BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006698
(635 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B3NAN8|RAD54_DROER DNA repair and recombination protein RAD54-like OS=Drosophila
erecta GN=okr PE=3 SV=1
Length = 784
Score = 185 bits (469), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 147/548 (26%), Positives = 257/548 (46%), Gaps = 89/548 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + + ++
Sbjct: 158 PHQREGVRFMYECVEG-----------KRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQG 206
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P ++++P S++ WE+EF KW L G+ L+
Sbjct: 207 PECKPTINKAIVVSPSSLVKNWEKEFTKW-------------LQGR-------LLCLPME 246
Query: 187 GRGKVGLIRYVKLYSW---KMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDE 240
G K IR ++ +S ++GT +L +SY R++ +++ E+ G+ + DE
Sbjct: 247 GGTKENTIRALEQFSMTSSRLGTPVLLISYETFRIYAEILCKYEV--------GMVICDE 298
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF----------- 289
GH +N D ++AL +KT+RR++LSGTP QN+ E + ++ V E
Sbjct: 299 GHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNF 358
Query: 290 -GEVLR----TVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGT 344
+LR + R+ + AK LI + +C R ++ L + V K T
Sbjct: 359 ESAILRGQNTDSTDAERQRAIAKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVICAKLT 418
Query: 345 VLQESLPGLRHSVVILQPDEFQKRL--CKAVEGVKSFVELNYCVSLLSVHPSLLPQQ--- 399
+Q L L+ D+ ++ L CK + + ++ + S HP+L+ ++
Sbjct: 419 SIQ-----LELYTNFLKSDQVRRSLADCKEKASLTALADITTLKKICS-HPNLIYEKITA 472
Query: 400 ----FFESFDVDSAKLARLKLDPEAGIK---TRFLLILLELSTNEKVLVFSQYIEPLTLI 452
F S +V + L+PE K F+L + N+KV++ S Y + L L
Sbjct: 473 RDKGFENSQNVLPSNYNAKDLNPELSGKFMLLDFMLAAIRADGNDKVVLISNYTQTLDLF 532
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
EQL + + + +DG +KKR ++ NDP S + + + S+KA G+NL+G
Sbjct: 533 -EQLARKRKY----GFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIG 587
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNM 572
A+R+ + D WNP + QA++R +R GQK+ ++Y L+ S ++E L+RQ K S+
Sbjct: 588 ANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSST 647
Query: 573 VFPSSDGG 580
+ +++
Sbjct: 648 IIDNNESA 655
>sp|O76460|RAD54_DROME DNA repair and recombination protein RAD54-like OS=Drosophila
melanogaster GN=okr PE=1 SV=1
Length = 784
Score = 182 bits (462), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 147/550 (26%), Positives = 256/550 (46%), Gaps = 93/550 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + + ++
Sbjct: 158 PHQREGVRFMYECVEG-----------KRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQG 206
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P ++++P S++ WE+EF KW L G+ L+
Sbjct: 207 PECKPTINKAIVVSPSSLVKNWEKEFTKW-------------LHGR-------LLCLPME 246
Query: 187 GRGKVGLIRYVKLYSW---KMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDE 240
G K IR ++ +S ++GT +L +SY R++ +++ E+ G+ + DE
Sbjct: 247 GGTKENTIRALEQFSMTSARLGTPVLLISYETFRIYAEILCKYEV--------GMVICDE 298
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF----------- 289
GH +N D ++AL +KT+RR++LSGTP QN+ E + ++ V E
Sbjct: 299 GHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNF 358
Query: 290 -GEVLR------TVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHK 342
+LR T ++ R I K + LI + +C R ++ L + V K
Sbjct: 359 ESAILRGQNTDSTEQERQRAIEKTQE--LIGLVDQCIIRRTNQILTKYLPVKFEMVICAK 416
Query: 343 GTVLQESLPGLRHSVVILQPDEFQKRL--CKAVEGVKSFVELNYCVSLLSVHPSLLPQQ- 399
T +Q L L+ D+ ++ L C + + ++ + S HP L+ ++
Sbjct: 417 LTAIQ-----LELYTNFLKSDQVRRSLADCNEKASLTALADITTLKKICS-HPDLIYEKL 470
Query: 400 ------FFESFDVDSAKLARLKLDPEAGIK---TRFLLILLELSTNEKVLVFSQYIEPLT 450
F S +V + L+PE K F+L + N+KV++ S Y + L
Sbjct: 471 TAREKGFENSQNVLPSNYKPKDLNPELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLD 530
Query: 451 LIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINL 510
L EQL + + + +DG +KKR ++ NDP S + + + S+KA G+NL
Sbjct: 531 LF-EQLARKRKY----GFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNL 585
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS 570
+GA+R+ + D WNP + QA++R +R GQK+ ++Y L+ S ++E L+RQ K S
Sbjct: 586 IGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLS 645
Query: 571 NMVFPSSDGG 580
+ + +++
Sbjct: 646 STIIDNNESA 655
>sp|B4NXB8|RAD54_DROYA DNA repair and recombination protein RAD54-like OS=Drosophila
yakuba GN=okr PE=3 SV=2
Length = 784
Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 146/548 (26%), Positives = 255/548 (46%), Gaps = 89/548 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + + ++
Sbjct: 158 PHQREGVRFMYECVEG-----------KRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQG 206
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P ++++P S++ WE+EF KW L G+ L+
Sbjct: 207 PECKPTINKAIVVSPSSLVKNWEKEFTKW-------------LQGR-------LLCLPME 246
Query: 187 GRGKVGLIRYVKLYSW---KMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDE 240
G K IR ++ +S ++GT +L +SY R++ +++ E+ G+ + DE
Sbjct: 247 GGTKENTIRALEQFSMTSSRLGTPVLLISYETFRIYAEILCKYEV--------GMVICDE 298
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF----------- 289
GH +N D ++AL +KT+RR++LSGTP QN+ E + ++ V E
Sbjct: 299 GHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYYSLVNFVNPEMLGTAAVFKRNF 358
Query: 290 -GEVLR---TVRKSG-REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGT 344
+LR T G R+ + K LI + +C R ++ L + V K T
Sbjct: 359 ESAILRGQNTDSTEGERQRAIEKTQELIGLVDQCIIRRTNQILTKYLPVKFEMVICAKLT 418
Query: 345 VLQESLPGLRHSVVILQPDEFQKRL--CKAVEGVKSFVELNYCVSLLSVHPSLLPQQ--- 399
+Q L L+ D+ ++ L C + + ++ + S HP L+ ++
Sbjct: 419 SIQ-----LELYTNFLKSDQVRRSLADCNEKASLTALADITTLKKICS-HPDLIYEKITA 472
Query: 400 ----FFESFDVDSAKLARLKLDPEAGIK---TRFLLILLELSTNEKVLVFSQYIEPLTLI 452
F S +V + L+PE K F+L + N+KV++ S Y + L L
Sbjct: 473 REKGFENSQNVLPSNYNTKDLNPELSGKFMLLDFMLAAIRADGNDKVVLISNYTQTLDLF 532
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
EQL + + + +DG +KKR ++ NDP S + + + S+KA G+NL+G
Sbjct: 533 -EQLARKRKY----GFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIG 587
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNM 572
A+R+ + D WNP + QA++R +R GQK+ ++Y ++ S ++E L+RQ K S+
Sbjct: 588 ANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRMVASGSIEEKILQRQTHKKSLSST 647
Query: 573 VFPSSDGG 580
+ +++
Sbjct: 648 IIDNNESA 655
>sp|Q29KH2|RAD54_DROPS DNA repair and recombination protein RAD54-like OS=Drosophila
pseudoobscura pseudoobscura GN=okr PE=3 SV=2
Length = 782
Score = 180 bits (456), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 145/551 (26%), Positives = 258/551 (46%), Gaps = 93/551 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + + +K
Sbjct: 154 PHQREGVRFMYECVEG-----------KRGNFNGCIMADEMGLGKTLQCVALVWTLLKQS 202
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
C+P +I++P S++ WE+EF KW L G+ + A+
Sbjct: 203 AECKPTINKCIIVSPSSLVKNWEKEFTKW-------------LHGRMHCLAM-------E 242
Query: 187 GRGKVGLIRYVKLYSW----KMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFD 239
G K +R ++ +S ++GT +L +SY R++ +++ E+ G+ + D
Sbjct: 243 GGSKENTVRALEQFSMNASTRLGTPVLLISYETFRIYAEILCKYEV--------GMVICD 294
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF---------- 289
EGH +N D ++AL +KT+RR++LSGTP QN+ E + ++ V E
Sbjct: 295 EGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRN 354
Query: 290 --GEVLR--TVRKSGREISKA--KHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
+LR + +E +A K LI + +C R ++ L + V K
Sbjct: 355 FENCILRGQNADSTDKERDRALEKTQELIKLVDQCIIRRTNQILTKYLPVKFEMVICAKL 414
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRL--CKAVEGVKSFVELNYCVSLLSVHPSLLPQQFF 401
T +Q L+ L+ D+ ++ L CK + + ++ L S HP+L+ ++
Sbjct: 415 TPIQ-----LQLYTNFLKSDQVRRSLADCKEKASLTALADITTLKKLCS-HPNLICEKIA 468
Query: 402 ---ESFDVDSAKLARLKLDPEAGIKTR---------FLLILLELSTNEKVLVFSQYIEPL 449
+ F+ +S + + +P+ I F+L + N+KV++ S Y + L
Sbjct: 469 AEEKGFE-NSQNILPINYNPKGEINPELSGKFKLLDFMLAAIRAHGNDKVVLISNYTQTL 527
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509
L EQL + + + +DG +KKR ++ NDP S + + S+KA G+N
Sbjct: 528 DLF-EQLARKRKY----GFVRLDGTMSIKKRSKVVDRFNDPESDCFLFMLSSKAGGCGLN 582
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
L+GA+R+ + D WNP + QA++R +R GQK+ ++Y L+ S ++E L+RQ K
Sbjct: 583 LIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSL 642
Query: 570 SNMVFPSSDGG 580
S+ + +++
Sbjct: 643 SSTIIDNNESA 653
>sp|B3MMA5|RAD54_DROAN DNA repair and recombination protein RAD54-like OS=Drosophila
ananassae GN=okr PE=3 SV=1
Length = 791
Score = 179 bits (453), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 146/548 (26%), Positives = 253/548 (46%), Gaps = 89/548 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + + ++
Sbjct: 161 PHQREGVRFMYECVEG-----------KKGDFNGCIMADEMGLGKTLQCVTLVWTLLRQG 209
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P +P ++++P S++ WE+EF KW L G+ L+
Sbjct: 210 PESKPTINKAIVVSPSSLVKNWEKEFTKW-------------LQGR-------LLCLAME 249
Query: 187 GRGKVGLIRYVKLYSW---KMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDE 240
G K IR ++ +S K+GT +L +SY R++ +++ E+ G+ + DE
Sbjct: 250 GGTKENTIRVLEQFSMTSSKLGTPVLLISYETFRIYAEILCKYEV--------GMVICDE 301
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF----------- 289
GH +N D ++AL +KT+RR++LSGTP QN+ E + ++ V E
Sbjct: 302 GHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNF 361
Query: 290 -GEVLRTVRKSG----REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGT 344
+LR R+ + K LI + +C R ++ L + V K T
Sbjct: 362 ENSILRGQNADSTEGERKKAIEKTQELIGLVDQCIIRRTNQILTKYLPIKFEMVICVKLT 421
Query: 345 VLQESLPGLRHSVVILQPDEFQKRL--CKAVEGVKSFVELNYCVSLLSVHPSLLPQQ--- 399
+Q L+ L D+ ++ L C + + ++ + S HP L+ Q+
Sbjct: 422 AIQ-----LQLYTNFLNSDQVRRSLADCNEKASLTALADITTLKKICS-HPDLIHQKIEA 475
Query: 400 ----FFESFDVDSAKLARLKLDPEAGIK---TRFLLILLELSTNEKVLVFSQYIEPLTLI 452
F S +V + ++ PE K F+L + + N+KV++ S Y + L L
Sbjct: 476 KEKGFENSQNVLPSNYKPKEICPEWSGKFMLLDFMLAAIRAAGNDKVVLISNYTQTLDLF 535
Query: 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512
+ R R + G + +DG +KKR ++ NDP S+ + + S+KA G+NL+G
Sbjct: 536 EQLARKR---KYG--FVRLDGTMSIKKRSKVVDKFNDPDSECFLFMLSSKAGGCGLNLIG 590
Query: 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNM 572
A+R+ + D WNP + QA++R +R GQK+ ++Y L+ S T+E L+RQ K S+
Sbjct: 591 ANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGTIEEKILQRQTHKKSLSST 650
Query: 573 VFPSSDGG 580
+ +++
Sbjct: 651 IIDNNESS 658
>sp|B4JCS7|RAD54_DROGR DNA repair and recombination protein RAD54-like OS=Drosophila
grimshawi GN=okr PE=3 SV=1
Length = 786
Score = 179 bits (453), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 147/544 (27%), Positives = 251/544 (46%), Gaps = 82/544 (15%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + ++
Sbjct: 151 PHQREGVRFMYECVEG-----------KRGSFNGCIMADEMGLGKTLQCVTLTWTLLRQS 199
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
C+P ++++P S++ WE+EF KW L G+ + A M+ +
Sbjct: 200 ADCKPTISKAIVVSPSSLVKNWEKEFTKW-------------LHGRMHCLA---MEGGSK 243
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDEGHT 243
L ++ S + GT +L +SY RL+ ++ E+ G+ + DEGH
Sbjct: 244 EETTRTLEQFAMNTSTRCGTPVLLISYETFRLYAHILCKTEV--------GMVICDEGHR 295
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF------------GE 291
+N D ++AL +KT+RR++LSGTP QN+ E + ++ V E
Sbjct: 296 LKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTATDFKRNFENA 355
Query: 292 VLR----TVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQ 347
+LR + RE + K LI + +C R ++ L + V K T +Q
Sbjct: 356 ILRGQNADSTDTERERALLKTQELIGLVNQCIIRRTNQILTKYLPVKFEMVVCAKLTAVQ 415
Query: 348 ESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSL--LSVHPSLLPQQ------ 399
L+ L+ D+ + L E S L+ +L L HP L+ ++
Sbjct: 416 -----LQIYTNFLKSDQVCRSLADCNEKT-SLTALSDITTLKKLCNHPDLIYEKLAAREK 469
Query: 400 -FFESFDVDSAKLARLKLDPEAGIK---TRFLLILLELSTNEKVLVFSQYIEPLTLIMEQ 455
F S +V A ++PE K F+L + ++++KV++ S Y + L L EQ
Sbjct: 470 GFENSQNVLPANYKPKDINPELSGKFMLLDFMLAAIRANSDDKVVLISNYTQTLDLF-EQ 528
Query: 456 LRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515
L + + + +DG +KKR ++ NDPSS + + S+KA G+NL+GA+R
Sbjct: 529 LARKRKY----SYVRLDGTMTIKKRSKVVDRFNDPSSDCFLFMLSSKAGGCGLNLIGANR 584
Query: 516 VVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFP 575
+ + D WNP + QA++R +R GQK+ ++Y L+ S ++E L+RQ K S+ +
Sbjct: 585 LFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIID 644
Query: 576 SSDG 579
+++
Sbjct: 645 NNES 648
>sp|B4M9A8|RAD54_DROVI DNA repair and recombination protein RAD54-like OS=Drosophila
virilis GN=okr PE=3 SV=1
Length = 786
Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 141/545 (25%), Positives = 252/545 (46%), Gaps = 82/545 (15%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + ++
