Query 006698
Match_columns 635
No_of_seqs 349 out of 2435
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 13:12:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006698.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006698hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0385 Chromatin remodeling c 100.0 1.2E-92 2.6E-97 719.2 40.0 447 62-577 159-623 (971)
2 KOG0387 Transcription-coupled 100.0 1.9E-91 4.1E-96 714.4 35.3 472 60-577 196-682 (923)
3 KOG0384 Chromodomain-helicase 100.0 5.1E-92 1.1E-96 747.5 29.0 514 5-579 300-837 (1373)
4 KOG0390 DNA repair protein, SN 100.0 1.5E-85 3.3E-90 691.5 38.5 529 51-619 221-772 (776)
5 PLN03142 Probable chromatin-re 100.0 7.6E-84 1.6E-88 712.0 44.6 454 57-578 157-624 (1033)
6 KOG0392 SNF2 family DNA-depend 100.0 1.4E-83 3.1E-88 679.7 35.5 482 61-600 967-1495(1549)
7 KOG0389 SNF2 family DNA-depend 100.0 3.1E-83 6.7E-88 653.2 34.4 461 68-579 398-914 (941)
8 KOG0391 SNF2 family DNA-depend 100.0 1.1E-79 2.3E-84 643.1 30.3 462 59-578 605-1412(1958)
9 KOG0388 SNF2 family DNA-depend 100.0 6.8E-78 1.5E-82 604.2 30.4 469 59-578 557-1179(1185)
10 KOG1015 Transcription regulato 100.0 6.3E-78 1.4E-82 619.9 28.4 489 60-577 659-1301(1567)
11 KOG0386 Chromatin remodeling c 100.0 2.9E-72 6.2E-77 586.1 25.2 459 60-577 384-862 (1157)
12 KOG1002 Nucleotide excision re 100.0 1.1E-69 2.3E-74 526.0 27.9 469 61-579 176-775 (791)
13 KOG4439 RNA polymerase II tran 100.0 1.8E-69 3.9E-74 545.1 29.4 459 57-579 313-884 (901)
14 KOG1016 Predicted DNA helicase 100.0 1E-65 2.2E-70 520.1 19.2 498 61-579 247-875 (1387)
15 KOG1000 Chromatin remodeling p 100.0 2E-62 4.4E-67 476.0 31.3 458 61-609 190-662 (689)
16 PRK04914 ATP-dependent helicas 100.0 2.7E-60 5.9E-65 523.8 37.6 444 66-578 149-630 (956)
17 COG0553 HepA Superfamily II DN 100.0 4.4E-57 9.5E-62 523.6 33.2 466 64-576 333-845 (866)
18 KOG1001 Helicase-like transcri 100.0 1.2E-49 2.6E-54 423.8 21.1 434 74-576 135-673 (674)
19 KOG0383 Predicted helicase [Ge 100.0 8.8E-45 1.9E-49 380.1 10.6 449 3-507 223-696 (696)
20 TIGR00603 rad25 DNA repair hel 100.0 2.5E-41 5.4E-46 361.0 32.8 357 67-574 253-631 (732)
21 PF00176 SNF2_N: SNF2 family N 100.0 7E-40 1.5E-44 331.3 21.1 278 73-396 1-299 (299)
22 COG1111 MPH1 ERCC4-like helica 100.0 3.8E-37 8.2E-42 303.7 32.8 432 68-574 14-502 (542)
23 PRK13766 Hef nuclease; Provisi 100.0 4.8E-36 1E-40 339.7 30.8 431 69-570 15-496 (773)
24 KOG0298 DEAD box-containing he 100.0 1.2E-36 2.7E-41 326.8 13.5 139 421-571 1202-1344(1394)
25 COG1061 SSL2 DNA or RNA helica 100.0 4.9E-31 1.1E-35 275.8 32.0 364 65-565 32-406 (442)
26 KOG0354 DEAD-box like helicase 100.0 2.8E-31 6E-36 278.0 29.9 442 67-576 60-551 (746)
27 PHA02558 uvsW UvsW helicase; P 100.0 2.2E-31 4.7E-36 284.3 29.9 336 68-553 113-455 (501)
28 PRK11776 ATP-dependent RNA hel 100.0 1.7E-28 3.8E-33 261.4 29.0 316 69-553 26-349 (460)
29 PRK01297 ATP-dependent RNA hel 100.0 8.7E-28 1.9E-32 256.7 30.8 319 68-553 108-442 (475)
30 PRK10590 ATP-dependent RNA hel 100.0 3.5E-28 7.6E-33 257.8 27.4 328 68-565 22-362 (456)
31 PTZ00110 helicase; Provisional 100.0 8.2E-28 1.8E-32 258.6 30.4 321 69-553 152-484 (545)
32 PRK11192 ATP-dependent RNA hel 100.0 8.9E-28 1.9E-32 254.4 30.0 314 69-546 23-347 (434)
33 PLN00206 DEAD-box ATP-dependen 100.0 9.1E-28 2E-32 257.6 29.0 331 68-567 142-487 (518)
34 PRK04837 ATP-dependent RNA hel 100.0 7.2E-28 1.6E-32 253.8 26.9 316 69-553 30-362 (423)
35 TIGR00614 recQ_fam ATP-depende 100.0 1.3E-27 2.8E-32 254.1 26.5 310 68-547 10-329 (470)
36 PRK04537 ATP-dependent RNA hel 100.0 3.1E-27 6.6E-32 254.9 27.8 317 69-552 31-363 (572)
37 PRK11634 ATP-dependent RNA hel 100.0 1.1E-26 2.3E-31 252.0 30.5 326 69-564 28-361 (629)
38 PTZ00424 helicase 45; Provisio 100.0 6.6E-27 1.4E-31 246.1 26.5 321 69-555 50-376 (401)
39 PRK11057 ATP-dependent DNA hel 100.0 1.9E-26 4.1E-31 251.6 27.4 304 69-544 25-336 (607)
40 TIGR01389 recQ ATP-dependent D 99.9 4.1E-26 8.9E-31 250.0 26.9 305 69-545 13-325 (591)
41 PRK11448 hsdR type I restricti 99.9 5.8E-26 1.3E-30 257.7 28.2 369 68-550 412-815 (1123)
42 KOG1123 RNA polymerase II tran 99.9 1.2E-26 2.6E-31 227.2 17.8 341 67-558 300-658 (776)
43 KOG0330 ATP-dependent RNA heli 99.9 4E-26 8.6E-31 217.5 18.6 330 67-565 81-417 (476)
44 TIGR03817 DECH_helic helicase/ 99.9 4.9E-25 1.1E-29 243.8 28.9 344 69-562 36-395 (742)
45 PLN03137 ATP-dependent DNA hel 99.9 3.9E-25 8.5E-30 242.7 25.5 314 68-547 459-783 (1195)
46 PRK13767 ATP-dependent helicas 99.9 1.4E-24 2.9E-29 245.3 29.7 111 435-548 283-395 (876)
47 KOG0331 ATP-dependent RNA heli 99.9 7.5E-25 1.6E-29 223.2 22.5 332 69-566 113-463 (519)
48 TIGR00580 mfd transcription-re 99.9 8.4E-24 1.8E-28 236.1 31.5 316 66-553 448-770 (926)
49 PRK10917 ATP-dependent DNA hel 99.9 1.6E-23 3.4E-28 231.1 32.1 315 65-550 257-586 (681)
50 TIGR00643 recG ATP-dependent D 99.9 6.3E-24 1.4E-28 232.9 28.7 312 66-545 232-560 (630)
51 COG0513 SrmB Superfamily II DN 99.9 1.7E-23 3.7E-28 223.0 29.6 332 68-566 50-392 (513)
52 PRK02362 ski2-like helicase; P 99.9 1.5E-23 3.3E-28 234.8 29.0 326 69-552 23-396 (737)
53 PRK10689 transcription-repair 99.9 1E-22 2.2E-27 232.4 29.6 318 65-552 596-918 (1147)
54 KOG0350 DEAD-box ATP-dependent 99.9 3.2E-23 7E-28 203.7 19.0 386 68-568 158-553 (620)
55 PRK01172 ski2-like helicase; P 99.9 9.9E-22 2.1E-26 218.8 31.1 317 69-550 22-375 (674)
56 KOG0328 Predicted ATP-dependen 99.9 1.2E-23 2.7E-28 192.0 11.8 318 70-556 50-376 (400)
57 COG4096 HsdR Type I site-speci 99.9 2.4E-23 5.2E-28 218.0 15.6 360 66-550 162-545 (875)
58 PRK00254 ski2-like helicase; P 99.9 9.3E-22 2E-26 219.9 29.1 326 68-554 22-389 (720)
59 TIGR01587 cas3_core CRISPR-ass 99.9 3E-21 6.5E-26 199.7 30.1 135 423-566 208-354 (358)
60 COG1201 Lhr Lhr-like helicases 99.9 2.4E-21 5.2E-26 209.0 28.0 341 67-569 20-376 (814)
61 KOG0333 U5 snRNP-like RNA heli 99.9 1.8E-21 3.8E-26 192.5 22.1 347 68-554 266-625 (673)
62 TIGR00348 hsdR type I site-spe 99.9 3.5E-21 7.5E-26 211.5 23.8 378 67-551 236-649 (667)
63 COG1200 RecG RecG-like helicas 99.9 4.1E-20 8.8E-25 191.7 26.4 307 66-542 259-582 (677)
64 TIGR02621 cas3_GSU0051 CRISPR- 99.9 2.4E-20 5.1E-25 202.5 22.9 104 435-549 271-390 (844)
65 KOG0345 ATP-dependent RNA heli 99.9 7.1E-20 1.5E-24 179.2 23.9 317 69-544 28-357 (567)
66 KOG0342 ATP-dependent RNA heli 99.9 2.4E-20 5.2E-25 183.8 18.1 305 103-553 119-437 (543)
67 COG0514 RecQ Superfamily II DN 99.8 6.4E-20 1.4E-24 191.0 21.2 314 69-554 17-338 (590)
68 PRK09751 putative ATP-dependen 99.8 1E-19 2.2E-24 209.0 24.8 101 435-538 243-371 (1490)
69 KOG0335 ATP-dependent RNA heli 99.8 1.2E-19 2.7E-24 181.9 22.2 313 68-546 95-439 (482)
70 COG4889 Predicted helicase [Ge 99.8 3.7E-20 8E-25 192.5 17.7 403 62-550 154-585 (1518)
71 KOG0343 RNA Helicase [RNA proc 99.8 1.4E-19 3E-24 180.1 20.9 335 69-567 91-435 (758)
72 PHA02653 RNA helicase NPH-II; 99.8 4E-19 8.6E-24 192.1 25.6 112 435-556 394-517 (675)
73 TIGR03158 cas3_cyano CRISPR-as 99.8 3.3E-18 7.1E-23 175.0 29.0 88 434-536 270-357 (357)
74 COG1204 Superfamily II helicas 99.8 2.6E-19 5.6E-24 196.1 21.9 314 69-541 31-396 (766)
75 TIGR03714 secA2 accessory Sec 99.8 8.6E-19 1.9E-23 188.5 25.2 111 421-542 407-528 (762)
76 KOG0338 ATP-dependent RNA heli 99.8 2.8E-19 6.2E-24 176.3 18.0 130 423-564 413-542 (691)
77 KOG0340 ATP-dependent RNA heli 99.8 5.3E-19 1.2E-23 167.1 18.7 333 68-566 28-376 (442)
78 KOG0348 ATP-dependent RNA heli 99.8 7.8E-19 1.7E-23 174.3 20.6 121 431-556 420-557 (708)
79 COG1205 Distinct helicase fami 99.8 1.7E-18 3.7E-23 192.5 25.8 343 68-565 69-434 (851)
80 PRK09401 reverse gyrase; Revie 99.8 2.3E-18 4.9E-23 197.5 25.6 103 423-538 316-431 (1176)
81 KOG4284 DEAD box protein [Tran 99.8 4.8E-19 1E-23 179.1 16.7 304 105-552 64-378 (980)
82 KOG0332 ATP-dependent RNA heli 99.8 8.5E-18 1.8E-22 160.0 20.0 121 422-552 316-442 (477)
83 KOG0339 ATP-dependent RNA heli 99.8 5.2E-18 1.1E-22 167.3 19.1 306 103-556 260-578 (731)
84 KOG0336 ATP-dependent RNA heli 99.8 6.7E-18 1.4E-22 162.3 18.2 302 103-553 257-572 (629)
85 PRK05580 primosome assembly pr 99.8 8.7E-17 1.9E-21 177.0 29.0 98 448-551 438-549 (679)
86 COG1202 Superfamily II helicas 99.8 4.7E-18 1E-22 170.2 17.1 314 68-552 215-552 (830)
87 PRK09200 preprotein translocas 99.8 6.3E-17 1.4E-21 176.0 25.5 112 421-542 411-532 (790)
88 PRK12898 secA preprotein trans 99.8 1.3E-16 2.9E-21 169.8 26.4 129 420-563 455-593 (656)
89 KOG0326 ATP-dependent RNA heli 99.8 9.1E-19 2E-23 163.0 8.5 134 421-566 307-440 (459)
90 TIGR01970 DEAH_box_HrpB ATP-de 99.8 5.4E-17 1.2E-21 179.9 23.3 110 436-553 209-336 (819)
91 PF04851 ResIII: Type III rest 99.8 1.6E-18 3.6E-23 161.6 9.6 173 68-271 2-183 (184)
92 COG1197 Mfd Transcription-repa 99.8 3.5E-16 7.6E-21 171.8 27.2 314 65-552 590-912 (1139)
93 TIGR00595 priA primosomal prot 99.8 2.4E-16 5.1E-21 167.4 25.3 98 449-552 271-382 (505)
94 KOG0341 DEAD-box protein abstr 99.7 1.6E-17 3.6E-22 158.5 14.5 130 421-561 407-536 (610)
95 KOG0344 ATP-dependent RNA heli 99.7 4.7E-17 1E-21 164.6 18.6 126 418-552 369-494 (593)
96 TIGR00963 secA preprotein tran 99.7 5.1E-17 1.1E-21 173.8 19.7 112 421-542 388-508 (745)
97 TIGR01054 rgy reverse gyrase. 99.7 3.8E-16 8.2E-21 179.6 26.5 87 425-523 316-409 (1171)
98 PRK09694 helicase Cas3; Provis 99.7 1.1E-15 2.5E-20 169.4 27.8 102 435-541 559-665 (878)
99 KOG0347 RNA helicase [RNA proc 99.7 1.4E-17 3E-22 166.0 11.1 97 436-540 463-559 (731)
100 PRK14701 reverse gyrase; Provi 99.7 5.6E-16 1.2E-20 181.8 24.8 104 425-541 320-446 (1638)
101 cd00079 HELICc Helicase superf 99.7 6.3E-17 1.4E-21 141.7 11.8 118 422-547 12-131 (131)
102 KOG0346 RNA helicase [RNA proc 99.7 2.6E-16 5.6E-21 153.1 16.6 123 421-553 252-410 (569)
103 PRK11664 ATP-dependent RNA hel 99.7 5.7E-16 1.2E-20 172.3 21.7 112 435-554 211-340 (812)
104 KOG0334 RNA helicase [RNA proc 99.7 1.4E-15 3E-20 164.0 18.8 123 420-552 596-719 (997)
105 KOG0327 Translation initiation 99.7 1.2E-15 2.6E-20 146.8 15.3 120 423-554 252-371 (397)
106 PF00271 Helicase_C: Helicase 99.6 3.3E-16 7.1E-21 123.1 6.5 77 455-539 2-78 (78)
107 COG4098 comFA Superfamily II D 99.6 4.4E-13 9.6E-18 127.0 27.2 309 67-550 95-413 (441)
108 KOG0351 ATP-dependent DNA heli 99.6 8.3E-15 1.8E-19 162.1 18.2 317 67-548 262-589 (941)
109 TIGR00631 uvrb excinuclease AB 99.6 3.2E-13 6.9E-18 147.1 29.6 130 421-561 425-563 (655)
110 PRK11131 ATP-dependent RNA hel 99.6 4.8E-14 1E-18 159.9 23.9 111 435-555 285-413 (1294)
111 KOG0952 DNA/RNA helicase MER3/ 99.6 2.8E-14 6E-19 152.9 20.5 317 103-556 126-494 (1230)
112 cd00046 DEXDc DEAD-like helica 99.6 3E-15 6.6E-20 132.8 10.5 138 105-270 2-144 (144)
113 smart00487 DEXDc DEAD-like hel 99.6 5.5E-15 1.2E-19 139.5 12.4 159 68-273 7-173 (201)
114 COG0556 UvrB Helicase subunit 99.6 2.6E-13 5.7E-18 135.9 23.0 122 435-565 445-571 (663)
115 PRK13104 secA preprotein trans 99.6 2.8E-13 6.1E-18 147.5 24.7 115 421-545 427-581 (896)
116 KOG0352 ATP-dependent DNA heli 99.6 2.1E-13 4.6E-18 132.4 20.2 327 71-548 22-359 (641)
117 TIGR01967 DEAH_box_HrpA ATP-de 99.6 2.1E-13 4.6E-18 155.3 22.8 112 435-556 278-407 (1283)
118 PRK05298 excinuclease ABC subu 99.6 3.2E-12 6.9E-17 140.5 31.3 122 421-553 429-557 (652)
119 PRK12906 secA preprotein trans 99.6 2.7E-13 5.8E-18 146.9 20.8 114 421-544 423-546 (796)
120 COG1203 CRISPR-associated heli 99.5 4.3E-13 9.4E-18 149.4 22.7 131 435-574 439-573 (733)
121 KOG0353 ATP-dependent DNA heli 99.5 1.9E-13 4.1E-18 130.6 16.8 320 68-550 93-466 (695)
122 PRK12904 preprotein translocas 99.5 1.2E-12 2.6E-17 142.4 23.6 115 421-545 413-567 (830)
123 KOG0337 ATP-dependent RNA heli 99.5 6.3E-14 1.4E-18 136.0 12.0 318 67-553 41-368 (529)
124 cd00268 DEADc DEAD-box helicas 99.5 9.4E-14 2E-18 131.6 12.1 156 69-271 21-185 (203)
125 PRK13107 preprotein translocas 99.5 2.1E-12 4.5E-17 140.3 22.3 112 421-542 432-582 (908)
126 smart00490 HELICc helicase sup 99.5 6.4E-14 1.4E-18 111.4 8.0 81 451-539 2-82 (82)
127 KOG0951 RNA helicase BRR2, DEA 99.5 9.9E-13 2.2E-17 143.0 19.5 301 103-540 325-689 (1674)
128 PF00270 DEAD: DEAD/DEAH box h 99.5 1.2E-13 2.5E-18 126.8 10.8 158 72-276 2-167 (169)
129 PRK12900 secA preprotein trans 99.4 2.2E-11 4.7E-16 133.0 23.9 112 421-542 581-702 (1025)
130 PF13872 AAA_34: P-loop contai 99.4 1.7E-11 3.6E-16 117.4 16.7 248 61-372 27-302 (303)
131 KOG1513 Nuclear helicase MOP-3 99.4 1.6E-11 3.4E-16 127.8 16.4 255 62-373 257-537 (1300)
132 COG4581 Superfamily II RNA hel 99.3 1.5E-10 3.2E-15 128.0 21.3 149 66-270 116-270 (1041)
133 KOG0947 Cytoplasmic exosomal R 99.3 3.5E-10 7.7E-15 120.6 22.1 145 68-270 296-444 (1248)
134 COG1198 PriA Primosomal protei 99.2 1.7E-09 3.6E-14 117.2 24.4 368 68-552 197-604 (730)
135 TIGR01407 dinG_rel DnaQ family 99.2 1.6E-09 3.5E-14 123.7 23.7 82 435-523 673-756 (850)
136 PRK12326 preprotein translocas 99.2 3.8E-09 8.3E-14 112.6 22.0 129 421-564 410-555 (764)
137 PRK12899 secA preprotein trans 99.1 9.8E-09 2.1E-13 112.4 24.3 114 421-544 551-674 (970)
138 KOG0329 ATP-dependent RNA heli 99.1 2.1E-10 4.6E-15 104.3 7.5 137 105-270 81-227 (387)
139 KOG0948 Nuclear exosomal RNA h 99.1 1.3E-09 2.8E-14 113.6 14.0 144 69-270 129-276 (1041)
140 COG0610 Type I site-specific r 99.1 1.7E-08 3.6E-13 115.2 24.2 145 101-274 271-417 (962)
141 KOG0950 DNA polymerase theta/e 99.1 1.5E-08 3.3E-13 109.1 21.0 70 467-540 524-598 (1008)
142 PRK13103 secA preprotein trans 99.1 7.3E-09 1.6E-13 113.2 18.8 115 421-545 432-585 (913)
143 TIGR00604 rad3 DNA repair heli 99.0 1.2E-07 2.6E-12 106.3 28.3 72 69-155 10-83 (705)
144 TIGR00596 rad1 DNA repair prot 99.0 1.5E-08 3.2E-13 112.3 18.6 79 204-285 6-89 (814)
145 KOG0949 Predicted helicase, DE 99.0 5.9E-08 1.3E-12 104.3 21.6 154 102-283 525-682 (1330)
146 PRK12903 secA preprotein trans 98.9 1.5E-07 3.2E-12 102.2 21.7 114 421-545 409-533 (925)
147 COG1643 HrpA HrpA-like helicas 98.9 2.7E-07 5.8E-12 102.0 22.7 114 435-556 258-390 (845)
148 KOG0922 DEAH-box RNA helicase 98.9 2.1E-07 4.6E-12 97.0 20.5 119 435-556 257-393 (674)
149 COG1110 Reverse gyrase [DNA re 98.9 6E-07 1.3E-11 97.7 24.4 87 423-522 323-416 (1187)
150 KOG0953 Mitochondrial RNA heli 98.9 1.2E-07 2.6E-12 96.3 17.3 109 435-551 357-475 (700)
151 TIGR03117 cas_csf4 CRISPR-asso 98.8 3.7E-06 8.1E-11 90.8 29.0 95 424-527 459-565 (636)
152 PF07652 Flavi_DEAD: Flaviviru 98.8 2.8E-08 6E-13 84.5 10.1 129 103-271 4-137 (148)
153 PF02399 Herpes_ori_bp: Origin 98.8 1.1E-06 2.4E-11 95.0 24.4 111 423-548 268-385 (824)
154 PRK15483 type III restriction- 98.8 6.3E-08 1.4E-12 107.4 14.6 204 71-287 8-264 (986)
155 PF11496 HDA2-3: Class II hist 98.7 2E-07 4.4E-12 91.6 14.5 201 354-564 4-256 (297)
156 COG1199 DinG Rad3-related DNA 98.7 1.8E-06 4E-11 96.8 23.6 107 425-542 469-608 (654)
157 KOG0920 ATP-dependent RNA heli 98.7 3.1E-06 6.8E-11 93.4 23.9 128 423-556 396-547 (924)
158 PRK12901 secA preprotein trans 98.7 3.4E-06 7.4E-11 93.3 23.1 113 421-543 611-733 (1112)
159 CHL00122 secA preprotein trans 98.7 3.8E-06 8.2E-11 92.0 22.7 82 421-511 407-491 (870)
160 KOG0349 Putative DEAD-box RNA 98.7 7.1E-08 1.5E-12 94.6 8.3 103 431-538 500-602 (725)
161 KOG0924 mRNA splicing factor A 98.6 2.2E-06 4.8E-11 89.1 18.9 122 437-561 564-705 (1042)
162 PRK07246 bifunctional ATP-depe 98.6 5.9E-06 1.3E-10 93.5 24.2 78 435-523 646-725 (820)
163 PF13871 Helicase_C_4: Helicas 98.6 3.9E-07 8.5E-12 87.5 11.0 98 482-582 52-157 (278)
164 PRK08074 bifunctional ATP-depe 98.6 5.6E-05 1.2E-09 87.3 30.2 85 436-526 752-839 (928)
165 PRK12902 secA preprotein trans 98.6 7.5E-06 1.6E-10 89.7 21.4 82 421-511 422-506 (939)
166 smart00489 DEXDc3 DEAD-like he 98.6 3.5E-07 7.6E-12 90.6 10.5 72 69-155 8-84 (289)
167 smart00488 DEXDc2 DEAD-like he 98.6 3.5E-07 7.6E-12 90.6 10.5 72 69-155 8-84 (289)
168 KOG0926 DEAH-box RNA helicase 98.5 1E-06 2.2E-11 93.1 13.3 65 485-552 621-703 (1172)
169 KOG0925 mRNA splicing factor A 98.5 3.2E-06 7E-11 84.7 16.0 114 436-556 253-390 (699)
170 TIGR02562 cas3_yersinia CRISPR 98.4 7.8E-05 1.7E-09 83.2 25.8 75 69-154 408-483 (1110)
171 KOG0923 mRNA splicing factor A 98.4 5.2E-06 1.1E-10 86.2 14.8 110 435-552 472-605 (902)
172 PRK14873 primosome assembly pr 98.3 2.7E-05 5.9E-10 85.4 18.3 131 107-270 164-303 (665)
173 PF13086 AAA_11: AAA domain; P 98.2 6.2E-06 1.3E-10 79.8 8.9 67 69-154 1-75 (236)
174 PF02562 PhoH: PhoH-like prote 97.9 2.4E-05 5.1E-10 72.4 7.4 157 70-276 5-161 (205)
175 COG0653 SecA Preprotein transl 97.9 0.00047 1E-08 75.6 18.4 110 421-540 412-534 (822)
176 PRK10536 hypothetical protein; 97.7 0.00012 2.5E-09 69.8 8.2 156 70-275 60-217 (262)
177 PF09848 DUF2075: Uncharacteri 97.7 0.00014 3.1E-09 74.8 9.5 50 105-154 3-53 (352)
178 KOG1131 RNA polymerase II tran 97.6 0.00014 3.1E-09 73.8 7.0 60 69-143 16-76 (755)
179 PF13604 AAA_30: AAA domain; P 97.6 0.00084 1.8E-08 62.6 11.3 58 69-145 1-58 (196)
180 COG3587 Restriction endonuclea 97.5 0.0003 6.6E-09 75.9 7.8 142 101-270 72-242 (985)
181 KOG1803 DNA helicase [Replicat 97.5 0.00019 4.1E-09 74.8 6.1 67 65-151 181-248 (649)
182 KOG1132 Helicase of the DEAD s 97.4 0.00073 1.6E-08 73.4 9.6 89 62-165 14-143 (945)
183 KOG4150 Predicted ATP-dependen 97.2 0.0011 2.5E-08 68.1 8.2 134 421-560 508-647 (1034)
184 PF13401 AAA_22: AAA domain; P 97.2 0.00067 1.5E-08 58.8 5.7 35 234-270 89-125 (131)
185 PF12340 DUF3638: Protein of u 97.2 0.003 6.4E-08 59.1 9.8 72 67-155 21-92 (229)
186 TIGR01447 recD exodeoxyribonuc 97.2 0.0038 8.3E-08 68.0 12.3 56 72-146 148-206 (586)
187 KOG0951 RNA helicase BRR2, DEA 97.2 0.0088 1.9E-07 67.6 14.8 106 102-247 1158-1268(1674)
188 TIGR01448 recD_rel helicase, p 97.2 0.0043 9.3E-08 69.7 12.9 67 66-151 320-386 (720)
189 PF13307 Helicase_C_2: Helicas 97.2 0.0018 4E-08 58.6 8.3 100 435-542 8-141 (167)
190 PF07517 SecA_DEAD: SecA DEAD- 96.9 0.0031 6.8E-08 61.0 7.9 127 67-244 75-209 (266)
191 PRK04296 thymidine kinase; Pro 96.8 0.0038 8.1E-08 58.0 7.5 35 105-141 4-38 (190)
192 PRK10875 recD exonuclease V su 96.8 0.0087 1.9E-07 65.4 10.9 57 72-147 155-213 (615)
193 TIGR02881 spore_V_K stage V sp 96.7 0.0062 1.3E-07 59.8 8.7 28 103-130 42-69 (261)
194 PRK11747 dinG ATP-dependent DN 96.7 0.0089 1.9E-07 67.1 10.3 85 428-523 528-616 (697)
195 TIGR01075 uvrD DNA helicase II 96.6 0.33 7.2E-06 55.2 22.1 67 69-156 4-73 (715)
196 PF13245 AAA_19: Part of AAA d 96.4 0.0084 1.8E-07 46.0 5.7 49 104-152 11-62 (76)
197 TIGR02880 cbbX_cfxQ probable R 96.4 0.024 5.2E-07 56.2 10.4 30 103-132 58-87 (284)
198 KOG1802 RNA helicase nonsense 96.4 0.0063 1.4E-07 64.1 6.2 74 69-164 410-484 (935)
199 PRK06526 transposase; Provisio 96.4 0.012 2.7E-07 57.0 7.9 46 103-154 98-143 (254)
200 PRK11773 uvrD DNA-dependent he 96.3 0.67 1.4E-05 52.7 22.8 68 68-156 8-78 (721)
201 PRK12723 flagellar biosynthesi 96.3 0.053 1.1E-06 55.9 12.5 55 231-285 253-312 (388)
202 PLN03025 replication factor C 96.3 0.043 9.4E-07 55.6 11.7 25 104-128 35-59 (319)
203 PRK14088 dnaA chromosomal repl 96.2 0.038 8.3E-07 58.4 11.1 40 103-142 130-169 (440)
204 smart00382 AAA ATPases associa 96.2 0.026 5.7E-07 49.0 8.5 47 103-151 2-48 (148)
205 TIGR03015 pepcterm_ATPase puta 96.1 0.062 1.4E-06 53.0 11.8 22 105-126 45-66 (269)
206 cd00009 AAA The AAA+ (ATPases 96.1 0.063 1.4E-06 47.0 10.8 26 103-128 19-44 (151)
207 TIGR00362 DnaA chromosomal rep 96.1 0.032 7E-07 58.7 9.8 38 103-140 136-173 (405)
208 PRK00149 dnaA chromosomal repl 96.0 0.033 7.2E-07 59.4 9.8 50 103-152 148-197 (450)
209 KOG0989 Replication factor C, 96.0 0.042 9.1E-07 53.1 9.2 43 73-128 40-82 (346)
210 TIGR03420 DnaA_homol_Hda DnaA 95.9 0.039 8.5E-07 52.8 8.8 42 103-147 38-79 (226)
211 PRK14087 dnaA chromosomal repl 95.8 0.057 1.2E-06 57.2 10.5 50 103-152 141-190 (450)
212 PRK08084 DNA replication initi 95.8 0.084 1.8E-06 50.8 10.7 27 103-129 45-71 (235)
213 TIGR01073 pcrA ATP-dependent D 95.8 1.6 3.4E-05 49.9 22.5 66 69-155 4-72 (726)
214 CHL00181 cbbX CbbX; Provisiona 95.7 0.055 1.2E-06 53.7 9.3 29 103-131 59-87 (287)
215 PRK12402 replication factor C 95.7 0.046 1E-06 56.0 9.1 25 105-129 38-62 (337)
216 PRK07003 DNA polymerase III su 95.7 0.047 1E-06 60.0 9.3 26 103-128 38-63 (830)
217 PF00448 SRP54: SRP54-type pro 95.7 0.043 9.3E-07 51.0 7.8 48 106-155 4-51 (196)
218 COG3421 Uncharacterized protei 95.7 0.026 5.6E-07 59.1 6.7 40 109-149 3-43 (812)
219 PRK14956 DNA polymerase III su 95.6 0.061 1.3E-06 56.5 9.5 24 105-128 42-65 (484)
220 PHA02533 17 large terminase pr 95.6 0.16 3.4E-06 55.0 12.8 55 68-141 58-112 (534)
221 PRK07952 DNA replication prote 95.6 0.24 5.1E-06 47.7 12.7 46 103-154 99-144 (244)
222 PRK08116 hypothetical protein; 95.6 0.077 1.7E-06 52.1 9.6 44 103-148 114-157 (268)
223 KOG0952 DNA/RNA helicase MER3/ 95.6 0.0056 1.2E-07 67.9 1.7 114 103-247 943-1061(1230)
224 PF13173 AAA_14: AAA domain 95.6 0.096 2.1E-06 45.0 9.1 25 104-128 3-27 (128)
225 COG1875 NYN ribonuclease and A 95.6 0.046 1E-06 54.1 7.7 37 234-272 353-389 (436)
226 TIGR02928 orc1/cdc6 family rep 95.5 0.11 2.3E-06 54.0 11.0 48 70-129 19-66 (365)
227 COG0553 HepA Superfamily II DN 95.5 0.0091 2E-07 69.9 3.3 72 67-155 82-155 (866)
228 PRK09112 DNA polymerase III su 95.5 0.095 2.1E-06 53.5 10.2 44 74-129 28-71 (351)
229 TIGR00376 DNA helicase, putati 95.5 0.035 7.6E-07 61.5 7.5 68 68-155 156-224 (637)
230 KOG1805 DNA replication helica 95.4 0.08 1.7E-06 58.8 9.7 70 67-156 667-737 (1100)
231 PRK08727 hypothetical protein; 95.4 0.11 2.4E-06 50.0 9.8 27 104-130 42-68 (233)
