99 STGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR-PVIIA-PRSMLLTWEEEFKKWG 156
S G G I++ G GKT T+VFL + K CR P +I+ P S L WE E + W
Sbjct: 281 SWGQGIPTILADEMGLGKTIQTVVFLYSLFK-EGHCRGPFLISVPLSTLTNWERELELWA 339
Query: 157 IDIPFYN----------LNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGT 206
++ + K E+S +E + +N+ + + V L Y
Sbjct: 340 PELYCVTYVGGKTARAVIRKHEISFEEVTTKT-MRENQTQYKFNVMLTSY---------- 388
Query: 207 GILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIIL 266
+ +S D +D L V DE H R++ + F+ LS+ + +++L
Sbjct: 389 -----------EFISVDAAFLGCIDWAALVV-DEAHRLRSNQSKFFRILSKYRIGYKLLL 436
Query: 267 SGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEK 326
+GTP QNN +EL + L+ + L+T + ++SK +E+
Sbjct: 437 TGTPLQNNLEELFHLLNFLSSGKFNDLQTFQAEFTDVSK------------------EEQ 478
Query: 327 LKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-- 384
+K L E + P + + +S+P +V ++ QK+ K + K+F LN
Sbjct: 479 VKRLHEILEPHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKFYKHIL-TKNFKALNQKG 537
Query: 385 ---CVSLLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE 432
SLL++ HP L P E+ S L +G +L +
Sbjct: 538 GGRVCSLLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYEMSSLTKASGKLDLLSKMLKQ 597
Query: 433 L-STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPS 491
L + N +VL+FSQ +T ++ L H F EG + +DG RQ +I+ NDP
Sbjct: 598 LKADNHRVLLFSQ----MTKMLNVLEH-FLEGEGYQYDRIDGSIKGDLRQKAIDRFNDPV 652
Query: 492 SQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLIT 551
S+ + L ST+A GINL A V++ D WNP + QA SRA+R+GQK+ V +Y +T
Sbjct: 653 SEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVT 712
Query: 552 SETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLED 593
++E ++ K+ +++V GG + E LED
Sbjct: 713 HNSVEERIMQVAKHKMMLTHLVVRPGMGGMTTNFSKDE-LED 753
>gi|363741929|ref|XP_003642567.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5 [Gallus
gallus]
Length = 1947
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 148/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 690 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 734
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 735 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 793
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ +L + V DE H +
Sbjct: 794 SGKKV--FRMKKEAQIKFH--VLLTSY----ELITIDQ--AVLGSIEWACLVVDEAHRLK 843
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 844 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 903
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 904 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 945
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 946 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 999
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 1000 PNGSYDGNSLVKSSGKLMLLQKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEY-----EG 1054
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1055 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1114
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1115 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1174
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1175 TKQE-LDDILKFGTEELFKDDVEGMVS 1200
>gi|159131635|gb|EDP56748.1| dsDNA-dependent ATPase (Rad54b), putative [Aspergillus fumigatus
A1163]
Length = 969
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 145/543 (26%), Positives = 222/543 (40%), Gaps = 89/543 (16%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQREG +F+++ + G + G G I++ G GKT T+ L
Sbjct: 284 KHLRQHQREGVQFLYECVMGMRSFN----------GEGAILADDMGLGKTLQTITLLWTL 333
Query: 128 MKLHP--RCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P PVI + P +++ W +EF+KW G E G
Sbjct: 334 LKQNPIHESPPVIKKALIVCPVTLINNWRKEFRKW--------------LGNERIGVFVF 379
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTG----ILGLSYRLFEKLVSGDE--LSGILLDLPG 234
D RKR L + MG I+G +EKL + E G +D+
Sbjct: 380 DDKRKR------------LTDFTMGRAYSVMIVG-----YEKLRTVQEGLARGAGVDI-- 420
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGEVL 293
+ DEGH + +A+ + +RIILSGTP QN+ +E + LV G
Sbjct: 421 -IIADEGHRLKTLQNKSGQAIQSLNATKRIILSGTPIQNDLKEFFAAVDLVNPGILGNFK 479
Query: 294 RTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGL 353
VR+ I K++ R++E L+EL K F+ +L + LP
Sbjct: 480 AFVREFEGPIVKSRQPEATKKEIEKGEARNEE-LRELTSK---FMLRRTVDILAKYLPPK 535
Query: 354 RHSVVILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSVHPSLL------- 396
V+ P Q + K A+ ++ ++L + L PSLL
Sbjct: 536 TEYVLFCNPTSTQATIYKNVLASPVFQCAIGNSENALQLITILKKLCNSPSLLSPKTGDE 595
Query: 397 -PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPLTLI 452
P + + P K R L LL ST+EK+++ S Y
Sbjct: 596 RPSETITALLSSLPPNLLRHFTPSCSAKIRLLDQLLHNLRTSTSEKIVLVSNYTS----- 650
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND-PSSQARIMLASTKACCEGINLV 511
L L +DG +KRQ+ + N P ++ L S KA G+NL+
Sbjct: 651 TLNLLANLLNSLSLPFLRLDGSTPAQKRQALVEDFNRLPPNRCFAFLLSAKAGGTGLNLI 710
Query: 512 GASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSN 571
GASR+VL DV WNP + QA++R +R GQKR +Y ++ +LE +RQ K+ ++
Sbjct: 711 GASRLVLFDVDWNPATDVQAMARIHRDGQKRHCRIYRILLKGSLEEKIWQRQVTKIGLAD 770
Query: 572 MVF 574
V
Sbjct: 771 SVM 773
>gi|358416078|ref|XP_609360.5| PREDICTED: chromodomain-helicase-DNA-binding protein 5 [Bos taurus]
Length = 1991
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 737 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 781
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 782 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 840
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 841 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 890
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 891 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 950
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 951 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 992
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 993 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 1046
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 1047 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1101
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1102 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1161
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1162 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1221
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1222 TKQE-LDDILKFGTEELFKDDVEGMMS 1247
>gi|326932279|ref|XP_003212247.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5-like, partial
[Meleagris gallopavo]
Length = 1949
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 148/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 675 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 719
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 720 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 778
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ +L + V DE H +
Sbjct: 779 SGKKV--FRMKKEAQIKFH--VLLTSY----ELITIDQ--AVLGSIEWACLVVDEAHRLK 828
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 829 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 888
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 889 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 930
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 931 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 984
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 985 PNGSYDGNSLVKSSGKLMLLQKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEY-----EG 1039
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1040 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1099
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1100 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1159
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1160 TKQE-LDDILKFGTEELFKDDVEGMVS 1185
>gi|426327635|ref|XP_004024622.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5 [Gorilla
gorilla gorilla]
Length = 2024
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 770 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 814
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 815 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 873
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 874 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 923
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 924 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 983
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 984 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 1025
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 1026 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 1079
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 1080 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1134
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1135 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1194
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1195 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1254
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1255 TKQE-LDDILKFGTEELFKDDVEGMMS 1280
>gi|386050620|ref|YP_005968611.1| helicase [Listeria monocytogenes FSL R2-561]
gi|346424466|gb|AEO25991.1| helicase [Listeria monocytogenes FSL R2-561]
Length = 837
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 144/511 (28%), Positives = 218/511 (42%), Gaps = 88/511 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 373 LPKGLKAELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 417
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV II P S+L W+ E +K+ IP L+ + S +A
Sbjct: 418 SFLASELEDNPNLKPVLIITPASLLYNWQSELEKFAPAIPVTVLHGTKQS------RMAE 471
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
M+ KRG V LI Y L I+ + F + + DE
Sbjct: 472 MEEMKRGH--VYLISYPSLRQ-----DIVHFADVAFSSV-----------------IIDE 507
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR
Sbjct: 508 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKF---- 563
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+EI A +I + +KEL +KI T L L + ++ +
Sbjct: 564 KEIPYDNIAKMIRPF--LLRRLKQDVVKELPDKIE--------TNLYSELTDEQKTIYLA 613
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQQFFESFDVDSAKLARLK 415
++ Q L +A G + L + PSL F E++ +S KL +L
Sbjct: 614 YLEKIQADL-EASNGNAGEERIKLLAGLTRLRQICCDPSL----FVENYQGESGKLLQL- 667
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
F I +++L+FSQ+ L +I ++L EGQ + YMDGK
Sbjct: 668 ----------FDTIQTARENGKRILLFSQFTGMLGIIRQKLEE-----EGQPLFYMDGKT 712
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
K R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA RA
Sbjct: 713 PSKTRLDMVNAFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRA 770
Query: 536 YRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+R+GQKRVV V+ +IT T+E Q +K
Sbjct: 771 HRIGQKRVVQVFRMITKGTIEERIFELQKKK 801
>gi|386053896|ref|YP_005971454.1| helicase [Listeria monocytogenes Finland 1998]
gi|346646547|gb|AEO39172.1| helicase [Listeria monocytogenes Finland 1998]
Length = 1072
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 141/501 (28%), Positives = 216/501 (43%), Gaps = 88/501 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 608 LPKGLKAELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 652
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV II P S+L W+ E +K+ IP L+ + S +A
Sbjct: 653 SFLASELEDNPNLKPVLIITPASLLYNWQSELEKFAPAIPVTVLHGTKQS------RMAE 706
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
M+ KRG V LI Y L I+ + F + + DE
Sbjct: 707 MEEMKRGH--VYLISYPSLRQ-----DIVHFADVAFSSV-----------------IIDE 742
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR
Sbjct: 743 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKF---- 798
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+EI A +I + +KEL +KI T L L + ++ +
Sbjct: 799 KEIPYDNIAKMIRPF--LLRRLKQDVVKELPDKIE--------TNLYSELTDEQKTIYLA 848
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQQFFESFDVDSAKLARLK 415
++ Q L +A G + L + PSL F E++ +S KL +L
Sbjct: 849 YLEKIQADL-EASNGNAGEERIKLLAGLTRLRQICCDPSL----FVENYQGESGKLLQL- 902
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
F I +++L+FSQ+ L++I ++L +GQ + YMDGK
Sbjct: 903 ----------FDTIQTARENGKRILIFSQFTGMLSIIRQKLEE-----DGQTLFYMDGKT 947
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
K R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA RA
Sbjct: 948 PSKTRLDMVNAFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRA 1005
Query: 536 YRLGQKRVVHVYHLITSETLE 556
+R+GQKRVV V+ +IT T+E
Sbjct: 1006 HRIGQKRVVQVFRMITKGTIE 1026
>gi|341890749|gb|EGT46684.1| hypothetical protein CAEBREN_05565 [Caenorhabditis brenneri]
Length = 1728
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 152/548 (27%), Positives = 244/548 (44%), Gaps = 79/548 (14%)
Query: 75 REGFEFIWKNIAGGI-------DLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
RE +E + GG ++ L++ STG I++ G GKT +L FL +
Sbjct: 575 REKYETQPDYVTGGTLHPYQLEGINWLRHCWSTG--TDAILADEMGLGKTIQSLTFLYSL 632
Query: 128 MKLHPRCRPVIIA-PRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDN--- 183
MK P +IA P S + WE E ++W D FY + +G + V + DN
Sbjct: 633 MKEGHSMGPFLIAAPLSTIRNWEREAEQWCPD--FYVIT---YTGNAESREV-IRDNEFS 686
Query: 184 ---RKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE--LSGILLDLPGLFVF 238
+ GK+ IR + +L SY ++++ D+ LS I D V
Sbjct: 687 FAEKAVRAGKLSRIRNQNSLKFH----VLLTSY----EIINNDKAILSSINWDA---LVV 735
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK 298
DE H +N+++ FK L + R++L+GTP QNN EL + L+ + + L T +
Sbjct: 736 DEAHRLKNNESLFFKNLLDYRFSYRLLLTGTPLQNNLDELFHLLNFLSPDRFNELETFKA 795
Query: 299 SGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
EISK + + ++ H L+ LK +V G + L +R +
Sbjct: 796 ELSEISKEDQINKLHAL--LGPH----MLRRLK------ADVLTGMPTKSELI-VRVELS 842
Query: 359 ILQPDEFQKRLCKAVEGVKS-----------FVELNYCVSLLSVHPSLLPQQFFESFDVD 407
+Q ++ L + E + VEL C + HP L F ++
Sbjct: 843 PMQKTYYKNILTRNFEALNVKNGAQVSLNNILVELKKCCN----HPYL-----FAKASIE 893
Query: 408 SAKLARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFN 461
+ K + E IK ILL+ +VL+FSQ +T++++ L F
Sbjct: 894 APKRQDSYYEGEDLIKNSGKFILLQKMMRKLKDGGHRVLIFSQ----MTMMLDILED-FC 948
Query: 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDV 521
E + +DG +KRQ +I+ NDP SQA + L ST+A GINL A V++ D
Sbjct: 949 HNEDYQFERIDGNITGEKRQEAIDRFNDPESQAFVFLLSTRAGGLGINLATADTVIIYDS 1008
Query: 522 VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGG 581
WNP + QA+SRA+RLGQK V +Y +T ++E +K+ +++V + G
Sbjct: 1009 DWNPHNDTQALSRAHRLGQKNKVMIYRFVTKNSVEERITSVAKKKMLLTHLVVRAGRGAK 1068
Query: 582 NDQTTASE 589
++ + SE
Sbjct: 1069 EEKMSKSE 1076
>gi|397503175|ref|XP_003822207.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5 [Pan paniscus]
Length = 1957
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 703 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 747
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 748 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 806
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 807 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 856
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 857 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 916
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 917 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 958
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 959 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 1012
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 1013 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1067
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1068 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1127
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1128 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1187
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1188 TKQE-LDDILKFGTEELFKDDVEGMMS 1213
>gi|24308089|ref|NP_056372.1| chromodomain-helicase-DNA-binding protein 5 [Homo sapiens]
gi|51701343|sp|Q8TDI0.1|CHD5_HUMAN RecName: Full=Chromodomain-helicase-DNA-binding protein 5;
Short=CHD-5; AltName: Full=ATP-dependent helicase CHD5
gi|19773960|gb|AAL98962.1|AF425231_1 chromodomain helicase DNA binding protein 5 [Homo sapiens]
gi|119591922|gb|EAW71516.1| chromodomain helicase DNA binding protein 5 [Homo sapiens]
gi|148922387|gb|AAI46382.1| Chromodomain helicase DNA binding protein 5 [synthetic construct]
gi|151555557|gb|AAI48804.1| Chromodomain helicase DNA binding protein 5 [synthetic construct]
gi|261857536|dbj|BAI45290.1| Chromodomain-helicase-DNA-binding protein 5 [synthetic construct]
Length = 1954
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 700 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 744
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 745 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 803
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 804 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 853
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 854 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 913
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 914 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 955
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 956 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 1009
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 1010 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1064
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1065 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1124
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1125 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1184
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1185 TKQE-LDDILKFGTEELFKDDVEGMMS 1210
>gi|380787663|gb|AFE65707.1| chromodomain-helicase-DNA-binding protein 5 [Macaca mulatta]
Length = 1954
Score = 135 bits (341), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 700 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 744
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 745 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 803
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 804 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 853
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 854 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 913
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 914 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 955
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 956 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 1009
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 1010 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1064
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1065 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1124
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1125 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1184
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1185 TKQE-LDDILKFGTEELFKDDVEGMMS 1210
>gi|347549034|ref|YP_004855362.1| putative SNF2-type helicase [Listeria ivanovii subsp. ivanovii PAM
55]
gi|346982105|emb|CBW86095.1| Putative SNF2-type helicase [Listeria ivanovii subsp. ivanovii PAM
55]
Length = 1072
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 142/512 (27%), Positives = 221/512 (43%), Gaps = 90/512 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 608 LPSGLKTELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 652
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV I+ P S+L W+ E +K+ IP L+ + S +
Sbjct: 653 SFLASELEDNPNLKPVLIVTPASLLYNWQSELEKFAPMIPVSVLHGTKES--------RM 704
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
++ ++ RG V LI Y L IL LS F ++ DE
Sbjct: 705 VEMKEMKRGHVYLISYPSLRQ-----DILNLSDVAFSSVI-----------------IDE 742
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR ++
Sbjct: 743 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKFKEIP 802
Query: 301 RE-ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI 359
E I+K L+ + + + +KEL +KI T L L + ++ +
Sbjct: 803 YENIAKMIRPFLLRRLKQ-------DVVKELPDKIE--------TNLYSELTDEQKTIYL 847
Query: 360 LQPDEFQKRLCKAV-----EGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARL 414
++ Q L ++ E +K L + + PSL F E++ +S KL +L
Sbjct: 848 AYLEKIQADLEESSGNASEERIKLLAGLTR-LRQICCDPSL----FVENYQGESGKLLQL 902
Query: 415 KLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGK 474
F I +++L+FSQ+ L +I +L +GQ YMDGK
Sbjct: 903 -----------FDTIQTARENGKRILIFSQFTGMLAIIRRKLEE-----DGQTFFYMDGK 946
Query: 475 QDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISR 534
K R +N N + I L S KA G+NLVGA V+L D+ WNP VE QA R
Sbjct: 947 TPAKTRLDMVNSFN--GGENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGR 1004
Query: 535 AYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
A+R+GQKRVV V+ +IT T+E Q +K
Sbjct: 1005 AHRIGQKRVVQVFRMITKGTIEERIFDLQKKK 1036
>gi|348530512|ref|XP_003452755.1| PREDICTED: chromodomain-helicase-DNA-binding protein 4 [Oreochromis
niloticus]
Length = 1950
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 143/519 (27%), Positives = 228/519 (43%), Gaps = 95/519 (18%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 722 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 766
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV------ALMD 182
+ H + ++ AP S ++ WE EF+ W D+ G +++ AV + D
Sbjct: 767 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY-----VGDKDSRAVIRENEFSFED 821
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFV 237
N RG K R K S K F L++ EL I + + G V
Sbjct: 822 NAVRGGKKAS--RLKKDVSIK------------FHVLLTSYELITIDMAVLGSIDWACLV 867
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DE H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E R
Sbjct: 868 VDEAHRLKNNQSKFFRVLNNYSLQHKLLLTGTPLQNNLEELFHLLNFLTPE--------R 919
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
S EI + A + ++++K+L + + P + + + +P +
Sbjct: 920 FSNLEIFLEEFADIAK----------EDQIKKLHDMLGPHMLRRLKADVFKHMPSKTELI 969
Query: 358 VILQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFES 403
V ++ + QK+ K + K+F LN VSLL+V HP L P E+
Sbjct: 970 VRVELSQLQKKYYKFIL-TKNFEALNTKGGGNQVSLLNVVMDLKKCCNHPYLFPGAAMEA 1028
Query: 404 FDVDSAKLARLKLDPEAGIKTRFLLILLEL------STNEKVLVFSQYIEPLTLIMEQLR 457
K+ D A IK+ L+LL+ +VLVFSQ + L L+ + L
Sbjct: 1029 -----PKMPNGMYDGNALIKSSGKLMLLQKMMRKLKEGGHRVLVFSQMTKMLDLLEDFLE 1083
Query: 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
+ EG + +DG RQ +I+ N P +Q L ST+A GINL A V+
Sbjct: 1084 N-----EGYKYERIDGGITGGMRQEAIDRFNAPGAQQFAFLLSTRAGGLGINLATADTVI 1138
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
+ D WNP + QA SRA+R+GQ + V +Y +T ++E
Sbjct: 1139 IYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTKASVE 1177
>gi|440908595|gb|ELR58598.1| Chromodomain-helicase-DNA-binding protein 5, partial [Bos grunniens
mutus]
Length = 1920
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 675 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 719
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 720 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 778
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 779 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 828
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 829 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 888
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 889 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 930
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 931 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 984
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 985 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1039
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1040 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1099
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1100 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1159
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1160 TKQE-LDDILKFGTEELFKDDVEGMMS 1185
>gi|402852746|ref|XP_003891074.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5 isoform 1
[Papio anubis]
Length = 1954
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 700 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 744
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 745 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 803
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 804 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 853
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 854 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 913
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 914 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 955
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 956 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 1009
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 1010 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1064
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1065 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1124
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1125 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1184
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1185 TKQE-LDDILKFGTEELFKDDVEGMMS 1210
>gi|449486846|ref|XP_004174324.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein 5 [Taeniopygia guttata]
Length = 2088
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 148/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 625 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 669
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 670 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 728
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ +L + V DE H +
Sbjct: 729 SGKKV--FRMKKEAQIKFH--VLLTSY----ELITIDQ--AVLGSIEWACLVVDEAHRLK 778
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 779 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 838
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 839 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 880
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 881 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 934
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 935 PNGSYDGNSLVKSSGKLMLLQKMLKKLRDGGHRVLIFSQMTKMLDLLEDFLEY-----EG 989
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 990 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1049
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1050 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1109
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1110 TKQE-LDDILKFGTEELFKDDVEGMVS 1135
>gi|52545542|emb|CAH56404.1| hypothetical protein [Homo sapiens]
Length = 1059
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 148/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 82 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 126
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 127 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 185
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 186 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 235
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 236 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 295
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 296 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 337
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 338 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 391
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ ++L+FSQ + L L+ + L + EG
Sbjct: 392 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRLLIFSQMTKMLDLLEDFLEY-----EG 446
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 447 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 506
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 507 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 566
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 567 TKQE-LDDILKFGTEELFKDDVEGMMS 592
>gi|315282593|ref|ZP_07870972.1| SNF2 family helicase [Listeria marthii FSL S4-120]
gi|313613760|gb|EFR87525.1| SNF2 family helicase [Listeria marthii FSL S4-120]
Length = 1072
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 141/501 (28%), Positives = 216/501 (43%), Gaps = 88/501 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 608 LPKGLKAELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 652
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV II P S+L W+ E +K+ IP L+ + S +A
Sbjct: 653 SFLASELEDNPNLKPVLIITPASLLYNWQSELEKFAPAIPVTVLHGTKQS------RMAE 706
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
M+ KRG V LI Y L I+ + F + + DE
Sbjct: 707 MEEMKRGH--VYLISYPSLRQ-----DIVHFADVAFSSV-----------------IIDE 742
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR
Sbjct: 743 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKF---- 798
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+EI A +I + +KEL +KI T L L + ++ +
Sbjct: 799 KEIPYDNIAKMIRPF--LLRRLKQDVVKELPDKIE--------TNLYSELTDEQKTIYLA 848
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQQFFESFDVDSAKLARLK 415
++ Q L +A G + L + PSL F E++ +S KL +L
Sbjct: 849 YLEKIQADL-EASNGNAGEERIKLLAGLTRLRQICCDPSL----FVENYQGESGKLLQL- 902
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
F I +++L+FSQ+ L++I ++L +GQ + YMDGK
Sbjct: 903 ----------FDTIQTARENGKRILIFSQFTGMLSIIRQKLEE-----DGQTLFYMDGKT 947
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
K R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA RA
Sbjct: 948 PSKTRLDMVNAFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRA 1005
Query: 536 YRLGQKRVVHVYHLITSETLE 556
+R+GQKRVV V+ +IT T+E
Sbjct: 1006 HRIGQKRVVQVFRMITKGTIE 1026
>gi|345800756|ref|XP_546747.3| PREDICTED: chromodomain-helicase-DNA-binding protein 5 [Canis lupus
familiaris]
Length = 1986
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 737 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 781
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 782 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 840
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 841 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 890
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 891 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 950
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 951 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 992
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 993 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 1046
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 1047 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1101
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1102 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1161
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1162 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1221
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1222 TKQE-LDDILKFGTEELFKDDVEGMMS 1247
>gi|406867495|gb|EKD20533.1| DNA repair and recombination protein RAD26 [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 945
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 151/560 (26%), Positives = 239/560 (42%), Gaps = 97/560 (17%)
Query: 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP 132
HQREG +F+++ + G D D G G +++ G GKT T+ L +K +P
Sbjct: 290 HQREGVKFMYECVMGIRDYD----------GRGALLADEMGLGKTLQTICLLWTLLKQNP 339
Query: 133 -------RCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGA-VALMDNR 184
+ +I+ P +++ W++EF KW G E G V N+
Sbjct: 340 IHGSDPVVKKALIVCPVTLIDNWKKEFNKW--------------LGNERIGVFVEGGQNK 385
Query: 185 KRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL--VSGDELSGILLDLPGLFVFDEGH 242
KR K+ + K YS I+G +E+L V D G +D+ + DEGH
Sbjct: 386 KR---KITDFTHGKSYS----VMIIG-----YERLRSVHDDLKKGAGIDI---VIADEGH 430
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+ A+ + T RR+ILSGTP QN+ E + + T +K
Sbjct: 431 RLKTAQNKSALAIRNLNTDRRVILSGTPMQNDLSEFFTMVDFINPGLLGKYNTFKKEF-- 488
Query: 303 ISKAKHASLISSIGRCANHRDDEKL----KELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
++ S A+ +D EK +EL F+ +L + L VV
Sbjct: 489 -----EGPILKSRQPEASAKDIEKGAARGEELTMLTKTFILRRTAEILSKYLKSKTEYVV 543
Query: 359 ILQPDEFQKRLC----------KAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDS 408
+P + Q + KA+ ++ ++L + + PSLL Q+ D S
Sbjct: 544 FCKPTQAQAEIYQHIIASPFFGKALGTSEASLQLITILKKVCNAPSLLMQKA----DAPS 599
Query: 409 AKLARLKLD--PE---------AGIKTRFLLILLEL---STNEKVLVFSQYIEPLTLIME 454
L LD P A K R L LL+ +T EKV++ S Y L L+ +
Sbjct: 600 NPLVAALLDVIPRELMQKSNAIASAKFRVLDQLLKCISTTTTEKVVIVSNYTSTLDLVGQ 659
Query: 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDP-SSQARIMLASTKACCEGINLVGA 513
L L +DGK K RQ ++ N +S+ L S K+ G+NLVGA
Sbjct: 660 HLTSM-----SLPFLRLDGKTAQKSRQGLVDTFNKTDASKTFAFLLSAKSGGSGLNLVGA 714
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
SR++L DV WNP ++QA++R +R GQKR V +Y + + ++ +RQ K ++ V
Sbjct: 715 SRLILFDVDWNPATDQQAMARIHRDGQKRPVKIYRFVLAGGMDEKIYQRQVTKTGLADSV 774
Query: 574 FPSSDGGGNDQTTASEPLED 593
DG ++ + ++ L D
Sbjct: 775 V---DGKKSEGSFTAQELRD 791
>gi|410903295|ref|XP_003965129.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like
[Takifugu rubripes]
Length = 1689
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 135/504 (26%), Positives = 223/504 (44%), Gaps = 85/504 (16%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W
Sbjct: 490 GNSCILADEMGLGKTIQTICFLNYMFNEHQLYGPFLLVVPLSTLTSWQREIQLWA----- 544
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
P++ N V L D R + ++ ++S KM IL +Y + K S
Sbjct: 545 -----PQM-----NVVVYLGD--ISSRNMIRTHEWIHVHSKKMKFNILLTTYEILLKDKS 592
Query: 222 GDELSGILLDLPGLFV-FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELEN 280
L + F+ DE H +NDD+ ++K + K+ R++++GTP QN+ +EL +
Sbjct: 593 ------FLGSVNWAFIGVDEAHRLKNDDSLLYKTMMEFKSNHRLLITGTPLQNSLKELWS 646
Query: 281 TLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNV 340
L + + + E+ + +H GR D L +++ PF+
Sbjct: 647 LLHFIMPD--------KFHSWELFEEEHGK-----GR------DSGYTSLHKELEPFLLR 687
Query: 341 HKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-----FVEL- 382
+++SLP LR + +Q ++ K L K V+G S +EL
Sbjct: 688 RVKKDVEKSLPAKVEQILRVEMSAIQKQYYKWILTRNYKALSKGVKGSTSGFLNIMMELK 747
Query: 383 ---NYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKV 439
N+C + L + + S KL L LLI L+ +V
Sbjct: 748 KCCNHCYLIRLPEDDLNKTEALQQLVRSSGKLVLLDK----------LLIRLK-ERGHRV 796
Query: 440 LVFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIM 497
L+FSQ + L ++ + LR R + L+ +DG + R+ +++ N S+
Sbjct: 797 LIFSQMVRMLDILADYLRSR-------QFLFQRLDGSIKGEMRKQALDHFNAEGSEDFCF 849
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L ST+A GINL A VV+ D WNP + QA +RA+R+GQKR V++Y L+T ++E
Sbjct: 850 LLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKRQVNIYRLVTKGSVEE 909
Query: 558 DKLRRQARKVWWSNMVFPSSDGGG 581
D + R +K+ ++V D G
Sbjct: 910 DIIERAKKKMVLDHLVIQRMDTTG 933
>gi|70996252|ref|XP_752881.1| dsDNA-dependent ATPase (Rad54b) [Aspergillus fumigatus Af293]
gi|66850516|gb|EAL90843.1| dsDNA-dependent ATPase (Rad54b), putative [Aspergillus fumigatus
Af293]
Length = 969
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 145/543 (26%), Positives = 222/543 (40%), Gaps = 89/543 (16%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQREG +F+++ + G + G G I++ G GKT T+ L
Sbjct: 284 KHLRQHQREGVQFLYECVMGMRSFN----------GEGAILADDMGLGKTLQTITLLWTL 333
Query: 128 MKLHP--RCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P PVI + P +++ W +EF+KW G E G
Sbjct: 334 LKQNPIHESPPVIKKALIVCPVTLINNWRKEFRKW--------------LGNERIGVFVF 379
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTG----ILGLSYRLFEKLVSGDE--LSGILLDLPG 234
D RKR L + MG I+G +EKL + E G +D+
Sbjct: 380 DDKRKR------------LTDFTMGRAYSVMIVG-----YEKLRTVQEGLARGAGVDI-- 420
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGEVL 293
+ DEGH + +A+ + +RIILSGTP QN+ +E + LV G
Sbjct: 421 -IIADEGHRLKTLQNKSGQAIQSLNATKRIILSGTPIQNDLKEFFAAVDLVNPGILGNFK 479
Query: 294 RTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGL 353
VR+ I K++ R++E L+EL K F+ +L + LP
Sbjct: 480 AFVREFEGPIVKSRQPEATKKEIEKGEARNEE-LRELTSK---FMLRRTVDILAKYLPPK 535
Query: 354 RHSVVILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSVHPSLL------- 396
V+ P Q + K A+ ++ ++L + L PSLL
Sbjct: 536 TEYVLFCNPTSTQATIYKNVLASPVFQCAIGNSENALQLITILKKLCNSPSLLSPKTGDE 595
Query: 397 -PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPLTLI 452
P + + P K R L LL ST+EK+++ S Y
Sbjct: 596 RPSETITALLSSLPPNLLRHFTPSCSAKIRVLDQLLHNLRTSTSEKIVLVSNYTS----- 650
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND-PSSQARIMLASTKACCEGINLV 511
L L +DG +KRQ+ + N P ++ L S KA G+NL+
Sbjct: 651 TLNLLANLLNSLSLPFLRLDGSTPAQKRQALVEDFNRLPPNRCFAFLLSAKAGGTGLNLI 710
Query: 512 GASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSN 571
GASR+VL DV WNP + QA++R +R GQKR +Y ++ +LE +RQ K+ ++
Sbjct: 711 GASRLVLFDVDWNPATDVQAMARIHRDGQKRHCRIYRILLKGSLEEKIWQRQVTKIGLAD 770
Query: 572 MVF 574
V
Sbjct: 771 SVM 773
>gi|338722190|ref|XP_001492263.3| PREDICTED: chromodomain-helicase-DNA-binding protein 5 [Equus
caballus]
Length = 1930
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 676 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 720
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 721 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 779
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 780 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 829
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 830 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 889
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 890 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 931
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 932 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 985
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 986 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1040
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1041 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1100
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1101 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1160
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1161 TKQE-LDDILKFGTEELFKDDVEGMMS 1186
>gi|386043956|ref|YP_005962761.1| hypothetical protein [Listeria monocytogenes 10403S]
gi|404410948|ref|YP_006696536.1| Snf2 family helicase [Listeria monocytogenes SLCC5850]
gi|404413724|ref|YP_006699311.1| Snf2 family helicase [Listeria monocytogenes SLCC7179]
gi|345537190|gb|AEO06630.1| hypothetical protein LMRG_01322 [Listeria monocytogenes 10403S]
gi|404230774|emb|CBY52178.1| helicase, Snf2 family [Listeria monocytogenes SLCC5850]
gi|404239423|emb|CBY60824.1| helicase, Snf2 family [Listeria monocytogenes SLCC7179]
Length = 1072
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 144/511 (28%), Positives = 218/511 (42%), Gaps = 88/511 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 608 LPKGLKAELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 652
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV II P S+L W+ E +K+ IP L+ + S +A
Sbjct: 653 SFLASELEDNPNLKPVLIITPASLLYNWQSELEKFAPAIPVTVLHGTKQS------RMAE 706
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
M+ KRG V LI Y L I+ + F + + DE
Sbjct: 707 MEEMKRGH--VYLISYPSLRQ-----DIVHFADVAFSSV-----------------IIDE 742
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR
Sbjct: 743 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKF---- 798
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+EI A +I + +KEL +KI T L L + ++ +
Sbjct: 799 KEIPYDNIAKMIRPF--LLRRLKQDVVKELPDKIE--------TNLYSELTDEQKTIYLA 848
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQQFFESFDVDSAKLARLK 415
++ Q L +A G + L + PSL F E++ +S KL +L
Sbjct: 849 YLEKIQADL-EASNGNAGEERIKLLAGLTRLRQICCDPSL----FVENYQGESGKLLQL- 902
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
F I +++L+FSQ+ L +I ++L EGQ + YMDGK
Sbjct: 903 ----------FDTIQTARENGKRILLFSQFTGMLGIIRQKLEE-----EGQPLFYMDGKT 947
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
K R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA RA
Sbjct: 948 PSKTRLDMVNAFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRA 1005
Query: 536 YRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+R+GQKRVV V+ +IT T+E Q +K
Sbjct: 1006 HRIGQKRVVQVFRMITKGTIEERIFELQKKK 1036
>gi|410966154|ref|XP_003989600.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5 [Felis catus]
Length = 2003
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 726 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 770
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 771 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 829
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 830 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 879
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 880 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 939
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 940 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 981
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 982 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 1035
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 1036 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1090
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1091 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1150
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1151 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1210
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1211 TKQE-LDDILKFGTEELFKDDVEGMMS 1236
>gi|359074223|ref|XP_002694217.2| PREDICTED: chromodomain-helicase-DNA-binding protein 5 [Bos taurus]
Length = 2042
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 788 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 832
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 833 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 891
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 892 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 941
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 942 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 1001
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 1002 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 1043
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 1044 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 1097
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 1098 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1152
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1153 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1212
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1213 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1272
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1273 TKQE-LDDILKFGTEELFKDDVEGMMS 1298
>gi|296479122|tpg|DAA21237.1| TPA: chromodomain helicase DNA binding protein 5 [Bos taurus]
Length = 2099
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 788 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 832
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 833 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 891
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 892 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 941
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 942 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 1001
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 1002 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 1043
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 1044 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 1097
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 1098 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1152
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1153 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1212
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1213 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1272
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1273 TKQE-LDDILKFGTEELFKDDVEGMMS 1298
>gi|52545633|emb|CAH56377.1| hypothetical protein [Homo sapiens]
Length = 1061
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 148/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 75 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 119
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 120 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 178
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 179 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 228
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 229 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 288
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 289 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 330
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 331 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 384
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ ++L+FSQ + L L+ + L + EG
Sbjct: 385 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRLLIFSQMTKMLDLLEDFLEY-----EG 439
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 440 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 499
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 500 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 559
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 560 TKQE-LDDILKFGTEELFKDDVEGMMS 585
>gi|16803684|ref|NP_465169.1| hypothetical protein lmo1644 [Listeria monocytogenes EGD-e]
gi|404284140|ref|YP_006685037.1| Snf2 family helicase [Listeria monocytogenes SLCC2372]
gi|405758695|ref|YP_006687971.1| Snf2 family helicase [Listeria monocytogenes SLCC2479]
gi|16411080|emb|CAC99722.1| lmo1644 [Listeria monocytogenes EGD-e]
gi|404233642|emb|CBY55045.1| helicase, Snf2 family [Listeria monocytogenes SLCC2372]
gi|404236577|emb|CBY57979.1| helicase, Snf2 family [Listeria monocytogenes SLCC2479]
Length = 1072
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 144/511 (28%), Positives = 218/511 (42%), Gaps = 88/511 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 608 LPKGLKAELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 652
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV II P S+L W+ E +K+ IP L+ + S +A
Sbjct: 653 SFLASELEDNPNLKPVLIITPASLLYNWQSELEKFAPAIPVTVLHGTKQS------RMAE 706
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
M+ KRG V LI Y L I+ + F + + DE
Sbjct: 707 MEEMKRGH--VYLISYPSLRQ-----DIVHFADVAFSSV-----------------IIDE 742
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR
Sbjct: 743 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKF---- 798
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+EI A +I + +KEL +KI T L L + ++ +
Sbjct: 799 KEIPYDNIAKMIRPF--LLRRLKQDVVKELPDKIE--------TNLYSELTDEQKTIYLA 848
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQQFFESFDVDSAKLARLK 415
++ Q L +A G + L + PSL F E++ +S KL +L
Sbjct: 849 YLEKIQADL-EASNGNAGEERIKLLAGLTRLRQICCDPSL----FVENYQGESGKLLQL- 902
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
F I +++L+FSQ+ L +I ++L EGQ + YMDGK
Sbjct: 903 ----------FDTIQTARENGKRILLFSQFTGMLGIIRQKLEE-----EGQPLFYMDGKT 947
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
K R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA RA
Sbjct: 948 PSKTRLDMVNAFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRA 1005
Query: 536 YRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+R+GQKRVV V+ +IT T+E Q +K
Sbjct: 1006 HRIGQKRVVQVFRMITKGTIEERIFELQKKK 1036
>gi|320164602|gb|EFW41501.1| SNF2 family DNA-dependent ATPase [Capsaspora owczarzaki ATCC 30864]
Length = 2139
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 144/524 (27%), Positives = 230/524 (43%), Gaps = 78/524 (14%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQ---AYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDI 159
G CI++ G GKT T+ FL+ A +LHP +++ P S+ WE EF +W D
Sbjct: 591 GVNCILADEMGLGKTIQTVSFLRSVYAQTQLHPF---LVVTPLSLCSNWEREFGRWTPD- 646
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGT----GILGLSYRL 215
LN +G + + V + + R S G +L SY +
Sbjct: 647 ----LNVIVYTGSQESRQV--LRQHECFRASSSSNNTTTTGSGSQGRVPKFHVLVTSYEI 700
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
L L IL + V DEGH +N ++ +FKAL R++L+GTP QNN
Sbjct: 701 L--LADMSFLKSILWEE---LVVDEGHRLKNQESKLFKALQAFNIAHRLLLTGTPLQNNL 755
Query: 276 QELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELK---- 331
QEL N + + E E R I+ A + R + L+ LK
Sbjct: 756 QELFNLMCFLDYEKFEQQREFIVDETLITSAPDEDTTDRVRRLHDMLRPHILRRLKDDVL 815
Query: 332 EKIAP-------------------------FVNVHKGTVLQESLPGLRHSVVILQPDEFQ 366
+ I P + +++G +Q+ + G + S+V+ QP +
Sbjct: 816 QDIPPKTELVVPCKMSALQRQYYRAILTRNYAALNQG--VQQVITGTKSSMVV-QPQQ-- 870
Query: 367 KRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRF 426
+ V + +EL C + HP L P E F DSA++A ++ ++ ++
Sbjct: 871 ----QRVTLMNILMELRKCTN----HPYLFPGAEPE-FAGDSAEVADMQA--QSLVQASG 919
Query: 427 LLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKR 480
L+LL+ + +VL+FSQ L ++ + L H +DG R
Sbjct: 920 KLVLLDKMLPGLRARGHRVLIFSQMTRVLDILEDYLSHL-----QMPFCRLDGSTLNTDR 974
Query: 481 QSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQ 540
Q I+ N P+S L ST+A GINL A +++ D +NP + QA+SRA+R+GQ
Sbjct: 975 QHLIDKFNAPNSPIFCFLLSTRAGGLGINLHTADTIIMFDSDFNPHSDMQALSRAHRIGQ 1034
Query: 541 KRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQ 584
K+ V VY L+TS+T+E L+R +K+ ++V + G + Q
Sbjct: 1035 KKPVTVYRLVTSDTIEEGILQRARKKLLLGHVVVEKLEDGIDAQ 1078
>gi|395841073|ref|XP_003793373.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5 [Otolemur
garnettii]
Length = 2088
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 838 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 882
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 883 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 941
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 942 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 991
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 992 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 1051
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 1052 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 1093
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 1094 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 1147
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 1148 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1202
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1203 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1262
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1263 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1322
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1323 TKQE-LDDILKFGTEELFKDDVEGMMS 1348
>gi|344282967|ref|XP_003413244.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5 [Loxodonta
africana]
Length = 2101
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 724 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 768
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 769 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 827
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 828 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 877
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 878 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 937
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 938 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 979
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 980 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 1033
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 1034 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1088
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1089 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1148
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1149 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1208
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1209 TKQE-LDDILKFGTEELFKDDVEGMMS 1234
>gi|302655807|ref|XP_003019687.1| hypothetical protein TRV_06277 [Trichophyton verrucosum HKI 0517]
gi|291183425|gb|EFE39042.1| hypothetical protein TRV_06277 [Trichophyton verrucosum HKI 0517]
Length = 629
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 142/553 (25%), Positives = 227/553 (41%), Gaps = 110/553 (19%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
P +++K++ Q+ EF+++ G +D KN+ +GCI++
Sbjct: 58 CPATLKRKLWQPQKS--EFLYRCTTGLVD----KNA------HGCIMADVQ--------- 96
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW-GIDI--PFY---NLNKPELSGKENN 175
+ VI P +++ W E KW G D PF +K EL+ +
Sbjct: 97 -------------KAVIACPATLVGNWANELVKWLGKDAINPFVIDGKASKTELTSQLRQ 143
Query: 176 GAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGL 235
A+A GR V + V + +M + DEL + GL
Sbjct: 144 WAIA------SGRSVVRPVLIVSYETLRMNS----------------DELRDTQI---GL 178
Query: 236 FVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-------RQE 288
+ DEGH +N D+ + AL+++ ++R+ILSGTP QN+ E + L R E
Sbjct: 179 LLCDEGHRLKNADSQTYVALNKLNVQKRVILSGTPIQNDLSEYFSLLDFANPGILGSRSE 238
Query: 289 FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQE 348
F + GR+ + +E+L EL + F+ +L +
Sbjct: 239 FHKTYEIPILRGRDADGTDE----------QQKKGNERLAELLNLVNKFIIRRSNDLLSK 288
Query: 349 SLPGLRHSVVILQPDEFQKRLCKAV---EGVKSFVELNYCVSLLSV--------HPSLLP 397
LP VV FQ L +KS + L ++ HP LL
Sbjct: 289 YLPVKYEHVVFCNLAPFQLDLYNHFIQSPEIKSLLRGKGSQPLKAIGILKKLCNHPDLLK 348
Query: 398 ---------QQFFESFDVDSAKLARLKLDPEAGIKTRFL---LILLELSTNEKVLVFSQY 445
Q F E V + + ++ K L L + TN+K+++ S Y
Sbjct: 349 LSEDLPGCEQYFPEDMTVSNGRRGDREVKTWYSGKMMVLDRMLARIRQDTNDKIVLISNY 408
Query: 446 IEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACC 505
+ L L R R + +DG VKKR ++ NDP+ + + L S+KA
Sbjct: 409 TQTLDLFERLCRAR-----AYGCIRLDGTMGVKKRSKLVDKFNDPNGEEFVFLLSSKAGG 463
Query: 506 EGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQAR 565
GINLVGA+R+VL D WNP ++QA++R +R GQ + VY I + T+E +RQ+
Sbjct: 464 CGINLVGANRLVLFDPDWNPAADQQALARVWRDGQSKDCFVYRFIATGTIEEKIFQRQSH 523
Query: 566 KVWWSNMVFPSSD 578
K S+ V S++
Sbjct: 524 KQSLSSCVVDSAE 536
>gi|403297789|ref|XP_003939734.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5 [Saimiri
boliviensis boliviensis]
Length = 2203
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 950 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 994
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 995 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 1053
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 1054 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 1103
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 1104 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 1163
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 1164 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 1205
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 1206 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 1259
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 1260 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1314
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1315 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1374
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1375 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1434
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1435 TKQE-LDDILKFGTEELFKDDVEGMMS 1460
>gi|168061453|ref|XP_001782703.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
patens]
gi|162665796|gb|EDQ52468.1| SNF2 family DNA-dependent ATPase [Physcomitrella patens subsp.
patens]
Length = 2113
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 138/497 (27%), Positives = 222/497 (44%), Gaps = 70/497 (14%)
Query: 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLN 165
I++ G GKT + F+ A + +PV +I P+S L+ WE+EF +WG D+
Sbjct: 899 ILADEMGLGKTIQAVSFIMALKYENLSNKPVLVIGPKSTLVGWEQEFGQWGADL------ 952
Query: 166 KPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225
N + D R +IR + ++ + LF+ LV+ +L
Sbjct: 953 ---------NTVIYQGDKESRT-----MIRNYEFFTRE--------KIPLFDVLVTSYDL 990
Query: 226 SGILLDLPGL-------FVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
+ +LD L + DEGH +N + + L R K R++L+GTP QN EL
Sbjct: 991 A--MLDSSLLEKMDWACIIVDEGHRVKNTRSKLGILLRRQKADFRLLLTGTPVQNTLTEL 1048
Query: 279 ENTLSLVRQ-EFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP- 336
L + EF + R S +E S+ S S G D+++ L + + P
Sbjct: 1049 FALLHFLDPVEFPDPER----SAQEFSQVDALSGAGSKGEGGV---DQQVSRLHKLLTPR 1101
Query: 337 FVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYC----------- 385
+ K V+Q +PG ++ V+ Q+ L A+ K++ +LN
Sbjct: 1102 MLRRLKADVMQGMIPGKKYVEVLCALTPLQRHLYGAILK-KNYKQLNRGNTTGKKRSLNF 1160
Query: 386 ----VSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLV 441
+ ++ HP L P + E D D +L RL + ++ L+ +VL+
Sbjct: 1161 ILMDLKMVCNHPYLFPGKEPEHGDAD--ELFRLLITASGKLQVLAKLLPRLKEGGHRVLL 1218
Query: 442 FSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAST 501
FSQ L ++ + L H +++ +DG RQ I N +S I L ST
Sbjct: 1219 FSQMKSMLDILEDFLSH-LDYK----FCRIDGSTPASGRQKQIADFNSANSDVFIFLIST 1273
Query: 502 KACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561
+A GINL A V++ D +NPFV+ QA +RA+R+GQ+ VV VY LIT ++E
Sbjct: 1274 RAGGLGINLPSADTVIIYDPDFNPFVDLQAQARAHRIGQRNVVLVYQLITKCSVEEKITE 1333
Query: 562 RQARKVWWSNMVFPSSD 578
R +K+ N+V SS+
Sbjct: 1334 RSRQKLAMENLVMSSSE 1350
>gi|449296949|gb|EMC92968.1| hypothetical protein BAUCODRAFT_42604, partial [Baudoinia
compniacensis UAMH 10762]
Length = 1182
Score = 135 bits (339), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 152/581 (26%), Positives = 248/581 (42%), Gaps = 93/581 (16%)
Query: 39 DSGFDSQTGCD-------PFTHAQGTVWE---LVPRDVRKKMFPHQREGFEFIWKNIAGG 88
D+G DS++G D P TV+E VP D+ +F +Q+ G +++W+ +
Sbjct: 333 DAGQDSESGVDGHEEWHMPHPTRTDTVFEGGLRVPGDIYPSLFDYQKTGVQWLWELYSQQ 392
Query: 89 IDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA-PRSMLLT 147
+ G II G GKT + FL + +P+I+ P +++
Sbjct: 393 V---------------GGIIGDEMGLGKTIQIISFLASLHYSDKLTKPIIVVCPATVMKQ 437
Query: 148 WEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTG 207
W EF +W P ++ SG ++D ++ R + L V +Y K T
Sbjct: 438 WVNEFHRW---WPPLRVSILHTSGS------GMLDIKREARIEDDL--EVDMYGRKKATM 486
Query: 208 ILG--LSYRLFEKLV----------SGDELSGILLDLPG---LFVFDEGHTPRNDDTCMF 252
G + R+ +++V SG + LL +P V DEGH RN +T +
Sbjct: 487 NKGHKAAKRIVDRVVRDGHVLVTTYSGLQTYAELL-IPTDWEYAVLDEGHKIRNPNTAIT 545
Query: 253 KALSRIKTRRRIILSGTPFQNNFQELENTLSLV-RQEFGEVLRTVRKSGREISKAKHASL 311
++T R+ILSGTP QNN EL + V G ++ + I + +A+
Sbjct: 546 IYCKELRTHNRVILSGTPMQNNLTELWSLFDFVFPMRLGTLVNFRSQFEIPIKQGGYANA 605
Query: 312 ----ISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQK 367
+ + +CA + LK+ I+P++ + LP V+ + + Q+
Sbjct: 606 SNLQVETAMKCA--------ETLKDTISPYLLQRFKVDVAADLPKKSERVLFCKLTKLQR 657
Query: 368 RLCK---AVEGVKSFV----ELNYCVSLLSV---HPSLLPQQFFESFDVDSAKLARLKLD 417
+ A E +KS + + Y V +L HP L+ + S K
Sbjct: 658 EAYEWFLASEEMKSILSGKRQALYGVDILRKICNHPDLVEHKTL------SKKAGYNYGS 711
Query: 418 PEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIME--QLRHRFNWREGQEVLYMDG 473
K + + LLE+ K L+F+Q+ L ++ Q FN+R MDG
Sbjct: 712 GHKSGKMQVVKALLEIWKRDGHKTLLFAQHRIMLDILETFIQGMDGFNYRR------MDG 765
Query: 474 KQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAIS 533
+K RQ ++ N + L +TK G+NL GA RV++ D WNP + QA
Sbjct: 766 NTSIKDRQDLVDEFN-KDQDLHVFLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDVQARE 824
Query: 534 RAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVF 574
RA+RLGQKR V +Y L+T+ T+E RQ K + +N +
Sbjct: 825 RAWRLGQKREVEIYRLMTAGTIEEKIYHRQIFKQFLTNKIL 865
>gi|422409883|ref|ZP_16486844.1| SNF2 family helicase, partial [Listeria monocytogenes FSL F2-208]
gi|313608461|gb|EFR84385.1| SNF2 family helicase [Listeria monocytogenes FSL F2-208]
Length = 966
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 142/501 (28%), Positives = 215/501 (42%), Gaps = 88/501 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 502 LPKGLKAELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 546
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV II P S+L W+ E +K+ IP L+ + S +A
Sbjct: 547 SFLASELEDNPNLKPVLIITPASLLYNWQSELEKFAPAIPVTVLHGTKQS------RMAE 600
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
M+ KRG V LI Y L I+ + F + + DE
Sbjct: 601 MEEMKRGH--VYLISYPSLRQ-----DIVHFADVAFSSV-----------------IIDE 636
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR
Sbjct: 637 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKF---- 692
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+EI A +I + +KEL +KI T L L + ++ +
Sbjct: 693 KEIPYDNIAKMIRPF--LLRRLKQDVVKELPDKIE--------TNLYSELTDEQKTIYLA 742
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQQFFESFDVDSAKLARLK 415
++ Q L +A G + L + PSL F E++ +S KL +L
Sbjct: 743 YLEKIQADL-EASNGNAGEERIKLLAGLTRLRQICCDPSL----FVENYQGESGKLLQL- 796
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
F I +++L+FSQ+ L +I ++L EGQ + YMDGK
Sbjct: 797 ----------FDTIQTARENGKRILLFSQFTGMLGIIRQKLEE-----EGQPLFYMDGKT 841
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
K R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA RA
Sbjct: 842 PSKTRLDMVNAFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRA 899
Query: 536 YRLGQKRVVHVYHLITSETLE 556
+R+GQKRVV V+ +IT T+E
Sbjct: 900 HRIGQKRVVQVFRMITKGTIE 920
>gi|426240369|ref|XP_004014081.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5 [Ovis aries]
Length = 2056
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 684 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 728
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 729 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 787
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 788 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 837
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 838 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 897
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 898 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 939
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 940 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 993
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 994 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1048
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1049 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1108
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1109 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1168
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1169 TKQE-LDDILKFGTEELFKDDVEGMMS 1194
>gi|393905983|gb|EJD74129.1| type III restriction enzyme [Loa loa]
Length = 1138
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 130/499 (26%), Positives = 221/499 (44%), Gaps = 76/499 (15%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFY 162
N CI++ G GKT ++ FL Y K +++ P S + +W+ EF+ W
Sbjct: 523 NSCILADEMGLGKTIQSISFLSVLYHKYQLYGTFLVVVPLSTIASWQREFETWA------ 576
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222
P+L+ G + D LIR +LY + + +E L+
Sbjct: 577 ----PDLNVVTYVGDITSRD----------LIRQFELYVQSTKRLKVNVVLTTYEILLKD 622
Query: 223 DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
G + DE H +ND++ ++++L T R++++GTP QN+ +EL L
Sbjct: 623 KFFLGSFE--WTVLTVDEAHRLKNDESLLYRSLFEFTTNHRLLVTGTPLQNSLKELWALL 680
Query: 283 SLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHK 342
+ E + S E H S D + + L K+ PF+
Sbjct: 681 HFIMPEKFD-------SWPEFEAEHHDS------------DHKTIASLHRKLQPFLLRRV 721
Query: 343 GTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEG-VKSFVELNYCVSLL 389
+++SLP LR + Q ++ K L K V+G + FV L +
Sbjct: 722 KKDVEKSLPAKVEQILRVDMTAQQKQYYKWILTKNYKELSKGVKGSINGFVNLVMELKKC 781
Query: 390 SVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFS 443
H SL+ + + + + A+L +L +K+ LILL+ T +VL+FS
Sbjct: 782 CNHSSLV-RSYDQPEEGADARLQQL-------LKSSGKLILLDKLLCRLQETGHRVLIFS 833
Query: 444 QYIEPLTLIMEQLR-HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTK 502
Q + L ++ E L+ RF + +DG R+++++ N P+S L ST+
Sbjct: 834 QMVMMLDIMQEYLQLRRFPSQR------LDGSMRSDLRKAALDHFNAPNSPDFCFLLSTR 887
Query: 503 ACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRR 562
A GINL A V++ D WNP + QA+SRA+R+GQK+ V++Y L+T ++E + + R
Sbjct: 888 AGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQKKQVNIYRLVTKASVEEEIVER 947
Query: 563 QARKVWWSNMVFPSSDGGG 581
RK+ +++ D G
Sbjct: 948 AKRKLVLDHLIIQRMDTTG 966
>gi|47211690|emb|CAF91815.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1369
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 139/526 (26%), Positives = 231/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 567 LHPYQLEGLNWLRFSWAQGTDT---------------ILADEMGLGKTVQTAVFLYSLYK 611
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 612 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAVIRENE--FSFEDNAI 669
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K + K T I F L++ EL I + + G V DE
Sbjct: 670 RGGKKASRM--------KKDTSIK------FHVLLTSYELITIDMAVLGSVNWACLVVDE 715
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 716 AHRLKNNQSKFFRVLNNYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFSKLEIFLEEF 775
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + + +P +V +
Sbjct: 776 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKHMPSKTELIVRV 817
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + K+F LN VSLL+V HP L P + +
Sbjct: 818 ELSSMQKKYYKFIL-TKNFEALNTKGGGNQVSLLNVVMDLKKCCNHPYLFP-----TAAI 871
Query: 407 DSAKLARLKLDPEAGIKTRFLLILLEL------STNEKVLVFSQYIEPLTLIMEQLRHRF 460
++ K+ D A K L+LL+ +VL+FSQ + L L+ + L +
Sbjct: 872 EAPKMPNGMYDGSALTKASGKLLLLQKMMRRLKEGGHRVLIFSQMTKMLDLLEDFLEN-- 929
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 930 ---EGYKYERIDGGITGGMRQEAIDRFNAPGAQQFAFLLSTRAGGLGINLATADTVIIYD 986
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ R V +Y +T ++E +++ + A+K
Sbjct: 987 SDWNPHNDIQAFSRAHRIGQNRKVMIYRFVTKASVE-ERITQVAKK 1031
>gi|452002263|gb|EMD94721.1| hypothetical protein COCHEDRAFT_1167819 [Cochliobolus
heterostrophus C5]
Length = 888
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 148/564 (26%), Positives = 239/564 (42%), Gaps = 98/564 (17%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQREG +F+++ + G G G I++ G GKT T+ L
Sbjct: 248 KHLRDHQREGVQFLYECVMG-----------MRCEGEGAIMADEMGLGKTLQTITLLWTL 296
Query: 128 MKLHP--RCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
MK +P PVI + P ++ W+ EF+KW G E G V +
Sbjct: 297 MKQNPIHDSPPVIKKALIVCPAGLVDNWKREFRKW--------------LGNERVG-VFV 341
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTG--ILGLSYRLFEKLVSGDELSGILLDLPGLFVF 238
+D + + K+ ++ MG I+ + Y + ++V + G +D + +
Sbjct: 342 LDAKNK-----------KIANFTMGKSYNIMIVGYEML-RIVQEELKKGSGVD---IVIA 386
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGEVLRTVR 297
DEGH + + A+ + T RRIILSGTP QN+ E + V G+ RT
Sbjct: 387 DEGHRLKTANNKAMLAIQSLNTERRIILSGTPLQNDLGEFYTAIDFVNPGLLGQ--RTAF 444
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
K E+ + +S + + + KEL + F+ VL + LP +
Sbjct: 445 KRSFELPIMRSRQPDASEAEL--EKGEARWKELVSLTSQFMIRRTAEVLSKYLPPKTEHI 502
Query: 358 VILQPDEFQKRLCKAVEGVKSFV----ELNYCVSLLSV------HPSLL---------PQ 398
V +P + Q +A+ +F + + L++V PSLL P
Sbjct: 503 VFCRPTKGQAETYRAILDSPTFRLALGSTDIALQLINVLKKVCNSPSLLKSSKDNDDTPS 562
Query: 399 QFFESFDV--------DSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLT 450
+ +S SA A+L+L L+ + +T EK+++ S Y L
Sbjct: 563 EMLQSIIPLIPSKILNSSASSAKLRL-------LDSLVHSIYTTTEEKIVIVSNYTTTLD 615
Query: 451 LIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND-PSSQARIMLASTKACCEGIN 509
+I E+L ++ L +DG KRQS I N P + + L S K+ G+N
Sbjct: 616 MI-ERLLVSLSY----TFLRLDGSTPASKRQSLIEKFNKTPKTTSFAFLLSAKSGGVGLN 670
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
L+GASR+VL D+ WNP + QA++R +R GQK VY + L+ +RQ K+
Sbjct: 671 LIGASRIVLFDIDWNPATDLQAMARIHRDGQKLPCKVYRFLVQGGLDEKIYQRQVMKMGL 730
Query: 570 SNMVFPSSDGGGNDQTTASEPLED 593
+N V D + + + E L D
Sbjct: 731 ANAVV---DNKASASSFSQEELRD 751
>gi|217964204|ref|YP_002349882.1| DNA/RNA helicase protein [Listeria monocytogenes HCC23]
gi|386008419|ref|YP_005926697.1| Snf2 family helicase [Listeria monocytogenes L99]
gi|386027023|ref|YP_005947799.1| DNA/RNA helicase protein [Listeria monocytogenes M7]
gi|217333474|gb|ACK39268.1| DNA/RNA helicase protein [Listeria monocytogenes HCC23]
gi|307571229|emb|CAR84408.1| helicase, Snf2 family [Listeria monocytogenes L99]
gi|336023604|gb|AEH92741.1| DNA/RNA helicase protein [Listeria monocytogenes M7]
Length = 1072
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 144/511 (28%), Positives = 218/511 (42%), Gaps = 88/511 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 608 LPKGLKAELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 652
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV II P S+L W+ E +K+ IP L+ + S +A
Sbjct: 653 SFLASELEDNPNLKPVLIITPASLLYNWQSELEKFAPAIPVTVLHGTKQS------RMAE 706
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
M+ KRG V LI Y L I+ + F + + DE
Sbjct: 707 MEEMKRGH--VYLISYPSLRQ-----DIVHFADVAFSSV-----------------IIDE 742
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR
Sbjct: 743 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKF---- 798
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+EI A +I + +KEL +KI T L L + ++ +
Sbjct: 799 KEIPYDNIAKMIRPF--LLRRLKQDVVKELPDKIE--------TNLYSELTDEQKTIYLA 848
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQQFFESFDVDSAKLARLK 415
++ Q L +A G + L + PSL F E++ +S KL +L
Sbjct: 849 YLEKIQADL-EASNGNAGEERIKLLAGLTRLRQICCDPSL----FVENYQGESGKLLQL- 902
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
F I +++L+FSQ+ L +I ++L EGQ + YMDGK
Sbjct: 903 ----------FDTIQTARENGKRILLFSQFTGMLGIIRQKLEE-----EGQPLFYMDGKT 947
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
K R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA RA
Sbjct: 948 PSKTRLDMVNAFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRA 1005
Query: 536 YRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+R+GQKRVV V+ +IT T+E Q +K
Sbjct: 1006 HRIGQKRVVQVFRMITKGTIEERIFDLQKKK 1036
>gi|2645435|gb|AAB87384.1| CHD3 [Drosophila melanogaster]
Length = 1518
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 142/522 (27%), Positives = 230/522 (44%), Gaps = 76/522 (14%)
Query: 99 STGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR-PVIIA-PRSMLLTWEEEFKKWG 156
S G G I++ G GKT T+VFL + K CR P +I+ P S L WE E + W
Sbjct: 284 SWGQGIPTILADEMGLGKTIQTVVFLYSLFK-EGHCRGPFLISVPLSTLTNWERELELWA 342
Query: 157 IDIPFYN----------LNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGT 206
++ + K E+S +E + +N+ + + V L Y
Sbjct: 343 PELYCVTYVGGKTARAVIRKHEISFEEVTTKT-MRENQTQYKFNVMLTSY---------- 391
Query: 207 GILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIIL 266
+ +S D +D L V DE H R++ + F+ LS+ + +++L
Sbjct: 392 -----------EFISVDAAFLGCIDWAALVV-DEAHRLRSNQSKFFRILSKYRIGYKLLL 439
Query: 267 SGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEK 326
+GTP QNN +EL + L+ + L+T + ++SK +E+
Sbjct: 440 TGTPLQNNLEELFHLLNFLSSGKFNDLQTFQAEFTDVSK------------------EEQ 481
Query: 327 LKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-- 384
+K L E + P + + +S+P +V ++ QK+ K + K+F LN
Sbjct: 482 VKRLHEILEPHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKFYKHIL-TKNFKALNQKG 540
Query: 385 ---CVSLLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE 432
SLL++ HP L P E+ S L +G +L +
Sbjct: 541 GGRVCSLLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYEMSSLTKASGKLDLLSKMLKQ 600
Query: 433 L-STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPS 491
L + N +VL+FSQ +T ++ L H F EG + +DG RQ +I+ NDP
Sbjct: 601 LKADNHRVLLFSQ----MTKMLNILEH-FLEGEGYQYDRIDGSIKGDLRQKAIDRFNDPV 655
Query: 492 SQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLIT 551
S+ + L ST+A GINL A V++ D WNP + QA SRA+R+GQK+ V +Y +T
Sbjct: 656 SEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVT 715
Query: 552 SETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLED 593
++E ++ K+ +++V GG + E LED
Sbjct: 716 HNSVEERIMQVAKHKMMLTHLVVRPGMGGMTTNFSKDE-LED 756
>gi|402852748|ref|XP_003891075.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5 isoform 2
[Papio anubis]
Length = 1951
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 700 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 744
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 745 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 803
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 804 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 853
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 854 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 913
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 914 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 955
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 956 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 1009
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 1010 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1064
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1065 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1124
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1125 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1184
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1185 TKQE-LDDILKFGTEELFKDDVEGMMS 1210
>gi|156717248|ref|NP_001096166.1| chromodomain helicase DNA binding protein 4 [Xenopus (Silurana)
tropicalis]
gi|126631946|gb|AAI33720.1| chd4 protein [Xenopus (Silurana) tropicalis]
Length = 1888
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 141/519 (27%), Positives = 226/519 (43%), Gaps = 95/519 (18%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 716 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 760
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV------ALMD 182
+ H + ++ AP S ++ WE EF+ W D+ G +++ AV + D
Sbjct: 761 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY-----VGDKDSRAVIRENEFSFED 815
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFV 237
N RG K R K S K F L++ EL I + + G V
Sbjct: 816 NAIRGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAVLGSIDWACLV 861
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DE H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L
Sbjct: 862 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFL 921
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
+ +I+K ++++K+L + + P + + +++P +
Sbjct: 922 EEFADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELI 963
Query: 358 VILQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFES 403
V ++ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 964 VRVELSPMQKKYYKFI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA 1022
Query: 404 FDVDSAKLARLKLDPEAGIKTRFLLILLEL------STNEKVLVFSQYIEPLTLIMEQLR 457
K+ D A IK L+LL+ +VL+FSQ + L L+ + L
Sbjct: 1023 -----PKMPNGMYDGSALIKGAGKLLLLQKMLRKLKDDGHRVLIFSQMTKMLDLLEDFLE 1077
Query: 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
H EG + +DG RQ +I+ N P +Q L ST+A GINL A VV
Sbjct: 1078 H-----EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVV 1132
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
+ D WNP + QA SRA+R+GQ + V +Y +T ++E
Sbjct: 1133 IYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1171
>gi|332265298|ref|XP_003281663.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5 [Nomascus
leucogenys]
Length = 2435
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 149/568 (26%), Positives = 251/568 (44%), Gaps = 82/568 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 1171 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 1215
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 1216 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 1274
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLF--EKLVSGDELSGILLDLPGLFVFDEGHTP 244
KV R K K +L SY L E+ + G L V DE H
Sbjct: 1275 SGKKV--FRMKKEVQIKFH--VLLTSYELITIEQAILGSIEWACL-------VVDEAHRL 1323
Query: 245 RNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREIS 304
+N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +IS
Sbjct: 1324 KNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADIS 1383
Query: 305 KAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDE 364
K ++++K+L + + P + + +++P +V ++ +
Sbjct: 1384 K------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQ 1425
Query: 365 FQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAK 410
QK+ K + ++F LN VSLL++ HP L P V++
Sbjct: 1426 MQKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPV 1479
Query: 411 LARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWRE 464
L D + +K+ L+LL+ +VL+FSQ + L L+ + L + E
Sbjct: 1480 LPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----E 1534
Query: 465 GQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWN 524
G + +DG RQ +I+ N P +Q L ST+A GINL A V++ D WN
Sbjct: 1535 GYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWN 1594
Query: 525 PFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQ 584
P + QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1595 PHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGS 1654
Query: 585 TTASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1655 MTKQE-LDDILKFGTEELFKDDVEGMMS 1681
>gi|254824296|ref|ZP_05229297.1| helicase [Listeria monocytogenes FSL J1-194]
gi|255520940|ref|ZP_05388177.1| hypothetical protein LmonocFSL_06916 [Listeria monocytogenes FSL
J1-175]
gi|293593530|gb|EFG01291.1| helicase [Listeria monocytogenes FSL J1-194]
Length = 1072
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 142/501 (28%), Positives = 215/501 (42%), Gaps = 88/501 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 608 LPKGLKAELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 652
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV II P S+L W+ E +K+ IP L+ + S +A
Sbjct: 653 SFLASELEDNPNLKPVLIITPASLLYNWQSELEKFAPAIPVTVLHGTKQS------RMAE 706
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
M+ KRG V LI Y L I+ + F + + DE
Sbjct: 707 MEEMKRGH--VYLISYPSLRQ-----DIVHFADVAFSSV-----------------IIDE 742
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR
Sbjct: 743 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKF---- 798
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+EI A +I + +KEL +KI T L L + ++ +
Sbjct: 799 KEIPYDNIAKMIRPF--LLRRLKQDVVKELPDKIE--------TNLYSELTDEQKTIYLA 848
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQQFFESFDVDSAKLARLK 415
++ Q L +A G + L + PSL F E++ +S KL +L
Sbjct: 849 YLEKIQADL-EASNGNAGEERIKLLAGLTRLRQICCDPSL----FVENYQGESGKLLQL- 902
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
F I +++L+FSQ+ L +I ++L EGQ + YMDGK
Sbjct: 903 ----------FDTIQTARENGKRILLFSQFTGMLGIIRQKLEE-----EGQPLFYMDGKT 947
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
K R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA RA
Sbjct: 948 PSKTRLDMVNAFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRA 1005
Query: 536 YRLGQKRVVHVYHLITSETLE 556
+R+GQKRVV V+ +IT T+E
Sbjct: 1006 HRIGQKRVVQVFRMITKGTIE 1026
>gi|404408086|ref|YP_006690801.1| Snf2 family helicase [Listeria monocytogenes SLCC2376]
gi|404242235|emb|CBY63635.1| helicase, Snf2 family [Listeria monocytogenes SLCC2376]
Length = 1072
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 142/501 (28%), Positives = 215/501 (42%), Gaps = 88/501 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 608 LPKGLKAELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 652
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV II P S+L W+ E +K+ IP L+ + S +A
Sbjct: 653 SFLASELEDNPNLKPVLIITPASLLYNWQSELEKFAPAIPVTVLHGTKQS------RMAE 706
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
M+ KRG V LI Y L I+ + F + + DE
Sbjct: 707 MEEMKRGH--VYLISYPSLRQ-----DIVHFADVAFSSV-----------------IIDE 742
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR
Sbjct: 743 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKF---- 798
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+EI A +I + +KEL +KI T L L + ++ +
Sbjct: 799 KEIPYDNIAKMIRPF--LLRRLKQDVVKELPDKIE--------TNLYSELTDEQKTIYLA 848
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQQFFESFDVDSAKLARLK 415
++ Q L +A G + L + PSL F E++ +S KL +L
Sbjct: 849 YLEKIQADL-EASNGNAGEERIKLLAGLTRLRQICCDPSL----FVENYQGESGKLLQL- 902
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
F I +++L+FSQ+ L +I ++L EGQ + YMDGK
Sbjct: 903 ----------FDTIQTARENGKRILLFSQFTGMLGIIRQKLEE-----EGQPLFYMDGKT 947
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
K R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA RA
Sbjct: 948 PSKTRLDMVNAFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRA 1005
Query: 536 YRLGQKRVVHVYHLITSETLE 556
+R+GQKRVV V+ +IT T+E
Sbjct: 1006 HRIGQKRVVQVFRMITKGTIE 1026
>gi|261201037|ref|XP_002626919.1| dsDNA-dependent ATPase [Ajellomyces dermatitidis SLH14081]
gi|239593991|gb|EEQ76572.1| dsDNA-dependent ATPase [Ajellomyces dermatitidis SLH14081]
Length = 999
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 152/551 (27%), Positives = 228/551 (41%), Gaps = 95/551 (17%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQREG +F+++ + G G G I++ G GKT T+ +
Sbjct: 306 KHLREHQREGVKFLYECVMG----------MRAFNGEGAILADEMGLGKTLQTIALIWTL 355
Query: 128 MKLHP--RCRPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P +PV I+ P +++ W +EF+KW G E G
Sbjct: 356 LKQNPIYEAQPVVKKALIVCPVTLIDNWRKEFRKW--------------LGNERIGVFVA 401
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTG--ILGLSYRLF----EKLVSGDELSGILLDLPG 234
R R L + MG ++ + Y E+L G SGI
Sbjct: 402 DAKRTR------------LTDFTMGKSYSVMIIGYERLRTVQEELSKG---SGI-----D 441
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294
+ + DEGH R +A+ + T RRIILSGTP QN+ E + V L
Sbjct: 442 IVIADEGHRMRTVQNKSAQAIQSLNTSRRIILSGTPIQNDLTEFFAMVDFVNPGL---LG 498
Query: 295 TVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP----FVNVHKGTVLQESL 350
T + +E ++ S A +D EK + E++A F+ +L E L
Sbjct: 499 TFKMFMKEF----EGPIVKSRQPGALKKDIEKGEARSEELANLTSLFILRRTADILSEYL 554
Query: 351 PGLRHSVVILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSVHPSLL-PQQ 399
P V+ P QK + + A+ +S ++L + L PSLL P+
Sbjct: 555 PPKTEYVLFCNPTSSQKNIYRHVLTSPVFQSALGNSESALQLITILKKLCNSPSLLNPRN 614
Query: 400 FFESFDVD-SAKLARL------KLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPL 449
E+ + SA ++ L L P + K R L LL +T+EKV++ S Y
Sbjct: 615 CDETPNSTLSALVSSLPPNILRHLSPSSSGKIRVLDQLLHNIRHTTSEKVVLISNYTS-- 672
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI-MLASTKACCEGI 508
L L +DG KRQ ++ N SS + L S KA G+
Sbjct: 673 ---TLDLLATLLTSLSLPFLRLDGSTPASKRQGLVDDFNRSSSSSVFAFLLSAKAGGTGL 729
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NL+GASR+VL DV WNP + QA++R +R GQKR +Y L+ LE +RQ K+
Sbjct: 730 NLIGASRLVLFDVDWNPATDMQAMARIHRDGQKRHCRIYRLLLKGALEEKIWQRQVTKIG 789
Query: 569 WSNMVFPSSDG 579
++ V G
Sbjct: 790 LADSVMDQKKG 800
>gi|212536498|ref|XP_002148405.1| DNA repair protein Rhp26/Rad26, putative [Talaromyces marneffei
ATCC 18224]
gi|210070804|gb|EEA24894.1| DNA repair protein Rhp26/Rad26, putative [Talaromyces marneffei
ATCC 18224]
Length = 1157
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 145/549 (26%), Positives = 229/549 (41%), Gaps = 86/549 (15%)
Query: 62 VPRDVRKKMFPHQREGFEFIW---KNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
VP D+ +F +Q+ G +++W + GGI DE+ G GKT
Sbjct: 361 VPGDIFPILFDYQKTGVQWLWELYQQQVGGIIGDEM------------------GLGKTI 402
Query: 119 LTLVFLQAYMKLHPRCRPVII-APRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGA 177
+ FL +PVI+ AP +++ W EF +W P + ++ SG +G
Sbjct: 403 QVISFLAGLHHSRKLTKPVIVVAPATVMKQWVTEFHRW---WPPFRVSILHTSG---SGM 456
Query: 178 VALMDNRKRGRGKVGLI-----RYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDL 232
+ + + R + Y + K I+ LV+ SG+
Sbjct: 457 INVRNESNRENALNDEMWDPSRPYTMTKAQKTAKKIVQRVVEEGHVLVT--TYSGLQTYA 514
Query: 233 PGLF-------VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
P L + DEGH RN +T + ++T R+ILSGTP QNN EL + V
Sbjct: 515 PVLIPVDWDCAILDEGHKIRNPNTSITIHCKELRTPHRLILSGTPMQNNLSELWSLFDFV 574
Query: 286 -RQEFGEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPFVNV 340
G ++ + I + +A+ + + RCA + LKE I+P++
Sbjct: 575 FPMRLGTLVDFRNQFEFPIRQGGYANASNLQVQTAARCA--------ETLKEAISPYLLQ 626
Query: 341 HKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN----------YCVSLLS 390
+ LP V+ + Q+ KA E + E N Y V +L
Sbjct: 627 RFKVDVASDLPKKSEQVLFCKLSPLQR---KAYEQFLNSQECNSILAGRRQVLYGVDMLR 683
Query: 391 V---HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQY 445
HP L+ + F + +P K + + LLEL T K L+F+Q+
Sbjct: 684 KICNHPDLVTHKLFSATTGYG--------EPSKSGKMKVVKALLELWRDTGHKTLLFAQH 735
Query: 446 IEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACC 505
+++ L N G MDG+ + +RQ ++ N+ S + L +TK
Sbjct: 736 ----RIMLNILEKFVNTLSGFNYRRMDGETPIHRRQLLVDEFNN-SPDIHVFLLTTKVGG 790
Query: 506 EGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQAR 565
G+NL GA RV++ D WNP + QA RA+RLGQKR V +Y L+T+ T+E RQ
Sbjct: 791 LGVNLTGADRVIIYDPDWNPSTDMQARERAWRLGQKREVAIYRLMTAGTIEEKIYHRQIF 850
Query: 566 KVWWSNMVF 574
K + +N V
Sbjct: 851 KQFLTNKVL 859
>gi|254852266|ref|ZP_05241614.1| helicase [Listeria monocytogenes FSL R2-503]
gi|300766136|ref|ZP_07076102.1| Snf2 family helicase [Listeria monocytogenes FSL N1-017]
gi|404281206|ref|YP_006682104.1| Snf2 family helicase [Listeria monocytogenes SLCC2755]
gi|404287072|ref|YP_006693658.1| Snf2 family helicase [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|258605574|gb|EEW18182.1| helicase [Listeria monocytogenes FSL R2-503]
gi|300513159|gb|EFK40240.1| Snf2 family helicase [Listeria monocytogenes FSL N1-017]
gi|404227841|emb|CBY49246.1| helicase, Snf2 family [Listeria monocytogenes SLCC2755]
gi|404246001|emb|CBY04226.1| helicase, Snf2 family [Listeria monocytogenes serotype 7 str.
SLCC2482]
Length = 1072
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 142/501 (28%), Positives = 215/501 (42%), Gaps = 88/501 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 608 LPKGLKAELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 652
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV II P S+L W+ E +K+ IP L+ + S +A
Sbjct: 653 SFLASELEDNPNLKPVLIITPASLLYNWQSELEKFAPAIPVTVLHGTKQS------RMAE 706
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
M+ KRG V LI Y L I+ + F + + DE
Sbjct: 707 MEEMKRGH--VYLISYPSLRQ-----DIVHFADVAFSSV-----------------IIDE 742
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR
Sbjct: 743 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKF---- 798
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+EI A +I + +KEL +KI T L L + ++ +
Sbjct: 799 KEIPYDNIAKMIRPF--LLRRLKQDVVKELPDKIE--------TNLYSELTDEQKTIYLA 848
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQQFFESFDVDSAKLARLK 415
++ Q L +A G + L + PSL F E++ +S KL +L
Sbjct: 849 YLEKIQADL-EASNGNAGEERIKLLAGLTRLRQICCDPSL----FVENYQGESGKLLQL- 902
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
F I +++L+FSQ+ L +I ++L EGQ + YMDGK
Sbjct: 903 ----------FDTIQTARENGKRILLFSQFTGMLGIIRQKLEE-----EGQPLFYMDGKT 947
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
K R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA RA
Sbjct: 948 PSKTRLDMVNAFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRA 1005
Query: 536 YRLGQKRVVHVYHLITSETLE 556
+R+GQKRVV V+ +IT T+E
Sbjct: 1006 HRIGQKRVVQVFRMITKGTIE 1026
>gi|327351086|gb|EGE79943.1| DsDNA-dependent ATPase [Ajellomyces dermatitidis ATCC 18188]
Length = 1011
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 152/551 (27%), Positives = 229/551 (41%), Gaps = 95/551 (17%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQREG +F+++ + G + G G I++ G GKT T+ +
Sbjct: 327 KHLREHQREGVKFLYECVMGMRAFN----------GEGAILADEMGLGKTLQTIALIWTL 376
Query: 128 MKLHP--RCRPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P +PV I+ P +++ W +EF+KW G E G
Sbjct: 377 LKQNPIYEAQPVVKKALIVCPVTLIDNWRKEFRKW--------------LGNERIGVFVA 422
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTG--ILGLSYRLF----EKLVSGDELSGILLDLPG 234
R R L + MG ++ + Y E+L G SGI
Sbjct: 423 DAKRTR------------LTDFTMGKSYSVMIIGYERLRTVQEELSKG---SGI-----D 462
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294
+ + DEGH R +A+ + T RRIILSGTP QN+ E + V L
Sbjct: 463 IVIADEGHRMRTVQNKSAQAIQSLNTSRRIILSGTPIQNDLTEFFAMVDFVNPGL---LG 519
Query: 295 TVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP----FVNVHKGTVLQESL 350
T + +E ++ S A +D EK + E++A F+ +L E L
Sbjct: 520 TFKMFMKEF----EGPIVKSRQPGALKKDIEKGEARSEELANLTSLFILRRTADILSEYL 575
Query: 351 PGLRHSVVILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSVHPSLL-PQQ 399
P V+ P QK + + A+ +S ++L + L PSLL P+
Sbjct: 576 PPKTEYVLFCNPTSSQKNIYRHVLTSPVFQSALGNSESALQLITILKKLCNSPSLLNPRN 635
Query: 400 FFESFDVD-SAKLARL------KLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPL 449
E+ + SA ++ L L P + K R L LL +T+EKV++ S Y
Sbjct: 636 CDETPNSTLSALVSSLPPNILRHLSPSSSGKIRVLDQLLHNIRHTTSEKVVLISNYTS-- 693
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI-MLASTKACCEGI 508
L L +DG KRQ ++ N SS + L S KA G+
Sbjct: 694 ---TLDLLATLLTSLSLPFLRLDGSTPASKRQGLVDDFNRSSSSSVFAFLLSAKAGGTGL 750
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NL+GASR+VL DV WNP + QA++R +R GQKR +Y L+ LE +RQ K+
Sbjct: 751 NLIGASRLVLFDVDWNPATDMQAMARIHRDGQKRHCRIYRLLLKGALEEKIWQRQVTKIG 810
Query: 569 WSNMVFPSSDG 579
++ V G
Sbjct: 811 LADSVMDQKKG 821
>gi|225682364|gb|EEH20648.1| DNA repair and recombination protein RAD26 [Paracoccidioides
brasiliensis Pb03]
Length = 1236
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 142/566 (25%), Positives = 237/566 (41%), Gaps = 118/566 (20%)
Query: 62 VPRDVRKKMFPHQREGFEFIW---KNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
VP D+ +F +Q+ G +++W + GGI DE+ G GKT
Sbjct: 415 VPGDIYPYLFDYQKTGVQWLWELYQQKVGGIIGDEM------------------GLGKTI 456
Query: 119 LTLVFLQAYMKLHPRCRPVII-APRSMLLTWEEEFKKW---------------------- 155
+ FL +P+I+ P +++ W EF +W
Sbjct: 457 QVIAFLAGLHYSKKLTKPIIVVCPPTVMKQWVNEFHRWWAPFRVSILHTSGSGMINLRSE 516
Query: 156 -----GIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILG 210
++ ++ ++P + KE A ++D R +G V + Y L ++
Sbjct: 517 SYADARLESQIWDPDQPRRATKEQKAAKKILD-RVLAKGHVLVTTYSGLQTY-------- 567
Query: 211 LSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGT 269
S +L+ + G + DEGH RN DT + ++T R+ILSGT
Sbjct: 568 ---------------SSLLIPVDWGCSILDEGHKIRNPDTAITIHCKELRTAHRLILSGT 612
Query: 270 PFQNNFQELENTLSLV-RQEFGEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDD 324
P QNN EL + V G ++ + I + +A+ + + +CA
Sbjct: 613 PMQNNLTELWSLFDFVFPMRLGTLVNFRNQFEFPIRQGGYANASNLQVQTAAKCA----- 667
Query: 325 EKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEG-------VK 377
+ LK+ I+P++ + LP V+ + + Q+ +A G ++
Sbjct: 668 ---ETLKDAISPYLLQRFKIDVAADLPKKSEQVLFCKLTKIQRSAYQAFLGSNEMSSILR 724
Query: 378 SFVELNYCVSLLSV---HPSLLPQQFFES---FDVDSAKLARLKLDPEAGIKTRFLLILL 431
E Y + +L HP L + + ++ SA ++G K + + LL
Sbjct: 725 GRREALYGIDMLRKICNHPDLPEHKTLSTKPGYNYGSAA--------KSG-KMQVVKALL 775
Query: 432 EL--STNEKVLVFSQYIEPLTLIMEQLRHRF-NWREGQEVLYMDGKQDVKKRQSSINVLN 488
EL T K L+F+Q+ IM + RF G + MDG +K RQS ++ N
Sbjct: 776 ELWKETGHKSLLFAQH-----RIMLDILERFIKSMTGFKYQRMDGNTPIKLRQSLVDEFN 830
Query: 489 DPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYH 548
+ + + I L +TK G+NL GA RV++ D WNP + QA RA+RLGQKR V +Y
Sbjct: 831 N-NPEIHIFLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDVQARERAWRLGQKREVTIYR 889
Query: 549 LITSETLEWDKLRRQARKVWWSNMVF 574
L+T+ T+E RQ K + +N +
Sbjct: 890 LMTAGTIEEKIYHRQIFKQFLTNKIL 915
>gi|239607133|gb|EEQ84120.1| dsDNA-dependent ATPase [Ajellomyces dermatitidis ER-3]
Length = 989
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 152/551 (27%), Positives = 228/551 (41%), Gaps = 95/551 (17%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQREG +F+++ + G G G I++ G GKT T+ +
Sbjct: 306 KHLREHQREGVKFLYECVMG----------MRAFNGEGAILADEMGLGKTLQTIALIWTL 355
Query: 128 MKLHP--RCRPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P +PV I+ P +++ W +EF+KW G E G
Sbjct: 356 LKQNPIYEAQPVVKKALIVCPVTLIDNWRKEFRKW--------------LGNERIGVFVA 401
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTG--ILGLSYRLF----EKLVSGDELSGILLDLPG 234
R R L + MG ++ + Y E+L G SGI
Sbjct: 402 DAKRTR------------LTDFTMGKSYSVMIIGYERLRTVQEELSKG---SGI-----D 441
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294
+ + DEGH R +A+ + T RRIILSGTP QN+ E + V L
Sbjct: 442 IVIADEGHRMRTVQNKSAQAIQSLNTSRRIILSGTPIQNDLTEFFAMVDFVNPGL---LG 498
Query: 295 TVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP----FVNVHKGTVLQESL 350
T + +E ++ S A +D EK + E++A F+ +L E L
Sbjct: 499 TFKMFMKEF----EGPIVKSRQPGALKKDIEKGEARSEELANLTSLFILRRTADILSEYL 554
Query: 351 PGLRHSVVILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSVHPSLL-PQQ 399
P V+ P QK + + A+ +S ++L + L PSLL P+
Sbjct: 555 PPKTEYVLFCNPTSSQKNIYRHVLTSPVFQSALGNSESALQLITILKKLCNSPSLLNPRN 614
Query: 400 FFESFDVD-SAKLARL------KLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPL 449
E+ + SA ++ L L P + K R L LL +T+EKV++ S Y
Sbjct: 615 CDETPNSTLSALVSSLPPNILRHLSPSSSGKIRVLDQLLHNIRHTTSEKVVLISNYTS-- 672
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI-MLASTKACCEGI 508
L L +DG KRQ ++ N SS + L S KA G+
Sbjct: 673 ---TLDLLATLLTSLSLPFLRLDGSTPASKRQGLVDDFNRSSSSSVFAFLLSAKAGGTGL 729
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NL+GASR+VL DV WNP + QA++R +R GQKR +Y L+ LE +RQ K+
Sbjct: 730 NLIGASRLVLFDVDWNPATDMQAMARIHRDGQKRHCRIYRLLLKGALEEKIWQRQVTKIG 789
Query: 569 WSNMVFPSSDG 579
++ V G
Sbjct: 790 LADSVMDQKKG 800
>gi|350585547|ref|XP_003481984.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5-like [Sus
scrofa]
Length = 1865
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 693 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 737
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 738 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 796
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 797 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 846
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 847 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 906
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 907 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 948
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 949 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 1002
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 1003 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1057
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1058 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1117
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1118 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1177
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1178 TKQE-LDDILKFGTEELFKDDVEGMMS 1203
>gi|226289757|gb|EEH45241.1| DNA repair and recombination protein RAD26 [Paracoccidioides
brasiliensis Pb18]
Length = 1236
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 142/566 (25%), Positives = 237/566 (41%), Gaps = 118/566 (20%)
Query: 62 VPRDVRKKMFPHQREGFEFIW---KNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
VP D+ +F +Q+ G +++W + GGI DE+ G GKT
Sbjct: 415 VPGDIYPYLFDYQKTGVQWLWELYQQKVGGIIGDEM------------------GLGKTI 456
Query: 119 LTLVFLQAYMKLHPRCRPVII-APRSMLLTWEEEFKKW---------------------- 155
+ FL +P+I+ P +++ W EF +W
Sbjct: 457 QVIAFLAGLHYSKKLTKPIIVVCPPTVMKQWVNEFHRWWAPFRVSILHTSGSGMINLRSE 516
Query: 156 -----GIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILG 210
++ ++ ++P + KE A ++D R +G V + Y L ++
Sbjct: 517 SYADARLESQIWDPDQPRRATKEQKAAKKILD-RVLAKGHVLVTTYSGLQTY-------- 567
Query: 211 LSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGT 269
S +L+ + G + DEGH RN DT + ++T R+ILSGT
Sbjct: 568 ---------------SSLLIPVDWGCSILDEGHKIRNPDTAITIHCKELRTAHRLILSGT 612
Query: 270 PFQNNFQELENTLSLV-RQEFGEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDD 324
P QNN EL + V G ++ + I + +A+ + + +CA
Sbjct: 613 PMQNNLTELWSLFDFVFPMRLGTLVNFRNQFEFPIRQGGYANASNLQVQTAAKCA----- 667
Query: 325 EKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEG-------VK 377
+ LK+ I+P++ + LP V+ + + Q+ +A G ++
Sbjct: 668 ---ETLKDAISPYLLQRFKIDVAADLPKKSEQVLFCKLTKIQRSAYQAFLGSNEMSSILR 724
Query: 378 SFVELNYCVSLLSV---HPSLLPQQFFES---FDVDSAKLARLKLDPEAGIKTRFLLILL 431
E Y + +L HP L + + ++ SA ++G K + + LL
Sbjct: 725 GRREALYGIDMLRKICNHPDLPEHKTLSTKPGYNYGSAA--------KSG-KMQVVKALL 775
Query: 432 EL--STNEKVLVFSQYIEPLTLIMEQLRHRF-NWREGQEVLYMDGKQDVKKRQSSINVLN 488
EL T K L+F+Q+ IM + RF G + MDG +K RQS ++ N
Sbjct: 776 ELWKETGHKSLLFAQH-----RIMLDILERFIKSMTGFKYQRMDGNTPIKLRQSLVDEFN 830
Query: 489 DPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYH 548
+ + + I L +TK G+NL GA RV++ D WNP + QA RA+RLGQKR V +Y
Sbjct: 831 N-NPEIHIFLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDVQARERAWRLGQKREVTIYR 889
Query: 549 LITSETLEWDKLRRQARKVWWSNMVF 574
L+T+ T+E RQ K + +N +
Sbjct: 890 LMTAGTIEEKIYHRQIFKQFLTNKIL 915
>gi|334328751|ref|XP_003341117.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5-like
[Monodelphis domestica]
Length = 1730
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 148/566 (26%), Positives = 253/566 (44%), Gaps = 80/566 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+V+L + Y
Sbjct: 673 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVYLYSLYK 717
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 718 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 776
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 777 SGKKV--FRMKKEAQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 826
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 827 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 886
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 887 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 928
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 929 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 982
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 983 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1037
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1038 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1097
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1098 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1157
Query: 586 TASEPLEDKILEEMAQLYNNPSETLI 611
T E L+D + +L+ + E ++
Sbjct: 1158 TKQE-LDDILKFGTEELFKDDVEGMM 1182
>gi|407919440|gb|EKG12686.1| SNF2-related protein [Macrophomina phaseolina MS6]
Length = 931
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 144/543 (26%), Positives = 225/543 (41%), Gaps = 92/543 (16%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQR+G +F+++ + G G G I++ G GKT T+ +
Sbjct: 276 KHLRDHQRQGVQFLYECVMG----------MGAYNGQGVILADEMGLGKTLQTITLVWTL 325
Query: 128 MKLHPRC-------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P + +I+ P ++ W EF+KW G E G
Sbjct: 326 LKQNPIYDDPPVVKKAIIVCPAGVVSNWRREFRKW--------------LGNERLGVFVA 371
Query: 181 MDNRKR----GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLF 236
++RKR RGK YS I+G +EKL+ E D+ L
Sbjct: 372 DESRKRLTDFTRGKC--------YS----VMIIG-----YEKLLKSHEDIKSQCDV-DLV 413
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGEVLRT 295
V DEGH + +A+ + T R ++LSGTPF NN E LV G++
Sbjct: 414 VLDEGHKLKTAKGKTAQAIRNLGTDRVVLLSGTPFSNNLLEFHAVADLVNPGVLGKLNAF 473
Query: 296 VRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRH 355
R+ I K + S R +E K K+ F+ +L + LP
Sbjct: 474 KREFEGPIVKGQQPDATCSEREKGAARHEELDKLSKQ----FMLRRTADILSKYLPSKTE 529
Query: 356 SVVILQPDEFQKRLCKAVEGVKSF----------VELNYCVSLLSVHPSLLPQQFFESFD 405
V++ +P Q + + V +F ++L + + P LL + ++ +
Sbjct: 530 HVLLCRPTTAQAEVYRRVLASPAFGAALGSNDNALQLINVLKQVCNSPKLL--SYAKNEN 587
Query: 406 VDSAKLARLKLDPEA-----GIKTRF-----LLILLELSTNEKVLVFSQYIEPLTLI--- 452
S +A + + A G +F LL + +TNEKV++ S Y L ++
Sbjct: 588 TPSPTIAAILENIPAKLLNSGASAKFQVLDSLLHRIHTTTNEKVVIVSHYTSTLDILGGL 647
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI-MLASTKACCEGINLV 511
+ L + F L +DG KRQ IN N+ + L S KA GINL
Sbjct: 648 LTSLSYTF--------LRVDGSTPANKRQEMINKFNNSDANKHFAFLLSAKAGGVGINLT 699
Query: 512 GASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSN 571
GASR+VL D+ WNP + QA++R +R GQKR +Y L+T L+ +RQ K ++
Sbjct: 700 GASRLVLYDIDWNPAHDLQAMARIHRDGQKRPCKIYRLLTMGALDEKIYQRQVTKQGLAD 759
Query: 572 MVF 574
V
Sbjct: 760 SVI 762
>gi|312074579|ref|XP_003140033.1| hypothetical protein LOAG_04448 [Loa loa]
Length = 1841
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 131/504 (25%), Positives = 226/504 (44%), Gaps = 86/504 (17%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFY 162
N CI++ G GKT ++ FL Y K +++ P S + +W+ EF+ W
Sbjct: 523 NSCILADEMGLGKTIQSISFLSVLYHKYQLYGTFLVVVPLSTIASWQREFETWA------ 576
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLY---SWKMGTGILGLSYRLF--E 217
P+L+ G + D LIR +LY + ++ ++ +Y + +
Sbjct: 577 ----PDLNVVTYVGDITSRD----------LIRQFELYVQSTKRLKVNVVLTTYEILLKD 622
Query: 218 KLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQE 277
K G +L DE H +ND++ ++++L T R++++GTP QN+ +E
Sbjct: 623 KFFLGSFEWTVL-------TVDEAHRLKNDESLLYRSLFEFTTNHRLLVTGTPLQNSLKE 675
Query: 278 LENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPF 337
L L + E + S E H S D + + L K+ PF
Sbjct: 676 LWALLHFIMPEKFD-------SWPEFEAEHHDS------------DHKTIASLHRKLQPF 716
Query: 338 VNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEG-VKSFVELNY 384
+ +++SLP LR + Q ++ K L K V+G + FV L
Sbjct: 717 LLRRVKKDVEKSLPAKVEQILRVDMTAQQKQYYKWILTKNYKELSKGVKGSINGFVNLVM 776
Query: 385 CVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE------LSTNEK 438
+ H SL+ + + + + A+L +L +K+ LILL+ T +
Sbjct: 777 ELKKCCNHSSLV-RSYDQPEEGADARLQQL-------LKSSGKLILLDKLLCRLQETGHR 828
Query: 439 VLVFSQYIEPLTLIMEQLR-HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
VL+FSQ + L ++ E L+ RF + +DG R+++++ N P+S
Sbjct: 829 VLIFSQMVMMLDIMQEYLQLRRFPSQR------LDGSMRSDLRKAALDHFNAPNSPDFCF 882
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L ST+A GINL A V++ D WNP + QA+SRA+R+GQK+ V++Y L+T ++E
Sbjct: 883 LLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQKKQVNIYRLVTKASVEE 942
Query: 558 DKLRRQARKVWWSNMVFPSSDGGG 581
+ + R RK+ +++ D G
Sbjct: 943 EIVERAKRKLVLDHLIIQRMDTTG 966
>gi|345327482|ref|XP_001506039.2| PREDICTED: hypothetical protein LOC100074424 [Ornithorhynchus
anatinus]
Length = 1623
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 160/589 (27%), Positives = 247/589 (41%), Gaps = 128/589 (21%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ+EG F+++ + G G G I++ G GKT + + ++
Sbjct: 907 PHQKEGILFLFECVMG----------MRVNGRFGAILADEMGLGKTLQCISLIWTLLRQG 956
Query: 132 PRC-RPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRK 185
P +P+I + P S++ W++EF+KW G E ++ K
Sbjct: 957 PYGGKPIIKQTLVVTPGSLVNNWKKEFQKW--------------LGTERIKVFSVDQEHK 1002
Query: 186 RGRGKVGLIRYVK--LYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHT 243
+ ++K YS +L +SY + L S D++ I +L + DEGH
Sbjct: 1003 -------VEEFIKSPFYS------VLIISYEML--LRSLDQIKNIDFNL---LICDEGHR 1044
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE- 302
+N+ AL + RRIIL+GTP QN+ QE + V L T RK E
Sbjct: 1045 LKNNSIKTTTALISLSCDRRIILTGTPVQNDLQEFYALIEFVNPGILGSLSTYRKIYEEP 1104
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQP 362
I +++ S R +++ EL F+ V+ + LP SVV +P
Sbjct: 1105 IIRSREPSAT----REEKELGEKRAAELTRLTGLFILRRTQEVINKYLPPKIESVVFCRP 1160
Query: 363 DEFQ---------------------------------KRLC-------KAVEGVKS---- 378
Q K+LC KA++ +
Sbjct: 1161 AALQIELYRKLLNSRAISFCLQGMLENSPHLVCIGALKKLCNHPCLLFKAIKEKECNSTH 1220
Query: 379 --FVELNYCVSLLSVHP-SLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
F E N L+ V P P F E VDS KL L + L ++ ELS
Sbjct: 1221 DGFEETNLYEGLIDVFPPDYSPVTFPE---VDSGKLRVL---------IKLLAVIRELSP 1268
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
+EKV++ S Y + LT++ E + R G +DG+ + +RQ I+ N S
Sbjct: 1269 SEKVVLVSNYTQTLTILQEICK-----RYGYAHTRLDGQTPISQRQHIIDGFNSKHSPDF 1323
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
+ L S+KA G+NLVG S ++L D+ WNP + QA++R +R GQKR VH+Y L+T+ T+
Sbjct: 1324 VFLLSSKAGGVGLNLVGGSHLILYDIDWNPATDIQAMARVWRDGQKRPVHIYRLLTTGTI 1383
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYN 604
E +RQ K S V D T ASE + + EE+ ++
Sbjct: 1384 EEKIYQRQISKQSLSGTVV--------DLTKASEHIHFSV-EELKNVFT 1423
>gi|390367174|ref|XP_003731194.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3-like
[Strongylocentrotus purpuratus]
Length = 2202
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 129/484 (26%), Positives = 222/484 (45%), Gaps = 64/484 (13%)
Query: 107 IISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLN 165
I++ G GKT T+ FL + Y + H + +I AP S ++ WE EF+ W D FY +
Sbjct: 794 ILADEMGLGKTIQTIAFLYSLYKEGHSKGPFLISAPLSTIINWEREFEFWAPD--FYVVT 851
Query: 166 KPELSGKENNGAV------ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
+G +++ A+ + D+ +G K +R L + +L SY L
Sbjct: 852 ---YTGDKDSRAIIRENEFSFEDDAVKGGKKAYKMRQGSLVKFH----VLLTSYELIS-- 902
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ L + D+ V DE H +N+ + F+ LS R R++L+GTP QNN +EL
Sbjct: 903 IDAGTLQSVNWDV---LVVDEAHRLKNNQSRFFRILSGYNIRFRLLLTGTPLQNNLEELF 959
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVN 339
+ L+ + S E + +H + A+ ++++K+L + + P +
Sbjct: 960 HLLNFM-------------SPDEFNNLQHF-----LAEFADISKEDQIKKLHDMLGPHML 1001
Query: 340 VHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY------CVSLLSV-- 391
+ + +P +V ++ QK+ K + ++F LN VSLL++
Sbjct: 1002 RRLKADVLKGMPSKSEFIVRVELSPLQKKYYKYIL-TRNFQALNTKAAGGGSVSLLNIMM 1060
Query: 392 -------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVF 442
HP L P ++ + + + L G K L +L + N +VL+F
Sbjct: 1061 DLKKCCNHPYLFPTAAADAQRLQNGAFEVVSLIKSCG-KLVLLCKMLRMLKKDNHRVLIF 1119
Query: 443 SQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTK 502
SQ L L+ + L EG + +DG RQ +I+ N P ++ + L ST+
Sbjct: 1120 SQMTRMLDLLEDFLEG-----EGYKYERIDGGVTGGLRQEAIDRFNAPGAEQFVFLLSTR 1174
Query: 503 ACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRR 562
A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T ++E +++ +
Sbjct: 1175 AGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQSNKVMIYRFVTRASVE-ERITQ 1233
Query: 563 QARK 566
A+K
Sbjct: 1234 VAKK 1237
>gi|348571006|ref|XP_003471287.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5-like [Cavia
porcellus]
Length = 2442
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 1091 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 1135
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 1136 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 1194
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 1195 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 1244
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 1245 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 1304
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 1305 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 1346
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 1347 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 1400
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 1401 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1455
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1456 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1515
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1516 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1575
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1576 TKQE-LDDILKFGTEELFKDDVEGMMS 1601
>gi|296813433|ref|XP_002847054.1| DNA repair and recombination protein RAD26 [Arthroderma otae CBS
113480]
gi|238842310|gb|EEQ31972.1| DNA repair and recombination protein RAD26 [Arthroderma otae CBS
113480]
Length = 1233
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 154/561 (27%), Positives = 234/561 (41%), Gaps = 109/561 (19%)
Query: 62 VPRDVRKKMFPHQREGFEFIW---KNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
+P D+ +F +Q+ G +++W + GGI DE+ G GKT
Sbjct: 387 LPGDIYPYLFDYQKTGVKWLWELYQQQVGGIIGDEM------------------GLGKTI 428
Query: 119 LTLVFLQAYMKLHPRCRPVIIA-PRSMLLTWEEEFKKW----------GIDIPFYNLNKP 167
+ FL P+I+ P +++ W EF W I NL K
Sbjct: 429 QVIAFLAGLHYSKKLKGPIIVVCPPTVMKQWVNEFHDWWPPFRVSILHTSGIGMVNL-KS 487
Query: 168 ELSGKENNGAVALMD-NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELS 226
E ++ + A D N RG R +K +L + L S
Sbjct: 488 ESQAEDRYTSGAWGDRNSTSQRGGKAARRILKR--------VLEDGHVLVTTYAGLQTYS 539
Query: 227 GILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
+L+ + G+ V DEGH RN DT + ++T R+ILSGTP QNN EL + V
Sbjct: 540 SLLIPVDWGIAVLDEGHKIRNPDTSITIHCKELRTSHRLILSGTPMQNNLTELWSLFDFV 599
Query: 286 -----------RQEFGEVLRTVRKSGREISKAKHASL-ISSIGRCANHRDDEKLKELKEK 333
R +F +RT A ++L + + +CA + LK+
Sbjct: 600 FPMRLGTLVNFRNQFEFPIRTG-------GYANASNLQVQTAAKCA--------ETLKDA 644
Query: 334 IAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKA--VEGVKSFV-----ELNYCV 386
I+P++ + LP V+ + + Q+ +A G S + E Y +
Sbjct: 645 ISPYLLQRFKMDVAADLPKKSEQVLFCKLTKVQRAAYEAFLASGEMSSILRGRREALYGI 704
Query: 387 SLLSV---HPSLLPQQFFESFDVDSAKLARLKLDPEAGI-----KTRFLLILLEL--STN 436
+L HP D+ K LK D G K + + LLEL T
Sbjct: 705 DMLRKICNHP-----------DLTQHKTLSLKTDYNYGSGAKSGKMQVVKSLLELWRDTG 753
Query: 437 EKVLVFSQYIEPLTLIMEQLR--HRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQ 493
K L+F+Q+ L ++ +R RFN+R MDG +K RQ+ ++ N DPS
Sbjct: 754 HKTLLFAQHRIMLDILERFIRGFDRFNYRR------MDGNTPIKVRQTMVDEFNNDPS-- 805
Query: 494 ARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553
+ L +TK G+NL GA RV++ D WNP + QA RA+RLGQKR V +Y L+T+
Sbjct: 806 LHVFLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDVQARERAWRLGQKREVTIYRLMTAG 865
Query: 554 TLEWDKLRRQARKVWWSNMVF 574
T+E RQ K + +N +
Sbjct: 866 TIEEKIYHRQIFKQFLTNKIL 886
>gi|453083636|gb|EMF11681.1| SNF2_N-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 1356
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 161/611 (26%), Positives = 242/611 (39%), Gaps = 168/611 (27%)
Query: 56 GTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTG 115
G + V + + + HQ EG +F+W+ + + + GG GCI++H G G
Sbjct: 580 GEDYIFVDKKIASALKEHQIEGIQFMWREL----------TAQGSDGGQGCILAHTMGLG 629
Query: 116 KTGLTLVFLQA------------YMKLHPRCRP----------VIIAPRSMLLTWEEEFK 153
KT T+ L A Y ++ RP +II P +++ W E +
Sbjct: 630 KTLQTIATLVALNEATRSENPRVYKQVPEHLRPPDIRERQLRMLIILPAALIQNWRREIR 689
Query: 154 KWGIDIPFYNL--------NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMG 205
W + F N+ +PE + E L W
Sbjct: 690 TWAPHV-FTNIFTVESVPSRRPEQTIDE-------------------------LEGWFNI 723
Query: 206 TGILGLSYRLFEKLVS-------------------GDELSGILLDLPGLFVFDEGHTPRN 246
GIL ++Y LF++ + G +L L+ P + V DE H+ +N
Sbjct: 724 GGILFMTYGLFQRYANWRDPEAEAKRKPAAKLAPFGTKLDKYLIKGPEIVVADEVHSLKN 783
Query: 247 DDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKSGREISK 305
+ +A I T RI L+GTP N+ E+ + +S + GE K
Sbjct: 784 PKAKVTRAAQSIHTESRIGLTGTPMSNDVDEIYSLVSFAAPNYLGE-------------K 830
Query: 306 AKHASLISSIGRCANHRDDE---------KLKELKEKIAPFVNVHKGTVLQESLPGLRHS 356
S+ + N +D E KL L+ +I P V+ VL+ SL
Sbjct: 831 TWFNQTYSNPIKEGNRKDSEPSDVRRMLKKLAVLRNQIEPKVHRADINVLRGSLKPKLEF 890
Query: 357 VVILQPDEFQK---------------RLCKAVEGVKSFVELNYCVSLLSVHP-----SLL 396
V+I+ + Q+ L K V + F L ++LL HP LL
Sbjct: 891 VIIMPLSDIQRVTYKKYLAALSKDESNLNKIVSQTRIFAWL-AALTLLMNHPLAFKRKLL 949
Query: 397 PQQF--------------FESFDVDSA--KLA---RLKLDPEAGIKTRF-------LLIL 430
Q E D+D A LA ++K D AGI +L+L
Sbjct: 950 MHQTKKTLQRESTPSGIDLEDLDMDEAIQSLAFSNKVKQDIVAGIDDNLRAESSMKMLML 1009
Query: 431 LEL-----STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSIN 485
L + ++K+LVFS I L + E LR + + +DG + KRQ IN
Sbjct: 1010 LRIIRHAGKCHDKILVFSGSIPTLDYVEELLR-----KSHIQCGRIDGSVAISKRQPIIN 1064
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
+ S+ ++L STKA G+N+ GA+RVV+LD +NP E QA+ RAYRLGQ + V
Sbjct: 1065 AFH--KSENGVLLMSTKAGV-GLNIQGANRVVILDFGFNPSHEEQAVGRAYRLGQTKPVF 1121
Query: 546 VYHLITSETLE 556
VY LI T E
Sbjct: 1122 VYRLIIGGTFE 1132
>gi|226224245|ref|YP_002758352.1| SNF2-type helicase [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|405755803|ref|YP_006679267.1| Snf2 family helicase [Listeria monocytogenes SLCC2540]
gi|406704421|ref|YP_006754775.1| helicase, Snf2 family [Listeria monocytogenes L312]
gi|225876707|emb|CAS05416.1| Putative SNF2-type helicase [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|404225003|emb|CBY76365.1| helicase, Snf2 family [Listeria monocytogenes SLCC2540]
gi|406361451|emb|CBY67724.1| helicase, Snf2 family [Listeria monocytogenes L312]
Length = 1072
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 141/501 (28%), Positives = 215/501 (42%), Gaps = 88/501 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 608 LPKGLKAELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 652
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV II P S+L W+ E +K+ IP L+ + S +A
Sbjct: 653 SFLASELEDNPNLKPVLIITPASLLYNWQSELEKFAPTIPVTVLHGTKQS------RIAE 706
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
M+ K G V LI Y L I+ + F + + DE
Sbjct: 707 MEEMKHGH--VYLISYPSLRQ-----DIVHFADVAFSSV-----------------IIDE 742
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR
Sbjct: 743 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKF---- 798
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+EI A +I + +KEL +KI T L L + ++ +
Sbjct: 799 KEIPYDNIAKMIRPF--LLRRLKQDVVKELPDKIE--------TNLYSELTDEQKTIYLA 848
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQQFFESFDVDSAKLARLK 415
++ Q L +A G S + L + PSL F E++ +S KL +L
Sbjct: 849 YLEKIQADL-EASNGNASEERIKLLAGLTRLRQICCDPSL----FVENYQGESGKLLQL- 902
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
F I +++L+FSQ+ L +I ++L +GQ + YMDGK
Sbjct: 903 ----------FDTIQTARENGKRILLFSQFTGMLGIIRQKLEE-----DGQTLFYMDGKT 947
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
K R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA RA
Sbjct: 948 PSKTRLDMVNAFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRA 1005
Query: 536 YRLGQKRVVHVYHLITSETLE 556
+R+GQKRVV V+ +IT T+E
Sbjct: 1006 HRIGQKRVVQVFRMITKGTIE 1026
>gi|47093680|ref|ZP_00231434.1| helicase, Snf2 family [Listeria monocytogenes str. 4b H7858]
gi|417316443|ref|ZP_12103091.1| SNF2 family helicase [Listeria monocytogenes J1816]
gi|47017941|gb|EAL08720.1| helicase, Snf2 family [Listeria monocytogenes str. 4b H7858]
gi|328465005|gb|EGF36284.1| SNF2 family helicase [Listeria monocytogenes J1816]
Length = 1072
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 143/511 (27%), Positives = 218/511 (42%), Gaps = 88/511 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 608 LPKGLKAELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 652
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV II P S+L W+ E +K+ IP L+ + S +A
Sbjct: 653 SFLASELEDNPNLKPVLIITPASLLYNWQSELEKFAPTIPVTVLHGTKQS------RIAE 706
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
M+ K G V LI Y L I+ + F + + DE
Sbjct: 707 MEEMKHGH--VYLISYPSLRQ-----DIVHFADVAFSSV-----------------IIDE 742
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR
Sbjct: 743 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKF---- 798
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+EI A +I + +KEL +KI T L L + ++ +
Sbjct: 799 KEIPYDNIAKMIRPF--LLRRLKQDVVKELPDKIE--------TNLYSELTDEQKTIYLA 848
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQQFFESFDVDSAKLARLK 415
++ Q L +A G S + L + PSL F E++ +S KL +L
Sbjct: 849 YLEKIQADL-EASNGNASEERIKLLAGLTRLRQICCDPSL----FVENYQGESGKLLQL- 902
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
F I +++L+FSQ+ L +I ++L +GQ + YMDGK
Sbjct: 903 ----------FDTIQTARENGKRILLFSQFTGMLGIIRQKLEE-----DGQTLFYMDGKT 947
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
K R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA RA
Sbjct: 948 PSKTRLDMVNAFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRA 1005
Query: 536 YRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+R+GQKRVV V+ +IT T+E Q +K
Sbjct: 1006 HRIGQKRVVQVFRMITKGTIEERIFDLQKKK 1036
>gi|395526186|ref|XP_003765249.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5 [Sarcophilus
harrisii]
Length = 2043
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 148/566 (26%), Positives = 253/566 (44%), Gaps = 80/566 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+V+L + Y
Sbjct: 702 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVYLYSLYK 746
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 747 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 805
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 806 SGKKV--FRMKKEAQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 855
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 856 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 915
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 916 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 957
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 958 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 1011
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 1012 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1066
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1067 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1126
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1127 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1186
Query: 586 TASEPLEDKILEEMAQLYNNPSETLI 611
T E L+D + +L+ + E ++
Sbjct: 1187 TKQE-LDDILKFGTEELFKDDVEGMM 1211
>gi|189209013|ref|XP_001940839.1| DNA repair and recombination protein RAD26 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187976932|gb|EDU43558.1| DNA repair and recombination protein RAD26 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 893
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 156/565 (27%), Positives = 240/565 (42%), Gaps = 100/565 (17%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQR+G +F+++ + G G G I++ G GKT T+ L
Sbjct: 248 KHLREHQRDGVQFLYECVMG-----------MRCEGEGAIMADEMGLGKTLQTIALLWTL 296
Query: 128 MKLHP--RCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
MK +P PVI + P ++ W+ EFKKW G E G V +
Sbjct: 297 MKQNPIHGASPVIKKALIVCPAGLVDNWKREFKKW--------------LGNERIG-VYV 341
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTG--ILGLSYRLFEKLVSGDEL---SGILLDLPGL 235
+D + + K+ ++ MG IL + Y + V +EL SG+ +
Sbjct: 342 LDAKNK-----------KIANFTMGKSYNILIVGYEMLR--VYQEELKRGSGV-----DI 383
Query: 236 FVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGEVLR 294
+ DEGH + + A+ + T RRIILSGTP QN+ E + V G+ R
Sbjct: 384 VIADEGHRLKTANNKAMLAIQSLNTERRIILSGTPLQNDLGEFYTAIDFVNPGLLGQ--R 441
Query: 295 TVRKSGREISKAKHASLISSIGRCANHRDDEK----LKELKEKIAPFVNVHKGTVLQESL 350
K E A +I S A+ D EK KEL + F+ VL + L
Sbjct: 442 AAFKRTFE------APIIRSRQPDASESDLEKGEARWKELVSLTSQFMIRRTAEVLSKYL 495
Query: 351 PGLRHSVVILQPDEFQKRLCKAVEGVKSF----------VELNYCVSLLSVHPSLLPQQF 400
P +V +P + Q +AV +F ++L + + PSLL +
Sbjct: 496 PPKTEHIVFCRPTKGQAEAYRAVLDSPTFRLAMGSSDIALQLINVLKKICNSPSLL-KSS 554
Query: 401 FESFDVDSAKLAR-LKLDPE-------AGIKTRFLLILLE---LSTNEKVLVFSQYIEPL 449
++ D S L L L P + K R L L+ +T EK+++ S Y L
Sbjct: 555 KDNDDTPSEMLQSILPLIPNNILNSSASSAKLRLLDSLVHRIYTTTEEKIVIVSNYTTTL 614
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND-PSSQARIMLASTKACCEGI 508
+I E+L ++ L +DG KRQ+ + N P + + L S K+ G+
Sbjct: 615 DMI-ERLLVSLSY----TYLRLDGSTPASKRQALVEKFNKTPKTTSFAFLLSAKSGGVGL 669
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NL+GASR+VL D+ WNP + QA++R +R GQK VY + L+ +RQ K+
Sbjct: 670 NLIGASRIVLFDIDWNPATDLQAMARIHRDGQKLPCKVYRFLVQGGLDEKIYQRQIMKMG 729
Query: 569 WSNMVFPSSDGGGNDQTTASEPLED 593
+N V D + + + E L D
Sbjct: 730 LANAVV---DNKASASSFSQEELRD 751
>gi|302504353|ref|XP_003014135.1| hypothetical protein ARB_07440 [Arthroderma benhamiae CBS 112371]
gi|291177703|gb|EFE33495.1| hypothetical protein ARB_07440 [Arthroderma benhamiae CBS 112371]
Length = 790
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 130/480 (27%), Positives = 201/480 (41%), Gaps = 76/480 (15%)
Query: 135 RPVIIAPRSMLLTWEEEFKKW-GIDI--PFY---NLNKPELSGKENNGAVALMDNRKRGR 188
+ VI P +++ W E KW G D PF +K EL+ + A+A GR
Sbjct: 258 KAVIACPATLVGNWANELVKWLGKDAINPFVIDGKASKTELTSQLRQWAIA------SGR 311
Query: 189 GKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDD 248
V + V + +M + DEL + GL + DEGH +N D
Sbjct: 312 SVVRPVLIVSYETLRMNS----------------DELRDTQI---GLLLCDEGHRLKNAD 352
Query: 249 TCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-------RQEFGEVLRTVRKSGR 301
+ + AL+++ ++R+ILSGTP QN+ E + L R EF + GR
Sbjct: 353 SQTYVALNKLNVQKRVILSGTPIQNDLSEYFSLLDFANPGILGSRSEFHKTYEIPILRGR 412
Query: 302 EISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQ 361
+ + +E+L EL + F+ +L + LP VV
Sbjct: 413 DADGTDE----------QQKKGNERLAELLNLVNKFIIRRSNDLLSKYLPVKYEHVVFCN 462
Query: 362 PDEFQKRLCKAV---EGVKSFVELNYCVSLLSV--------HPSLLP---------QQFF 401
FQ L +KS + L ++ HP LL Q F
Sbjct: 463 LAPFQLDLYNHFIQSPEIKSLLRGKGSQPLKAIGILKKLCNHPDLLKLSEDLPGCEQYFP 522
Query: 402 ESFDVDSAKLARLKLDPEAGIKTRFL---LILLELSTNEKVLVFSQYIEPLTLIMEQLRH 458
E V + + ++ K L L + TN+K+++ S Y + L L R
Sbjct: 523 EDMTVSNGRRGDREVKTWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFERLCRA 582
Query: 459 RFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVL 518
R + +DG VKKR ++ NDP+ + + L S+KA GINLVGA+R+VL
Sbjct: 583 R-----AYGCIRLDGTMGVKKRSKLVDKFNDPNGEEFVFLLSSKAGGCGINLVGANRLVL 637
Query: 519 LDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
D WNP ++QA++R +R GQ + VY I + T+E +RQ+ K S+ V S++
Sbjct: 638 FDPDWNPAADQQALARVWRDGQSKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDSAE 697
>gi|355557485|gb|EHH14265.1| hypothetical protein EGK_00158 [Macaca mulatta]
Length = 2247
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 150/577 (25%), Positives = 255/577 (44%), Gaps = 85/577 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 803 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 847
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 848 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 906
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 907 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 956
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 957 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 1016
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 1017 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 1058
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLP----------QQFF 401
QK+ K + ++F LN VSLL++ HP L P F
Sbjct: 1059 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVVGFPGHHGSF 1117
Query: 402 ESFDVDSAKLARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQ 455
V++ L D + +K+ L+LL+ +VL+FSQ + L L+ +
Sbjct: 1118 SMAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDF 1177
Query: 456 LRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515
L + EG + +DG RQ +I+ N P +Q L ST+A GINL A
Sbjct: 1178 LEY-----EGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADT 1232
Query: 516 VVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFP 575
V++ D WNP + QA SRA+R+GQ + V +Y +T ++E + RK+ +++V
Sbjct: 1233 VIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVR 1292
Query: 576 SSDGGGNDQTTASEPLEDKILEEMAQLYNNPSETLIN 612
G + T E L+D + +L+ + E +++
Sbjct: 1293 PGLGSKSGSMTKQE-LDDILKFGTEELFKDDVEGMMS 1328
>gi|46907873|ref|YP_014262.1| SNF2 family helicase [Listeria monocytogenes serotype 4b str. F2365]
gi|254931583|ref|ZP_05264942.1| helicase [Listeria monocytogenes HPB2262]
gi|405749991|ref|YP_006673457.1| Snf2 family helicase [Listeria monocytogenes ATCC 19117]
gi|405752866|ref|YP_006676331.1| Snf2 family helicase [Listeria monocytogenes SLCC2378]
gi|424823405|ref|ZP_18248418.1| Helicase, Snf2 family [Listeria monocytogenes str. Scott A]