Sbjct: 151 PHQREGVRFMYECVEG-----------KRGNFNGCIMADEMGLGKTLQCVTLTWTLLRQS 199
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P ++++P S++ WE+EF KW L G+ + A M+ +
Sbjct: 200 PDCKPTISKAIVVSPSSLVKNWEKEFTKW-------------LHGRMHCLA---MEGGSK 243
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDEGHT 243
L ++ + + GT +L +SY RL+ ++ E+ G+ + DEGH
Sbjct: 244 EDTTRTLEQFAMNTATRCGTPVLLISYETFRLYSHILCKTEV--------GMVICDEGHR 295
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF------------GE 291
+N D ++AL +KT+RR++LSGTP QN+ E + ++ V E
Sbjct: 296 LKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTGSDFKRNFENA 355
Query: 292 VLR----TVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQ 347
+LR + RE + K L+ + +C R ++ L + V K T +Q
Sbjct: 356 ILRGQNADSTDAERERALEKTQELVGLVNQCIIRRTNQILTKYLPVKFEMVVCAKLTAVQ 415
Query: 348 ESLPGLRHSVVILQPDEFQKRL--CKAVEGVKSFVELNYCVSLLSVHPSLLPQQ------ 399
L+ L+ D+ ++ L C + + ++ L + HP L+ ++
Sbjct: 416 -----LQLYTNFLKSDQVRRSLADCTDKTTLTALADITTLKKLCN-HPDLIYEKIAAREK 469
Query: 400 -FFESFDVDSAKLARLKLDPEAGIK---TRFLLILLELSTNEKVLVFSQYIEPLTLIMEQ 455
F S +V ++PE K F+L + ++++KV++ S Y + L L EQ
Sbjct: 470 GFENSQNVLPPNYKPKDVNPELSGKFMLLDFMLAAIRANSDDKVVLISNYTQTLDLF-EQ 528
Query: 456 LRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515
L + + + +DG +KKR ++ NDP++ + + S+KA G+NL+GA+R
Sbjct: 529 LARKRKY----SYVRLDGTMTIKKRSKVVDRFNDPATDCFLFMLSSKAGGCGLNLIGANR 584
Query: 516 VVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFP 575
+ + D WNP + QA++R +R GQK+ ++Y L+ S ++E L+RQ K S+ +
Sbjct: 585 LFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSSIID 644
Query: 576 SSDGG 580
++D
Sbjct: 645 NNDSA 649
>sp|B4KHL5|RAD54_DROMO DNA repair and recombination protein RAD54-like OS=Drosophila
mojavensis GN=okr PE=3 SV=1
Length = 783
Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 144/543 (26%), Positives = 251/543 (46%), Gaps = 78/543 (14%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + ++
Sbjct: 151 PHQREGVRFMYECVEG-----------KRGNFNGCIMADEMGLGKTLQCVTLTWTLLRQS 199
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P +I++P S++ WE+EF KW L G+ + A M+ +
Sbjct: 200 PDCKPTISKAIIVSPSSLVKNWEKEFTKW-------------LHGRMHCLA---MEGGSK 243
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFDEGHT 243
L ++ + + GT +L +SY RL+ ++ E+ G+ + DEGH
Sbjct: 244 EDTTRALEQFAMNTATRCGTPVLLISYETFRLYAHILCKTEV--------GMVICDEGHR 295
Query: 244 PRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQE-FGEVLRTVRKSGRE 302
+N D ++AL +KT+RR++LSGTP QN+ E + ++ V E G R
Sbjct: 296 LKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENS 355
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI--L 360
I + ++A + R +K +EL + + +L + LP VV L
Sbjct: 356 ILRGQNADSTDA----ERQRALQKTQELIGLVNQCIIRRTNQILTKYLPVKFEMVVCVKL 411
Query: 361 QPDEFQ--KRLCKAVEGVKSFVELNYCVSLLSV-----------HPSLLPQQ-------F 400
P + Q K+ + +S + N SL ++ HP L+ ++ F
Sbjct: 412 TPVQLQIYTNFLKSDQVRRSLADCNEKASLTALADITTLKKLCNHPDLIYEKIAAKEKGF 471
Query: 401 FESFDVDSAKLARLKLDPEAGIK---TRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLR 457
S +V ++PE K F+L + ++++KV++ S Y + L L EQL
Sbjct: 472 ENSQNVLPPNYKPKDVNPELSGKFMLLDFMLAAIRANSDDKVVLISNYTQTLDLF-EQLA 530
Query: 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
+ + + +DG +KKR ++ NDPS+ + + S+KA G+NL+GA+R+
Sbjct: 531 RKRKY----TYVRLDGTMTIKKRSKVVDRFNDPSTDCFLFMLSSKAGGCGLNLIGANRLF 586
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSS 577
+ D WNP + QA++R +R GQK+ ++Y L+ S ++E L+RQ K S+ + ++
Sbjct: 587 MFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNN 646
Query: 578 DGG 580
+
Sbjct: 647 ESS 649
>sp|B4GS98|RAD54_DROPE DNA repair and recombination protein RAD54-like OS=Drosophila
persimilis GN=okr PE=3 SV=1
Length = 782
Score = 178 bits (451), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 145/551 (26%), Positives = 257/551 (46%), Gaps = 93/551 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F+++ + G G NGCI++ G GKT + + +K
Sbjct: 154 PHQREGVRFMYECVEG-----------KRGNFNGCIMADEMGLGKTLQCVALVWTLLKQS 202
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
C+P +I++P S++ WE+EF KW L G+ + A+
Sbjct: 203 AECKPTINKCIIVSPSSLVKNWEKEFTKW-------------LHGRMHCLAM-------E 242
Query: 187 GRGKVGLIRYVKLYSW----KMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFD 239
G K +R ++ +S ++GT +L +SY R++ +++ E+ G+ + D
Sbjct: 243 GGSKENTVRALEQFSMNASTRLGTPVLLISYETFRIYAEILCKYEV--------GMVICD 294
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEF---------- 289
EGH +N D ++AL +KT+RR++LSGTP QN+ E + ++ V E
Sbjct: 295 EGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRN 354
Query: 290 --GEVLR--TVRKSGREISKA--KHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
+LR + +E +A K LI + +C R ++ L + V K
Sbjct: 355 FENCILRGQNADSTDKERDRALEKTQELIKLVDQCIIRRTNQILTKYLPVKFEMVICAKL 414
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRL--CKAVEGVKSFVELNYCVSLLSVHPSLLPQQFF 401
T +Q L+ L+ D+ ++ L CK + + ++ L S HP+L+ ++
Sbjct: 415 TPIQ-----LQLYTNFLKSDQVRRSLADCKEKASLTALADITTLKKLCS-HPNLICEKIA 468
Query: 402 ---ESFDVDSAKLARLKLDPEAGIKTR---------FLLILLELSTNEKVLVFSQYIEPL 449
+ F+ +S + + +P+ I F+L + N+KV++ S Y + L
Sbjct: 469 AGEKGFE-NSQNILPINYNPKGEINPELSGKFKLLDFMLAAIRAHGNDKVVLISNYTQTL 527
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509
L R R + G + +DG +KKR ++ NDP S + + S+KA G+N
Sbjct: 528 DLFELLARKR---KYG--FVRLDGTMSIKKRSKVVDRFNDPESDCFLFMLSSKAGGCGLN 582
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
L+GA+R+ + D WNP + QA++R +R GQK+ ++Y L+ S ++E L+RQ K
Sbjct: 583 LIGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSL 642
Query: 570 SNMVFPSSDGG 580
S+ + +++
Sbjct: 643 SSTIIDNNESA 653
>sp|B4MX21|RAD54_DROWI DNA repair and recombination protein RAD54-like OS=Drosophila
willistoni GN=okr PE=3 SV=1
Length = 784
Score = 177 bits (448), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 142/550 (25%), Positives = 253/550 (46%), Gaps = 92/550 (16%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG F++ + G G NGCI++ G GKT + + ++
Sbjct: 155 PHQREGVRFMYDCVEG-----------KKGNFNGCIMADEMGLGKTLQCVTLVWTLLRQS 203
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
C+P +I++P S++ WE+EF KW L G+ + A+
Sbjct: 204 CECKPTITKAIIVSPSSLVKNWEKEFTKW-------------LHGRMHCLAM-------E 243
Query: 187 GRGKVGLIRYVKLYSW----KMGTGILGLSY---RLFEKLVSGDELSGILLDLPGLFVFD 239
G K I+ ++ +S ++GT +L +SY R++ ++ +E+ G+ + D
Sbjct: 244 GGSKEDTIKALEQFSMNTSTRLGTPVLLISYETFRIYANILCQNEV--------GMVICD 295
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS 299
EGH +N D ++AL +KT+RR++LSGTP QN+ E + ++ V E +++
Sbjct: 296 EGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRN 355
Query: 300 ----------------GREISKAKHASLISSIGRCANHRDDEKL-KELKEKIAPFVNVHK 342
RE + K LI + +C R ++ L K L K + V
Sbjct: 356 FENPILKGQNTDSSDKERERALEKTQELIGLVNQCIIRRTNQILTKYLPVKFEMVICVRL 415
Query: 343 GTVLQESLPGLRHSVVILQPDEFQKRL--CKAVEGVKSFVELNYCVSLLSVHPSLLPQQ- 399
+V L L+ D+ ++ L C + + ++ L S HP L+ ++
Sbjct: 416 TSV------QLEFYTNFLKSDKVRRSLADCNEKASLTALADITTLKKLCS-HPDLIYEKM 468
Query: 400 ------FFESFDVDSAKLARLKLDPEAGIK---TRFLLILLELSTNEKVLVFSQYIEPLT 450
F S ++ L+PE K F+L + ++++KV++ S Y + L
Sbjct: 469 LARDKGFENSQNILPTNYKPKDLNPELSGKFMLLDFMLATIRANSDDKVVLISNYTQTLD 528
Query: 451 LIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINL 510
L EQL + + + +DG +KKR ++ NDP + + + S+KA G+NL
Sbjct: 529 LF-EQLARKRKY----TFVRLDGTMTIKKRSKVVDRFNDPENDCFLFMLSSKAGGCGLNL 583
Query: 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS 570
+GA+R+ + D WNP + QA++R +R GQK+ ++Y L+ S ++E L+RQ K S
Sbjct: 584 IGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLS 643
Query: 571 NMVFPSSDGG 580
+ + +++
Sbjct: 644 STIIDNNESA 653
>sp|P41410|RAD54_SCHPO DNA repair protein rhp54 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp54 PE=1 SV=2
Length = 852
Score = 174 bits (442), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 146/550 (26%), Positives = 235/550 (42%), Gaps = 104/550 (18%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ EG +F++K + G ID NGCI++ G GKT + L +K
Sbjct: 266 PHQIEGVKFLYKCVTGRID----------RCANGCIMADEMGLGKTLQCIALLWTLLKQS 315
Query: 132 PRC------RPVIIAPRSMLLTWEEEFKKW-GID--IPFYNLNKPELSGKENNGAVALMD 182
P+ + +I P S++ W E KW G D PF L GK + + +
Sbjct: 316 PQAGKPTIEKAIITCPSSLVKNWANELVKWLGKDAITPFI------LDGKSSKQELIM-- 367
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
L ++ ++ ++ +L SY V + I G+ + DEGH
Sbjct: 368 ---------ALQQWASVHGRQVTRPVLIASYETLRSYVEHLNNAEI-----GMLLCDEGH 413
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV-------RQEFGEVLRT 295
+N D+ F AL ++ +RR+ILSGTP QN+ E + L+ RQEF +
Sbjct: 414 RLKNSDSLTFTALDKLNVQRRVILSGTPIQNDLSEYFSLLNFANPGLLGSRQEFRKNYEI 473
Query: 296 VRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRH 355
GR+ + D KL EL + + F+ +L + LP
Sbjct: 474 PILKGRDADGTEKDK----------ENGDAKLAELAKIVNRFIIRRTNDILSKYLPVKYE 523
Query: 356 SVVILQPDEFQ-------------------------------KRLCKAVEGVKSFVELNY 384
VV EFQ K++C + + +L
Sbjct: 524 HVVFCNLSEFQLSLYKHFITSPEINKILRGTGSQPLKAIGLLKKICNHPDLLNLTEDLEG 583
Query: 385 CVSLLSVHPSLLPQQFF-ESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFS 443
C +L P +P++ ++DS+ ++ + +L ++ T++K+++ S
Sbjct: 584 CEALFP--PGFIPRELRGRDRNIDSSLSGKM-------LVLERMLYQIKQETDDKIVLIS 634
Query: 444 QYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKA 503
Y L L + R R G + L +DG +V KRQ ++ NDP A + L S+KA
Sbjct: 635 NYTSTLDLFEQLCRAR-----GYKALRLDGTMNVNKRQRLVDTFNDPEKDAFVFLLSSKA 689
Query: 504 CCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQ 563
GINL+GA+R++L D WNP ++QA++R +R GQK+ VY I + T+E +RQ
Sbjct: 690 GGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQ 749
Query: 564 ARKVWWSNMV 573
+ K S+ V
Sbjct: 750 SHKQSLSSCV 759
>sp|O12944|RAD54_CHICK DNA repair and recombination protein RAD54-like (Fragment)
OS=Gallus gallus GN=RAD54L PE=2 SV=1
Length = 733
Score = 172 bits (436), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 144/532 (27%), Positives = 240/532 (45%), Gaps = 71/532 (13%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQREG +F+W + S G +GCI++ G GKT + + ++
Sbjct: 144 PHQREGVKFLWDCV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQS 193
Query: 132 PRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
P C+P ++++P S++ W E +KW L G+ A+ +
Sbjct: 194 PDCKPEIEKAMVVSPSSLVRNWYNEVEKW-------------LGGRIQPLAIDGGSKEEI 240
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRN 246
R VG + L ++ + IL +SY F + + GL + DEGH +N
Sbjct: 241 DRKLVGSMNQRGL---RVPSPILIISYETFRLHAEALQKGSV-----GLVICDEGHRLKN 292
Query: 247 DDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKA 306
+ ++AL+ + T RR+++SGTP QN+ E SLV +L T ++ R
Sbjct: 293 SENQTYQALNSLNTPRRVLISGTPIQNDLLEY---FSLVHFVNSGILGTAQEFKRHFELP 349
Query: 307 KHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI--LQP-- 362
+ + +E+LKEL + + +L + LP VV L P
Sbjct: 350 ILKGRDADASEAERQKGEERLKELISIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQ 409
Query: 363 DEFQKRLCKAVEGVKSFVELNYCVSLLSV---------HPSLL-------PQQFFESFDV 406
E K K + V+ E VS LS HP+L+ + F + D+
Sbjct: 410 AELYKNFLKQAKPVEELKEGKINVSSLSSITSLKKLCNHPALIYDKCVEEEEGFMGALDL 469
Query: 407 DSAKLARLKLDPEAGIKT---RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWR 463
A + ++P+ K ++L + + ++N+KV++ S Y + L L + R+R
Sbjct: 470 FPAGYSTKSVEPQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFEKLCRNR---- 525
Query: 464 EGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDV 521
LY +DG +KKR + N PSS I + S+KA G+NL+GA+R+V+ D
Sbjct: 526 ---RYLYVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDP 582
Query: 522 VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ K S+ V
Sbjct: 583 DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCV 634
>sp|Q92698|RAD54_HUMAN DNA repair and recombination protein RAD54-like OS=Homo sapiens
GN=RAD54L PE=1 SV=2
Length = 747
Score = 162 bits (410), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 142/540 (26%), Positives = 240/540 (44%), Gaps = 79/540 (14%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W+ + S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVKFLWECV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E KW L G+ A+ D
Sbjct: 201 LRQSPECKPEIDKAVVVSPSSLVKNWYNEVGKW-------------LGGRIQPLAI---D 244
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 245 GGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSV-----GLVICDEGH 299
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T E
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGT----AHE 352
Query: 303 ISKAKHASLISSIGRCANHRD----DEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358
