BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006698
(635 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF
EUKARYOTIC Rad54
Length = 644
Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 145/556 (26%), Positives = 236/556 (42%), Gaps = 111/556 (19%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W + G ++NS GCI++ G GKT + +
Sbjct: 54 KVLRPHQREGVKFLWDCVTG----RRIENSY------GCIMADEMGLGKTLQCITLIWTL 103
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
+K P C+P ++++P S++ W E KW L G+ A+ D
Sbjct: 104 LKQSPDCKPEIDKVIVVSPSSLVRNWYNEVGKW-------------LGGRVQPVAI---D 147
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLF----EKLVSGDELSGILLDLPGLFVF 238
+ L+ ++ ++ T IL +SY F E L G GL +
Sbjct: 148 GGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGK---------VGLVIC 198
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR-------QEFGE 291
DEGH +N D + AL+ + +RR+++SGTP QN+ E + + V QEF +
Sbjct: 199 DEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKK 258
Query: 292 VLRTVRKSGREISKA---------KHASLISSIGRCANHRDDXXXXXXXXXIAPFVNVHK 342
GR+ + K LIS + RC R
Sbjct: 259 RFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRR-------------------T 299
Query: 343 GTVLQESLPGLRHSVVILQPDEFQKRL-------CKAVEGVKS-------------FVEL 382
+L + LP VV QK L K VE +++ +L
Sbjct: 300 SDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKL 359
Query: 383 NYCXXXXXXXXXXXXQQFFESFDVDSAKLARLKLDPEAGIKT---RFLLILLELSTNEKV 439
+ F + D+ + ++P+ K ++L + +T++KV
Sbjct: 360 CNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKV 419
Query: 440 LVFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIM 497
++ S Y + L L + R+R LY +DG +KKR + N+PSS I
Sbjct: 420 VLVSNYTQTLDLFEKLCRNR-------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIF 472
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
+ S+KA G+NL+GA+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E
Sbjct: 473 MLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEE 532
Query: 558 DKLRRQARKVWWSNMV 573
L+RQA K S+ V
Sbjct: 533 KILQRQAHKKALSSCV 548
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of
The Yeast Chd1 Chromatin Remodeler
Length = 800
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
+VL+FSQ + L ++ + L + G +DG +R+ SI+ N P S +
Sbjct: 574 RVLIFSQMVRMLDILGDYLSIK-----GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVF 628
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L ST+A GINL+ A VV+ D WNP + QA++RA+R+GQK V VY L++ +T+E
Sbjct: 629 LLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEE 688
Query: 558 DKLRRQARKVWWSNMVFPSSDGGGNDQTTASEP 590
+ L R +K+ + GN T +EP
Sbjct: 689 EVLERARKKMILEYAIISLGVTDGNKYTKKNEP 721
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 29/182 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
G+ I++ G GKT T+ F+ + + P +I+ P S + W + F+KW D+
Sbjct: 255 GDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDL-- 312
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL----FE 217
+ M N+K IR + Y+ G + + + +E
Sbjct: 313 --------------NCICYMGNQK----SRDTIREYEFYTNPRAKGKKTMKFNVLLTTYE 354
Query: 218 KLVSG-DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQ 276
++ EL I DE H +N ++ ++++L+ K R++++GTP QNN +
Sbjct: 355 YILKDRAELGSIKWQF---MAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIK 411
Query: 277 EL 278
EL
Sbjct: 412 EL 413
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
With Dsdna
pdb|1Z63|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
With Dsdna
Length = 500
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 7/125 (5%)
Query: 433 LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVL-NDPS 491
L +K+ +F+Q+++ +I + N EV ++ G+ K+R I+ N+PS
Sbjct: 338 LDEGDKIAIFTQFVDXGKIIRNIIEKELN----TEVPFLYGELSKKERDDIISKFQNNPS 393
Query: 492 SQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLIT 551
+ ++ S KA GINL A+RV+ D WNP VE QA R YR+GQ R V V+ LI+
Sbjct: 394 --VKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS 451
Query: 552 SETLE 556
TLE
Sbjct: 452 VGTLE 456
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 100/272 (36%), Gaps = 63/272 (23%)