gi|46881142|gb|AAT04439.1| helicase, Snf2 family [Listeria monocytogenes serotype 4b str. F2365]
gi|293583138|gb|EFF95170.1| helicase [Listeria monocytogenes HPB2262]
gi|332312085|gb|EGJ25180.1| Helicase, Snf2 family [Listeria monocytogenes str. Scott A]
gi|404219191|emb|CBY70555.1| helicase, Snf2 family [Listeria monocytogenes ATCC 19117]
gi|404222066|emb|CBY73429.1| helicase, Snf2 family [Listeria monocytogenes SLCC2378]
Length = 1072
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 143/511 (27%), Positives = 218/511 (42%), Gaps = 88/511 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 608 LPKGLKAELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 652
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV II P S+L W+ E +K+ IP L+ + S +A
Sbjct: 653 SFLASELEDNPNLKPVLIITPASLLYNWQSELEKFAPAIPVTVLHGTKQS------RIAE 706
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
M+ K G V LI Y L I+ + F + + DE
Sbjct: 707 MEEMKHGH--VYLISYPSLRQ-----DIVHFADVAFSSV-----------------IIDE 742
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR
Sbjct: 743 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKF---- 798
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+EI A +I + +KEL +KI T L L + ++ +
Sbjct: 799 KEIPYDNIAKMIRPF--LLRRLKQDVVKELPDKIE--------TNLYSELTDEQKTIYLA 848
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQQFFESFDVDSAKLARLK 415
++ Q L +A G S + L + PSL F E++ +S KL +L
Sbjct: 849 YLEKIQADL-EASNGNASEERIKLLAGLTRLRQICCDPSL----FVENYQGESGKLLQL- 902
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
F I +++L+FSQ+ L +I ++L +GQ + YMDGK
Sbjct: 903 ----------FDTIQTARENGKRILLFSQFTGMLGIIRQKLEE-----DGQTLFYMDGKT 947
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
K R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA RA
Sbjct: 948 PSKTRLDMVNAFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRA 1005
Query: 536 YRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+R+GQKRVV V+ +IT T+E Q +K
Sbjct: 1006 HRIGQKRVVQVFRMITKGTIEERIFDLQKKK 1036
>gi|432883650|ref|XP_004074311.1| PREDICTED: chromodomain-helicase-DNA-binding protein 4-like [Oryzias
latipes]
Length = 1974
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 139/520 (26%), Positives = 224/520 (43%), Gaps = 97/520 (18%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 736 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 780
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV-----ALMDN 183
+ H + ++ AP S ++ WE EF+ W D+ + K++ + + DN
Sbjct: 781 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY----IGDKDSRAVIRENEFSFEDN 836
Query: 184 RKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGL-------F 236
RG + R K S K +L SY L I +D+ L
Sbjct: 837 AIRGGKRAS--RMKKDSSIKFH--VLLTSYEL------------ITIDMAALGSIDWACL 880
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTV 296
V DE H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L
Sbjct: 881 VVDEAHRLKNNQSKFFRVLNNYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEVF 940
Query: 297 RKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHS 356
+ +I+K ++++K+L + + P + + + +P
Sbjct: 941 LEEFADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKHMPSKTEL 982
Query: 357 VVILQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFE 402
+V ++ QK+ K + K+F LN VSLL+V HP L P E
Sbjct: 983 IVRVELSPMQKKYYKFI-LTKNFEALNTKGGGNQVSLLNVVMDLKKCCNHPYLFPAAAME 1041
Query: 403 SFDVDSAKLARLKLDPEAGIKTRFLLILLEL------STNEKVLVFSQYIEPLTLIMEQL 456
+ KL D A K+ L+LL+ +VLVFSQ + L L+ + L
Sbjct: 1042 A-----PKLPNGMYDGSALTKSSGKLMLLQKMMRKLKEGGHRVLVFSQMTKMLDLLEDFL 1096
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
+ EG + +DG RQ +I+ N P +Q L ST+A GINL A V
Sbjct: 1097 EN-----EGYKYERIDGGITGGMRQEAIDRFNAPGAQQFAFLLSTRAGGLGINLATADTV 1151
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
++ D WNP + QA SRA+R+GQ + V +Y +T ++E
Sbjct: 1152 IIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTKASVE 1191
>gi|302659152|ref|XP_003021270.1| hypothetical protein TRV_04621 [Trichophyton verrucosum HKI 0517]
gi|291185160|gb|EFE40652.1| hypothetical protein TRV_04621 [Trichophyton verrucosum HKI 0517]
Length = 922
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 143/546 (26%), Positives = 224/546 (41%), Gaps = 83/546 (15%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQREG +F+++ + G + G G I++ G GKT T+ +
Sbjct: 250 KHLREHQREGVKFLYECVMGLRHFN----------GEGAILADEMGLGKTLQTIALIWTL 299
Query: 128 MKLHP--RCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P +PVI P +++ W++EFKKW L + +G L
Sbjct: 300 LKQNPIYGSQPVIKKALIACPVTLINNWKKEFKKW--------LGSDRIGVFVADGKGNL 351
Query: 181 MDNRKRGRG-KVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG--LFV 237
+ + GR V +I Y +L S + ++L G PG L V
Sbjct: 352 LSDFTMGRSYSVMIIGYERLRSVQ-------------DQLTKG----------PGIDLVV 388
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DEGH + +A+ + T RRIILSGTP QN E + V L T +
Sbjct: 389 ADEGHRLKTVQNKSAQAIQSLNTTRRIILSGTPIQNELSEFFAMVDFVNPAL---LGTFK 445
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
R+ + + + + + +EL E +PF+ +L + LP +
Sbjct: 446 SFMRDFEGPIVGARQPNAPKKVIEKGKARSEELAELTSPFILRRTADILSKHLPPKTEYI 505
Query: 358 VILQPDEFQKRLCKAV----------EGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVD 407
+ P Q+ + V +S ++L + + PSLL + ++ +
Sbjct: 506 LFCNPTSAQRSVYHHVLASPMFQSVLRNSESALQLITILKKVCNSPSLLKPKVEDNGKGE 565
Query: 408 SAKLARL--KLDPE------AGIKTRF-----LLILLELSTNEKVLVFSQYIEPLTLIME 454
++ L L P AG + LL L+ T EKV++ S Y
Sbjct: 566 DTSMSALLSSLPPNIHRSLAAGSSGKIRVLDQLLYNLQSKTKEKVVLVSNYTS-----TL 620
Query: 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGINLVGA 513
L L +DG KRQ+ + N PSS L S KA G+NL+GA
Sbjct: 621 NLLANLLTSLDLPFLRLDGSTPATKRQALVEDFNRSPSSSCFAFLLSAKAGGTGLNLIGA 680
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
SR+VL DV WNP + QA++R +R GQKR H+Y L+ +E +RQ K+ ++ V
Sbjct: 681 SRLVLFDVDWNPATDIQAMARIHRDGQKRHCHIYRLLLKGGIEEKIWQRQVTKLGLADSV 740
Query: 574 FPSSDG 579
G
Sbjct: 741 MGQKGG 746
>gi|344302445|gb|EGW32719.1| hypothetical protein SPAPADRAFT_70719 [Spathaspora passalidarum
NRRL Y-27907]
Length = 869
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 138/537 (25%), Positives = 239/537 (44%), Gaps = 69/537 (12%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM 128
K+ PHQ EG +F+++ + G E K GNGC+++ G GKT +T+ + +
Sbjct: 241 KLRPHQIEGVKFMYECLLG---YREYK-------GNGCLLADEMGLGKTLMTITTIWTLL 290
Query: 129 KLHP--------RCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
K +P + +I+ P +++ W+ EF+KW LN+ V +
Sbjct: 291 KQNPFPHENHSLVKKVLIVCPVTLINNWKAEFRKW------LGLNR-----------VNI 333
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG-DELSGILLDLPGLFVFD 239
+ K ++ + KL ++ +L ++Y EK+ + ELS I DL V D
Sbjct: 334 LTLGNTSNEKQEILSFGKLNVYQ----VLIVNY---EKVSAHFQELSTIDFDL---LVCD 383
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTV-RK 298
EGH +N + L ++ R+++L+GTP QN E +S + L+ RK
Sbjct: 384 EGHRLKNSSNKVLNHLIKLNIPRKVVLTGTPIQNYLVEFHTLISFLNPGVLPELKVFQRK 443
Query: 299 SGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
I +A+ + S + +L EL +K F+ +L L ++
Sbjct: 444 FINPILRARDINCFDSEVKRQGEEISNQLIELTKK---FLLRRTQAILDNYLTTKTDVLL 500
Query: 359 ILQPDEFQKRLCKAVE--------GVKSFVELNYCVSLLSVHPSLLPQQFFESFDV---D 407
+ P E Q +L + +F +N + + PSLL + + ++ D
Sbjct: 501 FVPPTELQLKLFDFISKYSNQDCSNAVAFTLINLYKKICN-SPSLLQHDDYFNKNILAQD 559
Query: 408 SAKLARLKLDPEAGIKTRFLLILLEL-STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQ 466
+ L L +G + +LLE+ + NEK+++ S Y + L L+ LR +
Sbjct: 560 RSFLNNTTLSTASGKINVLVPLLLEMVAMNEKIVLISNYTKTLNLLETILR-----KLNL 614
Query: 467 EVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPF 526
L +DG R +N N SSQ ++ L S+K+ GINLVGASR++L D WNP
Sbjct: 615 TFLRLDGSTANNLRNKLVNQFNK-SSQIQVFLLSSKSGGMGINLVGASRLILFDNDWNPS 673
Query: 527 VERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGND 583
+ Q++SR +R GQ + +Y + T+ ++ +RQ K S+ + +D
Sbjct: 674 NDLQSMSRIHRDGQLKPCFIYRIFTTGCIDEKIFQRQLVKNKLSDKFLDDDNSAKSD 730
>gi|154276746|ref|XP_001539218.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150414291|gb|EDN09656.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 959
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 144/550 (26%), Positives = 222/550 (40%), Gaps = 93/550 (16%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQREG +F+++ + G + G G I++ G GKT T+ +
Sbjct: 299 KHLREHQREGVKFLYECVMG----------MRSFNGEGAILADEMGLGKTLQTIALIWTL 348
Query: 128 MKLHP--RCRPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P +PV I+ P +++ W +EF+KW G E G
Sbjct: 349 LKQNPIYEAQPVVKKALIVCPVTLIDNWRKEFRKW--------------LGNERVGVFVA 394
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTG--ILGLSYRLF----EKLVSGDELSGILLDLPG 234
R R L + MG ++ + Y E+L G SGI
Sbjct: 395 DTKRTR------------LTDFTMGKSYSVMIIGYERLRTVQEELSKG---SGI-----D 434
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294
+ + DEGH R +A+ + T +RI+LSGTP QN+ E + V +
Sbjct: 435 IVIADEGHRMRTVQNKSAQAIQSLNTSKRIVLSGTPIQNDLTEFFAMVDFVNPGLLGTFK 494
Query: 295 TVRKS--GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPG 352
K G + + +L I + + + +EL + F+ +L + LP
Sbjct: 495 MFMKEFEGPIVKSRQPGALEKDI-----EKGEARSEELSNLTSLFILRRTADILLKYLPP 549
Query: 353 LRHSVVILQPDEFQKRL-----------CKAVEGVKSFVELNYCVSLLSVHPSLL----- 396
V++ P QK + C A+ +S ++L + L PSLL
Sbjct: 550 KTEYVLLCNPTSSQKNIYHHVLSSPIFQC-ALGNSESALQLITILKKLCNSPSLLKPRNS 608
Query: 397 ---PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPLT 450
P + L P + K R L LL +T+EKV++ S Y L
Sbjct: 609 DQTPNSTLGALISSLPPTVLRYLSPASSGKIRVLDQLLHNIRHTTSEKVVLISNYTSTLD 668
Query: 451 LIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI-MLASTKACCEGIN 509
L+ F L +DG KRQ ++ N SS + L S KA G+N
Sbjct: 669 LLAT-----FLTSLSLPFLRLDGSTPPSKRQGLVDDFNRSSSSSVFAFLLSAKAGGTGLN 723
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
L+GASR++L DV WNP + QA++R +R GQKR VY L+ LE +RQ K+
Sbjct: 724 LIGASRLILFDVDWNPATDIQAMARIHRDGQKRHCRVYRLVLKGALEEKIWQRQVTKIGL 783
Query: 570 SNMVFPSSDG 579
++ V G
Sbjct: 784 ADSVMDQKTG 793
>gi|423100734|ref|ZP_17088441.1| protein, SNF2 family [Listeria innocua ATCC 33091]
gi|370792958|gb|EHN60801.1| protein, SNF2 family [Listeria innocua ATCC 33091]
Length = 1081
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 138/502 (27%), Positives = 218/502 (43%), Gaps = 90/502 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 617 LPKGLKAELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 661
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV I+ P S+L W+ E +K+ +IP L+ + +A
Sbjct: 662 SFLASELEENPNLKPVLIVTPASLLYNWQSELEKFAPEIPVTVLHGTK------QARMAE 715
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
M+ K G V LI Y L I+ + F + + DE
Sbjct: 716 MEEIKHGH--VYLISYPSLRQ-----DIIHFADVAFSSV-----------------IIDE 751
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR ++
Sbjct: 752 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKFKEIP 811
Query: 301 RE-ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI 359
E I+K L+ + + + +KEL +KI T L L + ++ +
Sbjct: 812 YENIAKMIRPFLLRRLKQ-------DVVKELPDKIE--------TNLYSELTDEQKTIYL 856
Query: 360 LQPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQQFFESFDVDSAKLARL 414
++ Q L ++ G S + L + PSL F E++ +S KL +L
Sbjct: 857 AYLEKIQADLEES-NGNASEERIKLLAGLTRLRQICCDPSL----FVENYQGESGKLLQL 911
Query: 415 KLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGK 474
F I +++L+FSQ+ L +I +L +GQ + YMDGK
Sbjct: 912 -----------FDTIQTARENGKRILIFSQFTGMLAIIRRKLEE-----DGQPLFYMDGK 955
Query: 475 QDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISR 534
K R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA R
Sbjct: 956 TPAKTRLDMVNAFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGR 1013
Query: 535 AYRLGQKRVVHVYHLITSETLE 556
A+R+GQKRVV V+ +IT T+E
Sbjct: 1014 AHRIGQKRVVQVFRMITKGTIE 1035
>gi|429856567|gb|ELA31472.1| snf2 family helicase [Colletotrichum gloeosporioides Nara gc5]
Length = 1822
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 140/572 (24%), Positives = 245/572 (42%), Gaps = 118/572 (20%)
Query: 55 QGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGT 114
QG ++ + D+ +++ HQ +G F+W I + + GC+++H G
Sbjct: 821 QGLIY--INEDIGRRIKDHQIQGVRFMWNQIICDPKVRQ-----------GCLLAHTMGL 867
Query: 115 GKTG--LTLVFLQAYMKLHP-------------RCRPVIIAPRSMLLTWEEEFKKW---G 156
GKT +TL+ A P + + +++ P ++ W +E W G
Sbjct: 868 GKTMQVITLLVAIAESAQSPDEPINSQIPNDLRQSKTLVLCPSLLVDNWLDEMLMWAPEG 927
Query: 157 IDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLF 216
+ P++ L E + K+N ++ +IR W G++ + Y +F
Sbjct: 928 LLGPYFKL---ESATKQNE--------------RMPIIRR-----WDDEGGVMIIGYDMF 965
Query: 217 EKLVS--GDELS---------GILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRII 265
++LV G+EL IL P L V DE H +N D+ + A S+ +T+ RI
Sbjct: 966 KRLVDEPGEELPKENDGKTAWNILTQSPNLVVADEAHKLKNPDSKISLAASQFRTQSRIA 1025
Query: 266 LSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK-SGREISKAKHASLISSIGRCANHRDD 324
L+G+P N+ +E + V + R R I + + S R A
Sbjct: 1026 LTGSPLANSVEEYYYMIDWVAPRYLGPPSEFRDLYTRTIQEGLYEDSTRSQFRMAK---- 1081
Query: 325 EKLKELKEKIAPFVNVHKGTV---LQESLPGLRHSVVILQPDEFQKRLCKA-VEGVKSFV 380
++L L++ +AP H+ T+ + LP ++ + + Q RL A ++ +
Sbjct: 1082 KQLAVLEKTVAP--KAHRATIKSLSKNDLPQKTEFILTVPVTDLQARLYDAYLQSARGDA 1139
Query: 381 ELNYCVSLLSV---------HPSLLPQQFFESFDVDSAK--------------------- 410
+ +L + HP + + +D++K
Sbjct: 1140 DQQVSSRILGIVSNLGLIVNHPRCWQNKLAQERRLDTSKNPSNRSANLALSPAVVSSGLK 1199
Query: 411 -LARLKLDPEAGI---KTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWRE 464
+ R K+D ++ + KTR L+ +L S +KVLVF+ I + + LR +
Sbjct: 1200 MMNRPKVDIQSAVLSWKTRLLVAILAESEKVKDKVLVFTSSIPTMDYLENLLRQ-----Q 1254
Query: 465 GQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWN 524
++V +DG + RQ I N S ++ L ST A G+N+ GA+RVVL D +N
Sbjct: 1255 KRKVARLDGSTPINLRQQHIKNFN--SGDTQVYLISTTAGGIGLNIYGANRVVLFDFKYN 1312
Query: 525 PFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
P E+QA+ RAYR+GQ++ V VY L++ T E
Sbjct: 1313 PVNEQQAVGRAYRIGQQKPVFVYKLLSGGTFE 1344
>gi|452822657|gb|EME29674.1| chromatin remodeling complex / DNA-dep ATPase [Galdieria
sulphuraria]
Length = 2042
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 132/499 (26%), Positives = 219/499 (43%), Gaps = 94/499 (18%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP--VIIAPRSMLLTWEEEFKKW-GIDIP 160
G I++ G GKT T+ FLQ Y+ + R R +IIAP S + W+ EF+ W +++
Sbjct: 447 QGSILADEMGLGKTLQTVAFLQ-YLYIRERIRGPFLIIAPLSTVEHWKREFESWTDMNVV 505
Query: 161 FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV 220
Y+ N S + Y W G Y+ F +V
Sbjct: 506 VYHGNSESRS-------------------------IIHQYEWGFSDNPKGPPYK-FVAIV 539
Query: 221 SGDELSGILLDLPG--------LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
+ E I+LD PG + V DE H +N + + L T+ RI+L+GTP Q
Sbjct: 540 TTYE--SIILD-PGKLRSIEWEVMVVDEAHRLKNRQAKLVEELRAFSTKHRILLTGTPIQ 596
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
N+ E+ L+ + +K + S + + A D E ++ +E
Sbjct: 597 NSSAEVWALLNF------------------LEPSKFSDESSFLSKFAEISDSETAEKFRE 638
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV---------EGVKS----- 378
+ P++ + +++S+P +++ ++ QK+ +A +G KS
Sbjct: 639 MLRPYMLRRQKEDVEKSIPPKEETIISVELTRTQKKWYRATLEQNFSFLEKGAKSSNVGN 698
Query: 379 ----FVELNYCVSLLSVHPSLLP------QQFFESFDVDSAKLARLKLDPEAGIKTRFLL 428
F+EL C + HP L+ Q S D +S ++ + + + L
Sbjct: 699 LHNIFMELRKCCN----HPYLIKGVEIIETQHLRSTDDESLMQHLIEASGKLVLVDKLLP 754
Query: 429 ILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN 488
L E + KVL+FSQ I L ++ + L R R G E +DG+ RQ +I+
Sbjct: 755 KLRE--SGHKVLIFSQMIRVLDILEDYLSWR---RWGYE--RIDGRVRGIDRQQAIDRFC 807
Query: 489 DPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYH 548
+P+S + L T+A +GINL A V++ D WNP + QA +R +R+GQ++ V VY
Sbjct: 808 NPASDKFVFLLCTRAGGQGINLTAADTVIIFDSDWNPQNDIQAQARCHRIGQEKDVKVYR 867
Query: 549 LITSETLEWDKLRRQARKV 567
L+T T E D R ++K+
Sbjct: 868 LVTRGTYEEDMFERASKKL 886
>gi|424714518|ref|YP_007015233.1| Uncharacterized ATP-dependent helicase MG018 [Listeria monocytogenes
serotype 4b str. LL195]
gi|424013702|emb|CCO64242.1| Uncharacterized ATP-dependent helicase MG018 [Listeria monocytogenes
serotype 4b str. LL195]
Length = 1081
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 141/501 (28%), Positives = 215/501 (42%), Gaps = 88/501 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 617 LPKGLKAELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 661
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV II P S+L W+ E +K+ IP L+ + S +A
Sbjct: 662 SFLASELEDNPNLKPVLIITPASLLYNWQSELEKFAPAIPVTVLHGTKQS------RIAE 715
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
M+ K G V LI Y L I+ + F + + DE
Sbjct: 716 MEEMKHGH--VYLISYPSLRQ-----DIVHFADVAFSSV-----------------IIDE 751
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR
Sbjct: 752 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKF---- 807
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+EI A +I + +KEL +KI T L L + ++ +
Sbjct: 808 KEIPYDNIAKMIRPF--LLRRLKQDVVKELPDKIE--------TNLYSELTDEQKTIYLA 857
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQQFFESFDVDSAKLARLK 415
++ Q L +A G S + L + PSL F E++ +S KL +L
Sbjct: 858 YLEKIQADL-EASNGNASEERIKLLAGLTRLRQICCDPSL----FVENYQGESGKLLQL- 911
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
F I +++L+FSQ+ L +I ++L +GQ + YMDGK
Sbjct: 912 ----------FDTIQTARENGKRILLFSQFTGMLGIIRQKLEE-----DGQTLFYMDGKT 956
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
K R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA RA
Sbjct: 957 PSKTRLDMVNAFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRA 1014
Query: 536 YRLGQKRVVHVYHLITSETLE 556
+R+GQKRVV V+ +IT T+E
Sbjct: 1015 HRIGQKRVVQVFRMITKGTIE 1035
>gi|417317736|ref|ZP_12104344.1| SNF2 family helicase [Listeria monocytogenes J1-220]
gi|328474032|gb|EGF44843.1| SNF2 family helicase [Listeria monocytogenes J1-220]
Length = 1038
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 139/497 (27%), Positives = 213/497 (42%), Gaps = 80/497 (16%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 608 LPKGLKAELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 652
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV II P S+L W+ E +K+ IP L+ + S +A
Sbjct: 653 SFLASELEDNPNLKPVLIITPASLLYNWQSELEKFAPAIPVTVLHGTKQS------RIAE 706
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
M+ K G V LI Y L I+ + F + + DE
Sbjct: 707 MEEMKHGH--VYLISYPSLRQ-----DIVHFADVAFSSV-----------------IIDE 742
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR
Sbjct: 743 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKF---- 798
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+EI A +I + +KEL +KI T L L + ++ +
Sbjct: 799 KEIPYDNIAKMIRPF--LLRRLKQDVVKELPDKIE--------TNLYSELTDEQKTIYLA 848
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLL-PQQFFESFDVDSAKLARLKLDPE 419
++ Q L +A G S + L + P F E++ +S KL +L
Sbjct: 849 YLEKIQADL-EASNGNASEERIKLLAGLTRLRQICCDPSLFVENYQGESGKLLQL----- 902
Query: 420 AGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKK 479
F I +++L+FSQ+ L +I ++L +GQ + YMDGK K
Sbjct: 903 ------FDTIQTARENGKRILLFSQFTGMLGIIRQKLE-----EDGQTLFYMDGKTPSKT 951
Query: 480 RQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLG 539
R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA RA+R+G
Sbjct: 952 RLDMVNAFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRAHRIG 1009
Query: 540 QKRVVHVYHLITSETLE 556
QKRVV V+ +IT T+E
Sbjct: 1010 QKRVVQVFRMITKGTIE 1026
>gi|384485492|gb|EIE77672.1| hypothetical protein RO3G_02376 [Rhizopus delemar RA 99-880]
Length = 1497
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 132/496 (26%), Positives = 214/496 (43%), Gaps = 71/496 (14%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFY 162
NG I++ G GKT T+ F P +++ P S W EFK+W
Sbjct: 453 NG-ILADEMGLGKTVQTISFFNVLYHKQKLYGPFLVVVPLSTSDNWMNEFKQWA------ 505
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLY---SWKMGTGILGLSYRLFEKL 219
PE++ + + NR IR + Y + K+ IL +Y + L
Sbjct: 506 ----PEMN------VICYLGNRASREA----IRNTEFYVSGTNKIKFNILITTYEIV--L 549
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
D L I DE H +N D+ +++ALS T R++++GTP QN+ +EL
Sbjct: 550 KDKDILGSIRWQY---LAVDEAHRLKNSDSQLYEALSSFSTANRLLITGTPLQNSIKEL- 605
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVN 339
L+LVR F + + S S + +EK+K L E++ +
Sbjct: 606 --LALVR--F-------------LMPSMDLSQYSFDLDVEDANQEEKIKALHEQLKSIML 648
Query: 340 VHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV------------EGVKSFVELNYCVS 387
+++SLP ++ +Q E QK K + E K ++ + +
Sbjct: 649 RRLKKDVEKSLPNKTERILRVQLSEMQKSYYKGILTRNFDFLASSCENKKQWLNIAVELK 708
Query: 388 LLSVHPSLLPQQFFESFDVDSAKLARLK-LDPEAGIKTRFLLILLELSTN-EKVLVFSQY 445
S HP L P + D ++ +LK L +G +L + T+ +VL+FSQ
Sbjct: 709 KASNHPFLFPDAEKHTMD----RMEQLKGLVENSGKMVLLDKLLTRMKTDGHRVLIFSQM 764
Query: 446 IEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACC 505
+ L ++ + + R G +DG ++R +I N P S + L ST+A
Sbjct: 765 VMMLDILSDYMTLR-----GHPFQRLDGSTKPEERNKAIEHFNAPDSPDFVFLLSTRAGG 819
Query: 506 EGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQAR 565
GINLV A V++ D WNP + QA+SRA+R+GQ + V+VY ++ T+E D + R R
Sbjct: 820 MGINLVTADTVIIFDSDWNPQNDLQAMSRAHRIGQTKSVNVYRFVSKGTMEEDIIERAKR 879
Query: 566 KVWWSNMVFPSSDGGG 581
K+ + D G
Sbjct: 880 KMVLEYCIIKQMDTSG 895
>gi|16800753|ref|NP_471021.1| hypothetical protein lin1685 [Listeria innocua Clip11262]
gi|16414172|emb|CAC96916.1| lin1685 [Listeria innocua Clip11262]
Length = 1072
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 140/512 (27%), Positives = 221/512 (43%), Gaps = 90/512 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 608 LPKGLKAELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 652
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV I+ P S+L W+ E +K+ +IP L+ + +A
Sbjct: 653 SFLASELEENPNLKPVLIVTPASLLYNWQSELEKFAPEIPVTVLHGTK------QARMAE 706
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
M+ K G V LI Y L I+ + F + + DE
Sbjct: 707 MEEIKHGH--VYLISYPSLRQ-----DIIHFADVAFSSV-----------------IIDE 742
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR ++
Sbjct: 743 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKFKEIP 802
Query: 301 RE-ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI 359
E I+K L+ + + + +KEL +KI T L L + ++ +
Sbjct: 803 YENIAKMIRPFLLRRLKQ-------DVVKELPDKIE--------TNLYSELTDEQKTIYL 847
Query: 360 LQPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQQFFESFDVDSAKLARL 414
++ Q L ++ G S + L + PSL F E++ +S KL +L
Sbjct: 848 AYLEKIQADLEES-NGNASEERIKLLAGLTRLRQICCDPSL----FVENYQGESGKLLQL 902
Query: 415 KLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGK 474
F I +++L+FSQ+ L +I +L +GQ + YMDGK
Sbjct: 903 -----------FDTIQTARENGKRILIFSQFTGMLAIIRRKLEE-----DGQPLFYMDGK 946
Query: 475 QDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISR 534
K R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA R
Sbjct: 947 TPAKTRLDMVNAFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGR 1004
Query: 535 AYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
A+R+GQKRVV V+ +IT T+E Q +K
Sbjct: 1005 AHRIGQKRVVQVFRMITKGTIEERIFDLQKKK 1036
>gi|225681829|gb|EEH20113.1| DNA repair and recombination protein RAD26 [Paracoccidioides
brasiliensis Pb03]
Length = 1000
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 153/551 (27%), Positives = 232/551 (42%), Gaps = 95/551 (17%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQREG F+++ + G + G G I++ G GKT T+ +
Sbjct: 329 KHLREHQREGVRFLYECVMGMRSFN----------GEGAILADEMGLGKTLQTIALIWTL 378
Query: 128 MKLHP--RCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P PVI + P +++ W++EF+KW G E G
Sbjct: 379 LKQNPIYEAPPVIKKALIVCPVTLIDNWKKEFRKW--------------LGNERIGVFVA 424
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTG----ILGLSYRLFEKLVS-GDELS-GILLDLPG 234
R R L + MG I+G +E+L + +ELS G +D+
Sbjct: 425 DAKRTR------------LTDFTMGQSYSVMIIG-----YERLRTVQEELSKGSGIDI-- 465
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294
+ DEGH R +A+ + T +R+ILSGTP QN+ E + V +L
Sbjct: 466 -VIADEGHRMRTVQNKSAQAIQTLNTSKRVILSGTPIQNDLTEFFAMVDFVNPG---ILG 521
Query: 295 TVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP----FVNVHKGTVLQESL 350
T + K ++ S A RD EK K E++A F+ +L L
Sbjct: 522 TFKM----FMKQFEGPIVKSQQPGALKRDIEKGKARSEELASLTSLFILRRTADLLSNYL 577
Query: 351 PGLRHSVVILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSVHPSLL-PQQ 399
P V+ P Q + + A+ S ++L + L PSLL P+
Sbjct: 578 PPKTEYVLFCNPTSSQANIYRHVLSSPVFQCALGNSDSALQLITILKKLCNSPSLLNPKS 637
Query: 400 FFE-SFDVDSAKLARL------KLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPL 449
E S S+ +A L +L P + K R L LL +T+EKV++ S Y L
Sbjct: 638 SDEDSTSTLSSLVASLPSSITRRLTPASSGKIRVLDQLLHNIRHTTSEKVVLISNYTSTL 697
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPS-SQARIMLASTKACCEGI 508
L+ + L L +DG KRQ+ ++ N S + L S KA G+
Sbjct: 698 DLLGKLLTSL-----SLPFLRLDGSTPAAKRQALVDDFNRSSPTSVFAFLLSAKAGGTGL 752
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NL+GASR+VL DV WNP + QA++R +R GQKR +Y + LE +RQ K+
Sbjct: 753 NLIGASRLVLFDVDWNPATDMQAMARIHRDGQKRHCRIYRFLLKGALEEKIWQRQVTKIG 812
Query: 569 WSNMVFPSSDG 579
++ V G
Sbjct: 813 LADSVMDQKSG 823
>gi|242023690|ref|XP_002432264.1| Chromodomain helicase-DNA-binding protein, putative [Pediculus
humanus corporis]
gi|212517673|gb|EEB19526.1| Chromodomain helicase-DNA-binding protein, putative [Pediculus
humanus corporis]
Length = 1999
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 139/513 (27%), Positives = 230/513 (44%), Gaps = 62/513 (12%)
Query: 99 STGGGNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGI 157
S G G I++ G GKT T+ FL + Y + H + ++ AP S ++ WE EF+ W
Sbjct: 717 SWGQGIDTILADEMGLGKTIQTITFLYSLYKEGHCKGPFLVSAPLSTIINWEREFETWAP 776
Query: 158 DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFE 217
D FY + G +++ AV + G V R K+ + + +L SY
Sbjct: 777 D--FYCVT---YVGDKDSRAVIRENELSFEEGAVRGSRATKIKASSIKFNVLLTSY---- 827
Query: 218 KLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQE 277
+LVS D +D + V DE H +++ + F+ L+ +++L+GTP QNN +E
Sbjct: 828 ELVSIDAACLGSIDW-AVLVVDEAHRLKSNQSKFFRVLAGYNISYKLLLTGTPLQNNLEE 886
Query: 278 LENTLS-LVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP 336
L + L+ + R +F + L + +ISK +E++ +L + + P
Sbjct: 887 LFHLLNFMCRDKFSD-LAAFQNEFADISK------------------EEQVTKLHDLLGP 927
Query: 337 FVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN-----YCVSLLSV 391
+ T + +++P +V ++ QK+ K + ++F LN VSLL++
Sbjct: 928 HMLRRLKTDVLKNMPAKSEFIVRVELSPMQKKYYKWI-LTRNFEALNPKGGGQQVSLLNI 986
Query: 392 ---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE------LSTN 436
HP L F + ++ A + + IK LILL
Sbjct: 987 MMDLKKCCNHPYL-----FSAAAEEAPLSANGTYELQGLIKASGKLILLSKMLKLLREQG 1041
Query: 437 EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI 496
+VL+FSQ + L L+ + L EG + +DG RQ +I+ N P +
Sbjct: 1042 HRVLIFSQMTKMLDLLEDYLEG-----EGYKYERIDGSITGNLRQEAIDRFNAPGAPQFA 1096
Query: 497 MLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T ++E
Sbjct: 1097 FLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQSNKVMIYRFVTRNSVE 1156
Query: 557 WDKLRRQARKVWWSNMVFPSSDGGGNDQTTASE 589
+ RK+ +++V GG N T E
Sbjct: 1157 ERVTQVAKRKMMLTHLVVRPGMGGKNTNFTKQE 1189
>gi|399218088|emb|CCF74975.1| unnamed protein product [Babesia microti strain RI]
Length = 833
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 148/592 (25%), Positives = 256/592 (43%), Gaps = 97/592 (16%)
Query: 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIIS-------HAPGTGKTG 118
+ K + HQREG +F++ ++G D G GCI++ H G GKT
Sbjct: 144 LSKHLRDHQREGVQFVFDCLSGLKKFD----------GQGCILADDMGQLQHNLGLGKTL 193
Query: 119 LTLVFLQAYMKLHPRCRPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKE 173
++ + + +P II P +++ WE E KW L G+
Sbjct: 194 QSITVMWTLLNQGITGKPAARKCAIICPATLVSNWESEIAKW-------------LKGRC 240
Query: 174 NNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP 233
AV+ DN R KV + + + + + ++ SY F V D+L G+ +D+
Sbjct: 241 PCTAVS--DN---SREKV--VSKFQGFKYDYKSRVIISSYETFRLHV--DKLEGVPIDI- 290
Query: 234 GLFVFDEGHTP-------RNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR 286
+ DE H +ND K + I + R++LSGTP QN+ E +S+
Sbjct: 291 --IICDEAHRMYLFYIGLKNDKAQSTKCIINIPAKMRLLLSGTPIQNDLNEFYALVSICN 348
Query: 287 -QEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV------- 338
G++ + I + + + S + A R LKEL + FV
Sbjct: 349 PNALGDINYFRKTYANPIVNGRSSDISSKEYKLAELR----LKELSDITNQFVLRRTNAL 404
Query: 339 -----------NVHKG-TVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCV 386
NV T +Q+++ L + IL K K + +K + L
Sbjct: 405 LSKLLPPKITMNVFCNMTPIQQTMYDLFTTTKILYKKTDSKIPNKGLLAIKGLMALCNHP 464
Query: 387 SLLSVHPSL----LPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLIL-LELSTNEKVLV 441
L+S L L E + + ++ D + + L+ ++ +T++KV++
Sbjct: 465 FLISDPSKLGIDGLNDMIQELKYASNGRSKNIRYDLSGKLYLLYCLLHEIKWNTDDKVVI 524
Query: 442 FSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAST 501
S Y + L+LI ++L N+ +DG KKR + + NDP S + L S+
Sbjct: 525 VSYYTQTLSLI-KRLCRECNY----TYTCLDGSVPPKKRHALVTKFNDPFSDIFVFLLSS 579
Query: 502 KACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561
KA G+NL+GA+R+++ D WNP + QA++R +R GQ++V ++Y L + T+E L+
Sbjct: 580 KAGGAGVNLIGANRLIMFDPDWNPAFDYQALARIWRDGQRKVSYIYRLFCNGTIEEKILQ 639
Query: 562 RQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSETLINA 613
RQ K S+M+ +DG +E +E +E++ ++ + TL N
Sbjct: 640 RQLSKGSLSSMLV--TDG-------QNEIVEGLSMEDLRDIFTLKTNTLSNT 682
>gi|386732381|ref|YP_006205877.1| SNF2-type helicase [Listeria monocytogenes 07PF0776]
gi|384391139|gb|AFH80209.1| SNF2-type helicase [Listeria monocytogenes 07PF0776]
Length = 1072
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 142/501 (28%), Positives = 220/501 (43%), Gaps = 88/501 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE++ K++A + GG I++ G GKT T+
Sbjct: 608 LPKGLKAELRDYQLTGFEWM-KSLA----------KYNIGG----ILADDMGLGKTVQTI 652
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV II P S+L W+ E +K+ IP L+ + S +A
Sbjct: 653 SFLASELEDNPNLKPVLIITPASLLYNWQSELEKFAPTIPVTVLHGTKQS------RIAE 706
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
M+ K G V LI Y L I+ + F + + DE
Sbjct: 707 MEEMKHGH--VYLISYPSLRQ-----DIVHFADVAFSSV-----------------IIDE 742
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR
Sbjct: 743 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKF---- 798
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+EI A +I + +KEL +KI T L L + ++ +
Sbjct: 799 KEIPYDNIAKMIRPF--LLRRLKQDVVKELPDKIE--------TNLYSELTDEQKTIYLA 848
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQQFFESFDVDSAKLARLK 415
++ Q L +A G S + L + PSL F E++ +S KL +L
Sbjct: 849 YLEKIQADL-EASNGNASEERIKLLAGLTRLRQICCDPSL----FVENYQGESGKLLQL- 902
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
F I +++L+FSQ+ L +I ++L +GQ + YMDGK
Sbjct: 903 ----------FDTIQTARENGKRILLFSQFTGMLGIIRQKLEE-----DGQTLFYMDGKT 947
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
K R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA RA
Sbjct: 948 PSKTRLDMVNAFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRA 1005
Query: 536 YRLGQKRVVHVYHLITSETLE 556
+R+GQKRVV V+ +IT T+E
Sbjct: 1006 HRIGQKRVVQVFRMITKGTIE 1026
>gi|380027284|ref|XP_003697358.1| PREDICTED: DNA repair and recombination protein RAD54B-like [Apis
florea]
Length = 717
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 136/529 (25%), Positives = 217/529 (41%), Gaps = 86/529 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQR G F+++ I G G I++ G GKT + + +K
Sbjct: 128 PHQRHGIVFLYECIMG----------LKVPNYFGAILADEMGLGKTLQCITIIWTLLKKG 177
Query: 132 PRCRPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P P+ I+ P S+ W +EFK W + F+ ++ ++ K +K+
Sbjct: 178 PYGYPILKYVLIVTPSSLCNNWNKEFKHW---LGFHRISPYVVNAKNKPNNF-----KKQ 229
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRN 246
R V +I Y L + YR E+ I DL + DEGH +N
Sbjct: 230 IRNSVMIISYEML-----------IKYR--------QEIEQIAFDL---IICDEGHRLKN 267
Query: 247 DDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKA 306
+D K LS + +RRI+L+GTP QN+ QE + V + S E
Sbjct: 268 NDIKTTKILSNLNCKRRILLTGTPVQNDLQEFFALIDFVNP-------VILGSSSEFKNY 320
Query: 307 KHASLISSIGRCANHR------DDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+++S +C N E+ EL EK F+ ++ + LP +H +VI
Sbjct: 321 YEKPIVAS--QCPNASCHVISLGTERANELYEKTKCFILRRTQEIINKYLPS-KHELVIF 377
Query: 361 -----QPDEFQKRLC-----KAVEGVKSFVELNYCVSLLSV--HPSLLPQQFFESFDVDS 408
+ ++ R+ K V + L +L + HP L F+ +
Sbjct: 378 CRLSDEQEDLYSRITNLWFNKNVLPNNNIPHLTLITALKKICNHPEL----FYNDKNDLC 433
Query: 409 AKLARLKLDPEAGIKTRFLLILLEL----STNEKVLVFSQYIEPLTLIMEQLRHRFNWRE 464
+K G + ++ + TNEK+++ S Y + L L+ R E
Sbjct: 434 LNKVSIKNITRKGYYGKISIVQTLIRNLKKTNEKLVLISYYTQTLDLL-----ERVCNME 488
Query: 465 GQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWN 524
+ L +DG R I N + ++ L S KA G+NL GASR++L D WN
Sbjct: 489 CLQFLRLDGNTTSNTRSKIIEQFNSTNDNNKVFLLSAKAGGVGLNLPGASRLILFDSDWN 548
Query: 525 PFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
P + QA++R +R GQK V++ L+T+ T+E +RQ K S V
Sbjct: 549 PASDSQAMARIWRDGQKNDVYILRLLTTGTIEEKIFQRQINKANLSETV 597
>gi|170593189|ref|XP_001901347.1| DNA excision repair protein ERCC-6 [Brugia malayi]
gi|158591414|gb|EDP30027.1| DNA excision repair protein ERCC-6, putative [Brugia malayi]
Length = 1103
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 150/545 (27%), Positives = 243/545 (44%), Gaps = 87/545 (15%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+D +K++ +Q+ G W L+EL N G I++ G GKT +
Sbjct: 223 IPKDCWEKLYKYQKTGVR--W--------LNELHNQCVGG-----ILADEMGLGKTVQVI 267
Query: 122 VFLQ--AYMKLHPR------CRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGK 172
FL+ A+ L R PV II P +++ W +EF+ W P + +SG
Sbjct: 268 SFLRGLAFSCLEDRGFSFSGLGPVLIICPTTLIRQWLKEFRTW---FPLCRVAILHISGS 324
Query: 173 ENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDL 232
+ + L+ K+ + +L SY F K ++ +
Sbjct: 325 FHGQSAQLIR---------------KMVVSQSDGSVLLTSYGTFAK-----NRKHLIDKV 364
Query: 233 PGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR-QEFGE 291
+ DEGH RN D + A+ I+T R+ILSG+P QN+ +EL + + V G
Sbjct: 365 WHYIILDEGHKIRNPDAQITLAVKEIRTPHRLILSGSPLQNSLRELWSLIDFVYPGRLGA 424
Query: 292 VLRTVRKSGREISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPFV--NVHKGTV 345
+ + K I++ +A+ + + +CA L++ I P++ + K
Sbjct: 425 LKSFMDKFSIPITQGGYANATAVQVRTAYKCACI--------LRDAINPYLLRRLKKDVE 476
Query: 346 LQESLPGLRHSVVILQPDEFQKRL---------CKAVEGVK--SFVELNYCVSLLSVHPS 394
+ LP V+ Q++L C + K +FV L + L HP
Sbjct: 477 MSIHLPTKTEQVLFCNITPCQRKLYEEYLSSRECDRILSGKMDAFVGL-ITLRKLCNHPD 535
Query: 395 LL---PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPL 449
L+ P +F +DV + + +G K + L LL+L +KVL+FSQ + L
Sbjct: 536 LVTGGPNKF-NDYDVTADEEMGFGAPCRSG-KMQVLKALLKLWKRQGQKVLLFSQSRQML 593
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509
T++ +F +E E L MDG V+ RQ + N +++ I L +T+ GIN
Sbjct: 594 TIL-----EKFVIQERYEYLRMDGTTVVRSRQLLVEEFN-KNNKIFIFLLTTRVGGLGIN 647
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
L GA+RVV+ D WNP + QA RA+R+GQ+R V +Y L+T T+E RQ KV+
Sbjct: 648 LTGANRVVIFDPDWNPSTDIQARERAWRIGQERAVTIYRLLTGGTIEEKIYHRQIFKVFL 707
Query: 570 SNMVF 574
SN +
Sbjct: 708 SNRIL 712
>gi|260941370|ref|XP_002614851.1| hypothetical protein CLUG_04866 [Clavispora lusitaniae ATCC 42720]
gi|238851274|gb|EEQ40738.1| hypothetical protein CLUG_04866 [Clavispora lusitaniae ATCC 42720]
Length = 885
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 140/534 (26%), Positives = 234/534 (43%), Gaps = 77/534 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQR+G F++ + G + G +++ G GKT +T+ +
Sbjct: 291 KHLKPHQRDGVSFVYSCLLGIHQPNYF----------GALLADEMGLGKTLMTITVIWTL 340
Query: 128 MKLHP-------RCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K P + +I P S++ W EF KW + Y + L+ K+ + A
Sbjct: 341 LKQSPFPGQKKVASKVLICCPVSLIDNWRREFTKW---LGTYRIGVLCLNNKQVSPA--- 394
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
+ K ++ + K ++ +L +SY + L EL + LD+ V DE
Sbjct: 395 -------KDKDDIVNFGKNNVYQ----VLIMSYE--KTLSCSKELDALNLDI---LVCDE 438
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
GH ++ +FK LS + +R++L+GTP QN+ E ++ + +K+
Sbjct: 439 GHRLKSGSNRVFKVLSALSVEKRLLLTGTPIQNDLNEFYTIINFINPGILGTQSEFQKNY 498
Query: 301 -REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQES-------LPG 352
R I +A R N D + ++E K+K A + + K +L+ + L
Sbjct: 499 LRPILRA----------RDVNCHDLKIIREGKDKSAELIQLTKSFILRRTKDIISNCLTR 548
Query: 353 LRHSVVILQPDEFQKRLCKAVEGVKSF-----VELNYCVSLLSV------HPSLLPQQ-F 400
++ P + QK L +AV F E +S++ + PSLL
Sbjct: 549 KTDVIIFCAPTKVQKSLFEAVSKSSKFNSVMRSETKDVLSMILMFRKICNSPSLLHNDPL 608
Query: 401 FESFDVDSAKLARLKLDPEAGIKTRFLL-ILLELST-NEKVLVFSQYIEPLTLIMEQLRH 458
F SF D+ + G K L+ +LLE T EKV++ S Y + L +E +
Sbjct: 609 FASFLHDTELSSSPLSSRTTGSKVNVLVPLLLEFRTVGEKVVLVSNYAQTLDF-LETVLS 667
Query: 459 RFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVL 518
+ N + +DG K R + N + +I L S KA G+NLVGASR++L
Sbjct: 668 KLNL----QYCRLDGSTPAKVRDKLVLDFNKCPTH-KIFLLSAKAGGVGLNLVGASRLIL 722
Query: 519 LDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNM 572
D WNP V+ QA++R +R GQ + V +Y L T+ ++ +RQ K S+M
Sbjct: 723 FDNDWNPSVDLQAMARVHRYGQTKPVFIYRLFTTGAIDEKIFQRQLMKNNLSDM 776
>gi|255936215|ref|XP_002559134.1| Pc13g07020 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583754|emb|CAP91771.1| Pc13g07020 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1116
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 147/545 (26%), Positives = 233/545 (42%), Gaps = 80/545 (14%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
VP D+ + +F +Q+ G +++W EL T G II G GKT +
Sbjct: 324 VPGDISRFLFSYQKTGVQWLW----------ELHQQTV-----GGIIGDEMGLGKTIQAI 368
Query: 122 VFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFY----------NLNKPELS 170
+L A +P +++ P +++ W EF +W PF +N + S
Sbjct: 369 SYLAALHHSKKFTKPAIVVCPATLMKQWVNEFHRWWP--PFRVSILHSSGSGMINIGKES 426
Query: 171 GKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTG-ILGLSYRLFEKLVSGDELSGIL 229
+EN +M + G K+ G +L +Y + L
Sbjct: 427 SRENALTSEMMGSHSSRHLSAGQKAAKKIIKRVTEDGHVLVTTYSGLQSYADA------L 480
Query: 230 LDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-RQ 287
+D+ G + DEGH RN D + + ++T RIILSGTP QN+ +L + V
Sbjct: 481 VDVEWGCAILDEGHKIRNPDAGITFSCKELRTPHRIILSGTPMQNSLVDLWSLFDFVFPM 540
Query: 288 EFGEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
G ++ + I + +AS + + +CA + LK+ I+P++
Sbjct: 541 RLGNLVTFKNQFEIPIRQGGYASASNLQVQTAAKCA--------ETLKDAISPYLLQRFK 592
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVEG---VKSFVELN----YCVSLL---SVHP 393
+ LP V+ + + Q+ + K G +KS + Y + +L S HP
Sbjct: 593 ADVTSDLPLKSEQVIFCKLTQLQRTIYKRFLGSDDMKSIIRGRRNSLYGIDILRKISNHP 652
Query: 394 SLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTL 451
L S + D D E K + L LLE+ T K L+F+Q L +
Sbjct: 653 DL-ADHTLRSREADYG-------DAERSGKMKVLKGLLEVWRDTGHKTLLFTQGRLMLDI 704
Query: 452 IMEQLR--HRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGI 508
I + L FN R MDG +K+RQS +N N DP+ + L +T+ G+
Sbjct: 705 IEKFLGVLGGFNCRR------MDGTTPIKERQSLVNDFNNDPN--IHVFLLTTRVGGIGV 756
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NL GA RV++ D WNP + QA RA+RLGQKR V ++ L+T T+E RQ K +
Sbjct: 757 NLTGADRVIIYDPDWNPSTDLQARERAWRLGQKRDVTIFRLMTKGTIEEKIYHRQIFKQF 816
Query: 569 WSNMV 573
+N +
Sbjct: 817 LTNKI 821
>gi|422416145|ref|ZP_16493102.1| SNF2 family helicase, partial [Listeria innocua FSL J1-023]
gi|313623518|gb|EFR93710.1| SNF2 family helicase [Listeria innocua FSL J1-023]
Length = 650
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 135/498 (27%), Positives = 216/498 (43%), Gaps = 82/498 (16%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 186 LPKGLKAELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 230
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV I+ P S+L W+ E +K+ +IP L+ + +A
Sbjct: 231 SFLASELEENPNLKPVLIVTPASLLYNWQSELEKFAPEIPVTVLHGTK------QARMAE 284
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
++ K G V LI Y L I+ + F ++ DE
Sbjct: 285 VEEIKHGH--VYLISYPSLRQ-----DIIHFADVAFSSVI-----------------IDE 320
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR ++
Sbjct: 321 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKFKEIP 380
Query: 301 RE-ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI 359
E I+K L+ + + + +KEL +KI T L L + ++ +
Sbjct: 381 YENIAKMIRPFLLRRLKQ-------DVVKELPDKIE--------TNLYSELTDEQKTIYL 425
Query: 360 LQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLL-PQQFFESFDVDSAKLARLKLDP 418
++ Q L ++ G S + L + P F E++ +S KL +L
Sbjct: 426 AYLEKIQADLEES-NGNASEERIKLLAGLTRLRQICCDPSLFVENYQGESGKLLQL---- 480
Query: 419 EAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVK 478
F I +++L+FSQ+ L +I +L +GQ + YMDGK K
Sbjct: 481 -------FDTIQTARENGKRILIFSQFTGMLAIIRRKLEE-----DGQSLFYMDGKTPAK 528
Query: 479 KRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRL 538
R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA RA+R+
Sbjct: 529 TRLDMVNAFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRAHRI 586
Query: 539 GQKRVVHVYHLITSETLE 556
GQKRVV V+ +IT T+E
Sbjct: 587 GQKRVVQVFRMITKGTIE 604
>gi|268557732|ref|XP_002636856.1| C. briggsae CBR-LET-418 protein [Caenorhabditis briggsae]
Length = 1849
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 139/520 (26%), Positives = 230/520 (44%), Gaps = 74/520 (14%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT +L FL MK H + +I AP S ++ WE E ++W D F
Sbjct: 617 GTDAILADEMGLGKTVQSLTFLYTLMKEGHCKGPFLIAAPLSTIINWEREAEQWCPD--F 674
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL 215
Y + G ++ V + +D R K G ++ + +L SY
Sbjct: 675 YVVT---YVGDRDSRVVLREHEFSFVDGAVRTGPKAGRMKTTD----NLKFHVLLTSYET 727
Query: 216 --FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQN 273
+K + LS I G V DE H +N+ + FK L+ R++L+GTP QN
Sbjct: 728 INMDKTI----LSSIEW---GALVVDEAHRLKNNQSLFFKNLNEYTIHYRVLLTGTPLQN 780
Query: 274 NFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEK 333
N +EL + L+ + +E L EISK ++++++L
Sbjct: 781 NLEELFHLLNFLSKERFNQLEAFTAEFSEISK------------------EDQIEKLHNL 822
Query: 334 IAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVSL 388
+ P + + +P +V ++ + QK+ K + ++F LN +SL
Sbjct: 823 LGPHMLRRLKADVLTGMPSKSELIVRVELSQMQKKWYKNI-LTRNFDALNVKNGGTQMSL 881
Query: 389 LSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE------L 433
++V HP L F +++ K + A IK +LL+
Sbjct: 882 MNVLMELKKCCNHPYL-----FVKASLEAPKEKNGMYEGTALIKNSGKFVLLQKMLRKLK 936
Query: 434 STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQ 493
T +VL+FSQ +T++M+ L F EG + +DG + RQ +I+ N P +Q
Sbjct: 937 DTGHRVLIFSQ----MTMMMDILED-FCDVEGYKYERIDGSITGQMRQDAIDRYNAPGAQ 991
Query: 494 ARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553
+ L ST+A GINL A V++ D WNP + QA SRA+RLGQK V +Y +T
Sbjct: 992 QFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKN 1051
Query: 554 TLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLED 593
++E +K+ +++V + GG ++ + L+D
Sbjct: 1052 SVEERITTVAKKKMLLNHLVVRAGLGGKEGKSMSKTELDD 1091
>gi|164688165|ref|ZP_02212193.1| hypothetical protein CLOBAR_01810 [Clostridium bartlettii DSM
16795]
gi|164602578|gb|EDQ96043.1| SNF2 family N-terminal domain protein [Clostridium bartlettii DSM
16795]
Length = 700
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 129/507 (25%), Positives = 220/507 (43%), Gaps = 104/507 (20%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+++ + +Q EGFEF+ T G G I++ G GKT T+
Sbjct: 242 LPQNLNASLREYQVEGFEFL---------------KTLANYGFGGILADEMGLGKTIQTI 286
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
FL + + ++I P +++ W+ EF+++ D+ V L+
Sbjct: 287 AFLLS----ESNKKSIVITPTALIYNWKSEFERFAPDLK-----------------VGLI 325
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
K R K L++ K Y ++ +Y ++ D + D + DE
Sbjct: 326 YGSKEKREK--LLKIYKDYD------VILTTYGTYKN--DMDNYKNLKFDY---LIIDEA 372
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301
+N D+ KA+ +I + + L+GTP +NN EL + V G
Sbjct: 373 QNIKNPDSATTKAIKKINAKSKFGLTGTPMENNLVELWSIFDFVM------------PGY 420
Query: 302 EISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQ 361
SK + + + +D+ L+ LK+ I PF+ + + + LP ++
Sbjct: 421 LYSKHRFEKIFVN--------NDKNLELLKQMIKPFILRRRKKDVIDELPDKIEQKFYVE 472
Query: 362 PDEFQKRLCKAVEGV--KSFVELN--------YCVSL--LSVHPSLLPQQFFESFDVDSA 409
D+ K++ + K +E N Y L LS+ P L+ + +
Sbjct: 473 LDKEHKKVYNTFLSILKKQIIENNSDNVTLFSYLTKLRMLSISPELVVKNY-------KG 525
Query: 410 KLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVL 469
K ++L++ L+ +++ S + K+LVFSQ+ + L LI ++ +E E
Sbjct: 526 KNSKLEM----------LIKIIKSSKDRKILVFSQFTQVLGLIAKRFE-----KENIEFN 570
Query: 470 YMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVER 529
Y+DGK D KKR + N S+ ++ L S KA G+NL AS VV D +NP VE
Sbjct: 571 YLDGKIDAKKRLELVEDFNQNKSK-KVFLISLKAGGTGLNLTSASMVVHFDPWFNPAVED 629
Query: 530 QAISRAYRLGQKRVVHVYHLITSETLE 556
QA RA+R+GQK +V V LI+ +T+E
Sbjct: 630 QASDRAHRIGQKNIVDVIKLISKDTVE 656
>gi|17562600|ref|NP_504523.1| Protein LET-418 [Caenorhabditis elegans]
gi|403399446|sp|G5EBZ4.1|LE418_CAEEL RecName: Full=Protein let-418; AltName: Full=Lethal protein 418
gi|11095333|gb|AAG29838.1| LET-418 [Caenorhabditis elegans]
gi|351020697|emb|CCD62685.1| Protein LET-418 [Caenorhabditis elegans]
Length = 1829
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 146/554 (26%), Positives = 238/554 (42%), Gaps = 89/554 (16%)
Query: 69 KMFPHQREGFEFI---WKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQ 125
K+ P+Q EG ++ W N I DE+ G GKT +L FL
Sbjct: 601 KLHPYQLEGLNWLRHCWSNGTDAILADEM------------------GLGKTVQSLTFLY 642
Query: 126 AYMKL-HPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALM 181
+ MK H + +I AP S ++ WE E ++W D + + L + +E+ + +
Sbjct: 643 SLMKEGHCKGPFLIAAPLSTIINWEREAEQWCPDFYVVTYVGLRDARVVLREHE--FSFV 700
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL--FEKLVSGDELSGILLDLPGLFVFD 239
+ R K ++ + M +L SY +K + LS I G V D
Sbjct: 701 EGAVRSGPKASKMKTTE----NMKFHVLLTSYETINMDKTI----LSSIEW---GALVVD 749
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS 299
E H +N+ + FK L+ R++L+GTP QNN +EL + L+ + +E L
Sbjct: 750 EAHRLKNNQSLFFKNLNEYTIHYRVLLTGTPLQNNLEELFHLLNFLSKERFNQLEAFTAE 809
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI 359
EISK ++++++L + P + + +P +V
Sbjct: 810 FNEISK------------------EDQIEKLHNLLGPHMLRRLKADVLTGMPSKSELIVR 851
Query: 360 LQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFD 405
++ QK+ K + ++F LN +SL++V HP L F +
Sbjct: 852 VELSAMQKKWYKNI-LTRNFDALNVKNGGTQMSLMNVLMELKKCCNHPYL-----FVKAE 905
Query: 406 VDSAKLARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHR 459
+++ K + A IK +LL+ +VL+FSQ L IME L
Sbjct: 906 LEAPKEKNGMYEGTALIKNSGKFVLLQKMLRKLKDGGHRVLIFSQMTRMLD-IMEDLCE- 963
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
EG +DG + RQ +I+ N P +Q I L ST+A GINL A V++
Sbjct: 964 ---YEGYRYERIDGSIMGQMRQDAIDRYNAPGAQQFIFLLSTRAGGLGINLATADTVIIY 1020
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDG 579
D WNP + QA SRA+RLGQK V +Y +T +++E +K+ +++V + G
Sbjct: 1021 DSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKKSVEEKITSVAKKKMLLNHLVVRAGLG 1080
Query: 580 GGNDQTTASEPLED 593
G +T + L+D
Sbjct: 1081 GKEGKTMSKTELDD 1094
>gi|294947224|ref|XP_002785281.1| chromodomain helicase dna binding protein, putative [Perkinsus
marinus ATCC 50983]
gi|239899054|gb|EER17077.1| chromodomain helicase dna binding protein, putative [Perkinsus
marinus ATCC 50983]
Length = 945
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 143/545 (26%), Positives = 242/545 (44%), Gaps = 89/545 (16%)
Query: 61 LVPRDVRKKMFPHQREGFEFI---WKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT 117
+V R R +F Q EG +++ W G I DE+ G GKT
Sbjct: 26 MVYRPTRDTLFGFQVEGIQWLLHNWSQYRGSILADEM------------------GMGKT 67
Query: 118 GLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGK-ENN 175
T VFL A M P +I+AP S L W+ E +KW + LN ++G E+
Sbjct: 68 VQTAVFLSAVMATVGGTGPCLIVAPLSTLRHWQRELRKWAPE-----LNVVVMAGSSEDR 122
Query: 176 GAVALMD----NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLD 231
+A D N G + +++ + ++ SY +F + ++ +
Sbjct: 123 DIIADFDMSWININNGHREKEPLKHRADPQFCPKFDVVVTSYEIFLTCSNRSNITSLTNY 182
Query: 232 LPGLFVFDEGHTPRNDDTCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQE-- 288
+ V DEGH +N + KAL+ I + +IL+GTP QNN +EL + L LV ++
Sbjct: 183 NWRVLVLDEGHRVKNHLSHSTKALAHIANVQHTVILTGTPIQNNLRELWSILHLVDKKRF 242
Query: 289 ------FGEVLRTVRKSGREISKAKHASLISSIGRCA--NHRDDEKLKELKEKIAPFV-N 339
E+ + G+ S + SS G+ + + + L ++ E + P++
Sbjct: 243 ATFEGVVAELQKDTPDEGQSGSATSNHGDGSSEGKKSEIDSVANLDLDKVTEVLRPYMLR 302
Query: 340 VHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV-----------EGVKS-----FVELN 383
+K +++ P L H ++ ++ Q+R+ K+V +G KS +EL
Sbjct: 303 RYKSDAMKKVPPKLEH-IIEVEFTTLQRRVYKSVYEGKIYSLVNGKGGKSSLNNIAMELR 361
Query: 384 YCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFL------LILLE----- 432
C + HP L+ V+ + L L + P++ + + L L+ LE
Sbjct: 362 KCCA----HPYLIS-------GVEDSHLEALGVKPDSAVAMQNLTEMSGKLVFLEKLIPQ 410
Query: 433 -LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPS 491
EK+L+FSQ+ ++++ + W++ V +DG KRQ++I+ ND
Sbjct: 411 LREKKEKLLIFSQF----KIVLDIIEDWLTWKK-LPVERLDGSVSGGKRQAAIDRFNDKK 465
Query: 492 SQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLIT 551
+ L +T+A GINL AS VV+ D WNP + QA +R +R+GQ + V VY L+T
Sbjct: 466 HDSFAFLLTTRAGGVGINLTSASVVVIYDSDWNPQNDNQAQARCHRIGQTKTVRVYRLLT 525
Query: 552 SETLE 556
+ E
Sbjct: 526 RNSYE 530
>gi|410925745|ref|XP_003976340.1| PREDICTED: chromodomain-helicase-DNA-binding protein 4-like [Takifugu
rubripes]
Length = 1955
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 139/529 (26%), Positives = 234/529 (44%), Gaps = 96/529 (18%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 767 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 811
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV------ALMD 182
+ H + ++ AP S ++ WE EF+ W D+ G +++ AV + D
Sbjct: 812 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY-----VGDKDSRAVIRENEFSFED 866
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFV 237
N RG K + K T I F L++ EL I + + G V
Sbjct: 867 NAIRGGKKASRM--------KKDTSIK------FHVLLTSYELITIDMAVLGSIDWACLV 912
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DE H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L
Sbjct: 913 VDEAHRLKNNQSKFFRVLNNYPLQHKLLLTGTPLQNNLEELFHLLNFLTPERFSKLEIFL 972
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
+ +I+K ++++K+L + + P + + + +P +
Sbjct: 973 EEFADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKHMPSKTELI 1014
Query: 358 VILQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFES 403
V ++ QK+ K + K+F LN VSLL+V HP L P +
Sbjct: 1015 VRVELSSMQKKYYKFI-LTKNFEALNTKGGGNQVSLLNVVMDLKKCCNHPYLFP-----A 1068
Query: 404 FDVDSAKLARLKLDPEAGIKTRFLLILLEL------STNEKVLVFSQYIEPLTLIMEQLR 457
+++ K+ D A K+ L+LL+ +VL+FSQ + L L+ + L
Sbjct: 1069 AAIEAPKMPNGMYDGSALTKSSGKLLLLQKMMRKLKEGGHRVLIFSQMTKMLDLLEDFLE 1128
Query: 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
+ EG + +DG RQ +I+ N P +Q L ST+A GINL A V+
Sbjct: 1129 N-----EGYKYERIDGGITGGMRQEAIDRFNAPGAQQFAFLLSTRAGGLGINLATADTVI 1183
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+ D WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1184 IYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTKASVE-ERITQVAKK 1231
>gi|195354154|ref|XP_002043565.1| GM19418 [Drosophila sechellia]
gi|194127733|gb|EDW49776.1| GM19418 [Drosophila sechellia]
Length = 882
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 144/522 (27%), Positives = 230/522 (44%), Gaps = 76/522 (14%)
Query: 99 STGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR-PVIIA-PRSMLLTWEEEFKKWG 156
S G G I++ G GKT T+VFL + K CR P +I+ P S L WE E + W
Sbjct: 282 SWGQGIPTILADEMGLGKTIQTVVFLYSLFK-EGHCRGPFLISVPLSTLPNWERELELWA 340
Query: 157 IDIPFYN----------LNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGT 206
++ + K ELS +E + +N+ + + V L Y
Sbjct: 341 PELYCVTYVGGKTARAVIRKHELSFEEVTTKT-MRENQTQYKFNVMLASY---------- 389
Query: 207 GILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIIL 266
+ +S D + +D L V DE H R++ + F+ LSR + +++L
Sbjct: 390 -----------EFISLDAVFLGSIDWAALVV-DEAHRLRSNQSKFFRILSRYRIAYKLLL 437
Query: 267 SGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEK 326
+GTP QNN +EL + L+ + L+T + ++SK +E+
Sbjct: 438 TGTPLQNNLEELFHLLNFLSSGKFNDLQTFQAEFTDVSK------------------EEQ 479
Query: 327 LKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-- 384
+K L E + P + + +S+P +V ++ QK+ K + K+F LN
Sbjct: 480 VKRLHEILEPHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKFYKHIL-TKNFKALNQKG 538
Query: 385 ---CVSLLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE 432
SLL++ HP L P E+ S L +G +L
Sbjct: 539 GGRVCSLLNIMMDLRKCCNHPYLFPSAAEEAPISPSGIYEMNSLTKASGKLVLLSKMLKL 598
Query: 433 LST-NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPS 491
L N +VL+FSQ ++ ++ L H F EG + +DG RQ +I+ NDP
Sbjct: 599 LKKDNHRVLLFSQ----MSKMLNILEH-FLEGEGYQYDRIDGAIRGDLRQKAIDRFNDPG 653
Query: 492 SQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLIT 551
S+ + L ST+A GINL A V++ D WNP + QA SRA+R+GQK+ V +Y +T
Sbjct: 654 SEQFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVT 713
Query: 552 SETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLED 593
++E ++ RK+ +++V GG + E LED
Sbjct: 714 HNSVEERIMQVAKRKMMLTHLVVRPGMGGTATNFSKDE-LED 754
>gi|225560239|gb|EEH08521.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 974
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 144/550 (26%), Positives = 222/550 (40%), Gaps = 93/550 (16%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQREG +F+++ + G + G G I++ G GKT T+ +
Sbjct: 314 KHLREHQREGVKFLYECVMG----------MRSFNGEGAILADEMGLGKTLQTIALIWTL 363
Query: 128 MKLHP--RCRPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P +PV I+ P +++ W++EF+KW G E G
Sbjct: 364 LKQNPIYEAQPVVKKALIVCPVTLIDNWKKEFRKW--------------LGNERVGVFVA 409
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTG--ILGLSYRLF----EKLVSGDELSGILLDLPG 234
R R L + MG ++ + Y E+L G SGI
Sbjct: 410 DAKRTR------------LTDFTMGKSYSVMIIGYERLRTVQEELSKG---SGI-----D 449
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294
+ + DEGH R +A+ + T +RI+LSGTP QN+ E + V +
Sbjct: 450 IVIADEGHRMRTVQNKSAQAIQSLNTSKRIVLSGTPIQNDLTEFFAMVDFVNPGLLGTFK 509
Query: 295 TVRKS--GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPG 352
K G + + +L I + + + +EL + F+ +L + LP
Sbjct: 510 MFMKEFEGPIVKSRQPGALEKDI-----EKGEARSEELTNLTSLFILRRTADILLKYLPP 564
Query: 353 LRHSVVILQPDEFQKRL-----------CKAVEGVKSFVELNYCVSLLSVHPSLL----- 396
V+ P QK + C A+ +S ++L + L PSLL
Sbjct: 565 KTEYVLFCNPTSSQKNIYHYVLSSPIFQC-ALGNSESALQLITILKKLCNSPSLLKPRNS 623
Query: 397 ---PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPLT 450
P + L P + K R L LL +T+EKV++ S Y L
Sbjct: 624 DQTPNSTLGALISSLPPTVLRHLSPASSGKIRVLDQLLHNIRHTTSEKVVLISNYTSTLD 683
Query: 451 LIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI-MLASTKACCEGIN 509
L+ F L +DG KRQ ++ N SS + L S KA G+N
Sbjct: 684 LLAT-----FLTSLSLPFLRLDGSTPPSKRQGLVDDFNRSSSSSVFAFLLSAKAGGTGLN 738
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
L+GASR++L DV WNP + QA++R +R GQKR VY L+ LE +RQ K+
Sbjct: 739 LIGASRLILFDVDWNPATDIQAMARIHRDGQKRHCRVYRLVLKGALEEKIWQRQVTKIGL 798
Query: 570 SNMVFPSSDG 579
++ V G
Sbjct: 799 ADSVMDQKTG 808
>gi|315303447|ref|ZP_07874044.1| DNA/RNA helicase protein [Listeria ivanovii FSL F6-596]
gi|313628192|gb|EFR96728.1| DNA/RNA helicase protein [Listeria ivanovii FSL F6-596]
Length = 1072
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 140/502 (27%), Positives = 219/502 (43%), Gaps = 90/502 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 608 LPKGLKAELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 652
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV I+ P S+L W+ E K+ IP L+ KE+ A
Sbjct: 653 SFLASELENNPNLKPVLIVTPASLLYNWQSELGKFAPMIPVTVLH----GTKESRMA--- 705
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
+ ++ RG V LI Y L IL L+ F ++ DE
Sbjct: 706 -EMKEMKRGHVYLISYPSLRQ-----DILNLADVAFSSVI-----------------IDE 742
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR ++
Sbjct: 743 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIYQTLMPGFFPSLRKFKEIP 802
Query: 301 RE-ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI 359
E I+K L+ + + + +KEL +KI T L L + ++ +
Sbjct: 803 YENIAKMIRPFLLRRLKQ-------DVVKELPDKIE--------TNLYSELTDEQKTIYL 847
Query: 360 LQPDEFQKRLCKAV-----EGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARL 414
++ Q L ++ E +K L + + PSL F E++ +S KL +L
Sbjct: 848 AYLEKIQADLEESSGNASEERIKLLAGLTR-LRQICCDPSL----FVENYQGESGKLLQL 902
Query: 415 KLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGK 474
F I +++L+FSQ+ L +I +L +GQ YMDGK
Sbjct: 903 -----------FDTIQTARENGKRILIFSQFTGMLAIIRRKLEE-----DGQTFFYMDGK 946
Query: 475 QDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISR 534
+ R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA R
Sbjct: 947 TPSRTRLDMVNSFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGR 1004
Query: 535 AYRLGQKRVVHVYHLITSETLE 556
A+R+GQKRVV V+ +IT T+E
Sbjct: 1005 AHRIGQKRVVQVFRMITKGTIE 1026
>gi|375146815|ref|YP_005009256.1| SNF2-related protein [Niastella koreensis GR20-10]
gi|361060861|gb|AEV99852.1| SNF2-related protein [Niastella koreensis GR20-10]
Length = 954
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 135/515 (26%), Positives = 220/515 (42%), Gaps = 73/515 (14%)
Query: 57 TVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGK 116
TV+E VP + K+ P+Q++GFE++ + L E G G ++ G GK
Sbjct: 480 TVYE-VPAVINAKLRPYQQKGFEWM-------LLLAE--------AGAGACLADDMGLGK 523
Query: 117 TGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNG 176
T T+ L + R +I+ P S++ W +E +K+ P + +G
Sbjct: 524 TLQTISVLTHQLHEKANQRHLIVCPSSLIYNWSQELQKFS----------PHVKVLIYHG 573
Query: 177 AVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLF 236
+ + G +V + Y GT + +E+ I G
Sbjct: 574 GNRAIQDAATGDYQVIITSY--------GTVRQDI-----------EEMCAINF---GTV 611
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS-LVRQEFGEVLRT 295
V DE H +N + KA+ R+++ R+ LSGTP NN +L L+ L+ FG
Sbjct: 612 VLDESHNIKNPAAQITKAVERLQSGFRVALSGTPVMNNTFDLYAQLNFLLPGIFG----- 666
Query: 296 VRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRH 355
RE + ++A I R+ +K+K L+ APFV + LP
Sbjct: 667 ----SREFFRREYADAIDQ------RRESDKIKTLQRITAPFVLRRTKEQVASDLPAKTE 716
Query: 356 SVVILQPDEFQKRLCKAV-EGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARL 414
V+ + QKRL + + ++ V LN L+ + + + + ++ L
Sbjct: 717 MVMWCEMSMAQKRLYDEIKDSIRQSVFLNIEQEGLNKSKLAVLKGMLKLRQICNSPLLLP 776
Query: 415 KLDPEAGIKTRFLLILLELSTN---EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYM 471
+ + L++ EL N KVLVFSQ+ L L+ E R +G ++
Sbjct: 777 SEEQTCNDSVKTDLLMNELQNNLKDHKVLVFSQFTSMLNLLAENCR-----EQGIAYYHL 831
Query: 472 DGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531
DG +KRQ +N P++ + L S KA G+NL AS V+L D WN V++QA
Sbjct: 832 DGSTPPEKRQELVNQFQAPNNTTNVFLISLKAGNAGLNLTAASYVILFDPWWNTAVQQQA 891
Query: 532 ISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
I R +R+GQ + V Y +I +T+E + Q K
Sbjct: 892 IDRTHRIGQTKNVFAYKMICKDTIEEKIISLQQHK 926
>gi|50294037|ref|XP_449430.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528744|emb|CAG62406.1| unnamed protein product [Candida glabrata]
Length = 920
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 156/610 (25%), Positives = 257/610 (42%), Gaps = 96/610 (15%)
Query: 40 SGFDSQTGCDPFTHA--QGTVWELVPRDVRKKMF-PHQREGFEFIWKNIAGGIDLDELKN 96
S FD T +P QG+ +++ + KM HQR G +F++ + G ++ +
Sbjct: 234 SLFDCNTIENPLIMNTFQGSEVDIIVDPLLCKMLRNHQRIGVKFMYDCLLG-LETNLTAE 292
Query: 97 STSTGGG--------NGCIISHAPGTGKTGLTLVFLQAYMKLHP-----RC--------- 134
ST GCI++ G GKT +T+ + +K P +C
Sbjct: 293 STDDKSCRLERDSDIKGCILADDMGLGKTLMTITLIWTLLKQTPFASKVQCSQLGVPLSG 352
Query: 135 ---RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKV 191
+ VI+ P +++ W+ EFKKW LN+ G + L K+
Sbjct: 353 MISKVVIVCPVTLIGNWKREFKKW------LGLNRI--------GILTLNPKNNVDMDKI 398
Query: 192 GLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCM 251
+ ++K+ + ILG +EK+++ E D L + DEGH +N + +
Sbjct: 399 SVRNFIKV-NRTYQVLILG-----YEKVLTVQEELLKQKDKLDLLICDEGHRLKNGASKI 452
Query: 252 FKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR-------QEFGEVLRTVRKSGREIS 304
K L + +++IL+GTP QN+ E + V F ++ R+I+
Sbjct: 453 LKVLKSLDIDKKVILTGTPIQNDLNEFFTIIDFVNPGVLGTYASFKKLYINPISRARDIN 512
Query: 305 KAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPD- 363
+ +I + +EK +L E F+ +L + LP ++ +P
Sbjct: 513 NKFNTKVI--------EQGEEKSNQLIEFTKRFILRRSNNILSKFLPPKTDIILFCRPTI 564
Query: 364 EFQKRLCKAVEGVK---SFVELNYCVSLLSV------HPSLLPQQFFESFDVDSAKLARL 414
E K +E V+ + + N + L+++ PSLL + +VDS
Sbjct: 565 EQIKAFRDIIENVRVDMNNITFNTSLGLINLMKKVCNSPSLLCNDPYYQSNVDSNIFTVS 624
Query: 415 KLDPEAG---IKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR--FNWREGQEVL 469
+G + LL + S EKV++ S Y + L +I + N R
Sbjct: 625 NKSNSSGKLTVLLELLLEIKATSPMEKVVIVSNYTQSLDIIQGLMNSNQLSNCR------ 678
Query: 470 YMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVER 529
+DG K+R +N N+ + +L S KA G+NL+GASR+VL D WNP V+
Sbjct: 679 -LDGATPAKQRDMLVNTFNNNPNIFGFLL-SAKAGGVGLNLIGASRLVLFDNDWNPAVDL 736
Query: 530 QAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQ------ARKVWWSNMVFPSSDGGGND 583
QA+SR +R GQKR ++Y LIT+ ++ L+RQ RK SN S G ND
Sbjct: 737 QAMSRIHREGQKRPCYIYRLITTGCIDEKILQRQLMKHNLTRKFLSSNT---SDTGSAND 793
Query: 584 QTTASEPLED 593
L+D
Sbjct: 794 DLFDKSDLKD 803
>gi|284802036|ref|YP_003413901.1| hypothetical protein LM5578_1791 [Listeria monocytogenes 08-5578]
gi|284995178|ref|YP_003416946.1| hypothetical protein LM5923_1743 [Listeria monocytogenes 08-5923]
gi|284057598|gb|ADB68539.1| hypothetical protein LM5578_1791 [Listeria monocytogenes 08-5578]
gi|284060645|gb|ADB71584.1| hypothetical protein LM5923_1743 [Listeria monocytogenes 08-5923]
Length = 1072
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 143/511 (27%), Positives = 217/511 (42%), Gaps = 88/511 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 608 LPKGLKAELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 652
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV II P S+L W+ E +K+ IP L+ + S +A
Sbjct: 653 SFLASELEDNPNLKPVLIITPASLLYNWQSELEKFAPAIPVTVLHGTKQS------RMAE 706
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
M+ K G V LI Y L I+ + F + + DE
Sbjct: 707 MEEMKHGH--VYLISYPSLRQ-----DIVHFADVAFSSV-----------------IIDE 742
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR
Sbjct: 743 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKF---- 798
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+EI A +I + +KEL +KI T L L + ++ +
Sbjct: 799 KEIPYDNIAKMIRPF--LLRRLKQDVVKELPDKIE--------TNLYSELTDEQKTIYLA 848
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQQFFESFDVDSAKLARLK 415
++ Q L +A G + L + PSL F E++ +S KL +L
Sbjct: 849 YLEKIQADL-EASNGNAGEERIKLLAGLTRLRQICCDPSL----FVENYQGESGKLLQL- 902
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
F I +++L+FSQ+ L +I ++L EGQ + YMDGK
Sbjct: 903 ----------FDTIQTARENGKRILLFSQFTGMLGIIRQKLEE-----EGQPLFYMDGKT 947
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
K R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA RA
Sbjct: 948 PSKTRLDMVNAFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRA 1005
Query: 536 YRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+R+GQKRVV V+ +IT T+E Q +K
Sbjct: 1006 HRIGQKRVVQVFRMITKGTIEERIFELQKKK 1036
>gi|405951944|gb|EKC19810.1| DNA repair and recombination protein RAD54-like protein
[Crassostrea gigas]
Length = 564
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 125/413 (30%), Positives = 199/413 (48%), Gaps = 52/413 (12%)
Query: 191 VGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTC 250
G ++V L + IL +SY F +L S G + GL + DEGH +N +
Sbjct: 75 AGADQFVTLKGGRNPHPILIISYETF-RLHSTVMHKGEV----GLVICDEGHRLKNSENQ 129
Query: 251 MFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHAS 310
++AL+ ++ RRR++LSGTP QN+ E SLV G +L T +E K
Sbjct: 130 TYQALNGMRARRRVLLSGTPIQNDLLEY---FSLVHFVNGGILGT----AQEFKKRFETP 182
Query: 311 LISSIGRCANHRDD------EKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDE 364
++ GR A+ D+ EKL EL + + + +L + LP VV + +
Sbjct: 183 ILR--GRDADATDEDHKKGQEKLLELADVVNRCIIRRTQALLTKYLPVKVEQVVCCRLTQ 240
Query: 365 FQKRLCKAVEGVKSF---------VELNYCVSL--LSVHPSLLPQQFFE-------SFDV 406
Q L K + K F L++ L L HP L+ ++ + + D+
Sbjct: 241 TQSELYKLLVRSKGFEVEQDEKTSTTLSFITQLKKLCNHPDLIYEKCLQRAPGYDGTLDL 300
Query: 407 ----DSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNW 462
+ K+ R +L + + R LL L++ T++KV++ S Y + L L E L H+ +
Sbjct: 301 FPPNHTTKIVRPELSGKVLVLDR-LLALIKAQTSDKVVLVSNYTQTLDL-FETLCHQRRY 358
Query: 463 REGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
LY +DG +KKR + N+PSS I + S+KA G+NL+GA+R+V+ D
Sbjct: 359 ------LYVRLDGSMTIKKRAKVVEQFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFD 412
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
WNP + QA++R +R GQK+ +Y LI + T+E +RQ K S+ V
Sbjct: 413 PDWNPANDDQAMARCWRDGQKKQCFIYRLIATGTIEEKIFQRQTHKKALSSCV 465
>gi|431906391|gb|ELK10588.1| Chromodomain-helicase-DNA-binding protein 5 [Pteropus alecto]
Length = 1842
Score = 133 bits (334), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 148/567 (26%), Positives = 252/567 (44%), Gaps = 81/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 595 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 639
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 640 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAVR 698
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 699 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 748
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 749 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 808
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 809 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 850
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P + L
Sbjct: 851 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFP------VAAVAPVL 903
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 904 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 958
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 959 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1018
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1019 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1078
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1079 TKQE-LDDILKFGTEELFKDDVEGMVS 1104
>gi|240278991|gb|EER42497.1| dsDNA-dependent ATPase [Ajellomyces capsulatus H143]
gi|325090250|gb|EGC43560.1| dsDNA-dependent ATPase [Ajellomyces capsulatus H88]
Length = 974
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 144/550 (26%), Positives = 221/550 (40%), Gaps = 93/550 (16%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQREG +F+++ + G + G G I++ G GKT T+ +
Sbjct: 314 KHLREHQREGVKFLYECVMG----------MRSFNGEGAILADEMGLGKTLQTIALIWTL 363
Query: 128 MKLHP--RCRPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P +PV I+ P +++ W +EF+KW G E G
Sbjct: 364 LKQNPIYEAQPVVKKALIVCPVTLIDNWRKEFRKW--------------LGNERVGVFVA 409
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTG--ILGLSYRLF----EKLVSGDELSGILLDLPG 234
R R L + MG ++ + Y E+L G SGI
Sbjct: 410 DAKRTR------------LTDFTMGKSYSVMIIGYERLRTVQEELSKG---SGI-----D 449
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294
+ + DEGH R +A+ + T +RI+LSGTP QN+ E + V +
Sbjct: 450 IVIADEGHRMRTVQNKSAQAIQSLNTSKRIVLSGTPIQNDLTEFFAMVDFVNPGLLGTFK 509
Query: 295 TVRKS--GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPG 352
K G + + +L I + + + +EL + F+ +L + LP
Sbjct: 510 MFMKEFEGPIVKSRQPGALEKDI-----EKGEARSEELTNLTSLFILRRTADILLKYLPP 564
Query: 353 LRHSVVILQPDEFQKRL-----------CKAVEGVKSFVELNYCVSLLSVHPSLL----- 396
V+ P QK + C A+ +S ++L + L PSLL
Sbjct: 565 KTEYVLFCNPTSSQKNIYHYVLSSPIFQC-ALGNSESALQLITILKKLCNSPSLLKPRNS 623
Query: 397 ---PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPLT 450
P + L P + K R L LL +T+EKV++ S Y L
Sbjct: 624 DQTPNSTLGALISSLPPTVLRHLSPASSGKIRVLDQLLHNIRHTTSEKVVLISNYTSTLD 683
Query: 451 LIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI-MLASTKACCEGIN 509
L+ F L +DG KRQ ++ N SS + L S KA G+N
Sbjct: 684 LLAT-----FLTSLSLPFLRLDGSTPPSKRQGLVDDFNRSSSSSVFAFLLSAKAGGTGLN 738
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
L+GASR++L DV WNP + QA++R +R GQKR VY L+ LE +RQ K+
Sbjct: 739 LIGASRLILFDVDWNPATDIQAMARIHRDGQKRHCRVYRLVLKGALEEKIWQRQVTKIGL 798
Query: 570 SNMVFPSSDG 579
++ V G
Sbjct: 799 ADSVMDQKTG 808
>gi|115387749|ref|XP_001211380.1| hypothetical protein ATEG_02202 [Aspergillus terreus NIH2624]
gi|114195464|gb|EAU37164.1| hypothetical protein ATEG_02202 [Aspergillus terreus NIH2624]
Length = 1192
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 64/501 (12%)
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYN 163
G II G GKT + FL +P +++ P +++ W EF W P +
Sbjct: 413 GGIIGDEMGLGKTIQVIAFLAGLHYSKKLTKPAIVVCPATVMKQWVTEFHTW---WPAFR 469
Query: 164 LNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD 223
++ SG +++ R R + L+ + + + + L R+ +++V
Sbjct: 470 VSILHTSGS------GMVNIRNESRREEALL--SQTWDSRASSSGLKAGRRVVKRVVEEG 521
Query: 224 EL-----SGIL----LDLP---GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPF 271
+ SG+L L +P G + DEGH RN +T + ++T RIILSGTP
Sbjct: 522 HVLVTTYSGLLSYASLLIPVEWGCAILDEGHKIRNPNTAITIHAKELRTPHRIILSGTPM 581
Query: 272 QNNFQELENTLSLV-RQEFGEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDDEK 326
QNN EL + V G ++ + I + +A+ + + +CA
Sbjct: 582 QNNLTELWSLFDFVFPMRLGTLVNFRNQFEFPIRQGGYANASNLQVQTAAKCA------- 634
Query: 327 LKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV---EGVKSFV--- 380
+ LK+ I+P++ + LP V+ + + Q++ KA + ++S +
Sbjct: 635 -ETLKDAISPYLLQRFKIDVAADLPKKSEQVLFCRLTKLQRQSYKAFLASQEMQSILRGR 693
Query: 381 -ELNYCVSLLSV---HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--S 434
+ Y + +L HP L +F SA A ++G K + + LLEL
Sbjct: 694 RQALYGIDILRKICNHPDLQSHKF-------SAHKAAYGGAEKSG-KMQVVRSLLELWRD 745
Query: 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQ 493
T K L+F+Q+ ++++ L N G MDG + +RQS ++ N DPS
Sbjct: 746 TGHKTLLFAQH----RIMLDILEKFVNSLSGINYRRMDGTTPIAQRQSMVDEFNKDPS-- 799
Query: 494 ARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553
+ L +TK G+NL GA RV++ D WNP + QA RA+RLGQKR V +Y L+T+
Sbjct: 800 LHLFLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDMQARERAWRLGQKREVTIYRLMTAG 859
Query: 554 TLEWDKLRRQARKVWWSNMVF 574
T+E RQ K + +N +
Sbjct: 860 TIEEKIYHRQVFKQFLTNKIL 880
>gi|327295002|ref|XP_003232196.1| dsDNA-dependent ATPase [Trichophyton rubrum CBS 118892]
gi|326465368|gb|EGD90821.1| dsDNA-dependent ATPase [Trichophyton rubrum CBS 118892]
Length = 923
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 141/546 (25%), Positives = 224/546 (41%), Gaps = 83/546 (15%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQREG +F+++ + G + G G I++ G GKT T+ +
Sbjct: 251 KHLREHQREGVKFLYECVMGLRPFN----------GEGAILADEMGLGKTLQTIALIWTL 300
Query: 128 MKLHP--RCRPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P +PV I+ P +++ W++EFKKW L + +G
Sbjct: 301 LKQNPIYGSQPVVKKALIVCPVTLINNWKKEFKKW--------LGSDRIGVFVADGKGNR 352
Query: 181 MDNRKRGRG-KVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGL--FV 237
+ + GR V +I Y +L S + ++L G PG+ V
Sbjct: 353 ISDFTMGRSYSVMIIGYERLRSVQ-------------DQLTKG----------PGIDIVV 389
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DEGH + +A+ + T RRIILSGTP QN E + V L T +
Sbjct: 390 ADEGHRLKTVQNKSAQAIQSLNTTRRIILSGTPIQNELSEFFAMVDFVNPAL---LGTFK 446
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
RE + + + + + +EL E +PF+ +L + LP +
Sbjct: 447 SFMREFEGPIVGARQPNAPKKVIEKGKARSEELAELTSPFILRRTADILSKHLPPKTEYI 506
Query: 358 VILQPDEFQKRLCKAV----------EGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVD 407
+ P Q+ + V +S ++L + + PSLL + ++ +
Sbjct: 507 LFCNPTSAQRSVYHHVLASPMFQSVLRNSESALQLITILKKVCNSPSLLKPKVEDNGKCE 566
Query: 408 SAKLARL--KLDPE------AGIKTRF-----LLILLELSTNEKVLVFSQYIEPLTLIME 454
++ L L P AG + LL L+ T EKV++ S Y
Sbjct: 567 DTSMSALLSSLPPSIHRCLAAGSSGKIRVLDQLLYNLQSKTTEKVVLVSNYTS-----TL 621
Query: 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGINLVGA 513
L L +DG +RQ+ + N PSS L S KA G+NL+GA
Sbjct: 622 NLLANLLTSLDLPFLRLDGSTPATRRQALVEDFNRSPSSSCFAFLLSAKAGGTGLNLIGA 681
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
SR+VL DV WNP + QA++R +R GQKR H+Y L+ +E +RQ K+ ++ V
Sbjct: 682 SRLVLFDVDWNPATDIQAMARIHRDGQKRHCHIYRLLLKGGIEEKIWQRQVTKLGLADSV 741
Query: 574 FPSSDG 579
G
Sbjct: 742 MDQKGG 747
>gi|395533467|ref|XP_003768781.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein 3 [Sarcophilus harrisii]
Length = 1971
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 136/501 (27%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 729 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 786
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K +R VK + +L S
Sbjct: 787 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMRREAQVKFH-------VLLTS 836
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 837 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 891
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 892 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 933
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 934 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 992
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 993 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1047
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1048 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1102
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1103 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1162
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1163 ASVEERITQVAKRKMMLTHLV 1183
>gi|324500109|gb|ADY40062.1| Chromodomain-helicase-DNA-binding protein 1 [Ascaris suum]
Length = 1095
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 129/503 (25%), Positives = 225/503 (44%), Gaps = 84/503 (16%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFY 162
N CI++ G GKT ++ FL + P +++ P S + W+ EF+ W D+
Sbjct: 521 NSCILADEMGLGKTIQSIAFLSVLFHQYDLYGPFLVVVPLSTMAAWQREFENWACDL--- 577
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYS-WKMGTGILGLSYRL--FEKL 219
V M G V Y++ + + GT L ++ L +E L
Sbjct: 578 -------------NVVTYM-------GDVTSRDYIRQFEMFVQGTKRLKVNVLLTTYEIL 617
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ G + DE H +ND++ ++++L T R++++GTP QN+ +EL
Sbjct: 618 LKDKAFLGAFE--WAVLAVDEAHRLKNDESLLYRSLFDFSTNHRLLITGTPLQNSLKELW 675
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVN 339
L + + +S + + H +HR + L K+ PF+
Sbjct: 676 ALLHFI-------MPNKFESWDDFEEDHHD---------PDHR---AIASLHRKLEPFLL 716
Query: 340 VHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEG-VKSFVELNYCV 386
+++SLP LR + I Q ++ K L K V+G + FV L +
Sbjct: 717 RRVKKDVEKSLPAKVEQILRVDMTIQQKQYYKWILTKNYKELSKGVKGSINGFVNLIMEL 776
Query: 387 SLLSVHPSLLPQQFFESFDVDS-AKLARLKLDPEAGIKTRFLLILLE------LSTNEKV 439
H SL+ + ++ ++ ++ A+L +L +K+ LILL+ T +V
Sbjct: 777 KKCCNHASLV--RAYDHYEENAQARLQQL-------MKSSGKLILLDKLLCRLHETGHRV 827
Query: 440 LVFSQYIEPLTLIMEQLR-HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498
L+FSQ + L ++ E L+ RF + +DG R+++++ N S L
Sbjct: 828 LIFSQMVMMLDIVQEYLQLRRFPSQR------LDGSMRADLRKAALDHFNAEGSTDFCFL 881
Query: 499 ASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWD 558
ST+A GINL A V++ D WNP + QA+SRA+R+GQK+ V++Y L+T ++E +
Sbjct: 882 LSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQKKQVNIYRLVTKASVEEE 941
Query: 559 KLRRQARKVWWSNMVFPSSDGGG 581
+ R RK+ ++V D G
Sbjct: 942 IVERAKRKLVLDHLVIQRMDTTG 964
>gi|326473366|gb|EGD97375.1| dsDNA-dependent ATPase [Trichophyton tonsurans CBS 112818]
Length = 922
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 141/546 (25%), Positives = 225/546 (41%), Gaps = 83/546 (15%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQREG +F+++ + G + G G I++ G GKT T+ +
Sbjct: 250 KHLREHQREGVKFLYECVMGLRPFN----------GEGAILADEMGLGKTLQTIALIWTL 299
Query: 128 MKLHP--RCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P +PVI + P +++ W++EFKKW L + +G
Sbjct: 300 LKQNPIYGSQPVIKKALIVCPVTLINNWKKEFKKW--------LGSDRIGVFVADGKGNR 351
Query: 181 MDNRKRGRG-KVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG--LFV 237
+ + GR V +I Y +L S + ++L G PG + V
Sbjct: 352 LSDFTMGRSYSVMIIGYERLRSVQ-------------DQLTKG----------PGIDIVV 388
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DEGH + +A+ + T RRIILSGTP QN E + V +L T +
Sbjct: 389 ADEGHRLKTVQNKSAQAIQSLNTTRRIILSGTPIQNELSEFFAMVDFVNP---ALLGTFK 445
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
RE + + + + + +EL E +PF+ +L + LP +
Sbjct: 446 SFMREFEGPIVGARQPNAPKKVIEKGKARSEELAELTSPFILRRTADILSKHLPPKTEYI 505
Query: 358 VILQPDEFQKRLCKAV----------EGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVD 407
+ P Q+ + V +S ++L + + PSLL + ++ +
Sbjct: 506 LFCNPTSAQRNVYHHVLASPLFQSVLRNSESALQLITILKKVCNSPSLLKPKVEDNGKGE 565
Query: 408 SAKLARL--KLDPE------AGIKTRF-----LLILLELSTNEKVLVFSQYIEPLTLIME 454
+ ++ L P AG + LL L+ T EKV++ S Y
Sbjct: 566 DSSMSAFISSLPPNIHRCLAAGSSGKIRVLDQLLYNLQSKTTEKVVLVSNYTS-----TL 620
Query: 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGINLVGA 513
L L +DG KRQ+ + N PSS L S KA G+NL+GA
Sbjct: 621 NLLANLLTSLDLPFLRLDGSTPATKRQALVEDFNRSPSSSCFAFLLSAKAGGTGLNLIGA 680
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
SR+VL DV WNP + QA++R +R GQKR H+Y L+ +E +RQ K+ ++ V
Sbjct: 681 SRLVLFDVDWNPATDIQAMARIHRDGQKRHCHIYRLLLKGGIEEKIWQRQVTKLGLADSV 740
Query: 574 FPSSDG 579
G
Sbjct: 741 MDQKGG 746
>gi|422809725|ref|ZP_16858136.1| helicase, Snf2 family [Listeria monocytogenes FSL J1-208]
gi|378753339|gb|EHY63924.1| helicase, Snf2 family [Listeria monocytogenes FSL J1-208]
Length = 1072
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 141/501 (28%), Positives = 214/501 (42%), Gaps = 88/501 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 608 LPKGLKAELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 652
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV II P S+L W+ E +K+ IP L+ + S +A
Sbjct: 653 SFLASELEENPNLKPVLIITPASLLYNWQSELEKFAPAIPVTVLHGTKQS------RMAE 706
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
M+ K G V LI Y L I+ + F + + DE
Sbjct: 707 MEEMKHGH--VYLISYPSLRQ-----DIVHFADVAFSSV-----------------IIDE 742
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR
Sbjct: 743 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKF---- 798
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+EI A +I + +KEL +KI T L L + ++ +
Sbjct: 799 KEIPYDNIAKMIRPF--LLRRLKQDVVKELPDKIE--------TNLYSELTDEQKTIYLA 848
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQQFFESFDVDSAKLARLK 415
++ Q L +A G + L + PSL F E++ +S KL +L
Sbjct: 849 YLEKIQADL-EASNGNAGEERIKLLAGLTRLRQICCDPSL----FVENYQGESGKLLQL- 902
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
F I +++L+FSQ+ L +I ++L EGQ + YMDGK
Sbjct: 903 ----------FDTIQTARENGKRILLFSQFTGMLGIIRQKLEE-----EGQPLFYMDGKT 947
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
K R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA RA
Sbjct: 948 PSKTRLDMVNAFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRA 1005
Query: 536 YRLGQKRVVHVYHLITSETLE 556
+R+GQKRVV V+ +IT T+E
Sbjct: 1006 HRIGQKRVVQVFRMITKGTIE 1026
>gi|332019859|gb|EGI60320.1| DNA repair and recombination protein RAD54B [Acromyrmex echinatior]
Length = 857
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 150/557 (26%), Positives = 243/557 (43%), Gaps = 84/557 (15%)
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
LV + K+ HQR G F+++ + G G I++ G GKT
Sbjct: 269 LVDSCLVAKLREHQRHGIVFLYECLMG----------LKVPNYFGAILADEMGLGKTLQC 318
Query: 121 LVFLQAYMKLHPRCRPVI-----IAPRSMLLTWEEEFKKW-GIDIPFYNLNKPELSGKEN 174
+ + +K P +P+I + P S+ WE+EF KW G F P + G +N
Sbjct: 319 ITLIWTMLKKGPYGKPIIKRVLIVTPSSLCNNWEKEFVKWLGRHRIF-----PYVIGGKN 373
Query: 175 NGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG 234
I+Y + I+ +SY +F K + E++ + DL
Sbjct: 374 KPK--------------DFIKYPR-------NSIMIISYEMFIKCHT--EINEMTFDL-- 408
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294
V DEGH +N + K L+ I ++RI+L+GTP QN+ +E + V
Sbjct: 409 -IVCDEGHRLKNSNIKAAKMLNEINCKKRIVLTGTPIQNDLKEFYALIDFVNPGILGTPN 467
Query: 295 TVRKSGRE-ISKAKHASLISSIGRCANHRDDEKLKELK--------EKIAPFVNVHKGTV 345
+ E I A+++S + N R E K K + I ++ V
Sbjct: 468 EYKSYYEEPIIAAQYSSADDDVLSLGNERSAELYKHTKSFILRRSQKAINKYLPYKYEIV 527
Query: 346 LQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSV--HPSL-LPQQFFE 402
L SL + + L D + ++C +E KS + L+ +L + HP+L L ++
Sbjct: 528 LFCSLTKKQKDLYSLITDAWFNKIC--LED-KSNIHLSIITALKKICNHPNLFLNEEEKA 584
Query: 403 SFDVDS--AKLARLKLDPE----AGIKTRFLLILLELS-TNEKVLVFSQYIEPLTLI--- 452
+DV S + L+++K D G T ++ L T+EK+++ S Y + L L+
Sbjct: 585 LYDVLSKVSYLSQIKRDENFTEYCGKVTIVQTLMRNLKKTDEKLVLVSYYTQTLDLLETI 644
Query: 453 --MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINL 510
ME+L+ L +DG R N + ++++L S KA G+NL
Sbjct: 645 CNMERLK----------FLRLDGATSSTIRLKITEQFNTQTDNSKVLLLSAKAGGVGLNL 694
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS 570
GASR+VL D WNP + QA++R +R GQKR V++Y L+T+ T+E +RQ K S
Sbjct: 695 PGASRLVLFDSDWNPASDMQAMARIWRDGQKRNVYIYRLLTTGTIEEKIYQRQISKANLS 754
Query: 571 NMVFPSSDGGGNDQTTA 587
V + G +TA
Sbjct: 755 ETVVDLNYLGSLKLSTA 771
>gi|340349785|ref|ZP_08672788.1| hypothetical protein HMPREF9419_1019 [Prevotella nigrescens ATCC
33563]
gi|339609988|gb|EGQ14849.1| hypothetical protein HMPREF9419_1019 [Prevotella nigrescens ATCC
33563]
Length = 1345
Score = 132 bits (333), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 142/524 (27%), Positives = 222/524 (42%), Gaps = 85/524 (16%)
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
VP + ++ +Q EGFE++ S T G G ++ G GKT T
Sbjct: 884 FVPNTLNAQLRDYQEEGFEWL---------------SKVTSWGAGVCLADDMGLGKTLQT 928
Query: 121 LVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+ L ++ + +++AP S++ W E +++ P LN L+ +N A
Sbjct: 929 IALL---LEQSSKGASLVVAPASVVPNWRNELRRFA---P--TLNVIVLNQSDNRTA--- 977
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
D K G V + Y L + +K++ E + + LD E
Sbjct: 978 -DIDKVQAGDVVVTTYTLL--------------NIEQKILVTREWNVVCLD--------E 1014
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
HT +N +T M KA ++K RR++IL+GTP QN+ EL N +
Sbjct: 1015 AHTIKNANTKMSKAAMQLKARRKVILTGTPIQNHLSELWNLFQFINPGL--------LGS 1066
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV-NVHKGTVLQESLPGLRHSVVI 359
E K K I + D E+ +L+ IAPF+ KG V++E L I
Sbjct: 1067 AEQFKQKF------IQPIEGNNDKERQSQLRRLIAPFLLRRTKGEVIKE----LPDKTDI 1116
Query: 360 LQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPE 419
P E E + VE L+ SL E + + +D
Sbjct: 1117 QLPVELSSNEITMYEMYRKMVE-----ELVRTDKSLNVSTLAEITKLRQMACSCSLVDKS 1171
Query: 420 AGIKTRFLLILLELS-----TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGK 474
+ + LL ++L+ + + LVFSQ+ T +E++R+ + LY+DG
Sbjct: 1172 WKVPSSKLLAFIDLAESLNDSGNRALVFSQF----TSFLEEVRYAMD-NAQLPYLYLDGS 1226
Query: 475 QDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISR 534
+ KR+ + S + L S KA G+NL GA+ VV LD WNP +E+QA R
Sbjct: 1227 TPMAKREQLVKDFQ--SGRCPFFLISLKAGGLGLNLTGANYVVHLDPWWNPAIEQQATDR 1284
Query: 535 AYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
AYR+GQ++ V VYHLI+ T+E LR K ++ + SD
Sbjct: 1285 AYRIGQQQDVTVYHLISQHTIEEKILRLHKTKRDLADSLLEGSD 1328
>gi|255712323|ref|XP_002552444.1| KLTH0C05038p [Lachancea thermotolerans]
gi|238933823|emb|CAR22006.1| KLTH0C05038p [Lachancea thermotolerans CBS 6340]
Length = 894
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 150/590 (25%), Positives = 254/590 (43%), Gaps = 84/590 (14%)
Query: 51 FTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAG----GIDLDELKNST---STGGG 103
FT A+ V +V + K + PHQR G +F++ + G D+ K S T
Sbjct: 231 FTGAECDV--IVDPILSKHLRPHQRVGVKFMYDCVMGLSRPSQHEDDGKTSCLLQKTDEV 288
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPR----------------CRPV-IIAPRSMLL 146
GC+++ G GKT +T+ + +K P C V ++ P +++
Sbjct: 289 QGCLLADEMGLGKTLMTIALIWTLLKQTPTPSKETTSQFGIPLQGLCNKVLVVCPVTLIA 348
Query: 147 TWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGT 206
W+ EF KW LN+ G + L + K+ + ++++ +
Sbjct: 349 NWKREFSKW------LGLNRI--------GILTLDSKSTPEKDKLHVRNFLRV---QRTY 391
Query: 207 GILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIIL 266
+L L Y EKL+S E GL V DEGH +N + AL+ + R+++L
Sbjct: 392 QVLILGY---EKLLSVTEALQQESSSIGLMVCDEGHRLKNGQSKTLSALNSLDISRKVLL 448
Query: 267 SGTPFQNNFQELENTLSLVRQE-FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDE 325
+GTP QN+ E + + G + R I++A+ + + R +
Sbjct: 449 TGTPIQNDLTEFFTIIDFLNCGIMGNFSQFKRDYINPITRARDVN--NKYNETIQTRGKD 506
Query: 326 KLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDE-----FQKRLCKAVEGVKSFV 380
+ EL + F + + LP V+ +P + F+K L A + S +
Sbjct: 507 RTDELIDATKKFTLRRTADTISKFLPPKTDVVLFCKPTKSQIQAFEKILTNAQLDLSS-I 565
Query: 381 ELNYCVSLLSV------HPSLLPQQ--FFESFDVDSAKLARLKLDPEAGIKTRFLLILLE 432
+ ++L+++ PSL+ Q + E+ S L LD K R LL LLE
Sbjct: 566 TPSSSLALITLFKKICNSPSLISQDSYYLENIKSKSDLTGCLGLDSG---KLRVLLALLE 622
Query: 433 ----LSTNEKVLVFSQYIEPLTLIMEQL-RHRFNWREGQEVLYMDGKQDVKKRQSSINVL 487
EKV++ S Y + L +I L +RF + +DG K+R +
Sbjct: 623 NIRSSYPQEKVVIVSNYTQTLDIIQNILTSNRFAFTR------LDGNTPTKERDRIVRAF 676
Query: 488 NDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVY 547
N S +L S K+ G+NL+GASR+VL D WNP ++ QA+SR +R GQ+R +Y
Sbjct: 677 NTVPSLFAFLL-SAKSGGVGLNLIGASRLVLFDNDWNPAIDLQAMSRIHRDGQRRPCFIY 735
Query: 548 HLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILE 597
L+T+ ++ +RQ K+ S G+ ++++S +D + E
Sbjct: 736 RLLTTGCIDEKIFQRQLMKISLSFRFM------GDQESSSSIKADDNLFE 779
>gi|351713762|gb|EHB16681.1| Chromodomain-helicase-DNA-binding protein 5 [Heterocephalus glaber]
Length = 2263
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 254/567 (44%), Gaps = 82/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 926 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 970
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 971 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 1029
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 1030 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 1079
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 1080 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPEXN--LEGFLEEFADISK 1137
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 1138 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 1179
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 1180 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 1233
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 1234 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1288
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1289 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1348
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1349 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1408
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1409 TKQE-LDDILKFGTEELFKDDVEGMMS 1434
>gi|261368900|ref|ZP_05981783.1| SNF2 family protein [Subdoligranulum variabile DSM 15176]
gi|282568998|gb|EFB74533.1| SNF2 family N-terminal domain protein [Subdoligranulum variabile
DSM 15176]
Length = 811
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 145/528 (27%), Positives = 221/528 (41%), Gaps = 121/528 (22%)
Query: 62 VPRDVRKKMFPHQREGFE---FIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
+P V K P+QREG + F++ N GG D++ G GKT
Sbjct: 356 LPEPVDKMALPYQREGIQWLKFLFLNHLGGCLADDM------------------GLGKTF 397
Query: 119 LTLVFLQAY-MKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGA 177
+ FL+ +K H + + +I+ P+S+L W+ EF+K+ +N
Sbjct: 398 QVIAFLEDNDVKKHLQ-KVLIVVPKSLLTNWKREFEKFC-----------------SNYR 439
Query: 178 VALMDNRKRGR---GKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG 234
V + KR GK +I + Y+ T +L Y LD G
Sbjct: 440 VGIYHGNKRSELDFGKCDVI--ITTYN----TALLDKEY----------------LDHKG 477
Query: 235 --LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEV 292
+ V DE T +N + +A+ I +I LSGTP +N EL N + +V
Sbjct: 478 FTIVVLDEIQTVKNYKSITSQAIKEIHAEMKIGLSGTPMENGISELWNVMDIVNPG---- 533
Query: 293 LRTVRKSGREISKAKHASLISSIGRCANHR-DDEKLKELKEKIAPFVNVHKGTVLQESLP 351
+ H++ + HR D ELKE + F+ + + LP
Sbjct: 534 -----------AFPGHSAFL--------HRYHDRNYDELKEILNLFILRRMKKDVLKQLP 574
Query: 352 GLRHSVVILQPDEFQKRLCKAVE-GVKSFVE---------LNYCVSLL---SVHPSLLPQ 398
++ D Q+RL + VKS + + ++LL HP LL
Sbjct: 575 PKYEQIIYCDMDIAQRRLYTGINIAVKSAISRLKIFAAPVVLKGLTLLRECCCHPLLLDD 634
Query: 399 QFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRH 458
VDS KL LK+ L+ + K+L+FS Y L LI ++L
Sbjct: 635 TINVEGVVDSCKLDALKI-----------LVADLFESGHKILIFSNYTSMLHLIRQELEK 683
Query: 459 RFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVL 518
R ++ + Y+DGK +Q ++ V + A I L S KA G+NL A V++
Sbjct: 684 RSEYKAN--LFYLDGKT----QQRNLLVEQFEKASAGIFLISIKAGGVGLNLTSAQDVII 737
Query: 519 LDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
D WNPFVE+QAI RAYR+GQ++ V+VY L+ + T+E L Q K
Sbjct: 738 YDPWWNPFVEQQAIDRAYRIGQQQAVNVYKLVAANTIEEKILDMQKDK 785
>gi|390355907|ref|XP_003728652.1| PREDICTED: chromodomain-helicase-DNA-binding protein 2 isoform 2
[Strongylocentrotus purpuratus]
gi|390355909|ref|XP_781410.3| PREDICTED: chromodomain-helicase-DNA-binding protein 2 isoform 3
[Strongylocentrotus purpuratus]
Length = 1835
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 141/554 (25%), Positives = 235/554 (42%), Gaps = 98/554 (17%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFY 162
N I++ G GKT + FL +H P +I+ P S + +W+ EF+ W +
Sbjct: 562 NSVILADEMGLGKTIQVISFLSYLFNVHQLYGPFLIVVPLSTMTSWQREFEAWDSKM--- 618
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW-------KMGTGILGLSYRL 215
N V + G + ++ Y W K+ + +Y +
Sbjct: 619 ------------NVVVYI--------GDINSRNSIREYEWCVHGNRNKLKLNAILTTYEI 658
Query: 216 FEKLVSGDELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNN 274
K L +P + V DE H +NDD+ ++K+L +T R++++GTP QN+
Sbjct: 659 LLKD------KAFLGAVPWAVLVVDEAHRLKNDDSLLYKSLKEFETNHRLLITGTPLQNS 712
Query: 275 FQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKI 334
+EL + L + E + + K +ASL +++
Sbjct: 713 LKELWSLLHFIMPERFPTWEIFEEEFSQADKNGYASL-------------------HQEL 753
Query: 335 APFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEG-VKSFV- 380
PF+ +++SLP LR + LQ ++ K LCK ++G SF+
Sbjct: 754 EPFLLRRVKKDVEKSLPAKVERILRVEMSSLQKQYYKFILTRNFKALCKGLKGNTSSFIN 813
Query: 381 ---ELNYCV--SLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
EL C SLL P + S KL L + L L E
Sbjct: 814 IMMELKKCCNHSLLIRPPEDESDPDLKYIIRGSGKLVLL---------DKLLTRLQE--R 862
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
+VL+FSQ + L ++ E L++R + +DG + R+ +++ N SQ
Sbjct: 863 GHRVLIFSQMVRMLDILSEYLQYRHFQHQ-----RLDGSIRGEIRKQALDHFNAEGSQDF 917
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
L ST+A G+NL A V++ D WNP + QA++RA+R+GQ+R V++Y L+T +T+
Sbjct: 918 CFLLSTRAGGLGLNLASADTVIIFDSDWNPQNDIQAMARAHRIGQRRQVNIYRLVTKDTI 977
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGGND--QTTASEPLEDKIL--EEMAQLYNNPSETLI 611
E + + R RK+ ++V D G ++S+ D EE+ + +E L
Sbjct: 978 EEEIIERAKRKMVLDHLVIQRMDTTGRTVLSKSSSQASRDAPFSKEELTAILKFRAEELF 1037
Query: 612 NAIIPQPKETELIE 625
P +ETEL E
Sbjct: 1038 KE--PDGEETELPE 1049
>gi|326520307|dbj|BAK07412.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1148
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 138/550 (25%), Positives = 238/550 (43%), Gaps = 89/550 (16%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P + + ++PHQREG +++W + + TGG I+ G GKT
Sbjct: 408 LPGSIFEMLYPHQREGLKWLW-----------VLHCRGTGG----ILGDDMGLGKTMQVS 452
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
FL R +++AP+++L W +E G+ + + P ++ + + A
Sbjct: 453 SFLAGLFHCRLIKRVLVVAPKTLLAHWTKELSVVGLKHKIRDYSGPSVNVRNSELQYAFK 512
Query: 182 DNRKRGRGKVGLIRY-VKLYSWKMGTGIL--GLSYRLFEKLVSGDELSGILLDLPGLF-- 236
+ G + L Y + ++K+ G G ++KL+ GD + D G F
Sbjct: 513 E------GGILLTTYDIVRNNYKLIRGDFYNGNVEGKYDKLIRGDSYNDADEDEDGKFWN 566
Query: 237 --VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294
+ DEGH +N T ++L I RI++SGTP QNN +E+ E
Sbjct: 567 YVILDEGHIIKNPSTQRARSLLEIPCVHRIVISGTPIQNNLKEMWALFYFCCPE------ 620
Query: 295 TVRKSGREISKAKHASLISSIGRCANHRDDEK----LKELKEKIAPF--------VNVHK 342
V E +++I + A +R+ K L+E+I P+ V V
Sbjct: 621 -VLGDKDEFKSRYESAIIRGNDKNATNREKHTGSTVAKALRERIKPYFLRRMKSEVFVDT 679
Query: 343 GTVLQESLPGLRHSVVILQPDEFQKRLCKAV---EGVKSFVELNYCVSL-----LSVHPS 394
G+ + L +V L+ Q++L +A + V S ++ + ++ + HP
Sbjct: 680 GSADDKKLSKKNELIVWLRLTACQRQLYEAFLNSDLVHSSMQGSPLAAITVLKKICDHPL 739
Query: 395 LLPQQ----------------------FFESFDVDSAKLAR----LKLDPEAGIKTRFLL 428
+L ++ E ++ A +A L++D E K F++
Sbjct: 740 ILTKRAAEDILEGMEGMDVKLDNKDMGMVEKMAMNLADMAHDGEALQVDEEVSCKIIFIM 799
Query: 429 ILLE--LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINV 486
LL L VLVFSQ + L LI E + EG + L +DG + +R+ +
Sbjct: 800 SLLRKLLEEGHHVLVFSQTRKMLNLIQEAI-----LLEGYKFLRIDGTTKIAERERIVKD 854
Query: 487 LNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHV 546
+ A+I L +T+ G+ L A+RV+++D WNP + Q++ RAYR+GQ + V V
Sbjct: 855 FQE-GPGAQIFLLTTQVGGLGLTLTKAARVIVVDPAWNPSTDSQSVDRAYRIGQTKDVIV 913
Query: 547 YHLITSETLE 556
Y L+TS T+E
Sbjct: 914 YRLMTSGTIE 923
>gi|32563629|ref|NP_491994.2| Protein CHD-1 [Caenorhabditis elegans]
gi|25004979|emb|CAB07481.2| Protein CHD-1 [Caenorhabditis elegans]
Length = 1461
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 130/506 (25%), Positives = 221/506 (43%), Gaps = 88/506 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN I++ G GKT ++ L + + P +++ P S + W++EF +W P
Sbjct: 423 GNSSILADEMGLGKTIQSISLLASLFHRYDLAGPYLVVVPLSTMAAWQKEFAQWA---PE 479
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
NL V M G V ++ Y W KM + +Y +
Sbjct: 480 MNL-------------VVYM-------GDVVSRDMIRQYEWFVGGTKKMKINAILTTYEI 519
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
L LS I D L V DE H +ND++ ++K+L++ + +++++GTP QN+
Sbjct: 520 L--LKDKAFLSSI--DWAALLV-DEAHRLKNDESLLYKSLTQFRFNHKLLITGTPLQNSL 574
Query: 276 QELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIA 335
+EL L + E + + E +NH+ + L +K+
Sbjct: 575 KELWALLHFIMPEKFDCWEEFETAHNE----------------SNHKG---ISALHKKLE 615
Query: 336 PFVNVHKGTVLQESLPGLRHSVVILQPDEFQKR------------LCKAVEG-VKSFVEL 382
PF+ +++SLP ++ + QK+ L K V+G + FV L
Sbjct: 616 PFLLRRVKKDVEKSLPPKTEQILRVDMTAHQKQFYKWILTKNYRELSKGVKGSINGFVNL 675
Query: 383 NYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL------STN 436
+ H SL +Q+ +D +L +L +K+ LILL+
Sbjct: 676 VMELKKCCNHASLT-RQYDHIYDDAQGRLQQL-------LKSSGKLILLDKLLCRLKDKG 727
Query: 437 EKVLVFSQYIEPLTLIMEQLR-HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
+VL+FSQ + L ++ E L+ RF + +DG R+ +++ N P S
Sbjct: 728 HRVLIFSQMVMMLDILQEYLQLRRFPSQR------LDGSMRADLRKQALDHYNAPGSTDF 781
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
L ST+A GINL A V++ D WNP + QA+SRA+R+GQ + V++Y L+T ++
Sbjct: 782 AFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQTKTVNIYRLVTKGSV 841
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGG 581
E + + R RK+ ++V D G
Sbjct: 842 EEEIVERAKRKLVLDHLVIQRMDTTG 867
>gi|324500144|gb|ADY40077.1| Chromodomain-helicase-DNA-binding protein 1 [Ascaris suum]
Length = 1875
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 129/503 (25%), Positives = 225/503 (44%), Gaps = 84/503 (16%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFY 162
N CI++ G GKT ++ FL + P +++ P S + W+ EF+ W D+
Sbjct: 521 NSCILADEMGLGKTIQSIAFLSVLFHQYDLYGPFLVVVPLSTMAAWQREFENWACDL--- 577
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYS-WKMGTGILGLSYRL--FEKL 219
V M G V Y++ + + GT L ++ L +E L
Sbjct: 578 -------------NVVTYM-------GDVTSRDYIRQFEMFVQGTKRLKVNVLLTTYEIL 617
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ G + DE H +ND++ ++++L T R++++GTP QN+ +EL
Sbjct: 618 LKDKAFLGAFE--WAVLAVDEAHRLKNDESLLYRSLFDFSTNHRLLITGTPLQNSLKELW 675
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVN 339
L + + +S + + H +HR + L K+ PF+
Sbjct: 676 ALLHFI-------MPNKFESWDDFEEDHHD---------PDHR---AIASLHRKLEPFLL 716
Query: 340 VHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEG-VKSFVELNYCV 386
+++SLP LR + I Q ++ K L K V+G + FV L +
Sbjct: 717 RRVKKDVEKSLPAKVEQILRVDMTIQQKQYYKWILTKNYKELSKGVKGSINGFVNLIMEL 776
Query: 387 SLLSVHPSLLPQQFFESFDVDS-AKLARLKLDPEAGIKTRFLLILLEL------STNEKV 439
H SL+ + ++ ++ ++ A+L +L +K+ LILL+ T +V
Sbjct: 777 KKCCNHASLV--RAYDHYEENAQARLQQL-------MKSSGKLILLDKLLCRLHETGHRV 827
Query: 440 LVFSQYIEPLTLIMEQLR-HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498
L+FSQ + L ++ E L+ RF + +DG R+++++ N S L
Sbjct: 828 LIFSQMVMMLDIVQEYLQLRRFPSQR------LDGSMRADLRKAALDHFNAEGSTDFCFL 881
Query: 499 ASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWD 558
ST+A GINL A V++ D WNP + QA+SRA+R+GQK+ V++Y L+T ++E +
Sbjct: 882 LSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQKKQVNIYRLVTKASVEEE 941
Query: 559 KLRRQARKVWWSNMVFPSSDGGG 581
+ R RK+ ++V D G
Sbjct: 942 IVERAKRKLVLDHLVIQRMDTTG 964
>gi|430811700|emb|CCJ30833.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 767
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 144/568 (25%), Positives = 240/568 (42%), Gaps = 87/568 (15%)
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
+V + K + PHQREG +F+++ + + + G G I++ G GK+
Sbjct: 140 VVDPSLSKHLRPHQREGVKFLYECVMKMREFE----------GQGAILADEMGLGKSLQI 189
Query: 121 LVFLQAYMKLHPRC-------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKE 173
+ L +K P R +I+ P +++ W++EF+KW + G E
Sbjct: 190 ITLLWTLLKQSPYYGIKSIIKRALIVCPVTLINNWKKEFRKW-------------IGGNE 236
Query: 174 NNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP 233
G + N VG + V + ++ I D+L +D+
Sbjct: 237 KIGLFVVDSNSNIKNFSVGNVYSVMIIGYERLRNIF-------------DQLEDANIDI- 282
Query: 234 GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQN-NFQELENTLSL-VRQEFGE 291
+ DEGH ++ + + +A+ IKTRRRIILSGTP QN N+ ++S+ + + GE
Sbjct: 283 --IICDEGHRLKSTNK-LAQAIKSIKTRRRIILSGTPIQNGNYYYYYYSISIKLCLDLGE 339
Query: 292 VLRTVR-------KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP----FVNV 340
V ++ K +I S +D EK + E++A FV
Sbjct: 340 FYVMVDFVNPGLLENYATFKKEFENPIIKSRQAGCMKKDKEKGRARSEQLASLTKMFVLR 399
Query: 341 HKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVH-------- 392
+L E LP +V +P Q + + + + S LN + ++VH
Sbjct: 400 RTSEILDEYLPPTVEYIVFCKPTSLQVDIYRELINI-SMSSLNAGNTNIAVHLRALTYLK 458
Query: 393 -----PSLL-----PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL-STNEKVLV 441
P+LL +Q F+ F + + ++G F L L +T+EKV++
Sbjct: 459 KVCNSPTLLFHKKKIEQDFDLFHTNIKHKFSSRCPKDSGKLLVFDKFLEALKATDEKVVI 518
Query: 442 FSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAST 501
S Y + L ++ L + L +DG+ KRQ ++ N S A L S
Sbjct: 519 VSHYTQTLQILENLLISK-----SLSYLRLDGQTANIKRQEYVDKFNSSDSIA--FLLSA 571
Query: 502 KACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561
K+ G+NL+GASR+VL D+ WNP V+ Q ++R R GQ++ VY + S ++ +
Sbjct: 572 KSGGYGLNLIGASRLVLFDIDWNPSVDLQTMARIRRDGQRKRTFVYRFLISGMIDEKIYQ 631
Query: 562 RQARKVWWSNMVFPSSDGGGNDQTTASE 589
RQ K S+ S D T E
Sbjct: 632 RQITKQGLSDTFIDSKMSLIKDSFTQEE 659
>gi|348526954|ref|XP_003450984.1| PREDICTED: DNA repair and recombination protein RAD54B-like
[Oreochromis niloticus]
Length = 1210
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 143/567 (25%), Positives = 228/567 (40%), Gaps = 110/567 (19%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQR+G F+++ + G G G I++ G GKT ++ +K
Sbjct: 609 PHQRDGLLFLYECVMG----------MRAAGCYGAILADEMGLGKTLQSVALSWTLLKQG 658
Query: 132 PRC-RPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRK 185
P RPV ++ P S++ W EF KW G+E + + +
Sbjct: 659 PYGGRPVAKRVLVVTPGSLVQNWAAEFNKW--------------LGRERISVFTVDQDHR 704
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPR 245
+ + + V + S++M R E++ D GL + DEGH +
Sbjct: 705 IEQFVLSPLHSVLVISYEM-------LLRCLEQVQKVDF---------GLIICDEGHRLK 748
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE-IS 304
N + ALS ++ RR+IL+GTP QN+ QE + V RK E I
Sbjct: 749 NSNIKTSSALSSLECNRRVILTGTPVQNDLQEFYAIIEFVNSGILGSSTAYRKVYEEPIL 808
Query: 305 KAKHASLISSIGRCANHR---DDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQ 361
+++ S C +E+ EL F+ ++ LP + +
Sbjct: 809 RSRQPS-------CTEEERVLGEERAAELSRLTGMFILRRTQEIINRYLPPRLDWTLFCE 861
Query: 362 PDEFQKRLCK----------AVEGVKSFVELNYCVSLLSV---HPSL------------- 395
P Q+ L K ++G C++ L HP L
Sbjct: 862 PSSLQRELYKHLLCHRVFRACLQGSTQTHTHLACITALKKLCNHPGLLHITVKRTDAGSV 921
Query: 396 -------LPQQFFESFD------VDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVF 442
L F ES+ DS KL L + L + +LS++++V+V
Sbjct: 922 ESSLYEGLADLFPESYSSGGFTIADSGKLLVL---------SDLLAAIRQLSSSDRVVVV 972
Query: 443 SQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTK 502
S Y + L L+ + H G +DG +RQ ++ N P SQ + L S+K
Sbjct: 973 SNYTQTLDLLQDLCVHM-----GYTFCRLDGNTPTNQRQRLVDSFNSPYSQNFLFLLSSK 1027
Query: 503 ACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRR 562
A G+NL+GAS +VL D+ WNP + QA++R +R GQK+ VH+Y L+T+ T+E +R
Sbjct: 1028 AGGVGLNLIGASHLVLYDIDWNPANDIQAMARVWRDGQKKTVHIYRLLTAGTIEERIFQR 1087
Query: 563 QARKVWWSNMVFPSSDGGGNDQTTASE 589
Q K S V G + + S+
Sbjct: 1088 QVSKQGLSGTVVDMGKGAEHTSFSTSD 1114
>gi|156037672|ref|XP_001586563.1| hypothetical protein SS1G_12550 [Sclerotinia sclerotiorum 1980]
gi|154697958|gb|EDN97696.1| hypothetical protein SS1G_12550 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 938
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 142/546 (26%), Positives = 230/546 (42%), Gaps = 88/546 (16%)
Query: 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP 132
HQ+EG +F+++ + G + G G I++ G GKT T+ L +K +P
Sbjct: 307 HQKEGVKFLYECVMGYRSFN----------GQGAILADEMGLGKTLQTIALLWTLLKQNP 356
Query: 133 RC--------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNR 184
+ +I+ P +++ W+ EF KW G E G V + D
Sbjct: 357 EHPNEGGVIKKALIVCPVTLIANWKAEFNKW--------------LGNERIG-VFVADGS 401
Query: 185 KRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE--LSGILLDLPGLFVFDEGH 242
K R L + S+ + I+G +EKL + E G +D + V DEGH
Sbjct: 402 KNIR----LTDFTHGKSYSV--MIIG-----YEKLRTVQEELKKGGGID---IVVADEGH 447
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+ +A+ + T RR+ILSGTP QN+ E + V T +
Sbjct: 448 RLKTAANKSAQAIRNLNTERRVILSGTPIQNDLSEFFTMVDFVNPGLLNGYNTFK----- 502
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAP----FVNVHKGTVLQESLPGLRHSVV 358
K A ++ S A D EK +E++A F+ ++L + L V+
Sbjct: 503 --KCFEAPILKSRQPGATENDMEKGTAREEELADLTKLFILRRNASILAKYLKPKTEYVL 560
Query: 359 ILQPDEFQKRLCKAVEGVKSF----------VELNYCVSLLSVHPSLLPQQFFESFDVDS 408
+P + Q + + V F ++L + + PSLL ++ +S
Sbjct: 561 FCKPTQAQAEVYQHVLASPVFGRVLGSSEASLQLITMLKKVCNAPSLLVKKSDTDTPSNS 620
Query: 409 AKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEV 468
L+ P +K ++ ++ S Y L L+M L N
Sbjct: 621 NVAQLLESIPPEILKKNIVV---------ASILVSNYTSTLDLLMSHL-SSLNL----PF 666
Query: 469 LYMDGKQDVKKRQSSINVLND-PSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFV 527
L +DG KRQ +N N P+S+ L S K+ GINL+GASR+VL DV WNP
Sbjct: 667 LRLDGSTPQAKRQDLVNTFNKTPASKYFAFLLSAKSGGAGINLIGASRLVLFDVDWNPAT 726
Query: 528 ERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTA 587
+ QA++R +R GQKR V +Y + S ++ +RQ K+ ++ V DG N+ + +
Sbjct: 727 DLQAMARIHRDGQKRSVKIYRFLMSGGMDEKIYQRQVTKIGLADSVM---DGKKNEASFS 783
Query: 588 SEPLED 593
++ L D
Sbjct: 784 ADELRD 789
>gi|444322239|ref|XP_004181775.1| hypothetical protein TBLA_0G03190 [Tetrapisispora blattae CBS 6284]
gi|387514820|emb|CCH62256.1| hypothetical protein TBLA_0G03190 [Tetrapisispora blattae CBS 6284]
Length = 1001
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 151/601 (25%), Positives = 256/601 (42%), Gaps = 99/601 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGN---------------GCIISHAPGTGK 116
PHQ E +F++ I G + +K +S N GC+++ G GK
Sbjct: 321 PHQVEAVKFMYDCIMG-FERKIIKEHSSQISTNHHKPQILNKDSDISGGCLLADEMGLGK 379
Query: 117 TGLTLVFLQAYMKLHP-----RC-----------RPVIIA-PRSMLLTWEEEFKKWGIDI 159
T T+ + +K P C + V+IA P +++ W+ EFKKW
Sbjct: 380 TLSTITLIWTLLKQTPFPWLSPCTQAGVPSQGLLKKVLIACPVTLIQNWKNEFKKW---- 435
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL---- 215
+LN+ G + L N + + + ++++ G +Y +
Sbjct: 436 --LSLNRI--------GILTLNANNTAAKDRTDVRNFLRV----------GRTYHVLIIG 475
Query: 216 FEKLVS-GDELSGILLDLP---GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPF 271
+EKL++ DEL + P L V DEGH +N+++ + L + ++I+L+GTP
Sbjct: 476 YEKLINVADELIDDSNNHPHKIDLLVCDEGHRLKNNNSKILNTLKNLNIEKKILLTGTPI 535
Query: 272 QNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCAN-HRDDEKLKEL 330
QN+ E + + ++ +K R I+ A +S+ G A + + + +EL
Sbjct: 536 QNDLVEFFTIIDFLNPSIFGSFQSFKK--RFITPITRARDMSNSGNFAVIEKGEARSQEL 593
Query: 331 KEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV--EGVKSFVELNYCVSL 388
E F+ +L LP ++ +P + Q + +++ + F N+ SL
Sbjct: 594 IEITQKFILRRTNDILTRYLPPRTDLILFCKPSQSQLGIFRSILTQSSCDFSSANFNSSL 653
Query: 389 --------LSVHPSLLPQQFFESFDVDSAKLARLKLDP------EAGIKTRFLLILLE-- 432
+ PSLL F + + S + A + L+ E+G K R L+ LL+
Sbjct: 654 ELITLLKKVCNSPSLLTSDSFYNSKIKSQQ-ANVSLNSYENKTNESG-KLRVLMELLKKI 711
Query: 433 ---LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND 489
EKV++ S Y + L +I L + +DG K+R + + N
Sbjct: 712 QSVTDGKEKVVIVSNYTQTLDIIQNLLSS-----ASMSFVRLDGSTPSKQRDAIVKEFNK 766
Query: 490 -PSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYH 548
PS A L S K+ G+NL+GASR+VL D WNP ++ QA+SR +R GQK+ ++Y
Sbjct: 767 IPSIFA--FLLSAKSGGVGLNLIGASRLVLFDNDWNPSIDLQAMSRIHRDGQKKPCYIYR 824
Query: 549 LITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSE 608
L+T+ ++ L+RQ K S S D L+ + L N PS
Sbjct: 825 LVTTGCIDEKILQRQLMKNNLSKKFLGDSSKENRDSVKDDLFLKSDLKNLFTVLTNTPSN 884
Query: 609 T 609
T
Sbjct: 885 T 885
>gi|238492801|ref|XP_002377637.1| DNA repair protein Rhp26/Rad26, putative [Aspergillus flavus
NRRL3357]
gi|220696131|gb|EED52473.1| DNA repair protein Rhp26/Rad26, putative [Aspergillus flavus
NRRL3357]
Length = 1076
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 142/546 (26%), Positives = 238/546 (43%), Gaps = 83/546 (15%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P D+ +F +Q+ G +++W+ + G II G GKT +
Sbjct: 287 IPGDIYPLLFDYQKTGVQWLWELQQQQV---------------GGIIGDEMGLGKTIQVI 331
Query: 122 VFLQAYMKLHPRCRPVII-APRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL +PVII P +++ W EF +W P + ++ SG +G V +
Sbjct: 332 SFLAGLHYSKKLTKPVIIVCPATVMKQWVNEFHRW---WPPFRVSILHTSG---SGMVNI 385
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL-----SGILLDLP-- 233
+ R + + + + G L ++ +++V + SG+ P
Sbjct: 386 RNESSREDALLS-----QTWDSRRSLGGLKAGRKVVKRVVEEGHVLVTTYSGLQTYTPLL 440
Query: 234 -----GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-RQ 287
G V DEGH RN +T + ++T RIILSGTP QNN EL + V
Sbjct: 441 IPVEWGCAVLDEGHKIRNPNTSITIHCKELRTPHRIILSGTPMQNNLTELWSLFDFVFPM 500
Query: 288 EFGEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
G ++ + I + +A+ + + +CA + LK+ I+P++
Sbjct: 501 RLGTLVNFRNQFEFPIRQGGYANASNLQVQTAAKCA--------ETLKDAISPYLLQRFK 552
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVEG-------VKSFVELNYCVSLLSVHPSLL 396
+ LP V+ + + Q++ K+ G ++ ++ Y V +L
Sbjct: 553 VDVAADLPKKSEQVLFCKLTKLQRQAYKSFLGSEEMQSILRGRRQVLYGVDIL------- 605
Query: 397 PQQFFESFDVDSAKLARLKL---DPEAGIKTRFLLILLEL--STNEKVLVFSQY---IEP 448
++ D+ S KL K +P+ K + + LLEL T K L+F+Q+ ++
Sbjct: 606 -RKICNHPDLQSHKLTSHKAGYGNPDKSGKMQVVKSLLELWKDTGHKTLLFAQHRIMLDI 664
Query: 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGI 508
L +E L FN+R MDG + RQS ++ N+ + + L +TK G+
Sbjct: 665 LQKFVESLSG-FNYRR------MDGTTPIAHRQSMVDEFNN-NPDLHVFLLTTKVGGLGV 716
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NL GA RV++ D WNP + QA RA+RLGQKR V VY L+T+ T+E RQ K +
Sbjct: 717 NLTGADRVIIYDPDWNPSTDVQARERAWRLGQKRDVTVYRLMTAGTIEEKIYHRQIFKQF 776
Query: 569 WSNMVF 574
+N +
Sbjct: 777 LTNKIL 782
>gi|149035611|gb|EDL90292.1| rCG50332, isoform CRA_c [Rattus norvegicus]
Length = 568
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 128/495 (25%), Positives = 217/495 (43%), Gaps = 69/495 (13%)
Query: 113 GTGKTGLTLVFLQAYMKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKP 167
G GKT + + ++ P C+P V+++P S++ W E +KW
Sbjct: 6 GLGKTLQCITLMWTLLRQSPECKPEIEKAVVVSPSSLVKNWYNEVEKW------------ 53
Query: 168 ELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG 227
L G+ A+ D + L ++ ++ + IL +SY F V +
Sbjct: 54 -LGGRIQPLAI---DGGSKDEIDRKLEGFMNQRGARVPSPILIISYETFRLHVEVLKKGN 109
Query: 228 ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
+ GL + DEGH +N + ++AL + T RR+++SGTP QN+ E SLV
Sbjct: 110 V-----GLVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHF 161
Query: 288 EFGEVLRTVRKSGREISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKG 343
+L T E K ++ S A+ D +E+L+EL + +
Sbjct: 162 VNSGILGT----AHEFKKHFELPILKSRDAAASEADRQLGEERLRELISIVNRCLIRRTS 217
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKA-VEGVKSFVELN------------YCVSLLS 390
+L + LP VV + Q L K + K EL+ + L
Sbjct: 218 DILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPEEELHEGKMSVSSLSSITSLKKLC 277
Query: 391 VHPSLLPQQFFESFDVDSAKLARL-------KLDPEAGIKTRFLLILLELS---TNEKVL 440
HP+L+ + D L ++P+ K L +L ++ +++KV+
Sbjct: 278 NHPALIYDKCVAEEDGFEGTLGIFPPGYNSKAVEPQLSGKMLVLDYILAMTRSRSSDKVV 337
Query: 441 VFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIML 498
+ S Y + L L + R R LY +DG +KKR + N PSS + +
Sbjct: 338 LVSNYTQTLDLFEKLCRAR-------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFM 390
Query: 499 ASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWD 558
S+KA G+NL+GA+R+V+ D WNP + QA++R +R GQK++ ++Y L+++ T+E
Sbjct: 391 LSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKICYIYRLLSAGTIEEK 450
Query: 559 KLRRQARKVWWSNMV 573
+RQ+ K S+ V
Sbjct: 451 IFQRQSHKKALSSCV 465
>gi|83774735|dbj|BAE64858.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 977
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 142/546 (26%), Positives = 238/546 (43%), Gaps = 83/546 (15%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P D+ +F +Q+ G +++W+ + G II G GKT +
Sbjct: 282 IPGDIYPLLFDYQKTGVQWLWELQQQQV---------------GGIIGDEMGLGKTIQVI 326
Query: 122 VFLQAYMKLHPRCRPVII-APRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL +PVII P +++ W EF +W P + ++ SG +G V +
Sbjct: 327 SFLAGLHYSKKLTKPVIIVCPATVMKQWVNEFHRW---WPPFRVSILHTSG---SGMVNI 380
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL-----SGILLDLP-- 233
+ R + + + + G L ++ +++V + SG+ P
Sbjct: 381 RNESSREDALLS-----QTWDSRRSLGGLKAGRKVVKRVVEEGHVLVTTYSGLQTYTPLL 435
Query: 234 -----GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-RQ 287
G V DEGH RN +T + ++T RIILSGTP QNN EL + V
Sbjct: 436 IPVEWGCAVLDEGHKIRNPNTSITIHCKELRTPHRIILSGTPMQNNLTELWSLFDFVFPM 495
Query: 288 EFGEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
G ++ + I + +A+ + + +CA + LK+ I+P++
Sbjct: 496 RLGTLVNFRNQFEFPIRQGGYANASNLQVQTAAKCA--------ETLKDAISPYLLQRFK 547
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVEG-------VKSFVELNYCVSLLSVHPSLL 396
+ LP V+ + + Q++ K+ G ++ ++ Y V +L
Sbjct: 548 IDVAADLPKKSEQVLFCKLTKLQRQAYKSFLGSEEMQSILRGRRQVLYGVDIL------- 600
Query: 397 PQQFFESFDVDSAKLARLKL---DPEAGIKTRFLLILLEL--STNEKVLVFSQY---IEP 448
++ D+ S KL K +P+ K + + LLEL T K L+F+Q+ ++
Sbjct: 601 -RKICNHPDLQSHKLTSHKAGYGNPDKSGKMQVVKSLLELWKDTGHKTLLFAQHRIMLDI 659
Query: 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGI 508
L +E L FN+R MDG + RQS ++ N+ + + L +TK G+
Sbjct: 660 LQKFVESLSG-FNYRR------MDGTTPIAHRQSMVDEFNN-NPDLHVFLLTTKVGGLGV 711
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NL GA RV++ D WNP + QA RA+RLGQKR V VY L+T+ T+E RQ K +
Sbjct: 712 NLTGADRVIIYDPDWNPSTDVQARERAWRLGQKRDVTVYRLMTAGTIEEKIYHRQIFKQF 771
Query: 569 WSNMVF 574
+N +
Sbjct: 772 LTNKIL 777
>gi|380477217|emb|CCF44275.1| SNF2 super family protein [Colletotrichum higginsianum]
Length = 1814
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 136/562 (24%), Positives = 236/562 (41%), Gaps = 104/562 (18%)
Query: 55 QGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGT 114
QG ++ V D+ K++ HQ +G F+W I + + GC+++H G
Sbjct: 889 QGLIY--VNEDIGKRIKNHQIDGVRFMWNQIVYHSKVRQ-----------GCLLAHTMGL 935
Query: 115 GKTGLTLVFLQAYMKLHP---------------RCRPVIIAPRSMLLTWEEEFKKWGIDI 159
GKT + L A + + + +++ P ++ W +E W D
Sbjct: 936 GKTMQVITLLVAIAESAQSQDASIRSQIPEDLRQSKTLVLCPSVLVDNWMDELLMWAPDG 995
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
L K E A+ +RG +IR +W G+L + Y +F++L
Sbjct: 996 LLGRLFKLE----------AITRAPERG----PMIR-----TWDEEGGVLIVGYDMFKRL 1036
Query: 220 VS-----------GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSG 268
+ + IL P L + DE H +N ++ + A ++ +T+ RI L+G
Sbjct: 1037 IDPPTNEFPPPADAKSVKDILTQSPNLVIADEAHKLKNPESKLSMAAAQFRTQSRIALTG 1096
Query: 269 TPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLK 328
+P N+ E + V + L + ++ A L R A + + L
Sbjct: 1097 SPLANSVLEFFYMIDWVAPGYLGPLSEFKAC---YAEPIQAGLYEDSSRSAYRKAKKALA 1153
Query: 329 ELKEKIAPFVN-VHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVEL----- 382
L+ +AP N ++LQ+ LP + V+ + Q +L + EL
Sbjct: 1154 VLEATVAPKTNRATIQSILQDGLPPKKEFVLTVPLTSLQAKLYDSFLESLRKEELGLGGK 1213
Query: 383 ------NYCVSLLSVHPSLLPQQFFESFDV----DSA-------------KLARLKLDPE 419
N+C L++ HP + E + D A K+ +L+ D
Sbjct: 1214 ILGAVSNFC--LIANHPKAFETRLREECKLLQKRDKANLTLTSQIISEGLKITKLQKDMS 1271
Query: 420 AGI---KTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGK 474
+ + K + L+ +L+ S +KVLVF+Q I + + R + +++ +DG
Sbjct: 1272 SHVLSWKVQLLVAILDQSEKVGDKVLVFTQSIPTMDYLDSLFRQ-----QRRKIARLDGN 1326
Query: 475 QDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISR 534
+ RQ +I N+ S + L ST A G+N+ GA+RVV+ D +NP E+QAI R
Sbjct: 1327 TPISIRQQNIKDFNNGDSH--LYLISTAAGGTGLNIYGANRVVIFDFKYNPIHEQQAIGR 1384
Query: 535 AYRLGQKRVVHVYHLITSETLE 556
AYR+GQ++ V+VY I+ T E
Sbjct: 1385 AYRIGQQKQVYVYTFISGGTYE 1406
>gi|341887543|gb|EGT43478.1| hypothetical protein CAEBREN_09271 [Caenorhabditis brenneri]
Length = 1459
Score = 132 bits (331), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 127/503 (25%), Positives = 222/503 (44%), Gaps = 82/503 (16%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN I++ G GKT ++ L + + P +++ P S + W++EF +W D+
Sbjct: 425 GNSSILADEMGLGKTIQSISLLASLFHRYELAGPYLVVVPLSTMAAWQKEFAQWAPDM-- 482
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLY---SWKMGTGILGLSYRLFEK 218
N V + D R +IR + Y + KM + +Y + K
Sbjct: 483 -------------NLVVYMGDVVSRD-----MIRQYEWYVGGTKKMKINAILTTYEILLK 524
Query: 219 LVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
D+ +D L V DE H +ND++ ++K L++ + +++++GTP QN+ +EL
Sbjct: 525 ----DKAFLSSVDWAALLV-DEAHRLKNDESLLYKCLTQFRFNHKLLITGTPLQNSLKEL 579
Query: 279 ENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
L + E + + E +NH+ + L +K+ PF+
Sbjct: 580 WALLHFIMPEKFDCWEEFETAHNE----------------SNHKG---ISALHKKLEPFL 620
Query: 339 NVHKGTVLQESLPGLRHSVVILQPDEFQKR------------LCKAVEG-VKSFVELNYC 385
+++SLP ++ + QK+ L K V+G + FV L
Sbjct: 621 LRRVKKDVEKSLPPKTEQILRVDMTAHQKQFYKWILTKNYRELSKGVKGSINGFVNLVME 680
Query: 386 VSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL------STNEKV 439
+ H SL +Q+ +D +L +L +K+ LILL+ +V
Sbjct: 681 LKKCCNHASLT-RQYDHIYDDAQGRLQQL-------LKSSGKLILLDKLLCRLKDKGHRV 732
Query: 440 LVFSQYIEPLTLIMEQLR-HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498
L+FSQ + L ++ E L+ RF + +DG R+ +++ N P S L
Sbjct: 733 LIFSQMVMMLDILQEYLQLRRFPSQR------LDGSMRADLRKQALDHYNAPGSTDFAFL 786
Query: 499 ASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWD 558
ST+A GINL A V++ D WNP + QA+SRA+R+GQ + V++Y L+T ++E +
Sbjct: 787 LSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQTKTVNIYRLVTKGSVEEE 846
Query: 559 KLRRQARKVWWSNMVFPSSDGGG 581
+ R RK+ ++V D G
Sbjct: 847 IVERAKRKLVLDHLVIQRMDTTG 869
>gi|449550975|gb|EMD41939.1| hypothetical protein CERSUDRAFT_90530 [Ceriporiopsis subvermispora B]
Length = 1923
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 129/497 (25%), Positives = 217/497 (43%), Gaps = 53/497 (10%)
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFY 162
CI++ G GKT F+ M +++ P S + W EF++W +PFY
Sbjct: 932 CILADEMGLGKTVQVATFIGTIMSKWKAFPALVVVPNSTITNWVREFERWAPSLRVVPFY 991
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL----FEK 218
+NR R +I+ +L+ +G G Y + +E
Sbjct: 992 G------------------ENRARE-----VIKNYELFHSNPRSGTTGAKYHVLVTTYEM 1028
Query: 219 LVSGDELSGILLDLPG--LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQ 276
+ + E + + P + V DEG +ND + +FK L + T RII++GTP NN +
Sbjct: 1029 ITNTKEFAPVFKRTPTWEVLVVDEGQRLKNDVSLLFKKLKELNTIHRIIMTGTPINNNIR 1088
Query: 277 ELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP 336
EL N ++ + L+ + ++S+ K L S + R + +L K
Sbjct: 1089 ELFNLMNFLNPREWHDLKALSAEYEDLSEDKIKDLHSRLRPYFLRRIKADVLDLPPKNEV 1148
Query: 337 FVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVK---SFVELNYCVSLLSVHP 393
+ V T LQ + + ++ Q E K L + G + S ++ N L+ +
Sbjct: 1149 ILPVSM-TPLQREI----YRSILSQNLEVLKTLARGSTGGRVNASGLKTNMNNVLMQLR- 1202
Query: 394 SLLPQQFFESFDVDSAKLARLKLDP---EAGIKTRFLLILLE--LSTNEKVLVFSQYIEP 448
L + S D++ L R + +A K R L +LL + +VL+FSQ+
Sbjct: 1203 KCLQHPYLVSDDIEPRGLPREEAHEKLIDASAKLRLLKVLLPKLWARGHRVLLFSQFSIG 1262
Query: 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGI 508
L ++ + L EG + L +DG RQ ++ N P S I L +T+A GI
Sbjct: 1263 LDIVEDFLNG-----EGVKYLRLDGNTKQSLRQKGMDEFNKPGSDIPIYLLTTRAGGVGI 1317
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NL A V++ D +NP + QAI+RA+R GQK+ V V+ L+ E+ E ++ +K+
Sbjct: 1318 NLWSADTVIIFDPDFNPHQDLQAIARAHRFGQKKTVLVFKLMVKESAEERIVQTGKKKLV 1377
Query: 569 WSNMVFPSSDG--GGND 583
+++ D GG D
Sbjct: 1378 LDHLIVQKMDDSEGGED 1394
>gi|334323402|ref|XP_001369227.2| PREDICTED: chromodomain-helicase-DNA-binding protein 3 [Monodelphis
domestica]
Length = 2114
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 136/501 (27%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 905 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 962
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K +R VK + +L S
Sbjct: 963 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMRREAQVKFH-------VLLTS 1012
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 1013 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 1067
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 1068 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 1109
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 1110 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1168
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1169 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1223
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1224 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1278
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1279 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1338
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1339 ASVEERITQVAKRKMMLTHLV 1359
>gi|242795848|ref|XP_002482676.1| DNA repair protein Rhp26/Rad26, putative [Talaromyces stipitatus
ATCC 10500]
gi|218719264|gb|EED18684.1| DNA repair protein Rhp26/Rad26, putative [Talaromyces stipitatus
ATCC 10500]
Length = 1210
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 146/552 (26%), Positives = 232/552 (42%), Gaps = 92/552 (16%)
Query: 62 VPRDVRKKMFPHQREGFEFIW---KNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
VP D+ +F +Q+ G +++W + GGI DE+ G GKT
Sbjct: 414 VPGDIFPVLFDYQKTGVQWLWELYQQQVGGIIGDEM------------------GLGKTI 455
Query: 119 LTLVFLQAYMKLHPRCRPVII-APRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGA 177
+ FL +PVI+ AP +++ W EF +W P + ++ SG +G
Sbjct: 456 QVISFLAGLHHSRLLNKPVIVVAPATVMKQWVTEFHRW---WPPFRVSILHTSG---SGM 509
Query: 178 VALMDNRKRGRGKVGLI-----RYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDL 232
+ + R + Y + K I+ LV+ SG+
Sbjct: 510 INVRSESNRENALTNEMWDPSRPYTMTKAQKTAKKIVQRVVEEGHVLVT--TYSGLQTYA 567
Query: 233 PGLF-------VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
P L + DEGH RN +T + ++T R+ILSGTP QNN EL + V
Sbjct: 568 PVLIPVDWDCAILDEGHKIRNPNTSITIHCKELRTPHRLILSGTPMQNNLSELWSLFDFV 627
Query: 286 -RQEFGEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPFVNV 340
G ++ + I + +A+ + + RCA + LK+ I+P++
Sbjct: 628 FPMRLGTLVDFRNQFEFPIRQGGYANASNLQVQTAARCA--------ETLKDAISPYLLQ 679
Query: 341 HKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN----------YCVSLLS 390
+ LP V+ + Q+ KA E + E N Y V +L
Sbjct: 680 RFKVDVASDLPKKSEQVLFCKLSPLQR---KAYEQFLNSQECNSIFAGRRQVLYGVDMLR 736
Query: 391 V---HPSLLPQQFFESFDV--DSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFS 443
HP L+ + F + D++K ++++ + LLEL T K L+F+
Sbjct: 737 KICNHPDLVTHKLFSTTTGYGDASKSGKMQV----------VKALLELWKDTGHKTLLFA 786
Query: 444 QYIEPLTLIMEQLRHRF-NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTK 502
Q+ IM + +F N G MDG + +RQ ++ N+ S + L +TK
Sbjct: 787 QH-----RIMLNILEKFVNTLSGFNYRRMDGDTPIHRRQLLVDEFNN-SPDIHVFLLTTK 840
Query: 503 ACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRR 562
G+NL GA RV++ D WNP + QA RA+RLGQKR V +Y L+T+ T+E R
Sbjct: 841 VGGLGVNLTGADRVIIYDPDWNPSTDMQARERAWRLGQKREVTIYRLMTAGTIEEKIYHR 900
Query: 563 QARKVWWSNMVF 574
Q K + +N V
Sbjct: 901 QIFKQFLTNKVL 912
>gi|451845347|gb|EMD58660.1| hypothetical protein COCSADRAFT_264941 [Cochliobolus sativus
ND90Pr]
Length = 889
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 146/558 (26%), Positives = 240/558 (43%), Gaps = 86/558 (15%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQREG +F+++ + G G G I++ G GKT T+ L
Sbjct: 248 KHLRDHQREGVQFLYECVMG-----------MRCEGEGAIMADEMGLGKTLQTITLLWTL 296
Query: 128 MKLHPRC-------RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
MK +P + +I+ P ++ W+ EF+KW G E G V +
Sbjct: 297 MKQNPIHDSPPLIKKALIVCPAGLVDNWKREFRKW--------------LGNERVG-VFV 341
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTG--ILGLSYRLFEKLVSGDELSGILLDLPGLFVF 238
+D + + K+ ++ MG I+ + Y + ++V + G +D + +
Sbjct: 342 LDAKNK-----------KIANFTMGKSYNIMIVGYEML-RIVQEELKKGSGVD---IVIA 386
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGEVLRTVR 297
DEGH + A+ + T RRIILSGTP QN+ E + V G+ R+
Sbjct: 387 DEGHRLKTASNKAMLAIQSLNTERRIILSGTPLQNDLGEFYTAIDFVNPGLLGQ--RSAF 444
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
K E+ + +S + + + KEL + F+ VL + LP +
Sbjct: 445 KRSFELPIMRSRQPDASEAEL--EKGEARWKELVSLTSQFMIRRTAEVLSKYLPPKTEHI 502
Query: 358 VILQPDEFQKRLCKAVEGVKSFV----ELNYCVSLLSV------HPSLLPQQFFESFDVD 407
V +P + Q +A+ G +F + + L++V PSLL + ++ D
Sbjct: 503 VFCRPTKGQAETYRAILGSPTFRLALGSTDIALQLINVLKKVCNSPSLL-KSSKDNDDTP 561
Query: 408 SAKLAR-LKLDP-------EAGIKTRFLLILLE---LSTNEKVLVFSQYIEPLTLIMEQL 456
S L + L P + K R L L+ +T EK+++ S Y L +I E+L
Sbjct: 562 SEMLQSIIPLIPSKILSSSASSAKLRLLDSLIHSIYTTTEEKIVIVSNYTTTLDMI-ERL 620
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLND-PSSQARIMLASTKACCEGINLVGASR 515
++ L +DG KRQS + N P + + L S K+ G+NL+GASR
Sbjct: 621 LVSLSY----TFLRLDGSTPASKRQSLVEKFNKTPKTTSFAFLLSAKSGGVGLNLIGASR 676
Query: 516 VVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFP 575
+VL D+ WNP + QA++R +R GQK VY + L+ +RQ K+ +N V
Sbjct: 677 IVLFDIDWNPATDLQAMARIHRDGQKLPCKVYRFLVQGGLDEKIYQRQVMKMGLANAVV- 735
Query: 576 SSDGGGNDQTTASEPLED 593
D + + + E L D
Sbjct: 736 --DNKASASSFSQEELRD 751
>gi|390355905|ref|XP_003728651.1| PREDICTED: chromodomain-helicase-DNA-binding protein 2 isoform 1
[Strongylocentrotus purpuratus]
Length = 1865
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 141/554 (25%), Positives = 235/554 (42%), Gaps = 98/554 (17%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFY 162
N I++ G GKT + FL +H P +I+ P S + +W+ EF+ W +
Sbjct: 562 NSVILADEMGLGKTIQVISFLSYLFNVHQLYGPFLIVVPLSTMTSWQREFEAWDSKM--- 618
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW-------KMGTGILGLSYRL 215
N V + G + ++ Y W K+ + +Y +
Sbjct: 619 ------------NVVVYI--------GDINSRNSIREYEWCVHGNRNKLKLNAILTTYEI 658
Query: 216 FEKLVSGDELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNN 274
K L +P + V DE H +NDD+ ++K+L +T R++++GTP QN+
Sbjct: 659 LLKD------KAFLGAVPWAVLVVDEAHRLKNDDSLLYKSLKEFETNHRLLITGTPLQNS 712
Query: 275 FQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKI 334
+EL + L + E + + K +ASL +++
Sbjct: 713 LKELWSLLHFIMPERFPTWEIFEEEFSQADKNGYASL-------------------HQEL 753
Query: 335 APFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEG-VKSFV- 380
PF+ +++SLP LR + LQ ++ K LCK ++G SF+
Sbjct: 754 EPFLLRRVKKDVEKSLPAKVERILRVEMSSLQKQYYKFILTRNFKALCKGLKGNTSSFIN 813
Query: 381 ---ELNYCV--SLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
EL C SLL P + S KL L + L L E
Sbjct: 814 IMMELKKCCNHSLLIRPPEDESDPDLKYIIRGSGKLVLL---------DKLLTRLQE--R 862