K ++ A+ D +E+L+EL + + +L + LP VV
Sbjct: 353 FKKHFELPILKGRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVV 412
Query: 359 I--LQP--DEFQKRLCKAVEGVKSFVE---------LNYCVSLLSVHPSLLPQQ------ 399
L P E KR + + + +E + L HP+L+ +
Sbjct: 413 CCRLTPLQTELYKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEED 472
Query: 400 -FFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQ 455
F + D+ + L+P+ K L +L ++ +++KV++ S Y + L L +
Sbjct: 473 GFVGALDLFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKL 532
Query: 456 LRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513
R R LY +DG +KKR + N PSS + + S+KA G+NL+GA
Sbjct: 533 CRAR-------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGA 585
Query: 514 SRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+R+V+ D WNP + QA++R +R GQK+ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 586 NRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
>sp|P70270|RAD54_MOUSE DNA repair and recombination protein RAD54-like OS=Mus musculus
GN=Rad54l PE=1 SV=2
Length = 747
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 139/536 (25%), Positives = 237/536 (44%), Gaps = 71/536 (13%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127
K + PHQREG +F+W+ + S G +GCI++ G GKT + +
Sbjct: 151 KVLRPHQREGVKFLWECV----------TSRRIPGSHGCIMADEMGLGKTLQCITLMWTL 200
Query: 128 MKLHPRCRP-----VIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182
++ P C+P V+++P S++ W E +KW L G+ A+ D
Sbjct: 201 LRQSPECKPEIEKAVVVSPSSLVKNWYNEVEKW-------------LGGRIQPLAI---D 244
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGH 242
+ L ++ ++ + IL +SY F V + + GL + DEGH
Sbjct: 245 GGSKDEIDRKLEGFMNQRGARVPSPILIISYETFRLHVGVLKKGNV-----GLVICDEGH 299
Query: 243 TPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302
+N + ++AL + T RR+++SGTP QN+ E SLV +L T + +
Sbjct: 300 RLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEY---FSLVHFVNSGILGTAHEFKKH 356
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI--L 360
S ++ R +E+L+EL + + +L + LP VV L
Sbjct: 357 FELPILKSRDAAASEADRQRGEERLRELIGIVNRCLIRRTSDILSKYLPVKIEQVVCCRL 416
Query: 361 QP--DEFQKRLCKAVEGVKSFVE---------LNYCVSLLSVHPSLLPQQFFESFDVDSA 409
P E KR + + + E + L HP+L+ + D
Sbjct: 417 TPLQTELYKRFLRQAKPEEELREGKMSVSSLSSITSLKKLCNHPALIYDKCVAEEDGFEG 476
Query: 410 KLARL-------KLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQLRHR 459
L ++P+ K L +L ++ +++KV++ S Y + L L + R R
Sbjct: 477 TLGIFPPGYNSKAVEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRVR 536
Query: 460 FNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
LY +DG +KKR + N PSS + + S+KA G+NL+GA+R+V
Sbjct: 537 -------RYLYVRLDGTMSIKKRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLV 589
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573
+ D WNP + QA++R +R GQK++ ++Y L+++ T+E +RQ+ K S+ V
Sbjct: 590 MFDPDWNPANDEQAMARVWRDGQKKICYIYRLLSAGTIEEKIFQRQSHKKALSSCV 645
>sp|P32863|RAD54_YEAST DNA repair and recombination protein RAD54 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RAD54 PE=1
SV=1
Length = 898
Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 144/577 (24%), Positives = 245/577 (42%), Gaps = 102/577 (17%)
Query: 68 KKMFPHQREGFEFIWKNIAGGIDLDEL------------------------KNSTSTGGG 103
K + PHQ EG F+++ + G + D L K + G
Sbjct: 269 KILRPHQVEGVRFLYRCVTGLVMKDYLEAEAFNTSSEDPLKSDEKALTESQKTEQNNRGA 328
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR-----PVIIAPRSMLLTWEEEFKKWGID 158
GCI++ G GKT + + ++ P+ + +I+ P S++ W E KW
Sbjct: 329 YGCIMADEMGLGKTLQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNWANELIKWL-- 386
Query: 159 IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTG------ILGLS 212
N +D +K G +++W G +L +S
Sbjct: 387 -------------GPNTLTPLAVDGKKSSMGGGNTTVSQAIHAWAQAQGRNIVKPVLIIS 433
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y + V D+L + GL + DEGH +N D+ F AL I RR+ILSGTP Q
Sbjct: 434 YETLRRNV--DQLKNCNV---GLMLADEGHRLKNGDSLTFTALDSISCPRRVILSGTPIQ 488
Query: 273 NNFQELENTLSLV-------RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDE 325
N+ E LS R EF + GR+ + A + + +
Sbjct: 489 NDLSEYFALLSFSNPGLLGSRAEFRKNFENPILRGRD-ADATDKEIT---------KGEA 538
Query: 326 KLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI--LQP--DEFQKRLCKAVEGVKSFVE 381
+L++L ++ F+ +L + LP V+ L+P +E +L K+ E K
Sbjct: 539 QLQKLSTIVSKFIIRRTNDILAKYLPCKYEHVIFVNLKPLQNELYNKLIKSREVKKVVKG 598
Query: 382 LNYCVSLLSV--------HPSLLPQQFFE------------SFDVDSAKLARLKLDPEAG 421
+ L ++ HP+LL + + A+ + K +
Sbjct: 599 VGGSQPLRAIGILKKLCNHPNLLNFEDEFDDEDDLELPDDYNMPGSKARDVQTKYSAKFS 658
Query: 422 IKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQ 481
I RFL ++ +++K+++ S Y + L LI + R++ + +DG + KRQ
Sbjct: 659 ILERFLH-KIKTESDDKIVLISNYTQTLDLIEKMCRYKH-----YSAVRLDGTMSINKRQ 712
Query: 482 SSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQK 541
++ NDP Q I L S+KA GINL+GA+R++L+D WNP ++QA++R +R GQK
Sbjct: 713 KLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQQALARVWRDGQK 772
Query: 542 RVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578
+ +Y I++ T+E +RQ+ K+ S+ V + +
Sbjct: 773 KDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDAKE 809
>sp|A4PBL4|RAD54_ORYSJ DNA repair and recombination protein RAD54 OS=Oryza sativa subsp.
japonica GN=RAD54 PE=1 SV=1
Length = 980
Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 157/575 (27%), Positives = 245/575 (42%), Gaps = 105/575 (18%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT--GLTLVF---LQA 126
PHQREG +F++ ++G ++ D G +GCI++ G GKT +TL++ Q
Sbjct: 237 PHQREGVQFMFDCVSGLLNDD---------GISGCILADDMGLGKTLQSITLLYTLLCQG 287
Query: 127 YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKR 186
+ R V++ P S++ WE E KW L G+ V L+ +
Sbjct: 288 FDAKPMVKRAVVVTPTSLVSNWESEIIKW-------------LKGR-----VQLLALCES 329
Query: 187 GRGKV--GLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTP 244
R V G+ ++K S +L +SY F S E G L + DE H
Sbjct: 330 TRADVLSGIESFLKPLSRLQ---VLIVSYETFRMHSSKFERPGSC----DLLICDEAHRL 382
Query: 245 RNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR-------QEFGEVLRTVR 297
+ND T KAL+ + +RRI+LSGTP QN+ +E + ++ F
Sbjct: 383 KNDQTLTNKALAALPCKRRILLSGTPMQNDLEEFFSMVNFTNPGVLGDATYFRRYYEAPI 442
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
GRE + + + S E+ EL K+ F+ +L LP V
Sbjct: 443 ICGREPTASAEEKNLGS----------ERSAELSAKVNLFILRRTNALLSNHLPPKIVEV 492
Query: 358 VILQPDEFQ-------------KRLCKAVEGVKSFVELNYCVSL--LSVHPSLLPQ---- 398
V + Q KRL EG K L Y +L L HP L+
Sbjct: 493 VCCKLTALQTALYNHFIHSKNVKRLIS--EGTKQSKVLAYITALKKLCNHPKLIYDTIKS 550
Query: 399 ------------QFF--ESFDVDSAKLAR-----LKLDPEAGIKTRFLLILLELSTNEKV 439
+FF E F S ++L + + R LL L L T++++
Sbjct: 551 NNSGGSGFDDCLRFFPPELFSGRSGSWTGGGGMWVELSGKMHVLAR-LLGHLRLKTDDRI 609
Query: 440 LVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
++ S Y + L L + R R + +DG + KRQ +N NDPS + L
Sbjct: 610 VLVSNYTQTLDLFAQLCRER-----RYPYIRLDGATSINKRQKLVNQFNDPSRDEFVFLL 664
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
S+KA G+NLVG +R++L D WNP ++QA +R +R GQK+ V++Y +++ T+E
Sbjct: 665 SSKAGGCGLNLVGGNRLILFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSTGTIEEKV 724
Query: 560 LRRQARKVWWSNMV-FPSSDGGGNDQTTASEPLED 593
+RQ K ++ +DG + ++E L D
Sbjct: 725 YQRQMSKEGLQKVIQQEQADGKMQGSSLSTEDLRD 759
>sp|Q9DG67|RA54B_CHICK DNA repair and recombination protein RAD54B OS=Gallus gallus
GN=RAD54B PE=2 SV=1
Length = 918
Score = 149 bits (376), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 149/560 (26%), Positives = 237/560 (42%), Gaps = 111/560 (19%)
Query: 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKT--GLTLVF 123
+ + PHQREG F+++ + G G G I++ G GKT ++LV+
Sbjct: 299 IANNLRPHQREGIVFLYECVMG----------MRVSGRFGAILADEMGLGKTLQCISLVW 348
Query: 124 LQAYMKLHPRCRPV-----IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV 178
++ C+PV I+ P S++ W++EF+KW G E
Sbjct: 349 TLLRQGVY-GCKPVLKRALIVTPGSLVKNWKKEFQKW--------------LGSERIKVF 393
Query: 179 ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVF 238
+ + K V LYS ++ +SY + L S D++ I +L +
Sbjct: 394 TVDQDHK-----VEEFISSPLYS------VMIISYEML--LRSLDQIQAIEFNL---LIC 437
Query: 239 DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK 298
DEGH +N AL+ + RRIIL+GTP QN+ QE + V L T RK
Sbjct: 438 DEGHRLKNSSIKTTTALTNLSCERRIILTGTPIQNDLQEFYALIEFVNPGVLGSLSTYRK 497
Query: 299 SGRE-ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
E I +++ S +++ EL F+ V+ + LP + ++
Sbjct: 498 IYEEPIVRSREPSATKE----EKDLGEKRAAELTRLTGLFILRRTQEVINKFLPPKKENI 553
Query: 358 VILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLLSV---HPSLL-------- 396
+ QP Q L + ++G C+ L HP LL
Sbjct: 554 IFCQPTALQLELYRKLLSSRVISSCLQGRLENSPHLICIGALKKLCNHPCLLFKALKEKC 613
Query: 397 ---------------------PQQFF-ESF-DVDSAKLARLKLDPEAGIKTRFLLILLEL 433
PQ + ++F ++DS KL L + L + EL
Sbjct: 614 CDPKSDEHVESSLYEGLTDVFPQDYTSDTFSEIDSGKLQVL---------VKLLAAIREL 664
Query: 434 STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQ 493
S++E+V++ S Y + L +++E + G +DG V +RQ ++ N S
Sbjct: 665 SSSERVVLVSNYTQTLNVLLETCKCY-----GYSYTRLDGNTPVSQRQQIVDSFNSKFSP 719
Query: 494 ARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553
A I L S+KA G+NLVGAS ++L D+ WNP + QA++R +R GQK VH+Y L+T+
Sbjct: 720 AFIFLLSSKAGGVGLNLVGASHLILYDIDWNPATDIQAMARVWRDGQKCTVHIYRLLTTG 779
Query: 554 TLEWDKLRRQARKVWWSNMV 573
T+E +RQ K S V
Sbjct: 780 TIEEKIYQRQISKQDLSGAV 799
>sp|Q9P793|MIT1_SCHPO Chromatin remodeling factor mit1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mit1 PE=1 SV=1
Length = 1418
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 137/510 (26%), Positives = 232/510 (45%), Gaps = 87/510 (17%)
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNL 164
CI++ G GKT + F+ H +C PV +I P + + WE E KKW PF +
Sbjct: 577 CILADEMGLGKTVQVISFISVLFYRH-KCFPVLVIVPHATVANWERELKKWA---PFLQI 632
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWK----MGTGILGLSYRLFEKLV 220
N L G E N + L+R +L + K + T +L +S E+
Sbjct: 633 NV--LVGSEKNRS---------------LVRDYRLINQKDPKHVSTHVLVISASNVER-- 673
Query: 221 SGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELEN 280
E+S + + + DEG +ND + +F LS +K+ +++L+GTP QNN +EL N
Sbjct: 674 ---EISLLRKFQWKVLIVDEGQRLKNDQSSLFYYLSSVKSDFKLLLTGTPLQNNVRELFN 730
Query: 281 TLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNV 340
L + L ++ + E+ K S+I D EK+ EL + + PF
Sbjct: 731 LL--------QFLNPMKINAAELEK--RYSII----------DTEKVTELHQILKPFFLR 770
Query: 341 HKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV-------------------EGVKSFVE 381
+ + ++ P ++ L QK L K++ G +
Sbjct: 771 RVKSEVLDNFPTKVEVIIPLSMTPVQKGLYKSILSKNLSLLRNITGYANTSSSGGQRTTS 830
Query: 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLA---RLKLDPEAGIKTRFLLILLE--LSTN 436
LN ++L L + S D++ L ++ EA K L +L+ ++
Sbjct: 831 LN---NILMQLRKTLAHPYIYSPDIEDRNLPYELAMRSLEEASCKFLILRLLVPKLITRG 887
Query: 437 EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQA 494
++L+FSQ+I+ L ++ + W E + + Y DG +RQS+I+ N P+S+
Sbjct: 888 HRILLFSQFIQQLDILED-------WFEYKNIAYARFDGASSEMERQSAIDSFNAPNSEL 940
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A V++LD +NP + QAI+RA+R GQK+ V V+ L T ++
Sbjct: 941 SCFLLSTRAGGVGINLASADTVIILDPDFNPHQDMQAIARAHRYGQKKKVLVFVLTTRDS 1000
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGGNDQ 584
+E ++ +K+ +++ S D N +
Sbjct: 1001 VEEKIIQNAQKKLVLDHLIVESLDQNHNSE 1030
>sp|Q6PFE3|RA54B_MOUSE DNA repair and recombination protein RAD54B OS=Mus musculus
GN=Rad54b PE=2 SV=1
Length = 886
Score = 143 bits (360), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 162/584 (27%), Positives = 244/584 (41%), Gaps = 118/584 (20%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ++G F+++ + G G G I++ G GKT + +
Sbjct: 276 PHQKDGIIFLYECVMG----------MRAVGKCGAILADEMGLGKTLQCISLIWTLQCQG 325
Query: 132 PRC-RPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRK 185
P +PVI + P S++ W +EF+KW G E + + K
Sbjct: 326 PYGGKPVIKKTLIVTPGSLVNNWRKEFQKW--------------LGSERIKIFTVDQDHK 371
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPR 245
V+ + +L +SY + L S D++ I GL + DEGH +
Sbjct: 372 -----------VEEFINSTFHSVLIISYEML--LRSLDQIKTIPF---GLLICDEGHRLK 415
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQE-----------LENTLSLVRQEFGEVLR 294
N ALS + + +IL+GTP QN+ QE + +LS R+ + E +
Sbjct: 416 NSSIKTTTALSSLSCEKTVILTGTPVQNDLQEFFALVDFVNPGILGSLSSYRKIYEEPII 475
Query: 295 TVR-----KSGREISKAKHASLISSIGRCANHRDDEKL-KELKEKIAPFVNVHKGTVLQE 348
R K RE+ + + L GR R E + K L KI V G + E
Sbjct: 476 ISREPSSSKEERELGERRATELTRLTGRFILRRTQEVINKYLPPKIENVVFCRPGALQIE 535
Query: 349 -------------SLPGLRHSVVILQPDEFQKRLCK-------AVEGVKSFV-------E 381
L GL + L K+LC +V+G K F E