232 PRK14086 dnaA chromosomal repl 95.2 0.11 2.5E-06 56.2 10.0 50 103-152 314-363 (617)
233 PRK14974 cell division protein 95.1 0.2 4.3E-06 50.7 11.0 51 103-155 140-194 (336)
234 PRK10919 ATP-dependent DNA hel 95.1 0.15 3.2E-06 57.2 11.0 66 69-155 2-70 (672)
235 PRK14961 DNA polymerase III su 95.0 0.18 3.9E-06 52.1 10.7 25 104-128 39-63 (363)
236 TIGR01074 rep ATP-dependent DN 95.0 0.27 5.9E-06 55.5 12.9 66 70-156 2-70 (664)
237 PRK14960 DNA polymerase III su 94.9 0.098 2.1E-06 56.9 8.6 26 103-128 37-62 (702)
238 PRK14962 DNA polymerase III su 94.9 0.083 1.8E-06 56.2 8.0 25 104-128 37-61 (472)
239 smart00492 HELICc3 helicase su 94.9 0.17 3.6E-06 44.2 8.6 53 468-523 25-79 (141)
240 cd01121 Sms Sms (bacterial rad 94.9 0.2 4.3E-06 51.6 10.5 51 103-155 82-132 (372)
241 cd01124 KaiC KaiC is a circadi 94.9 0.16 3.5E-06 46.9 9.2 49 106-156 2-50 (187)
242 PRK12422 chromosomal replicati 94.8 0.13 2.9E-06 54.3 9.3 38 103-142 141-178 (445)
243 smart00491 HELICc2 helicase su 94.8 0.13 2.8E-06 45.0 7.7 53 469-523 23-80 (142)
244 COG1484 DnaC DNA replication p 94.8 0.081 1.8E-06 51.4 7.1 50 102-153 104-153 (254)
245 PRK12323 DNA polymerase III su 94.8 0.21 4.5E-06 54.4 10.4 27 103-129 38-64 (700)
246 PRK08181 transposase; Validate 94.7 0.46 1E-05 46.5 12.0 28 103-130 106-133 (269)
247 PRK14952 DNA polymerase III su 94.7 0.17 3.7E-06 55.1 9.9 25 105-129 37-61 (584)
248 PRK05703 flhF flagellar biosyn 94.7 0.4 8.7E-06 50.4 12.3 55 232-287 299-359 (424)
249 PRK06893 DNA replication initi 94.7 0.2 4.3E-06 48.1 9.3 27 105-131 41-67 (229)
250 PRK14963 DNA polymerase III su 94.7 0.28 6E-06 52.8 11.3 37 105-141 38-74 (504)
251 PF13177 DNA_pol3_delta2: DNA 94.7 0.51 1.1E-05 42.4 11.4 48 74-133 2-49 (162)
252 PRK06645 DNA polymerase III su 94.7 0.18 4E-06 53.9 9.8 27 103-129 43-69 (507)
253 PRK07994 DNA polymerase III su 94.6 0.26 5.6E-06 54.2 10.9 25 105-129 40-64 (647)
254 PRK07940 DNA polymerase III su 94.6 0.18 4E-06 52.2 9.4 27 103-129 36-62 (394)
255 KOG0991 Replication factor C, 94.5 0.25 5.5E-06 45.8 8.8 26 103-128 48-73 (333)
256 PRK06921 hypothetical protein; 94.5 0.26 5.7E-06 48.3 9.8 37 103-140 117-153 (266)
257 PF00308 Bac_DnaA: Bacterial d 94.5 0.28 6.1E-06 46.6 9.7 39 103-141 34-72 (219)
258 TIGR02768 TraA_Ti Ti-type conj 94.4 0.37 7.9E-06 54.7 12.1 59 68-146 351-409 (744)
259 PTZ00112 origin recognition co 94.4 0.42 9.2E-06 53.5 11.8 47 70-128 759-806 (1164)
260 PRK11747 dinG ATP-dependent DN 94.4 0.32 6.9E-06 54.8 11.4 69 68-147 24-93 (697)
261 PRK05642 DNA replication initi 94.3 0.27 5.8E-06 47.3 9.3 35 104-140 46-80 (234)
262 TIGR03689 pup_AAA proteasome A 94.3 0.19 4.1E-06 53.6 8.8 27 101-127 214-240 (512)
263 PRK14949 DNA polymerase III su 94.2 0.25 5.4E-06 55.7 9.8 24 105-128 40-63 (944)
264 PRK14964 DNA polymerase III su 94.2 0.33 7.2E-06 51.6 10.4 26 103-128 35-60 (491)
265 PRK13889 conjugal transfer rel 94.2 0.29 6.2E-06 56.6 10.6 58 69-146 346-403 (988)
266 PRK11889 flhF flagellar biosyn 94.1 0.58 1.3E-05 47.9 11.3 46 103-150 241-290 (436)
267 PRK00440 rfc replication facto 94.0 0.68 1.5E-05 46.9 12.2 24 104-127 39-62 (319)
268 PRK06835 DNA replication prote 94.0 0.67 1.4E-05 46.9 11.7 29 103-131 183-211 (329)
269 PRK05707 DNA polymerase III su 93.9 0.35 7.5E-06 49.0 9.6 47 69-130 3-49 (328)
270 PRK06871 DNA polymerase III su 93.9 0.49 1.1E-05 47.6 10.5 50 70-131 3-52 (325)
271 PRK14951 DNA polymerase III su 93.9 0.45 9.8E-06 52.2 11.0 44 74-129 21-64 (618)
272 PRK04195 replication factor C 93.9 0.64 1.4E-05 50.1 12.1 25 103-127 39-63 (482)
273 COG0464 SpoVK ATPases of the A 93.8 0.26 5.6E-06 53.4 9.2 76 68-155 248-323 (494)
274 PRK08769 DNA polymerase III su 93.8 0.68 1.5E-05 46.5 11.3 52 68-131 3-54 (319)
275 KOG0738 AAA+-type ATPase [Post 93.7 0.11 2.4E-06 51.9 5.3 47 103-155 245-292 (491)
276 PRK14722 flhF flagellar biosyn 93.7 0.6 1.3E-05 47.8 10.8 42 102-143 136-177 (374)
277 PRK12377 putative replication 93.7 0.61 1.3E-05 45.0 10.4 44 103-148 101-144 (248)
278 PHA02544 44 clamp loader, smal 93.7 0.62 1.3E-05 47.2 11.1 22 105-126 44-66 (316)
279 PRK14955 DNA polymerase III su 93.7 0.41 9E-06 50.1 10.0 27 103-129 38-64 (397)
280 COG2256 MGS1 ATPase related to 93.7 0.6 1.3E-05 47.2 10.4 24 102-125 47-70 (436)
281 PRK11823 DNA repair protein Ra 93.6 0.6 1.3E-05 49.5 11.2 51 103-155 80-130 (446)
282 PRK07764 DNA polymerase III su 93.6 0.25 5.4E-06 56.2 8.7 25 104-128 38-62 (824)
283 PRK09111 DNA polymerase III su 93.6 0.38 8.2E-06 52.8 9.8 46 73-130 28-73 (598)
284 PF00004 AAA: ATPase family as 93.6 0.14 3.1E-06 44.0 5.4 36 107-147 2-37 (132)
285 PRK09183 transposase/IS protei 93.5 0.5 1.1E-05 46.2 9.6 41 103-145 102-142 (259)
286 COG0552 FtsY Signal recognitio 93.4 0.83 1.8E-05 45.3 10.7 127 103-277 139-276 (340)
287 TIGR03345 VI_ClpV1 type VI sec 93.4 0.43 9.4E-06 54.9 10.3 41 74-127 192-232 (852)
288 PRK07471 DNA polymerase III su 93.3 0.6 1.3E-05 48.0 10.2 47 73-131 23-69 (365)
289 PRK14958 DNA polymerase III su 93.3 0.48 1E-05 51.0 9.9 25 104-128 39-63 (509)
290 PRK13894 conjugal transfer ATP 93.2 1.5 3.2E-05 44.2 12.6 50 228-283 215-264 (319)
291 PF05876 Terminase_GpA: Phage 93.2 0.31 6.7E-06 53.2 8.4 169 65-282 12-191 (557)
292 PF06733 DEAD_2: DEAD_2; Inte 93.2 0.06 1.3E-06 49.2 2.5 42 204-246 118-159 (174)
293 PF06862 DUF1253: Protein of u 93.1 1.6 3.5E-05 45.5 12.9 125 435-568 299-428 (442)
294 PF05621 TniB: Bacterial TniB 93.1 1.8 3.8E-05 42.7 12.4 25 101-125 59-83 (302)
295 PRK08533 flagellar accessory p 93.1 0.63 1.4E-05 44.6 9.4 52 102-155 23-74 (230)
296 PRK00411 cdc6 cell division co 93.0 1.8 4E-05 45.3 13.8 29 103-131 55-83 (394)
297 PF00580 UvrD-helicase: UvrD/R 93.0 0.18 3.9E-06 50.9 6.0 64 70-154 1-67 (315)
298 PRK07993 DNA polymerase III su 93.0 0.55 1.2E-05 47.7 9.3 50 69-130 2-51 (334)
299 PRK10917 ATP-dependent DNA hel 93.0 0.74 1.6E-05 51.9 11.2 104 416-522 288-393 (681)
300 COG0593 DnaA ATPase involved i 92.9 0.59 1.3E-05 48.1 9.3 31 103-133 113-143 (408)
301 COG3267 ExeA Type II secretory 92.8 1.3 2.8E-05 42.1 10.6 48 103-153 51-104 (269)
302 PTZ00454 26S protease regulato 92.8 0.33 7.1E-06 50.5 7.5 26 101-126 177-202 (398)
303 PRK14957 DNA polymerase III su 92.8 0.59 1.3E-05 50.5 9.5 25 104-128 39-63 (546)
304 PRK13342 recombination factor 92.7 0.83 1.8E-05 48.1 10.6 24 103-126 36-59 (413)
305 PRK08058 DNA polymerase III su 92.4 0.72 1.5E-05 46.9 9.3 47 72-130 9-55 (329)
306 PRK10865 protein disaggregatio 92.4 0.65 1.4E-05 53.6 9.9 41 74-127 183-223 (857)
307 cd01120 RecA-like_NTPases RecA 92.4 0.83 1.8E-05 40.7 8.9 34 106-141 2-35 (165)
308 TIGR01243 CDC48 AAA family ATP 92.3 0.51 1.1E-05 53.8 8.9 46 101-151 485-530 (733)
309 PRK03992 proteasome-activating 92.3 0.21 4.6E-06 52.0 5.5 27 101-127 163-189 (389)
310 PRK14948 DNA polymerase III su 92.3 1.2 2.5E-05 49.4 11.4 27 103-129 38-64 (620)
311 KOG0733 Nuclear AAA ATPase (VC 92.3 0.94 2E-05 48.3 9.8 50 100-155 542-592 (802)
312 PRK08939 primosomal protein Dn 92.3 1.1 2.4E-05 44.9 10.2 36 102-139 155-190 (306)
313 TIGR02639 ClpA ATP-dependent C 92.1 1.1 2.5E-05 50.9 11.4 27 103-129 203-229 (731)
314 KOG0739 AAA+-type ATPase [Post 92.1 0.62 1.4E-05 45.0 7.6 47 103-155 166-213 (439)
315 PRK08760 replicative DNA helic 92.0 1.2 2.7E-05 47.6 10.8 58 103-161 229-286 (476)
316 PRK07133 DNA polymerase III su 92.0 0.66 1.4E-05 51.5 8.9 26 103-128 40-65 (725)
317 PRK08903 DnaA regulatory inact 92.0 0.8 1.7E-05 43.8 8.7 27 103-129 42-68 (227)
318 PRK08691 DNA polymerase III su 92.0 3.6 7.8E-05 45.6 14.3 26 103-128 38-63 (709)
319 PF00265 TK: Thymidine kinase; 92.0 0.9 1.9E-05 41.4 8.4 34 107-142 5-38 (176)
320 PRK06090 DNA polymerase III su 91.9 1.3 2.8E-05 44.5 10.2 51 69-131 3-53 (319)
321 PRK08451 DNA polymerase III su 91.9 1 2.3E-05 48.4 10.0 25 105-129 38-62 (535)
322 PRK09165 replicative DNA helic 91.9 1.2 2.6E-05 48.0 10.6 59 103-161 217-288 (497)
323 PF05496 RuvB_N: Holliday junc 91.8 0.33 7.2E-06 45.4 5.5 24 103-126 50-73 (233)
324 CHL00095 clpC Clp protease ATP 91.8 0.89 1.9E-05 52.5 10.1 26 103-128 200-225 (821)
325 PF01695 IstB_IS21: IstB-like 91.7 0.22 4.7E-06 45.5 4.2 45 103-153 47-91 (178)
326 PRK00771 signal recognition pa 91.7 0.9 2E-05 47.8 9.2 38 102-141 94-131 (437)
327 PRK14969 DNA polymerase III su 91.7 0.73 1.6E-05 50.0 8.8 25 104-128 39-63 (527)
328 PRK00080 ruvB Holliday junctio 91.6 0.89 1.9E-05 46.3 9.0 25 103-127 51-75 (328)
329 KOG0740 AAA+-type ATPase [Post 91.6 0.34 7.4E-06 49.9 5.8 48 103-155 186-233 (428)
330 PF06745 KaiC: KaiC; InterPro 91.6 0.25 5.4E-06 47.3 4.6 54 102-157 18-72 (226)
331 PRK14959 DNA polymerase III su 91.5 0.85 1.9E-05 49.8 9.0 26 103-128 38-63 (624)
332 PRK06647 DNA polymerase III su 91.5 0.76 1.7E-05 50.1 8.7 26 103-128 38-63 (563)
333 TIGR00416 sms DNA repair prote 91.5 1.6 3.4E-05 46.4 10.9 51 103-155 94-144 (454)
334 TIGR01242 26Sp45 26S proteasom 91.5 0.37 7.9E-06 49.9 6.1 26 101-126 154-179 (364)
335 TIGR03346 chaperone_ClpB ATP-d 91.5 0.72 1.6E-05 53.4 9.0 41 74-127 178-218 (852)
336 KOG0734 AAA+-type ATPase conta 91.2 2.1 4.6E-05 45.0 10.8 22 103-124 337-358 (752)
337 PRK05986 cob(I)alamin adenolsy 91.2 1.6 3.4E-05 40.1 9.0 55 228-282 111-169 (191)
338 PRK13826 Dtr system oriT relax 91.1 2 4.4E-05 50.3 11.9 58 69-146 381-438 (1102)
339 PRK11034 clpA ATP-dependent Cl 91.1 1.2 2.5E-05 50.5 9.9 25 103-127 207-231 (758)
340 PHA03368 DNA packaging termina 91.0 0.97 2.1E-05 49.1 8.6 52 103-154 254-306 (738)
341 PRK14953 DNA polymerase III su 91.0 1.2 2.6E-05 47.7 9.5 24 105-128 40-63 (486)
342 PRK05563 DNA polymerase III su 90.9 1.6 3.4E-05 47.8 10.5 26 103-128 38-63 (559)
343 PRK06904 replicative DNA helic 90.9 3.8 8.2E-05 43.8 13.1 58 103-161 221-278 (472)
344 PF02702 KdpD: Osmosensitive K 90.8 0.99 2.2E-05 41.3 7.3 29 105-133 7-35 (211)
345 TIGR00643 recG ATP-dependent D 90.7 1.8 3.8E-05 48.5 10.9 102 417-521 263-366 (630)
346 PRK12727 flagellar biosynthesi 90.6 3.9 8.4E-05 43.8 12.5 39 102-140 349-387 (559)
347 COG1419 FlhF Flagellar GTP-bin 90.6 3.5 7.5E-05 42.3 11.6 129 103-287 203-340 (407)
348 TIGR00595 priA primosomal prot 90.3 1.8 4E-05 46.7 10.2 95 418-520 5-101 (505)
349 PRK08506 replicative DNA helic 90.3 2.5 5.5E-05 45.3 11.2 56 103-160 192-247 (472)
350 PRK14965 DNA polymerase III su 90.3 1.4 3.1E-05 48.4 9.5 25 104-128 39-63 (576)
351 PRK13341 recombination factor 90.3 1.8 3.9E-05 48.7 10.4 24 103-126 52-75 (725)
352 TIGR02397 dnaX_nterm DNA polym 90.2 2.1 4.5E-05 44.1 10.3 25 104-128 37-61 (355)
353 PRK10416 signal recognition pa 90.1 2.9 6.3E-05 42.1 10.8 37 103-141 114-150 (318)
354 PF05707 Zot: Zonular occluden 89.9 0.22 4.9E-06 46.2 2.6 23 107-129 4-27 (193)
355 cd03115 SRP The signal recogni 89.9 2.4 5.2E-05 38.4 9.4 25 106-130 3-27 (173)
356 PRK05896 DNA polymerase III su 89.8 2.4 5.2E-05 46.2 10.5 27 103-129 38-64 (605)
357 cd00984 DnaB_C DnaB helicase C 89.6 7.9 0.00017 37.3 13.3 38 103-141 13-50 (242)
358 TIGR02655 circ_KaiC circadian 89.6 2.3 5E-05 45.8 10.3 53 102-156 262-314 (484)
359 cd01122 GP4d_helicase GP4d_hel 89.5 6.3 0.00014 38.8 12.8 51 103-154 30-80 (271)
360 CHL00176 ftsH cell division pr 89.4 1.4 3E-05 48.8 8.5 24 103-126 216-239 (638)
361 TIGR00665 DnaB replicative DNA 89.3 6.1 0.00013 42.0 13.3 52 103-155 195-246 (434)
362 TIGR00635 ruvB Holliday juncti 89.3 1.5 3.2E-05 44.1 8.2 25 103-127 30-54 (305)
363 PRK13833 conjugal transfer pro 89.2 0.93 2E-05 45.6 6.4 50 228-283 211-260 (323)
364 PRK11054 helD DNA helicase IV; 89.1 0.7 1.5E-05 51.7 6.0 66 68-154 195-263 (684)
365 PRK06964 DNA polymerase III su 89.0 2.9 6.3E-05 42.5 9.8 48 70-131 2-49 (342)
366 KOG0651 26S proteasome regulat 89.0 0.53 1.1E-05 45.8 4.2 57 94-155 157-213 (388)
367 TIGR03600 phage_DnaB phage rep 88.9 3.7 8.1E-05 43.4 11.2 50 103-153 194-243 (421)
368 TIGR00708 cobA cob(I)alamin ad 88.9 0.26 5.7E-06 44.3 2.1 53 228-280 93-149 (173)
369 PRK05580 primosome assembly pr 88.7 3.1 6.7E-05 46.9 10.8 95 418-520 170-266 (679)
370 PRK14954 DNA polymerase III su 88.6 1.7 3.7E-05 47.9 8.5 45 73-129 20-64 (620)
371 PRK08840 replicative DNA helic 88.6 3.8 8.2E-05 43.7 10.9 52 103-155 217-268 (464)
372 PRK14712 conjugal transfer nic 88.6 2.9 6.3E-05 50.8 10.9 65 65-146 831-897 (1623)
373 COG1066 Sms Predicted ATP-depe 88.5 2.6 5.7E-05 43.0 8.9 91 103-247 93-183 (456)
374 PF06068 TIP49: TIP49 C-termin 88.3 1 2.2E-05 45.4 5.9 55 73-141 31-85 (398)
375 PF01443 Viral_helicase1: Vira 88.2 1.4 3.1E-05 42.2 6.9 42 232-276 62-103 (234)
376 PHA00012 I assembly protein 88.2 1.2 2.5E-05 44.2 6.1 33 107-143 5-37 (361)
377 PRK13709 conjugal transfer nic 88.2 3.3 7.1E-05 51.1 11.1 67 63-146 961-1029(1747)
378 TIGR01241 FtsH_fam ATP-depende 88.0 0.73 1.6E-05 49.9 5.2 25 102-126 87-111 (495)
379 COG2812 DnaX DNA polymerase II 88.0 1.2 2.7E-05 47.4 6.7 37 231-270 118-157 (515)
380 PRK05748 replicative DNA helic 88.0 4.6 9.9E-05 43.1 11.2 50 103-153 203-252 (448)
381 TIGR03877 thermo_KaiC_1 KaiC d 87.9 1.7 3.7E-05 41.9 7.2 53 102-156 20-72 (237)
382 PRK04132 replication factor C 87.9 2.7 5.8E-05 47.9 9.6 37 233-272 631-671 (846)
383 PRK05973 replicative DNA helic 87.9 1.7 3.6E-05 41.6 6.9 52 102-155 63-114 (237)
384 TIGR01425 SRP54_euk signal rec 87.9 6.7 0.00015 41.1 11.9 36 104-141 101-136 (429)
385 PRK07004 replicative DNA helic 87.8 3.2 7E-05 44.3 9.8 50 103-153 213-262 (460)
386 PF03796 DnaB_C: DnaB-like hel 87.8 1.8 3.9E-05 42.3 7.5 44 103-147 19-62 (259)
387 TIGR00678 holB DNA polymerase 87.8 1.7 3.7E-05 40.1 6.9 27 103-129 14-40 (188)
388 COG3973 Superfamily I DNA and 87.8 1.3 2.8E-05 47.2 6.5 48 103-150 226-277 (747)
389 PRK06305 DNA polymerase III su 87.7 4 8.7E-05 43.4 10.4 45 73-129 21-65 (451)
390 TIGR00580 mfd transcription-re 87.7 4.2 9.1E-05 47.2 11.3 102 416-520 478-581 (926)
391 PRK12724 flagellar biosynthesi 87.7 6 0.00013 41.2 11.2 34 106-140 226-259 (432)
392 TIGR00064 ftsY signal recognit 87.7 6.6 0.00014 38.6 11.2 37 103-141 72-108 (272)
393 PRK06620 hypothetical protein; 87.7 3.8 8.3E-05 38.7 9.3 35 234-270 87-122 (214)
394 COG1222 RPT1 ATP-dependent 26S 87.4 0.54 1.2E-05 46.8 3.3 49 98-151 180-228 (406)
395 PRK14950 DNA polymerase III su 87.3 2.1 4.6E-05 47.3 8.3 24 105-128 40-63 (585)
396 COG1224 TIP49 DNA helicase TIP 87.3 0.57 1.2E-05 46.5 3.4 27 101-127 63-89 (450)
397 PRK06731 flhF flagellar biosyn 87.2 7.3 0.00016 38.2 11.1 49 103-153 75-127 (270)
398 PHA03372 DNA packaging termina 87.1 1.8 3.8E-05 46.6 7.1 55 106-160 205-264 (668)
399 TIGR01243 CDC48 AAA family ATP 87.1 1.4 3.1E-05 50.2 7.1 26 101-126 210-235 (733)
400 cd00561 CobA_CobO_BtuR ATP:cor 86.8 6.3 0.00014 35.1 9.5 51 229-279 92-146 (159)
401 TIGR02012 tigrfam_recA protein 86.8 2.6 5.5E-05 42.4 7.8 43 103-147 55-97 (321)
402 cd01131 PilT Pilus retraction 86.8 2.1 4.5E-05 39.9 6.9 23 105-127 3-25 (198)
403 TIGR00959 ffh signal recogniti 86.7 5.2 0.00011 42.0 10.4 38 103-141 99-136 (428)
404 KOG0780 Signal recognition par 86.6 2.5 5.4E-05 42.6 7.4 50 105-156 103-152 (483)
405 PF02456 Adeno_IVa2: Adenoviru 86.5 1.4 3.1E-05 42.9 5.5 51 104-154 88-144 (369)
406 KOG0921 Dosage compensation co 86.4 2.7 5.8E-05 46.9 8.1 131 103-270 393-535 (1282)
407 COG0541 Ffh Signal recognition 86.4 3.3 7.2E-05 42.6 8.4 52 103-156 100-151 (451)
408 TIGR03880 KaiC_arch_3 KaiC dom 86.4 2.2 4.8E-05 40.6 7.0 52 103-156 16-67 (224)
409 COG1702 PhoH Phosphate starvat 86.3 2.2 4.8E-05 42.4 6.9 40 234-275 245-284 (348)
410 TIGR02640 gas_vesic_GvpN gas v 86.3 2 4.3E-05 42.1 6.7 23 103-125 21-43 (262)
411 PRK14970 DNA polymerase III su 86.2 2.7 5.9E-05 43.5 8.1 43 73-127 21-63 (367)
412 PRK05636 replicative DNA helic 86.1 12 0.00026 40.4 13.0 50 104-154 266-315 (505)
413 PRK07399 DNA polymerase III su 86.1 12 0.00027 37.6 12.3 28 103-130 26-53 (314)
414 PRK10867 signal recognition pa 86.0 5.2 0.00011 42.0 10.0 50 103-153 100-153 (433)
415 PRK14721 flhF flagellar biosyn 86.0 7 0.00015 40.9 10.8 53 232-285 269-326 (420)
416 COG0467 RAD55 RecA-superfamily 86.0 2 4.4E-05 42.0 6.7 56 101-158 21-76 (260)
417 PRK08006 replicative DNA helic 85.8 6.4 0.00014 42.1 10.7 56 103-159 224-279 (471)
418 TIGR02782 TrbB_P P-type conjug 85.7 1.9 4.1E-05 43.1 6.3 49 228-282 200-248 (299)
419 PRK05595 replicative DNA helic 85.6 6.1 0.00013 42.1 10.5 59 103-162 201-259 (444)
420 COG0470 HolB ATPase involved i 85.5 6 0.00013 40.0 10.2 27 105-131 26-52 (325)
421 TIGR00767 rho transcription te 85.5 2.5 5.5E-05 43.5 7.1 29 102-130 167-195 (415)
422 PHA02542 41 41 helicase; Provi 85.4 11 0.00025 40.2 12.3 46 105-152 192-237 (473)
423 CHL00206 ycf2 Ycf2; Provisiona 85.4 2.7 5.8E-05 51.4 8.1 42 101-148 1628-1670(2281)
424 PRK10490 sensor protein KdpD; 85.2 1.9 4E-05 50.4 6.9 29 105-133 26-54 (895)
425 KOG0744 AAA+-type ATPase [Post 85.1 4.6 0.0001 39.8 8.2 81 65-155 149-233 (423)
426 COG3972 Superfamily I DNA and 85.0 7.4 0.00016 40.7 10.0 44 112-155 185-229 (660)
427 KOG0730 AAA+-type ATPase [Post 85.0 2.2 4.7E-05 46.1 6.5 49 101-155 466-515 (693)
428 PRK06067 flagellar accessory p 85.0 2.8 6.2E-05 40.2 7.1 54 101-156 23-76 (234)
429 PRK10689 transcription-repair 84.9 6.6 0.00014 46.9 11.1 101 416-519 627-729 (1147)
430 PRK06321 replicative DNA helic 84.7 14 0.00031 39.5 12.6 51 103-154 226-276 (472)
431 PRK08699 DNA polymerase III su 84.7 8.3 0.00018 39.0 10.5 46 70-129 2-47 (325)
432 TIGR03881 KaiC_arch_4 KaiC dom 84.7 3.3 7.2E-05 39.6 7.4 52 102-155 19-70 (229)
433 PF06309 Torsin: Torsin; Inte 84.5 4.9 0.00011 34.0 7.2 85 65-156 22-113 (127)
434 PRK14723 flhF flagellar biosyn 84.5 8.7 0.00019 43.3 11.2 50 104-153 186-239 (767)
435 KOG0727 26S proteasome regulat 84.4 2.4 5.1E-05 40.0 5.7 27 100-126 186-212 (408)
436 PRK14971 DNA polymerase III su 84.1 10 0.00022 42.1 11.6 26 103-128 39-64 (614)
437 PHA00350 putative assembly pro 84.0 2.6 5.6E-05 43.5 6.5 25 107-131 5-30 (399)
438 COG1198 PriA Primosomal protei 84.0 3 6.5E-05 46.6 7.4 124 358-519 195-320 (730)
439 TIGR02760 TraI_TIGR conjugativ 83.8 8.8 0.00019 48.6 12.1 58 69-145 429-486 (1960)
440 PRK04328 hypothetical protein; 83.8 3.3 7.2E-05 40.2 7.0 53 102-156 22-74 (249)
441 PRK14873 primosome assembly pr 83.5 5.2 0.00011 44.6 9.1 95 420-521 170-266 (665)
442 TIGR02760 TraI_TIGR conjugativ 83.4 9.7 0.00021 48.3 12.2 62 68-146 1018-1081(1960)
443 KOG1942 DNA helicase, TBP-inte 83.2 1.5 3.3E-05 42.3 4.1 47 102-154 63-109 (456)
444 PRK12726 flagellar biosynthesi 83.2 28 0.00062 35.8 13.3 51 102-154 205-259 (407)
445 PRK09354 recA recombinase A; P 83.1 5.1 0.00011 40.7 8.1 43 103-147 60-102 (349)
446 PRK09087 hypothetical protein; 83.1 5.8 0.00012 37.8 8.1 36 234-269 89-125 (226)
447 PRK05564 DNA polymerase III su 82.7 6.2 0.00013 39.8 8.7 26 103-128 26-51 (313)
448 TIGR01547 phage_term_2 phage t 82.7 4.2 9.2E-05 42.6 7.8 49 106-154 4-55 (396)
449 PF03354 Terminase_1: Phage Te 82.6 23 0.0005 38.1 13.5 39 103-141 22-62 (477)
450 cd01129 PulE-GspE PulE/GspE Th 82.5 2.8 6.1E-05 41.0 5.9 42 69-127 63-104 (264)
451 COG0630 VirB11 Type IV secreto 82.4 2.3 4.9E-05 42.8 5.3 50 228-284 213-262 (312)
452 PRK06995 flhF flagellar biosyn 82.0 13 0.00028 39.7 10.9 37 104-140 257-293 (484)
453 PRK07773 replicative DNA helic 81.9 13 0.00029 43.4 12.0 55 104-159 218-272 (886)
454 PF05127 Helicase_RecD: Helica 81.8 0.83 1.8E-05 41.4 1.7 33 232-270 90-123 (177)
455 KOG1133 Helicase of the DEAD s 81.5 2.5 5.4E-05 45.8 5.3 49 68-131 14-62 (821)
456 COG1474 CDC6 Cdc6-related prot 81.3 6.1 0.00013 40.7 8.0 53 69-133 20-72 (366)
457 TIGR03819 heli_sec_ATPase heli 81.0 18 0.00038 37.0 11.2 49 228-282 249-297 (340)
458 COG2842 Uncharacterized ATPase 80.9 8.1 0.00018 37.8 8.1 39 230-271 163-203 (297)
459 COG1200 RecG RecG-like helicas 80.6 23 0.0005 38.9 12.1 92 421-519 294-391 (677)
460 PLN00020 ribulose bisphosphate 80.0 1.6 3.5E-05 44.2 3.1 50 101-155 146-195 (413)
461 TIGR03575 selen_PSTK_euk L-ser 79.6 11 0.00023 38.3 9.0 40 231-270 125-164 (340)
462 KOG0733 Nuclear AAA ATPase (VC 79.3 9.2 0.0002 41.2 8.5 27 101-127 221-247 (802)
463 TIGR03878 thermo_KaiC_2 KaiC d 79.3 2.9 6.2E-05 40.9 4.7 37 103-141 36-72 (259)
464 PRK10733 hflB ATP-dependent me 78.8 5.8 0.00012 44.4 7.5 24 103-126 185-208 (644)
465 COG0305 DnaB Replicative DNA h 78.8 14 0.00029 38.8 9.6 53 103-156 196-248 (435)
466 TIGR03499 FlhF flagellar biosy 78.7 3.2 7E-05 41.1 5.0 39 103-141 194-232 (282)
467 COG3598 RepA RecA-family ATPas 78.7 10 0.00022 37.5 8.0 53 103-155 89-153 (402)
468 PHA03333 putative ATPase subun 78.6 14 0.00031 40.7 9.9 50 105-155 189-239 (752)
469 KOG0726 26S proteasome regulat 78.6 1.7 3.6E-05 42.0 2.7 27 99-125 215-241 (440)
470 PF05970 PIF1: PIF1-like helic 78.6 4.4 9.5E-05 41.9 6.1 62 70-146 2-63 (364)
471 COG2804 PulE Type II secretory 78.2 3.3 7.2E-05 43.6 4.9 44 68-128 240-283 (500)
472 TIGR02655 circ_KaiC circadian 78.2 5.8 0.00013 42.7 7.1 57 101-158 19-75 (484)
473 KOG0737 AAA+-type ATPase [Post 77.8 3.8 8.2E-05 41.2 5.0 49 102-155 126-174 (386)
474 PF05673 DUF815: Protein of un 77.8 8.2 0.00018 36.9 7.0 60 71-145 32-91 (249)
475 KOG0731 AAA+-type ATPase conta 77.0 1.8 4E-05 47.9 2.8 22 103-124 344-365 (774)
476 PF07015 VirC1: VirC1 protein; 76.8 6.6 0.00014 37.1 6.0 39 113-153 12-52 (231)
477 KOG0652 26S proteasome regulat 76.6 2.9 6.2E-05 39.7 3.6 27 100-126 202-228 (424)
478 KOG2028 ATPase related to the 76.2 4 8.6E-05 40.9 4.6 35 234-270 224-258 (554)
479 PTZ00361 26 proteosome regulat 76.1 7.3 0.00016 41.1 6.9 43 101-148 215-257 (438)