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
+VL+FSQ + L ++ E L++R + +DG + R+ +++ N SQ
Sbjct: 863 GHRVLIFSQMVRMLDILSEYLQYRHFQHQ-----RLDGSIRGEIRKQALDHFNAEGSQDF 917
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
L ST+A G+NL A V++ D WNP + QA++RA+R+GQ+R V++Y L+T +T+
Sbjct: 918 CFLLSTRAGGLGLNLASADTVIIFDSDWNPQNDIQAMARAHRIGQRRQVNIYRLVTKDTI 977
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGGND--QTTASEPLEDKIL--EEMAQLYNNPSETLI 611
E + + R RK+ ++V D G ++S+ D EE+ + +E L
Sbjct: 978 EEEIIERAKRKMVLDHLVIQRMDTTGRTVLSKSSSQASRDAPFSKEELTAILKFRAEELF 1037
Query: 612 NAIIPQPKETELIE 625
P +ETEL E
Sbjct: 1038 KE--PDGEETELPE 1049
>gi|310793157|gb|EFQ28618.1| SNF2 family domain-containing protein [Glomerella graminicola M1.001]
Length = 1813
Score = 131 bits (330), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 139/561 (24%), Positives = 235/561 (41%), Gaps = 103/561 (18%)
Query: 55 QGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGT 114
QG V+ V + K++ HQ G F+W I +D +++ GC+++H G
Sbjct: 890 QGLVY--VNEHIGKQIKSHQINGVRFMWNQI---VDDSKVRQ--------GCLLAHTMGL 936
Query: 115 GKTGLTLVFLQAYMKLHP---------------RCRPVIIAPRSMLLTWEEEFKKWGIDI 159
GKT + L A + + + +++ P ++ W +E W D
Sbjct: 937 GKTMQVITLLVAIAESAQSEDESIRSQIPEELRQSKTLVLCPSVLVDNWMDELLMWAPDG 996
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
L K E A+ +RG ++R W G+L + Y +F++L
Sbjct: 997 LLGRLFKLE----------AITKAPERG----PMVR-----RWDEEGGVLIIGYDMFKRL 1037
Query: 220 VS--GDELSG---------ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSG 268
V +EL IL P L V DE H +N ++ + A ++ +T+ RI L+G
Sbjct: 1038 VDSPANELPSPHDAKSVKEILTQSPSLVVADEAHKMKNPNSKLATATAQFRTQSRIALTG 1097
Query: 269 TPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLK 328
+P N+ E + V + L +++ ++ H L + A + ++L
Sbjct: 1098 SPLANSVLEFYYMIDWVAPGY---LGPIQEFSSLYAQPIHLGLYEDSPKSAYRKAMKQLA 1154
Query: 329 ELKEKIAPFVNVHKGTV---LQESLPG-----LRHSVVILQP---DEFQKRLCKAVEGVK 377
L+ + P H+ T+ L++ LP L V +Q D F + L K G
Sbjct: 1155 VLEATVQP--KTHRATIKSCLKDDLPPKMEFVLTVPVTPIQAKLYDTFLESLRKEERGGG 1212
Query: 378 SFVELNYCVSLLSVHPSLLPQQFFESFDV-----------------DSAKLARLKLD--- 417
+ L++ HP + E D K+ L+ D
Sbjct: 1213 KILGAVNSFCLIANHPKTFQTRLREERHALGKRDKSNLTLTSQIISDGLKITGLEKDISS 1272
Query: 418 PEAGIKTRFLLILL--ELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
P K R L+ +L S +KVL+F+Q I + + R ++ ++V +DG
Sbjct: 1273 PALSWKVRLLVAILNESESVGDKVLIFTQSIPTMDYLDSLFR-----QQKRKVARLDGNT 1327
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
+ +RQ +I N S ++ + ST A G+N+ GA+RVV+ D +NP E+QAI RA
Sbjct: 1328 PISQRQQNIKDFN--SGDTQLYIISTAAGGTGLNIFGANRVVIFDFKYNPIHEQQAIGRA 1385
Query: 536 YRLGQKRVVHVYHLITSETLE 556
YR+GQ++ V+VY I T E
Sbjct: 1386 YRIGQQKPVYVYTFICGGTYE 1406
>gi|148227774|ref|NP_001080504.1| chromodomain helicase DNA binding protein 4 [Xenopus laevis]
gi|28422180|gb|AAH46866.1| B230399n07 protein [Xenopus laevis]
Length = 1893
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 143/524 (27%), Positives = 233/524 (44%), Gaps = 86/524 (16%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 717 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 761
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV------ALMD 182
+ H + ++ AP S ++ WE EF+ W D+ G +++ AV +
Sbjct: 762 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY-----VGDKDSRAVIRENEFSFEG 816
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
N RG K R K S K +L SY +L++ D +D L V DE H
Sbjct: 817 NAIRGGKKAS--RMKKEASVKFH--VLLTSY----ELITIDTAVLGSIDWACLVV-DEAH 867
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L + +
Sbjct: 868 RLKNNQSKFFRVLNGYPLQHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFAD 927
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQP 362
I+K ++++K+L + + P + + +++P +V ++
Sbjct: 928 IAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVEL 969
Query: 363 DEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDS 408
QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 970 SPMQKKYYKFI-LTRNFEALNTRGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA----- 1023
Query: 409 AKLARLKLDPEAGIKTRFLLILLEL------STNEKVLVFSQYIEPLTLIMEQLRHRFNW 462
K+ D A IK L LL+ +VL+FSQ + L L+ + + H
Sbjct: 1024 PKMPNGMYDGSALIKGAGKLFLLQKMLRKLKDDGHRVLIFSQMTKMLDLLEDFMEH---- 1079
Query: 463 REGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVV 522
EG + +DG RQ +I+ N P +Q L ST+A GINL A VV+ D
Sbjct: 1080 -EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVVIYDSD 1138
Query: 523 WNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ R V +Y +T ++E +++ + A+K
Sbjct: 1139 WNPHNDIQAFSRAHRIGQNRKVMIYRFVTRASVE-ERITQVAKK 1181
>gi|330936688|ref|XP_003305493.1| hypothetical protein PTT_18347 [Pyrenophora teres f. teres 0-1]
gi|311317475|gb|EFQ86421.1| hypothetical protein PTT_18347 [Pyrenophora teres f. teres 0-1]
Length = 890
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 148/562 (26%), Positives = 237/562 (42%), Gaps = 94/562 (16%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQR+G +F+++ + G G G I++ G GKT T+ L
Sbjct: 245 KHLREHQRDGVQFLYECVMG-----------MRCEGEGAIMADEMGLGKTLQTIALLWTL 293
Query: 128 MKLHP--RCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
MK +P PVI + P ++ W+ EFKKW G E G V +
Sbjct: 294 MKQNPIHGASPVIKKALIVCPAGLVDNWKREFKKW--------------LGNERIG-VYV 338
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTG--ILGLSYRLF----EKLVSGDELSGILLDLPG 234
+D + + K+ ++ MG IL + Y + E+L G SG+
Sbjct: 339 LDAKNK-----------KIANFTMGKSYNILIVGYEMLRVYQEELKKG---SGV-----D 379
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVL 293
+ + DEGH + + A+ + T RRIILSGTP QN+ E + V G+
Sbjct: 380 IVIADEGHRLKTANNKAMLAIQSLNTERRIILSGTPLQNDLGEFYTAIDFVNPGLLGQRA 439
Query: 294 RTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGL 353
R I +++ S + + + KEL + F+ VL + LP
Sbjct: 440 AFKRTFEAPIIRSRQPDASES----ELEKGEARWKELVSLTSRFMIRRTAEVLSKYLPPK 495
Query: 354 RHSVVILQPDEFQKRLCKAVEGVKSF----------VELNYCVSLLSVHPSLLPQQFFES 403
+V +P + Q +A+ +F ++L + + PSLL + ++
Sbjct: 496 TEHIVFCRPTKGQAEAYRAILDSPTFRLAMGSSDIALQLINVLKKICNSPSLL-KSSKDN 554
Query: 404 FDVDSAKLAR-LKLDPE-------AGIKTRFLLILLE---LSTNEKVLVFSQYIEPLTLI 452
D S L L L P + K R L L+ +T EK+++ S Y L +I
Sbjct: 555 DDTPSEMLQSILPLIPNNILNSSASSAKLRLLDSLVHRIYTTTEEKIVIVSNYTTTLDMI 614
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND-PSSQARIMLASTKACCEGINLV 511
E+L ++ L +DG KRQ+ + N P + + L S K+ G+NL+
Sbjct: 615 -ERLLVSLSY----TYLRLDGSTPASKRQALVEKFNKTPKTTSFAFLLSAKSGGVGLNLI 669
Query: 512 GASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSN 571
GASR+VL D+ WNP + QA++R +R GQK VY + L+ +RQ K+ +N
Sbjct: 670 GASRIVLFDIDWNPATDLQAMARIHRDGQKLPCKVYRFLVQGGLDEKIYQRQIMKMGLAN 729
Query: 572 MVFPSSDGGGNDQTTASEPLED 593
V D + + + E L D
Sbjct: 730 AVV---DNKASASSFSQEELRD 748
>gi|195496271|ref|XP_002095622.1| GE19602 [Drosophila yakuba]
gi|194181723|gb|EDW95334.1| GE19602 [Drosophila yakuba]
Length = 899
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 140/552 (25%), Positives = 242/552 (43%), Gaps = 98/552 (17%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM 128
K+ P Q EG ++ N GI I++ G GKT T+VFL +
Sbjct: 267 KLHPFQMEGVSWLRYNWGQGI---------------PTILADEMGLGKTIQTVVFLYSLF 311
Query: 129 KLHPRCR-PVIIA-PRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
K CR P +I+ P S + WE E + W PE G
Sbjct: 312 K-EGHCRGPFLISVPLSTVANWERELELWA----------PEFYCITYVG---------- 350
Query: 187 GRGKVGLIRYVKLYSWKMGTGIL---GLSYRLFEKLVSGDELSGILLDLPG-----LFVF 238
G+ +IR +L ++ T + Y+ F +++ EL + + G + V
Sbjct: 351 GKTSRAVIRKNELSCKEVTTKTMRAKQTEYK-FNVMLTSYELISLDVAFLGSIDWAVLVV 409
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK 298
DE H +N+ + F+ L++ + +++L+GTP QNN +EL L+ + + + L+T +
Sbjct: 410 DEAHRLKNNQSKFFRMLNKYRIVYKLLLTGTPLQNNLEELFYLLNFLSSDKFDDLQTFQA 469
Query: 299 SGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
+++K +E++K L E +AP + + +++P +V
Sbjct: 470 KFADVAK------------------EEQVKRLHEILAPHMLRRLKADVLKNMPSKAEFIV 511
Query: 359 ILQPDEFQKRLCKAVEGVKSFVELN-----YCVSLLSV---------HPSLLPQQFFES- 403
++ QK+ K + K+F LN SLL++ HP L E+
Sbjct: 512 RVELSSMQKKFYKLI-LTKNFKALNKNGGGRVCSLLNIMMDLRKCCNHPYLFSSAAEEAT 570
Query: 404 ------FDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLR 457
++++S A KLD + ++ L L + + +VL+FSQ + L ++ + L
Sbjct: 571 ILPSGLYEINSLIKASGKLD----LLSKMLKQLK--ADHHRVLIFSQMTKMLNILEDFLE 624
Query: 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
EG + +DG RQ +I+ N P ++ + L ST+A GINL A V+
Sbjct: 625 G-----EGYQYERLDGNIRGDLRQEAIDRFNAPKAEQFVFLLSTRAGGLGINLATADTVI 679
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSS 577
L D WNP + QA SRA+R+GQ + V +Y +T ++E ++ K+ +++V
Sbjct: 680 LFDSDWNPHNDVQAFSRAHRMGQTKKVMIYRFVTHNSVEERIMQVVKHKMMLTHLVVRPG 739
Query: 578 DGGGNDQTTASE 589
GG N+ T E
Sbjct: 740 MGGNNNNFTKDE 751
>gi|67541879|ref|XP_664707.1| hypothetical protein AN7103.2 [Aspergillus nidulans FGSC A4]
gi|40742118|gb|EAA61308.1| hypothetical protein AN7103.2 [Aspergillus nidulans FGSC A4]
gi|259483574|tpe|CBF79076.1| TPA: DNA repair protein Rhp26/Rad26, putative (AFU_orthologue;
AFUA_4G03840) [Aspergillus nidulans FGSC A4]
Length = 1193
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 144/553 (26%), Positives = 243/553 (43%), Gaps = 97/553 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIW---KNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
+P D+ +F +Q+ G +++W + GGI DE+ G GKT
Sbjct: 390 IPGDIHPLLFDYQKTGVQWMWELHQQQVGGIIGDEM------------------GLGKTI 431
Query: 119 LTLVFLQAYMKLHPRCRPVIIA-PRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGA 177
+ FL +P+I+ P +++ W EF +W P + ++ SG
Sbjct: 432 QAIAFLAGLHYSKRLTKPIIVVCPATVMKQWVNEFHRW---WPPFRVSILHTSG------ 482
Query: 178 VALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV----------SGDELSG 227
+ M N K + + Y +S +G L + ++ +++V SG +
Sbjct: 483 -SGMVNIKSESSREDALMYGTYWSGGSSSG-LKAARKVVKRVVEEGHVLVTTYSGLQSYA 540
Query: 228 ILLDLP---GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
LL +P G + DEGH RN +T + ++T RIILSGTP QNN EL +
Sbjct: 541 SLL-IPVEWGGTILDEGHKIRNPNTSITMHAKELRTPHRIILSGTPMQNNLTELWSLFDF 599
Query: 285 V-RQEFGEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPFVN 339
V G ++ + I + +A+ + + +CA + LK+ I+P++
Sbjct: 600 VFPMRLGTLVNFRNQFEFPIRQGGYANASNLQVQTAAKCA--------ETLKDAISPYLL 651
Query: 340 VHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEG-------VKSFVELNYCVSLLSV- 391
+ LP V+ + + Q++ +A G ++ ++ Y V +L
Sbjct: 652 QRFKIDVAADLPKKSEQVLFCRLTKPQRQAYEAFLGSEEMQSILRGRRQVLYGVDILRKI 711
Query: 392 --HPSLLPQQFFESFDVDSAKLARLKL---DPEAGIKTRFLLILLEL--STNEKVLVFSQ 444
HP D+ + KL K +P K + + LLEL T K L+F+Q
Sbjct: 712 CNHP-----------DLQNHKLLYAKPNYGNPTKSGKMQVVRSLLELWKETGHKTLLFAQ 760
Query: 445 YIEPLTLIMEQLR--HRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLAST 501
+ L ++ + ++ FN+R MDG ++ RQ+ ++ N DP + L +T
Sbjct: 761 HRIMLDILEKFVKSLSGFNYRR------MDGTTPIQHRQTMVDEFNKDPD--LHVFLLTT 812
Query: 502 KACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561
K G+NL GA RV++ D WNP + QA RA+RLGQKR V +Y L+T+ T+E
Sbjct: 813 KVGGLGVNLTGADRVIIYDPDWNPSTDVQARERAWRLGQKRDVTIYRLMTAGTIEEKIYH 872
Query: 562 RQARKVWWSNMVF 574
RQ K + +N +
Sbjct: 873 RQIFKQFLTNKIL 885
>gi|414084089|ref|YP_006992797.1| SNF2 family domain-containing protein [Carnobacterium
maltaromaticum LMA28]
gi|412997673|emb|CCO11482.1| SNF2 family N-terminal domain protein [Carnobacterium
maltaromaticum LMA28]
Length = 856
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 135/536 (25%), Positives = 235/536 (43%), Gaps = 89/536 (16%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
VP+++ ++ P+Q GF+ W + G G I++ G GKT +
Sbjct: 393 VPKNLEAELRPYQITGFK--WLKMLAKY-------------GFGGILADDMGLGKTIQVI 437
Query: 122 VFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
F+ + ++ + + P +I++P S+ W E KK+ P L +G
Sbjct: 438 TFILSEIEDYGKNEPFLIVSPASLTYNWHHEIKKFA----------PSLESFVVSGTA-- 485
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
+ R++ +VG IL SY F + V + V DE
Sbjct: 486 -EERQKRIEEVG------------PNQILITSYPSFRQDVEFYKKKKF-----STLVLDE 527
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +AL + R+R LSGTP +N +EL L+ F ++ +
Sbjct: 528 SQMVKNYHTKTAQALRELTIRKRFALSGTPIENKIEELWAIFQLIMPGFFPPMKQFKTMP 587
Query: 301 R-EISKAKHASLISSIGRCANHRDDEKLKELKEKIA----PFVNVHKGTVLQESLPGLRH 355
+I++ ++ I + + LKEL +KI + + TV L ++
Sbjct: 588 YPQIARMIQPFVLRRIKK-------DVLKELPDKIETDLYSSMTKEQKTVYLAYLQRIQD 640
Query: 356 SVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLK 415
SV + D+F++ + + G+ ++ C P+ F +++ DS KL +LK
Sbjct: 641 SVRSMSGDDFKRNRIEILAGLTRLRQI--CCD---------PRLFVDNYTGDSGKLEQLK 689
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
L+ ++VL+FSQ+ L++I E+L +EG E Y+ G+
Sbjct: 690 E-----------LLQTAKENGQRVLLFSQFTSMLSIIEEELA-----QEGIETFYLSGQT 733
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
K+R ++ N + + + L S KA G+NL GA V+L D+ WNP VE QA RA
Sbjct: 734 KPKERIEMVDRFN--AGEKEVFLISLKAGGTGLNLTGADTVILYDLWWNPAVEEQAAGRA 791
Query: 536 YRLGQKRVVHVYHLITSETLE--WDKLRRQARKVWWSNMVFPSSDGGGNDQTTASE 589
+RLGQK+VV V+ LI T+E +L+++ + ++ + ++D Q T S+
Sbjct: 792 HRLGQKKVVQVWRLIAEGTIEEKISQLQQEKKALFDQVITSEATDTKQLTQLTESD 847
>gi|254829448|ref|ZP_05234135.1| helicase [Listeria monocytogenes FSL N3-165]
gi|258601864|gb|EEW15189.1| helicase [Listeria monocytogenes FSL N3-165]
Length = 1072
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 140/501 (27%), Positives = 214/501 (42%), Gaps = 88/501 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ ++ +Q GFE W +L G I++ G GKT T+
Sbjct: 608 LPKGLKAELRDYQLTGFE--WMKSLAKYNL-------------GGILADDMGLGKTVQTI 652
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + ++ +P +PV II P S+L W+ E +K+ IP L+ + S +A
Sbjct: 653 SFLASELEDNPNLKPVLIITPASLLYNWQSELEKFAPAIPVTVLHGTKQS------RMAE 706
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
M+ K G V LI Y L I+ + F + + DE
Sbjct: 707 MEEMKHGH--VYLISYPSLRQ-----DIVHFADVAFSSV-----------------IIDE 742
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +A+ +K LSGTP +N+ EL + F LR
Sbjct: 743 SQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKF---- 798
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+EI A +I + +KEL +KI T L L + ++ +
Sbjct: 799 KEIPYDNIAKMIRPF--LLRRLKQDVVKELPDKIE--------TNLYSELTDEQKTIYLA 848
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVSL-----LSVHPSLLPQQFFESFDVDSAKLARLK 415
++ Q L +A G + L + PSL F E++ +S KL +L
Sbjct: 849 YLEKIQADL-EASNGNAGEERIKLLAGLTRLRQICCDPSL----FVENYQGESGKLLQL- 902
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
F I +++L+FSQ+ L +I ++L +GQ + YMDGK
Sbjct: 903 ----------FDTIQTARENGKRILLFSQFTGMLGIIRQKLEE-----DGQTLFYMDGKT 947
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
K R +N N+ + I L S KA G+NLVGA V+L D+ WNP VE QA RA
Sbjct: 948 PSKTRLDMVNAFNE--GENDIFLISLKAGGTGLNLVGADTVILYDLWWNPAVEEQATGRA 1005
Query: 536 YRLGQKRVVHVYHLITSETLE 556
+R+GQKRVV V+ +IT T+E
Sbjct: 1006 HRIGQKRVVQVFRMITKGTIE 1026
>gi|281343214|gb|EFB18798.1| hypothetical protein PANDA_010098 [Ailuropoda melanoleuca]
Length = 1318
Score = 131 bits (330), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 133/496 (26%), Positives = 222/496 (44%), Gaps = 66/496 (13%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 71 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 128
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 129 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 178
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 179 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 233
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 234 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 275
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 276 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 334
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL-STNE 437
LL++ HP L P ES + S L +G IL +L
Sbjct: 335 LLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKASGKLMLLQKILRKLKEQGH 394
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +Q
Sbjct: 395 RVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGAQQFCF 449
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T ++E
Sbjct: 450 LLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEE 509
Query: 558 DKLRRQARKVWWSNMV 573
+ RK+ +++V
Sbjct: 510 RITQVAKRKMMLTHLV 525
>gi|420263181|ref|ZP_14765820.1| Snf2 family protein [Enterococcus sp. C1]
gi|394769815|gb|EJF49649.1| Snf2 family protein [Enterococcus sp. C1]
Length = 1054
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 120/473 (25%), Positives = 209/473 (44%), Gaps = 79/473 (16%)
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNL 164
G I++ G GKT T+ +L + + H + +I+AP S+ W++E K++
Sbjct: 623 GGILADEMGLGKTVQTISYLLSEKQEHQKLNALIVAPASLTFNWQQEIKRFA-------- 674
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
P +S +G + R+ + +R S + +Y+ E
Sbjct: 675 --PSISATVISGT---KEEREAQMAQSADVRITSYASLRQDID----AYQALE------- 718
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
LS ++LD E +N T +AL ++ +R LSGTP +NN +EL + +
Sbjct: 719 LSCLILD--------EAQMVKNSATKTAQALRSLEVPQRFALSGTPIENNLEELWSLFQM 770
Query: 285 V-------RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPF 337
+ +Q+F E+ S +EI+K ++ + H +KL+
Sbjct: 771 IMPGFFPNKQKFKEL------STQEIAKMIKPFILRRDKKSVLHDLPQKLET---NYYSV 821
Query: 338 VNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLP 397
+ + + L +R + + F+K + G+ ++ C P
Sbjct: 822 LTEEQKKIYLAYLRQMREEIAQMDSTSFRKNRISILAGLTRLRQI--CCD---------P 870
Query: 398 QQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLR 457
+ F E ++ S KL ++K L+L +VL+FSQ+ L++I E+L
Sbjct: 871 RLFVEDYEGSSGKLEQVKD-----------LLLAAKENGRRVLLFSQFTSMLSIIEEELA 919
Query: 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
+EG E Y+ G + R + +N N S + + L S KA G+NL GA V+
Sbjct: 920 -----QEGFESFYLRGSTPPQDRLTMVNAFN--SGEKDVFLISLKAGGTGLNLTGADTVI 972
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
L D+ WNP VE QA RA+R+GQK VV V+ +I T+E D L+++ R+++
Sbjct: 973 LYDLWWNPAVEEQAAGRAHRIGQKNVVEVWRMIAEGTIEERMDALQQEKRELF 1025
>gi|326481938|gb|EGE05948.1| dsDNA-dependent ATPase [Trichophyton equinum CBS 127.97]
Length = 1004
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 143/549 (26%), Positives = 225/549 (40%), Gaps = 89/549 (16%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQREG +F+++ + G + G G I++ G GKT T+ +
Sbjct: 250 KHLREHQREGVKFLYECVMGLRPFN----------GEGAILADEMGLGKTLQTIALIWTL 299
Query: 128 MKLHP--RCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P +PVI + P +++ W++EFKKW G + G
Sbjct: 300 LKQNPIYGSQPVIKKALIVCPVTLINNWKKEFKKW--------------LGSDRIGVFV- 344
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTG----ILGLSYRLFEKLVSGDELSGILLDLPG-- 234
G+G +L + MG I+G +E+L S + L PG
Sbjct: 345 ----AEGKGN-------RLSDFTMGRSYSVMIIG-----YERLRS---VQDQLTKGPGID 385
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294
+ V DEGH + +A+ + T RRIILSGTP QN E + V L
Sbjct: 386 IVVADEGHRLKTVQNKSAQAIQSLNTTRRIILSGTPIQNELSEFFAMVDFVNPAL---LG 442
Query: 295 TVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLR 354
T + RE + + + + + +EL E +PF+ +L + LP
Sbjct: 443 TFKSFMREFEGPIVGARQPNAPKKVIEKGKARSEELAELTSPFILRRTADILSKHLPPKT 502
Query: 355 HSVVILQPDEFQKRLCKAV----------EGVKSFVELNYCVSLLSVHPSLLPQQFFESF 404
++ P Q+ + V +S ++L + + PSLL + ++
Sbjct: 503 EYILFCNPTSAQRNVYHHVLASPLFQSVLRNSESTLQLITILKKVCNSPSLLKPKVEDNG 562
Query: 405 DVDSAKLARL--KLDPE------AGIKTRF-----LLILLELSTNEKVLVFSQYIEPLTL 451
+ + ++ L P AG + LL L+ T EKV++ S Y
Sbjct: 563 KGEDSSMSAFISSLPPNIHRCLAAGSSGKIRVLDQLLYNLQSKTTEKVVLVSNYTS---- 618
Query: 452 IMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGINL 510
L L +DG KRQ+ + N PSS L S KA G+NL
Sbjct: 619 -TLNLLANLLTSLDLPFLRLDGSTPATKRQALVEDFNRSPSSSCFAFLLSAKAGGTGLNL 677
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS 570
+GASR+VL DV WNP + QA++R +R GQKR H+Y L+ +E +RQ K+ +
Sbjct: 678 IGASRLVLFDVDWNPATDIQAMARIHRDGQKRHCHIYRLLLKGGIEEKIWQRQVTKLGLA 737
Query: 571 NMVFPSSDG 579
+ V G
Sbjct: 738 DSVMDQKGG 746
>gi|301771598|ref|XP_002921219.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3-like,
partial [Ailuropoda melanoleuca]
Length = 1363
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 133/496 (26%), Positives = 222/496 (44%), Gaps = 66/496 (13%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 114 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 171
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 172 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 221
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 222 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 276
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 277 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 318
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 319 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 377
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL-STNE 437
LL++ HP L P ES + S L +G IL +L
Sbjct: 378 LLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKASGKLMLLQKILRKLKEQGH 437
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +Q
Sbjct: 438 RVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGAQQFCF 492
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T ++E
Sbjct: 493 LLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEE 552
Query: 558 DKLRRQARKVWWSNMV 573
+ RK+ +++V
Sbjct: 553 RITQVAKRKMMLTHLV 568
>gi|392531178|ref|ZP_10278315.1| putative ATP-binding SNF2 helicase or protein kinase [Carnobacterium
maltaromaticum ATCC 35586]
Length = 1075
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 136/536 (25%), Positives = 238/536 (44%), Gaps = 89/536 (16%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
VP+++ ++ P+Q GF+++ K +A G G I++ G GKT +
Sbjct: 612 VPKNLEAELRPYQITGFKWL-KMLAKY--------------GFGGILADDMGLGKTIQVI 656
Query: 122 VFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
F+ + ++ + + P +I++P S+ W E KK+ P L +G
Sbjct: 657 TFILSEIEDYGKNEPFLIVSPASLTYNWHHEIKKFA----------PSLESFVVSGTA-- 704
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
+ R++ +VG IL SY F + V + V DE
Sbjct: 705 -EERQKRIEEVG------------PNQILITSYPSFRQDVEFYKKKKF-----STLVLDE 746
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +AL + R+R LSGTP +N +EL L+ F ++ +
Sbjct: 747 SQMVKNYHTKTAQALRELTIRKRFALSGTPIENKIEELWAIFQLIMPGFFPPMKQFKTMP 806
Query: 301 R-EISKAKHASLISSIGRCANHRDDEKLKELKEKIA----PFVNVHKGTVLQESLPGLRH 355
+I++ ++ I + + LKEL +KI + + TV L ++
Sbjct: 807 YPQIARMIQPFVLRRIKK-------DVLKELPDKIETDLYSSMTKEQKTVYLAYLQRIQD 859
Query: 356 SVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLK 415
SV + D+F++ + + G+ ++ C P+ F +++ DS KL +LK
Sbjct: 860 SVRSMSGDDFKRNRIEILAGLTRLRQI--CCD---------PRLFVDNYTGDSGKLEQLK 908
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
L+ ++VL+FSQ+ L++I E+L +EG E Y+ G+
Sbjct: 909 E-----------LLQTAKENGQRVLLFSQFTSMLSIIEEELA-----QEGIETFYLSGQT 952
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
K+R ++ N + + + L S KA G+NL GA V+L D+ WNP VE QA RA
Sbjct: 953 KPKERIEMVDRFN--AGEKEVFLISLKAGGTGLNLTGADTVILYDLWWNPAVEEQAAGRA 1010
Query: 536 YRLGQKRVVHVYHLITSETLE--WDKLRRQARKVWWSNMVFPSSDGGGNDQTTASE 589
+RLGQK+VV V+ LI T+E +L+++ + ++ + ++D Q T S+
Sbjct: 1011 HRLGQKKVVQVWRLIAEGTIEEKISQLQQEKKALFDQVITSEATDTKQLTQLTESD 1066
>gi|195116617|ref|XP_002002850.1| GI10771 [Drosophila mojavensis]
gi|193913425|gb|EDW12292.1| GI10771 [Drosophila mojavensis]
Length = 1908
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 129/502 (25%), Positives = 223/502 (44%), Gaps = 80/502 (15%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVI-IAPRSMLLTWEEEFKKWGIDIPFY 162
N I++ G GKT T+ FL + K+H P + + P S + W+ EF W D+
Sbjct: 560 NSVILADEMGLGKTIQTICFLYSLFKIHHLYGPFLCVVPLSTMTAWQREFDLWAPDM--- 616
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKM-GTGILGLSYRL--FEKL 219
N L D + R ++ Y W+ G+ L + L +E +
Sbjct: 617 ------------NVVTYLGDVKSR--------ELIQQYEWQFEGSKRLKFNCILTTYEIV 656
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ + G L L V DE H +NDD+ ++K+L T R++++GTP QN+ +EL
Sbjct: 657 LKDKQFLGTL-QWAALLV-DEAHRLKNDDSLLYKSLKEFDTNHRLLITGTPLQNSLKELW 714
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVN 339
L + E + E + +H + +D+ L +++ P++
Sbjct: 715 ALLHFIMPEKFDTW--------ENFELQHGNA-----------EDKGYTRLHQQLEPYIL 755
Query: 340 VHKGTVLQESLPG-----LRHSVVILQPDEFQKRLCKAVEGVKS------------FVEL 382
+++SLP LR + LQ ++ L K + ++ +EL
Sbjct: 756 RRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNFDALRKGKRGSTSTFLNIVIEL 815
Query: 383 NYCVSLLSVHPSLLPQQFFESFDV--DSAKLARLKLDPEAGIKTRFLLILLELSTNEKVL 440
C + H +L+ FE F + D A LK + + + L L E T +VL
Sbjct: 816 KKCCN----HAALIRPSEFELFGLQQDEALQVLLKGSGKLVLLDKLLCRLKE--TGHRVL 869
Query: 441 VFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
+FSQ + L ++ + L+ R F+++ +DG + R+ +++ N SQ L
Sbjct: 870 IFSQMVRMLDVLADYLQKRHFSFQR------LDGSIKGEMRRQALDHFNAEGSQDFCFLL 923
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
ST+A GINL A V++ D WNP + QA +RA+R+GQK V++Y L+T+ ++E
Sbjct: 924 STRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQI 983
Query: 560 LRRQARKVWWSNMVFPSSDGGG 581
+ R +K+ ++V D G
Sbjct: 984 VERAKQKMVLDHLVIQRMDTTG 1005
>gi|148678548|gb|EDL10495.1| mCG140617 [Mus musculus]
Length = 1826
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 576 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 633
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 634 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 683
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 684 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 738
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 739 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 780
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 781 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 839
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 840 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLLLLQKMLRKL 894
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 895 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 949
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 950 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1009
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1010 ASVEERITQVAKRKMMLTHLV 1030
>gi|397477893|ref|XP_003810301.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein 3 [Pan paniscus]
Length = 2011
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 754 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 811
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 812 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 861
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 862 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 916
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 917 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 958
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 959 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1017
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1018 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1072
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1073 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1127
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1128 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1187
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1188 ASVEERITQVAKRKMMLTHLV 1208
>gi|325570841|ref|ZP_08146524.1| Snf2 family protein [Enterococcus casseliflavus ATCC 12755]
gi|325156351|gb|EGC68533.1| Snf2 family protein [Enterococcus casseliflavus ATCC 12755]
Length = 1054
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 120/473 (25%), Positives = 209/473 (44%), Gaps = 79/473 (16%)
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNL 164
G I++ G GKT T+ +L + + H + +I+AP S+ W++E K++
Sbjct: 623 GGILADEMGLGKTVQTISYLLSEKQEHQKLNALIVAPASLTFNWQQEIKRFA-------- 674
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
P +S +G + R+ + +R S + +Y+ E
Sbjct: 675 --PSISATVISGT---KEEREAQMAQSADVRITSYASLRQDID----AYQALE------- 718
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
LS ++LD E +N T +AL ++ +R LSGTP +NN +EL + +
Sbjct: 719 LSCLILD--------EAQMVKNSATKTAQALRSLEVPQRFALSGTPIENNLEELWSLFQM 770
Query: 285 V-------RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPF 337
+ +Q+F E+ S +EI+K ++ + H +KL+
Sbjct: 771 IMPGFFPNKQKFKEL------STQEIAKMIKPFILRRDKKSVLHDLPQKLET---NYYSV 821
Query: 338 VNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLP 397
+ + + L +R + + F+K + G+ ++ C P
Sbjct: 822 LTEEQKKIYLAYLRQMREEIAQMDSTSFRKNRISILAGLTRLRQI--CCD---------P 870
Query: 398 QQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLR 457
+ F E ++ S KL ++K L+L +VL+FSQ+ L++I E+L
Sbjct: 871 RLFVEDYEGSSGKLEQVKD-----------LLLAAKENGRRVLLFSQFTSMLSIIEEELA 919
Query: 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
+EG E Y+ G + R + +N N S + + L S KA G+NL GA V+
Sbjct: 920 -----QEGFESFYLRGSTPPQDRLTMVNAFN--SGEKDVFLISLKAGGTGLNLTGADTVI 972
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
L D+ WNP VE QA RA+R+GQK VV V+ +I T+E D L+++ R+++
Sbjct: 973 LYDLWWNPAVEEQAAGRAHRIGQKNVVEVWRMIAEGTIEERMDALQQEKRELF 1025
>gi|145482121|ref|XP_001427083.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124394162|emb|CAK59685.1| unnamed protein product [Paramecium tetraurelia]
Length = 761
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 133/509 (26%), Positives = 229/509 (44%), Gaps = 69/509 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K++ HQ EG F+ + + G K S GCI++ + G GKT + +
Sbjct: 147 KQLRAHQIEGVRFMLECVTG-------KKGKSI---RGCILADSMGLGKTLQAITLMWIL 196
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG 187
++ H + VI P S++ WE+E KKW + L A+ D +
Sbjct: 197 IQSHEISKIVITCPVSLIGNWEKEIKKWLGPMRLQPL-----------SAIGTKDEVNKQ 245
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND 247
++Y LYS +L SY F + +E+ ++ L + DEGH +N
Sbjct: 246 ------VKYF-LYS---PYNLLLTSYETFRNIC--NEIDKVI----DLLICDEGHRLKNS 289
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR---KSGREIS 304
+ +A++++K +RRI+LSGTP QNN +E V +T + + E+S
Sbjct: 290 NIKTVQAMNQLKCKRRIVLSGTPIQNNMKEFYACCDFVNPGIFSSYKTFKLVFQDPIEMS 349
Query: 305 KAKHASLIS-SIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPD 363
K +S + +G+ + EL + F+ K +L + LP ++
Sbjct: 350 MEKGSSAETVELGKLRSQ-------ELSSLTSQFILRRKPEILSKFLPSKFEYLIFCTMT 402
Query: 364 EFQKRLCKAVEGV---KSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEA 420
Q+ L K + ++LN + ++ HP L+ D +S +L +
Sbjct: 403 PQQQVLYKRSLQLCPNSVMMQLNL-LRKVTTHPKLIE-------DDESQAAEKLVVQDYQ 454
Query: 421 GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRF-NWREGQEVLYMDGKQDV 477
+K L IL++ NEKV++ S Y + L +Q+ H W + L +DGK
Sbjct: 455 SVKFNCLKILVDQCKEQNEKVVINSYYRQTL----DQIEHNLIQW--NLKFLRLDGKVVQ 508
Query: 478 KKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYR 537
K+R + ++ N + L + K+ G+NLVGA++++ ++V WNP + Q + R +R
Sbjct: 509 KQRLTLVDEFN-KDKDITVFLLNGKSGGTGLNLVGANKMICVEVDWNPANDSQVMGRIWR 567
Query: 538 LGQKRVVHVYHLITSETLEWDKLRRQARK 566
GQ++ VH+Y LIT T E ++RQ K
Sbjct: 568 DGQQKQVHIYRLITCGTYEEKIMQRQLTK 596
>gi|395836470|ref|XP_003791177.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3 isoform 2
[Otolemur garnettii]
Length = 1964
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 224/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 751 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 808
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 809 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 858
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 859 YELI--TIDQAALGSICW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 913
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 914 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 955
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 956 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1014
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK L+LL+
Sbjct: 1015 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKASGKLMLLQKMLRKL 1069
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1070 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1124
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1125 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1184
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1185 ASVEERITQVAKRKMMLTHLV 1205
>gi|392351358|ref|XP_220602.6| PREDICTED: chromodomain-helicase-DNA-binding protein 3 [Rattus
norvegicus]
Length = 2069
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 820 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 877
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 878 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 927
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 928 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 982
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 983 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 1024
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 1025 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1083
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1084 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLLLLQKMLRKL 1138
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1139 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1193
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1194 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1253
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1254 ASVEERITQVAKRKMMLTHLV 1274
>gi|62530236|gb|AAX85375.1| chromodomain helicase DNA-binding protein 3 short isoform [Rattus
norvegicus]
gi|62530238|gb|AAX85376.1| chromodomain helicase DNA-binding protein 3 short isoform [Rattus
norvegicus]
Length = 1925
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 710 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 767
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 768 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 817
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 818 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 872
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 873 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 914
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 915 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 973
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 974 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLLLLQKMLRKL 1028
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1029 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1083
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1084 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1143
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1144 ASVEERITQVAKRKMMLTHLV 1164
>gi|383415425|gb|AFH30926.1| chromodomain-helicase-DNA-binding protein 3 isoform 1 [Macaca
mulatta]
Length = 1996
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 750 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 807
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 808 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 857
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 858 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 912
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 913 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 954
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 955 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1013
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1014 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1068
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1069 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1123
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1124 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1183
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1184 ASVEERITQVAKRKMMLTHLV 1204
>gi|301776989|ref|XP_002923917.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5-like
[Ailuropoda melanoleuca]
Length = 1948
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 149/568 (26%), Positives = 253/568 (44%), Gaps = 81/568 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 698 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 742
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 743 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 801
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 802 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 851
Query: 246 NDD-TCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREIS 304
N+ F+ L+ K +++L+GTP QNN +EL + L+ + E L + +IS
Sbjct: 852 NNQPKSFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADIS 911
Query: 305 KAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDE 364
K ++++K+L + + P + + +++P +V ++ +
Sbjct: 912 K------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQ 953
Query: 365 FQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAK 410
QK+ K + ++F LN VSLL++ HP L P V++
Sbjct: 954 MQKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPV 1007
Query: 411 LARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWRE 464
L D + +K+ L+LL+ +VL+FSQ + L L+ + L + E
Sbjct: 1008 LPNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----E 1062
Query: 465 GQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWN 524
G + +DG RQ +I+ N P +Q L ST+A GINL A V++ D WN
Sbjct: 1063 GYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWN 1122
Query: 525 PFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQ 584
P + QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1123 PHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGS 1182
Query: 585 TTASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1183 MTKQE-LDDILKFGTEELFKDDVEGMMS 1209
>gi|62530244|gb|AAX85379.1| chromodomain helicase DNA-binding protein 3 long isoform [Rattus
norvegicus]
gi|62530246|gb|AAX85380.1| chromodomain helicase DNA-binding protein 3 long isoform [Rattus
norvegicus]
gi|62530248|gb|AAX85381.1| chromodomain helicase DNA-binding protein 3 long isoform [Rattus
norvegicus]
gi|62530250|gb|AAX85382.1| chromodomain helicase DNA-binding protein 3 long isoform [Rattus
norvegicus]
Length = 1959
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 710 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 767
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 768 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 817
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 818 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 872
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 873 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 914
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 915 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 973
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 974 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLLLLQKMLRKL 1028
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1029 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1083
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1084 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1143
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1144 ASVEERITQVAKRKMMLTHLV 1164
>gi|432105627|gb|ELK31821.1| Chromodomain-helicase-DNA-binding protein 3 [Myotis davidii]
Length = 1998
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 752 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 809
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 810 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 859
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 860 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 914
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 915 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 956
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 957 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1015
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1016 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1070
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1071 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1125
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1126 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1185
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1186 ASVEERITQVAKRKMMLTHLV 1206
>gi|62530242|gb|AAX85378.1| chromodomain helicase DNA-binding protein 3 short isoform [Rattus
norvegicus]
Length = 1927
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 712 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 769
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 770 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 819
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 820 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 874
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 875 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 916
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 917 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 975
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 976 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLLLLQKMLRKL 1030
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1031 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1085
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1086 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1145
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1146 ASVEERITQVAKRKMMLTHLV 1166
>gi|291405109|ref|XP_002719030.1| PREDICTED: chromodomain helicase DNA binding protein 3-like
[Oryctolagus cuniculus]
Length = 1910
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 749 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 806
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 807 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 856
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 857 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 911
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 912 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 953
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 954 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1012
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1013 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1067
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1068 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1122
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1123 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1182
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1183 ASVEERITQVAKRKMMLTHLV 1203
>gi|357527416|ref|NP_666131.3| chromodomain helicase DNA binding protein 3 [Mus musculus]
Length = 2055
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 806 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 863
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 864 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 913
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 914 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 968
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 969 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 1010
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 1011 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1069
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1070 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLLLLQKMLRKL 1124
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1125 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1179
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1180 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1239
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1240 ASVEERITQVAKRKMMLTHLV 1260
>gi|391873750|gb|EIT82758.1| transcription-coupled repair protein CSB/RAD26 [Aspergillus oryzae
3.042]
Length = 1196
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 142/546 (26%), Positives = 238/546 (43%), Gaps = 83/546 (15%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P D+ +F +Q+ G +++W+ + G II G GKT +
Sbjct: 395 IPGDIYPLLFDYQKTGVQWLWELQQQQV---------------GGIIGDEMGLGKTIQVI 439
Query: 122 VFLQAYMKLHPRCRPVII-APRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL +PVII P +++ W EF +W P + ++ SG +G V +
Sbjct: 440 SFLAGLHYSKKLTKPVIIVCPATVMKQWVNEFHRW---WPPFRVSILHTSG---SGMVNI 493
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL-----SGILLDLP-- 233
+ R + + + + G L ++ +++V + SG+ P
Sbjct: 494 RNESSREDALLS-----QTWDSRRSLGGLKAGRKVVKRVVEEGHVLVTTYSGLQTYTPLL 548
Query: 234 -----GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-RQ 287
G V DEGH RN +T + ++T RIILSGTP QNN EL + V
Sbjct: 549 IPVEWGCAVLDEGHKIRNPNTSITIHCKELRTPHRIILSGTPMQNNLTELWSLFDFVFPM 608
Query: 288 EFGEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
G ++ + I + +A+ + + +CA + LK+ I+P++
Sbjct: 609 RLGTLVNFRNQFEFPIRQGGYANASNLQVQTAAKCA--------ETLKDAISPYLLQRFK 660
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVEG-------VKSFVELNYCVSLLSVHPSLL 396
+ LP V+ + + Q++ K+ G ++ ++ Y V +L
Sbjct: 661 IDVAADLPKKSEQVLFCKLTKLQRQAYKSFLGSEEMQSILRGRRQVLYGVDIL------- 713
Query: 397 PQQFFESFDVDSAKLARLKL---DPEAGIKTRFLLILLEL--STNEKVLVFSQY---IEP 448
++ D+ S KL K +P+ K + + LLEL T K L+F+Q+ ++
Sbjct: 714 -RKICNHPDLQSHKLTSHKAGYGNPDKSGKMQVVKSLLELWKDTGHKTLLFAQHRIMLDI 772
Query: 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGI 508
L +E L FN+R MDG + RQS ++ N+ + + L +TK G+
Sbjct: 773 LQKFVESLSG-FNYRR------MDGTTPIAHRQSMVDEFNN-NPDLHVFLLTTKVGGLGV 824
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NL GA RV++ D WNP + QA RA+RLGQKR V VY L+T+ T+E RQ K +
Sbjct: 825 NLTGADRVIIYDPDWNPSTDVQARERAWRLGQKRDVTVYRLMTAGTIEEKIYHRQIFKQF 884
Query: 569 WSNMVF 574
+N +
Sbjct: 885 LTNKIL 890
>gi|317156769|ref|XP_001825991.2| DNA repair protein Rhp26/Rad26 [Aspergillus oryzae RIB40]
Length = 1192
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 142/546 (26%), Positives = 238/546 (43%), Gaps = 83/546 (15%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P D+ +F +Q+ G +++W+ + G II G GKT +
Sbjct: 391 IPGDIYPLLFDYQKTGVQWLWELQQQQV---------------GGIIGDEMGLGKTIQVI 435
Query: 122 VFLQAYMKLHPRCRPVII-APRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL +PVII P +++ W EF +W P + ++ SG +G V +
Sbjct: 436 SFLAGLHYSKKLTKPVIIVCPATVMKQWVNEFHRW---WPPFRVSILHTSG---SGMVNI 489
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL-----SGILLDLP-- 233
+ R + + + + G L ++ +++V + SG+ P
Sbjct: 490 RNESSREDALLS-----QTWDSRRSLGGLKAGRKVVKRVVEEGHVLVTTYSGLQTYTPLL 544
Query: 234 -----GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-RQ 287
G V DEGH RN +T + ++T RIILSGTP QNN EL + V
Sbjct: 545 IPVEWGCAVLDEGHKIRNPNTSITIHCKELRTPHRIILSGTPMQNNLTELWSLFDFVFPM 604
Query: 288 EFGEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
G ++ + I + +A+ + + +CA + LK+ I+P++
Sbjct: 605 RLGTLVNFRNQFEFPIRQGGYANASNLQVQTAAKCA--------ETLKDAISPYLLQRFK 656
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVEG-------VKSFVELNYCVSLLSVHPSLL 396
+ LP V+ + + Q++ K+ G ++ ++ Y V +L
Sbjct: 657 IDVAADLPKKSEQVLFCKLTKLQRQAYKSFLGSEEMQSILRGRRQVLYGVDIL------- 709
Query: 397 PQQFFESFDVDSAKLARLKL---DPEAGIKTRFLLILLEL--STNEKVLVFSQY---IEP 448
++ D+ S KL K +P+ K + + LLEL T K L+F+Q+ ++
Sbjct: 710 -RKICNHPDLQSHKLTSHKAGYGNPDKSGKMQVVKSLLELWKDTGHKTLLFAQHRIMLDI 768
Query: 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGI 508
L +E L FN+R MDG + RQS ++ N+ + + L +TK G+
Sbjct: 769 LQKFVESLSG-FNYRR------MDGTTPIAHRQSMVDEFNN-NPDLHVFLLTTKVGGLGV 820
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NL GA RV++ D WNP + QA RA+RLGQKR V VY L+T+ T+E RQ K +
Sbjct: 821 NLTGADRVIIYDPDWNPSTDVQARERAWRLGQKRDVTVYRLMTAGTIEEKIYHRQIFKQF 880
Query: 569 WSNMVF 574
+N +
Sbjct: 881 LTNKIL 886
>gi|2645433|gb|AAB87383.1| CHD3 [Homo sapiens]
Length = 1944
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 754 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 811
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 812 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 861
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 862 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 916
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 917 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 958
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 959 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1017
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1018 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1072
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1073 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1127
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1128 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1187
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1188 ASVEERITQVAKRKMMLTHLV 1208
>gi|149053041|gb|EDM04858.1| chromodomain helicase DNA binding protein 3 [Rattus norvegicus]
Length = 1827
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 577 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 634
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 635 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 684
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 685 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 739
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 740 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 781
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 782 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 840
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 841 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLLLLQKMLRKL 895
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 896 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 950
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 951 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1010
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1011 ASVEERITQVAKRKMMLTHLV 1031
>gi|355568209|gb|EHH24490.1| hypothetical protein EGK_08151 [Macaca mulatta]
Length = 1931
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 684 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 741
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 742 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 791
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 792 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 846
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 847 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 888
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 889 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 947
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 948 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1002
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1003 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1057
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1058 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1117
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1118 ASVEERITQVAKRKMMLTHLV 1138
>gi|258563128|ref|XP_002582309.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237907816|gb|EEP82217.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 939
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 145/540 (26%), Positives = 227/540 (42%), Gaps = 97/540 (17%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQREG +F+++ + G + G G +++ G GKT T+ L
Sbjct: 307 KHLREHQREGVKFLYECVMGMRPFN----------GEGAVLADEMGLGKTLQTIALLWTL 356
Query: 128 MKLHP--RCRPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
MK +P PV I+ P +++ W++EFKKW
Sbjct: 357 MKQNPIHEAPPVVKKALIVCPVTLIKNWQKEFKKW------------------------- 391
Query: 181 MDNRKRGRGKVGLI----RYVKLYSWKMGTGILGLSYRL----FEKLVSGDE--LSGILL 230
G ++G+ ++++L + MG +SY + +E+L + E G +
Sbjct: 392 -----LGNDRLGVFVADGKHMRLTDFTMG-----MSYNVMIIGYERLRTVQEELTKGRGI 441
Query: 231 DLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFG 290
D+ + DEGH + +A+ + T RRIILSGTP QN+ E + V
Sbjct: 442 DI---VIADEGHRLKTVQNKSAQAIQSLNTARRIILSGTPIQNDLSEFFAMVDFVNPG-- 496
Query: 291 EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP----FVNVHKGTVL 346
+L T + +E ++ S A+ ++ EK K E++A F+ +L
Sbjct: 497 -LLGTFKMFMKEF----EGPIVKSRQPGASRKEIEKGKARSEELASLTSLFILRRTADIL 551
Query: 347 QESLPGLRHSVVILQPDEFQKRLCKAVEGVKSF------VELNYCVSLLSVHPSLLPQQF 400
+ LP ++ P Q + + V F E S +S S LP
Sbjct: 552 LKHLPPKTEYILFCNPTPAQANIYRHVLASPIFQSALGNSETENSNSTISSLLSTLPPNL 611
Query: 401 FESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
F S+ R+ LD LL L +T+EKV++ S Y L L+ L
Sbjct: 612 LRHFSPASSGKIRV-LDQ--------LLHNLRSTTSEKVVLVSNYTSTLNLLAALLT--- 659
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI-MLASTKACCEGINLVGASRVVLL 519
L +DG KRQ ++ N SS + L S KA G+NL GASR+VL
Sbjct: 660 --SLALPFLRLDGSTPANKRQYLVDDFNRSSSSSCFAFLLSAKAGGIGLNLTGASRLVLF 717
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDG 579
DV WNP + QA++R +R GQKR H+Y ++ LE +RQ K+ ++ V G
Sbjct: 718 DVDWNPATDIQAMARIHRDGQKRHCHIYRMLLRGGLEEKIWQRQVTKIGLADSVMDQKGG 777
>gi|332847230|ref|XP_512012.3| PREDICTED: chromodomain-helicase-DNA-binding protein 3 isoform 3 [Pan
troglodytes]
Length = 2058
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 812 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 869
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 870 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 919
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 920 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 974
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 975 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 1016
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 1017 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1075
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1076 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1130
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1131 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1185
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1186 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1245
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1246 ASVEERITQVAKRKMMLTHLV 1266
>gi|62530240|gb|AAX85377.1| chromodomain helicase DNA-binding protein 3 short isoform [Rattus
norvegicus]
Length = 1924
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 709 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 766
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 767 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 816
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 817 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 871
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 872 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 913
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 914 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 972
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 973 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLLLLQKMLRKL 1027
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1028 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1082
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1083 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1142
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1143 ASVEERITQVAKRKMMLTHLV 1163
>gi|403274994|ref|XP_003929245.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3 isoform 1
[Saimiri boliviensis boliviensis]
Length = 2000
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 754 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 811
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 812 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 861
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 862 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 916
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 917 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 958
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 959 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1017
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1018 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1072
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1073 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1127
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1128 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1187
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1188 ASVEERITQVAKRKMMLTHLV 1208
>gi|402898650|ref|XP_003912333.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3 isoform 1
[Papio anubis]
Length = 2000
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 754 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 811
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 812 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 861
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 862 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 916
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 917 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 958
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 959 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1017
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1018 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1072
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1073 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1127
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1128 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1187
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1188 ASVEERITQVAKRKMMLTHLV 1208
>gi|344290176|ref|XP_003416814.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3 [Loxodonta
africana]
Length = 1863
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 136/505 (26%), Positives = 225/505 (44%), Gaps = 76/505 (15%)
Query: 99 STGGGNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGI 157
S G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W
Sbjct: 656 SWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAP 715
Query: 158 DIPFYNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGI 208
FY + +G +++ A+ + DN +G K ++ VK + +
Sbjct: 716 K--FYVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------V 763
Query: 209 LGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSG 268
L SY L + L I V DE H +N+ + F+ L+ K +++L+G
Sbjct: 764 LLTSYELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTG 818
Query: 269 TPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLK 328
TP QNN +EL + L+ + E L + +ISK ++++K
Sbjct: 819 TPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIK 860
Query: 329 ELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY---- 384
+L + + P + + +++P +V ++ QK+ K + ++F LN
Sbjct: 861 KLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGG 919
Query: 385 -CVSLLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL- 433
VSLL++ HP L P ES KL + A IK L+LL+
Sbjct: 920 NQVSLLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKASGKLMLLQKM 974
Query: 434 -----STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN 488
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N
Sbjct: 975 LRKLKEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFN 1029
Query: 489 DPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYH 548
P +Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y
Sbjct: 1030 APGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYR 1089
Query: 549 LITSETLEWDKLRRQARKVWWSNMV 573
+T ++E + RK+ +++V
Sbjct: 1090 FVTRASVEERITQVAKRKMMLTHLV 1114
>gi|395836468|ref|XP_003791176.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3 isoform 1
[Otolemur garnettii]
Length = 1998
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 224/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 751 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 808
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 809 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 858
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 859 YELI--TIDQAALGSICW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 913
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 914 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 955
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 956 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1014
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK L+LL+
Sbjct: 1015 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKASGKLMLLQKMLRKL 1069
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1070 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1124
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1125 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1184
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1185 ASVEERITQVAKRKMMLTHLV 1205
>gi|426384011|ref|XP_004058570.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3 isoform 1
[Gorilla gorilla gorilla]
Length = 2000
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 754 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 811
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 812 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 861
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 862 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 916
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 917 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 958
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 959 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1017
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1018 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1072
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1073 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1127
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1128 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1187
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1188 ASVEERITQVAKRKMMLTHLV 1208
>gi|402898652|ref|XP_003912334.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3 isoform 2
[Papio anubis]
Length = 1966
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 754 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 811
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 812 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 861
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 862 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 916
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 917 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 958
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 959 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1017
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1018 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1072
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1073 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1127
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1128 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1187
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1188 ASVEERITQVAKRKMMLTHLV 1208
>gi|209882027|ref|XP_002142451.1| SNF2/RAD54 helicase family protein [Cryptosporidium muris RN66]
gi|209558057|gb|EEA08102.1| SNF2/RAD54 helicase family protein [Cryptosporidium muris RN66]
Length = 1877
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 144/509 (28%), Positives = 222/509 (43%), Gaps = 61/509 (11%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFL-QAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID-- 158
G NG I++ G GKT T+ F+ K R +I+AP S L W+ F+ W D
Sbjct: 1024 GRNG-ILADEMGLGKTMQTMSFIWHLVYKEKYRGPFLIVAPLSTLDHWKRTFEDW-TDLN 1081
Query: 159 -IPFYNLN----KPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSY 213
+ +Y+ + L E D R RGR IR +S+ ++ +
Sbjct: 1082 VVSYYDEGGRNGRDLLRHYEWYHQCLQFDMRGRGRNNYNSIRSSYGHSYLNEPRLVHTQH 1141
Query: 214 RLFEKLVSGDEL----SGILLDLPGLFV-FDEGHTPRNDDTCMFKALSRIKTRRRIILSG 268
F L++ E+ + IL +P FV DE H +N + I R ++LSG
Sbjct: 1142 YKFHILLTSYEILLADADILCIMPWQFVVIDEAHRLKNRGAKTLQVFKSIACRHILLLSG 1201
Query: 269 TPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLK 328
TP QNN +EL L+ I K AS+ + + + ++
Sbjct: 1202 TPVQNNTEELWPLLNY------------------IEPIKFASIETFTQEFGDLQSSAQVS 1243
Query: 329 ELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV-EGVKSFVELNYCV- 386
L E + P + + + +P L +++ ++ QK +A+ E ++F+ N V
Sbjct: 1244 ALHELLRPHLLRRVKEDVMKEIPPLEETIIDVELTTAQKAYYRAIFERNRAFLCKNVTVG 1303
Query: 387 ----------SLLSVHPSL--LPQQFFESFDVDSAKLARLKLDPEAGIKTRFL---LILL 431
SL++V L F+ V+ ++A + E K L ++L+
Sbjct: 1304 GKKVGVGNIPSLMNVEVELRKCCNHPFQVVGVEEREVALCRTSEERYRKMVELSGKMVLM 1363
Query: 432 EL------STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSIN 485
E + KVLVFSQ+I+ LTL+ E + H W G E L DG R ++I
Sbjct: 1364 EKLLPKLKAEGHKVLVFSQFIQTLTLLEELVEHH-KW--GYERL--DGSIRGSDRSAAIT 1418
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
N S I L ST+A GINL A V++ D WNP + QA +RA+R+GQ R V
Sbjct: 1419 RFNADESDKFIFLLSTRAGGLGINLTSADTVIIFDSDWNPQNDVQACARAHRIGQTRDVK 1478
Query: 546 VYHLITSETLEWDKLRRQARKVWWSNMVF 574
VY LIT+ T E + R +RK+ + VF
Sbjct: 1479 VYRLITARTYEAEMFERASRKLGLNTAVF 1507
>gi|426384013|ref|XP_004058571.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3 isoform 2
[Gorilla gorilla gorilla]
Length = 1966
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 754 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 811
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 812 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 861
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 862 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 916
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 917 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 958
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 959 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1017
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1018 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1072
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1073 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1127
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1128 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1187
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1188 ASVEERITQVAKRKMMLTHLV 1208
>gi|162318864|gb|AAI56473.1| Chromodomain helicase DNA binding protein 3 [synthetic construct]
Length = 2045
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 799 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 856
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 857 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 906
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 907 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 961
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 962 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 1003
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 1004 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1062
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1063 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1117
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1118 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1172
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1173 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1232
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1233 ASVEERITQVAKRKMMLTHLV 1253
>gi|341891282|gb|EGT47217.1| CBN-LET-418 protein [Caenorhabditis brenneri]
Length = 1835
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 137/518 (26%), Positives = 228/518 (44%), Gaps = 70/518 (13%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT +L FL MK H + +I AP S ++ WE E ++W D F
Sbjct: 621 GTDAILADEMGLGKTVQSLTFLYTLMKEGHCKGPFLIAAPLSTIINWEREAEQWCPD--F 678
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL 215
Y + G ++ V + ++ R K G ++ + M +L SY
Sbjct: 679 YVVT---YVGDRDSRVVLREHEFSFVEGAVRSGPKAGKMKTTE----NMKFHVLLTSYET 731
Query: 216 --FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQN 273
+K + LS I G V DE H +N+ + FK L+ R++L+GTP QN
Sbjct: 732 INMDKTI----LSSIEW---GALVVDEAHRLKNNQSLFFKNLNEYTIHYRVLLTGTPLQN 784
Query: 274 NFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEK 333
N +EL + L+ + E L EISK ++++++L
Sbjct: 785 NLEELFHLLNFLSAERFNQLEAFTAEFSEISK------------------EDQIEKLHNL 826
Query: 334 IAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVSL 388
+ P + + +P +V ++ QK+ K + ++F LN +SL
Sbjct: 827 LGPHMLRRLKADVLTGMPSKSELIVRVELSPMQKKWYKNI-LTRNFDALNVKNGGTQMSL 885
Query: 389 LSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----ST 435
++V HP L + E+ + L AG +F+L+ L
Sbjct: 886 MNVLMELKKCCNHPYLFAKASLEAPKEKNGMYEGTALIKNAG---KFVLLQKMLRKLKEQ 942
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
+VL+FSQ +T++M+ + F EG + +DG + RQ +I+ N P +Q
Sbjct: 943 GHRVLIFSQ----MTMMMD-IMEDFCDVEGYKYERIDGSITGQMRQDAIDRYNAPGAQQF 997
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
+ L ST+A GINL A V++ D WNP + QA SRA+RLGQK V +Y +T ++
Sbjct: 998 VFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSV 1057
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLED 593
E +K+ +++V + GG ++ + L+D
Sbjct: 1058 EERITSVAKKKMLLNHLVVRAGLGGKEGKSMSKSELDD 1095
>gi|332847232|ref|XP_003339343.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3 [Pan
troglodytes]
Length = 2000
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 754 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 811
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 812 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 861
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 862 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 916
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 917 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 958
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 959 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1017
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1018 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1072
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1073 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1127
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1128 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1187
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1188 ASVEERITQVAKRKMMLTHLV 1208
>gi|392332091|ref|XP_001079343.3| PREDICTED: chromodomain-helicase-DNA-binding protein 3 [Rattus
norvegicus]
Length = 2080
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 831 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 888
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 889 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 938
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 939 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 993
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 994 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 1035
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 1036 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1094
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1095 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLLLLQKMLRKL 1149
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1150 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1204
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1205 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1264
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1265 ASVEERITQVAKRKMMLTHLV 1285
>gi|158420731|ref|NP_001005271.2| chromodomain-helicase-DNA-binding protein 3 isoform 3 [Homo sapiens]
Length = 2059
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 813 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 870
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 871 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 920
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 921 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 975
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 976 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 1017
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 1018 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1076
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1077 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1131
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1132 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1186
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1187 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1246
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1247 ASVEERITQVAKRKMMLTHLV 1267
>gi|3298562|gb|AAC39923.1| zinc-finger helicase [Homo sapiens]
Length = 2000
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 754 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 811
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 812 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 861
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 862 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 916
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 917 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 958
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 959 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1017
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1018 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1072
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1073 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1127
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1128 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1187
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1188 ASVEERITQVAKRKMMLTHLV 1208
>gi|403274996|ref|XP_003929246.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3 isoform 2
[Saimiri boliviensis boliviensis]
Length = 1966
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 754 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 811
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 812 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 861
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 862 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 916
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 917 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 958
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 959 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1017
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1018 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1072
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1073 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1127
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1128 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1187
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1188 ASVEERITQVAKRKMMLTHLV 1208
>gi|67467805|ref|XP_649984.1| chromodomain-helicase-DNA-binding protein [Entamoeba histolytica
HM-1:IMSS]
gi|56466523|gb|EAL44598.1| chromodomain-helicase-DNA-binding protein, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449707532|gb|EMD47179.1| chromodomain helicase-DNA-binding protein, putative [Entamoeba
histolytica KU27]
Length = 1247
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 141/556 (25%), Positives = 239/556 (42%), Gaps = 124/556 (22%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKW-GIDIP 160
G GCI++ G GKT + FL+ P +I+ P SM+ W E +W +++
Sbjct: 318 GKGCILADEMGLGKTVQVVSFLEHLYSFQKLQGPFLIVVPLSMIEHWHREILEWTDMNVV 377
Query: 161 FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV 220
Y+ +K G L++Y + Y +K G L + F L+
Sbjct: 378 IYHGSK----------------------GNRQLVKYYEWY-YKDFQGKLIPGHLKFHVLL 414
Query: 221 SGDELSGILLDLPGL-------FVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQN 273
+ E+ ++ D L V DE H +N D+ + KAL I+T +++L+GTP QN
Sbjct: 415 TTYEI--VISDWEDLSKISWLVTVVDEAHRLKNKDSKLLKALCNIQTNHKVLLTGTPIQN 472
Query: 274 NFQELENTLSLVR-------QEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEK 326
N EL L+ + +EF ++ KS +++K
Sbjct: 473 NLGELWTLLNYIEPKTFPSLEEFDHEFNSLDKSAEQVNK--------------------- 511
Query: 327 LKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV-EGVKSFVE---- 381
L+E I PF +++S+P +++ ++ QK+ +A+ E + F+
Sbjct: 512 ---LQESIKPFFLRRMKNEVEKSIPPKEETIIEVELTMVQKQYYRALYEKNREFLNKGCV 568
Query: 382 -------LNYCVSLLSV--HPSLLPQQFFESFDVDSAKLARLKLDPEAG-------IKTR 425
N + L V HP L+P V+ A+ PE I++
Sbjct: 569 GSNVPNLQNLMMQLRKVCNHPYLIP-------GVEEKDTAQF---PEGSPDYFNQLIRSS 618
Query: 426 FLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKK 479
L+LL+ + + KVL+FSQ + L +I + L+++ + E +DG +
Sbjct: 619 GKLVLLDKLLPKLYADHHKVLIFSQLKKVLNIIEKYLKYKGYFYER-----LDGSIKSED 673
Query: 480 RQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLG 539
RQ++I+ +P I L T+A GINL A V++ D WNP + QA +R +R+G
Sbjct: 674 RQNAIDRFMNPEMNRFIFLLCTRAGGFGINLSEADTVIIFDSDWNPQNDLQAQARCHRIG 733
Query: 540 QKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEM 599
QK+ V VY L++ T E R + K+ V + TT+S+P +DK
Sbjct: 734 QKKEVKVYRLVSKNTYERYMFERASMKLGLDQAVLANI-------TTSSDP-KDK----- 780
Query: 600 AQLYNNPSETLINAII 615
PS+ LI +++
Sbjct: 781 ----QQPSKELIESLL 792
>gi|52630322|ref|NP_005843.2| chromodomain-helicase-DNA-binding protein 3 isoform 2 [Homo sapiens]
gi|119610520|gb|EAW90114.1| chromodomain helicase DNA binding protein 3, isoform CRA_a [Homo
sapiens]
gi|119610522|gb|EAW90116.1| chromodomain helicase DNA binding protein 3, isoform CRA_a [Homo
sapiens]
Length = 1966
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 754 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 811
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 812 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 861
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 862 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 916
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 917 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 958
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 959 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1017
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1018 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1072
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1073 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1127
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1128 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1187
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1188 ASVEERITQVAKRKMMLTHLV 1208
>gi|52630326|ref|NP_001005273.1| chromodomain-helicase-DNA-binding protein 3 isoform 1 [Homo sapiens]
gi|88911273|sp|Q12873.3|CHD3_HUMAN RecName: Full=Chromodomain-helicase-DNA-binding protein 3;
Short=CHD-3; AltName: Full=ATP-dependent helicase CHD3;
AltName: Full=Mi-2 autoantigen 240 kDa protein; AltName:
Full=Mi2-alpha; AltName: Full=Zinc finger helicase;
Short=hZFH
gi|119610521|gb|EAW90115.1| chromodomain helicase DNA binding protein 3, isoform CRA_b [Homo
sapiens]
Length = 2000
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 754 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 811
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 812 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 861
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 862 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 916
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 917 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 958
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 959 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1017
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1018 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1072
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1073 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1127
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1128 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1187
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1188 ASVEERITQVAKRKMMLTHLV 1208
>gi|354469736|ref|XP_003497281.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein 3-like [Cricetulus griseus]
Length = 1959
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 770 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 827
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 828 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 877
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 878 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 932
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 933 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 974
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 975 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1033
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1034 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1088
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1089 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1143
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1144 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1203
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1204 ASVEERITQVAKRKMMLTHLV 1224
>gi|332250910|ref|XP_003274592.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein 3 [Nomascus leucogenys]
Length = 1985
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 224/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 754 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 811
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 812 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 861
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 862 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 916
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 917 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 958
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 959 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1017
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1018 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1072
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + F EG + +DG RQ +I+ N P +
Sbjct: 1073 KEQGHRVLIFSQMTKMLDLLED-----FXDYEGYKYERIDGGITGALRQEAIDRFNAPGA 1127
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1128 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1187
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1188 ASVEERITQVAKRKMMLTHLV 1208
>gi|395748521|ref|XP_002827042.2| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein 3 [Pongo abelii]
Length = 1993
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 739 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 796
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 797 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 846
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 847 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 901
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 902 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 943
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 944 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1002
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1003 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1057
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1058 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1112
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1113 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1172
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1173 ASVEERITQVAKRKMMLTHLV 1193
>gi|167535609|ref|XP_001749478.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772106|gb|EDQ85763.1| predicted protein [Monosiga brevicollis MX1]
Length = 1903
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 133/477 (27%), Positives = 203/477 (42%), Gaps = 67/477 (14%)
Query: 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNK 166
I++ G GKT T+ F+ R +I+AP S WE EF +W D+
Sbjct: 660 ILADEMGLGKTLQTIAFVSWLKHTAQRGPFLIVAPLSTCPNWEREFAQWAPDLHVVTF-- 717
Query: 167 PELSGKENNGAVALMDNRKRGRGKVGLIRY-VKLYSWKMGTGILGLSYRLFEKLVSGDEL 225
+ G + + + GK R+ V + +W + IL + +F K V D
Sbjct: 718 --IGGASSREVIK--QHELYTPGKTRRRRFDVIITAWNV---ILSEAA-VFRK-VKWD-- 766
Query: 226 SGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
L DEGH ++ + + L + RI+L+GTP QNN QEL N L +
Sbjct: 767 ---------LLAVDEGHRLKSRSSQLTTVLESCTSDFRILLTGTPLQNNLQELYNLLMYL 817
Query: 286 R-QEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGT 344
+EF E GRE R ++ E++ LK K+ + T
Sbjct: 818 NPEEFKEF------EGRE--------------RLSDEETKEEIATLKPKLKKHMLRRLKT 857
Query: 345 VLQESLPGLRHSVVILQPDEFQKR------------LCKAVEGVKSFVELNYCVSLLSVH 392
+ + +P VV + Q+R L +GV S L + + H
Sbjct: 858 DVFKDMPQKVEVVVPAKLSSMQRRFYKELLAKNYSFLTATTQGVSSLNNLLMQLRKCANH 917
Query: 393 PSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLT 450
P L E D D A +KL A KT L ++L +VL+FSQ L
Sbjct: 918 PYLFDDAEPEVEDHD----AMVKLLVGASGKTLLLDMMLRKLKEQGHRVLIFSQMTRMLD 973
Query: 451 LIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINL 510
++ + + +R G +DG D+ RQ I+ + P S A + L ST+A GINL
Sbjct: 974 ILQDIMMYR-----GYHCCRLDGNTDILTRQEQIDEFSRPDSDAFVFLLSTRAGGLGINL 1028
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567
A +++ D WNP + QA++RA+R+GQK +V VY ++ T+E LRR K+
Sbjct: 1029 TTADTIIIFDSDWNPHADLQALARAHRIGQKNLVMVYRFVSVNTVEERILRRAREKL 1085
>gi|332847234|ref|XP_003315413.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3 isoform 2 [Pan
troglodytes]
Length = 1966
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 754 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 811
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 812 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 861
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 862 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 916
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 917 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 958
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 959 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1017
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1018 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1072
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1073 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1127
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1128 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1187
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1188 ASVEERITQVAKRKMMLTHLV 1208
>gi|321479460|gb|EFX90416.1| hypothetical protein DAPPUDRAFT_232072 [Daphnia pulex]
Length = 2083
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 152/573 (26%), Positives = 250/573 (43%), Gaps = 107/573 (18%)
Query: 59 WELVPRDVRKK---MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTG 115
WE P + + P+Q EG ++ S G G I++ G G
Sbjct: 807 WERQPEYIDASGMALHPYQMEGLNWL---------------RYSWGQGTDTILADEMGLG 851
Query: 116 KTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYN----------- 163
KT T+ FL + Y + H R ++ P S ++ WE EF+ W D FY
Sbjct: 852 KTIQTITFLYSLYKEGHCRGPFLVAVPLSTIINWEREFETWAPD--FYVVTYVGDKDSRV 909
Query: 164 -LNKPELSGKENNGAVALMDNRKRGRGKVGLIRY--VKLYSWKMGTGILGLSYRLFEKLV 220
+ + ELS +E GAV RG K IR VK + +L SY +LV
Sbjct: 910 VIREHELSFEE--GAV-------RGGNKACKIRTNSVKFH-------VLLTSY----ELV 949
Query: 221 SGDELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
S D + +L + + V DE H +N+ + F+ L+ R +++L+GTP QNN +EL
Sbjct: 950 SID--AALLNSIEWAVLVVDEAHRLKNNQSKFFRILNSYNLRYKLLLTGTPLQNNLEELF 1007
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVN 339
+ L+ + K L++ A+ +E++K L + + P +
Sbjct: 1008 HLLNF------------------LCPDKFNDLLAFTNEFADLAKEEQVKRLHDMLGPHML 1049
Query: 340 VHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN-----YCVSLLSV--- 391
+ +++P +V ++ QK+ K V ++F LN VSLL++
Sbjct: 1050 RRLKADVLKNMPTKSEFIVRVELSPMQKKYYKYV-LTRNFEALNSRTGGQQVSLLNIMMD 1108
Query: 392 ------HPSLLPQQFFESFDVDSAKLARLKLDPEAG---IKTRFLLILLELSTNEKVLVF 442
HP L P E+ + + L +G + ++ L +L E +VL+F
Sbjct: 1109 LKKCCNHPYLFPVASQEAPCLQNGMYETTALVKASGKLVLLSKMLRVLKE--QGHRVLIF 1166
Query: 443 SQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLAS 500
SQ + L ++ + L EG++ Y +DG RQ +I+ N P + + L S
Sbjct: 1167 SQMTKMLDILEDFL-------EGEQYKYERIDGGITGTLRQDAIDRFNAPGAPQFVFLLS 1219
Query: 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKL 560
T+A GINL A VV+ D WNP + QA SRA+R+GQ V +Y +T ++E
Sbjct: 1220 TRAGGLGINLATADTVVIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVT 1279
Query: 561 RRQARKVWWSNMVFPSSDGGGNDQTTASEPLED 593
+ +K+ +++V G G T + + L+D
Sbjct: 1280 QVAKKKMMLTHLVV--RPGMGAKGTFSKQELDD 1310
>gi|242077806|ref|XP_002448839.1| hypothetical protein SORBIDRAFT_06g034160 [Sorghum bicolor]
gi|241940022|gb|EES13167.1| hypothetical protein SORBIDRAFT_06g034160 [Sorghum bicolor]
Length = 1042
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 147/584 (25%), Positives = 243/584 (41%), Gaps = 122/584 (20%)
Query: 36 NSRDSGFDSQTG--CDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDE 93
NS D G++ DP A + +P + K +F HQREG ++W
Sbjct: 298 NSEDVGWEKTEDFKMDPTGTAATSKPYKLPGKIFKMLFSHQREGLRWLW----------- 346
Query: 94 LKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFK 153
+ + TGG I+ G GKT FL R +I+AP+++L W +E
Sbjct: 347 VLHCRGTGG----ILGDDMGLGKTMQVAAFLAGLFHSRLVKRVLIVAPKTLLAHWTKELS 402
Query: 154 KWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKL-YSWKMGTGILGLS 212
G+ + + P + IR +L Y++K G GIL +
Sbjct: 403 IVGLKEKIRDYSGPSTN-----------------------IRSYELQYAFKEG-GILLTT 438
Query: 213 YRLFE---KLVSG------DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRR 263
Y + KL+ G DE G L + + DEGH +N+ T ++L I R
Sbjct: 439 YDIVRNNYKLIRGNSYNNDDEEEGTLWNY---IILDEGHLIKNNKTQRAQSLYEIPCAHR 495
Query: 264 IILSGTPFQNNFQELENTLSLV-------RQEFGEVLRT-VRKSGREISKAKHASLISSI 315
I++SGTP QNN +E+ + +Q+F T + + + + A+ + S++
Sbjct: 496 IVISGTPIQNNLKEMWTLFNFCCPDVLGDKQQFKIRFETPILRGNDKNATAREKHVGSNV 555
Query: 316 GRCANHRDDEKLKELKEKIAPF--------VNVHKGTVLQESLPGLRHSVVILQPDEFQK 367
KEL+E+I P+ V G +++L +V L+ Q+
Sbjct: 556 A-----------KELRERIKPYFLRRMKSEVVFDTGASEEKTLAKKNELIVWLKLTPCQR 604
Query: 368 RLCK----------AVEGVKSFVELNYCVSLLSVHPSLLPQQ------------------ 399
+L A++ S + + + HP LL ++
Sbjct: 605 KLYTAFLNSELVHLALQPKASPLAAITILKKICDHPLLLTKKGAEGVLEGMDEMLNDQDI 664
Query: 400 -FFESFDVDSAKLAR----LKLDPEAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLI 452
E ++ A +A L++ + K F++ LL + VL+FSQ + L LI
Sbjct: 665 GMVEKMAMNLADMAHDDDALQVGQDVSCKLSFIMSLLRNLVGEGHHVLIFSQTRKMLNLI 724
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
E + EG E L +DG V +R+ + + A I L +T+ G+ L
Sbjct: 725 QEAI-----ILEGYEFLRIDGTTKVSERERIVKDFQE-GRGAPIFLLTTQVGGLGLTLTK 778
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
A+RV+++D WNP + Q++ RAYR+GQ + V VY L+TS T+E
Sbjct: 779 AARVIVVDPAWNPSTDNQSVDRAYRIGQTKNVIVYRLMTSATIE 822
>gi|348560832|ref|XP_003466217.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3-like [Cavia
porcellus]
Length = 1995
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 748 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 805
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 806 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 855
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 856 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 910
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 911 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 952
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 953 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1011
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1012 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1066
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1067 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1121
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1122 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1181
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1182 ASVEERITQVAKRKMMLTHLV 1202
>gi|339242107|ref|XP_003376979.1| domain protein, SNF2 family [Trichinella spiralis]
gi|316974280|gb|EFV57776.1| domain protein, SNF2 family [Trichinella spiralis]
Length = 2137
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 149/556 (26%), Positives = 247/556 (44%), Gaps = 91/556 (16%)
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKL--------------HPRCR-PVII-APRSMLLTWE 149
I++ G GKT T+VFL + K + C+ P +I AP S ++ WE
Sbjct: 741 AILADEMGLGKTIQTIVFLYSLYKEVREKGIEQQLLNNPYGHCKGPFLISAPLSTIINWE 800
Query: 150 EEFKKWGIDIPFYNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIRYVKLYSWK 203
EF+ W D FY + G +++ AV + ++ +G K G +R
Sbjct: 801 REFEFWAPD--FYVVT---YIGDKDSRAVIREHEFSFVEGAVKGGPKPGKLR-------- 847
Query: 204 MGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRR 263
G GI + +L+S D + +D + V DE H +N+ + F+ L K +
Sbjct: 848 TGEGIKFHALLTSYELISIDHTTLGSIDW-AMLVVDEAHRLKNNQSKFFRTLRDFKLNFK 906
Query: 264 IILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRD 323
++L+GTP QNN +EL + L+ + E + + +ISK
Sbjct: 907 VLLTGTPLQNNLEELFHLLNFLSPERFCDMELFTQEFTDISK------------------ 948
Query: 324 DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN 383
+E++ +L + P + + + + +P +V ++ QK+ K V K+F LN
Sbjct: 949 EEQIAKLHSLLGPHMLRRLKSDVLKGMPAKSELIVRVELSTIQKKYYKYVL-TKNFDALN 1007
Query: 384 Y-C----VSLLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLI 429
C VSLL++ HP L P E+ KL + A +K+ LI
Sbjct: 1008 TRCGGSQVSLLNIMMDLKKCCNHPYLFPIAASEA-----PKLPNGAFEGSALVKSCGKLI 1062
Query: 430 LLEL------STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSS 483
LL+ +VL+FSQ + L LI + L + EG + +DG RQ +
Sbjct: 1063 LLQKMLRMLKEGGHRVLIFSQMTKMLDLIEDFLEY-----EGYKYERIDGSVTGSLRQDA 1117
Query: 484 INVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRV 543
I+ N P++ + L ST+A GINL A V++ D WNP + QA SRA+R+GQ R
Sbjct: 1118 IDRFNAPNAPQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNRK 1177
Query: 544 VHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKIL----EEM 599
V +Y +T ++E +K+ +++V + G GN + S+ D +L EE+
Sbjct: 1178 VMIYRFVTRNSVEERITTVAKKKMMLTHLVVRA--GIGNRGPSMSKQELDDVLRWGTEEL 1235
Query: 600 AQLYNNPSETLINAII 615
+ ++ E + II
Sbjct: 1236 FKEGDDEKENTDHQII 1251
>gi|390462993|ref|XP_002806848.2| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein 3, partial [Callithrix jacchus]
Length = 1943
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 744 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 801
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 802 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 851
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 852 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 906
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 907 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 948
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 949 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1007
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1008 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1062
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1063 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1117
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1118 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1177
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1178 ASVEERITQVAKRKMMLTHLV 1198
>gi|311268329|ref|XP_003132000.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3 isoform 2 [Sus
scrofa]
Length = 2002
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 224/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 754 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 811
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 812 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 861
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 862 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 916
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 917 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 958
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 959 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1017
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK L+LL+
Sbjct: 1018 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKASGKLMLLQKMLRKL 1072
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1073 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1127
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1128 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1187
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1188 ASVEERITQVAKRKMMLTHLV 1208
>gi|402586718|gb|EJW80655.1| type III restriction enzyme, partial [Wuchereria bancrofti]
Length = 660
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/544 (24%), Positives = 240/544 (44%), Gaps = 107/544 (19%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
V + + + PHQ++G F+++ + G S GG I++ G GKT T+
Sbjct: 13 VDVQIARHLRPHQKDGVAFMYRCLKG-----------SHGGA---ILADEMGLGKTVQTI 58
Query: 122 VFLQAYMKLHPRCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNG 176
+ A +K +P+I + P S+L W EF KW +L+ E
Sbjct: 59 SLITALIKKRLNQKPIIRKCIIVVPTSLLNNWYAEFMKWSPQTQTMLFRVLKLTDLE--- 115
Query: 177 AVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLF 236
KL S++ + I +S+ + + + +LS + +DL
Sbjct: 116 ---------------------KLISYRNTSMIAIVSHEMIAR--TAAKLSVVSVDL---L 149
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE----FGEV 292
V DE H +N + + + L + +RR++L+GTP QN+ +E + ++ R + F E
Sbjct: 150 VCDEAHRIKNLNGRLREQLQILHAQRRLLLTGTPMQNDLEEFYSLVNFARPDLFISFSEF 209
Query: 293 LRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKEL---KEKIAPFVNVHKGTVLQES 349
K+ E+ + L++ + R E + +L K+++ ++ + + LQ S
Sbjct: 210 -----KNLCEMEPTRFNELLAEVML---RRTAEVIHDLLPPKKQVVDYIVWCRPSALQCS 261
Query: 350 --------LP--------GLR----HSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLL 389
LP LR H ++ Q +++ CK V G + F +LL
Sbjct: 262 IYKNLKKFLPYDHLTLIDALRKLCNHPSLLYQSMIVKRQTCKVV-GEREFYN-----ALL 315
Query: 390 SVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPL 449
P+ F +F + + +L + E R EKV++ S + + L
Sbjct: 316 QSFPNT-----FSAFSLSTTDSGKLNVFVELLGTFR--------EQEEKVVIVSNFTQTL 362
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509
L+ E R + +L +DG + KKR + N S++ L S KA G+N
Sbjct: 363 DLLEELCRTLY-----YTILRLDGSTEAKKRMEIVEEFNSLSNKNYAFLLSAKAGGLGLN 417
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
LVGA+R++L D WNP V+ QA++R +R GQ+R H++ L+T+ T++ L+RQ +K
Sbjct: 418 LVGANRMILFDSDWNPAVDMQAMARIWRQGQERPCHIFRLVTAGTVDEKILQRQIKKSSL 477
Query: 570 SNMV 573
+ +V
Sbjct: 478 NTVV 481
>gi|440906247|gb|ELR56532.1| DNA repair and recombination protein RAD54B [Bos grunniens mutus]
Length = 911
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 143/570 (25%), Positives = 232/570 (40%), Gaps = 109/570 (19%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ+EG F+++ + G G G I++ G GKT + +
Sbjct: 298 PHQKEGITFLYECVMG----------MRVNGRCGAILADEMGLGKTLQCISLIWTLQCQG 347
Query: 132 PRC------RPVIIAPRSMLLTWEEEFKKW-GID-IPFYNLNKPELSGKENNGAVALMDN 183
P + +I+ P S++ W++EF+KW GI+ I + +++
Sbjct: 348 PYGGKPIVKKTLIVTPGSLVNNWKKEFQKWLGIERIKIFTVDQDH--------------- 392
Query: 184 RKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHT 243
KV YS +L +SY + L S D++ + DL + DEGH
Sbjct: 393 ------KVEEFTKSPFYS------VLIISYEML--LRSLDQIKNVKFDL---LICDEGHR 435
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE- 302
+N AL + +RIIL+GTP QN+ QE + V L RK E
Sbjct: 436 LKNSTIKTTTALISLSCEKRIILTGTPVQNDLQEFFTLIDFVNPGILGSLSAYRKIYEEP 495
Query: 303 --ISKAKHASLISSIGRCANHRD--DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
IS+ AS R+ +++ EL F+ V+ + LP +VV
Sbjct: 496 IIISRQPSAS--------EEERELGEQRAAELTCLTGLFILRRTQEVINQYLPPKIENVV 547
Query: 359 ILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSV---HPSLL--------- 396
+P Q L + ++G+ C+ L HP LL
Sbjct: 548 FCRPGALQIALYRKLLNSQAVRFCLQGLLENTSHLICIGALKKLCNHPCLLFGSIKEKES 607
Query: 397 --------PQQFFES----FDVDSAKLARLKLDPEAG---IKTRFLLILLEL--STNEKV 439
+ +E F D + + + E+G + ++ L ++ EL +V
Sbjct: 608 NSTWDESEERNLYEGLMNVFPADYNPI--MFTEEESGKLQVLSKLLAVIRELRPEVRGQV 665
Query: 440 LVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
++ S Y L ++ E + R G +DG+ + +RQ ++ N S I L
Sbjct: 666 VLVSNYTRTLDILQEVCK-----RHGYAYTRLDGQTPISQRQQIVDGFNSKYSSDFIFLL 720
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
S+KA G+NL+G S ++L D+ WNP + QA+SR +R GQK VH+Y L+T+ T+E
Sbjct: 721 SSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKI 780
Query: 560 LRRQARKVWWSNMVFPSSDGGGNDQTTASE 589
+RQ K S V S + Q + E
Sbjct: 781 YQRQISKQGLSGAVIDLSKTSDHIQFSVEE 810
>gi|315041194|ref|XP_003169974.1| DNA repair and recombination protein RAD26 [Arthroderma gypseum CBS
118893]
gi|311345936|gb|EFR05139.1| DNA repair and recombination protein RAD26 [Arthroderma gypseum CBS
118893]
Length = 1226
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 147/558 (26%), Positives = 229/558 (41%), Gaps = 103/558 (18%)
Query: 62 VPRDVRKKMFPHQREGFEFIW---KNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
+P D+ +F +Q+ G +++W + GGI DE+ G GKT
Sbjct: 389 LPGDIHPYLFDYQKTGVKWLWELYQQQVGGIIGDEM------------------GLGKTI 430
Query: 119 LTLVFLQAYMKLHPRCRPVIIA-PRSMLLTWEEEFKKWGIDIPF------------YNLN 165
+ FL P+I+ P +++ W EF +W PF N+
Sbjct: 431 QVIAFLAGIHYSKKLKGPIIVVCPPTVMKQWVNEFHRWWP--PFRVSILHTSGSGMVNIK 488
Query: 166 KPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225
+ V N RG R +K +L + L
Sbjct: 489 SESQAEDRYTSGVWGDRNATSQRGNKAARRILKR--------VLEDGHVLVTTYAGLQTY 540
Query: 226 SGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
S +L+ + G+ V DEGH RN DT + ++T R+ILSGTP QNN EL +
Sbjct: 541 SSLLIPVDWGIAVLDEGHKIRNPDTSITIHCKELRTSHRLILSGTPMQNNLTELWSLFDF 600
Query: 285 V-----------RQEFGEVLRTVRKSGREISKAKHASL-ISSIGRCANHRDDEKLKELKE 332
V R +F +RT A ++L + + +CA + LK+
Sbjct: 601 VFPMRLGTLVNFRNQFELPIRTG-------GYANASNLQVQTAAKCA--------ETLKD 645
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKA--VEGVKSFV-----ELNYC 385
I+P++ + LP V+ + + Q+ +A G S + E Y
Sbjct: 646 AISPYLLQRFKMDVAADLPKKSEQVLFCKLTKVQRAAYEAFLASGEMSSILRGRREALYG 705
Query: 386 VSLLSV---HPSLLPQQFF-ESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKV 439
+ +L HP L + + D + A+ K + + LLEL T K
Sbjct: 706 IDMLRKICNHPDLTQHKILSQKTDYNYGSGAKSG-------KMQVVKSLLELWKETGHKT 758
Query: 440 LVFSQYIEPLTLIMEQLR--HRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARI 496
L+F+Q+ L ++ +R FN+R MDG +K RQS ++ N DP +
Sbjct: 759 LLFAQHRIMLDILERFIRGFDGFNYRR------MDGNTPIKARQSMVDEFNNDPD--LHV 810
Query: 497 MLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
L +TK G+NL GA RV++ D WNP + QA RA+RLGQKR V +Y L+T+ T+E
Sbjct: 811 FLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDMQARERAWRLGQKREVTIYRLMTAGTIE 870
Query: 557 WDKLRRQARKVWWSNMVF 574
RQ K + +N +
Sbjct: 871 EKIYHRQIFKQFLTNKIL 888
>gi|302499754|ref|XP_003011872.1| hypothetical protein ARB_01851 [Arthroderma benhamiae CBS 112371]
gi|291175426|gb|EFE31232.1| hypothetical protein ARB_01851 [Arthroderma benhamiae CBS 112371]
Length = 921
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 140/546 (25%), Positives = 224/546 (41%), Gaps = 83/546 (15%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQ+EG +F+++ + G + G G I++ G GKT T+ +
Sbjct: 250 KHLREHQKEGVKFLYECVMGLRPFN----------GEGAILADEMGLGKTLQTIALIWTL 299
Query: 128 MKLHP--RCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P +PVI + P +++ W++EFKKW L + +G
Sbjct: 300 LKQNPIYGSQPVIKKALIVCPVTLINNWKKEFKKW--------LGSDRIGVFVADGKGNR 351
Query: 181 MDNRKRGRG-KVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG--LFV 237
+ + GR V +I Y +L S + ++L G PG + V
Sbjct: 352 LSDFTMGRSYSVMIIGYERLRSVQ-------------DQLTKG----------PGIDIVV 388
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DEGH + +A+ + T RRIILSGTP QN E + V L T +
Sbjct: 389 ADEGHRLKTVQNKSSQAIQSLNTTRRIILSGTPIQNELSEFFAMVDFVNPAL---LGTFK 445
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
R+ + + + + + +EL E +PF+ +L + LP +
Sbjct: 446 SFMRDFEGPIVGARQPNAPKKVIEKGKARSEELAELTSPFILRRTADILSKHLPPKTEYI 505
Query: 358 VILQPDEFQKRLCKAV----------EGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVD 407
+ P Q+ + V +S ++L + + PSLL + ++ +
Sbjct: 506 LFCNPTSAQRSVYHHVLASPMFQSVLRNSESALQLITILKKVCNSPSLLKPKVEDNGKGE 565
Query: 408 SAKLARL--KLDPE------AGIKTRF-----LLILLELSTNEKVLVFSQYIEPLTLIME 454
++ L L P AG + LL L+ T EKV++ S Y
Sbjct: 566 DTSMSALLSSLPPNIHRCLAAGSSGKIRVLDQLLYNLQSKTKEKVVLVSNYTS-----TL 620
Query: 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGINLVGA 513
L L +DG KRQ+ + N PSS L S KA G+NL+GA
Sbjct: 621 NLLANLLTSLDLPFLRLDGSTPATKRQALVEDFNRSPSSSCFAFLLSAKAGGTGLNLIGA 680
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
SR+VL DV WNP + QA++R +R GQKR H+Y L+ +E +RQ K+ ++ V
Sbjct: 681 SRLVLFDVDWNPATDIQAMARIHRDGQKRHCHIYRLLLKGGIEEKIWQRQVTKLGLADSV 740
Query: 574 FPSSDG 579
G
Sbjct: 741 MDQKGG 746
>gi|426238820|ref|XP_004013342.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein 3 [Ovis aries]
Length = 2020
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 224/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 772 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 829
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 830 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 879
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 880 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 934
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 935 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 976
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 977 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1035
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK L+LL+
Sbjct: 1036 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKASGKLMLLQKMLRKL 1090
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1091 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1145
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1146 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1205
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1206 ASVEERITQVAKRKMMLTHLV 1226
>gi|431894030|gb|ELK03836.1| Chromodomain-helicase-DNA-binding protein 3 [Pteropus alecto]
Length = 2007
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 224/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 760 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 817
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 818 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 867
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 868 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 922
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 923 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 964
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 965 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1023
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK L+LL+
Sbjct: 1024 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKASGKLMLLQKMLRKL 1078
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1079 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1133
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1134 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1193
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1194 ASVEERITQVAKRKMMLTHLV 1214
>gi|410979901|ref|XP_003996319.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein 3 [Felis catus]
Length = 2100
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 224/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 848 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 905
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 906 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 955
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 956 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 1010
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 1011 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 1052
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 1053 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1111
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK L+LL+
Sbjct: 1112 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKASGKLMLLQKMLRKL 1166
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1167 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1221
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1222 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1281
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1282 ASVEERITQVAKRKMMLTHLV 1302
>gi|354482677|ref|XP_003503524.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair and recombination
protein RAD54B-like [Cricetulus griseus]
Length = 950
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 153/580 (26%), Positives = 238/580 (41%), Gaps = 115/580 (19%)
Query: 74 QREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT--GLTLVF---LQAYM 128
Q+EG F+++ + G G G I++ G GKT ++L++ Q
Sbjct: 341 QKEGIIFLYECVMG----------MRENGRCGAILADEMGLGKTLQCISLIWTLQCQDXX 390
Query: 129 KLHPRC-RPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG 187
P R +I+ P S++ W +EF+KW G E + + K
Sbjct: 391 GGKPVIKRTLIVTPGSLVNNWRKEFQKW--------------LGSERIKTFTVDQDHK-- 434
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND 247
V+ + +L +SY + L S D++ I DL + DEGH +N
Sbjct: 435 ---------VEEFIKSTFYSVLIISYEML--LRSLDQIKTIKFDL---LICDEGHRLKNS 480
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-----------RQEFGEVLRTV 296
AL + +R+IL+GTP QN+ QE + V R+ + E +
Sbjct: 481 SIKTTAALFSLPCEKRVILTGTPVQNDLQEFFALVDFVNPGILGSLPSYRKIYEEPIIMS 540
Query: 297 R-----KSGREISKAKHASLISSIGRCANHRDDEKL-KELKEKIAPFVNVHKGTV----- 345
R K +E+ + + L GR R E + K L KI V +
Sbjct: 541 REPSSSKEEKELGERRAVELSCLTGRFILRRTQEVINKYLPPKIENVVFCQPVALQTELY 600
Query: 346 ------------LQESLPGLRHSVVILQPDEFQKRLCKAVEGVKS--------FVELNYC 385
LQ L H + I + C VKS E+N C
Sbjct: 601 RKLLSSQSVRFCLQGLLENSTHLICIGALKKLCNHPCLLFSSVKSKEFSSSDENEEMNLC 660
Query: 386 VSLLSVHPSLL-PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQ 444
LL+++P+ P QF E+ +S KL L + L + EL EKV++ S
Sbjct: 661 KGLLTLYPTGYDPLQFSEN---ESGKLQVL---------VKLLAAIHELRPTEKVVLVSN 708
Query: 445 YIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKAC 504
Y + L ++ + R G +DG+ V +RQ ++ N S I L S+KA
Sbjct: 709 YRQTLNILEGICK-----RHGYACARLDGQTPVSQRQQIVDNFNSKYSTDFIFLLSSKAG 763
Query: 505 CEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQA 564
G+NL+G S ++L D+ WNP + QA+SR +R GQK VH+Y L+T+ T+E +RQ
Sbjct: 764 GVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQI 823
Query: 565 RKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYN 604
K S V D T +SE ++ + EE+ L+
Sbjct: 824 SKQGLSGAVV--------DLTKSSEHIQFSV-EELKDLFT 854
>gi|417413984|gb|JAA53300.1| Putative chromatin remodeling complex wstf-iswi small subunit,
partial [Desmodus rotundus]
Length = 1846
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 224/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 721 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 778
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 779 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 828
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 829 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 883
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 884 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 925
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 926 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 984
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK L+LL+
Sbjct: 985 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKASGKLMLLQKMLRKL 1039
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1040 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1094
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1095 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1154
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1155 ASVEERITQVAKRKMMLTHLV 1175
>gi|355678671|gb|AER96180.1| chromodomain helicase DNA binding protein 3 [Mustela putorius furo]
Length = 1740
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 224/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 629 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 686
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 687 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 736
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 737 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 791
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 792 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 833
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 834 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 892
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK L+LL+
Sbjct: 893 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKASGKLMLLQKMLRKL 947
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 948 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1002
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1003 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1062
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1063 ASVEERITQVAKRKMMLTHLV 1083
>gi|345800551|ref|XP_536627.3| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein 3 [Canis lupus familiaris]
Length = 1999
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 224/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 753 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 810
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 811 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 860
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 861 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 915
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 916 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 957
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 958 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1016
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK L+LL+
Sbjct: 1017 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKASGKLMLLQKMLRKL 1071
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1072 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1126
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1127 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1186
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1187 ASVEERITQVAKRKMMLTHLV 1207
>gi|311268331|ref|XP_003131999.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3 isoform 1 [Sus
scrofa]
Length = 1968
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 224/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 754 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 811
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 812 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 861
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 862 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 916
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 917 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 958
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 959 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1017
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK L+LL+
Sbjct: 1018 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKASGKLMLLQKMLRKL 1072
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1073 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1127
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1128 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1187
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1188 ASVEERITQVAKRKMMLTHLV 1208
>gi|148667386|gb|EDK99802.1| mCG144495 [Mus musculus]
Length = 680
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 113 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 157
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 158 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 215
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 216 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 261
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 262 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 321
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 322 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 363
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 364 ELSPMQKKYYKYIL-TRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 419
Query: 407 DSAKLARLKLDPEAGIKTR------FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 420 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 475
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 476 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 532
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 533 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 577
>gi|293379105|ref|ZP_06625256.1| SNF2 family N-terminal domain protein [Enterococcus faecium PC4.1]
gi|292642246|gb|EFF60405.1| SNF2 family N-terminal domain protein [Enterococcus faecium PC4.1]
Length = 705
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 133/532 (25%), Positives = 228/532 (42%), Gaps = 93/532 (17%)
Query: 45 QTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGN 104
QT H +G +L P+ + KM +Q++GF W + G
Sbjct: 229 QTMVQNLIHPEGYQAQL-PKGLNAKMREYQKQGFR--WLKMLGHYQF------------- 272
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNL 164
G I++ G GKT T+ FL + + +I+AP S++ W+ E KK+
Sbjct: 273 GGILADEMGLGKTLQTIAFLLSEKEERESFSALIVAPASLIYNWQAEVKKFA-------- 324
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
P LS + +++ K+ R ++ T I SY + ++ +
Sbjct: 325 --PSLS-------IQVINGNKKEREEL----------LAKDTDIRVTSYASLRQDLADYQ 365
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
I + DE +N T +AL + +R LSGTP +NN +EL + +
Sbjct: 366 SQKI-----DYLILDEAQMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLFAT 420
Query: 285 VRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAPFV 338
+ F + RE++ + A +I R R D++ LK+L EK + +
Sbjct: 421 IMPGFF----PTKTKFRELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYSAL 472
Query: 339 NVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQ 398
+ TV L +R + + + F+K + G+ ++ C P+
Sbjct: 473 TEEQKTVYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQI--CCD---------PR 521
Query: 399 QFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRH 458
F E + S KL ++K L++ +VL+FSQ+ LT++ E+L
Sbjct: 522 LFIEDYQGGSGKLEQVKD-----------LLVAAKENKRRVLLFSQFTGMLTILQEELAE 570
Query: 459 RFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVL 518
G Y+ G + R S ++ N + + + L S KA G+NL GA V+L
Sbjct: 571 L-----GISTFYLRGSTKPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTVIL 623
Query: 519 LDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
D+ WNP +E QA RA+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 624 YDLWWNPAIEEQAAGRAHRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 675
>gi|340380649|ref|XP_003388834.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3 homolog
[Amphimedon queenslandica]
Length = 1451
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 140/549 (25%), Positives = 236/549 (42%), Gaps = 73/549 (13%)
Query: 70 MFPHQREGFEFI---WKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA 126
+ P+Q EG +I W I DE+ G GKT T+ FL +
Sbjct: 217 LHPYQLEGINWIRFSWAQNTNTILADEM------------------GLGKTIQTISFLYS 258
Query: 127 YMKLHPRCRPVII-APRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV------A 179
+K P +I AP S ++ WE EF+ W D+ + G ++N A+ +
Sbjct: 259 LVKEGHTNGPFLISAPLSTIINWEREFEFWAPDLYVVTYH-----GSKDNRAIIREHEFS 313
Query: 180 LMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVF 238
+ +G K L R K K + Y VS D + +L + + V
Sbjct: 314 FVSGAVKGTSK-QLQRVKKDLPIKFNVLLTSYEY------VSVD--ATVLQSINWAVLVV 364
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK 298
DE H +N+ + F+ LS+ K + +++L+GTP QNN +EL + L+ + ++ L ++
Sbjct: 365 DEAHRLKNNQSKFFRVLSQYKIKYKLLLTGTPLQNNLEELFHLLNFLSRDNFNSLEEFQE 424
Query: 299 SGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHS-- 356
+ISK S + + A H L+ LK + + +++ L ++
Sbjct: 425 EFADISKEDQVSKLHDM--LAPHL----LRRLKADVLKNIPSKTELIVRVDLAPMQKKFY 478
Query: 357 --VVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARL 414
++ ++ + K V + ++L C S HP L P E+ A
Sbjct: 479 RWILTKNFEKLNTKGAKPVSLINIMMDLKKC----SNHPYLFPTAAEEA-----PLTAGG 529
Query: 415 KLDPEAGIKTRFLLILLEL------STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEV 468
+ A I + LI+LE + +VL+FSQ + L ++ + L H E
Sbjct: 530 YYEGTALIASSGKLIVLEKMLKKLKESGHRVLIFSQMTKMLDILEDFLEHLSYKYE---- 585
Query: 469 LYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVE 528
+DG +RQ I+ N P ++ + L ST+A GINL A V++ D WNP +
Sbjct: 586 -RIDGGVTGSERQQCIDRFNAPGAEQFVFLLSTRAGGLGINLASADTVIIFDSDWNPHND 644
Query: 529 RQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTAS 588
QA SRA+R+GQ V +Y +T ++E RK+ +++V G +Q + S
Sbjct: 645 VQAFSRAHRIGQANKVMIYRFVTRNSVEERVCEVAKRKMMLTHLVVRGGLGSTTNQPSLS 704
Query: 589 EPLEDKILE 597
+ D IL+
Sbjct: 705 KRELDDILK 713
>gi|17569817|ref|NP_510140.1| Protein CHD-3 [Caenorhabditis elegans]
gi|6165993|sp|Q22516.2|CHD3_CAEEL RecName: Full=Chromodomain-helicase-DNA-binding protein 3 homolog;
Short=CHD-3
gi|3879819|emb|CAA91810.1| Protein CHD-3 [Caenorhabditis elegans]
gi|11095331|gb|AAG29837.1| CHD-3 [Caenorhabditis elegans]
Length = 1787
Score = 130 bits (326), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 132/517 (25%), Positives = 235/517 (45%), Gaps = 64/517 (12%)
Query: 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAPRSMLLTWEEEFKKWGIDI 159
G I++ G GKT +L FL MK H + +I AP S ++ WE E + W D
Sbjct: 632 SNGTDAILADEMGLGKTVQSLTFLYTLMKEGHTKGPFLIAAPLSTIINWEREAELWCPD- 690
Query: 160 PFYNLNKPELSGKENNGAV-----ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYR 214
FY + + +E+ + + +D RG KV I+ ++ + +L SY
Sbjct: 691 -FYVVTY--VGDRESRMVIREHEFSFVDGAVRGGPKVSKIKTLE----NLKFHVLLTSY- 742
Query: 215 LFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNN 274
+ ++ D+ +D L V DE H +N+ + FK L + R++L+GTP QNN
Sbjct: 743 ---ECINMDKAILSSIDWAALVV-DEAHRLKNNQSTFFKNLREYNIQYRVLLTGTPLQNN 798
Query: 275 FQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKI 334
+EL + L+ + + L + EISK ++++++L +
Sbjct: 799 LEELFHLLNFLAPDRFNQLESFTAEFSEISK------------------EDQIEKLHNLL 840
Query: 335 APFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVSLL 389
P + + +P + +V ++ QK+ K + ++F LN +SL+
Sbjct: 841 GPHMLRRLKADVLTGMPSKQELIVRVELSAMQKKYYKNI-LTRNFDALNVKNGGTQMSLI 899
Query: 390 SV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----STN 436
++ HP L + E+ + + L AG +F+L+ L
Sbjct: 900 NIIMELKKCCNHPYLFMKACLEAPKLKNGMYEGSALIKNAG---KFVLLQKMLRKLKDGG 956
Query: 437 EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI 496
+VL+FSQ +T++++ L F EG + +DG ++RQ +I+ N P ++ +
Sbjct: 957 HRVLIFSQ----MTMMLDILED-FCDVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQFV 1011
Query: 497 MLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
L ST+A GINL A V++ D WNP + QA SRA+RLGQK V +Y +T ++E
Sbjct: 1012 FLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVE 1071
Query: 557 WDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLED 593
+K+ +++V + G + ++ + L+D
Sbjct: 1072 ERITSVAKKKMLLTHLVVRAGLGAKDGKSMSKTELDD 1108