Sbjct: 536 LYRKLLRSQSVRFCLQGLLENSAHLICIGALKKLCNHPCLLFSSVKG-KEFSSSCEENEE 594
Query: 382 LNYCVSLLSVHPSLL-PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVL 440
N C LLSV P+ P QF E +S KL L + L ++ EL EKV+
Sbjct: 595 RNLCQGLLSVFPAGYNPLQFSEE---ESGKLQVL---------VKLLAVIHELRPTEKVI 642
Query: 441 VFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500
+ S Y + L ++ E + R G +DG+ V +RQ ++ N S I L S
Sbjct: 643 LVSNYRQTLNVLEEVCK-----RHGYACARLDGQTPVSQRQHIVDSFNSKYSTDFIFLLS 697
Query: 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKL 560
+KA G+NL+G S ++L D+ WNP + QA+SR +R GQK VH+Y L+T+ T+E
Sbjct: 698 SKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIY 757
Query: 561 RRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLYN 604
+RQ K S V D T +SE ++ + EE+ L+
Sbjct: 758 QRQISKQGLSGAVV--------DLTRSSEHIQFSV-EELKNLFT 792
>sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila
melanogaster GN=Mi-2 PE=1 SV=2
Length = 1982
Score = 139 bits (349), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 140/539 (25%), Positives = 238/539 (44%), Gaps = 69/539 (12%)
Query: 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-Y 127
++ P+Q EG ++ + GID I++ G GKT T+ FL + Y
Sbjct: 729 QLHPYQIEGINWLRYSWGQGID---------------TILADEMGLGKTIQTVTFLYSLY 773
Query: 128 MKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRG 187
+ H R ++ P S L+ WE EF+ W D FY + G +++ AV +
Sbjct: 774 KEGHCRGPFLVAVPLSTLVNWEREFELWAPD--FYCIT---YIGDKDSRAVIRENELSFE 828
Query: 188 RGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND 247
G + + +L + + +L SY +L+S D +D + V DE H +++
Sbjct: 829 EGAIRGSKVSRLRTTQYKFNVLLTSY----ELISMDAACLGSIDW-AVLVVDEAHRLKSN 883
Query: 248 DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAK 307
+ F+ L+ +++L+GTP QNN +EL + L+ +S+ K
Sbjct: 884 QSKFFRILNSYTIAYKLLLTGTPLQNNLEELFHLLNF------------------LSRDK 925
Query: 308 HASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQK 367
L + G A+ +E++K L E + P + T + +++P +V ++ QK
Sbjct: 926 FNDLQAFQGEFADVSKEEQVKRLHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVELSAMQK 985
Query: 368 RLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKLAR 413
+ K + K++ LN SL+++ HP L P E+
Sbjct: 986 KFYKFI-LTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSAAEEATTAAGGLYEI 1044
Query: 414 LKLDPEAGIKTRFLLILLEL-STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY-- 470
L AG +L +L + N +VL+FSQ + L ++ + L EG++ Y
Sbjct: 1045 NSLTKAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFL-------EGEQYKYER 1097
Query: 471 MDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQ 530
+DG RQ +I+ N P +Q + L ST+A GINL A V++ D WNP + Q
Sbjct: 1098 IDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQ 1157
Query: 531 AISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASE 589
A SRA+R+GQ V +Y +T ++E + RK+ +++V GG T E
Sbjct: 1158 AFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGANFTKQE 1216
>sp|Q9Y620|RA54B_HUMAN DNA repair and recombination protein RAD54B OS=Homo sapiens
GN=RAD54B PE=1 SV=1
Length = 910
Score = 136 bits (342), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 151/586 (25%), Positives = 238/586 (40%), Gaps = 124/586 (21%)
Query: 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131
PHQ+EG F+++ + G G G I++ G GKT + +
Sbjct: 298 PHQKEGIIFLYECVMG----------MRMNGRCGAILADEMGLGKTLQCISLIWTLQCQG 347
Query: 132 PRC-RPVI-----IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRK 185
P +PVI + P S++ W++EF+KW G E + + K
Sbjct: 348 PYGGKPVIKKTLIVTPGSLVNNWKKEFQKW--------------LGSERIKIFTVDQDHK 393
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPR 245
V+ + + +L +SY + L S D++ I DL + DEGH +
Sbjct: 394 -----------VEEFIKSIFYSVLIISYEML--LRSLDQIKNIKFDL---LICDEGHRLK 437
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE--- 302
N AL + +RIIL+GTP QN+ QE + V L + RK E
Sbjct: 438 NSAIKTTTALISLSCEKRIILTGTPIQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPII 497
Query: 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG--------TVLQESLPGLR 354
+S+ AS E+ KEL E+ A + G ++ + LP
Sbjct: 498 LSREPSAS--------------EEEKELGERRAAELTCLTGLFILRRTQEIINKYLPPKI 543
Query: 355 HSVVILQPDEFQKRLCK----------AVEGVKSFVELNYCVSLL---SVHPSLLPQQFF 401
+VV +P Q L + ++G+ C+ L HP LL
Sbjct: 544 ENVVFCRPGALQIELYRKLLNSQVVRFCLQGLLENSPHLICIGALKKLCNHPCLLFNSIK 603
Query: 402 ES---------------------FDVDSAKLARLKLDPEAG---IKTRFLLILLELSTNE 437
E F D L L + E+G + ++ L ++ EL E
Sbjct: 604 EKECSSTCDKNEEKSLYKGLLSVFPADYNPL--LFTEKESGKLQVLSKLLAVIHELRPTE 661
Query: 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497
KV++ S Y + L ++ E + R G +DG+ + +RQ ++ N S I
Sbjct: 662 KVVLVSNYTQTLNILQEVCK-----RHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIF 716
Query: 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557
L S+KA G+NL+G S ++L D+ WNP + QA+SR +R GQK VH+Y L+T+ T+E
Sbjct: 717 LLSSKAGGVGLNLIGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEE 776
Query: 558 DKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEMAQLY 603
+RQ K V D T SE ++ + EE+ L+
Sbjct: 777 KIYQRQISKQGLCGAVV--------DLTKTSEHIQFSV-EELKNLF 813
>sp|O16102|CHD3_DROME Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila
melanogaster GN=Chd3 PE=2 SV=3
Length = 892
Score = 136 bits (342), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 142/522 (27%), Positives = 230/522 (44%), Gaps = 76/522 (14%)
Query: 99 STGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR-PVIIA-PRSMLLTWEEEFKKWG 156
S G G I++ G GKT T+VFL + K CR P +I+ P S L WE E + W
Sbjct: 281 SWGQGIPTILADEMGLGKTIQTVVFLYSLFK-EGHCRGPFLISVPLSTLTNWERELELWA 339
Query: 157 IDIPFYN----------LNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGT 206
++ + K E+S +E + +N+ + + V L Y
Sbjct: 340 PELYCVTYVGGKTARAVIRKHEISFEEVTTKT-MRENQTQYKFNVMLTSY---------- 388
Query: 207 GILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIIL 266
+ +S D +D L V DE H R++ + F+ LS+ + +++L
Sbjct: 389 -----------EFISVDAAFLGCIDWAALVV-DEAHRLRSNQSKFFRILSKYRIGYKLLL 436
Query: 267 SGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEK 326
+GTP QNN +EL + L+ + L+T + ++SK +E+
Sbjct: 437 TGTPLQNNLEELFHLLNFLSSGKFNDLQTFQAEFTDVSK------------------EEQ 478
Query: 327 LKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-- 384
+K L E + P + + +S+P +V ++ QK+ K + K+F LN
Sbjct: 479 VKRLHEILEPHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKFYKHIL-TKNFKALNQKG 537
Query: 385 ---CVSLLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE 432
SLL++ HP L P E+ S L +G +L +
Sbjct: 538 GGRVCSLLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYEMSSLTKASGKLDLLSKMLKQ 597
Query: 433 L-STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPS 491
L + N +VL+FSQ +T ++ L H F EG + +DG RQ +I+ NDP
Sbjct: 598 LKADNHRVLLFSQ----MTKMLNVLEH-FLEGEGYQYDRIDGSIKGDLRQKAIDRFNDPV 652
Query: 492 SQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLIT 551
S+ + L ST+A GINL A V++ D WNP + QA SRA+R+GQK+ V +Y +T
Sbjct: 653 SEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVT 712
Query: 552 SETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLED 593
++E ++ K+ +++V GG + E LED
Sbjct: 713 HNSVEERIMQVAKHKMMLTHLVVRPGMGGMTTNFSKDE-LED 753
>sp|Q8TDI0|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5
PE=2 SV=1
Length = 1954
Score = 135 bits (341), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 149/567 (26%), Positives = 254/567 (44%), Gaps = 80/567 (14%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T+VFL + Y
Sbjct: 700 LHPYQLEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTIVFLYSLYK 744
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKR 186
+ H + ++ AP S ++ WE EF+ W D + Y +K S N + DN R
Sbjct: 745 EGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIREN-EFSFEDNAIR 803
Query: 187 GRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLP-GLFVFDEGHTPR 245
KV R K K +L SY +L++ D+ IL + V DE H +
Sbjct: 804 SGKKV--FRMKKEVQIKFH--VLLTSY----ELITIDQ--AILGSIEWACLVVDEAHRLK 853
Query: 246 NDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305
N+ + F+ L+ K +++L+GTP QNN +EL + L+ + E L + +ISK
Sbjct: 854 NNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 913
Query: 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365
++++K+L + + P + + +++P +V ++ +
Sbjct: 914 ------------------EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQM 955
Query: 366 QKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDVDSAKL 411
QK+ K + ++F LN VSLL++ HP L P V++ L
Sbjct: 956 QKKYYKFIL-TRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAA-----VEAPVL 1009
Query: 412 ARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
D + +K+ L+LL+ +VL+FSQ + L L+ + L + EG
Sbjct: 1010 PNGSYDGSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEY-----EG 1064
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1065 YKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1124
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQT 585
+ QA SRA+R+GQ + V +Y +T ++E + RK+ +++V G +
Sbjct: 1125 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSM 1184
Query: 586 TASEPLEDKILEEMAQLYNNPSETLIN 612
T E L+D + +L+ + E +++
Sbjct: 1185 TKQE-LDDILKFGTEELFKDDVEGMMS 1210
>sp|G5EBZ4|LE418_CAEEL Protein let-418 OS=Caenorhabditis elegans GN=let-418 PE=1 SV=1
Length = 1829
Score = 133 bits (334), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 146/554 (26%), Positives = 238/554 (42%), Gaps = 89/554 (16%)
Query: 69 KMFPHQREGFEFI---WKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQ 125
K+ P+Q EG ++ W N I DE+ G GKT +L FL
Sbjct: 601 KLHPYQLEGLNWLRHCWSNGTDAILADEM------------------GLGKTVQSLTFLY 642
Query: 126 AYMKL-HPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALM 181
+ MK H + +I AP S ++ WE E ++W D + + L + +E+ + +
Sbjct: 643 SLMKEGHCKGPFLIAAPLSTIINWEREAEQWCPDFYVVTYVGLRDARVVLREHE--FSFV 700
Query: 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL--FEKLVSGDELSGILLDLPGLFVFD 239
+ R K ++ + M +L SY +K + LS I G V D
Sbjct: 701 EGAVRSGPKASKMKTTE----NMKFHVLLTSYETINMDKTI----LSSIEW---GALVVD 749
Query: 240 EGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS 299
E H +N+ + FK L+ R++L+GTP QNN +EL + L+ + +E L
Sbjct: 750 EAHRLKNNQSLFFKNLNEYTIHYRVLLTGTPLQNNLEELFHLLNFLSKERFNQLEAFTAE 809
Query: 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI 359
EISK ++++++L + P + + +P +V
Sbjct: 810 FNEISK------------------EDQIEKLHNLLGPHMLRRLKADVLTGMPSKSELIVR 851
Query: 360 LQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFD 405
++ QK+ K + ++F LN +SL++V HP L F +
Sbjct: 852 VELSAMQKKWYKNI-LTRNFDALNVKNGGTQMSLMNVLMELKKCCNHPYL-----FVKAE 905
Query: 406 VDSAKLARLKLDPEAGIKTRFLLILLE------LSTNEKVLVFSQYIEPLTLIMEQLRHR 459
+++ K + A IK +LL+ +VL+FSQ L IME L
Sbjct: 906 LEAPKEKNGMYEGTALIKNSGKFVLLQKMLRKLKDGGHRVLIFSQMTRMLD-IMEDLCE- 963
Query: 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519
EG +DG + RQ +I+ N P +Q I L ST+A GINL A V++
Sbjct: 964 ---YEGYRYERIDGSIMGQMRQDAIDRYNAPGAQQFIFLLSTRAGGLGINLATADTVIIY 1020
Query: 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDG 579
D WNP + QA SRA+RLGQK V +Y +T +++E +K+ +++V + G
Sbjct: 1021 DSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKKSVEEKITSVAKKKMLLNHLVVRAGLG 1080
Query: 580 GGNDQTTASEPLED 593
G +T + L+D
Sbjct: 1081 GKEGKTMSKTELDD 1094
>sp|Q12873|CHD3_HUMAN Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3
PE=1 SV=3
Length = 2000
Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 135/501 (26%), Positives = 225/501 (44%), Gaps = 76/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQA-YMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161
G I++ G GKT T+VFL + Y + H + ++ AP S ++ WE EF+ W F
Sbjct: 754 GTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPK--F 811
Query: 162 YNLNKPELSGKENNGAV------ALMDNRKRGRGKVGLIR---YVKLYSWKMGTGILGLS 212
Y + +G +++ A+ + DN +G K ++ VK + +L S
Sbjct: 812 YVVT---YTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFH-------VLLTS 861
Query: 213 YRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272
Y L + L I V DE H +N+ + F+ L+ K +++L+GTP Q
Sbjct: 862 YELI--TIDQAALGSIRW---ACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQ 916
Query: 273 NNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
NN +EL + L+ + E L + +ISK ++++K+L +
Sbjct: 917 NNLEELFHLLNFLTPERFNNLEGFLEEFADISK------------------EDQIKKLHD 958
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVS 387
+ P + + +++P +V ++ QK+ K + ++F LN VS
Sbjct: 959 LLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYIL-TRNFEALNSRGGGNQVS 1017
Query: 388 LLSV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----- 433
LL++ HP L P ES KL + A IK+ L+LL+