480 KOG1807 Helicases [Replication 76.1 4.4 9.4E-05 44.5 5.2 67 69-154 378-449 (1025)
481 CHL00195 ycf46 Ycf46; Provisio 75.2 3.1 6.8E-05 44.5 3.9 27 101-127 257-283 (489)
482 PF12846 AAA_10: AAA-like doma 74.7 6.2 0.00013 39.3 5.9 43 104-148 2-44 (304)
483 TIGR03345 VI_ClpV1 type VI sec 74.7 13 0.00028 43.1 9.0 48 73-128 570-621 (852)
484 PF07726 AAA_3: ATPase family 74.6 2.4 5.2E-05 36.0 2.3 22 106-127 2-23 (131)
485 smart00763 AAA_PrkA PrkA AAA d 74.6 11 0.00024 38.4 7.4 27 103-129 78-104 (361)
486 TIGR02533 type_II_gspE general 74.6 4.1 8.9E-05 43.7 4.7 42 68-127 224-266 (486)
487 PRK10436 hypothetical protein; 74.2 5.2 0.00011 42.5 5.3 42 69-127 201-242 (462)
488 KOG0728 26S proteasome regulat 73.7 4.6 9.9E-05 38.1 4.1 50 99-154 177-227 (404)
489 PRK09302 circadian clock prote 73.6 9.6 0.00021 41.5 7.4 54 102-156 30-83 (509)
490 cd01394 radB RadB. The archaea 73.5 7.1 0.00015 36.9 5.6 35 104-140 20-54 (218)
491 PF00437 T2SE: Type II/IV secr 73.5 4.4 9.5E-05 39.9 4.3 51 227-283 192-242 (270)
492 PRK11331 5-methylcytosine-spec 73.4 7.3 0.00016 40.9 5.9 25 103-127 194-218 (459)
493 cd01128 rho_factor Transcripti 73.2 8.1 0.00018 37.4 5.9 23 102-124 15-37 (249)
494 PRK09302 circadian clock prote 73.2 9.9 0.00022 41.3 7.3 53 103-157 273-325 (509)
495 CHL00095 clpC Clp protease ATP 73.1 12 0.00027 43.3 8.4 51 73-128 513-564 (821)
496 COG1223 Predicted ATPase (AAA+ 72.8 6.5 0.00014 37.5 4.9 43 103-151 151-194 (368)
497 TIGR00390 hslU ATP-dependent p 72.8 7.6 0.00016 40.4 5.8 25 103-127 47-71 (441)
498 PTZ00293 thymidine kinase; Pro 72.7 5.6 0.00012 37.2 4.5 36 106-143 7-42 (211)
499 PRK09361 radB DNA repair and r 72.5 7.3 0.00016 37.1 5.5 38 103-142 23-60 (225)
500 COG2205 KdpD Osmosensitive K+ 72.5 35 0.00075 38.4 10.9 30 104-133 23-52 (890)
No 1
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=1.2e-92 Score=719.22 Aligned_cols=447 Identities=28% Similarity=0.327 Sum_probs=392.4
Q ss_pred cChhHH-hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHH-hCCCCCcEEE
Q 006698 62 VPRDVR-KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMK-LHPRCRPVII 139 (635)
Q Consensus 62 ~p~~l~-~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~-~~~~~~~LIv 139 (635)
.|..++ ..|||||.+|++|+...+..|+ +|||||+||+|||+|+|+++.++.. .+..+|.||+
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~engi---------------ngILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi 223 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENGI---------------NGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVI 223 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcCc---------------ccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 566777 8999999999999999887754 8999999999999999999987766 4456788999
Q ss_pred eCccchHHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHh
Q 006698 140 APRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219 (635)
Q Consensus 140 ~P~~l~~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~ 219 (635)
||.|++.||.+||.+|.|+++++.+.|.... +. ....... ....++|+||||++..+.
T Consensus 224 ~P~StL~NW~~Ef~rf~P~l~~~~~~Gdk~e-----R~-~~~r~~~----------------~~~~fdV~iTsYEi~i~d 281 (971)
T KOG0385|consen 224 APKSTLDNWMNEFKRFTPSLNVVVYHGDKEE-----RA-ALRRDIM----------------LPGRFDVCITSYEIAIKD 281 (971)
T ss_pred eeHhhHHHHHHHHHHhCCCcceEEEeCCHHH-----HH-HHHHHhh----------------ccCCCceEeehHHHHHhh
Confidence 9999999999999999999999998874311 11 1111110 123789999999998775
Q ss_pred hcchhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhh
Q 006698 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS 299 (635)
Q Consensus 220 ~~~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~ 299 (635)
.+ . +..-.|.++||||||++||.+|.+++.++.+.+.+|+++||||+||++.|||++|+|+.|.+|++.+.|..|
T Consensus 282 k~--~---lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~sw 356 (971)
T KOG0385|consen 282 KS--F---LKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSW 356 (971)
T ss_pred HH--H---HhcCCceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHH
Confidence 42 2 334469999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred hhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhh---
Q 006698 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGV--- 376 (635)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~--- 376 (635)
+... ....+.+.+.+|+..++||++||.+.++...||++.+..+++.|+..|++.|..+...
T Consensus 357 F~~~---------------~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~ 421 (971)
T KOG0385|consen 357 FDFT---------------NCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLD 421 (971)
T ss_pred Hccc---------------ccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcch
Confidence 6432 1114455789999999999999999999999999999999999999999999998652
Q ss_pred ----------hhHHHHHHHHhhhcCCCCCCCcccc-ccCccchHHHhhcccCccccchHHHHHHHHHhc--CCCeEEEEc
Q 006698 377 ----------KSFVELNYCVSLLSVHPSLLPQQFF-ESFDVDSAKLARLKLDPEAGIKTRFLLILLELS--TNEKVLVFS 443 (635)
Q Consensus 377 ----------~~~~~~~~~~~~~~~~p~l~~~~~~-~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~--~~~kviIFs 443 (635)
....+..+.+|+||+||+|+.+..+ .++..+... ...|+|+..|..+|... .|+||||||
T Consensus 422 ~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehL-------v~nSGKm~vLDkLL~~Lk~~GhRVLIFS 494 (971)
T KOG0385|consen 422 ALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHL-------VTNSGKMLVLDKLLPKLKEQGHRVLIFS 494 (971)
T ss_pred hhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHH-------HhcCcceehHHHHHHHHHhCCCeEEEeH
Confidence 2567788999999999999999665 333333322 23589999999999877 999999999
Q ss_pred CChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCC
Q 006698 444 QYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVW 523 (635)
Q Consensus 444 ~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~w 523 (635)
|++.++|+|++++.-+ |+.|++|+|+++.++|...|+.||.+++...||++||+|||.||||+.|++||+||.+|
T Consensus 495 Qmt~mLDILeDyc~~R-----~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDW 569 (971)
T KOG0385|consen 495 QMTRMLDILEDYCMLR-----GYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDW 569 (971)
T ss_pred HHHHHHHHHHHHHHhc-----CceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCC
Confidence 9999999999999887 99999999999999999999999998888999999999999999999999999999999
Q ss_pred ChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhhhccccccC
Q 006698 524 NPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSS 577 (635)
Q Consensus 524 np~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~~~~~~~~~ 577 (635)
||..+.||.+|+|||||+|+|.||||++++|||++|++++..|.++.+.|++..
T Consensus 570 NPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g 623 (971)
T KOG0385|consen 570 NPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQG 623 (971)
T ss_pred CchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccC
Confidence 999999999999999999999999999999999999999999999999999876
No 2
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.9e-91 Score=714.39 Aligned_cols=472 Identities=27% Similarity=0.375 Sum_probs=401.5
Q ss_pred eecChhHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh-CCCCCcEE
Q 006698 60 ELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVI 138 (635)
Q Consensus 60 ~~~p~~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~-~~~~~~LI 138 (635)
-.||..|...|+|||++||+|||+.+.. ..||||+||||||||+|.|+|+.++... .-.+|+||
T Consensus 196 ~~vPg~I~~~Lf~yQreGV~WL~~L~~q---------------~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLI 260 (923)
T KOG0387|consen 196 FKVPGFIWSKLFPYQREGVQWLWELYCQ---------------RAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALI 260 (923)
T ss_pred ccccHHHHHHhhHHHHHHHHHHHHHHhc---------------cCCCeecccccCccchhHHHHHHHHhhcccccCceEE
Confidence 3689999999999999999999998765 6799999999999999999999999887 45578899
Q ss_pred EeCccchHHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHH
Q 006698 139 IAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEK 218 (635)
Q Consensus 139 v~P~~l~~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~ 218 (635)
|||++++.||..|+.+|+|.++|..+++....+....... .........+. -.....|+||||+.|+.
T Consensus 261 VCP~Tii~qW~~E~~~w~p~~rv~ilh~t~s~~r~~~~~~-------~~~~~~~L~r~-----~~~~~~ilitty~~~r~ 328 (923)
T KOG0387|consen 261 VCPATIIHQWMKEFQTWWPPFRVFILHGTGSGARYDASHS-------SHKKDKLLIRK-----VATDGGILITTYDGFRI 328 (923)
T ss_pred EccHHHHHHHHHHHHHhCcceEEEEEecCCcccccccchh-------hhhhhhhheee-----ecccCcEEEEehhhhcc
Confidence 9999999999999999999999999988654332111100 00000000111 12456799999999987
Q ss_pred hhcchhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHH-
Q 006698 219 LVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR- 297 (635)
Q Consensus 219 ~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~- 297 (635)
.-.. +....|+++|+||+|++||++|+++.+++.+++.+|++|||||+||++.|||++++|+.|+.+++...|.
T Consensus 329 ~~d~-----l~~~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~ 403 (923)
T KOG0387|consen 329 QGDD-----LLGILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQ 403 (923)
T ss_pred cCcc-----cccccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHh
Confidence 5432 5566799999999999999999999999999999999999999999999999999999999999999864
Q ss_pred hhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccc-cCCCceEEEEEeCCcHHHHHHHHHHhhh
Q 006698 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQE-SLPGLRHSVVILQPDEFQKRLCKAVEGV 376 (635)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~-~lp~~~~~~v~~~~s~~q~~~y~~~~~~ 376 (635)
.|..++..+.+......... ..++....|+.++.||++||++.++.. .||.+.+.+++|.||+.|+++|..+.+.
T Consensus 404 ~f~~pI~~GgyaNAs~~qv~----~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s 479 (923)
T KOG0387|consen 404 NFEHPINRGGYANASPRQVQ----TAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNS 479 (923)
T ss_pred hhhhheeccccCCCCHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhh
Confidence 55566776666555443333 567788999999999999999999988 9999999999999999999999998775
Q ss_pred h----------hHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc--CCCeEEEEcC
Q 006698 377 K----------SFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS--TNEKVLVFSQ 444 (635)
Q Consensus 377 ~----------~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~--~~~kviIFs~ 444 (635)
. +.+.....++++||||.++....... ..-.....+++.|+|++.+..++..+ .|.||++|+|
T Consensus 480 ~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~~~~-----~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsq 554 (923)
T KOG0387|consen 480 SEVNKILNGKRNCLSGIDILRKICNHPDLLDRRDEDE-----KQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQ 554 (923)
T ss_pred HHHHHHHcCCccceechHHHHhhcCCcccccCccccc-----ccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehh
Confidence 4 33445678999999999988742111 01111225677899999999999988 8999999999
Q ss_pred ChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCC
Q 006698 445 YIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWN 524 (635)
Q Consensus 445 ~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wn 524 (635)
.+.++++|+..|... +|+.|++++|.++...|+.+|++||+ +..+.|||++|++||.|+||++||+||+|||.||
T Consensus 555 s~~mLdilE~fL~~~----~~ysylRmDGtT~~~~R~~lVd~Fne-~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWN 629 (923)
T KOG0387|consen 555 SRQMLDILESFLRRA----KGYSYLRMDGTTPAALRQKLVDRFNE-DESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWN 629 (923)
T ss_pred HHHHHHHHHHHHHhc----CCceEEEecCCCccchhhHHHHhhcC-CCceEEEEEEecccccccccccCceEEEECCCCC
Confidence 999999999999942 29999999999999999999999997 4569999999999999999999999999999999
Q ss_pred hhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhhhccccccC
Q 006698 525 PFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSS 577 (635)
Q Consensus 525 p~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~~~~~~~~~ 577 (635)
|+.+.||..|+||+||+|+|.||||++.|||||++|.+|..|..|.+.++.+.
T Consensus 630 PStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p 682 (923)
T KOG0387|consen 630 PSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKNP 682 (923)
T ss_pred CccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHHHHHHhcCH
Confidence 99999999999999999999999999999999999999999999999888654
No 3
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=5.1e-92 Score=747.51 Aligned_cols=514 Identities=24% Similarity=0.325 Sum_probs=423.8
Q ss_pred cccCCCCCCCCcchhhhhhcCCCCCcc---ccccCCCC--CCCCCCCCCCCCcCCCCceeeecChhHH-hcccHHHHHHH
Q 006698 5 KDIDPPFATSPSRRAEWREYNNVDPSF---LDDLNSRD--SGFDSQTGCDPFTHAQGTVWELVPRDVR-KKMFPHQREGF 78 (635)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~l~-~~L~p~Q~~~v 78 (635)
.+||+||.++||+.|+||+...+...+ ++.+..-. .............++.-..++..|..++ .+||+||++|+
T Consensus 300 ~eYLvKW~~LpY~e~TWE~~~~I~~~~~~~~~~~~~Re~sk~~p~~~~~~~~~rp~~~Kle~qp~~~~g~~LRdyQLeGl 379 (1373)
T KOG0384|consen 300 PEYLVKWRGLPYEECTWEDAEDIAKKAQEEIEEFQSRENSKTLPNKGCKYRPQRPRFRKLEKQPEYKGGNELRDYQLEGL 379 (1373)
T ss_pred ceeEEEecCCCcccccccchhhhhhhHHHHHHHHhhhhccccCCCCccccCccchhHHHhhcCccccccchhhhhhcccc
Confidence 579999999999999999999776533 33333211 1111111111122233333455565554 68999999999
Q ss_pred HHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC-CCCCcEEEeCccchHHHHHHHHHhcC
Q 006698 79 EFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH-PRCRPVIIAPRSMLLTWEEEFKKWGI 157 (635)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~-~~~~~LIv~P~~l~~qW~~E~~~~~~ 157 (635)
+||+..|+. +.+||||||||||||+|+++++.++...+ -.+|.|||||.|++.+|++||..|.
T Consensus 380 NWl~~~W~~---------------~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~ef~~w~- 443 (1373)
T KOG0384|consen 380 NWLLYSWYK---------------RNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWEREFETWT- 443 (1373)
T ss_pred hhHHHHHHh---------------cccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHHHHHHHh-
Confidence 999999875 67999999999999999999999988887 5577899999999999999999999
Q ss_pred CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhhhhccCCCEEE
Q 006698 158 DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFV 237 (635)
Q Consensus 158 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~~~~~~~~~vI 237 (635)
++++++++|...+. .....+..+.... .-.-.++++||||+++.+.. .+ +-...|.+++
T Consensus 444 ~mn~i~y~g~~~sr----~~i~~ye~~~~~~------------~~~lkf~~lltTye~~LkDk--~~---L~~i~w~~~~ 502 (1373)
T KOG0384|consen 444 DMNVIVYHGNLESR----QLIRQYEFYHSSN------------TKKLKFNALLTTYEIVLKDK--AE---LSKIPWRYLL 502 (1373)
T ss_pred hhceeeeecchhHH----HHHHHHHheecCC------------ccccccceeehhhHHHhccH--hh---hccCCcceee
Confidence 88888888744332 1221122111110 01136789999999987654 22 4445699999
Q ss_pred EeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhhhhHhhhhhhhhhhhh
Q 006698 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGR 317 (635)
Q Consensus 238 vDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (635)
|||||++||..|.++..+..++..+++++||||+||++.|||+|++|+.|+-|.....|..-..
T Consensus 503 vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~---------------- 566 (1373)
T KOG0384|consen 503 VDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFD---------------- 566 (1373)
T ss_pred ecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhc----------------
Confidence 9999999999999999999999999999999999999999999999999998877766322111
Q ss_pred ccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhh-------------hHHHHHH
Q 006698 318 CANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVK-------------SFVELNY 384 (635)
Q Consensus 318 ~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~-------------~~~~~~~ 384 (635)
......+..|+..|.|+++||.++++.+.||++.+.++.|+||+.|+++|+.++..+ +.++..+
T Consensus 567 ---~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimm 643 (1373)
T KOG0384|consen 567 ---EETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMM 643 (1373)
T ss_pred ---chhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHH
Confidence 144566889999999999999999999999999999999999999999999998743 7889999
Q ss_pred HHhhhcCCCCCCCccccccCccchH--HHhhcccCccccchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhh
Q 006698 385 CVSLLSVHPSLLPQQFFESFDVDSA--KLARLKLDPEAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRF 460 (635)
Q Consensus 385 ~~~~~~~~p~l~~~~~~~~~~~~~~--~l~~~~~~~~~s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~ 460 (635)
.+++|||||+|+.+........-.. .-..+......|+|+-.|..+|... .|+|||||||.+.++|+|+++|..+
T Consensus 644 ELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r- 722 (1373)
T KOG0384|consen 644 ELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLR- 722 (1373)
T ss_pred HHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHc-
Confidence 9999999999999874443321110 0122333355799999999998877 8899999999999999999999998
Q ss_pred cccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCC
Q 006698 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQ 540 (635)
Q Consensus 461 ~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ 540 (635)
|++|.+|+|++..+-|+.+|+.||.++++.+|||+||+|||.||||+.|++||+||.+|||..+.||.+|||||||
T Consensus 723 ----~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQ 798 (1373)
T KOG0384|consen 723 ----GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQ 798 (1373)
T ss_pred ----CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEEEEeCCChHHHHHHHHHHhhhhhccccccCCC
Q 006698 541 KRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDG 579 (635)
Q Consensus 541 ~~~V~vy~li~~~tiEe~i~~~~~~K~~~~~~~~~~~~~ 579 (635)
++.|.||||++++|+|+.|++++..|+.|..+|++.++.
T Consensus 799 kk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t 837 (1373)
T KOG0384|consen 799 KKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDT 837 (1373)
T ss_pred cceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhcc
Confidence 999999999999999999999999999999999998876
No 4
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=1.5e-85 Score=691.48 Aligned_cols=529 Identities=34% Similarity=0.494 Sum_probs=404.6
Q ss_pred CcCCCCceeeecChhHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh
Q 006698 51 FTHAQGTVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL 130 (635)
Q Consensus 51 ~~~~~~~~~~~~p~~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~ 130 (635)
.....+.+|...| .++..|||||++|++|||+++.+-+.. ...+|||+||+||+|||+++|+++..+++.
T Consensus 221 k~~~~~v~v~~dP-~l~~~LrPHQ~EG~~FL~knl~g~~~~---------~~~~GCImAd~~GlGKTlq~IsflwtlLrq 290 (776)
T KOG0390|consen 221 KDKFSGVHVVIDP-LLKKILRPHQREGFEFLYKNLAGLIRP---------KNSGGCIMADEPGLGKTLQCISFIWTLLRQ 290 (776)
T ss_pred CCcCccceEEecc-cHhhhcCchHHHHHHHHHhhhhccccc---------CCCCceEeeCCCCcchHHHHHHHHHHHHHh
Confidence 3444557788888 999999999999999999999874311 257899999999999999999999999999
Q ss_pred CCC-----CCcEEEeCccchHHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccC
Q 006698 131 HPR-----CRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMG 205 (635)
Q Consensus 131 ~~~-----~~~LIv~P~~l~~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (635)
+|. .++|||||++|+.+|.+||.+|... ..++.....+.....+.....-. .+..-.-.
T Consensus 291 ~P~~~~~~~k~lVV~P~sLv~nWkkEF~KWl~~---~~i~~l~~~~~~~~~w~~~~sil-------------~~~~~~~~ 354 (776)
T KOG0390|consen 291 FPQAKPLINKPLVVAPSSLVNNWKKEFGKWLGN---HRINPLDFYSTKKSSWIKLKSIL-------------FLGYKQFT 354 (776)
T ss_pred CcCccccccccEEEccHHHHHHHHHHHHHhccc---cccceeeeecccchhhhhhHHHH-------------Hhhhhhee
Confidence 999 8999999999999999999999653 22333333333332111000000 00000123
Q ss_pred CCeEEeeHHHHHHhhcchhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhh
Q 006698 206 TGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLV 285 (635)
Q Consensus 206 ~~vvi~ty~~~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l 285 (635)
.-|++.||++++..+ ..++...++++|+||+|++||..+.++++|.++++++|++|||||+||++.|+|++++|+
T Consensus 355 ~~vli~sye~~~~~~-----~~il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fv 429 (776)
T KOG0390|consen 355 TPVLIISYETASDYC-----RKILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFV 429 (776)
T ss_pred EEEEeccHHHHHHHH-----HHHhcCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhc
Confidence 468999999998654 447788899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHH-HhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcH
Q 006698 286 RQEFGEVLRTV-RKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDE 364 (635)
Q Consensus 286 ~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~ 364 (635)
+|++++....+ +.|..++..+........... . .+.+++|+.++..|++||+.+.+.+.||++.++++.|.+++
T Consensus 430 rP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~----~-~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~ 504 (776)
T KOG0390|consen 430 RPGFLGSISSFKKKFEIPILRGRDADASEEDRE----R-EERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTP 504 (776)
T ss_pred ChhhccchHHHHHHhhcccccccCCCcchhhhh----h-HHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcH
Confidence 99999999885 455555555444333322222 1 55599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhh--h-----hHHHHHHHHhhhcCCCCCCCccc-cccC--ccchH------HHhhcccCccccchHHHHH
Q 006698 365 FQKRLCKAVEGV--K-----SFVELNYCVSLLSVHPSLLPQQF-FESF--DVDSA------KLARLKLDPEAGIKTRFLL 428 (635)
Q Consensus 365 ~q~~~y~~~~~~--~-----~~~~~~~~~~~~~~~p~l~~~~~-~~~~--~~~~~------~l~~~~~~~~~s~K~~~l~ 428 (635)
.|..+|+.+... . ..+.....+.++|+||.|+.... .+.. ..... .+.....+...+.|+..|.