>gi|326671885|ref|XP_003199545.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5 [Danio rerio]
Length = 1985
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 139/530 (26%), Positives = 235/530 (44%), Gaps = 73/530 (13%)
Query: 65 DVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFL 124
D + P+Q EG ++ + A G D I++ G GKT T+VFL
Sbjct: 702 DTGGTLHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFL 746
Query: 125 QA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDN 183
+ Y + H + ++ AP S ++ WE EF+ W D FY + +G + + A+ +
Sbjct: 747 YSLYKEGHSKGPFLVSAPLSTIINWEREFEMWAPD--FYVVT---YTGDKESRAIIRENE 801
Query: 184 RKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVF 238
V R K++ K T I F L++ EL I + G V
Sbjct: 802 FTFEDSAVKSGR--KVFRMKKDTPIK------FHVLLTSYELITIDQAILGSITWACLVV 853
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK 298
DE H +N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L +
Sbjct: 854 DEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLE 913
Query: 299 SGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
+ISK ++++K+L + + P + + +++P +V
Sbjct: 914 EFADISK------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIV 955
Query: 359 ILQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESF 404
++ QK+ K + ++F LN VSLL++ HP L P E+
Sbjct: 956 RVELSPMQKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAP 1014
Query: 405 DVDSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWR 463
+ + L +G T +L++L +VL+FSQ + L L+ + L
Sbjct: 1015 VLPNGSYDGNLLVKSSGKLTLLQKMLIKLKDGGHRVLIFSQMTKMLDLLEDFLEF----- 1069
Query: 464 EGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVW 523
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D W
Sbjct: 1070 EGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDW 1129
Query: 524 NPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
NP + QA SRA+R+GQ + V +Y +T ++E + RK+ +++V
Sbjct: 1130 NPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLV 1179
>gi|121714457|ref|XP_001274839.1| DNA repair protein Rhp26/Rad26, putative [Aspergillus clavatus NRRL
1]
gi|119402993|gb|EAW13413.1| DNA repair protein Rhp26/Rad26, putative [Aspergillus clavatus NRRL
1]
Length = 1221
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 140/547 (25%), Positives = 235/547 (42%), Gaps = 83/547 (15%)
Query: 62 VPRDVRKKMFPHQREGFEFIW---KNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
+P D+ +F +Q+ G +++W + GGI DE+ G GKT
Sbjct: 412 LPGDINPYLFDYQKTGVQWLWELYQQKVGGIIGDEM------------------GLGKTI 453
Query: 119 LTLVFLQAYMKLHPRCRPVII-APRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGA 177
T+ FL P+I+ P +++ W EF +W P + ++ SG
Sbjct: 454 QTIAFLAGLHYSKKLDGPIIVVCPATVMKQWVNEFHRW---WPPFRVSILHTSGS----- 505
Query: 178 VALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL-----SGILLDL 232
+++ R + L+ Y + T + ++ +++V + SGI
Sbjct: 506 -GMINIRNESSREDALLSQSYSYGSRALTSNQKAARKVVKRVVEEGHVLVTTYSGIQTYA 564
Query: 233 P-------GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
P G + DEGH RN +T + ++T R+ILSGTP QNN EL + V
Sbjct: 565 PFLIPVEWGCAILDEGHKIRNPNTSITIHCKELRTPHRVILSGTPMQNNLTELWSLFDFV 624
Query: 286 -RQEFGEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPFVNV 340
G ++ + I + +A+ + + +CA + LK+ I+P++
Sbjct: 625 FPMRLGTLVNFRNQFEFPIRQGGYANASNLQVQTAAKCA--------ETLKDAISPYLLQ 676
Query: 341 HKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV---EGVKSFV----ELNYCVSLLSV-- 391
+ LP V+ + + Q+ + E ++S + ++ Y V +L
Sbjct: 677 RFKIDVAADLPKKTEQVLFCKLTKSQREAYETFLRSEDMQSILKGRRQVLYGVDILRKIC 736
Query: 392 -HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEP 448
HP L + ES V R K + + LLEL T K L+F+Q+
Sbjct: 737 NHPDLQNHKL-ESHQVGYGNGNR-------SGKMQVVKSLLELWRDTGHKTLLFAQH--- 785
Query: 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEG 507
++++ L N G MDG ++ RQ+ ++ N DP+ + L +TK G
Sbjct: 786 -RIMLDILEKFVNSLSGFNHRRMDGTTPIQHRQAMVDEFNNDPN--LHVFLLTTKVGGLG 842
Query: 508 INLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567
+NL GA RV++ D WNP + QA RA+RLGQKR V VY L+T+ T+E RQ K
Sbjct: 843 VNLTGADRVIIYDPDWNPSTDVQARERAWRLGQKREVSVYRLMTAGTIEEKIYHRQIFKQ 902
Query: 568 WWSNMVF 574
+ +N +
Sbjct: 903 FLTNKIL 909
>gi|327288760|ref|XP_003229093.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3-like [Anolis
carolinensis]
Length = 2059
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 133/497 (26%), Positives = 226/497 (45%), Gaps = 76/497 (15%)
Query: 107 IISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLN 165
I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W + FY +
Sbjct: 816 ILADEMGLGKTIQTIVFLYSLYREGHTKGPFLVSAPLSTIINWEREFQMWAPN--FYVVT 873
Query: 166 KPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLSYRLF 216
+G +++ ++ + DN +G K ++ VK + +L SY L
Sbjct: 874 ---YTGDKDSRSIIREHEFSFEDNAMKGGKKAFKMKREAQVKFH-------VLLTSYELV 923
Query: 217 EKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQ 276
+ L+ I V DE H +N+ + F+ L+ K +++L+GTP QNN +
Sbjct: 924 --TIDQAALASIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLE 978
Query: 277 ELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP 336
EL + L+ + E L + +ISK ++++K+L + + P
Sbjct: 979 ELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHDLLGP 1020
Query: 337 FVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV 391
+ + +++P +V ++ QK+ K + ++F LN VSLL++
Sbjct: 1021 HMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVSLLNI 1079
Query: 392 ---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE------LSTN 436
HP L P E S KL + A IK+ L+LL+
Sbjct: 1080 MMDLKKCCNHPYLFPVAAME-----SPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQG 1134
Query: 437 EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI 496
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +Q
Sbjct: 1135 HRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGAQQFC 1189
Query: 497 MLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T ++E
Sbjct: 1190 FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1249
Query: 557 WDKLRRQARKVWWSNMV 573
+ RK+ +++V
Sbjct: 1250 ERITQVAKRKMMLTHLV 1266
>gi|440793758|gb|ELR14933.1| DNA repair and recombination protein RAD54B, putative [Acanthamoeba
castellanii str. Neff]
Length = 689
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 137/547 (25%), Positives = 238/547 (43%), Gaps = 94/547 (17%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F+++ G LK G G GCI++ G GKT + + +K
Sbjct: 160 PHQREGVKFLYECTMG------LK-----GPGRGCILADEMGLGKTLQAITLIWTLLKQG 208
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P P ++I P S+ W E K+W + L + + K+ L + +
Sbjct: 209 PNGTPASKKALVITPTSLTKNWYHEVKRWLGLERLHALVIGQAASKKEETLKVLDEFKTS 268
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRN 246
+ +I Y + +R+ + G ++GI L + DEGH +N
Sbjct: 269 PHRPLLIISYEQ--------------FRIHATFLQG--VAGI-----DLVICDEGHRLKN 307
Query: 247 DDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKA 306
D + K ++ ++TRRR+I++GTP QN+ +E ++ F ++ K R++
Sbjct: 308 ADARITKCINGLETRRRVIITGTPIQNDLEEFFTMVNFCNPGFMDL-----KKFRDV--- 359
Query: 307 KHASLISSIGRCANHRDDEKLKE------LKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
A+ I +GR N +KL+ L ++ F+ +L++ LP VV
Sbjct: 360 -FATPIV-LGRDPNATPQQKLESQSRSTALMKRTESFIIRRTKDLLRQYLPPRVEQVVFC 417
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVSL--LSVHP----------SLLPQQFFESFDVDS 408
+ Q L + L+ +SL L HP +LL Q E+ + +
Sbjct: 418 RLSSLQADLYRQYLRSTMAAALSCIISLRKLCNHPCAIFPKPEVITLLKLQMVEA-EPEM 476
Query: 409 AKLARLKLDPEAGIKTRF-------------LLILLELSTNEKVLVFSQYIEPLTLIMEQ 455
K+A L PE T LL ++ +T ++V++ S + + L +M+
Sbjct: 477 KKVA--ALFPEDFTATTHDIELSGKMEALDKLLGVIRTTTKDRVVIVSNFKQSLD-VMQT 533
Query: 456 LRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515
L + ++R + +DG +RQ+ ++ ND +S + G NLVG++R
Sbjct: 534 LCKKRSYR----FVRLDGSTPTGQRQNIVDHFNDQTSDYSGNV--------GFNLVGSNR 581
Query: 516 VVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFP 575
+VL D WNP + QA+ R +R GQK+ +Y ++ T+E +RQ K SN +
Sbjct: 582 IVLFDPDWNPANDAQAMGRVWRYGQKKKCWIYRFASTGTIEEKIFQRQVAKEGLSNAIMD 641
Query: 576 SSDGGGN 582
+S G+
Sbjct: 642 ASRMAGD 648
>gi|402219506|gb|EJT99579.1| hypothetical protein DACRYDRAFT_109677 [Dacryopinax sp. DJM-731
SS1]
Length = 1072
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 135/556 (24%), Positives = 225/556 (40%), Gaps = 94/556 (16%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT-----GLTLVF 123
K+ PHQREG F+++ + G G G I++ G GKT T+
Sbjct: 376 KLRPHQREGVIFMYEAVMG----------MRRHEGFGAILADEMGLGKTLQASSNKTIAL 425
Query: 124 LQAYMKLHPRCRP--------------VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPEL 169
L ++ P RP +I+ P S++ W E KW
Sbjct: 426 LWTLLRQTPY-RPREPIYHHKGEIGKAMIVCPVSLVGNWRSEIWKW-------------- 470
Query: 170 SGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGIL 229
G++ G + K +K + G +L + Y ++ S +
Sbjct: 471 LGRDRMGVFVAEETNK-----------IKQFLNSRGHDVLIIGYEKLRSVIDMLVYSDPM 519
Query: 230 LDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF 289
+DL + DEGH ++ + + + +KT+RRIILSGTP QN+ E +
Sbjct: 520 IDL---IICDEGHRLKSSNNKTSQMFTALKTKRRIILSGTPIQNDLSEFWSMAEFCNPGL 576
Query: 290 -GEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQE 348
G+ R + I +A+ + R +L FV +L
Sbjct: 577 LGQYNDFKRIYEQPIVRARAPNCTEKNKEIGEARS----SQLSSTAKSFVLRRTADILTS 632
Query: 349 SLPGLRHSVVILQPDEFQKRLCKAV-----------EGVKSFVELNYCVSLLSVHPSLL- 396
LP V ++P + Q L + V G+ +E+ + + P LL
Sbjct: 633 YLPPKYEYVAFIRPTKVQIDLMQRVLTSQAIGRALRNGMAQALEMMSILGKICTSPVLLK 692
Query: 397 -----PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS-----TNEKVLVFSQYI 446
P Q+ + ++L R + ++ + + ++ L T EKV+V SQ+
Sbjct: 693 TTAKPPSQWAPEYQEIVSRLPRHMEESDSSFSGKLIALMNLLDAVRKITEEKVIVVSQFT 752
Query: 447 EPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPS-SQARIMLASTKACC 505
+ L ++ E + + W + +DG +R S + N + ++ I L S KA
Sbjct: 753 KTLDVV-EAICTKMRWTRER----LDGTTPQNERDSRVQTFNRTNQAECFIFLLSLKAGG 807
Query: 506 EGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQAR 565
G+NLVGASR++LLD WNP + QA++R +R GQKR VH+Y +T T++ RQ
Sbjct: 808 VGLNLVGASRLILLDSSWNPAHDLQAMARIHRDGQKRPVHIYRFLTVGTIDEKVYMRQVI 867
Query: 566 KVWWSNMVFPSSDGGG 581
K + + + DG G
Sbjct: 868 K---TGLTLMAGDGDG 880
>gi|5917754|gb|AAD56022.1|AF181825_1 chromodomain helicase DNA binding protein 1 [Aegolius funereus]
Length = 918
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 133/501 (26%), Positives = 217/501 (43%), Gaps = 77/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W
Sbjct: 121 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWA----- 175
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
P++ N V L D R + ++ L + ++ IL +Y + K S
Sbjct: 176 -----PQM-----NAVVYLGD--ITSRNMIRTHEWMHLQTKRLKFNILLTTYEILLKDKS 223
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+ +EL +
Sbjct: 224 F--LGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSL 278
Query: 282 LSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
L + E F E GRE A L +++ PF+
Sbjct: 279 LHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHKELEPFL 316
Query: 339 NVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-----FVE 381
+++SLP LR + LQ ++ K L K +G S +E
Sbjct: 317 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 376
Query: 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLV 441
L C + H L+ F L L + + L++ +VL+
Sbjct: 377 LKKCCN----HCYLIKPPDGNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRERGNRVLI 431
Query: 442 FSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500
FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+ L S
Sbjct: 432 FSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSEDFCFLLS 485
Query: 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKL 560
T+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T ++E D L
Sbjct: 486 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL 545
Query: 561 RRQARKVWWSNMVFPSSDGGG 581
R +K+ ++V D G
Sbjct: 546 ERAKKKMVLDHLVIQRMDTTG 566
>gi|74149099|dbj|BAE32198.1| unnamed protein product [Mus musculus]
Length = 895
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 136/521 (26%), Positives = 228/521 (43%), Gaps = 80/521 (15%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 333 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 377
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 378 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 435
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 436 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 481
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 482 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 541
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 542 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 583
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+ +
Sbjct: 584 ELSPMQKKYYKYIL-TRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKM 642
Query: 407 DSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
+ L +G +L L +VL+FSQ + L L+ + L H EG
Sbjct: 643 PNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-----EG 697
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 698 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 757
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+ QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 758 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 797
>gi|257896952|ref|ZP_05676605.1| Snf2 family protein [Enterococcus faecium Com12]
gi|257833517|gb|EEV59938.1| Snf2 family protein [Enterococcus faecium Com12]
Length = 1067
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 133/532 (25%), Positives = 228/532 (42%), Gaps = 93/532 (17%)
Query: 45 QTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGN 104
QT H +G +L P+ + KM +Q++GF W + G
Sbjct: 591 QTMVQNLIHPEGYQAQL-PKGLNAKMREYQKQGFR--WLKMLGHYQF------------- 634
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNL 164
G I++ G GKT T+ FL + + +I+AP S++ W+ E KK+
Sbjct: 635 GGILADEMGLGKTLQTIAFLLSEKEERESFSALIVAPASLIYNWQAEVKKFA-------- 686
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
P LS + +++ K+ R ++ T I SY + ++ +
Sbjct: 687 --PSLS-------IQVINGNKKEREEL----------LAKDTDIRVTSYASLRQDLADYQ 727
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
I + DE +N T +AL + +R LSGTP +NN +EL + +
Sbjct: 728 SQKI-----DYLILDEAQMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLFAT 782
Query: 285 VRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAPFV 338
+ F + RE++ + A +I R R D++ LK+L EK + +
Sbjct: 783 IMPGFF----PTKTKFRELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYSAL 834
Query: 339 NVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQ 398
+ TV L +R + + + F+K + G+ ++ C P+
Sbjct: 835 TEEQKTVYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQI--CCD---------PR 883
Query: 399 QFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRH 458
F E + S KL ++K L++ +VL+FSQ+ LT++ E+L
Sbjct: 884 LFIEDYQGGSGKLEQVKD-----------LLVAAKENKRRVLLFSQFTGMLTILQEELAE 932
Query: 459 RFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVL 518
G Y+ G + R S ++ N + + + L S KA G+NL GA V+L
Sbjct: 933 L-----GISTFYLRGSTKPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTVIL 985
Query: 519 LDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
D+ WNP +E QA RA+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 986 YDLWWNPAIEEQAAGRAHRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1037
>gi|194874037|ref|XP_001973329.1| GG16034 [Drosophila erecta]
gi|190655112|gb|EDV52355.1| GG16034 [Drosophila erecta]
Length = 869
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 134/551 (24%), Positives = 229/551 (41%), Gaps = 96/551 (17%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM 128
K+ P Q EG ++ S G I++ G GKT T+VFL +
Sbjct: 240 KLHPFQMEGISWL---------------RYSWGQSIRTILADEMGLGKTIQTVVFLYSLF 284
Query: 129 KL-HPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV--------- 178
K H R +I P S L WE E + W + FY + G + + AV
Sbjct: 285 KEGHCRGPFLICVPLSTLTNWERELELWAPE--FYCIT---YGGSKTSRAVIRNNELSFD 339
Query: 179 -----ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP 233
+ +NR + + V L Y +Y + +LG ++D
Sbjct: 340 EITTKTMRENRAQYKFNVMLTSYEFIY---IDAPLLG------------------IIDW- 377
Query: 234 GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVL 293
+ V DE H +++ + F+ LS+ + +++L+GTP QNN +EL + L+ + + L
Sbjct: 378 AVLVVDEAHRLKSNHSKFFRTLSKYRIAYKLLLTGTPLQNNLEELFHLLNFLSSDKFNDL 437
Query: 294 RTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGL 353
T + ++SK +E++K L E + P + + +++P
Sbjct: 438 HTFQAEFADVSK------------------EEQVKRLHEILGPHMLRRLKADVLKNMPSK 479
Query: 354 RHSVVILQPDEFQKRLCKAV-------------EGVKSFVELNYCVSLLSVHPSLLPQQF 400
+V ++ QK+ K + GV S + + + HP L P
Sbjct: 480 SEFIVRVELSSMQKKFYKFILTKNFKALKQKGGGGVCSLLNIMMELRKCCNHPYLFPSA- 538
Query: 401 FESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQLRH 458
E + + L + +A K L +L+ + N +VL+FSQ + L ++
Sbjct: 539 AEDASISPSGLYEINSLIKASGKLELLSKMLKQLKADNHRVLIFSQMTKMLNIL-----E 593
Query: 459 RFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVL 518
F EG + +DG RQ +I+ N P ++ + L ST+A GINL A V++
Sbjct: 594 NFLEEEGYQYERIDGLIKGDLRQRAIDRFNAPKAEQFVFLLSTRAGGLGINLATADTVII 653
Query: 519 LDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
D WNP + QA SRA+R+GQ + V +Y +T ++E ++ K+ +++V
Sbjct: 654 FDSDWNPHNDVQAFSRAHRMGQTKKVMIYRFVTHNSVEERMMQVAKHKMMLTHLVVRPGM 713
Query: 579 GGGNDQTTASE 589
GG T E
Sbjct: 714 GGKEVNFTKDE 724
>gi|116179964|ref|XP_001219831.1| hypothetical protein CHGG_00610 [Chaetomium globosum CBS 148.51]
gi|88184907|gb|EAQ92375.1| hypothetical protein CHGG_00610 [Chaetomium globosum CBS 148.51]
Length = 1793
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 133/520 (25%), Positives = 217/520 (41%), Gaps = 123/520 (23%)
Query: 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLN 165
I++ G GKT + L ++++ P+ P +I+ P + W E KKW D+
Sbjct: 866 ILADEMGLGKTVQVVALLSSFIQDSPKVWPFLIVVPNATCANWRREIKKWAPDL------ 919
Query: 166 KPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225
R V Y ++ L L Y LF +
Sbjct: 920 -----------------------------RVVAYYGGRVSQS-LALQYELFPNGTKTMKA 949
Query: 226 SGILLDLPGL----------------FVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGT 269
+++ V DE +ND+ ++KAL ++ + +++L+GT
Sbjct: 950 HVVIMSYDSAKDNDTRLRFANTKWAGLVVDEAQALKNDENTLYKALHALRIQFKLLLTGT 1009
Query: 270 PFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKE 329
P QNN +EL N L + +VR E + A + S E L E
Sbjct: 1010 PLQNNKRELFNLLQFINP-------SVRA---ERLDEQFAQITS-----------ENLPE 1048
Query: 330 LKEKIAP-FVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV-----EGVKS----- 378
L I P F+ K VL LP + ++ + Q+RLCK++ E ++S
Sbjct: 1049 LHRLIRPYFLRRTKAEVLT-FLPPMAQIILPVSMTVLQERLCKSILERNPELIRSVFVQG 1107
Query: 379 -------------FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTR 425
++L C+ HP + Q + SA+L R L EA K
Sbjct: 1108 KMKAHERGSLSNILMQLRKCL----CHPFIYSQAIEDR--TTSAELTRRNL-VEASSKLM 1160
Query: 426 FLLILLEL--STNEKVLVFSQYIEPLTLIME-----QLRHRFNWREGQEVLYMDGKQDVK 478
L I+L +VL+FSQ+++ LT++ + LRH +DG Q
Sbjct: 1161 LLEIMLPKLKERGHRVLLFSQFLDQLTVLEDFLAGLGLRHE----------RLDGSQSSM 1210
Query: 479 KRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRL 538
++QS I+ N P S +ML ST+A GINL A V++LD WNP + QA+SRA+R+
Sbjct: 1211 EKQSKIDAFNAPDSDIFVMLLSTRAGGVGINLATADTVIILDPDWNPHQDIQALSRAHRI 1270
Query: 539 GQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
GQ++ V + L+T ++ E L+ +K+ +++ + D
Sbjct: 1271 GQRKKVLCFQLMTVDSAEEKILQIGRKKLALDHLLIETMD 1310
>gi|227552615|ref|ZP_03982664.1| Snf2 family helicase [Enterococcus faecium TX1330]
gi|227178241|gb|EEI59213.1| Snf2 family helicase [Enterococcus faecium TX1330]
Length = 1064
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 133/532 (25%), Positives = 228/532 (42%), Gaps = 93/532 (17%)
Query: 45 QTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGN 104
QT H +G +L P+ + KM +Q++GF W + G
Sbjct: 588 QTMVQNLIHPEGYQAQL-PKGLNAKMREYQKQGFR--WLKMLGHYQF------------- 631
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNL 164
G I++ G GKT T+ FL + + +I+AP S++ W+ E KK+
Sbjct: 632 GGILADEMGLGKTLQTIAFLLSEKEERESFSALIVAPASLIYNWQAEVKKFA-------- 683
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
P LS + +++ K+ R ++ T I SY + ++ +
Sbjct: 684 --PSLS-------IQVINGNKKEREEL----------LAKDTDIRVTSYASLRQDLADYQ 724
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
I + DE +N T +AL + +R LSGTP +NN +EL + +
Sbjct: 725 SQKI-----DYLILDEAQMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLFAT 779
Query: 285 VRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAPFV 338
+ F + RE++ + A +I R R D++ LK+L EK + +
Sbjct: 780 IMPGFF----PTKTKFRELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYSAL 831
Query: 339 NVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQ 398
+ TV L +R + + + F+K + G+ ++ C P+
Sbjct: 832 TEEQKTVYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQI--CCD---------PR 880
Query: 399 QFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRH 458
F E + S KL ++K L++ +VL+FSQ+ LT++ E+L
Sbjct: 881 LFIEDYQGGSGKLEQVKD-----------LLVAAKENKRRVLLFSQFTGMLTILQEELAE 929
Query: 459 RFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVL 518
G Y+ G + R S ++ N + + + L S KA G+NL GA V+L
Sbjct: 930 L-----GISTFYLRGSTKPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTVIL 982
Query: 519 LDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
D+ WNP +E QA RA+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 983 YDLWWNPAIEEQAAGRAHRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1034
>gi|365762059|gb|EHN03672.1| Rdh54p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 920
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 148/600 (24%), Positives = 258/600 (43%), Gaps = 78/600 (13%)
Query: 42 FDSQTGCDPFT---HAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNST 98
FD +P +A V +V V K + PHQREG +F++ + G + ++
Sbjct: 231 FDVDKIVNPLVMNKNAAAEVDVIVDPLVGKFLRPHQREGVKFMYDCLMG-LARPSFEDQN 289
Query: 99 STGGG---------NGCIISHAPGTGKTGLTLVFL----------------QAYMKLHPR 133
S +GC+++ G GKT +++ + Q+ + L
Sbjct: 290 SDAKSLVLENDSDISGCLLADDMGLGKTLMSITLIWTLIRQDPFASKVPCSQSGIPLSGL 349
Query: 134 CR-PVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVG 192
C+ +++ P +++ W+ EF KW NL++ G + L K+
Sbjct: 350 CKKTLVVCPVTLIGNWKREFGKW------LNLSRI--------GVLTLSSRNSPDMDKMA 395
Query: 193 LIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMF 252
+ ++K+ + +L + Y EKL+S E L L V DEGH +N + +
Sbjct: 396 VRNFLKV---QRTYQVLIIGY---EKLLSVSEELEKNKHLIDLLVCDEGHRLKNGASKIL 449
Query: 253 KALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGEVLRTVRKSGREISKAKHASL 311
L + +++++L+GTP QN+ E + + G R+ I++A+ +
Sbjct: 450 NTLKSLDVKKKLLLTGTPIQNDLNEFFTIIDFINPGVLGNFASFKRRFIIPITRARDTA- 508
Query: 312 ISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCK 371
+ + +EK KE+ E F+ ++L++ LP ++ +P + Q K
Sbjct: 509 -NRYNDDVLEKGEEKSKEMIEITKRFILRRTNSILEKYLPPKTDIILFCKPYDEQILAFK 567
Query: 372 AV-EGVK-SFVELNYCVSL--------LSVHPSLL-PQQFFESFDVDSAKLARLKLDPEA 420
+ +G + F L + SL + P L+ ++ S D+ +
Sbjct: 568 DILQGARLDFRRLTFSSSLGLITLLKKVCNSPGLIGSDSYYNSLIKDTQSQGSYSRSLNS 627
Query: 421 GIKTRFLLILLE---LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDV 477
G K + L+ LLE T EKV++ S Y + L +I E L + G +DG
Sbjct: 628 G-KLKVLMTLLEGIRKRTEEKVVIVSNYTQTLDII-ENLMNM----AGMSHCRLDGSIPA 681
Query: 478 KKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYR 537
K+R S + N + +L S K+ G+NL+GASR++L D WNP V+ QA+SR +R
Sbjct: 682 KQRDSIVTSFNRSPAIFGFLL-SAKSGGVGLNLIGASRLILFDNDWNPSVDLQAMSRIHR 740
Query: 538 LGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD----GGGNDQTTASEPLED 593
GQK +Y L+T+ ++ L+RQ K S S+ G ND E L+D
Sbjct: 741 DGQKNPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGDSETKNKGSSNDDLFNKEDLKD 800
>gi|257888157|ref|ZP_05667810.1| Snf2 family protein [Enterococcus faecium 1,141,733]
gi|257824211|gb|EEV51143.1| Snf2 family protein [Enterococcus faecium 1,141,733]
Length = 1067
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 133/532 (25%), Positives = 228/532 (42%), Gaps = 93/532 (17%)
Query: 45 QTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGN 104
QT H +G +L P+ + KM +Q++GF W + G
Sbjct: 591 QTMVQNLIHPEGYQAQL-PKGLNAKMREYQKQGFR--WLKMLGHYQF------------- 634
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNL 164
G I++ G GKT T+ FL + + +I+AP S++ W+ E KK+
Sbjct: 635 GGILADEMGLGKTLQTIAFLLSEKEERESFSALIVAPASLIYNWQAEVKKFA-------- 686
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
P LS + +++ K+ R ++ T I SY + ++ +
Sbjct: 687 --PSLS-------IQVINGNKKEREEL----------LAKDTDIRVTSYASLRQDLADYQ 727
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
I + DE +N T +AL + +R LSGTP +NN +EL + +
Sbjct: 728 SQKI-----DYLILDEAQMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLFAT 782
Query: 285 VRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAPFV 338
+ F + RE++ + A +I R R D++ LK+L EK + +
Sbjct: 783 IMPGFF----PTKTKFRELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYSAL 834
Query: 339 NVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQ 398
+ TV L +R + + + F+K + G+ ++ C P+
Sbjct: 835 TEEQKTVYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQI--CCD---------PR 883
Query: 399 QFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRH 458
F E + S KL ++K L++ +VL+FSQ+ LT++ E+L
Sbjct: 884 LFIEDYQGGSGKLEQVKD-----------LLVAAKENKRRVLLFSQFTGMLTILQEELAE 932
Query: 459 RFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVL 518
G Y+ G + R S ++ N + + + L S KA G+NL GA V+L
Sbjct: 933 L-----GISTFYLRGSTKPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTVIL 985
Query: 519 LDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
D+ WNP +E QA RA+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 986 YDLWWNPAIEEQAAGRAHRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1037
>gi|170584903|ref|XP_001897230.1| Type III restriction enzyme, res subunit family protein [Brugia
malayi]
gi|158595354|gb|EDP33914.1| Type III restriction enzyme, res subunit family protein [Brugia
malayi]
Length = 1595
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 124/499 (24%), Positives = 214/499 (42%), Gaps = 106/499 (21%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFY 162
N CI++ G GKT ++ FL Y K +++ P S + +W+ EF+ W
Sbjct: 475 NSCILADEMGLGKTIQSISFLSVLYHKYQLYGTFLVVVPLSTMASWQHEFETWA------ 528
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222
P+L+ G V D + ++ + W
Sbjct: 529 ----PDLNVVTYVGDVTSRD-----------LSFLGSFEW-------------------- 553
Query: 223 DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
+ DE H +ND++ ++++L T R++++GTP QN+ +EL L
Sbjct: 554 -----------AVLAVDEAHRLKNDESLLYRSLFEFTTNHRLLVTGTPLQNSLKELWALL 602
Query: 283 SLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHK 342
+ E + S E H S D + + L K+ PF+
Sbjct: 603 HFIMPEKFD-------SWSEFEAEHHDS------------DHKTIASLHRKLQPFLLRRV 643
Query: 343 GTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEG-VKSFVELNYCVSLL 389
+++SLP LR + Q ++ K L K V+G + FV L +
Sbjct: 644 KKDVEKSLPAKVEQILRVDMTAQQKQYYKWILTKNYKELSKGVKGSINGFVNLVMELKKC 703
Query: 390 SVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFS 443
H SL+ + + ++ + A+L +L +K+ LILL+ T +VL+FS
Sbjct: 704 CNHSSLV-RSYDQAEEGADARLQQL-------LKSSGKLILLDKLLCRLQETGHRVLIFS 755
Query: 444 QYIEPLTLIMEQLR-HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTK 502
Q + L ++ E L+ RF + +DG R+++++ N P+S L ST+
Sbjct: 756 QMVMMLDIMQEYLQLRRFPSQR------LDGSMRSDLRKAALDHFNAPNSPDFCFLLSTR 809
Query: 503 ACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRR 562
A GINL A V++ D WNP + QA+SRA+R+GQK+ V++Y L+T ++E + + R
Sbjct: 810 AGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQKKQVNIYRLVTKASVEEEIVER 869
Query: 563 QARKVWWSNMVFPSSDGGG 581
RK+ +++ D G
Sbjct: 870 AKRKLVLDHLIIQRMDTTG 888
>gi|302652597|ref|XP_003018145.1| hypothetical protein TRV_07841 [Trichophyton verrucosum HKI 0517]
gi|291181757|gb|EFE37500.1| hypothetical protein TRV_07841 [Trichophyton verrucosum HKI 0517]
Length = 1240
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 147/558 (26%), Positives = 229/558 (41%), Gaps = 103/558 (18%)
Query: 62 VPRDVRKKMFPHQREGFEFIW---KNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
+P D+ +F +Q+ G +++W + GGI DE+ G GKT
Sbjct: 402 LPGDIYPYLFDYQKTGVKWLWELYQQQVGGIIGDEM------------------GLGKTI 443
Query: 119 LTLVFLQAYMKLHPRCRPVIIA-PRSMLLTWEEEFKKWGIDIPF------------YNLN 165
+ FL P+I+ P +++ W EF +W PF N+
Sbjct: 444 QVIAFLAGIHYSKKLKGPIIVVCPPTVMKQWVNEFHRWWP--PFRVSILHTSGSGMVNIK 501
Query: 166 KPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225
+ V N RG R +K +L + L
Sbjct: 502 SESQAEDRYTSGVWGDRNSTSQRGNKAARRILKR--------VLEDGHVLVTTYAGLQTY 553
Query: 226 SGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
S +L+ + G+ V DEGH RN DT + ++T R+ILSGTP QNN EL +
Sbjct: 554 SSLLIPVDWGIAVLDEGHKIRNPDTSITIHCKELRTSHRLILSGTPMQNNLTELWSLFDF 613
Query: 285 V-----------RQEFGEVLRTVRKSGREISKAKHASL-ISSIGRCANHRDDEKLKELKE 332
V R +F +RT A ++L + + +CA + LK+
Sbjct: 614 VFPMRLGTLVNFRNQFEFPIRTG-------GYANASNLQVQTAAKCA--------ETLKD 658
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKA--VEGVKSFV-----ELNYC 385
I+P++ + LP V+ + + Q+ +A G S + E Y
Sbjct: 659 AISPYLLQRFKMDVAADLPKKSEQVLFCKLTKVQRAAYEAFLASGEMSSILRGRREALYG 718
Query: 386 VSLLSV---HPSLLPQQFFES-FDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKV 439
+ +L HP L + + D + A+ K + + LLEL T K
Sbjct: 719 IDMLRKICNHPDLTQHKILSTKTDYNYGSGAKSG-------KMQVVKSLLELWKDTGHKT 771
Query: 440 LVFSQYIEPLTLIMEQLR--HRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARI 496
L+F+Q+ L ++ +R FN+R MDG +K RQS ++ N DP +
Sbjct: 772 LLFAQHRIMLDILERFIRGFDGFNYRR------MDGNTPIKVRQSMVDEFNNDPD--LHV 823
Query: 497 MLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
L +TK G+NL GA RV++ D WNP + QA RA+RLGQKR V +Y L+T+ T+E
Sbjct: 824 FLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDVQARERAWRLGQKREVTIYRLMTAGTIE 883
Query: 557 WDKLRRQARKVWWSNMVF 574
RQ K + +N +
Sbjct: 884 EKIYHRQIFKQFLTNKIL 901
>gi|295671388|ref|XP_002796241.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284374|gb|EEH39940.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 999
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 154/551 (27%), Positives = 234/551 (42%), Gaps = 95/551 (17%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQREG F+++ + G + G G I++ G GKT T+ +
Sbjct: 328 KHLREHQREGVRFLYECVMGMRSFN----------GEGAILADEMGLGKTLQTIALIWTL 377
Query: 128 MKLHP--RCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+K +P PVI + P +++ W++EF+KW G E G
Sbjct: 378 LKQNPIYEAPPVIKKALIVCPVTLIDNWKKEFRKW--------------LGNERIGVFVA 423
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTG----ILGLSYRLFEKLVS-GDELS-GILLDLPG 234
R R L + MG I+G +E+L + +ELS G +D+
Sbjct: 424 DAKRTR------------LTDFTMGQSYSVMIIG-----YERLRTVQEELSKGSGIDI-- 464
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294
+ DEGH R +A+ + T +R+ILSGTP QN+ E + V +L
Sbjct: 465 -VIADEGHRMRTVQNKSAQAIQPLNTSKRVILSGTPIQNDLTEFFAMVDFVNPG---ILG 520
Query: 295 TVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP----FVNVHKGTVLQESL 350
T + K ++ S A RD EK K E++A F+ +L + L
Sbjct: 521 TFKM----FMKQFEGPIVKSQQPGALKRDIEKGKARSEELASLTSLFILRRTADLLSKYL 576
Query: 351 PGLRHSVVILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSVHPSLL-PQQ 399
P V+ P Q + + A+ S ++L + L PSLL P+
Sbjct: 577 PPKTEYVLFCNPTSSQANIYRHVLSSPVFQCALGNSDSALQLITILKKLCNSPSLLNPKS 636
Query: 400 FFE-SFDVDSAKLARL------KLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPL 449
E S S+ +A L +L P + K R L LL +T+EKV++ S Y L
Sbjct: 637 SDEDSTSTLSSLVASLPSSITRRLTPASSGKIRVLDQLLHNIRHTTSEKVVLISNYTSTL 696
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI-MLASTKACCEGI 508
L+ + L L +DG KRQ+ ++ N SS + L S KA G+
Sbjct: 697 DLLGKLLTSLS-----LSFLRLDGSTPAAKRQALVDDFNRSSSTSVFAFLLSAKAGGTGL 751
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NL+GASR+VL DV WNP + QA++R +R GQKR +Y + LE +RQ K+
Sbjct: 752 NLIGASRLVLFDVDWNPATDMQAMARIHRDGQKRHCRIYRFLLKGALEEKIWQRQVTKIG 811
Query: 569 WSNMVFPSSDG 579
++ V G
Sbjct: 812 LADSVMDQKSG 822
>gi|358339541|dbj|GAA47583.1| chromodomain-helicase-DNA-binding protein 4 [Clonorchis sinensis]
Length = 1670
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 143/522 (27%), Positives = 238/522 (45%), Gaps = 77/522 (14%)
Query: 99 STGGGNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGI 157
S G I++ G GKT T+ FL + Y + H R ++ AP S ++ WE EF+ W
Sbjct: 528 SYGNKVDTILADEMGLGKTIQTISFLYSLYKEGHSRGPFLVAAPLSTIINWEREFEFWAP 587
Query: 158 DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKV-GLIRYVKLYSWKMGTGILGLSYRLF 216
D+ + G +++ V G V G + ++L S G S R F
Sbjct: 588 DLYVVSY-----VGDKDSRTVIRQHEFSFDEGAVRGGSKAMRLRS--------GTSVR-F 633
Query: 217 EKLVSGDELSGILLDLPG-----LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPF 271
L++ EL I L G + V DE H +N+ + F+ L+ K +++L+GTP
Sbjct: 634 HVLLTSYELISIDQALLGSIDWEVLVVDEAHRLKNNQSKFFRILASYKIAYKLLLTGTPL 693
Query: 272 QNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELK 331
QNN +EL + L + E ++ +ISK +E++K+L
Sbjct: 694 QNNLEELFHLLHFMTPEKFHDMQGFLDEFADISK------------------EEQVKKLH 735
Query: 332 EKIAP-FVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYC----- 385
+ + + K VLQ ++P +V ++ QKR K + ++F L+ C
Sbjct: 736 DMLGQHLLRRLKADVLQ-NMPSKGEFIVRVELSPMQKRFYKFIL-TRNFEALS-CRSGGS 792
Query: 386 -VSLLSV---------HPSLLPQQFFES-------FDVDSAKLARLKLDPEAGIKTRFLL 428
VSL+++ HP L P E+ ++ ++ + A KL+ + ++ L
Sbjct: 793 NVSLINIMMDLKKCCNHPYLFPSASEEAPRLPNGAYEGNALRKASGKLE----LMSKMLR 848
Query: 429 ILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN 488
L + T +VL+FSQ + L L+ + F EG + +DG ++RQ +I+ N
Sbjct: 849 NLYD--TKHRVLIFSQMTKVLDLLED-----FLESEGYKFERIDGGITGQQRQDAIDRYN 901
Query: 489 DPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYH 548
P S + L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y
Sbjct: 902 APDSPSFAFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYR 961
Query: 549 LITSETLEWDKLRRQARKVWWSNMVF-PSSDGGGNDQTTASE 589
+T T+E + +K+ +++V P G G+ Q + E
Sbjct: 962 FVTRGTVEERVTQVAKKKMMLTHLVVRPGLGGKGSCQMSKKE 1003
>gi|341900249|gb|EGT56184.1| hypothetical protein CAEBREN_32223 [Caenorhabditis brenneri]
Length = 1816
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 136/518 (26%), Positives = 228/518 (44%), Gaps = 70/518 (13%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT +L FL MK H + +I AP S ++ WE E ++W D F
Sbjct: 637 GTDAILADEMGLGKTVQSLTFLYTLMKEGHCKGPFLIAAPLSTIINWEREAEQWCPD--F 694
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL 215
Y + G ++ V + ++ R K G ++ + M +L SY
Sbjct: 695 YVVT---YVGDRDSRVVLREHEFSFVEGAVRSGPKAGKMKTTE----NMKFHVLLTSYET 747
Query: 216 --FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQN 273
+K + LS I G V DE H +N+ + FK L+ R++L+GTP QN
Sbjct: 748 INMDKTI----LSSIEW---GALVVDEAHRLKNNQSLFFKNLNEYTIHYRVLLTGTPLQN 800
Query: 274 NFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEK 333
N +EL + L+ + E L EISK ++++++L
Sbjct: 801 NLEELFHLLNFLSAERFNQLEAFTAEFSEISK------------------EDQIEKLHNL 842
Query: 334 IAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVSL 388
+ P + + +P +V ++ QK+ K + ++F LN +SL
Sbjct: 843 LGPHMLRRLKADVLTGMPSKSELIVRVELSPMQKKWYKNI-LTRNFDALNVKNGGTQMSL 901
Query: 389 LSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----ST 435
++V HP L + E+ + L AG +F+L+ L
Sbjct: 902 MNVLMELKKCCNHPYLFAKASLEAPKEKNGMYEGTALIKNAG---KFVLLQKMLRKLKEQ 958
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
+VL+FSQ +T++++ + F EG + +DG + RQ +I+ N P +Q
Sbjct: 959 GHRVLIFSQ----MTMMLD-IMEDFCDVEGYKYERIDGSITGQMRQDAIDRYNAPGAQQF 1013
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
+ L ST+A GINL A V++ D WNP + QA SRA+RLGQK V +Y +T ++
Sbjct: 1014 VFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSV 1073
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLED 593
E +K+ +++V + GG ++ + L+D
Sbjct: 1074 EERITSVAKKKMLLNHLVVRAGLGGKEGKSMSKSELDD 1111
>gi|50309923|ref|XP_454975.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644110|emb|CAH00062.1| KLLA0E22617p [Kluyveromyces lactis]
Length = 1033
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 143/552 (25%), Positives = 241/552 (43%), Gaps = 72/552 (13%)
Query: 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
+VP D+ +FP+Q+ ++ L EL G G II G GKT
Sbjct: 256 MVPGDIFPLLFPYQKTCVQW----------LCELYQQ-----GCGGIIGDEMGLGKTIQI 300
Query: 121 LVFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKW------------------GIDIPF 161
+ FL PV ++ P +++ W EF W G IP
Sbjct: 301 IAFLATLHHSRKLNGPVLVVCPATVMKQWCNEFHTWWPPFRAVILHSIGAGMNKGTQIPE 360
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGL--IRYVKLYSWKMGTGILGLSYRLFEKL 219
L K ++ N G D K+ + + L + VK K+ ++ + +
Sbjct: 361 EELEKMLMTS--NYGTFTYNDYEKKEKTRTSLESRKSVK----KLLEKVITDGHIIITTY 414
Query: 220 VSGDELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
V S LL++ G + DEGH RN D+ + ++KT+ RIILSGTP QNN EL
Sbjct: 415 VGLRLHSEALLNVRWGYAILDEGHKIRNPDSDISLTCKQLKTQNRIILSGTPIQNNLTEL 474
Query: 279 ENTLSLVR-QEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPF 337
+ V + G + ++ I+ +A+ S+I ++ L++L I+P+
Sbjct: 475 WSLFDFVYPGKLGTLPVFQQQFANPINMGGYAN-ASNIQVKTGYKCAVALRDL---ISPY 530
Query: 338 VNVHKGTVLQESLPGLRHSVVILQPDEFQK----------RLCKAVEGVKSFVELNYCVS 387
+ + + + LP V+ + ++QK L K +G + + Y +
Sbjct: 531 LLRRVKSDVAKDLPKKNEMVLFCKLTQYQKSKYLEFLHSDELMKIRKGKRQVL---YGID 587
Query: 388 LLSV---HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFL--LILLELSTNEKVLVF 442
+L HP LL + + D + A +P K + + L+LL S K L+F
Sbjct: 588 ILRKICNHPDLLDLKRKKMNDYEDADYG----NPARSGKMQVVKQLLLLWHSQGHKTLLF 643
Query: 443 SQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTK 502
+Q + L ++ E + ++ + L MDG ++ RQS ++ N+ + L +T+
Sbjct: 644 TQSRQMLDILQEFISYKDPELSDLKFLRMDGTTNIGSRQSLVDKFNNEPYD--VFLLTTR 701
Query: 503 ACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRR 562
GINL GA+R+++ D WNP + QA RA+R+GQKR V +Y L+ + ++E R
Sbjct: 702 VGGLGINLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVTIYRLMIAGSIEEKIYHR 761
Query: 563 QARKVWWSNMVF 574
Q K + SN +
Sbjct: 762 QIFKQFLSNKIL 773
>gi|268567385|ref|XP_002639966.1| Hypothetical protein CBG10790 [Caenorhabditis briggsae]
Length = 1463
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 128/506 (25%), Positives = 220/506 (43%), Gaps = 88/506 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN I++ G GKT ++ L + + P +++ P S + W++EF +W DI
Sbjct: 436 GNSSILADEMGLGKTIQSISLLASLFHRYDLAGPYLVVVPLSTMAAWQKEFAQWAPDI-- 493
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
NL + M G V ++ Y W KM + +Y +
Sbjct: 494 -NL-------------IIYM-------GDVVSRDMIRQYEWFVGGTKKMKVNAILTTYEI 532
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
K D+ +D L V DE H +ND++ ++K L + + +++++GTP QN+
Sbjct: 533 LLK----DKAFLSSVDWAALLV-DEAHRLKNDESLLYKCLIQFRFNHKLLITGTPLQNSL 587
Query: 276 QELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIA 335
+EL L + E + + E +NH+ + L +K+
Sbjct: 588 KELWALLHFIMPEKFDCWEEFETAHNE----------------SNHKG---ISALHKKLE 628
Query: 336 PFVNVHKGTVLQESLPGLRHSVVILQPDEFQKR------------LCKAVEG-VKSFVEL 382
PF+ +++SLP ++ + QK+ L K V+G + FV L
Sbjct: 629 PFLLRRVKKDVEKSLPPKTEQILRVDMTAHQKQFYKWILTKNYRELSKGVKGSINGFVNL 688
Query: 383 NYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE------LSTN 436
+ H SL +Q+ +D +L +L +K+ LILL+
Sbjct: 689 VMELKKCCNHASLT-RQYDYIYDDAQGRLQQL-------LKSSGKLILLDKLLCRLRDKG 740
Query: 437 EKVLVFSQYIEPLTLIMEQLR-HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
+VL+FSQ + L ++ E L+ RF + +DG R+ +++ N P S
Sbjct: 741 HRVLIFSQMVMMLDILQEYLQLRRFPSQR------LDGSMRADLRKQALDHYNAPGSTDF 794
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
L ST+A GINL A V++ D WNP + QA+SRA+R+GQ + V++Y L+T ++
Sbjct: 795 AFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQTKTVNIYRLVTKGSV 854
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGG 581
E + + R RK+ ++V D G
Sbjct: 855 EEEIVERAKRKLVLDHLVIQRMDTTG 880
>gi|374601468|ref|ZP_09674468.1| SNF2 helicase associated domain-containing protein [Paenibacillus
dendritiformis C454]
gi|374392803|gb|EHQ64125.1| SNF2 helicase associated domain-containing protein [Paenibacillus
dendritiformis C454]
Length = 1125
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 145/524 (27%), Positives = 228/524 (43%), Gaps = 110/524 (20%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIA----GGIDLDELKNSTSTGGGNGCIISHAPGTGKT 117
VP ++ ++ +Q +GF+++ K +A GGI D++ G GKT
Sbjct: 663 VPDGLQAQLRDYQAQGFQWL-KMLAFYRFGGILADDM------------------GLGKT 703
Query: 118 GLTLVFL-------QAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPEL 169
++ ++ QA KL PV I++P S+ W E ++ P+L
Sbjct: 704 VQSIAYILSEREQEQAEEKL-----PVLIVSPSSLTYNWAHECARFA----------PQL 748
Query: 170 SGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGIL 229
V ++ +K+ R L++ G ++ SY L + + I
Sbjct: 749 R-------VLVVAGQKKERAA--------LWAEMEGADVIVTSYPLLRRDIE------IY 787
Query: 230 LDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE 288
+ P + DE +N + +A+S IK RR L+GTP +N+ EL + + V
Sbjct: 788 AEQPFHTLILDEAQAIKNASSQTAQAVSEIKAPRRFALTGTPIENSLDELWSIFNAVFPG 847
Query: 289 FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIA----PFVNVHKGT 344
L T +K+ RE+ + A ++ + L EL +KI P + +
Sbjct: 848 ----LFTNQKAFRELPADRVARIVRPF--ILRRLKKDVLTELPDKIESVQYPELATEQKK 901
Query: 345 VLQESLPGLRHSV-VILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFES 403
+ L L+H+ L+ + FQK K + G+ +L HP+L F E
Sbjct: 902 LYAAYLAKLKHTTEQDLKTEGFQKSRMKILAGITRLRQL-------CCHPAL----FVEG 950
Query: 404 FDVDSAKLARLKLDPEAGIKTRFLLILLELS-TNEKVLVFSQYIEPLTLIMEQLRHRFNW 462
+ S KL L E EL+ + +VL+FSQY L LI EQL
Sbjct: 951 YGGPSGKLQHLLEQVE------------ELTASGRRVLIFSQYSSMLQLIREQLES---- 994
Query: 463 REGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVV 522
G+ + Y+DG+ +R + N + +A + L S KA G+NL GA V+L D+
Sbjct: 995 -AGRTLFYLDGQTPAPERVDMCHRYN--AGEAELFLISLKAGGSGLNLTGADTVILYDLW 1051
Query: 523 WNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP VE QAI RA+R+GQKRVV V L+ T+E L Q RK
Sbjct: 1052 WNPAVEEQAIGRAHRMGQKRVVQVIRLVAEGTIEEKILELQQRK 1095
>gi|302509748|ref|XP_003016834.1| hypothetical protein ARB_05127 [Arthroderma benhamiae CBS 112371]
gi|291180404|gb|EFE36189.1| hypothetical protein ARB_05127 [Arthroderma benhamiae CBS 112371]
Length = 1220
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 146/557 (26%), Positives = 229/557 (41%), Gaps = 101/557 (18%)
Query: 62 VPRDVRKKMFPHQREGFEFIW---KNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
+P DV +F +Q+ G +++W + GGI DE+ G GKT
Sbjct: 382 LPGDVYPYLFDYQKTGVKWLWELYQQQVGGIIGDEM------------------GLGKTI 423
Query: 119 LTLVFLQAYMKLHPRCRPVII-APRSMLLTWEEEFKKWGIDIPF------------YNLN 165
+ FL P+I+ P +++ W EF +W PF N+
Sbjct: 424 QVIAFLAGIHYSKKLKGPIIVVCPPTVMKQWVNEFHRWWP--PFRVSILHTSGSGMVNIK 481
Query: 166 KPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225
+ V N RG R +K +L + L
Sbjct: 482 SESQAEDRYTSGVWGDRNSTTQRGNKAARRILKR--------VLEDGHVLVTTYAGLQTY 533
Query: 226 SGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
S +L+ + G+ V DEGH RN DT + ++T R+ILSGTP QNN EL +
Sbjct: 534 SSLLIPVDWGIAVLDEGHKIRNPDTSITIHCKELRTSHRLILSGTPMQNNLTELWSLFDF 593
Query: 285 V-----------RQEFGEVLRTVRKSGREISKAKHASL-ISSIGRCANHRDDEKLKELKE 332
V R +F +RT A ++L + + +CA + LK+
Sbjct: 594 VFPMRLGTLVNFRNQFEFPIRTG-------GYANASNLQVQTAAKCA--------ETLKD 638
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKA--VEGVKSFV-----ELNYC 385
I+P++ + LP V+ + + Q+ +A G S + E Y
Sbjct: 639 AISPYLLQRFKMDVAADLPKKSEQVLFCKLTKVQRAAYEAFLASGEMSSILRGRREALYG 698
Query: 386 VSLLSV---HPSLLPQQFFES-FDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKV 439
+ +L HP L + + D + A+ K + + LLEL T K
Sbjct: 699 IDMLRKICNHPDLTQHKILSTKTDYNYGSGAKSG-------KMQVVKSLLELWKDTGHKT 751
Query: 440 LVFSQYIEPLTLIMEQLR--HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
L+F+Q+ L ++ +R FN+R MDG +K RQS ++ N+ + +
Sbjct: 752 LLFAQHRIMLDILERFIRGFDGFNYRR------MDGNTPIKVRQSMVDEFNN-NPDLHVF 804
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L +TK G+NL GA RV++ D WNP + QA RA+RLGQKR V +Y L+T+ T+E
Sbjct: 805 LLTTKVGGLGVNLTGADRVIIYDPDWNPSTDVQARERAWRLGQKREVTIYRLMTAGTIEE 864
Query: 558 DKLRRQARKVWWSNMVF 574
RQ K + +N +
Sbjct: 865 KIYHRQIFKQFLTNKIL 881
>gi|26330021|dbj|BAC28749.1| unnamed protein product [Mus musculus]
Length = 1045
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 471 LHPYQMEGLNWLRFSWAQGTDT---------------ILADEMGLGKTVQTAVFLYSLYK 515
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 516 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 573
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 574 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 619
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 620 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 679
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 680 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 721
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 722 ELSPMQKKYYKYIL-TRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 777
Query: 407 DSAKLARLKLDPEAGIKTR------FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 778 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 833
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 834 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 890
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 891 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 935
>gi|384250118|gb|EIE23598.1| hypothetical protein COCSUDRAFT_47361 [Coccomyxa subellipsoidea
C-169]
Length = 1246
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 129/502 (25%), Positives = 229/502 (45%), Gaps = 76/502 (15%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP--VIIAPRSMLLTWEEEFKKWGIDIPF 161
N CI++ G GKT + F+ Y+ L + +++ P S + W EF+KW +P
Sbjct: 145 NNCILADEMGLGKTIQCVSFI-GYLSLWQQIAGPYLVVVPLSTVPNWIREFRKW---LP- 199
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
+ N V + D++ R +IR + Y+ K G Y+ F+ L++
Sbjct: 200 -----------QCNALVYVGDSKSRE-----VIRAFEFYTGKRS----GRMYK-FDVLIT 238
Query: 222 GDEL----SGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQ 276
EL + +L ++ V DE H +N+++ +++ L+ + + +++++GTP QN+ +
Sbjct: 239 TFELVLKDAAVLSEIKWSYLVVDEAHRLKNNESALYRELATWQFKNKLLVTGTPLQNSMK 298
Query: 277 ELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP 336
EL L L + E A+H+ + E+L +L ++ P
Sbjct: 299 ELWALLHF--------LEPSKFPNAEDFDARHSL-----------KKAEELTQLHTELRP 339
Query: 337 FVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYC------VSLLS 390
+ +++SLP ++ + QK+ K + ++F ELN +SLL+
Sbjct: 340 HLLRRVIKDVEKSLPPKNERILRVAMSPLQKQYYKWIL-TRNFKELNKGTKGGGQISLLN 398
Query: 391 V---------HPSLL--PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKV 439
+ HP L + F + DS + RL + + L+ L+ T +V
Sbjct: 399 IITELKKCCNHPFLFESAESDFRGSNDDSKAVDRLTVSAGKMVLLDKLMRRLK-ETGHRV 457
Query: 440 LVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
L+FSQ + L +I + +R R G + +DG +R ++ N P S L
Sbjct: 458 LIFSQMVRMLDIISDYMRLR-----GFQHQRLDGSTPAAQRHQAMEHFNAPGSTDFAFLL 512
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
ST+A GINL A V++ D WNP + QA+SRA+R+GQ V++Y +TS ++E D
Sbjct: 513 STRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQTETVNIYRFLTSGSVEEDI 572
Query: 560 LRRQARKVWWSNMVFPSSDGGG 581
L R +K+ ++V D G
Sbjct: 573 LERAKQKMVLDHLVIQRMDTSG 594
>gi|395334519|gb|EJF66895.1| hypothetical protein DICSQDRAFT_158547 [Dichomitus squalens LYAD-421
SS1]
Length = 1586
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 129/541 (23%), Positives = 232/541 (42%), Gaps = 86/541 (15%)
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGID---IPF 161
CI++ G GKT + F+ Y+ +C P +++ P S + W EF++W +PF
Sbjct: 636 CILADEMGLGKTVQIVTFI-GYIVSAFKCFPALVVVPNSTITNWVREFERWAPKLRVVPF 694
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL----FE 217
Y D + R +I+ +L+ + +G G Y + +E
Sbjct: 695 YG------------------DAKARE-----IIKKYELFHSRPTSGTTGAKYHVLVTTYE 731
Query: 218 KLVSGDELSGILLDLPG--LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
+ + E + P + V DEG ++D + +FK L +K++ RII++GTP NN
Sbjct: 732 TITNTKEFGPVFKSTPSWEMLVVDEGQRLKSDASLIFKRLKELKSKHRIIMTGTPLNNNI 791
Query: 276 QELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIA 335
+EL N ++ + + L + K E++ DE + +L ++
Sbjct: 792 RELFNLMNFLDPDEWADLEALSKQYEELT-------------------DELVADLHTRLK 832
Query: 336 P-FVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV-----EGVKSFVELNYCVSLL 389
P F+ K VLQ LP +V + QK + +++ + ++S E N S
Sbjct: 833 PYFLRRIKSEVLQ--LPPKNEVIVPVSMAPLQKEIYRSILSQNLDILRSLTEPNASSSKG 890
Query: 390 SVHPSLLPQQFFESFD-VDSAKLARLKLDPE-------------AGIKTRFLLILLE--L 433
+V + + + V L ++P+ A K R L +L
Sbjct: 891 NVTKTNMNNMLMQLRKCVQHPYLVSPNIEPKGLSPTETHERLIGASAKLRLLKTMLPKLR 950
Query: 434 STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQ 493
+ +VL+FSQ+ L +I + F EG L +DG RQ ++ N S
Sbjct: 951 ARGHRVLLFSQFAIALDIIED-----FLVGEGITYLRLDGNTKQADRQKGMDEFNKKDSD 1005
Query: 494 ARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553
I L +T+A GINL A V++ D +NP + QAI+RA+R GQ + V V+ L+ +
Sbjct: 1006 VFIYLLTTRAGGVGINLWSADTVIIFDPDFNPHQDLQAIARAHRYGQTKTVLVFKLMVKD 1065
Query: 554 TLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSETLINA 613
+ E ++ +K+ +++ D D++ + E ++ +L L+ ET+
Sbjct: 1066 SAEERIMQTGKKKLILDHLIVQKMD----DESGSREDVQSILLFGAKALFEETEETVARE 1121
Query: 614 I 614
+
Sbjct: 1122 V 1122
>gi|336267056|ref|XP_003348294.1| hypothetical protein SMAC_02791 [Sordaria macrospora k-hell]
gi|380091948|emb|CCC10214.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1667
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 127/489 (25%), Positives = 209/489 (42%), Gaps = 59/489 (12%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN I++ G GKT ++ FL + P +++AP S++ W + F W DI +
Sbjct: 479 GNNVILADEMGLGKTVQSVSFLSWLRNERGQEGPFLVVAPLSVIPAWCDTFNHWAPDINY 538
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
PE + +D + K +L SY L
Sbjct: 539 VVYLGPEAARSNIRDYELFVDGNPK----------------KTKFNVLVTSYDYI--LAD 580
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
D L I + DE H +N ++ ++ L+ +++++GTP QNN EL
Sbjct: 581 ADHLKNIKWQV---LAVDEAHRLKNRESQLYIKLNNFGVPCKVLITGTPIQNNLAELSAL 637
Query: 282 LS------LVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIA 335
L +V E E L T G + A I R EKL+EL + IA
Sbjct: 638 LDFLNPGKVVIDEELEALSTADSKGPTDEEQDEARRI---------RTQEKLRELHQSIA 688
Query: 336 PFVNVHKGTVLQESLPGLRHSVVILQPDEFQ------------KRLCKAVEGVKSFVELN 383
PF+ ++ LP ++ ++ + Q L A G K + LN
Sbjct: 689 PFILRRTKETVESDLPPKTEKIIRVELSDVQLDYYKNILTRNYAALSDASNGHKQSL-LN 747
Query: 384 YCVSL--LSVHPSLLPQQFFESFDVDSAKLARLK-LDPEAGIKTRFLLILLELSTN-EKV 439
+ L +S HP + + + + ++K L +G +L +L + +V
Sbjct: 748 IMMELKKVSNHPYMFQGAEERVLNGSTRREDQIKGLITSSGKMMLLDQLLAKLKKDGHRV 807
Query: 440 LVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
L+FSQ ++ L ++ + LR R G + +DG R+ +IN N S L
Sbjct: 808 LIFSQMVKMLDILGDYLRVR-----GYQFQRLDGTIPAGPRRMAINHFNAEGSDDFCFLL 862
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
ST+A GINL+ A V++ D WNP + QA++RA+R+GQKR V+VY L+ +T+E +
Sbjct: 863 STRAGGLGINLMTADTVIIYDSDWNPQADLQAMARAHRIGQKRPVNVYRLVAKQTIEEEV 922
Query: 560 LRRQARKVW 568
++R K++
Sbjct: 923 VKRARNKLF 931
>gi|355678680|gb|AER96183.1| chromodomain helicase DNA binding protein 4 [Mustela putorius furo]
Length = 1457
Score = 129 bits (324), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 645 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 689
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 690 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 747
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 748 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 793
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 794 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 853
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 854 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 895
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 896 ELSPMQKKYYKYIL-TRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 951
Query: 407 DSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 952 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 1007
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1008 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 1064
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1065 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1109
>gi|302811536|ref|XP_002987457.1| hypothetical protein SELMODRAFT_158748 [Selaginella moellendorffii]
gi|300144863|gb|EFJ11544.1| hypothetical protein SELMODRAFT_158748 [Selaginella moellendorffii]
Length = 1292
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 150/549 (27%), Positives = 236/549 (42%), Gaps = 91/549 (16%)
Query: 70 MFPHQREGFEFI---WKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA 126
+ P+Q EG F+ W+ G I++ G GKT T+ FL +
Sbjct: 269 LHPYQLEGLNFLRYAWQQ------------------GKPVILADEMGLGKTIQTISFLTS 310
Query: 127 YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYN-LNKPELSGKENNGAVALMDNRK 185
+ +I+AP S L WE EF W + + + L RK
Sbjct: 311 LLHEGVSLPHLIVAPLSTLRNWEREFSIWAPQMSIVTYIGSAQAREIIRQKEFFLPKERK 370
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTP 244
+GK R ++ +L SY ++V+ D S +L + + DEGH
Sbjct: 371 PEKGKKNASR-----QRRVKFNVLLTSY----EMVNTD--SAVLKPIKWECLIVDEGHRL 419
Query: 245 RNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREIS 304
+N D+ +F+ L T R++L+GTP QNN EL + + L + ++I
Sbjct: 420 KNKDSKLFQTLHNYSTYSRVLLTGTPLQNNLDELFTLMYFLDSSKFSSLEEFQLEFKDI- 478
Query: 305 KAKHASLISSIGRCANHRDDEKLKELKEKIAP-FVNVHKGTVLQESLPGLRHSVVILQPD 363
NH +E+++ L ++ + K VL+E LP + +V ++
Sbjct: 479 ---------------NH--EEQVQRLHTMLSSHLLRRVKKDVLKE-LPPKKELIVRVELS 520
Query: 364 EFQKRLCKAV-----------EGVKSFVELNYCVSLL---SVHPSLLPQQFFESFDVDSA 409
QK +AV GV+ V LN V L HP LL E+ D D+
Sbjct: 521 AIQKDYYRAVLTRNYEVLSRHSGVQ--VSLNNLVMELRKICAHPFLLDGVEEETEDEDAV 578
Query: 410 KLARLKLDPEAGIKTRFLLILLELSTN-----EKVLVFSQYIEPLTLIMEQLRHRFNWRE 464
+ K EA K LL+L +++T +VL++SQ+ L ++ + L ++ NW
Sbjct: 579 Q----KTLVEASGK---LLLLDKMTTKLKAEGHRVLIYSQFQRVLDILEDWLAYK-NWNY 630
Query: 465 GQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWN 524
+ +DGK RQS I+ N P S+ L ST+A GINL A VV+ D WN
Sbjct: 631 ER----IDGKVSGADRQSRIDRFNAPGSKIFCFLLSTRAGGLGINLATADTVVIYDSDWN 686
Query: 525 PFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQ 584
P + QA++RA+R+GQ V +Y LIT T+E ++ +K+ ++V G Q
Sbjct: 687 PHADMQAMARAHRMGQTSKVMIYRLITRGTIEERMMQLSKKKMVLEHLVV----GRMKTQ 742
Query: 585 TTASEPLED 593
E L+D
Sbjct: 743 ILNQEELDD 751
>gi|297791319|ref|XP_002863544.1| hypothetical protein ARALYDRAFT_917093 [Arabidopsis lyrata subsp.
lyrata]
gi|297309379|gb|EFH39803.1| hypothetical protein ARALYDRAFT_917093 [Arabidopsis lyrata subsp.
lyrata]
Length = 2251
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 138/538 (25%), Positives = 235/538 (43%), Gaps = 81/538 (15%)
Query: 63 PRDVRK-KMFPHQREGFEFI---WKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
P+++R +FPHQ E ++ W I DE+ G GKT
Sbjct: 684 PQELRGGALFPHQLEALNWLRRCWHKSKNVILADEM------------------GLGKTV 725
Query: 119 LTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGA 177
FL + RP +++ P S + W EF W P N+ + S K G
Sbjct: 726 SASAFLSSLYFEFGVARPCLVLVPLSTMPNWLSEFSLWA---PLLNVVEYHGSAK---GR 779
Query: 178 VALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFV 237
+ D R + G + Y + +L +Y + L L G+ ++ V
Sbjct: 780 AIIRDYEWRAKNPTGTTKKPTSYKF----NVLLTTYEMV--LADSSHLRGVPWEV---LV 830
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DEGH +N ++ +F L+ + R++L+GTP QNN E+ N L+ ++ L +
Sbjct: 831 VDEGHRLKNSESKLFSLLNTFSFQHRVLLTGTPLQNNIGEMYNLLNFLQPLSFPSLSSFE 890
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP-FVNVHKGTVLQESLPGLRHS 356
+ +++ A EK++ELK+ +AP + K +Q P
Sbjct: 891 ERFHDLTSA------------------EKVEELKKLVAPHMLRRLKKDAMQNIPPKTERM 932
Query: 357 VVI----LQPDEFQKRLCKAVE-------GVKSFVELNYCVSLLSV--HPSLLPQQFFES 403
V + +Q + ++ L K + GV LN + L V HP L+P ES
Sbjct: 933 VPVELTSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPES 992
Query: 404 FDVDSAKLARLKLDPEAGIKTRFLLILLELSTNE--KVLVFSQYIEPLTLIMEQLRHRFN 461
++ R+K A K L +L++ E +VL+FSQ + L ++ + L F
Sbjct: 993 GSLEFLHDMRIK----ASAKLTLLHSMLKVLQKEGHRVLIFSQMTKLLDILEDYLNIEFG 1048
Query: 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDV 521
+ + V DG V RQ++I N ++ + L ST+AC GINL A V++ D
Sbjct: 1049 PKTFERV---DGSVAVADRQAAIARFNQDKNRF-VFLLSTRACGLGINLATADTVIIYDS 1104
Query: 522 VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDG 579
+NP + QA++RA+R+GQ + + VY L+ ++E +++ + A+K + +F + G
Sbjct: 1105 DFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVE-ERILQLAKKKLMLDQLFVNKSG 1161
>gi|302796603|ref|XP_002980063.1| hypothetical protein SELMODRAFT_177985 [Selaginella moellendorffii]
gi|300152290|gb|EFJ18933.1| hypothetical protein SELMODRAFT_177985 [Selaginella moellendorffii]
Length = 1274
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 150/549 (27%), Positives = 236/549 (42%), Gaps = 91/549 (16%)
Query: 70 MFPHQREGFEFI---WKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA 126
+ P+Q EG F+ W+ G I++ G GKT T+ FL +
Sbjct: 269 LHPYQLEGLNFLRYAWQQ------------------GKPVILADEMGLGKTIQTISFLTS 310
Query: 127 YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYN-LNKPELSGKENNGAVALMDNRK 185
+ +I+AP S L WE EF W + + + L RK
Sbjct: 311 LLHEGVSLPHLIVAPLSTLRNWEREFSIWAPQMSIVTYIGSAQAREIIRQKEFFLPKERK 370
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTP 244
+GK R ++ +L SY ++V+ D S +L + + DEGH
Sbjct: 371 PEKGKKNASR-----QRRVKFNVLLTSY----EMVNTD--SAVLKPIKWECLIVDEGHRL 419
Query: 245 RNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREIS 304
+N D+ +F+ L T R++L+GTP QNN EL + + L + ++I
Sbjct: 420 KNKDSKLFQTLHNYSTYSRVLLTGTPLQNNLDELFTLMYFLDSSKFSSLEEFQLEFKDI- 478
Query: 305 KAKHASLISSIGRCANHRDDEKLKELKEKIAP-FVNVHKGTVLQESLPGLRHSVVILQPD 363
NH +E+++ L ++ + K VL+E LP + +V ++
Sbjct: 479 ---------------NH--EEQVQRLHTMLSSHLLRRVKKDVLKE-LPPKKELIVRVELS 520
Query: 364 EFQKRLCKAV-----------EGVKSFVELNYCVSLL---SVHPSLLPQQFFESFDVDSA 409
QK +AV GV+ V LN V L HP LL E+ D D+
Sbjct: 521 AIQKDYYRAVLTRNYEVLSRHSGVQ--VSLNNLVMELRKICAHPFLLDGVEEETEDEDAV 578
Query: 410 KLARLKLDPEAGIKTRFLLILLELSTN-----EKVLVFSQYIEPLTLIMEQLRHRFNWRE 464
+ K EA K LL+L +++T +VL++SQ+ L ++ + L ++ NW
Sbjct: 579 Q----KTLVEASGK---LLLLDKMTTKLKAEGHRVLIYSQFQRVLDILEDWLAYK-NWNY 630
Query: 465 GQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWN 524
+ +DGK RQS I+ N P S+ L ST+A GINL A VV+ D WN
Sbjct: 631 ER----IDGKVSGADRQSRIDRFNAPGSKIFCFLLSTRAGGLGINLATADTVVIYDSDWN 686
Query: 525 PFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQ 584
P + QA++RA+R+GQ V +Y LIT T+E ++ +K+ ++V G Q
Sbjct: 687 PHADMQAMARAHRMGQTSKVMIYRLITRGTIEERMMQLSKKKMVLEHLVV----GRMKTQ 742
Query: 585 TTASEPLED 593
E L+D
Sbjct: 743 ILNQEELDD 751
>gi|293571575|ref|ZP_06682597.1| Snf2 family protein [Enterococcus faecium E980]
gi|291608381|gb|EFF37681.1| Snf2 family protein [Enterococcus faecium E980]
Length = 1064
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 134/534 (25%), Positives = 224/534 (41%), Gaps = 97/534 (18%)
Query: 45 QTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGN 104
QT H +G +L P+ + KM +Q++GF W + G
Sbjct: 588 QTMVQDLIHPEGYQAQL-PKGLNAKMREYQKQGFR--WLKMLGHYQF------------- 631
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWG--IDIPFY 162
G I++ G GKT T+ FL + + +I+AP S++ W+ E KK+ ++I
Sbjct: 632 GGILADEMGLGKTLQTIAFLLSEKEERESFSALIVAPASLIYNWQAEVKKFAPSLNIQVI 691
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222
N NK E R+ K IR S +
Sbjct: 692 NGNKKE---------------REELLAKDTDIRVTSYASLR------------------- 717
Query: 223 DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
+L+ + DE +N T +AL + +R LSGTP +NN +EL +
Sbjct: 718 QDLADYQSQKIDYLILDEAQMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLF 777
Query: 283 SLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAP 336
+ + F + RE++ + A +I R R D++ LK+L EK +
Sbjct: 778 ATIMPGFF----PTKTKFRELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYS 829
Query: 337 FVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLL 396
+ + TV L +R + + + F+K + G+ ++ C
Sbjct: 830 ALTEEQKTVYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQI--CCD--------- 878
Query: 397 PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQL 456
P+ F E + S KL ++K L++ +VL+FSQ+ LT++ E+L
Sbjct: 879 PRLFIEDYQGGSGKLEQVKD-----------LLVAAKENKRRVLLFSQFTGMLTILQEEL 927
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
G Y+ G + R S ++ N + + + L S KA G+NL GA V
Sbjct: 928 AEL-----GISTFYLRGSTKPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTV 980
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
+L D+ WNP +E QA RA+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 981 ILYDLWWNPAIEEQAAGRAHRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1034
>gi|431064217|ref|ZP_19493564.1| Snf2 family protein [Enterococcus faecium E1604]
gi|431124670|ref|ZP_19498666.1| Snf2 family protein [Enterococcus faecium E1613]
gi|430566955|gb|ELB06043.1| Snf2 family protein [Enterococcus faecium E1613]
gi|430568858|gb|ELB07888.1| Snf2 family protein [Enterococcus faecium E1604]
Length = 1064
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 134/534 (25%), Positives = 224/534 (41%), Gaps = 97/534 (18%)
Query: 45 QTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGN 104
QT H +G +L P+ + KM +Q++GF W + G
Sbjct: 588 QTMVQDLIHPEGYQAQL-PKGLNAKMREYQKQGFR--WLKMLGHYQF------------- 631
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWG--IDIPFY 162
G I++ G GKT T+ FL + + +I+AP S++ W+ E KK+ ++I
Sbjct: 632 GGILADEMGLGKTLQTIAFLLSEKEERESFSALIVAPASLIYNWQAEVKKFAPSLNIQVI 691
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222
N NK E R+ K IR S +
Sbjct: 692 NGNKKE---------------REELLAKDTDIRVTSYASLR------------------- 717
Query: 223 DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
+L+ + DE +N T +AL + +R LSGTP +NN +EL +
Sbjct: 718 QDLADYQSQKIDYLILDEAQMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLF 777
Query: 283 SLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAP 336
+ + F + RE++ + A +I R R D++ LK+L EK +
Sbjct: 778 ATIMPGFF----PTKTKFRELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYS 829
Query: 337 FVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLL 396
+ + TV L +R + + + F+K + G+ ++ C
Sbjct: 830 ALTEEQKTVYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQI--CCD--------- 878
Query: 397 PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQL 456
P+ F E + S KL ++K L++ +VL+FSQ+ LT++ E+L
Sbjct: 879 PRLFIEDYQGGSGKLEQVKD-----------LLVAAKENKRRVLLFSQFTGMLTILQEEL 927
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
G Y+ G + R S ++ N + + + L S KA G+NL GA V
Sbjct: 928 AEL-----GISTFYLRGSTKPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTV 980
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
+L D+ WNP +E QA RA+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 981 ILYDLWWNPAIEEQAAGRAHRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1034
>gi|425054826|ref|ZP_18458328.1| protein, SNF2 family [Enterococcus faecium 505]
gi|403035135|gb|EJY46540.1| protein, SNF2 family [Enterococcus faecium 505]
Length = 1064
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 134/534 (25%), Positives = 223/534 (41%), Gaps = 97/534 (18%)
Query: 45 QTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGN 104
QT H +G +L P+ + KM +Q++GF W + G
Sbjct: 588 QTMVQDLIHPEGYQAQL-PKGLNAKMREYQKQGFR--WLKMLGHYQF------------- 631
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWG--IDIPFY 162
G I++ G GKT T+ FL + + +I+AP S++ W+ E KK+ + I
Sbjct: 632 GGILADEMGLGKTLQTIAFLLSEKEERESFSALIVAPASLIYNWQAEVKKFAPSLSIQVI 691
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222
N NK E R+ K IR S +
Sbjct: 692 NGNKKE---------------REELLAKDADIRVTSYASLR------------------- 717
Query: 223 DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
+L+ + DE +N T +AL + +R LSGTP +NN +EL +
Sbjct: 718 QDLADYQSQKIDYLILDEAQMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLF 777
Query: 283 SLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAP 336
+ + F + RE++ + A +I R R D++ LK+L EK +
Sbjct: 778 ATIMPGFF----PTKTKFRELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYS 829
Query: 337 FVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLL 396
+ + TV L +R + + + F+K + G+ ++ C
Sbjct: 830 ALTEEQKTVYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQI--CCD--------- 878
Query: 397 PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQL 456
P+ F E + S KL ++K L++ +VL+FSQ+ LT++ E+L
Sbjct: 879 PRLFIEDYQGGSGKLEQVKD-----------LLVAAKENKRRVLLFSQFTGMLTILQEEL 927
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
G Y+ G + R S ++ N + + + L S KA G+NL GA V
Sbjct: 928 AEL-----GISTFYLRGSTKPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTV 980
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
+L D+ WNP +E QA RA+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 981 ILYDLWWNPAIEEQAAGRAHRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1034
>gi|430840383|ref|ZP_19458308.1| Snf2 family protein [Enterococcus faecium E1007]
gi|431738618|ref|ZP_19527561.1| Snf2 family protein [Enterococcus faecium E1972]
gi|430495148|gb|ELA71355.1| Snf2 family protein [Enterococcus faecium E1007]
gi|430597346|gb|ELB35149.1| Snf2 family protein [Enterococcus faecium E1972]
Length = 1064
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 134/534 (25%), Positives = 224/534 (41%), Gaps = 97/534 (18%)
Query: 45 QTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGN 104
QT H +G +L P+ + KM +Q++GF W + G
Sbjct: 588 QTMVQDLIHPEGYQAQL-PKGLNAKMREYQKQGFR--WLKMLGHYQF------------- 631
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWG--IDIPFY 162
G I++ G GKT T+ FL + + +I+AP S++ W+ E KK+ ++I
Sbjct: 632 GGILADEMGLGKTLQTIAFLLSEKEERESFSALIVAPASLIYNWQAEVKKFAPSLNIQVI 691
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222
N NK E R+ K IR S +
Sbjct: 692 NGNKKE---------------REELLAKDTDIRVTSYASLR------------------- 717
Query: 223 DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
+L+ + DE +N T +AL + +R LSGTP +NN +EL +
Sbjct: 718 QDLADYQSQKIDYLILDEAQMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLF 777
Query: 283 SLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAP 336
+ + F + RE++ + A +I R R D++ LK+L EK +
Sbjct: 778 ATIMPGFF----PTKTKFRELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYS 829
Query: 337 FVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLL 396
+ + TV L +R + + + F+K + G+ ++ C
Sbjct: 830 ALTEEQKTVYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQI--CCD--------- 878
Query: 397 PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQL 456
P+ F E + S KL ++K L++ +VL+FSQ+ LT++ E+L
Sbjct: 879 PRLFIEDYQGGSGKLEQVKD-----------LLVAAKENKRRVLLFSQFTGMLTILQEEL 927
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
G Y+ G + R S ++ N + + + L S KA G+NL GA V
Sbjct: 928 AEL-----GISTFYLRGSTKPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTV 980
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
+L D+ WNP +E QA RA+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 981 ILYDLWWNPAIEEQAAGRAHRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1034
>gi|325188110|emb|CCA22651.1| chromodomainhelicaseDNAbinding protein putative [Albugo laibachii
Nc14]
Length = 1883
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 131/516 (25%), Positives = 236/516 (45%), Gaps = 64/516 (12%)
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKW-GIDIPFYN 163
CI++ G GKT L+ ++ P +I+ P S + W E + W +++ Y+
Sbjct: 906 CILADEMGLGKTIQVAAVLEHFVTEESIRGPFLIVVPLSTIQHWRRELQGWTDLNVCVYH 965
Query: 164 LNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL---FEKLV 220
++ ++N G N K R +IR + Y G + + L FE ++
Sbjct: 966 ----DIGDRQNRGF-----NSKDMRA---MIRMHEWYYPDRGNSSIFRFHALLTTFETIL 1013
Query: 221 SG-DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ +E I L + DE H ++ + + K + + R+++L+GTP QNN QEL
Sbjct: 1014 ADFEEFESIHWRL---LIVDEAHRLKSAGSRVLKQMRVLHCDRKLLLTGTPLQNNMQELW 1070
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVN 339
++ L V+ + E +AK GR +H E++ L++ +AP+V
Sbjct: 1071 VLINF--------LEPVKFASWEDFEAK-------FGRLQSH---EQVVTLQKLLAPYVL 1112
Query: 340 VHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV-------------EGVKSFVELNYCV 386
+++S+P +++ ++ QK+ +A+ G+ V + +
Sbjct: 1113 RRVKEDVEKSIPPKEETIIAVELTTLQKQYYRAIYDKNQSFLYRGIQNGLPRLVNIQLQL 1172
Query: 387 SLLSVHPSLLPQ-QFFESFDVDSAKLARLKLDPEAGIKTRFLLI--LLELSTNE--KVLV 441
HP L+ + E D+ +D +F+L+ LL E KVL+
Sbjct: 1173 RQCCNHPFLIKGVEDRELQDLGPEPTMDRIMDKTIQCSGKFVLVSKLLPKLKREGRKVLI 1232
Query: 442 FSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAST 501
FSQ+++ L L+ R+ G +DG + RQ+SI+ + P++++ + L ST
Sbjct: 1233 FSQFLKQLDLL-----ERYCEYHGFGYERLDGSTNGAARQASIDRFSRPNAKSFVFLLST 1287
Query: 502 KACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561
KA GINL+ A VV+ D WNP + QA SR +R+GQ + V +Y L+T T E +
Sbjct: 1288 KAGGVGINLIAADTVVIFDSDWNPQNDLQAQSRCHRIGQSKTVQIYRLVTRNTYESEMFE 1347
Query: 562 RQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILE 597
R ++K+ + V S G ND A++P ++++
Sbjct: 1348 RASQKLGLEHAVLGS--GSFNDGVQANKPSAQELVD 1381
>gi|431741456|ref|ZP_19530361.1| Snf2 family protein [Enterococcus faecium E2039]
gi|430601634|gb|ELB39228.1| Snf2 family protein [Enterococcus faecium E2039]
Length = 1064
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 134/534 (25%), Positives = 224/534 (41%), Gaps = 97/534 (18%)
Query: 45 QTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGN 104
QT H +G +L P+ + KM +Q++GF W + G
Sbjct: 588 QTMVQDLIHPEGYQAQL-PKGLNAKMREYQKQGFR--WLKMLGHYQF------------- 631
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWG--IDIPFY 162
G I++ G GKT T+ FL + + +I+AP S++ W+ E KK+ ++I
Sbjct: 632 GGILADEMGLGKTLQTIAFLLSEKEERESFSALIVAPASLIYNWQAEVKKFAPSLNIQVI 691
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222
N NK E R+ K IR S +
Sbjct: 692 NGNKKE---------------REELLAKDTDIRVTSYASLR------------------- 717
Query: 223 DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
+L+ + DE +N T +AL + +R LSGTP +NN +EL +
Sbjct: 718 QDLADYQSQKIDYLILDEAQMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLF 777
Query: 283 SLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAP 336
+ + F + RE++ + A +I R R D++ LK+L EK +
Sbjct: 778 ATIMPGFF----PTKTKFRELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYS 829
Query: 337 FVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLL 396
+ + TV L +R + + + F+K + G+ ++ C
Sbjct: 830 ALTEEQKTVYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQI--CCD--------- 878
Query: 397 PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQL 456
P+ F E + S KL ++K L++ +VL+FSQ+ LT++ E+L
Sbjct: 879 PRLFIEDYQGGSGKLEQVKD-----------LLVAAKENKRRVLLFSQFTGMLTILQEEL 927
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
G Y+ G + R S ++ N + + + L S KA G+NL GA V
Sbjct: 928 AEL-----GISTFYLRGSTKPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTV 980
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
+L D+ WNP +E QA RA+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 981 ILYDLWWNPAIEEQAAGRAHRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1034
>gi|410907027|ref|XP_003966993.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3-like [Takifugu
rubripes]
Length = 2102
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 133/495 (26%), Positives = 224/495 (45%), Gaps = 64/495 (12%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + K H + ++ AP S ++ WE EF+ W D F
Sbjct: 781 GTDTILADEMGLGKTIQTIVFLYSLFKEGHTKGPFLVSAPLSTIINWEREFEMWAPD--F 838
Query: 162 YNLNKPELSGKENNGAVALMDNR--------KRGRGKVGLIRYVKLYSWKMGTGILGLSY 213
Y + +G +++ A+ + +N K G+ L R + +L SY
Sbjct: 839 YVVT---YTGDKDSRAI-IRENEFCFDDTAVKAGKKTFKLRREAPI-----KFHVLLTSY 889
Query: 214 RLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQN 273
+LV+ D+ + ++ L V DE H +N+ + F+ L+ K +++L+GTP QN
Sbjct: 890 ----ELVTIDQTALKSIEWACLVV-DEAHRLKNNQSKFFRRLNDYKIDHKLLLTGTPLQN 944
Query: 274 NFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEK 333
N +EL + L+ + L + +ISK ++++K+L +
Sbjct: 945 NLEELFHLLNFLTPNRFNNLEGFLEEFADISK------------------EDQIKKLHDL 986
Query: 334 IAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVSL 388
+ P + + +++P +V ++ QK+ K + K+F LN VSL
Sbjct: 987 LGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKHI-LTKNFEALNSKGGGNQVSL 1045
Query: 389 LSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTN-EK 438
L++ HP L P E+ + L +G T +L +L +
Sbjct: 1046 LNIMMDLKKCCNHPYLFPAASMEAQKTPTGAYEGSALTKASGKLTLLQKMLRKLKEQGHR 1105
Query: 439 VLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498
VLVFSQ + L L+ + L H EG + +DG RQ +I+ N P + L
Sbjct: 1106 VLVFSQMTKMLDLLEDFLDH-----EGYKYERIDGGITGALRQEAIDRFNAPGACQFCFL 1160
Query: 499 ASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWD 558
ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T ++E
Sbjct: 1161 LSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEER 1220
Query: 559 KLRRQARKVWWSNMV 573
+ RK+ +++V
Sbjct: 1221 ITQVAKRKMMLTHLV 1235
>gi|428179712|gb|EKX48582.1| hypothetical protein GUITHDRAFT_68686, partial [Guillardia theta
CCMP2712]
Length = 524
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 139/531 (26%), Positives = 229/531 (43%), Gaps = 86/531 (16%)
Query: 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP 132
HQR+G +F+++ + G L+N GG GC+++ G GKT ++ L +
Sbjct: 6 HQRQGVQFMFECVTG------LRNF----GGYGCVLADDMGLGKTFQSVTLLWTLLTQGI 55
Query: 133 RCRPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG 187
+P I I P S++ W E KW L + + G +AL ++
Sbjct: 56 EGKPTITRAAVICPTSLVKNWANEITKW-------------LGDRLDGGVLALSES---A 99
Query: 188 RGKV--GLIRYVKLYSWKMGTG---ILGLSYRLFEKLVSGD---ELSGILLDLPGLFVFD 239
R V + RY + ++ +L +SY F ++ +G S I +
Sbjct: 100 REDVIDAINRYTRKGIYQRERKFPPVLIISYETF-RIHAGRFHCHTSAICCK------WT 152
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS 299
H +ND T KAL+ + RR++LSGTP QN+ +E ++V VL T
Sbjct: 153 RAHRLKNDKTITNKALASLPCLRRVLLSGTPMQNDLEEF---FAMVDFTNPGVLGT---- 205
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNV----HKGTVLQESLPGLRH 355
+ K + +++ A EK E + ++ VN+ +L + LP
Sbjct: 206 AAQFRKMYQSPILTGREPDATESQREKGNEAQGALSNLVNIFILRRTNELLSKHLPPKVV 265
Query: 356 SVVILQPDEFQKRLCKAVEGVKSFVELN-----------YCVSLLSV---HPSLL----- 396
+V + Q +L +A+ K + + C++ L HP L+
Sbjct: 266 QLVCCKLSPLQIQLYRAISSSKDVMRMCKGTGKTTKQVLACITSLKKLCNHPKLIFDVIR 325
Query: 397 ---PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIM 453
S+ V + + + + R L IL E++++ S Y + L L
Sbjct: 326 AAQSMPALSSYIVSELSVRLGQFSGKLAVLERMLHILYH-EKKERIVLISNYTQTLDLFQ 384
Query: 454 EQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
R N+ + +DG VKKRQ ++V NDP+ L S+KA G+NLVGA
Sbjct: 385 NICR-TCNY----PFVRLDGTTSVKKRQKLVDVFNDPTQHQFAFLLSSKAGGCGLNLVGA 439
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQA 564
SR+VL D WNP ++QA +R +R GQKR V Y ++ T+E +K R++A
Sbjct: 440 SRLVLFDPDWNPANDKQAAARIWRDGQKRRVFEYRFFSTGTIE-EKARKRA 489
>gi|355766839|gb|EHH62560.1| hypothetical protein EGM_20938, partial [Macaca fascicularis]
Length = 1262
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 136/531 (25%), Positives = 231/531 (43%), Gaps = 85/531 (16%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 52 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 96
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV------ALMD 182
+ H + ++ AP S ++ WE EF+ W D+ G +++ A+ + D
Sbjct: 97 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY-----VGDKDSRAIIRENEFSFED 151
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFV 237
N RG K R K S K F L++ EL I + + G +
Sbjct: 152 NAIRGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLI 197
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DE H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L
Sbjct: 198 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFL 257
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
+ +I+K ++++K+L + + P + + +++P +
Sbjct: 258 EEFADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELI 299
Query: 358 VILQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFES 403
V ++ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 300 VRVELSPMQKKYYKYIL-TRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA 358
Query: 404 FDVDSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNW 462
+ + L +G +L L +VL+FSQ + L L+ + L H
Sbjct: 359 PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH---- 414
Query: 463 REGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVV 522
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 415 -EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSD 473
Query: 523 WNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
WNP + QA SRA+R+GQ + V +Y +T ++E + +K+ +++V
Sbjct: 474 WNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLV 524
>gi|313676698|ref|YP_004054694.1| snf2-related protein [Marivirga tractuosa DSM 4126]
gi|312943396|gb|ADR22586.1| SNF2-related protein [Marivirga tractuosa DSM 4126]
Length = 976
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 134/519 (25%), Positives = 229/519 (44%), Gaps = 92/519 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P D ++ P+Q+EGF ++ + N + GG C+ G GKT TL
Sbjct: 510 MPEDFSGELRPYQKEGFNWL-----------QFLNQYNFGG---CLADDM-GLGKTVQTL 554
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
LQ+ + ++I P S++ W+ E +K+ PEL G +
Sbjct: 555 AMLQSEKESGRTAASLLIMPTSLVYNWQSEAEKFT----------PELKIFVYTGTNRIK 604
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
D+++ + L Y GI L + LS L + + DE
Sbjct: 605 DSKQFEDYDLILTSY----------GITRLDVEI---------LSEFLFN---YIILDES 642
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV------RQEF--GEVL 293
+N D+ + KA+ ++K+RR+++L+GTP +N+ +L + +S V ++F E +
Sbjct: 643 QAIKNPDSHIAKAVKKLKSRRKLVLTGTPVENSTMDLWSQMSFVNPGLLGNKKFFKDEFV 702
Query: 294 RTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG---TVLQESL 350
+ K E K A+LI + EL +KI NVH T+ +E
Sbjct: 703 TPIEKKRDEQKSQKLATLIKPF--ILRRHKSQVATELPDKIE---NVHYSGMTTMQEEKY 757
Query: 351 PGLRHSVVILQPDEFQKRLCKAVEGV--KSFVELNYCVSLLSVHPSLLPQQFFESFDVDS 408
+++ + DE +K+ ++ + + + +L + HP ++ + + DS
Sbjct: 758 EEVKNYFRDMILDEIEKKGIRSSQMILLQGLTQLRQIAN----HPKMVDPE----YQGDS 809
Query: 409 AKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEV 468
K+ + T L + +S KVL+FSQ+++ L+L E F R +
Sbjct: 810 GKMEDV---------THMLTSI--ISEGHKVLIFSQFVKHLSLFKE-----FMERSHIKY 853
Query: 469 LYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVE 528
Y+DG K RQ + + + + + L S KA G+NL A V LLD WNP +E
Sbjct: 854 AYLDGT--TKDRQKQVKLFQE-NQDLSVFLISLKAGGLGLNLTAADYVFLLDPWWNPAIE 910
Query: 529 RQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567
+QA+ RA+R+GQK+ V Y IT T+E L Q +K+
Sbjct: 911 QQAVDRAHRIGQKQQVFTYKFITKNTVEEKILALQEKKL 949
>gi|326427315|gb|EGD72885.1| hypothetical protein PTSG_12193 [Salpingoeca sp. ATCC 50818]
Length = 2049
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 125/484 (25%), Positives = 212/484 (43%), Gaps = 81/484 (16%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYN 163
N I++ G GKT + + + R + +++ P S + W+ EFK W DI
Sbjct: 1126 NSVILADEMGLGKTIQAISLISWMAHAYGRMQFLVVVPLSTCMNWQREFKLWAPDIVTV- 1184
Query: 164 LNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD 223
+G N + + +GK +V + SW++ + +
Sbjct: 1185 ----VYTGHSNARKMIEGFELPKVKGKPRF--HVIITSWEVA-------------MHNAS 1225
Query: 224 ELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS 283
L DL V DEGH +N + + + L+ + R++L+GTP QNN QEL N L
Sbjct: 1226 VLKHFAFDL---LVVDEGHRLKNAQSKLHRVLNSFACKHRVLLTGTPLQNNLQELYNLLK 1282
Query: 284 LVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
+ + +K K ++G +K+++L+ ++ P +
Sbjct: 1283 FL----------------DPAKFKDFEADPALGVEGMR---QKIEDLRPQLQPHLLRRTK 1323
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRL--------------CKAVEGVKSFV-ELNYCVSL 388
+ ++LP +V + QK+L K+ +G+KS + L C
Sbjct: 1324 ADVMKNLPKKVEVMVPCEMSHLQKQLYKHALEKNYTVLTNAKSKKGLKSLLTNLRKC--- 1380
Query: 389 LSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL------STNEKVLVF 442
S HP L F+ + L E +K L+L++ ++ +VL+F
Sbjct: 1381 -SNHPYL--------FEGTEPEFPTLDETMERLVKASGKLLLMDKMLTKLKASGHRVLIF 1431
Query: 443 SQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTK 502
SQ+ T +++ L F +R+ + +DG D+ R+ I N P+S L ST+
Sbjct: 1432 SQW----THVLDILEDLFVYRK-HKFYRLDGDTDILDREQRITDFNRPNSDVFAFLLSTR 1486
Query: 503 ACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRR 562
A GINL A V + D WNP ++ QAI+RA+R+GQKR+V VY L+ T++ +K+
Sbjct: 1487 AGGLGINLNTADTVFIYDSDWNPHMDNQAIARAHRIGQKRLVMVYRLVAKGTVD-EKIVE 1545
Query: 563 QARK 566
QARK
Sbjct: 1546 QARK 1549
>gi|281346162|gb|EFB21746.1| hypothetical protein PANDA_013140 [Ailuropoda melanoleuca]
Length = 1814
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 252/567 (44%), Gaps = 83/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 570 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 614
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 615 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 673
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 674 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 723
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ K L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 724 NNQP---KVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 780
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 781 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 822
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 823 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 876
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 877 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 931
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 932 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 991
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 992 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1051
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1052 TKQE-LDDILKFGTEELFKDDVEGMMS 1077
>gi|326471229|gb|EGD95238.1| DNA repair and recombination protein RAD26 [Trichophyton tonsurans
CBS 112818]
Length = 1225
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 147/558 (26%), Positives = 229/558 (41%), Gaps = 103/558 (18%)
Query: 62 VPRDVRKKMFPHQREGFEFIW---KNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
+P D+ +F +Q+ G +++W + GGI DE+ G GKT
Sbjct: 387 LPGDIYPYLFDYQKTGVKWLWELYQQQVGGIIGDEM------------------GLGKTI 428
Query: 119 LTLVFLQAYMKLHPRCRPVIIA-PRSMLLTWEEEFKKWGIDIPF------------YNLN 165
+ FL P+I+ P +++ W EF +W PF N+
Sbjct: 429 QVIAFLAGIHYSKKLKGPIIVVCPPTVMKQWVNEFHRWWP--PFRVSILHTSGSGMVNIK 486
Query: 166 KPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225
+ V N RG R +K +L + L
Sbjct: 487 SESQAEDRYTSGVWGDRNSTSQRGNKAARRILKR--------VLEDGHVLVTTYAGLQTY 538
Query: 226 SGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
S +L+ + G+ V DEGH RN DT + ++T R+ILSGTP QNN EL +
Sbjct: 539 SSLLIPVDWGIAVLDEGHKIRNPDTSITIHCKELRTSHRLILSGTPMQNNLTELWSLFDF 598
Query: 285 V-----------RQEFGEVLRTVRKSGREISKAKHASL-ISSIGRCANHRDDEKLKELKE 332
V R +F +RT A ++L + + +CA + LK+
Sbjct: 599 VFPMRLGTLVNFRNQFEFPIRTG-------GYANASNLQVQTAAKCA--------ETLKD 643
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKA--VEGVKSFV-----ELNYC 385
I+P++ + LP V+ + + Q+ +A G S + E Y
Sbjct: 644 AISPYLLQRFKMDVAADLPKKSEQVLFCKLTKVQRAAYEAFLASGEMSSILRGRREALYG 703
Query: 386 VSLLSV---HPSLLPQQFFES-FDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKV 439
+ +L HP L + + D + A+ K + + LLEL T K
Sbjct: 704 IDMLRKICNHPDLTQHKVLSTKTDYNYGSGAKSG-------KMQVVKSLLELWKDTGHKT 756
Query: 440 LVFSQYIEPLTLIMEQLR--HRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARI 496
L+F+Q+ L ++ +R FN+R MDG +K RQS ++ N DP +
Sbjct: 757 LLFAQHRIMLDILERFIRGFDGFNYRR------MDGNTPIKVRQSMVDEFNNDPD--LHV 808
Query: 497 MLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
L +TK G+NL GA RV++ D WNP + QA RA+RLGQKR V +Y L+T+ T+E
Sbjct: 809 FLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDVQARERAWRLGQKREVTIYRLMTAGTIE 868
Query: 557 WDKLRRQARKVWWSNMVF 574
RQ K + +N +
Sbjct: 869 EKIYHRQIFKQFLTNKIL 886
>gi|322791142|gb|EFZ15704.1| hypothetical protein SINV_11452 [Solenopsis invicta]
Length = 843
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 143/554 (25%), Positives = 233/554 (42%), Gaps = 95/554 (17%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM 128
K+ HQR G F+++ + G D G I++ G GKT + + +
Sbjct: 247 KLREHQRYGVVFLYECLMGLRVPDYF----------GAILADEMGLGKTLQCIALIWTML 296
Query: 129 KLHPRCRPV-----IIAPRSMLLTWEEEFKKW-GIDIPFYNLNKPELSGKENNGAVALMD 182
K P +P+ II P S+ WE+EF KW G F P + G +
Sbjct: 297 KKGPYGKPIVKRVLIITPSSLCNNWEKEFVKWLGSHRIF-----PYVVGAKTKPK----- 346
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
I+Y K ++ +SY +F K E++ I+ DL V DEGH
Sbjct: 347 ---------DFIKYPK-------NSVMIISYEMFIK--CHMEINEIVFDL---IVCDEGH 385
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N++ K L ++RIIL+GTP QN+ +E + + + + E
Sbjct: 386 RLKNNNVKAAKLLYEANCKKRIILTGTPIQNDLKEFYALIDFINP-------GILGTATE 438
Query: 303 ISKAKHASLISSIGRCANHRDD------EKLKELKEKIAPFVNVHKGTVLQESLPGLRHS 356
+++S +C + DD E+ EL E+ F+ + + + LP
Sbjct: 439 YKNYYEEPIVAS--QCPHANDDVLSLGKERSTELYERTKSFILRRTQSTINKYLPHKYEI 496
Query: 357 VVILQPDEFQKRLCKAVEGV---------KSFVELNYCVSLLSV--HPSLLPQQFFESF- 404
V+ + QK L V K+ + + ++L + HP+L +
Sbjct: 497 VLFCSLSKKQKDLYSLVTDAWFNKICLEDKNSMHFSIIIALKKICNHPNLFINEKENVLY 556
Query: 405 -DVDSAKLARLKLDP---EAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLI-----M 453
+ ++++K D E K L LL T+EK+++ S Y + L L+ M
Sbjct: 557 NALSKTCMSQIKQDNNFNEYCGKVTILQTLLRNLKKTDEKLVLVSYYTQTLDLLEIICDM 616
Query: 454 EQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
E+L+ L +DG R N + ++++L S KA G+NL GA
Sbjct: 617 EKLK----------FLRLDGSTPSSVRLKITEQFNTRTDNSKVLLLSAKAGGVGLNLPGA 666
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
SR+VL D WNP + QA++R +R GQKR V++Y L+T+ T+E +RQ K S V
Sbjct: 667 SRLVLFDSDWNPASDMQAMARIWRDGQKRNVYIYRLLTTGTIEEKIYQRQISKANLSESV 726
Query: 574 FPSSDGGGNDQTTA 587
+ G +TA
Sbjct: 727 VDLNHLGSLKLSTA 740
>gi|257899587|ref|ZP_05679240.1| Snf2 family protein [Enterococcus faecium Com15]
gi|257837499|gb|EEV62573.1| Snf2 family protein [Enterococcus faecium Com15]
Length = 1067
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 134/534 (25%), Positives = 224/534 (41%), Gaps = 97/534 (18%)
Query: 45 QTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGN 104
QT H +G +L P+ + KM +Q++GF W + G
Sbjct: 591 QTMVQDLIHPEGYQAQL-PKGLNAKMREYQKQGFR--WLKMLGHYQF------------- 634
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWG--IDIPFY 162
G I++ G GKT T+ FL + + +I+AP S++ W+ E KK+ ++I
Sbjct: 635 GGILADEMGLGKTLQTIAFLLSEKEERESFSALIVAPASLIYNWQAEVKKFAPSLNIQVI 694
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222
N NK E R+ K IR S +
Sbjct: 695 NGNKKE---------------REELLAKDTDIRVTSYASLR------------------- 720
Query: 223 DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
+L+ + DE +N T +AL + +R LSGTP +NN +EL +
Sbjct: 721 QDLADYQSQKIDYLILDEAQMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLF 780
Query: 283 SLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAP 336
+ + F + RE++ + A +I R R D++ LK+L EK +
Sbjct: 781 ATIMPGFF----PTKTKFRELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYS 832
Query: 337 FVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLL 396
+ + TV L +R + + + F+K + G+ ++ C
Sbjct: 833 ALTEEQKTVYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQI--CCD--------- 881
Query: 397 PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQL 456
P+ F E + S KL ++K L++ +VL+FSQ+ LT++ E+L
Sbjct: 882 PRLFIEDYQGGSGKLEQVKD-----------LLVAAKENKRRVLLFSQFTGMLTILQEEL 930
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
G Y+ G + R S ++ N + + + L S KA G+NL GA V
Sbjct: 931 AEL-----GISTFYLRGSTKPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTV 983
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
+L D+ WNP +E QA RA+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 984 ILYDLWWNPAIEEQAAGRAHRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1037
>gi|330932428|ref|XP_003303771.1| hypothetical protein PTT_16121 [Pyrenophora teres f. teres 0-1]
gi|311319996|gb|EFQ88126.1| hypothetical protein PTT_16121 [Pyrenophora teres f. teres 0-1]
Length = 1250
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 140/549 (25%), Positives = 237/549 (43%), Gaps = 85/549 (15%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P D+ +F +Q+ G +++W+ + + G II G GKT +
Sbjct: 408 IPGDIYPALFDYQKTGVQWLWELYSQNV---------------GGIIGDEMGLGKTIQAI 452
Query: 122 VFLQAYMKLHPRCRPVI-IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
F+ +PVI + P +++ W EF +W P ++ SG +
Sbjct: 453 GFVAGLHYSKKLTKPVIVVCPATVMKQWVNEFHRW---WPALRVSILHTSGS------GM 503
Query: 181 MDNRKRGR--GKVGLIRYVKLYSWKMGTGILGLSYRLFEKL----------VSGDELSGI 228
+D R+ R ++ L RY + G G + ++ EK+ SG +
Sbjct: 504 LDTRREDRLEQEMELRRYGDYDTTLTGAG--KAAKKVLEKVKRDGHVLVTTYSGLQTYAE 561
Query: 229 LLDLPGLF---VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
L +P + + DEGH RN +T + ++T RIILSGTP QNN EL + V
Sbjct: 562 FL-IPTEWECAILDEGHKIRNPNTAITIHCKELRTPNRIILSGTPMQNNLTELWSLFDFV 620
Query: 286 -RQEFGEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPFVNV 340
G ++ + I + +A+ + +CA + LK+ ++P++
Sbjct: 621 FPMRLGTLVNFRNQFEFPIKRGGYANASNLEFETAVQCA--------ETLKDAVSPYLLQ 672
Query: 341 HKGTVLQESLPGLRHSVVILQPDEFQKRLCK---AVEGVKSFV----ELNYCVSLLSV-- 391
+ LP + V+ + Q++ + A E +KS ++ + V L
Sbjct: 673 RFKVDVATDLPQKKEQVLFCKLTRQQRQAYEGFLASEDMKSIANGKRQMLFGVDFLRKIC 732
Query: 392 -HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQY--- 445
HP L + S K +P K + + LL L K L+F+Q+
Sbjct: 733 NHPDLTEHKTL------SKKPGYDYGNPNRSGKMQVVKELLSLWKKGGHKTLLFAQHRIM 786
Query: 446 IEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACC 505
++ L + QL NWR MDG+ +K RQ+ ++ N+ S + L +TK
Sbjct: 787 LDILQKFVSQLPD-INWRR------MDGETPIKDRQNLVDEFNN-SPDLHVFLLTTKVGG 838
Query: 506 EGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQAR 565
G+NL GA+RV++ D WNP + QA R++RLGQKR V +Y L+++ T+E RQ
Sbjct: 839 LGVNLTGANRVIIYDPDWNPSTDIQARERSWRLGQKREVEIYRLMSAGTIEEKIYHRQIF 898
Query: 566 KVWWSNMVF 574
K + +N V
Sbjct: 899 KQFLTNKVL 907
>gi|256052547|ref|XP_002569826.1| chromodomain helicase DNA binding protein [Schistosoma mansoni]
gi|353229870|emb|CCD76041.1| putative chromodomain helicase DNA binding protein [Schistosoma
mansoni]
Length = 1966
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 149/547 (27%), Positives = 242/547 (44%), Gaps = 86/547 (15%)
Query: 99 STGGGNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGI 157
S G I++ G GKT T+ FL + Y + H R ++ AP S ++ WE EF+ W
Sbjct: 808 SFGNKIDTILADEMGLGKTIQTIAFLYSLYKEGHCRGPFLVAAPLSTIINWEREFEFWAP 867
Query: 158 DIPFYN----------LNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTG 207
D+ + + + E S E GAV RG K + KM TG
Sbjct: 868 DLYVVSYIGDKDSRTVIREHEFSFDE--GAV-------RGGAK----------AMKMRTG 908
Query: 208 ILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDEGHTPRNDDTCMFKALSRIKTRR 262
S R F L++ EL I L G + V DE H +N+ + F+ L+ K
Sbjct: 909 T---SVR-FHVLLTSYELISIDQALLGSIDWEVLVVDEAHRLKNNQSKFFRILTTYKIGY 964
Query: 263 RIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHR 322
+++L+GTP QNN +EL + L + E ++ +ISK
Sbjct: 965 KLLLTGTPLQNNLEELFHLLHFMTPEKFNDMQGFLDEFADISK----------------- 1007
Query: 323 DDEKLKELKEKIAP-FVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVE 381
+E++K+L + + + K VLQ+ +P +V ++ QKR K + ++F
Sbjct: 1008 -EEQVKKLHDMLGQHLLRRLKADVLQD-MPSKGEFIVRVELSPMQKRYYKFIL-TRNFEA 1064
Query: 382 LNYC------VSLLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAG---IK 423
L+ C VSL+++ HP L P E+ + + + L +G +
Sbjct: 1065 LS-CRSGGSQVSLINIMMDLKKCCNHPFLFPSAAEEAQRMPNGAYEGVGLRKGSGKLELM 1123
Query: 424 TRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSS 483
++ L L E T +VL+FSQ + L L+ + F EG + +DG + RQ +
Sbjct: 1124 SKMLRKLYE--TKHRVLIFSQMTKMLDLLED-----FLDSEGYKFERIDGAVTGQLRQDA 1176
Query: 484 INVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRV 543
I+ N P S + L ST+A GINL A V++ D WNP + QA SRA+R+GQ
Sbjct: 1177 IDRFNAPDSLSFAFLLSTRAGGLGINLASADTVIIYDSDWNPHNDIQAFSRAHRIGQSNK 1236
Query: 544 VHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLY 603
V +Y +T T+E + +K+ +++V GG + + L+D + L+
Sbjct: 1237 VMIYRFVTRGTVEERVTQVAKKKMMLTHLVVRPGLGGKGSCQMSKKELDDILKFGTEDLF 1296
Query: 604 NNPSETL 610
E++
Sbjct: 1297 KEGEESM 1303
>gi|258577009|ref|XP_002542686.1| hypothetical protein UREG_02202 [Uncinocarpus reesii 1704]
gi|237902952|gb|EEP77353.1| hypothetical protein UREG_02202 [Uncinocarpus reesii 1704]
Length = 1203
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 164/621 (26%), Positives = 255/621 (41%), Gaps = 122/621 (19%)
Query: 62 VPRDVRKKMFPHQREGFEFIW---KNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
+P D+ +F +Q+ G +++W + GGI DE+ G GKT
Sbjct: 394 IPGDIYPYLFDYQKTGVQWLWELHQQRVGGIIGDEM------------------GLGKTI 435
Query: 119 LTLVFLQAYMKLHPRCRPVIIA-PRSMLLTWEEEFKKWGIDIPFYNLNKPELSG------ 171
+ FL PVI+ P +++ W EF +W P ++ SG
Sbjct: 436 QVIAFLAGLHYSKKLTGPVIVVCPPTVMKQWVNEFHRW---WPPLRVSILHTSGSGMVNI 492
Query: 172 -KENNGAVALMD--------NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222
KE+ LM R G G+ G R +K +L + L
Sbjct: 493 KKESYAEDRLMSEIWEPDRPTRLPG-GQKGARRILKR--------VLEDGHVLITTYAGL 543
Query: 223 DELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
+ +L+ + + DEGH RN DT + ++T R+ILSGTP QNN EL +
Sbjct: 544 QTYASLLIPVDWSCAILDEGHKIRNPDTAITIHCKELRTAHRLILSGTPMQNNLTELWSL 603
Query: 282 LSLV-----------RQEFGEVLRTVRKSGREISKAKHASL-ISSIGRCANHRDDEKLKE 329
V R +F +RT A ++L + + +CA +
Sbjct: 604 FDFVFPMRLGTLVNFRNQFEFPIRTG-------GYANASNLQVQTAAKCA--------ET 648
Query: 330 LKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN------ 383
LK+ I+P++ + LP V+ + Q+ +A G +
Sbjct: 649 LKDAISPYLLQRFKIDVAADLPKKTEQVLFCKLTRVQRAAYEAFLGSNEMASIMRGRRDV 708
Query: 384 -YCVSLLSV---HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKV 439
Y V +L HP L P+ S D + +K +K+ LI L T K
Sbjct: 709 LYGVDILRKICNHPDL-PEHRTLSQKSDYNYGSGVKSGKMQVVKS---LIELWKETGHKT 764
Query: 440 LVFSQY---IEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQAR 495
L+F+Q+ ++ L M+ L FN+R MDG +K RQS ++ N DP
Sbjct: 765 LLFAQHRIMLDILEKFMKSLPG-FNYRR------MDGNTPIKIRQSIVDEFNTDPD--IH 815
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
+ L +TK G+NL GA RV++ D WNP + QA RA+RLGQKR V +Y L+T+ T+
Sbjct: 816 VFLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDLQARERAWRLGQKREVTIYRLMTAGTI 875
Query: 556 EWDKLRRQARKVWWSNMV---------FPSSD-----GGGNDQTTASEPLEDKILEEMAQ 601
E RQ K + +N + F SD GND T + ++ ++
Sbjct: 876 EEKIYHRQIFKQFLTNKILKDPKQRQTFQMSDLHDLFTLGNDGPTETS----RLFQDADV 931
Query: 602 LYNNPSETLINAIIPQPKETE 622
+N +++ A PQP +TE
Sbjct: 932 TFNEGNDSAKAAEKPQPVQTE 952
>gi|292630870|sp|A6ZL17.1|RDH54_YEAS7 RecName: Full=DNA repair and recombination protein RDH54; AltName:
Full=RAD homolog 54; AltName: Full=Recombination factor
TID1; AltName: Full=Two hybrid interaction with DMC1
protein 1; Includes: RecName: Full=DNA topoisomerase;
Includes: RecName: Full=Putative helicase
gi|151946464|gb|EDN64686.1| rad54-like protein [Saccharomyces cerevisiae YJM789]
Length = 924
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 144/568 (25%), Positives = 247/568 (43%), Gaps = 75/568 (13%)
Query: 72 PHQREGFEFIWKNIAG-------GIDLDELKNS---TSTGGGNGCIISHAPGTGKTGLTL 121
PHQREG +F++ + G D+D S + +GC+++ G GKT +++
Sbjct: 264 PHQREGVKFMYDCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLMSI 323
Query: 122 VFL----------------QAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNL 164
+ Q+ + L C+ + ++ P +++ W+ EF KW NL
Sbjct: 324 TLIWTLIRQTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGNWKREFGKW------LNL 377
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
++ G + L K+ + ++K+ + +L + Y EKL+S E
Sbjct: 378 SRI--------GVLTLSSRNSPDMDKMAVRNFLKV---QRTYQVLIIGY---EKLLSVSE 423
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
L + V DEGH +N + + L + RR+++L+GTP QN+ E +
Sbjct: 424 ELEKNKHLIDMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDF 483
Query: 285 VRQE-FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
+ G R+ I++A+ + + + +E+ KE+ E F+
Sbjct: 484 INPGILGSFASFKRRFIIPITRARDTA--NRYNEELLEKGEERSKEMIEITKRFILRRTN 541
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAV-EGVK-SFVELNYCVSL--------LSVHP 393
+L++ LP ++ +P Q K + +G + F +L + SL + P
Sbjct: 542 AILEKYLPPKTDIILFCKPYSQQILAFKDILQGARLDFGQLTFSSSLGLITLLKKVCNSP 601
Query: 394 SLLPQQ-FFESFDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPL 449
L+ +++S D+ +G K R L+ LLE T EKV+V S Y + L
Sbjct: 602 GLVGSDPYYKSHIKDTQSQDSYSRSLNSG-KLRVLMTLLEGIRKGTKEKVVVVSNYTQTL 660
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509
+I E L + G +DG K+R S + N + +L S K+ G+N
Sbjct: 661 DII-ENLMNM----AGMSHCRLDGSIPAKQRDSIVTSFNRNPAIFGFLL-SAKSGGVGLN 714
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
LVGASR++L D WNP V+ QA+SR +R GQK+ +Y L+T+ ++ L+RQ K
Sbjct: 715 LVGASRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSL 774
Query: 570 SNMVFPSSD----GGGNDQTTASEPLED 593
S S+ ND E L+D
Sbjct: 775 SQKFLGDSEMRNKESSNDDLFNKEDLKD 802
>gi|307177261|gb|EFN66439.1| DNA repair and recombination protein RAD54B [Camponotus floridanus]
Length = 845
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 142/554 (25%), Positives = 233/554 (42%), Gaps = 94/554 (16%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM 128
K+ HQR G F+++ + G D G I++ G GKT + + +
Sbjct: 262 KLREHQRYGIVFLYECLMGLKVPDYF----------GAILADEMGLGKTLQCITLIWTML 311
Query: 129 KLHPRCRPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDN 183
K P +P+ II PRS+ W++EF+KW + + ++ + GK N
Sbjct: 312 KKGPYGKPIVRRVLIITPRSLCNNWDKEFRKW---LGCHRISPYVVDGK----------N 358
Query: 184 RKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHT 243
R + I++ + +L +SY + K S E+ I D L V DEGH
Sbjct: 359 RPK-----DFIKHPR-------NSVLIISYEMLVK--SHVEIKEITFD---LLVCDEGHR 401
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREI 303
+N + K L I ++RI+L+GTP QN+ +E + V + S E
Sbjct: 402 LKNSNIKAAKLLHEINCKKRIMLTGTPIQNDLKEFYTLVDFVNP-------GILGSPLEY 454
Query: 304 SKAKHASLISSIGRCANHRDD------EKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
+++S +C N + E+ EL E+ F+ + + LP V
Sbjct: 455 KNYYEDPIVAS--QCPNADKNVLSLGSERATELHERTKSFILRRTQNTINKYLPCKYEIV 512
Query: 358 VILQPDEFQKRLCKAVEGV---------KSFVELNYCVSLLSV--HPSLLPQQFFESF-D 405
+ Q L V K+ L+ ++L + HP+L + +
Sbjct: 513 LFCSLTSEQMDLYSLVTDAWFNKTCLQDKNHTHLSIIIALKKICNHPNLFINDKENTLRE 572
Query: 406 VDSAKLARLKLDPEAGI-----KTRFLLILLE--LSTNEKVLVFSQYIEPLTLI-----M 453
S + ++L + K L +L+ T+EK+++ S Y + L L +
Sbjct: 573 TLSKAICTIQLKQDKNFIKYCGKITILQVLMRNLKKTDEKLVLVSYYTQTLDLFETICNI 632
Query: 454 EQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
E+L+ L +DG R I N S ++I+L S KA G+NL GA
Sbjct: 633 EELK----------FLRLDGTISSSTRSKIIEQFNTRSDNSKILLLSAKAGGVGLNLPGA 682
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
SR+VL D WNP + QA++R +R GQK+ V++Y L+T+ T+E +RQ K S V
Sbjct: 683 SRLVLFDSDWNPASDVQAMARIWRDGQKKNVYIYRLLTTGTIEEKIYQRQISKASLSESV 742
Query: 574 FPSSDGGGNDQTTA 587
+ G +TA
Sbjct: 743 VDLNHLGSLKLSTA 756
>gi|351715692|gb|EHB18611.1| Chromodomain-helicase-DNA-binding protein 4 [Heterocephalus glaber]
Length = 1912
Score = 128 bits (322), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 726 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 770
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 771 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 828
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 829 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 874
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 875 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 934
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 935 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 976
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 977 ELSPMQKKYYKYIL-TRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 1032
Query: 407 DSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 1033 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 1088
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1089 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 1145
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1146 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1190
>gi|403303237|ref|XP_003942247.1| PREDICTED: chromodomain-helicase-DNA-binding protein 4 [Saimiri
boliviensis boliviensis]
Length = 1888
Score = 128 bits (321), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 136/521 (26%), Positives = 228/521 (43%), Gaps = 80/521 (15%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 726 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 770
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 771 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 828
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 829 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 874
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 875 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 934
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 935 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 976
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+ +
Sbjct: 977 ELSPMQKKYYKYIL-TRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKM 1035
Query: 407 DSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
+ L +G +L L +VL+FSQ + L L+ + L H EG
Sbjct: 1036 PNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-----EG 1090
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1091 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1150
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+ QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1151 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1190
>gi|167539947|ref|XP_001741453.1| chromodomain helicase hrp1 [Entamoeba dispar SAW760]
gi|165893990|gb|EDR22091.1| chromodomain helicase hrp1, putative [Entamoeba dispar SAW760]
Length = 1249
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 142/558 (25%), Positives = 236/558 (42%), Gaps = 128/558 (22%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKW-GIDIP 160
G GCI++ G GKT + FL+ P +I+ P SM+ W E +W +++
Sbjct: 320 GKGCILADEMGLGKTVQVVSFLEHLYSFQKLQGPFLIVVPLSMIEHWHREILEWTDMNVV 379
Query: 161 FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW--KMGTGILGLSYRLFEK 218
Y+ G G + VK Y W K G L + F
Sbjct: 380 IYH-------------------------GSKGNRQLVKHYEWYYKDFQGKLIPGHLKFHV 414
Query: 219 LVSGDELSGILLDLPGL-------FVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPF 271
L++ E+ ++ D L V DE H +N D+ + KAL I+T +++L+GTP
Sbjct: 415 LLTTYEI--VISDWEDLSKISWLVTVVDEAHRLKNKDSKLLKALCNIQTNHKVLLTGTPI 472
Query: 272 QNNFQELENTLSLVR-------QEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDD 324
QNN EL L+ + +EF ++ KS +++K
Sbjct: 473 QNNLGELWTLLNYIEPKTFSSLEEFDHEFNSLDKSAEQVNK------------------- 513
Query: 325 EKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV-EGVKSFVE-- 381
L+E I PF +++S+P +++ ++ QK+ +A+ E + F+
Sbjct: 514 -----LQESIKPFFLRRMKNEVEKSIPPKEETIIEVELTMVQKQYYRALYEKNREFLNKG 568
Query: 382 ---------LNYCVSLLSV--HPSLLPQQFFESFDVDSAKLARLKLDPEAG-------IK 423
N + L V HP L+P V+ A+ PE I+
Sbjct: 569 CVGSNVPNLQNLMMQLRKVCNHPYLIP-------GVEEKDTAQF---PEGSPDYFNQLIR 618
Query: 424 TRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDV 477
+ L+LL+ + + KVL+FSQ + L +I + L+++ + E +DG
Sbjct: 619 SSGKLVLLDKLLPKLYADHHKVLIFSQLKKVLNIIEKYLKYKGYFYER-----LDGSIKS 673
Query: 478 KKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYR 537
+ RQ++I+ +P I L T+A GINL A V++ D WNP + QA +R +R
Sbjct: 674 EDRQNAIDRFMNPEMNRFIFLLCTRAGGFGINLSEADTVIIYDSDWNPQNDLQAQARCHR 733
Query: 538 LGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILE 597
+GQK+ V VY L++ T E R + K+ V + TT+S+P +DK
Sbjct: 734 IGQKKEVKVYRLVSKNTYERYMFERASMKLGLDQAVLANI-------TTSSDP-KDK--- 782
Query: 598 EMAQLYNNPSETLINAII 615
PS+ LI +++
Sbjct: 783 ------QQPSKELIESLL 794
>gi|193785938|dbj|BAG54725.1| unnamed protein product [Homo sapiens]
Length = 1886
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/529 (25%), Positives = 230/529 (43%), Gaps = 96/529 (18%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 700 LHPYQMEGLNWLRFSWAQGTD---------------AILADEMGLGKTVQTAVFLYSLYK 744
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV------ALMD 182
+ H + ++ AP S ++ WE EF+ W D+ G +++ A+ + D
Sbjct: 745 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY-----VGDKDSRAIIRENEFSFED 799
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFV 237
N RG K R K S K F L++ EL I + + G +
Sbjct: 800 NAIRGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLI 845
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DE H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L
Sbjct: 846 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFL 905
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
+ +I+K ++++K+L + + P + + +++P +
Sbjct: 906 EEFADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSRTELI 947
Query: 358 VILQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFES 403
V ++ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 948 VRVELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA 1006
Query: 404 FDVDSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLR 457
K+ D A I+ ++ +VL+FSQ + L L+ + L
Sbjct: 1007 -----PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLE 1061
Query: 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
H EG + +DG RQ +I+ N P +Q L ST+A GINL A V+
Sbjct: 1062 H-----EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVI 1116
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+ D WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1117 IYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1164
>gi|345791649|ref|XP_867754.2| PREDICTED: chromodomain-helicase-DNA-binding protein 4 isoform 3
[Canis lupus familiaris]
Length = 1912
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 726 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 770
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 771 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 828
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 829 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 874
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 875 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 934
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 935 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 976
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 977 ELSPMQKKYYKYIL-TRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 1032
Query: 407 DSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 1033 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 1088
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1089 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 1145
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1146 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1190
>gi|322799754|gb|EFZ20959.1| hypothetical protein SINV_16592 [Solenopsis invicta]
Length = 529
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 134/502 (26%), Positives = 227/502 (45%), Gaps = 55/502 (10%)
Query: 99 STGGGNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGI 157
S G G I++ G GKT T+ FL + Y + H + ++ P S ++ WE EF+ W
Sbjct: 8 SWGQGIDTILADEMGLGKTIQTITFLYSLYKEGHCKGPFLVSVPLSTIINWEREFETWAP 67
Query: 158 DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFE 217
D FY + G +++ V + G V R K+ S + +L SY
Sbjct: 68 D--FYCVT---YVGDKDSRIVIRENELSFEEGAVRSGRASKIRSSLIKFNVLLTSY---- 118
Query: 218 KLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQE 277
+L+S D +D + V DE H +++ + F+ L+ +++L+GTP QNN +E
Sbjct: 119 ELISIDSACLGSIDW-AVLVVDEAHRLKSNQSKFFRLLASYNIAYKLLLTGTPLQNNLEE 177
Query: 278 LENTLS-LVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP 336
L + L+ L R +F + L + +ISK ++++K+L E + P
Sbjct: 178 LFHLLNFLCRDKFND-LAAFQNEFADISK------------------EDQVKKLHEMLGP 218
Query: 337 FVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN-----YCVSLLSV 391
+ + +++P +V ++ QK+ K + ++F LN VSLL++
Sbjct: 219 HMLRRLKADVLKNMPSKSEFIVRVELSPMQKKYYKYIL-TRNFEALNPKGGGQQVSLLNI 277
Query: 392 ---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLV 441
HP L P E+ + L AG +L +L + +VL+
Sbjct: 278 MMDLKKCCNHPYLFPAASQEAPTGPNGSYETSALIKAAGKLVLLSKMLKKLRDDGHRVLI 337
Query: 442 FSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPS---SQARIML 498
FSQ + L ++ + L EG + +DG +RQ +I+ N P +Q + L
Sbjct: 338 FSQMTKMLDILEDYLEG-----EGYKYERIDGNITGAQRQEAIDRFNAPGKYCAQQFVFL 392
Query: 499 ASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWD 558
ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T ++E
Sbjct: 393 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEER 452
Query: 559 KLRRQARKVWWSNMVFPSSDGG 580
+ RK+ +++V GG
Sbjct: 453 VTQVAKRKMMLTHLVVRPGMGG 474
>gi|149636559|ref|XP_001513135.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1
[Ornithorhynchus anatinus]
Length = 1807
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 132/501 (26%), Positives = 216/501 (43%), Gaps = 77/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W
Sbjct: 500 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWA----- 554
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
P++ N V L D R + ++ L + ++ IL +Y + L
Sbjct: 555 -----PQM-----NAVVYLGD--VNSRNMIRTHEWMHLQTKRLKFNILLTTYEIL--LKD 600
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+ +EL +
Sbjct: 601 KAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSL 657
Query: 282 LSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
L + E F E GRE A L +++ PF+
Sbjct: 658 LHFIMPEKFASWEEFEEEHGKGREYGYA----------------------SLHKELEPFL 695
Query: 339 NVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-----FVE 381
+++SLP LR + LQ ++ K L K +G S +E
Sbjct: 696 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 755
Query: 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLV 441
L C + H L+ F L L + + L++ +VL+
Sbjct: 756 LKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRERGNRVLI 810
Query: 442 FSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500
FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+ L S
Sbjct: 811 FSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSEDFCFLLS 864
Query: 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKL 560
T+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T ++E D L
Sbjct: 865 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL 924
Query: 561 RRQARKVWWSNMVFPSSDGGG 581
R +K+ ++V D G
Sbjct: 925 ERAKKKMVLDHLVIQRMDTTG 945
>gi|5917753|gb|AAD56021.1|AF181824_1 chromodomain helicase DNA binding protein 1 [Aegolius funereus]
Length = 918
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 134/508 (26%), Positives = 216/508 (42%), Gaps = 91/508 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W
Sbjct: 121 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWA----- 175
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
P++ N V L D R ++ + W ++ IL +Y +
Sbjct: 176 -----PQM-----NSVVYLGDIISRN--------MIRTHEWMHPQTKRLKFNILLTTYEI 217
Query: 216 FEKLVSGDELSGILLDLPGLFV-FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNN 274
K S L L +F+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 218 LLKDKS------FLGGLNWVFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNS 271
Query: 275 FQELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELK 331
+EL + L + E F E GRE A L
Sbjct: 272 LKELWSLLHFIMPEKFSSWEDFEEEHGKGREFGYA----------------------SLH 309
Query: 332 EKIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS- 378
+++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 310 KELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSG 369
Query: 379 ----FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS 434
+EL C + H L+ F L L + + L++
Sbjct: 370 FLNIMMELKKCCN----HCYLIKPPDDNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRE 424
Query: 435 TNEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQ 493
+VL+FSQ + L ++ E L++R F +R +DG + R+ +++ N S+
Sbjct: 425 RGNRVLIFSQMVRMLDILAEYLKYRQFPFRR------LDGSIKGELRKQALDHFNAEGSE 478
Query: 494 ARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T
Sbjct: 479 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 538
Query: 554 TLEWDKLRRQARKVWWSNMVFPSSDGGG 581
++E D L R +K+ ++V D G
Sbjct: 539 SVEEDILERAKKKMVLDHLVIQRMDTTG 566
>gi|323448278|gb|EGB04179.1| hypothetical protein AURANDRAFT_39128 [Aureococcus anophagefferens]
Length = 711
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 142/524 (27%), Positives = 227/524 (43%), Gaps = 86/524 (16%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAPRSMLLTWEEEFKKWG--IDI 159
G GCI++ G GKT L + L H +++ P S + W E W +++
Sbjct: 8 GRGCILADEMGLGKTAQACCALDRILGLVHSEAVALVVVPLSTIEQWRRELAVWAPRLEV 67
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTG----ILGLSYRL 215
Y+ D RGR L+RY + W T +L +Y
Sbjct: 68 CVYH------------------DATSRGRE---LMRY---FEWGEDTSPRFDVLVATY-- 101
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSR------IKTRRRIILSGT 269
E + L + + V DE H +ND + + +L + I + R++++GT
Sbjct: 102 -ETITHDTALLARCGAVWRVCVVDEAHRLKNDKSQLAVSLEKVLAHTPISKQWRLLITGT 160
Query: 270 PFQNNFQELENTLSLV-RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLK 328
P QNN +EL + L R +F E + E S+ + L ++L
Sbjct: 161 PLQNNLRELWSLLHFADRDKFQESDQFFA----EFSRVERGDL-------------DELA 203
Query: 329 ELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV-EGVKSFVELNYC-- 385
L E + P + + + +P + +V+ ++ QKRL +A+ E S + C
Sbjct: 204 NLHEILEPRLLRRVKEDVAKDIPEKQETVIDVELTTMQKRLYRAIYEKSASLLSSINCGI 263
Query: 386 VSLLSVHPSL--LPQQFFESFDVDSAKLARLKLDPEAGIKT--RFLLILLEL----STNE 437
L V SL +D A L+ +P++ ++ +F+L+ L S
Sbjct: 264 AGLNYVQMSLRNACNHALLVRGIDDALLS----EPDSLVRGSGKFVLLTKLLPRLKSEGR 319
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQAR 495
KVL+FSQ++ L L+ E + +Y +DG + RQ SI+ NDP S A
Sbjct: 320 KVLIFSQFVRLLHLLAELC-------DTNGFMYERLDGTVKMAARQKSIDRFNDPCSDAF 372
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
I L ST+A G+NL A VV+ D WNP + QA +R +RLGQ + V VY L+ S +
Sbjct: 373 IFLLSTRAGGVGLNLQAADTVVIFDSDWNPQNDVQAQARCHRLGQTKDVMVYRLVASRSF 432
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEM 599
E + R +RK+ V S GG+D+ EP + K LE++
Sbjct: 433 EGEMFERASRKLGLEKAVLGS---GGSDRDDKVEP-DRKQLEQL 472
>gi|332838463|ref|XP_508960.3| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein 4 isoform 3 [Pan troglodytes]
Length = 1825
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 639 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 683
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 684 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 741
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 742 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 787
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 788 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 847
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 848 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 889
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 890 ELSPMQKKYYKYIL-TRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 945
Query: 407 DSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 946 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 1001
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1002 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 1058
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1059 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1103
>gi|291392737|ref|XP_002712922.1| PREDICTED: chromodomain helicase DNA binding protein 4-like isoform 1
[Oryctolagus cuniculus]
Length = 1905
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 719 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 763
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 764 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 821
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 822 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 867
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 868 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 927
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 928 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 969
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 970 ELSPMQKKYYKYIL-TRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 1025
Query: 407 DSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 1026 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 1081
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1082 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 1138
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1139 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1183
>gi|354585061|ref|ZP_09003952.1| SNF2 helicase associated domain protein [Paenibacillus lactis 154]
gi|353191178|gb|EHB56687.1| SNF2 helicase associated domain protein [Paenibacillus lactis 154]
Length = 1111
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 132/473 (27%), Positives = 206/473 (43%), Gaps = 80/473 (16%)
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCR----PV-IIAPRSMLLTWEEEFKKWGIDI 159
G I++ G GKT ++ F+ + L P R PV I+AP S+L W+ E ++ +I
Sbjct: 677 GGILADDMGLGKTVQSIAFV---LSLLPEIRKTGEPVLIVAPASLLYNWQSEIARFAPEI 733
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
++ L K+ R G V + Y +L M + R+F
Sbjct: 734 RAAVMDGSRLERKKLI--------RSEGEADVWITSY-QLLRMDMAD----YAKRMFHAA 780
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ FDE +ND T +A+ I +R R L+GTP +N +EL
Sbjct: 781 I-----------------FDEAQAFKNDATQTAQAVKTISSRYRFALTGTPMENRMEELW 823
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVN 339
+ V L RK+ +++ + A+ I + LKEL +KI +
Sbjct: 824 SIYDAV----FPALFGGRKAFQDLPRETVATRIRPF--LLRRLKSDVLKELPDKIETLQS 877
Query: 340 ----VHKGTVLQESLPGLRHSVVI-LQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPS 394
+ + + L LR + L D FQK + + G+ ++ HP+
Sbjct: 878 SALLLEQKKLYTAYLAKLRQETLKHLAKDGFQKSRIRILAGLTRLRQI-------CCHPA 930
Query: 395 LLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE-LSTNEKVLVFSQYIEPLTLIM 453
L F E ++ SAK +L L L E L T +VLVFSQ+ L LI
Sbjct: 931 L----FVEGYEGSSAKFEQL------------LETLAECLHTGRRVLVFSQFTTMLKLIS 974
Query: 454 EQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
++L R G Y+DG+ +R S + N+ + I L S KA G+NL GA
Sbjct: 975 QEL-----GRRGVPFFYLDGQTPPAERASLCSRFNE--GEREIFLISLKAGGTGLNLTGA 1027
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
V+L D+ WNP VE QA RA+R+GQK++V V +++ +T+E + Q +K
Sbjct: 1028 DTVILYDLWWNPAVEEQAADRAHRIGQKKIVQVIRMVSRDTIEDKMITLQQKK 1080
>gi|451847747|gb|EMD61054.1| hypothetical protein COCSADRAFT_124441 [Cochliobolus sativus
ND90Pr]
Length = 1221
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 140/551 (25%), Positives = 242/551 (43%), Gaps = 89/551 (16%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P D+ +F +Q+ G +++W+ + + G II G GKT +
Sbjct: 391 IPGDIYPALFDYQKTGVQWLWELYSQNV---------------GGIIGDEMGLGKTIQAV 435
Query: 122 VFLQAYMKLHPRCRPVII-APRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
F+ +PVI+ P +++ W EF +W P ++ SG +
Sbjct: 436 SFVAGLHYSRLLTKPVIVVCPATVMKQWVNEFHRW---WPALRVSILHTSGS------GM 486
Query: 181 MDNRKRGRGKVGL-IRYVKLYSWKMGTGILGLSYRLFEKL----------VSGDELSGIL 229
+D R+ R + + +R Y + TG + ++ EK+ SG +
Sbjct: 487 LDTRREDRIEREMELRNYGDYDTTL-TGAGKAAKKILEKVKRDGHVLVTTYSGLQTYAEF 545
Query: 230 LDLPGLF---VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV- 285
L +P + + DEGH RN +T + ++T RIILSGTP QNN EL + V
Sbjct: 546 L-IPTEWECAILDEGHKIRNPNTAITIHCKELRTPNRIILSGTPMQNNLTELWSLFDFVF 604
Query: 286 RQEFGEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPFVNVH 341
G ++ + I + +A+ + RCA + LK+ ++P++
Sbjct: 605 PMRLGTLVNFRNQFEFPIKRGGYANASNLEFETAVRCA--------ETLKDAVSPYLLQR 656
Query: 342 KGTVLQESLPGLRHSVVILQPDEFQKRLCK---AVEGVKSFV----ELNYCVSLLSV--- 391
+ LP + V+ + + Q++ + A E ++S ++ Y V L
Sbjct: 657 FKADVATDLPQKKEQVLFCKLTKQQRQAYESFLASEDMRSIANGKRQMLYGVDYLRKICN 716
Query: 392 HPSLLPQQFFE---SFDVDSA-KLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQY-- 445
HP L + +D +A K ++++ E L+ L K L+F+Q+
Sbjct: 717 HPDLTEHKTLSKKPGYDYGNANKSGKMQVVKE--------LLSLWKKGGHKTLLFAQHRI 768
Query: 446 -IEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKA 503
++ L + QL NWR MDG+ +K RQ+ ++ N DP+ + L +TK
Sbjct: 769 MLDILQKFISQLPD-INWRR------MDGETPIKDRQNMVDEFNTDPN--LHVFLLTTKV 819
Query: 504 CCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQ 563
G+NL GA+RV++ D WNP + QA R++RLGQKR V +Y L+++ T+E RQ
Sbjct: 820 GGLGVNLTGANRVIIYDPDWNPSTDIQARERSWRLGQKREVEIYRLMSAGTIEEKIYHRQ 879
Query: 564 ARKVWWSNMVF 574
K + +N V
Sbjct: 880 IFKQFLTNKVL 890
>gi|39204553|ref|NP_666091.1| chromodomain-helicase-DNA-binding protein 4 [Mus musculus]
gi|51701319|sp|Q6PDQ2.1|CHD4_MOUSE RecName: Full=Chromodomain-helicase-DNA-binding protein 4;
Short=CHD-4
gi|35193271|gb|AAH58578.1| Chromodomain helicase DNA binding protein 4 [Mus musculus]
Length = 1915
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/529 (25%), Positives = 230/529 (43%), Gaps = 96/529 (18%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 719 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 763
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV------ALMD 182
+ H + ++ AP S ++ WE EF+ W D+ G +++ A+ + D
Sbjct: 764 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY-----VGDKDSRAIIRENEFSFED 818
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFV 237
N RG K R K S K F L++ EL I + + G +
Sbjct: 819 NAIRGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLI 864
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DE H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L
Sbjct: 865 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFL 924
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
+ +I+K ++++K+L + + P + + +++P +
Sbjct: 925 EEFADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELI 966
Query: 358 VILQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFES 403
V ++ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 967 VRVELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA 1025
Query: 404 FDVDSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLR 457
K+ D A I+ ++ +VL+FSQ + L L+ + L
Sbjct: 1026 -----PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLE 1080
Query: 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
H EG + +DG RQ +I+ N P +Q L ST+A GINL A V+
Sbjct: 1081 H-----EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVI 1135
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+ D WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1136 IYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1183
>gi|348555034|ref|XP_003463329.1| PREDICTED: chromodomain-helicase-DNA-binding protein 4-like [Cavia
porcellus]
Length = 1893
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/521 (26%), Positives = 228/521 (43%), Gaps = 80/521 (15%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 707 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 751
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 752 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 809
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 810 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 855
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 856 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 915
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 916 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 957
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+ +
Sbjct: 958 ELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKM 1016
Query: 407 DSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
+ L +G +L L +VL+FSQ + L L+ + L H EG
Sbjct: 1017 PNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-----EG 1071
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1072 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1131