Query: 52 THAQGTVWELV-PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISH 110
+H ++L+ P +++ + P+Q +GF W + G G ++
Sbjct: 19 SHMASKSFQLLEPYNIKANLRPYQIKGFS--WXRFXNKL-------------GFGICLAD 63
Query: 111 APGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELS 170
G GKT T+ K + ++I P S+L WEEE K+ + F +
Sbjct: 64 DXGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSKFAPHLRFAVFH----- 118
Query: 171 GKENNGAVALMDNRKRGRGKVGLIRYVKL--YSWKMGTGILGLSYRLFEKLVSGDELSGI 228
E+ + L D L+R +L WK
Sbjct: 119 --EDRSKIKLEDYDIILTTYAVLLRDTRLKEVEWKY------------------------ 152
Query: 229 LLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR-- 286
V DE +N T +FKA+ +K++ RI L+GTP +N +L + + +
Sbjct: 153 -------IVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIXTFLNPG 205
Query: 287 -----QEFGEVLRTVRKSGREISKAKHASLIS 313
EF T K G +K + ++IS
Sbjct: 206 LLGSYSEFKSKFATPIKKGDNXAKEELKAIIS 237
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN
Length = 500
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 7/125 (5%)
Query: 433 LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVL-NDPS 491
L +K+ +F+Q+++ +I + N EV ++ G+ K+R I+ N+PS
Sbjct: 338 LDEGDKIAIFTQFVDMGKIIRNIIEKELN----TEVPFLYGELSKKERDDIISKFQNNPS 393
Query: 492 SQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLIT 551
+ ++ S KA GINL A+RV+ D WNP VE QA R YR+GQ R V V+ LI+
Sbjct: 394 --VKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS 451
Query: 552 SETLE 556
TLE
Sbjct: 452 VGTLE 456
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 102/272 (37%), Gaps = 63/272 (23%)
Query: 52 THAQGTVWELV-PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISH 110
+H ++L+ P +++ + P+Q +GF W + G G ++
Sbjct: 19 SHMASKSFQLLEPYNIKANLRPYQIKGFS--WMRFMNKL-------------GFGICLAD 63
Query: 111 APGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELS 170
G GKT T+ K + ++I P S+L WEEE K+ + F +
Sbjct: 64 DMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSKFAPHLRFAVFH----- 118
Query: 171 GKENNGAVALMDNRKRGRGKVGLIRYVKL--YSWKMGTGILGLSYRLFEKLVSGDELSGI 228
E+ + L D L+R +L WK
Sbjct: 119 --EDRSKIKLEDYDIILTTYAVLLRDTRLKEVEWKY------------------------ 152
Query: 229 LLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR-- 286
V DE +N T +FKA+ +K++ RI L+GTP +N +L + ++ +
Sbjct: 153 -------IVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPG 205
Query: 287 -----QEFGEVLRTVRKSGREISKAKHASLIS 313
EF T K G ++K + ++IS
Sbjct: 206 LLGSYSEFKSKFATPIKKGDNMAKEELKAIIS 237
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
pdb|1Z5Z|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
Length = 271
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 7/125 (5%)
Query: 433 LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVL-NDPS 491
L +K+ +F+Q+++ +I + N EV ++ G+ K+R I+ N+PS
Sbjct: 109 LDEGDKIAIFTQFVDMGKIIRNIIEKELN----TEVPFLYGELSKKERDDIISKFQNNPS 164
Query: 492 SQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLIT 551
+ ++ S KA GINL A+RV+ D WNP VE QA R YR+GQ R V V+ LI+
Sbjct: 165 --VKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS 222
Query: 552 SETLE 556
TLE
Sbjct: 223 VGTLE 227
>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
pdb|3DMQ|B Chain B, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
Length = 968
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGAS 514
QL REG + +R + + + A+++L S + EG N AS
Sbjct: 518 QLEQVLREREGIRAAVFHEGXSIIERDRAAAWFAEEDTGAQVLLCS-EIGSEGRNFQFAS 576
Query: 515 RVVLLDVVWNPFVERQAISRAYRLGQKRVVHVY 547
V D+ +NP + Q I R R+GQ + ++
Sbjct: 577 HXVXFDLPFNPDLLEQRIGRLDRIGQAHDIQIH 609
>pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Atcc 13032
pdb|3Q2Q|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase
From Corynebacterium Glutamicum Complexed With Calcium
And Isoprenyl Diphosphate
Length = 360
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 15 PSRRAEWREYNNVDPSFLDDLNSRDSGFDSQTGCDPFTHAQGTVWELVPRDVRKKMFPHQ 74
PS A W N+V D L + SG SQ G D H T ELV +R+ + P
Sbjct: 128 PSANARWD--NSVAILAGDILLAHASGLMSQLGTDTVAHFAETFGELVTGQMRETVGPRD 185
Query: 75 REGFEFIWKNI 85
+ E + N+
Sbjct: 186 TDPIEH-YTNV 195