T Consensus 505 ~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~ 584 (776)
T KOG0390|consen 505 IQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLV 584 (776)
T ss_pred HHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHH
Confidence 999999999886 3 26677888999999999986221 1110 00111 1111122233466777777
Q ss_pred HHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCccccc
Q 006698 429 ILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGI 508 (635)
Q Consensus 429 ~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~Gl 508 (635)
.++.. .++|+++|++++.....+.+.+.+.++|. |+.+++++|+++..+|+.+++.||++.+..+|||+|++|||+||
T Consensus 585 ~ll~~-~~ek~~~~~v~Isny~~tldl~e~~~~~~-g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~Gi 662 (776)
T KOG0390|consen 585 FLLEV-IREKLLVKSVLISNYTQTLDLFEQLCRWR-GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGL 662 (776)
T ss_pred HHHHH-HhhhcceEEEEeccHHHHHHHHHHHHhhc-CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCce
Confidence 77633 34445555544444444444444455555 99999999999999999999999998887899999999999999
Q ss_pred ccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhhhccccccCCCCCCCCCc-C
Q 006698 509 NLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGGGNDQTT-A 587 (635)
Q Consensus 509 nL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~~~~~~~~~~~~~~~~~~-~ 587 (635)
||.+|++||+||++|||+.+.||++||||.||+|+|+||||++.||+||++|++|..|..+.+.+++......-.... .
T Consensus 663 nLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~~~~~~~~~~~~ 742 (776)
T KOG0390|consen 663 NLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEEEDVEKHFFTED 742 (776)
T ss_pred eecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEecccccccccchHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999987664332221 2
Q ss_pred CccchHHHHHHHHHhcCCCchhHHHhhcCCCc
Q 006698 588 SEPLEDKILEEMAQLYNNPSETLINAIIPQPK 619 (635)
Q Consensus 588 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 619 (635)
.....+..++++.+. ++....++.+...++
T Consensus 743 ~~~lf~~~~~~~~e~--~~~~~~~~~~~~~~~ 772 (776)
T KOG0390|consen 743 LKTLFDLELDTIVET--HKLKKSKDCLLKNDK 772 (776)
T ss_pred HHHHHhhhccccccc--hhhhhhHHHhhcccc
Confidence 223344444555444 444545555554443
No 5
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=7.6e-84 Score=711.98 Aligned_cols=454 Identities=24% Similarity=0.299 Sum_probs=383.1
Q ss_pred ceeeecChhHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh-CCCCC
Q 006698 57 TVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCR 135 (635)
Q Consensus 57 ~~~~~~p~~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~-~~~~~ 135 (635)
......|..+..+|||||++|++||+..+.. +.||||||+||+|||+|+|+++..+... +..+|
T Consensus 157 ~~l~~qP~~i~~~Lr~YQleGlnWLi~l~~~---------------g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp 221 (1033)
T PLN03142 157 TRLLVQPSCIKGKMRDYQLAGLNWLIRLYEN---------------GINGILADEMGLGKTLQTISLLGYLHEYRGITGP 221 (1033)
T ss_pred ceeccCChHhccchHHHHHHHHHHHHHHHhc---------------CCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCC
Confidence 3455678899999999999999999886544 5689999999999999999999876653 44568
Q ss_pred cEEEeCccchHHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHH
Q 006698 136 PVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL 215 (635)
Q Consensus 136 ~LIv~P~~l~~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~ 215 (635)
+|||||++++.||.+||.+|+|.++++.+++.... ... ..... .....++|+||||++
T Consensus 222 ~LIVvP~SlL~nW~~Ei~kw~p~l~v~~~~G~~~e-----R~~-~~~~~----------------~~~~~~dVvITSYe~ 279 (1033)
T PLN03142 222 HMVVAPKSTLGNWMNEIRRFCPVLRAVKFHGNPEE-----RAH-QREEL----------------LVAGKFDVCVTSFEM 279 (1033)
T ss_pred EEEEeChHHHHHHHHHHHHHCCCCceEEEeCCHHH-----HHH-HHHHH----------------hcccCCCcceecHHH
Confidence 89999999999999999999999888877653211 110 00000 001357899999999
Q ss_pred HHHhhcchhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHH
Q 006698 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRT 295 (635)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~ 295 (635)
+.+.. ..+....|++|||||||++||..|+++++++.+++.++|+|||||++|++.|||++++||.|+.+++...
T Consensus 280 l~~e~-----~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~ 354 (1033)
T PLN03142 280 AIKEK-----TALKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAET 354 (1033)
T ss_pred HHHHH-----HHhccCCCCEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHH
Confidence 87643 2244557999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhh
Q 006698 296 VRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEG 375 (635)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~ 375 (635)
|..+.... ........+..|+..+.||++||++.++...||++.+.++.|.||+.|+++|+.+..
T Consensus 355 F~~~f~~~---------------~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~ 419 (1033)
T PLN03142 355 FDEWFQIS---------------GENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQ 419 (1033)
T ss_pred HHHHHccc---------------cccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHH
Confidence 66554321 011334567889999999999999999999999999999999999999999998864
Q ss_pred h-----------hhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc--CCCeEEEE
Q 006698 376 V-----------KSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS--TNEKVLVF 442 (635)
Q Consensus 376 ~-----------~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~--~~~kviIF 442 (635)
. ...+...+.++++|+||.++............ ......|+|+..|..+|... .++|||||
T Consensus 420 k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~------e~lie~SgKl~lLdkLL~~Lk~~g~KVLIF 493 (1033)
T PLN03142 420 KDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTG------EHLVENSGKMVLLDKLLPKLKERDSRVLIF 493 (1033)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccch------hHHhhhhhHHHHHHHHHHHHHhcCCeEEee
Confidence 2 24566778899999999998765332211111 11134588999999999877 88999999
Q ss_pred cCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCC
Q 006698 443 SQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVV 522 (635)
Q Consensus 443 s~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~ 522 (635)
|+|+.++++|+++|... |+.+++|+|+++.++|+.+++.|+++++...|||+||++||+||||+.|++||+||++
T Consensus 494 SQft~~LdiLed~L~~~-----g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~d 568 (1033)
T PLN03142 494 SQMTRLLDILEDYLMYR-----GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSD 568 (1033)
T ss_pred hhHHHHHHHHHHHHHHc-----CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCC
Confidence 99999999999999886 9999999999999999999999998666678999999999999999999999999999
Q ss_pred CChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhhhccccccCC
Q 006698 523 WNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578 (635)
Q Consensus 523 wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~~~~~~~~~~ 578 (635)
|||+.+.||+||+||+||+++|+||+|+++||+|++|++++..|..+...+++.+.
T Consensus 569 WNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~g~ 624 (1033)
T PLN03142 569 WNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGR 624 (1033)
T ss_pred CChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999999999997654
No 6
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=1.4e-83 Score=679.70 Aligned_cols=482 Identities=24% Similarity=0.307 Sum_probs=399.2
Q ss_pred ecChhHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC-------CC
Q 006698 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH-------PR 133 (635)
Q Consensus 61 ~~p~~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~-------~~ 133 (635)
.||..|+.+||.||++||+|+-.--.- .=.|||||+||+|||+|++++++.-.... ..
T Consensus 967 ~Ip~pI~a~LRkYQqEGVnWLaFLnky---------------~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~ 1031 (1549)
T KOG0392|consen 967 KIPVPISAKLRKYQQEGVNWLAFLNKY---------------KLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNR 1031 (1549)
T ss_pred ccccchhHHHHHHHHhccHHHHHHHHh---------------cccceeeccccccHHHHHHHHHHHHHHhhcccchhhcc
Confidence 567779999999999999998442111 23789999999999999999887532222 34
Q ss_pred CCcEEEeCccchHHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeH
Q 006698 134 CRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSY 213 (635)
Q Consensus 134 ~~~LIv~P~~l~~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty 213 (635)
.|.|||||++|...|+.|+.+|+|-++|..+-|........+.. -++.+|+|+||
T Consensus 1032 ~PSLIVCPsTLtGHW~~E~~kf~pfL~v~~yvg~p~~r~~lR~q-------------------------~~~~~iiVtSY 1086 (1549)
T KOG0392|consen 1032 LPSLIVCPSTLTGHWKSEVKKFFPFLKVLQYVGPPAERRELRDQ-------------------------YKNANIIVTSY 1086 (1549)
T ss_pred CCeEEECCchhhhHHHHHHHHhcchhhhhhhcCChHHHHHHHhh-------------------------ccccceEEeeH
Confidence 56799999999999999999999998887776644332222111 25679999999
Q ss_pred HHHHHhhcchhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhH
Q 006698 214 RLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVL 293 (635)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~ 293 (635)
+.+++++.. +....|.++|+||+|-+||..++.+++++.|++.+|+.|||||+||++.|||++++||.|+|+|+-
T Consensus 1087 Dv~RnD~d~-----l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtE 1161 (1549)
T KOG0392|consen 1087 DVVRNDVDY-----LIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTE 1161 (1549)
T ss_pred HHHHHHHHH-----HHhcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcH
Confidence 999987633 566679999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHH-HhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHH
Q 006698 294 RTV-RKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKA 372 (635)
Q Consensus 294 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~ 372 (635)
..| .+|++++.............. .+.-++..|++.+-||++||.|+++.++||++..+..+|+|+|.|+++|+.
T Consensus 1162 KqFqsrf~kpI~asRd~K~Sske~E----aG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~d 1237 (1549)
T KOG0392|consen 1162 KQFQSRFGKPILASRDPKSSSKEQE----AGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRD 1237 (1549)
T ss_pred HHHHHHhcchhhhhcCcccchhHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHH
Confidence 885 578888877665544433322 566778999999999999999999999999999999999999999999999
Q ss_pred Hhhhh--------------------hHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcc---cCccccchHHHHHH
Q 006698 373 VEGVK--------------------SFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLK---LDPEAGIKTRFLLI 429 (635)
Q Consensus 373 ~~~~~--------------------~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~---~~~~~s~K~~~l~~ 429 (635)
+.... ..+.....+|+.|+||.++..............+.... .+...++|+.+|.+
T Consensus 1238 f~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~q 1317 (1549)
T KOG0392|consen 1238 FVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQ 1317 (1549)
T ss_pred HHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHH
Confidence 86641 24567889999999999987752221111111222222 23467999999999
Q ss_pred HHHhc----------------CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCC
Q 006698 430 LLELS----------------TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQ 493 (635)
Q Consensus 430 ~l~~~----------------~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~ 493 (635)
+|.++ .++|++||||+.+++|++++-|-+.+- +.+.|.++||++++.+|++++.+||+ ++.
T Consensus 1318 LL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~m--psVtymRLDGSVpp~~R~kiV~~FN~-Dpt 1394 (1549)
T KOG0392|consen 1318 LLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYM--PSVTYMRLDGSVPPGDRQKIVERFNE-DPT 1394 (1549)
T ss_pred HHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhc--CceeEEEecCCCCcHHHHHHHHHhcC-CCc
Confidence 99987 247999999999999999988876532 37789999999999999999999998 456
Q ss_pred cEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhhhccc
Q 006698 494 ARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMV 573 (635)
Q Consensus 494 ~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~~~~~ 573 (635)
+.|||++|.+||.|+||++|++|||++-+|||+++.||++|+||+||+|.|+|||||++||+||+++..|..|++.++.+
T Consensus 1395 IDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntv 1474 (1549)
T KOG0392|consen 1395 IDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTV 1474 (1549)
T ss_pred eeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCcCCccchHHHHHHHH
Q 006698 574 FPSSDGGGNDQTTASEPLEDKILEEMA 600 (635)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~l~~~~ 600 (635)
++..+... .....+++|+.+.
T Consensus 1475 InqqNasl------~tM~TdqLLdlF~ 1495 (1549)
T KOG0392|consen 1475 INQQNASL------ETMDTDQLLDLFT 1495 (1549)
T ss_pred Hhcccccc------cccCHHHHHHHhc
Confidence 98876632 2333466665554
No 7
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=3.1e-83 Score=653.18 Aligned_cols=461 Identities=25% Similarity=0.302 Sum_probs=376.6
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLT 147 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~q 147 (635)
.+|.|||+-||+|+.-.+..+ =+||||||||||||+|+|+|+..+.+.+..+|.|||||+|++.|
T Consensus 398 i~LkdYQlvGvNWL~Llyk~~---------------l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleN 462 (941)
T KOG0389|consen 398 IQLKDYQLVGVNWLLLLYKKK---------------LNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLEN 462 (941)
T ss_pred CcccchhhhhHHHHHHHHHcc---------------ccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHHH
Confidence 469999999999997665543 37799999999999999999999999999899999999999999
Q ss_pred HHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhh
Q 006698 148 WEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG 227 (635)
Q Consensus 148 W~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~ 227 (635)
|.+||.+|+|.++|..++|.... ++.....+... ..+++|++|||..+..-. ++.+-
T Consensus 463 WlrEf~kwCPsl~Ve~YyGSq~E---R~~lR~~i~~~------------------~~~ydVllTTY~la~~~k--dDRsf 519 (941)
T KOG0389|consen 463 WLREFAKWCPSLKVEPYYGSQDE---RRELRERIKKN------------------KDDYDVLLTTYNLAASSK--DDRSF 519 (941)
T ss_pred HHHHHHHhCCceEEEeccCcHHH---HHHHHHHHhcc------------------CCCccEEEEEeecccCCh--HHHHH
Confidence 99999999999999988875522 22221111111 247899999999876432 34444
Q ss_pred hhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHH-HHhhhhhhhHh
Q 006698 228 ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRT-VRKSGREISKA 306 (635)
Q Consensus 228 ~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~-~~~~~~~~~~~ 306 (635)
+....|++||.||+|.+||..|.+|+.++.++++.|++|||||+||++.||+++|.|+.|++|..... +..........
T Consensus 520 lk~~~~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~ 599 (941)
T KOG0389|consen 520 LKNQKFNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTS 599 (941)
T ss_pred HHhccccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCc
Confidence 45557999999999999999999999999999999999999999999999999999999998765443 22221110000
Q ss_pred hhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhh---------
Q 006698 307 KHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVK--------- 377 (635)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~--------- 377 (635)
..+... .....+++.+.+.++.||++||.+.+|.+.||++..++.+|+|+..|+++|+.+.+..
T Consensus 600 -d~d~e~------~~l~qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ 672 (941)
T KOG0389|consen 600 -DGDIEN------ALLSQERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSK 672 (941)
T ss_pred -cchhhH------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhcccccc
Confidence 000000 0022346788899999999999999999999999999999999999999999876532
Q ss_pred ----hHHHHHHHHhhhcCCCCCCCccccccC---------------c-------cch-----HHHhhc----c------c
Q 006698 378 ----SFVELNYCVSLLSVHPSLLPQQFFESF---------------D-------VDS-----AKLARL----K------L 416 (635)
Q Consensus 378 ----~~~~~~~~~~~~~~~p~l~~~~~~~~~---------------~-------~~~-----~~l~~~----~------~ 416 (635)
......+.+|++++||.|+...+.... + .+. ..+..+ . .
T Consensus 673 ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L 752 (941)
T KOG0389|consen 673 NSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQL 752 (941)
T ss_pred ccccccchHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCccccc
Confidence 113378899999999999766421100 0 000 011111 1 0
Q ss_pred ---CccccchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCC
Q 006698 417 ---DPEAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPS 491 (635)
Q Consensus 417 ---~~~~s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~ 491 (635)
..-.|+|.+.|..+|... .|+||+|||||+.++|+|+..|... |+.|.+++|++....|+.+|+.|+. +
T Consensus 753 ~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l-----~~~ylRLDGsTqV~~RQ~lId~Fn~-d 826 (941)
T KOG0389|consen 753 KDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTL-----GYKYLRLDGSTQVNDRQDLIDEFNT-D 826 (941)
T ss_pred CCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhc-----CceEEeecCCccchHHHHHHHhhcc-C
Confidence 112589999999999987 8899999999999999999999998 9999999999999999999999997 4
Q ss_pred CCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhhhc
Q 006698 492 SQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSN 571 (635)
Q Consensus 492 ~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~~~ 571 (635)
.++.|||+||+|||.||||++||+||++|.++||..+.||.+|+||+||+|+|+||+||+++||||.|++....|..+-.
T Consensus 827 ~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~ 906 (941)
T KOG0389|consen 827 KDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEA 906 (941)
T ss_pred CceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhh
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCC
Q 006698 572 MVFPSSDG 579 (635)
Q Consensus 572 ~~~~~~~~ 579 (635)
.+.++...
T Consensus 907 ~lt~~~k~ 914 (941)
T KOG0389|consen 907 DLTEDGKG 914 (941)
T ss_pred hhccCccc
Confidence 88876655
No 8
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=1.1e-79 Score=643.07 Aligned_cols=462 Identities=23% Similarity=0.326 Sum_probs=389.2
Q ss_pred eeecChhHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCC-CCCcE
Q 006698 59 WELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP-RCRPV 137 (635)
Q Consensus 59 ~~~~p~~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~-~~~~L 137 (635)
-..+|.-|...||.||..|+.||...+. ++-+||||||||||||+|+|++++++.-... -++.|
T Consensus 605 ktpvPsLLrGqLReYQkiGLdWLatLYe---------------knlNGILADEmGLGKTIQtISllAhLACeegnWGPHL 669 (1958)
T KOG0391|consen 605 KTPVPSLLRGQLREYQKIGLDWLATLYE---------------KNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHL 669 (1958)
T ss_pred ccCchHHHHHHHHHHHHhhHHHHHHHHH---------------hcccceehhhhcccchhHHHHHHHHHHhcccCCCCce
Confidence 3457878899999999999999976543 3569999999999999999999977765443 35669
Q ss_pred EEeCccchHHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccc--cCCCeEEeeHHH
Q 006698 138 IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWK--MGTGILGLSYRL 215 (635)
Q Consensus 138 Iv~P~~l~~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vvi~ty~~ 215 (635)
||||.+++.||.-||++|+|++++..+.|.....+.++. .|. +.++|+||||..
T Consensus 670 IVVpTsviLnWEMElKRwcPglKILTYyGs~kErkeKRq------------------------gW~kPnaFHVCItSYkl 725 (1958)
T KOG0391|consen 670 IVVPTSVILNWEMELKRWCPGLKILTYYGSHKERKEKRQ------------------------GWAKPNAFHVCITSYKL 725 (1958)
T ss_pred EEeechhhhhhhHHHhhhCCcceEeeecCCHHHHHHHhh------------------------cccCCCeeEEeehhhHH
Confidence 999999999999999999999999988775433332221 232 457899999998
Q ss_pred HHHhhcchhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHH
Q 006698 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRT 295 (635)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~ 295 (635)
+-... ..+....|.++|+||||++||..|++|+++..+++.+|++|||||++|++.|||+|++||.|..+.+.+.
T Consensus 726 v~qd~-----~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~ 800 (1958)
T KOG0391|consen 726 VFQDL-----TAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDI 800 (1958)
T ss_pred HHhHH-----HHHHhhccceeehhhhhhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhh
Confidence 87654 3467778999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhh
Q 006698 296 VRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEG 375 (635)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~ 375 (635)
|+.|+.....+..... ..-....+.+|++.++||++||.+.++.++||.+.+++|.|.+|.-|+.+|+.+-.
T Consensus 801 fk~wfsnPltgmiEgs--------qeyn~klV~RLHkVlrPfiLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfms 872 (1958)
T KOG0391|consen 801 FKPWFSNPLTGMIEGS--------QEYNHKLVIRLHKVLRPFILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMS 872 (1958)
T ss_pred HHHHhcCcchhhcccc--------hhhchHHHHHHHHHhHHHHHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhh
Confidence 8877654333322111 11335568899999999999999999999999999999999999999999999754
Q ss_pred h------------hhHHHHHHHHhhhcCCCCCCCcc--------------------------------------------
Q 006698 376 V------------KSFVELNYCVSLLSVHPSLLPQQ-------------------------------------------- 399 (635)
Q Consensus 376 ~------------~~~~~~~~~~~~~~~~p~l~~~~-------------------------------------------- 399 (635)
. .+.+++.+.++++||||.|+...
T Consensus 873 q~~TKetLkSGhfmsVlnilmqLrKvCNHPnLfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~ 952 (1958)
T KOG0391|consen 873 QPGTKETLKSGHFMSVLNILMQLRKVCNHPNLFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSA 952 (1958)
T ss_pred ccchhhHhhcCchhHHHHHHHHHHHHcCCCCcCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCccc
Confidence 2 26778899999999999997654
Q ss_pred --------------------------------------------------------------------------------
Q 006698 400 -------------------------------------------------------------------------------- 399 (635)
Q Consensus 400 -------------------------------------------------------------------------------- 399 (635)
T Consensus 953 vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~ 1032 (1958)
T KOG0391|consen 953 VPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQ 1032 (1958)
T ss_pred ccccchhhhhhcccccccccccccCCCCCCCccccccccccchhcccCCccccccccchhcccchheeeccccccccCcH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 006698 400 -------------------------------------------------------------------------------- 399 (635)
Q Consensus 400 -------------------------------------------------------------------------------- 399 (635)
T Consensus 1033 ~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gta 1112 (1958)
T KOG0391|consen 1033 SRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTA 1112 (1958)
T ss_pred hHhhcCCCceeeeeecccCccccccceeeeccccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchh
Confidence
Q ss_pred -------------------------------------------------------cc-----------------------
Q 006698 400 -------------------------------------------------------FF----------------------- 401 (635)
Q Consensus 400 -------------------------------------------------------~~----------------------- 401 (635)
..
T Consensus 1113 t~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iId 1192 (1958)
T KOG0391|consen 1113 TLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIID 1192 (1958)
T ss_pred hhccCCCccccccchhhHHHHHHHHHHHHHhhccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHH
Confidence 00
Q ss_pred -----------------------------------------ccCccc------hHHHhhcccCccccchHHHHHHHHHhc
Q 006698 402 -----------------------------------------ESFDVD------SAKLARLKLDPEAGIKTRFLLILLELS 434 (635)
Q Consensus 402 -----------------------------------------~~~~~~------~~~l~~~~~~~~~s~K~~~l~~~l~~~ 434 (635)
.....+ .-.+..+..-...++|++.|.-+|...
T Consensus 1193 rfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQL 1272 (1958)
T KOG0391|consen 1193 RFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQL 1272 (1958)
T ss_pred HheeecccccCCChhhcCCCCCcccchHHHHHHHHHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHH
Confidence 000000 000011112233578999999988877
Q ss_pred --CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCccccccccc
Q 006698 435 --TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512 (635)
Q Consensus 435 --~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~ 512 (635)
.|++||||+|.+.|+|+|+.+|..+ |+.|+++||+++.++|+.+.++||. |..+.|+|+||+.||+||||++
T Consensus 1273 k~eghRvLIfTQMtkmLDVLeqFLnyH-----gylY~RLDg~t~vEqRQaLmerFNa-D~RIfcfILSTrSggvGiNLtg 1346 (1958)
T KOG0391|consen 1273 KSEGHRVLIFTQMTKMLDVLEQFLNYH-----GYLYVRLDGNTSVEQRQALMERFNA-DRRIFCFILSTRSGGVGINLTG 1346 (1958)
T ss_pred HhcCceEEehhHHHHHHHHHHHHHhhc-----ceEEEEecCCccHHHHHHHHHHhcC-CCceEEEEEeccCCcccccccc
Confidence 8999999999999999999999987 9999999999999999999999998 5789999999999999999999
Q ss_pred CCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhhhccccccCC
Q 006698 513 ASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578 (635)
Q Consensus 513 a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~~~~~~~~~~ 578 (635)
|++|||||.+|||..+.||-+|+|||||+++|+|||||.+.|||++|+++...|..+-+.++++.+
T Consensus 1347 ADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkkanqKr~L~evaiqggd 1412 (1958)
T KOG0391|consen 1347 ADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKANQKRMLDEVAIQGGD 1412 (1958)
T ss_pred CceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhhhHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999999999999999999999999999988887765
No 9
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=6.8e-78 Score=604.16 Aligned_cols=469 Identities=23% Similarity=0.259 Sum_probs=391.5
Q ss_pred eeecChhHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCC-CCcE
Q 006698 59 WELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPR-CRPV 137 (635)
Q Consensus 59 ~~~~p~~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~-~~~L 137 (635)
.-..|.-++++|+.||+.|++|+...+-.|| +||||||||+|||+|+|++++.+...... +|.|
T Consensus 557 tV~qPkil~ctLKEYQlkGLnWLvnlYdqGi---------------NGILADeMGLGKTVQsisvlAhLaE~~nIwGPFL 621 (1185)
T KOG0388|consen 557 TVPQPKILKCTLKEYQLKGLNWLVNLYDQGI---------------NGILADEMGLGKTVQSISVLAHLAETHNIWGPFL 621 (1185)
T ss_pred eccCchhhhhhhHHHhhccHHHHHHHHHccc---------------cceehhhhccchhHHHHHHHHHHHHhccCCCceE
Confidence 4467888999999999999999999887765 99999999999999999999888877655 4669
Q ss_pred EEeCccchHHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHH
Q 006698 138 IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFE 217 (635)
Q Consensus 138 Iv~P~~l~~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~ 217 (635)
||+|++++.||++||.+|.|++++.-+.|.....+.-+..+ .. ..++.-..+++|+||||+++.
T Consensus 622 VVtpaStL~NWaqEisrFlP~~k~lpywGs~~eRkiLrKfw---~r-------------KnmY~rna~fhVviTSYQlvV 685 (1185)
T KOG0388|consen 622 VVTPASTLHNWAQEISRFLPSFKVLPYWGSPSERKILRKFW---NR-------------KNMYRRNAPFHVVITSYQLVV 685 (1185)
T ss_pred EeehHHHHhHHHHHHHHhCccceeecCcCChhhhHHHHHhc---ch-------------hhhhccCCCceEEEEeeeeee
Confidence 99999999999999999999999888776443322222111 11 122344568899999999876
Q ss_pred HhhcchhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHH
Q 006698 218 KLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297 (635)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~ 297 (635)
... +-+....|.+.|+|||+.+|...|.+++.+..++|+.|++||||||||+..|||++|+|+.|.+|++...|.
T Consensus 686 tDe-----ky~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFs 760 (1185)
T KOG0388|consen 686 TDE-----KYLQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFS 760 (1185)
T ss_pred chH-----HHHHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHH
Confidence 543 224455799999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhh
Q 006698 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVK 377 (635)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~ 377 (635)
+|+..-.... ...........+.+|+.+++|||+||.+.++..+|..+.+..|+|++|.-|+.+|..+...-
T Consensus 761 eWFSKdIEsh--------Ae~~~tlneqqL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~i 832 (1185)
T KOG0388|consen 761 EWFSKDIESH--------AEMNTTLNEQQLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSI 832 (1185)
T ss_pred HHHhhhhHhH--------HHhcCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHh
Confidence 7764322211 11122266788999999999999999999999999999999999999999999999998754
Q ss_pred h---HHHHHHHHhhhcCCCCCCCcccccc---------------------------------------------------
Q 006698 378 S---FVELNYCVSLLSVHPSLLPQQFFES--------------------------------------------------- 403 (635)
Q Consensus 378 ~---~~~~~~~~~~~~~~p~l~~~~~~~~--------------------------------------------------- 403 (635)
+ .....+.++++|+||.|+.......
T Consensus 833 S~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~ 912 (1185)
T KOG0388|consen 833 SSMEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGL 912 (1185)
T ss_pred hHHHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhh
Confidence 3 3346778999999999975530000
Q ss_pred ----------------------Cc--------------------------------------------------------
Q 006698 404 ----------------------FD-------------------------------------------------------- 405 (635)
Q Consensus 404 ----------------------~~-------------------------------------------------------- 405 (635)
..
T Consensus 913 ~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvL 992 (1185)
T KOG0388|consen 913 RRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVL 992 (1185)
T ss_pred HhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCee
Confidence 00
Q ss_pred ---------cchH----HH------hhcccCccccchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccC
Q 006698 406 ---------VDSA----KL------ARLKLDPEAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWRE 464 (635)
Q Consensus 406 ---------~~~~----~l------~~~~~~~~~s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~ 464 (635)
.+.. .+ ..+..-...|+|+..|.++|... .|++|++|.|.+.++++|+++|.-+
T Consensus 993 I~~ead~PeId~E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr----- 1067 (1185)
T KOG0388|consen 993 ISNEADLPEIDLENRHIPLNTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYR----- 1067 (1185)
T ss_pred eecccCCCCCCccccCcccccceecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhh-----
Confidence 0000 00 00000123489999999999877 8999999999999999999999987
Q ss_pred CceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceE
Q 006698 465 GQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVV 544 (635)
Q Consensus 465 g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V 544 (635)
|+.+.+++|+.+..+|..++..|+. +++.|||+||+|||.||||++|++|||||.+|||..+.||++|+||+||+++|
T Consensus 1068 ~Y~ylRLDGSsk~~dRrd~vrDwQ~--sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdv 1145 (1185)
T KOG0388|consen 1068 GYTYLRLDGSSKASDRRDVVRDWQA--SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDV 1145 (1185)
T ss_pred ccceEEecCcchhhHHHHHHhhccC--CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccce
Confidence 9999999999999999999999998 67999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCChHHHHHHHHHHhhhhhccccccCC
Q 006698 545 HVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578 (635)
Q Consensus 545 ~vy~li~~~tiEe~i~~~~~~K~~~~~~~~~~~~ 578 (635)
+||||+++||+||+++.+..+|..+.+.|+.|..