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+ QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1132 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1171
>gi|444510914|gb|ELV09761.1| Chromodomain-helicase-DNA-binding protein 4 [Tupaia chinensis]
Length = 1875
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 687 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 731
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 732 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 789
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 790 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 835
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 836 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 895
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 896 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 937
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 938 ELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 993
Query: 407 DSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 994 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 1049
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1050 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 1106
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1107 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1151
>gi|384945020|gb|AFI36115.1| chromodomain-helicase-DNA-binding protein 4 [Macaca mulatta]
Length = 1700
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 719 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 763
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 764 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 821
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 822 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 867
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 868 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 927
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 928 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 969
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 970 ELSPMQKKYYKYIL-TRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 1025
Query: 407 DSAKLARLKLDPEAGIKTR------FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 1026 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 1081
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1082 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 1138
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1139 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1183
>gi|451996821|gb|EMD89287.1| hypothetical protein COCHEDRAFT_1180734 [Cochliobolus
heterostrophus C5]
Length = 1221
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 143/553 (25%), Positives = 246/553 (44%), Gaps = 93/553 (16%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P D+ +F +Q+ G +++W+ + + G II G GKT +
Sbjct: 391 IPGDIYPALFDYQKTGVQWLWELYSQNV---------------GGIIGDEMGLGKTIQAV 435
Query: 122 VFLQA--YMKLHPRCRPVII-APRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV 178
F+ Y KL +PVI+ P +++ W EF +W P ++ SG
Sbjct: 436 SFVAGLHYSKL--LTKPVIVVCPATVMKQWVNEFHRW---WPALRVSILHTSGS------ 484
Query: 179 ALMDNRKRGRGKVGL-IRYVKLYSWKMGTGILGLSYRLFEKL----------VSGDELSG 227
++D R+ R + + +R Y + TG + ++ EK+ SG +
Sbjct: 485 GMLDTRREDRIEREMELRNYGDYDTTL-TGAGKAAKKILEKVKRDGHVLVTTYSGLQTYA 543
Query: 228 ILLDLPGLF---VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
L +P + V DEGH RN +T + ++T RIILSGTP QNN EL +
Sbjct: 544 EFL-IPTEWECAVLDEGHKIRNPNTAITIHCKELRTPNRIILSGTPMQNNLTELWSLFDF 602
Query: 285 V-RQEFGEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPFVN 339
V G ++ + I + +A+ + RCA + LK+ ++P++
Sbjct: 603 VFPMRLGTLVNFRNQFEFPIKRGGYANASNLEFETAVRCA--------ETLKDAVSPYLL 654
Query: 340 VHKGTVLQESLPGLRHSVVILQPDEFQKRLCK---AVEGVKSFV----ELNYCVSLLSV- 391
+ LP + V+ + + Q++ + A E ++S ++ Y V L
Sbjct: 655 QRFKADVATDLPQKKEQVLFCKLTKQQRQAYESFLASEDMRSIANGKRQMLYGVDYLRKI 714
Query: 392 --HPSLLPQQFFE---SFDV-DSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQY 445
HP L + +D +++K ++++ E L+ L K L+F+Q+
Sbjct: 715 CNHPDLTEHKTLSKKPGYDYGNASKSGKMQVVKE--------LLSLWKKGGHKTLLFAQH 766
Query: 446 ---IEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLAST 501
++ L + QL NWR MDG+ +K RQ+ ++ N DP+ + L +T
Sbjct: 767 RIMLDILQKFISQLPD-INWRR------MDGETPIKDRQNMVDEFNTDPN--LHVFLLTT 817
Query: 502 KACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561
K G+NL GA+RV++ D WNP + QA R++RLGQKR V +Y L+++ T+E
Sbjct: 818 KVGGLGVNLTGANRVIIYDPDWNPSTDIQARERSWRLGQKREVEIYRLMSAGTIEEKIYH 877
Query: 562 RQARKVWWSNMVF 574
RQ K + +N V
Sbjct: 878 RQIFKQFLTNKVL 890
>gi|354467283|ref|XP_003496099.1| PREDICTED: chromodomain-helicase-DNA-binding protein 4 [Cricetulus
griseus]
Length = 1902
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 700 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 744
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 745 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 802
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 803 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 848
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 849 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 908
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 909 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 950
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 951 ELSPMQKKYYKYIL-TRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 1006
Query: 407 DSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 1007 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 1062
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1063 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 1119
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1120 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1164
>gi|334348294|ref|XP_001369474.2| PREDICTED: chromodomain-helicase-DNA-binding protein 4 [Monodelphis
domestica]
Length = 1823
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/521 (26%), Positives = 228/521 (43%), Gaps = 80/521 (15%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 637 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 681
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 682 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 739
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 740 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 785
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 786 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 845
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 846 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 887
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+ +
Sbjct: 888 ELSPMQKKYYKYIL-TRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKM 946
Query: 407 DSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
+ L +G +L L +VL+FSQ + L L+ + L H EG
Sbjct: 947 PNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-----EG 1001
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1002 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1061
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+ QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1062 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1101
>gi|291392739|ref|XP_002712923.1| PREDICTED: chromodomain helicase DNA binding protein 4-like isoform 2
[Oryctolagus cuniculus]
Length = 1912
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 726 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 770
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 771 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 828
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 829 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 874
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 875 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 934
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 935 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 976
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 977 ELSPMQKKYYKYIL-TRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 1032
Query: 407 DSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 1033 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 1088
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1089 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 1145
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1146 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1190
>gi|330417956|ref|NP_001193430.1| chromodomain-helicase-DNA-binding protein 4 [Bos taurus]
gi|296487143|tpg|DAA29256.1| TPA: chromodomain helicase DNA binding protein 4 [Bos taurus]
Length = 1912
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 726 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 770
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 771 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 828
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 829 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 874
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 875 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 934
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 935 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 976
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 977 ELSPMQKKYYKYIL-TRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 1032
Query: 407 DSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 1033 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 1088
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1089 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 1145
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1146 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1190
>gi|431905346|gb|ELK10391.1| Chromodomain-helicase-DNA-binding protein 4 [Pteropus alecto]
Length = 1854
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 668 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 712
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 713 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 770
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 771 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 816
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 817 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 876
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 877 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 918
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 919 ELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 974
Query: 407 DSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 975 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 1030
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1031 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 1087
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1088 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1132
>gi|20152037|gb|AAM11378.1| LD39323p [Drosophila melanogaster]
Length = 1101
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 123/502 (24%), Positives = 215/502 (42%), Gaps = 80/502 (15%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVI-IAPRSMLLTWEEEFKKWGIDIPFY 162
N I++ G GKT T+ FL + K+H P + + P S + W+ EF W D+
Sbjct: 15 NSVILADEMGLGKTIQTICFLYSLFKIHHLYGPFLCVVPLSTMTAWQREFDLWAPDM--- 71
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGI---LGLSYRLFEKL 219
N L D + R ++ Y W+ + +E +
Sbjct: 72 ------------NVVTYLGDIKSR--------ELIQQYEWQFESSKRLKFNCILTTYEIV 111
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ + G L L V DE H +NDD+ ++K+L T R++++GTP QN+ +EL
Sbjct: 112 LKDKQFLGTL-QWAALLV-DEAHRLKNDDSLLYKSLKEFDTNHRLLITGTPLQNSLKELW 169
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVN 339
L + + + + +H + +D+ L +++ P++
Sbjct: 170 ALLHFIMPDKFDTWENF--------EVQHGNA-----------EDKGYTRLHQQLEPYIL 210
Query: 340 VHKGTVLQESLPG-----LRHSVVILQPDEFQKRLCKAVEGVKS------------FVEL 382
+++SLP LR + LQ ++ L K + ++ +EL
Sbjct: 211 RRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNFDALRKGKRGSTSTFLNIVIEL 270
Query: 383 NYCVSLLSVHPSLLPQQFFE--SFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVL 440
C + H +L+ FE D A LK + + + L L E T +VL
Sbjct: 271 KKCCN----HAALIRPSEFELMGLQQDEALQTLLKGSGKLVLLDKLLCRLKE--TGHRVL 324
Query: 441 VFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
+FSQ + L ++ + L+ R F ++ +DG + R+ +++ N SQ L
Sbjct: 325 IFSQMVRMLDVLADYLQKRHFPFQR------LDGSIKGEMRRQALDHFNAEGSQDFCFLL 378
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
ST+A GINL A V++ D WNP + QA +RA+R+GQK V++Y L+T+ ++E
Sbjct: 379 STRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQI 438
Query: 560 LRRQARKVWWSNMVFPSSDGGG 581
+ R +K+ ++V D G
Sbjct: 439 VERAKQKMVLDHLVIQRMDTTG 460
>gi|119609185|gb|EAW88779.1| chromodomain helicase DNA binding protein 4, isoform CRA_c [Homo
sapiens]
Length = 1908
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/521 (26%), Positives = 228/521 (43%), Gaps = 80/521 (15%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 723 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 767
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 768 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 825
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 826 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 871
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 872 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 931
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 932 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 973
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+ +
Sbjct: 974 ELSPMQKKYYKYIL-TRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKM 1032
Query: 407 DSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
+ L +G +L L +VL+FSQ + L L+ + L H EG
Sbjct: 1033 PNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-----EG 1087
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1088 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1147
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+ QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1148 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1187
>gi|395743837|ref|XP_002822857.2| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein 4 [Pongo abelii]
Length = 1898
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/524 (25%), Positives = 230/524 (43%), Gaps = 86/524 (16%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 708 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 752
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV------ALMD 182
+ H + ++ AP S ++ WE EF+ W D+ G +++ A+ + D
Sbjct: 753 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY-----VGDKDSRAIIRENEFSFED 807
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFV 237
N RG K R K S K F L++ EL I + + G +
Sbjct: 808 NAIRGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLI 853
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DE H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L
Sbjct: 854 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFL 913
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
+ +I+K ++++K+L + + P + + +++P +
Sbjct: 914 EEFADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELI 955
Query: 358 VILQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFES 403
V ++ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 956 VRVELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA 1014
Query: 404 FDVDSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNW 462
+ + L +G +L L +VL+FSQ + L L+ + L H
Sbjct: 1015 PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH---- 1070
Query: 463 REGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVV 522
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1071 -EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSD 1129
Query: 523 WNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1130 WNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1172
>gi|292630891|sp|B5VE38.1|RDH54_YEAS6 RecName: Full=DNA repair and recombination protein RDH54; AltName:
Full=RAD homolog 54; AltName: Full=Recombination factor
TID1; AltName: Full=Two hybrid interaction with DMC1
protein 1; Includes: RecName: Full=DNA topoisomerase;
Includes: RecName: Full=Putative helicase
gi|207347718|gb|EDZ73802.1| YBR073Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 924
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 144/568 (25%), Positives = 246/568 (43%), Gaps = 75/568 (13%)
Query: 72 PHQREGFEFIWKNIAG-------GIDLDELKNS---TSTGGGNGCIISHAPGTGKTGLTL 121
PHQREG +F++ + G D+D S + +GC+++ G GKT +++
Sbjct: 264 PHQREGVKFMYDCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLMSI 323
Query: 122 VFL----------------QAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNL 164
+ Q+ + L C+ + ++ P +++ W+ EF KW NL
Sbjct: 324 TLIWTLIRQTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGNWKREFGKW------LNL 377
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
++ G + L K+ + ++K+ I+G +EKL+S E
Sbjct: 378 SRI--------GVLTLSSRNSPDMDKMAVRNFLKVQRI-YQVLIIG-----YEKLLSVSE 423
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
L + V DEGH +N + + L + RR+++L+GTP QN+ E +
Sbjct: 424 ELEKNKHLIDMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDF 483
Query: 285 VRQE-FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
+ G R+ I++A+ + + + +E+ KE+ E F+
Sbjct: 484 INPGILGSFASFKRRFIIPITRARDTA--NRYNEELLEKGEERSKEMIEITKRFILRRTN 541
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAV-EGVK-SFVELNYCVSL--------LSVHP 393
+L++ LP ++ +P Q K + +G + F +L + SL + P
Sbjct: 542 AILEKYLPPKTDIILFCKPYSQQILAFKDILQGARLDFGQLTFSSSLGLITLLKKVCNSP 601
Query: 394 SLLPQQ-FFESFDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPL 449
L+ +++S D+ +G K R L+ LLE T EKV+V S Y + L
Sbjct: 602 GLVGSDPYYKSHIKDTQSQDSYSRSLNSG-KLRVLMTLLEGIRKGTKEKVVVVSNYTQTL 660
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509
+I E L + G +DG K+R S + N + +L S K+ G+N
Sbjct: 661 DII-ENLMNM----AGMSHCRLDGSIPAKQRDSIVTSFNRNPAIFGFLL-SAKSGGVGLN 714
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
LVGASR++L D WNP V+ QA+SR +R GQK+ +Y L+T+ ++ L+RQ K
Sbjct: 715 LVGASRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSL 774
Query: 570 SNMVFPSSD----GGGNDQTTASEPLED 593
S S+ ND E L+D
Sbjct: 775 SQKFLGDSEMRNKESSNDDLFNKEDLKD 802
>gi|346977297|gb|EGY20749.1| DNA repair and recombination protein RAD26 [Verticillium dahliae
VdLs.17]
Length = 1116
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 144/544 (26%), Positives = 225/544 (41%), Gaps = 87/544 (15%)
Query: 62 VPRDVRKKMFPHQREGFEFI---WKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
+P D+ +F +Q+ G +++ + GGI DE+ G GKT
Sbjct: 344 LPGDIHPSLFSYQKTGVQWLAELYSQNVGGIVGDEM------------------GLGKTV 385
Query: 119 LTLVFLQAYMKLHPRCRPVII-APRSMLLTWEEEFKKW--GIDIPFYNLNKPELSGKENN 175
+ F+ A +PVII AP ++L W EF +W + + + + + +
Sbjct: 386 QAIAFIAALHYSKKLTKPVIIVAPATVLRQWVNEFHRWWPALRVSILHSSGSGMINLRED 445
Query: 176 GAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGL-SYRLFEKLVSGDELSGILLDLPG 234
N +R + ++ V + + T GL +Y+ DEL + D
Sbjct: 446 DTDEETHNGRRDKSVRKIVDRVVKHGHVLVTTYNGLQTYQ--------DELLHVEWDYA- 496
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294
V DEGH RN + + ++T RIILSGTP QNN EL + + L
Sbjct: 497 --VLDEGHKIRNPNAEITVLCKELRTPNRIILSGTPVQNNLSELWSLFDFIYPMRLGTLV 554
Query: 295 TVRKSGR-EISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQES 349
T R I + +A I + +CA + LKE I+ ++ +
Sbjct: 555 TFRTQFEVPIKQGGYAGATNLQILTAEKCA--------ETLKEAISQYLLQRLKIDVAAD 606
Query: 350 LPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSV----------------HP 393
LP V+ F K + +E K F+ + +LS HP
Sbjct: 607 LPSKTERVL------FCKMTDRQLEAYKQFLNSDAVNQILSARRKSLYGIDILRKICNHP 660
Query: 394 SLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTL 451
L+ D DPE K + LL++ K L+FSQ L +
Sbjct: 661 DLIDPHLQNKAGYDWG-------DPEKSGKMLVVRNLLQIWKKLGHKTLLFSQSKMMLNV 713
Query: 452 IMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGINL 510
I + L E + + MDG+ ++KRQS I+ N DP + I L +T+ G+NL
Sbjct: 714 IEKFL----GGLETVKYVRMDGETSIEKRQSLIDRFNTDP--EIDIFLLTTRTGGLGVNL 767
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS 570
GA+R+++ D WNP + QA RA+RLGQ R V +Y L+T+ T+E RQ K + +
Sbjct: 768 TGANRIIIFDPDWNPSTDMQARERAWRLGQTRSVEIYRLMTAGTIEEKIYHRQIFKQFMT 827
Query: 571 NMVF 574
N V
Sbjct: 828 NKVL 831
>gi|60360510|dbj|BAD90499.1| mKIAA4075 protein [Mus musculus]
Length = 1945
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/521 (26%), Positives = 228/521 (43%), Gaps = 80/521 (15%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 747 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 791
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 792 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 849
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 850 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 895
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 896 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 955
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 956 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 997
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+ +
Sbjct: 998 ELSPMQKKYYKYIL-TRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKM 1056
Query: 407 DSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
+ L +G +L L +VL+FSQ + L L+ + L H EG
Sbjct: 1057 PNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-----EG 1111
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1112 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1171
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+ QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1172 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1211
>gi|441670660|ref|XP_003273866.2| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein 4 [Nomascus leucogenys]
Length = 1910
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/521 (26%), Positives = 228/521 (43%), Gaps = 80/521 (15%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 724 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 768
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 769 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 826
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 827 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 872
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 873 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 932
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 933 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 974
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+ +
Sbjct: 975 ELSPMQKKYYKYIL-TRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKM 1033
Query: 407 DSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
+ L +G +L L +VL+FSQ + L L+ + L H EG
Sbjct: 1034 PNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-----EG 1088
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1089 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1148
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+ QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1149 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1188
>gi|194760843|ref|XP_001962642.1| GF14337 [Drosophila ananassae]
gi|190616339|gb|EDV31863.1| GF14337 [Drosophila ananassae]
Length = 1891
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 127/502 (25%), Positives = 219/502 (43%), Gaps = 80/502 (15%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVI-IAPRSMLLTWEEEFKKWGIDIPFY 162
N I++ G GKT T+ FL + K+H P + + P S + W+ EF W D+
Sbjct: 545 NSVILADEMGLGKTIQTICFLYSLFKVHHLYGPFLCVVPLSTMTAWQREFNLWAPDM--- 601
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKM-GTGILGLSYRL--FEKL 219
N L D + R ++ Y W+ G+ L + L +E +
Sbjct: 602 ------------NVVTYLGDIKSR--------ELIQQYEWQFEGSKRLKFNCILTTYEIV 641
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ + G L L V DE H +NDD+ ++K+L T R++++GTP QN+ +EL
Sbjct: 642 LKDKQFLGTL-QWAALLV-DEAHRLKNDDSLLYKSLKEFDTNHRLLITGTPLQNSLKELW 699
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVN 339
L + E + + +H + +D+ L +++ P++
Sbjct: 700 ALLHFIMPEKFDTWENF--------ELQHGNA-----------EDKGYTRLHQQLEPYIL 740
Query: 340 VHKGTVLQESLPG-----LRHSVVILQPDEFQKRLCKAVEGVKS------------FVEL 382
+++SLP LR + LQ ++ L K + ++ +EL
Sbjct: 741 RRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNFDALRKGKRGSTSTFLNIVIEL 800
Query: 383 NYCVSLLSVHPSLLPQQFFE--SFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVL 440
C + H +L+ FE D A LK + + + L L E T +VL
Sbjct: 801 KKCCN----HAALIRPSEFELMGLQQDEALQTLLKGSGKLVLLDKLLCRLKE--TGHRVL 854
Query: 441 VFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
+FSQ + L ++ + L+ R F ++ +DG + R+ +++ N SQ L
Sbjct: 855 IFSQMVRMLDVLADYLQKRHFPFQR------LDGSIKGEMRRQALDHFNAEGSQDFCFLL 908
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
ST+A GINL A V++ D WNP + QA +RA+R+GQK V++Y L+T+ ++E
Sbjct: 909 STRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQI 968
Query: 560 LRRQARKVWWSNMVFPSSDGGG 581
+ R +K+ ++V D G
Sbjct: 969 VERAKQKMVLDHLVIQRMDTTG 990
>gi|426227030|ref|XP_004007632.1| PREDICTED: chromodomain-helicase-DNA-binding protein 4 [Ovis aries]
Length = 1963
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 777 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 821
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 822 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 879
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 880 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 925
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 926 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 985
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 986 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 1027
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 1028 ELSPMQKKYYKYIL-TRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 1083
Query: 407 DSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 1084 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 1139
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1140 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 1196
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1197 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1241
>gi|410301138|gb|JAA29169.1| chromodomain helicase DNA binding protein 4 [Pan troglodytes]
Length = 1912
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/521 (26%), Positives = 228/521 (43%), Gaps = 80/521 (15%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 726 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 770
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 771 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 828
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 829 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 874
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 875 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 934
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 935 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 976
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+ +
Sbjct: 977 ELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKM 1035
Query: 407 DSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
+ L +G +L L +VL+FSQ + L L+ + L H EG
Sbjct: 1036 PNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-----EG 1090
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1091 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1150
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+ QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1151 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1190
>gi|119609183|gb|EAW88777.1| chromodomain helicase DNA binding protein 4, isoform CRA_a [Homo
sapiens]
Length = 1911
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/521 (26%), Positives = 228/521 (43%), Gaps = 80/521 (15%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 726 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 770
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 771 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 828
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 829 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 874
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 875 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 934
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 935 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 976
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+ +
Sbjct: 977 ELSPMQKKYYKYIL-TRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKM 1035
Query: 407 DSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
+ L +G +L L +VL+FSQ + L L+ + L H EG
Sbjct: 1036 PNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-----EG 1090
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1091 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1150
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+ QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1151 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1190
>gi|410963637|ref|XP_003988370.1| PREDICTED: chromodomain-helicase-DNA-binding protein 4 isoform 2
[Felis catus]
Length = 1905
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 719 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 763
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 764 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 821
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 822 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 867
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 868 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 927
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 928 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 969
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 970 ELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 1025
Query: 407 DSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 1026 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 1081
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1082 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 1138
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1139 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1183
>gi|297261645|ref|XP_001107252.2| PREDICTED: chromodomain-helicase-DNA-binding protein 4-like isoform 8
[Macaca mulatta]
Length = 1912
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/521 (26%), Positives = 228/521 (43%), Gaps = 80/521 (15%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 726 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 770
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 771 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 828
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 829 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 874
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 875 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 934
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 935 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 976
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+ +
Sbjct: 977 ELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKM 1035
Query: 407 DSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
+ L +G +L L +VL+FSQ + L L+ + L H EG
Sbjct: 1036 PNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-----EG 1090
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1091 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1150
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+ QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1151 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1190
>gi|195435393|ref|XP_002065676.1| GK15574 [Drosophila willistoni]
gi|194161761|gb|EDW76662.1| GK15574 [Drosophila willistoni]
Length = 1941
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 128/502 (25%), Positives = 220/502 (43%), Gaps = 80/502 (15%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVI-IAPRSMLLTWEEEFKKWGIDIPFY 162
N I++ G GKT T+ FL A K+ P + + P S + W+ EF W D+
Sbjct: 569 NSVILADEMGLGKTIQTICFLYALFKIQHLYGPFLCVVPLSTMTAWQREFDLWAPDM--- 625
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKM-GTGILGLSYRL--FEKL 219
N L D + R ++ Y W+ G+ L + L +E +
Sbjct: 626 ------------NVVTYLGDVKSR--------ELIQQYEWQFEGSKRLKFNCILTTYEIV 665
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ + G L L V DE H +NDD+ ++K+L T R++++GTP QN+ +EL
Sbjct: 666 LKDKQFLGTL-QWAALLV-DEAHRLKNDDSLLYKSLKEFDTNHRLLITGTPLQNSLKELW 723
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVN 339
L + E + E + +H + +D+ L +++ P++
Sbjct: 724 ALLHFIMPEKFDTW--------ENFELQHGNA-----------EDKGYTRLHQQLEPYIL 764
Query: 340 VHKGTVLQESLPG-----LRHSVVILQPDEFQKRLCKAVEGVKS------------FVEL 382
+++SLP LR + LQ ++ L K + ++ +EL
Sbjct: 765 RRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNFDALRKGKRGSTSTFLNIVIEL 824
Query: 383 NYCVSLLSVHPSLLPQQFFE--SFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVL 440
C + H +L+ FE D A LK + + + L L E T +VL
Sbjct: 825 KKCCN----HAALIRPSEFELMGLQQDEALQTLLKGSGKLVLLDKLLCRLKE--TGHRVL 878
Query: 441 VFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
+FSQ + L ++ + L+ R F+++ +DG + R+ +++ N SQ L
Sbjct: 879 IFSQMVRMLDVLADYLQKRHFSFQR------LDGSIKGEMRRQALDHFNAEGSQDFCFLL 932
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
ST+A GINL A V++ D WNP + QA +RA+R+GQK V++Y L+T+ ++E
Sbjct: 933 STRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQI 992
Query: 560 LRRQARKVWWSNMVFPSSDGGG 581
+ R +K+ ++V D G
Sbjct: 993 VERAKQKMVLDHLVIQRMDTTG 1014
>gi|402884886|ref|XP_003905901.1| PREDICTED: chromodomain-helicase-DNA-binding protein 4 [Papio anubis]
Length = 1912
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 726 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 770
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 771 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 828
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 829 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 874
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 875 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 934
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 935 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 976
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 977 ELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 1032
Query: 407 DSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 1033 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 1088
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1089 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 1145
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1146 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1190
>gi|350584424|ref|XP_003126577.3| PREDICTED: chromodomain-helicase-DNA-binding protein 4 [Sus scrofa]
gi|417515864|gb|JAA53737.1| chromodomain-helicase-DNA-binding protein 4 [Sus scrofa]
Length = 1912
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/521 (26%), Positives = 228/521 (43%), Gaps = 80/521 (15%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 726 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 770
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 771 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 828
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 829 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 874
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 875 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 934
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 935 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 976
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+ +
Sbjct: 977 ELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKM 1035
Query: 407 DSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
+ L +G +L L +VL+FSQ + L L+ + L H EG
Sbjct: 1036 PNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-----EG 1090
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1091 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1150
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+ QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1151 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1190
>gi|395510554|ref|XP_003759539.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1 [Sarcophilus
harrisii]
Length = 1834
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 132/501 (26%), Positives = 216/501 (43%), Gaps = 77/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W
Sbjct: 528 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWA----- 582
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
P++ N V L D R + ++ L + ++ IL +Y + L
Sbjct: 583 -----PQM-----NAVVYLGD--INSRNMIRTHEWMHLQTKRLKFNILLTTYEIL--LKD 628
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+ +EL +
Sbjct: 629 KAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSL 685
Query: 282 LSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
L + E F E GRE A L +++ PF+
Sbjct: 686 LHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHKELEPFL 723
Query: 339 NVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-----FVE 381
+++SLP LR + LQ ++ K L K +G S +E
Sbjct: 724 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 783
Query: 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLV 441
L C + H L+ F L L + + L++ +VL+
Sbjct: 784 LKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLKERGNRVLI 838
Query: 442 FSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500
FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+ L S
Sbjct: 839 FSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSEDFCFLLS 892
Query: 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKL 560
T+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T ++E D L
Sbjct: 893 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL 952
Query: 561 RRQARKVWWSNMVFPSSDGGG 581
R +K+ ++V D G
Sbjct: 953 ERAKKKMVLDHLVIQRMDTTG 973
>gi|410227432|gb|JAA10935.1| chromodomain helicase DNA binding protein 4 [Pan troglodytes]
gi|410350199|gb|JAA41703.1| chromodomain helicase DNA binding protein 4 [Pan troglodytes]
Length = 1914
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/521 (26%), Positives = 228/521 (43%), Gaps = 80/521 (15%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 726 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 770
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 771 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 828
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 829 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 874
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 875 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 934
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 935 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 976
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+ +
Sbjct: 977 ELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKM 1035
Query: 407 DSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
+ L +G +L L +VL+FSQ + L L+ + L H EG
Sbjct: 1036 PNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-----EG 1090
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1091 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1150
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+ QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1151 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1190
>gi|195470933|ref|XP_002087761.1| GE14968 [Drosophila yakuba]
gi|194173862|gb|EDW87473.1| GE14968 [Drosophila yakuba]
Length = 1883
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 127/502 (25%), Positives = 219/502 (43%), Gaps = 80/502 (15%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVI-IAPRSMLLTWEEEFKKWGIDIPFY 162
N I++ G GKT T+ FL + KLH P + + P S + W+ EF W D+
Sbjct: 546 NSVILADEMGLGKTIQTICFLYSLFKLHHLYGPFLCVVPLSTMTAWQREFDLWAPDM--- 602
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKM-GTGILGLSYRL--FEKL 219
N L D + R ++ Y W+ G+ L + L +E +
Sbjct: 603 ------------NVVTYLGDIKSR--------ELIQQYEWQFEGSKRLKFNCILTTYEIV 642
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ + G L L V DE H +NDD+ ++K+L T R++++GTP QN+ +EL
Sbjct: 643 LKDKQFLGTL-QWAALLV-DEAHRLKNDDSLLYKSLKEFDTNHRLLITGTPLQNSLKELW 700
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVN 339
L + + + + +H + +D+ L +++ P++
Sbjct: 701 ALLHFIMPDKFDTWENF--------EVQHGNA-----------EDKGYTRLHQQLEPYIL 741
Query: 340 VHKGTVLQESLPG-----LRHSVVILQPDEFQKRLCKAVEGVKS------------FVEL 382
+++SLP LR + LQ ++ L K + ++ +EL
Sbjct: 742 RRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNFDALRKGKRGSTSTFLNIVIEL 801
Query: 383 NYCVSLLSVHPSLLPQQFFE--SFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVL 440
C + H +L+ FE D A LK + + + L L E T +VL
Sbjct: 802 KKCCN----HAALIRPSEFELMGLQQDEALQTLLKGSGKLVLLDKLLCRLKE--TGHRVL 855
Query: 441 VFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
+FSQ + L ++ + L+ R F ++ +DG + R+ +++ N SQ L
Sbjct: 856 IFSQMVRMLDVLADYLQKRHFPFQR------LDGSIKGEMRRQALDHFNAEGSQDFCFLL 909
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
ST+A GINL A V++ D WNP + QA +RA+R+GQK V++Y L+T+ ++E
Sbjct: 910 STRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQI 969
Query: 560 LRRQARKVWWSNMVFPSSDGGG 581
+ R +K+ ++V D G
Sbjct: 970 VERAKQKMVLDHLVIQRMDTTG 991
>gi|410301140|gb|JAA29170.1| chromodomain helicase DNA binding protein 4 [Pan troglodytes]
Length = 1914
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/521 (26%), Positives = 228/521 (43%), Gaps = 80/521 (15%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 726 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 770
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 771 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 828
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 829 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 874
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 875 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 934
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 935 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 976
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+ +
Sbjct: 977 ELSPMQKKYYKYIL-TRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKM 1035
Query: 407 DSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
+ L +G +L L +VL+FSQ + L L+ + L H EG
Sbjct: 1036 PNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-----EG 1090
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1091 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1150
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+ QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1151 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1190
>gi|395847597|ref|XP_003796455.1| PREDICTED: chromodomain-helicase-DNA-binding protein 4 [Otolemur
garnettii]
Length = 1912
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 726 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 770
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 771 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 828
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 829 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 874
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 875 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 934
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 935 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 976
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 977 ELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 1032
Query: 407 DSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 1033 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 1088
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1089 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 1145
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1146 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1190
>gi|397499204|ref|XP_003820349.1| PREDICTED: chromodomain-helicase-DNA-binding protein 4 isoform 1 [Pan
paniscus]
gi|410350197|gb|JAA41702.1| chromodomain helicase DNA binding protein 4 [Pan troglodytes]
Length = 1905
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 719 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 763
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 764 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 821
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 822 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 867
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 868 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 927
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 928 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 969
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 970 ELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 1025
Query: 407 DSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 1026 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 1081
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1082 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 1138
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1139 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1183
>gi|440895655|gb|ELR47793.1| Chromodomain-helicase-DNA-binding protein 4 [Bos grunniens mutus]
Length = 1945
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/524 (25%), Positives = 230/524 (43%), Gaps = 86/524 (16%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 726 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 770
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV------ALMD 182
+ H + ++ AP S ++ WE EF+ W D+ G +++ A+ + D
Sbjct: 771 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY-----VGDKDSRAIIRENEFSFED 825
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFV 237
N RG K R K S K F L++ EL I + + G +
Sbjct: 826 NAIRGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLI 871
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DE H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L
Sbjct: 872 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFL 931
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
+ +I+K ++++K+L + + P + + +++P +
Sbjct: 932 EEFADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELI 973
Query: 358 VILQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFES 403
V ++ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 974 VRVELSPMQKKYYKYIL-TRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA 1032
Query: 404 FDVDSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNW 462
+ + L +G +L L +VL+FSQ + L L+ + L H
Sbjct: 1033 PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH---- 1088
Query: 463 REGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVV 522
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1089 -EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSD 1147
Query: 523 WNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1148 WNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1190
>gi|389583592|dbj|GAB66326.1| helicase [Plasmodium cynomolgi strain B]
Length = 1455
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 137/534 (25%), Positives = 231/534 (43%), Gaps = 95/534 (17%)
Query: 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLV 122
P ++ M P+Q EG ++++ I NG I++ G GKT L +
Sbjct: 349 PANINGCMKPYQIEGLNWLYQLYRHRI--------------NG-ILADEMGLGKT-LQTI 392
Query: 123 FLQAYMKLHP--RCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
L Y++ + + + +II PRS L W +E KKW ++ + + +E N V
Sbjct: 393 SLLCYLRFNKNIKRKSIIICPRSTLDNWYQEIKKWCTEMKAFKYYGSKEQRRELNKNVLH 452
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLF-VFD 239
D +L +Y + K S L D+ F V D
Sbjct: 453 TD-----------------------YDVLLTTYEIVIKDKSA------LFDIDWFFLVID 483
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS 299
E H +ND + + ++ +++ R++++GTP NN +EL + L+ + + + +
Sbjct: 484 EAHRIKNDKSVLSSSVRFLRSENRLLITGTPLHNNLKELWSLLNFL-------MPKIFDN 536
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI 359
E + S IS +++ E + +L + PF+ +++SLP R V
Sbjct: 537 SEEFDNLFNISKIS----LNDNKQSEIITQLHTILKPFMLRRLKVEVEQSLPPKREIYVF 592
Query: 360 LQPDEFQKRL-----------CKAVEGVKS-----FVELNYCVSLLSVHPSLLPQQFFES 403
+ + QK+L A+ G K+ ++L C + HP L
Sbjct: 593 VGMSKLQKKLYSDILSKNIDVINAMTGSKNQMLNILMQLRKCCN----HPYL-------- 640
Query: 404 FD-VDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQLRHRF 460
FD ++ E K L LL N +VL+FSQ L +I + R
Sbjct: 641 FDGIEEPPYVEGNHLIETSGKMSLLDKLLPRLKKENSRVLLFSQMTRVLDIIDDYCR--- 697
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
W+ E L +DG +RQ IN N+P+S+ I L ST+A GINL A V+L D
Sbjct: 698 -WK-NYEYLRIDGSTVGDERQIRINQFNEPNSKYFIFLLSTRAGGIGINLTTADIVILFD 755
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVF 574
+NP ++ QA+ RA+R+GQK+ V VY +T ++E + R A+K+ +++
Sbjct: 756 SDYNPQMDIQAMDRAHRIGQKKKVIVYRFVTQNSVEEKIVERAAKKLKLDSLII 809
>gi|194211609|ref|XP_001496418.2| PREDICTED: chromodomain-helicase-DNA-binding protein 4 [Equus
caballus]
Length = 1912
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 726 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 770
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 771 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 828
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 829 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 874
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 875 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 934
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 935 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 976
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 977 ELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 1032
Query: 407 DSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 1033 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 1088
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1089 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 1145
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1146 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1190
>gi|51599156|ref|NP_001264.2| chromodomain-helicase-DNA-binding protein 4 [Homo sapiens]
gi|311033360|sp|Q14839.2|CHD4_HUMAN RecName: Full=Chromodomain-helicase-DNA-binding protein 4;
Short=CHD-4; AltName: Full=ATP-dependent helicase CHD4;
AltName: Full=Mi-2 autoantigen 218 kDa protein; AltName:
Full=Mi2-beta
Length = 1912
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/521 (26%), Positives = 228/521 (43%), Gaps = 80/521 (15%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 726 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 770
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 771 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 828
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 829 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 874
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 875 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 934
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 935 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 976
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+ +
Sbjct: 977 ELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKM 1035
Query: 407 DSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
+ L +G +L L +VL+FSQ + L L+ + L H EG
Sbjct: 1036 PNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-----EG 1090
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1091 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1150
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+ QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1151 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1190
>gi|397499206|ref|XP_003820350.1| PREDICTED: chromodomain-helicase-DNA-binding protein 4 isoform 2 [Pan
paniscus]
gi|1107696|emb|CAA60384.1| Mi-2 protein [Homo sapiens]
gi|119609184|gb|EAW88778.1| chromodomain helicase DNA binding protein 4, isoform CRA_b [Homo
sapiens]
gi|410227430|gb|JAA10934.1| chromodomain helicase DNA binding protein 4 [Pan troglodytes]
gi|410350195|gb|JAA41701.1| chromodomain helicase DNA binding protein 4 [Pan troglodytes]
Length = 1912
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/521 (26%), Positives = 228/521 (43%), Gaps = 80/521 (15%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 726 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 770
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 771 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 828
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 829 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 874
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 875 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 934
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 935 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 976
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+ +
Sbjct: 977 ELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKM 1035
Query: 407 DSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
+ L +G +L L +VL+FSQ + L L+ + L H EG
Sbjct: 1036 PNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-----EG 1090
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1091 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1150
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+ QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1151 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1190
>gi|410963635|ref|XP_003988369.1| PREDICTED: chromodomain-helicase-DNA-binding protein 4 isoform 1
[Felis catus]
Length = 1912
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 726 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 770
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 771 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 828
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 829 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 874
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 875 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 934
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 935 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 976
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 977 ELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 1032
Query: 407 DSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 1033 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 1088
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1089 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 1145
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1146 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1190
>gi|392347634|ref|XP_232354.5| PREDICTED: chromodomain-helicase-DNA-binding protein 4 [Rattus
norvegicus]
Length = 1921
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 719 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 763
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 764 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 821
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 822 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 867
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 868 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 927
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 928 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 969
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 970 ELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 1025
Query: 407 DSAKLARLKLDPEAGIKTR------FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 1026 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 1081
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1082 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 1138
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1139 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1183
>gi|383415431|gb|AFH30929.1| chromodomain-helicase-DNA-binding protein 4 [Macaca mulatta]
Length = 1899
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/521 (26%), Positives = 228/521 (43%), Gaps = 80/521 (15%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 713 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 757
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 758 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 815
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 816 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 861
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 862 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 921
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 922 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 963
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+ +
Sbjct: 964 ELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKM 1022
Query: 407 DSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
+ L +G +L L +VL+FSQ + L L+ + L H EG
Sbjct: 1023 PNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-----EG 1077
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1078 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1137
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+ QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1138 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1177
>gi|344242425|gb|EGV98528.1| Chromodomain-helicase-DNA-binding protein 4 [Cricetulus griseus]
Length = 1930
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/524 (25%), Positives = 230/524 (43%), Gaps = 86/524 (16%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 700 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 744
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV------ALMD 182
+ H + ++ AP S ++ WE EF+ W D+ G +++ A+ + D
Sbjct: 745 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY-----VGDKDSRAIIRENEFSFED 799
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFV 237
N RG K R K S K F L++ EL I + + G +
Sbjct: 800 NAIRGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLI 845
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DE H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L
Sbjct: 846 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFL 905
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
+ +I+K ++++K+L + + P + + +++P +
Sbjct: 906 EEFADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELI 947
Query: 358 VILQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFES 403
V ++ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 948 VRVELSPMQKKYYKYIL-TRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA 1006
Query: 404 FDVDSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNW 462
+ + L +G +L L +VL+FSQ + L L+ + L H
Sbjct: 1007 PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH---- 1062
Query: 463 REGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVV 522
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1063 -EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSD 1121
Query: 523 WNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1122 WNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1164
>gi|222528088|ref|YP_002571970.1| non-specific serine/threonine protein kinase [Caldicellulosiruptor
bescii DSM 6725]
gi|222454935|gb|ACM59197.1| Non-specific serine/threonine protein kinase [Caldicellulosiruptor
bescii DSM 6725]
Length = 1112
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 142/514 (27%), Positives = 234/514 (45%), Gaps = 91/514 (17%)
Query: 102 GGNGCIISHAPGTGKTGLTLVFLQAYM-KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIP 160
G G I++ G GKT L F+ A K+ C +++AP S++ W++E +K+
Sbjct: 668 NGFGGILADDMGLGKTVQVLSFISACKDKIAGPC--LVVAPTSLVYNWQQETQKFT---- 721
Query: 161 FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV 220
P+L +G A KR +I +K Y I+ SY L ++ +
Sbjct: 722 ------PDLKTVVVDGTPA-----KRSE----IIENLKDYD------IVITSYSLLKRDI 760
Query: 221 SGDELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ DL + V DE +N + +A+SRI + L+GTP +NN EL
Sbjct: 761 D------LYKDLEFSVCVVDEAQHIKNPQSLSKEAVSRINAKCCFALTGTPIENNLSELW 814
Query: 280 NTLSLVRQEF-GEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
+ V + G R + + I K D++ LK L++ IAPFV
Sbjct: 815 SIFDFVLPGYLGTHTRFSERFEKPIEK---------------QNDEKALKLLQKMIAPFV 859
Query: 339 -NVHKGTVLQESLP-----GLRHSVVILQPDEFQKRLCKAVEGVKSFVELN----YCVSL 388
K VL E LP L ++ Q + ++ L KA E +K ++L + +
Sbjct: 860 LRRLKKDVLSE-LPEKIETNLEVNMTPEQENIYKLYLLKAREDIKKEIDLKGFEKSKIKI 918
Query: 389 LSVHPSLL-----PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFS 443
S+ L P+ F ++++ S K+ + E I++ +V+VFS
Sbjct: 919 FSIFTRLRQICCHPKLFLQNYEGSSGKIELFEEILEDVIES-----------GHRVVVFS 967
Query: 444 QYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKA 503
Q++E L ++ E+++ + G E Y+DG ++R +N N S Q ++ L S KA
Sbjct: 968 QWVEMLKILEERIKEK-----GFEYFYLDGSTKSEERIDMVNKFN--SGQKQVFLVSLKA 1020
Query: 504 CCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQ 563
G+NL GA V+L D+ WNP VE QA+ RA+R+GQ+ V V+ LIT T+E Q
Sbjct: 1021 GGFGLNLTGADVVILYDLWWNPAVENQAMDRAHRIGQENSVQVFRLITRNTIEERIFELQ 1080
Query: 564 ARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILE 597
+K + + S+ QT +E ED++++
Sbjct: 1081 QKKKDLFDSIVSSA------QTFLTELSEDELMQ 1108
>gi|355563925|gb|EHH20425.1| hypothetical protein EGK_03279 [Macaca mulatta]
Length = 1899
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 713 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 757
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 758 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 815
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 816 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 861
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 862 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 921
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 922 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 963
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 964 ELSPMQKKYYKYIL-TRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 1019
Query: 407 DSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 1020 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 1075
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1076 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 1132
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1133 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1177
>gi|383415433|gb|AFH30930.1| chromodomain-helicase-DNA-binding protein 4 [Macaca mulatta]
gi|384945022|gb|AFI36116.1| chromodomain-helicase-DNA-binding protein 4 [Macaca mulatta]
Length = 1912
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 726 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 770
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 771 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 828
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 829 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 874
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 875 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 934
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 935 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 976
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 977 ELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 1032
Query: 407 DSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 1033 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 1088
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1089 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 1145
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1146 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1190
>gi|432111850|gb|ELK34892.1| Chromodomain-helicase-DNA-binding protein 4 [Myotis davidii]
Length = 1912
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 726 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 770
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 771 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 828
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 829 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 874
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 875 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 934
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 935 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 976
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 977 ELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 1032
Query: 407 DSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 1033 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 1088
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1089 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 1145
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1146 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1190
>gi|421858869|ref|ZP_16291120.1| superfamily II DNA/RNA helicase [Paenibacillus popilliae ATCC 14706]
gi|410831549|dbj|GAC41557.1| superfamily II DNA/RNA helicase [Paenibacillus popilliae ATCC 14706]
Length = 1112
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 134/495 (27%), Positives = 217/495 (43%), Gaps = 82/495 (16%)
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYN 163
G I++ G GKT ++ ++ + + PV I++P S+ W E ++
Sbjct: 680 GGILADDMGLGKTVQSIAYILSEREQGEEKLPVLIVSPSSLTYNWAHECARFA------- 732
Query: 164 LNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEK---LV 220
P+L V ++ +K+ R V L++ ++ SY L + +
Sbjct: 733 ---PQLR-------VLVVAGQKKER--------VALWAEMKEADVIVTSYPLLRRDIEIY 774
Query: 221 SGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELEN 280
+G ++LD E +N + +A+S I+ RR L+GTP +N+ EL +
Sbjct: 775 AGQPFHTLILD--------EAQAIKNASSQTAQAVSEIQASRRFALTGTPIENSLDELWS 826
Query: 281 TLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIA----P 336
+ V L T +KS R++ + A +I + L EL +KI P
Sbjct: 827 IFNAV----FPGLFTNQKSFRDLPAERVARIIRPF--ILRRLKKDVLTELPDKIESVQYP 880
Query: 337 FVNVHKGTVLQESLPGLRHSV-VILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSL 395
+ + + L L+ + L+ + FQ+ K + G+ +L HP+L
Sbjct: 881 ELGTEQKKLYTAYLAKLQQATEQDLKTEGFQRSRMKILAGITRLRQL-------CCHPAL 933
Query: 396 LPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS-TNEKVLVFSQYIEPLTLIME 454
F E + S KL L L + EL+ + +VL+FSQY L LI E
Sbjct: 934 ----FIEGYSGPSGKLQHL------------LAQIEELTASGRRVLIFSQYASMLQLIRE 977
Query: 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGAS 514
QL G+ + Y+DG+ ++R N + +A + L S KA G+NL GA
Sbjct: 978 QLES-----AGRTLFYLDGQTPAQERVDMCQRYN--AGEADLFLISLKAGGSGLNLTGAD 1030
Query: 515 RVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVF 574
V+L D+ WNP VE QAI RA+R+GQKRVV V L+ T+E L Q RK +++
Sbjct: 1031 TVILYDLWWNPAVEEQAIGRAHRMGQKRVVQVIRLVAEGTIEEKILELQQRK---RDLID 1087
Query: 575 PSSDGGGNDQTTASE 589
D GN + +E
Sbjct: 1088 EVIDAEGNASSALTE 1102
>gi|431040287|ref|ZP_19492794.1| Snf2 family protein [Enterococcus faecium E1590]
gi|431758255|ref|ZP_19546883.1| Snf2 family protein [Enterococcus faecium E3083]
gi|430562139|gb|ELB01392.1| Snf2 family protein [Enterococcus faecium E1590]
gi|430617918|gb|ELB54782.1| Snf2 family protein [Enterococcus faecium E3083]
Length = 1064
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 132/531 (24%), Positives = 227/531 (42%), Gaps = 93/531 (17%)
Query: 46 TGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNG 105
T H +G +L P+ + KM +Q++GF W + G G
Sbjct: 589 TMVQNLIHPEGYQAQL-PKGLNAKMREYQKQGFR--WLKMLGHYQF-------------G 632
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLN 165
I++ G GKT T+ FL + + +I+AP S++ W+ E KK+
Sbjct: 633 GILADEMGLGKTLQTIAFLLSEKEERESFSALIVAPASLIYNWQAEVKKFA--------- 683
Query: 166 KPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225
P LS + +++ K+ R ++ T I SY + ++ +
Sbjct: 684 -PSLS-------IQVINGNKKEREEL----------LAKDTDIRVTSYASLRQDLADYQS 725
Query: 226 SGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
I + DE +N T +AL + +R LSGTP +NN +EL + + +
Sbjct: 726 QKI-----DYLILDEAQMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLFATI 780
Query: 286 RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAPFVN 339
F + RE++ + A +I R R D++ LK+L EK + +
Sbjct: 781 MPGFF----PTKTKFRELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYSALT 832
Query: 340 VHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQ 399
+ TV L +R + + + F+K + G+ ++ C P+
Sbjct: 833 EEQKTVYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQI--CCD---------PRL 881
Query: 400 FFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR 459
F E + S KL ++K L++ +VL+FSQ+ LT++ E+L
Sbjct: 882 FIEDYQGGSGKLEQVKD-----------LLVAAKENKRRVLLFSQFTGMLTILQEELAEL 930
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
G Y+ G + R S ++ N + + + L S KA G+NL GA V+L
Sbjct: 931 -----GISTFYLRGSTKPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTVILY 983
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
D+ WNP +E QA RA+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 984 DLWWNPAIEEQAAGRAHRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1034
>gi|24047226|gb|AAH38596.1| CHD4 protein [Homo sapiens]
gi|167773199|gb|ABZ92034.1| chromodomain helicase DNA binding protein 4 [synthetic construct]
Length = 1937
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/524 (25%), Positives = 230/524 (43%), Gaps = 86/524 (16%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 723 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 767
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV------ALMD 182
+ H + ++ AP S ++ WE EF+ W D+ G +++ A+ + D
Sbjct: 768 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY-----VGDKDSRAIIRENEFSFED 822
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFV 237
N RG K R K S K F L++ EL I + + G +
Sbjct: 823 NAIRGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLI 868
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DE H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L
Sbjct: 869 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFL 928
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
+ +I+K ++++K+L + + P + + +++P +
Sbjct: 929 EEFADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELI 970
Query: 358 VILQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFES 403
V ++ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 971 VRVELSPMQKKYYKYIL-TRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA 1029
Query: 404 FDVDSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNW 462
+ + L +G +L L +VL+FSQ + L L+ + L H
Sbjct: 1030 PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH---- 1085
Query: 463 REGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVV 522
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1086 -EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSD 1144
Query: 523 WNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1145 WNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1187
>gi|380809128|gb|AFE76439.1| chromodomain-helicase-DNA-binding protein 4 [Macaca mulatta]
gi|383415429|gb|AFH30928.1| chromodomain-helicase-DNA-binding protein 4 [Macaca mulatta]
gi|384945024|gb|AFI36117.1| chromodomain-helicase-DNA-binding protein 4 [Macaca mulatta]
Length = 1905
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 719 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 763
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 764 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 821
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 822 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 867
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 868 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 927
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 928 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 969
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 970 ELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 1025
Query: 407 DSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 1026 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 1081
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1082 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 1138
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1139 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1183
>gi|431750941|ref|ZP_19539635.1| Snf2 family protein [Enterococcus faecium E2620]
gi|430616199|gb|ELB53123.1| Snf2 family protein [Enterococcus faecium E2620]
Length = 1064
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 132/531 (24%), Positives = 227/531 (42%), Gaps = 93/531 (17%)
Query: 46 TGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNG 105
T H +G +L P+ + KM +Q++GF W + G G
Sbjct: 589 TMVQNLIHPEGYQAQL-PKGLNAKMREYQKQGFR--WLKMLGHYQF-------------G 632
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLN 165
I++ G GKT T+ FL + + +I+AP S++ W+ E KK+
Sbjct: 633 GILADEMGLGKTLQTIAFLLSEKEERESFSALIVAPASLIYNWQAEVKKFA--------- 683
Query: 166 KPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225
P LS + +++ K+ R ++ T I SY + ++ +
Sbjct: 684 -PSLS-------IQVINGNKKEREEL----------LAKDTDIRVTSYASLRQDLADYQS 725
Query: 226 SGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
I + DE +N T +AL + +R LSGTP +NN +EL + + +
Sbjct: 726 QKI-----DYLILDEAQMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLFATI 780
Query: 286 RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAPFVN 339
F + RE++ + A +I R R D++ LK+L EK + +
Sbjct: 781 MPGFF----PTKTKFRELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYSALT 832
Query: 340 VHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQ 399
+ TV L +R + + + F+K + G+ ++ C P+
Sbjct: 833 EEQKTVYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQI--CCD---------PRL 881
Query: 400 FFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR 459
F E + S KL ++K L++ +VL+FSQ+ LT++ E+L
Sbjct: 882 FIEDYQGGSGKLEQVKD-----------LLVAAKENKRRVLLFSQFTGMLTILQEELAEL 930
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
G Y+ G + R S ++ N + + + L S KA G+NL GA V+L
Sbjct: 931 -----GISTFYLRGSTKPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTVILY 983
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
D+ WNP +E QA RA+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 984 DLWWNPAIEEQAAGRAHRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1034
>gi|417413954|gb|JAA53286.1| Putative chromatin remodeling complex wstf-iswi small subunit,
partial [Desmodus rotundus]
Length = 1766
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 134/511 (26%), Positives = 221/511 (43%), Gaps = 79/511 (15%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 580 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 624
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 625 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 682
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 683 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 728
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 729 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 788
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 789 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 830
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+ +
Sbjct: 831 ELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKM 889
Query: 407 DSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
+ L +G +L L +VL+FSQ + L L+ + L H EG
Sbjct: 890 PNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-----EG 944
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 945 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1004
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLE 556
+ QA SRA+R+GQ + V +Y +T ++E
Sbjct: 1005 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1035
>gi|417414010|gb|JAA53313.1| Putative chromatin remodeling complex wstf-iswi small subunit,
partial [Desmodus rotundus]
Length = 1916
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 134/519 (25%), Positives = 223/519 (42%), Gaps = 95/519 (18%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 730 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 774
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV------ALMD 182
+ H + ++ AP S ++ WE EF+ W D+ G +++ A+ + D
Sbjct: 775 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY-----VGDKDSRAIIRENEFSFED 829
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFV 237
N RG K R K S K F L++ EL I + + G +
Sbjct: 830 NAIRGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLI 875
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DE H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L
Sbjct: 876 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFL 935
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
+ +I+K ++++K+L + + P + + +++P +
Sbjct: 936 EEFADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELI 977
Query: 358 VILQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFES 403
V ++ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 978 VRVELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA 1036
Query: 404 FDVDSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLR 457
K+ D A I+ ++ +VL+FSQ + L L+ + L
Sbjct: 1037 -----PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLE 1091
Query: 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
H EG + +DG RQ +I+ N P +Q L ST+A GINL A V+
Sbjct: 1092 H-----EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVI 1146
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
+ D WNP + QA SRA+R+GQ + V +Y +T ++E
Sbjct: 1147 IYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1185
>gi|292606963|gb|ADE34162.1| chromodomain helicase DNA-binding protein 4 [Schmidtea mediterranea]
Length = 1868
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 141/520 (27%), Positives = 235/520 (45%), Gaps = 59/520 (11%)
Query: 99 STGGGNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGI 157
S G I++ G GKT T+ FL + Y + H + ++ AP S ++ WE EF+ W
Sbjct: 748 SFGNVVDTILADEMGLGKTIQTITFLYSLYKEGHSKGPFLVAAPLSTVINWEREFEFWAP 807
Query: 158 DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFE 217
D FY + G +++ AV + G +R K ++ +M G + F
Sbjct: 808 D--FYVVT---YVGDKDSRAVV---REHEFSYEEGAMRTSK-HACRMRQG----TRTKFH 854
Query: 218 KLVSGDELSGILLDLPG-----LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
L++ EL I L G + V DE H +N+ + F+ LS K +++L+GTP Q
Sbjct: 855 VLLTSYELISIDQALLGSISWEVLVVDEAHRLKNNQSKFFRILSSYKINYKLLLTGTPLQ 914
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L + E ++ +ISK +E++K L E
Sbjct: 915 NNLEELFHLLHFMTPEKFNDMQGFLDEFADISK------------------EEQVKRLHE 956
Query: 333 KIAP-FVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCK----------AVEGVKSFVE 381
+ + K VL + +P +V ++ Q + K +V+G S +
Sbjct: 957 ILGEHLLRRLKADVLTD-MPSKGEFIVRVELSPMQAKFYKYILTRNFDALSVKGGGSQIS 1015
Query: 382 L-NYCVSLLSV--HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTN-E 437
L N + L HP L P E+ + + L L +G +L +L T
Sbjct: 1016 LINIVMDLKKCCNHPYLFPSGSDEAPKLRNGAYEGLALIKASGKLELLYKMLPKLKTGGH 1075
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ +T +++ L ++ G + +DG ++RQ SI+ N P S + +
Sbjct: 1076 RVLIFSQ----MTRLLDILEDFMDYM-GYKFERIDGAVTGQQRQDSIDRFNAPDSVSFVF 1130
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T T+E
Sbjct: 1131 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQSNKVMIYRFVTRNTVEE 1190
Query: 558 DKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILE 597
+ +K+ +++V GG + + + L D+IL+
Sbjct: 1191 RVTQVAKKKMMLTHLVVRPGLGGKGGASMSKKEL-DEILK 1229
>gi|170577655|ref|XP_001894090.1| Type III restriction enzyme, res subunit family protein [Brugia
malayi]
gi|158599485|gb|EDP37070.1| Type III restriction enzyme, res subunit family protein [Brugia
malayi]
Length = 805
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 145/578 (25%), Positives = 245/578 (42%), Gaps = 110/578 (19%)
Query: 27 VDPSFLDDLNSRDSGFDSQTGCDPFTHAQGTVWEL-VPRDVRKKMFPHQREGFEFIWKNI 85
D F+ L RD+ D D G V + V + + + PHQ++G F+++
Sbjct: 128 TDQIFISPLFGRDNPLD--LVLDETKDDDGFVRRIAVDVQIARHLRPHQKDGVAFMYRC- 184
Query: 86 AGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVI-----IA 140
LKNS G +++ G GKT T+ + A +K +P+I +
Sbjct: 185 --------LKNS-----HGGALLADEMGLGKTVQTISLITALVKKRLNQKPIIRKCIIVV 231
Query: 141 PRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLY 200
P S+L W EF +W P+ L K K KL
Sbjct: 232 PTSLLNNWYAEFMRWS----------PQ-------TQTMLFRILKSTDVK-------KLI 267
Query: 201 SWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKT 260
S++ + I +SY + + + +LS + +DL V DE H +N + + + L +
Sbjct: 268 SYRNTSMIAIVSYEMIAR--TAAKLSVVSVDL---LVCDEAHRIKNLNGRLREQLQILHA 322
Query: 261 RRRIILSGTPFQNNFQELENTLSLVRQE-FGEVLRTVRKSGREISKAKHASLISSIGRCA 319
+RR++L+GTP QN+ +E + ++ R + F L K+ E+ + L+S +
Sbjct: 323 QRRLLLTGTPMQNDLEEFYSLVNFARPDLFISFLEF--KNLCEMESTRFNELLSEV---- 376
Query: 320 NHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSF 379
L+ E V+ + LP +V +P Q C + +K F
Sbjct: 377 ------MLRRTAE------------VIHDLLPPKIDYIVWCRPSALQ---CSIYKNLKKF 415
Query: 380 VELNYCVSL-----LSVHPSLLPQQ------------------FFESFDVDSAKLARLKL 416
+ ++ + L HP LL Q F +SF +
Sbjct: 416 LPYDHLTLIDALRKLCNHPFLLYQSMVVKRQTCKVEEREFYNAFLQSFPNTFNAFSLSTT 475
Query: 417 DPEAGIKTRFLLILLEL-STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
D +G F+ +L EKV++ S + + L L+ E R + +L +DG
Sbjct: 476 D--SGKLNVFVELLATFREQEEKVVIVSNFTQTLDLLEELCRTLY-----YTILRLDGST 528
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
+ KKR + N S++ L S KA G+NLVGA+R++L D WNP V+ QA++R
Sbjct: 529 EAKKRMEIVEEFNSLSNKNYAFLLSAKAGGLGLNLVGANRMILFDSDWNPAVDMQAMARI 588
Query: 536 YRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R GQ++ H++ LIT+ T++ L+RQ +K + +V
Sbjct: 589 WRQGQEKPCHIFRLITAGTVDEKILQRQIKKSSLNTIV 626
>gi|399058630|ref|ZP_10744693.1| DNA/RNA helicase, superfamily II, SNF2 family [Novosphingobium sp.
AP12]
gi|398040640|gb|EJL33737.1| DNA/RNA helicase, superfamily II, SNF2 family [Novosphingobium sp.
AP12]
Length = 1138
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 140/494 (28%), Positives = 211/494 (42%), Gaps = 63/494 (12%)
Query: 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR--PV-IIAPRSMLLTWEEEFKKWGI 157
G G G I++ G GKT L + Y++ CR P+ I+AP S+L W+ E ++
Sbjct: 691 GAGMGGILADDMGLGKT-LQAIAHILYVRQQRTCRKGPILIVAPTSVLPNWQAELARFAP 749
Query: 158 DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFE 217
+I F + P RY L IL SY L
Sbjct: 750 NIEFLLWHGPG--------------------------RYEALGERLADAEILLTSYPL-- 781
Query: 218 KLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQE 277
L DEL + L V DE H +N T FKA S +K ++ I L+GTP +N +
Sbjct: 782 -LARDDEL--LAQYHYELVVLDEAHVLKNPKTAGFKAASSLKAKQVIALTGTPVENRLTD 838
Query: 278 LENTLSLVRQEFGEVLRTVRKSGRE-ISKAKHASLISSIGRCANHRDDEKLK-ELKEKIA 335
L + SL + RK+ R I K A+ +S+GR + K E+ ++
Sbjct: 839 LWSLASLTNPGLSGTFDSFRKTYRTPIEKHGDANAKASLGRRMRPFMLRRTKDEVASELP 898
Query: 336 PFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSL--LSVHP 393
P + + E+ L S +L ++ + + + L+ + L + P
Sbjct: 899 PKTIISERIEFSEAQLRLYESQRLLMQARVREEIDRVGLMRSQIIVLDAMLKLRQICCDP 958
Query: 394 SLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL-STNEKVLVFSQYIEPLTLI 452
+LLP++ DV SAK ARL L +L EL +V+VFSQ+ L LI
Sbjct: 959 ALLPREL--GIDVPSAKRARL------------LEMLDELVEEGRRVIVFSQFTTMLDLI 1004
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
+ L + + Y + + R + S ++L S KA GINL
Sbjct: 1005 AKDL-------DRMAIRYEQLRGTTRNRARPVERFQ--SGAVPLILVSLKAGGAGINLTA 1055
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNM 572
A V+L D WNP VE QAI RA+R+GQ + V V+ LI + T+E L Q RK +N+
Sbjct: 1056 ADTVILYDPWWNPAVEAQAIDRAHRIGQAKPVFVHRLIATGTIEEKILALQGRKQDLANV 1115
Query: 573 VFPSSDGGGNDQTT 586
++ + G+ T
Sbjct: 1116 LWDDTAQTGSTALT 1129
>gi|380798783|gb|AFE71267.1| chromodomain-helicase-DNA-binding protein 4, partial [Macaca mulatta]
Length = 1847
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 661 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 705
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 706 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 763
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 764 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 809
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 810 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 869
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 870 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 911
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 912 ELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 967
Query: 407 DSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 968 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 1023
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1024 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 1080
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1081 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1125
>gi|339256750|ref|XP_003370251.1| 7 transmembrane receptor [Trichinella spiralis]
gi|316965584|gb|EFV50276.1| 7 transmembrane receptor [Trichinella spiralis]
Length = 2083
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 147/575 (25%), Positives = 239/575 (41%), Gaps = 101/575 (17%)
Query: 51 FTHAQGTVWELVPRDVR--KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCII 108
FT G VP D+ K + PHQREG F++K I G + ++ G
Sbjct: 1450 FTLPDGRQCGEVPVDISLAKNLRPHQREGILFLYKCIIGYHSTN--RHGAILGKKKLFYF 1507
Query: 109 SH---------------APGTGKTGLTLVFLQAYMKLHP------RCRPVIIAPRSMLLT 147
SH G GK+ + + MK P R +++AP S+L
Sbjct: 1508 SHLIQRVAFFFQTSVADEMGLGKSLQCIALVSTLMKRGPFDGRALLRRILLLAPCSLLDN 1567
Query: 148 WEEEFKKWGIDIPFYNLNKPEL-SGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGT 206
W++EF KW + + L+ + GK+ N A ++ R
Sbjct: 1568 WKKEFDKW---LKLHRLSIVLVRDGKDVNRACSMNHASLRS------------------- 1605
Query: 207 GILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIIL 266
+ +SY F + + + SG + + DE H +N + + RR++L
Sbjct: 1606 -VTIVSYETFARHANRLQESGQSSSRFDMLICDEAHRLKNPMVRASYLIRQFPVERRLLL 1664
Query: 267 SGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKSGREISKAKHASLISSIGRCANHRDDE 325
+GTP QNN QEL L GE + + +++S+ A+ DD+
Sbjct: 1665 TGTPVQNNLQELYVLCDLANPGLLGE--------AAQFRASFEKPILASMSAQADE-DDQ 1715
Query: 326 -----KLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV------- 373
K EL++ ++ F+ +++ LP V +P Q +L + V
Sbjct: 1716 IYGRWKGDELRQLVSTFLLRRTRQIMRRYLPSKVEYAVFCKPSTLQSKLFETVAEEARLA 1775
Query: 374 --EGVKSFVELNYCVSLL------SVHPSLLPQQFFESFDVDSAKLARLKLDP----EAG 421
+G + E +C++ L HP++L ++ + + L P + G
Sbjct: 1776 LDQGTAAGSE--FCLTFLDYMRKICAHPAVLYNSLQQAVGRPNVTVL-LSCYPACFTDVG 1832
Query: 422 I------KTRFLLILLELSTN----EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYM 471
+ K L LLEL EKV+V S + E L +I + G +
Sbjct: 1833 VRVGDSGKLTVLAQLLELVRRQYPAEKVVVASNFTESLNII-----ESYCNGMGFSSFRL 1887
Query: 472 DGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531
DG DV RQ ++ N + + L STKA G+NL A+R+VL D WNP +RQA
Sbjct: 1888 DGSTDVSSRQRMVDRFNTTTDDTFLFLLSTKAGGMGLNLTAANRLVLYDCDWNPAYDRQA 1947
Query: 532 ISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
++R +R GQ+RV H+Y L+T+ ++E + +RQ RK
Sbjct: 1948 MARIWRDGQRRVCHIYRLLTTGSIEENIFQRQIRK 1982
>gi|302411025|ref|XP_003003346.1| DNA repair and recombination protein RAD26 [Verticillium albo-atrum
VaMs.102]
gi|261358370|gb|EEY20798.1| DNA repair and recombination protein RAD26 [Verticillium albo-atrum
VaMs.102]
Length = 1117
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 146/556 (26%), Positives = 226/556 (40%), Gaps = 111/556 (19%)
Query: 62 VPRDVRKKMFPHQREGFEFI---WKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
+P D+ +F +Q+ G +++ + GGI DE+ G GKT
Sbjct: 344 LPGDIHPSLFSYQKTGVQWLAELYSQNVGGIVGDEM------------------GLGKTV 385
Query: 119 LTLVFLQAYMKLHPRCRPVII-APRSMLLTWEEEFKKW---------------GIDIPFY 162
+ F+ A +PVII AP ++L W EF +W I++
Sbjct: 386 QAIAFIAALHYSKKLTKPVIIVAPATVLRQWVNEFHRWWPALRVSILHSSGSGMINLRED 445
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222
+ ++ SG+ + ++D R G V + Y L +++
Sbjct: 446 DTDEETHSGRRDKSVRKIVD-RVVKHGHVLVTTYNGLQTYQ------------------- 485
Query: 223 DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
DEL + D V DEGH RN + + ++T RIILSGTP QNN EL +
Sbjct: 486 DELLHVEWDYA---VLDEGHKIRNPNAEITVLCKELRTPNRIILSGTPVQNNLSELWSLF 542
Query: 283 SLVRQEFGEVLRTVRKSGR-EISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPF 337
+ L T R I + +A I + +CA + LKE I+ +
Sbjct: 543 DFIYPMRLGTLVTFRTQFEVPIKQGGYAGATNLQILTAEKCA--------ETLKEAISQY 594
Query: 338 VNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSV------ 391
+ + LP V+ F K + +E K F+ + +LS
Sbjct: 595 LLQRLKIDVAADLPSKTERVL------FCKMTDRQLEAYKQFLNSDAVNQILSARRKSLY 648
Query: 392 ----------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKV 439
HP L+ D DPE K + LL++ K
Sbjct: 649 GIDILRKICNHPDLIDPHLQNKAGYDWG-------DPEKSGKMLVVRNLLQIWKKLGHKT 701
Query: 440 LVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIML 498
L+FSQ L +I + L E + + MDG+ ++KRQS I+ N DP + I L
Sbjct: 702 LLFSQSKMMLNVIEKFL----GGLETVKYVRMDGETSIEKRQSLIDQFNTDP--EIDIFL 755
Query: 499 ASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWD 558
+T+ G+NL GA+R+++ D WNP + QA RA+RLGQ R V +Y L+T+ T+E
Sbjct: 756 LTTRTGGLGVNLTGANRIIIFDPDWNPSTDMQARERAWRLGQTRSVEIYRLMTAGTIEEK 815
Query: 559 KLRRQARKVWWSNMVF 574
RQ K + +N V
Sbjct: 816 IYHRQIFKQFMTNKVL 831
>gi|389641265|ref|XP_003718265.1| chromodomain helicase DNA binding protein 1 [Magnaporthe oryzae
70-15]
gi|351640818|gb|EHA48681.1| chromodomain helicase DNA binding protein 1 [Magnaporthe oryzae
70-15]
Length = 1649
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 138/527 (26%), Positives = 236/527 (44%), Gaps = 79/527 (14%)
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNL 164
C+++ G GKT F+ A P+C P +++ P S W E K+W D+
Sbjct: 860 CVLADEMGLGKTIQICAFMAALALNEPKCWPFLVVVPNSTCPNWRREIKQWVPDLRVVCY 919
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
+ G + +AL N G+ + +V + S+ + +S R + K V
Sbjct: 920 H-----GGKVPQDLALR-NELFPDGRDNMKAHVVVMSYDSASD---MSTRTYFKNVHWKA 970
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
L V DEG +ND ++ AL +K RI+L+GTP QNN +EL N +
Sbjct: 971 L-----------VVDEGQRLKNDQNILYVALRAMKIPFRILLTGTPLQNNKRELFNLVQF 1019
Query: 285 VRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP-FVNVHKG 343
I +K+A+ + R A E + +L ++I P F+ K
Sbjct: 1020 ------------------IDSSKNAAKLDE--RFA-ELTKENIPQLHDEIKPYFLRRTKA 1058
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVE----------------GVKSFVELNYCVS 387
VL+ LP + +V + Q++LCK++ GVK LN +
Sbjct: 1059 EVLK-FLPPMGQVIVPVTMSFVQEKLCKSIMTKSPQLIQAIFAKNKMGVKERGSLNNILM 1117
Query: 388 LLS---VHPSLLPQQFFES-FDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFS 443
L HP + + ++ D ++ + ++ P+ + +R L L E +VL+FS
Sbjct: 1118 QLRKCLCHPFVYSRDVEDTTLDPETMQRNLIEASPKLVLLSRMLPKLKE--KGHRVLIFS 1175
Query: 444 QYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLAST 501
Q+++ L +I + L G LY +DG ++Q I+ N PSS+ L ST
Sbjct: 1176 QFLDQLDIIEDFL-------AGLGFLYQRLDGTMSSLEKQKRIDEFNAPSSELFAFLLST 1228
Query: 502 KACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561
+A GINL A V+++D +NP + QA+SRA+R+GQ V + L+T ++E ++
Sbjct: 1229 RAGGVGINLATADTVIIMDPDFNPHQDLQALSRAHRIGQMNKVLCFQLMTKGSVEEKIMQ 1288
Query: 562 RQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSE 608
+K+ +++ + D D+ A + LE + QL+N+ +E
Sbjct: 1289 IGRKKMALDHVLIEAMD----DEEAAPDDLESILKHGAEQLFNDDNE 1331
>gi|391333969|ref|XP_003741382.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein 1-like [Metaseiulus occidentalis]
Length = 1456
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 135/509 (26%), Positives = 214/509 (42%), Gaps = 96/509 (18%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
N CI++ G GKT T+ FL H P +++ P S L+ W+ EF W
Sbjct: 460 ANSCILADEMGLGKTIQTISFLNYLFNDHQLYGPFLMVVPLSTLVAWQREFVNWA----- 514
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
PEL N L D R R IR + Y + G F L++
Sbjct: 515 -----PEL-----NVVTYLGDVLSRER-----IREFEWY-------VTGTKKIKFNVLLT 552
Query: 222 GDELSGILLDLP-------GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNN 274
E+ +L D + DE H +ND+ ++K L +T+ R++++GTP QN+
Sbjct: 553 TPEI--MLKDATYVGEVDWAVLAVDEAHRLKNDEAQLYKTLQDFRTKHRLLITGTPLQNS 610
Query: 275 FQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRD--DEKLKELKE 332
+EL L + + T H D D+ +L +
Sbjct: 611 LKELWALLHFIEPDRFPTWDTFE---------------------GEHHDAQDKGYSKLHK 649
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEG----- 375
++ P++ +++SLP LR + LQ ++ K L K V+G
Sbjct: 650 QLEPYLLRRVKKDVEKSLPAKVERILRVEMTALQKQYYKWILTKNYKMLTKGVKGSHASF 709
Query: 376 VKSFVELNYCVS--LLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL 433
V VEL C + LL P Q +L +L + + L+
Sbjct: 710 VNIMVELKKCCNHCLLIRLPEATNGQ---------DELTQL-IRGSGKLLLLDKLLCRLK 759
Query: 434 STNEKVLVFSQYIEPLTLIMEQLR-HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
T +VL+FSQ + L +I E L+ RF ++ +DG + R+ +++ N +S
Sbjct: 760 QTGHRVLIFSQMVRMLDIISEYLKMRRFQFQR------LDGSIKGETRKQALDHFNAENS 813
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA +RA+R+GQK V++Y L+T
Sbjct: 814 QDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTK 873
Query: 553 ETLEWDKLRRQARKVWWSNMVFPSSDGGG 581
++E D + R RK+ ++V D G
Sbjct: 874 GSVEEDIIERAKRKMVLDHLVIQRMDTSG 902
>gi|354486302|ref|XP_003505320.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1 [Cricetulus
griseus]
gi|344249390|gb|EGW05494.1| Chromodomain-helicase-DNA-binding protein 1 [Cricetulus griseus]
Length = 1710
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 131/501 (26%), Positives = 214/501 (42%), Gaps = 77/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 497 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 554
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
N V L D R + ++ L + ++ IL +Y + L
Sbjct: 555 -------------NAVVYLGD--INSRNMIRTHEWMHLQTKRLKFNILLTTYEIL--LKD 597
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+ +EL +
Sbjct: 598 KAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSL 654
Query: 282 LSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
L + E F E GRE A L +++ PF+
Sbjct: 655 LHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHKELEPFL 692
Query: 339 NVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-----FVE 381
+++SLP LR + LQ ++ K L K +G S +E
Sbjct: 693 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 752
Query: 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLV 441
L C + H L+ F L L + + L++ +VL+
Sbjct: 753 LKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRERGNRVLI 807
Query: 442 FSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500
FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+ L S
Sbjct: 808 FSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSEDFCFLLS 861
Query: 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKL 560
T+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T ++E D L
Sbjct: 862 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL 921
Query: 561 RRQARKVWWSNMVFPSSDGGG 581
R +K+ ++V D G
Sbjct: 922 ERAKKKMVLDHLVIQRMDTTG 942
>gi|301773764|ref|XP_002922290.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein 4-like [Ailuropoda melanoleuca]
Length = 1906
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 720 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 764
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 765 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 822
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 823 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 868
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 869 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 928
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 929 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 970
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 971 ELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 1026
Query: 407 DSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 1027 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 1082
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1083 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 1139
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1140 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1184
>gi|157134600|ref|XP_001663323.1| chromodomain helicase DNA binding protein [Aedes aegypti]
gi|108870421|gb|EAT34646.1| AAEL013136-PA [Aedes aegypti]
Length = 1983
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 141/550 (25%), Positives = 235/550 (42%), Gaps = 83/550 (15%)
Query: 65 DVRKKMFPHQREGFEFI---WKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
D ++ P+Q EG ++ W N I DE+ G GKT T
Sbjct: 719 DTGMRLHPYQLEGINWLRYSWANDTDTILADEM------------------GLGKTIQTA 760
Query: 122 VFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + Y + H R ++ P S ++ WE EF+ W D+ Y + G +++ A+
Sbjct: 761 TFLYSLYKEGHCRGPFLVAVPLSTIINWEREFETWAPDL--YCIT---YVGDKDSRAIIR 815
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
G V R K+ + + +L SY ++VS D ++ L V DE
Sbjct: 816 EHELSFEEGAVRGGRASKIRASTLKFNVLLTSY----EMVSFDAACLGSIEWAALVV-DE 870
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +++ + FK LS +++L+GTP QNN +EL + L+
Sbjct: 871 AHRLKSNQSKFFKTLSNYSINYKLLLTGTPLQNNLEELFHLLNF---------------- 914
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
++K K L + A+ ++++K+L E + P + + +++P +V +
Sbjct: 915 --LNKNKFNDLTTFQAEFADINKEDQVKKLHEMLGPHMLRRLKADVLKNMPTKSEFIVRV 972
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFE---- 402
+ + QK+ K + ++F LN SL+++ HP L E
Sbjct: 973 ELSQMQKKYYKYI-LTRNFEALNPRGGGGACSLINIMMDLKKCCNHPYLFQAAVEEAPLG 1031
Query: 403 ---SFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR 459
S+++ S A KL + + L L E +VL+FSQ + L I+E
Sbjct: 1032 PGGSYEIQSLTKAAGKL----VLLEKMLKQLKE--QGHRVLIFSQMTKMLD-ILEDFLEG 1084
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
F ++ + +DG RQ +I+ N P +Q L STKA GINL A V++
Sbjct: 1085 FGYKYER----IDGGITGTLRQEAIDRFNAPGAQQFCFLLSTKAGGLGINLATADTVIIY 1140
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDG 579
D WNP + QA SRA+R+GQ V +Y +T ++E + RK+ +++V G
Sbjct: 1141 DSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMG 1200
Query: 580 GGNDQTTASE 589
G T E
Sbjct: 1201 GKGANFTKQE 1210
>gi|431763720|ref|ZP_19552269.1| Snf2 family protein [Enterococcus faecium E3548]
gi|430622093|gb|ELB58834.1| Snf2 family protein [Enterococcus faecium E3548]
Length = 1064
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 132/531 (24%), Positives = 227/531 (42%), Gaps = 93/531 (17%)
Query: 46 TGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNG 105
T H +G +L P+ + KM +Q++GF W + G G
Sbjct: 589 TMVQNLIHPEGYQAQL-PKGLNAKMREYQKQGFR--WLKMLGHYQF-------------G 632
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLN 165
I++ G GKT T+ FL + + +I+AP S++ W+ E KK+
Sbjct: 633 GILADEMGLGKTLQTIAFLLSEKEERESFSALIVAPASLIYNWQAEVKKFA--------- 683
Query: 166 KPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225
P LS + +++ K+ R ++ T I SY + ++ +
Sbjct: 684 -PSLS-------IQVINGNKKEREEL----------LAKDTDIRVTSYASLRQDLADYQS 725
Query: 226 SGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
I + DE +N T +AL + +R LSGTP +NN +EL + + +
Sbjct: 726 QKI-----DYLILDEAQMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLFATI 780
Query: 286 RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAPFVN 339
F + RE++ + A +I R R D++ LK+L EK + +
Sbjct: 781 MPGFF----PTKTKFRELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYSALT 832
Query: 340 VHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQ 399
+ TV L +R + + + F+K + G+ ++ C P+
Sbjct: 833 EEQKTVYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQI--CCD---------PRL 881
Query: 400 FFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR 459
F E + S KL ++K L++ +VL+FSQ+ LT++ E+L
Sbjct: 882 FIEDYQGGSGKLEQVKD-----------LLVAAKENKRRVLLFSQFTGMLTILQEELAEL 930
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
G Y+ G + R S ++ N + + + L S KA G+NL GA V+L
Sbjct: 931 -----GISTFYLRGSTKPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTVILY 983
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
D+ WNP +E QA RA+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 984 DLWWNPAIEEQAAGRAHRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1034
>gi|327263233|ref|XP_003216425.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Anolis
carolinensis]
Length = 1803
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 133/507 (26%), Positives = 224/507 (44%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W
Sbjct: 499 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWA----- 553
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
P++ N V L D R ++++ W ++ IL +Y +
Sbjct: 554 -----PQM-----NAVVYLGDITSRN--------VIRMHEWMHPQTKRLKFNILLTTYEI 595
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
K S L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 596 LLKDKSF--LGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 650
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE+ A L +
Sbjct: 651 KELWSLLHFIMPEKFSSWEDFEEEHGKGREVGYA----------------------SLHK 688
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 689 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 748
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + + + P E ++ A ++ + + + L+ L E +
Sbjct: 749 LNIMMELKKCCNHCYL---IKPPDDNEFYNKQEALQNLIRSSGKLILLDKLLIRLRERGS 805
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 806 --RVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSED 857
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 858 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 917
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 918 VEEDILERAKKKMVLDHLVIQRMDTTG 944
>gi|348523828|ref|XP_003449425.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3 [Oreochromis
niloticus]
Length = 2125
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 141/531 (26%), Positives = 237/531 (44%), Gaps = 67/531 (12%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + K H + ++ AP S ++ WE EF+ W D F
Sbjct: 769 GTDTILADEMGLGKTIQTIVFLYSLFKEGHTKGPFLVSAPLSTIINWEREFEMWAPD--F 826
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIRY---VKLYSWKMGTGILGLS 212
Y + +G +++ A+ + D +G K +R +K + +L S
Sbjct: 827 YVVT---YTGDKDSRAIIRENEFSFDDTAVKGGKKAFKLRREAPIKFH-------VLLTS 876
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y +LV+ D+ + +D L V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 877 Y----ELVTIDQTALKSIDWACLVV-DEAHRLKNNQSKFFRRLNDYKIDYKLLLTGTPLQ 931
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + L + +ISK ++++K+L +
Sbjct: 932 NNLEELFHLLNFLTPNRFNNLEGFLEEFADISK------------------EDQIKKLHD 973
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + K+F LN VS
Sbjct: 974 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKLI-LTKNFEALNSKGGGNQVS 1032
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTN-E 437
LL++ HP L P E+ S L +G T +L +L
Sbjct: 1033 LLNIMMDLKKCCNHPYLFPVASMEAPKTPSGAYEGSALTKASGKLTLLQKMLRKLKEQGH 1092
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VLVFSQ + L L+ + L EG + +DG RQ +I+ N P +
Sbjct: 1093 RVLVFSQMTKMLDLLEDFLDC-----EGYKYERIDGGITGALRQEAIDRFNAPGACQFCF 1147
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T ++E
Sbjct: 1148 LLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEE 1207
Query: 558 DKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSE 608
+ RK+ +++V G T E L+D + +L+ + +E
Sbjct: 1208 RITQVAKRKMMLTHLVVRPGLGSKAGSMTKQE-LDDILKFGTEELFKDEAE 1257
>gi|345564545|gb|EGX47506.1| hypothetical protein AOL_s00083g315 [Arthrobotrys oligospora ATCC
24927]
Length = 1145
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 144/561 (25%), Positives = 240/561 (42%), Gaps = 108/561 (19%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P D+ + +F +Q+ ++W L TGG I+ G GKT T+
Sbjct: 378 LPGDIAQSLFDYQKTAVNWLWN----------LHAKQHTGG----ILGDEMGLGKTIQTI 423
Query: 122 VFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKW--------------GIDIPFYNLNK 166
F+ +PV I+AP ++L W EF KW G+ + K
Sbjct: 424 AFIAGLHYSQLLTKPVLIVAPATVLKQWCNEFHKWWPCLRVSILHSSGSGM-LSIAADKK 482
Query: 167 PELSGKENNGAVALMDN---RKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD 223
E + ++ G + ++++ K + ++ VK + + GLS + KL
Sbjct: 483 AEETIDDDEGLLEVLESAAPSKAQKAAKKIVDKVKAKGHILISTYTGLS--TYHKL---- 536
Query: 224 ELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
LLD V DEGH RN + + A ++++ R ILSGTP QNN +EL +
Sbjct: 537 -----LLDTDWECVVLDEGHKIRNPEAKITIAAKQLRSTTRFILSGTPIQNNLRELWSLF 591
Query: 283 SLV-------RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIA 335
V Q F E + K G +++ I + +CA L+E I
Sbjct: 592 DFVYPGKLGIYQVFNENIAIPIKLGG--YAGANSTQIHTAFKCA--------VVLRELIN 641
Query: 336 PFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV----EGVKSFVELNYCVSLLSV 391
P++ L L+ V +L P + Q C V E +++++ +LS
Sbjct: 642 PYM-----------LRRLKADVAVLPPKQDQVLFCNLVVEQKEAYENYIKSPEAFDILSG 690
Query: 392 HPSLLPQQFFESFDV--------DSAKLARLKLD-------PEAGIKTRFLLILLEL--S 434
+L DV D +L +D P K + + LL+
Sbjct: 691 KRDVLA-----GIDVLRKICNHPDLCNREKLSIDHDYDYGNPVRSGKMQIVKGLLKAWEK 745
Query: 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVL-NDPSSQ 493
N K L+FSQ + L ++ + ++ ++ + L +DG D+K RQS ++ NDP+ Q
Sbjct: 746 DNLKCLIFSQGTQMLDILEKFVKKKYRY------LRLDGTTDIKLRQSMVDQYNNDPTLQ 799
Query: 494 ARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553
+ L +TK G+NL GA+R+++ D WNP + QA R++RLGQK V +Y L++
Sbjct: 800 --VFLLTTKVGGYGLNLTGATRIIIFDPDWNPSNDMQARERSWRLGQKHEVRIYRLLSRG 857
Query: 554 TLEWDKLRRQARKVWWSNMVF 574
T+E +RQ K + + +
Sbjct: 858 TIEEKIYQRQLYKQFLTKKIL 878
>gi|365767123|gb|EHN08611.1| Rdh54p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 924
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 144/569 (25%), Positives = 248/569 (43%), Gaps = 77/569 (13%)
Query: 72 PHQREGFEFIWKNIAG-------GIDLDELKNS---TSTGGGNGCIISHAPGTGKTGLTL 121
PHQREG +F++ + G D+D S + +GC+++ G GKT +++
Sbjct: 264 PHQREGVKFMYDCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLMSI 323
Query: 122 VFL----------------QAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNL 164
+ Q+ + L C+ + ++ P +++ W+ EF KW NL
Sbjct: 324 TLIWTLIRQTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGNWKREFGKW------LNL 377
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
++ G + L K+ + ++K+ + +L + Y EKL+S E
Sbjct: 378 SRI--------GVLTLSSRNSPDMDKMAVRNFLKV---QRTYQVLIIGY---EKLLSVSE 423
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
L + V DEGH +N + + L + RR+++L+GTP QN+ E +
Sbjct: 424 ELEKNKHLIDMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDF 483
Query: 285 VRQE-FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
+ G R+ I++A+ + + + +E+ KE+ E F+
Sbjct: 484 INPGILGSFASFKRRFIIPITRARDTA--NRYNEELLEKGEERSKEMIEITKRFILRRTN 541
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAV-EGVK-SFVELNYCVSL--------LSVHP 393
+L++ LP ++ +P Q K + +G + F +L + SL + P
Sbjct: 542 AILEKYLPPKTDIILFCKPYSQQILAFKDILQGARLDFGQLTFSSSLGLITLLKKVCNSP 601
Query: 394 SLLPQQ-FFESFDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPL 449
L+ +++S D+ +G K + L+ LLE T EKV+V S Y + L
Sbjct: 602 GLVGSDPYYKSHIKDTQSQDSYSRSLNSG-KLKVLMTLLEGIRKGTKEKVVVVSNYTQTL 660
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGI 508
+I E L + G +DG K+R S + N +P+ L S K+ G+
Sbjct: 661 DII-ENLMNM----AGMSHCRLDGSIPAKQRDSIVTSFNRNPAIFG--FLLSAKSGGVGL 713
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NLVGASR++L D WNP V+ QA+SR +R GQK+ +Y L+T+ ++ L+RQ K
Sbjct: 714 NLVGASRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNS 773
Query: 569 WSNMVFPSSD----GGGNDQTTASEPLED 593
S S+ ND E L+D
Sbjct: 774 LSQKFLGDSEMRNKESSNDDLFNKEDLKD 802
>gi|257876739|ref|ZP_05656392.1| Snf2 family protein [Enterococcus casseliflavus EC20]
gi|257810905|gb|EEV39725.1| Snf2 family protein [Enterococcus casseliflavus EC20]
Length = 1054
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 119/473 (25%), Positives = 204/473 (43%), Gaps = 79/473 (16%)
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNL 164
G I++ G GKT T+ +L + + + +I+AP S+ W++E K++
Sbjct: 623 GGILADEMGLGKTVQTISYLLSEKQEKQKLNALIVAPASLTFNWQQEIKRFA-------- 674
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
P +S +G + + V + Y L D
Sbjct: 675 --PTISASVISGTKEEREGQMAQPADVRITSYASLRQ---------------------DI 711
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
+ LDL L + DE +N T +AL ++ +R LSGTP +NN +EL + +
Sbjct: 712 DAYQALDLTCL-ILDEAQMVKNSATKTAQALRSLEVPQRFALSGTPIENNLEELWSLFQM 770
Query: 285 V-------RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPF 337
+ +Q+F E+ S +EI+K ++ R H +KL+
Sbjct: 771 IMPGFFPNKQKFKEL------STQEIAKMIKPFILRRDKRSVLHDLPQKLET---NYYSV 821
Query: 338 VNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLP 397
+ + + L +R + + F+K + G+ ++ C P
Sbjct: 822 LTEEQKKIYLAYLRQMREEIAQMDSTSFRKNRISILAGLTRLRQI--CCD---------P 870
Query: 398 QQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLR 457
+ F E ++ S KL ++K L+L +VL+FSQ+ L++I E+L
Sbjct: 871 RLFVEDYEGSSGKLEQVKD-----------LLLAAKENGRRVLLFSQFTSMLSIIEEELA 919
Query: 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
+EG E Y+ G + R + ++ N S + + L S KA G+NL GA V+
Sbjct: 920 -----QEGFESFYLRGSTPPQDRLTMVDAFN--SGEKDVFLISLKAGGTGLNLTGADTVI 972
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
L D+ WNP VE QA RA+R+GQK VV V+ +I T+E D L+++ R+++
Sbjct: 973 LYDLWWNPAVEEQAAGRAHRIGQKNVVEVWRMIAEGTIEERMDALQQEKRELF 1025
>gi|448112637|ref|XP_004202147.1| Piso0_001627 [Millerozyma farinosa CBS 7064]
gi|359465136|emb|CCE88841.1| Piso0_001627 [Millerozyma farinosa CBS 7064]
Length = 1377
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 142/554 (25%), Positives = 241/554 (43%), Gaps = 88/554 (15%)
Query: 71 FPH-QREGFEFIWKN---IAGGIDLDELKNSTSTG----------GGNGCIISHAPGTGK 116
+PH QR FE + K I G EL++ TG NG I++ G GK
Sbjct: 321 YPHNQRPRFEKLVKQPLFIKNG----ELRDFQLTGLNWMAFLWSRNENG-ILADEMGLGK 375
Query: 117 TGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENN 175
T T+ FL + + P +++ P S + +W+E F+KW D+ N
Sbjct: 376 TVQTVSFLSWLIYARRQNGPHLVVVPLSTITSWQETFEKWAPDV---------------N 420
Query: 176 GAVALMDNRKRGRGKVGLIRYVKLY-SWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG 234
L ++ R IR + Y + K+ IL +Y L EL I
Sbjct: 421 CVYYLGNSAARK-----TIRDYEFYQNKKLKFNILLTTYEYV--LKDRSELGSIKWQF-- 471
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294
DE H +N+++ ++++L K R++++GTP QNN +EL + + +
Sbjct: 472 -LAVDEAHRLKNEESSLYESLKSFKVGNRLLITGTPLQNNIKELNALCNFLMPGRFNI-- 528
Query: 295 TVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLR 354
G+EI N ++ +K+L++ I PF+ +++SLP
Sbjct: 529 -----GQEID-----------FETPNREQEQYIKDLQKNIQPFILRRLKKDVEKSLPSKS 572
Query: 355 HSVVILQPDEFQKRLCKAVEGVKSFVELNYC-----VSLLSVHPSLL-----PQQFFESF 404
++ ++ + Q + + K++ LN +SLL+V L P F +
Sbjct: 573 ERILRVELSDLQTEYYRNI-LTKNYSALNAGNKGSQISLLNVVSELKKASNHPYLFDGAE 631
Query: 405 DVDSAKLARLKLDP--EAGIKTRFLLILLELSTN------EKVLVFSQYIEPLTLIMEQL 456
+ AK + D I + ++LLE N +VL+FSQ + L ++ + L
Sbjct: 632 ERALAKASSTSRDNILRGIIMSSGKMVLLEQLLNRLKKEGHRVLIFSQMVRMLDILGDYL 691
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
+ G + +DG +R+ SI+ N P S+ + L ST+A GINL+ A V
Sbjct: 692 SIK-----GLQFQRLDGGVPSSQRRISIDHFNAPDSKDFVFLLSTRAGGLGINLMTADTV 746
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPS 576
++ D WNP + QA++RA+R+GQK V VY ++ +T+E + L R +K+ +
Sbjct: 747 IIFDSDWNPQADLQAMARAHRIGQKNHVSVYRFVSKDTIEEEILERARKKMILEYAIISL 806
Query: 577 SDGGGNDQTTASEP 590
Q + SEP
Sbjct: 807 GITDKTSQKSKSEP 820
>gi|324502629|gb|ADY41155.1| DNA excision repair protein ERCC-6, partial [Ascaris suum]
Length = 1156
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 146/548 (26%), Positives = 231/548 (42%), Gaps = 93/548 (16%)
Query: 62 VPRDVRKKMFPHQREGFEFI---WKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
VP K+F +Q+ G ++ + GGI DE+ G GKT
Sbjct: 257 VPNVCWNKLFKYQKTGVRWLSELHEQCVGGILADEM------------------GLGKTI 298
Query: 119 LTLVFLQAYMKLHPRCR--------PVI-IAPRSMLLTWEEEFKKWGIDIPFYNLNKPEL 169
+ FL+A R PV+ I P +++ W +EF W P
Sbjct: 299 QVICFLRALAFSQAETRGFGFRGLGPVLLICPTTLMHQWLKEFHNW---FPLCR------ 349
Query: 170 SGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGIL 229
+A++ + RG + K +++ L SY F K + +
Sbjct: 350 --------IAVLHSSGCFRGPQSHL-LSKFSTYRKDGCTLLTSYSTFTK-----KRKALA 395
Query: 230 LDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR-QE 288
+ DEGH RN M +A+ ++T R+IL+G+P QN+ +EL + + V
Sbjct: 396 NANWHYVILDEGHKIRNPGAQMTRAVKEVRTPHRLILTGSPLQNSLKELWSLMDFVYPGR 455
Query: 289 FGEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPFV--NVHK 342
G + K I++ +A+ + + +CA L++ I P++ + K
Sbjct: 456 LGALQTFTEKFAIPITQGGYANASAIQVRTAYKCAC--------VLRDAINPYILRRMKK 507
Query: 343 GTVLQESLPGLRHSVVILQ---------PDEFQKRLCKAV--EGVKSFVELNYCVSLLSV 391
+ LP V+ D R C + G+ +FV L + L
Sbjct: 508 DVEMTVQLPSKTEQVLFCNITPCQRTFYKDYISSRECARILAGGMDAFVGL-ITLRKLCN 566
Query: 392 HPSLL---PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYI 446
HP L+ P + E ++V + +G K L LL+L N+KVL+FSQ
Sbjct: 567 HPDLVTGGPNKHNE-YNVTLDEEMDFGAASRSG-KMIVLKALLKLWKDQNQKVLLFSQSR 624
Query: 447 EPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCE 506
+ LTL+ +F +EG E L MDG + RQ + N + + L +TK
Sbjct: 625 QMLTLL-----EKFVIKEGYEYLRMDGSTPIGSRQPLVEKFN-TNEDIFLFLLTTKVGGL 678
Query: 507 GINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
G+NL GA+RVV+ D WNP + QA RA+R+GQ+R V VY L+TS T+E +RQ K
Sbjct: 679 GVNLTGANRVVIFDPDWNPSTDVQARERAWRIGQERAVTVYRLLTSGTIEEKIYQRQIFK 738
Query: 567 VWWSNMVF 574
+ +N V
Sbjct: 739 QFLANRVL 746
>gi|357162876|ref|XP_003579552.1| PREDICTED: DNA excision repair protein ERCC-6-like [Brachypodium
distachyon]
Length = 999
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 139/553 (25%), Positives = 235/553 (42%), Gaps = 113/553 (20%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P + K ++PHQREG ++W + + TGG I+ G GKT
Sbjct: 281 LPGRIFKMLYPHQREGLRWLW-----------VLHCRGTGG----ILGDDMGLGKTMQVS 325
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
FL R +++AP+++L W +E G+ + + P ++
Sbjct: 326 AFLAGLFHSRLIRRVLVVAPKTLLTHWMKELSVVGLKEKIRDYSGPSVN----------- 374
Query: 182 DNRKRGRGKVGLIRYVKL-YSWKMGTGILGLSYRLFE---KLVSGD-------ELSGILL 230
IR +L Y++++G GIL +Y + KL+ GD E G L
Sbjct: 375 ------------IRNSELQYAFRVG-GILLTTYDIVRNNYKLMRGDFYNDADDEEEGRLW 421
Query: 231 DLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFG 290
D + DEGH +N T ++L +I RI++SGTP QNN +E+ E
Sbjct: 422 DY---VILDEGHIIKNPKTQRAQSLLQIPCVHRIVISGTPIQNNLKEMWALFFFCCPE-- 476
Query: 291 EVLRTVRKSGREISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPF--------V 338
+ E ++ + A +R+ KEL+E+I P+ V
Sbjct: 477 -----ILGDKDEFKTRYELPILRGNDKSATNREKHIGSNVAKELRERIKPYFLRRMKSEV 531
Query: 339 NVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV---EGVKSFVELNYCVSL-----LS 390
+ G+ + L ++ L+ Q++L +A E V S ++ + ++ +
Sbjct: 532 FLDTGSTDDKKLSKKNELIIWLKLTACQRQLYEAFLNSELVHSSMQGSPLAAITILKKIC 591
Query: 391 VHPSLLPQQ---------------------FFESFDVDSAKLAR----LKLDPEAGIKTR 425
HP +L ++ E + A +A L++D E K
Sbjct: 592 DHPLILTKRAAEGILEGMEGMDGLNNQEIGMVEKMAKNLADMAHDDDALQVDQEVSCKLS 651
Query: 426 FLLILLE--LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSS 483
F++ LL L VL+FSQ + L LI E + EG + L +DG + +R+
Sbjct: 652 FIMSLLRKLLEEGHHVLIFSQTRKMLNLIQEAI-----LLEGYKFLRIDGTTKISERERI 706
Query: 484 INVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRV 543
+ + A+I L +T+ G+ L A+RV+++D WNP + Q++ RAYR+GQ +
Sbjct: 707 VKDFQE-GPGAQIFLLTTQVGGLGLTLTKAARVIVVDPAWNPSTDNQSVDRAYRIGQTKD 765
Query: 544 VHVYHLITSETLE 556
V VY L+TS T+E
Sbjct: 766 VIVYRLMTSGTIE 778
>gi|163791108|ref|ZP_02185528.1| Snf2 family protein [Carnobacterium sp. AT7]
gi|159873664|gb|EDP67748.1| Snf2 family protein [Carnobacterium sp. AT7]
Length = 1075
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 135/546 (24%), Positives = 237/546 (43%), Gaps = 98/546 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
VP+ ++ ++ P+Q+ GF+++ + G G I++ G GKT +
Sbjct: 612 VPKSLKAELRPYQKTGFQWL---------------KMLSKYGFGGILADDMGLGKTIQVI 656
Query: 122 VFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
++ + ++ + P +I+AP S++ W E +K+ P + +G
Sbjct: 657 TYMLSEIEEKGQNDPFLIVAPASLIYNWHFEIEKFA----------PSIESIVVSGT--- 703
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
++ LI VK +L SY F + V + S + DE
Sbjct: 704 ------AEERMQLIENVK------PNQVLITSYPSFRQDVVHYKQSPF-----STLILDE 746
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK-S 299
+N +T +AL + ++R LSGTP +N +EL L+ F ++ +
Sbjct: 747 SQMVKNHNTKTSQALRDLTIKKRFALSGTPIENKIEELWAIFQLIMPGFFPSVKKFKTLP 806
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVH------KGTVLQESLPGL 353
+I+K ++ I + + LKEL +KI N++ + TV L +
Sbjct: 807 NEQIAKMIRPFVLRRIKK-------DVLKELPDKIE--TNLYSQMTKEQKTVYLAYLQRI 857
Query: 354 RHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLAR 413
+ SV + EF+K + + G+ ++ C P+ F + ++ DS KL +
Sbjct: 858 QESVNSMNGAEFKKNRIEILAGLTRLRQI--CCD---------PKLFIDDYEGDSGKLEQ 906
Query: 414 LKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDG 473
LK + ++L+FSQ+ L +I ++L ++ E Y+ G
Sbjct: 907 LKETVQTA-----------RENGRRILIFSQFTSMLAIIEKELA-----QQSVETFYLSG 950
Query: 474 KQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAIS 533
+ K+R +N N + + + L S KA G+NL GA V+L D+ WNP VE QA
Sbjct: 951 QTKPKERIEMVNRFN--AGEKEVFLISLKAGGTGLNLTGADMVILYDLWWNPAVEEQAAG 1008
Query: 534 RAYRLGQKRVVHVYHLITSETLE--WDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPL 591
RA+R+GQK+VV V LI T+E D+L +Q +K + ++ G+ Q S+
Sbjct: 1009 RAHRIGQKKVVQVLRLIAEGTIEEKIDQL-QQEKKALFDQIITED----GSIQREGSQLS 1063
Query: 592 EDKILE 597
ED I E
Sbjct: 1064 EDDIRE 1069
>gi|292630869|sp|B3LN76.1|RDH54_YEAS1 RecName: Full=DNA repair and recombination protein RDH54; AltName:
Full=RAD homolog 54; AltName: Full=Recombination factor
TID1; AltName: Full=Two hybrid interaction with DMC1
protein 1; Includes: RecName: Full=DNA topoisomerase;
Includes: RecName: Full=Putative helicase
gi|190408764|gb|EDV12029.1| helicase [Saccharomyces cerevisiae RM11-1a]
Length = 924
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 144/568 (25%), Positives = 246/568 (43%), Gaps = 75/568 (13%)
Query: 72 PHQREGFEFIWKNIAG-------GIDLDELKNS---TSTGGGNGCIISHAPGTGKTGLTL 121
PHQREG +F++ + G D+D S + +GC+++ G GKT +++
Sbjct: 264 PHQREGVKFMYDCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLMSI 323
Query: 122 VFL----------------QAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNL 164
+ Q+ + L C+ + ++ P +++ W+ EF KW NL
Sbjct: 324 TLIWTLIRQTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGNWKREFGKW------LNL 377
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
++ G + L K+ + ++K+ + +L + Y EKL+S E
Sbjct: 378 SRI--------GVLTLSSRNSPDMDKMAVRNFLKV---QRTYQVLIIGY---EKLLSVSE 423
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
L + V DEGH +N + + L + RR+++L+GTP QN+ E +
Sbjct: 424 ELEKNKHLIDMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDF 483
Query: 285 VRQE-FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
+ G R+ I++A+ + + + +E+ KE+ E F+
Sbjct: 484 INPGILGSFASFKRRFIIPITRARDTA--NRYNEELLEKGEERSKEMIEITKRFILRRTN 541
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAV-EGVK-SFVELNYCVSL--------LSVHP 393
+L++ LP ++ +P Q K + +G + F L + SL + P
Sbjct: 542 AILEKYLPPKTDIILFCKPYSQQILAFKDILQGARLDFGRLTFSSSLGLITLLKKVCNSP 601
Query: 394 SLLPQQ-FFESFDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPL 449
L+ +++S D+ +G K R L+ LLE T EKV+V S Y + L
Sbjct: 602 GLVGSDPYYKSHIKDTQSQDSYSRSLNSG-KLRVLMTLLEGIRKGTKEKVVVVSNYTQTL 660
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509
+I E L + G +DG K+R S + N + +L S K+ G+N
Sbjct: 661 DII-ENLMNM----AGMSHCRLDGSIPAKQRDSIVTSFNRNPAIFGFLL-SAKSGGVGLN 714
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
LVGASR++L D WNP V+ QA+SR +R GQK+ +Y L+T+ ++ L+RQ K
Sbjct: 715 LVGASRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSL 774
Query: 570 SNMVFPSSD----GGGNDQTTASEPLED 593
S S+ ND E L+D
Sbjct: 775 SQKFLGDSEMRNKESSNDDLFNKEDLKD 802
>gi|410905767|ref|XP_003966363.1| PREDICTED: chromodomain-helicase-DNA-binding protein 4-like [Takifugu
rubripes]
Length = 1967
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 137/520 (26%), Positives = 222/520 (42%), Gaps = 97/520 (18%)
Query: 70 MFPHQREGFE---FIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA 126
+ P+Q EG F W I DE+ G GKT T VFL +
Sbjct: 746 LHPYQLEGLNWLRFSWAQATDTILADEM------------------GLGKTVQTAVFLYS 787
Query: 127 -YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV------A 179
Y + H + ++ AP S ++ WE EF+ W D+ G +++ AV +
Sbjct: 788 LYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY-----VGDKDSRAVIRENEFS 842
Query: 180 LMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLF 236
N RG K ++ VK + +L SY L + L I
Sbjct: 843 FEGNAIRGGKKASKMKKDSTVKFH-------VLLTSYELI--TIDQAVLGSIEW---ACL 890
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTV 296
V DE H +N+ + F+ L+ + + +++L+GTP QNN +EL + L+ + E L
Sbjct: 891 VVDEAHRLKNNQSKFFRVLNNYQLQHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGF 950
Query: 297 RKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHS 356
+ +I+K ++++K+L + + P + + + +P
Sbjct: 951 LEEFADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKHMPSKTEL 992
Query: 357 VVILQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFE 402
+V ++ QK+ K + ++F LN VSLL+V HP L P E
Sbjct: 993 IVRVELSPMQKKYYKFI-LTRNFEALNTRGGGNQVSLLNVVMDLKKCCNHPYLFPAAATE 1051
Query: 403 SFDVDSAKLARLKLDPEAGIKTRFLLILLEL------STNEKVLVFSQYIEPLTLIMEQL 456
+ AKL + + +K+ L+LL+ +VLVFSQ + L L+ + L
Sbjct: 1052 A-----AKLPNGMYEGNSLVKSSGKLMLLQKMMRKLKEGGHRVLVFSQMTKMLDLLEDFL 1106
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
+ EG + +DG RQ +I+ N P + L ST+A GINL A V
Sbjct: 1107 EN-----EGYKYERIDGGVTGNMRQEAIDRFNAPGAPQFAFLLSTRAGGLGINLASADTV 1161
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
++ D WNP + QA SRA+R+GQ R V +Y +T ++E
Sbjct: 1162 IIYDSDWNPHNDIQAFSRAHRIGQNRKVMIYRFVTKASVE 1201
>gi|349576451|dbj|GAA21622.1| K7_Rdh54p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392300911|gb|EIW12000.1| Rdh54p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 924
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 144/569 (25%), Positives = 248/569 (43%), Gaps = 77/569 (13%)
Query: 72 PHQREGFEFIWKNIAG-------GIDLDELKNS---TSTGGGNGCIISHAPGTGKTGLTL 121
PHQREG +F++ + G D+D S + +GC+++ G GKT +++
Sbjct: 264 PHQREGVKFMYDCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLMSI 323
Query: 122 VFL----------------QAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNL 164
+ Q+ + L C+ + ++ P +++ W+ EF KW NL
Sbjct: 324 TLIWTLIRQTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGNWKREFGKW------LNL 377
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
++ G + L K+ + ++K+ + +L + Y EKL+S E
Sbjct: 378 SRI--------GVLTLSSRNSPDMDKMAVRNFLKV---QRTYQVLIIGY---EKLLSVSE 423
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
L + V DEGH +N + + L + RR+++L+GTP QN+ E +
Sbjct: 424 ELEKNKHLIDMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDF 483
Query: 285 VRQE-FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
+ G R+ I++A+ + + + +E+ KE+ E F+
Sbjct: 484 INPGILGSFASFKRRFIIPITRARDTA--NRYNEELLEKGEERSKEMIEITKRFILRRTN 541
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAV-EGVK-SFVELNYCVSL--------LSVHP 393
+L++ LP ++ +P Q K + +G + F +L + SL + P
Sbjct: 542 AILEKYLPPKTDIILFCKPYSQQILAFKDILQGARLDFGQLTFSSSLGLITLLKKVCNSP 601