Sbjct: 1018 LLNIMMDLKKCCNHPYLFPVAAMES-----PKLPSGAYEGGALIKSSGKLMLLQKMLRKL 1072
Query: 434 -STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
+VL+FSQ + L L+ + L + EG + +DG RQ +I+ N P +
Sbjct: 1073 KEQGHRVLIFSQMTKMLDLLEDFLDY-----EGYKYERIDGGITGALRQEAIDRFNAPGA 1127
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
Q L ST+A GINL A V++ D WNP + QA SRA+R+GQ V +Y +T
Sbjct: 1128 QQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1187
Query: 553 ETLEWDKLRRQARKVWWSNMV 573
++E + RK+ +++V
Sbjct: 1188 ASVEERITQVAKRKMMLTHLV 1208
>sp|Q22516|CHD3_CAEEL Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis
elegans GN=chd-3 PE=2 SV=2
Length = 1787
Score = 130 bits (326), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 132/517 (25%), Positives = 235/517 (45%), Gaps = 64/517 (12%)
Query: 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAPRSMLLTWEEEFKKWGIDI 159
G I++ G GKT +L FL MK H + +I AP S ++ WE E + W D
Sbjct: 632 SNGTDAILADEMGLGKTVQSLTFLYTLMKEGHTKGPFLIAAPLSTIINWEREAELWCPD- 690
Query: 160 PFYNLNKPELSGKENNGAV-----ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYR 214
FY + + +E+ + + +D RG KV I+ ++ + +L SY
Sbjct: 691 -FYVVTY--VGDRESRMVIREHEFSFVDGAVRGGPKVSKIKTLE----NLKFHVLLTSY- 742
Query: 215 LFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNN 274
+ ++ D+ +D L V DE H +N+ + FK L + R++L+GTP QNN
Sbjct: 743 ---ECINMDKAILSSIDWAALVV-DEAHRLKNNQSTFFKNLREYNIQYRVLLTGTPLQNN 798
Query: 275 FQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKI 334
+EL + L+ + + L + EISK ++++++L +
Sbjct: 799 LEELFHLLNFLAPDRFNQLESFTAEFSEISK------------------EDQIEKLHNLL 840
Query: 335 APFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY-----CVSLL 389
P + + +P + +V ++ QK+ K + ++F LN +SL+
Sbjct: 841 GPHMLRRLKADVLTGMPSKQELIVRVELSAMQKKYYKNI-LTRNFDALNVKNGGTQMSLI 899
Query: 390 SV---------HPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL----STN 436
++ HP L + E+ + + L AG +F+L+ L
Sbjct: 900 NIIMELKKCCNHPYLFMKACLEAPKLKNGMYEGSALIKNAG---KFVLLQKMLRKLKDGG 956
Query: 437 EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI 496
+VL+FSQ +T++++ L F EG + +DG ++RQ +I+ N P ++ +
Sbjct: 957 HRVLIFSQ----MTMMLDILED-FCDVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQFV 1011
Query: 497 MLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556
L ST+A GINL A V++ D WNP + QA SRA+RLGQK V +Y +T ++E
Sbjct: 1012 FLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVE 1071
Query: 557 WDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLED 593
+K+ +++V + G + ++ + L+D
Sbjct: 1072 ERITSVAKKKMLLTHLVVRAGLGAKDGKSMSKTELDD 1108
>sp|A6ZL17|RDH54_YEAS7 DNA repair and recombination protein RDH54 OS=Saccharomyces
cerevisiae (strain YJM789) GN=RDH54 PE=3 SV=1
Length = 924
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 144/568 (25%), Positives = 247/568 (43%), Gaps = 75/568 (13%)
Query: 72 PHQREGFEFIWKNIAG-------GIDLDELKNS---TSTGGGNGCIISHAPGTGKTGLTL 121
PHQREG +F++ + G D+D S + +GC+++ G GKT +++
Sbjct: 264 PHQREGVKFMYDCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLMSI 323
Query: 122 VFL----------------QAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNL 164
+ Q+ + L C+ + ++ P +++ W+ EF KW NL
Sbjct: 324 TLIWTLIRQTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGNWKREFGKW------LNL 377
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
++ G + L K+ + ++K+ + +L + Y EKL+S E
Sbjct: 378 SRI--------GVLTLSSRNSPDMDKMAVRNFLKV---QRTYQVLIIGY---EKLLSVSE 423
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
L + V DEGH +N + + L + RR+++L+GTP QN+ E +
Sbjct: 424 ELEKNKHLIDMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDF 483
Query: 285 VRQE-FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
+ G R+ I++A+ + + + +E+ KE+ E F+
Sbjct: 484 INPGILGSFASFKRRFIIPITRARDTA--NRYNEELLEKGEERSKEMIEITKRFILRRTN 541
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAV-EGVK-SFVELNYCVSL--------LSVHP 393
+L++ LP ++ +P Q K + +G + F +L + SL + P
Sbjct: 542 AILEKYLPPKTDIILFCKPYSQQILAFKDILQGARLDFGQLTFSSSLGLITLLKKVCNSP 601
Query: 394 SLLPQQ-FFESFDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPL 449
L+ +++S D+ +G K R L+ LLE T EKV+V S Y + L
Sbjct: 602 GLVGSDPYYKSHIKDTQSQDSYSRSLNSG-KLRVLMTLLEGIRKGTKEKVVVVSNYTQTL 660
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509
+I E L + G +DG K+R S + N + +L S K+ G+N
Sbjct: 661 DII-ENLMNM----AGMSHCRLDGSIPAKQRDSIVTSFNRNPAIFGFLL-SAKSGGVGLN 714
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
LVGASR++L D WNP V+ QA+SR +R GQK+ +Y L+T+ ++ L+RQ K
Sbjct: 715 LVGASRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSL 774
Query: 570 SNMVFPSSD----GGGNDQTTASEPLED 593
S S+ ND E L+D
Sbjct: 775 SQKFLGDSEMRNKESSNDDLFNKEDLKD 802
>sp|Q6PDQ2|CHD4_MOUSE Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4
PE=1 SV=1
Length = 1915
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 136/529 (25%), Positives = 230/529 (43%), Gaps = 96/529 (18%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 719 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 763
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAV------ALMD 182
+ H + ++ AP S ++ WE EF+ W D+ G +++ A+ + D
Sbjct: 764 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTY-----VGDKDSRAIIRENEFSFED 818
Query: 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFV 237
N RG K R K S K F L++ EL I + + G +
Sbjct: 819 NAIRGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLI 864
Query: 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297
DE H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L
Sbjct: 865 VDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFL 924
Query: 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV 357
+ +I+K ++++K+L + + P + + +++P +
Sbjct: 925 EEFADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELI 966
Query: 358 VILQPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFES 403
V ++ QK+ K + ++F LN VSLL+V HP L P E+
Sbjct: 967 VRVELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEA 1025
Query: 404 FDVDSAKLARLKLDPEAGIKT------RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLR 457
K+ D A I+ ++ +VL+FSQ + L L+ + L
Sbjct: 1026 -----PKMPNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLE 1080
Query: 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517
H EG + +DG RQ +I+ N P +Q L ST+A GINL A V+
Sbjct: 1081 H-----EGYKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVI 1135
Query: 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+ D WNP + QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1136 IYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1183
>sp|B5VE38|RDH54_YEAS6 DNA repair and recombination protein RDH54 OS=Saccharomyces
cerevisiae (strain AWRI1631) GN=RDH54 PE=3 SV=1
Length = 924
Score = 128 bits (321), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 144/568 (25%), Positives = 246/568 (43%), Gaps = 75/568 (13%)
Query: 72 PHQREGFEFIWKNIAG-------GIDLDELKNS---TSTGGGNGCIISHAPGTGKTGLTL 121
PHQREG +F++ + G D+D S + +GC+++ G GKT +++
Sbjct: 264 PHQREGVKFMYDCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLMSI 323
Query: 122 VFL----------------QAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNL 164
+ Q+ + L C+ + ++ P +++ W+ EF KW NL
Sbjct: 324 TLIWTLIRQTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGNWKREFGKW------LNL 377
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
++ G + L K+ + ++K+ I+G +EKL+S E
Sbjct: 378 SRI--------GVLTLSSRNSPDMDKMAVRNFLKVQRI-YQVLIIG-----YEKLLSVSE 423
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
L + V DEGH +N + + L + RR+++L+GTP QN+ E +
Sbjct: 424 ELEKNKHLIDMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDF 483
Query: 285 VRQE-FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
+ G R+ I++A+ + + + +E+ KE+ E F+
Sbjct: 484 INPGILGSFASFKRRFIIPITRARDTA--NRYNEELLEKGEERSKEMIEITKRFILRRTN 541
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAV-EGVK-SFVELNYCVSL--------LSVHP 393
+L++ LP ++ +P Q K + +G + F +L + SL + P
Sbjct: 542 AILEKYLPPKTDIILFCKPYSQQILAFKDILQGARLDFGQLTFSSSLGLITLLKKVCNSP 601
Query: 394 SLLPQQ-FFESFDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPL 449
L+ +++S D+ +G K R L+ LLE T EKV+V S Y + L
Sbjct: 602 GLVGSDPYYKSHIKDTQSQDSYSRSLNSG-KLRVLMTLLEGIRKGTKEKVVVVSNYTQTL 660
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509
+I E L + G +DG K+R S + N + +L S K+ G+N
Sbjct: 661 DII-ENLMNM----AGMSHCRLDGSIPAKQRDSIVTSFNRNPAIFGFLL-SAKSGGVGLN 714
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
LVGASR++L D WNP V+ QA+SR +R GQK+ +Y L+T+ ++ L+RQ K
Sbjct: 715 LVGASRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSL 774
Query: 570 SNMVFPSSD----GGGNDQTTASEPLED 593
S S+ ND E L+D
Sbjct: 775 SQKFLGDSEMRNKESSNDDLFNKEDLKD 802
>sp|Q14839|CHD4_HUMAN Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4
PE=1 SV=2
Length = 1912
Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 136/521 (26%), Positives = 228/521 (43%), Gaps = 80/521 (15%)
Query: 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YM 128
+ P+Q EG ++ + A G D I++ G GKT T VFL + Y
Sbjct: 726 LHPYQMEGLNWLRFSWAQGTD---------------TILADEMGLGKTVQTAVFLYSLYK 770
Query: 129 KLHPRCRPVIIAPRSMLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRK 185
+ H + ++ AP S ++ WE EF+ W D + + +EN + DN
Sbjct: 771 EGHSKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENE--FSFEDNAI 828
Query: 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPG-----LFVFDE 240
RG K R K S K F L++ EL I + + G + DE
Sbjct: 829 RGGKKAS--RMKKEASVK------------FHVLLTSYELITIDMAILGSIDWACLIVDE 874
Query: 241 GHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300
H +N+ + F+ L+ + +++L+GTP QNN +EL + L+ + E L +
Sbjct: 875 AHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTPERFHNLEGFLEEF 934
Query: 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360
+I+K ++++K+L + + P + + +++P +V +
Sbjct: 935 ADIAK------------------EDQIKKLHDMLGPHMLRRLKADVFKNMPSKTELIVRV 976
Query: 361 QPDEFQKRLCKAVEGVKSFVELNY-----CVSLLSV---------HPSLLPQQFFESFDV 406
+ QK+ K + ++F LN VSLL+V HP L P E+ +
Sbjct: 977 ELSPMQKKYYKYI-LTRNFEALNARGGGNQVSLLNVVMDLKKCCNHPYLFPVAAMEAPKM 1035
Query: 407 DSAKLARLKLDPEAGIKTRFLLILLELSTN-EKVLVFSQYIEPLTLIMEQLRHRFNWREG 465
+ L +G +L L +VL+FSQ + L L+ + L H EG
Sbjct: 1036 PNGMYDGSALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEH-----EG 1090
Query: 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525
+ +DG RQ +I+ N P +Q L ST+A GINL A V++ D WNP
Sbjct: 1091 YKYERIDGGITGNMRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNP 1150
Query: 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
+ QA SRA+R+GQ + V +Y +T ++E +++ + A+K
Sbjct: 1151 HNDIQAFSRAHRIGQNKKVMIYRFVTRASVE-ERITQVAKK 1190
>sp|B3LN76|RDH54_YEAS1 DNA repair and recombination protein RDH54 OS=Saccharomyces
cerevisiae (strain RM11-1a) GN=RDH54 PE=3 SV=1
Length = 924
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 144/568 (25%), Positives = 246/568 (43%), Gaps = 75/568 (13%)
Query: 72 PHQREGFEFIWKNIAG-------GIDLDELKNS---TSTGGGNGCIISHAPGTGKTGLTL 121
PHQREG +F++ + G D+D S + +GC+++ G GKT +++
Sbjct: 264 PHQREGVKFMYDCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLMSI 323
Query: 122 VFL----------------QAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNL 164
+ Q+ + L C+ + ++ P +++ W+ EF KW NL
Sbjct: 324 TLIWTLIRQTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGNWKREFGKW------LNL 377
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
++ G + L K+ + ++K+ + +L + Y EKL+S E
Sbjct: 378 SRI--------GVLTLSSRNSPDMDKMAVRNFLKV---QRTYQVLIIGY---EKLLSVSE 423
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
L + V DEGH +N + + L + RR+++L+GTP QN+ E +
Sbjct: 424 ELEKNKHLIDMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDF 483
Query: 285 VRQE-FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
+ G R+ I++A+ + + + +E+ KE+ E F+
Sbjct: 484 INPGILGSFASFKRRFIIPITRARDTA--NRYNEELLEKGEERSKEMIEITKRFILRRTN 541
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAV-EGVK-SFVELNYCVSL--------LSVHP 393
+L++ LP ++ +P Q K + +G + F L + SL + P
Sbjct: 542 AILEKYLPPKTDIILFCKPYSQQILAFKDILQGARLDFGRLTFSSSLGLITLLKKVCNSP 601
Query: 394 SLLPQQ-FFESFDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPL 449
L+ +++S D+ +G K R L+ LLE T EKV+V S Y + L
Sbjct: 602 GLVGSDPYYKSHIKDTQSQDSYSRSLNSG-KLRVLMTLLEGIRKGTKEKVVVVSNYTQTL 660
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509
+I E L + G +DG K+R S + N + +L S K+ G+N
Sbjct: 661 DII-ENLMNM----AGMSHCRLDGSIPAKQRDSIVTSFNRNPAIFGFLL-SAKSGGVGLN 714
Query: 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569