T Consensus 1146 tvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm~G~~ 1179 (1185)
T KOG0388|consen 1146 TVYRLITRGTVEEKVLERANQKDEVQQMVMHGNI 1179 (1185)
T ss_pred eeeeecccccHHHHHHHHhhhHHHHHHHHHcCCc
Confidence 9999999999999999999999999999997743
No 10
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=6.3e-78 Score=619.92 Aligned_cols=489 Identities=29% Similarity=0.427 Sum_probs=405.5
Q ss_pred eecChhHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC--CCCCcE
Q 006698 60 ELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH--PRCRPV 137 (635)
Q Consensus 60 ~~~p~~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~--~~~~~L 137 (635)
-.+|..+-..|.|||..||+|||++....+ ++. ..+++.||||||.||||||+|.++|++..+... ..+++|
T Consensus 659 VqV~rslv~kLKpHQv~GvqFMwd~~~eSl-----kr~-~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaL 732 (1567)
T KOG1015|consen 659 VQVHRSLVIKLKPHQVDGVQFMWDCCCESL-----KRT-KKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTAL 732 (1567)
T ss_pred hhccHhHHhhcCcccccchhHHHHHHHHHH-----Hhh-cCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEE
Confidence 367889999999999999999999987543 332 446788999999999999999999998877643 335679
Q ss_pred EEeCccchHHHHHHHHHhcCCCccc-ccCC--CCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHH
Q 006698 138 IIAPRSMLLTWEEEFKKWGIDIPFY-NLNK--PELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYR 214 (635)
Q Consensus 138 Iv~P~~l~~qW~~E~~~~~~~~~v~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~ 214 (635)
||||.+++.||..||.+|.+++... .+.. ........ .|...+..|....+|+|+.|+
T Consensus 733 vV~PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e-------------------~R~~~L~~W~~~ggVmIiGYd 793 (1567)
T KOG1015|consen 733 VVCPLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPE-------------------ERSYMLQRWQEDGGVMIIGYD 793 (1567)
T ss_pred EEcchHHHHHHHHHHHHhcccccccccceeehhhhccChH-------------------HHHHHHHHHHhcCCEEEEehH
Confidence 9999999999999999998753222 1111 11111111 122356678899999999999
Q ss_pred HHHHhhcc----------hhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHh
Q 006698 215 LFEKLVSG----------DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284 (635)
Q Consensus 215 ~~~~~~~~----------~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~ 284 (635)
+|+.+... .+...++..+||+|||||||.+||..|.+++++..+++++||+|||||+||++.|+|.|++|
T Consensus 794 myRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnF 873 (1567)
T KOG1015|consen 794 MYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNF 873 (1567)
T ss_pred HHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHh
Confidence 99988765 34556677889999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHH-HhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCc
Q 006698 285 VRQEFGEVLRTV-RKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPD 363 (635)
Q Consensus 285 l~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s 363 (635)
+.|+++|+...| .+|.+++..+...+.+....+ .......-|...|..|+.|+....+.+.|||++++++.+.+|
T Consensus 874 VKe~lLGs~~EfrNRFvNpI~nGq~~dST~~DVr----~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrlt 949 (1567)
T KOG1015|consen 874 VKENLLGSIKEFRNRFVNPIQNGQCADSTMVDVR----VMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLT 949 (1567)
T ss_pred cccccccCcHHHHHhhcCccccCccCCCcHHHHH----HHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEecc
Confidence 999999999985 689999999888776655444 334566789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh---------------hhhHHHHHHHHhhhcCCCCCCCcccc--------------ccC----------
Q 006698 364 EFQKRLCKAVEG---------------VKSFVELNYCVSLLSVHPSLLPQQFF--------------ESF---------- 404 (635)
Q Consensus 364 ~~q~~~y~~~~~---------------~~~~~~~~~~~~~~~~~p~l~~~~~~--------------~~~---------- 404 (635)
+.|..+|..+.. .+.++...+.++++.+||+.+.-... .+.
T Consensus 950 elQ~~LYq~yL~h~~~~G~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s 1029 (1567)
T KOG1015|consen 950 ELQCKLYQYYLDHLTGVGNDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMS 1029 (1567)
T ss_pred HHHHHHHHHHHhhccccCCccccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCcccccc
Confidence 999999999876 22677778889999999987543200 000
Q ss_pred ------------------c------------------------------------cch--HHHhhc--------------
Q 006698 405 ------------------D------------------------------------VDS--AKLARL-------------- 414 (635)
Q Consensus 405 ------------------~------------------------------------~~~--~~l~~~-------------- 414 (635)
+ .+. ..+..+
T Consensus 1030 ~~s~d~~~~~ks~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew 1109 (1567)
T KOG1015|consen 1030 LSSDDYTKKKKSGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEW 1109 (1567)
T ss_pred ccccchhhcccccccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHh
Confidence 0 000 011110
Q ss_pred ---------ccCccccchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhh-----------------cccCCc
Q 006698 415 ---------KLDPEAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRF-----------------NWREGQ 466 (635)
Q Consensus 415 ---------~~~~~~s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~-----------------~~~~g~ 466 (635)
......|+|+-.|+++|..+ -|.|+|||||+..+++.|+.+|.-.- .|..|.
T Consensus 1110 ~kd~v~e~d~~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~Gk 1189 (1567)
T KOG1015|consen 1110 YKDFVTEADAEVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGK 1189 (1567)
T ss_pred HHhhhhhhhhhhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCC
Confidence 01123489999999999988 89999999999999999999997541 277799
Q ss_pred eEEEEeCCCCHHHHHHHHHHhcCCCC-CcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEE
Q 006698 467 EVLYMDGKQDVKKRQSSINVLNDPSS-QARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545 (635)
Q Consensus 467 ~~~~i~G~~~~~~r~~~i~~F~~~~~-~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~ 545 (635)
.|.+|+|+++..+|+++.+.||++.. .++.+||||+||+.||||.+||+||+||..|||+.+.|+|-|+||+||+|+||
T Consensus 1190 DyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvy 1269 (1567)
T KOG1015|consen 1190 DYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVY 1269 (1567)
T ss_pred ceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCcee
Confidence 99999999999999999999997543 56789999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChHHHHHHHHHHhhhhhccccccC
Q 006698 546 VYHLITSETLEWDKLRRQARKVWWSNMVFPSS 577 (635)
Q Consensus 546 vy~li~~~tiEe~i~~~~~~K~~~~~~~~~~~ 577 (635)
||||++.||+|++||.||..|+.++..|++..
T Consensus 1270 iYRfiAqGTmEeKIYkRQVTKqsls~RVVDeq 1301 (1567)
T KOG1015|consen 1270 IYRFIAQGTMEEKIYKRQVTKQSLSFRVVDEQ 1301 (1567)
T ss_pred ehhhhhcccHHHHHHHHHHhHhhhhhhhhhHH
Confidence 99999999999999999999999999999754
No 11
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.9e-72 Score=586.06 Aligned_cols=459 Identities=23% Similarity=0.281 Sum_probs=383.6
Q ss_pred eecChh-HHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCC-CCCcE
Q 006698 60 ELVPRD-VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP-RCRPV 137 (635)
Q Consensus 60 ~~~p~~-l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~-~~~~L 137 (635)
...|.. .+++|++||+.|++||...+- .+-+||||||||+|||+|+|+++.+++.... .+|.|
T Consensus 384 ~~Qps~l~GG~Lk~YQl~GLqWmVSLyN---------------NnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~L 448 (1157)
T KOG0386|consen 384 AKQPSSLQGGELKEYQLHGLQWMVSLYN---------------NNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFL 448 (1157)
T ss_pred ccCcchhcCCCCchhhhhhhHHHhhccC---------------CCcccccchhcccchHHHHHHHHHHHHHHcccCCCeE
Confidence 344543 367999999999999976543 3568999999999999999999988887644 46779
Q ss_pred EEeCccchHHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHH
Q 006698 138 IIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFE 217 (635)
Q Consensus 138 Iv~P~~l~~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~ 217 (635)
||||.+++.+|..||.+|.|++....+.|..-..+... ... ...+++|++|||+.+.
T Consensus 449 vivPlstL~NW~~Ef~kWaPSv~~i~YkGtp~~R~~l~------~qi-----------------r~gKFnVLlTtyEyii 505 (1157)
T KOG0386|consen 449 IIVPLSTLVNWSSEFPKWAPSVQKIQYKGTPQQRSGLT------KQQ-----------------RHGKFNVLLTTYEYII 505 (1157)
T ss_pred EeccccccCCchhhccccccceeeeeeeCCHHHHhhHH------HHH-----------------hcccceeeeeeHHHhc
Confidence 99999999999999999999987777665332111111 111 0247899999999887
Q ss_pred HhhcchhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHH-hcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHH
Q 006698 218 KLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALS-RIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTV 296 (635)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~-~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~ 296 (635)
+.. .-+-...|.++||||+|++||..+++...+. ...+.+|++|||||+||++.|+|++|+|+-|.+|.+...|
T Consensus 506 kdk-----~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~F 580 (1157)
T KOG0386|consen 506 KDK-----ALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAF 580 (1157)
T ss_pred CCH-----HHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHH
Confidence 632 2234456999999999999999999999998 5699999999999999999999999999999999999998
Q ss_pred HhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhh
Q 006698 297 RKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGV 376 (635)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~ 376 (635)
..|++..-...... .........-.+.+|++.++||++||.++++...||.+.+.++.|.||..|+.+|..+.+.
T Consensus 581 eqWFN~PFantGek-----~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~ 655 (1157)
T KOG0386|consen 581 EQWFNQPFANTGEK-----VELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNK 655 (1157)
T ss_pred HHHhhhhhhhcCCc-----ccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhC
Confidence 88876543333210 0001112334578899999999999999999999999999999999999999999998742
Q ss_pred --------------hhHHHHHHHHhhhcCCCCCCCccccccCc-cchHHHhhcccCccccchHHHHHHHHHhc--CCCeE
Q 006698 377 --------------KSFVELNYCVSLLSVHPSLLPQQFFESFD-VDSAKLARLKLDPEAGIKTRFLLILLELS--TNEKV 439 (635)
Q Consensus 377 --------------~~~~~~~~~~~~~~~~p~l~~~~~~~~~~-~~~~~l~~~~~~~~~s~K~~~l~~~l~~~--~~~kv 439 (635)
....+..+.+|++||||+++......... .+. ..-...++|+..|..++... .|++|
T Consensus 656 g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~------~dL~R~sGKfELLDRiLPKLkatgHRV 729 (1157)
T KOG0386|consen 656 GQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDI------KDLVRVSGKFELLDRILPKLKATGHRV 729 (1157)
T ss_pred CCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccCh------hHHHHhccHHHHHHhhhHHHHhcCcch
Confidence 25677889999999999998543222111 001 11234689999999999887 89999
Q ss_pred EEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEe
Q 006698 440 LVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519 (635)
Q Consensus 440 iIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~ 519 (635)
+.|++.+..+++++.+|.-. ++.|.++||+++.++|..+++.||.+++.+++||+||++||.|+|||.|++||+|
T Consensus 730 LlF~qMTrlmdimEdyL~~~-----~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviif 804 (1157)
T KOG0386|consen 730 LLFSQMTRLMDILEDYLQIR-----EYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIF 804 (1157)
T ss_pred hhHHHHHHHHHHHHHHHhhh-----hhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEe
Confidence 99999999999999999987 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhhhccccccC
Q 006698 520 DVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSS 577 (635)
Q Consensus 520 d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~~~~~~~~~ 577 (635)
|.+|||..+.||..|+|||||+++|+|+|+++-+++||.|++++..|..+...++...
T Consensus 805 dsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviqag 862 (1157)
T KOG0386|consen 805 DSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQAG 862 (1157)
T ss_pred cCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999888654
No 12
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-69 Score=526.00 Aligned_cols=469 Identities=22% Similarity=0.263 Sum_probs=363.2
Q ss_pred ecChhHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe
Q 006698 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA 140 (635)
Q Consensus 61 ~~p~~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~ 140 (635)
..|.++-..|.|||++++.|+..+.. +...|||||||||+|||+|+|+++.+ .-...|+||||
T Consensus 176 eqP~dlii~LL~fQkE~l~Wl~~QE~--------------Ss~~GGiLADEMGMGKTIQtIaLlla---e~~ra~tLVva 238 (791)
T KOG1002|consen 176 EQPDDLIIPLLPFQKEGLAWLTSQEE--------------SSVAGGILADEMGMGKTIQTIALLLA---EVDRAPTLVVA 238 (791)
T ss_pred cCcccceecchhhhHHHHHHHHHhhh--------------hhhccceehhhhccchHHHHHHHHHh---ccccCCeeEEc
Confidence 45667778899999999999987643 23679999999999999999999866 33455789999
Q ss_pred CccchHHHHHHHHHhcC-CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHh
Q 006698 141 PRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219 (635)
Q Consensus 141 P~~l~~qW~~E~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~ 219 (635)
|...+.||.+||.++.. .++++.++|........+ ..++|+|+|||..++..
T Consensus 239 P~VAlmQW~nEI~~~T~gslkv~~YhG~~R~~nike---------------------------l~~YDvVLTty~vvEs~ 291 (791)
T KOG1002|consen 239 PTVALMQWKNEIERHTSGSLKVYIYHGAKRDKNIKE---------------------------LMNYDVVLTTYAVVESV 291 (791)
T ss_pred cHHHHHHHHHHHHHhccCceEEEEEecccccCCHHH---------------------------hhcCcEEEEecHHHHHH
Confidence 99999999999999964 577888887654433221 25789999999998876
Q ss_pred hcc------------hhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhh
Q 006698 220 VSG------------DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQ 287 (635)
Q Consensus 220 ~~~------------~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p 287 (635)
.+. ...+-+....|-.||+||||.+|+..|...+++..|.+.+||+|||||+||.+.|+|++++||+.
T Consensus 292 yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i 371 (791)
T KOG1002|consen 292 YRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNI 371 (791)
T ss_pred HHhccccccccCCcccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHcc
Confidence 654 11222334468999999999999999999999999999999999999999999999999999975
Q ss_pred hhhhhHHH------HH--hh----hhhhhHh-------hhh-hhhhhhhhcc-CcCcHHHHHHHHHhhcchhhhcccccc
Q 006698 288 EFGEVLRT------VR--KS----GREISKA-------KHA-SLISSIGRCA-NHRDDEKLKELKEKIAPFVNVHKGTVL 346 (635)
Q Consensus 288 ~~~~~~~~------~~--~~----~~~~~~~-------~~~-~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~rr~~~~~ 346 (635)
..+.-+-. .. .| .++-+.. .+. -...++..+. .-.+.......+..+..+|+||++-.-
T Consensus 372 ~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~R 451 (791)
T KOG1002|consen 372 NPFSYYFCTKCDCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLER 451 (791)
T ss_pred CcchhhhhhhccccccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhccc
Confidence 53321110 00 00 0000000 000 0111111111 113344556778888999999977553
Q ss_pred cc--cCCCceEEEEEeCCcHHHHHHHHHHhh------------------hhhHHHHHHHHhhhcCCCCCCCcccccc-C-
Q 006698 347 QE--SLPGLRHSVVILQPDEFQKRLCKAVEG------------------VKSFVELNYCVSLLSVHPSLLPQQFFES-F- 404 (635)
Q Consensus 347 ~~--~lp~~~~~~v~~~~s~~q~~~y~~~~~------------------~~~~~~~~~~~~~~~~~p~l~~~~~~~~-~- 404 (635)
.+ .|||....+..--++..+..+|+.+.. .++.+....++|++..||+|+....... .
T Consensus 452 AdDLgLPPRiv~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~ 531 (791)
T KOG1002|consen 452 ADDLGLPPRIVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPD 531 (791)
T ss_pred ccccCCCccceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCc
Confidence 33 579988777777788899999988754 2366778889999999999975520000 0
Q ss_pred ------------------------------------------------------ccc----------------hHHHhhc
Q 006698 405 ------------------------------------------------------DVD----------------SAKLARL 414 (635)
Q Consensus 405 ------------------------------------------------------~~~----------------~~~l~~~ 414 (635)
..| .+.+..+
T Consensus 532 enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRi 611 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRI 611 (791)
T ss_pred cccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhc
Confidence 000 0011111
Q ss_pred c-cCccccchHHHHHHHHHhc----CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcC
Q 006698 415 K-LDPEAGIKTRFLLILLELS----TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND 489 (635)
Q Consensus 415 ~-~~~~~s~K~~~l~~~l~~~----~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~ 489 (635)
. .+...|.|+++|.+-+... ..-|.||||||+.++|.|.-.|.+. |+.++.+.|+|++..|...|+.|.+
T Consensus 612 nm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~ka-----GfscVkL~GsMs~~ardatik~F~n 686 (791)
T KOG1002|consen 612 NMDDWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKA-----GFSCVKLVGSMSPAARDATIKYFKN 686 (791)
T ss_pred chhhhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhcc-----CceEEEeccCCChHHHHHHHHHhcc
Confidence 1 1334688999988766544 5679999999999999999999998 9999999999999999999999998
Q ss_pred CCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhh
Q 006698 490 PSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569 (635)
Q Consensus 490 ~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~ 569 (635)
+.+++|||+|.+|||+.|||+.|++|+++||+|||+...|+.+|+|||||.++|.|.+|+.++|+|++|++.|++|..+
T Consensus 687 -d~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~m 765 (791)
T KOG1002|consen 687 -DIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANM 765 (791)
T ss_pred -CCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhh
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCCC
Q 006698 570 SNMVFPSSDG 579 (635)
Q Consensus 570 ~~~~~~~~~~ 579 (635)
+++.++++..
T Consensus 766 ihaTi~qde~ 775 (791)
T KOG1002|consen 766 IHATIGQDEE 775 (791)
T ss_pred hhhhcCCcHH
Confidence 9999988755
No 13
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.8e-69 Score=545.12 Aligned_cols=459 Identities=23% Similarity=0.308 Sum_probs=371.1
Q ss_pred ceeeecChhHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh------
Q 006698 57 TVWELVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL------ 130 (635)
Q Consensus 57 ~~~~~~p~~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~------ 130 (635)
+....-|.+++..|.|||+.|+.||..+. ...+.||||||+||+|||+++|+++..-...
T Consensus 313 t~lte~P~g~~v~LmpHQkaal~Wl~wRE--------------~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~ 378 (901)
T KOG4439|consen 313 TDLTETPDGLKVELMPHQKAALRWLLWRE--------------SQPPSGGILADDMGLGKTLSMISLILHQKAARKAREK 378 (901)
T ss_pred ccccCCCCcceeecchhhhhhhhhhcccc--------------cCCCCCcccccccccccchHHHHHHHHHHHHHHhhcc
Confidence 44456677888999999999999997653 3458899999999999999999998654321
Q ss_pred -CC-CCCcEEEeCccchHHHHHHHHHhcC--CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCC
Q 006698 131 -HP-RCRPVIIAPRSMLLTWEEEFKKWGI--DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGT 206 (635)
Q Consensus 131 -~~-~~~~LIv~P~~l~~qW~~E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (635)
+. ..++|||||.+++.||..|+.+-.. .+.|+.++|........+. ...+
T Consensus 379 ~~~~a~~TLII~PaSli~qW~~Ev~~rl~~n~LsV~~~HG~n~r~i~~~~--------------------------L~~Y 432 (901)
T KOG4439|consen 379 KGESASKTLIICPASLIHQWEAEVARRLEQNALSVYLYHGPNKREISAKE--------------------------LRKY 432 (901)
T ss_pred cccccCCeEEeCcHHHHHHHHHHHHHHHhhcceEEEEecCCccccCCHHH--------------------------Hhhc
Confidence 11 2258999999999999999986532 3677777775542111111 2478
Q ss_pred CeEEeeHHHHHHhhcc-----hhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHH
Q 006698 207 GILGLSYRLFEKLVSG-----DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENT 281 (635)
Q Consensus 207 ~vvi~ty~~~~~~~~~-----~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~l 281 (635)
|||||||..+.+.... ....-+....|.+||+||||.+||++++.+.+++.|.+..||+|||||++|+.-|+|++
T Consensus 433 DvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysL 512 (901)
T KOG4439|consen 433 DVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSL 512 (901)
T ss_pred ceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHH
Confidence 9999999987762221 12233455569999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhhHHHHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccc-----cCCCceEE
Q 006698 282 LSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQE-----SLPGLRHS 356 (635)
Q Consensus 282 l~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~-----~lp~~~~~ 356 (635)
+.||+...|+++..|+....... .....++.-+.++.++||+++.+.. .||.+...
T Consensus 513 lrFLr~~pF~D~~~Wke~i~~~s-------------------~~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~ 573 (901)
T KOG4439|consen 513 LRFLRCPPFGDLKQWKENIDNMS-------------------KGGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIE 573 (901)
T ss_pred HHHhcCCCcchHHHHHHhccCcc-------------------ccchhhhhhhhhhHHhhhhHHhhccccccccCcccceE
Confidence 99999999998887666553321 2223456667888999999988776 79999999
Q ss_pred EEEeCCcHHHHHHHHHHhhhh------------------------------------------------------hHHHH
Q 006698 357 VVILQPDEFQKRLCKAVEGVK------------------------------------------------------SFVEL 382 (635)
Q Consensus 357 ~v~~~~s~~q~~~y~~~~~~~------------------------------------------------------~~~~~ 382 (635)
+..++|+..+...|+-+.+.. -.+..
T Consensus 574 l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~L 653 (901)
T KOG4439|consen 574 LHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVL 653 (901)
T ss_pred EEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHH
Confidence 999999999999998764411 12556
Q ss_pred HHHHhhhcCCCCCCCcccccc----C---ccchH--------HH---------------------hhcccCccccchHHH
Q 006698 383 NYCVSLLSVHPSLLPQQFFES----F---DVDSA--------KL---------------------ARLKLDPEAGIKTRF 426 (635)
Q Consensus 383 ~~~~~~~~~~p~l~~~~~~~~----~---~~~~~--------~l---------------------~~~~~~~~~s~K~~~ 426 (635)
..++|++|+||.+........ . +.+.. .+ .++......|.|+..
T Consensus 654 LlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~ 733 (901)
T KOG4439|consen 654 LLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAM 733 (901)
T ss_pred HHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhhhhHHHhhhhcccccccccccccccccchhhhcccccchhHHHH
Confidence 778999999997765541100 0 00000 00 111112236889999
Q ss_pred HHHHHHhc---CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCC
Q 006698 427 LLILLELS---TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKA 503 (635)
Q Consensus 427 l~~~l~~~---~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~ 503 (635)
++++++.. ..+|+||-+||+.+++.+...|.+. |..|..++|.+..++|+.+++.||...++.+|+|+|..+
T Consensus 734 ~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~-----g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtA 808 (901)
T KOG4439|consen 734 VLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKG-----GHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTA 808 (901)
T ss_pred HHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhC-----CeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEcc
Confidence 98888876 8899999999999999999999987 999999999999999999999999878889999999999
Q ss_pred cccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhhhccccccCCC
Q 006698 504 CCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDG 579 (635)
Q Consensus 504 ~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~~~~~~~~~~~ 579 (635)
||+||||.+||++|++|++|||+-+.||-+|++|+||+|+|+||||++.||+|+++...|..|..++..|+.|...
T Consensus 809 GGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~t 884 (901)
T KOG4439|consen 809 GGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSAT 884 (901)
T ss_pred CcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986544
No 14
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=1e-65 Score=520.10 Aligned_cols=498 Identities=27% Similarity=0.381 Sum_probs=392.8
Q ss_pred ecChhHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe
Q 006698 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA 140 (635)
Q Consensus 61 ~~p~~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~ 140 (635)
..| .|...+.|||+-||+||+++... .+.+ ++.+.+.||||||.||||||+|.|+|+.-+++.-+.+.+|+|+
T Consensus 247 lap-qla~v~kPHQiGGiRFlYDN~iE-----Sl~r-ykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~AKtVL~iv 319 (1387)
T KOG1016|consen 247 LAP-QLAHVLKPHQIGGIRFLYDNTIE-----SLGR-YKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTKAKTVLVIV 319 (1387)
T ss_pred ehh-hhHhhcCccccCcEEEehhhHHH-----HHhh-ccccCCcceeeeeccccCceeEEeehhHHHhhcCccceEEEEE
Confidence 445 89999999999999999998754 3344 4445677999999999999999999999999999999999999
Q ss_pred CccchHHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhh
Q 006698 141 PRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV 220 (635)
Q Consensus 141 P~~l~~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~ 220 (635)
|..++.||-.||..|.|...... + .....- ... ......+...-|...+..|....+|+++.|++|+-+.
T Consensus 320 PiNTlQNWlsEfnmWiP~y~sD~--~-vrpR~F--~vf-----~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~ 389 (1387)
T KOG1016|consen 320 PINTLQNWLSEFNMWIPKYFSDT--G-VRPRSF--EVF-----LLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLI 389 (1387)
T ss_pred ehHHHHHHHHHhhhhcCCCcccC--C-Ccccee--EEE-----EecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHH
Confidence 99999999999999988632110 0 000000 000 0000000011122245689999999999999998665
Q ss_pred cc---------------------------------hhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEe
Q 006698 221 SG---------------------------------DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILS 267 (635)
Q Consensus 221 ~~---------------------------------~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LT 267 (635)
.. .....++..++|+|||||+|++||..+..+.+++.+++++|+.||
T Consensus 390 lk~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLT 469 (1387)
T KOG1016|consen 390 LKTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLT 469 (1387)
T ss_pred HhcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEe
Confidence 43 223455667899999999999999999999999999999999999
Q ss_pred cccCCCChhhHHHHHHhhhhhhhhhHHHH-HhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccc
Q 006698 268 GTPFQNNFQELENTLSLVRQEFGEVLRTV-RKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVL 346 (635)
Q Consensus 268 gTP~~n~~~el~~ll~~l~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~ 346 (635)
|-|+||++.|+|.|++|++|+++|....| ..|.+++..+..-+.+....+ ........|+.++..|+.||+-..+
T Consensus 470 GYPLQNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvk----lmryRtHVLhsLl~GFVQRR~HtvL 545 (1387)
T KOG1016|consen 470 GYPLQNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVK----LMRYRTHVLHSLLKGFVQRRTHTVL 545 (1387)
T ss_pred ccccccchHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHH----HHHHHHHHHHHHHHHHHHhcchhhH
Confidence 99999999999999999999999998884 677777777765554443333 3455677899999999999999999
Q ss_pred cccCCCceEEEEEeCCcHHHHHHHHHHhhhh------------hHHHHHHHHhhhcCCCCCCCccccc-----cCccch-
Q 006698 347 QESLPGLRHSVVILQPDEFQKRLCKAVEGVK------------SFVELNYCVSLLSVHPSLLPQQFFE-----SFDVDS- 408 (635)
Q Consensus 347 ~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~------------~~~~~~~~~~~~~~~p~l~~~~~~~-----~~~~~~- 408 (635)
...||.+.++++.+.+|..|+++|+.+.... +.+.....+.++.+||.++...... ..+.+.
T Consensus 546 k~~LP~k~EyViLvr~s~iQR~LY~~Fm~d~~r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~ve 625 (1387)
T KOG1016|consen 546 KKILPEKKEYVILVRKSQIQRQLYRNFMLDAKREIAANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVE 625 (1387)
T ss_pred hhhcccccceEEEEeHHHHHHHHHHHHHHHHHHhhccccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHH
Confidence 9999999999999999999999999875211 5566667777888999875442110 000000
Q ss_pred ---------------------------------------------------------------HHHhhcc-cCccccchH
Q 006698 409 ---------------------------------------------------------------AKLARLK-LDPEAGIKT 424 (635)
Q Consensus 409 ---------------------------------------------------------------~~l~~~~-~~~~~s~K~ 424 (635)
..++.+. ...+.++|+
T Consensus 626 e~~~ag~~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~ 705 (1387)
T KOG1016|consen 626 EMKFAGLQQQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKI 705 (1387)
T ss_pred HHhhhcccccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCce
Confidence 0000000 011234555
Q ss_pred HHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhh-------------cccCCceEEEEeCCCCHHHHHHHHHHhcC
Q 006698 425 RFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRF-------------NWREGQEVLYMDGKQDVKKRQSSINVLND 489 (635)
Q Consensus 425 ~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~-------------~~~~g~~~~~i~G~~~~~~r~~~i~~F~~ 489 (635)
-.+++++++. -|+|+||||+....++.|++.|.++- .|.....+.+++|.++..+|+++|++||+
T Consensus 706 V~~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~ 785 (1387)
T KOG1016|consen 706 VISLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNS 785 (1387)
T ss_pred EEEEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccC
Confidence 5566666655 78899999999999999999998761 14445778999999999999999999998
Q ss_pred CCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhh
Q 006698 490 PSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569 (635)
Q Consensus 490 ~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~ 569 (635)
..+-...|++||++|..||||..|+++|+||..|||....||+.|++|.||+|+++||||++..++|.+||+||..|+.+
T Consensus 786 e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGm 865 (1387)
T KOG1016|consen 786 EPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGM 865 (1387)
T ss_pred CCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccc
Confidence 66655688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCCC
Q 006698 570 SNMVFPSSDG 579 (635)
Q Consensus 570 ~~~~~~~~~~ 579 (635)
.+.|+++-..