Query: 394 SLLPQQ-FFESFDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPL 449
L+ +++S D+ +G K + L+ LLE T EKV+V S Y + L
Sbjct: 602 GLVGSDPYYKSHIKDTQSQDSYSRSLNSG-KLKVLMTLLEGIRKGTKEKVVVVSNYTQTL 660
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGI 508
+I E L + G +DG K+R S + N +P+ L S K+ G+
Sbjct: 661 DII-ENLMNM----AGMSHCRLDGSIPAKQRDSIVTSFNRNPAIFG--FLLSAKSGGVGL 713
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NLVGASR++L D WNP V+ QA+SR +R GQK+ +Y L+T+ ++ L+RQ K
Sbjct: 714 NLVGASRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNS 773
Query: 569 WSNMVFPSSD----GGGNDQTTASEPLED 593
S S+ ND E L+D
Sbjct: 774 LSQKFLGDSEMRNKESSNDDLFNKEDLKD 802
>gi|123506672|ref|XP_001329249.1| Type III restriction enzyme, res subunit family protein
[Trichomonas vaginalis G3]
gi|121912202|gb|EAY17026.1| Type III restriction enzyme, res subunit family protein
[Trichomonas vaginalis G3]
Length = 871
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 150/544 (27%), Positives = 234/544 (43%), Gaps = 82/544 (15%)
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMK--LHPRCRPVIIAPRSMLLTWEEEFKKW--GIDIP 160
+++ G GKT L ++ AY+K H +++ P ++++TW EF+K+
Sbjct: 343 NALLADEVGLGKT-LQIISFFAYLKEARHINGPHLVVVPNAVMVTWRTEFEKYLPSAKFV 401
Query: 161 FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV 220
FY+ +K + N VA D IL +Y +
Sbjct: 402 FYH-SKAKSRHNFFNEVVARTD-----------------------FDILLTTYSIL--FQ 435
Query: 221 SGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKAL-SRIKTRRRIILSGTPFQNNFQELE 279
D+L I VFDEGH +N +FKA+ I + RII++ TP+QN +EL
Sbjct: 436 DQDKLGQITWRTA---VFDEGHKLKNPKAQIFKAVEDTIFSDFRIIVTATPYQNKLEELW 492
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVN 339
LSL+R + L + I K + ANH + + L E I PF
Sbjct: 493 AILSLIRPSYFGNLDKFKLFFSRIEK--------KVVDPANH--ELVVHRLHEVIRPFTL 542
Query: 340 VHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN---YCVSLLSVHPSLL 396
+ +PG + + P E Q + +G K ++ N Y LS P L
Sbjct: 543 RRSQDEVAVEIPGKYEVTLKVSPSELQNSIM--AKGKKEGLDNNKQMYITKRLSNSPILF 600
Query: 397 -PQQFFESFDVDSAKLARLKLDPEAGI----KTRFLLILLE--LSTNEKVLVFSQYIEPL 449
P+ FE K+DPE K + L ++L+ ++T + L++SQ+
Sbjct: 601 FPRDVFE------------KIDPEYLFSRTPKLQLLDVILQKLITTGHRFLIYSQW---- 644
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509
T +M+ L NWR+ E +DG +R I P S + ML ST++ G+N
Sbjct: 645 TSMMDLLEIYLNWRKI-ETSRIDGSVTTSERSRLIKSFVVPGSPVKGMLLSTRSSAFGLN 703
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
L A V+L D +NPF+E QA +R +R+GQ V + L+T++T E LR RK
Sbjct: 704 LQAADTVILFDSDYNPFIELQASARVHRMGQTNSVVIVRLMTNDTGEEHILRIARRKFKM 763
Query: 570 SNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYN--NPSETLINAIIPQPKETELIETF 627
+ + G N P E+KI E + NP+E +N I+ + K+ E I F
Sbjct: 764 GQQIITA--GMFN----LGLPEENKINVEGEKTVEIVNPTEQQLNEILARGKQEEGILAF 817
Query: 628 GEFL 631
+L
Sbjct: 818 QPYL 821
>gi|302892777|ref|XP_003045270.1| transcription-coupled repair protein CSB/RAD26 [Nectria
haematococca mpVI 77-13-4]
gi|256726195|gb|EEU39557.1| transcription-coupled repair protein CSB/RAD26 [Nectria
haematococca mpVI 77-13-4]
Length = 1164
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 148/557 (26%), Positives = 241/557 (43%), Gaps = 109/557 (19%)
Query: 62 VPRDVRKKMFPHQREGFEFI---WKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
+P D+ +F +Q+ G +++ +K GGI DE+ G GKT
Sbjct: 390 LPGDIHPSLFGYQKTGVQWLAELYKQHVGGIVGDEM------------------GLGKTV 431
Query: 119 LTLVFLQAYMKLHPRCRPVII-APRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGA 177
+ FL A RPVI+ AP ++L W EF +W P + SG
Sbjct: 432 QLIAFLAALHYSKKLTRPVIVVAPATLLRQWVSEFHRW---WPPLRVAILHASGS----- 483
Query: 178 VALMDNRKRGRGKVGLIRYVKLYSWKMG----TGILGLSYRLFEKLVSGDELSGILLDLP 233
+MD + + + + S K G++ + L + LL +
Sbjct: 484 -GMMDPKVEDEADLDHFKPLATKSEKAARRIVNGVVKNGHVLVTTYAGLQTYADTLLPVH 542
Query: 234 GLF-VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR-QEFGE 291
+ V DEGH RN + + + T R+ILSGTP QNN EL + + G
Sbjct: 543 WDYAVLDEGHKIRNPNAEITVTCKELNTPNRVILSGTPVQNNLTELWSLFDFIYPMRLGT 602
Query: 292 VL--RT-----VRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGT 344
++ RT +R+ G + A + ++++ +CA + LKE I+ ++
Sbjct: 603 LVNFRTQFEIPIRQGG--YANASNLQVMTA-EKCA--------EALKETISEYL------ 645
Query: 345 VLQESLPGLRHSVVILQPDEFQKRL-CKAVEGVK----SFVELNYCVSLLSV-------- 391
L L+ V P++ ++ L CK +G + +F++ + S+LS
Sbjct: 646 -----LQRLKVDVAADLPEKTEQVLFCKLTDGQRKAYETFLKSDEVSSILSRTRQSLYGI 700
Query: 392 --------HPSLLPQQFFE--SFDVDSAKL-ARLKLDPEAGIKTRFLLILLELSTNEKVL 440
HP LL + +D + KL A+L+L T+ LL + + K L
Sbjct: 701 DILRKICNHPDLLDKSLGSKPGYDFGNPKLSAKLQL-------TKDLLQKVMIPNGHKTL 753
Query: 441 VFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLN-DPSSQARIM 497
+FSQ + L +I + +R ++ Y MDG+ V +RQ I+ N DP+ +
Sbjct: 754 LFSQGKQMLNIIEKCIRE-------CDISYVRMDGETPVDQRQPMIDKFNEDPN--IHVF 804
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L +T+ G NL GA R+++ D WNP + QA RA+RLGQK+ V +Y L+T T+E
Sbjct: 805 LMTTRTGGLGTNLTGADRIIIFDPDWNPSTDLQARERAWRLGQKKPVKIYRLMTEGTIEE 864
Query: 558 DKLRRQARKVWWSNMVF 574
RQ K + +N V
Sbjct: 865 KIYHRQIFKQFMTNKVL 881
>gi|290878090|emb|CBK39149.1| Rdh54p [Saccharomyces cerevisiae EC1118]
Length = 924
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 144/569 (25%), Positives = 248/569 (43%), Gaps = 77/569 (13%)
Query: 72 PHQREGFEFIWKNIAG-------GIDLDELKNS---TSTGGGNGCIISHAPGTGKTGLTL 121
PHQREG +F++ + G D+D S + +GC+++ G GKT +++
Sbjct: 264 PHQREGVKFMYDCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLMSI 323
Query: 122 VFL----------------QAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNL 164
+ Q+ + L C+ + ++ P +++ W+ EF KW NL
Sbjct: 324 TLIWTLIRQTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGNWKREFGKW------LNL 377
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
++ G + L K+ + ++K+ + +L + Y EKL+S E
Sbjct: 378 SRI--------GVLTLSSRNSPDMDKMAVRNFLKV---QRTYQVLIIGY---EKLLSVSE 423
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
L + V DEGH +N + + L + RR+++L+GTP QN+ E +
Sbjct: 424 ELEKNKHLIDMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDF 483
Query: 285 VRQE-FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
+ G R+ I++A+ + + + +E+ KE+ E F+
Sbjct: 484 INPGILGSFASFKRRFIIPITRARDTA--NRYNEELLEKGEERSKEMIEITKRFILRRTN 541
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAV-EGVK-SFVELNYCVSL--------LSVHP 393
+L++ LP ++ +P Q K + +G + F +L + SL + P
Sbjct: 542 AILEKYLPPKTDIILFCKPYSQQILAFKDILQGARLDFGQLTFSSSLGLITLLKKVCNSP 601
Query: 394 SLLPQQ-FFESFDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPL 449
L+ +++S D+ +G K + L+ LLE T EKV+V S Y + L
Sbjct: 602 GLVGSDPYYKSHIKDTQSQDSYSRSLNSG-KLKVLMTLLEGIRKGTKEKVVVVSNYTQTL 660
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGI 508
+I E L + G +DG K+R S + N +P+ L S K+ G+
Sbjct: 661 DII-ENLMNM----AGMSHCRLDGSIPAKQRDSIVTSFNRNPAIFG--FLLSAKSGGVGL 713
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NLVGASR++L D WNP V+ QA+SR +R GQK+ +Y L+T+ ++ L+RQ K
Sbjct: 714 NLVGASRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNS 773
Query: 569 WSNMVFPSSD----GGGNDQTTASEPLED 593
S S+ ND E L+D
Sbjct: 774 LSQKFLGDSEMRNKESSNDDLFNKEDLKD 802
>gi|195354288|ref|XP_002043630.1| GM15785 [Drosophila sechellia]
gi|194127798|gb|EDW49841.1| GM15785 [Drosophila sechellia]
Length = 1921
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 127/488 (26%), Positives = 218/488 (44%), Gaps = 54/488 (11%)
Query: 119 LTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV 178
+TL++ Y + H R ++ P S L+ WE EF+ W D FY + G +++ AV
Sbjct: 705 VTLLY-SLYKEGHCRGPFLVAVPLSTLVNWEREFELWAPD--FYCIT---YIGDKDSRAV 758
Query: 179 ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVF 238
+ G + + +L + + +L SY +L+S D +D + V
Sbjct: 759 IRENELSFEEGAIRGSKVSRLRTTQYKFNVLLTSY----ELISMDAACLGSIDW-AVLVV 813
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK 298
DE H +++ + F+ L+ +++L+GTP QNN +EL + L+
Sbjct: 814 DEAHRLKSNQSKFFRILNSYTIAYKLLLTGTPLQNNLEELFHLLNF-------------- 859
Query: 299 SGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
+S+ K L + G A+ +E++K L E + P + T + +++P +V
Sbjct: 860 ----LSRDKFNDLQAFQGEFADVSKEEQVKRLHEMLGPHMLRRLKTDVLKNMPSKSEFIV 915
Query: 359 ILQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESF 404
++ QK+ K + K++ LN SL+++ HP L P E+
Sbjct: 916 RVELSAMQKKFYKFI-LTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSAAEEAT 974
Query: 405 DVDSAKLARLKLDPEAGIKTRFLLILLEL-STNEKVLVFSQYIEPLTLIMEQLRHRFNWR 463
L AG +L +L + N +VL+FSQ + L ++ + L
Sbjct: 975 TAAGGLYEINSLTKAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFL------- 1027
Query: 464 EGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDV 521
EG++ Y +DG RQ +I+ N P +Q + L ST+A GINL A V++ D
Sbjct: 1028 EGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDS 1087
Query: 522 VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGG 581
WNP + QA SRA+R+GQ V +Y +T ++E + RK+ +++V GG
Sbjct: 1088 DWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGK 1147
Query: 582 NDQTTASE 589
T E
Sbjct: 1148 GANFTKQE 1155
>gi|392340124|ref|XP_001063352.3| PREDICTED: chromodomain-helicase-DNA-binding protein 4 [Rattus
norvegicus]
Length = 1921
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 136/526 (25%), Positives = 228/526 (43%), Gaps = 90/526 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 719 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 763
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 764 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 821
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 822 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 867
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 868 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPESRVNLEGFLEEF 927
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 928 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 969
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 970 ELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA--- 1025
Query: 407 DSAKLARLKLDPEAGIKTR------FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 1026 --PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-- 1081
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1082 ---EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYD 1138
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1139 SDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1183
>gi|292630874|sp|C7GQI8.1|RDH54_YEAS2 RecName: Full=DNA repair and recombination protein RDH54; AltName:
Full=RAD homolog 54; AltName: Full=Recombination factor
TID1; AltName: Full=Two hybrid interaction with DMC1
protein 1; Includes: RecName: Full=DNA topoisomerase;
Includes: RecName: Full=Putative helicase
gi|256271911|gb|EEU06936.1| Rdh54p [Saccharomyces cerevisiae JAY291]
Length = 924
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 146/576 (25%), Positives = 250/576 (43%), Gaps = 91/576 (15%)
Query: 72 PHQREGFEFIWKNIAG-------GIDLDELKNS---TSTGGGNGCIISHAPGTGKTGLTL 121
PHQREG +F++ + G D+D S + +GC+++ G GKT +++
Sbjct: 264 PHQREGVKFMYDCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLMSI 323
Query: 122 VFL----------------QAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNL 164
+ Q+ + L C+ + ++ P +++ W+ EF KW NL
Sbjct: 324 TLIWTLIRQTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGNWKREFGKW------LNL 377
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
++ G + L K+ + ++K+ + +L + Y EKL+S E
Sbjct: 378 SRI--------GVLTLSSRNSPDMDKMAVRNFLKV---QRTYQVLIIGY---EKLLSVSE 423
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
L + V DEGH +N + + L + RR+++L+GTP QN+ E +
Sbjct: 424 ELEKNKHLIDMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDF 483
Query: 285 VRQE-FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHK- 342
+ G R+ I++A+ AN ++E LK+ +E+ + + K
Sbjct: 484 INPGILGSFASFKRRFIIPITRARDT---------ANRYNEELLKKGEERSKEMIEITKR 534
Query: 343 ------GTVLQESLPGLRHSVVILQPDEFQKRLCKAV-EGVK-SFVELNYCVSL------ 388
+L++ LP ++ +P Q K + +G + F +L + SL
Sbjct: 535 FILRRTNAILEKYLPPKTDIILFCKPYSQQILAFKDILQGARLDFGQLTFSSSLGLITLL 594
Query: 389 --LSVHPSLLPQQ-FFESFDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVF 442
+ P L+ +++S D+ +G K + L+ LLE T EKV+V
Sbjct: 595 KKVCNSPGLVGSDPYYKSHIKDTQSQDSYSRSLNSG-KLKVLMTLLEGIRKGTKEKVVVV 653
Query: 443 SQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLAST 501
S Y + L +I E L + G +DG K+R S + N +P+ L S
Sbjct: 654 SNYTQTLDII-ENLMNM----AGMSHCRLDGSIPAKQRDSIVTSFNRNPAIFG--FLLSA 706
Query: 502 KACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561
K+ G+NLVGASR++L D WNP V+ QA+SR +R GQK+ +Y L+T+ ++ L+
Sbjct: 707 KSGGVGLNLVGASRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQ 766
Query: 562 RQARKVWWSNMVFPSSD----GGGNDQTTASEPLED 593
RQ K S S+ ND E L+D
Sbjct: 767 RQLMKNSLSQKFLGDSEMRNKESSNDDLFNKEDLKD 802
>gi|444722915|gb|ELW63587.1| Chromodomain-helicase-DNA-binding protein 3 [Tupaia chinensis]
Length = 2077
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 131/483 (27%), Positives = 216/483 (44%), Gaps = 76/483 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 542 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 599
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 600 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 649
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 650 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 704
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 705 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 746
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 747 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 805
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 806 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 860
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 861 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 915
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 916 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 975
Query: 553 ETL 555
++
Sbjct: 976 ASV 978
>gi|290889290|gb|ADD69942.1| chromo-helicase DNA-binding protein [Zonotrichia albicollis]
Length = 1785
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 138/527 (26%), Positives = 224/527 (42%), Gaps = 88/527 (16%)
Query: 87 GGIDLDELKNSTSTG---------GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP- 136
GG D EL++ G GN CI++ G GKT T+ FL H P
Sbjct: 457 GGHDSLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPF 516
Query: 137 VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRY 196
+++ P S L +W+ E + W P++ N V L D R + +
Sbjct: 517 LLVVPLSTLTSWQREIQTWA----------PQM-----NAVVYLGD--ITSRNMIRTHEW 559
Query: 197 VKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFV-FDEGHTPRNDDTCMFKAL 255
+ + ++ IL +Y + K S L L +F+ DE H +NDD+ ++K L
Sbjct: 560 MHPQTKRLKFNILLTTYEILLKDKS------FLGGLNWVFIGVDEAHRLKNDDSLLYKTL 613
Query: 256 SRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLI 312
K+ R++++GTP QN+ +EL + L + E F E GRE A
Sbjct: 614 IDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREFGYA------ 667
Query: 313 SSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ- 366
L +++ PF+ +++SLP LR + LQ ++
Sbjct: 668 ----------------SLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKW 711
Query: 367 ------KRLCKAVEGVKS-----FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLK 415
K L K +G S +EL C + H L+ F L L
Sbjct: 712 ILTRNYKALSKGSKGSTSGFLNIMMELKKCCN----HCYLIKPPDDNEFYNKQEALQHL- 766
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGK 474
+ + L++ +VL+FSQ + L ++ E L++R F ++ +DG
Sbjct: 767 IRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGS 820
Query: 475 QDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISR 534
+ R+ +++ N S+ L ST+A GINL A VV+ D WNP + QA +R
Sbjct: 821 IKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQAR 880
Query: 535 AYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGG 581
A+R+GQK+ V++Y L+T ++E D L R +K+ ++V D G
Sbjct: 881 AHRIGQKKQVNIYRLVTKASVEEDILERAKKKMVLDHLVIQRMDTTG 927
>gi|164448642|ref|NP_001106734.1| chromodomain-helicase-DNA-binding protein 1 [Bombyx mori]
gi|269969346|sp|A9X4T1.1|CHD1_BOMMO RecName: Full=Chromodomain-helicase-DNA-binding protein 1;
Short=CHD-1; AltName: Full=ATP-dependent helicase CHD1
gi|89213694|gb|ABD64154.1| CHD1 [Bombyx mori]
Length = 1365
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 128/502 (25%), Positives = 217/502 (43%), Gaps = 79/502 (15%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVI-IAPRSMLLTWEEEFKKWGIDIPFY 162
N I++ G GKT T+ FL K P + + P S + W+ EF++W DI
Sbjct: 224 NSVILADEMGLGKTIQTICFLYYLFKSQHLYGPFLCVVPLSTMTAWQREFQQWAPDI--- 280
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL-FEKLVS 221
V + G V ++ + W + S RL F +++
Sbjct: 281 -------------NVVTYI-------GDVSSRDIIRQFEWSFSS-----SKRLKFNAILT 315
Query: 222 GDELSGILLDLPGLFVF-------DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNN 274
E+ +L D L F DE H +NDD+ ++KAL T R++++GTP QN+
Sbjct: 316 TYEI--LLKDRQFLRSFSWACLLVDEAHRLKNDDSLLYKALKEFDTNHRLLVTGTPLQNS 373
Query: 275 FQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKI 334
+EL L + E K + + + ++L +++
Sbjct: 374 LKELWALLHFIMPYKFESWEDFEKDHEDAATKGY-------------------EKLHKQL 414
Query: 335 APFVNVHKGTVLQESLPGLRHSVVILQPDEFQKR------------LCKAVEG-VKSFVE 381
PF+ + +++SLP ++ ++ QK+ L K V+G + +F+
Sbjct: 415 EPFILRRQKKDVEKSLPAKVEQILRVEMTSIQKQYYKWILTKNYSALRKGVKGSINTFIN 474
Query: 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL-STNEKVL 440
+ + H L + FES + A KL +G +L L T +VL
Sbjct: 475 IVIELKKCCNHALLTKPEDFESRASLATSDAVEKLLRGSGKLLLLDKLLCRLKETGHRVL 534
Query: 441 VFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
+FSQ + L ++ E L+ R F ++ +DG + R+ +++ N SQ L
Sbjct: 535 IFSQMVRMLDILAEYLQRRHFPFQR------LDGSIKGELRKQALDHFNAEGSQDFCFLL 588
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
ST+A GINL A V++ D WNP + QA +RA+R+GQK V++Y L+T+ ++E D
Sbjct: 589 STRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEDI 648
Query: 560 LRRQARKVWWSNMVFPSSDGGG 581
+ R RK+ ++V D G
Sbjct: 649 VERAKRKMVLDHLVIQRMDTTG 670
>gi|430834044|ref|ZP_19452054.1| Snf2 family protein [Enterococcus faecium E0679]
gi|430485944|gb|ELA62825.1| Snf2 family protein [Enterococcus faecium E0679]
Length = 1064
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 127/515 (24%), Positives = 222/515 (43%), Gaps = 92/515 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ + M +Q++GF W + G G I++ G GKT T+
Sbjct: 604 LPKGLNATMRDYQKQGFR--WLKMLGHYQF-------------GGILADEMGLGKTLQTI 648
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
FL + + +I+AP S++ W+ E +K+ P LS + ++
Sbjct: 649 AFLLSEKEERKSFSALIVAPASLIYNWQAEVRKFA----------PSLS-------IQVI 691
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
+ K+ R ++ T I SY + ++ + I + DE
Sbjct: 692 NGNKKEREEL----------LAKDTDIRVTSYASLRQDLANYQSQKI-----DYLILDEA 736
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301
+N T +AL + +R LSGTP +NN +EL + + + F +K R
Sbjct: 737 QMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLFATIMPGFF----PTKKKFR 792
Query: 302 EISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAPFVNVHKGTVLQESLPGLRH 355
E++ + A +I R R D++ LK+L EK + + + TV L +R
Sbjct: 793 ELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYSALTEEQKTVYLAYLRQMRE 848
Query: 356 SVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLK 415
+ + + F+K + G+ ++ C P+ F E + S KL ++K
Sbjct: 849 EITSMDSEAFKKNRIGILAGLTRLRQI--CCD---------PRLFIEDYQGGSGKLEQVK 897
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
L++ +VL+FSQ+ LT++ E+L G Y+ G
Sbjct: 898 D-----------LLVAAKENKRRVLLFSQFTGMLTILQEELAEL-----GISTFYLRGST 941
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
+ R S ++ N + + + L S KA G+NL GA V+L D+ WNP +E QA RA
Sbjct: 942 KPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTVILYDLWWNPAIEEQAAGRA 999
Query: 536 YRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 1000 HRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1034
>gi|5917756|gb|AAD56024.1|AF181827_1 chromodomain helicase DNA binding protein 1 [Nymphicus hollandicus]
Length = 918
Score = 127 bits (318), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 132/508 (25%), Positives = 216/508 (42%), Gaps = 91/508 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ F+ H P +++ P S L +W+ E + W
Sbjct: 121 GNSCILADEMGLGKTIQTISFMNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWA----- 175
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
P++ N V L D R ++ + W ++ IL +Y +
Sbjct: 176 -----PQM-----NAVVYLGDITSRN--------MIRTHEWMHPQTKRLKFNILLTTYEI 217
Query: 216 FEKLVSGDELSGILLDLPGLFV-FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNN 274
K S L L +F+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 218 LLKDKS------FLGGLNWVFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNS 271
Query: 275 FQELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELK 331
+EL + L + E F E GRE A L
Sbjct: 272 LRELWSLLHFIMPEKFSSWEDFEEEHGKGREFGYAS----------------------LH 309
Query: 332 EKIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS- 378
+++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 310 KELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSG 369
Query: 379 ----FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS 434
+EL C + H L+ F L L + + L++
Sbjct: 370 FLNIMMELKKCCN----HCYLIKPPDDNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRE 424
Query: 435 TNEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQ 493
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 425 RGNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSE 478
Query: 494 ARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T
Sbjct: 479 DFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKG 538
Query: 554 TLEWDKLRRQARKVWWSNMVFPSSDGGG 581
++E D L R +K+ ++V D G
Sbjct: 539 SVEEDILERAKKKMVLDHLVIQRMDTTG 566
>gi|324499809|gb|ADY39928.1| Chromodomain-helicase-DNA-binding protein 3 [Ascaris suum]
Length = 1844
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 127/484 (26%), Positives = 217/484 (44%), Gaps = 76/484 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT ++ FL + +K H R ++ AP S L+ WE E + W D F
Sbjct: 640 GTDAILADEMGLGKTIQSMAFLYSLVKEGHTRGPFLVAAPLSTLINWEREAEFWCPD--F 697
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL 215
Y + G +++ V + ++ RG KV ++ + + +L SY L
Sbjct: 698 YVVT---YVGDKDSRTVIREHEFSFIEGAVRGGPKVTRMKTDQGIKFH----VLLTSYEL 750
Query: 216 F---EKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
+ ++S E +G+ V DE H +N+ + F+ L K R++L+GTP Q
Sbjct: 751 INIDKTILSSIEWAGL--------VVDEAHRLKNNQSLFFRTLRDFKIGYRLLLTGTPLQ 802
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + + L + EISK ++++++L
Sbjct: 803 NNLEELFHLLNFLSPDRFYDLESFTHEFAEISK------------------EDQIQKLHS 844
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN-----YCVS 387
+ P + + +P +V ++ QK+ K + ++F LN VS
Sbjct: 845 LLGPHMLRRLKADVLSGMPSKSELIVRVELSPMQKKYYKNIL-TRNFEALNPKGGGTQVS 903
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P+ +++ K + A IK ILL+
Sbjct: 904 LLNIIMDLKKCCNHPYLFPKA-----SIEAPKHKNGMYEGTALIKASGKFILLQKMLRKL 958
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L ++ + F EG + +DG + RQ +I+ N P++
Sbjct: 959 KEQGHRVLIFSQMTKMLDVLED-----FCENEGYKYERIDGSITGQARQDAIDRFNAPNA 1013
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q + L ST+A GINL A V++ D WNP + QA SRA+R+GQ+ V +Y +T
Sbjct: 1014 QQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQQNKVLIYRFVTR 1073
Query: 553 ETLE 556
++E
Sbjct: 1074 NSVE 1077
>gi|358417347|ref|XP_003583617.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein 3 [Bos taurus]
Length = 2012
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 134/501 (26%), Positives = 223/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 765 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 822
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 823 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 872
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 873 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 927
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 928 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 969
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 970 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1028
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK L+LL+
Sbjct: 1029 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKASGKLMLLQKMLRKL 1083
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N +
Sbjct: 1084 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAHGA 1138
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1139 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1198
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1199 ASVEERITQVAKRKMMLTHLV 1219
>gi|432909970|ref|XP_004078255.1| PREDICTED: chromodomain-helicase-DNA-binding protein 4-like [Oryzias
latipes]
Length = 1882
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 138/521 (26%), Positives = 224/521 (42%), Gaps = 99/521 (19%)
Query: 70 MFPHQREGFE---FIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA 126
+ P+Q EG F W I DE+ G GKT T VFL +
Sbjct: 663 LHPYQLEGLNWLRFSWAQATDTILADEM------------------GLGKTVQTAVFLYS 704
Query: 127 -YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV------A 179
Y + H + ++ AP S ++ WE EF+ W D+ G +++ AV +
Sbjct: 705 LYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY-----VGDKDSRAVIRENEFS 759
Query: 180 LMDNRKRGRGKVGLIRY---VKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GL 235
N RG K ++ VK + +L SY +L++ D+ +L +
Sbjct: 760 FEGNAIRGGKKASKMKKDSPVKFH-------VLLTSY----ELITIDQ--AVLGSIEWAC 806
Query: 236 FVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRT 295
V DE H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L
Sbjct: 807 LVVDEAHRLKNNQSKFFRLLNNYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEG 866
Query: 296 VRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRH 355
+ +I+K ++++K+L + + P + + + +P
Sbjct: 867 FLEEFADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKHMPSKTE 908
Query: 356 SVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFF 401
+V ++ QK+ K + ++F LN VSLL+V HP L P
Sbjct: 909 LIVRVELSPMQKKYYKFIL-TRNFEALNTRGGGNQVSLLNVVMDLKKCCNHPYLFPAAAT 967
Query: 402 ESFDVDSAKLARLKLDPEAGIKTRFLLILLEL------STNEKVLVFSQYIEPLTLIMEQ 455
E+ KL + A K L+LL+ +VLVFSQ + L L+ +
Sbjct: 968 EA-----PKLPNGMYEGAALTKASGKLMLLQKMMKKLKEGGHRVLVFSQMTKMLDLLEDF 1022
Query: 456 LRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515
L + EG + +DG RQ +I+ N P +Q L ST+A GINL A
Sbjct: 1023 LEN-----EGYKYERIDGGVTGNMRQEAIDRFNAPGAQQFAFLLSTRAGGLGINLASADT 1077
Query: 516 VVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
V++ D WNP + QA SRA+R+GQ R V +Y +T ++E
Sbjct: 1078 VIIYDSDWNPHNDIQAFSRAHRIGQNRKVMIYRFVTKASVE 1118
>gi|40215423|gb|AAR82736.1| SD21488p [Drosophila melanogaster]
Length = 1645
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 123/502 (24%), Positives = 215/502 (42%), Gaps = 80/502 (15%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVI-IAPRSMLLTWEEEFKKWGIDIPFY 162
N I++ G GKT T+ FL + K+H P + + P S + W+ EF W D+
Sbjct: 547 NSVILADEMGLGKTIQTICFLYSLFKIHHLYGPFLCVVPLSTMTAWQREFDLWAPDM--- 603
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGI---LGLSYRLFEKL 219
N L D + R ++ Y W+ + +E +
Sbjct: 604 ------------NVVTYLGDIKSR--------ELIQQYEWQFESSKRLKFNCILTTYEIV 643
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ + G L L V DE H +NDD+ ++K+L T R++++GTP QN+ +EL
Sbjct: 644 LKDKQFLGTL-QWAALLV-DEAHRLKNDDSLLYKSLKEFDTNHRLLITGTPLQNSLKELW 701
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVN 339
L + + + + +H + +D+ L +++ P++
Sbjct: 702 ALLHFIMPDKFDTWENF--------EVQHGNA-----------EDKGYTRLHQQLEPYIL 742
Query: 340 VHKGTVLQESLPG-----LRHSVVILQPDEFQKRLCKAVEGVKS------------FVEL 382
+++SLP LR + LQ ++ L K + ++ +EL
Sbjct: 743 RRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNFDALRKGKRGSTSTFLNIVIEL 802
Query: 383 NYCVSLLSVHPSLLPQQFFE--SFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVL 440
C + H +L+ FE D A LK + + + L L E T +VL
Sbjct: 803 KKCCN----HAALIRPSEFELMGLQQDEALQTLLKGSGKLVLLDKLLCRLKE--TGHRVL 856
Query: 441 VFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
+FSQ + L ++ + L+ R F ++ +DG + R+ +++ N SQ L
Sbjct: 857 IFSQMVRMLDVLADYLQKRHFPFQR------LDGSIKGEMRRQALDHFNAEGSQDFCFLL 910
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
ST+A GINL A V++ D WNP + QA +RA+R+GQK V++Y L+T+ ++E
Sbjct: 911 STRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQI 970
Query: 560 LRRQARKVWWSNMVFPSSDGGG 581
+ R +K+ ++V D G
Sbjct: 971 VERAKQKMVLDHLVIQRMDTTG 992
>gi|385302190|gb|EIF46334.1| dna-dependent atpase [Dekkera bruxellensis AWRI1499]
Length = 547
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 144/520 (27%), Positives = 230/520 (44%), Gaps = 79/520 (15%)
Query: 113 GTGKTGLTLVFLQAYMKLHPRC--RPVI------IAPRSMLLTWEEEFKKWGIDIPFYNL 164
G GKT T+ + +K P +P+I P +++ W++EF KW
Sbjct: 10 GLGKTLQTISLIWTLLKQTPYVGQKPIISNKVLICCPVTLVANWKKEFHKW--------- 60
Query: 165 NKPELSGKENNGAVALMDN-----RKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
L K N+ +V +D R++ R V K+Y +L + Y + L
Sbjct: 61 ----LGRKPNSPSVLALDGAQQSFRQKDRQIVHGFSNTKVYK------VLIVGYEKMQSL 110
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
EL+ DL V DEGH +N + FKAL R+ RRRIIL+GTP QN+ E
Sbjct: 111 --EKELAEAKFDL---LVCDEGHRLKNSLSKSFKALQRLDIRRRIILTGTPIQNDLTEFY 165
Query: 280 NTLSLVR-------QEFGE-----VLRTVRKSGRE-----ISKAKHASLISSIGRCANHR 322
N +S V +EF + +LR+ R + K + +L+ + R
Sbjct: 166 NLISFVNPGVLGSFKEFQKKFIRPILRSRETGCRSKAVISLGKQRTETLVQETKKFILRR 225
Query: 323 DDEKLKELKEKIAPFVNVHKGTVLQESLPGL-----RHSVVILQPDEFQKRLCKAVEGV- 376
+ +L + K + +V + LQ L L +++ ++ + +E Q +A V
Sbjct: 226 TNAELVKYLPKRSDYVLFVPPSRLQLELFRLLAKTKKYTKIMEEEEELQSAGSRAKPSVT 285
Query: 377 KSFVELNYCVSLLSVHPSLLPQQ--FFESFDVDSAKLARLKLDPEAGIKTR-----FLLI 429
K + L + PSLL + F E D S + G K + L+
Sbjct: 286 KDSLSLMTTFRKICNSPSLLEEDXLFREICDDASGSGPGSAFAEQLGKKVKSGKINLLMK 345
Query: 430 LLEL----STNEKVLVFSQYIEPLTLIMEQLRH-RFNWREGQEVLYMDGKQDVKKRQSSI 484
LL L + +EKV+V S + + L +I + ++ R ++ +DG K R +
Sbjct: 346 LLALIYRNTQDEKVIVVSNFTQVLDVIEKTIQSLRLSYSR------LDGSTPSKDRSKLV 399
Query: 485 NVLNDPSSQAR-IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRV 543
+ N + +A + L S+KA G+NLVGASR++L D WNP V+ QA++R +R GQKR
Sbjct: 400 DSFNKSTKEACFVFLLSSKAGGMGLNLVGASRLILFDNDWNPSVDLQAMARIHREGQKRH 459
Query: 544 VHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGND 583
V +Y L+TS ++ +RQ K S+ S D
Sbjct: 460 VRIYRLLTSGCIDEKIFQRQLIKRNLSDRFVDDSASSDAD 499
>gi|363728319|ref|XP_003640489.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein 4 [Gallus gallus]
Length = 1924
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 136/524 (25%), Positives = 230/524 (43%), Gaps = 86/524 (16%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 727 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 771
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN DN
Sbjct: 772 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FTFEDNAI 829
Query: 186 RGRGKVGLIR---YVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
RG K ++ VK + +L SY +L++ D +D L V DE H
Sbjct: 830 RGGKKASRMKKEAAVKFH-------VLLTSY----ELITIDMAILGSIDWACLIV-DEAH 877
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L + +
Sbjct: 878 RLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFAD 937
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQP 362
I+K ++++K+L + + P + + +++P +V ++
Sbjct: 938 IAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVEL 979
Query: 363 DEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDS 408
QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 980 SPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA----- 1033
Query: 409 AKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNW 462
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 1034 PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH---- 1089
Query: 463 REGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVV 522
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1090 -EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSD 1148
Query: 523 WNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1149 WNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1191
>gi|116180352|ref|XP_001220025.1| hypothetical protein CHGG_00804 [Chaetomium globosum CBS 148.51]
gi|88185101|gb|EAQ92569.1| hypothetical protein CHGG_00804 [Chaetomium globosum CBS 148.51]
Length = 1644
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 126/489 (25%), Positives = 211/489 (43%), Gaps = 59/489 (12%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN I++ G GKT T+ FL + P +++AP S++ W + F W DI +
Sbjct: 471 GNNVILADEMGLGKTVQTVSFLSWLRNDRGQEGPFLVVAPLSVIPAWCDTFNHWAPDINY 530
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
PE + +D + K +L SY L
Sbjct: 531 VVYLGPEAARASIREHELFVDGNPK----------------KTKFNVLVTSYDYI--LAD 572
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
+ L GI + DE H +N ++ ++ L+ R++++GTP QNN EL
Sbjct: 573 AENLKGIKWQV---LAVDEAHRLKNRESQLYHKLNSFGIPCRVLITGTPIQNNLAELSAL 629
Query: 282 LSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRD-DEKLKELKEKIAPFVNV 340
L + G+VL + + +S A + + A + EKL+EL IAPF+
Sbjct: 630 LDFLNP--GKVL--IDEELELLSSADNKEVADEEQSEAKRKKTQEKLRELHTSIAPFILR 685
Query: 341 HKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCV----------SLLS 390
++ LP ++ ++ + Q +E K+ + NY SLL+
Sbjct: 686 RTKETVESDLPPKTEKIIRVELSDVQ------LEYYKNILTRNYAALRDASNGHKQSLLN 739
Query: 391 V---------HPSLLPQQFFESFDVDSAKLARLK-LDPEAGIKTRFLLILLELSTN-EKV 439
+ HP + S + ++K L +G +L +L + +V
Sbjct: 740 IMMELKKVSNHPYMFAGAEERVLAGSSRREDQIKGLITSSGKMMLLDQLLAKLKKDGHRV 799
Query: 440 LVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
L+FSQ ++ L ++ + LR R G + +DG R+ +IN N S L
Sbjct: 800 LIFSQMVKMLDILGDYLRVR-----GYQFQRLDGTIPAGPRRMAINHFNADDSDDFCFLL 854
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
ST+A GINL+ A V++ D WNP + QA++RA+R+GQKR V+VY L+ +T+E +
Sbjct: 855 STRAGGLGINLMTADTVIIYDSDWNPQADLQAMARAHRIGQKRPVNVYRLVAKQTIEEEV 914
Query: 560 LRRQARKVW 568
+ R K++
Sbjct: 915 VNRARNKLF 923
>gi|449468564|ref|XP_004151991.1| PREDICTED: DNA repair protein rhp26-like [Cucumis sativus]
gi|449522123|ref|XP_004168077.1| PREDICTED: DNA repair protein rhp26-like [Cucumis sativus]
Length = 1221
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 147/548 (26%), Positives = 240/548 (43%), Gaps = 83/548 (15%)
Query: 62 VPRDVRKKMFPHQREGFEFIWK---NIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
+P+ + ++F +Q+ G +++W+ AGGI DE+ G GKT
Sbjct: 386 IPQSIFDELFDYQKVGVQWLWELHCQRAGGIIGDEM------------------GLGKTV 427
Query: 119 LTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW-----------GIDIPFYNLNKP 167
L FL A + +I+ P +++ W+ E +KW P Y +
Sbjct: 428 QVLSFLGALHFSNIYKPSIIVCPVTLVRQWKREARKWCPRLLAEILHDSAHDPTYKNMRE 487
Query: 168 ELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYS--WKMGTGILGLSYRLFEKLVSGDEL 225
+ G + + D RK + K G R+ L + + +G+L +Y L GD+L
Sbjct: 488 KSDGSDESEDSEGSDYRKNSQPK-GTKRWDALINRVLRSESGLLITTYEQLRLL--GDKL 544
Query: 226 SGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
LD+ G + DEGH RN + + +++T RII++G+P QN +EL +
Sbjct: 545 ----LDIEWGYAILDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGSPIQNKLKELWSLFDF 600
Query: 285 VRQEFGEVLRTVRKS-GREISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPFVN 339
V VL IS +A+ +S+ RCA D + L ++ VN
Sbjct: 601 VFPGKLGVLPVFEAEFAVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVN 660
Query: 340 VHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV---EGVKSFVELNY-CVSLLSV---- 391
H LP V+ Q+ + +A VKS ++ N +S + V
Sbjct: 661 AH--------LPKKTEHVLFCSLTSEQRSVYRAFLASSEVKSILDGNRNSLSGIDVMRKI 712
Query: 392 --HPSLLPQQF-FESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYI 446
HP LL ++ F++ D +PE K + + +L++ +VL+F+Q
Sbjct: 713 CNHPDLLEREHAFQNPDYG---------NPERSGKMKVVEQVLKVWKEQGHRVLLFAQTQ 763
Query: 447 EPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCE 506
+ L ++ RF G MDG VK+R + I+ N+ S + + + +TK
Sbjct: 764 QMLDIL-----ERFLVGGGYTYRRMDGGTPVKQRMALIDEFNN-SCEVFVFILTTKVGGL 817
Query: 507 GINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
G NL GA RV++ D WNP + QA RA+R+GQ+R V VY LIT T+E RQ K
Sbjct: 818 GTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQQRDVTVYRLITRGTIEEKVYHRQIYK 877
Query: 567 VWWSNMVF 574
+ +N +
Sbjct: 878 HFLTNKIL 885
>gi|395858245|ref|XP_003801483.1| PREDICTED: DNA repair and recombination protein RAD54-like
[Otolemur garnettii]
Length = 739
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 134/540 (24%), Positives = 229/540 (42%), Gaps = 87/540 (16%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W+ + S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVKFLWECV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 201 LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 244
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ + ++ + IL +SY F V + + GL + DE
Sbjct: 245 GGSKDEIDRKLEGFMSQHGARVPSPILIISYETFRLHVGVLQKGSV-----GLVICDE-- 297
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+ + S + RR+ + S QEL + L +G T+ + E
Sbjct: 298 --------VLDSASSLSGRRKSVSS---LSTAVQELRHC-CLAGPGWGFKPATL-GTAHE 344
Query: 303 ISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ A+ D +E+L+EL + + +L + LP VV
Sbjct: 345 FKKHFELPILKGRDAAASEADRQLGEERLRELTTIVNRCLIRRTSDILSKYLPVKIEEVV 404
Query: 359 I--LQP--DEFQKRLCKAVEGVKSFVE---------LNYCVSLLSVHPSLLPQQFFE--- 402
L P E KR + + + E + L HP+L+ + E
Sbjct: 405 CCRLTPLQTELYKRFLRQAKPAEELREGKISVSSLSSITSLKKLCNHPALIYDKCVEEEA 464
Query: 403 ----SFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQ 455
+ DV + L+P+ K L +L ++ +N+KV++ S Y + L L +
Sbjct: 465 GFEGALDVFPPGYSSKGLEPQLSGKMLVLDYILAVTRSRSNDKVVLVSNYTQTLDLFEKL 524
Query: 456 LRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
R R LY +DG +KKR + N PSS + + S+KA G+NL+GA
Sbjct: 525 CRAR-------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGA 577
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 578 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 637
>gi|398364627|ref|NP_009629.6| DNA-dependent ATPase RDH54 [Saccharomyces cerevisiae S288c]
gi|341942271|sp|P38086.4|RDH54_YEAST RecName: Full=DNA repair and recombination protein RDH54; AltName:
Full=RAD homolog 54; AltName: Full=Recombination factor
TID1; AltName: Full=Two hybrid interaction with DMC1
protein 1; Includes: RecName: Full=DNA topoisomerase;
Includes: RecName: Full=Putative helicase
gi|329136720|tpg|DAA07193.2| TPA: DNA-dependent ATPase RDH54 [Saccharomyces cerevisiae S288c]
Length = 958
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 144/569 (25%), Positives = 248/569 (43%), Gaps = 77/569 (13%)
Query: 72 PHQREGFEFIWKNIAG-------GIDLDELKNS---TSTGGGNGCIISHAPGTGKTGLTL 121
PHQREG +F++ + G D+D S + +GC+++ G GKT +++
Sbjct: 298 PHQREGVKFMYDCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLMSI 357
Query: 122 VFL----------------QAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNL 164
+ Q+ + L C+ + ++ P +++ W+ EF KW NL
Sbjct: 358 TLIWTLIRQTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGNWKREFGKW------LNL 411
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
++ G + L K+ + ++K+ + +L + Y EKL+S E
Sbjct: 412 SRI--------GVLTLSSRNSPDMDKMAVRNFLKV---QRTYQVLIIGY---EKLLSVSE 457
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
L + V DEGH +N + + L + RR+++L+GTP QN+ E +
Sbjct: 458 ELEKNKHLIDMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDF 517
Query: 285 VRQE-FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
+ G R+ I++A+ + + + +E+ KE+ E F+
Sbjct: 518 INPGILGSFASFKRRFIIPITRARDTA--NRYNEELLEKGEERSKEMIEITKRFILRRTN 575
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAV-EGVK-SFVELNYCVSL--------LSVHP 393
+L++ LP ++ +P Q K + +G + F +L + SL + P
Sbjct: 576 AILEKYLPPKTDIILFCKPYSQQILAFKDILQGARLDFGQLTFSSSLGLITLLKKVCNSP 635
Query: 394 SLLPQQ-FFESFDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPL 449
L+ +++S D+ +G K + L+ LLE T EKV+V S Y + L
Sbjct: 636 GLVGSDPYYKSHIKDTQSQDSYSRSLNSG-KLKVLMTLLEGIRKGTKEKVVVVSNYTQTL 694
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGI 508
+I E L + G +DG K+R S + N +P+ L S K+ G+
Sbjct: 695 DII-ENLMNM----AGMSHCRLDGSIPAKQRDSIVTSFNRNPAIFG--FLLSAKSGGVGL 747
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NLVGASR++L D WNP V+ QA+SR +R GQK+ +Y L+T+ ++ L+RQ K
Sbjct: 748 NLVGASRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNS 807
Query: 569 WSNMVFPSSD----GGGNDQTTASEPLED 593
S S+ ND E L+D
Sbjct: 808 LSQKFLGDSEMRNKESSNDDLFNKEDLKD 836
>gi|301616286|ref|XP_002937591.1| PREDICTED: chromodomain-helicase-DNA-binding protein 5-like [Xenopus
(Silurana) tropicalis]
Length = 1906
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 142/543 (26%), Positives = 242/543 (44%), Gaps = 77/543 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 692 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 736
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV------ALMD 182
+ H + ++ AP S ++ WE EF+ W + FY + +G +++ AV + D
Sbjct: 737 EGHSKGPYLVSAPLSTIINWEREFEMWAPE--FYVVT---YTGDKDSRAVIRENEFSFED 791
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEG 241
N + KV R K K +L SY +L++ D IL + V DE
Sbjct: 792 NAIKSGKKV--FRMKKEAQIKF--HVLLTSY----ELITIDH--AILGSIEWACLVVDEA 841
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301
H +N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L +
Sbjct: 842 HRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLDGFLEEFA 901
Query: 302 EISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQ 361
+ISK ++++K+L + + P + + +++P +V ++
Sbjct: 902 DISK------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVE 943
Query: 362 PDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVD 407
+ QK+ K + ++F LN VSLL++ HP L P E+ +
Sbjct: 944 LSQMQKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLP 1002
Query: 408 SAKLARLKLDPEAGIKTRFLLILLELST-NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQ 466
+ L +G +L +L +VL+FSQ + L L+ + L + EG
Sbjct: 1003 NGSYDGNSLVKSSGKLMLLQKMLKKLKDGGHRVLIFSQMTKMLDLLEDFLEY-----EGY 1057
Query: 467 EVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPF 526
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1058 KYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPH 1117
Query: 527 VERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTT 586
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G + T
Sbjct: 1118 NDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMT 1177
Query: 587 ASE 589
E
Sbjct: 1178 KQE 1180
>gi|357010451|ref|ZP_09075450.1| helicase, swf/snf [Paenibacillus elgii B69]
Length = 1101
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 139/494 (28%), Positives = 224/494 (45%), Gaps = 95/494 (19%)
Query: 105 GCIISHAPGTGKTGLTLVFLQAYM-KLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFY 162
G I++ G GKT ++ FL + + ++ + +P +++AP S+L W E ++
Sbjct: 668 GGILADDMGLGKTLQSIAFLVSVLPEIRDQGQPALVVAPASLLYNWRNELNRFA------ 721
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV-- 220
PEL +G+ A+ RG+V +K S ++ SY L + +
Sbjct: 722 ----PELRAVIADGSSAV-------RGRV-----LKELSH---ADVVITSYPLLRRDIGR 762
Query: 221 -SGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+G ++L DE +N T +A+ ++ R R L+GTP +N+ +EL
Sbjct: 763 YAGHAFHTLIL--------DEAQAFKNYATQTAQAVKALRARYRFALTGTPVENSLEELW 814
Query: 280 NTLSLV-------RQEFGEVLR-TVRKSGRE--ISKAKHASLISSIGRCANHRDDEKLKE 329
+ V R+ FGE+ R TV K R + + K L + + + E L E
Sbjct: 815 SIFDAVFPELFPDRKAFGELFRETVAKRARPFLLRRVKSDVLKELPEKIESLQASELLPE 874
Query: 330 LKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLL 389
K+ ++ LQ+ L+H L D FQ+ K + G+ + L
Sbjct: 875 QKKLYVAYL-----AKLQKE--ALKH----LDADTFQQNRIKILAGITRLRQ-------L 916
Query: 390 SVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE--LSTNEKVLVFSQYIE 447
HP+L F E + SAK + LL L+E S ++LVFSQ+ E
Sbjct: 917 CCHPAL----FVEGYTGSSAKFEQ-------------LLELVEECRSAGRRMLVFSQFTE 959
Query: 448 PLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEG 507
L LI +L +R G Y+DGK +R N+ + + L S KA G
Sbjct: 960 MLGLIGRELGYR-----GVPYFYLDGKTPPAERVERCRRFNE--GERDLFLISLKAGGTG 1012
Query: 508 INLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR--RQAR 565
+NL GA V+L D+ WNP VE+QA+ RA+R+GQK+VV V L+T ++E DK+ +Q +
Sbjct: 1013 LNLTGADTVILYDLWWNPAVEQQAMDRAHRIGQKKVVQVIRLVTQGSVE-DKMHEIQQRK 1071
Query: 566 KVWWSNMVFPSSDG 579
K ++ P +G
Sbjct: 1072 KHLIDEVIQPGEEG 1085
>gi|327302918|ref|XP_003236151.1| DNA repair protein Rhp26/Rad26 [Trichophyton rubrum CBS 118892]
gi|326461493|gb|EGD86946.1| DNA repair protein Rhp26/Rad26 [Trichophyton rubrum CBS 118892]
Length = 1225
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 146/556 (26%), Positives = 228/556 (41%), Gaps = 99/556 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIW---KNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
+P D+ +F +Q+ G +++W + GGI DE+ G GKT
Sbjct: 387 LPGDIYPYLFDYQKTGVKWLWELYQQQVGGIIGDEM------------------GLGKTI 428
Query: 119 LTLVFLQAYMKLHPRCRPVIIA-PRSMLLTWEEEFKKWGIDIPF------------YNLN 165
+ FL P+I+ P +++ W EF +W PF N+
Sbjct: 429 QVIAFLAGIHYSKKLKGPIIVVCPPTVMKQWVNEFHRWWP--PFRVSILHTSGSGMVNIK 486
Query: 166 KPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225
+ V N RG R +K +L + L
Sbjct: 487 SESQAEDRYTSGVWGDRNSTSQRGNKAARRILKR--------VLEDGHVLVTTYAGLQTY 538
Query: 226 SGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
S +L+ + G+ V DEGH RN DT + ++T R+ILSGTP QNN EL +
Sbjct: 539 SSLLIPVDWGIAVLDEGHKIRNPDTSITIHCKELRTSHRLILSGTPMQNNLTELWSLFDF 598
Query: 285 V-----------RQEFGEVLRTVRKSGREISKAKHASL-ISSIGRCANHRDDEKLKELKE 332
V R +F +RT A ++L + + +CA + L++
Sbjct: 599 VFPMRLGTLVNFRNQFEFPIRTG-------GYANASNLQVQTAAKCA--------ETLRD 643
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKA--VEGVKSFV-----ELNYC 385
I+P++ + LP V+ + + Q+ +A G S + E Y
Sbjct: 644 AISPYLLQRFKIDVAADLPKKSEQVLFCKLTKVQRAAYEAFLASGEMSSILRGRREALYG 703
Query: 386 VSLLSV---HPSLLPQQFFES-FDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKV 439
+ +L HP L + + D + A+ K + + LLEL T K
Sbjct: 704 IDMLRKICNHPDLTQHKILSTKTDYNYGSGAKSG-------KMQVVKSLLELWKDTGHKT 756
Query: 440 LVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIML 498
L+F+Q+ + I+E+ FN G MDG +K RQS ++ N DP + L
Sbjct: 757 LLFAQH-RIMLDILERFIGGFN---GFNYRRMDGNTPIKVRQSMVDEFNNDPD--LHVFL 810
Query: 499 ASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWD 558
+TK G+NL GA RV++ D WNP + QA RA+RLGQKR V +Y L+T+ T+E
Sbjct: 811 LTTKVGGLGVNLTGADRVIIYDPDWNPSTDVQARERAWRLGQKREVTIYRLMTAGTIEEK 870
Query: 559 KLRRQARKVWWSNMVF 574
RQ K + +N +
Sbjct: 871 IYHRQIFKQFLTNKIL 886
>gi|326912771|ref|XP_003202720.1| PREDICTED: chromodomain-helicase-DNA-binding protein 4-like
[Meleagris gallopavo]
Length = 1922
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 136/524 (25%), Positives = 230/524 (43%), Gaps = 86/524 (16%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 727 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 771
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN DN
Sbjct: 772 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FTFEDNAI 829
Query: 186 RGRGKVGLIR---YVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
RG K ++ VK + +L SY +L++ D +D L V DE H
Sbjct: 830 RGGKKASRMKKEAAVKFH-------VLLTSY----ELITIDMAILGSIDWACLIV-DEAH 877
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L + +
Sbjct: 878 RLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFAD 937
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQP 362
I+K ++++K+L + + P + + +++P +V ++
Sbjct: 938 IAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVEL 979
Query: 363 DEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDS 408
QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 980 SPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA----- 1033
Query: 409 AKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNW 462
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 1034 PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH---- 1089
Query: 463 REGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVV 522
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1090 -EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSD 1148
Query: 523 WNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1149 WNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1191
>gi|308501284|ref|XP_003112827.1| CRE-LET-418 protein [Caenorhabditis remanei]
gi|308267395|gb|EFP11348.1| CRE-LET-418 protein [Caenorhabditis remanei]
Length = 1884
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 135/515 (26%), Positives = 226/515 (43%), Gaps = 64/515 (12%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT +L FL MK H + +I AP S ++ WE E + W D F
Sbjct: 616 GTDAILADEMGLGKTVQSLTFLYTLMKEGHCKGPFLIAAPLSTIINWEREAELWCPD--F 673
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL 215
Y + G ++ V + ++ R K G ++ + M +L SY
Sbjct: 674 YVVT---YVGDRDSRVVLREHEFSFVEGAVRTGPKAGKMKTTE----NMKFHVLLTSYET 726
Query: 216 --FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQN 273
+K + LS I G V DE H +N+ + FK L+ R++L+GTP QN
Sbjct: 727 INMDKTI----LSSIEW---GALVVDEAHRLKNNQSLFFKNLNEYTIHYRVLLTGTPLQN 779
Query: 274 NFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEK 333
N +EL + L+ + +E L EISK ++++++L
Sbjct: 780 NLEELFHLLNFLSKERFNQLEAFTAEFSEISK------------------EDQIEKLHNL 821
Query: 334 IAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVSL 388
+ P + + +P +V ++ QK+ K + ++F LN +SL
Sbjct: 822 LGPHMLRRLKADVLTGMPSKSELIVRVELSPMQKKWYKNI-LTRNFDALNVKNGGTQMSL 880
Query: 389 LSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTN-EK 438
++V HP L + E+ + L +G +L +L +
Sbjct: 881 MNVLMELKKCCNHPYLFVKASLEAPKEKNGMYEGTALIKNSGKFALLQKMLRKLKDGGHR 940
Query: 439 VLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498
VL+FSQ +T++++ + F EG + +DG + RQ +I+ N P +Q I L
Sbjct: 941 VLIFSQ----MTMMLD-IMEDFCDVEGYKYERIDGSITGQMRQDAIDRYNAPGAQQFIFL 995
Query: 499 ASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWD 558
ST+A GINL A V++ D WNP + QA SRA+RLGQK V +Y +T ++E
Sbjct: 996 LSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVEER 1055
Query: 559 KLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLED 593
+K+ +++V + GG ++ + L+D
Sbjct: 1056 ITSVAKKKMLLNHLVVRAGLGGKEGKSMSKSELDD 1090
>gi|5917757|gb|AAD56025.1|AF181828_1 chromodomain helicase DNA binding protein 1 [Nymphicus hollandicus]
Length = 918
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 132/507 (26%), Positives = 214/507 (42%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 121 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 178
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
N V L D R ++ + W ++ IL +Y +
Sbjct: 179 -------------NAVVYLGDITSRN--------MIRTHEWMHPQTKRLKFNILLTTYEI 217
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
K S L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 218 LLKDKSF--LGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 272
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 273 KELWSLLHFIMPEKFSSWEGFEEEHGKGREYGYA----------------------SLHK 310
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 311 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 370
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + H L+ F L L + + L++
Sbjct: 371 LNIMMELKKCCN----HCYLIKPPDDNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRER 425
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 426 GNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSED 479
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 480 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 539
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 540 VEEDILERAKKKMVLDHLVIQRMDTTG 566
>gi|440906808|gb|ELR57029.1| Chromodomain-helicase-DNA-binding protein 3, partial [Bos grunniens
mutus]
Length = 1940
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 134/501 (26%), Positives = 223/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 721 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 778
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 779 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 828
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 829 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 883
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 884 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 925
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 926 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 984
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK L+LL+
Sbjct: 985 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKASGKLMLLQKMLRKL 1039
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N +
Sbjct: 1040 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAHGA 1094
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1095 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1154
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1155 ASVEERITQVAKRKMMLTHLV 1175
>gi|301607520|ref|XP_002933353.1| PREDICTED: chromodomain-helicase-DNA-binding protein 2-like
[Xenopus (Silurana) tropicalis]
Length = 1809
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 135/510 (26%), Positives = 221/510 (43%), Gaps = 98/510 (19%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFY 162
N I++ G GKT T+ FL LH P +++ P S L +W+ EF+ W DI
Sbjct: 506 NSVILADEMGLGKTIQTISFLSYLFHLHLLYGPFLLVVPLSTLTSWQREFEVWAPDI--- 562
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRLF 216
N V + G +G ++ Y W KM L +Y +
Sbjct: 563 ------------NVVVYI--------GDLGSRNTIREYEWVHQQSKKMKFNALLTTYEIL 602
Query: 217 EKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQ 276
L LS I G+ DE H +NDD+ ++K L K+ R++++GTP QN+ +
Sbjct: 603 --LKDKAVLSSINWAFLGV---DEAHRLKNDDSLLYKTLIEFKSNARLLITGTPLQNSLK 657
Query: 277 ELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP 336
EL + L + E E E + +H GR D + L + + P
Sbjct: 658 ELWSLLHFIMPEKFECW--------EDFEDQHGK-----GR------DNGYQSLHKVLEP 698
Query: 337 FVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-----F 379
F+ +++SLP LR + ++Q ++ K L K G S
Sbjct: 699 FLLRRVKKDVEKSLPAKVEQILRVEMCVMQKQYYRWILTRNYKALSKGTRGSTSGFLNIV 758
Query: 380 VELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE------L 433
+EL C + + + P++ + +DS ++ I++ L+LL+
Sbjct: 759 MELKKCCNHCFL---IKPEETEKESRLDSL---------QSLIRSSGKLVLLDKLLTRLR 806
Query: 434 STNEKVLVFSQYIEPLTLIMEQL--RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPS 491
+VL+FSQ + L ++ E L +H R +DG + R+ +++ N
Sbjct: 807 ERGNRVLIFSQMVRMLDILAEYLAIKHYPFQR-------LDGSIKGELRKQALDHFNAEG 859
Query: 492 SQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLIT 551
S+ L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T
Sbjct: 860 SEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVT 919
Query: 552 SETLEWDKLRRQARKVWWSNMVFPSSDGGG 581
T+E D + R +K+ ++V D G
Sbjct: 920 RGTVEEDIIERAKKKMVLDHLVIQRMDTTG 949
>gi|344997520|ref|YP_004799863.1| SNF2-like protein [Caldicellulosiruptor lactoaceticus 6A]
gi|343965739|gb|AEM74886.1| SNF2-related protein [Caldicellulosiruptor lactoaceticus 6A]
Length = 1108
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 160/617 (25%), Positives = 270/617 (43%), Gaps = 115/617 (18%)
Query: 4 IKDIDPPFATSPSRRAEWREYNNVDPS-FLDDLN---SRDSGFDSQTGCDPFTHAQGTVW 59
+KD+D +A + +++ + S L++LN S+DS FD + T
Sbjct: 580 VKDLDISKKDLKKGKAIFSKFHAIYLSEILENLNLNISKDSAFD--VYVQKMKKIEDTTI 637
Query: 60 ELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGL 119
E +P ++ + + +Q+ G +++ S G G I++ G GKT
Sbjct: 638 E-IPENLNRILREYQKVGVKWL---------------SHLYLNGFGGILADDMGLGKTVQ 681
Query: 120 TLVFLQAYM-KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV 178
L F+ A KL+ C +++AP S++ W++E K++ D+
Sbjct: 682 VLSFISACKDKLNGPC--LVVAPTSLVYNWQQEAKRFTPDL-----------------KT 722
Query: 179 ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFV 237
++D R ++ I +K Y I+ SY L ++ + + DL + V
Sbjct: 723 VVVDGTPAKRSEI--IEKLKDYD------IVITSYSLLKRDID------LYKDLEFSVCV 768
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DE +N + +A+SRI + L+GTP +NN EL + V + L T
Sbjct: 769 VDEAQHIKNPQSLSKEAVSRINAKCCFALTGTPIENNLSELWSIFDFVLPGY---LGTHT 825
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV-NVHKGTVLQESLP----- 351
+ K D++ LK L++ I PFV K VL E LP
Sbjct: 826 RFSERFEKP-----------IVRQNDEKALKLLQKMITPFVIRRLKKDVLSE-LPEKIET 873
Query: 352 GLRHSVVILQPDEFQKRLCKAVEGVKSFVELN----YCVSLLSVHPSLL-----PQQFFE 402
L S+ Q + ++ L KA E +K+ +E + + S+ L P+ F E
Sbjct: 874 NLEVSMTPEQENIYKLYLLKAREDIKNEIEQKGFEKSKIKIFSILTRLRQICCHPKLFLE 933
Query: 403 SFDVDSAKLARLKLDPEAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
+++ S KL + +LE L + + +VFSQ+ E L ++ E+++ R
Sbjct: 934 NYEGSSGKLELFEE-------------ILEDVLESGHRAIVFSQWTEMLRILEERIKDR- 979
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
G E Y+DG ++R N N S Q ++ L S KA G+NL GA V+L D
Sbjct: 980 ----GFEYFYLDGSTKPEERIDMANSFN--SGQKQVFLISLKAGGFGLNLTGADVVILYD 1033
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGG 580
+ WNP VE QA+ RA+R+GQ+ V V+ LIT T+E Q +K + + S+
Sbjct: 1034 LWWNPAVENQAMDRAHRIGQENSVQVFRLITKNTIEERIFELQQKKKDLFDTIIQSA--- 1090
Query: 581 GNDQTTASEPLEDKILE 597
QT ++ ED++++
Sbjct: 1091 ---QTFLTQLSEDELMQ 1104
>gi|224043897|ref|XP_002197085.1| PREDICTED: chromodomain-helicase-DNA-binding protein 4 [Taeniopygia
guttata]
Length = 1919
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 136/524 (25%), Positives = 230/524 (43%), Gaps = 86/524 (16%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 720 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 764
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN DN
Sbjct: 765 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FTFEDNAI 822
Query: 186 RGRGKVGLIR---YVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
RG K ++ VK + +L SY +L++ D +D L V DE H
Sbjct: 823 RGGKKASRMKKEAAVKFH-------VLLTSY----ELITIDMAILGSIDWACLIV-DEAH 870
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L + +
Sbjct: 871 RLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEFAD 930
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQP 362
I+K ++++K+L + + P + + +++P +V ++
Sbjct: 931 IAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRVEL 972
Query: 363 DEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDS 408
QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 973 SPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA----- 1026
Query: 409 AKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNW 462
K+ D A I+ ++ +VL+FSQ + L L+ + L H
Sbjct: 1027 PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH---- 1082
Query: 463 REGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVV 522
EG + +DG RQ +I+ N P +Q L ST+A GINL A V++ D
Sbjct: 1083 -EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSD 1141
Query: 523 WNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1142 WNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1184
>gi|424764253|ref|ZP_18191696.1| protein, SNF2 family [Enterococcus faecium TX1337RF]
gi|402419822|gb|EJV52095.1| protein, SNF2 family [Enterococcus faecium TX1337RF]
Length = 1064
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 132/531 (24%), Positives = 226/531 (42%), Gaps = 93/531 (17%)
Query: 46 TGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNG 105
T H +G +L P+ + KM +Q++GF W + G G
Sbjct: 589 TMVQNLIHPEGYQAQL-PKGLNAKMREYQKQGFR--WLKMLGHYQF-------------G 632
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLN 165
I++ G GKT T+ FL + + +I+AP S++ W+ E KK+
Sbjct: 633 GILADEMGLGKTLQTIAFLLSEKEERESFSALIVAPASLIYNWQAEVKKFA--------- 683
Query: 166 KPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225
P LS + +++ K+ R ++ T I SY + ++ +
Sbjct: 684 -PSLS-------IQVINGNKKEREEL----------LAKDTDIRVTSYASLRQDLADYQS 725
Query: 226 SGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285
I + DE +N T +AL + +R LSGTP +NN +EL + + +
Sbjct: 726 QKI-----DYLILDEAQMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLFATI 780
Query: 286 RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAPFVN 339
F + RE++ + A +I R R D++ LK+L EK + +
Sbjct: 781 MPGFF----PTKTKFRELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYSALT 832
Query: 340 VHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQ 399
+ TV L +R + + + F+K + G+ ++ C P+
Sbjct: 833 EEQKTVYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQI--CCD---------PRL 881
Query: 400 FFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR 459
F E + S KL ++K L++ +VL+FSQ+ LT++ E+L
Sbjct: 882 FIEDYQGGSGKLEQVKD-----------LLVAAKENKRRVLLFSQFTGMLTILQEELAEL 930
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
G Y+ G + R S ++ N + + + L S KA G+NL GA V+L
Sbjct: 931 -----GISTFYLRGSTKPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTVILY 983
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
D+ WNP +E QA RA+R+GQK VV V +I+ T+E D L+++ R+++
Sbjct: 984 DLWWNPAIEEQAAGRAHRIGQKNVVEVRRMISEGTIEERMDSLQQEKRELF 1034
>gi|358339518|dbj|GAA29438.2| DNA excision repair protein ERCC-6-like, partial [Clonorchis
sinensis]
Length = 1661
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 153/580 (26%), Positives = 240/580 (41%), Gaps = 117/580 (20%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+PR + +K++ +Q++G +++W DL T GG I++ G GKT +
Sbjct: 532 LPRALYEKLYEYQKDGVKWLW-------DL-----HTRAPGG---ILADDMGLGKTVQVI 576
Query: 122 VFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPE----LSGKE 173
FL ++ R +I+ P S+L+TWE E K+W + F++ N+ + LS +
Sbjct: 577 AFLSGLFISSSKRLTALILMPVSVLVTWEAELKRWAPALRVVVFHDGNRSQRLRSLSMIQ 636
Query: 174 NNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP 233
NG + L G LI M + L R+ + V
Sbjct: 637 RNGGIVLTTYGMVAAGAEDLIVDFHANPQFMSAKLSNLEGRMAPEFVWD----------- 685
Query: 234 GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT------------ 281
+ DE H +N KA+ I R++L+GT QNN EL +
Sbjct: 686 -YLILDEAHKIKNPSAKTTKAVLSIAAEHRVLLTGTAVQNNLLELWSLYNCTHSGRLLGR 744
Query: 282 LSLVRQEFGEVLRTVRKSGREISKAKHASLIS-SIGRCANHRDDEKLKELKEKIAPFVNV 340
+ + E+ + ++ R+ ++ H L++ S+ R D L+ KE+I P
Sbjct: 745 MQTFKNEYEKPIKRAREKDASRAERAHGQLMAQSLRRII---DPYFLRRTKEEILPSGVD 801
Query: 341 HKGTVLQ-----------ESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLL 389
K +V E +P V+ + E Q+R + F+EL+ LL
Sbjct: 802 KKASVSPADPDIGLVTPVEPMPKKTELVLWIYLREVQER------SYRDFLELDQVKELL 855
Query: 390 ------------------SVHPSLL-PQQF----FESFDVDSAKLARLKLDPEAGI---- 422
HP LL P Q E V + ++ L P + +
Sbjct: 856 IGTTRRSPLMELLILKKLCDHPRLLSPHQCASLNLEVTSVPDERYSKHSLPPASQLVQES 915
Query: 423 -KTRFLLILLEL---------STNEKVLVFSQYIEPLTLIMEQLRHRFNWR-------EG 465
K FL +L+ T K L+FSQ I L + E++ N R G
Sbjct: 916 GKLTFLSLLMSSFLREKQPGSGTVPKTLIFSQSIRFLDM-AEKVILSINNRPETTSQFRG 974
Query: 466 QEVLYMDGK-QDVKKRQSSINVLN-DPSSQARIMLASTKACCEGINLVGASRVVLLDVVW 523
VL +DG+ V++R I + DPS +ML +T+ G+ L ASRV++LD W
Sbjct: 975 HRVLRLDGRLTKVEERLDVIRLFERDPSYT--VMLLTTQVGGVGLTLTAASRVIILDPSW 1032
Query: 524 NPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQ 563
NP + QA+ RAYR+GQK V VY L+T T+E RRQ
Sbjct: 1033 NPATDAQAVDRAYRIGQKSDVIVYRLLTCGTVEEKIYRRQ 1072
>gi|359076762|ref|XP_003587462.1| PREDICTED: chromodomain-helicase-DNA-binding protein 3 [Bos taurus]
Length = 1833
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 134/501 (26%), Positives = 223/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 586 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 643
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 644 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 693
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 694 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 748
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 749 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 790
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 791 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 849
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK L+LL+
Sbjct: 850 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKASGKLMLLQKMLRKL 904
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N +
Sbjct: 905 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAHGA 959
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 960 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1019
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1020 ASVEERITQVAKRKMMLTHLV 1040
>gi|440466839|gb|ELQ36083.1| chromodomain-helicase-DNA-binding protein 3 [Magnaporthe oryzae Y34]
gi|440481988|gb|ELQ62517.1| chromodomain-helicase-DNA-binding protein 3 [Magnaporthe oryzae P131]
Length = 1685
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 138/527 (26%), Positives = 236/527 (44%), Gaps = 79/527 (14%)
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNL 164
C+++ G GKT F+ A P+C P +++ P S W E K+W D+
Sbjct: 860 CVLADEMGLGKTIQICAFMAALALNEPKCWPFLVVVPNSTCPNWRREIKQWVPDLRVVCY 919
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
+ G + +AL N G+ + +V + S+ + +S R + K V
Sbjct: 920 H-----GGKVPQDLALR-NELFPDGRDNMKAHVVVMSYDSASD---MSTRTYFKNVHWKA 970
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
L V DEG +ND ++ AL +K RI+L+GTP QNN +EL N +
Sbjct: 971 L-----------VVDEGQRLKNDQNILYVALRAMKIPFRILLTGTPLQNNKRELFNLVQF 1019
Query: 285 VRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP-FVNVHKG 343
I +K+A+ + R A E + +L ++I P F+ K
Sbjct: 1020 ------------------IDSSKNAAKLDE--RFA-ELTKENIPQLHDEIKPYFLRRTKA 1058
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAVE----------------GVKSFVELNYCVS 387
VL+ LP + +V + Q++LCK++ GVK LN +
Sbjct: 1059 EVLK-FLPPMGQVIVPVTMSFVQEKLCKSIMTKSPQLIQAIFAKNKMGVKERGSLNNILM 1117
Query: 388 LLS---VHPSLLPQQFFES-FDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFS 443
L HP + + ++ D ++ + ++ P+ + +R L L E +VL+FS
Sbjct: 1118 QLRKCLCHPFVYSRDVEDTTLDPETMQRNLIEASPKLVLLSRMLPKLKE--KGHRVLIFS 1175
Query: 444 QYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLAST 501
Q+++ L +I + L G LY +DG ++Q I+ N PSS+ L ST
Sbjct: 1176 QFLDQLDIIEDFL-------AGLGFLYQRLDGTMSSLEKQKRIDEFNAPSSELFAFLLST 1228
Query: 502 KACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561
+A GINL A V+++D +NP + QA+SRA+R+GQ V + L+T ++E ++
Sbjct: 1229 RAGGVGINLATADTVIIMDPDFNPHQDLQALSRAHRIGQMNKVLCFQLMTKGSVEEKIMQ 1288
Query: 562 RQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSE 608
+K+ +++ + D D+ A + LE + QL+N+ +E
Sbjct: 1289 IGRKKMALDHVLIEAMD----DEEAAPDDLESILKHGAEQLFNDDNE 1331
>gi|385799309|ref|YP_005835713.1| SNF2-related protein [Halanaerobium praevalens DSM 2228]
gi|309388673|gb|ADO76553.1| SNF2-related protein [Halanaerobium praevalens DSM 2228]
Length = 1082
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 139/526 (26%), Positives = 231/526 (43%), Gaps = 105/526 (19%)
Query: 62 VPRDVRKKMFPHQREGFE---FIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
+P V+ K+ +Q+ G+ F+ K GGI D++ G GKT
Sbjct: 607 IPAVVKNKLRDYQKNGYNWLRFLHKYHFGGILADDM------------------GLGKTL 648
Query: 119 LTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV 178
L +++ + P+ +++ PR+++ W+EE K+ P+L G+
Sbjct: 649 QMLTLIKS---VAPKKAALVLCPRTLIYNWQEEAAKFF----------PKLKTLVYYGSP 695
Query: 179 ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVF 238
A+ RK + + ++ SY + V D+L+ + +
Sbjct: 696 AV---RKEMQNEFK------------DYDLIISSYSTISRDV--DDLNAENISF-SFAIL 737
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK 298
DE +N T KA+ I R+ L+GTP +N+ +EL + + + +
Sbjct: 738 DEAQHIKNHRTKRAKAVKNITAHSRLALTGTPLENSIEELWSIFDFLMPGYLGNYSYFKN 797
Query: 299 SGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV-NVHKGTVLQESLPGLRH-- 355
+ ++ I + + + EK+ ELKE++APF+ KG VL+E + +
Sbjct: 798 N-----------FLNPISK---NNEKEKMLELKERVAPFILRRRKGEVLKELPDKIINVH 843
Query: 356 --SVVILQPDEFQKRLCKAVEGVKSFVE--------LNYCVSLLSV-----HPSLLPQQF 400
S+ LQ D +Q L + V +N +L + HP+L+ +
Sbjct: 844 PVSMTQLQADSYQTVLADLRGELSQTVSDKGFNRSRINILAALTKLRQICNHPALILGEK 903
Query: 401 FESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
+++ S KL LK L+ LS K++VFSQ+++ L LI +L
Sbjct: 904 ASTYN--SGKLEALKE-----------LLADALSGGHKIIVFSQFVKMLKLIRSELD--- 947
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
++G LY+DG +KR + N+ + + +I L S KA G+NL A VV +D
Sbjct: 948 --QQGLNYLYLDG--STRKRMQKVKEFNN-NCEVKIFLISLKAGGVGLNLTAADMVVHVD 1002
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP VERQA RA+RLGQ+ V VY LIT T+E L+ Q RK
Sbjct: 1003 PWWNPMVERQATDRAHRLGQQNRVMVYKLITRGTVEEKMLKLQERK 1048
>gi|123454531|ref|XP_001315018.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
gi|121897682|gb|EAY02795.1| F/Y-rich N-terminus family protein [Trichomonas vaginalis G3]
Length = 1656
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 126/514 (24%), Positives = 221/514 (42%), Gaps = 84/514 (16%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM 128
++F +Q EG ++ KN I+ CI++ G GKT + F +
Sbjct: 215 QLFNYQLEGVNWLLKNWYSDIN---------------CILADEMGLGKTIQAVAFFERIH 259
Query: 129 KLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG 187
++ P ++IAP + L W+ + + W + V ++
Sbjct: 260 RVEKLPGPYMVIAPLATLPHWQRQIESW------------------TDLYVIRYTGNRQA 301
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND 247
R + + K S ++ I SY + K V DEL P FV DE H +N
Sbjct: 302 REMLREYEFYKSNSEQVKFDIFLTSYEVLYKDV--DELRH--FKFPA-FVVDEAHRLKNK 356
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAK 307
++ + A+ +KT R++L+GTP QN+ +EL++ L +
Sbjct: 357 NSKILSAIQHLKTSFRVLLTGTPLQNSIEELQSLLEFL---------------------- 394
Query: 308 HASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQK 367
H S + N D + +++L+ ++ P + +S+ +++ ++QK
Sbjct: 395 HPGEFSDLN---NDMDAQDIQKLRVRLQPHLLRRLKVDTDQSIAPKEETIIECTMTKYQK 451
Query: 368 RLCKAV-EGVKSFVE-----LNYCVSL--LSVHPSLLPQQFFESFDVDSAKLARLKLDPE 419
+ +A+ E SF+ LN + L + +HP L+ + + D + E
Sbjct: 452 QFYRAILEQNSSFLSGGTNLLNIAMDLRKVCIHPFLI-KGAEDKILADMGYTNQPDKALE 510
Query: 420 AGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDG 473
A I++ +IL++ + +VL+FSQ L ++ + L G + L +DG
Sbjct: 511 AIIRSSGKMILIDKLLPKLKADGHRVLIFSQMTNLLDILQDYLAAT-----GYKFLRLDG 565
Query: 474 KQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAIS 533
+ RQS I+ N P S I L ST+A GINL A V++ D WNP + QA +
Sbjct: 566 QVKPSVRQSLIDHFNAPDSDDFIFLLSTRAGGLGINLNAADTVIIFDSDWNPQNDLQAQA 625
Query: 534 RAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567
R +R+GQ++ V VY LIT T E + ++K+
Sbjct: 626 RCHRIGQQKTVKVYRLITKGTYEQNMFEISSKKL 659
>gi|257867846|ref|ZP_05647499.1| Snf2 family protein [Enterococcus casseliflavus EC30]
gi|257874174|ref|ZP_05653827.1| Snf2 family protein [Enterococcus casseliflavus EC10]
gi|257801929|gb|EEV30832.1| Snf2 family protein [Enterococcus casseliflavus EC30]
gi|257808338|gb|EEV37160.1| Snf2 family protein [Enterococcus casseliflavus EC10]
Length = 1054
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 118/473 (24%), Positives = 204/473 (43%), Gaps = 79/473 (16%)
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNL 164
G I++ G GKT T+ +L + + + +I+AP S+ W++E K++
Sbjct: 623 GGILADEMGLGKTVQTISYLLSEKQEKQKLNALIVAPASLTFNWQQEIKRFA-------- 674
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
P +S +G + + V + Y L D
Sbjct: 675 --PTISASVISGTKEEREGQMAQPADVRITSYASLRQ---------------------DI 711
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
+ LDL L + DE +N T +AL ++ +R LSGTP +NN +EL + +
Sbjct: 712 DAYQALDLTCL-ILDEAQMVKNSATKTAQALRSLEVPQRFALSGTPIENNLEELWSLFQM 770
Query: 285 V-------RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPF 337
+ +Q+F E+ S +EI+K ++ + H +KL+
Sbjct: 771 IMPGFFPNKQKFKEL------STQEIAKMIKPFILRRDKKSVLHDLPQKLET---NYYSV 821
Query: 338 VNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLP 397
+ + + L +R + + F+K + G+ ++ C P
Sbjct: 822 LTEEQKKIYLAYLRQMREEIAQMDSTSFRKNRISILAGLTRLRQI--CCD---------P 870
Query: 398 QQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLR 457
+ F E ++ S KL ++K L+L +VL+FSQ+ L++I E+L
Sbjct: 871 RLFVEDYEGSSGKLEQVKD-----------LLLAAKENGRRVLLFSQFTSMLSIIEEELA 919
Query: 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
+EG E Y+ G + R + ++ N S + + L S KA G+NL GA V+
Sbjct: 920 -----QEGFESFYLRGSTPPQDRLTMVDAFN--SGEKDVFLISLKAGGTGLNLTGADTVI 972
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
L D+ WNP VE QA RA+R+GQK VV V+ +I T+E D L+++ R+++
Sbjct: 973 LYDLWWNPAVEEQAAGRAHRIGQKNVVEVWRMIAEGTIEERMDALQQEKRELF 1025
>gi|146165350|ref|XP_001014826.2| SNF2 family N-terminal domain containing protein [Tetrahymena
thermophila]
gi|146145551|gb|EAR94494.2| SNF2 family N-terminal domain containing protein [Tetrahymena
thermophila SB210]
Length = 1612
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 136/523 (26%), Positives = 222/523 (42%), Gaps = 89/523 (17%)
Query: 97 STSTGGGNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155
S S N I++ G GKT T+ FL Y + +++AP S L W EF W
Sbjct: 660 SESYNKANNVILADEMGLGKTVQTVSFLNYLYYEKDIDGPFMVVAPASTLYNWLREFAIW 719
Query: 156 G--IDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSY 213
G ++ Y N+ S L+R+ + Y +K+ +
Sbjct: 720 GDKFNVLVYTGNQASRS----------------------LVRHREFY-FKIKNPLKKGKK 756
Query: 214 RL-----FEKLVSGDELSGILLDLPGL-------FVFDEGHTPRNDDTCMFKALSRIKTR 261
+ F L++ + + + D L V DE H +N+++ FK S I TR
Sbjct: 757 KKDLVPKFNALITSYDTA--INDAHFLRKIQWECLVVDEAHRLKNNESKFFKISSTIATR 814
Query: 262 RRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR--KSGREISKAKHASLISSIGRCA 319
+++L+GTP QNN EL N + + + + ++ K + + + +
Sbjct: 815 HKVLLTGTPLQNNILELLNLIEFICPQKAKTMKNFESLKMFLQTTTTQTKQQQQQDEQIP 874
Query: 320 NHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV------ 373
+ L EL + +AP + K T + LP + ++ + + QK K V
Sbjct: 875 EAERKKALSELTKMLAPHLLRRKKTDVDLELPEMEEIIIKISLTDTQKYYYKNVLVKNYD 934
Query: 374 ---------EGVKSFVELNYCVSLLSV--HPSLL----------PQQFFESFDVDSAKLA 412
+ F LN +SL V HPSL +F E F VD +
Sbjct: 935 NLKLLDAKSKNFSKFSLLNILMSLRLVCNHPSLFLYKKKYLIPKKDKFQEEF-VDCSN-- 991
Query: 413 RLKLDPEAGIKTRFL--LILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY 470
K +FL +I L N K+L+FSQ+ T++++ + FN++ G
Sbjct: 992 ----------KLKFLERMIPKLLQQNHKMLIFSQF----TMMLDIMGEFFNFK-GWAFER 1036
Query: 471 MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQ 530
+DG V RQ +I+ N S+A+I L ST+A GINL A + D +NP+ + Q
Sbjct: 1037 LDGTTSVIDRQKTIDSFNSKDSKAKIFLLSTRAGGLGINLTSADTIFFTDSDFNPYRDVQ 1096
Query: 531 AISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
AISRAYR+GQ+ V VY L++ + E + RK+ +++
Sbjct: 1097 AISRAYRMGQESKVKVYRLVSKYSAEERIIEIATRKLLLESII 1139
>gi|26340418|dbj|BAC33872.1| unnamed protein product [Mus musculus]
Length = 1081
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 131/507 (25%), Positives = 213/507 (42%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 497 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 554
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
N V L D R ++ + W ++ IL +Y +
Sbjct: 555 -------------NAVVYLGDINSRN--------MIRTHEWMHPQTKRLKFNILLTTYEI 593
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
L L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 594 L--LKDKAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 648
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 649 KELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYAS----------------------LHK 686
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 687 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 746
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + H L+ F L L + + L++
Sbjct: 747 LNIMMELKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRER 801
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 802 GNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSED 855
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 856 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 915
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 916 VEEDILERAKKKMVLDHLVIQRMDTTG 942
>gi|257075448|ref|ZP_05569809.1| helicase [Ferroplasma acidarmanus fer1]
Length = 1015
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 120/472 (25%), Positives = 209/472 (44%), Gaps = 75/472 (15%)
Query: 100 TGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDI 159
TG G GC ++ G GKT + FL ++ + +I+ P S++ WE E K+
Sbjct: 553 TGAGFGCCLADDMGLGKTIEIIAFLLDRLE-NNGSTSLILCPTSVISNWEHEIHKFA--- 608
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFE-- 217
P L+ ++G ++RK+ + I K I+ SY L +
Sbjct: 609 -------PSLNVYIHHG-----NSRKKDDNFIDNITDYK---------IVLTSYSLLQRD 647
Query: 218 -KLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQ 276
K +S GI + DE +N T +A+ ++ +I L+GTP +N Q
Sbjct: 648 IKFLSQVNWDGI--------IADEAQYIKNYSTKQSRAIRSLQGNFKIALTGTPIENRLQ 699
Query: 277 ELENTLSLV-------RQEFGEVLRT-VRKSGREISKAKHASLISSIGRCANHRDDEKLK 328
+L + + ++F E + + G E + +L++ + D ++
Sbjct: 700 DLRSIFEFINPGYLSGEKKFRETFSIPIERYGDENAMNALNTLVNPMILRRVKTDKSIIQ 759
Query: 329 EL--KEKIAPFVNV--HKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY 384
+L KE++ ++ + + ++ + ++ + SV + E + + + +K ++
Sbjct: 760 DLPDKEEVKVYIPLTGEQASLYEAAVNTMLESVNTKKGIERKSVILSTITKLKRLLD--- 816
Query: 385 CVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQ 444
HPSL+ D S KL RL+ E I +N+K LVF+Q
Sbjct: 817 -------HPSLVSGDLDRRLD-RSEKLVRLREMLEEAI-----------DSNQKTLVFTQ 857
Query: 445 YIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKAC 504
Y + +I E++ + G+E LY++G + RQ+ + DP +I + S KA
Sbjct: 858 YTDAGKIIKEEMLKKL----GEEALYLNGSTPMSLRQNMVERFQDPDG-PKIFIISVKAG 912
Query: 505 CEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
GINL A+ V+ D WNP VE QA RAYR+GQ + VHVY I++ T+E
Sbjct: 913 GAGINLTAATNVIHFDRWWNPSVEDQATDRAYRIGQMKNVHVYKFISTGTIE 964
>gi|239615027|gb|EEQ92014.1| DNA repair and recombination protein RAD26 [Ajellomyces
dermatitidis ER-3]
gi|327349863|gb|EGE78720.1| DNA repair and recombination protein RAD26 [Ajellomyces
dermatitidis ATCC 18188]
Length = 1260
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 142/545 (26%), Positives = 234/545 (42%), Gaps = 76/545 (13%)
Query: 62 VPRDVRKKMFPHQREGFEFIW---KNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
VP D+ +F +Q+ G +++W + GGI DE+ G GKT
Sbjct: 420 VPGDIYPYLFDYQKTGVQWLWELYQQKVGGIIGDEM------------------GLGKTI 461
Query: 119 LTLVFLQAYMKLHPRCRPVII-APRSMLLTWEEEFKKWGIDIPF-YNLNKPELSGKENNG 176
+ FL +PVI+ P +++ W EF +W PF ++ SG N
Sbjct: 462 QVIAFLAGLHHSRILTKPVIVVCPPTVMKQWVNEFHRWWA--PFRVSILHTSGSGMVNLR 519
Query: 177 AVALMDNRKRGR-----GKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLD 231
+ D R + GL + K + ++ +L + L +L+
Sbjct: 520 RESYADARLESQLWEPDQPRGLTKEQKA-AKRILKRVLEEGHVLVTTYSGLQTYCSLLIP 578
Query: 232 LP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-RQEF 289
+ G + DEGH RN DT + ++T R+ILSGTP QN+ EL + V
Sbjct: 579 VDWGCAILDEGHKIRNPDTAITIHCKELRTAHRLILSGTPMQNSLTELWSLFDFVFPMRL 638
Query: 290 GEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTV 345
G ++ + I + +A+ + + +CA + LK+ I+P++
Sbjct: 639 GTLVNFRNQFEFPIRQGGYANASNLQVQTAAKCA--------ETLKDAISPYLLQRFKID 690
Query: 346 LQESLPGLRHSVVILQPDEFQKRLCKAVEG-------VKSFVELNYCVSLLSV---HPSL 395
+ LP V+ + + Q+ +A G ++ E Y + +L HP L
Sbjct: 691 VAADLPKKSEQVLFCKLTKIQRSAYEAFLGSNEMSSILRGRREALYGIDMLRKICNHPDL 750
Query: 396 LPQQFFE---SFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLT 450
+ S++ SA ++G K + + LLEL T K L+F+Q+
Sbjct: 751 PEHKTLSKKSSYNYGSAS--------KSG-KMQIVKSLLELWRDTGHKTLLFAQH----- 796
Query: 451 LIMEQLRHRF-NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509
IM + RF G + MDG +K RQS ++ N+ + + L +TK G+N
Sbjct: 797 RIMLDILERFIKSLSGFKYQRMDGNTPIKLRQSMVDEFNN-NPDIHVFLLTTKVGGLGVN 855
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
L GA RV++ D WNP + QA R++RLGQKR V +Y L+T+ T+E RQ K +
Sbjct: 856 LTGADRVIIYDPDWNPSTDVQARERSWRLGQKREVTIYRLMTAGTIEEKIYHRQIFKQFL 915
Query: 570 SNMVF 574
+N +
Sbjct: 916 TNKIL 920
>gi|338214218|ref|YP_004658279.1| SNF2-like protein [Runella slithyformis DSM 19594]
gi|336308045|gb|AEI51147.1| SNF2-related protein [Runella slithyformis DSM 19594]
Length = 1284
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 128/524 (24%), Positives = 227/524 (43%), Gaps = 103/524 (19%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+++ + P+Q EG++ W + LDE G GC+ G GKT L
Sbjct: 817 LPQNITATLRPYQEEGYK--WLHF-----LDEF-------GWGGCLADDM-GLGKTLQML 861
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
FLQ +P+ +++ P++++ W+ E K+ D+ Y P+ +
Sbjct: 862 TFLQEQKNRNPKGVHLVVVPKTLIFNWQAEATKFCPDLTLYVHTGPQRTKN--------- 912
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
+R Y + T G S R +L+S ++LD E
Sbjct: 913 ------------VRVFNRYDIILST--YG-SVRSDIELLSSFRFHYVVLD--------EA 949
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301
+N D+ + KA+ + + R+ ++GTP +NN +L + + F
Sbjct: 950 QAIKNPDSMISKAVKLLNAQNRLTMTGTPVENNTFDLYSQFDFLNPGF--------LGHE 1001
Query: 302 EISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQ 361
+ + ++A+LI ++D + EL+ I PF+ + + LP +V+ +
Sbjct: 1002 DFFRTEYATLIDK------YQDKTRAAELRRLIYPFMLKRTKEEVAKDLPEKTETVLYCE 1055
Query: 362 PDEFQKRLCKAVEG----------------VKSFVELNYCVSLLSV--HPSLLPQQFFES 403
D+ Q+++ A SF+ L + L + P+LL E
Sbjct: 1056 MDKRQRKVYNAFRDKYRDMIAGKMAEVGREQASFLILEGLLKLRQICDSPALLSDD--ED 1113
Query: 404 FDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQL-RHRFNW 462
+ +S KLA + + E E +++ K+++FSQ+++ L LI ++L R R +
Sbjct: 1114 YGQESVKLAEIVREIE------------ENASHHKIVIFSQFLKMLDLIRQKLERDRIPY 1161
Query: 463 REGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVV 522
Y+DGK + R + +N + R+ L S KA G+NL A V L+D
Sbjct: 1162 E------YLDGK--TQDRAARVNRFQG-DDECRVFLMSLKAGGVGLNLTEADYVYLVDPW 1212
Query: 523 WNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
WNP VE+QAI R +R+GQ + V Y +I +T+E ++ Q RK
Sbjct: 1213 WNPAVEQQAIDRVHRIGQTKRVFAYRMICKDTVEEKIVQLQDRK 1256
>gi|410919217|ref|XP_003973081.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein 5-like [Takifugu rubripes]
Length = 1982
Score = 126 bits (316), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 135/525 (25%), Positives = 231/525 (44%), Gaps = 73/525 (13%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 685 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 729
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGR 188
+ H + ++ AP S ++ WE EF+ W D FY + +G +++ A+ +
Sbjct: 730 EGHSKGPFLVSAPLSTIINWEREFEMWAPD--FYVVT---YTGDKDSRAIIRENEFTFED 784
Query: 189 GKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDEGHT 243
V R K++ K T I F L++ EL I + G V DE H
Sbjct: 785 SAVKSGR--KVFRMKKDTPIK------FHILLTSYELITIDQAILGSVTWACLVVDEAHR 836
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREI 303
+N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +I
Sbjct: 837 LKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADI 896
Query: 304 SKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPD 363
SK ++++K+L + + P + + +++P +V ++
Sbjct: 897 SK------------------EDQIKKLHDVLGPHMLRRLKVDVFKNMPAKTELIVRVELS 938
Query: 364 EFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSA 409
QK+ K + ++F LN VSLL++ HP L P E+ + +
Sbjct: 939 PMQKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPMLPNG 997
Query: 410 KL-ARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEV 468
L + + ++ +VL+FSQ + L L+ + L EG +
Sbjct: 998 SYDGNLLVKSSGKLTLLQKMLKKLKDEGHRVLIFSQMTKMLDLLEDFLEF-----EGYKY 1052
Query: 469 LYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVE 528
+DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP +
Sbjct: 1053 ERIDGGITGSLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLASADTVIIYDSDWNPHND 1112
Query: 529 RQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
QA SRA+R+GQ R V +Y +T ++E + RK+ +++V
Sbjct: 1113 IQAFSRAHRIGQNRKVMIYRFVTRGSVEERITQVAKRKMMLTHLV 1157
>gi|171691859|ref|XP_001910854.1| hypothetical protein [Podospora anserina S mat+]
gi|170945878|emb|CAP72679.1| unnamed protein product [Podospora anserina S mat+]
Length = 1274
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 131/503 (26%), Positives = 217/503 (43%), Gaps = 87/503 (17%)
Query: 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGID---IPFY 162
I++ G GKT + L + PR P +++ P + W E KKW D + +Y
Sbjct: 568 ILADEMGLGKTVQIVALLYTLIMTKPRIWPFLVVVPNATCANWRREIKKWAPDLRVVAYY 627
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222
+ + KE L R M ++ +SY + +
Sbjct: 628 GGRVSQQAAKE----YELFPGNTRD----------------MKAHVVIMSYDSVKDSETR 667
Query: 223 DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
S + GL V DE +ND+ ++KAL+ + +++L+GTP QNN +EL N L
Sbjct: 668 SRFSSV--KWAGLIV-DEAQALKNDENSLYKALNMLNIPFKVLLTGTPLQNNKRELFNLL 724
Query: 283 SLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP-FVNVH 341
+ KA+ + + + E L+ L + I P F+
Sbjct: 725 QFIDPSM---------------KAEQ------LDQEYDQITSENLRHLHDLIRPYFLRRT 763
Query: 342 KGTVLQESLPGLRHSVVILQPDEFQKRLCKAV-----EGVKS------------------ 378
K VL LP + +V + Q+RLCK++ + ++S
Sbjct: 764 KAEVLT-FLPTMAQIIVPVSMSVLQERLCKSIMEKNPQLIRSIFAQGKLKANERGSLSNI 822
Query: 379 FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STN 436
++L C+ HP + Q E ++ S +L R L EA K L I+L
Sbjct: 823 LMQLRKCL----CHP-FIYSQAIEDRNL-SPELTRRNL-IEASSKLMLLEIMLPKLKERG 875
Query: 437 EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI 496
+VL+FSQ+++ LT ++E N R + +DG Q ++Q I+ N P S
Sbjct: 876 HRVLIFSQFLDQLT-VLEDFLMSLNLRHER----LDGSQSSLEKQKKIDAYNAPDSDIFC 930
Query: 497 MLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
ML ST+A GINL A V++LD WNP + QA+SRA+R+GQ++ V + L+T ++ E
Sbjct: 931 MLLSTRAGGVGINLATADTVIILDPDWNPHQDIQALSRAHRIGQRKKVLCFQLVTVDSAE 990
Query: 557 WDKLRRQARKVWWSNMVFPSSDG 579
L+ +K+ +++ + D
Sbjct: 991 EKILQIGRKKMALDHLLIETMDN 1013
>gi|357602534|gb|EHJ63440.1| chromodomain-helicase-DNA-binding protein 1 [Danaus plexippus]
Length = 1822
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 128/502 (25%), Positives = 217/502 (43%), Gaps = 79/502 (15%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVI-IAPRSMLLTWEEEFKKWGIDIPFY 162
N I++ G GKT T+ FL K P + + P S + W+ EF +W DI
Sbjct: 487 NSVILADEMGLGKTIQTICFLYYLFKSQQLYGPFLCVVPLSTMTAWQREFAQWAPDI--- 543
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL-FEKLVS 221
V + G V ++ + W + S RL F +++
Sbjct: 544 -------------NVVTYI-------GDVTSRDIIRQFEWSFAS-----SKRLKFNAILT 578
Query: 222 GDELSGILLDLPGLFVF-------DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNN 274
E+ +L D L F DE H +NDD+ ++KAL +T R++++GTP QN+
Sbjct: 579 TYEI--LLKDRQFLRSFSWACLLVDEAHRLKNDDSLLYKALKEFETNHRLLVTGTPLQNS 636
Query: 275 FQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKI 334
+EL L + E K + + + ++L +++
Sbjct: 637 LKELWALLHFIMPYKFETWEEFEKDHEDAATKGY-------------------EKLHKQL 677
Query: 335 APFVNVHKGTVLQESLPGLRHSVVILQPDEFQKR------------LCKAVEG-VKSFVE 381
PF+ + +++SLP ++ ++ QK+ L K V+G + +F+
Sbjct: 678 EPFILRRQKKDVEKSLPAKVEQILRVEMTSIQKQYYKWILTKNYSALRKGVKGSINTFIN 737
Query: 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL-STNEKVL 440
+ + H L + FES + A KL +G +L L T +VL
Sbjct: 738 IVIELKKCCNHALLTKPEDFESRASLATTDAVEKLLRGSGKLLLLDKLLCRLKETGHRVL 797
Query: 441 VFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
+FSQ + L ++ E L+ R F ++ +DG + R+ +++ N SQ L
Sbjct: 798 IFSQMVRMLDILAEYLQRRHFPFQR------LDGSIKGEIRKQALDHFNAEGSQDFCFLL 851
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
ST+A GINL A V++ D WNP + QA +RA+R+GQK V++Y L+T+ ++E D
Sbjct: 852 STRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEDI 911
Query: 560 LRRQARKVWWSNMVFPSSDGGG 581
+ R RK+ ++V D G
Sbjct: 912 VERAKRKMVLDHLVIQRMDTTG 933
>gi|358379983|gb|EHK17662.1| hypothetical protein TRIVIDRAFT_160093 [Trichoderma virens Gv29-8]
Length = 1133
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 149/554 (26%), Positives = 235/554 (42%), Gaps = 103/554 (18%)
Query: 62 VPRDVRKKMFPHQREGFEFI---WKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
+P DV +F +Q+ G +++ +K GGI DE+ G GKT
Sbjct: 365 LPGDVYPSLFGYQKTGVQWLAELYKQNVGGIIGDEM------------------GLGKTV 406
Query: 119 LTLVFLQAYMKLHPRCRPVII-APRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGA 177
+ F+ A +PVI+ AP ++L W EF +W + L+ SG N A
Sbjct: 407 QLIAFIAALHYSKKLKKPVIVVAPATLLRQWVSEFHRWWPPLRVSILHSSG-SGMLNPAA 465
Query: 178 VALMD-------NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILL 230
D K + ++R V + T GL D L G+
Sbjct: 466 EDDYDVEHFSPMATKSEKAARKIVRGVVQKGHVLVTTYTGLQ-------TYADLLLGVEW 518
Query: 231 DLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR-QEF 289
D V DEGH RN + + + T R+ILSGTP QNN EL + +
Sbjct: 519 DYA---VLDEGHKIRNPNAEITVTCKELNTPNRLILSGTPIQNNLTELWSLFDFIYPMRL 575
Query: 290 GEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTV 345
G ++ ++ I + +A+ + + +CA + LKE I+ ++
Sbjct: 576 GTLVNFKQQFEIPIRQGGYANASNLQVMTAEKCA--------EALKETISEYL------- 620
Query: 346 LQESLPGLRHSVVILQPDEFQKRL-CKAVEGVKSFVE-----------LN------YCVS 387
L L+ V P++ ++ L CK EG + E LN Y +
Sbjct: 621 ----LQRLKVDVAADLPEKTEQVLFCKLTEGQRKAYETFLRSDEVSAILNRTRQSLYGID 676
Query: 388 LLSV---HPSLLPQQ--FFESFDVDSAKL-ARLKLDPEAGIKTRFLLILLELSTNEKVLV 441
+L HP LL + + ++V + K+ A+L+L T+ LL + + K L+
Sbjct: 677 ILRKICNHPDLLDKSLAYKPGYEVGNPKMSAKLQL-------TKDLLQKVMIPNGHKTLL 729
Query: 442 FSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLAS 500
FSQ + L +I + +R+ G L MDG+ + +RQ I+ N DP + L +
Sbjct: 730 FSQGKQMLNIIEKCIRNC-----GITYLRMDGETPIDQRQPMIDKFNSDPD--IHVFLMT 782
Query: 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKL 560
T+ G NL GA R+++ D WNP + QA RA+RLGQ + V +Y L+T T+E
Sbjct: 783 TRTGGLGTNLTGADRIIIFDPDWNPSTDLQARERAWRLGQNKPVKIYRLMTEGTIEEKIY 842
Query: 561 RRQARKVWWSNMVF 574
RQ K + +N V
Sbjct: 843 HRQIFKQFMTNKVL 856
>gi|261188034|ref|XP_002620434.1| DNA repair and recombination protein RAD26 [Ajellomyces
dermatitidis SLH14081]
gi|239593445|gb|EEQ76026.1| DNA repair and recombination protein RAD26 [Ajellomyces
dermatitidis SLH14081]
Length = 1260
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 142/545 (26%), Positives = 234/545 (42%), Gaps = 76/545 (13%)
Query: 62 VPRDVRKKMFPHQREGFEFIW---KNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
VP D+ +F +Q+ G +++W + GGI DE+ G GKT
Sbjct: 420 VPGDIYPYLFDYQKTGVQWLWELYQQKVGGIIGDEM------------------GLGKTI 461
Query: 119 LTLVFLQAYMKLHPRCRPVII-APRSMLLTWEEEFKKWGIDIPF-YNLNKPELSGKENNG 176
+ FL +PVI+ P +++ W EF +W PF ++ SG N
Sbjct: 462 QVIAFLAGLHHSRILTKPVIVVCPPTVMKQWVNEFHRWWA--PFRVSILHTSGSGMVNLR 519
Query: 177 AVALMDNRKRGR-----GKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLD 231
+ D R + GL + K + ++ +L + L +L+
Sbjct: 520 RESYADPRLESQLWEPDQPRGLTKEQKA-AKRILKRVLEEGHVLVTTYSGLQTYCSLLIP 578
Query: 232 LP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-RQEF 289
+ G + DEGH RN DT + ++T R+ILSGTP QN+ EL + V
Sbjct: 579 VDWGCAILDEGHKIRNPDTAITIHCKELRTAHRLILSGTPMQNSLTELWSLFDFVFPMRL 638
Query: 290 GEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTV 345
G ++ + I + +A+ + + +CA + LK+ I+P++
Sbjct: 639 GTLVNFRNQFEFPIRQGGYANASNLQVQTAAKCA--------ETLKDAISPYLLQRFKID 690
Query: 346 LQESLPGLRHSVVILQPDEFQKRLCKAVEG-------VKSFVELNYCVSLLSV---HPSL 395
+ LP V+ + + Q+ +A G ++ E Y + +L HP L
Sbjct: 691 VAADLPKKSEQVLFCKLTKIQRSAYEAFLGSNEMSSILRGRREALYGIDMLRKICNHPDL 750
Query: 396 LPQQFFE---SFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLT 450
+ S++ SA ++G K + + LLEL T K L+F+Q+
Sbjct: 751 PEHKTLSKKSSYNYGSAS--------KSG-KMQIVKSLLELWRDTGHKTLLFAQH----- 796
Query: 451 LIMEQLRHRF-NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509
IM + RF G + MDG +K RQS ++ N+ + + L +TK G+N
Sbjct: 797 RIMLDILERFIKSLSGFKYQRMDGNTPIKLRQSMVDEFNN-NPDIHVFLLTTKVGGLGVN 855
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
L GA RV++ D WNP + QA R++RLGQKR V +Y L+T+ T+E RQ K +
Sbjct: 856 LTGADRVIIYDPDWNPSTDVQARERSWRLGQKREVTIYRLMTAGTIEEKIYHRQIFKQFL 915
Query: 570 SNMVF 574
+N +
Sbjct: 916 TNKIL 920
>gi|392597559|gb|EIW86881.1| hypothetical protein CONPUDRAFT_161515 [Coniophora puteana RWD-64-598
SS2]
Length = 1940
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 131/554 (23%), Positives = 234/554 (42%), Gaps = 108/554 (19%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM 128
K+ P Q EG+ ++ N EL+ CI++ G GKT + FL +
Sbjct: 875 KLMPFQIEGYNWLCNNWW------ELQ---------PCILADEMGLGKTVQIVTFLGTII 919
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+++ P S + W EF +W +PFY E +E
Sbjct: 920 GKWHASPALVVVPNSTITNWVREFSRWAPHLRVVPFYG----EAKSRE------------ 963
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRL----FEKLVSGDELSGILLDLP--GLFVFD 239
+I +++ + G Y + +E L + + + + + P V D
Sbjct: 964 -------IILKYEMFHDTVPKGATKAKYHVLVTTYETLTNPRDFTTVFKNTPRWECLVVD 1016
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS 299
EG ++D + +FK L+ + T RII++GTP NN +EL N ++ + E L+ + +
Sbjct: 1017 EGQRLKSDASLLFKKLNELNTIHRIIMTGTPLNNNIRELFNLMNFLDPENWNNLKALEQE 1076
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP-FVNVHKGTVLQESLPGLRHSVV 358
++ ++E+++EL K+ P F+ K VLQ LP +V
Sbjct: 1077 YEDL-------------------NEERVRELHTKLRPYFLRRIKSEVLQ--LPPKNEVIV 1115
Query: 359 ILQPDEFQK---------------RLCKAVEGVKS-----------FVELNYCVSLLSVH 392
+ QK L +A G KS ++L C+ H
Sbjct: 1116 PVSMAPLQKEIYRSVLSQNLTILKHLSQASLGGKSNARTKTNMNNILMQLRKCLQ----H 1171
Query: 393 PSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLI 452
P L+ + E ++ + +D A ++ +L+ + +VL+FSQ++ L +I
Sbjct: 1172 PYLVSEDL-EPRNLSPIEAHEKLIDASAKLRLLKMLLPKLKARGHRVLLFSQFVMALDII 1230
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
+ L+ EG + L +DG Q RQ ++ N P S I + ST+A GINL
Sbjct: 1231 EDFLQG-----EGYKFLRLDGNQKQADRQKGMDEFNKPGSDIFIYMLSTRAGGVGINLFT 1285
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNM 572
A V++ D +NP + QAI+R++R GQ++ V+ L+ ++ E ++ +K+ ++
Sbjct: 1286 ADTVIIFDPDFNPHQDLQAIARSHRYGQQKTCLVFKLMVKQSAEERIMQNGKKKLVLDHL 1345
Query: 573 VFPSSD---GGGND 583
+ D GG+D
Sbjct: 1346 IVQKMDDEENGGDD 1359
>gi|190345413|gb|EDK37294.2| hypothetical protein PGUG_01392 [Meyerozyma guilliermondii ATCC
6260]
Length = 888
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 142/523 (27%), Positives = 238/523 (45%), Gaps = 75/523 (14%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ+E F+ + + G + G G +++ G GKT T+ + ++ +
Sbjct: 265 PHQKEAVAFLHECVTG----------QRSYQGKGALLADEMGLGKTLSTIALIWKLVRRN 314
Query: 132 PR----CRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
C V I+ P +++ W EFKKW IDI L ++GK+ A D +
Sbjct: 315 SDGVQVCNKVLIVCPVTLIANWNREFKKW-IDI--NRLGVLSINGKQG-AAADKQDIKNF 370
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEK-LVSGDELSGILLDLPGLFVFDEGHTPR 245
G+ +V Y L I+G +EK L ELS I DL V DEGH +
Sbjct: 371 GKNRV----YNVL--------IMG-----YEKVLTCASELSEIKFDL---LVCDEGHRLK 410
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG-REIS 304
+ + K L + ++I+L+GTP QN+ E + + + +K R I
Sbjct: 411 SSTNKVLKVLKHLDVEKKIVLTGTPIQNDLVEFFTIVDFINPGILGSFSSFQKDYIRHIL 470
Query: 305 KAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNV----HKGTVLQESLPGLRHSVVIL 360
+++ + C N ++ L K+ N +L L ++
Sbjct: 471 RSRDVN-------CTNKEIIDRGDLLSSKLIALTNEFTLRRTSDILSSFLTTKTDVILFC 523
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVS------LLSV------HPSLL-PQQFFESFDVD 407
+P Q L + ++ K+F + +Y S L+++ PSLL P+ E ++
Sbjct: 524 KPTTLQLSLFEDIKRSKTF-KASYSGSRGGILGLITLFKKICNSPSLLAPEGKVEESELS 582
Query: 408 SAKLA-RLKLDPE-AGIKTRFLLILLELST-NEKVLVFSQYIEPLTLIMEQLRHRFNWRE 464
+ ++L+ + +G + +LLE+ EKV++ S Y + L L +EQ ++ N +
Sbjct: 583 GSDFGLNVELNNKTSGKLLVLIPLLLEIQRLGEKVVLVSNYTQTLKL-LEQSVNKLNMKS 641
Query: 465 GQEVLYMDGKQDVKKRQSSINVLNDPSSQAR-IMLASTKACCEGINLVGASRVVLLDVVW 523
L +DG K+R +N N S+++ I L S KA G+NLVGASR++L D W
Sbjct: 642 ----LRLDGTTANKERDKLVNQFNKSSAESTMIFLLSAKAGGVGLNLVGASRLILFDNDW 697
Query: 524 NPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
NP V+ QA++R +R GQKR V +Y L+T+ ++ +RQ K
Sbjct: 698 NPSVDLQAMARIHRDGQKRPVFIYRLLTTGCIDEKIFQRQLMK 740
>gi|213402947|ref|XP_002172246.1| ATP-dependent DNA helicase Rdh54 [Schizosaccharomyces japonicus
yFS275]
gi|212000293|gb|EEB05953.1| ATP-dependent DNA helicase Rdh54 [Schizosaccharomyces japonicus
yFS275]
Length = 749
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 150/578 (25%), Positives = 247/578 (42%), Gaps = 88/578 (15%)
Query: 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLV 122
PR + K + PHQ+EG F++ + S G I++ G GKT T+
Sbjct: 128 PR-LAKILQPHQKEGVSFLYNCLM----------SIGRHNSYGAILADEMGLGKTLQTIT 176
Query: 123 FLQAYMKLHPRC-------RPVIIAPRSMLLTWEEEFKKW-GIDIPFYNLNKPELSGKEN 174
L +K +P + +I++P ++L W+ EF KW G + + K + KE
Sbjct: 177 VLWTLLKQNPIANAAPPLKKIMIVSPVTLLQNWKNEFIKWLGTERIHVMIAKSTVEFKEF 236
Query: 175 NGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG 234
G V+ V L+ Y K+ S+ I D
Sbjct: 237 IGNVSY---------SVVLVGYEKVRSFLQ---------------------DNIDCDKID 266
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVL- 293
L V DEGH ++ ++ AL ++KT+RR++L+GTP QN+ E ++ + VL
Sbjct: 267 LVVCDEGHRLKSMNSQTGIALQKLKTKRRLLLTGTPIQNDLMEFYAMVNFI---MPGVLG 323
Query: 294 -RTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPG 352
+T +S E+ + + +S + +L+ L + FV K VL E+LP
Sbjct: 324 SQTSFRSQYELPILRSRLVNASTKNVL--LGNARLERLARYASTFVLRRKIDVLSETLPP 381
Query: 353 LRHSVVILQPDEFQKRLC----------KAVEGVKSFVELNYCVSLLSVHPSLLPQQFFE 402
+ L+P Q+ L + +E K+F L+ L + S Q E
Sbjct: 382 RTDVTIFLKPSRSQELLYEEHLDKFWKDRTLENEKTF-PLSTLTELNCLCNSTRLIQHQE 440
Query: 403 SFDVDSAKLARLKLDPEAGIKTRFL-LILLELSTNE-KVLVFSQYIEPLTLIMEQLRHRF 460
+ D+ L + K FL +LLE ++ K ++ SQ+ E L LI L+H
Sbjct: 441 NTDLSLNDLI------ASSSKFEFLKSLLLEFKNSQLKCVIVSQFTETLNLIEILLKHLL 494
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA-RIMLASTKACCEGINLVGASRVVLL 519
+DG RQS ++ N + + + L S K+ G+NLVGA+R++L
Sbjct: 495 ITH-----CRLDGSTPTNTRQSLVDQFNCSTYEHLSVFLLSNKSGGAGLNLVGANRLILF 549
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDG 579
+ WNP + QA+ R YR GQ R V +Y L+++ L+ RQ K SN S
Sbjct: 550 EPSWNPAYDLQALGRIYRYGQNRSVLIYTLLSTGMLDEQIYIRQHTKTGLSNAFMDS--- 606
Query: 580 GGNDQTTASEPLEDKILEEMAQLYNNPSETLINAIIPQ 617
D +T + K ++ + Y+ P L++ +I +
Sbjct: 607 ---DTSTLKYKFQMKDMKNLFS-YHKPKTCLMHELITK 640
>gi|374711316|ref|ZP_09715750.1| SNF2 helicase associated domain-containing protein
[Sporolactobacillus inulinus CASD]
Length = 1086
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 129/464 (27%), Positives = 200/464 (43%), Gaps = 79/464 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
G G I++ G GKT T+ FL + + +P +I++P S++ W+ E K+
Sbjct: 653 GLGGILADEMGLGKTIQTIAFLLSEKEKDSTTQPALIVSPASLIYNWKNELAKFA----- 707
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
P+L +G V ++ + K L W L +E
Sbjct: 708 -----PDLHAVVASGTVQEREDLYQQEAKPDL--------WITSYQTLRQDIGTYE---- 750
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
E S ++L DE T +N +T K++ IK R R LSGTP +N+ EL +
Sbjct: 751 NQEFSTLIL--------DEAQTIKNFNTKTAKSVREIKARNRFALSGTPIENSIDELWSI 802
Query: 282 LSLVRQEFGEVLRTVRKSGRE-ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNV 340
+ F L +K +E I + L+ I + + L EL +KI V
Sbjct: 803 FQTILPGFFPKLSDFKKMDQEKIVRMIRPFLLRRIKK-------DVLSELPDKIE---TV 852
Query: 341 HKGTVLQES----LPGL----RHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVH 392
H + +E L L + + L+ + FQK K + G+ ++ C H
Sbjct: 853 HTSELTKEQKELYLAYLQKIQKETKDSLENEGFQKSRMKILAGLTRLRQI--C-----CH 905
Query: 393 PSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLI 452
P+L F + + S KL +L LI L + ++L+FSQ+ L +I
Sbjct: 906 PAL----FVDDYQGASGKLQQL-----------LELISDALESGRRILIFSQFTSMLAII 950
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
R F +G Y+DG+ K R ++ N + + L S KA G+NL G
Sbjct: 951 ----RQAFT-EQGVSFFYLDGQTRAKDRVEMVDQFN--QGEKNVFLISLKAGNTGLNLTG 1003
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
A V+L D+ WNP VE QA+ RA+R+GQ+ VV V LIT T+E
Sbjct: 1004 ADTVILYDLWWNPAVEDQAVGRAHRIGQRNVVQVVRLITQGTIE 1047
>gi|448115219|ref|XP_004202771.1| Piso0_001627 [Millerozyma farinosa CBS 7064]
gi|359383639|emb|CCE79555.1| Piso0_001627 [Millerozyma farinosa CBS 7064]
Length = 1375
Score = 125 bits (315), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 140/554 (25%), Positives = 241/554 (43%), Gaps = 88/554 (15%)
Query: 71 FPH-QREGFEFIWKN---IAGGIDLDELKNSTSTG----------GGNGCIISHAPGTGK 116
+PH QR FE + K I G EL++ TG NG I++ G GK
Sbjct: 319 YPHSQRPRFEKLVKQPLFIKNG----ELRDFQLTGLNWMAFLWSRNENG-ILADEMGLGK 373
Query: 117 TGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENN 175
T T+ FL + + P +++ P S + +W+E F+KW D+ N
Sbjct: 374 TVQTVSFLSWLIYARRQNGPHLVVVPLSTITSWQETFEKWAPDV---------------N 418
Query: 176 GAVALMDNRKRGRGKVGLIRYVKLY-SWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG 234
L ++ R +R + Y + K+ IL +Y L EL I
Sbjct: 419 CVYYLGNSAARK-----TVRDYEFYQNKKIKFNILLTTYEYV--LKDRSELGSIKWQF-- 469
Query: 235 LFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294
DE H +N+++ ++++L K R++++GTP QNN +EL + + +
Sbjct: 470 -LAVDEAHRLKNEESSLYESLKSFKVGNRLLITGTPLQNNIKELNALCNFLMPGRFNI-- 526
Query: 295 TVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLR 354
G+EI N ++ +K+L++ I PF+ +++SLP
Sbjct: 527 -----GQEID-----------FETPNREQEQYIKDLQKNIQPFILRRLKKDVEKSLPSKS 570
Query: 355 HSVVILQPDEFQKRLCKAVEGVKSFVELNYC-----VSLLSVHPSLL-----PQQFFESF 404
++ ++ + Q + + K++ LN +SLL+V L P F +
Sbjct: 571 ERILRVELSDLQTEYYRNI-LTKNYSALNAGNKGSQISLLNVVSELKKASNHPYLFDGAE 629
Query: 405 DVDSAKLARLKLDP--EAGIKTRFLLILLELSTN------EKVLVFSQYIEPLTLIMEQL 456
+ AK + D I + ++LLE N +VL+FSQ + L ++ + L
Sbjct: 630 ERALAKASSTSRDNILRGIIMSSGKMVLLEQLLNRLKKEGHRVLIFSQMVRILDILGDYL 689
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
+ G + +DG +R+ SI+ N P S+ + L ST+A GINL+ A V
Sbjct: 690 SIK-----GLQFQRLDGGVPSSQRRISIDHFNAPDSKDFVFLLSTRAGGLGINLMTADTV 744
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPS 576
++ D WNP + QA++RA+R+GQK V VY ++ +T+E + L R +K+ +
Sbjct: 745 IIFDSDWNPQADLQAMARAHRIGQKNHVSVYRFVSKDTIEEEILERARKKMILEYAIISL 804
Query: 577 SDGGGNDQTTASEP 590
Q + S+P
Sbjct: 805 GITDNTSQKSKSDP 818
>gi|261209238|ref|ZP_05923630.1| Snf2 family protein [Enterococcus faecium TC 6]
gi|289565987|ref|ZP_06446425.1| Snf2 family protein [Enterococcus faecium D344SRF]
gi|294616209|ref|ZP_06696006.1| Snf2 family protein [Enterococcus faecium E1636]
gi|430850333|ref|ZP_19468095.1| Snf2 family protein [Enterococcus faecium E1185]
gi|260076784|gb|EEW64519.1| Snf2 family protein [Enterococcus faecium TC 6]
gi|289162185|gb|EFD10047.1| Snf2 family protein [Enterococcus faecium D344SRF]
gi|291590964|gb|EFF22676.1| Snf2 family protein [Enterococcus faecium E1636]
gi|430535671|gb|ELA76070.1| Snf2 family protein [Enterococcus faecium E1185]
Length = 1064
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 126/515 (24%), Positives = 222/515 (43%), Gaps = 92/515 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ + M +Q++GF W + G G I++ G GKT T+
Sbjct: 604 LPKGLNATMRDYQKQGFR--WLKMLGHYQF-------------GGILADEMGLGKTLQTI 648
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
FL + + +I+AP S++ W+ E +K+ P LS + ++
Sbjct: 649 AFLLSEKEERKSFSALIVAPASLIYNWQAEVRKFA----------PSLS-------IQVI 691
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
+ K+ R ++ T I SY + ++ + I + DE
Sbjct: 692 NGNKKEREEL----------LAKDTDIRVTSYASLRQDLANYQSQKI-----DYLILDEA 736
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301
+N T +AL + +R LSGTP +NN +EL + + + F + R
Sbjct: 737 QMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLFATIMPGFF----PTKTKFR 792
Query: 302 EISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAPFVNVHKGTVLQESLPGLRH 355
E++ + A +I R R D++ LK+L EK + + + TV L +R
Sbjct: 793 ELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYSALTEEQKTVYLAYLRQMRE 848
Query: 356 SVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLK 415
++ + + F+K + G+ ++ C P+ F E + S KL ++K
Sbjct: 849 EIISMDSEAFKKNRIGILAGLTRLRQI--CCD---------PRLFIEDYQGGSGKLEQVK 897
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
L++ +VL+FSQ+ LT++ E+L G Y+ G
Sbjct: 898 D-----------LLVAAKENKRRVLLFSQFTGMLTILQEELAEL-----GISTFYLRGST 941
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
+ R S ++ N + + + L S KA G+NL GA V+L D+ WNP +E QA RA
Sbjct: 942 KPQDRLSMVDAFN--TGEKDVFLISLKAGGTGLNLTGADTVILYDLWWNPAIEEQAAGRA 999
Query: 536 YRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 1000 HRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1034
>gi|443721916|gb|ELU11024.1| hypothetical protein CAPTEDRAFT_167753 [Capitella teleta]
Length = 1643
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 129/499 (25%), Positives = 219/499 (43%), Gaps = 79/499 (15%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFY 162
N I++ G GKT + F+ + M LH P +++ P S + +W++EF W DI
Sbjct: 397 NSVILADEMGLGKTIQVISFINSLMNLHQLYGPFLVVVPLSTIASWQKEFALWAEDI--- 453
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLSYRLFEKL 219
N V L D R +IR + L + ++ +L +Y + K
Sbjct: 454 ------------NVVVYLGDVSSRN-----MIREHEWCHLGNKRLKFNVLLTTYEILLKD 496
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
S L G+ G+ DE H +NDD+ ++K+L T R++++GTP QN+ +EL
Sbjct: 497 KSF--LGGVSWSFLGV---DEAHRLKNDDSLLYKSLISFNTNMRMLITGTPLQNSLKELW 551
Query: 280 NTLSLVR-QEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
+ L + +F + E + KH S D + L +++ PF+
Sbjct: 552 SLLHFIMPSKFHKW---------EDFEHKHKSA-----------DKTGFRNLHQELEPFL 591
Query: 339 NVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV-------------EGVKSFVELNYC 385
+++SLP ++ ++ QK+ K + V SFV +
Sbjct: 592 LRRVKKDVEKSLPAKTEQILRVEMSNIQKQYYKWILTKNYKALSKGGRSNVSSFVNIVME 651
Query: 386 VSLLSVHPSLLPQQFFESFDVDSAKLARLKLDP-EAGIKTRFLLILLELS-TNEKVLVFS 443
+ H L+ + D + A DP E +K +L+ L + +VL+FS
Sbjct: 652 LKKCCNHGHLVR-------NPDLSDPAFKGKDPLEVIVKILLDKLLMRLKESGHRVLIFS 704
Query: 444 QYIEPLTLIMEQLR-HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTK 502
Q + L ++ E L RF ++ +DG + R+ ++ N S L ST+
Sbjct: 705 QMVRLLDILAEYLTMRRFQFQR------LDGSIKGEVRKQAMEHFNAEGSDDFCFLLSTR 758
Query: 503 ACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRR 562
A G+NL A V++ D WNP + QA +RA+R+GQK+ V VY L+T ++E D + R
Sbjct: 759 AGGLGVNLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKQVSVYRLVTKGSVEEDIVER 818
Query: 563 QARKVWWSNMVFPSSDGGG 581
+K+ ++V D G
Sbjct: 819 AKKKMVLDHLVIQRMDTTG 837
>gi|269969347|sp|B6ZLK2.1|CHD1_CHICK RecName: Full=Chromodomain-helicase-DNA-binding protein 1;
Short=CHD-1; AltName: Full=ATP-dependent helicase CHD1
gi|218117883|dbj|BAH03306.1| chromodomain-helicase-DNA-binding protein 1 [Gallus gallus]
Length = 1719
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 132/501 (26%), Positives = 216/501 (43%), Gaps = 77/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W
Sbjct: 495 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWA----- 549
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
P++ N V L D R + ++ + ++ IL +Y + K S
Sbjct: 550 -----PQM-----NAVVYLGD--ITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKS 597
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+ +EL +
Sbjct: 598 F--LGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSL 652
Query: 282 LSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
L + E F E GRE A L +++ PF+
Sbjct: 653 LHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHKELEPFL 690
Query: 339 NVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-----FVE 381
+++SLP LR + LQ ++ K L K +G S +E
Sbjct: 691 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 750
Query: 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLV 441
L C + H L+ F L L + + L++ +VL+
Sbjct: 751 LKKCCN----HCYLIKPPDDNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRERGNRVLI 805
Query: 442 FSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500
FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+ L S
Sbjct: 806 FSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSEDFCFLLS 859
Query: 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKL 560
T+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T ++E D L
Sbjct: 860 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL 919
Query: 561 RRQARKVWWSNMVFPSSDGGG 581
R +K+ ++V D G
Sbjct: 920 ERAKKKMVLDHLVIQRMDTTG 940
>gi|256072692|ref|XP_002572668.1| chromodomain helicase DNA binding protein [Schistosoma mansoni]
Length = 1958
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 136/530 (25%), Positives = 229/530 (43%), Gaps = 106/530 (20%)
Query: 67 RKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA 126
R+ + P+Q EG ++W I+ I++ G GKT + L +
Sbjct: 490 RRVLHPYQIEGARWLWHAYHNNIN---------------AILADEMGLGKTVQVIALLYS 534
Query: 127 YMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRK 185
K P +I+ P S L W+ EF W D FY + + K
Sbjct: 535 LWKEENDYGPFIIMTPLSTLQNWDREFSIWAPD--FY---------------IVVYSGDK 577
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLF-----VFDE 240
+ R ++R + + + GI F L++ EL+ I F V DE
Sbjct: 578 QVRA---MLREYE-FRLRNAGGIPA-----FHVLITSHELACIDRSFLKSFDWSVLVVDE 628
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N + F+ S+ T+ +I+L+GTP QN+ +EL + L+ V + R + +
Sbjct: 629 AHRLKNKQSRFFRYTSQYHTKFKILLTGTPLQNSLEELFHLLNFVEPKKFTDFRALSEQW 688
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
E+ K +++K L + + + + + LP VV +
Sbjct: 689 AEMPKT------------------DRIKHLHDLLNRHLLRRLKCDVIQDLPKKTEIVVPV 730
Query: 361 QPDEFQKRLCKAV-----EGVKSFVELNYCVSLLSV--HPSLLPQQFFESFDVDSAKLAR 413
Q+RL K + E ++ +N V L V HP L+ + + R
Sbjct: 731 DMTLLQRRLYKYILTSNYEELRCGNLMNSIVHLQKVCNHPYLM--------QIGDSIAPR 782
Query: 414 LKL--------DPEAGIK-TRFLLILLEL-----STNEKVLVFSQYIEPLTL---IMEQL 456
L L +P+A ++ + L++L+EL + +VL+FS++ L L +M
Sbjct: 783 LNLNDETNGPYEPKALVQVSSKLVVLMELLRGLFVDDHRVLIFSRFTMMLDLLEQVMINA 842
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
R+++ + +DG+ RQ +I+ N P S+ I L ST+A EGINL A V
Sbjct: 843 RYKY--------VRIDGRVRGPLRQVTIDRFNAPDSEYFIFLLSTRAGGEGINLASADTV 894
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
VL D WNP + QA+SRA+R+GQ + V +Y IT ++E +K+ + AR+
Sbjct: 895 VLYDSDWNPQWDLQALSRAHRIGQSKHVVIYRFITRHSIE-EKISQVARR 943
>gi|222619629|gb|EEE55761.1| hypothetical protein OsJ_04298 [Oryza sativa Japonica Group]
Length = 1129
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 141/491 (28%), Positives = 212/491 (43%), Gaps = 77/491 (15%)
Query: 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLN 165
I++ G GKT + FL +K P +I+AP+S+LL WE+EF +W D LN
Sbjct: 556 ILADEMGLGKTVQVVCFLYHIIKESLTASPALILAPKSILLQWEKEFCQWASD-----LN 610
Query: 166 KPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225
G D+RK I+ ++YS LF+ LV+ E
Sbjct: 611 VIVYQGDR--------DSRK-------CIQVHEMYS--------SDGKPLFDALVTSYEF 647
Query: 226 SGILLDLPGLF-----VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELEN 280
I + F V DE H + D + L R + R++L+GTP QNN EL +
Sbjct: 648 VQIDKAVLQKFKWSTIVIDEAHRMKKLDCNLAACLKRYCSEFRLLLTGTPLQNNIMELFS 707
Query: 281 TLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP-FVN 339
L + + E S K L S I + DEK+ + + P +
Sbjct: 708 LLHYIDPD-------------EFSDPKADGLFSPIESGRDLTMDEKVARIHNILKPRMLR 754
Query: 340 VHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSL---- 395
K VL +S+P + V + Q+ L + +E NY ++ L
Sbjct: 755 RMKSDVLTDSMPVKKWVEVPCALADSQREL------YINILERNYSKLNSAIRNGLEVGQ 808
Query: 396 -LPQQFFESFDVDSAKLARL-KLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIM 453
+ F S S KL L KL P +K R +VL+FSQ L ++
Sbjct: 809 QATEDVFLSLIASSGKLQLLHKLLPR--LKER----------GNRVLIFSQMTRMLDILE 856
Query: 454 EQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
+ F G + +DG+ + RQ SI + S+ I L ST+A G++L GA
Sbjct: 857 D-----FLCSLGYKYARIDGQTSLSARQESIEEYKNIDSETFIFLMSTRAGGMGVDLPGA 911
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
RV++ D +NPF++ QA SRA+R+GQ R V VY LIT ++E L++ +K+ NM+
Sbjct: 912 DRVIIYDPDFNPFMDLQAQSRAHRIGQTRPVVVYQLITKCSVEEKILQKSKQKLAIENML 971
Query: 574 FPSSDGGGNDQ 584
SS D+
Sbjct: 972 MNSSKKPSADE 982
>gi|170085497|ref|XP_001873972.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
gi|164651524|gb|EDR15764.1| SNF2 family DNA-dependent ATPase [Laccaria bicolor S238N-H82]
Length = 1754
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 144/569 (25%), Positives = 239/569 (42%), Gaps = 122/569 (21%)
Query: 64 RDVRKKMFPHQREGFEFI---WKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT 120
+D R K+ P Q +GF ++ W N+ CI++ G GKT
Sbjct: 855 QDPRLKLMPFQVDGFNWLCNNWWNL------------------QHCILADDMGLGKTVQI 896
Query: 121 LVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
FL + + +++ P S + W E ++W P+L V
Sbjct: 897 ATFLGSIIGRWNALPALVVVPNSTITNWVRELERWA----------PKLR-------VVP 939
Query: 181 MDNRKRGRGKVGLIR-YVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP--GLFV 237
K+ R + Y K++S + ++ L++ + + + P + V
Sbjct: 940 FHGDKKARDVIKEFELYHKVFSKHNTNAKFHVLVTTYDALINAKDFTSVFKHQPRWEILV 999
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DEG ++D + +FK L+ + T RIIL+GTP NN +EL N ++ + L ++
Sbjct: 1000 VDEGQRLKSDSSLLFKKLNELNTIHRIILTGTPLNNNMRELFNLMNFLDPVEWHDLESLE 1059
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP-FVNVHKGTVLQESLPGLRHS 356
K +H L D++ +K+L ++ P F+ K VLQ LP ++
Sbjct: 1060 K--------QHEVL-----------DEDLVKQLHNRLRPYFLRRIKSEVLQ--LPP-KNE 1097
Query: 357 VVI------LQPDEFQKRLCKAVEGVKSFVE-----------LNYCVSLLS---VHPSLL 396
V+I LQ + ++ L +E +K + LN + L HP L
Sbjct: 1098 VIIPVSMAPLQKEVYRSILSHNLELLKGLTQPKFGGPTTKGRLNNILMHLRKCLQHPYLY 1157
Query: 397 ----------PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQ 444
PQ+ E SAKL RFL LL + +VL+FSQ
Sbjct: 1158 AEDIEPRGLPPQETHEKLIDGSAKL-------------RFLKALLPKLKARGHRVLLFSQ 1204
Query: 445 YIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKAC 504
++ L +I + L+ EG + L +DG +RQ ++ N P S + L +T+A
Sbjct: 1205 FVIALNVIEDFLQG-----EGYKFLRLDGDTKGSERQKGMDEFNRPGSDYFVYLLTTRAG 1259
Query: 505 CEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQA 564
GINL A V++ D +NP QAI+RAYR GQK+ V+ L+ ++ E ++
Sbjct: 1260 GVGINLYTADTVIIFDPDFNP---HQAIARAYRYGQKKTCLVFKLMVKDSAEERIMQIGK 1316
Query: 565 RKVWWSNMVFPSSD-----GGGNDQTTAS 588
+K+ +++ D GGGN Q+ S
Sbjct: 1317 KKLVLDHLIVQKMDDDEEGGGGNVQSILS 1345
>gi|356538178|ref|XP_003537581.1| PREDICTED: ATP-dependent DNA helicase DDM1-like [Glycine max]
Length = 757
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 146/569 (25%), Positives = 237/569 (41%), Gaps = 138/569 (24%)
Query: 60 ELVPRDVRKKMFPHQREGFEFI---WKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGK 116
EL+P K+ +Q +G +++ W+N GI D++ G GK
Sbjct: 176 ELMPLLTGGKLKTYQLKGVKWLISLWQNGLNGILADQM------------------GLGK 217
Query: 117 TGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIP--FYNLNK------- 166
T T+ FL +++K P +IIAP S L W E ++ +P Y+ +K
Sbjct: 218 TIQTIGFL-SHLKAKGLDGPYMIIAPLSTLSNWVNEISRFAPSLPAVIYHGDKKQRDEIR 276
Query: 167 ----------PELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLF 216
PE + +AL D +K Y + Y+WK
Sbjct: 277 RKHMPTRTIGPEFPIVITSYEIALNDAKK----------YFRSYNWKY------------ 314
Query: 217 EKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQ 276
V DEGH +N + KAL I +++L+GTP QNN
Sbjct: 315 -------------------IVVDEGHRLKNSQCKLVKALKFINVENKLLLTGTPLQNNLA 355
Query: 277 ELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKE------- 329
EL + L+ + + L + S + G+C N E+L+E
Sbjct: 356 ELWSLLNFILPDIFASLE------------EFESWFNLSGKCNNEATKEELEEKRRSQVV 403
Query: 330 --LKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV----------EGVK 377
L + PF+ + ++ LP + ++ E QK L + E +
Sbjct: 404 AKLHAILRPFLLRRMKSDVEIMLPRKKEIIIYANMTEHQKNLQDHLVNKTLGNYLKENMS 463
Query: 378 SFVEL------NYCVSLLSV--HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLI 429
S + + N + L V HP LL F +S+ L+ G +F L+
Sbjct: 464 SGLSVPAIMIRNLAIQLRKVCNHPDLLESAFDDSY-------LYPPLEEIVGQCGKFHLL 516
Query: 430 --LLE--LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSIN 485
LL+ S N KVL+FSQ+ T +++ + + F+ +G V +DG +++R+ I
Sbjct: 517 DRLLQRLFSRNHKVLIFSQW----TKVLDIMDYYFS-EKGFAVCRIDGSVKLEERKQQIQ 571
Query: 486 VLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545
ND +S R+ L ST+A GINL A +L D WNP ++ QA+ R +R+GQ + VH
Sbjct: 572 DFNDVNSNCRVFLLSTRAGGLGINLTVADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVH 631
Query: 546 VYHLITSETLEWDKLRRQARKVWWSNMVF 574
VY L T++++E L+R K+ ++V
Sbjct: 632 VYRLSTAQSIEGRMLKRAFSKLKLEHVVI 660
>gi|386769008|ref|NP_001245851.1| Chromodomain-helicase-DNA-binding protein 1, isoform B [Drosophila
melanogaster]
gi|383291295|gb|AFH03528.1| Chromodomain-helicase-DNA-binding protein 1, isoform B [Drosophila
melanogaster]
Length = 1900
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 124/502 (24%), Positives = 216/502 (43%), Gaps = 80/502 (15%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVI-IAPRSMLLTWEEEFKKWGIDIPFY 162
N I++ G GKT T+ FL + K+H P + + P S + W+ EF W D+
Sbjct: 564 NSVILADEMGLGKTIQTICFLYSLFKIHHLYGPFLCVVPLSTMTAWQREFDLWAPDM--- 620
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGI---LGLSYRLFEKL 219
N L D + R ++ Y W+ + +E +
Sbjct: 621 ------------NVVTYLGDIKSR--------ELIQQYEWQFESSKRLKFNCILTTYEIV 660
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ + G L L V DE H +NDD+ ++K+L T R++++GTP QN+ +EL
Sbjct: 661 LKDKQFLGTL-QWAALLV-DEAHRLKNDDSLLYKSLKEFDTNHRLLITGTPLQNSLKELW 718
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVN 339
L + + + E + +H + +D+ L +++ P++
Sbjct: 719 ALLHFIMPDKFDTW--------ENFEVQHGNA-----------EDKGYTRLHQQLEPYIL 759
Query: 340 VHKGTVLQESLPG-----LRHSVVILQPDEFQKRLCKAVEGVKS------------FVEL 382
+++SLP LR + LQ ++ L K + ++ +EL
Sbjct: 760 RRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNFDALRKGKRGSTSTFLNIVIEL 819
Query: 383 NYCVSLLSVHPSLLPQQFFE--SFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVL 440
C + H +L+ FE D A LK + + + L L E T +VL
Sbjct: 820 KKCCN----HAALIRPSEFELMGLQQDEALQTLLKGSGKLVLLDKLLCRLKE--TGHRVL 873
Query: 441 VFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
+FSQ + L ++ + L+ R F ++ +DG + R+ +++ N SQ L
Sbjct: 874 IFSQMVRMLDVLADYLQKRHFPFQR------LDGSIKGEMRRQALDHFNAEGSQDFCFLL 927
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
ST+A GINL A V++ D WNP + QA +RA+R+GQK V++Y L+T+ ++E
Sbjct: 928 STRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQI 987
Query: 560 LRRQARKVWWSNMVFPSSDGGG 581
+ R +K+ ++V D G
Sbjct: 988 VERAKQKMVLDHLVIQRMDTTG 1009
>gi|118343651|ref|NP_001071646.1| chromo-helicase DNA-binding protein [Taeniopygia guttata]
gi|28975391|gb|AAO61781.1| chromo-helicase DNA-binding protein [Taeniopygia guttata]
gi|28975393|gb|AAO61782.1| chromo-helicase DNA-binding protein [Taeniopygia guttata]
Length = 1786
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 131/502 (26%), Positives = 216/502 (43%), Gaps = 79/502 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W
Sbjct: 481 GNSCILADEMGLGKTIQTISFLNHLFHEHQLYGPFLLVVPLSTLTSWQREIQTWA----- 535
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
P++ N V L D R + ++ + ++ IL +Y + K S
Sbjct: 536 -----PQM-----NAVVYLGD--ITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKS 583
Query: 222 GDELSGILLDLPGLFV-FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELEN 280
L L +F+ DE H +NDD+ ++K L K+ R++++GTP QN+ ++L +
Sbjct: 584 ------FLGGLNWVFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKKLWS 637
Query: 281 TLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPF 337
L + E F E GRE A L +++ PF
Sbjct: 638 LLHFIMPEKFSSWEDFEEEHGKGREFGYA----------------------SLHKELEPF 675
Query: 338 VNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-----FV 380
+ +++SLP LR + LQ ++ K L K +G S +
Sbjct: 676 LLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMM 735
Query: 381 ELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVL 440
EL C + H L+ F L L + + L++ +VL
Sbjct: 736 ELKKCCN----HCYLIKPPDDNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRECGNRVL 790
Query: 441 VFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+ L
Sbjct: 791 IFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSEDFCFLL 844
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T ++E D
Sbjct: 845 STRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKASVEEDI 904
Query: 560 LRRQARKVWWSNMVFPSSDGGG 581
L R +K+ ++V D G
Sbjct: 905 LERAKKKMVLDHLVIQRMDTTG 926
>gi|442625623|ref|NP_001259975.1| Chromodomain-helicase-DNA-binding protein 1, isoform C [Drosophila
melanogaster]
gi|440213244|gb|AGB92512.1| Chromodomain-helicase-DNA-binding protein 1, isoform C [Drosophila
melanogaster]
Length = 1881
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 123/502 (24%), Positives = 215/502 (42%), Gaps = 80/502 (15%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVI-IAPRSMLLTWEEEFKKWGIDIPFY 162
N I++ G GKT T+ FL + K+H P + + P S + W+ EF W D+
Sbjct: 547 NSVILADEMGLGKTIQTICFLYSLFKIHHLYGPFLCVVPLSTMTAWQREFDLWAPDM--- 603
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGI---LGLSYRLFEKL 219
N L D + R ++ Y W+ + +E +
Sbjct: 604 ------------NVVTYLGDIKSR--------ELIQQYEWQFESSKRLKFNCILTTYEIV 643
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ + G L L V DE H +NDD+ ++K+L T R++++GTP QN+ +EL
Sbjct: 644 LKDKQFLGTL-QWAALLV-DEAHRLKNDDSLLYKSLKEFDTNHRLLITGTPLQNSLKELW 701
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVN 339
L + + + + +H + +D+ L +++ P++
Sbjct: 702 ALLHFIMPDKFDTWENF--------EVQHGNA-----------EDKGYTRLHQQLEPYIL 742
Query: 340 VHKGTVLQESLPG-----LRHSVVILQPDEFQKRLCKAVEGVKS------------FVEL 382
+++SLP LR + LQ ++ L K + ++ +EL
Sbjct: 743 RRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNFDALRKGKRGSTSTFLNIVIEL 802
Query: 383 NYCVSLLSVHPSLLPQQFFE--SFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVL 440
C + H +L+ FE D A LK + + + L L E T +VL
Sbjct: 803 KKCCN----HAALIRPSEFELMGLQQDEALQTLLKGSGKLVLLDKLLCRLKE--TGHRVL 856
Query: 441 VFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
+FSQ + L ++ + L+ R F ++ +DG + R+ +++ N SQ L
Sbjct: 857 IFSQMVRMLDVLADYLQKRHFPFQR------LDGSIKGEMRRQALDHFNAEGSQDFCFLL 910
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
ST+A GINL A V++ D WNP + QA +RA+R+GQK V++Y L+T+ ++E
Sbjct: 911 STRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQI 970
Query: 560 LRRQARKVWWSNMVFPSSDGGG 581
+ R +K+ ++V D G
Sbjct: 971 VERAKQKMVLDHLVIQRMDTTG 992
>gi|17137266|ref|NP_477197.1| Chromodomain-helicase-DNA-binding protein 1, isoform A [Drosophila
melanogaster]
gi|75009913|sp|Q7KU24.1|CHD1_DROME RecName: Full=Chromodomain-helicase-DNA-binding protein 1;
Short=CHD-1; AltName: Full=ATP-dependent helicase Chd1
gi|7295870|gb|AAF51170.1| Chromodomain-helicase-DNA-binding protein 1, isoform A [Drosophila
melanogaster]
Length = 1883
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 124/502 (24%), Positives = 216/502 (43%), Gaps = 80/502 (15%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVI-IAPRSMLLTWEEEFKKWGIDIPFY 162
N I++ G GKT T+ FL + K+H P + + P S + W+ EF W D+
Sbjct: 547 NSVILADEMGLGKTIQTICFLYSLFKIHHLYGPFLCVVPLSTMTAWQREFDLWAPDM--- 603
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGI---LGLSYRLFEKL 219
N L D + R ++ Y W+ + +E +
Sbjct: 604 ------------NVVTYLGDIKSR--------ELIQQYEWQFESSKRLKFNCILTTYEIV 643
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ + G L L V DE H +NDD+ ++K+L T R++++GTP QN+ +EL
Sbjct: 644 LKDKQFLGTL-QWAALLV-DEAHRLKNDDSLLYKSLKEFDTNHRLLITGTPLQNSLKELW 701
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVN 339
L + + + E + +H + +D+ L +++ P++
Sbjct: 702 ALLHFIMPDKFDTW--------ENFEVQHGNA-----------EDKGYTRLHQQLEPYIL 742
Query: 340 VHKGTVLQESLPG-----LRHSVVILQPDEFQKRLCKAVEGVKS------------FVEL 382
+++SLP LR + LQ ++ L K + ++ +EL
Sbjct: 743 RRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNFDALRKGKRGSTSTFLNIVIEL 802
Query: 383 NYCVSLLSVHPSLLPQQFFE--SFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVL 440
C + H +L+ FE D A LK + + + L L E T +VL
Sbjct: 803 KKCCN----HAALIRPSEFELMGLQQDEALQTLLKGSGKLVLLDKLLCRLKE--TGHRVL 856
Query: 441 VFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
+FSQ + L ++ + L+ R F ++ +DG + R+ +++ N SQ L
Sbjct: 857 IFSQMVRMLDVLADYLQKRHFPFQR------LDGSIKGEMRRQALDHFNAEGSQDFCFLL 910
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
ST+A GINL A V++ D WNP + QA +RA+R+GQK V++Y L+T+ ++E
Sbjct: 911 STRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQI 970
Query: 560 LRRQARKVWWSNMVFPSSDGGG 581
+ R +K+ ++V D G
Sbjct: 971 VERAKQKMVLDHLVIQRMDTTG 992
>gi|170092931|ref|XP_001877687.1| DNA repair protein, SNF2 family DNA-dependent ATPase [Laccaria
bicolor S238N-H82]
gi|164647546|gb|EDR11790.1| DNA repair protein, SNF2 family DNA-dependent ATPase [Laccaria
bicolor S238N-H82]
Length = 1051
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 152/577 (26%), Positives = 238/577 (41%), Gaps = 114/577 (19%)