LVGASR++L D WNP V+ QA+SR +R GQK+ +Y L+T+ ++ L+RQ K
Sbjct: 715 LVGASRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSL 774
Query: 570 SNMVFPSSD----GGGNDQTTASEPLED 593
S S+ ND E L+D
Sbjct: 775 SQKFLGDSEMRNKESSNDDLFNKEDLKD 802
>sp|C7GQI8|RDH54_YEAS2 DNA repair and recombination protein RDH54 OS=Saccharomyces
cerevisiae (strain JAY291) GN=RDH54 PE=3 SV=1
Length = 924
Score = 127 bits (318), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 146/576 (25%), Positives = 250/576 (43%), Gaps = 91/576 (15%)
Query: 72 PHQREGFEFIWKNIAG-------GIDLDELKNS---TSTGGGNGCIISHAPGTGKTGLTL 121
PHQREG +F++ + G D+D S + +GC+++ G GKT +++
Sbjct: 264 PHQREGVKFMYDCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLMSI 323
Query: 122 VFL----------------QAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNL 164
+ Q+ + L C+ + ++ P +++ W+ EF KW NL
Sbjct: 324 TLIWTLIRQTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGNWKREFGKW------LNL 377
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
++ G + L K+ + ++K+ + +L + Y EKL+S E
Sbjct: 378 SRI--------GVLTLSSRNSPDMDKMAVRNFLKV---QRTYQVLIIGY---EKLLSVSE 423
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
L + V DEGH +N + + L + RR+++L+GTP QN+ E +
Sbjct: 424 ELEKNKHLIDMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDF 483
Query: 285 VRQE-FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHK- 342
+ G R+ I++A+ AN ++E LK+ +E+ + + K
Sbjct: 484 INPGILGSFASFKRRFIIPITRARDT---------ANRYNEELLKKGEERSKEMIEITKR 534
Query: 343 ------GTVLQESLPGLRHSVVILQPDEFQKRLCKAV-EGVK-SFVELNYCVSL------ 388
+L++ LP ++ +P Q K + +G + F +L + SL
Sbjct: 535 FILRRTNAILEKYLPPKTDIILFCKPYSQQILAFKDILQGARLDFGQLTFSSSLGLITLL 594
Query: 389 --LSVHPSLLPQQ-FFESFDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVF 442
+ P L+ +++S D+ +G K + L+ LLE T EKV+V
Sbjct: 595 KKVCNSPGLVGSDPYYKSHIKDTQSQDSYSRSLNSG-KLKVLMTLLEGIRKGTKEKVVVV 653
Query: 443 SQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLAST 501
S Y + L +I E L + G +DG K+R S + N +P+ L S
Sbjct: 654 SNYTQTLDII-ENLMNM----AGMSHCRLDGSIPAKQRDSIVTSFNRNPAIFG--FLLSA 706
Query: 502 KACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561
K+ G+NLVGASR++L D WNP V+ QA+SR +R GQK+ +Y L+T+ ++ L+
Sbjct: 707 KSGGVGLNLVGASRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQ 766
Query: 562 RQARKVWWSNMVFPSSD----GGGNDQTTASEPLED 593
RQ K S S+ ND E L+D
Sbjct: 767 RQLMKNSLSQKFLGDSEMRNKESSNDDLFNKEDLKD 802
>sp|A9X4T1|CHD1_BOMMO Chromodomain-helicase-DNA-binding protein 1 OS=Bombyx mori GN=CHD1
PE=1 SV=1
Length = 1365
Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 128/502 (25%), Positives = 217/502 (43%), Gaps = 79/502 (15%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVI-IAPRSMLLTWEEEFKKWGIDIPFY 162
N I++ G GKT T+ FL K P + + P S + W+ EF++W DI
Sbjct: 224 NSVILADEMGLGKTIQTICFLYYLFKSQHLYGPFLCVVPLSTMTAWQREFQQWAPDI--- 280
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL-FEKLVS 221
V + G V ++ + W + S RL F +++
Sbjct: 281 -------------NVVTYI-------GDVSSRDIIRQFEWSFSS-----SKRLKFNAILT 315
Query: 222 GDELSGILLDLPGLFVF-------DEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNN 274
E+ +L D L F DE H +NDD+ ++KAL T R++++GTP QN+
Sbjct: 316 TYEI--LLKDRQFLRSFSWACLLVDEAHRLKNDDSLLYKALKEFDTNHRLLVTGTPLQNS 373
Query: 275 FQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKI 334
+EL L + E K + + + ++L +++
Sbjct: 374 LKELWALLHFIMPYKFESWEDFEKDHEDAATKGY-------------------EKLHKQL 414
Query: 335 APFVNVHKGTVLQESLPGLRHSVVILQPDEFQKR------------LCKAVEG-VKSFVE 381
PF+ + +++SLP ++ ++ QK+ L K V+G + +F+
Sbjct: 415 EPFILRRQKKDVEKSLPAKVEQILRVEMTSIQKQYYKWILTKNYSALRKGVKGSINTFIN 474
Query: 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL-STNEKVL 440
+ + H L + FES + A KL +G +L L T +VL
Sbjct: 475 IVIELKKCCNHALLTKPEDFESRASLATSDAVEKLLRGSGKLLLLDKLLCRLKETGHRVL 534
Query: 441 VFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
+FSQ + L ++ E L+ R F ++ +DG + R+ +++ N SQ L
Sbjct: 535 IFSQMVRMLDILAEYLQRRHFPFQR------LDGSIKGELRKQALDHFNAEGSQDFCFLL 588
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
ST+A GINL A V++ D WNP + QA +RA+R+GQK V++Y L+T+ ++E D
Sbjct: 589 STRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEDI 648
Query: 560 LRRQARKVWWSNMVFPSSDGGG 581
+ R RK+ ++V D G
Sbjct: 649 VERAKRKMVLDHLVIQRMDTTG 670
>sp|P38086|RDH54_YEAST DNA repair and recombination protein RDH54 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RDH54 PE=1
SV=4
Length = 958
Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 144/569 (25%), Positives = 248/569 (43%), Gaps = 77/569 (13%)
Query: 72 PHQREGFEFIWKNIAG-------GIDLDELKNS---TSTGGGNGCIISHAPGTGKTGLTL 121
PHQREG +F++ + G D+D S + +GC+++ G GKT +++
Sbjct: 298 PHQREGVKFMYDCLMGLARPTIENPDIDCTTKSLVLENDSDISGCLLADDMGLGKTLMSI 357
Query: 122 VFL----------------QAYMKLHPRCRPV-IIAPRSMLLTWEEEFKKWGIDIPFYNL 164
+ Q+ + L C+ + ++ P +++ W+ EF KW NL
Sbjct: 358 TLIWTLIRQTPFASKVSCSQSGIPLTGLCKKILVVCPVTLIGNWKREFGKW------LNL 411
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224
++ G + L K+ + ++K+ + +L + Y EKL+S E
Sbjct: 412 SRI--------GVLTLSSRNSPDMDKMAVRNFLKV---QRTYQVLIIGY---EKLLSVSE 457
Query: 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284
L + V DEGH +N + + L + RR+++L+GTP QN+ E +
Sbjct: 458 ELEKNKHLIDMLVCDEGHRLKNGASKILNTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDF 517
Query: 285 VRQE-FGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
+ G R+ I++A+ + + + +E+ KE+ E F+
Sbjct: 518 INPGILGSFASFKRRFIIPITRARDTA--NRYNEELLEKGEERSKEMIEITKRFILRRTN 575
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAV-EGVK-SFVELNYCVSL--------LSVHP 393
+L++ LP ++ +P Q K + +G + F +L + SL + P
Sbjct: 576 AILEKYLPPKTDIILFCKPYSQQILAFKDILQGARLDFGQLTFSSSLGLITLLKKVCNSP 635
Query: 394 SLLPQQ-FFESFDVDSAKLARLKLDPEAGIKTRFLLILLE---LSTNEKVLVFSQYIEPL 449
L+ +++S D+ +G K + L+ LLE T EKV+V S Y + L
Sbjct: 636 GLVGSDPYYKSHIKDTQSQDSYSRSLNSG-KLKVLMTLLEGIRKGTKEKVVVVSNYTQTL 694
Query: 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN-DPSSQARIMLASTKACCEGI 508
+I E L + G +DG K+R S + N +P+ L S K+ G+
Sbjct: 695 DII-ENLMNM----AGMSHCRLDGSIPAKQRDSIVTSFNRNPAIFG--FLLSAKSGGVGL 747
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568
NLVGASR++L D WNP V+ QA+SR +R GQK+ +Y L+T+ ++ L+RQ K
Sbjct: 748 NLVGASRLILFDNDWNPSVDLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNS 807
Query: 569 WSNMVFPSSD----GGGNDQTTASEPLED 593
S S+ ND E L+D
Sbjct: 808 LSQKFLGDSEMRNKESSNDDLFNKEDLKD 836
>sp|B6ZLK2|CHD1_CHICK Chromodomain-helicase-DNA-binding protein 1 OS=Gallus gallus
GN=CHD1 PE=1 SV=1
Length = 1719
Score = 125 bits (315), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 132/501 (26%), Positives = 216/501 (43%), Gaps = 77/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W
Sbjct: 495 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWA----- 549
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
P++ N V L D R + ++ + ++ IL +Y + K S
Sbjct: 550 -----PQM-----NAVVYLGD--ITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKS 597
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+ +EL +
Sbjct: 598 F--LGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSL 652
Query: 282 LSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
L + E F E GRE A L +++ PF+
Sbjct: 653 LHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHKELEPFL 690
Query: 339 NVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-----FVE 381
+++SLP LR + LQ ++ K L K +G S +E
Sbjct: 691 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 750
Query: 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLV 441
L C + H L+ F L L + + L++ +VL+
Sbjct: 751 LKKCCN----HCYLIKPPDDNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRERGNRVLI 805
Query: 442 FSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500
FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+ L S
Sbjct: 806 FSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSEDFCFLLS 859
Query: 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKL 560
T+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T ++E D L
Sbjct: 860 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL 919
Query: 561 RRQARKVWWSNMVFPSSDGGG 581
R +K+ ++V D G
Sbjct: 920 ERAKKKMVLDHLVIQRMDTTG 940
>sp|Q7KU24|CHD1_DROME Chromodomain-helicase-DNA-binding protein 1 OS=Drosophila
melanogaster GN=Chd1 PE=1 SV=1
Length = 1883
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 124/502 (24%), Positives = 216/502 (43%), Gaps = 80/502 (15%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVI-IAPRSMLLTWEEEFKKWGIDIPFY 162
N I++ G GKT T+ FL + K+H P + + P S + W+ EF W D+
Sbjct: 547 NSVILADEMGLGKTIQTICFLYSLFKIHHLYGPFLCVVPLSTMTAWQREFDLWAPDM--- 603
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGI---LGLSYRLFEKL 219
N L D + R ++ Y W+ + +E +
Sbjct: 604 ------------NVVTYLGDIKSR--------ELIQQYEWQFESSKRLKFNCILTTYEIV 643
Query: 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279
+ + G L L V DE H +NDD+ ++K+L T R++++GTP QN+ +EL
Sbjct: 644 LKDKQFLGTL-QWAALLV-DEAHRLKNDDSLLYKSLKEFDTNHRLLITGTPLQNSLKELW 701
Query: 280 NTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVN 339
L + + + E + +H + +D+ L +++ P++
Sbjct: 702 ALLHFIMPDKFDTW--------ENFEVQHGNA-----------EDKGYTRLHQQLEPYIL 742
Query: 340 VHKGTVLQESLPG-----LRHSVVILQPDEFQKRLCKAVEGVKS------------FVEL 382
+++SLP LR + LQ ++ L K + ++ +EL
Sbjct: 743 RRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNFDALRKGKRGSTSTFLNIVIEL 802
Query: 383 NYCVSLLSVHPSLLPQQFFE--SFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVL 440
C + H +L+ FE D A LK + + + L L E T +VL
Sbjct: 803 KKCCN----HAALIRPSEFELMGLQQDEALQTLLKGSGKLVLLDKLLCRLKE--TGHRVL 856
Query: 441 VFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499
+FSQ + L ++ + L+ R F ++ +DG + R+ +++ N SQ L
Sbjct: 857 IFSQMVRMLDVLADYLQKRHFPFQR------LDGSIKGEMRRQALDHFNAEGSQDFCFLL 910
Query: 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDK 559
ST+A GINL A V++ D WNP + QA +RA+R+GQK V++Y L+T+ ++E
Sbjct: 911 STRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQI 970
Query: 560 LRRQARKVWWSNMVFPSSDGGG 581
+ R +K+ ++V D G
Sbjct: 971 VERAKQKMVLDHLVIQRMDTTG 992
>sp|O14646|CHD1_HUMAN Chromodomain-helicase-DNA-binding protein 1 OS=Homo sapiens GN=CHD1
PE=1 SV=2
Length = 1710
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 130/501 (25%), Positives = 212/501 (42%), Gaps = 77/501 (15%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 499 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 556
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221
N V L D R + + + ++ IL +Y + L
Sbjct: 557 -------------NAVVYLGD--INSRNMIRTHEWTHHQTKRLKFNILLTTYEIL--LKD 599
Query: 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281
L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+ +EL +
Sbjct: 600 KAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSL 656
Query: 282 LSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
L + E F E GRE A L +++ PF+
Sbjct: 657 LHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHKELEPFL 694
Query: 339 NVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-----FVE 381
+++SLP LR + LQ ++ K L K +G S +E
Sbjct: 695 LRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGFLNIMME 754
Query: 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLV 441
L C + H L+ F L L + + L++ +VL+
Sbjct: 755 LKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRERGNRVLI 809
Query: 442 FSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500
FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+ L S
Sbjct: 810 FSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSEDFCFLLS 863
Query: 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKL 560
T+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T ++E D L
Sbjct: 864 TRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDIL 923
Query: 561 RRQARKVWWSNMVFPSSDGGG 581
R +K+ ++V D G
Sbjct: 924 ERAKKKMVLDHLVIQRMDTTG 944
>sp|P40201|CHD1_MOUSE Chromodomain-helicase-DNA-binding protein 1 OS=Mus musculus GN=Chd1
PE=1 SV=3
Length = 1711
Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 130/507 (25%), Positives = 213/507 (42%), Gaps = 89/507 (17%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
GN CI++ G GKT T+ FL H P +++ P S L +W+ E + W +
Sbjct: 497 GNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM-- 554
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW------KMGTGILGLSYRL 215
N V L G + ++ + W ++ IL +Y +
Sbjct: 555 -------------NAVVYL--------GDINSRNMIRTHEWMHPQTKRLKFNILLTTYEI 593
Query: 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275