T Consensus 866 sdRvVDd~np 875 (1387)
T KOG1016|consen 866 SDRVVDDANP 875 (1387)
T ss_pred hhhhhcccCc
Confidence 9999998766
No 15
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=2e-62 Score=475.98 Aligned_cols=458 Identities=21% Similarity=0.217 Sum_probs=345.1
Q ss_pred ecChhHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe
Q 006698 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA 140 (635)
Q Consensus 61 ~~p~~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~ 140 (635)
..|..+-..|.|||++||.|.+++ +++|+||||||+|||+|||+++..|... +|.||||
T Consensus 190 v~d~kLvs~LlPFQreGv~faL~R------------------gGR~llADeMGLGKTiQAlaIA~yyraE---wplliVc 248 (689)
T KOG1000|consen 190 VMDPKLVSRLLPFQREGVIFALER------------------GGRILLADEMGLGKTIQALAIARYYRAE---WPLLIVC 248 (689)
T ss_pred ccCHHHHHhhCchhhhhHHHHHhc------------------CCeEEEecccccchHHHHHHHHHHHhhc---CcEEEEe
Confidence 346688899999999999999875 7899999999999999999999888654 4569999
Q ss_pred CccchHHHHHHHHHhcCCCcc-cccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHh
Q 006698 141 PRSMLLTWEEEFKKWGIDIPF-YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219 (635)
Q Consensus 141 P~~l~~qW~~E~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~ 219 (635)
|+++...|.+++.+|.|.... +++.+.......- -....|.|+||+.+..+
T Consensus 249 PAsvrftWa~al~r~lps~~pi~vv~~~~D~~~~~----------------------------~t~~~v~ivSye~ls~l 300 (689)
T KOG1000|consen 249 PASVRFTWAKALNRFLPSIHPIFVVDKSSDPLPDV----------------------------CTSNTVAIVSYEQLSLL 300 (689)
T ss_pred cHHHhHHHHHHHHHhcccccceEEEecccCCcccc----------------------------ccCCeEEEEEHHHHHHH
Confidence 999999999999999987533 2222211110000 12346899999998865
Q ss_pred hcchhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhc--ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHH
Q 006698 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRI--KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297 (635)
Q Consensus 220 ~~~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l--~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~ 297 (635)
.+. +....|.+||+||+|.+|+..+++.+++..+ ...|+|+|||||--.++.|||.++..+++.++.++..
T Consensus 301 ~~~-----l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~e-- 373 (689)
T KOG1000|consen 301 HDI-----LKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHE-- 373 (689)
T ss_pred HHH-----HhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHH--
Confidence 432 4444599999999999999999999999888 8899999999999999999999999999999887765
Q ss_pred hhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcc-hhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhh
Q 006698 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP-FVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGV 376 (635)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~ 376 (635)
|+..++.+..-.....+ .+-.++.+|+.++.. .|+||.+.++..+||+++..++++. ...+.+..+.+...
T Consensus 374 -fa~rYCd~k~vr~~~Dy------kg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~-~gr~da~~~~lv~~ 445 (689)
T KOG1000|consen 374 -FAIRYCDGKQVRFCFDY------KGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVS-GGRIDARMDDLVKA 445 (689)
T ss_pred -HHHHhcCccccceeeec------CCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEc-CCccchHHHHHHHH
Confidence 44444443322222222 334467788877765 5789999999999999966665543 22222222222211
Q ss_pred hhH-HHH-HHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc------CCCeEEEEcCChhH
Q 006698 377 KSF-VEL-NYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS------TNEKVLVFSQYIEP 448 (635)
Q Consensus 377 ~~~-~~~-~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~------~~~kviIFs~~~~~ 448 (635)
+.- -.. .+.- +|- ..+ +........|+..+.+.+... ++.|++||+++..+
T Consensus 446 a~~~t~~~~~e~----~~~---------------~l~--l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~v 504 (689)
T KOG1000|consen 446 AADYTKVNSMER----KHE---------------SLL--LFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIV 504 (689)
T ss_pred hhhcchhhhhhh----hhH---------------HHH--HHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHH
Confidence 100 000 0000 000 000 011112345777787766662 88999999999999
Q ss_pred HHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhH
Q 006698 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVE 528 (635)
Q Consensus 449 ~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~ 528 (635)
+|-|...+.++ ++...+|||+++..+|+.+++.|+. +++++|-++|..|+|+||+|++|+.|||.+++|||+..
T Consensus 505 Ld~Iq~~~~~r-----~vg~IRIDGst~s~~R~ll~qsFQ~-seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvL 578 (689)
T KOG1000|consen 505 LDTIQVEVNKR-----KVGSIRIDGSTPSHRRTLLCQSFQT-SEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVL 578 (689)
T ss_pred HHHHHHHHHHc-----CCCeEEecCCCCchhHHHHHHHhcc-ccceEEEEEEEeecccceeeeccceEEEEEecCCCceE
Confidence 99999999998 9999999999999999999999997 46799999999999999999999999999999999999
Q ss_pred HhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhhhccccccCCCC---CCCCCcCCccchHHHHHHHHHhcCC
Q 006698 529 RQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGG---GNDQTTASEPLEDKILEEMAQLYNN 605 (635)
Q Consensus 529 ~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~ 605 (635)
.||.+|+||+||+..|.||+|+++||+|+.+|..+.+|.+....+-.++... .....+..+.....+.+++....++
T Consensus 579 lQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~gl~s~~~~~~e~~g~s~~~~aq~~i~~~~~k~~~~ 658 (689)
T KOG1000|consen 579 LQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSVGLSSDTFRTAEKMGLSFNDAAQPGIAEYLKKTPDT 658 (689)
T ss_pred EechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHHhhcccCcccceeecccceeecCcccchHHHHHhhCCCC
Confidence 9999999999999999999999999999999999999999988877666553 1111122233455666666666554
Q ss_pred Cchh
Q 006698 606 PSET 609 (635)
Q Consensus 606 ~~~~ 609 (635)
++..
T Consensus 659 ti~~ 662 (689)
T KOG1000|consen 659 TIDE 662 (689)
T ss_pred chhh
Confidence 4433
No 16
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2.7e-60 Score=523.83 Aligned_cols=444 Identities=17% Similarity=0.184 Sum_probs=324.9
Q ss_pred HHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccch
Q 006698 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSML 145 (635)
Q Consensus 66 l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~ 145 (635)
....|.|||...+..+.... ..++|||||||+|||++|++++..++..+..+|+|||||.+|+
T Consensus 149 ~~~~l~pHQl~~~~~vl~~~-----------------~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~sL~ 211 (956)
T PRK04914 149 ARASLIPHQLYIAHEVGRRH-----------------APRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPETLQ 211 (956)
T ss_pred CCCCCCHHHHHHHHHHhhcc-----------------CCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCHHHH
Confidence 35579999999998776542 4589999999999999999999998888888899999999999
Q ss_pred HHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhh
Q 006698 146 LTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225 (635)
Q Consensus 146 ~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~ 225 (635)
.||..|+.+++ ++++.+++......... . ...+| ...+++|+||+.+.+.. ...
T Consensus 212 ~QW~~El~~kF-~l~~~i~~~~~~~~~~~------------~----------~~~pf-~~~~~vI~S~~~l~~~~--~~~ 265 (956)
T PRK04914 212 HQWLVEMLRRF-NLRFSLFDEERYAEAQH------------D----------ADNPF-ETEQLVICSLDFLRRNK--QRL 265 (956)
T ss_pred HHHHHHHHHHh-CCCeEEEcCcchhhhcc------------c----------ccCcc-ccCcEEEEEHHHhhhCH--HHH
Confidence 99999997654 23333433221110000 0 00112 35689999999987632 223
Q ss_pred hhhhccCCCEEEEeCCCcCCCc---ccHHHHHHHhc--ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhh
Q 006698 226 SGILLDLPGLFVFDEGHTPRND---DTCMFKALSRI--KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300 (635)
Q Consensus 226 ~~~~~~~~~~vIvDEaH~~kn~---~s~~~~~l~~l--~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~ 300 (635)
..+....||+|||||||++++. .|..++.+..+ +++++++|||||++|+..|+|+++++|+|+.++++..|..-.
T Consensus 266 ~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~ 345 (956)
T PRK04914 266 EQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQ 345 (956)
T ss_pred HHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHH
Confidence 4456668999999999999953 56778899888 678999999999999999999999999999999988865422
Q ss_pred hhhhHh----------hh--hhhhhhhhhccC---------------cCcH----HHHHHHHH--hhcchhhhccccccc
Q 006698 301 REISKA----------KH--ASLISSIGRCAN---------------HRDD----EKLKELKE--KIAPFVNVHKGTVLQ 347 (635)
Q Consensus 301 ~~~~~~----------~~--~~~~~~~~~~~~---------------~~~~----~~~~~l~~--~l~~~~~rr~~~~~~ 347 (635)
..+... .. ......+..... .... +.+..|.. -..++++|+++.++.
T Consensus 346 ~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~ 425 (956)
T PRK04914 346 QQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK 425 (956)
T ss_pred HhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc
Confidence 211110 00 000000000000 0000 01111111 123567788888875
Q ss_pred ccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHH
Q 006698 348 ESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFL 427 (635)
Q Consensus 348 ~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l 427 (635)
.+|++....+.+++++.....+... .....+. +.+|..+.. ...........++|+.+|
T Consensus 426 -~fp~R~~~~~~l~~~~~y~~~~~~~--------~~~~~~~-~l~pe~~~~-----------~~~~~~~~~~~d~Ki~~L 484 (956)
T PRK04914 426 -GFPKRELHPIPLPLPEQYQTAIKVS--------LEARARD-MLYPEQIYQ-----------EFEDNATWWNFDPRVEWL 484 (956)
T ss_pred -CCCcCceeEeecCCCHHHHHHHHHh--------HHHHHHh-hcCHHHHHH-----------HHhhhhhccccCHHHHHH
Confidence 7999999999998876544433220 0011111 112211000 000111123356899999
Q ss_pred HHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccc
Q 006698 428 LILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEG 507 (635)
Q Consensus 428 ~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~G 507 (635)
.++++...++|+||||++..+++.|.+.|... .|+++..++|+++..+|.++++.|++++++++||| +|++||+|
T Consensus 485 ~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~----~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLI-sTdvgseG 559 (956)
T PRK04914 485 IDFLKSHRSEKVLVICAKAATALQLEQALRER----EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLL-CSEIGSEG 559 (956)
T ss_pred HHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc----cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEE-echhhccC
Confidence 99999888999999999999999999999543 29999999999999999999999998555688877 68999999
Q ss_pred cccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhhhccccccCC
Q 006698 508 INLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSD 578 (635)
Q Consensus 508 lnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~~~~~~~~~~ 578 (635)
+|++.|++||+||+||||..++||+||++|+||+++|.||+++.++|+|+.+++...+|.++++..++...
T Consensus 560 lNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~ 630 (956)
T PRK04914 560 RNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGR 630 (956)
T ss_pred CCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998887643
No 17
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=4.4e-57 Score=523.64 Aligned_cols=466 Identities=27% Similarity=0.339 Sum_probs=367.7
Q ss_pred hhHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCC--CCCcEEEeC
Q 006698 64 RDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP--RCRPVIIAP 141 (635)
Q Consensus 64 ~~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~--~~~~LIv~P 141 (635)
..+...|+|||.+|++|+...+. ....||+|||+||+|||+++++++........ .++.|||||
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~--------------~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p 398 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLR--------------SNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVP 398 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHH--------------hccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEec
Confidence 46778999999999999884222 12569999999999999999999987555544 357899999
Q ss_pred ccchHHHHHHHHHhcCCCc-ccccCCCCCc-CcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHh
Q 006698 142 RSMLLTWEEEFKKWGIDIP-FYNLNKPELS-GKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219 (635)
Q Consensus 142 ~~l~~qW~~E~~~~~~~~~-v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~ 219 (635)
.+++.+|.+|+.+|.|.++ +..+++.... .............. . .-.++++++||+.+...
T Consensus 399 ~s~~~nw~~e~~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~--------------~~~~~v~itty~~l~~~ 461 (866)
T COG0553 399 ASLLSNWKREFEKFAPDLRLVLVYHGEKSELDKKREALRDLLKLH---L--------------VIIFDVVITTYELLRRF 461 (866)
T ss_pred HHHHHHHHHHHhhhCccccceeeeeCCcccccHHHHHHHHHhhhc---c--------------cceeeEEechHHHHHHh
Confidence 9999999999999999988 7777664431 10011111110000 0 11368999999999873
Q ss_pred hcchhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHH-hhhhhhhh-hHHHHH
Q 006698 220 VSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS-LVRQEFGE-VLRTVR 297 (635)
Q Consensus 220 ~~~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~-~l~p~~~~-~~~~~~ 297 (635)
. .....+....|+.+|+||||++||..+..+++++.+++.++++|||||++|++.|+|++++ |+.|++++ ....|.
T Consensus 462 ~--~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~ 539 (866)
T COG0553 462 L--VDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFT 539 (866)
T ss_pred h--hhHHHHhhceeeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHH
Confidence 2 1223355567999999999999999999999999999999999999999999999999999 99999998 434444
Q ss_pred hhhhh-hhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhccccc--ccccCCCceEEEEEeCCcHHHHHHHHHHh
Q 006698 298 KSGRE-ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTV--LQESLPGLRHSVVILQPDEFQKRLCKAVE 374 (635)
Q Consensus 298 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~--~~~~lp~~~~~~v~~~~s~~q~~~y~~~~ 374 (635)
.+... ......... ..........|+..+.||++||++.+ +...+|++.+.++.|.+++.|..+|....
T Consensus 540 ~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~ 611 (866)
T COG0553 540 RLFEKPIQAEEDIGP--------LEARELGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALL 611 (866)
T ss_pred HHHhhhhhhcccccc--------hhhHHHHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHH
Confidence 43322 211111000 01223345558899999999999999 88899999999999999999999998876
Q ss_pred h---h----------------------hhHHHHHHHHhhhcCCCCCCCccccccCccchHHH-------hhcccCcccc-
Q 006698 375 G---V----------------------KSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKL-------ARLKLDPEAG- 421 (635)
Q Consensus 375 ~---~----------------------~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l-------~~~~~~~~~s- 421 (635)
. . ...+.....++++|+||.++........+...... .........+
T Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 691 (866)
T COG0553 612 EGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSK 691 (866)
T ss_pred HHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccc
Confidence 5 1 12334566788999999998876211111000000 0001112345
Q ss_pred chHHHHHHHH-Hhc--CCC--eEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEE
Q 006698 422 IKTRFLLILL-ELS--TNE--KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI 496 (635)
Q Consensus 422 ~K~~~l~~~l-~~~--~~~--kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~v 496 (635)
.|...+.+++ ... .+. |++||++++.+++++...|... ++.+++++|+++.++|+..++.|+++ .+..|
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~-----~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v 765 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKAL-----GIKYVRLDGSTPAKRRQELIDRFNAD-EEEKV 765 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhc-----CCcEEEEeCCCChhhHHHHHHHhhcC-CCCce
Confidence 8999999988 444 777 9999999999999999999997 78999999999999999999999985 56899
Q ss_pred EEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhhhcccccc
Q 006698 497 MLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPS 576 (635)
Q Consensus 497 ll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~~~~~~~~ 576 (635)
+++|+++||.|+||++|++||+||++|||+.+.||++|+||+||+++|.||+++++||+||++++++..|..+...++++
T Consensus 766 ~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~ 845 (866)
T COG0553 766 FLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDA 845 (866)
T ss_pred EEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
No 18
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.2e-49 Score=423.79 Aligned_cols=434 Identities=24% Similarity=0.267 Sum_probs=334.9
Q ss_pred HHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCC-------CCCcEEEeCccchH
Q 006698 74 QREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP-------RCRPVIIAPRSMLL 146 (635)
Q Consensus 74 Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~-------~~~~LIv~P~~l~~ 146 (635)
|.....|++... .......|||+||+||+|||+++++++........ .+.+|||||.+++.
T Consensus 135 ~~~~~~~~~~~~------------~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~ 202 (674)
T KOG1001|consen 135 LKQKYRWSLLKS------------REQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLT 202 (674)
T ss_pred HHHHHHHHhhcc------------cccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHH
Confidence 555566665432 23355789999999999999999999865443332 34569999999999
Q ss_pred HHHHHHHHhcC--CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchh
Q 006698 147 TWEEEFKKWGI--DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224 (635)
Q Consensus 147 qW~~E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~ 224 (635)
||..|+.+... .+.+.+++| ...... -...++||+|||.++...
T Consensus 203 qW~~elek~~~~~~l~v~v~~g--r~kd~~---------------------------el~~~dVVltTy~il~~~----- 248 (674)
T KOG1001|consen 203 QWKTELEKVTEEDKLSIYVYHG--RTKDKS---------------------------ELNSYDVVLTTYDILKNS----- 248 (674)
T ss_pred HHHHHHhccCCccceEEEEecc--cccccc---------------------------hhcCCceEEeeHHHhhcc-----
Confidence 99999966543 345555555 111100 124678999999998751
Q ss_pred hhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhh-hhhh
Q 006698 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS-GREI 303 (635)
Q Consensus 225 ~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~-~~~~ 303 (635)
.+....|-+||+||||.++|.+++.++++..+.+.+||+|||||+||+..|+|+++.|+.-..+.....|... ..++
T Consensus 249 --~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~ 326 (674)
T KOG1001|consen 249 --PLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPD 326 (674)
T ss_pred --cccceeEEEEEeccccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChh
Confidence 2344568999999999999999999999999999999999999999999999999999987666665554322 2222
Q ss_pred hHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccc-----cccCCCceEEEEEeCCcHHHHHHHHHHhhhh-
Q 006698 304 SKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVL-----QESLPGLRHSVVILQPDEFQKRLCKAVEGVK- 377 (635)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~-----~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~- 377 (635)
.... -......++..+..+++||++... ...+|++...++.+.++..++.+|..+....
T Consensus 327 ~~~~---------------~~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~ 391 (674)
T KOG1001|consen 327 ERNK---------------YKEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSR 391 (674)
T ss_pred hhhh---------------HHHHHHHHHHHHHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhh
Confidence 1111 035567888899999999988632 2368999999999999999999999986532
Q ss_pred -----------------hHHHHHHHHhhhcCCCCCCCccccccCccc---------------------------------
Q 006698 378 -----------------SFVELNYCVSLLSVHPSLLPQQFFESFDVD--------------------------------- 407 (635)
Q Consensus 378 -----------------~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~--------------------------------- 407 (635)
..+....+++++|+||.+...........+
T Consensus 392 ~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c 471 (674)
T KOG1001|consen 392 NQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRC 471 (674)
T ss_pred hHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccchHHHHHHHHHhhccccccccccccceeecc
Confidence 333445678899999988654311111000
Q ss_pred ------------------------hHHHhh---ccc---------CccccchHHHHHHHHHhc--CC-CeEEEEcCChhH
Q 006698 408 ------------------------SAKLAR---LKL---------DPEAGIKTRFLLILLELS--TN-EKVLVFSQYIEP 448 (635)
Q Consensus 408 ------------------------~~~l~~---~~~---------~~~~s~K~~~l~~~l~~~--~~-~kviIFs~~~~~ 448 (635)
...+.. +.. ....+.|+..+..++... .. .|+|||||++..
T Consensus 472 ~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~ 551 (674)
T KOG1001|consen 472 GHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWG 551 (674)
T ss_pred cchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHH
Confidence 000000 000 001356777777777644 22 499999999999
Q ss_pred HHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhH
Q 006698 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVE 528 (635)
Q Consensus 449 ~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~ 528 (635)
++.+...|... |+.+.+.+|.++...|.+.+..|.. ++..+|+++|.+||+.|+||++|++|+.+||+|||+.+
T Consensus 552 l~l~~~~l~~~-----~~~~~~~~g~~~~~~r~~s~~~~~~-~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~e 625 (674)
T KOG1001|consen 552 LALVCLRLFFK-----GFVFLRYDGEMLMKIRTKSFTDFPC-DPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVE 625 (674)
T ss_pred HHHhhhhhhhc-----ccccchhhhhhHHHHHHhhhccccc-CccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHH
Confidence 99999999865 9999999999999999999999995 67799999999999999999999999999999999999
Q ss_pred HhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhhhcccccc
Q 006698 529 RQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPS 576 (635)
Q Consensus 529 ~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~~~~~~~~ 576 (635)
+||+.|+||+||+++|.|++|+..+|+|++++..+++|..+...+++.
T Consensus 626 eQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~~~ 673 (674)
T KOG1001|consen 626 EQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAFGE 673 (674)
T ss_pred HHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhhhccC
Confidence 999999999999999999999999999999999999999999887764
No 19
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=8.8e-45 Score=380.07 Aligned_cols=449 Identities=23% Similarity=0.267 Sum_probs=337.9
Q ss_pred CccccCCCCCCCCcchhhhhhcCCCCCccccccCCCCCCCC--CCCCCCCC--cCCCCceeeecChhHH---hcccHHHH
Q 006698 3 SIKDIDPPFATSPSRRAEWREYNNVDPSFLDDLNSRDSGFD--SQTGCDPF--THAQGTVWELVPRDVR---KKMFPHQR 75 (635)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~p~~l~---~~L~p~Q~ 75 (635)
...+|.++|..++|..++|+-++. +.+.+........... .....+.. .......++..|..+. ..|.|||.
T Consensus 223 ~~~~~~Vk~k~l~~d~~~~e~~~~-~ip~~~~~~qe~~~~~~~~~~~k~~~~~~~~~~v~~~~qP~~l~~~~g~L~~~ql 301 (696)
T KOG0383|consen 223 GATDYLVKWKELSYDEQEWEVEDP-DIPGYSSAGQEAWHHREKPTVSKDLKSNTVDDPVPYEDQPQFLTEPGGTLHPYQL 301 (696)
T ss_pred cceeeEeeeccCCccccCCCcCCC-CcccCcccccccccccCcccccccccccccCCCCCcccCCccccCCCccccccch
Confidence 356889999999999999998873 2333333221111110 01111111 1123334556666555 78999999
Q ss_pred HHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCC-CCcEEEeCccchHHHHHHHHH
Q 006698 76 EGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPR-CRPVIIAPRSMLLTWEEEFKK 154 (635)
Q Consensus 76 ~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~-~~~LIv~P~~l~~qW~~E~~~ 154 (635)
+|++|+...+.. +..+|+|||||+|||++++.++..+...... +++|+++|.+.+.+|.+|+..
T Consensus 302 eGln~L~~~ws~---------------~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe~e~~~ 366 (696)
T KOG0383|consen 302 EGLNWLRISWSP---------------GVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWEREFEL 366 (696)
T ss_pred hhhhhhhccccc---------------CCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCCCchhc
Confidence 999999877765 5589999999999999999999887766554 577999999999999999999
Q ss_pred hcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeecc----ccCCCeEEeeHHHHHHhhcchhhhhhhc
Q 006698 155 WGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSW----KMGTGILGLSYRLFEKLVSGDELSGILL 230 (635)
Q Consensus 155 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vvi~ty~~~~~~~~~~~~~~~~~ 230 (635)
|.|+..+..+.|......-.+. ... ...+........+..| ...+.+..++|++..... .-+..
T Consensus 367 wap~~~vv~~~G~~k~r~iire-----pe~--s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~-----~il~~ 434 (696)
T KOG0383|consen 367 WAPSFYVVPYPGTAKSRAIIRE-----PEF--SFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQ-----SILFS 434 (696)
T ss_pred cCCCcccccCCCCccchhhhhc-----ccc--cccccccccCCccccccchhhcccccCCCchhhcccCH-----HHHhh
Confidence 9999888777664322111100 000 0000000000111111 235678899998865432 22344
Q ss_pred cCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhhhhHhhhhh
Q 006698 231 DLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHAS 310 (635)
Q Consensus 231 ~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~~~~~~~~~ 310 (635)
..|.++|+||+|+++|..|..++.+......++++|||||.+|++.+|+++|+|+.|+.+.....|..-+.++
T Consensus 435 v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~------- 507 (696)
T KOG0383|consen 435 VQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDI------- 507 (696)
T ss_pred hhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchh-------
Confidence 5699999999999999999999999999999999999999999999999999999999888776643332221
Q ss_pred hhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhh-----------hH
Q 006698 311 LISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVK-----------SF 379 (635)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~-----------~~ 379 (635)
...+.+..++.++.|+++||.+.++.+.+|.+.+.++.+.+++.|+++|+.++... ..
T Consensus 508 -----------~~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~~~~~~s~ 576 (696)
T KOG0383|consen 508 -----------SCEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLAGVHQYSL 576 (696)
T ss_pred -----------hHHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhhcchhHHH
Confidence 44567889999999999999999999999999999999999999999999987643 56
Q ss_pred HHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHH
Q 006698 380 VELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLR 457 (635)
Q Consensus 380 ~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~ 457 (635)
.+..+.++++|+||+++... +........+. ..-.+.+.|+..|..++... .|+||+||+|++.++|++++++.
T Consensus 577 ~n~~mel~K~~~hpy~~~~~--e~~~~~~~~~~--~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~ 652 (696)
T KOG0383|consen 577 LNIVMELRKQCNHPYLSPLE--EPLEENGEYLG--SALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLT 652 (696)
T ss_pred HHHHHHHHHhhcCcccCccc--cccccchHHHH--HHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHh
Confidence 67888999999999998872 22221111111 11134578998898888877 99999999999999999999999
Q ss_pred hhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccc
Q 006698 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEG 507 (635)
Q Consensus 458 ~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~G 507 (635)
.. + .|.+++|..+..+|+.++++||.++++-.+||+||++||.|
T Consensus 653 ~~-----~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 653 YE-----G-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred cc-----C-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 86 7 99999999999999999999998888899999999999987
No 20
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.5e-41 Score=361.03 Aligned_cols=357 Identities=16% Similarity=0.203 Sum_probs=248.7
Q ss_pred HhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCc-cch
Q 006698 67 RKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPR-SML 145 (635)
Q Consensus 67 ~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~ 145 (635)
...|||||.+++.+++.+ ...++|+|.++||+|||+++++++..+ .+++|||||. .++
T Consensus 253 ~~~LRpYQ~eAl~~~~~~----------------gr~r~GIIvLPtGaGKTlvai~aa~~l-----~k~tLILvps~~Lv 311 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGN----------------GRARSGIIVLPCGAGKSLVGVTAACTV-----KKSCLVLCTSAVSV 311 (732)
T ss_pred CCCcCHHHHHHHHHHHhc----------------CCCCCcEEEeCCCCChHHHHHHHHHHh-----CCCEEEEeCcHHHH
Confidence 467999999999998642 113589999999999999999988654 4679999995 568
Q ss_pred HHHHHHHHHhcC--CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcc-
Q 006698 146 LTWEEEFKKWGI--DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG- 222 (635)
Q Consensus 146 ~qW~~E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~- 222 (635)
.||.+||.+|.. ...+..+.+ .... .+....+|+|+||+++......
T Consensus 312 ~QW~~ef~~~~~l~~~~I~~~tg-----~~k~-------------------------~~~~~~~VvVtTYq~l~~~~~r~ 361 (732)
T TIGR00603 312 EQWKQQFKMWSTIDDSQICRFTS-----DAKE-------------------------RFHGEAGVVVSTYSMVAHTGKRS 361 (732)
T ss_pred HHHHHHHHHhcCCCCceEEEEec-----Cccc-------------------------ccccCCcEEEEEHHHhhcccccc
Confidence 999999999952 222222221 1110 0112468999999998654221
Q ss_pred ----hhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHH-hhhhhhhhhHHHHH
Q 006698 223 ----DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS-LVRQEFGEVLRTVR 297 (635)
Q Consensus 223 ----~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~-~l~p~~~~~~~~~~ 297 (635)
..+..+....|++||+||||++.+ ....+.+..+.+.++|+|||||+.++- .+..+. ++.|..+
T Consensus 362 ~~~~~~l~~l~~~~~gLII~DEvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD~--~~~~L~~LiGP~vy------- 430 (732)
T TIGR00603 362 YESEKVMEWLTNREWGLILLDEVHVVPA--AMFRRVLTIVQAHCKLGLTATLVREDD--KITDLNFLIGPKLY------- 430 (732)
T ss_pred hhhhHHHHHhccccCCEEEEEccccccH--HHHHHHHHhcCcCcEEEEeecCcccCC--chhhhhhhcCCeee-------
Confidence 112233345799999999999954 334446677799999999999987652 222222 2333221
Q ss_pred hhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccc--cccCCCceEEEEEeCCcHHHHHHHHHHhh
Q 006698 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVL--QESLPGLRHSVVILQPDEFQKRLCKAVEG 375 (635)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~--~~~lp~~~~~~v~~~~s~~q~~~y~~~~~ 375 (635)
+....++ ...|.+.....+.|+|++.....|.....
T Consensus 431 ------------------------------------------e~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~ 468 (732)
T TIGR00603 431 ------------------------------------------EANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENS 468 (732)
T ss_pred ------------------------------------------ecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcc
Confidence 1111111 12455556677889999876554432211
Q ss_pred hhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHH
Q 006698 376 VKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIM 453 (635)
Q Consensus 376 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~ 453 (635)
... ...+ .....|+..+..++..+ .++|+||||+++..++.+.