Query: 66 VRKKMFPHQREGF-------EFIWKNIAGGID-LDELKNSTSTGGGNGCIISHAPGTGKT 117
+ ++M PHQ+EG+ + ++ G+ L E G GCI++ G GKT
Sbjct: 350 LSRRMRPHQKEGWLTGVSSVRLYSEQLSQGVMFLYECVMGLRKHEGQGCILADEMGLGKT 409
Query: 118 GLTLVFLQAYMKLH------PRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELS 170
T+ + +K + P + V I+ P S+ W+ EF KW
Sbjct: 410 LQTIALIWTLLKQNLYGSKEPAAKKVLIVCPVSLTTNWKAEFNKW--------------L 455
Query: 171 GKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELS-GIL 229
GK+ G V ++ R V + + +L + Y ++ D LS G+
Sbjct: 456 GKDRVGVVICEKDKSR----------VNQFFYNKNQHVLVIGYERLRTVI--DTLSSGVS 503
Query: 230 LDLPGLFVFDEGH---TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR 286
+ L V DEGH + N T + KAL +T RR+ILSGTP QN+ E
Sbjct: 504 VPAIDLIVCDEGHRLKSANNKTTAILKAL---RTPRRVILSGTPIQNDLGEFHAMAEFCN 560
Query: 287 QEFGE---VLRTVRKSGREISKAKHASLIS-SIGRCANHRDDEKLKELKEKIAPFVNVHK 342
+ V R V +S S+A AS IG + + +L FV
Sbjct: 561 PGLLDDYNVFRRVYESPILKSRAPDASAKEIEIG-------ETRTAQLLSISNSFVLRRD 613
Query: 343 GTVLQESLPGLRHSVVILQPDEFQ----------KRLCKAVEG--VKSFVELNYCVSLLS 390
T+L+ LP VV + P Q RL V+ +S +N ++ +S
Sbjct: 614 ATLLKNHLPPKYEYVVFVTPTALQLSMFSKILRPDRLIDLVQSSTAESLALINI-LTKIS 672
Query: 391 VHPSLLPQQFFESFDV---DSAKLARLKLDPEAGI---KTRF--------------LLIL 430
P LL ++ D+ + R +D G+ T F LL +
Sbjct: 673 NSPILLKAAADKAKIKTSGDAPYILRTGVDEALGLLPDTTHFGDFSLSGKLIALAKLLTI 732
Query: 431 LELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDP 490
+ +T EK ++ S Y L ++ F ++G +DG+ KRQ +N N+
Sbjct: 733 IRHTTEEKCVLVSHYTSTLNIL-----EAFCQKKGYSYYRLDGQTPQVKRQEYVNAFNNV 787
Query: 491 SSQAR-IMLASTKACCEGINLVGASRVVLLDVVWNP-FVER---------------QAIS 533
S ++ I L S+KA GINL+GASR+ L+D WNP V R Q+++
Sbjct: 788 SQRSSFIFLLSSKAGGLGINLIGASRLCLIDSDWNPRLVGRRTQLTPTLISDSHDLQSMA 847
Query: 534 RAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS 570
R +R GQKR V +Y +T+ ++ +RQ K+ S
Sbjct: 848 RCHRDGQKRPVFIYRFLTTGAIDEKIYQRQVTKLGLS 884
>gi|431593378|ref|ZP_19521707.1| Snf2 family protein [Enterococcus faecium E1861]
gi|430591255|gb|ELB29293.1| Snf2 family protein [Enterococcus faecium E1861]
Length = 1064
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 133/534 (24%), Positives = 223/534 (41%), Gaps = 97/534 (18%)
Query: 45 QTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGN 104
QT H + +L P+ + KM +Q++GF W + G
Sbjct: 588 QTMVQDLIHPEEYQAQL-PKGLNAKMREYQKQGFR--WLKMLGHYQF------------- 631
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWG--IDIPFY 162
G I++ G GKT T+ FL + + +I+AP S++ W+ E KK+ ++I
Sbjct: 632 GGILADEMGLGKTLQTIAFLLSEKEERESFSALIVAPASLIYNWQAEVKKFAPSLNIQVI 691
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222
N NK E R+ K IR S +
Sbjct: 692 NGNKKE---------------REELLAKDTDIRVTSYASLR------------------- 717
Query: 223 DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
+L+ + DE +N T +AL + +R LSGTP +NN +EL +
Sbjct: 718 QDLADYQSQKIDYLILDEAQMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLF 777
Query: 283 SLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAP 336
+ + F + RE++ + A +I R R D++ LK+L EK +
Sbjct: 778 ATIMPGFF----PTKTKFRELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYS 829
Query: 337 FVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLL 396
+ + TV L +R + + + F+K + G+ ++ C
Sbjct: 830 ALTEEQKTVYLAYLRQMREEISSMDSEAFKKNRIGILAGLTRLRQI--CCD--------- 878
Query: 397 PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQL 456
P+ F E + S KL ++K L++ +VL+FSQ+ LT++ E+L
Sbjct: 879 PRLFIEDYQGGSGKLEQVKD-----------LLVAAKENKRRVLLFSQFTGMLTILQEEL 927
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
G Y+ G + R S ++ N + + + L S KA G+NL GA V
Sbjct: 928 AEL-----GISTFYLRGSTKPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTV 980
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
+L D+ WNP +E QA RA+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 981 ILYDLWWNPAIEEQAAGRAHRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1034
>gi|312794614|ref|YP_004027537.1| SNF2-like protein [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312181754|gb|ADQ41924.1| SNF2-related protein [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 1108
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 160/617 (25%), Positives = 270/617 (43%), Gaps = 115/617 (18%)
Query: 4 IKDIDPPFATSPSRRAEWREYNNVDPS-FLDDLN---SRDSGFDSQTGCDPFTHAQGTVW 59
+KD+D +A + +++ + S L++LN S+DS FD + T
Sbjct: 580 VKDLDISKKDLKKGKAIFSKFHAIYLSEILENLNLNISKDSAFD--VYVQKMKKIEDTTI 637
Query: 60 ELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGL 119
E +P ++ + + +Q+ G +++ S G G I++ G GKT
Sbjct: 638 E-IPENLNRILREYQKVGVKWL---------------SHLYLNGFGGILADDMGLGKTVQ 681
Query: 120 TLVFLQAYM-KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV 178
L F+ A KL+ C +++AP S++ W++E K++ D+
Sbjct: 682 VLSFISACKDKLNGPC--LVVAPTSLVYNWQQEAKRFTPDLK-----------------T 722
Query: 179 ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFV 237
++D R ++ I +K Y I+ SY L ++ + + DL + V
Sbjct: 723 VVVDGTPAKRSEI--IEKLKDYD------IVITSYSLLKRDID------LYKDLEFSVCV 768
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DE +N + +A+SRI + L+GTP +NN EL + V + L T
Sbjct: 769 VDEAQHIKNPQSFSKEAVSRINAKCCFALTGTPIENNLSELWSIFDFVLPGY---LGTHT 825
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV-NVHKGTVLQESLP----- 351
+ K D++ LK L++ I PFV K VL E LP
Sbjct: 826 RFSERFEKP-----------IVRQNDEKALKLLQKMITPFVLRRLKKDVLSE-LPEKIET 873
Query: 352 GLRHSVVILQPDEFQKRLCKAVEGVKSFVELN----YCVSLLSVHPSLL-----PQQFFE 402
L S+ Q + ++ L KA E +K+ +E + + S+ L P+ F E
Sbjct: 874 NLEVSMTPEQENIYKLYLLKAREDIKNEIEQKGFEKSKIKIFSILTRLRQICCHPKLFLE 933
Query: 403 SFDVDSAKLARLKLDPEAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
+++ S KL + +LE L + + +VFSQ+ E L ++ E+++ R
Sbjct: 934 NYEGSSGKLELFEE-------------ILEDVLESGHRAIVFSQWTEMLRILEERIKDR- 979
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
G E Y+DG ++R N N S Q ++ L S KA G+NL GA V+L D
Sbjct: 980 ----GFEYFYLDGSTKSEERIDMANSFN--SGQKQVFLISLKAGGFGLNLTGADVVILYD 1033
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGG 580
+ WNP VE QA+ RA+R+GQ+ V V+ LIT T+E Q +K + + S+
Sbjct: 1034 LWWNPAVENQAMDRAHRIGQENSVQVFRLITKNTIEERIFELQQKKKDLFDSIVQSA--- 1090
Query: 581 GNDQTTASEPLEDKILE 597
QT ++ ED++++
Sbjct: 1091 ---QTFLTQLSEDELMQ 1104
>gi|326203945|ref|ZP_08193807.1| SNF2 helicase associated domain protein [Clostridium papyrosolvens
DSM 2782]
gi|325986043|gb|EGD46877.1| SNF2 helicase associated domain protein [Clostridium papyrosolvens
DSM 2782]
Length = 1077
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 134/538 (24%), Positives = 228/538 (42%), Gaps = 106/538 (19%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ + +Q+ GF+++ T + G G I++ G GKT +
Sbjct: 608 IPQALKGTLRNYQKLGFKWL---------------KTLSTYGLGGILADDMGLGKTLQII 652
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
LQ + ++I P S++ W E K+ D+ A++
Sbjct: 653 TLLQYDKNVSGPATSIVIVPTSLIYNWCSEIDKFAPDLKI----------------TAVV 696
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
N+ +L + ++ SY L + + D + + DE
Sbjct: 697 GNKAERE---------ELIKAAADSDLIVTSYALIRRDI--DNYKDYMFRYC---ILDEA 742
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301
+N + KA+ ++ ++ R L+GTP +NN EL + + + LR+
Sbjct: 743 QHIKNPGSQAAKAVKQLVSQHRFALTGTPMENNLTELWSVFDFILPGY---LRS------ 793
Query: 302 EISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV-NVHKGTVLQESLPGLRHSVVIL 360
H + + D L L +++ PF+ K VL+E + H I+
Sbjct: 794 ------HGKFVEKFESPISKGDSTALTSLSKQLKPFILRRLKQDVLKELPEKIEH---II 844
Query: 361 QPD--EFQKRLCKA-VEGVKS--FVELNYC------VSLLSV---------HPSLLPQQF 400
Q D E QK+L A +E K F E+N + +LSV HP+L F
Sbjct: 845 QADLTEEQKKLYIAYLEQAKGDIFKEINQNGYERSQIKILSVLTRLRQLCCHPAL----F 900
Query: 401 FESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460
++++ DS KL LK +++ L++ ++L+FSQ+ L +I + L+
Sbjct: 901 VDNYEGDSGKLLLLKE-----------IVVDSLTSGHRILLFSQFTSMLAIIRQWLQE-- 947
Query: 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520
+G + LY+DG ++R + N+ Q +I L S K+ G+NL GA V+ D
Sbjct: 948 ---DGVDYLYLDGSTPAEERMKMVKNFNN--GQGQIFLLSLKSGGTGLNLTGADTVIHYD 1002
Query: 521 VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
WNP VE QA RAYR+GQ + VHV L+T T+E LR + RK + V S +
Sbjct: 1003 PWWNPAVEDQATDRAYRIGQLKTVHVMKLVTHGTIEEKILRLKDRKKQLVDAVIQSGE 1060
>gi|356510796|ref|XP_003524120.1| PREDICTED: uncharacterized protein LOC100793933 [Glycine max]
Length = 2325
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 139/548 (25%), Positives = 235/548 (42%), Gaps = 83/548 (15%)
Query: 55 QGTVWELV--PRDVRK-KMFPHQREGFEFI---WKNIAGGIDLDELKNSTSTGGGNGCII 108
Q ++ L P D++ +FPHQ E ++ W I DE+
Sbjct: 725 QNDIFNLTEQPEDLKGGSLFPHQLEALNWLRKCWYKSKNVILADEM-------------- 770
Query: 109 SHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKP 167
G GKT F+ + Y + +++ P S + W EF+ W N+N
Sbjct: 771 ----GLGKTVSACAFISSLYFEFKVSLPCLVLVPLSTMPNWLAEFELWAP-----NVNVV 821
Query: 168 ELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG 227
E G A+ + GL + + Y + +L +Y + L L G
Sbjct: 822 EYHGCAKARAI-IRQYEWHANNPSGLNKKTEAYKF----NVLLTTYEMV--LADSSHLRG 874
Query: 228 ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287
+ ++ V DEGH +N ++ +F L+ + R++L+GTP QNN E+ N L+ ++
Sbjct: 875 VPWEV---LVVDEGHRLKNSESKLFSLLNTFSFQHRVLLTGTPLQNNLGEMYNLLNFLQP 931
Query: 288 EFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP-FVNVHKGTVL 346
L + +++ A EK+ ELK+ +AP + K +
Sbjct: 932 ASFPSLSLFEEKFNDLTTA------------------EKVDELKKLVAPHMLRRLKKDAM 973
Query: 347 QESLPGLRHSVVI----LQPDEFQKRLCKAVE-------GVKSFVELNYCVSLLSV--HP 393
Q P V + +Q + ++ L K + GV LN + L V HP
Sbjct: 974 QNIPPKTERMVPVELSSIQAEYYRAMLTKNYQVLRNIGKGVAQQSMLNIVMQLRKVCNHP 1033
Query: 394 SLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNE--KVLVFSQYIEPLTL 451
L+P ES V+ R+K A K L +L++ E +VL+FSQ + L +
Sbjct: 1034 YLIPGTEPESGSVEFLHEMRIK----ASAKLTLLHSMLKILHKEGHRVLIFSQMTKLLDI 1089
Query: 452 IMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLV 511
+ + L F + + V DG V RQS+I N S+ + L ST++C GINL
Sbjct: 1090 LEDYLNIEFGPKTYERV---DGSVSVADRQSAIARFNQDKSRF-VFLLSTRSCGLGINLA 1145
Query: 512 GASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSN 571
A V++ D +NP + QA++RA+R+GQ + VY L+ ++E +++ + A+K +
Sbjct: 1146 TADTVIIYDSDFNPHADIQAMNRAHRIGQSNRLLVYRLVVRASVE-ERILQLAKKKLMLD 1204
Query: 572 MVFPSSDG 579
+F + G
Sbjct: 1205 QLFVNKSG 1212
>gi|389751497|gb|EIM92570.1| hypothetical protein STEHIDRAFT_117567 [Stereum hirsutum FP-91666
SS1]
Length = 1940
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 131/495 (26%), Positives = 208/495 (42%), Gaps = 104/495 (21%)
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFY 162
CI++ G GKT F+ K +++ P S + W EF +W +PFY
Sbjct: 938 CILADDMGLGKTVQIATFVGKIAKQWSAYPVLVVVPNSTITNWLREFARWAPGLRVVPFY 997
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222
E G+E +I+ +L + G GL + + + +
Sbjct: 998 G----EAKGRE-------------------IIKRYELRHSQPTAGTSGLKFHVL--VTTY 1032
Query: 223 DELSGILLDLPGLF---------VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQN 273
D +SG D +F + DEG +ND + +FK L+ + T RII++GTP N
Sbjct: 1033 DNVSGSK-DFTSVFKNVDRWEALIVDEGQRLKNDGSLLFKKLNELNTIHRIIMTGTPLNN 1091
Query: 274 NFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEK 333
N +EL N ++ + + L + K + + ++E +K L E+
Sbjct: 1092 NMRELFNLMNFLDPDQWNDLAALEKEYDQ-----------------ENLNEESVKALHER 1134
Query: 334 IAP-FVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV----------------EGV 376
+ P F+ K VL+ LP +V L QK L K+V + V
Sbjct: 1135 LRPYFLRRVKAEVLK--LPPKNEVIVPLSLTPLQKELYKSVLSKNVTLLTSLTRSLGQSV 1192
Query: 377 KS----------FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPE---AGIK 423
K +EL C+ HP LL S D++ L + + A K
Sbjct: 1193 KGASNKSNITNILMELRKCIQ----HPYLL------SPDIEPRGLNQQETHKRLIAASAK 1242
Query: 424 TRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQ 481
R L +LL + +VL+FSQ++ L +I + F EG + L +DG RQ
Sbjct: 1243 LRLLEVLLPKLKARGHRVLLFSQFVIALDIIED-----FINGEGFKYLRLDGNTKQADRQ 1297
Query: 482 SSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQK 541
++ N P+S I L ST+A GINL A V++ D +NP + QAI+R++R GQ
Sbjct: 1298 KGMDEFNRPNSDVFIYLLSTRAGGVGINLWSADTVIIFDPDFNPHQDLQAIARSHRYGQT 1357
Query: 542 RVVHVYHLITSETLE 556
+ V+ L+ +T E
Sbjct: 1358 KPCLVFKLMAKDTAE 1372
>gi|360044224|emb|CCD81771.1| putative chromodomain helicase DNA binding protein [Schistosoma
mansoni]
Length = 1753
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 136/530 (25%), Positives = 229/530 (43%), Gaps = 106/530 (20%)
Query: 67 RKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA 126
R+ + P+Q EG ++W I+ I++ G GKT + L +
Sbjct: 285 RRVLHPYQIEGARWLWHAYHNNIN---------------AILADEMGLGKTVQVIALLYS 329
Query: 127 YMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRK 185
K P +I+ P S L W+ EF W D FY + + K
Sbjct: 330 LWKEENDYGPFIIMTPLSTLQNWDREFSIWAPD--FY---------------IVVYSGDK 372
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLF-----VFDE 240
+ R ++R + + + GI F L++ EL+ I F V DE
Sbjct: 373 QVRA---MLREYE-FRLRNAGGIPA-----FHVLITSHELACIDRSFLKSFDWSVLVVDE 423
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N + F+ S+ T+ +I+L+GTP QN+ +EL + L+ V + R + +
Sbjct: 424 AHRLKNKQSRFFRYTSQYHTKFKILLTGTPLQNSLEELFHLLNFVEPKKFTDFRALSEQW 483
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
E+ K +++K L + + + + + LP VV +
Sbjct: 484 AEMPKT------------------DRIKHLHDLLNRHLLRRLKCDVIQDLPKKTEIVVPV 525
Query: 361 QPDEFQKRLCKAV-----EGVKSFVELNYCVSLLSV--HPSLLPQQFFESFDVDSAKLAR 413
Q+RL K + E ++ +N V L V HP L+ + + R
Sbjct: 526 DMTLLQRRLYKYILTSNYEELRCGNLMNSIVHLQKVCNHPYLM--------QIGDSIAPR 577
Query: 414 LKLD--------PEAGIK-TRFLLILLEL-----STNEKVLVFSQYIEPLTL---IMEQL 456
L L+ P+A ++ + L++L+EL + +VL+FS++ L L +M
Sbjct: 578 LNLNDETNGPYEPKALVQVSSKLVVLMELLRGLFVDDHRVLIFSRFTMMLDLLEQVMINA 637
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
R+++ + +DG+ RQ +I+ N P S+ I L ST+A EGINL A V
Sbjct: 638 RYKY--------VRIDGRVRGPLRQVTIDRFNAPDSEYFIFLLSTRAGGEGINLASADTV 689
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
VL D WNP + QA+SRA+R+GQ + V +Y IT ++E +K+ + AR+
Sbjct: 690 VLYDSDWNPQWDLQALSRAHRIGQSKHVVIYRFITRHSIE-EKISQVARR 738
>gi|432889219|ref|XP_004075171.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like
[Oryzias latipes]
Length = 1684
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 126/502 (25%), Positives = 220/502 (43%), Gaps = 80/502 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S + +W+ E + W
Sbjct: 490 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTVTSWQREIQLWA----- 544
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
P++ N V L D R + ++ L+S ++ IL +Y + K +
Sbjct: 545 -----PQM-----NVVVYLGD--ISSRNMIRTHEWIHLHSRRLKFNILLTTYEILLKDKT 592
Query: 222 GDELSGILLDLPGLFV-FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELEN 280
L ++ F+ DE H +NDD+ ++K + K+ R++++GTP QN+ +EL +
Sbjct: 593 ------FLGNVNWAFIGVDEAHRLKNDDSLLYKTMIDFKSNHRLLITGTPLQNSLKELWS 646
Query: 281 TLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNV 340
L + + + +H GR D L +++ PF+
Sbjct: 647 LLHFIMPD-------------KFHSWEHFEADHGKGR------DSGYTSLHKELEPFLLR 687
Query: 341 HKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-----FVELN 383
+++SLP LR + +Q ++ K L K +G S +EL
Sbjct: 688 RVKKDVEKSLPAKVEQILRVEMTAVQKQYYKWILTRNYKALSKGTKGSTSGFLNVMMELK 747
Query: 384 YCVSLLSVHPSLL--PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLV 441
C + H L+ P F + + +L + + L++ +VL+
Sbjct: 748 KCCN----HCYLIKPPDDEF----LSKVEALQLLIRSSGKLVLLDKLLVRLKERGHRVLI 799
Query: 442 FSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLA 499
FSQ + L ++ + LR R + L+ +DG + R+ +++ N S+ L
Sbjct: 800 FSQMVRMLDILADYLRSR-------QFLFQRLDGSIKGEMRKQALDHFNAEGSEDFCFLL 852
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
ST+A GINL A VV+ D WNP + QA +RA+R+GQKR V++Y L+T ++E D
Sbjct: 853 STRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKRQVNIYRLVTRGSVEEDI 912
Query: 560 LRRQARKVWWSNMVFPSSDGGG 581
+ R +K+ ++V D G
Sbjct: 913 IERAKKKMVLDHLVIQRMDTTG 934
>gi|290889294|gb|ADD69945.1| chromo-helicase DNA-binding protein [Zonotrichia albicollis]
Length = 1808
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 133/507 (26%), Positives = 216/507 (42%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W
Sbjct: 496 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWA----- 550
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
P++ N V L D R ++ + W ++ IL +Y +
Sbjct: 551 -----PQM-----NAVVYLGDITSRN--------MIRTHEWMHPQTKRLKFNILLTTYEI 592
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
K S L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 593 LLKDKSF--LGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 647
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 648 KELWSLLHFIMPEKFSSWEDFEEEHGKGRECGYA----------------------SLHK 685
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 686 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 745
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + H L+ F L L + + L++
Sbjct: 746 LNIMMELKKCCN----HCYLIKPPDDNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRER 800
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 801 GNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSED 854
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 855 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 914
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 915 VEEDILERAKKKMVLDHLVIQRMDTTG 941
>gi|242015095|ref|XP_002428209.1| Chromo domain protein, putative [Pediculus humanus corporis]
gi|212512770|gb|EEB15471.1| Chromo domain protein, putative [Pediculus humanus corporis]
Length = 1795
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 128/499 (25%), Positives = 218/499 (43%), Gaps = 75/499 (15%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFY 162
N I++ G GKT T+ FL + H P +++ P S + +W+ EF W
Sbjct: 453 NSAILADEMGLGKTIQTICFLYYLFRTHQVYGPFLLVVPLSTMTSWQREFSLWA------ 506
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL--FEKLV 220
PE+ N + L D R +IR + W GT L ++ L +E ++
Sbjct: 507 ----PEM-----NFVIYLGDVNSRN-----IIRDYEW--WHTGTKRLKINAVLTTYEIVL 550
Query: 221 SGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELEN 280
G + L V DE H +NDD+ ++KAL+ T R++++GTP QN+ +EL
Sbjct: 551 KDKAFLGCI-SWAALLV-DEAHRLKNDDSLLYKALTEFDTNHRLLITGTPLQNSLKELWA 608
Query: 281 TLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNV 340
L + + K A R +H + +L ++ PF+
Sbjct: 609 LLHFIMPD------------------KFAKW-EDFEREHDHTAQKGYAKLHAQLEPFILR 649
Query: 341 HKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV---------EGVKS--------FVELN 383
+++SLP ++ ++ QK+ K + +GVK +EL
Sbjct: 650 RVKKDVEKSLPSKVEQILRVEMSSLQKQYYKWILTKNYSALRKGVKGSTTTFNNIVIELK 709
Query: 384 YCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFS 443
C + H L E+ ++ L L L + L++ TN +VL+FS
Sbjct: 710 KCCN----HAFLTKPSETENKSNEADSLQML-LRGSGKLVLLDKLLVRLKETNHRVLIFS 764
Query: 444 QYIEPLTLIMEQLR-HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTK 502
Q + L ++ E L+ RF ++ +DG + R+ +++ N +S L ST+
Sbjct: 765 QMVRMLDILAEYLQLRRFQFQR------LDGSIKGEIRKQALDHFNAENSMDFCFLLSTR 818
Query: 503 ACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRR 562
A GINL A V++ D WNP + QA +RA+R+GQK V++Y L+T ++E + + R
Sbjct: 819 AGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTKNSVEEEIIER 878
Query: 563 QARKVWWSNMVFPSSDGGG 581
+K+ ++V D G
Sbjct: 879 AKKKMVLDHLVIQRMDTTG 897
>gi|348526369|ref|XP_003450692.1| PREDICTED: chromodomain-helicase-DNA-binding protein 4-like
[Oreochromis niloticus]
Length = 1972
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 133/512 (25%), Positives = 215/512 (41%), Gaps = 81/512 (15%)
Query: 70 MFPHQREGFE---FIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA 126
+ P+Q EG F W I DE+ G GKT T VFL +
Sbjct: 747 LHPYQLEGLNWLRFSWAQATDTILADEM------------------GLGKTVQTAVFLYS 788
Query: 127 -YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMD 182
Y + H + ++ AP S ++ WE EF+ W D + + +EN +
Sbjct: 789 LYKEGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYIGDKDSRAVIRENE--FSFEG 846
Query: 183 NRKRGRGKVGLIRY---VKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFD 239
N RG K ++ VK + +L SY L + L I V D
Sbjct: 847 NAIRGGKKASKMKKDSPVKFH-------VLLTSYELI--TIDQAVLGSIEW---ACLVVD 894
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS 299
E H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 895 EAHRLKNNQSKFFRVLNNYPLQHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEE 954
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI 359
+I+K ++++K+L + + P + + + +P +V
Sbjct: 955 FADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKHMPSKTELIVR 996
Query: 360 LQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFD 405
++ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 997 VELSSMQKKYYKFI-LTRNFEALNTRGGGNQVSLLNVVMDLKKCCNHPYLFPAAANEAPK 1055
Query: 406 VDSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWRE 464
+ + L +G ++ L +VLVFSQ + L L+ + L + E
Sbjct: 1056 LPNGMYEGTSLTKASGKLMLLQKMMRRLKEGGHRVLVFSQMTKMLDLLEDFLEN-----E 1110
Query: 465 GQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWN 524
G + +DG RQ +I+ N P +Q L ST+A GINL A V++ D WN
Sbjct: 1111 GYKYERIDGGVTGNLRQEAIDRFNAPGAQQFAFLLSTRAGGLGINLASADTVIIYDSDWN 1170
Query: 525 PFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
P + QA SRA+R+GQ R V +Y +T ++E
Sbjct: 1171 PHNDIQAFSRAHRIGQNRKVMIYRFVTKASVE 1202
>gi|114600959|ref|XP_517850.2| PREDICTED: chromodomain-helicase-DNA-binding protein 1 [Pan
troglodytes]
gi|410223612|gb|JAA09025.1| chromodomain helicase DNA binding protein 1 [Pan troglodytes]
gi|410267810|gb|JAA21871.1| chromodomain helicase DNA binding protein 1 [Pan troglodytes]
gi|410295342|gb|JAA26271.1| chromodomain helicase DNA binding protein 1 [Pan troglodytes]
gi|410355249|gb|JAA44228.1| chromodomain helicase DNA binding protein 1 [Pan troglodytes]
Length = 1710
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 130/501 (25%), Positives = 212/501 (42%), Gaps = 77/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 499 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 556
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
N V L D R + + + ++ IL +Y + L
Sbjct: 557 -------------NAVVYLGD--INSRNMIRTHEWTHHQTKRLKFNILLTTYEIL--LKD 599
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+ +EL +
Sbjct: 600 KAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSL 656
Query: 282 LSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
L + E F E GRE A L +++ PF+
Sbjct: 657 LHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHKELEPFL 694
Query: 339 NVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-----FVE 381
+++SLP LR + LQ ++ K L K +G S +E
Sbjct: 695 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 754
Query: 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLV 441
L C + H L+ F L L + + L++ +VL+
Sbjct: 755 LKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRERGNRVLI 809
Query: 442 FSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500
FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+ L S
Sbjct: 810 FSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSEDFCFLLS 863
Query: 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKL 560
T+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T ++E D L
Sbjct: 864 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL 923
Query: 561 RRQARKVWWSNMVFPSSDGGG 581
R +K+ ++V D G
Sbjct: 924 ERAKKKMVLDHLVIQRMDTTG 944
>gi|297675709|ref|XP_002815806.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1 [Pongo
abelii]
Length = 1709
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 130/501 (25%), Positives = 212/501 (42%), Gaps = 77/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 499 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 556
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
N V L D R + + + ++ IL +Y + L
Sbjct: 557 -------------NAVVYLGD--INSRNMIRTHEWTHHQTKRLKFNILLTTYEIL--LKD 599
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+ +EL +
Sbjct: 600 KAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSL 656
Query: 282 LSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
L + E F E GRE A L +++ PF+
Sbjct: 657 LHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHKELEPFL 694
Query: 339 NVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-----FVE 381
+++SLP LR + LQ ++ K L K +G S +E
Sbjct: 695 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 754
Query: 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLV 441
L C + H L+ F L L + + L++ +VL+
Sbjct: 755 LKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRERGNRVLI 809
Query: 442 FSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500
FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+ L S
Sbjct: 810 FSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSEDFCFLLS 863
Query: 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKL 560
T+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T ++E D L
Sbjct: 864 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL 923
Query: 561 RRQARKVWWSNMVFPSSDGGG 581
R +K+ ++V D G
Sbjct: 924 ERAKKKMVLDHLVIQRMDTTG 944
>gi|157107192|ref|XP_001649666.1| chromodomain helicase DNA binding protein [Aedes aegypti]
gi|108879647|gb|EAT43872.1| AAEL004716-PB [Aedes aegypti]
Length = 2001
Score = 125 bits (313), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 123/500 (24%), Positives = 214/500 (42%), Gaps = 77/500 (15%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVI-IAPRSMLLTWEEEFKKWGIDIPFY 162
N I++ G GKT T+ FL K P + + P S + W+ EF W
Sbjct: 596 NSVILADEMGLGKTIQTICFLYYLFKAQQLYGPFLCVVPLSTMTAWQREFAIWA------ 649
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL--FEKLV 220
PE++ V + G V ++ Y W L + L +E L+
Sbjct: 650 ----PEMN------VVTYL-------GDVASREIIRQYEWCFPNQKLKFNAILTTYEILL 692
Query: 221 SGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELEN 280
G + + + DE H +NDD+ ++KAL T R++++GTP QN+ +EL
Sbjct: 693 KDKTFLGSVS--WAVLLVDEAHRLKNDDSLLYKALEEFDTNYRLLITGTPLQNSLKELWA 750
Query: 281 TLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNV 340
L + + + + N +D+ +L +++ P++
Sbjct: 751 LLHFIMPNRFDTWESFER------------------LYGNTSNDKSYTKLHKELEPYILR 792
Query: 341 HKGTVLQESLPG-----LRHSVVILQPDEFQKRLCKAVEGVKS------------FVELN 383
+++SLP LR + LQ ++ L K + ++ +EL
Sbjct: 793 RVKKDVEKSLPAKVEQILRVEMTSLQRQYYRWILTKNFDALRKGTKGSINTFLNIMIELK 852
Query: 384 YCVSLLSVHPSLL-PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVF 442
C + H L P++F + D + LK + + + L L E T +VL+F
Sbjct: 853 KCCN----HALLTKPEEFENQTNQDEVVVQLLKGSGKLVLLDKLLCRLKE--TGHRVLIF 906
Query: 443 SQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAST 501
SQ + L ++ E L+ R F+++ +DG + R+ +++ N S L ST
Sbjct: 907 SQMVRMLDILAEYLQKRHFSFQR------LDGSIKGELRKQALDHFNAEGSTDFCFLLST 960
Query: 502 KACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561
+A GINL A V++ D WNP + QA +RA+R+GQK V++Y L+T+ ++E D +
Sbjct: 961 RAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEDIVE 1020
Query: 562 RQARKVWWSNMVFPSSDGGG 581
R +K+ ++V D G
Sbjct: 1021 RAKKKMVLDHLVIQRMDTTG 1040
>gi|332256287|ref|XP_003277252.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1 [Nomascus
leucogenys]
Length = 1702
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 130/501 (25%), Positives = 212/501 (42%), Gaps = 77/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 499 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 556
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
N V L D R + + + ++ IL +Y + L
Sbjct: 557 -------------NAVVYLGD--INSRNMIRTHEWTHHQTKRLKFNILLTTYEIL--LKD 599
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+ +EL +
Sbjct: 600 KAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSL 656
Query: 282 LSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
L + E F E GRE A L +++ PF+
Sbjct: 657 LHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHKELEPFL 694
Query: 339 NVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-----FVE 381
+++SLP LR + LQ ++ K L K +G S +E
Sbjct: 695 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 754
Query: 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLV 441
L C + H L+ F L L + + L++ +VL+
Sbjct: 755 LKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRERGNRVLI 809
Query: 442 FSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500
FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+ L S
Sbjct: 810 FSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSEDFCFLLS 863
Query: 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKL 560
T+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T ++E D L
Sbjct: 864 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL 923
Query: 561 RRQARKVWWSNMVFPSSDGGG 581
R +K+ ++V D G
Sbjct: 924 ERAKKKMVLDHLVIQRMDTTG 944
>gi|296194069|ref|XP_002744792.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1 [Callithrix
jacchus]
Length = 1713
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 130/507 (25%), Positives = 213/507 (42%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 501 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 558
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
N V L G + ++ + W ++ IL +Y +
Sbjct: 559 -------------NAVVYL--------GDINSRNMIRTHEWMHPQTKRLKFNILLTTYEI 597
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
L L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 598 L--LKDKAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 652
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 653 KELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHK 690
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 691 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 750
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + H L+ F L L + + L++
Sbjct: 751 LNIMMELKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRER 805
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 806 GNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSED 859
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 860 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 919
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 920 VEEDILERAKKKMVLDHLVIQRMDTTG 946
>gi|417515818|gb|JAA53717.1| chromodomain helicase DNA binding protein 1 [Sus scrofa]
Length = 1706
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 130/507 (25%), Positives = 213/507 (42%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 493 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 550
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
N V L G + ++ + W ++ IL +Y +
Sbjct: 551 -------------NAVVYL--------GDINSRNMIRTHEWMHPQTKRLKFNILLTTYEI 589
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
L L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 590 L--LKDKAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 644
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 645 KELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHK 682
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 683 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 742
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + H L+ F L L + + L++
Sbjct: 743 LNIMMELKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRER 797
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 798 GNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSED 851
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 852 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 911
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 912 VEEDILERAKKKMVLDHLVIQRMDTTG 938
>gi|149726480|ref|XP_001504655.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1 [Equus
caballus]
Length = 1713
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 130/507 (25%), Positives = 213/507 (42%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 500 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 557
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
N V L G + ++ + W ++ IL +Y +
Sbjct: 558 -------------NAVVYL--------GDINSRNMIRTHEWMHPQTKRLKFNILLTTYEI 596
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
L L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 597 L--LKDKAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 651
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 652 KELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHK 689
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 690 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 749
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + H L+ F L L + + L++
Sbjct: 750 LNIMMELKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRER 804
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 805 GNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSED 858
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 859 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 918
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 919 VEEDILERAKKKMVLDHLVIQRMDTTG 945
>gi|351704453|gb|EHB07372.1| Chromodomain-helicase-DNA-binding protein 1 [Heterocephalus glaber]
Length = 1719
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 131/507 (25%), Positives = 213/507 (42%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 506 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 563
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
N V L D R ++ + W ++ IL +Y +
Sbjct: 564 -------------NAVVYLGDINSRN--------MIRTHEWMHPQTKRLKFNILLTTYEI 602
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
L L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 603 L--LKDKAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 657
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 658 KELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHK 695
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 696 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 755
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + H L+ F L L + + L++
Sbjct: 756 LNIMMELKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRER 810
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 811 GNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSED 864
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 865 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 924
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 925 VEEDILERAKKKMVLDHLVIQRMDTTG 951
>gi|302913005|ref|XP_003050823.1| hypothetical protein NECHADRAFT_80466 [Nectria haematococca mpVI
77-13-4]
gi|256731761|gb|EEU45110.1| hypothetical protein NECHADRAFT_80466 [Nectria haematococca mpVI
77-13-4]
Length = 1514
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 140/529 (26%), Positives = 233/529 (44%), Gaps = 92/529 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
G +++ G GKT + + + ++ PRC P +I+ P + W EFK+W
Sbjct: 789 GRSVVLADEMGLGKTVQVVGLVTSLIQDSPRCWPFLIVVPNATCPNWRREFKQWA----- 843
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLY---SWKMGTGILGLSYRLFEK 218
PEL +G G+ L +L+ S M ++ +SY +
Sbjct: 844 -----PELRVVAYHG----------GKEPQSLAHKYELFPNGSTDMKAHVVIMSYDSAQD 888
Query: 219 LVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
+ + + GL V DEG +ND ++ AL +K R++L+GTP QNN +EL
Sbjct: 889 PATKSIFKSV--NWAGLVV-DEGQRLKNDQNILYGALRSMKIPFRLLLTGTPLQNNKREL 945
Query: 279 ENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP-F 337
N L + + +K+ E+ A++A L D E L +L +I P F
Sbjct: 946 FNLLQFIDE---------KKNAEELD-AEYAVL-----------DKETLPQLHNEIRPYF 984
Query: 338 VNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV-----EGVKS-------------- 378
+ K VL+ LP + ++ + Q++L K++ E +K+
Sbjct: 985 LRRTKAGVLK-FLPPMSQIILPVTMTVIQEKLSKSIMAKNPELIKAMFSNSKMNKKERGS 1043
Query: 379 ----FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE-- 432
++L C+ HP + + E D D L R + EA K L ++L
Sbjct: 1044 LNNILMQLRKCL----CHP-FMYSEAIEERDHDPTVLQRNLV--EASAKLLLLQVMLPKL 1096
Query: 433 LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ++ L +I + F G + +DG ++Q I+ N P S
Sbjct: 1097 QEKGHRVLIFSQFLNQLDIIED-----FLGGLGYDYRRLDGSIGSLEKQRRIDAFNAPGS 1151
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
L ST+A GINL A V++LD +NP + QA+SRA+R+GQK+ V + L+T
Sbjct: 1152 PIFAFLLSTRAGGVGINLATADTVIILDPDFNPHQDIQALSRAHRIGQKKKVLCFQLMTV 1211
Query: 553 ETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQ 601
+++E ++ +K+ + + S D D A + LE IL+ AQ
Sbjct: 1212 DSVEERIMQIGKKKMALDHALIESMD----DDELAGDDLE-SILKHGAQ 1255
>gi|396467270|ref|XP_003837884.1| hypothetical protein LEMA_P122040.1 [Leptosphaeria maculans JN3]
gi|312214448|emb|CBX94440.1| hypothetical protein LEMA_P122040.1 [Leptosphaeria maculans JN3]
Length = 1719
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 139/530 (26%), Positives = 227/530 (42%), Gaps = 107/530 (20%)
Query: 69 KMFPHQREGFEFI---WKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQ 125
++ +Q EG +I W + GI DE+ G GKT + FL
Sbjct: 730 ELMKYQIEGLNWIYYQWYSQKNGILADEM------------------GLGKTIQVIAFLA 771
Query: 126 AYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNR 184
++ H C P +I+ P S W E K+W P L G+ D
Sbjct: 772 TLIQEH-NCFPFLIVVPNSTCANWRREIKQWA----------PSLRVVAYFGSSQARDMA 820
Query: 185 KR----GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
+ G L ++ + S++ S R F + V+ +G+++D E
Sbjct: 821 HKYEMFPEGTKELRCHIVVTSYEAAAD---ESCRRFFRSVN---WAGMIID--------E 866
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
G +ND + ++ AL+ +K+ R++L+GTP QNN +EL N L + T+ +
Sbjct: 867 GQRLKNDKSQLYTALTAVKSPFRLLLTGTPLQNNARELFNLLHFLDD-------TIDAAA 919
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
E K+A + S E +KEL ++I PF+ + LP L ++ +
Sbjct: 920 LE---EKYAEMTS-----------ENVKELHDQIRPFILRRTKAQVLTFLPPLGQVILPI 965
Query: 361 QPDEFQKRLCKAV---------------EGVKSFVELNYCVSLLSV-----HPSLLPQQF 400
QK+L K++ + +K N L+ + HP + ++
Sbjct: 966 SMSHLQKQLYKSILSKSPELLKALFTSTQSLKQQERANLSNILMQLRKCLCHPFVYSREI 1025
Query: 401 FESFDVDSAKLARLKLDPEAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLIMEQLRH 458
E D+ + L EA K L ILL +VL+FSQ+++ L +I + L
Sbjct: 1026 EERTDIAAVSHRNLV---EASAKLSLLEILLPKLQERGHRVLIFSQFLDMLNIIEDFL-- 1080
Query: 459 RFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
+G ++ Y +DG ++Q I+ N P S L ST+A GINL A V
Sbjct: 1081 -----DGMQLSYQRLDGTMGSLEKQKRIDQFNAPDSPLFAFLLSTRAGGVGINLATADTV 1135
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
++LD WNP + QAI+RA+R+GQK+ V L T ++E +K+ + RK
Sbjct: 1136 IILDPDWNPHQDLQAIARAHRIGQKKKVLCLQLTTRASVE-EKIMQMGRK 1184
>gi|355750085|gb|EHH54423.1| Chromodomain-helicase-DNA-binding protein 1 [Macaca fascicularis]
gi|380809118|gb|AFE76434.1| chromodomain-helicase-DNA-binding protein 1 [Macaca mulatta]
gi|383415415|gb|AFH30921.1| chromodomain-helicase-DNA-binding protein 1 [Macaca mulatta]
gi|384945016|gb|AFI36113.1| chromodomain-helicase-DNA-binding protein 1 [Macaca mulatta]
Length = 1712
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 130/501 (25%), Positives = 212/501 (42%), Gaps = 77/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 501 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 558
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
N V L D R + + + ++ IL +Y + L
Sbjct: 559 -------------NAVVYLGD--INSRNMIRTHEWTHHQTKRLKFNILLTTYEIL--LKD 601
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+ +EL +
Sbjct: 602 KAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSL 658
Query: 282 LSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
L + E F E GRE A L +++ PF+
Sbjct: 659 LHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHKELEPFL 696
Query: 339 NVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-----FVE 381
+++SLP LR + LQ ++ K L K +G S +E
Sbjct: 697 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 756
Query: 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLV 441
L C + H L+ F L L + + L++ +VL+
Sbjct: 757 LKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRERGNRVLI 811
Query: 442 FSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500
FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+ L S
Sbjct: 812 FSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSEDFCFLLS 865
Query: 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKL 560
T+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T ++E D L
Sbjct: 866 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL 925
Query: 561 RRQARKVWWSNMVFPSSDGGG 581
R +K+ ++V D G
Sbjct: 926 ERAKKKMVLDHLVIQRMDTTG 946
>gi|301607806|ref|XP_002933489.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like
[Xenopus (Silurana) tropicalis]
Length = 1708
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 131/507 (25%), Positives = 218/507 (42%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W P
Sbjct: 410 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQIWA---PL 466
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
N AV + G + ++ + W ++ +L +Y +
Sbjct: 467 MN-------------AVVYL-------GDINSRNMIRTHEWMHPQTKRLKLNVLLTTYEI 506
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
K S L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 507 LLKDKSF--LGGVNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 561
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 562 KELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHK 599
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKR------------LCKAVEGVKS-- 378
++ PF+ +++SLP ++ ++ QK+ L K +G S
Sbjct: 600 ELEPFLLRRVKKDVEKSLPAKVEQILRVEMSASQKQYYKWILTRNYKALSKGSKGSTSGF 659
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + + + P + E ++ A L L I LL+ L
Sbjct: 660 LNIMMELKKCCNHCYL---IKPPEENEFYNRQEA-LQHLIRSSGKLILLDKLLVRLRERG 715
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
N +VL+FSQ + L ++ E L+ R F ++ +DG + R+ +++ N S+
Sbjct: 716 N-RVLIFSQMVRMLDILAEYLKSRQFPFQR------LDGSIKGEVRKQALDHFNAEGSED 768
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 769 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 828
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D + R +K+ ++V D G
Sbjct: 829 VEEDIIERAKKKMVLDHLVIQRMDTTG 855
>gi|109078102|ref|XP_001097125.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Macaca
mulatta]
Length = 1712
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/501 (25%), Positives = 212/501 (42%), Gaps = 77/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 501 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 558
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
N V L D R + + + ++ IL +Y + L
Sbjct: 559 -------------NAVVYLGD--INSRNMIRTHEWTHHQTKRLKFNILLTTYEIL--LKD 601
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+ +EL +
Sbjct: 602 KAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSL 658
Query: 282 LSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
L + E F E GRE A L +++ PF+
Sbjct: 659 LHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHKELEPFL 696
Query: 339 NVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-----FVE 381
+++SLP LR + LQ ++ K L K +G S +E
Sbjct: 697 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 756
Query: 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLV 441
L C + H L+ F L L + + L++ +VL+
Sbjct: 757 LKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRERGNRVLI 811
Query: 442 FSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500
FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+ L S
Sbjct: 812 FSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSEDFCFLLS 865
Query: 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKL 560
T+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T ++E D L
Sbjct: 866 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL 925
Query: 561 RRQARKVWWSNMVFPSSDGGG 581
R +K+ ++V D G
Sbjct: 926 ERAKKKMVLDHLVIQRMDTTG 946
>gi|157107190|ref|XP_001649665.1| chromodomain helicase DNA binding protein [Aedes aegypti]
gi|108879646|gb|EAT43871.1| AAEL004716-PA [Aedes aegypti]
Length = 2002
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 123/500 (24%), Positives = 214/500 (42%), Gaps = 77/500 (15%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVI-IAPRSMLLTWEEEFKKWGIDIPFY 162
N I++ G GKT T+ FL K P + + P S + W+ EF W
Sbjct: 596 NSVILADEMGLGKTIQTICFLYYLFKAQQLYGPFLCVVPLSTMTAWQREFAIWA------ 649
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL--FEKLV 220
PE++ V + G V ++ Y W L + L +E L+
Sbjct: 650 ----PEMN------VVTYL-------GDVASREIIRQYEWCFPNQKLKFNAILTTYEILL 692
Query: 221 SGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELEN 280
G + + + DE H +NDD+ ++KAL T R++++GTP QN+ +EL
Sbjct: 693 KDKTFLGSVS--WAVLLVDEAHRLKNDDSLLYKALEEFDTNYRLLITGTPLQNSLKELWA 750
Query: 281 TLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNV 340
L + + + + N +D+ +L +++ P++
Sbjct: 751 LLHFIMPNRFDTWESFER------------------LYGNTSNDKSYTKLHKELEPYILR 792
Query: 341 HKGTVLQESLPG-----LRHSVVILQPDEFQKRLCKAVEGVKS------------FVELN 383
+++SLP LR + LQ ++ L K + ++ +EL
Sbjct: 793 RVKKDVEKSLPAKVEQILRVEMTSLQRQYYRWILTKNFDALRKGTKGSINTFLNIMIELK 852
Query: 384 YCVSLLSVHPSLL-PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVF 442
C + H L P++F + D + LK + + + L L E T +VL+F
Sbjct: 853 KCCN----HALLTKPEEFENQTNQDEVVVQLLKGSGKLVLLDKLLCRLKE--TGHRVLIF 906
Query: 443 SQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAST 501
SQ + L ++ E L+ R F+++ +DG + R+ +++ N S L ST
Sbjct: 907 SQMVRMLDILAEYLQKRHFSFQR------LDGSIKGELRKQALDHFNAEGSTDFCFLLST 960
Query: 502 KACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561
+A GINL A V++ D WNP + QA +RA+R+GQK V++Y L+T+ ++E D +
Sbjct: 961 RAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEDIVE 1020
Query: 562 RQARKVWWSNMVFPSSDGGG 581
R +K+ ++V D G
Sbjct: 1021 RAKKKMVLDHLVIQRMDTTG 1040
>gi|440904435|gb|ELR54952.1| Chromodomain-helicase-DNA-binding protein 1, partial [Bos grunniens
mutus]
Length = 1777
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/507 (25%), Positives = 213/507 (42%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 476 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 533
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
N V L G + ++ + W ++ IL +Y +
Sbjct: 534 -------------NAVVYL--------GDINSRNMIRTHEWMHPQTKRLKFNILLTTYEI 572
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
L L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 573 L--LKDKAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 627
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 628 KELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHK 665
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 666 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 725
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + H L+ F L L + + L++
Sbjct: 726 LNIMMELKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRER 780
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 781 GNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSED 834
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 835 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 894
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 895 VEEDILERAKKKMVLDHLVIQRMDTTG 921
>gi|1448983|gb|AAC37264.1| chromodomain-helicase-DNA-binding protein [Drosophila melanogaster]
Length = 1883
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 123/502 (24%), Positives = 215/502 (42%), Gaps = 80/502 (15%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVI-IAPRSMLLTWEEEFKKWGIDIPFY 162
N I++ G GKT T+ FL + K+H P + + P S + W+ EF W D+
Sbjct: 547 NSVILADEMGLGKTIQTICFLYSLFKIHHLYGPFLCVVPLSTMTAWQREFDLWAPDM--- 603
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGI---LGLSYRLFEKL 219
N L D + R ++ Y W+ + +E +
Sbjct: 604 ------------NVVTYLGDIKSR--------ELIQQYEWQFESSKRLKFNCILTTYEIV 643
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ + G L L V DE H +NDD+ ++K+L T R++++GTP QN+ +EL
Sbjct: 644 LKDKQFLGTL-QWAALLV-DEAHRLKNDDSLLYKSLKEFDTNHRLLITGTPLQNSLKELW 701
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVN 339
L + + + + +H + +D+ L +++ P++
Sbjct: 702 ALLHFIMPDKFDTWENF--------EVQHGNA-----------EDKGHTRLHQQLEPYIL 742
Query: 340 VHKGTVLQESLPG-----LRHSVVILQPDEFQKRLCKAVEGVKS------------FVEL 382
+++SLP LR + LQ ++ L K + ++ +EL
Sbjct: 743 RRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNFDALRKGKRGSTSTFLNIVIEL 802
Query: 383 NYCVSLLSVHPSLLPQQFFE--SFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVL 440
C + H +L+ FE D A LK + + + L L E T +VL
Sbjct: 803 KKCCN----HAALIRPSEFELMGLQQDEALQTLLKGSGKLVLLDKLLCRLKE--TGHRVL 856
Query: 441 VFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
+FSQ + L ++ + L+ R F ++ +DG + R+ +++ N SQ L
Sbjct: 857 IFSQMVRMLDVLADYLQKRHFPFQR------LDGSIKGEMRRQALDHFNAEGSQDFCFLL 910
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
ST+A GINL A V++ D WNP + QA +RA+R+GQK V++Y L+T+ ++E
Sbjct: 911 STRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQI 970
Query: 560 LRRQARKVWWSNMVFPSSDGGG 581
+ R +K+ ++V D G
Sbjct: 971 VERAKQKMVLDHLVIQRMDTTG 992
>gi|109658944|gb|AAI17135.1| Chromodomain helicase DNA binding protein 1 [Homo sapiens]
Length = 1709
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/501 (25%), Positives = 212/501 (42%), Gaps = 77/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 499 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 556
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
N V L D R + + + ++ IL +Y + L
Sbjct: 557 -------------NAVVYLGD--INSRNMIRTHEWTHHQTKRLKFNILLTTYEIL--LKD 599
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+ +EL +
Sbjct: 600 KAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSL 656
Query: 282 LSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
L + E F E GRE A L +++ PF+
Sbjct: 657 LHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHKELEPFL 694
Query: 339 NVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-----FVE 381
+++SLP LR + LQ ++ K L K +G S +E
Sbjct: 695 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 754
Query: 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLV 441
L C + H L+ F L L + + L++ +VL+
Sbjct: 755 LKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRERGNRVLI 809
Query: 442 FSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500
FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+ L S
Sbjct: 810 FSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSEDFCFLLS 863
Query: 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKL 560
T+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T ++E D L
Sbjct: 864 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL 923
Query: 561 RRQARKVWWSNMVFPSSDGGG 581
R +K+ ++V D G
Sbjct: 924 ERAKKKMVLDHLVIQRMDTTG 944
>gi|73951996|ref|XP_848459.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1 isoform 2
[Canis lupus familiaris]
Length = 1711
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/507 (25%), Positives = 213/507 (42%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 498 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 555
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
N V L G + ++ + W ++ IL +Y +
Sbjct: 556 -------------NAVVYL--------GDINSRNMIRTHEWMHPQTKRLKFNILLTTYEI 594
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
L L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 595 L--LKDKAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 649
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 650 KELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHK 687
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 688 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 747
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + H L+ F L L + + L++
Sbjct: 748 LNIMMELKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRER 802
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 803 GNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSED 856
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 857 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 916
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 917 VEEDILERAKKKMVLDHLVIQRMDTTG 943
>gi|281350318|gb|EFB25902.1| hypothetical protein PANDA_008326 [Ailuropoda melanoleuca]
Length = 1566
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/507 (25%), Positives = 213/507 (42%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 353 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 410
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
N V L G + ++ + W ++ IL +Y +
Sbjct: 411 -------------NAVVYL--------GDINSRNMIRTHEWMHPQTKRLKFNILLTTYEI 449
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
L L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 450 L--LKDKAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 504
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 505 KELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHK 542
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 543 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 602
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + H L+ F L L + + L++
Sbjct: 603 LNIMMELKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRER 657
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 658 GNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSED 711
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 712 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 771
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 772 VEEDILERAKKKMVLDHLVIQRMDTTG 798
>gi|328868808|gb|EGG17186.1| chromo domain-containing protein [Dictyostelium fasciculatum]
Length = 1716
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 119/491 (24%), Positives = 216/491 (43%), Gaps = 67/491 (13%)
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYN 163
I++ G GKT T+ F+ + P +++ P S + W+ EF KW
Sbjct: 622 NVILADEMGLGKTIQTISFISYLYNVQQMSGPYLVVVPLSTIENWQREFAKWA------- 674
Query: 164 LNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL--FEKLVS 221
P ++ G+ D +I+ + Y ++ G L + L ++ ++
Sbjct: 675 ---PSMNLIVYTGSAGSRD----------IIKEYEFYQYQYGKKKLNFNVLLTTYDFILK 721
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
++ G + DE H +N+++ + + L KT R++++GTP QN+ +EL N
Sbjct: 722 DKQVLGSIK--WEYLAVDEAHRLKNNESMLHEVLKFFKTGNRLLVTGTPLQNSMKELWNL 779
Query: 282 LSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVH 341
L+ + K SL + ++ ++ +++ EL ++ P +
Sbjct: 780 LNF------------------LMPNKFHSLKDFQDQWSDLKEKDQIAELHNELKPHLLRR 821
Query: 342 KGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCV-----SLLSV----- 391
+++SLP ++ + QK+ + + K+F ELN V SLL++
Sbjct: 822 IKKEVEKSLPAKTERILRVDLSPLQKKYYRLILK-KNFQELNKGVKGEKTSLLNIVVELK 880
Query: 392 ----HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIE 447
HP L E+++ L + + L++ T +VL+FSQ +
Sbjct: 881 KTCNHPYLFESAENENYNDSLDALIK----GSGKLILLDKLLIRLKETGHRVLIFSQMVR 936
Query: 448 PLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEG 507
L ++ L+HR G +DG +KR +++ N S L ST+A G
Sbjct: 937 MLDILARYLKHR-----GFLFQRLDGSMSREKRSQAMDRFNAEGSPDFCFLLSTRAGGLG 991
Query: 508 INLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567
INL A VV+ D +NP + QA +RA+R+GQK V++Y L+T +T+E D L R +K+
Sbjct: 992 INLSTADTVVIFDSDYNPQNDLQAEARAHRIGQKNAVNIYRLVTKKTVEEDILERAKQKM 1051
Query: 568 WWSNMVFPSSD 578
++V S D
Sbjct: 1052 VLDHLVIQSMD 1062
>gi|293568350|ref|ZP_06679673.1| Snf2 family protein [Enterococcus faecium E1071]
gi|291588959|gb|EFF20784.1| Snf2 family protein [Enterococcus faecium E1071]
Length = 1064
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 128/515 (24%), Positives = 220/515 (42%), Gaps = 92/515 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ + M +Q++GF W + G G I++ G GKT T+
Sbjct: 604 LPKGLNATMRDYQKQGFR--WLKMLGHYQF-------------GGILADEMGLGKTLQTI 648
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
FL + + +I+AP S++ W+ E +K+ P LS + NG
Sbjct: 649 AFLLSEKEERKSFSALIVAPASLIYNWQAEVRKFA----------PSLSIQVING----- 693
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
N+K+ + T I SY + ++ + I + DE
Sbjct: 694 -NKKKREELLA-----------KDTDIRVTSYASLRQDLANYQSQKI-----DYLILDEA 736
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301
+N T +AL + +R LSGTP +NN +EL + + + F + R
Sbjct: 737 QMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLFATIMPGFF----PTKTKFR 792
Query: 302 EISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAPFVNVHKGTVLQESLPGLRH 355
E++ + A +I R R D++ LK+L EK + + + TV L +R
Sbjct: 793 ELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYSALTEEQKTVYLAYLRQMRE 848
Query: 356 SVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLK 415
+ + + F+K + G+ ++ C P+ F E + S KL ++K
Sbjct: 849 EITSMDSEAFKKNRIGILAGLTRLRQI--CCD---------PRLFIEDYQGGSGKLEQVK 897
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
L++ +VL+FSQ+ LT++ E+L G Y+ G
Sbjct: 898 D-----------LLVAAKENKRRVLLFSQFTGMLTILQEELAEL-----GISTFYLRGST 941
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
+ R S ++ N + + + L S KA G+NL GA V+L D+ WNP +E QA RA
Sbjct: 942 KPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTVILYDLWWNPAIEEQAAGRA 999
Query: 536 YRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 1000 HRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1034
>gi|68299795|ref|NP_001261.2| chromodomain-helicase-DNA-binding protein 1 [Homo sapiens]
gi|269849549|sp|O14646.2|CHD1_HUMAN RecName: Full=Chromodomain-helicase-DNA-binding protein 1;
Short=CHD-1; AltName: Full=ATP-dependent helicase CHD1
gi|119616504|gb|EAW96098.1| chromodomain helicase DNA binding protein 1 [Homo sapiens]
Length = 1710
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/501 (25%), Positives = 212/501 (42%), Gaps = 77/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 499 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 556
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
N V L D R + + + ++ IL +Y + L
Sbjct: 557 -------------NAVVYLGD--INSRNMIRTHEWTHHQTKRLKFNILLTTYEIL--LKD 599
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+ +EL +
Sbjct: 600 KAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSL 656
Query: 282 LSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
L + E F E GRE A L +++ PF+
Sbjct: 657 LHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHKELEPFL 694
Query: 339 NVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-----FVE 381
+++SLP LR + LQ ++ K L K +G S +E
Sbjct: 695 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 754
Query: 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLV 441
L C + H L+ F L L + + L++ +VL+
Sbjct: 755 LKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRERGNRVLI 809
Query: 442 FSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500
FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+ L S
Sbjct: 810 FSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSEDFCFLLS 863
Query: 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKL 560
T+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T ++E D L
Sbjct: 864 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL 923
Query: 561 RRQARKVWWSNMVFPSSDGGG 581
R +K+ ++V D G
Sbjct: 924 ERAKKKMVLDHLVIQRMDTTG 944
>gi|449280623|gb|EMC87869.1| Chromodomain-helicase-DNA-binding protein 1, partial [Columba
livia]
Length = 1781
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 133/507 (26%), Positives = 215/507 (42%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W
Sbjct: 478 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWA----- 532
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
P + N V L D R ++ + W ++ IL +Y +
Sbjct: 533 -----PHM-----NAVVYLGDITSRN--------MIRTHEWMHPQTKRLKFNILLTTYEI 574
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
K S L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 575 LLKDKSF--LGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 629
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 630 KELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHK 667
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 668 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 727
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + H L+ F L L + + L++
Sbjct: 728 LNIMMELKKCCN----HCYLIKPPDDNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRER 782
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 783 GNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSED 836
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 837 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 896
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 897 VEEDILERAKKKMVLDHLVIQRMDTTG 923
>gi|345798529|ref|XP_003434456.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1 [Canis lupus
familiaris]
Length = 1711
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/507 (25%), Positives = 213/507 (42%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 498 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 555
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
N V L G + ++ + W ++ IL +Y +
Sbjct: 556 -------------NAVVYL--------GDINSRNMIRTHEWMHPQTKRLKFNILLTTYEI 594
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
L L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 595 L--LKDKAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 649
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 650 KELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHK 687
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 688 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 747
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + H L+ F L L + + L++
Sbjct: 748 LNIMMELKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRER 802
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 803 GNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSED 856
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 857 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 916
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 917 VEEDILERAKKKMVLDHLVIQRMDTTG 943
>gi|426349547|ref|XP_004042358.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1 [Gorilla
gorilla gorilla]
Length = 1733
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/501 (25%), Positives = 212/501 (42%), Gaps = 77/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 499 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 556
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
N V L D R + + + ++ IL +Y + L
Sbjct: 557 -------------NAVVYLGD--INSRNMIRTHEWTHHQTKRLKFNILLTTYEIL--LKD 599
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+ +EL +
Sbjct: 600 KAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSL 656
Query: 282 LSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
L + E F E GRE A L +++ PF+
Sbjct: 657 LHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHKELEPFL 694
Query: 339 NVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-----FVE 381
+++SLP LR + LQ ++ K L K +G S +E
Sbjct: 695 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 754
Query: 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLV 441
L C + H L+ F L L + + L++ +VL+
Sbjct: 755 LKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRERGNRVLI 809
Query: 442 FSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500
FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+ L S
Sbjct: 810 FSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSEDFCFLLS 863
Query: 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKL 560
T+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T ++E D L
Sbjct: 864 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL 923
Query: 561 RRQARKVWWSNMVFPSSDGGG 581
R +K+ ++V D G
Sbjct: 924 ERAKKKMVLDHLVIQRMDTTG 944
>gi|340372667|ref|XP_003384865.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like
[Amphimedon queenslandica]
Length = 1669
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 125/504 (24%), Positives = 217/504 (43%), Gaps = 86/504 (17%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFY 162
N I++ G GKT T+ FL + ++ P +++ P S L +W+ EF W
Sbjct: 614 NSVILADEMGLGKTIQTISFLSSLFHIYNLYGPYLVVVPLSTLPSWQREFSLWA------ 667
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL--FEKLV 220
P + N V + D R + ++ W G + + + +E L+
Sbjct: 668 ----PSM-----NTLVYIGDVTSR--------KMIQDTEWAHANGNIKFNVVITTYEILL 710
Query: 221 SGDELSGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ G D+ + V DE H +NDD+ ++K L+ T R++++GTP QN+ +EL
Sbjct: 711 KDKDFLG---DVSWAVLVVDEAHRLKNDDSLLYKTLNMFHTNHRLLVTGTPLQNSLKELW 767
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVN 339
+ + + ++ E KA H D L L +++ P++
Sbjct: 768 SLIHFIMKDKFPSWEEFE----EEHKAYHEG------------DTSNLSSLHQQLEPYLL 811
Query: 340 VHKGTVLQESLPGLRHSVVILQPDEFQKR------------LCKAVEG-----VKSFVEL 382
+++SLP ++ ++ QK+ L K V+G + +EL
Sbjct: 812 RRIKKDVEKSLPSKVEQILRVEMSSVQKQYYRWILTRNYKALSKGVKGSITGFINVLMEL 871
Query: 383 NYC---VSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKV 439
C V ++ + + +S S KL L + L+ L E +V
Sbjct: 872 KKCCNHVYIVRTPDTPEVKDPLQSLLRGSGKLYLLD---------KLLVRLKE--KGHRV 920
Query: 440 LVFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIM 497
L+FSQ + L ++ E ++ R LY +DG ++R+ SI+ N SQ
Sbjct: 921 LIFSQMVRMLDILAEYMKFR-------HFLYQRLDGSITGQQRKESIDHFNAEGSQDFCF 973
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L ST+A G+NL A VV+ D WNP + QA +RA+R+GQ + V++Y +T ++E
Sbjct: 974 LLSTRAGGLGVNLATADTVVIFDSDWNPQNDLQAQARAHRIGQTKQVNIYRFVTRNSVEE 1033
Query: 558 DKLRRQARKVWWSNMVFPSSDGGG 581
D + R RK+ ++V D G
Sbjct: 1034 DIIERAKRKMVLDHLVIQRMDTTG 1057
>gi|158300661|ref|XP_320523.4| AGAP012009-PA [Anopheles gambiae str. PEST]
gi|157013268|gb|EAA00692.4| AGAP012009-PA [Anopheles gambiae str. PEST]
Length = 2037
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 133/540 (24%), Positives = 225/540 (41%), Gaps = 71/540 (13%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-Y 127
++ P+Q EG ++ + A G D I++ G GKT T FL + Y
Sbjct: 772 RLHPYQLEGINWLRYSWANGTD---------------TILADEMGLGKTIQTATFLYSLY 816
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG 187
+ H R ++ P S ++ WE EF+ W D FY + G + + AV +
Sbjct: 817 KEGHCRGPFLVAVPLSTIINWEREFETWAPD--FYCIT---YVGDKESRAVIRENELSFE 871
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND 247
G V + ++ + + +L SY +L+S D +D + V DE H +++
Sbjct: 872 EGAVRGGKASRIRASSIKFNVLLTSY----ELISIDAACLGSIDW-SVLVVDEAHRLKSN 926
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAK 307
+ FK L+ +++L+GTP QNN +EL + L+ ++K+K
Sbjct: 927 QSKFFKVLNAYNIAYKLLLTGTPLQNNLEELFHLLNF------------------LNKSK 968
Query: 308 HASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQK 367
L A+ +E++K L E + P + + +++P +V ++ QK
Sbjct: 969 FNELAEFQNEFADISKEEQVKRLHEMLGPHMLRRLKADVLKNMPTKSEFIVRVELSPLQK 1028
Query: 368 RLCKAV-------------EGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARL 414
+ K + G S + + + HP L E+
Sbjct: 1029 KYYKYILTRNYEALNPKGGGGACSLINIMMDLKKCCNHPYLFAAAAEEAQLGPGGNYELQ 1088
Query: 415 KLDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLI---MEQLRHRFNWREGQEVL 469
L AG K L +L L S +VL+FSQ + L ++ +E L +++
Sbjct: 1089 SLTKAAG-KLVLLEKMLRLLKSQGHRVLIFSQMTKMLDILEDFLEGLGYKYE-------- 1139
Query: 470 YMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVER 529
+DG RQ +I+ N P + L ST+A GINL A V++ D WNP +
Sbjct: 1140 RIDGGITGSIRQEAIDRFNAPGAPQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDI 1199
Query: 530 QAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASE 589
QA SRA+R+GQ V +Y +T ++E + RK+ +++V GG T E
Sbjct: 1200 QAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGTNFTKQE 1259
>gi|255530347|ref|YP_003090719.1| SNF2-like protein [Pedobacter heparinus DSM 2366]
gi|255343331|gb|ACU02657.1| SNF2-related protein [Pedobacter heparinus DSM 2366]
Length = 1130
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 134/518 (25%), Positives = 218/518 (42%), Gaps = 92/518 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
VP + ++ +Q++G W N G + G ++ G GKT +
Sbjct: 664 VPEGLNAELRGYQQDGLN--WLNFLDGFNF-------------GACLADDMGLGKTIQII 708
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
F+ + + +++ P S++ W+ E K+ P L GA L
Sbjct: 709 AFILSQRNKGHQNTNLVVVPASLIFNWQAEVAKFA----------PSLKIHTVYGADRLK 758
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVF-DE 240
D + + ++ L Y G L R + ++F DE
Sbjct: 759 DIHQFDQYEIVLTSY----------GTLLADIRFLKSYYFN-------------YIFLDE 795
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-------RQEFGEVL 293
T +N D +KA+ +++R +++L+GTP +NN +L LS RQ+F E+
Sbjct: 796 SQTIKNPDAQRYKAVRLLQSRNKVVLTGTPIENNTYDLYGQLSFACPGLLGSRQQFKEL- 854
Query: 294 RTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGL 353
+A I +D ++ KEL++KI+PF+ + + LP
Sbjct: 855 --------------YAVPIDQF------KDSKRAKELQKKISPFILRRTKEQVAKELPDK 894
Query: 354 RHSVVILQPDEFQKRLCKA-VEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLA 412
V+ + Q+ + +A V+ +K ++E L +L +SA L
Sbjct: 895 TEMVIYCEMGTEQREVYEAAVQDIKEYIEGKAEDELAKSSMYVLQGITRLRQICNSATL- 953
Query: 413 RLKLDPEAGIKTRFLLILLEL----STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEV 468
LK D G + + +LLE S N K+LVFSQ++ L LI QL R E
Sbjct: 954 -LKDDKFYGNASSKMEVLLEQIESKSPNHKILVFSQFVGMLDLIRAQLGERGIAHE---- 1008
Query: 469 LYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVE 528
Y+ G+ + RQ +N D + + R+ L S KA G+NL A V L+D WNP VE
Sbjct: 1009 -YLTGQ--TRNRQQVVNSFQD-NPEIRVFLISLKAGGVGLNLTRADYVYLVDPWWNPAVE 1064
Query: 529 RQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
QAI R YR+GQ++ V LI +T+E ++ Q K
Sbjct: 1065 NQAIDRTYRIGQEKNVVAVRLICPDTIEEKIMKLQNTK 1102
>gi|397494204|ref|XP_003817975.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein 1 [Pan paniscus]
Length = 1798
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/501 (25%), Positives = 212/501 (42%), Gaps = 77/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 499 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 556
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
N V L D R + + + ++ IL +Y + L
Sbjct: 557 -------------NAVVYLGD--INSRNMIRTHEWTHHQTKRLKFNILLTTYEIL--LKD 599
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+ +EL +
Sbjct: 600 KAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSL 656
Query: 282 LSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
L + E F E GRE A L +++ PF+
Sbjct: 657 LHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHKELEPFL 694
Query: 339 NVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-----FVE 381
+++SLP LR + LQ ++ K L K +G S +E
Sbjct: 695 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 754
Query: 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLV 441
L C + H L+ F L L + + L++ +VL+
Sbjct: 755 LKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRERGNRVLI 809
Query: 442 FSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500
FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+ L S
Sbjct: 810 FSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSEDFCFLLS 863
Query: 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKL 560
T+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T ++E D L
Sbjct: 864 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL 923
Query: 561 RRQARKVWWSNMVFPSSDGGG 581
R +K+ ++V D G
Sbjct: 924 ERAKKKMVLDHLVIQRMDTTG 944
>gi|431520307|ref|ZP_19516590.1| Snf2 family protein [Enterococcus faecium E1634]
gi|430585187|gb|ELB23482.1| Snf2 family protein [Enterococcus faecium E1634]
Length = 1064
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 126/515 (24%), Positives = 221/515 (42%), Gaps = 92/515 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ + M +Q++GF W + G G I++ G GKT T+
Sbjct: 604 LPKGLNATMRDYQKQGFR--WLKMLGHYQF-------------GGILADEMGLGKTLQTI 648
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
FL + + +I+AP S++ W+ E +K+ P LS + ++
Sbjct: 649 AFLLSEKEERKSFSALIVAPASLIYNWQAEVRKFA----------PSLS-------IQVI 691
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
+ K+ R ++ T I SY + ++ + I + DE
Sbjct: 692 NGNKKEREEL----------LAKDTDIRVTSYASLRQDLANYQSQKI-----DYLILDEA 736
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301
+N T +AL + +R LSGTP +NN +EL + + + F + R
Sbjct: 737 QMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLFATIMPGFF----PTKTKFR 792
Query: 302 EISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAPFVNVHKGTVLQESLPGLRH 355
E++ + A +I R R D++ LK+L EK + + + TV L +R
Sbjct: 793 ELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYSALTEEQKTVYLAYLRQMRE 848
Query: 356 SVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLK 415
+ + + F+K + G+ ++ C P+ F E + S KL ++K
Sbjct: 849 EITSMDSEAFKKNRIGILAGLTRLRQI--CCD---------PRLFIEDYQGGSGKLEQVK 897
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
L++ +VL+FSQ+ LT++ E+L G Y+ G
Sbjct: 898 D-----------LLVAAKENKRRVLLFSQFTGMLTILQEELAEL-----GISTFYLRGST 941
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
+ R S ++ N + + + L S KA G+NL GA V+L D+ WNP +E QA RA
Sbjct: 942 KPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTVILYDLWWNPAIEEQAAGRA 999
Query: 536 YRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 1000 HRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1034
>gi|2645429|gb|AAB87381.1| CHD1 [Homo sapiens]
Length = 1709
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/501 (25%), Positives = 212/501 (42%), Gaps = 77/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 499 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 556
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
N V L D R + + + ++ IL +Y + L
Sbjct: 557 -------------NAVVYLGD--INSRNMIRTHEWTHHQTKRLKFNILLTTYEIL--LKD 599
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+ +EL +
Sbjct: 600 KAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSL 656
Query: 282 LSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
L + E F E GRE A L +++ PF+
Sbjct: 657 LHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHKELEPFL 694
Query: 339 NVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-----FVE 381
+++SLP LR + LQ ++ K L K +G S +E
Sbjct: 695 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 754
Query: 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLV 441
L C + H L+ F L L + + L++ +VL+
Sbjct: 755 LKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRERGNRVLI 809
Query: 442 FSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500
FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+ L S
Sbjct: 810 FSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSEDFCFLLS 863
Query: 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKL 560
T+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T ++E D L
Sbjct: 864 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL 923
Query: 561 RRQARKVWWSNMVFPSSDGGG 581
R +K+ ++V D G
Sbjct: 924 ERAKKKMVLDHLVIQRMDTTG 944
>gi|300796537|ref|NP_001178977.1| chromodomain-helicase-DNA-binding protein 1 [Bos taurus]
Length = 1810
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/507 (25%), Positives = 213/507 (42%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 511 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 568
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
N V L G + ++ + W ++ IL +Y +
Sbjct: 569 -------------NAVVYL--------GDINSRNMIRTHEWMHPQTKRLKFNILLTTYEI 607
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
L L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 608 L--LKDKAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 662
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 663 KELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHK 700
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 701 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 760
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + H L+ F L L + + L++
Sbjct: 761 LNIMMELKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRER 815
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 816 GNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSED 869
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 870 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 929
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 930 VEEDILERAKKKMVLDHLVIQRMDTTG 956
>gi|327283577|ref|XP_003226517.1| PREDICTED: chromodomain-helicase-DNA-binding protein 4-like [Anolis
carolinensis]
Length = 1918
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 134/529 (25%), Positives = 230/529 (43%), Gaps = 96/529 (18%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 721 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 765
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV------ALMD 182
+ H + ++ AP S ++ WE EF+ W D+ G +++ A+ + D
Sbjct: 766 EGHSKGPFLVGAPLSTIINWEREFEMWAPDMYVVTY-----VGDKDSRAIIRENEFSFED 820
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFV 237
N RG K ++ K S K F L++ EL I + + G +
Sbjct: 821 NAIRGGKKASKMK--KEASVK------------FHVLLTSYELITIDMAILGSIDWACLI 866
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DE H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L
Sbjct: 867 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFL 926
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
+ +I+K ++++K+L + + P + + +++P +
Sbjct: 927 EEFADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELI 968
Query: 358 VILQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFES 403
V ++ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 969 VRVELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA 1027
Query: 404 FDVDSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLR 457
K+ D A I+ ++ +VL+FSQ + L L+ + L
Sbjct: 1028 -----PKMPNGMFDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLE 1082
Query: 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
H EG + +DG RQ +I+ N P + L ST+A GINL A V+
Sbjct: 1083 H-----EGYKYERIDGGITGNMRQEAIDRFNAPGAPQFCFLLSTRAGGLGINLATADTVI 1137
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+ D WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1138 IYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1185
>gi|239985588|ref|NP_031716.2| chromodomain-helicase-DNA-binding protein 1 [Mus musculus]
gi|341940536|sp|P40201.3|CHD1_MOUSE RecName: Full=Chromodomain-helicase-DNA-binding protein 1;
Short=CHD-1; AltName: Full=ATP-dependent helicase CHD1
gi|109732363|gb|AAI15823.1| Chromodomain helicase DNA binding protein 1 [Mus musculus]
gi|148688507|gb|EDL20454.1| chromodomain helicase DNA binding protein 1 [Mus musculus]
Length = 1711
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/507 (25%), Positives = 213/507 (42%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 497 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 554
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
N V L G + ++ + W ++ IL +Y +
Sbjct: 555 -------------NAVVYL--------GDINSRNMIRTHEWMHPQTKRLKFNILLTTYEI 593
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
L L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 594 L--LKDKAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 648
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 649 KELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHK 686
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 687 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 746
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + H L+ F L L + + L++
Sbjct: 747 LNIMMELKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRER 801
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 802 GNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSED 855
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 856 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 915
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 916 VEEDILERAKKKMVLDHLVIQRMDTTG 942
>gi|431907923|gb|ELK11530.1| Chromodomain-helicase-DNA-binding protein 1 [Pteropus alecto]
Length = 1702
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/507 (25%), Positives = 213/507 (42%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 403 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 460
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
N V L G + ++ + W ++ IL +Y +
Sbjct: 461 -------------NAVVYL--------GDINSRNMIRTHEWMHPQTKRLKFNILLTTYEI 499
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
L L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 500 L--LKDKAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 554
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 555 KELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHK 592
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 593 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 652
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + H L+ F L L + + L++
Sbjct: 653 LNIMMELKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRER 707
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 708 GNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSED 761
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 762 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 821
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 822 VEEDILERAKKKMVLDHLVIQRMDTTG 848
>gi|410949042|ref|XP_003981233.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein 1 [Felis catus]
Length = 1799
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/507 (25%), Positives = 213/507 (42%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 498 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 555
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
N V L G + ++ + W ++ IL +Y +
Sbjct: 556 -------------NAVVYL--------GDINSRNMIRTHEWMHPQTKRLKFNILLTTYEI 594
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
L L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 595 L--LKDKAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 649
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 650 KELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHK 687
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 688 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 747
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + H L+ F L L + + L++
Sbjct: 748 LNIMMELKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRER 802
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 803 GNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSED 856
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 857 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 916
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 917 VEEDILERAKKKMVLDHLVIQRMDTTG 943
>gi|405972247|gb|EKC37026.1| Chromodomain-helicase-DNA-binding protein Mi-2-like protein
[Crassostrea gigas]
Length = 2123
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 139/552 (25%), Positives = 237/552 (42%), Gaps = 82/552 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + + G D I++ G GKT T+VFLQ+ Y
Sbjct: 680 LHPYQLEGVNWLRYSWSNGTD---------------TILADEMGLGKTIQTIVFLQSLYQ 724
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYN-LNKPELSGKENNGAVALMDNRKRG 187
+ H + ++ AP S ++ WE EF+ W D+ + + + +N R
Sbjct: 725 EGHSKGPFLVSAPLSTIINWEREFEFWAPDLYVVTYIGDKDCRSVIREHEFSFEENAIRS 784
Query: 188 RGKVGLIR---YVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTP 244
K ++ VK + +L SY +L+S D +D + V DE H
Sbjct: 785 GAKASKLKSDCQVKFH-------VLLTSY----ELISIDSACLGSVDW-AVLVVDEAHRL 832
Query: 245 RNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREIS 304
+N+ + F+ LS K +++L+GTP QNN +EL + L+ +S
Sbjct: 833 KNNQSKFFRILSNYKIGYKLLLTGTPLQNNLEELFHLLNF------------------LS 874
Query: 305 KAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDE 364
K L + A+ ++++K+L + + P + + + +P +V ++
Sbjct: 875 PDKFNDLTVFLDEFADIAKEDQVKKLHDMLGPHLLRRLKADVLKGMPSKSEFIVRVELSP 934
Query: 365 FQKRLCKAVEGVKSFVELNY----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P + D+ KL
Sbjct: 935 MQKKYYKYIL-TRNFDALNSKGGNQVSLLNIMMDLKKCCNHPYLFP-----TASNDAPKL 988
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
+ A K L LL ++L+FSQ + L ++ + L + EG
Sbjct: 989 PNGMYEGTAMTKACGKLELLSNMMKKLKEKGHRLLIFSQMTKMLDILEDFLEY-----EG 1043
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P + L ST+A GINL A V++ D WNP
Sbjct: 1044 YKYERIDGGITGSMRQDAIDRFNAPDAPQFAFLLSTRAGGLGINLATADTVIIYDSDWNP 1103
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ V +Y +T ++E + +K+ +++V G GN
Sbjct: 1104 HNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERITQVAKKKMMLTHLVV--RPGLGNKGG 1161
Query: 586 TASEPLEDKILE 597
S+ D IL+
Sbjct: 1162 AMSKQELDDILK 1173
>gi|402872166|ref|XP_003900003.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein 1 [Papio anubis]
Length = 1801
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/501 (25%), Positives = 212/501 (42%), Gaps = 77/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 502 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 559
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
N V L D R + + + ++ IL +Y + L
Sbjct: 560 -------------NAVVYLGD--INSRNMIRTHEWTHHQTKRLKFNILLTTYEIL--LKD 602
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+ +EL +
Sbjct: 603 KAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSL 659
Query: 282 LSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
L + E F E GRE A L +++ PF+
Sbjct: 660 LHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHKELEPFL 697
Query: 339 NVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-----FVE 381
+++SLP LR + LQ ++ K L K +G S +E
Sbjct: 698 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 757
Query: 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLV 441
L C + H L+ F L L + + L++ +VL+
Sbjct: 758 LKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRERGNRVLI 812
Query: 442 FSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500
FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+ L S
Sbjct: 813 FSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSEDFCFLLS 866
Query: 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKL 560
T+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T ++E D L
Sbjct: 867 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL 926
Query: 561 RRQARKVWWSNMVFPSSDGGG 581
R +K+ ++V D G
Sbjct: 927 ERAKKKMVLDHLVIQRMDTTG 947
>gi|296485027|tpg|DAA27142.1| TPA: chromodomain helicase DNA binding protein 1-like [Bos taurus]
Length = 1810
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/507 (25%), Positives = 213/507 (42%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 511 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 568
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
N V L G + ++ + W ++ IL +Y +
Sbjct: 569 -------------NAVVYL--------GDINSRNMIRTHEWMHPQTKRLKFNILLTTYEI 607
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
L L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 608 L--LKDKAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 662
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 663 KELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHK 700
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 701 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 760
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + H L+ F L L + + L++
Sbjct: 761 LNIMMELKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRER 815
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 816 GNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSED 869
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 870 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 929
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 930 VEEDILERAKKKMVLDHLVIQRMDTTG 956
>gi|207345463|gb|EDZ72281.1| YGL163Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 405
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 108/395 (27%), Positives = 182/395 (46%), Gaps = 58/395 (14%)
Query: 199 LYSWKMGTG------ILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMF 252
+++W G +L +SY + V D+L + GL + DEGH +N D+ F
Sbjct: 8 IHAWAQAQGRNIVKPVLIISYETLRRNV--DQLKNCNV---GLMLADEGHRLKNGDSLTF 62
Query: 253 KALSRIKTRRRIILSGTPFQNNFQELENTLSLV-------RQEFGEVLRTVRKSGREISK 305
AL I RR+ILSGTP QN+ E LS R EF + GR+ +
Sbjct: 63 TALDSISCPRRVILSGTPIQNDLSEYFALLSFSNPGLLGSRAEFRKNFENPILRGRD-AD 121
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI--LQP- 362
A + + + +L++L ++ F+ +L + LP V+ L+P
Sbjct: 122 ATDKEIT---------KGEAQLQKLSTIVSKFIIRRTNDILAKYLPCKYEHVIFVNLKPL 172
Query: 363 -DEFQKRLCKAVEGVKSFVELNYCVSLLSV--------HPSLLPQQFFESFDV------- 406
+E +L K+ E K + L ++ HP+LL + +
Sbjct: 173 QNELYNKLIKSREVKKVVKGVGGSQPLRAIGILKKLCNHPNLLNFEDEFDDEDDLELPDD 232
Query: 407 -----DSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFN 461
A+ + K + I RFL ++ +++K+++ S Y + L LI + R++
Sbjct: 233 YNMPGSKARDVQTKYSAKFSILERFLH-KIKTESDDKIVLISNYTQTLDLIEKMCRYKH- 290
Query: 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDV 521
+ +DG + KRQ ++ NDP Q I L S+KA GINL+GA+R++L+D
Sbjct: 291 ----YSAVRLDGTMSINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDP 346
Query: 522 VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
WNP ++QA++R +R GQK+ +Y I++ T+E
Sbjct: 347 DWNPAADQQALARVWRDGQKKDCFIYRFISTGTIE 381
>gi|113678140|ref|NP_001038323.1| chromodomain helicase DNA binding protein 4 [Danio rerio]
Length = 1929
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 132/512 (25%), Positives = 227/512 (44%), Gaps = 81/512 (15%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 711 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 755
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV------ALMD 182
+ H + ++ AP S ++ WE EF+ W D+ G +++ AV + +
Sbjct: 756 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY-----VGDKDSRAVIRENEFSFEN 810
Query: 183 NRKRGRGKVGLIR---YVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFD 239
N RG K ++ VK + +L SY +L++ D +D L V D
Sbjct: 811 NAIRGGKKPSKMKKEASVKFH-------VLLTSY----ELITIDTAVLGSIDWACLVV-D 858
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS 299
E H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E
Sbjct: 859 EAHRLKNNQSKFFRILNNYPLQHKLLLTGTPLQNNLEELFHLLNFLTPE----------- 907
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI 359
+ ++L + A+ ++++K+L + + P + + + +P +V
Sbjct: 908 -------RFSNLEGFLEEFADIAKEDQIKKLHDMLGPHMLRRLKADVFKHMPSKTELIVR 960
Query: 360 LQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFD 405
++ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 961 VELSPMQKKYYKFIL-TRNFEALNTRGGGNQVSLLNVVMDLKKCCNHPYLFPAAAMEAAK 1019
Query: 406 VDSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWRE 464
+ + L +G +L +L +VL+FSQ + L L+ + L + E
Sbjct: 1020 MPNGMYEGGGLTKSSGKLLLLQKMLRKLKEGGHRVLIFSQMTKMLDLLEDFLEN-----E 1074
Query: 465 GQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWN 524
G + +DG RQ +I+ N P + + L ST+A GINL A VV+ D WN
Sbjct: 1075 GYKYERIDGGITGGMRQEAIDRFNAPGAPQFVFLLSTRAGGLGINLATADTVVIYDSDWN 1134
Query: 525 PFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
P + QA SRA+R+GQ + V +Y +T ++E
Sbjct: 1135 PHNDIQAFSRAHRIGQNKKVMIYRFVTKASVE 1166
>gi|430836666|ref|ZP_19454643.1| Snf2 family protein [Enterococcus faecium E0680]
gi|430839699|ref|ZP_19457637.1| Snf2 family protein [Enterococcus faecium E0688]
gi|430859513|ref|ZP_19477124.1| Snf2 family protein [Enterococcus faecium E1552]
gi|430487989|gb|ELA64682.1| Snf2 family protein [Enterococcus faecium E0680]
gi|430490435|gb|ELA66960.1| Snf2 family protein [Enterococcus faecium E0688]
gi|430543480|gb|ELA83542.1| Snf2 family protein [Enterococcus faecium E1552]
Length = 1064
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/532 (24%), Positives = 226/532 (42%), Gaps = 93/532 (17%)
Query: 45 QTGCDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGN 104
QT H + +L P+ + M +Q++GF W + G
Sbjct: 588 QTMVQDLIHPERYQAQL-PKGLNATMRDYQKQGFR--WLKMLGHYQF------------- 631
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNL 164
G I++ G GKT T+ FL + + +I+AP S++ W+ E +K+
Sbjct: 632 GGILADEMGLGKTLQTIAFLLSEKEERKSFSALIVAPASLIYNWQAEVRKFA-------- 683
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
P LS + +++ K+ R ++ T I SY + ++ +
Sbjct: 684 --PSLS-------IQVINGNKKEREEL----------LAKDTDIRVTSYASLRQDLANYQ 724
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
I + DE +N T +AL + +R LSGTP +NN +EL + +
Sbjct: 725 SQKI-----DYLILDEAQMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLFAT 779
Query: 285 VRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAPFV 338
+ F + RE++ + A +I R R D++ LK+L EK + +
Sbjct: 780 IMPGFF----PTKTKFRELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYSAL 831
Query: 339 NVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQ 398
+ TV L +R + + + F+K + G+ ++ C P+
Sbjct: 832 TEEQKTVYLAYLRQMREEITSMDSEAFKKNRIGILAGLTRLRQI--CCD---------PR 880
Query: 399 QFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRH 458
F E + S KL ++K L++ +VL+FSQ+ LT++ E+L
Sbjct: 881 LFIEDYQGGSGKLEQVKD-----------LLVAAKENKRRVLLFSQFTGMLTILQEELAE 929
Query: 459 RFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVL 518
G Y+ G + R S ++ N + + + L S KA G+NL GA V+L
Sbjct: 930 L-----GISTFYLRGSTKPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTVIL 982
Query: 519 LDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
D+ WNP +E QA RA+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 983 YDLWWNPAIEEQAAGRAHRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1034
>gi|426230150|ref|XP_004009142.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1 [Ovis aries]
Length = 1710
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/507 (25%), Positives = 213/507 (42%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 497 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 554
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
N V L G + ++ + W ++ IL +Y +
Sbjct: 555 -------------NAVVYL--------GDINSRNMIRTHEWMHPQTKRLKFNILLTTYEI 593
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
L L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 594 L--LKDKAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 648
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 649 KELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHK 686
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 687 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 746
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + H L+ F L L + + L++
Sbjct: 747 LNIMMELKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRER 801
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 802 GNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSED 855
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 856 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 915
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 916 VEEDILERAKKKMVLDHLVIQRMDTTG 942
>gi|395831857|ref|XP_003789001.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1 [Otolemur
garnettii]
Length = 1801
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/507 (25%), Positives = 219/507 (43%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 501 GNNCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 558
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
N V L G + ++ + W ++ IL +Y +
Sbjct: 559 -------------NAVVYL--------GDINSRNMIRTHEWMHPQTKRLKFNILLTTYEI 597
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
L L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 598 L--LKDKAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 652
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 653 KELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHK 690
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 691 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 750
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + + + P E ++ A ++ + + + L+ L E +
Sbjct: 751 LNIMMELKKCCNHCYL---IKPPDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGS 807
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 808 --RVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSED 859
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 860 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 919
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 920 VEEDILERAKKKMVLDHLVIQRMDTTG 946
>gi|301768523|ref|XP_002919680.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1-like
[Ailuropoda melanoleuca]
Length = 1742
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/507 (25%), Positives = 213/507 (42%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 529 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 586
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
N V L G + ++ + W ++ IL +Y +
Sbjct: 587 -------------NAVVYL--------GDINSRNMIRTHEWMHPQTKRLKFNILLTTYEI 625
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
L L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 626 L--LKDKAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 680
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 681 KELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHK 718
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 719 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 778
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + H L+ F L L + + L++
Sbjct: 779 LNIMMELKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRER 833
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 834 GNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSED 887
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 888 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 947
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 948 VEEDILERAKKKMVLDHLVIQRMDTTG 974
>gi|403256189|ref|XP_003920774.1| PREDICTED: chromodomain-helicase-DNA-binding protein 1 [Saimiri
boliviensis boliviensis]
Length = 1713
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/507 (25%), Positives = 213/507 (42%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 500 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 557
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
N V L G + ++ + W ++ IL +Y +
Sbjct: 558 -------------NAVVYL--------GDINSRNMIRTHEWMHPQTKRLKFNILLTTYEI 596
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
L L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 597 L--LKDKAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 651
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 652 KELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHK 689
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 690 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 749
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + H L+ F L L + + L++
Sbjct: 750 LNIMMELKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRER 804
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 805 GNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSED 858
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 859 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 918
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 919 VEEDILERAKKKMVLDHLVIQRMDTTG 945
>gi|224147596|ref|XP_002336506.1| hypothetical protein POPTRDRAFT_592433 [Populus trichocarpa]
gi|222835795|gb|EEE74230.1| hypothetical protein POPTRDRAFT_592433 [Populus trichocarpa]
Length = 387
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 136/252 (53%), Gaps = 13/252 (5%)
Query: 327 LKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCV 386
+++L+E + ++ +KG L E LPGL V+L QK + ++ + +
Sbjct: 53 IRDLREMTSKVLHYYKGDFLDE-LPGLVDFTVVLNLSSKQKHEVQKLKKFAGKFKRSSVG 111
Query: 387 SLLSVHPSLLPQQFFESFDVDSAKLARL--KLDPEAGIKTRFLLILLEL--STNEKVLVF 442
S + +HP L F E+ V + L LD G K +F L +L L S EK+LVF
Sbjct: 112 SAVYLHPKL--HSFSENSAVTDDMMDNLLETLDVRDGAKAKFFLNILSLCKSAGEKLLVF 169
Query: 443 SQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTK 502
SQY+ PL + + W G+++ + G+ R+ S++ N+ S A++ S K
Sbjct: 170 SQYLTPLKFLERLVMKVKGWILGKDIFVISGESSSDHREWSMDRFNN-SIDAKVFFGSIK 228
Query: 503 ACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK--- 559
AC EGI+LVGASR+++LDV NP V RQAI RA+R GQ + V+ Y L+ +++ E +
Sbjct: 229 ACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVYAYRLVAADSPEEEDHTT 288
Query: 560 -LRRQA-RKVWW 569
R++A K+W+
Sbjct: 289 CFRKEAIAKMWF 300
>gi|145353082|ref|XP_001420858.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581093|gb|ABO99151.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 522
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 132/500 (26%), Positives = 213/500 (42%), Gaps = 80/500 (16%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G CI++ G GKT ++ FL ++ H +++ P S+L +W +E +KW
Sbjct: 24 GCSCILADEMGLGKTLQSISFLACIKEMRHANGPHLVVCPLSVLSSWMDELQKWAPSFRV 83
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKV--GLIRY-VKLYSWKMGTGILGLSYRLFEK 218
L+ SG EN R R R +V Y V + +++M + L +K
Sbjct: 84 VRLH----SGDENE--------RVRLRKEVVPNTESYDVAVTTYEMACNP-AFNVTLTQK 130
Query: 219 LVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
+ + + DEGH +N++T + L RIK + ++L+GTP QNN EL
Sbjct: 131 V------------MWRCLILDEGHRVKNEETAAHQVLKRIKRQHTLLLTGTPIQNNLHEL 178
Query: 279 ENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIA-PF 337
LS + + V S KA + + + H+ D L E + PF
Sbjct: 179 YAILSFLHPD-------VFTSSEPFDKAFNLN-------TSEHKVDSNLLEKAHFLMRPF 224
Query: 338 VNVHKGTVLQESLPGLRHSVVILQPDEFQ------------------KRLCKAVEGVKSF 379
+ ++ SLP + ++ E Q ++ K G +F
Sbjct: 225 ILRRVKGEVEVSLPPKTETKIMCPLSEAQTFWYRRLLLREATALQSLEKATKGEGGADNF 284
Query: 380 VELNYCVSLL---SVHPSLLPQQFFESFDVDSAKLARLKLDPEAG---IKTRFLLILLEL 433
+LN + L HP L F DV + L +G + R L L E
Sbjct: 285 QKLNSLLMQLRKCCNHPFL-----FTGTDVPEDGVPIEDLISASGKLAVLDRMLQKLKE- 338
Query: 434 STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQ 493
+V++FSQ+ L ++ + L R G +DG + +R I N P S
Sbjct: 339 -GGHRVVLFSQFTSMLDILQDFLTLR-----GYTYARLDGSTNRVQRSIDIAAFNRPDSP 392
Query: 494 ARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553
L ST+A G+NL A +L D WNP V+ QA++R +R+GQK++VH+Y L+T+
Sbjct: 393 MFAFLLSTRAGGLGVNLQTADTCILFDSDWNPQVDLQAMARVHRIGQKKMVHIYRLVTAG 452
Query: 554 TLEWDKLRRQARKVWWSNMV 573
T+E +R +K++ MV
Sbjct: 453 TVEERMTQRAEKKLFLDQMV 472
>gi|455015|gb|AAB08486.1| DNA-binding protein [Mus musculus]
Length = 1711
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 130/507 (25%), Positives = 213/507 (42%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 497 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 554
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
N V L G + ++ + W ++ IL +Y +
Sbjct: 555 -------------NAVVYL--------GDINSRNMIRTHEWMHPQTKRLKFNILLTTYEI 593
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
L L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 594 L--LKDKAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 648
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 649 KELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHK 686
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 687 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 746
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + H L+ F L L + + L++
Sbjct: 747 LNIMMELKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRER 801
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 802 GNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSED 855
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 856 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 915
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 916 VEEDILERAKKKMVLDHLVIQRMDTTG 942
>gi|145484966|ref|XP_001428492.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124395578|emb|CAK61094.1| unnamed protein product [Paramecium tetraurelia]
Length = 1405
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 131/515 (25%), Positives = 229/515 (44%), Gaps = 83/515 (16%)
Query: 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRP--VIIAPRSMLLTWEEEFKKWGIDIPFYNL 164
+++ G GKT ++ FL + + CR +IIAP S L W+ + W +L
Sbjct: 474 LLADEMGLGKTIQSIAFLNHLVSMES-CRGPFLIIAPLSTLQHWKRSCEDWT------SL 526
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKM------GTGILGLSYRLFEK 218
N AV D + G+ G + ++ Y W G + F+
Sbjct: 527 N-----------AVLYYDQQ----GQPGR-QAIRDYEWFYTDISLKGNTLPSQELYKFQI 570
Query: 219 LVSGDEL-----SGILLDLPGLFVF-DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
L++ E+ S + +P F+ DE H +N + + +L R+ R +IL+GTP Q
Sbjct: 571 LITSFEVFNQDHSTYIQQIPFQFIIVDEAHRLKNQNAKILASLKRLVCSRIMILTGTPVQ 630
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + L + +++ A E++++L +
Sbjct: 631 NNPEELWSLLNFIEPYQFPNLNQFKSQFGDLNTA------------------EQIEKLNK 672
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKA---------VEG-------V 376
+ P++ + +++S+P L+ +++ ++ QK L +A ++G +
Sbjct: 673 TLKPYILRRQKEDVEQSIPPLQENIIDVELTNVQKTLYRALYERNKSALIQGFSQQTAQI 732
Query: 377 KSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARL-KLDPEAGIKTRFLLILLE--L 433
S L+ + L HP LL + + + K+ E K L +L+ L
Sbjct: 733 ASLNNLDMHLRKLCNHPLLLKEMHSDILEKSKGNEGEYQKILIEYSGKMVLLDKMLKKFL 792
Query: 434 STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKK--RQSSINVLNDPS 491
++K+L+FSQ+ L L+ E L+ FN ++ Y D+K+ RQ++I+ ND
Sbjct: 793 KEDKKMLIFSQFTNMLALLEEYLQ--FN-----QIKYEKITGDIKQIDRQNAIDRFNDQK 845
Query: 492 SQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLIT 551
++ L STKA +GINL A VV+ D WNP + QA +RA+R+GQ + V VY IT
Sbjct: 846 KGRQVFLLSTKAGGQGINLTAAEIVVIFDSDWNPQNDIQATARAHRIGQDKQVTVYRFIT 905
Query: 552 SETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTT 586
T E R K+ +F + + +DQT
Sbjct: 906 KNTYEAKMFERAFAKLGLDQAIFMNGEFKSSDQTN 940
>gi|431468362|ref|ZP_19514391.1| Snf2 family protein [Enterococcus faecium E1630]
gi|431760937|ref|ZP_19549528.1| Snf2 family protein [Enterococcus faecium E3346]
gi|430584039|gb|ELB22390.1| Snf2 family protein [Enterococcus faecium E1630]
gi|430623216|gb|ELB59916.1| Snf2 family protein [Enterococcus faecium E3346]
Length = 1064
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 126/515 (24%), Positives = 221/515 (42%), Gaps = 92/515 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ + M +Q++GF W + G G I++ G GKT T+
Sbjct: 604 LPKGLNATMRDYQKQGFR--WLKMLGHYQF-------------GGILADEMGLGKTLQTI 648
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
FL + + +I+AP S++ W+ E +K+ P LS + ++
Sbjct: 649 AFLLSEKEERKSFSALIVAPASLIYNWQAEVRKFA----------PSLS-------IQVI 691
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
+ K+ R ++ T I SY + ++ + I + DE
Sbjct: 692 NGNKKEREEL----------LAKDTDIRVTSYASLRQDLANYQSQKI-----DYLILDEA 736
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301
+N T +AL + +R LSGTP +NN +EL + + + F + R
Sbjct: 737 QMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLFATIMPGFF----PTKTKFR 792
Query: 302 EISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAPFVNVHKGTVLQESLPGLRH 355
E++ + A +I R R D++ LK+L EK + + + TV L +R
Sbjct: 793 ELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYSALTEEQKTVYLAYLRQMRE 848
Query: 356 SVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLK 415
+ + + F+K + G+ ++ C P+ F E + S KL ++K
Sbjct: 849 EITSMDSEAFKKNRIGILAGLTRLRQI--CCD---------PRLFIEDYQGGSGKLEQVK 897
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
L++ +VL+FSQ+ LT++ E+L G Y+ G
Sbjct: 898 D-----------LLVAAKENKRRVLLFSQFTGMLTILQEELAEL-----GISTFYLRGST 941
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
+ R S ++ N + + + L S KA G+NL GA V+L D+ WNP +E QA RA
Sbjct: 942 KPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTVILYDLWWNPAIEEQAAGRA 999
Query: 536 YRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 1000 HRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1034
>gi|255565329|ref|XP_002523656.1| chromodomain helicase DNA binding protein, putative [Ricinus
communis]
gi|223537108|gb|EEF38742.1| chromodomain helicase DNA binding protein, putative [Ricinus
communis]
Length = 2257
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 145/579 (25%), Positives = 249/579 (43%), Gaps = 97/579 (16%)
Query: 56 GTVWELVPRDVRK-KMFPHQREGFEFI---WKNIAGGIDLDELKNSTSTGGGNGCIISHA 111
GT+ E P++++ +FPHQ E ++ W I DE+
Sbjct: 657 GTLTE-QPKELKGGSLFPHQLEALNWLRRCWHKSKNVILADEM----------------- 698
Query: 112 PGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELS 170
G GKT FL + Y + +++ P S + W EF W NLN E
Sbjct: 699 -GLGKTVSACAFLSSLYFEFRASLPCLVLVPLSTMPNWLAEFALWAP-----NLNVVEYH 752
Query: 171 GKENNGAV------ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
G A+ D +K + K S+K +L +Y + L
Sbjct: 753 GCAKARAIIRQYEWHASDPKKTNQ---------KTASYKFN--VLLTTYEMV--LADSSH 799
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
L G+ ++ V DEGH +N + +F L+ + R++L+GTP QNN E+ N L+
Sbjct: 800 LRGVPWEV---LVVDEGHRLKNSGSKLFSLLNTFSFQHRVLLTGTPLQNNIGEMYNLLNF 856
Query: 285 VRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP-FVNVHKG 343
++ L + + +++ A EK++ELK+ +AP + K
Sbjct: 857 LQPASFPSLSSFEEKFNDLTTA------------------EKVEELKKLVAPHMLRRLKK 898
Query: 344 TVLQESLPGLRHSVVI----LQPDEFQKRLCKAVE-------GVKSFVELNYCVSLLSV- 391
+Q P V + +Q + ++ L K + GV LN + L +
Sbjct: 899 DAMQNIPPKTERMVPVELTSIQAEYYRAMLTKNYQILRNIGKGVPQQSMLNIVMQLRKIC 958
Query: 392 -HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLT 450
HP L+P +S V+ R+K + + L L + +VL+FSQ + L
Sbjct: 959 NHPYLIPGTEPDSGSVEFLHEMRIKASAKLTVLHSMLKALYK--EGHRVLIFSQMTKLLD 1016
Query: 451 LIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINL 510
++ + L F + + V DG V RQ+SI+ N S+ + L ST++C GINL
Sbjct: 1017 VLEDYLTIEFGPKTYERV---DGSVSVSDRQASISRFNQDKSRF-VFLLSTRSCGLGINL 1072
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS 570
A VV+ D +NP + QA++RA+R+GQ + VY L+ ++E +++ + A+K
Sbjct: 1073 ATADTVVIYDSDFNPHADIQAMNRAHRIGQSNRLLVYRLVVRASVE-ERILQLAKKKLML 1131
Query: 571 NMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSET 609
+ +F + G + + +ED + +L+++PS T
Sbjct: 1132 DQLFVNKSG-------SQKEVEDILRWGTEELFSDPSRT 1163
>gi|167383963|ref|XP_001736758.1| helicase [Entamoeba dispar SAW760]
gi|165900796|gb|EDR27036.1| helicase, putative [Entamoeba dispar SAW760]
Length = 954
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 139/517 (26%), Positives = 217/517 (41%), Gaps = 79/517 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR--PVIIAPRSMLLTWEEEFKKWGIDIP 160
G I++ G GKT L + L Y+ C ++I+P+S + W+ E KW I
Sbjct: 123 GVNSILADEMGLGKT-LESISLLGYLYHVQDCHGPHIVISPKSTIDNWKNEINKWLPSI- 180
Query: 161 FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV 220
VALM + R R ++ ++ SY++ K
Sbjct: 181 ----------------KVALMGGTRESREDC---RKENFDKDRLKADVIICSYQVISK-- 219
Query: 221 SGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELEN 280
E S + + DE H+ +N++T + LS I ++ L+GTP QN EL +
Sbjct: 220 ---EKSLLKKQKFVYLILDEAHSAKNENTRFYNDLSEINATHKLFLTGTPLQNTLHELWS 276
Query: 281 TLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNV 340
L + E ++ + + I K I SI ++ I PF+
Sbjct: 277 LLQFLLPEIFN-MKELDEIFESIESDKFQGYIDSI---------------RDFIKPFMLR 320
Query: 341 HKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV-----------EGVKSFVELNYCVSLL 389
T +Q+ LP + +Q FQK + V + VKS +LN ++ L
Sbjct: 321 RLKTDVQKELPPKMEIKIFVQLTPFQKVWYRKVLMGDVTVIIGDKVVKS--KLNNTMTQL 378
Query: 390 SV---HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYI 446
HP L+P E + V+ L A + L+ L N K+L+FSQ
Sbjct: 379 RKVCDHPYLMPGAEPEPY-VNGEHLCL----SSAKMIVMEKLVEKHLKNNGKILIFSQMT 433
Query: 447 EPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCE 506
L +I + L + E +DG+ + R IN NDP+ + I L ST++
Sbjct: 434 RMLDIIDDYLVFK-----EIEHYRIDGQTQQEDRVEQINDFNDPNGKVSIFLLSTRSGGL 488
Query: 507 GINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
GINL A V+L D WNP + QA+ RA+R+GQ + V VY LI T E +R RK
Sbjct: 489 GINLQSADTVILYDSDWNPQSDIQAMDRAHRIGQTKPVTVYRLICEGTAEQRLIRVAERK 548
Query: 567 VWWSNMVFPSSDGGGNDQTTASEPL--EDKILEEMAQ 601
+ + +V S TA+EP ++++L+ M Q
Sbjct: 549 LMLNRLVMQSG-------KTATEPAIGKEELLQIMQQ 578
>gi|358399258|gb|EHK48601.1| hypothetical protein TRIATDRAFT_53490 [Trichoderma atroviride IMI
206040]
Length = 1133
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 144/543 (26%), Positives = 228/543 (41%), Gaps = 81/543 (14%)
Query: 62 VPRDVRKKMFPHQREGFEFI---WKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
+P D+ +F +Q+ G +++ +K GGI DE+ G GKT
Sbjct: 365 LPGDIYPSLFGYQKTGVQWLAELYKQSVGGIIGDEM------------------GLGKTV 406
Query: 119 LTLVFLQAYMKLHPRCRPVII-APRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGA 177
+ F+ A +PVI+ AP ++L W EF +W + L+ SG N A
Sbjct: 407 QLIAFIAALHYSKKLKKPVIVVAPATLLRQWVSEFHRWWPPLRVSILHSSG-SGMLNPTA 465
Query: 178 VALMD-------NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILL 230
D K + +++ V + T GL DEL +
Sbjct: 466 EDEYDVEHFSPMATKSEKAARKIVKGVVQKGHVLVTTYTGLQ-------TYADELLHVEW 518
Query: 231 DLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR-QEF 289
D V DEGH RN + + + T R+ILSGTP QNN EL + +
Sbjct: 519 DYA---VLDEGHKIRNPNAEITVTCKELNTPNRVILSGTPVQNNLTELWSLFDFIYPMRL 575
Query: 290 GEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTV 345
G ++ ++ I + +A+ + + +CA + LKE I+ ++
Sbjct: 576 GTLVNFKQQFEIPIRQGGYANASNLQVMTAEKCA--------EALKETISEYLLQRLKVD 627
Query: 346 LQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVE-LN------YCVSLLSV---HPSL 395
+ LP V+ + E Q++ + G LN Y + +L HP L
Sbjct: 628 VAADLPEKTEQVLFCKLTESQRKAYERFIGSDEVAAILNRKRQSLYGIDILRKICNHPDL 687
Query: 396 LPQQFFE--SFDVDSAKL-ARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLI 452
L + +D KL A+L+L T+ LL + + K+L+FSQ + L +I
Sbjct: 688 LDKSLPSKPGYDYGDPKLSAKLQL-------TKDLLQKVMIPNGHKMLLFSQGKQMLNII 740
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGINLV 511
+ +R G L MDG+ + +RQ I+ N DP + L +T+ G NL
Sbjct: 741 EKCIREC-----GISYLRMDGETPIDQRQPMIDKFNTDPD--IHVFLMTTRTGGLGTNLT 793
Query: 512 GASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSN 571
GA R+++ D WNP + QA RA+RLGQ + V +Y L+T T+E RQ K + +N
Sbjct: 794 GADRIIIFDPDWNPSTDLQARERAWRLGQSKPVKIYRLMTEGTIEEKIYHRQIFKQFMTN 853
Query: 572 MVF 574
V
Sbjct: 854 KVL 856
>gi|320038964|gb|EFW20899.1| DNA repair and recombination protein RAD26 [Coccidioides posadasii
str. Silveira]
Length = 961
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 142/551 (25%), Positives = 233/551 (42%), Gaps = 104/551 (18%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQREG +F+++ + G + G G I++ G GKT T+ L
Sbjct: 305 KHLREHQREGVKFLYECVMGMRPFN----------GEGAILADEMGLGKTLQTIALLWTL 354
Query: 128 MKLHP--RCRPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
MK +P PV I+ P +++ W++EF+KW
Sbjct: 355 MKQNPIYGASPVVKKALIVCPVTLIKNWQKEFRKW------------------------- 389
Query: 181 MDNRKRGRGKVGLI----RYVKLYSWKMGTGILGLSYRL----FEKLVSGDE--LSGILL 230
G ++G+ ++++L + MG +SY + +E+L + E G +
Sbjct: 390 -----LGNDRLGVFVADGKHMRLTDFTMG-----MSYNVMIIGYERLRTVQEELAKGRGI 439
Query: 231 DLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFG 290
D+ + DEGH + +A+ + T RRIILSGTP QN+ E + V
Sbjct: 440 DI---VIADEGHRLKTVQNKSAQAIQSLNTARRIILSGTPIQNDLSEFFAMVDFVNPGL- 495
Query: 291 EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIA----PFVNVHKGTVL 346
L T + +E ++ S A+ +D EK + E++A F+ +L
Sbjct: 496 --LGTFKMFMKEF----EGPIVKSRQPGASKKDIEKGEARSEELAGLTSKFILRRTADIL 549
Query: 347 QESLPGLRHSVVILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSVHPSLL 396
+ LP ++ P Q + + A+ +S ++L + L PSLL
Sbjct: 550 SKHLPPKTEYILFCNPTPAQANIYRHVIASPIFQSALGNSESALQLITILKKLCNSPSLL 609
Query: 397 PQQFFESFDVD---SAKLARL------KLDPEAGIKTRFLLILLE---LSTNEKVLVFSQ 444
+ + + + S+ ++ L P + K R L LL +T+EK+++ S
Sbjct: 610 TLKVLKDENPNCTISSLISTLPPNLLRHFSPASSGKIRVLDQLLHNLHSTTSEKIVLVSN 669
Query: 445 YIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI-MLASTKA 503
Y L L +DG KRQ ++ N SS++ L S KA
Sbjct: 670 YTS-----TLNLLAALLSSLSLPYLRLDGSTPASKRQFLVDDFNRSSSKSCFAFLLSAKA 724
Query: 504 CCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQ 563
G+NL GASR+VL DV WNP + QA++R +R GQKR H+Y ++ LE +RQ
Sbjct: 725 GGIGLNLTGASRLVLFDVDWNPATDIQAMARIHRDGQKRHCHIYRMLLRGGLEEKIWQRQ 784
Query: 564 ARKVWWSNMVF 574
K+ S+ V
Sbjct: 785 VTKLGLSDSVM 795
>gi|431381402|ref|ZP_19511004.1| Snf2 family protein [Enterococcus faecium E1627]
gi|430581764|gb|ELB20202.1| Snf2 family protein [Enterococcus faecium E1627]
Length = 1064
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 126/515 (24%), Positives = 221/515 (42%), Gaps = 92/515 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ + M +Q++GF W + G G I++ G GKT T+
Sbjct: 604 LPKGLNATMRDYQKQGFR--WLKMLGHYQF-------------GGILADEMGLGKTLQTI 648
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
FL + + +I+AP S++ W+ E +K+ P LS + ++
Sbjct: 649 AFLLSEKEERKSFSALIVAPASLIYNWQAEVRKFA----------PSLS-------IQVI 691
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
+ K+ R ++ T I SY + ++ + I + DE
Sbjct: 692 NGNKKEREEL----------LAKDTDIRVTSYASLRQDLANYQSQKI-----DYLILDEA 736
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301
+N T +AL + +R LSGTP +NN +EL + + + F + R
Sbjct: 737 QMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLFATIMPGFF----PTKTKFR 792
Query: 302 EISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAPFVNVHKGTVLQESLPGLRH 355
E++ + A +I R R D++ LK+L EK + + + TV L +R
Sbjct: 793 ELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYSALTEEQKTVYLAYLRQMRE 848
Query: 356 SVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLK 415
+ + + F+K + G+ ++ C P+ F E + S KL ++K
Sbjct: 849 EITSMDSEAFKKNRIGILAGLTRLRQI--CCD---------PRLFIEDYQGGSGKLEQVK 897
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
L++ +VL+FSQ+ LT++ E+L G Y+ G
Sbjct: 898 D-----------LLVAAKENKRRVLLFSQFTGMLTILQEELAEL-----GISTFYLRGST 941
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
+ R S ++ N + + + L S KA G+NL GA V+L D+ WNP +E QA RA
Sbjct: 942 KPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTVILYDLWWNPAIEEQAAGRA 999
Query: 536 YRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 1000 HRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1034
>gi|300811728|ref|ZP_07092202.1| SNF2 family N-terminal domain protein [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|300497304|gb|EFK32352.1| SNF2 family N-terminal domain protein [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
Length = 1185
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 129/474 (27%), Positives = 205/474 (43%), Gaps = 91/474 (19%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFY 162
G G I++ G GKT L ++ L A K P +I+AP S++L WE EFKK+ ++
Sbjct: 745 GFGGILADEMGLGKT-LQVISLLASQKDQP---SLIVAPASLVLNWEAEFKKFAPEMKTL 800
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222
L+ S KE +G +A + + ++ SY L ++ ++
Sbjct: 801 VLSG---SKKERSGQLADLTD----------------------IDVVITSYDLLKRDITN 835
Query: 223 DELSGILLDLPGLF---VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
E P F V DE +N T KA+S +K + R L+GTP +N EL
Sbjct: 836 YE--------PHTFAYEVIDEAQMIKNPRTAAAKAVSVVKAKHRFALTGTPIENRLSELW 887
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVN 339
+ + V F KS RE K + ++ D + L L + + PF+
Sbjct: 888 SIFNFVMPGF-------LKSYREFKKDFESPIV-------KEDDQDCLNRLSQMVGPFIL 933
Query: 340 VHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV-------------EGVKSFVELNYCV 386
+ + LP V + + Q++L A EG+K ++
Sbjct: 934 RRLKKDVLKDLPDKLEEVRYVGMGKEQRKLYDAEIARLKNKVMAEDDEGIKR-EQIEILA 992
Query: 387 SLLSVHPSLL-PQQFFESFDVDSAK-LARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQ 444
+L + P +E + +S K LA + L A + KVL+FSQ
Sbjct: 993 ALTRIREICCDPGLLYEDYKGESEKRLACVDLIKSA------------IDGGHKVLLFSQ 1040
Query: 445 YIEPLTLIMEQLRHRFNWREGQEVLYM--DGKQDVKKRQSSINVLNDPSSQARIMLASTK 502
+ L L+ E L+ +E++++ DG+ KR + +NV N S A++ L S K
Sbjct: 1041 FTSMLDLLEESLK-------AEEIVFLRIDGQTPKAKRLTLVNVFNHKDSPAKVFLISLK 1093
Query: 503 ACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
A G+NL GA V+ D WN + QA RA+R+GQ++ V VY LI +T+E
Sbjct: 1094 AGGTGLNLTGADTVIHYDPWWNVAAQNQATDRAHRIGQEKKVTVYKLIAKDTVE 1147
>gi|257880309|ref|ZP_05659962.1| Snf2 family protein [Enterococcus faecium 1,230,933]
gi|257890968|ref|ZP_05670621.1| Snf2 family protein [Enterococcus faecium 1,231,410]
gi|257894223|ref|ZP_05673876.1| Snf2 family protein [Enterococcus faecium 1,231,408]
gi|257814537|gb|EEV43295.1| Snf2 family protein [Enterococcus faecium 1,230,933]
gi|257827328|gb|EEV53954.1| Snf2 family protein [Enterococcus faecium 1,231,410]
gi|257830602|gb|EEV57209.1| Snf2 family protein [Enterococcus faecium 1,231,408]
Length = 1067
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 126/515 (24%), Positives = 221/515 (42%), Gaps = 92/515 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ + M +Q++GF W + G G I++ G GKT T+
Sbjct: 607 LPKGLNATMRDYQKQGFR--WLKMLGHYQF-------------GGILADEMGLGKTLQTI 651
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
FL + + +I+AP S++ W+ E +K+ P LS + ++
Sbjct: 652 AFLLSEKEERKSFSALIVAPASLIYNWQAEVRKFA----------PSLS-------IQVI 694
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
+ K+ R ++ T I SY + ++ + I + DE
Sbjct: 695 NGNKKEREEL----------LAKDTDIRVTSYASLRQDLANYQSQKI-----DYLILDEA 739
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301
+N T +AL + +R LSGTP +NN +EL + + + F + R
Sbjct: 740 QMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLFATIMPGFF----PTKTKFR 795
Query: 302 EISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAPFVNVHKGTVLQESLPGLRH 355
E++ + A +I R R D++ LK+L EK + + + TV L +R
Sbjct: 796 ELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYSALTEEQKTVYLAYLRQMRE 851
Query: 356 SVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLK 415
+ + + F+K + G+ ++ C P+ F E + S KL ++K
Sbjct: 852 EITSMDSEAFKKNRIGILAGLTRLRQI--CCD---------PRLFIEDYQGGSGKLEQVK 900
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
L++ +VL+FSQ+ LT++ E+L G Y+ G
Sbjct: 901 D-----------LLVAAKENKRRVLLFSQFTGMLTILQEELAEL-----GISTFYLRGST 944
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
+ R S ++ N + + + L S KA G+NL GA V+L D+ WNP +E QA RA
Sbjct: 945 KPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTVILYDLWWNPAIEEQAAGRA 1002
Query: 536 YRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 1003 HRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1037
>gi|317418651|emb|CBN80689.1| Chromodomain-helicase-DNA-binding protein 5 [Dicentrarchus labrax]
Length = 1981
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 134/525 (25%), Positives = 231/525 (44%), Gaps = 73/525 (13%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 683 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 727
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGR 188
+ H + ++ AP S ++ WE EF+ W D FY + +G +++ A+ +
Sbjct: 728 EGHSKGPFLVSAPLSTIINWEREFEMWAPD--FYVVT---YTGDKDSRAIIRENEFTFED 782
Query: 189 GKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDEGHT 243
V R K++ K T I F L++ EL I + G V DE H
Sbjct: 783 SAVKSGR--KVFRMKKDTPIK------FHVLLTSYELITIDQAILGSITWACLVVDEAHR 834
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREI 303
+N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +I
Sbjct: 835 LKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADI 894
Query: 304 SKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPD 363
SK ++++K+L + + P + + +++P +V ++
Sbjct: 895 SK------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELS 936
Query: 364 EFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSA 409
QK+ K + ++F LN VSLL++ HP L P E+ + +
Sbjct: 937 PMQKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNG 995
Query: 410 KL-ARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEV 468
L + + ++ +VL+FSQ + L L+ + L EG +
Sbjct: 996 SYDGNLLVKSSGKLTLLQKMLKKLKDEGHRVLIFSQMTKMLDLLEDFLEF-----EGYKY 1050
Query: 469 LYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVE 528
+DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP +
Sbjct: 1051 ERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLASADTVIIYDSDWNPHND 1110
Query: 529 RQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
QA SRA+R+GQ + V +Y +T ++E + RK+ +++V
Sbjct: 1111 IQAFSRAHRIGQNKKVMIYRFVTRGSVEERITQVAKRKMMLTHLV 1155
>gi|46447008|ref|YP_008373.1| hypothetical protein pc1374 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400649|emb|CAF24098.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila
UWE25]
Length = 1161
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 139/523 (26%), Positives = 216/523 (41%), Gaps = 98/523 (18%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ ++ + +Q +G W N G+ L NG I++ G GKT +
Sbjct: 690 IPKSIKASLRNYQIDGIH--WLNRLRGMHL------------NG-ILADDMGLGKTLQAI 734