L L G+ G+ DE H +NDD+ ++K L K+ R++++GTP QN+
Sbjct: 594 L--LKDKAFLGGLNWAFIGV---DEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSL 648
Query: 276 QELENTLSLVRQE-FG--EVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKE 332
+EL + L + E F E GRE A L +
Sbjct: 649 KELWSLLHFIMPEKFSSWEDFEEEHGKGREYGYA----------------------SLHK 686
Query: 333 KIAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS-- 378
++ PF+ +++SLP LR + LQ ++ K L K +G S
Sbjct: 687 ELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKGSKGSTSGF 746
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
+EL C + H L+ F L L + + L++
Sbjct: 747 LNIMMELKKCCN----HCYLIKPPDNNEFYNKQEALQHL-IRSSGKLILLDKLLIRLRER 801
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHR-FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L++R F ++ +DG + R+ +++ N S+
Sbjct: 802 GNRVLIFSQMVRMLDILAEYLKYRQFPFQR------LDGSIKGELRKQALDHFNAEGSED 855
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T +
Sbjct: 856 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 915
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E D L R +K+ ++V D G
Sbjct: 916 VEEDILERAKKKMVLDHLVIQRMDTTG 942
>sp|P32657|CHD1_YEAST Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CHD1 PE=1 SV=1
Length = 1468
Score = 122 bits (306), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 123/515 (23%), Positives = 222/515 (43%), Gaps = 75/515 (14%)
Query: 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPF 161
G+ I++ G GKT T+ F+ + + P +I+ P S + W + F+KW D+
Sbjct: 394 GDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDL-- 451
Query: 162 YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL----FE 217
+ M N+K IR + Y+ G + + + +E
Sbjct: 452 --------------NCICYMGNQK----SRDTIREYEFYTNPRAKGKKTMKFNVLLTTYE 493
Query: 218 KLVSG-DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQ 276
++ EL I DE H +N ++ ++++L+ K R++++GTP QNN +
Sbjct: 494 YILKDRAELGSIKWQF---MAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIK 550
Query: 277 ELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP 336
EL ++ + + + + ++ +E + +L +I P
Sbjct: 551 ELAALVNFLMPGRFTIDQEIDFENQD------------------EEQEEYIHDLHRRIQP 592
Query: 337 FVNVHKGTVLQESLPG-----LRHSVVILQPDEFQKRLCKAVEGVKS------FVELNYC 385
F+ +++SLP LR + +Q + ++ L K + + F LN
Sbjct: 593 FILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIM 652
Query: 386 VSL--LSVHPSLL---PQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST----- 435
L S HP L ++ + F K+ R + + + +++L +L T
Sbjct: 653 NELKKASNHPYLFDNAEERVLQKFG--DGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKD 710
Query: 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495
+VL+FSQ + L ++ + L + G +DG +R+ SI+ N P S
Sbjct: 711 GHRVLIFSQMVRMLDILGDYLSIK-----GINFQRLDGTVPSAQRRISIDHFNSPDSNDF 765
Query: 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555
+ L ST+A GINL+ A VV+ D WNP + QA++RA+R+GQK V VY L++ +T+
Sbjct: 766 VFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTV 825
Query: 556 EWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEP 590
E + L R +K+ + GN T +EP
Sbjct: 826 EEEVLERARKKMILEYAIISLGVTDGNKYTKKNEP 860
>sp|Q9US25|HRP1_SCHPO Chromodomain helicase hrp1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=hrp1 PE=1 SV=1
Length = 1373
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 126/495 (25%), Positives = 209/495 (42%), Gaps = 89/495 (17%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFY 162
NG I++ G GKT T+ FL + + P +I+ P S + W+E W D+
Sbjct: 410 NG-ILADEMGLGKTVQTVCFLSYLVHSLKQHGPFLIVVPLSTVPAWQETLANWTPDL--- 465
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222
++ N + Y+ S K+ IL +Y L
Sbjct: 466 -------------NSICYTGNTESRANIREYEFYLSTNSRKLKFNILLTTYEYI--LKDK 510
Query: 223 DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282
EL+ I DE H +N ++ +++ LS+ +T R++++GTP QNN +EL + +
Sbjct: 511 QELNNIRWQY---LAIDEAHRLKNSESSLYETLSQFRTANRLLITGTPLQNNLKELASLV 567
Query: 283 SL-------VRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIA 335
+ +R E N + +++L+E++
Sbjct: 568 NFLMPGKFYIRDELN-------------------------FDQPNAEQERDIRDLQERLQ 602
Query: 336 PFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQKRLCKAVEGVKSFVE-------LN 383
PF+ +++SLP LR + +Q + ++ L K + + LN
Sbjct: 603 PFILRRLKKDVEKSLPSKSERILRVELSDMQTEWYKNILTKNYRALTGHTDGRGQLSLLN 662
Query: 384 YCVSL--LSVHPSLLPQQFFESFDVDSAKLAR--LKLDPEAGI-----KTRFLLILLELS 434
V L +S HP L P + + R + D GI K L LL+
Sbjct: 663 IVVELKKVSNHPYLFPGA------AEKWMMGRKMTREDTLRGIIMNSGKMVLLDKLLQRL 716
Query: 435 TNE--KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492
++ +VL+FSQ + L ++ E + R G +DG R+ SI+ N P S
Sbjct: 717 KHDGHRVLIFSQMVRMLNILGEYMSLR-----GYNYQRLDGTIPASVRRVSIDHFNAPDS 771
Query: 493 QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552
+ L ST+A GINL A V++ D WNP + QA++RA+R+GQK V+VY ++
Sbjct: 772 PDFVFLLSTRAGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVNVYRFLSK 831
Query: 553 ETLEWDKLRRQARKV 567
+T+E D L R RK+
Sbjct: 832 DTVEEDILERARRKM 846
>sp|P75093|Y020_MYCPN Uncharacterized ATP-dependent helicase MPN_020 OS=Mycoplasma
pneumoniae (strain ATCC 29342 / M129) GN=MPN_020 PE=3
SV=1
Length = 1030
Score = 119 bits (299), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 125/478 (26%), Positives = 208/478 (43%), Gaps = 89/478 (18%)
Query: 105 GCIISHAPGTGKT-GLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYN 163
G I++ G GKT + L +Y+K H +II P S+LL W+ EF+K+
Sbjct: 598 GGILADEMGLGKTVQVIFALLDSYLKNHVNLPSLIIVPASLLLNWKSEFEKFA------- 650
Query: 164 LNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFE---KLV 220
P++ K VA + +++RG +LY K+ IL +S+ + KL+
Sbjct: 651 ---PQIKVK-----VANIPSKERG----------ELYE-KLTNEILIVSFNVLRSDVKLI 691
Query: 221 SGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELEN 280
+ + V DE +ND + + KA ++K + L+GTP +N +L +
Sbjct: 692 TKQRFHYV--------VIDEAQGIKNDSSSITKAAKKVKGNFCLALTGTPIENRLLDLWS 743
Query: 281 TLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV-N 339
V F L ++ + K K D+ L ++ +PF+
Sbjct: 744 CFDFVLPSF---LGNKKQFTDQFEKEK---------------TDQSFHLLMQRTSPFILR 785
Query: 340 VHKGTVLQESLPGLRHSVVILQPDEFQKRL-----------CKAVEGVKSFVELNYCVSL 388
K VL+E LP + + ++ + ++L K ++ SF L + L
Sbjct: 786 RTKSKVLKE-LPNKITTDIYVELNPMHQKLYEEERDRGLEEIKQIQDKSSFNILTLILKL 844
Query: 389 LSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEP 448
H LP+ + + K A L++ EA + K+++F+Q+I+
Sbjct: 845 R--HLCSLPKNSQGILENSAKKEAALEIIHEA------------IENQRKIILFTQFID- 889
Query: 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGI 508
+++ + F +G E DG++ K R S I N+ + ++LAS KA GI
Sbjct: 890 ---VIDHFKDTFK-EQGIEYFIFDGRKSPKSRHSIIEKFNNAKNPC-VLLASLKAGGVGI 944
Query: 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566
NL A V+ DV WN VE QA RA+R+GQK+ V VY +I T+E + QA K
Sbjct: 945 NLTAAEVVIHFDVWWNTAVENQATDRAHRIGQKKTVQVYRIIAKNTIEERVCQVQAEK 1002
>sp|Q91ZW3|SMCA5_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A member 5 OS=Mus musculus
GN=Smarca5 PE=1 SV=1
Length = 1051
Score = 119 bits (298), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 132/482 (27%), Positives = 203/482 (42%), Gaps = 82/482 (17%)
Query: 97 STSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP---VIIAPRSMLLTWEEEFK 153
S G NG I++ G GKT L + L YMK H R P +++ P+S L W EFK
Sbjct: 192 SLYENGING-ILADEMGLGKT-LQTISLLGYMK-HYRNIPGPHMVLVPKSTLHNWMSEFK 248
Query: 154 KWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSY 213
KW +P L L G + A + D G V + Y L K Y
Sbjct: 249 KW---VP--TLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRY 303
Query: 214 RLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQN 273
V DE H +N+ + + + + KT R++L+GTP QN
Sbjct: 304 ----------------------LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQN 341
Query: 274 NFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKE-LKE 332
N EL + L+ + +V + A S N D+KL E L
Sbjct: 342 NLHELWSLLNFL---LPDVFNS-------------ADDFDSWFDTNNCLGDQKLVERLHM 385
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVI-----LQPDEFQKRLCKAVEGVKS--------- 378
+ PF+ +++SLP + + +Q + + + L K ++ + S
Sbjct: 386 VLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRL 445
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
++L C + HP L F+ + + L +G +L +L
Sbjct: 446 LNILMQLRKCCN----HPYL-----FDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKE 496
Query: 436 N-EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ +T +++ L WR E +DG+ +RQ SIN N+P+S
Sbjct: 497 QGSRVLIFSQ----MTRVLDILEDYCMWR-NYEYCRLDGQTPHDERQDSINAYNEPNSTK 551
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
+ + ST+A GINL A V+L D WNP V+ QA+ RA+R+GQ + V V+ IT T
Sbjct: 552 FVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNT 611
Query: 555 LE 556
+E
Sbjct: 612 VE 613
>sp|Q9UR24|RHP26_SCHPO DNA repair protein rhp26 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp26 PE=4 SV=1
Length = 973
Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 138/565 (24%), Positives = 234/565 (41%), Gaps = 84/565 (14%)
Query: 50 PFTHAQGTVWE---LVPRDVRKKMFPHQREGFEFIWK---NIAGGIDLDELKNSTSTGGG 103
P +G +E +P D+R +F +Q +++W+ AGGI DE+
Sbjct: 254 PHPSKKGQTFEGGFTIPGDIRPHLFRYQVTCVQWLWELYCQEAGGIIGDEM--------- 304
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFY 162
G GKT + FL + +P +I+ P +++ W EF W +
Sbjct: 305 ---------GLGKTIQIVSFLSSLHHSGKFQKPALIVCPATLMKQWVNEFHTWWAPLRVV 355
Query: 163 NLNKP--------ELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYR 214
L+ E E++ + + + K G Y+ + + +
Sbjct: 356 VLHATGSGQRASREKRQYESDASESEAEESKTSIKLRGASSSFHRYAKNLVESVFTRGHI 415
Query: 215 LFEKLVSGDELSGILLDLP---GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPF 271
L +G + G L+ LP G V DEGH RN D+ + + +I+T RIILSGTP
Sbjct: 416 LI-TTYAGLRIYGDLI-LPREWGYCVLDEGHKIRNPDSEISISCKQIRTVNRIILSGTPI 473
Query: 272 QNNFQELENTLSLV-RQEFGEVLRTVRKSGREISKAKHASL----ISSIGRCANHRDDEK 326
QNN EL N V G + + I+ +A+ + + +CA
Sbjct: 474 QNNLTELWNLFDFVFPGRLGTLPVFQNQFALPINIGGYANASNVQVQTAYKCACM----- 528
Query: 327 LKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKR----------LCKAVEGV 376
L++ I+P++ + LP V+ + Q++ + K + G
Sbjct: 529 ---LRDLISPYLLRRMKLDVAADLPKKSEQVLFCKLTPLQRKAYQDFLQGSDMQKILNGK 585
Query: 377 KSFVELNYCVSLLSVHPSLLPQQFF---ESFDVDSAKLARLKLDPEAGIKTRFLLILLEL 433
+ + + + HP L+ +++ E ++ DPE K + + LL L
Sbjct: 586 RQMLYGIDILRKICNHPDLVTREYLLHKEDYNYG---------DPEKSGKLKVIRALLTL 636
Query: 434 --STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLND 489
+ L+FSQ + L ++ ++ +V Y MDG + RQ ++ N
Sbjct: 637 WKKQGHRTLLFSQTRQMLDIL------EIGLKDLPDVHYCRMDGSTSIALRQDLVDNFN- 689
Query: 490 PSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHL 549
+ + L +T+ G+NL GA RV+L D WNP + QA RA+RLGQK+ V VY L
Sbjct: 690 KNEYFDVFLLTTRVGGLGVNLTGADRVILFDPDWNPSTDAQARERAWRLGQKKDVVVYRL 749
Query: 550 ITSETLEWDKLRRQARKVWWSNMVF 574
+T+ T+E RQ K + +N +
Sbjct: 750 MTAGTIEEKIYHRQIFKQFLTNKIL 774
>sp|O60264|SMCA5_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A member 5 OS=Homo sapiens
GN=SMARCA5 PE=1 SV=1
Length = 1052
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 134/500 (26%), Positives = 210/500 (42%), Gaps = 82/500 (16%)
Query: 97 STSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP---VIIAPRSMLLTWEEEFK 153
S G NG I++ G GKT L + L YMK H R P +++ P+S L W EFK
Sbjct: 193 SLYENGING-ILADEMGLGKT-LQTISLLGYMK-HYRNIPGPHMVLVPKSTLHNWMSEFK 249
Query: 154 KWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSY 213
+W +P L L G + A + D G V + Y L K Y
Sbjct: 250 RW---VP--TLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRY 304
Query: 214 RLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQN 273
V DE H +N+ + + + + KT R++L+GTP QN
Sbjct: 305 ----------------------LVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQN 342
Query: 274 NFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKE-LKE 332
N EL + L+ + +V + A S N D+KL E L
Sbjct: 343 NLHELWSLLNFL---LPDVFNS-------------ADDFDSWFDTNNCLGDQKLVERLHM 386
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVI-----LQPDEFQKRLCKAVEGVKS--------- 378
+ PF+ +++SLP + + +Q + + + L K ++ + S
Sbjct: 387 VLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRL 446
Query: 379 ---FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELST 435
++L C + HP L F+ + + L +G +L +L
Sbjct: 447 LNILMQLRKCCN----HPYL-----FDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKE 497
Query: 436 N-EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ +T +++ L WR E +DG+ +RQ SIN N+P+S
Sbjct: 498 QGSRVLIFSQ----MTRVLDILEDYCMWR-NYEYCRLDGQTPHDERQDSINAYNEPNSTK 552
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
+ + ST+A GINL A V+L D WNP V+ QA+ RA+R+GQ + V V+ IT T