T Consensus 469 ~~k-------~~l~----------------------------~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a 513 (732)
T TIGR00603 469 RKR-------MLLY----------------------------VMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYA 513 (732)
T ss_pred hhh-------hHHh----------------------------hhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHH
Confidence 000 0000 01235888888888765 8899999999998888777
Q ss_pred HHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCC-ChhhHHhhh
Q 006698 454 EQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVW-NPFVERQAI 532 (635)
Q Consensus 454 ~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~w-np~~~~Qa~ 532 (635)
+.| + ...|+|+++..+|.+++++|+++ +.+++|++ +++|++|||+++|++||++++++ |+..+.||+
T Consensus 514 ~~L--------~--~~~I~G~ts~~ER~~il~~Fr~~-~~i~vLv~-SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRl 581 (732)
T TIGR00603 514 IKL--------G--KPFIYGPTSQQERMQILQNFQHN-PKVNTIFL-SKVGDTSIDLPEANVLIQISSHYGSRRQEAQRL 581 (732)
T ss_pred HHc--------C--CceEECCCCHHHHHHHHHHHHhC-CCccEEEE-ecccccccCCCCCCEEEEeCCCCCCHHHHHHHh
Confidence 766 2 24589999999999999999862 45777775 79999999999999999999986 999999999
Q ss_pred hhhhhcCCcc-----eEEEEEEEeCCChHHHHHH---HHHHhhhhhcccc
Q 006698 533 SRAYRLGQKR-----VVHVYHLITSETLEWDKLR---RQARKVWWSNMVF 574 (635)
Q Consensus 533 gR~~R~GQ~~-----~V~vy~li~~~tiEe~i~~---~~~~K~~~~~~~~ 574 (635)
||+.|.+..+ ..++|.|++++|.|+..-. +....+...-.++
T Consensus 582 GRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~qGY~~~vi 631 (732)
T TIGR00603 582 GRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQGYSFKVI 631 (732)
T ss_pred cccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHHCCCeeEEE
Confidence 9999998764 4899999999999987743 3333444444443
No 21
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=7e-40 Score=331.32 Aligned_cols=278 Identities=20% Similarity=0.276 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCC---CcEEEeCccchHHHH
Q 006698 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRC---RPVIIAPRSMLLTWE 149 (635)
Q Consensus 73 ~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~---~~LIv~P~~l~~qW~ 149 (635)
||++||.||+...... .........+||||||+||+|||+++++++..+....+.. ++|||||++++.||.
T Consensus 1 ~Q~~~v~~m~~~~~~~------~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~ 74 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVE------EYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWK 74 (299)
T ss_dssp HHHHHHHHHHHHH----------TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHH
T ss_pred CHHHHHHHHHHHhhhh------cccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhh
Confidence 8999999999986100 0112234578999999999999999999998776665544 589999999999999
Q ss_pred HHHHHhcC--CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhh
Q 006698 150 EEFKKWGI--DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG 227 (635)
Q Consensus 150 ~E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~ 227 (635)
.|+.+|.+ ++++..+.+.. .... ....+....+++|+||+.+...........
T Consensus 75 ~E~~~~~~~~~~~v~~~~~~~-----~~~~--------------------~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~ 129 (299)
T PF00176_consen 75 EEIEKWFDPDSLRVIIYDGDS-----ERRR--------------------LSKNQLPKYDVVITTYETLRKARKKKDKED 129 (299)
T ss_dssp HHHHHHSGT-TS-EEEESSSC-----HHHH--------------------TTSSSCCCSSEEEEEHHHHH--TSTHTTHH
T ss_pred hhhcccccccccccccccccc-----cccc--------------------ccccccccceeeeccccccccccccccccc
Confidence 99999983 56666665533 0000 011223578999999999983322233334
Q ss_pred hhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhhhhHhh
Q 006698 228 ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAK 307 (635)
Q Consensus 228 ~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~~~~~~ 307 (635)
+....|++||+||||++||..+..++++..+.+.++|+|||||++|++.|+|++++|+.|..+.....|.......
T Consensus 130 l~~~~~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~---- 205 (299)
T PF00176_consen 130 LKQIKWDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP---- 205 (299)
T ss_dssp HHTSEEEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH----
T ss_pred cccccceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh----
Confidence 4445699999999999999999999999999999999999999999999999999999999877665544333111
Q ss_pred hhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhh-----------
Q 006698 308 HASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGV----------- 376 (635)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~----------- 376 (635)
...........|+..+.+++.|+++.++...+|+..+.++.++|++.|+++|+.+...
T Consensus 206 -----------~~~~~~~~~~~L~~~l~~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~ 274 (299)
T PF00176_consen 206 -----------DKENSYENIERLRELLSEFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRK 274 (299)
T ss_dssp -----------HHTHHHHHHHHHHHHHCCCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--
T ss_pred -----------ccccccccccccccccchhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhccc
Confidence 0113456678999999999999999999889999999999999999999999986542
Q ss_pred -----hhHHHHHHHHhhhcCCCCCC
Q 006698 377 -----KSFVELNYCVSLLSVHPSLL 396 (635)
Q Consensus 377 -----~~~~~~~~~~~~~~~~p~l~ 396 (635)
...+.....++++|+||.++
T Consensus 275 ~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 275 KSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred chhhHHHHHHHHHHHHHHhCCcccC
Confidence 25666778899999999763
No 22
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.8e-37 Score=303.75 Aligned_cols=432 Identities=16% Similarity=0.140 Sum_probs=269.5
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~ 146 (635)
-+.|.||...+.-.+. ++++++.++|||||++|+.++..+++..+. ++|+++| +.|+.
T Consensus 14 ie~R~YQ~~i~a~al~--------------------~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~-kvlfLAPTKPLV~ 72 (542)
T COG1111 14 IEPRLYQLNIAAKALF--------------------KNTLVVLPTGLGKTFIAAMVIANRLRWFGG-KVLFLAPTKPLVL 72 (542)
T ss_pred ccHHHHHHHHHHHHhh--------------------cCeEEEecCCccHHHHHHHHHHHHHHhcCC-eEEEecCCchHHH
Confidence 3688999998887754 499999999999999999999989888876 8999999 88999
Q ss_pred HHHHHHHHhc--CCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchh
Q 006698 147 TWEEEFKKWG--IDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224 (635)
Q Consensus 147 qW~~E~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~ 224 (635)
|...-+.+.. |+..+..+.|......... . +....|++.|++++.++....
T Consensus 73 Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~-------------------------~-w~~~kVfvaTPQvveNDl~~G- 125 (542)
T COG1111 73 QHAEFCRKVTGIPEDEIAALTGEVRPEEREE-------------------------L-WAKKKVFVATPQVVENDLKAG- 125 (542)
T ss_pred HHHHHHHHHhCCChhheeeecCCCChHHHHH-------------------------H-HhhCCEEEeccHHHHhHHhcC-
Confidence 9998888873 4445555555332221111 1 246789999999999876442
Q ss_pred hhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhc---ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhH----HHHH
Q 006698 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRI---KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVL----RTVR 297 (635)
Q Consensus 225 ~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l---~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~----~~~~ 297 (635)
.+....+.+||+||||+.-+..+-.+-+=.-+ +..+.++||||| .++.+.+...+.-|.-+-..-. ...+
T Consensus 126 --rid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASP-Gs~~ekI~eV~~nLgIe~vevrTE~d~DV~ 202 (542)
T COG1111 126 --RIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASP-GSDLEKIQEVVENLGIEKVEVRTEEDPDVR 202 (542)
T ss_pred --ccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCC-CCCHHHHHHHHHhCCcceEEEecCCCccHH
Confidence 23334578999999999887665433332222 455799999999 3344444444443321100000 0001
Q ss_pred hhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhccccccccc-CCCceEEEEEeCCcHH-----------
Q 006698 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQES-LPGLRHSVVILQPDEF----------- 365 (635)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~-lp~~~~~~v~~~~s~~----------- 365 (635)
.|...... ......-+....+++..++..+..+.+..-... ++.... +-.-++...
T Consensus 203 ~Yv~~~kv-----------e~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~-~~~kdl~~~~~~~~~~a~~~ 270 (542)
T COG1111 203 PYVKKIKV-----------EWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSP-VSKKDLLELRQIRLIMAKNE 270 (542)
T ss_pred Hhhcccee-----------EEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCc-ccHhHHHHHHHHHHHhccCc
Confidence 11100000 001113345566777777766654422211000 010000 000000000
Q ss_pred HHHHHHHHhhhhhHHHHHH---------------HHhhh---cCCCCCCCc--cccccCcc--chHHHhhcccCccccch
Q 006698 366 QKRLCKAVEGVKSFVELNY---------------CVSLL---SVHPSLLPQ--QFFESFDV--DSAKLARLKLDPEAGIK 423 (635)
Q Consensus 366 q~~~y~~~~~~~~~~~~~~---------------~~~~~---~~~p~l~~~--~~~~~~~~--~~~~l~~~~~~~~~s~K 423 (635)
....|+.+.--...+...+ .+..+ +.. ..... ........ ....+.......-..||
T Consensus 271 ~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~-~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPK 349 (542)
T COG1111 271 DSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATK-GGSKAAKSLLADPYFKRALRLLIRADESGVEHPK 349 (542)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcc-cchHHHHHHhcChhhHHHHHHHHHhccccCCCcc
Confidence 1111111111000111111 11111 110 00000 00000000 00111122334446799
Q ss_pred HHHHHHHHHhc----CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEE-EEeC--------CCCHHHHHHHHHHhcCC
Q 006698 424 TRFLLILLELS----TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVL-YMDG--------KQDVKKRQSSINVLNDP 490 (635)
Q Consensus 424 ~~~l~~~l~~~----~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~-~i~G--------~~~~~~r~~~i~~F~~~ 490 (635)
+..+.+++.+. .+.|+|||++|+++++.|.++|.+. |.... ++-| +|+++++.+++++|++
T Consensus 350 l~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~-----~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~- 423 (542)
T COG1111 350 LEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKI-----GIKARVRFIGQASREGDKGMSQKEQKEIIDQFRK- 423 (542)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhc-----CCcceeEEeeccccccccccCHHHHHHHHHHHhc-
Confidence 99999988876 7789999999999999999999987 55553 5545 5889999999999998
Q ss_pred CCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhhh
Q 006698 491 SSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS 570 (635)
Q Consensus 491 ~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~~ 570 (635)
|.++||+ +|++|.||||++.++.||||||.-+|.+..||.||.+| ++.-+||.|+++||-|+..|....+|.+-.
T Consensus 424 -Ge~nVLV-aTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR---~r~Grv~vLvt~gtrdeayy~~s~rke~~m 498 (542)
T COG1111 424 -GEYNVLV-ATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGR---KRKGRVVVLVTEGTRDEAYYYSSRRKEQKM 498 (542)
T ss_pred -CCceEEE-EcccccccCCCCcccEEEEecCCcHHHHHHHhhCcccc---CCCCeEEEEEecCchHHHHHHHHHHHHHHH
Confidence 6688888 69999999999999999999999999999999999998 478899999999999999988888776654
Q ss_pred cccc
Q 006698 571 NMVF 574 (635)
Q Consensus 571 ~~~~ 574 (635)
...+
T Consensus 499 ~e~i 502 (542)
T COG1111 499 IESI 502 (542)
T ss_pred HHHH
Confidence 4443
No 23
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=4.8e-36 Score=339.74 Aligned_cols=431 Identities=15% Similarity=0.138 Sum_probs=262.9
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCc-cchHH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPR-SMLLT 147 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~q 147 (635)
++|+||.+.+..+++ +++|+++++|+|||++++.++...+ ..+.+++|||||. .|+.|
T Consensus 15 ~~r~yQ~~~~~~~l~--------------------~n~lv~~ptG~GKT~~a~~~i~~~l-~~~~~~vLvl~Pt~~L~~Q 73 (773)
T PRK13766 15 EARLYQQLLAATALK--------------------KNTLVVLPTGLGKTAIALLVIAERL-HKKGGKVLILAPTKPLVEQ 73 (773)
T ss_pred CccHHHHHHHHHHhc--------------------CCeEEEcCCCccHHHHHHHHHHHHH-HhCCCeEEEEeCcHHHHHH
Confidence 589999999987753 3899999999999999998887766 3456789999995 89999
Q ss_pred HHHHHHHhcCC--CcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhh
Q 006698 148 WEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225 (635)
Q Consensus 148 W~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~ 225 (635)
|.+++.++... .++..+.+.... ..... . ....+|+++|++.+......
T Consensus 74 ~~~~~~~~~~~~~~~v~~~~g~~~~-~~r~~------------------------~-~~~~~iiv~T~~~l~~~l~~--- 124 (773)
T PRK13766 74 HAEFFRKFLNIPEEKIVVFTGEVSP-EKRAE------------------------L-WEKAKVIVATPQVIENDLIA--- 124 (773)
T ss_pred HHHHHHHHhCCCCceEEEEeCCCCH-HHHHH------------------------H-HhCCCEEEECHHHHHHHHHc---
Confidence 99999987531 233333332111 00000 0 13568999999988765422
Q ss_pred hhhhccCCCEEEEeCCCcCCCcccHHHHHHHhc---ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhh
Q 006698 226 SGILLDLPGLFVFDEGHTPRNDDTCMFKALSRI---KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302 (635)
Q Consensus 226 ~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l---~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~ 302 (635)
..+....|++||+||||++.+..+..+-+-... +..++++|||||..+ ...+..++.-+......... .+...
T Consensus 125 ~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~---~~~~~ 200 (773)
T PRK13766 125 GRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRT---EDDPD 200 (773)
T ss_pred CCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcC---CCChh
Confidence 123345689999999999987655433222211 455699999999765 45555555544321110000 00000
Q ss_pred hhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccc-cCCCceEEEEEeCCcHHHHHHHHHHhhhh----
Q 006698 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQE-SLPGLRHSVVILQPDEFQKRLCKAVEGVK---- 377 (635)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~-~lp~~~~~~v~~~~s~~q~~~y~~~~~~~---- 377 (635)
+........ . .............++..+..++.++.+..... ..++....+...++...++.++..+....
T Consensus 201 v~~~~~~~~---v-~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 276 (773)
T PRK13766 201 VKPYVHKVK---I-EWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGY 276 (773)
T ss_pred HHhhhccce---e-EEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHH
Confidence 000000000 0 00001223445566666666665543322111 11111111111112222222222221100
Q ss_pred -------------------------hHHHHHHHHhhhcCCCCCCCccccccCccch---HHHhhcccCccccchHHHHHH
Q 006698 378 -------------------------SFVELNYCVSLLSVHPSLLPQQFFESFDVDS---AKLARLKLDPEAGIKTRFLLI 429 (635)
Q Consensus 378 -------------------------~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~---~~l~~~~~~~~~s~K~~~l~~ 429 (635)
........+.....++..... ......+. ..+..........+|+..|.+
T Consensus 277 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~ 354 (773)
T PRK13766 277 EAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKA--SKRLVEDPRFRKAVRKAKELDIEHPKLEKLRE 354 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHH--HHHHHhCHHHHHHHHHHHhcccCChHHHHHHH
Confidence 000000000100000000000 00000000 111122222445789999999
Q ss_pred HHHh----cCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCC--------CCHHHHHHHHHHhcCCCCCcEEE
Q 006698 430 LLEL----STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGK--------QDVKKRQSSINVLNDPSSQARIM 497 (635)
Q Consensus 430 ~l~~----~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~--------~~~~~r~~~i~~F~~~~~~~~vl 497 (635)
+|.. .++.|+||||++.++++.|.+.|... |+.+..++|. ++..+|.+++++|++ +..+||
T Consensus 355 il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~--g~~~vL 427 (773)
T PRK13766 355 IVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE-----GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRA--GEFNVL 427 (773)
T ss_pred HHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC-----CCceEEEEccccccccCCCCHHHHHHHHHHHHc--CCCCEE
Confidence 9876 37899999999999999999999776 8999999987 888899999999998 457776
Q ss_pred EEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhhh
Q 006698 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWS 570 (635)
Q Consensus 498 l~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~~ 570 (635)
+ +|+++++|+|++.|++||+||++||+.++.||.||++|.|+ +.||.|++++|.||.+|....+|.+.+
T Consensus 428 v-aT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 428 V-STSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred E-ECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 6 68999999999999999999999999999999999999775 678999999999999887766555544
No 24
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-36 Score=326.79 Aligned_cols=139 Identities=27% Similarity=0.272 Sum_probs=118.4
Q ss_pred cchHHHHHHHHHhc----CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEE
Q 006698 421 GIKTRFLLILLELS----TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARI 496 (635)
Q Consensus 421 s~K~~~l~~~l~~~----~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~v 496 (635)
++|+..+...+... ..+|||+|+++...++.++..+..+ ++......++ ++-...+..|.. +.|
T Consensus 1202 g~kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N-----~I~~~~~~~t---~d~~dc~~~fk~----I~c 1269 (1394)
T KOG0298|consen 1202 GTKIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMN-----LIKKQLDGET---EDFDDCIICFKS----IDC 1269 (1394)
T ss_pred ccCchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHhh-----hhHhhhccCC---cchhhhhhhccc----ceE
Confidence 45666654433322 5689999999999999999999987 8877666553 445667888875 889
Q ss_pred EEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhhhc
Q 006698 497 MLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSN 571 (635)
Q Consensus 497 ll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~~~ 571 (635)
|++.++.++-|+||..|.+|+..+|--||+.+.||+||+||+||++++.||+|+..+|+|+.|+.....|.....
T Consensus 1270 lll~~~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~ee~l~ 1344 (1394)
T KOG0298|consen 1270 LLLFVSKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITSKEETLT 1344 (1394)
T ss_pred EEEEeccCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhhhHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999998877765544
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=4.9e-31 Score=275.78 Aligned_cols=364 Identities=18% Similarity=0.203 Sum_probs=252.4
Q ss_pred hHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-cc
Q 006698 65 DVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RS 143 (635)
Q Consensus 65 ~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~ 143 (635)
.....|||||.+++.-++..+.. .+.+++..++|+|||++++.++..+ ..++||||| ..
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~~~---------------~~~gvivlpTGaGKT~va~~~~~~~-----~~~~Lvlv~~~~ 91 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNRRT---------------ERRGVIVLPTGAGKTVVAAEAIAEL-----KRSTLVLVPTKE 91 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhccc---------------CCceEEEeCCCCCHHHHHHHHHHHh-----cCCEEEEECcHH
Confidence 45567999999999988775321 5689999999999999999998765 234999999 78
Q ss_pred chHHHHHHHHHhcCCC-cccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccC-CCeEEeeHHHHHHhhc
Q 006698 144 MLLTWEEEFKKWGIDI-PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMG-TGILGLSYRLFEKLVS 221 (635)
Q Consensus 144 l~~qW~~E~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vvi~ty~~~~~~~~ 221 (635)
|+.||.+.+.++...- .+..+.+ ... ... ..|.+.||+++.+..
T Consensus 92 L~~Qw~~~~~~~~~~~~~~g~~~~-----~~~----------------------------~~~~~~i~vat~qtl~~~~- 137 (442)
T COG1061 92 LLDQWAEALKKFLLLNDEIGIYGG-----GEK----------------------------ELEPAKVTVATVQTLARRQ- 137 (442)
T ss_pred HHHHHHHHHHHhcCCccccceecC-----cee----------------------------ccCCCcEEEEEhHHHhhhh-
Confidence 8899998888775321 1111111 100 112 469999999987742
Q ss_pred chhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCc-EEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhh
Q 006698 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRR-RIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300 (635)
Q Consensus 222 ~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~-~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~ 300 (635)
.+..+..+.|++||+||||++..+... ..+..+...+ +++|||||...+...+..+..++
T Consensus 138 --~l~~~~~~~~~liI~DE~Hh~~a~~~~--~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~--------------- 198 (442)
T COG1061 138 --LLDEFLGNEFGLIIFDEVHHLPAPSYR--RILELLSAAYPRLGLTATPEREDGGRIGDLFDLI--------------- 198 (442)
T ss_pred --hhhhhcccccCEEEEEccccCCcHHHH--HHHHhhhcccceeeeccCceeecCCchhHHHHhc---------------
Confidence 233455567999999999998654322 2333345555 99999999644333333222222
Q ss_pred hhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhccccc-cc-ccCCCceEEEEEeCCcHHHHHHHHHHhhhhh
Q 006698 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTV-LQ-ESLPGLRHSVVILQPDEFQKRLCKAVEGVKS 378 (635)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~-~~-~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~ 378 (635)
.+.+......+ +. ..|.+.....+.+.++......|........
T Consensus 199 ----------------------------------g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~ 244 (442)
T COG1061 199 ----------------------------------GPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFR 244 (442)
T ss_pred ----------------------------------CCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhh
Confidence 22222222111 11 3567777778888888887777766443221
Q ss_pred -HHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc-CCCeEEEEcCChhHHHHHHHHH
Q 006698 379 -FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS-TNEKVLVFSQYIEPLTLIMEQL 456 (635)
Q Consensus 379 -~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~-~~~kviIFs~~~~~~~~l~~~L 456 (635)
.+.....+ ...-...........|...+..++... .+.+++||+.+...+..+...+
T Consensus 245 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~ 303 (442)
T COG1061 245 ELLRARGTL---------------------RAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLF 303 (442)
T ss_pred hhhhhhhhh---------------------hHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHh
Confidence 11110000 000111111223455777778887766 6899999999999999999999
Q ss_pred HhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhh
Q 006698 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAY 536 (635)
Q Consensus 457 ~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~ 536 (635)
... |+ +..++|.++..+|..+++.|+.+ +..+++ +++++.||+|+++++++|+..+.-++..+.|++||+.
T Consensus 304 ~~~-----~~-~~~it~~t~~~eR~~il~~fr~g--~~~~lv-~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~L 374 (442)
T COG1061 304 LAP-----GI-VEAITGETPKEEREAILERFRTG--GIKVLV-TVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGL 374 (442)
T ss_pred cCC-----Cc-eEEEECCCCHHHHHHHHHHHHcC--CCCEEE-EeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhc
Confidence 875 66 89999999999999999999983 355555 7999999999999999999999999999999999999
Q ss_pred hc-CCcc--eEEEEEEEeCCChHHHHHHHHHH
Q 006698 537 RL-GQKR--VVHVYHLITSETLEWDKLRRQAR 565 (635)
Q Consensus 537 R~-GQ~~--~V~vy~li~~~tiEe~i~~~~~~ 565 (635)
|. ..+. .+..|-++..++.+..+......
T Consensus 375 R~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 375 RPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred cCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 94 3333 37888888888888776655443
No 26
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=2.8e-31 Score=278.02 Aligned_cols=442 Identities=15% Similarity=0.172 Sum_probs=255.6
Q ss_pred HhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccch
Q 006698 67 RKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSML 145 (635)
Q Consensus 67 ~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~ 145 (635)
...||+||.+-+..++ ++++|+|.+||+|||++|+.++..+++..+.++++++|| ..|+
T Consensus 60 ~~~lR~YQ~eivq~AL--------------------gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv 119 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL--------------------GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLV 119 (746)
T ss_pred cccccHHHHHHhHHhh--------------------cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHH
Confidence 3469999999998775 569999999999999999999999999999999999999 6788
Q ss_pred HHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhh
Q 006698 146 LTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225 (635)
Q Consensus 146 ~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~ 225 (635)
.|....+..++.+-.+....+.......... .....+|+++|.+.+.+.+.....
T Consensus 120 ~QQ~a~~~~~~~~~~~T~~l~~~~~~~~r~~-------------------------i~~s~~vff~TpQil~ndL~~~~~ 174 (746)
T KOG0354|consen 120 NQQIACFSIYLIPYSVTGQLGDTVPRSNRGE-------------------------IVASKRVFFRTPQILENDLKSGLH 174 (746)
T ss_pred HHHHHHHhhccCcccceeeccCccCCCchhh-------------------------hhcccceEEeChHhhhhhcccccc
Confidence 8888888877644333333222111111111 124678999999999988766433
Q ss_pred hhhhccCCCEEEEeCCCcCCCcc--cHHHHHHHhc--ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhh
Q 006698 226 SGILLDLPGLFVFDEGHTPRNDD--TCMFKALSRI--KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301 (635)
Q Consensus 226 ~~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~l--~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~ 301 (635)
.. ...|.++||||||+..... +...+.+..+ ...+.|+|||||- ++.+.+.+.+.-|... +..... .....
T Consensus 175 ~~--ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~as-ldvr~~-ssi~~ 249 (746)
T KOG0354|consen 175 DE--LSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCAS-LDVRTE-SSIKS 249 (746)
T ss_pred cc--cceEEEEEEcccccccccccHHHHHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhhee-cccchh-hhhhh
Confidence 33 3458899999999975432 3333334443 3447899999997 5555555544444332 111100 00000
Q ss_pred hhhHh-hhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeC--CcHHHHHHHHHHhhhh-
Q 006698 302 EISKA-KHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQ--PDEFQKRLCKAVEGVK- 377 (635)
Q Consensus 302 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~--~s~~q~~~y~~~~~~~- 377 (635)
.+... ......-++.. ........+...+.|++.+-... .+.+.....-... ....++..+.......
T Consensus 250 ~y~~lr~~~~i~v~~~~----~~~~~~~~f~~~i~p~l~~l~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 321 (746)
T KOG0354|consen 250 NYEELREHVQIPVDLSL----CERDIEDPFGMIIEPLLQQLQEE----GLIEISDKSTSYEQWVVQAEKAAAPNGPENQR 321 (746)
T ss_pred hHHHHhccCcccCcHHH----hhhhhhhhHHHHHHHHHHHHHhc----CccccccccccccchhhhhhhhhccCCCccch
Confidence 00000 00000000000 11122234444555554432211 1111111000000 0001111111000000
Q ss_pred ------------hHHHHHHHHh------hhcC-CCCCCCcc----ccc-----cCccchHHHhhcccCcc-ccchHHHHH
Q 006698 378 ------------SFVELNYCVS------LLSV-HPSLLPQQ----FFE-----SFDVDSAKLARLKLDPE-AGIKTRFLL 428 (635)
Q Consensus 378 ------------~~~~~~~~~~------~~~~-~p~l~~~~----~~~-----~~~~~~~~l~~~~~~~~-~s~K~~~l~ 428 (635)
..+.....+| .+-+ ++...... ..+ ........++.+..++. ..+|++.+.
T Consensus 322 ~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~ 401 (746)
T KOG0354|consen 322 NCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLV 401 (746)
T ss_pred hhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHH
Confidence 0000000111 0000 00000000 000 00000112233333333 688999999
Q ss_pred HHHHhc----CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeC--------CCCHHHHHHHHHHhcCCCCCcEE
Q 006698 429 ILLELS----TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDG--------KQDVKKRQSSINVLNDPSSQARI 496 (635)
Q Consensus 429 ~~l~~~----~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G--------~~~~~~r~~~i~~F~~~~~~~~v 496 (635)
+++.+. +..++|||+.++..++.|..+|.+.. ..|++...+.| ++++.+.+++++.|++ |+.+|
T Consensus 402 ~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~--~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~--G~~Nv 477 (746)
T KOG0354|consen 402 EILVEQFEQNPDSRTIIFVETRESALALKKWLLQLH--ELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRD--GEINV 477 (746)
T ss_pred HHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhh--hcccccceeeeccccccccccCHHHHHHHHHHHhC--CCccE
Confidence 888765 78899999999999999999998521 13667666666 5788899999999998 77888
Q ss_pred EEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhhhcccccc
Q 006698 497 MLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPS 576 (635)
Q Consensus 497 ll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~~~~~~~~ 576 (635)
|+ +|++|.||||+..||.||.||..-||..+.||.|| +|- +.-+++.+.+ +.-+...-.....|..+....+..
T Consensus 478 LV-ATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa---~ns~~vll~t-~~~~~~~E~~~~~~e~lm~~~i~~ 551 (746)
T KOG0354|consen 478 LV-ATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA---RNSKCVLLTT-GSEVIEFERNNLAKEKLMNQTISK 551 (746)
T ss_pred EE-EecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc---cCCeEEEEEc-chhHHHHHHHHHhHHHHHHHHHHH
Confidence 88 59999999999999999999999999999999999 774 4555555555 443333333344455555544443
No 27
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=2.2e-31 Score=284.35 Aligned_cols=336 Identities=16% Similarity=0.218 Sum_probs=219.0
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~ 146 (635)
..|+|||.+++..++. ++++++..++|+|||++++.++..+... ...++||||| ..|+.
T Consensus 113 ~~~r~~Q~~av~~~l~-------------------~~~~il~apTGsGKT~i~~~l~~~~~~~-~~~~vLilvpt~eL~~ 172 (501)
T PHA02558 113 IEPHWYQYDAVYEGLK-------------------NNRRLLNLPTSAGKSLIQYLLSRYYLEN-YEGKVLIIVPTTSLVT 172 (501)
T ss_pred CCCCHHHHHHHHHHHh-------------------cCceEEEeCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECcHHHHH
Confidence 5799999999987754 4578999999999999887765444433 3348999999 78999
Q ss_pred HHHHHHHHhcCC--CcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchh
Q 006698 147 TWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224 (635)
Q Consensus 147 qW~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~ 224 (635)
||.+++.+|... ..+..+. .|... ....+|+|+|++.+.+...
T Consensus 173 Q~~~~l~~~~~~~~~~~~~i~----~g~~~----------------------------~~~~~I~VaT~qsl~~~~~--- 217 (501)
T PHA02558 173 QMIDDFVDYRLFPREAMHKIY----SGTAK----------------------------DTDAPIVVSTWQSAVKQPK--- 217 (501)
T ss_pred HHHHHHHHhccccccceeEEe----cCccc----------------------------CCCCCEEEeeHHHHhhchh---
Confidence 999999997521 1111110 11100 1246899999988765321
Q ss_pred hhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhhh
Q 006698 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREI 303 (635)
Q Consensus 225 ~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~~ 303 (635)
.....+++||+||||++... .....+..+ +++++++|||||....... ..+..++.|-...
T Consensus 218 ---~~~~~~~~iIvDEaH~~~~~--~~~~il~~~~~~~~~lGLTATp~~~~~~~-~~~~~~fG~i~~~------------ 279 (501)
T PHA02558 218 ---EWFDQFGMVIVDECHLFTGK--SLTSIITKLDNCKFKFGLTGSLRDGKANI-LQYVGLFGDIFKP------------ 279 (501)
T ss_pred ---hhccccCEEEEEchhcccch--hHHHHHHhhhccceEEEEeccCCCccccH-HHHHHhhCCceEE------------
Confidence 12346899999999999753 244555666 5788999999995332211 1111111110000
Q ss_pred hHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHHHHH
Q 006698 304 SKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN 383 (635)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~~~~ 383 (635)
. ...++.+ . ..+.+.....+.+..++.....+ .. . .. .