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
+ L Y HP+ +++ P S++ W+EE K+ P+L V +
Sbjct: 735 ITLTQYKMDHPKQPSIVVCPTSLVYNWQEEITKFN----------PKLK-------VLPV 777
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDE 240
D R K L+ + Y ++ SY L +K + +P G + DE
Sbjct: 778 DGNPSQRKK--LLNDLDYYD------VIITSYTLLQKDIE------FYKTVPFGYIILDE 823
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
+N T +++ I+ R+IL+GTP +N+ +EL + + +
Sbjct: 824 AQHIKNRGTRNAQSVKMIQAAHRLILTGTPIENSLEELWSLFDFLMPGL------LSSYD 877
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
R + K S IS G+ L L+ K+APF+ + + LP + V
Sbjct: 878 RFVEKYIRQSTISQGGK--------NLDNLRRKVAPFILRRMKKDVLDDLPPVSEIVYHC 929
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDS-AKLARLKL--- 416
Q+ L ++ Y S L+ ++ FE + A L RLK
Sbjct: 930 HLSNIQQELYRS-----------YAASAREELSQLVKKEGFERVQIHVLATLTRLKQICC 978
Query: 417 --------DPEAGIKTRFLLILLELST----NEKVLVFSQYIEPLTLIMEQLRHRFNWRE 464
PE G +++ ++L L T K ++FSQY L ++ E L ++
Sbjct: 979 HPAIFAKDRPENGDSSKYEMLLELLQTLMESKHKTVIFSQYTRMLNIMREDLE-----KQ 1033
Query: 465 GQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGINLVGASRVVLLDVVW 523
G Y+DG K R S + N DP+ I L S KA G+NLVGA V+ D+ W
Sbjct: 1034 GIRFEYLDGSS--KNRLSIVKKFNEDPN--IPIFLVSLKAGGSGLNLVGADTVIHYDMWW 1089
Query: 524 NPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
NP VE QA R +RLGQK V Y LIT T+E L RK
Sbjct: 1090 NPAVENQATDRVHRLGQKNSVSSYKLITLNTIEEKILELHNRK 1132
>gi|350639251|gb|EHA27605.1| hypothetical protein ASPNIDRAFT_184433 [Aspergillus niger ATCC
1015]
Length = 1179
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 142/507 (28%), Positives = 223/507 (43%), Gaps = 73/507 (14%)
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA-PRSMLLTWEEEFKKWGIDIPFYN 163
G II G GKT + FL RPVI+ P +++ W EF +W P +
Sbjct: 425 GGIIGDEMGLGKTIQVISFLAGLHYSKKLTRPVIVVCPATVMKQWVNEFHRW---WPPFR 481
Query: 164 LNKPELSG-------KENNGAVALMD---NRKRGRG-KVGLIRYVKLYSWKMGTG-ILGL 211
++ SG E++ AL+ N RG GL K+ + G +L
Sbjct: 482 VSILHTSGSGMVNIRNESSREDALLSQAWNASSTRGMPSGLKAARKVVKRVVEEGHVLVT 541
Query: 212 SYRLFEKLVSGDELSGILLDLP---GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSG 268
+Y + S L +P G V DEGH RN +T + ++T RIILSG
Sbjct: 542 TYSGLQTYAS--------LVIPIEWGCAVLDEGHKIRNPNTSITIHCKELRTPHRIILSG 593
Query: 269 TPFQNNFQELENTLSLV-RQEFGEVLRTVRKSGREISKAKHASL----ISSIGRCANHRD 323
TP QNN EL + V G ++ + I + +A+ + + +CA
Sbjct: 594 TPMQNNLTELWSLFDFVFPMRLGTLVNFRNQFEFPIRQGGYANASNLQVQTAAKCA---- 649
Query: 324 DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV---EGVKSFV 380
+ LK+ I+P++ + LP V+ + + Q++ +A E +KS +
Sbjct: 650 ----ETLKDAISPYLLQRFKIDVAADLPKKSEQVLFCKLTKPQRQAYEAFLGSEEMKSIL 705
Query: 381 ----ELNYCVSLLSV---HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLI---L 430
++ + V +L HP D+ + KL +G K+ + + L
Sbjct: 706 NGRRQVLFGVDILRKICNHP-----------DLQNHKLMSSTTGYGSGSKSGKMQVVKSL 754
Query: 431 LEL--STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN 488
LEL T K L+F+Q+ ++++ L N G MDG ++ RQ+ ++ N
Sbjct: 755 LELWKDTGHKTLLFTQH----RIMLDILEKFVNSLSGFNYRRMDGTTPIQHRQAMVDEFN 810
Query: 489 -DPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVY 547
DPS + L +TK G+NL GA RV++ D WNP + QA RA+RLGQKR V VY
Sbjct: 811 NDPS--LHVFLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDVQARERAWRLGQKRDVTVY 868
Query: 548 HLITSETLEWDKLRRQARKVWWSNMVF 574
L+T+ T+E RQ K + +N +
Sbjct: 869 RLMTAGTIEEKIYHRQIFKQFLTNKIL 895
>gi|293553056|ref|ZP_06673698.1| Snf2 family protein [Enterococcus faecium E1039]
gi|291602765|gb|EFF32975.1| Snf2 family protein [Enterococcus faecium E1039]
Length = 1064
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 126/515 (24%), Positives = 221/515 (42%), Gaps = 92/515 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ + M +Q++GF W + G G I++ G GKT T+
Sbjct: 604 LPKGLNATMRDYQKQGFR--WLKMLGHYQF-------------GGILADEMGLGKTLQTI 648
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
FL + + +I+AP S++ W+ E +K+ P LS + ++
Sbjct: 649 AFLLSEKEERKSFSALIVAPASLIYNWQAEVRKFA----------PSLS-------IQVI 691
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
+ K+ R ++ T I SY + ++ + I + DE
Sbjct: 692 NGNKKEREEL----------LAKDTDIRVTSYASLRQDLANYQSQKI-----DYLILDEA 736
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301
+N T +AL + +R LSGTP +NN +EL + + + F + R
Sbjct: 737 QMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLFATIMPGFF----PTKTKFR 792
Query: 302 EISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAPFVNVHKGTVLQESLPGLRH 355
E++ + A +I R R D++ LK+L EK + + + TV L +R
Sbjct: 793 ELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYSALTEEQKTVYLAYLRQMRE 848
Query: 356 SVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLK 415
+ + + F+K + G+ ++ C P+ F E + S KL ++K
Sbjct: 849 EITSMDSEAFKKNRIGILAGLTRLRQI--CCD---------PRLFIEDYQGGSGKLEQVK 897
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
L++ +VL+FSQ+ LT++ E+L G Y+ G
Sbjct: 898 D-----------LLVAAKENKRRVLLFSQFTGMLTILQEELAEL-----GISTFYLRGST 941
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
+ R S ++ N + + + L S KA G+NL GA V+L D+ WNP +E QA RA
Sbjct: 942 KPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTVILYDLWWNPAIEEQAAGRA 999
Query: 536 YRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 1000 HRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1034
>gi|294619479|ref|ZP_06698922.1| Snf2 family protein [Enterococcus faecium E1679]
gi|431702935|ref|ZP_19525058.1| Snf2 family protein [Enterococcus faecium E1904]
gi|291594275|gb|EFF25706.1| Snf2 family protein [Enterococcus faecium E1679]
gi|430597018|gb|ELB34829.1| Snf2 family protein [Enterococcus faecium E1904]
Length = 1064
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 126/515 (24%), Positives = 221/515 (42%), Gaps = 92/515 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ + M +Q++GF W + G G I++ G GKT T+
Sbjct: 604 LPKGLNATMRDYQKQGFR--WLKMLGHYQF-------------GGILADEMGLGKTLQTI 648
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
FL + + +I+AP S++ W+ E +K+ P LS + ++
Sbjct: 649 AFLLSEKEERKSFSALIVAPASLIYNWQAEVRKFA----------PSLS-------IQVI 691
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
+ K+ R ++ T I SY + ++ + I + DE
Sbjct: 692 NGNKKEREEL----------LAKDTDIRVTSYASLRQDLANYQSQKI-----DYLILDEA 736
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301
+N T +AL + +R LSGTP +NN +EL + + + F + R
Sbjct: 737 QMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLFATIMPGFF----PTKTKFR 792
Query: 302 EISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAPFVNVHKGTVLQESLPGLRH 355
E++ + A +I R R D++ LK+L EK + + + TV L +R
Sbjct: 793 ELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYSALTEEQKTVYLAYLRQMRE 848
Query: 356 SVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLK 415
+ + + F+K + G+ ++ C P+ F E + S KL ++K
Sbjct: 849 EITSMDSEAFKKNRIGILAGLTRLRQI--CCD---------PRLFIEDYQGGSGKLEQVK 897
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
L++ +VL+FSQ+ LT++ E+L G Y+ G
Sbjct: 898 D-----------LLVAAKENKRRVLLFSQFTGMLTILQEELAEL-----GISTFYLRGST 941
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
+ R S ++ N + + + L S KA G+NL GA V+L D+ WNP +E QA RA
Sbjct: 942 KPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTVILYDLWWNPAIEEQAAGRA 999
Query: 536 YRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 1000 HRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1034
>gi|425057230|ref|ZP_18460657.1| protein, SNF2 family [Enterococcus faecium 504]
gi|403040896|gb|EJY51943.1| protein, SNF2 family [Enterococcus faecium 504]
Length = 1064
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 126/515 (24%), Positives = 221/515 (42%), Gaps = 92/515 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ + M +Q++GF W + G G I++ G GKT T+
Sbjct: 604 LPKGLNATMRDYQKQGFR--WLKMLGHYQF-------------GGILADEMGLGKTLQTI 648
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
FL + + +I+AP S++ W+ E +K+ P LS + ++
Sbjct: 649 AFLLSEKEERKSFSALIVAPASLIYNWQAEVRKFA----------PSLS-------IQVI 691
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
+ K+ R ++ T I SY + ++ + I + DE
Sbjct: 692 NGNKKEREEL----------LAKDTDIRVTSYASLRQDLANYQSQKI-----DYLILDEA 736
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301
+N T +AL + +R LSGTP +NN +EL + + + F + R
Sbjct: 737 QMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLFATIMPGFF----PTKTKFR 792
Query: 302 EISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAPFVNVHKGTVLQESLPGLRH 355
E++ + A +I R R D++ LK+L EK + + + TV L +R
Sbjct: 793 ELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYSALTEEQKTVYLAYLRQMRE 848
Query: 356 SVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLK 415
+ + + F+K + G+ ++ C P+ F E + S KL ++K
Sbjct: 849 EITSMDSEAFKKNRIGILAGLTRLRQI--CCD---------PRLFIEDYQGGSGKLEQVK 897
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
L++ +VL+FSQ+ LT++ E+L G Y+ G
Sbjct: 898 D-----------LLVAAKENKRRVLLFSQFTGMLTILQEELAEL-----GISTFYLRGST 941
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
+ R S ++ N + + + L S KA G+NL GA V+L D+ WNP +E QA RA
Sbjct: 942 KPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTVILYDLWWNPAIEEQAAGRA 999
Query: 536 YRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 1000 HRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1034
>gi|146419519|ref|XP_001485721.1| hypothetical protein PGUG_01392 [Meyerozyma guilliermondii ATCC
6260]
Length = 888
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 139/523 (26%), Positives = 233/523 (44%), Gaps = 75/523 (14%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ+E F+ + + G + G G +++ G GKT T+ + ++ +
Sbjct: 265 PHQKEAVAFLHECVTG----------QRSYQGKGALLADEMGLGKTLSTIALIWKLVRRN 314
Query: 132 PR----CRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
C V I+ P +++ W EFKKW IDI L ++GK+ A D +
Sbjct: 315 SDGVQVCNKVLIVCPVTLIANWNREFKKW-IDI--NRLGVLSINGKQG-AAADKQDIKNF 370
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEK-LVSGDELSGILLDLPGLFVFDEGHTPR 245
G+ +V Y L I+G +EK L ELS I DL V DEGH +
Sbjct: 371 GKNRV----YNVL--------IMG-----YEKVLTCASELSEIKFDL---LVCDEGHRLK 410
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG-REIS 304
+ + K L + ++I+L+GTP QN+ E + + + + +K R I
Sbjct: 411 SSTNKVLKVLKHLDVEKKIVLTGTPIQNDLVEFFTIVDFINPGILGLFSSFQKDYIRHIL 470
Query: 305 KAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNV----HKGTVLQESLPGLRHSVVIL 360
+++ + C N ++ L K+ N +L L ++
Sbjct: 471 RSRDVN-------CTNKEIIDRGDLLSSKLIALTNEFTLRRTSDILSSFLTTKTDVILFC 523
Query: 361 QPDEFQKRLCKAVEGVKSFVELNYCVS------LLSVHPSLL--PQQFFESFDVDSAKLA 412
+P Q L + ++ K+F + +Y S L+++ + P V+ ++L
Sbjct: 524 KPTTLQLSLFEDIKRSKTF-KASYSGSRGGILGLITLFKKICNSPSLLAPEGKVEESELL 582
Query: 413 RLKL-------DPEAGIKTRFLLILLELS-TNEKVLVFSQYIEPLTLIMEQLRHRFNWRE 464
L + +G + +LLE+ EKV++ S Y + L L +EQ ++ N +
Sbjct: 583 GLDFGLNVELNNKTSGKLLVLIPLLLEIQRLGEKVVLVSNYTQTLKL-LEQSVNKLNMKS 641
Query: 465 GQEVLYMDGKQDVKKRQSSINVLNDPSSQAR-IMLASTKACCEGINLVGASRVVLLDVVW 523
L +DG K+R +N N S+++ I L S KA G+NLVGASR++L D W
Sbjct: 642 ----LRLDGTTANKERDKLVNQFNKLSAESTMIFLLSAKAGGVGLNLVGASRLILFDNDW 697
Query: 524 NPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
NP V+ QA++R +R GQKR V +Y L+T+ ++ +RQ K
Sbjct: 698 NPSVDLQAMARIHRDGQKRPVFIYRLLTTGCIDEKIFQRQLMK 740
>gi|69247670|ref|ZP_00604446.1| SNF2-related:Helicase, C-terminal:SWIM Zn-finger:DEAD/DEAH box
helicase, N-terminal [Enterococcus faecium DO]
gi|257882164|ref|ZP_05661817.1| Snf2 family protein [Enterococcus faecium 1,231,502]
gi|260562387|ref|ZP_05832901.1| Snf2 family protein [Enterococcus faecium C68]
gi|293559937|ref|ZP_06676447.1| Snf2 family protein [Enterococcus faecium E1162]
gi|294621010|ref|ZP_06700206.1| Snf2 family protein [Enterococcus faecium U0317]
gi|314937677|ref|ZP_07845002.1| protein, SNF2 family [Enterococcus faecium TX0133a04]
gi|314940927|ref|ZP_07847833.1| protein, SNF2 family [Enterococcus faecium TX0133C]
gi|314948052|ref|ZP_07851454.1| protein, SNF2 family [Enterococcus faecium TX0082]
gi|314952331|ref|ZP_07855341.1| protein, SNF2 family [Enterococcus faecium TX0133A]
gi|314991945|ref|ZP_07857400.1| protein, SNF2 family [Enterococcus faecium TX0133B]
gi|314995203|ref|ZP_07860317.1| protein, SNF2 family [Enterococcus faecium TX0133a01]
gi|383329804|ref|YP_005355688.1| Snf2 family protein [Enterococcus faecium Aus0004]
gi|389869609|ref|YP_006377032.1| Snf2 family helicase [Enterococcus faecium DO]
gi|406579541|ref|ZP_11054771.1| Snf2 family protein [Enterococcus sp. GMD4E]
gi|406581747|ref|ZP_11056883.1| Snf2 family protein [Enterococcus sp. GMD3E]
gi|406583850|ref|ZP_11058889.1| Snf2 family protein [Enterococcus sp. GMD2E]
gi|406589258|ref|ZP_11063699.1| Snf2 family protein [Enterococcus sp. GMD1E]
gi|410936640|ref|ZP_11368504.1| Snf2 family helicase [Enterococcus sp. GMD5E]
gi|415897587|ref|ZP_11551129.1| Snf2 family protein [Enterococcus faecium E4453]
gi|416132625|ref|ZP_11597929.1| Snf2 family protein [Enterococcus faecium E4452]
gi|424779568|ref|ZP_18206488.1| protein, SNF2 family [Enterococcus faecium V689]
gi|424795900|ref|ZP_18221706.1| protein, SNF2 family [Enterococcus faecium S447]
gi|424819797|ref|ZP_18244837.1| protein, SNF2 family [Enterococcus faecium R501]
gi|424853522|ref|ZP_18277896.1| protein, SNF2 family [Enterococcus faecium R499]
gi|424869908|ref|ZP_18293584.1| protein, SNF2 family [Enterococcus faecium R497]
gi|424938621|ref|ZP_18354395.1| protein, SNF2 family [Enterococcus faecium R496]
gi|424952989|ref|ZP_18367980.1| protein, SNF2 family [Enterococcus faecium R494]
gi|424956093|ref|ZP_18370888.1| protein, SNF2 family [Enterococcus faecium R446]
gi|424959711|ref|ZP_18374277.1| protein, SNF2 family [Enterococcus faecium P1986]
gi|424962986|ref|ZP_18377257.1| protein, SNF2 family [Enterococcus faecium P1190]
gi|424966599|ref|ZP_18380363.1| protein, SNF2 family [Enterococcus faecium P1140]
gi|424969693|ref|ZP_18383250.1| protein, SNF2 family [Enterococcus faecium P1139]
gi|424974181|ref|ZP_18387431.1| protein, SNF2 family [Enterococcus faecium P1137]
gi|424976510|ref|ZP_18389593.1| protein, SNF2 family [Enterococcus faecium P1123]
gi|424980714|ref|ZP_18393489.1| protein, SNF2 family [Enterococcus faecium ERV99]
gi|424983286|ref|ZP_18395880.1| protein, SNF2 family [Enterococcus faecium ERV69]
gi|424986406|ref|ZP_18398827.1| protein, SNF2 family [Enterococcus faecium ERV38]
gi|424989793|ref|ZP_18402047.1| protein, SNF2 family [Enterococcus faecium ERV26]
gi|424993995|ref|ZP_18405962.1| protein, SNF2 family [Enterococcus faecium ERV168]
gi|425001137|ref|ZP_18412665.1| protein, SNF2 family [Enterococcus faecium ERV161]
gi|425003485|ref|ZP_18414849.1| protein, SNF2 family [Enterococcus faecium ERV102]
gi|425007272|ref|ZP_18418410.1| protein, SNF2 family [Enterococcus faecium ERV1]
gi|425010119|ref|ZP_18421091.1| protein, SNF2 family [Enterococcus faecium E422]
gi|425013056|ref|ZP_18423803.1| protein, SNF2 family [Enterococcus faecium E417]
gi|425017212|ref|ZP_18427733.1| protein, SNF2 family [Enterococcus faecium C621]
gi|425020285|ref|ZP_18430602.1| protein, SNF2 family [Enterococcus faecium C497]
gi|425022638|ref|ZP_18432809.1| protein, SNF2 family [Enterococcus faecium C1904]
gi|425032527|ref|ZP_18437567.1| protein, SNF2 family [Enterococcus faecium 515]
gi|425034257|ref|ZP_18439162.1| protein, SNF2 family [Enterococcus faecium 514]
gi|425037697|ref|ZP_18442348.1| protein, SNF2 family [Enterococcus faecium 513]
gi|425040567|ref|ZP_18445026.1| protein, SNF2 family [Enterococcus faecium 511]
gi|425044302|ref|ZP_18448468.1| protein, SNF2 family [Enterococcus faecium 510]
gi|425047527|ref|ZP_18451477.1| protein, SNF2 family [Enterococcus faecium 509]
gi|425051941|ref|ZP_18455578.1| protein, SNF2 family [Enterococcus faecium 506]
gi|425060844|ref|ZP_18464120.1| protein, SNF2 family [Enterococcus faecium 503]
gi|427395750|ref|ZP_18888672.1| hypothetical protein HMPREF9307_00848 [Enterococcus durans
FB129-CNAB-4]
gi|430832391|ref|ZP_19450437.1| Snf2 family protein [Enterococcus faecium E0333]
gi|430845188|ref|ZP_19463084.1| Snf2 family protein [Enterococcus faecium E1050]
gi|430845732|ref|ZP_19463609.1| Snf2 family protein [Enterococcus faecium E1133]
gi|430856694|ref|ZP_19474379.1| Snf2 family protein [Enterococcus faecium E1392]
gi|430860905|ref|ZP_19478500.1| Snf2 family protein [Enterococcus faecium E1573]
gi|430960588|ref|ZP_19487124.1| Snf2 family protein [Enterococcus faecium E1576]
gi|431012388|ref|ZP_19490179.1| Snf2 family protein [Enterococcus faecium E1578]
gi|431238703|ref|ZP_19503572.1| Snf2 family protein [Enterococcus faecium E1622]
gi|431260171|ref|ZP_19505677.1| Snf2 family protein [Enterococcus faecium E1623]
gi|431305141|ref|ZP_19508508.1| Snf2 family protein [Enterococcus faecium E1626]
gi|431548685|ref|ZP_19519157.1| Snf2 family protein [Enterococcus faecium E1731]
gi|431745131|ref|ZP_19533985.1| Snf2 family protein [Enterococcus faecium E2134]
gi|431749545|ref|ZP_19538284.1| Snf2 family protein [Enterococcus faecium E2297]
gi|431755479|ref|ZP_19544128.1| Snf2 family protein [Enterococcus faecium E2883]
gi|431768361|ref|ZP_19556800.1| Snf2 family protein [Enterococcus faecium E1321]
gi|431771608|ref|ZP_19559989.1| Snf2 family protein [Enterococcus faecium E1644]
gi|431773728|ref|ZP_19562045.1| Snf2 family protein [Enterococcus faecium E2369]
gi|431777473|ref|ZP_19565727.1| Snf2 family protein [Enterococcus faecium E2560]
gi|431779847|ref|ZP_19568037.1| Snf2 family protein [Enterococcus faecium E4389]
gi|431782847|ref|ZP_19570974.1| Snf2 family protein [Enterococcus faecium E6012]
gi|431786311|ref|ZP_19574325.1| Snf2 family protein [Enterococcus faecium E6045]
gi|447913692|ref|YP_007395104.1| Superfamily II DNA, RNA helicase, SNF2 family [Enterococcus faecium
NRRL B-2354]
gi|68194742|gb|EAN09222.1| SNF2-related:Helicase, C-terminal:SWIM Zn-finger:DEAD/DEAH box
helicase, N-terminal [Enterococcus faecium DO]
gi|257817822|gb|EEV45150.1| Snf2 family protein [Enterococcus faecium 1,231,502]
gi|260073311|gb|EEW61652.1| Snf2 family protein [Enterococcus faecium C68]
gi|291599410|gb|EFF30431.1| Snf2 family protein [Enterococcus faecium U0317]
gi|291606102|gb|EFF35526.1| Snf2 family protein [Enterococcus faecium E1162]
gi|313590612|gb|EFR69457.1| protein, SNF2 family [Enterococcus faecium TX0133a01]
gi|313593529|gb|EFR72374.1| protein, SNF2 family [Enterococcus faecium TX0133B]
gi|313595546|gb|EFR74391.1| protein, SNF2 family [Enterococcus faecium TX0133A]
gi|313600285|gb|EFR79128.1| protein, SNF2 family [Enterococcus faecium TX0133C]
gi|313642950|gb|EFS07530.1| protein, SNF2 family [Enterococcus faecium TX0133a04]
gi|313645468|gb|EFS10048.1| protein, SNF2 family [Enterococcus faecium TX0082]
gi|364090444|gb|EHM33024.1| Snf2 family protein [Enterococcus faecium E4453]
gi|364093240|gb|EHM35529.1| Snf2 family protein [Enterococcus faecium E4452]
gi|378939498|gb|AFC64570.1| Snf2 family protein [Enterococcus faecium Aus0004]
gi|388534858|gb|AFK60050.1| Snf2 family helicase [Enterococcus faecium DO]
gi|402923917|gb|EJX44167.1| protein, SNF2 family [Enterococcus faecium S447]
gi|402925134|gb|EJX45305.1| protein, SNF2 family [Enterococcus faecium V689]
gi|402925810|gb|EJX45904.1| protein, SNF2 family [Enterococcus faecium R501]
gi|402932644|gb|EJX52133.1| protein, SNF2 family [Enterococcus faecium R499]
gi|402934866|gb|EJX54161.1| protein, SNF2 family [Enterococcus faecium R497]
gi|402936543|gb|EJX55713.1| protein, SNF2 family [Enterococcus faecium R496]
gi|402940196|gb|EJX59052.1| protein, SNF2 family [Enterococcus faecium R494]
gi|402946653|gb|EJX64910.1| protein, SNF2 family [Enterococcus faecium R446]
gi|402949642|gb|EJX67687.1| protein, SNF2 family [Enterococcus faecium P1986]
gi|402950584|gb|EJX68574.1| protein, SNF2 family [Enterococcus faecium P1190]
gi|402956154|gb|EJX73628.1| protein, SNF2 family [Enterococcus faecium P1140]
gi|402957321|gb|EJX74718.1| protein, SNF2 family [Enterococcus faecium P1137]
gi|402963695|gb|EJX80546.1| protein, SNF2 family [Enterococcus faecium P1139]
gi|402965675|gb|EJX82373.1| protein, SNF2 family [Enterococcus faecium ERV99]
gi|402969303|gb|EJX85726.1| protein, SNF2 family [Enterococcus faecium P1123]
gi|402971884|gb|EJX88124.1| protein, SNF2 family [Enterococcus faecium ERV69]
gi|402976520|gb|EJX92406.1| protein, SNF2 family [Enterococcus faecium ERV38]
gi|402981170|gb|EJX96718.1| protein, SNF2 family [Enterococcus faecium ERV26]
gi|402981334|gb|EJX96873.1| protein, SNF2 family [Enterococcus faecium ERV168]
gi|402987369|gb|EJY02438.1| protein, SNF2 family [Enterococcus faecium ERV161]
gi|402991794|gb|EJY06542.1| protein, SNF2 family [Enterococcus faecium ERV102]
gi|402995457|gb|EJY09920.1| protein, SNF2 family [Enterococcus faecium ERV1]
gi|403001147|gb|EJY15219.1| protein, SNF2 family [Enterococcus faecium E422]
gi|403001868|gb|EJY15887.1| protein, SNF2 family [Enterococcus faecium E417]
gi|403004841|gb|EJY18603.1| protein, SNF2 family [Enterococcus faecium C621]
gi|403009680|gb|EJY23109.1| protein, SNF2 family [Enterococcus faecium C497]
gi|403012487|gb|EJY25712.1| protein, SNF2 family [Enterococcus faecium C1904]
gi|403012716|gb|EJY25902.1| protein, SNF2 family [Enterococcus faecium 515]
gi|403020953|gb|EJY33442.1| protein, SNF2 family [Enterococcus faecium 514]
gi|403021480|gb|EJY33938.1| protein, SNF2 family [Enterococcus faecium 513]
gi|403028222|gb|EJY40057.1| protein, SNF2 family [Enterococcus faecium 511]
gi|403030107|gb|EJY41819.1| protein, SNF2 family [Enterococcus faecium 510]
gi|403033512|gb|EJY45012.1| protein, SNF2 family [Enterococcus faecium 509]
gi|403036182|gb|EJY47543.1| protein, SNF2 family [Enterococcus faecium 506]
gi|403042219|gb|EJY53184.1| protein, SNF2 family [Enterococcus faecium 503]
gi|404455269|gb|EKA02128.1| Snf2 family protein [Enterococcus sp. GMD4E]
gi|404459212|gb|EKA05582.1| Snf2 family protein [Enterococcus sp. GMD3E]
gi|404464998|gb|EKA10507.1| Snf2 family protein [Enterococcus sp. GMD2E]
gi|404471119|gb|EKA15675.1| Snf2 family protein [Enterococcus sp. GMD1E]
gi|410735056|gb|EKQ76973.1| Snf2 family helicase [Enterococcus sp. GMD5E]
gi|425723739|gb|EKU86626.1| hypothetical protein HMPREF9307_00848 [Enterococcus durans
FB129-CNAB-4]
gi|430480089|gb|ELA57283.1| Snf2 family protein [Enterococcus faecium E0333]
gi|430496022|gb|ELA72142.1| Snf2 family protein [Enterococcus faecium E1050]
gi|430540350|gb|ELA80553.1| Snf2 family protein [Enterococcus faecium E1133]
gi|430544130|gb|ELA84174.1| Snf2 family protein [Enterococcus faecium E1392]
gi|430551223|gb|ELA90992.1| Snf2 family protein [Enterococcus faecium E1573]
gi|430556097|gb|ELA95613.1| Snf2 family protein [Enterococcus faecium E1576]
gi|430559899|gb|ELA99223.1| Snf2 family protein [Enterococcus faecium E1578]
gi|430572404|gb|ELB11266.1| Snf2 family protein [Enterococcus faecium E1622]
gi|430576910|gb|ELB15535.1| Snf2 family protein [Enterococcus faecium E1623]
gi|430579348|gb|ELB17857.1| Snf2 family protein [Enterococcus faecium E1626]
gi|430590993|gb|ELB29038.1| Snf2 family protein [Enterococcus faecium E1731]
gi|430611185|gb|ELB48295.1| Snf2 family protein [Enterococcus faecium E2134]
gi|430611459|gb|ELB48549.1| Snf2 family protein [Enterococcus faecium E2297]
gi|430616701|gb|ELB53596.1| Snf2 family protein [Enterococcus faecium E2883]
gi|430629436|gb|ELB65837.1| Snf2 family protein [Enterococcus faecium E1321]
gi|430633025|gb|ELB69208.1| Snf2 family protein [Enterococcus faecium E1644]
gi|430635614|gb|ELB71707.1| Snf2 family protein [Enterococcus faecium E2369]
gi|430639585|gb|ELB75458.1| Snf2 family protein [Enterococcus faecium E2560]
gi|430641235|gb|ELB77048.1| Snf2 family protein [Enterococcus faecium E4389]
gi|430645796|gb|ELB81299.1| Snf2 family protein [Enterococcus faecium E6045]
gi|430646410|gb|ELB81886.1| Snf2 family protein [Enterococcus faecium E6012]
gi|445189401|gb|AGE31043.1| Superfamily II DNA, RNA helicase, SNF2 family [Enterococcus faecium
NRRL B-2354]
Length = 1064
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 126/515 (24%), Positives = 221/515 (42%), Gaps = 92/515 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ + M +Q++GF W + G G I++ G GKT T+
Sbjct: 604 LPKGLNATMRDYQKQGFR--WLKMLGHYQF-------------GGILADEMGLGKTLQTI 648
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
FL + + +I+AP S++ W+ E +K+ P LS + ++
Sbjct: 649 AFLLSEKEERKSFSALIVAPASLIYNWQAEVRKFA----------PSLS-------IQVI 691
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
+ K+ R ++ T I SY + ++ + I + DE
Sbjct: 692 NGNKKEREEL----------LAKDTDIRVTSYASLRQDLANYQSQKI-----DYLILDEA 736
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301
+N T +AL + +R LSGTP +NN +EL + + + F + R
Sbjct: 737 QMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLFATIMPGFF----PTKTKFR 792
Query: 302 EISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAPFVNVHKGTVLQESLPGLRH 355
E++ + A +I R R D++ LK+L EK + + + TV L +R
Sbjct: 793 ELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYSALTEEQKTVYLAYLRQMRE 848
Query: 356 SVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLK 415
+ + + F+K + G+ ++ C P+ F E + S KL ++K
Sbjct: 849 EITSMDSEAFKKNRIGILAGLTRLRQI--CCD---------PRLFIEDYQGGSGKLEQVK 897
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
L++ +VL+FSQ+ LT++ E+L G Y+ G
Sbjct: 898 D-----------LLVAAKENKRRVLLFSQFTGMLTILQEELAEL-----GISTFYLRGST 941
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
+ R S ++ N + + + L S KA G+NL GA V+L D+ WNP +E QA RA
Sbjct: 942 KPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTVILYDLWWNPAIEEQAAGRA 999
Query: 536 YRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 1000 HRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1034
>gi|292622418|ref|XP_685699.4| PREDICTED: chromodomain-helicase-DNA-binding protein 4 isoform 1
[Danio rerio]
Length = 1953
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 133/512 (25%), Positives = 226/512 (44%), Gaps = 81/512 (15%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 736 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 780
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV------ALMD 182
+ H + ++ AP S ++ WE EF+ W D+ G +++ AV D
Sbjct: 781 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY-----VGDKDSRAVIRENEFTFED 835
Query: 183 NRKRGRGKVGLIR---YVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFD 239
N RG K ++ VK + +L SY +L++ D+ +D L V D
Sbjct: 836 NAIRGGKKASKMKKEAAVKFH-------VLLTSY----ELITIDQAILGSIDWACLVV-D 883
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS 299
E H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 884 EAHRLKNNQSKFFRVLNNYPLQHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEE 943
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI 359
+I+K ++++K+L + + P + + + +P +V
Sbjct: 944 FADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKHMPSKTELIVR 985
Query: 360 LQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFD 405
++ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 986 VELSPMQKKYYKYIL-TRNFEALNTRGGGNQVSLLNVVMDLKKCCNHPYLFPTAATEAPK 1044
Query: 406 VDSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWRE 464
+ + L +G +L +L +VL+FSQ + L L+ + L + E
Sbjct: 1045 MPNGMYDGSALTKASGKLMLLFKMLKKLKEGGHRVLIFSQMTKMLDLLEDFLEN-----E 1099
Query: 465 GQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWN 524
G + +DG RQ +I+ N P + + L ST+A GINL A V++ D WN
Sbjct: 1100 GYKYERIDGGVTGGMRQEAIDRFNAPGAPQFVFLLSTRAGGLGINLATADTVIIYDSDWN 1159
Query: 525 PFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
P + QA SRA+R+GQ + V +Y +T ++E
Sbjct: 1160 PHNDIQAFSRAHRIGQNKKVMIYRFVTKASVE 1191
>gi|430901604|ref|ZP_19484843.1| Snf2 family protein [Enterococcus faecium E1575]
gi|430554832|gb|ELA94403.1| Snf2 family protein [Enterococcus faecium E1575]
Length = 1064
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 126/515 (24%), Positives = 221/515 (42%), Gaps = 92/515 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ + M +Q++GF W + G G I++ G GKT T+
Sbjct: 604 LPKGLNATMRDYQKQGFR--WLKMLGHYQF-------------GGILADEMGLGKTLQTI 648
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
FL + + +I+AP S++ W+ E +K+ P LS + ++
Sbjct: 649 AFLLSEKEERKSFSALIVAPASLIYNWQAEVRKFA----------PSLS-------IQVI 691
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
+ K+ R ++ T I SY + ++ + I + DE
Sbjct: 692 NGNKKEREEL----------LAKDTDIRVTSYASLRQDLANYQSQKI-----DYLILDEA 736
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301
+N T +AL + +R LSGTP +NN +EL + + + F + R
Sbjct: 737 QMIKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLFATIMPGFF----PTKTKFR 792
Query: 302 EISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAPFVNVHKGTVLQESLPGLRH 355
E++ + A +I R R D++ LK+L EK + + + TV L +R
Sbjct: 793 ELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYSALTEEQKTVYLAYLRQMRE 848
Query: 356 SVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLK 415
+ + + F+K + G+ ++ C P+ F E + S KL ++K
Sbjct: 849 EITSMDSEAFKKNRIGILAGLTRLRQI--CCD---------PRLFIEDYQGGSGKLEQVK 897
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
L++ +VL+FSQ+ LT++ E+L G Y+ G
Sbjct: 898 D-----------LLVAAKENKRRVLLFSQFTGMLTILQEELAEL-----GISTFYLRGST 941
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
+ R S ++ N + + + L S KA G+NL GA V+L D+ WNP +E QA RA
Sbjct: 942 KPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTVILYDLWWNPAIEEQAAGRA 999
Query: 536 YRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 1000 HRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1034
>gi|430812954|emb|CCJ29671.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 1131
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 121/474 (25%), Positives = 203/474 (42%), Gaps = 63/474 (13%)
Query: 113 GTGKTGLTLVFLQAYMK-LHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSG 171
G GKT T+ FL + LH +I+ P S + W+E + W D+
Sbjct: 193 GLGKTAQTVSFLSYLVHTLHIHGPFLIVVPLSTIPAWQENLETWATDL------------ 240
Query: 172 KENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLD 231
++ + N K + Y+ S K+ IL +Y L EL+ I
Sbjct: 241 ----NSIIYIGNSKARKTIQEYEFYIDGNSKKLKFNILITTYEYI--LKDRYELNQIKWQ 294
Query: 232 LPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGE 291
DE H +N ++ ++++L KT R++++GTP QNN +EL + + + E
Sbjct: 295 Y---MAVDEAHRLKNSESQLYESLKDFKTVNRLLITGTPLQNNIKELAALIDFLMPKRFE 351
Query: 292 VLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLP 351
+ R + E A+ + I ++L +++ P++ +++SLP
Sbjct: 352 IDREL---NFETPNAEQEAYI---------------RDLHKRLQPYILRRLKKDVEKSLP 393
Query: 352 GLRHSVVILQPDEFQKRLCKAV-----------EGVKSFVELNYCVSL--LSVHPSLLPQ 398
++ ++ E Q K + G LN + L S HP L P
Sbjct: 394 SKSERILRVELSELQTHWYKNILTRNYRALSMSTGNSQLNLLNIVIELKKASNHPYLFPN 453
Query: 399 QFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTN-----EKVLVFSQYIEPLTLIM 453
+ +K R + I + +++L +L T +VL+FSQ + L +I
Sbjct: 454 AEENWLNNIGSKKTREDILRGIVINSGKMILLDKLLTRLKRDGHRVLIFSQMVRMLDIIG 513
Query: 454 EQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
+ L R G +DG R++SI N S + L ST+A GINL+ A
Sbjct: 514 DYLVLR-----GLPFQRLDGTISAPIRKASIEHFNAAGSPDFVFLLSTRAGGLGINLMTA 568
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567
V++ D WNP + QA++RA+R+GQK V VY ++ +T+E D L R RK+
Sbjct: 569 DTVIIFDSDWNPQADLQAMARAHRIGQKSHVMVYRFVSKDTVEEDILERARRKM 622
>gi|257885356|ref|ZP_05665009.1| Snf2 family protein [Enterococcus faecium 1,231,501]
gi|257821212|gb|EEV48342.1| Snf2 family protein [Enterococcus faecium 1,231,501]
Length = 1064
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 126/515 (24%), Positives = 221/515 (42%), Gaps = 92/515 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ + M +Q++GF W + G G I++ G GKT T+
Sbjct: 604 LPKGLNATMRDYQKQGFR--WLKMLGHYQF-------------GGILADEMGLGKTLQTI 648
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
FL + + +I+AP S++ W+ E +K+ P LS + ++
Sbjct: 649 AFLLSEKEERKSFSALIVAPASLIYNWQAEVRKFA----------PSLS-------IQVI 691
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
+ K+ R ++ T I SY + ++ + I + DE
Sbjct: 692 NGNKKEREEL----------LAKDTDIRVTSYASLRQDLANYQSQKI-----DYLILDEA 736
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301
+N T +AL + +R LSGTP +NN +EL + + + F + R
Sbjct: 737 QMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLFATIMPGFF----PTKTKFR 792
Query: 302 EISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAPFVNVHKGTVLQESLPGLRH 355
E++ + A +I R R D++ LK+L EK + + + TV L +R
Sbjct: 793 ELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYSALTEEQKTVYLAYLRQMRE 848
Query: 356 SVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLK 415
+ + + F+K + G+ ++ C P+ F E + S KL ++K
Sbjct: 849 EITSMDSEAFKKNRIGILAGLTRLRQI--CCD---------PRLFIEDYQGGSGKLEQVK 897
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
L++ +VL+FSQ+ LT++ E+L G Y+ G
Sbjct: 898 D-----------LLVAAKENKRRVLLFSQFTGMLTILQEELAEL-----GISTFYLRGST 941
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
+ R S ++ N + + + L S KA G+NL GA V+L D+ WNP +E QA RA
Sbjct: 942 KPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTVILYDLWWNPAIEEQAAGRA 999
Query: 536 YRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 1000 HRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1034
>gi|430853851|ref|ZP_19471577.1| Snf2 family protein [Enterococcus faecium E1258]
gi|430540100|gb|ELA80318.1| Snf2 family protein [Enterococcus faecium E1258]
Length = 1064
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 126/515 (24%), Positives = 221/515 (42%), Gaps = 92/515 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ + M +Q++GF W + G G I++ G GKT T+
Sbjct: 604 LPKGLNATMRDYQKQGFR--WLKMLGHYQF-------------GGILADEMGLGKTLQTI 648
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
FL + + +I+AP S++ W+ E +K+ P LS + ++
Sbjct: 649 AFLLSEKEERKSFSALIVAPASLIYNWQAEVRKFA----------PSLS-------IQVI 691
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
+ K+ R ++ T I SY + ++ + I + DE
Sbjct: 692 NGNKKEREEL----------LAKDTDIRVTSYASLRQDLANYQSQKI-----DYLILDEA 736
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301
+N T +AL + +R LSGTP +NN +EL + + + F + R
Sbjct: 737 QMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLFATIMPGFF----PTKTKFR 792
Query: 302 EISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAPFVNVHKGTVLQESLPGLRH 355
E++ + A +I R R D++ LK+L EK + + + TV L +R
Sbjct: 793 ELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYSALTEEQKTVYLAYLRQMRE 848
Query: 356 SVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLK 415
+ + + F+K + G+ ++ C P+ F E + S KL ++K
Sbjct: 849 EITSMDSEAFKKNRIGILAGLTRLRQI--CCD---------PRLFIEDYQGGSGKLEQVK 897
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
L++ +VL+FSQ+ LT++ E+L G Y+ G
Sbjct: 898 D-----------LLVAAKENKRRVLLFSQFTGMLTILQEELAEL-----GISTFYLRGST 941
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
+ R S ++ N + + + L S KA G+NL GA V+L D+ WNP +E QA RA
Sbjct: 942 KPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTVILYDLWWNPAIEEQAAGRA 999
Query: 536 YRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 1000 HRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1034
>gi|218189474|gb|EEC71901.1| hypothetical protein OsI_04668 [Oryza sativa Indica Group]
Length = 1105
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 140/491 (28%), Positives = 213/491 (43%), Gaps = 77/491 (15%)
Query: 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLN 165
I++ G GKT + FL +K P +I+AP+S+LL WE+EF +W D LN
Sbjct: 561 ILADEMGLGKTVQVVCFLYHIIKESLTASPALILAPKSILLQWEKEFCQWASD-----LN 615
Query: 166 KPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225
G D+RK I+ ++YS LF+ LV+ E
Sbjct: 616 VIVYQGDR--------DSRK-------CIQVHEMYS--------SDGKPLFDALVTSYEF 652
Query: 226 SGILLDLPGLF-----VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELEN 280
I + F V DE H + D + L R + +++L+GTP QNN EL +
Sbjct: 653 VQIDKAVLQKFKWSTIVIDEAHRMKKLDCKLAACLKRYCSEFQLLLTGTPLQNNIMELFS 712
Query: 281 TLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP-FVN 339
L + + E S K L S I + DEK+ + + + P +
Sbjct: 713 LLHYIDPD-------------EFSDPKADGLFSPIESGRDLTMDEKVARIHDILKPRMLR 759
Query: 340 VHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSL---- 395
K VL +S+P + V + Q+ L + +E NY ++ L
Sbjct: 760 RMKSDVLTDSMPVKKWVEVPCALADSQREL------YINILERNYSKLNSAIRNGLEVGQ 813
Query: 396 -LPQQFFESFDVDSAKLARL-KLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIM 453
+ F S S KL L KL P +K R +VL+FSQ L ++
Sbjct: 814 QATEDVFLSLIASSGKLQLLHKLLPR--LKER----------GNRVLIFSQMTRMLDILE 861
Query: 454 EQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
+ F G + +DG+ + RQ SI + S+ I L ST+A G++L GA
Sbjct: 862 D-----FLCSLGYKYARIDGQTSLSARQESIKEYKNIDSETFIFLMSTRAGGMGVDLPGA 916
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
RV++ D +NPF++ QA SRA+R+GQ R V VY LIT ++E L++ +K+ NM+
Sbjct: 917 DRVIIYDPDFNPFMDLQAQSRAHRIGQTRPVVVYQLITKCSVEEKILQKSKQKLAIENML 976
Query: 574 FPSSDGGGNDQ 584
SS D+
Sbjct: 977 MNSSKKPSADE 987
>gi|428177642|gb|EKX46521.1| hypothetical protein GUITHDRAFT_70514 [Guillardia theta CCMP2712]
Length = 535
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 148/534 (27%), Positives = 231/534 (43%), Gaps = 92/534 (17%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMK 129
M P+Q +G ++ L N TG G I+ G GKT L ++ L ++K
Sbjct: 1 MHPYQLDGLKW-------------LVNQHDTGAGG--ILGDEMGLGKT-LQVISLLGFLK 44
Query: 130 -LHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG 187
+ P ++IAP S++ W E K+W P+L +G + + KR
Sbjct: 45 TVRGEDGPHIVIAPLSVMNNWVTEIKRWC----------PQLRAVPFHGPQSERERIKRE 94
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND 247
K+ G + +E LV+ D + G V DE H +N+
Sbjct: 95 ---------------KLIYGKFDVMCTTYEMLVA-DTYTCQRFHW-GYIVLDEAHRIKNE 137
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK-A 306
T M +A+ R+++ R++++GTP QNN EL + L+ + E T K + SK
Sbjct: 138 KTQMGQAVRRLRSSHRLLITGTPLQNNMHELWSLLNFLYPEVLSNADTFDKEWKSNSKPE 197
Query: 307 KHASLISSIGRCANHR--DDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDE 364
+++S ++ A H L+ LK + + + T ++ +P + +Q
Sbjct: 198 ENSSPLNEKLLSAAHALLGPLMLRRLKSDVLSSMQIPPKTEIKILVP-----LTEMQRFW 252
Query: 365 FQKRL---CKAVEG---VKSFVELNYCVSLL---SVHPSLLPQQFFESFDVDSAKLARLK 415
+ K L C ++ G ++ LN V L HP L FE DV+S
Sbjct: 253 YSKMLTGECASLAGSGQTDAYKRLNSLVMQLRKVCNHPYL-----FEEADVNSG------ 301
Query: 416 LDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLI---MEQLRHRFNWREGQ 466
EA ++ +I+L+ KVLVFSQ+ L ++ M R++F
Sbjct: 302 WTDEAIVQASGKMIVLDKLLTKLQKEGRKVLVFSQFTSMLDVLGDFMHFRRYKF------ 355
Query: 467 EVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPF 526
L +DG V +R+ I +P S + L ST+A GINL A VVL D WNP
Sbjct: 356 --LRLDGSTSVARRRYEIACFQNPKSDYFVYLISTRAGGLGINLTAADTVVLYDSDWNPS 413
Query: 527 VERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGG 580
++ QA RA+R GQK+ V VY LI+ T+E L+ K + MV DGG
Sbjct: 414 IDSQAQDRAHRFGQKKPVSVYRLISRHTVEQRILQVAENKSCMNAMVM--QDGG 465
>gi|414586259|tpg|DAA36830.1| TPA: hypothetical protein ZEAMMB73_340761 [Zea mays]
Length = 894
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 143/584 (24%), Positives = 240/584 (41%), Gaps = 119/584 (20%)
Query: 36 NSRDSGFDSQTG--CDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDE 93
N+ D G++ DP A + +P + K +F HQREG ++W
Sbjct: 305 NAEDVGWEKTEDFKMDPTGTAATSKPYKLPGKIFKMLFAHQREGLRWLW----------- 353
Query: 94 LKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFK 153
+ + TGG I+ G GKT FL R +I+AP+++L W +E
Sbjct: 354 VLHCRGTGG----ILGDDMGLGKTMQVAAFLAGLFHSRLVKRVLIVAPKTLLAHWTKELS 409
Query: 154 KWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKL-YSWKMGTGILGLS 212
G+ + + P + IR +L Y++K G GIL +
Sbjct: 410 IVGLKEKIRDYSGPSTN-----------------------IRNYELQYAFKEG-GILITT 445
Query: 213 YRLFE---KLVSGDELSGILLD------LPGLFVFDEGHTPRNDDTCMFKALSRIKTRRR 263
Y + KL+ G+ + D L + DEGH +N+ T ++L I R
Sbjct: 446 YDIVRNNYKLIRGNSYNNSNDDDDEEGTLWNYVILDEGHLIKNNKTQRAQSLYEIPCAHR 505
Query: 264 IILSGTPFQNNFQELENTLSLV-------RQEFGEVLRTVRKSGREI-SKAKHASLISSI 315
I++SGTP QNN +E+ + +Q+F T G + + A+ + S++
Sbjct: 506 IVISGTPIQNNLKEMWTLFNFCCPDVLGDKQQFKIRYETAILRGNDKNATAREKHVGSNV 565
Query: 316 GRCANHRDDEKLKELKEKIAPF--------VNVHKGTVLQESLPGLRHSVVILQPDEFQK 367
KEL+E+I P+ V G +++L +V L+ Q+
Sbjct: 566 A-----------KELRERIKPYFLRRLKSEVVFDTGASEEKTLAKKNELIVWLKLTPCQR 614
Query: 368 RLCK----------AVEGVKSFVELNYCVSLLSVHPSLLPQQ------------------ 399
+L + A++ S + + + HP LL ++
Sbjct: 615 KLYEAFLNSELVHLALQPKASPLAAITILKKICDHPLLLTKKGAEGVLEGMGEMLNDQDI 674
Query: 400 -FFESFDVDSAKLAR----LKLDPEAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLI 452
E ++ A +A L++ + K F++ LL + VL+FSQ + L LI
Sbjct: 675 GMVEKMAMNLADMAHDDNALEVGQDVSCKLSFIMSLLRNLVGEGHHVLIFSQTRKMLNLI 734
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
E + EG L +DG V R+ + + A + L +T+ G+ L
Sbjct: 735 QEAI-----ILEGYAFLRIDGTTKVSDRERIVKDFQE-GCGAPVFLLTTQVGGLGLTLTK 788
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
A+RV+++D WNP + Q++ RAYR+GQ + V VY L+TS T+E
Sbjct: 789 ATRVIVVDPAWNPSTDNQSVDRAYRIGQTKNVIVYRLMTSATIE 832
>gi|430823674|ref|ZP_19442243.1| Snf2 family protein [Enterococcus faecium E0120]
gi|430866755|ref|ZP_19481981.1| Snf2 family protein [Enterococcus faecium E1574]
gi|431744443|ref|ZP_19533311.1| Snf2 family protein [Enterococcus faecium E2071]
gi|430441707|gb|ELA51778.1| Snf2 family protein [Enterococcus faecium E0120]
gi|430550805|gb|ELA90575.1| Snf2 family protein [Enterococcus faecium E1574]
gi|430605186|gb|ELB42591.1| Snf2 family protein [Enterococcus faecium E2071]
Length = 1064
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 126/515 (24%), Positives = 221/515 (42%), Gaps = 92/515 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ + M +Q++GF W + G G I++ G GKT T+
Sbjct: 604 LPKGLNATMRDYQKQGFR--WLKMLGHYQF-------------GGILADEMGLGKTLQTI 648
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
FL + + +I+AP S++ W+ E +K+ P LS + ++
Sbjct: 649 AFLLSEKEERKSFSALIVAPASLIYNWQAEVRKFA----------PSLS-------IQVI 691
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
+ K+ R ++ T I SY + ++ + I + DE
Sbjct: 692 NGNKKEREEL----------LAKDTDIRVTSYASLRQDLANYQSQKI-----DYLILDEA 736
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301
+N T +AL + +R LSGTP +NN +EL + + + F + R
Sbjct: 737 QMVKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLFATIMPGFF----PTKTKFR 792
Query: 302 EISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAPFVNVHKGTVLQESLPGLRH 355
E++ + A +I R R D++ LK+L EK + + + TV L +R
Sbjct: 793 ELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYSALTEEQKTVYLAYLRQMRE 848
Query: 356 SVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLK 415
+ + + F+K + G+ ++ C P+ F E + S KL ++K
Sbjct: 849 EITSMDSEAFKKNRIGILAGLTRLRQI--CCD---------PRLFIEDYQGGSGKLEQVK 897
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
L++ +VL+FSQ+ LT++ E+L G Y+ G
Sbjct: 898 D-----------LLVAAKENKRRVLLFSQFTGMLTILQEELAEL-----GISTFYLRGST 941
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
+ R S ++ N + + + L S KA G+NL GA V+L D+ WNP +E QA RA
Sbjct: 942 KPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTVILYDLWWNPAIEEQAAGRA 999
Query: 536 YRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 1000 HRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1034
>gi|317034915|ref|XP_001400735.2| DNA repair protein Rhp26/Rad26 [Aspergillus niger CBS 513.88]
Length = 1214
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 142/507 (28%), Positives = 223/507 (43%), Gaps = 73/507 (14%)
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA-PRSMLLTWEEEFKKWGIDIPFYN 163
G II G GKT + FL RPVI+ P +++ W EF +W P +
Sbjct: 437 GGIIGDEMGLGKTIQVISFLAGLHYSKKLTRPVIVVCPATVMKQWVNEFHRW---WPPFR 493
Query: 164 LNKPELSG-------KENNGAVALMD---NRKRGRG-KVGLIRYVKLYSWKMGTG-ILGL 211
++ SG E++ AL+ N RG GL K+ + G +L
Sbjct: 494 VSILHTSGSGMVNIRNESSREDALLSQAWNASSTRGMPSGLKAARKVVKRVVEEGHVLVT 553
Query: 212 SYRLFEKLVSGDELSGILLDLP---GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSG 268
+Y + S L +P G V DEGH RN +T + ++T RIILSG
Sbjct: 554 TYSGLQTYAS--------LVIPIEWGCAVLDEGHKIRNPNTSITIHCKELRTPHRIILSG 605
Query: 269 TPFQNNFQELENTLSLV-RQEFGEVLRTVRKSGREISKAKHASL----ISSIGRCANHRD 323
TP QNN EL + V G ++ + I + +A+ + + +CA
Sbjct: 606 TPMQNNLTELWSLFDFVFPMRLGTLVNFRNQFEFPIRQGGYANASNLQVQTAAKCA---- 661
Query: 324 DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV---EGVKSFV 380
+ LK+ I+P++ + LP V+ + + Q++ +A E +KS +
Sbjct: 662 ----ETLKDAISPYLLQRFKIDVAADLPKKSEQVLFCKLTKPQRQAYEAFLGSEEMKSIL 717
Query: 381 ----ELNYCVSLLSV---HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLI---L 430
++ + V +L HP D+ + KL +G K+ + + L
Sbjct: 718 NGRRQVLFGVDILRKICNHP-----------DLQNHKLMSSTTGYGSGSKSGKMQVVKSL 766
Query: 431 LEL--STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN 488
LEL T K L+F+Q+ ++++ L N G MDG ++ RQ+ ++ N
Sbjct: 767 LELWKDTGHKTLLFTQH----RIMLDILEKFVNSLSGFSYRRMDGTTPIQHRQAMVDEFN 822
Query: 489 -DPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVY 547
DPS + L +TK G+NL GA RV++ D WNP + QA RA+RLGQKR V VY
Sbjct: 823 NDPS--LHVFLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDVQARERAWRLGQKRDVTVY 880
Query: 548 HLITSETLEWDKLRRQARKVWWSNMVF 574
L+T+ T+E RQ K + +N +
Sbjct: 881 RLMTAGTIEEKIYHRQIFKQFLTNKIL 907
>gi|414586257|tpg|DAA36828.1| TPA: hypothetical protein ZEAMMB73_340761 [Zea mays]
Length = 1048
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 143/584 (24%), Positives = 240/584 (41%), Gaps = 119/584 (20%)
Query: 36 NSRDSGFDSQTG--CDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDE 93
N+ D G++ DP A + +P + K +F HQREG ++W
Sbjct: 305 NAEDVGWEKTEDFKMDPTGTAATSKPYKLPGKIFKMLFAHQREGLRWLW----------- 353
Query: 94 LKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFK 153
+ + TGG I+ G GKT FL R +I+AP+++L W +E
Sbjct: 354 VLHCRGTGG----ILGDDMGLGKTMQVAAFLAGLFHSRLVKRVLIVAPKTLLAHWTKELS 409
Query: 154 KWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKL-YSWKMGTGILGLS 212
G+ + + P + IR +L Y++K G GIL +
Sbjct: 410 IVGLKEKIRDYSGPSTN-----------------------IRNYELQYAFKEG-GILITT 445
Query: 213 YRLFE---KLVSGDELSGILLD------LPGLFVFDEGHTPRNDDTCMFKALSRIKTRRR 263
Y + KL+ G+ + D L + DEGH +N+ T ++L I R
Sbjct: 446 YDIVRNNYKLIRGNSYNNSNDDDDEEGTLWNYVILDEGHLIKNNKTQRAQSLYEIPCAHR 505
Query: 264 IILSGTPFQNNFQELENTLSLV-------RQEFGEVLRTVRKSGREI-SKAKHASLISSI 315
I++SGTP QNN +E+ + +Q+F T G + + A+ + S++
Sbjct: 506 IVISGTPIQNNLKEMWTLFNFCCPDVLGDKQQFKIRYETAILRGNDKNATAREKHVGSNV 565
Query: 316 GRCANHRDDEKLKELKEKIAPF--------VNVHKGTVLQESLPGLRHSVVILQPDEFQK 367
KEL+E+I P+ V G +++L +V L+ Q+
Sbjct: 566 A-----------KELRERIKPYFLRRLKSEVVFDTGASEEKTLAKKNELIVWLKLTPCQR 614
Query: 368 RLCK----------AVEGVKSFVELNYCVSLLSVHPSLLPQQ------------------ 399
+L + A++ S + + + HP LL ++
Sbjct: 615 KLYEAFLNSELVHLALQPKASPLAAITILKKICDHPLLLTKKGAEGVLEGMGEMLNDQDI 674
Query: 400 -FFESFDVDSAKLAR----LKLDPEAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLI 452
E ++ A +A L++ + K F++ LL + VL+FSQ + L LI
Sbjct: 675 GMVEKMAMNLADMAHDDNALEVGQDVSCKLSFIMSLLRNLVGEGHHVLIFSQTRKMLNLI 734
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
E + EG L +DG V R+ + + A + L +T+ G+ L
Sbjct: 735 QEAI-----ILEGYAFLRIDGTTKVSDRERIVKDFQE-GCGAPVFLLTTQVGGLGLTLTK 788
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
A+RV+++D WNP + Q++ RAYR+GQ + V VY L+TS T+E
Sbjct: 789 ATRVIVVDPAWNPSTDNQSVDRAYRIGQTKNVIVYRLMTSATIE 832
>gi|430820709|ref|ZP_19439332.1| Snf2 family protein [Enterococcus faecium E0045]
gi|430829171|ref|ZP_19447268.1| Snf2 family protein [Enterococcus faecium E0269]
gi|431217862|ref|ZP_19501283.1| Snf2 family protein [Enterococcus faecium E1620]
gi|430439255|gb|ELA49621.1| Snf2 family protein [Enterococcus faecium E0045]
gi|430481251|gb|ELA58408.1| Snf2 family protein [Enterococcus faecium E0269]
gi|430569777|gb|ELB08763.1| Snf2 family protein [Enterococcus faecium E1620]
Length = 1064
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 126/515 (24%), Positives = 221/515 (42%), Gaps = 92/515 (17%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P+ + M +Q++GF W + G G I++ G GKT T+
Sbjct: 604 LPKGLNATMRDYQKQGFR--WLKMLGHYQF-------------GGILADEMGLGKTLQTI 648
Query: 122 VFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181
FL + + +I+AP S++ W+ E +K+ P LS + ++
Sbjct: 649 AFLLSEKEERKSFSALIVAPASLIYNWQAEVRKFA----------PSLS-------IQVI 691
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEG 241
+ K+ R ++ T I SY + ++ + I + DE
Sbjct: 692 NGNKKEREEL----------LAKDTDIRVTSYASLRQDLANYQSQKI-----DYLILDEA 736
Query: 242 HTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301
+N T +AL + +R LSGTP +NN +EL + + + F + R
Sbjct: 737 QMIKNSSTKTAQALRELAVPQRFALSGTPIENNLEELWSLFATIMPGFF----PTKTKFR 792
Query: 302 EISKAKHASLISSIGRCANHRDDEK--LKELKEK----IAPFVNVHKGTVLQESLPGLRH 355
E++ + A +I R R D++ LK+L EK + + + TV L +R
Sbjct: 793 ELAAEEIAQMI----RPFILRRDKQTVLKDLPEKTEMNLYSALTEEQKTVYLAYLRQMRE 848
Query: 356 SVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLK 415
+ + + F+K + G+ ++ C P+ F E + S KL ++K
Sbjct: 849 EITSMDSEAFKKNRIGILAGLTRLRQI--CCD---------PRLFIEDYQGGSGKLEQVK 897
Query: 416 LDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475
L++ +VL+FSQ+ LT++ E+L G Y+ G
Sbjct: 898 D-----------LLVAAKENKRRVLLFSQFTGMLTILQEELAEL-----GISTFYLRGST 941
Query: 476 DVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535
+ R S ++ N + + + L S KA G+NL GA V+L D+ WNP +E QA RA
Sbjct: 942 KPQDRLSMVDAFN--AGEKDVFLISLKAGGTGLNLTGADTVILYDLWWNPAIEEQAAGRA 999
Query: 536 YRLGQKRVVHVYHLITSETLE--WDKLRRQARKVW 568
+R+GQK VV V+ +I+ T+E D L+++ R+++
Sbjct: 1000 HRIGQKNVVEVWRMISEGTIEERMDSLQQEKRELF 1034
>gi|134081405|emb|CAK46446.1| unnamed protein product [Aspergillus niger]
Length = 1223
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 142/507 (28%), Positives = 223/507 (43%), Gaps = 73/507 (14%)
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA-PRSMLLTWEEEFKKWGIDIPFYN 163
G II G GKT + FL RPVI+ P +++ W EF +W P +
Sbjct: 446 GGIIGDEMGLGKTIQVISFLAGLHYSKKLTRPVIVVCPATVMKQWVNEFHRW---WPPFR 502
Query: 164 LNKPELSG-------KENNGAVALMD---NRKRGRG-KVGLIRYVKLYSWKMGTG-ILGL 211
++ SG E++ AL+ N RG GL K+ + G +L
Sbjct: 503 VSILHTSGSGMVNIRNESSREDALLSQAWNASSTRGMPSGLKAARKVVKRVVEEGHVLVT 562
Query: 212 SYRLFEKLVSGDELSGILLDLP---GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSG 268
+Y + S L +P G V DEGH RN +T + ++T RIILSG
Sbjct: 563 TYSGLQTYAS--------LVIPIEWGCAVLDEGHKIRNPNTSITIHCKELRTPHRIILSG 614
Query: 269 TPFQNNFQELENTLSLV-RQEFGEVLRTVRKSGREISKAKHASL----ISSIGRCANHRD 323
TP QNN EL + V G ++ + I + +A+ + + +CA
Sbjct: 615 TPMQNNLTELWSLFDFVFPMRLGTLVNFRNQFEFPIRQGGYANASNLQVQTAAKCA---- 670
Query: 324 DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV---EGVKSFV 380
+ LK+ I+P++ + LP V+ + + Q++ +A E +KS +
Sbjct: 671 ----ETLKDAISPYLLQRFKIDVAADLPKKSEQVLFCKLTKPQRQAYEAFLGSEEMKSIL 726
Query: 381 ----ELNYCVSLLSV---HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLI---L 430
++ + V +L HP D+ + KL +G K+ + + L
Sbjct: 727 NGRRQVLFGVDILRKICNHP-----------DLQNHKLMSSTTGYGSGSKSGKMQVVKSL 775
Query: 431 LEL--STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN 488
LEL T K L+F+Q+ ++++ L N G MDG ++ RQ+ ++ N
Sbjct: 776 LELWKDTGHKTLLFTQH----RIMLDILEKFVNSLSGFSYRRMDGTTPIQHRQAMVDEFN 831
Query: 489 -DPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVY 547
DPS + L +TK G+NL GA RV++ D WNP + QA RA+RLGQKR V VY
Sbjct: 832 NDPS--LHVFLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDVQARERAWRLGQKRDVTVY 889
Query: 548 HLITSETLEWDKLRRQARKVWWSNMVF 574
L+T+ T+E RQ K + +N +
Sbjct: 890 RLMTAGTIEEKIYHRQIFKQFLTNKIL 916
>gi|433837|emb|CAA53930.1| unnamed protein product [Saccharomyces cerevisiae]
gi|536326|emb|CAA85017.1| RDH54 [Saccharomyces cerevisiae]
Length = 958
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 143/569 (25%), Positives = 247/569 (43%), Gaps = 77/569 (13%)
Query: 72 PHQREGFEFIWKNIAG-------GIDLDELKNS---TSTGGGNGCIISHAPGTGKTGLTL 121
PHQREG +F++ + G D+D S + +GC+++ G GKT +++
Sbjct: 298 PHQREGVKFMYDCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLMSI 357
Query: 122 VFL----------------QAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNL 164
+ Q+ + L C+ + ++ P +++ W+ EF KW NL
Sbjct: 358 TLIWTLIRQTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGNWKREFGKW------LNL 411
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
++ G + L K+ + ++K+ + +L + Y EKL+S E
Sbjct: 412 SRI--------GVLTLSSRNSPDMDKMAVRNFLKV---QRTYQVLIIGY---EKLLSVSE 457
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
L + V DEGH +N + + L + RR+++L+GTP QN+ E +
Sbjct: 458 ELEKNKHLIDMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDF 517
Query: 285 VRQE-FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
+ G R+ I++A+ + + + +E+ KE+ E F+
Sbjct: 518 INPGILGSFASFKRRFIIPITRARDTA--NRYNEELLEKGEERSKEMIEITKRFILRRTN 575
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAV-EGVK-SFVELNYCVSL--------LSVHP 393
+L++ LP ++ +P Q K + +G + F +L + SL + P
Sbjct: 576 AILEKYLPPKTDIILFCKPYSQQILAFKDILQGARLDFGQLTFSSSLGLITLLKKVCNSP 635
Query: 394 SLLPQQ-FFESFDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPL 449
L+ +++S D+ +G K + L+ LLE T EKV+V S Y + L
Sbjct: 636 GLVGSDPYYKSHIKDTQSQDSYSRSLNSG-KLKVLMTLLEGIRKGTKEKVVVVSNYTQTL 694
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGI 508
+I E L + G +DG K+R S + N +P+ L S K+ G+
Sbjct: 695 DII-ENLMNM----AGMSHCRLDGSIPAKQRDSIVTSFNRNPAIFG--FLLSAKSGGVGL 747
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NLVG SR++L D WNP V+ QA+SR +R GQK+ +Y L+T+ ++ L+RQ K
Sbjct: 748 NLVGRSRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNS 807
Query: 569 WSNMVFPSSD----GGGNDQTTASEPLED 593
S S+ ND E L+D
Sbjct: 808 LSQKFLGDSEMRNKESSNDDLFNKEDLKD 836
>gi|409045016|gb|EKM54497.1| hypothetical protein PHACADRAFT_258377 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1433
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 138/490 (28%), Positives = 217/490 (44%), Gaps = 80/490 (16%)
Query: 100 TGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGID 158
+ G NG I++ G GKT ++ FL + P ++I P S + W+ +F WG D
Sbjct: 394 SNGENG-ILADEMGLGKTVQSVSFLAYLFHEMRQFGPFLVIVPLSTITAWQSQFATWGPD 452
Query: 159 IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKL--YSWKMGTGILGLSYRLF 216
LN G N V IR + + K+ +L +Y L
Sbjct: 453 -----LNVITYIGNANAREV---------------IRTFEFGPSNKKLKMNVLLTTYEL- 491
Query: 217 EKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQ 276
L ELS I + DE H +N ++ +++AL +++++GTP QNN +
Sbjct: 492 -TLRDARELSDIKWQV---LAVDEAHRLKNSESQLYEALRAFSAASKVLITGTPLQNNVK 547
Query: 277 ELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKI-A 335
EL LSL+ E + +++ H +EK+KEL +++ A
Sbjct: 548 EL---LSLMHFLMPEKFHLSNEF--DLTDVDH---------------EEKIKELHKQLEA 587
Query: 336 PFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLS 390
+ K VL SLP LR + LQ ++ L K +G+ N +SLL+
Sbjct: 588 LMLRRLKKDVLT-SLPTKSERILRVEMSALQTHLYKNILTKNFQGLIKSANGNTNISLLN 646
Query: 391 V---------HPSLLPQQFFESFDVDSAK----LARLKLDPEAGIKTRFLLILLELSTNE 437
+ HP L FE + +SA L L ++ + LL L ++
Sbjct: 647 IAMELKKAANHPYL-----FEGVEPESATSEELLKGLVMNSGKIVLLDKLLARLRQDSH- 700
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ + L L+ E ++ R G + +DG + R+ SI N P S
Sbjct: 701 RVLIFSQMVRMLDLLSEYMQLR-----GYQFQRLDGMVSSEARKKSIAHFNAPGSPDFAF 755
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L ST+A GINL A V++ D WNP + QA++RA+R+GQK V VY ++ +T+E
Sbjct: 756 LLSTRAGGLGINLETADTVIIFDSDWNPQNDLQAMARAHRIGQKSHVSVYRFVSKDTMEE 815
Query: 558 DKLRRQARKV 567
D L R +K+
Sbjct: 816 DVLERAKKKM 825
>gi|414586258|tpg|DAA36829.1| TPA: hypothetical protein ZEAMMB73_340761 [Zea mays]
Length = 961
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 143/584 (24%), Positives = 240/584 (41%), Gaps = 119/584 (20%)
Query: 36 NSRDSGFDSQTG--CDPFTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDE 93
N+ D G++ DP A + +P + K +F HQREG ++W
Sbjct: 305 NAEDVGWEKTEDFKMDPTGTAATSKPYKLPGKIFKMLFAHQREGLRWLW----------- 353
Query: 94 LKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFK 153
+ + TGG I+ G GKT FL R +I+AP+++L W +E
Sbjct: 354 VLHCRGTGG----ILGDDMGLGKTMQVAAFLAGLFHSRLVKRVLIVAPKTLLAHWTKELS 409
Query: 154 KWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKL-YSWKMGTGILGLS 212
G+ + + P + IR +L Y++K G GIL +
Sbjct: 410 IVGLKEKIRDYSGPSTN-----------------------IRNYELQYAFKEG-GILITT 445
Query: 213 YRLFE---KLVSGDELSGILLD------LPGLFVFDEGHTPRNDDTCMFKALSRIKTRRR 263
Y + KL+ G+ + D L + DEGH +N+ T ++L I R
Sbjct: 446 YDIVRNNYKLIRGNSYNNSNDDDDEEGTLWNYVILDEGHLIKNNKTQRAQSLYEIPCAHR 505
Query: 264 IILSGTPFQNNFQELENTLSLV-------RQEFGEVLRTVRKSGREI-SKAKHASLISSI 315
I++SGTP QNN +E+ + +Q+F T G + + A+ + S++
Sbjct: 506 IVISGTPIQNNLKEMWTLFNFCCPDVLGDKQQFKIRYETAILRGNDKNATAREKHVGSNV 565
Query: 316 GRCANHRDDEKLKELKEKIAPF--------VNVHKGTVLQESLPGLRHSVVILQPDEFQK 367
KEL+E+I P+ V G +++L +V L+ Q+
Sbjct: 566 A-----------KELRERIKPYFLRRLKSEVVFDTGASEEKTLAKKNELIVWLKLTPCQR 614
Query: 368 RLCK----------AVEGVKSFVELNYCVSLLSVHPSLLPQQ------------------ 399
+L + A++ S + + + HP LL ++
Sbjct: 615 KLYEAFLNSELVHLALQPKASPLAAITILKKICDHPLLLTKKGAEGVLEGMGEMLNDQDI 674
Query: 400 -FFESFDVDSAKLAR----LKLDPEAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLI 452
E ++ A +A L++ + K F++ LL + VL+FSQ + L LI
Sbjct: 675 GMVEKMAMNLADMAHDDNALEVGQDVSCKLSFIMSLLRNLVGEGHHVLIFSQTRKMLNLI 734
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
E + EG L +DG V R+ + + A + L +T+ G+ L
Sbjct: 735 QEAI-----ILEGYAFLRIDGTTKVSDRERIVKDFQE-GCGAPVFLLTTQVGGLGLTLTK 788
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
A+RV+++D WNP + Q++ RAYR+GQ + V VY L+TS T+E
Sbjct: 789 ATRVIVVDPAWNPSTDNQSVDRAYRIGQTKNVIVYRLMTSATIE 832
>gi|238624120|ref|NP_001121770.2| chromodomain helicase DNA binding protein 1 [Danio rerio]
Length = 1693
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 129/500 (25%), Positives = 219/500 (43%), Gaps = 75/500 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W P
Sbjct: 486 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQLWA---PL 542
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
N+ V L D R + ++ + ++ IL +Y + K S
Sbjct: 543 MNV------------VVYLGD--INSRNMIRTHEWMHPQTKRLKLNILLTTYEILLKDKS 588
Query: 222 GDELSGILLDLPGLFV-FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELEN 280
L ++ F+ DE H +NDD+ ++K + K+ R++++GTP QN+ +EL +
Sbjct: 589 ------FLGNVSWAFIGVDEAHRLKNDDSLLYKTMIEFKSNHRLLITGTPLQNSLKELWS 642
Query: 281 TLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNV 340
L + E + E+ + +H GR D L +++ PF+
Sbjct: 643 LLHFIMPE--------KFHSWEMFEEEHGK-----GR------DSGYTSLHKELEPFLLR 683
Query: 341 HKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-----FVELN 383
+++SLP LR + +Q ++ K L K +G S +EL
Sbjct: 684 RVKKDVEKSLPAKVEQILRVEMSAVQKQYYKWILTRNYKALSKGTKGSTSGFLNIMMELK 743
Query: 384 YCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFS 443
C + H L+ F L L I LL+ L+ +VL+FS
Sbjct: 744 KCCN----HCYLIKPPDDNEFYNRQEGLQHLVRSSGKLILLDKLLVRLK-ERGHRVLIFS 798
Query: 444 QYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLAST 501
Q + L ++ E L++R + L+ +DG + R+ +++ N S+ L ST
Sbjct: 799 QMVRMLDILAEYLKYR-------QFLFQRLDGSIKGEMRKQALDHFNADGSEDFCFLLST 851
Query: 502 KACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561
+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T ++E + +
Sbjct: 852 RAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEEIIE 911
Query: 562 RQARKVWWSNMVFPSSDGGG 581
R +K+ ++V D G
Sbjct: 912 RAKKKMVLDHLVIQRMDTTG 931
>gi|157818785|ref|NP_001100935.1| chromodomain-helicase-DNA-binding protein 1 [Rattus norvegicus]
gi|149047090|gb|EDL99810.1| chromodomain helicase DNA binding protein 1 (predicted) [Rattus
norvegicus]
Length = 1711
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 130/507 (25%), Positives = 213/507 (42%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 497 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 554
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
N V L G + ++ + W ++ IL +Y +
Sbjct: 555 -------------NAVVYL--------GDINSRNMIRTHEWMHPQTKRLKFNILLTTYEI 593
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
L L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 594 L--LKDKAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 648
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 649 KELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHK 686
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 687 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 746
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + H L+ F L L + + L++
Sbjct: 747 LNIMMELKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRER 801
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 802 GNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRRQALDHFNAEGSED 855
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 856 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 915
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 916 VEEDILERAKKKMVLDHLVIQRMDTTG 942
>gi|330793226|ref|XP_003284686.1| hypothetical protein DICPUDRAFT_53111 [Dictyostelium purpureum]
gi|325085384|gb|EGC38792.1| hypothetical protein DICPUDRAFT_53111 [Dictyostelium purpureum]
Length = 2666
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 127/498 (25%), Positives = 215/498 (43%), Gaps = 65/498 (13%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAY-MKLHPRCRPVIIAPRSMLLTWEEEFKKWG--IDI 159
G +++ G GKT T+ F+Q K+ + +I+AP S L W +EF KW +
Sbjct: 688 GRSSLLADEMGLGKTIQTIAFIQYLSQKVGIKGPFLIVAPLSTLGNWHKEFLKWTDMKTL 747
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219
+Y G ++ Y +K G +Y LFE L
Sbjct: 748 VYY--------------------------GSQETRSFISKYEFKAGKD----NY-LFEVL 776
Query: 220 VSGDEL----SGILLDLP-GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNN 274
++ E + + +P V DEGH +N+ + + L IKT +IL+GTP QN+
Sbjct: 777 LTTYETIMSDHSVFVRVPWRALVLDEGHRIKNEKSKVLSKLKSIKTEHSVILTGTPLQND 836
Query: 275 FQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKI 334
+EL L+ + E E S K S +S + + L+ +KE +
Sbjct: 837 MKELWTMLNFLD---PEKFDNCNDFLNEYSDLKEESQVSKLHQLLTPY---LLRRMKENV 890
Query: 335 APFVNVHKGTVLQESLPGLR---HSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSV 391
+ + + TV+Q L + + ++ + EF R + + + + +
Sbjct: 891 ELSIPIKEETVIQVELSSTQKTYYRAILERNREFLARGIRHKSNLPKLSNIMIQIRKVCN 950
Query: 392 HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL------STNEKVLVFSQY 445
HP L+P E V K++ E +++ L+L++ + +VL+FSQ
Sbjct: 951 HPFLIPGA--EESIVKQEKISGEDELGELLVRSSSKLVLVDKLLQRLKAEGHQVLIFSQM 1008
Query: 446 IEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKA 503
+E L ++ + L++R E Y +DG + RQ+SI+ D + + L ST+A
Sbjct: 1009 VESLNILEDYLQYR-------EYTYERLDGSIKSEVRQASIDRFQDKEANRFVFLLSTRA 1061
Query: 504 CCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQ 563
GINL A V+L D WNP + QA +R +R+GQ V VY LIT T E
Sbjct: 1062 GGVGINLTTADTVILFDSDWNPQSDLQAQARCHRIGQTNNVKVYRLITRNTYEEYLFECA 1121
Query: 564 ARKVWWSNMVFPSSDGGG 581
+K+ ++V +++ G
Sbjct: 1122 TKKLLLDHIVLSTNNKKG 1139
>gi|357605668|gb|EHJ64730.1| putative Chromodomain helicase-DNA-binding protein Mi-2-like protein
[Danaus plexippus]
Length = 1963
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 134/517 (25%), Positives = 222/517 (42%), Gaps = 71/517 (13%)
Query: 99 STGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR-PVIIA-PRSMLLTWEEEFKKWG 156
S G G I++ G GKT T+ FL + K C+ P +++ P S ++ WE EF+ W
Sbjct: 734 SWGQGIDTILADEMGLGKTIQTVTFLYSLFK-EGHCKGPFLVSVPLSTIINWEREFELWA 792
Query: 157 ID---IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSY 213
D I + +EN + D RG + VK +L SY
Sbjct: 793 PDLYCITYVGDKDSRAVIRENE--LTFDDGANRGGRPSKIKSQVKF-------NVLLTSY 843
Query: 214 RLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQN 273
+L+S D +D + V DE H +++ + F+ L+ +++L+GTP QN
Sbjct: 844 ----ELISIDSTCLGSIDW-AVLVVDEAHRLKSNQSKFFRLLAGYHINYKLLLTGTPLQN 898
Query: 274 NFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEK 333
N +EL + L+ ++K K L + A+ +E++K L E
Sbjct: 899 NLEELFHLLNF------------------LNKDKFNDLAAFQNEFADVSKEEQVKRLHEM 940
Query: 334 IAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN-----YCVSL 388
+ P + + +++P +V ++ QK+ K + +++ LN VSL
Sbjct: 941 LGPHMLRRLKADVLKNMPAKSEFIVRVELSPMQKKYYKYI-LTRNYEALNPKSGGQTVSL 999
Query: 389 LSV---------HPSLLPQQFFESFDVDSAKLA-RLKLDPEAGIKTRFLLILLEL----- 433
L+V HP L P + A L + +A +K L+L+
Sbjct: 1000 LNVMMDLKKCCNHPYLFP------VAAEEAPLGPHGNYETQALVKASGKLVLMSKMLKQL 1053
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L ++ + L EG + +DG RQ +I+ N P +
Sbjct: 1054 KEQGHRVLIFSQMTKMLDILEDFLEG-----EGYKYERIDGGITGTIRQEAIDRFNAPGA 1108
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q + L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1109 QQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1168
Query: 553 ETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASE 589
++E + RK+ +++V GG T E
Sbjct: 1169 NSVEERVTQVAKRKMMLTHLVVRPGMGGKGANFTKQE 1205
>gi|326426828|gb|EGD72398.1| chromodomain helicase DNA binding protein 1 [Salpingoeca sp. ATCC
50818]
Length = 1534
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 129/501 (25%), Positives = 221/501 (44%), Gaps = 69/501 (13%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWG--IDI 159
GN I++ G GKT ++VFL + P +I+ P S ++ W E KW ++
Sbjct: 601 GNSVILADEMGLGKTIQSIVFLSYLFNVQRVYGPFLIVVPLSTIMAWSRELHKWAPAMNT 660
Query: 160 PFYNLNKPELSGKENNGAVALMDNR-KRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEK 218
Y NK + +E A+ D+ RGK+ + Y K+ T +
Sbjct: 661 IVYVGNK---ASRE-----AIRDHEFYNDRGKIKFNVLLTTYE-KVNTNL---------- 701
Query: 219 LVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
D+L I V DE H +N ++ + +ALS ++ R++++GTP QN+ +EL
Sbjct: 702 ----DDLQQIRW---AALVVDEAHRLKNHESMLHQALSDLRHDFRLLVTGTPLQNSMKEL 754
Query: 279 ENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
L + + RT + E + ++ L ANH+ L+ L E I P++
Sbjct: 755 WALLHFI------MPRTF--ASWEEFEERYGGLGDDA--AANHK---MLQTLHEDIKPYL 801
Query: 339 NVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV------------EGVKS-----FVE 381
+++SLP ++ + + QK++ K + +G KS +E
Sbjct: 802 IRRVKKDVEKSLPKKVEKILRVGLSQSQKQIYKHIITKNYTALRSLKKGQKSSLVNVIME 861
Query: 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLV 441
L C + H SL+ Q + DV + R L + L+ +VL+
Sbjct: 862 LKKCCN----HASLIDQAPLSNPDVSPTENMRNLLKGSGKLILLDKLLQRLHDKGHRVLI 917
Query: 442 FSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAST 501
FSQ + L ++ L + G +DG ++R+ +I+ N P S + ST
Sbjct: 918 FSQMVLMLDVLATYLMMK-----GYPFQRLDGNIPNERRKQAIDHFNAPGSADFCFILST 972
Query: 502 KACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561
+A G+NL A V++ D WNP + QA +RA+R+GQ R V++Y ++ T+E D L
Sbjct: 973 RAGGLGVNLATADTVIIFDSDWNPQNDLQAQARAHRIGQTRQVNIYRFVSKNTVEEDILE 1032
Query: 562 RQARKVWWSNMVFPSSDGGGN 582
R +K+ ++V D G+
Sbjct: 1033 RAKKKMVLDHLVIQRMDTTGS 1053
>gi|432114989|gb|ELK36631.1| Chromodomain-helicase-DNA-binding protein 1 [Myotis davidii]
Length = 1841
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 131/507 (25%), Positives = 213/507 (42%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 538 GNSCILADEMGLGKTIQTISFLNYLFNEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 595
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
N V L D R ++ + W ++ IL +Y +
Sbjct: 596 -------------NAVVYLGDINSRN--------MIRTHEWMHPQTKRLKFNILLTTYEI 634
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
L L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 635 L--LKDKAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 689
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 690 KELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHK 727
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 728 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 787
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + H L+ F L L + + L++
Sbjct: 788 LNIMMELKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRER 842
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 843 GNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSED 896
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 897 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 956
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 957 VEEDILERAKKKMVLDHLVIQRMDTTG 983
>gi|423613354|ref|ZP_17589214.1| hypothetical protein IIM_04068 [Bacillus cereus VD107]
gi|401242516|gb|EJR48891.1| hypothetical protein IIM_04068 [Bacillus cereus VD107]
Length = 918
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 132/515 (25%), Positives = 223/515 (43%), Gaps = 97/515 (18%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
VP ++ + P+Q+ G E++ + L EL G G +++ G GK+ T+
Sbjct: 443 VPSSLQATLRPYQQHGIEWL-------LYLREL--------GFGALLADDMGLGKSIQTI 487
Query: 122 VFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+L + + + P +I+AP S+L W++EF+++ P L + + G+
Sbjct: 488 AYLLYAKENNLQTGPALIVAPTSVLGNWQKEFERFA----------PNLRVQLHYGS--- 534
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
NR + ++ ++ SY L + + +ELS + D + DE
Sbjct: 535 --NRAKEESFKDFLQ---------SADVVLTSYALAQ--LDEEELSTLCWDA---VILDE 578
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKS 299
+N T KA+ ++ +I L+GTP +N EL + + + G + + R+
Sbjct: 579 AQNIKNPHTKQSKAVRNLQANHKIALTGTPMENRLAELWSIFDFINHGYLGSLGQFQRRF 638
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV--NVHKGTVLQESLPGLRHSV 357
I K RD+ K+++++ I+PF+ K + +LP +
Sbjct: 639 VTPIEK---------------DRDEGKIQQVQRFISPFLLRRTKKDQTVALNLPDKQEQK 683
Query: 358 VILQPDEFQKRL--------CKAVEGVKSFVELNYCVSLLSV------HPSLLPQQFFES 403
Q L + VEG+ + + +L+ HP+L
Sbjct: 684 AYCPLTGEQASLYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALY------- 736
Query: 404 FDVDSAKLARLKLDPEAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLIMEQLRHRFN 461
K A + E +KT+ L+ L+E NE L+F+QYI ++ L F
Sbjct: 737 -----LKEAEPQNIVERSMKTKTLMELIENIKDQNESCLIFTQYIGMGNMLKSVLEETF- 790
Query: 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDV 521
GQ VL+++G K+R I + + I + S KA G+NL A+ V+ D
Sbjct: 791 ---GQRVLFLNGSVPKKERDKMIEQFQNGTYD--IFILSLKAGGTGLNLTAANHVIHYDR 845
Query: 522 VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
WNP VE QA RAYR+GQKR VHV+ LIT+ TLE
Sbjct: 846 WWNPAVENQATDRAYRIGQKRFVHVHKLITTGTLE 880
>gi|349602828|gb|AEP98845.1| Chromodomain-helicase-DNA-binding protein 1-like protein, partial
[Equus caballus]
Length = 911
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 130/507 (25%), Positives = 212/507 (41%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 40 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 97
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
N V L D R ++ + W ++ IL +Y +
Sbjct: 98 -------------NAVVYLGDINSRN--------MIRTHEWMHPQTKRLKFNILLTTYEI 136
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
L L G+ G+ DE H +N D+ ++K L K+ R++++GTP QN+
Sbjct: 137 L--LKDKAFLGGLNWAFIGV---DEAHRLKNGDSLLYKTLIDFKSNHRLLITGTPLQNSL 191
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 192 KELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHK 229
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 230 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 289
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + H L+ F L L + + L++
Sbjct: 290 LNIMMELKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRER 344
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 345 GNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSED 398
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 399 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 458
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 459 VEEDILERAKKKMVLDHLVIQRMDTTG 485
>gi|409051824|gb|EKM61300.1| hypothetical protein PHACADRAFT_180431 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1845
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 125/524 (23%), Positives = 227/524 (43%), Gaps = 92/524 (17%)
Query: 106 CIISHAPGTGKTGLTLVFL----QAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGID-- 158
CI++ G GKT FL + + KL P +++ P S + W E ++W +
Sbjct: 915 CILADEMGLGKTVQIATFLGQIIKGFDKLPFSAYPALVVVPNSTITNWIRELERWAPNLR 974
Query: 159 -IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL-- 215
+PFY D++ R +IR +LY G + +
Sbjct: 975 VVPFYG------------------DSKARE-----IIRQYELYHPAAQAKTTGAKFHVLV 1011
Query: 216 --FEKLVSGDELSGILLDLP--GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPF 271
+E + ++ + +P + V DEG ++D + +FK L + T RIIL+GTP
Sbjct: 1012 TTYETFTNARDIGTLFKAMPRWEVLVVDEGQRLKSDSSLLFKKLKELNTIHRIILTGTPL 1071
Query: 272 QNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELK 331
NN +EL N ++ + L T+ K E++ +EK++EL
Sbjct: 1072 NNNIRELFNLMNFLNPLEWNNLETLSKEHEELT-------------------EEKVRELH 1112
Query: 332 EKIAP-FVNVHKGTVLQESLPGLRHSVVI-----LQPDEFQKRLCKAVEGVKSFVELNYC 385
++ P F+ K VLQ LP +V LQ + ++ L + V+ ++S + LN
Sbjct: 1113 TRLRPYFLRRIKSEVLQ--LPPKNEVIVPVSMAPLQKEVYRSLLSQNVDVLRS-IALNVA 1169
Query: 386 VSLLSVHPSL---------------LPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLIL 430
++ ++ L + S D++ L+ ++ E I LI+
Sbjct: 1170 TGGSRINAAVKKSNMNNILMQLRKCLQHPYLVSADIEPPGLSSKEVH-ERLIGASAKLIM 1228
Query: 431 LEL------STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSI 484
L++ + +VL+FSQ+ L ++ + F EG + L +DG +RQ +
Sbjct: 1229 LKMMLPKLKARGHRVLLFSQFSIALNVVED-----FLVGEGIKYLRLDGSTKQAERQKDM 1283
Query: 485 NVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVV 544
+ N P S I + ST+A GINL A V++ D +NP + QAI+RA+R GQ++
Sbjct: 1284 DEFNKPDSDIFIYILSTRAGGVGINLTTADTVIIFDPDFNPHQDLQAIARAHRYGQQKTC 1343
Query: 545 HVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTAS 588
V+ + ++ E ++ +K+ +++ D +++ S
Sbjct: 1344 LVFKFMVKDSAEERIMQTGKKKLVLDHLIVQKMDDKDSEEDVKS 1387
>gi|189204870|ref|XP_001938770.1| DNA repair and recombination protein RAD26 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985869|gb|EDU51357.1| DNA repair and recombination protein RAD26 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1246
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 137/548 (25%), Positives = 235/548 (42%), Gaps = 83/548 (15%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
+P D+ +F +Q+ G +++W+ + + G II G GKT +
Sbjct: 408 IPGDIYPALFDYQKTGVQWLWELYSQNV---------------GGIIGDEMGLGKTIQAI 452
Query: 122 VFLQAYMKLHPRCRPVII-APRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+ +PVI+ P +++ W EF +W P ++ SG +
Sbjct: 453 GLVAGLHYSKKLTKPVIVVCPATVMKQWVNEFHRW---WPALRVSILHTSGS------GM 503
Query: 181 MDNRKRGRGKVGL-IRYVKLYSWKMGTGILGLSYRLFEKL----------VSGDELSGIL 229
+D R+ R + + +R Y + TG + ++ EK+ SG +
Sbjct: 504 LDTRREDRLEQEMELRKYGDYDTTL-TGAGKAAKKVLEKVKRDGHVLVTTYSGLQTYAEF 562
Query: 230 LDLPGLF---VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV- 285
L +P + + DEGH RN +T + ++T RIILSGTP QNN EL + V
Sbjct: 563 L-IPTEWECAILDEGHKIRNPNTAITIHCKELRTPNRIILSGTPMQNNLTELWSLFDFVF 621
Query: 286 RQEFGEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPFVNVH 341
G ++ + I + +A+ + +CA + LK+ ++P++
Sbjct: 622 PMRLGTLVNFRNQFEFPIKRGGYANASNLEFETAVQCA--------ETLKDAVSPYLLQR 673
Query: 342 KGTVLQESLPGLRHSVVILQPDEFQKRLCKAV---EGVKSFV----ELNYCVSLLSV--- 391
+ LP + V+ + Q++ +A E +KS ++ + V L
Sbjct: 674 FKVDVATDLPQKKEQVLFCKLTRQQRQAYEAFLASEDMKSIANGKRQMLFGVDFLRKICN 733
Query: 392 HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL--STNEKVLVFSQY---I 446
HP L + S K +P K + + LL L K L+F+Q+ +
Sbjct: 734 HPDLTEHKTL------SKKPGYDYGNPNRSGKMQVVKELLSLWKKGGHKTLLFAQHRIML 787
Query: 447 EPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCE 506
+ L + QL NWR MDG +K RQ+ ++ N+ + + L +TK
Sbjct: 788 DILQKFISQLPD-INWRR------MDGDTPIKDRQNLVDEFNN-NPDLHVFLLTTKVGGL 839
Query: 507 GINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
G+NL GA+RV++ D WNP + QA R++RLGQKR V +Y L+++ T+E RQ K
Sbjct: 840 GVNLTGANRVIIYDPDWNPSTDIQARERSWRLGQKREVEIYRLMSAGTIEEKIYHRQIFK 899
Query: 567 VWWSNMVF 574
+ +N V
Sbjct: 900 QFLTNKVL 907
>gi|374340659|ref|YP_005097395.1| DNA/RNA helicase [Marinitoga piezophila KA3]
gi|372102193|gb|AEX86097.1| DNA/RNA helicase, superfamily II, SNF2 family [Marinitoga
piezophila KA3]
Length = 988
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 125/491 (25%), Positives = 213/491 (43%), Gaps = 100/491 (20%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYN 163
NG I++ G GKT T+ + + +K R + +IIAPRS++ W E K+ +I +Y
Sbjct: 568 NG-ILADDMGLGKTLQTIALILS-LKRKDR-KFLIIAPRSVIYNWANEIDKFTSNIKYYI 624
Query: 164 LNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD 223
+ + E+ + N R S +
Sbjct: 625 YHNSQKDIPEDTDVIITTYNTLRN---------------------------------SIE 651
Query: 224 ELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS 283
EL + DE +ND+T ++KA+ ++K+ ++ L+GTP +N+ +L N
Sbjct: 652 ELKKTKY---FYIILDEAQFIKNDETKLYKAIRKLKSNHKLALTGTPLENSLTDLYNIFE 708
Query: 284 -LVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV-NVH 341
L+ FG +RK N+ + E ++ LK+KI PF+
Sbjct: 709 FLMPGFFGNKKDFLRK--------------------YNYANKESIERLKKKIHPFILRRT 748
Query: 342 KGTVLQESLPGLRHSVVILQPDEFQKRLCKAV-----------EGVKSFVELNYCVSLLS 390
K VL+E LP + + + QK++ + +G +F L + L
Sbjct: 749 KENVLKE-LPPKTEEYIFNEMTQHQKKIYHQIAEEYRQKIAMSQGTINFSVLEGLLRLRQ 807
Query: 391 V--HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEP 448
+ HP LL +++S+K K F+ +LE N K+++FSQ+++
Sbjct: 808 IVNHPKLL------GVNIESSKFNMFK---------NFIKEVLE--ENHKIVIFSQFVKM 850
Query: 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGI 508
+ IME+ W E +++ Y+ KKR + N+ ++ +I+L S KA G+
Sbjct: 851 IE-IMEE------WLEKEKIQYLKIIGKTKKRVEIVEEFNN-TNNIKILLVSLKAGGTGL 902
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
N+ GA V+ D WNP VE QA R YR+GQ + V VY IT E++E ++ + K
Sbjct: 903 NITGADYVIHYDPWWNPAVENQATDRVYRIGQNKPVFVYKFITRESIEEKIMKLKEAKED 962
Query: 569 WSNMVFPSSDG 579
N+ + G
Sbjct: 963 LYNLAISTEKG 973
>gi|440294401|gb|ELP87418.1| chromodomain helicase hrp1, putative [Entamoeba invadens IP1]
Length = 1234
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 138/500 (27%), Positives = 219/500 (43%), Gaps = 91/500 (18%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQ---AYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDI 159
G GCI++ G GKT + FL+ +Y KLH +I+ P M+ W E +W
Sbjct: 308 GRGCILADEMGLGKTVQVVTFLEHLHSYQKLHGPF--LIVMPLGMVEHWHREISEWT--- 362
Query: 160 PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGT--GILGLSYRLFE 217
+LN SG + +NRK VK Y W G + F
Sbjct: 363 ---DLNVILYSGSK--------ENRK----------LVKKYEWFYTDEEGNKNTNQTKFN 401
Query: 218 KLVSGDE-LSGILLDLPGL----FVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
+V+ E L DL + V DE +N D+ + K LS +KT +I+L+GTP Q
Sbjct: 402 VMVTTYETLIADFEDLQQISWFVVVIDEAQRLKNKDSKLLKTLSSLKTDHKILLTGTPIQ 461
Query: 273 NNFQELENTLSLVR-QEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELK 331
NN EL L+ + ++FG S E K G N + E++ EL+
Sbjct: 462 NNLGELWTLLNYIEPKKFG--------SLEEFDKM--------YGNIDN--NPEQVTELQ 503
Query: 332 EKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV-EGVKSFVE--------- 381
+ I PF+ + +++S+P +V+ ++ QK+ +A+ E + F+
Sbjct: 504 KSIKPFLLRRVKSDVEKSIPPKEETVIEVELTMVQKQYYRALYEKNREFLNKGCVGSNMP 563
Query: 382 --LNYCVSLLSV--HPSLLPQQFFESFDVDSAKLARLKLDPEAG----IKTRFLLILLE- 432
N + L V HP L+ V+ A+ + E IK+ L+LL+
Sbjct: 564 NLQNLMMQLRKVCNHPYLIS-------GVEEKDTAQFAENSEEYFKQLIKSSGKLVLLDK 616
Query: 433 -----LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVL 487
KVL+FSQ + L +I + L+++ G +DG RQ++I+
Sbjct: 617 LLPKLYEDKHKVLIFSQLKKVLNIIEKYLKYK-----GYLYERLDGSIRALDRQNAIDRF 671
Query: 488 NDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVY 547
+P + L T+A GINL A V++ D WNP + QA +R +R+GQK+ V VY
Sbjct: 672 MNPEMNKFVFLLCTRAGGFGINLSEADTVIIYDSDWNPQNDLQAQARCHRIGQKKEVKVY 731
Query: 548 HLITSETLEWDKLRRQARKV 567
L++ T E R ++K+
Sbjct: 732 RLVSKNTYERYMFERASKKL 751
>gi|434378361|ref|YP_006613005.1| helicase [Bacillus thuringiensis HD-789]
gi|401876918|gb|AFQ29085.1| helicase [Bacillus thuringiensis HD-789]
Length = 918
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 131/520 (25%), Positives = 223/520 (42%), Gaps = 107/520 (20%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
VP + + P+Q+ G E++ + L +L G G +++ G GK+ T+
Sbjct: 443 VPTSLNATLRPYQQHGIEWL-------LYLRKL--------GFGALLADDMGLGKSIQTI 487
Query: 122 VFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+L + + + P +I+AP S+L W++EF+++ P L + + G+
Sbjct: 488 SYLLYIKENNLKTGPALIVAPTSVLGNWQKEFERFA----------PNLCVQLHYGS--- 534
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
NR++G ++ ++ SY L + + +EL+ + D + DE
Sbjct: 535 --NREKGNSFEDFLQ---------SADVVLTSYALAQ--LDEEELTSLCWDA---VILDE 578
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKS 299
+N T KA+ ++ +I L+GTP +N EL + + + G + + R+
Sbjct: 579 AQNIKNPHTKQSKAVRNLQANHKIALTGTPMENRLAELWSIFDFINHGYLGSLGQFQRRF 638
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV--NVHKGTVLQESLPGLRHSV 357
I K RD+ K+++++ I+PF+ K + +LP +
Sbjct: 639 VTPIEK---------------DRDEGKIQQVQRFISPFLLRRTKKDQTVALNLPDKQEQK 683
Query: 358 VILQPDEFQKRL--------CKAVEGVKSFVELNYCVSLLSV------HPSLL-----PQ 398
Q L + VEG+ + + +L+ HP+L PQ
Sbjct: 684 AYCPLTGEQASLYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQ 743
Query: 399 QFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLIMEQL 456
E +KT+ L+ L+E NE L+F+QYI ++ L
Sbjct: 744 NVVER-----------------SMKTKTLMELIENIKDQNESCLIFTQYIGMGNMLKRVL 786
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
+F GQ VL+++G K R I + + I + S KA G+NL A+ V
Sbjct: 787 EEQF----GQRVLFLNGSVPKKNRDKMIEEFQNGTYD--IFILSLKAGGTGLNLTAANHV 840
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
+ D WNP VE QA RAYR+GQKR VHV+ LIT+ TLE
Sbjct: 841 IHYDRWWNPAVENQATDRAYRIGQKRFVHVHKLITTGTLE 880
>gi|423376962|ref|ZP_17354246.1| hypothetical protein IC9_00315 [Bacillus cereus BAG1O-2]
gi|401640056|gb|EJS57789.1| hypothetical protein IC9_00315 [Bacillus cereus BAG1O-2]
Length = 918
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 130/515 (25%), Positives = 224/515 (43%), Gaps = 97/515 (18%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
VP + + P+Q+ G E++ + L +L G G +++ G GK+ T+
Sbjct: 443 VPTSLNATLRPYQQHGIEWL-------LYLRQL--------GFGALLADDMGLGKSIQTI 487
Query: 122 VFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+L + + P +I+AP S+L W++EF+++ P L + + G+
Sbjct: 488 SYLLYVKENKLKTGPALIVAPTSVLGNWQKEFERFA----------PNLRVQLHYGS--- 534
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
NR +G ++ ++ SY L + + +EL+ + D + DE
Sbjct: 535 --NRDKGDSFKDFLQ---------SADVVLTSYALAQ--LDEEELTSLCWDA---VILDE 578
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKS 299
+N T KA+ ++ +I L+GTP +N EL + + + G + + R+
Sbjct: 579 AQNIKNPHTKQSKAVRNLQANHKIALTGTPMENRLAELWSIFDFINHGYLGSLGQFQRRF 638
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV--NVHKGTVLQESLPGLRHSV 357
I K RD+ K+++++ I+PF+ K + +LP +
Sbjct: 639 VTPIEK---------------DRDERKIQQVQRFISPFLLRRTKKDQTVALNLPDKQEQK 683
Query: 358 VILQPDEFQKRL--------CKAVEGVKSFVELNYCVSLLSV------HPSLLPQQFFES 403
Q L + VEG+ + + +L+ HP+L ++ E
Sbjct: 684 AYCPLTGEQASLYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKE-TEP 742
Query: 404 FDVDSAKLARLKLDPEAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLIMEQLRHRFN 461
D+ E +KT+ ++ L+E NE L+F+QYI ++ L F
Sbjct: 743 KDI-----------VERSMKTKTVMELIENIKDQNESCLIFTQYISMGNMLKSILEETF- 790
Query: 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDV 521
GQ VL+++G K+R I + + I + S KA G+NL A+ V+ D
Sbjct: 791 ---GQRVLFLNGSVPKKERDKMIEQFQNGTYD--IFILSLKAGGTGLNLTAANHVIHYDR 845
Query: 522 VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
WNP VE QA RAYR+GQKR VHV+ LIT+ TLE
Sbjct: 846 WWNPAVENQATDRAYRIGQKRFVHVHKLITTGTLE 880
>gi|427798209|gb|JAA64556.1| Putative chromatin remodeling complex wstf-iswi small subunit,
partial [Rhipicephalus pulchellus]
Length = 1386
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 146/555 (26%), Positives = 234/555 (42%), Gaps = 87/555 (15%)
Query: 69 KMFPHQREG---FEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQ 125
++ P+Q EG F W N I DE+ G GKT T+VFL
Sbjct: 174 ELHPYQLEGVNWLRFSWANHTDTILADEM------------------GLGKTIQTIVFLY 215
Query: 126 AYMKL-HPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD-- 182
+ K H R ++ AP S ++ WE EF+ W D FY + + K++ + +
Sbjct: 216 SLFKEGHCRGPFLVSAPLSTIINWEREFEVWAPD--FYVVTY--IGDKDSRAVIREHEFS 271
Query: 183 -NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LF 236
+ K R R K + K F L++ EL I + G +
Sbjct: 272 FDEKAVRNPNKACRMKKDSAVK------------FHVLLTSYELVCIDATILGSVDWQVL 319
Query: 237 VFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTV 296
V DE H +N+ + FK L+ K +++L+GTP QNN +EL + L+ + + L+
Sbjct: 320 VVDEAHRLKNNQSKFFKVLNNYKINYKLLLTGTPLQNNLEELFHLLNFLSPQNFNDLQGF 379
Query: 297 RKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHS 356
+++K + + + C L+ LK +V KG +P
Sbjct: 380 LNEFADLAKEEQVKKLHDLLGC------HLLRRLK------ADVLKG------MPSKSEF 421
Query: 357 VVILQPDEFQKRLCKAVEGVKSFVELN-----YCVSLLSV---------HPSLLPQQFFE 402
++ + QK+ K + +++ LN + VSLL++ HP L P E
Sbjct: 422 IIRVDLTPLQKKYYKYI-LTRNYEALNAKGGSHSVSLLNIMMDLKKCCNHPYLFPAASQE 480
Query: 403 SFDVDSAKLARLKLDPEAGIKTRFLLILLEL-STNEKVLVFSQYIEPLTLIMEQLRHRFN 461
+ + + L G +L L T +VL+FSQ + L IME F
Sbjct: 481 APRMPNGAYEGTALTKACGKLILLHKMLRHLKETGHRVLIFSQMTKMLD-IMED----FL 535
Query: 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDV 521
EG + +DG +RQ +I+ N P + L ST+A GINL A V++ D
Sbjct: 536 EAEGYKYERIDGGITGSQRQEAIDRFNAPGAPQFCFLLSTRAGGLGINLATADTVIIYDS 595
Query: 522 VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGG 581
WNP + QA SRA+R+GQ V +Y +T ++E + +K+ +++V G G
Sbjct: 596 DWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKKKMMLTHLVV--RPGMG 653
Query: 582 NDQTTASEPLEDKIL 596
+ T S+ D IL
Sbjct: 654 SRSNTMSKQELDDIL 668
>gi|407707714|ref|YP_006831299.1| spore coat protein GerQ [Bacillus thuringiensis MC28]
gi|407385399|gb|AFU15900.1| SWF/SNF family helicase [Bacillus thuringiensis MC28]
Length = 918
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 130/515 (25%), Positives = 225/515 (43%), Gaps = 97/515 (18%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
VP + + P+Q+ G E++ + L +L G G +++ G GK+ T+
Sbjct: 443 VPTSLNATLRPYQQHGIEWL-------LYLRQL--------GFGALLADDMGLGKSIQTI 487
Query: 122 VFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+L + + P +I+AP S+L W++EF+++ P L + + G+
Sbjct: 488 SYLLYVKENKLKTGPALIVAPTSVLGNWQKEFERFA----------PNLRVQLHYGS--- 534
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
NR +G ++ ++ SY L + + +EL+ + D + DE
Sbjct: 535 --NRDKGDSFKDFLQ---------SADVVLTSYALAQ--LDEEELTSLCWDA---VILDE 578
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKS 299
+N T KA+ ++ +I L+GTP +N EL + + + G + + R+
Sbjct: 579 AQNIKNPHTKQSKAVRNLQANHKIALTGTPMENRLAELWSIFDFINHGYLGSLGQFQRRF 638
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV--NVHKGTVLQESLPGLRHSV 357
I K RD+ K+++++ I+PF+ K + +LP +
Sbjct: 639 VTPIEK---------------DRDERKIQQVQRFISPFLLRRTKKDQTVALNLPDKQEQK 683
Query: 358 VILQPDEFQKRL--------CKAVEGVKSFVELNYCVSLLSV------HPSLLPQQFFES 403
Q L + VEG+ + + +L+ HP+L ++ E
Sbjct: 684 AYCPLTGEQASLYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKE-TEP 742
Query: 404 FDVDSAKLARLKLDPEAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLIMEQLRHRFN 461
D+ E +KT+ ++ L+E + NE L+F+QYI ++ L F
Sbjct: 743 KDI-----------VERSMKTKTVMELIENIKNQNESCLIFTQYIRMGNMLKSILEETF- 790
Query: 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDV 521
GQ VL+++G K+R I + + I + S KA G+NL A+ V+ D
Sbjct: 791 ---GQRVLFLNGSVPKKERDKMIEQFQNGTYD--IFILSLKAGGTGLNLTAANHVIHYDR 845
Query: 522 VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
WNP VE QA RAYR+GQKR VHV+ LIT+ TLE
Sbjct: 846 WWNPAVENQATDRAYRIGQKRFVHVHKLITTGTLE 880
>gi|119487132|ref|XP_001262421.1| DNA repair protein Rhp26/Rad26, putative [Neosartorya fischeri NRRL
181]
gi|119410578|gb|EAW20524.1| DNA repair protein Rhp26/Rad26, putative [Neosartorya fischeri NRRL
181]
Length = 1214
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 141/548 (25%), Positives = 240/548 (43%), Gaps = 85/548 (15%)
Query: 62 VPRDVRKKMFPHQREGFEFIW---KNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
+P D+ +F +Q+ G +++W + GGI DE+ G GKT
Sbjct: 412 LPGDLNPYLFDYQKTGVQWLWELYQQKVGGIIGDEM------------------GLGKTI 453
Query: 119 LTLVFLQAYMKLHPRCRPVIIA-PRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGA 177
T+ FL PVI+ P +++ W EF +W P + ++ SG +G
Sbjct: 454 QTIAFLAGLHYSKKLDGPVIVVCPATVMKQWVNEFHRW---WPPFRVSILHTSG---SGM 507
Query: 178 VALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV----------SGDELSG 227
V + R + L+ S + T + ++ +++V SG +
Sbjct: 508 VNIRSESSR---EDALLAQTYSSSSRGFTSNQKAARKVVKRVVEEGHVLVTTYSGLQTYS 564
Query: 228 ILLDLP---GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
L +P G + DEGH RN +T + ++T RIILSGTP QNN EL +
Sbjct: 565 HFL-IPVEWGCAILDEGHKIRNPNTSITIHCKELRTPHRIILSGTPMQNNLTELWSLFDF 623
Query: 285 V-RQEFGEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPFVN 339
V G ++ + I + +A+ + + +CA + LK+ I+P++
Sbjct: 624 VFPMRLGTLVNFRNQFEFPIRQGGYANASNLQVQTAAKCA--------ETLKDAISPYLL 675
Query: 340 VHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV---EGVKSFV----ELNYCVSLLSV- 391
+ LP V+ + + Q+ ++ E ++S + ++ Y V +L
Sbjct: 676 QRFKIDVAADLPKKTEQVLFCKLTKPQRMAYESFLKSEEMESILKGRRQILYGVDILRKI 735
Query: 392 --HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPL 449
HP L ++ + S +L + ++ L+ L T K L+F+Q+ L
Sbjct: 736 CNHPDL------QNHKLQSHQLGYGNANKSGKMQVVKSLLELWRDTGHKTLLFAQHRIML 789
Query: 450 TLIMEQLRH--RFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCE 506
++ + +R FN R MDG ++ RQ+ ++ N DP+ + L +TK
Sbjct: 790 DILEKFVRSLSGFNHRR------MDGTTPIQNRQTMVDEFNNDPN--IHVFLLTTKVGGL 841
Query: 507 GINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
G+NL GA RV++ D WNP + QA RA+RLGQKR V VY L+T+ T+E RQ K
Sbjct: 842 GVNLTGADRVIIYDPDWNPSTDVQARERAWRLGQKRDVSVYRLMTAGTIEEKIYHRQIFK 901
Query: 567 VWWSNMVF 574
+ +N +
Sbjct: 902 QFLTNKIL 909
>gi|5917755|gb|AAD56023.1|AF181826_1 chromodomain helicase DNA binding protein 1 [Gallus gallus]
Length = 981
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 137/533 (25%), Positives = 222/533 (41%), Gaps = 100/533 (18%)
Query: 87 GGIDLDELKNSTSTG---------GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP- 136
GG D EL++ G GN CI++ G GKT T+ FL H P
Sbjct: 159 GGRDCLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHELYGPF 218
Query: 137 VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRY 196
+++ P S L +W+ E + W P++ N V L D R
Sbjct: 219 LLVVPLSTLTSWQREIQTWA----------PQM-----NAVVYLGDITSRN--------M 255
Query: 197 VKLYSW------KMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFV-FDEGHTPRNDDT 249
++ + W ++ IL +Y + K S L L +F+ DE H +NDD+
Sbjct: 256 IRTHEWMHPQTKRLKFNILLTTYEILLKDKS------FLGGLNRVFIGIDEAHRLKNDDS 309
Query: 250 CMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FG--EVLRTVRKSGREISKA 306
++K L K+ R++++GTP QN+ +EL + L + E F E GRE A
Sbjct: 310 LLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGREFGYA 369
Query: 307 KHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPG-----LRHSVVILQ 361
L +++ PF+ +++S P LR + LQ
Sbjct: 370 ----------------------SLHKELEPFLLRRVKKDVEKSSPAKVEQILRMEMSALQ 407
Query: 362 PDEFQ-------KRLCKAVEGVKS-----FVELNYCVSLLSVHPSLLPQQFFESFDVDSA 409
++ K L K +G S +EL C + H L+ F
Sbjct: 408 KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCN----HCYLIKPPDDNEFYNKQE 463
Query: 410 KLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEV 468
L L + + L++ +VL+FSQ + L ++ E L++R F ++
Sbjct: 464 ALQHL-IRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQR---- 518
Query: 469 LYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVE 528
+DG + R+ +++ N S+ L ST+A GINL A VV+ D WNP +
Sbjct: 519 --LDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQND 576
Query: 529 RQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGG 581
QA +RA+R+G K+ V++Y L+T ++E D L R +K+ ++V D G
Sbjct: 577 LQAQARAHRIGPKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTG 629
>gi|453082990|gb|EMF11036.1| SNF2_N-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 1270
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 144/550 (26%), Positives = 230/550 (41%), Gaps = 90/550 (16%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
VP DV +F +Q+ G +++W+ + + G I+ G GKT +
Sbjct: 455 VPGDVYPSLFDYQKTGVQWLWELYSQQV---------------GGIVGDEMGLGKTCQVI 499
Query: 122 VFLQAYMKLHPRCRPVII-APRSMLLTWEEEFKKWGIDIPFYNLNKP-----ELSGKENN 175
FL +P+I+ P ++L W +EF +W + L+ ++ +
Sbjct: 500 SFLAGLHYSGKITKPIIVLCPATLLKQWVDEFHRWWPPLRVTILHSSGSGMLDVKREARF 559
Query: 176 GAVALMDNRKRGRGKVG-----LIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILL 230
D RK+ RG+ +I V + T GL + D+L +
Sbjct: 560 EDDLDDDRRKKSRGRPNPSVRNVIDRVVQDGHVLVTTYAGL-------VNYADQLLPVNW 612
Query: 231 DLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-RQEF 289
+ V DEGH RN + + I T R+ILSGTP QNN +EL V
Sbjct: 613 EY---CVLDEGHKIRNPNAEITIFCKEIMTHNRVILSGTPMQNNLEELWTLFDFVFPMRL 669
Query: 290 GEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTV 345
G ++ + I + +A+ + + +CA + LK+ I+P++
Sbjct: 670 GTLVNFKNQFAIPIKQGGYANASNLQVETAMKCA--------ETLKDAISPYLLQRFKAD 721
Query: 346 LQESLPGLRHSVVI-----LQPDEFQKRLCKAVEGVKSFV----ELNYCVSLLSV---HP 393
+ LP V+ LQ D +Q L E +KS + + Y + +L HP
Sbjct: 722 VATDLPKKIERVLFCKLTKLQRDAYQWFLDS--EDMKSIMNGKRQALYGIDILRKICNHP 779
Query: 394 SLLPQQFFESFDVDSAKLARLKLDPEAGIKTRF--LLILLEL-----STNEKVLVFSQYI 446
L+ + K E GI T+ + ++ EL K L+F+Q+
Sbjct: 780 DLVEHKTLSK-----------KAGYEYGIGTKSGKMQVVKELLKIWKDKGHKTLLFAQH- 827
Query: 447 EPLTLIMEQLRHRF-NWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKAC 504
IM + RF G MDG D+K RQ +N N DP + L +TK
Sbjct: 828 ----RIMLDILERFIGSMSGINYRRMDGTTDIKHRQDLVNEFNHDPD--LHVFLLTTKVG 881
Query: 505 CEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQA 564
G+NL GA+R+++ D WNP + QA RA+RLGQKR V +Y L+T+ T+E RQ
Sbjct: 882 GLGVNLTGANRIIIYDPDWNPSTDVQARERAWRLGQKREVEIYRLMTAGTIEEKIYHRQL 941
Query: 565 RKVWWSNMVF 574
K++ +N +
Sbjct: 942 FKLFLTNKIL 951
>gi|423440064|ref|ZP_17416970.1| hypothetical protein IEA_00394 [Bacillus cereus BAG4X2-1]
gi|423463139|ref|ZP_17439907.1| hypothetical protein IEK_00326 [Bacillus cereus BAG6O-1]
gi|423532490|ref|ZP_17508908.1| hypothetical protein IGI_00322 [Bacillus cereus HuB2-9]
gi|423542246|ref|ZP_17518636.1| hypothetical protein IGK_04337 [Bacillus cereus HuB4-10]
gi|423548477|ref|ZP_17524835.1| hypothetical protein IGO_04912 [Bacillus cereus HuB5-5]
gi|401168848|gb|EJQ76100.1| hypothetical protein IGK_04337 [Bacillus cereus HuB4-10]
gi|401175614|gb|EJQ82815.1| hypothetical protein IGO_04912 [Bacillus cereus HuB5-5]
gi|402420973|gb|EJV53242.1| hypothetical protein IEA_00394 [Bacillus cereus BAG4X2-1]
gi|402422470|gb|EJV54708.1| hypothetical protein IEK_00326 [Bacillus cereus BAG6O-1]
gi|402465059|gb|EJV96746.1| hypothetical protein IGI_00322 [Bacillus cereus HuB2-9]
Length = 918
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 130/515 (25%), Positives = 224/515 (43%), Gaps = 97/515 (18%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
VP + + P+Q+ G E++ + L +L G G +++ G GK+ T+
Sbjct: 443 VPTSLNATLRPYQQHGIEWL-------LYLRQL--------GFGALLADDMGLGKSIQTI 487
Query: 122 VFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+L + + P +I+AP S+L W++EF+++ P L + + G+
Sbjct: 488 SYLLYVKENKLKTGPALIVAPTSVLGNWQKEFERFA----------PNLRVQLHYGS--- 534
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
NR +G ++ ++ SY L + + +EL+ + D + DE
Sbjct: 535 --NRDKGDSFKDFLQ---------SADVVLTSYALAQ--LDEEELTSLCWDA---VILDE 578
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKS 299
+N T KA+ ++ +I L+GTP +N EL + + + G + + R+
Sbjct: 579 AQNIKNPHTKQSKAVRNLQANHKIALTGTPMENRLAELWSIFDFINHGYLGSLGQFQRRF 638
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV--NVHKGTVLQESLPGLRHSV 357
I K RD+ K+++++ I+PF+ K + +LP +
Sbjct: 639 VTPIEK---------------DRDERKIQQVQRFISPFLLRRTKKDQTVALNLPDKQEQK 683
Query: 358 VILQPDEFQKRL--------CKAVEGVKSFVELNYCVSLLSV------HPSLLPQQFFES 403
Q L + VEG+ + + +L+ HP+L ++ E
Sbjct: 684 AYCPLTGEQASLYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKE-TEP 742
Query: 404 FDVDSAKLARLKLDPEAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLIMEQLRHRFN 461
D+ E +KT+ ++ L+E NE L+F+QYI ++ L F
Sbjct: 743 KDI-----------VERSMKTKTVMELIENIKDQNESCLIFTQYISMGNMLKSILEETF- 790
Query: 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDV 521
GQ VL+++G K+R I + + I + S KA G+NL A+ V+ D
Sbjct: 791 ---GQRVLFLNGSVPKKERDKMIEQFQNGTYD--IFILSLKAGGTGLNLTAANHVIHYDR 845
Query: 522 VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
WNP VE QA RAYR+GQKR VHV+ LIT+ TLE
Sbjct: 846 WWNPAVENQATDRAYRIGQKRFVHVHKLITTGTLE 880
>gi|303317828|ref|XP_003068916.1| SNF2 family N-terminal domain containing protein [Coccidioides
posadasii C735 delta SOWgp]
gi|240108597|gb|EER26771.1| SNF2 family N-terminal domain containing protein [Coccidioides
posadasii C735 delta SOWgp]
Length = 961
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 141/551 (25%), Positives = 233/551 (42%), Gaps = 104/551 (18%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + HQREG +F+++ + G + G G I++ G GKT T+ L
Sbjct: 305 KHLREHQREGVKFLYECVMGMRPFN----------GEGAILADEMGLGKTLQTIALLWTL 354
Query: 128 MKLHP--RCRPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
MK +P PV I+ P +++ W++EF+KW
Sbjct: 355 MKQNPIYGASPVVKKALIVCPVTLIKNWQKEFRKW------------------------- 389
Query: 181 MDNRKRGRGKVGLI----RYVKLYSWKMGTGILGLSYRL----FEKLVSGDE--LSGILL 230
G ++G+ ++++L + MG +SY + +E+L + E G +
Sbjct: 390 -----LGNDRLGVFVADGKHMRLTDFTMG-----MSYNVMIIGYERLRTVQEELAKGRGI 439
Query: 231 DLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFG 290
D+ + DEGH + +A+ + T RRIILSGTP QN+ E + V
Sbjct: 440 DI---VIADEGHRLKTVQNKSAQAIQSLNTARRIILSGTPIQNDLSEFFAMVDFVNPGL- 495
Query: 291 EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIA----PFVNVHKGTVL 346
L T + +E ++ S A+ +D EK + E++A F+ +L
Sbjct: 496 --LGTFKMFMKEF----EGPIVKSRQPGASKKDIEKGEARSEELAGLTSKFILRRTADIL 549
Query: 347 QESLPGLRHSVVILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSVHPSLL 396
+ LP ++ P Q + + A+ +S ++L + L PSLL
Sbjct: 550 SKHLPPKTEYILFCNPTPAQANIYRHVIASPIFQSALGNSESALQLITILKKLCNSPSLL 609
Query: 397 PQQFFESFDVD---SAKLARL------KLDPEAGIKTRFLLILLE---LSTNEKVLVFSQ 444
+ + + + S+ ++ L P + K R L LL +T+EK+++ S
Sbjct: 610 TLKVLKDENPNCTISSLISTLPPNLLRHFSPASSGKIRVLDQLLHNLHSTTSEKIVLVSN 669
Query: 445 YIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI-MLASTKA 503
Y L L +DG KRQ ++ N SS++ L S KA
Sbjct: 670 YTS-----TLNLLAALLSSLSLPYLRLDGSTPASKRQFLVDDFNRSSSKSCFAFLLSAKA 724
Query: 504 CCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQ 563
G+NL GASR+VL DV WNP + QA++R +R GQKR H+Y ++ LE +RQ
Sbjct: 725 GGIGLNLTGASRLVLFDVDWNPATDIQAMARIHRDGQKRHCHIYRMLLRGGLEEKIWQRQ 784
Query: 564 ARKVWWSNMVF 574
K+ ++ V
Sbjct: 785 VTKLGLADSVM 795
>gi|2660669|gb|AAC79140.1| human Mi-2 autoantigen-like protein [Arabidopsis thaliana]
gi|9758384|dbj|BAB08833.1| helicase-like protein [Arabidopsis thaliana]
Length = 2228
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 140/551 (25%), Positives = 238/551 (43%), Gaps = 83/551 (15%)
Query: 52 THAQGTVWELV--PRDVRK-KMFPHQREGFEFI---WKNIAGGIDLDELKNSTSTGGGNG 105
T +G V L P+++R +F HQ E ++ W I DE+
Sbjct: 654 TRERGEVVTLTEQPQELRGGALFAHQLEALNWLRRCWHKSKNVILADEM----------- 702
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNL 164
G GKT FL + RP +++ P S + W EF W P N+
Sbjct: 703 -------GLGKTVSASAFLSSLYFEFGVARPCLVLVPLSTMPNWLSEFSLWA---PLLNV 752
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
+ S K G + D + G + Y + +L +Y + L
Sbjct: 753 VEYHGSAK---GRAIIRDYEWHAKNSTGTTKKPTSYKF----NVLLTTYEMV--LADSSH 803
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
L G+ ++ V DEGH +N ++ +F L+ + R++L+GTP QNN E+ N L+
Sbjct: 804 LRGVPWEV---LVVDEGHRLKNSESKLFSLLNTFSFQHRVLLTGTPLQNNIGEMYNLLNF 860
Query: 285 VRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP-FVNVHKG 343
++ L + + +++ A EK++ELK+ +AP + K
Sbjct: 861 LQPSSFPSLSSFEERFHDLTSA------------------EKVEELKKLVAPHMLRRLKK 902
Query: 344 TVLQESLPGLRHSVVI----LQPDEFQKRLCKAVE-------GVKSFVELNYCVSLLSV- 391
+Q P V + +Q + ++ L K + GV LN + L V
Sbjct: 903 DAMQNIPPKTERMVPVELTSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVC 962
Query: 392 -HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNE--KVLVFSQYIEP 448
HP L+P ES ++ R+K A K L +L++ E +VL+FSQ +
Sbjct: 963 NHPYLIPGTEPESGSLEFLHDMRIK----ASAKLTLLHSMLKVLHKEGHRVLIFSQMTKL 1018
Query: 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGI 508
L ++ + L F + + V DG V RQ++I N ++ + L ST+AC GI
Sbjct: 1019 LDILEDYLNIEFGPKTFERV---DGSVAVADRQAAIARFNQDKNRF-VFLLSTRACGLGI 1074
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NL A V++ D +NP + QA++RA+R+GQ + + VY L+ ++E +++ + A+K
Sbjct: 1075 NLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVE-ERILQLAKKKL 1133
Query: 569 WSNMVFPSSDG 579
+ +F + G
Sbjct: 1134 MLDQLFVNKSG 1144
>gi|423449775|ref|ZP_17426654.1| hypothetical protein IEC_04383 [Bacillus cereus BAG5O-1]
gi|423621720|ref|ZP_17597498.1| hypothetical protein IK3_00318 [Bacillus cereus VD148]
gi|401127646|gb|EJQ35360.1| hypothetical protein IEC_04383 [Bacillus cereus BAG5O-1]
gi|401263018|gb|EJR69152.1| hypothetical protein IK3_00318 [Bacillus cereus VD148]
Length = 918
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 130/515 (25%), Positives = 224/515 (43%), Gaps = 97/515 (18%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
VP + + P+Q+ G E++ + L +L G G +++ G GK+ T+
Sbjct: 443 VPTSLNATLRPYQQHGIEWL-------LYLRQL--------GFGALLADDMGLGKSIQTI 487
Query: 122 VFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+L + + P +I+AP S+L W++EF+++ P L + + G+
Sbjct: 488 SYLLYVKENKLKTGPALIVAPTSVLGNWQKEFERFA----------PNLRVQLHYGS--- 534
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
NR +G ++ ++ SY L + + +EL+ + D + DE
Sbjct: 535 --NRDKGDSFKDFLQ---------SADVVLTSYALAQ--LDEEELTSLCWDA---VILDE 578
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKS 299
+N T KA+ ++ +I L+GTP +N EL + + + G + + R+
Sbjct: 579 AQNIKNPHTKQSKAVRNLQANHKIALTGTPMENRLAELWSIFDFINHGYLGSLGQFQRRF 638
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV--NVHKGTVLQESLPGLRHSV 357
I K RD+ K+++++ I+PF+ K + +LP +
Sbjct: 639 VTPIEK---------------DRDERKIQQVQRFISPFLLRRTKKDQTVALNLPDKQEQK 683
Query: 358 VILQPDEFQKRL--------CKAVEGVKSFVELNYCVSLLSV------HPSLLPQQFFES 403
Q L + VEG+ + + +L+ HP+L ++ E
Sbjct: 684 AYCPLTGEQASLYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKE-TEP 742
Query: 404 FDVDSAKLARLKLDPEAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLIMEQLRHRFN 461
D+ E +KT+ ++ L+E NE L+F+QYI ++ L F
Sbjct: 743 KDI-----------VERSMKTKTVMELIENIKDQNESCLIFTQYISMGNMLKSILEETF- 790
Query: 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDV 521
GQ VL+++G K+R I + + I + S KA G+NL A+ V+ D
Sbjct: 791 ---GQRVLFLNGSVPKKERDKMIEQFQNGTYD--IFILSLKAGGTGLNLTAANHVIHYDR 845
Query: 522 VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
WNP VE QA RAYR+GQKR VHV+ LIT+ TLE
Sbjct: 846 WWNPAVENQATDRAYRIGQKRFVHVHKLITTGTLE 880
>gi|392575753|gb|EIW68885.1| hypothetical protein TREMEDRAFT_31047, partial [Tremella
mesenterica DSM 1558]
Length = 684
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 136/514 (26%), Positives = 222/514 (43%), Gaps = 73/514 (14%)
Query: 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW--GIDIPFY 162
GCI++ G GKT + F+ A + + +I P S L W EF+++ GID+ Y
Sbjct: 152 GCILADEMGLGKTIQVIAFIAALKEKGVKGPHMIFVPASTLENWIREFERFAPGIDVQPY 211
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222
++ E +G L D+ KR + + G + V L S+ L++ F K V
Sbjct: 212 YGSQAERAG--------LRDDLKR-QYRAGKLEVV-LASYTQVAAPDDLAF--FRKKVEF 259
Query: 223 DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
D + V+DEGH +N T + L I+ R R++L+GTP QNN QEL + L
Sbjct: 260 D-----------MCVYDEGHKLKNCTTKAYNDLMSIQPRWRLLLTGTPLQNNLQELVSLL 308
Query: 283 SLVRQE----------------FGEVLRTVRKSGREISKAKHASLISSIGRCAN--HRDD 324
+ ++ + E ++ RK+ E+ + + AN H+ D
Sbjct: 309 MFIHRDTFTVEHCDMSPVQAKIYRETMKRSRKALEELDDDALEAAAADDEAEANKHHQVD 368
Query: 325 EKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI--LQPDEFQKRLCKAVEGVKSFVEL 382
K + ++ +L + H ++ L D +++ KA G + +
Sbjct: 369 SKKAKDAKEKQKSKESSSSNILMDLRKAASHPLLFRRLYTDAKIRQIAKACLGTPRWCDS 428
Query: 383 NY---CVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKV 439
NY L + L + F +D K+A L+ E K +++
Sbjct: 429 NYDYVVEDLEELQRFALKTEVF----LDGGKVAALQKHVERCKKE-----------GKRM 473
Query: 440 LVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
L+FSQ++ L ++ L H G + +DG +RQ ++ ND + + L
Sbjct: 474 LLFSQFVMILDVLEVALEHL-----GVKYTRLDGSTKTDERQGLVDEFND-DPEITVFLL 527
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
STKA GINL AS V++ D +NP +RQA RAYR+GQ++ V V LIT ++++ D
Sbjct: 528 STKAGGVGINLTAASVVIIYDQDFNPHNDRQAADRAYRIGQEKEVEVIKLITKDSIDEDM 587
Query: 560 LRRQARKVWWSNMV----FPSSDGGGNDQTTASE 589
L K+ + V G D TA E
Sbjct: 588 LLIGQTKLQLDDAVGGEELTIDPGANQDDKTAKE 621
>gi|34533780|dbj|BAC86802.1| unnamed protein product [Homo sapiens]
Length = 1225
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 135/497 (27%), Positives = 222/497 (44%), Gaps = 79/497 (15%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 700 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 744
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 745 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 803
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 804 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 853
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 854 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 913
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 914 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 955
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 956 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVA-----AVEAPVL 1009
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 1010 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1064
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1065 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1124
Query: 526 FVERQAISRAYRLGQKR 542
+ QA SRA+R+GQ +
Sbjct: 1125 HNDIQAFSRAHRIGQTK 1141
>gi|402563156|ref|YP_006605880.1| helicase [Bacillus thuringiensis HD-771]
gi|401791808|gb|AFQ17847.1| helicase [Bacillus thuringiensis HD-771]
Length = 918
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 131/520 (25%), Positives = 223/520 (42%), Gaps = 107/520 (20%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
VP + + P+Q+ G E++ + L +L G G +++ G GK+ T+
Sbjct: 443 VPTSLNATLRPYQQHGIEWL-------LYLRKL--------GFGALLADDMGLGKSIQTI 487
Query: 122 VFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+L + + + P +I+AP S+L W++EF+++ P L + + G+
Sbjct: 488 SYLLYIKENNLKTGPALIVAPTSVLGNWQKEFERFA----------PNLCVQLHYGS--- 534
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
NR++G ++ ++ SY L + + +EL+ + D + DE
Sbjct: 535 --NREKGNSFEDFLQ---------SADVVLTSYALAQ--LDEEELTSLCWDA---VILDE 578
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKS 299
+N T KA+ ++ +I L+GTP +N EL + + + G + + R+
Sbjct: 579 AQNIKNPHTKQSKAVRNLQANHKIALTGTPMENRLAELWSIFDFINHGYLGSLGQFQRRF 638
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV--NVHKGTVLQESLPGLRHSV 357
I K RD+ K+++++ I+PF+ K + +LP +
Sbjct: 639 VTPIEK---------------DRDEGKIQQVQRFISPFLLRRTKKDQTVALNLPDKQEQK 683
Query: 358 VILQPDEFQKRL--------CKAVEGVKSFVELNYCVSLLSV------HPSLL-----PQ 398
Q L + VEG+ + + +L+ HP+L PQ
Sbjct: 684 AYCPLTGEQASLYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQ 743
Query: 399 QFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLIMEQL 456
E +KT+ L+ L+E NE L+F+QYI ++ L
Sbjct: 744 NVVER-----------------SMKTKTLMELIENIKDQNESCLIFTQYIGMGNMLKRVL 786
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
+F GQ VL+++G K R I + + I + S KA G+NL A+ V
Sbjct: 787 EEQF----GQRVLFLNGSVPKKDRDKMIEEFQNGTYD--IFILSLKAGGTGLNLTAANHV 840
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
+ D WNP VE QA RAYR+GQKR VHV+ LIT+ TLE
Sbjct: 841 IHYDRWWNPAVENQATDRAYRIGQKRFVHVHKLITTGTLE 880
>gi|423362911|ref|ZP_17340411.1| hypothetical protein IC1_04888 [Bacillus cereus VD022]
gi|401076662|gb|EJP85013.1| hypothetical protein IC1_04888 [Bacillus cereus VD022]
Length = 918
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 131/520 (25%), Positives = 223/520 (42%), Gaps = 107/520 (20%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
VP + + P+Q+ G E++ + L +L G G +++ G GK+ T+
Sbjct: 443 VPTSLNATLRPYQQHGIEWL-------LYLRKL--------GFGALLADDMGLGKSIQTI 487
Query: 122 VFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+L + + + P +I+AP S+L W++EF+++ P L + + G+
Sbjct: 488 SYLLYIKENNLKTGPALIVAPTSVLGNWQKEFERFA----------PNLCVQLHYGS--- 534
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
NR++G ++ ++ SY L + + +EL+ + D + DE
Sbjct: 535 --NREKGNSFEDFLQ---------SADVVLTSYALAQ--LDEEELTSLCWDA---VILDE 578
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKS 299
+N T KA+ ++ +I L+GTP +N EL + + + G + + R+
Sbjct: 579 AQNIKNPHTKQSKAVRNLQANHKIALTGTPMENRLAELWSIFDFINHGYLGSLGQFQRRF 638
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV--NVHKGTVLQESLPGLRHSV 357
I K RD+ K+++++ I+PF+ K + +LP +
Sbjct: 639 VTPIEK---------------DRDEGKIQQVQRFISPFLLRRTKKDQTVALNLPDKQEQK 683
Query: 358 VILQPDEFQKRL--------CKAVEGVKSFVELNYCVSLLSV------HPSLL-----PQ 398
Q L + VEG+ + + +L+ HP+L PQ
Sbjct: 684 AYCPLTGEQASLYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQ 743
Query: 399 QFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLIMEQL 456
E +KT+ L+ L+E NE L+F+QYI ++ L
Sbjct: 744 NVVER-----------------SMKTKTLMELIENIKDQNESCLIFTQYIGMGNMLKRVL 786
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
+F GQ VL+++G K R I + + I + S KA G+NL A+ V
Sbjct: 787 EEQF----GQRVLFLNGSVPKKDRDKMIEEFQNGTYD--IFILSLKAGGTGLNLTAANHV 840
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
+ D WNP VE QA RAYR+GQKR VHV+ LIT+ TLE
Sbjct: 841 IHYDRWWNPAVENQATDRAYRIGQKRFVHVHKLITTGTLE 880
>gi|229072708|ref|ZP_04205910.1| Helicase, SNF2/RAD54 [Bacillus cereus F65185]
gi|229181505|ref|ZP_04308833.1| Helicase, SNF2/RAD54 [Bacillus cereus 172560W]
gi|228602080|gb|EEK59573.1| Helicase, SNF2/RAD54 [Bacillus cereus 172560W]
gi|228710684|gb|EEL62657.1| Helicase, SNF2/RAD54 [Bacillus cereus F65185]
Length = 856
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 131/520 (25%), Positives = 222/520 (42%), Gaps = 107/520 (20%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
VP + + P+Q+ G E++ + L +L G G +++ G GK+ T+
Sbjct: 381 VPTSLNATLRPYQQHGIEWL-------LYLRKL--------GFGALLADDMGLGKSIQTI 425
Query: 122 VFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+L + + + P +I+AP S+L W++EF+++ P L + + G+
Sbjct: 426 SYLLYIKENNLKTGPALIVAPTSVLGNWQKEFERFA----------PNLRVQLHYGS--- 472
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
NR +G ++ ++ SY L + + +EL+ + D + DE
Sbjct: 473 --NRDKGNSFEDFLQ---------SADVVLTSYALAQ--LDEEELTSLCWDA---VILDE 516
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKS 299
+N T KA+ ++ +I L+GTP +N EL + + + G + + R+
Sbjct: 517 AQNIKNPHTKQSKAVRNLQANHKIALTGTPMENRLAELWSIFDFINHGYLGSLGQFQRRF 576
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV--NVHKGTVLQESLPGLRHSV 357
I K RD+ K+++++ I+PF+ K + +LP +
Sbjct: 577 VTPIEK---------------DRDEGKIQQVQRFISPFLLRRTKKDQTVALNLPDKQEQK 621
Query: 358 VILQPDEFQKRL--------CKAVEGVKSFVELNYCVSLLSV------HPSLL-----PQ 398
Q L + VEG+ + + +L+ HP+L PQ
Sbjct: 622 AYCPLTGEQASLYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQ 681
Query: 399 QFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLIMEQL 456
E +KT+ L+ L+E NE L+F+QYI ++ L
Sbjct: 682 NVVER-----------------SMKTKTLMELIENIKDQNESCLIFTQYIGMGNMLKRVL 724
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
+F GQ VL+++G K R I + + I + S KA G+NL A+ V
Sbjct: 725 EEKF----GQRVLFLNGSVPKKDRDKMIEEFQNGTYD--IFILSLKAGGTGLNLTAANHV 778
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
+ D WNP VE QA RAYR+GQKR VHV+ LIT+ TLE
Sbjct: 779 IHYDRWWNPAVENQATDRAYRIGQKRFVHVHKLITTGTLE 818
>gi|229193493|ref|ZP_04320440.1| Helicase, SNF2/RAD54 [Bacillus cereus ATCC 10876]
gi|228590025|gb|EEK47897.1| Helicase, SNF2/RAD54 [Bacillus cereus ATCC 10876]
Length = 856
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 131/520 (25%), Positives = 222/520 (42%), Gaps = 107/520 (20%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
VP + + P+Q+ G E++ + L +L G G +++ G GK+ T+
Sbjct: 381 VPTSLNATLRPYQQHGIEWL-------LYLRKL--------GFGALLADDMGLGKSIQTI 425
Query: 122 VFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+L + + + P +I+AP S+L W++EF+++ P L + + G+
Sbjct: 426 SYLLYIKENNLKTGPALIVAPTSVLGNWQKEFERFA----------PNLRVQLHYGS--- 472
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
NR +G ++ ++ SY L + + +EL+ + D + DE
Sbjct: 473 --NRDKGNSFEDFLQ---------SADVVLTSYALAQ--LDEEELTSLCWDA---VILDE 516
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKS 299
+N T KA+ ++ +I L+GTP +N EL + + + G + + R+
Sbjct: 517 AQNIKNPHTKQSKAVRNLQANHKIALTGTPMENRLAELWSIFDFINHGYLGSLGQFQRRF 576
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV--NVHKGTVLQESLPGLRHSV 357
I K RD+ K+++++ I+PF+ K + +LP +
Sbjct: 577 VTPIEK---------------DRDEGKIQQVQRFISPFLLRRTKKDQTVALNLPDKQEQK 621
Query: 358 VILQPDEFQKRL--------CKAVEGVKSFVELNYCVSLLSV------HPSLL-----PQ 398
Q L + VEG+ + + +L+ HP+L PQ
Sbjct: 622 AYCPLTGEQASLYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQ 681
Query: 399 QFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLIMEQL 456
E +KT+ L+ L+E NE L+F+QYI ++ L
Sbjct: 682 NVVER-----------------SMKTKTLMELIENIKDQNESCLIFTQYIGMGNMLKRVL 724
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
+F GQ VL+++G K R I + + I + S KA G+NL A+ V
Sbjct: 725 EEKF----GQRVLFLNGSVPKKDRDKMIEEFQNGTYD--IFILSLKAGGTGLNLTAANHV 778
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
+ D WNP VE QA RAYR+GQKR VHV+ LIT+ TLE
Sbjct: 779 IHYDRWWNPAVENQATDRAYRIGQKRFVHVHKLITTGTLE 818
>gi|218900369|ref|YP_002448780.1| helicase [Bacillus cereus G9842]
gi|218544351|gb|ACK96745.1| putative helicase [Bacillus cereus G9842]
Length = 918
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 131/520 (25%), Positives = 223/520 (42%), Gaps = 107/520 (20%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
VP + + P+Q+ G E++ + L +L G G +++ G GK+ T+
Sbjct: 443 VPTSLNATLRPYQQHGIEWL-------LYLRKL--------GFGALLADDMGLGKSIQTI 487
Query: 122 VFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+L + + + P +I+AP S+L W++EF+++ P L + + G+
Sbjct: 488 SYLLYIKENNLKTGPALIVAPTSVLGNWQKEFERFA----------PNLCVQLHYGS--- 534
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
NR++G ++ ++ SY L + + +EL+ + D + DE
Sbjct: 535 --NREKGNSFEDFLQ---------SADVVLTSYALAQ--LDEEELTSLCWDA---VILDE 578
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKS 299
+N T KA+ ++ +I L+GTP +N EL + + + G + + R+
Sbjct: 579 AQNIKNPHTKQSKAVRNLQANHKIALTGTPMENRLAELWSIFDFINHGYLGSLGQFQRRF 638
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV--NVHKGTVLQESLPGLRHSV 357
I K RD+ K+++++ I+PF+ K + +LP +
Sbjct: 639 VTPIEK---------------DRDEGKIQQVQRFISPFLLRRTKKDQTVALNLPDKQEQK 683
Query: 358 VILQPDEFQKRL--------CKAVEGVKSFVELNYCVSLLSV------HPSLL-----PQ 398
Q L + VEG+ + + +L+ HP+L PQ
Sbjct: 684 AYCPLTGEQASLYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQ 743
Query: 399 QFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLIMEQL 456
E +KT+ L+ L+E NE L+F+QYI ++ L
Sbjct: 744 NVVER-----------------SMKTKTLMELIENIKDQNESCLIFTQYIGMGNMLKRVL 786
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
+F GQ VL+++G K R I + + I + S KA G+NL A+ V
Sbjct: 787 EEQF----GQRVLFLNGSVPKKDRDKMIEEFQNGTYD--IFILSLKAGGTGLNLTAANHV 840
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
+ D WNP VE QA RAYR+GQKR VHV+ LIT+ TLE
Sbjct: 841 IHYDRWWNPAVENQATDRAYRIGQKRFVHVHKLITTGTLE 880
>gi|414886764|tpg|DAA62778.1| TPA: putative homeodomain-like transcription factor superfamily
protein [Zea mays]
Length = 2379
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 135/544 (24%), Positives = 238/544 (43%), Gaps = 103/544 (18%)
Query: 63 PRDVRKKM-FPHQREGFEFI---WKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTG 118
P++++ M FPHQ E ++ W I DE+ G GKT
Sbjct: 839 PKELQGGMLFPHQLEALNWLRKCWYKSKNVILADEM------------------GLGKTV 880
Query: 119 LTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGA 177
FL + Y + +++ P S + W EF W P L+ E +G+
Sbjct: 881 SACAFLSSLYCEFKINLPCLVLVPLSTMPNWMAEFSSWA----------PHLNVVEYHGS 930
Query: 178 VALMDNRKRGRGKVGLIRYVKLYSWKMG----TGILGLSYRLFEKLVSGDELSGILLDLP 233
R R ++ Y W G G SY+ F L++ E+ +L+D
Sbjct: 931 A-------RSRS------IIRQYEWHAGDASQIGKTKRSYK-FNVLLTTYEM--VLVDAA 974
Query: 234 GL-------FVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR 286
L + DEGH +N + +F L+ + R++L+GTP QNN E+ N L+ ++
Sbjct: 975 YLRSVSWEVLIVDEGHRLKNSSSKLFSLLNSFSFQHRVLLTGTPLQNNIGEMYNLLNFLQ 1034
Query: 287 QEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP-FVNVHKGTV 345
L + + +++ A EK++ELK+ +AP + K
Sbjct: 1035 PTSFPSLSSFEEKFNDLTTA------------------EKVEELKKLVAPHMLRRLKKDA 1076
Query: 346 LQESLPGLRHSVVI----LQPDEFQKRLCKAVEGVKSFVELNYCVSLLSV---------H 392
+Q P + V + +Q + ++ L K + +++ + SLL++ H
Sbjct: 1077 MQNIPPKIERMVPVELTSIQAEYYRAMLTKNYQVLRNIGKGGAHQSLLNIVMQLRKVCNH 1136
Query: 393 PSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNE--KVLVFSQYIEPLT 450
P L+P ES + R+K A K L ++L++ E +VL+FSQ + L
Sbjct: 1137 PYLIPGTEPESGSPEFLHEMRIK----ASAKLTLLHLMLKILHKEGHRVLIFSQMTKLLD 1192
Query: 451 LIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINL 510
++ + L F + + V DG V +RQ++I N ++ + L ST++C GINL
Sbjct: 1193 ILEDYLTLEFGPKTFERV---DGSVSVAERQAAIVRFNQDKTRF-VFLLSTRSCGLGINL 1248
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS 570
A V++ D +NP + QA++RA+R+GQ + VY L+ ++E +++ + A+K
Sbjct: 1249 ATADTVIIYDSDFNPHADIQAMNRAHRIGQSNRLLVYRLVVRASVE-ERILQLAKKKLML 1307
Query: 571 NMVF 574
+ +F
Sbjct: 1308 DQLF 1311
>gi|229112656|ref|ZP_04242192.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock1-15]
gi|228670788|gb|EEL26096.1| Helicase, SNF2/RAD54 [Bacillus cereus Rock1-15]
Length = 856
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 132/520 (25%), Positives = 223/520 (42%), Gaps = 107/520 (20%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
VP + + P+Q+ G E++ + L +L G G +++ G GK+ T+
Sbjct: 381 VPTSLNATLRPYQQHGIEWL-------LYLRKL--------GFGALLADDMGLGKSIQTI 425
Query: 122 VFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+L + + + P +I+AP S+L W++EF+++ P L + + G+
Sbjct: 426 SYLLYIKENNLKTGPALIVAPTSVLGNWQKEFERFA----------PNLRVQLHYGS--- 472
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
NR +G ++ ++ SY L + + +EL+ + D + DE
Sbjct: 473 --NRDKGNSFEDFLQ---------SADVVLTSYALAQ--LDEEELTSLCWDA---VILDE 516
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKS 299
+N T KA+ ++ +I L+GTP +N EL + + + G + + R+
Sbjct: 517 AQNIKNPHTKQSKAVRNLQANHKIALTGTPMENRLAELWSIFDFINHGYLGSLGQFQRRF 576
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV--NVHKGTVLQESLPGLRHSV 357
I K RD+ K+++++ I+PF+ K + +LP +
Sbjct: 577 VTPIEK---------------DRDEGKIQQVQRFISPFLLRRTKKDQTVALNLPDKQEQK 621
Query: 358 VILQPDEFQKRL--------CKAVEGVKSFVELNYCVSLLSV------HPSLL-----PQ 398
V Q L + VEG+ + + +L+ HP+L PQ
Sbjct: 622 VYCPLTGEQASLYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQ 681
Query: 399 QFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLIMEQL 456
E +KT+ L+ L+E NE L+F+QYI ++ L
Sbjct: 682 NVVER-----------------SMKTKTLMELIENIKDQNESCLIFTQYIGMGNMLKRVL 724
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
+F GQ VL+++G K R I + + I + S KA G+NL A+ V
Sbjct: 725 EEKF----GQLVLFLNGSVPKKDRDKMIEEFQNGTYD--IFILSLKAGGTGLNLTAANHV 778
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
+ D WNP VE QA RAYR+GQKR VHV+ LIT+ TLE
Sbjct: 779 IHYDRWWNPAVENQATDRAYRIGQKRFVHVHKLITTGTLE 818
>gi|228903720|ref|ZP_04067840.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis IBL 4222]
gi|228855988|gb|EEN00528.1| Helicase, SNF2/RAD54 [Bacillus thuringiensis IBL 4222]
Length = 856
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 131/520 (25%), Positives = 223/520 (42%), Gaps = 107/520 (20%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
VP + + P+Q+ G E++ + L +L G G +++ G GK+ T+
Sbjct: 381 VPTSLNATLRPYQQHGIEWL-------LYLRKL--------GFGALLADDMGLGKSIQTI 425
Query: 122 VFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+L + + + P +I+AP S+L W++EF+++ P L + + G+
Sbjct: 426 SYLLYIKENNLKTGPALIVAPTSVLGNWQKEFERFA----------PNLCVQLHYGS--- 472
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
NR++G ++ ++ SY L + + +EL+ + D + DE
Sbjct: 473 --NREKGNSFEDFLQ---------SADVVLTSYALAQ--LDEEELTSLCWDA---VILDE 516
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKS 299
+N T KA+ ++ +I L+GTP +N EL + + + G + + R+
Sbjct: 517 AQNIKNPHTKQSKAVRNLQANHKIALTGTPMENRLAELWSIFDFINHGYLGSLGQFQRRF 576
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV--NVHKGTVLQESLPGLRHSV 357
I K RD+ K+++++ I+PF+ K + +LP +
Sbjct: 577 VTPIEK---------------DRDEGKIQQVQRFISPFLLRRTKKDQTVALNLPDKQEQK 621
Query: 358 VILQPDEFQKRL--------CKAVEGVKSFVELNYCVSLLSV------HPSLL-----PQ 398
Q L + VEG+ + + +L+ HP+L PQ
Sbjct: 622 AYCPLTGEQASLYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQ 681
Query: 399 QFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLIMEQL 456
E +KT+ L+ L+E NE L+F+QYI ++ L
Sbjct: 682 NVVER-----------------SMKTKTLMELIENIKDQNESCLIFTQYIGMGNMLKRVL 724
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
+F GQ VL+++G K R I + + I + S KA G+NL A+ V
Sbjct: 725 EEQF----GQRVLFLNGSVPKKNRDKMIEEFQNGTYD--IFILSLKAGGTGLNLTAANHV 778
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
+ D WNP VE QA RAYR+GQKR VHV+ LIT+ TLE
Sbjct: 779 IHYDRWWNPAVENQATDRAYRIGQKRFVHVHKLITTGTLE 818
>gi|296505669|ref|YP_003667369.1| SWF/SNF family helicase [Bacillus thuringiensis BMB171]
gi|296326721|gb|ADH09649.1| SWF/SNF family helicase [Bacillus thuringiensis BMB171]
Length = 918
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 131/520 (25%), Positives = 222/520 (42%), Gaps = 107/520 (20%)
Query: 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTL 121
VP + + P+Q+ G E++ + L +L G G +++ G GK+ T+
Sbjct: 443 VPNSLNATLRPYQQHGIEWL-------LYLRKL--------GFGALLADDMGLGKSIQTI 487
Query: 122 VFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180
+L + + + P +I+AP S+L W++EF+++ P L + + G+
Sbjct: 488 SYLLYIKENNLKTGPALIVAPTSVLGNWQKEFERFA----------PNLRVQLHYGS--- 534
Query: 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDE 240
NR +G ++ ++ SY L + + +EL+ + D + DE
Sbjct: 535 --NRDKGNSFEDFLQ---------SADVVLTSYALAQ--LDEEELTSLCWDA---VILDE 578
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVRKS 299
+N T KA+ ++ +I L+GTP +N EL + + + G + + R+
Sbjct: 579 AQNIKNPHTKQSKAVRNLQANHKIALTGTPMENRLAELWSIFDFINHGYLGSLGQFQRRF 638
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV--NVHKGTVLQESLPGLRHSV 357
I K RD+ K+++++ I+PF+ K + +LP +
Sbjct: 639 VTPIEK---------------DRDEGKIQQVQRFISPFLLRRTKKDQTVALNLPDKQEQK 683
Query: 358 VILQPDEFQKRL--------CKAVEGVKSFVELNYCVSLLSV------HPSLL-----PQ 398
Q L + VEG+ + + +L+ HP+L PQ
Sbjct: 684 AYCPLTGEQASLYEQLVQDTLQNVEGLSGIERRGFILLMLNKLKQICNHPALYLKEEEPQ 743
Query: 399 QFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE--LSTNEKVLVFSQYIEPLTLIMEQL 456
E +KT+ L+ L+E NE L+F+QYI ++ L
Sbjct: 744 NVVER-----------------SMKTKTLMELIENIKDQNESCLIFTQYIGMGNMLKRVL 786
Query: 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRV 516
+F GQ VL+++G K R I + + I + S KA G+NL A+ V
Sbjct: 787 EEKF----GQRVLFLNGSVPKKDRDKMIEEFQNGTYD--IFILSLKAGGTGLNLTAANHV 840
Query: 517 VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
+ D WNP VE QA RAYR+GQKR VHV+ LIT+ TLE
Sbjct: 841 IHYDRWWNPAVENQATDRAYRIGQKRFVHVHKLITTGTLE 880
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,412,246,938
Number of Sequences: 23463169
Number of extensions: 455542981
Number of successful extensions: 1090520
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 13040
Number of HSP's successfully gapped in prelim test: 1655
Number of HSP's that attempted gapping in prelim test: 1045026
Number of HSP's gapped (non-prelim): 32112
length of query: 635
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 486
effective length of database: 8,863,183,186
effective search space: 4307507028396
effective search space used: 4307507028396
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)