Sbjct: 553 FVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNT 612
Query: 555 LEWDKLRRQARKVWWSNMVF 574
+E + R K+ ++V
Sbjct: 613 VEERIVERAEMKLRLDSIVI 632
>sp|O14647|CHD2_HUMAN Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens GN=CHD2
PE=1 SV=2
Length = 1828
Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 131/507 (25%), Positives = 216/507 (42%), Gaps = 91/507 (17%)
Query: 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAPRSMLLTWEEEFKKWGIDIPFY 162
N I++ G GKT T+ FL H P +I+ P S L +W+ EF+ W +I
Sbjct: 503 NSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEI--- 559
Query: 163 NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL-FEKLVS 221
N V + D R ++ Y W I + RL F L++
Sbjct: 560 ------------NVVVYIGDLMSRN--------TIREYEW-----IHSQTKRLKFNALIT 594
Query: 222 GDEL----SGILLDLPGLFV-FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQ 276
E+ +L + F+ DE H +NDD+ ++K L K+ R++++GTP QN+ +
Sbjct: 595 TYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLK 654
Query: 277 ELENTLSLV---RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEK 333
EL + L + + EF E GRE + L +
Sbjct: 655 ELWSLLHFIMPEKFEFWEDFEEDHGKGRENG----------------------YQSLHKV 692
Query: 334 IAPFVNVHKGTVLQESLPG-----LRHSVVILQPDEFQ-------KRLCKAVEGVKS--- 378
+ PF+ +++SLP LR + LQ ++ K L K G S
Sbjct: 693 LEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGTRGSTSGFL 752
Query: 379 --FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTN 436
+EL C + + + P + E + L+ ++ + + + L L E
Sbjct: 753 NIVMELKKCCNHCYL---IKPPEENERENGQEILLSLIRSSGKLILLDKLLTRLRERGN- 808
Query: 437 EKVLVFSQYIEPLTLIMEQL--RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494
+VL+FSQ + L ++ E L +H R +DG + R+ +++ N S+
Sbjct: 809 -RVLIFSQMVRMLDILAEYLTIKHYPFQR-------LDGSIKGEIRKQALDHFNADGSED 860
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
L ST+A GINL A VV+ D WNP + QA +RA+R+GQK+ V++Y L+T T
Sbjct: 861 FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGT 920
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDGGG 581
+E + + R +K+ ++V D G
Sbjct: 921 VEEEIIERAKKKMVLDHLVIQRMDTTG 947
>sp|Q6PGB8|SMCA1_MOUSE Probable global transcription activator SNF2L1 OS=Mus musculus
GN=Smarca1 PE=1 SV=1
Length = 1046
Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 133/488 (27%), Positives = 208/488 (42%), Gaps = 94/488 (19%)
Query: 97 STSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP---VIIAPRSMLLTWEEEFK 153
S G NG I++ G GKT T+ L Y+K H R P +++ P+S L W EFK
Sbjct: 200 SLYENGVNG-ILADEMGLGKTLQTIALL-GYLK-HYRNIPGPHMVLVPKSTLHNWMNEFK 256
Query: 154 KWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSY 213
+W +P +L G ++ A + D G V + Y + K Y
Sbjct: 257 RW---VP--SLRVICFVGDKDVRAAFIRDEMMPGEWDVCVTSYEMVIKEKSVFKKFHWRY 311
Query: 214 RLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQN 273
V DE H +N+ + + + + K+ R++L+GTP QN
Sbjct: 312 ----------------------LVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQN 349
Query: 274 NFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKE-LKE 332
N EL L+ + +V + A S N D+KL E L
Sbjct: 350 NLHELWALLNFL---LPDVFNS-------------ADDFDSWFDTKNCLGDQKLVERLHA 393
Query: 333 KIAPFVNVHKGTVLQESLPGLRHSVVIL-----QPDEFQKRLCKAVEGVKS--------- 378
+ PF+ T +++SLP + + L Q + + K L K ++ + S
Sbjct: 394 VLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRL 453
Query: 379 ---FVELNYCVSLLSVHPSLL-------PQQFFESFDVDSAKLARLKLDPEAGIKTRFLL 428
++L C + HP L P E +S K+ L + L
Sbjct: 454 LNILMQLRKCCN----HPYLFDGAEPGPPYTTDEHIVGNSGKMVAL---------DKLLA 500
Query: 429 ILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN 488
+ E + +VL+FSQ +T +++ L WR G E +DG+ ++R+ +I+ N
Sbjct: 501 RIKEQGS--RVLIFSQ----MTRLLDILEDYCMWR-GYEYSRLDGQTPHEEREEAIDAFN 553
Query: 489 DPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYH 548
P+S I + ST+A GINL A V+L D WNP V+ QA+ RA+R+GQK+ V V+
Sbjct: 554 APNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFR 613
Query: 549 LITSETLE 556
LIT T+E
Sbjct: 614 LITDNTVE 621
>sp|P87114|FFT1_SCHPO ATP-dependent helicase fft1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=fft1 PE=3 SV=1
Length = 944
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 144/505 (28%), Positives = 222/505 (43%), Gaps = 86/505 (17%)
Query: 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNK 166
I++ G GKT + FL + + + R +++ P S L W EF+K+
Sbjct: 436 ILADEMGLGKTCQVISFLASLKEKGIQNRHLVVVPSSTLGNWLREFEKFC---------- 485
Query: 167 PELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELS 226
P L + +G + N+ RY Y +L +Y+L S D+ S
Sbjct: 486 PSLRVESYSGTQSERINK----------RY---YLMDTDFDVLVTTYQLASG--SRDDRS 530
Query: 227 GILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR 286
+ + +FDEGH +N + +K L I R++++GTP QNN +EL +SL+
Sbjct: 531 FLRKQRFDISIFDEGHYLKNRMSERYKHLMNIPANFRLLITGTPLQNNLKEL---ISLLA 587
Query: 287 QEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV-NVHKGTV 345
+V + I K K S I R + E++ K + PF+ K V
Sbjct: 588 FMLPKVFDNNMQGLDIIYKIKTTS-DGDIERA--YLSQERISRAKTIMNPFILRRRKENV 644
Query: 346 LQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN---------------------Y 384
L + P ++H V +E Q L +V +K+ V N Y
Sbjct: 645 LSDLPPKIQH-VEYCHMEETQLSLYLSVLELKNLVNANRENILMQLRKAALHQLLFRSQY 703
Query: 385 CVSLLSVHPSLL----------PQQFFESFDVDS----AKLARL--KLDPEA-------- 420
+ LS+ + PQ FE +V S KLA L P A
Sbjct: 704 NLETLSLMSKRILREDAYLDANPQYIFEDMEVMSDFELHKLADQYRHLHPFALKGKPWMD 763
Query: 421 GIKTRFLLILLELST-NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKK 479
K + L LL+ S NE++L+FSQ+ + L I+E + + + E L +DG V+
Sbjct: 764 SAKVKKLCSLLKKSRPNERILIFSQFTQVLD-ILEYVLNTLDL----EFLRLDGSTPVET 818
Query: 480 RQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLG 539
RQ I+ + + ++ L STK+ GINL A+ V+L D +NPF + QA RA+R+G
Sbjct: 819 RQQLIDDFH-TNENYKVFLLSTKSGGFGINLTCANIVILFDCSFNPFDDMQAEDRAHRVG 877
Query: 540 QKRVVHVYHLITSETLEWDKLRRQA 564
Q R VHVY LIT T+E + +RR A
Sbjct: 878 QTRPVHVYRLITKNTIE-ENIRRLA 901
>sp|B0R0I6|CHD8_DANRE Chromodomain-helicase-DNA-binding protein 8 OS=Danio rerio GN=chd8
PE=3 SV=2
Length = 2511
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 117/508 (23%), Positives = 218/508 (42%), Gaps = 85/508 (16%)
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLN 165
CI++ G GKT ++ L + +IIAP S + WE EF W
Sbjct: 868 CILADEMGLGKTIQSIALLSEMFSAGVQSPFMIIAPLSTITNWEREFSNWT--------- 918
Query: 166 KPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225
+++ +G++A +R+ +I+ ++Y ++ +Y+ F+ L++ E+
Sbjct: 919 --DMNAIVYHGSLA---SRQ-------MIQQYEMYCKDDKGHLIPGAYK-FDALITTFEM 965
Query: 226 SGILLDLPGL-------FVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
IL D P L V DE H +N + + +L ++ +++L+GTP QN +EL
Sbjct: 966 --ILSDCPELREISWRCVVIDEAHRLKNRNCKLLDSLKMLEIEHKVLLTGTPLQNTVEEL 1023
Query: 279 ENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
+ L + A+ S I + + + +E++++L+ + P +
Sbjct: 1024 FSLLHF------------------LEPAQFPSEIEFLREFGDLKTEEQVQKLQSILKPMM 1065
Query: 339 NVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV-------------------EGVKSF 379
++++L + +++ ++ + QK+ +A+ + +
Sbjct: 1066 LRRLKEDVEKNLAPKQETIIEVELTDVQKKYYRAILERNFSFLSMGATQNSNVPNLLNTM 1125
Query: 380 VELNYCVSLLSVHPSLLP-------QQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE 432
+EL C + HP L+ + E +D + L AG +L
Sbjct: 1126 MELRKCCN----HPYLITGAEEKIVSELREVYDPLAPDFHLQALVRSAGKLVLLDKLLPR 1181
Query: 433 L-STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPS 491
L + KVL+FSQ + L ++ + L H+ E +DG+ RQ++I+ + P
Sbjct: 1182 LKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYE-----RIDGRVRGNLRQAAIDRFSKPD 1236
Query: 492 SQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLIT 551
S + L T+A GINL A V+ D WNP + QA +R +R+GQ + V VY LIT
Sbjct: 1237 SDRFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLIT 1296
Query: 552 SETLEWDKLRRQARKVWWSNMVFPSSDG 579
+ E + L + + K+ V S G
Sbjct: 1297 RNSYEREMLDKASLKLGLDRAVLQSMSG 1324
>sp|Q3L8U1|CHD9_HUMAN Chromodomain-helicase-DNA-binding protein 9 OS=Homo sapiens GN=CHD9
PE=1 SV=2
Length = 2897
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 128/524 (24%), Positives = 229/524 (43%), Gaps = 86/524 (16%)
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW-GIDIPFYNL 164
CI++ G GKT ++ FL + R +IIAP S + WE EF+ W I++ Y+
Sbjct: 881 CILADEMGLGKTIQSITFLYEILLTGIRGPFLIIAPLSTIANWEREFRTWTDINVVVYHG 940
Query: 165 NKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG-D 223
+ L ++ + +GR G R+ + + FE ++ G
Sbjct: 941 S---LISRQMIQQYEMYFRDSQGRIIRGAYRFQAIIT-------------TFEMILGGCG 984
Query: 224 ELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS 283
EL+ I + DE H +N + + + L + +++L+GTP QN +EL S
Sbjct: 985 ELNAIEWRC---VIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTPLQNTVEEL---FS 1038
Query: 284 LVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKG 343
L+ F E LR +S + + G + + +E++++L+ + P +
Sbjct: 1039 LLH--FLEPLRFPSES----------TFMQEFG---DLKTEEQVQKLQAILKPMMLRRLK 1083
Query: 344 TVLQESLPGLRHSVVILQPDEFQKRLCKAV---------EG---------VKSFVELNYC 385
+++ L +++ ++ QK+ +A+ +G V + +EL C
Sbjct: 1084 EDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLSKGAGQTNVPNLVNTMMELRKC 1143
Query: 386 VSLLSVHPSLLP---QQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL------STN 436
+ HP L+ ++ F D+ A +A I++ L+L++ +
Sbjct: 1144 CN----HPYLIKGAEEKILGEFR-DTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGG 1198
Query: 437 EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLY--MDGKQDVKKRQSSINVLNDPSSQA 494
KVL+FSQ + L ++ + L H+ LY +DG+ RQ++I+ + P S
Sbjct: 1199 HKVLIFSQMVRCLDILEDYLIHK-------RYLYERIDGRVRGNLRQAAIDRFSKPDSDR 1251
Query: 495 RIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554
+ L T+A GINL A ++ D WNP + QA +R +R+GQ + V VY L+T +
Sbjct: 1252 FVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNS 1311
Query: 555 LEWDKLRRQARKVWWSNMVFPSSDG-----GGNDQTTASEPLED 593
E + R + K+ V S G GG Q + E +ED
Sbjct: 1312 YEREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLSKKE-IED 1354
>sp|B5DE69|CHD8_XENTR Chromodomain-helicase-DNA-binding protein 8 OS=Xenopus tropicalis
GN=chd8 PE=2 SV=2
Length = 2184
Score = 113 bits (282), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 114/528 (21%), Positives = 231/528 (43%), Gaps = 86/528 (16%)
Query: 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLN 165
CI++ G GKT ++ FLQ + R ++IAP S + WE EF W
Sbjct: 776 CILADEMGLGKTIQSITFLQEVYNVGIRGPFLVIAPLSTITNWEREFGSWT--------- 826
Query: 166 KPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225
+++ +G++A +R+ +I+ ++Y ++ +Y+ F+ L++ E+
Sbjct: 827 --QMNTIVYHGSLA---SRQ-------MIQQYEMYCKDSKGRLIPGAYK-FDALITTFEM 873
Query: 226 SGILLDLPGL-------FVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQEL 278
+L D P L + DE H +N + + +L + +++L+GTP QN +EL
Sbjct: 874 --VLSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEEL 931
Query: 279 ENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV 338
+ L + + A + G + + +E++++L+ + P +
Sbjct: 932 FSLLHFLE---------------PTQFSSEAEFLKDFG---DLKTEEQVQKLQAILKPMM 973
Query: 339 NVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV---------EG---------VKSFV 380
++++L + +++ ++ QK+ +A+ +G + + +
Sbjct: 974 LRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGASQSNTPNLLNTMM 1033
Query: 381 ELNYCVSLLSVHPSLLP---QQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE----- 432
EL C + HP L+ ++ F ++ + +A +++ L+L++
Sbjct: 1034 ELRKCCN----HPYLITGAEEKIISEFR-EATPVVPPDFHVQAMVRSSGKLVLIDKLLPK 1088
Query: 433 -LSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPS 491
+ KVL+FSQ + L ++ + L R E +DG+ RQ++I+ + P
Sbjct: 1089 LRAGGHKVLIFSQMVRCLDILEDYLIQRRYLYE-----RIDGRVRGNMRQAAIDRFSRPD 1143
Query: 492 SQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLIT 551
S + L T+A GINL A ++ D WNP + QA +R +R+GQ + V +Y LIT
Sbjct: 1144 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKIYRLIT 1203
Query: 552 SETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTTASEPLEDKILEEM 599
+ E + + + K+ V S G N + + K +E++
Sbjct: 1204 RNSYEREMFDKASLKLGLDKAVLQSMSGRDNHLSGPIQQFTKKEIEDL 1251
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 247,086,151
Number of Sequences: 539616
Number of extensions: 10905349
Number of successful extensions: 26524
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 25600
Number of HSP's gapped (non-prelim): 713
length of query: 635
length of database: 191,569,459
effective HSP length: 124
effective length of query: 511
effective length of database: 124,657,075
effective search space: 63699765325
effective search space used: 63699765325
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)