>pdb|1D2T|A Chain A, Crystal Structure Of Acid Phosphatase From Escherichia
Blattae
pdb|1EOI|A Chain A, Crystal Structure Of Acid Phosphatase From Escherichia
Blattae Complexed With The Transition State Analog
Molybdate
pdb|1EOI|B Chain B, Crystal Structure Of Acid Phosphatase From Escherichia
Blattae Complexed With The Transition State Analog
Molybdate
pdb|1EOI|C Chain C, Crystal Structure Of Acid Phosphatase From Escherichia
Blattae Complexed With The Transition State Analog
Molybdate
Length = 231
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYH 548
A+ +VL ++ NP + + + R Y LGQ RV+ YH
Sbjct: 156 ATALVLAEI--NPQRQNEILKRGYELGQSRVICGYH 189
>pdb|3IBG|A Chain A, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|B Chain B, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|C Chain C, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|D Chain D, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|E Chain E, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
pdb|3IBG|F Chain F, Crystal Structure Of Aspergillus Fumigatus Get3 With Bound
Adp
Length = 348
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 567 VWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYNNPSETLINAIIPQPKETELIET 626
+ + ++FP +G G +Q A ++ K LE++ +LY + + + ++ + + E +E
Sbjct: 269 IVVNQLLFPK-EGSGCEQCNARRKMQKKYLEQIEELYEDFNVVRMPLLVEEVRGKEKLEK 327
Query: 627 FGEFL 631
F E L
Sbjct: 328 FSEML 332
>pdb|1IW8|A Chain A, Crystal Structure Of A Mutant Of Acid Phosphatase From
Escherichia Blattae (g74d/i153t)
pdb|1IW8|B Chain B, Crystal Structure Of A Mutant Of Acid Phosphatase From
Escherichia Blattae (g74d/i153t)
pdb|1IW8|C Chain C, Crystal Structure Of A Mutant Of Acid Phosphatase From
Escherichia Blattae (g74d/i153t)
pdb|1IW8|D Chain D, Crystal Structure Of A Mutant Of Acid Phosphatase From
Escherichia Blattae (g74d/i153t)
pdb|1IW8|E Chain E, Crystal Structure Of A Mutant Of Acid Phosphatase From
Escherichia Blattae (g74d/i153t)
pdb|1IW8|F Chain F, Crystal Structure Of A Mutant Of Acid Phosphatase From
Escherichia Blattae (g74d/i153t)
Length = 231
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYH 548
A+ +VL ++ NP + + + R Y LGQ RV+ YH
Sbjct: 156 ATALVLAEI--NPQRQNEILKRGYELGQSRVICGYH 189
>pdb|1IG8|A Chain A, Crystal Structure Of Yeast Hexokinase Pii With The Correct
Amino Acid Sequence
Length = 486
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 214 RLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQN 273
+ FEK+ SG L G +L L + ++ +G +N D F + T + PF+N
Sbjct: 299 QTFEKMSSGYYL-GEILRLALMDMYKQGFIFKNQDLSKFDKPFVMDTSYPARIEEDPFEN 357
Query: 274 NFQELENTLSLVRQEFG 290
LE+T L + EFG
Sbjct: 358 ----LEDTDDLFQNEFG 370
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 527 VERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQ 563
VE + I+ Y++ +K +Y L+ + LEW L Q
Sbjct: 12 VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQ 48
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 527 VERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQ 563
VE + I+ Y++ +K +Y L+ + LEW L Q
Sbjct: 18 VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQ 54
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 527 VERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQ 563
VE + I+ Y++ +K +Y L+ + LEW L Q
Sbjct: 16 VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQ 52
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 527 VERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQ 563
VE + I+ Y++ +K +Y L+ + LEW L Q
Sbjct: 20 VEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQ 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,971,481
Number of Sequences: 62578
Number of extensions: 799303
Number of successful extensions: 1587
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1566
Number of HSP's gapped (non-prelim): 21
length of query: 635
length of database: 14,973,337
effective HSP length: 105
effective length of query: 530
effective length of database: 8,402,647
effective search space: 4453402910
effective search space used: 4453402910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)