T Consensus 280 ------------------v---~~~~li~--~------------g~l~~~~~~~v~~~~~~~~~~~~---~~-~-~~--~ 317 (501)
T PHA02558 280 ------------------V---TTSQLME--E------------GQVTDLKINSIFLRYPDEDRVKL---KG-E-DY--Q 317 (501)
T ss_pred ------------------e---cHHHHHh--C------------CCcCCceEEEEeccCCHHHhhhh---cc-c-ch--H
Confidence 0 0000100 0 01111112222233222111000 00 0 00 0
Q ss_pred HHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhc
Q 006698 384 YCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFN 461 (635)
Q Consensus 384 ~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~ 461 (635)
.....++ ....+...+..++... .+.+++||+..+..++.|.+.|...
T Consensus 318 ~~~~~l~----------------------------~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~-- 367 (501)
T PHA02558 318 EEIKYIT----------------------------SHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKV-- 367 (501)
T ss_pred HHHHHHh----------------------------ccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHc--
Confidence 0000000 0122344444444333 6788999999999999999999987
Q ss_pred ccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCc
Q 006698 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQK 541 (635)
Q Consensus 462 ~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~ 541 (635)
|.++..++|+++.++|..+++.|++ +...|+|+|++..++|+|++.+++||+++|+.+...+.|++||++|.|..
T Consensus 368 ---g~~v~~i~G~~~~~eR~~i~~~~~~--~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~ 442 (501)
T PHA02558 368 ---YDKVYYVSGEVDTEDRNEMKKIAEG--GKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGS 442 (501)
T ss_pred ---CCCEEEEeCCCCHHHHHHHHHHHhC--CCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCC
Confidence 9999999999999999999999986 55778887779999999999999999999999999999999999999987
Q ss_pred c-eEEEEEEEeCC
Q 006698 542 R-VVHVYHLITSE 553 (635)
Q Consensus 542 ~-~V~vy~li~~~ 553 (635)
| .+.||.|+-.-
T Consensus 443 K~~~~i~D~vD~~ 455 (501)
T PHA02558 443 KSIATVWDIIDDL 455 (501)
T ss_pred CceEEEEEeeccc
Confidence 7 89999998643
No 28
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.97 E-value=1.7e-28 Score=261.42 Aligned_cols=316 Identities=18% Similarity=0.250 Sum_probs=216.1
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCC-CCCcEEEeC-ccchH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP-RCRPVIIAP-RSMLL 146 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~-~~~~LIv~P-~~l~~ 146 (635)
++.|+|.+++..+++ ++.+|+..++|+|||...+..+...+.... ...+||+|| ..|..
T Consensus 26 ~~t~iQ~~ai~~~l~-------------------g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~ 86 (460)
T PRK11776 26 EMTPIQAQSLPAILA-------------------GKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELAD 86 (460)
T ss_pred CCCHHHHHHHHHHhc-------------------CCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHH
Confidence 588999999998864 668999999999999876655555443332 235799999 77889
Q ss_pred HHHHHHHHhc---CCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcch
Q 006698 147 TWEEEFKKWG---IDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD 223 (635)
Q Consensus 147 qW~~E~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~ 223 (635)
||.+++.++. +++.+..+.+....+. . .. ......+|+|+|++.+.......
T Consensus 87 Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~----~---~~------------------~l~~~~~IvV~Tp~rl~~~l~~~ 141 (460)
T PRK11776 87 QVAKEIRRLARFIPNIKVLTLCGGVPMGP----Q---ID------------------SLEHGAHIIVGTPGRILDHLRKG 141 (460)
T ss_pred HHHHHHHHHHhhCCCcEEEEEECCCChHH----H---HH------------------HhcCCCCEEEEChHHHHHHHHcC
Confidence 9999998874 2444444333211110 0 00 11246789999999987765431
Q ss_pred hhhhhhccCCCEEEEeCCCcCCCcc--cHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhh
Q 006698 224 ELSGILLDLPGLFVFDEGHTPRNDD--TCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300 (635)
Q Consensus 224 ~~~~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~ 300 (635)
.+....+++||+||||++-..+ ......+..+ .....+++|||+- .++..+...+ .
T Consensus 142 ---~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~----~~~~~l~~~~--------------~ 200 (460)
T PRK11776 142 ---TLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYP----EGIAAISQRF--------------Q 200 (460)
T ss_pred ---CccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCc----HHHHHHHHHh--------------c
Confidence 2233457999999999976543 2233344444 3456899999972 1111111000 0
Q ss_pred hhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHH
Q 006698 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFV 380 (635)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~ 380 (635)
. .+....... ....+......+.+
T Consensus 201 ~---------------------------------~~~~i~~~~---~~~~~~i~~~~~~~-------------------- 224 (460)
T PRK11776 201 R---------------------------------DPVEVKVES---THDLPAIEQRFYEV-------------------- 224 (460)
T ss_pred C---------------------------------CCEEEEECc---CCCCCCeeEEEEEe--------------------
Confidence 0 000000000 00011111111111
Q ss_pred HHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhh
Q 006698 381 ELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460 (635)
Q Consensus 381 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~ 460 (635)
....|...+..++....+.++||||+....++.+.+.|...
T Consensus 225 --------------------------------------~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~- 265 (460)
T PRK11776 225 --------------------------------------SPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQ- 265 (460)
T ss_pred --------------------------------------CcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhC-
Confidence 01226667777777667789999999999999999999987
Q ss_pred cccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCC
Q 006698 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQ 540 (635)
Q Consensus 461 ~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ 540 (635)
|+.+..++|++++.+|+.+++.|++ +..+||| +|+++++|||++++++||+||+|.++..|.||+||++|.|+
T Consensus 266 ----~~~v~~~hg~~~~~eR~~~l~~F~~--g~~~vLV-aTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~ 338 (460)
T PRK11776 266 ----GFSALALHGDLEQRDRDQVLVRFAN--RSCSVLV-ATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGS 338 (460)
T ss_pred ----CCcEEEEeCCCCHHHHHHHHHHHHc--CCCcEEE-EecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCC
Confidence 9999999999999999999999997 5677777 69999999999999999999999999999999999999996
Q ss_pred cceEEEEEEEeCC
Q 006698 541 KRVVHVYHLITSE 553 (635)
Q Consensus 541 ~~~V~vy~li~~~ 553 (635)
. ...|.|+..+
T Consensus 339 ~--G~ai~l~~~~ 349 (460)
T PRK11776 339 K--GLALSLVAPE 349 (460)
T ss_pred c--ceEEEEEchh
Confidence 5 4456676654
No 29
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=8.7e-28 Score=256.65 Aligned_cols=319 Identities=18% Similarity=0.207 Sum_probs=210.2
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCC--------CCCcEEE
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP--------RCRPVII 139 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~--------~~~~LIv 139 (635)
..++|||.+++..+++ ++++|++.++|+|||+..+..+...+...+ ..++|||
T Consensus 108 ~~~~~iQ~~ai~~~~~-------------------G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil 168 (475)
T PRK01297 108 PYCTPIQAQVLGYTLA-------------------GHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALII 168 (475)
T ss_pred CCCCHHHHHHHHHHhC-------------------CCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEE
Confidence 3589999999998754 678999999999999877654444332222 2457999
Q ss_pred eC-ccchHHHHHHHHHhcCC--CcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHH
Q 006698 140 AP-RSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLF 216 (635)
Q Consensus 140 ~P-~~l~~qW~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~ 216 (635)
+| ..|..|+.+++..+... +++..+.+.. ...... ... .....+|+|+|++.+
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~----~~~~~~---~~~-----------------~~~~~~Iiv~TP~~L 224 (475)
T PRK01297 169 APTRELVVQIAKDAAALTKYTGLNVMTFVGGM----DFDKQL---KQL-----------------EARFCDILVATPGRL 224 (475)
T ss_pred eCcHHHHHHHHHHHHHhhccCCCEEEEEEccC----ChHHHH---HHH-----------------hCCCCCEEEECHHHH
Confidence 99 78889999999887543 3333332211 110000 000 013568999999998
Q ss_pred HHhhcchhhhhhhccCCCEEEEeCCCcCCCccc--HHHHHHHhcc---cCcEEEEecccCCCChhhHHHHHHhhhhhhhh
Q 006698 217 EKLVSGDELSGILLDLPGLFVFDEGHTPRNDDT--CMFKALSRIK---TRRRIILSGTPFQNNFQELENTLSLVRQEFGE 291 (635)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~s--~~~~~l~~l~---~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~ 291 (635)
...... ........++|||||||.+.+..- ...+.+..+. ....+++|||... ++..+...+
T Consensus 225 l~~~~~---~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~----~~~~~~~~~------ 291 (475)
T PRK01297 225 LDFNQR---GEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTD----DVMNLAKQW------ 291 (475)
T ss_pred HHHHHc---CCcccccCceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCH----HHHHHHHHh------
Confidence 665432 123344578999999999876432 2233333332 3468999999521 111111000
Q ss_pred hHHHHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHH
Q 006698 292 VLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCK 371 (635)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~ 371 (635)
. ..+.......... ..+.....+..+
T Consensus 292 --------~---------------------------------~~~~~v~~~~~~~--~~~~~~~~~~~~----------- 317 (475)
T PRK01297 292 --------T---------------------------------TDPAIVEIEPENV--ASDTVEQHVYAV----------- 317 (475)
T ss_pred --------c---------------------------------cCCEEEEeccCcC--CCCcccEEEEEe-----------
Confidence 0 0000000000000 000000001000
Q ss_pred HHhhhhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHH
Q 006698 372 AVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTL 451 (635)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~ 451 (635)
..+.|...+..++......++||||+.+..++.
T Consensus 318 -----------------------------------------------~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~ 350 (475)
T PRK01297 318 -----------------------------------------------AGSDKYKLLYNLVTQNPWERVMVFANRKDEVRR 350 (475)
T ss_pred -----------------------------------------------cchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHH
Confidence 112355566666666667899999999999999
Q ss_pred HHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhh
Q 006698 452 IMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531 (635)
Q Consensus 452 l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa 531 (635)
+.+.|... |+.+..++|+++.++|.++++.|++ |+++||+ +|+++++|||+.++++||+||+|+++..+.||
T Consensus 351 l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~Fr~--G~~~vLv-aT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr 422 (475)
T PRK01297 351 IEERLVKD-----GINAAQLSGDVPQHKRIKTLEGFRE--GKIRVLV-ATDVAGRGIHIDGISHVINFTLPEDPDDYVHR 422 (475)
T ss_pred HHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHhC--CCCcEEE-EccccccCCcccCCCEEEEeCCCCCHHHHHHh
Confidence 99999876 8999999999999999999999997 6677777 69999999999999999999999999999999
Q ss_pred hhhhhhcCCcceEEEEEEEeCC
Q 006698 532 ISRAYRLGQKRVVHVYHLITSE 553 (635)
Q Consensus 532 ~gR~~R~GQ~~~V~vy~li~~~ 553 (635)
.||++|.|+.- .++.|+.++
T Consensus 423 ~GRaGR~g~~g--~~i~~~~~~ 442 (475)
T PRK01297 423 IGRTGRAGASG--VSISFAGED 442 (475)
T ss_pred hCccCCCCCCc--eEEEEecHH
Confidence 99999999754 445555544
No 30
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.96 E-value=3.5e-28 Score=257.76 Aligned_cols=328 Identities=17% Similarity=0.216 Sum_probs=213.8
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCC-------CCCcEEEe
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP-------RCRPVIIA 140 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~-------~~~~LIv~ 140 (635)
..+.|+|.+++..+++ ++++|+..++|+|||+..+..+...+.... ..++||||
T Consensus 22 ~~pt~iQ~~ai~~il~-------------------g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~ 82 (456)
T PRK10590 22 REPTPIQQQAIPAVLE-------------------GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILT 82 (456)
T ss_pred CCCCHHHHHHHHHHhC-------------------CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEe
Confidence 3689999999998864 568999999999999887766555443221 12479999
Q ss_pred C-ccchHHHHHHHHHhcCCCc--ccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHH
Q 006698 141 P-RSMLLTWEEEFKKWGIDIP--FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFE 217 (635)
Q Consensus 141 P-~~l~~qW~~E~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~ 217 (635)
| ..|..||.+++.++..... +..+.+. ....... . .+....+|+|+|++.+.
T Consensus 83 PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg----~~~~~~~---~------------------~l~~~~~IiV~TP~rL~ 137 (456)
T PRK10590 83 PTRELAAQIGENVRDYSKYLNIRSLVVFGG----VSINPQM---M------------------KLRGGVDVLVATPGRLL 137 (456)
T ss_pred CcHHHHHHHHHHHHHHhccCCCEEEEEECC----cCHHHHH---H------------------HHcCCCcEEEEChHHHH
Confidence 9 7788999999998754332 2222111 1000000 0 11346789999999887
Q ss_pred HhhcchhhhhhhccCCCEEEEeCCCcCCCcc--cHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHH
Q 006698 218 KLVSGDELSGILLDLPGLFVFDEGHTPRNDD--TCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294 (635)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~ 294 (635)
...... .+.....++|||||||++-... ......+..+ .....+++|||+-. ...++ ...+..
T Consensus 138 ~~~~~~---~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~-~~~~l---~~~~~~------- 203 (456)
T PRK10590 138 DLEHQN---AVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSD-DIKAL---AEKLLH------- 203 (456)
T ss_pred HHHHcC---CcccccceEEEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcH-HHHHH---HHHHcC-------
Confidence 655331 2234457899999999986543 1223334445 34458999999621 11111 100000
Q ss_pred HHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHh
Q 006698 295 TVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVE 374 (635)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~ 374 (635)
.+......... ...+.....+..++
T Consensus 204 ----------------------------------------~~~~i~~~~~~--~~~~~i~~~~~~~~------------- 228 (456)
T PRK10590 204 ----------------------------------------NPLEIEVARRN--TASEQVTQHVHFVD------------- 228 (456)
T ss_pred ----------------------------------------CCeEEEEeccc--ccccceeEEEEEcC-------------
Confidence 00000000000 00000011111110
Q ss_pred hhhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHH
Q 006698 375 GVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIME 454 (635)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~ 454 (635)
...|...+..++......++||||+....++.+.+
T Consensus 229 ---------------------------------------------~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~ 263 (456)
T PRK10590 229 ---------------------------------------------KKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAE 263 (456)
T ss_pred ---------------------------------------------HHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHH
Confidence 01133445555555566799999999999999999
Q ss_pred HHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhh
Q 006698 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISR 534 (635)
Q Consensus 455 ~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR 534 (635)
.|... |+.+..++|+++.++|..+++.|++ +.++||| +|+++++|||++++++||+||+|.++..|.||+||
T Consensus 264 ~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~--g~~~iLV-aTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GR 335 (456)
T PRK10590 264 QLNKD-----GIRSAAIHGNKSQGARTRALADFKS--GDIRVLV-ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGR 335 (456)
T ss_pred HHHHC-----CCCEEEEECCCCHHHHHHHHHHHHc--CCCcEEE-EccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccc
Confidence 99886 9999999999999999999999997 6678777 69999999999999999999999999999999999
Q ss_pred hhhcCCcceEEEEEEEeCCChHHHHHHHHHH
Q 006698 535 AYRLGQKRVVHVYHLITSETLEWDKLRRQAR 565 (635)
Q Consensus 535 ~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~ 565 (635)
++|.|..-. .+.|++.+ |..++...++
T Consensus 336 aGR~g~~G~--ai~l~~~~--d~~~~~~ie~ 362 (456)
T PRK10590 336 TGRAAATGE--ALSLVCVD--EHKLLRDIEK 362 (456)
T ss_pred cccCCCCee--EEEEecHH--HHHHHHHHHH
Confidence 999997643 34455543 4445544443
No 31
>PTZ00110 helicase; Provisional
Probab=99.96 E-value=8.2e-28 Score=258.57 Aligned_cols=321 Identities=20% Similarity=0.248 Sum_probs=209.4
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC------CCCCcEEEeC-
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH------PRCRPVIIAP- 141 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~------~~~~~LIv~P- 141 (635)
++.|+|.+++..++. ++.+|+..++|+|||+..+.-+....... ....+|||||
T Consensus 152 ~pt~iQ~~aip~~l~-------------------G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PT 212 (545)
T PTZ00110 152 EPTPIQVQGWPIALS-------------------GRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPT 212 (545)
T ss_pred CCCHHHHHHHHHHhc-------------------CCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECCh
Confidence 589999999987754 67999999999999988654332222211 1223699999
Q ss_pred ccchHHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhc
Q 006698 142 RSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221 (635)
Q Consensus 142 ~~l~~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~ 221 (635)
..|..|+.+++.++.....+..... +.+....... . ......+|+|+|++.+...+.
T Consensus 213 reLa~Qi~~~~~~~~~~~~i~~~~~--~gg~~~~~q~---~------------------~l~~~~~IlVaTPgrL~d~l~ 269 (545)
T PTZ00110 213 RELAEQIREQCNKFGASSKIRNTVA--YGGVPKRGQI---Y------------------ALRRGVEILIACPGRLIDFLE 269 (545)
T ss_pred HHHHHHHHHHHHHHhcccCccEEEE--eCCCCHHHHH---H------------------HHHcCCCEEEECHHHHHHHHH
Confidence 7788999999999865433221110 1111111110 0 112457899999998876653
Q ss_pred chhhhhhhccCCCEEEEeCCCcCCCcc--cHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHh
Q 006698 222 GDELSGILLDLPGLFVFDEGHTPRNDD--TCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK 298 (635)
Q Consensus 222 ~~~~~~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~ 298 (635)
.. .......++||+||||++.... .+..+.+..+ +....+++|||. +.++..+...+..
T Consensus 270 ~~---~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~----p~~v~~l~~~l~~----------- 331 (545)
T PTZ00110 270 SN---VTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATW----PKEVQSLARDLCK----------- 331 (545)
T ss_pred cC---CCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCC----CHHHHHHHHHHhc-----------
Confidence 31 1223457899999999987543 2334444445 455679999995 1222111110000
Q ss_pred hhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhh
Q 006698 299 SGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKS 378 (635)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~ 378 (635)
. .+.........+ ...+.....+..++
T Consensus 332 ---------------------------------~--~~v~i~vg~~~l-~~~~~i~q~~~~~~----------------- 358 (545)
T PTZ00110 332 ---------------------------------E--EPVHVNVGSLDL-TACHNIKQEVFVVE----------------- 358 (545)
T ss_pred ---------------------------------c--CCEEEEECCCcc-ccCCCeeEEEEEEe-----------------
Confidence 0 000000000000 00000001111110
Q ss_pred HHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHH
Q 006698 379 FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQL 456 (635)
Q Consensus 379 ~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L 456 (635)
...|...|.+++... .+.++||||+....++.|.+.|
T Consensus 359 -----------------------------------------~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L 397 (545)
T PTZ00110 359 -----------------------------------------EHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKEL 397 (545)
T ss_pred -----------------------------------------chhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHH
Confidence 122444555555544 5789999999999999999999
Q ss_pred HhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhh
Q 006698 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAY 536 (635)
Q Consensus 457 ~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~ 536 (635)
... |+.+..++|++++++|..+++.|++ +..+||| +|+++++|||++++++||+||+|+++..+.||+||++
T Consensus 398 ~~~-----g~~~~~ihg~~~~~eR~~il~~F~~--G~~~ILV-aTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtG 469 (545)
T PTZ00110 398 RLD-----GWPALCIHGDKKQEERTWVLNEFKT--GKSPIMI-ATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTG 469 (545)
T ss_pred HHc-----CCcEEEEECCCcHHHHHHHHHHHhc--CCCcEEE-EcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccc
Confidence 876 9999999999999999999999998 5677766 7999999999999999999999999999999999999
Q ss_pred hcCCcceEEEEEEEeCC
Q 006698 537 RLGQKRVVHVYHLITSE 553 (635)
Q Consensus 537 R~GQ~~~V~vy~li~~~ 553 (635)
|.|.+- .+|.|++.+
T Consensus 470 R~G~~G--~ai~~~~~~ 484 (545)
T PTZ00110 470 RAGAKG--ASYTFLTPD 484 (545)
T ss_pred cCCCCc--eEEEEECcc
Confidence 999754 446667765
No 32
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.96 E-value=8.9e-28 Score=254.41 Aligned_cols=314 Identities=16% Similarity=0.181 Sum_probs=209.4
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC-----CCCCcEEEeC-c
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH-----PRCRPVIIAP-R 142 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~-----~~~~~LIv~P-~ 142 (635)
+++|+|.+++..+++ ++++|+..++|+|||+.++..+...+... ...++||++| .
T Consensus 23 ~p~~iQ~~ai~~~~~-------------------g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~ 83 (434)
T PRK11192 23 RPTAIQAEAIPPALD-------------------GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTR 83 (434)
T ss_pred CCCHHHHHHHHHHhC-------------------CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcH
Confidence 588999999998864 56899999999999988766555443322 2246799999 6
Q ss_pred cchHHHHHHHHHhcCC--CcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhh
Q 006698 143 SMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV 220 (635)
Q Consensus 143 ~l~~qW~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~ 220 (635)
.|..|+.+.+..+... +++..+.+..... ... . .+..+.+|+|+|++.+....
T Consensus 84 eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~----~~~---~------------------~l~~~~~IlV~Tp~rl~~~~ 138 (434)
T PRK11192 84 ELAMQVADQARELAKHTHLDIATITGGVAYM----NHA---E------------------VFSENQDIVVATPGRLLQYI 138 (434)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEECCCCHH----HHH---H------------------HhcCCCCEEEEChHHHHHHH
Confidence 7889999888887543 3333333311110 000 0 11245789999999887665
Q ss_pred cchhhhhhhccCCCEEEEeCCCcCCCcc--cHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHH
Q 006698 221 SGDELSGILLDLPGLFVFDEGHTPRNDD--TCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297 (635)
Q Consensus 221 ~~~~~~~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~ 297 (635)
... .+....+++||+||||++...+ .........+ .....+++|||+-.....++.. .+
T Consensus 139 ~~~---~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~---~~------------ 200 (434)
T PRK11192 139 KEE---NFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAE---RL------------ 200 (434)
T ss_pred HcC---CcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHH---HH------------
Confidence 432 2334457899999999986533 2222222233 3356799999973211111110 00
Q ss_pred hhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhh
Q 006698 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVK 377 (635)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~ 377 (635)
+...+...... .....+........+
T Consensus 201 ------------------------------------~~~~~~i~~~~-~~~~~~~i~~~~~~~----------------- 226 (434)
T PRK11192 201 ------------------------------------LNDPVEVEAEP-SRRERKKIHQWYYRA----------------- 226 (434)
T ss_pred ------------------------------------ccCCEEEEecC-CcccccCceEEEEEe-----------------
Confidence 00000000000 000000000000000
Q ss_pred hHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHH
Q 006698 378 SFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLR 457 (635)
Q Consensus 378 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~ 457 (635)
.....|...|..++......++||||+....++.+...|.
T Consensus 227 ----------------------------------------~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~ 266 (434)
T PRK11192 227 ----------------------------------------DDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLR 266 (434)
T ss_pred ----------------------------------------CCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHH
Confidence 0112366677777776567899999999999999999999
Q ss_pred hhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhh
Q 006698 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYR 537 (635)
Q Consensus 458 ~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R 537 (635)
.. |+.+..++|+++..+|..+++.|++ |.++||+ +|+++++|||++++++||+||+|+++..|.||+||++|
T Consensus 267 ~~-----~~~~~~l~g~~~~~~R~~~l~~f~~--G~~~vLV-aTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR 338 (434)
T PRK11192 267 KA-----GINCCYLEGEMVQAKRNEAIKRLTD--GRVNVLV-ATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGR 338 (434)
T ss_pred hC-----CCCEEEecCCCCHHHHHHHHHHHhC--CCCcEEE-EccccccCccCCCCCEEEEECCCCCHHHHhhccccccc
Confidence 86 9999999999999999999999997 6678777 69999999999999999999999999999999999999
Q ss_pred cCCcceEEE
Q 006698 538 LGQKRVVHV 546 (635)
Q Consensus 538 ~GQ~~~V~v 546 (635)
.|..-.+.+
T Consensus 339 ~g~~g~ai~ 347 (434)
T PRK11192 339 AGRKGTAIS 347 (434)
T ss_pred CCCCceEEE
Confidence 997654433
No 33
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.96 E-value=9.1e-28 Score=257.60 Aligned_cols=331 Identities=17% Similarity=0.237 Sum_probs=215.6
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh--------CCCCCcEEE
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL--------HPRCRPVII 139 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~--------~~~~~~LIv 139 (635)
..++|+|.+++..++. ++++|+..++|+|||+..+..+...... .....+|||
T Consensus 142 ~~ptpiQ~~aip~il~-------------------g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL 202 (518)
T PLN00206 142 EFPTPIQMQAIPAALS-------------------GRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVL 202 (518)
T ss_pred CCCCHHHHHHHHHHhc-------------------CCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEE
Confidence 3689999999998864 6799999999999998876554433211 123356999
Q ss_pred eC-ccchHHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHH
Q 006698 140 AP-RSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEK 218 (635)
Q Consensus 140 ~P-~~l~~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~ 218 (635)
+| ..|..|+.+++..+...+.+..... ..|....... . ....+.+|+|+|++.+..
T Consensus 203 ~PTreLa~Qi~~~~~~l~~~~~~~~~~~--~gG~~~~~q~---~------------------~l~~~~~IiV~TPgrL~~ 259 (518)
T PLN00206 203 TPTRELCVQVEDQAKVLGKGLPFKTALV--VGGDAMPQQL---Y------------------RIQQGVELIVGTPGRLID 259 (518)
T ss_pred eCCHHHHHHHHHHHHHHhCCCCceEEEE--ECCcchHHHH---H------------------HhcCCCCEEEECHHHHHH
Confidence 99 7788999999888765443221100 0111111100 0 012457899999998876
Q ss_pred hhcchhhhhhhccCCCEEEEeCCCcCCCcc--cHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHH
Q 006698 219 LVSGDELSGILLDLPGLFVFDEGHTPRNDD--TCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTV 296 (635)
Q Consensus 219 ~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~ 296 (635)
.+... .+......+||+||||++...+ .+..+.+..++....+++|||.-. ++-.+...+
T Consensus 260 ~l~~~---~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~~----~v~~l~~~~----------- 321 (518)
T PLN00206 260 LLSKH---DIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVSP----EVEKFASSL----------- 321 (518)
T ss_pred HHHcC---CccchheeEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCCH----HHHHHHHHh-----------
Confidence 65432 2333456899999999986532 334455556677889999999621 111111100
Q ss_pred HhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCC--ceEEEEEeCCcHHHHHHHHHHh
Q 006698 297 RKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPG--LRHSVVILQPDEFQKRLCKAVE 374 (635)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~--~~~~~v~~~~s~~q~~~y~~~~ 374 (635)
+...+...... ...|. .....+.++
T Consensus 322 -------------------------------------~~~~~~i~~~~---~~~~~~~v~q~~~~~~------------- 348 (518)
T PLN00206 322 -------------------------------------AKDIILISIGN---PNRPNKAVKQLAIWVE------------- 348 (518)
T ss_pred -------------------------------------CCCCEEEEeCC---CCCCCcceeEEEEecc-------------
Confidence 00000000000 00010 011111111
Q ss_pred hhhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc--CCCeEEEEcCChhHHHHH
Q 006698 375 GVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLI 452 (635)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l 452 (635)
...|...+.+++... ...++|||++.+..++.+
T Consensus 349 ---------------------------------------------~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l 383 (518)
T PLN00206 349 ---------------------------------------------TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLL 383 (518)
T ss_pred ---------------------------------------------chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHH
Confidence 111333445555433 345899999999999999
Q ss_pred HHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhh
Q 006698 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAI 532 (635)
Q Consensus 453 ~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~ 532 (635)
.+.|... .|+.+..++|+++.++|..+++.|++ |+.+||+ +|+++++|||++.+++||+||+|.++..|.||+
T Consensus 384 ~~~L~~~----~g~~~~~~Hg~~~~~eR~~il~~Fr~--G~~~ILV-aTdvl~rGiDip~v~~VI~~d~P~s~~~yihRi 456 (518)
T PLN00206 384 ANAITVV----TGLKALSIHGEKSMKERREVMKSFLV--GEVPVIV-ATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQI 456 (518)
T ss_pred HHHHhhc----cCcceEEeeCCCCHHHHHHHHHHHHC--CCCCEEE-EecHhhccCCcccCCEEEEeCCCCCHHHHHHhc
Confidence 9999764 28899999999999999999999998 6677777 699999999999999999999999999999999
Q ss_pred hhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhh
Q 006698 533 SRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567 (635)
Q Consensus 533 gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~ 567 (635)
||++|.|+. ..++.|+..+ |..++..+....
T Consensus 457 GRaGR~g~~--G~ai~f~~~~--~~~~~~~l~~~l 487 (518)
T PLN00206 457 GRASRMGEK--GTAIVFVNEE--DRNLFPELVALL 487 (518)
T ss_pred cccccCCCC--eEEEEEEchh--HHHHHHHHHHHH
Confidence 999999964 4455566654 344444444433
No 34
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=7.2e-28 Score=253.81 Aligned_cols=316 Identities=18% Similarity=0.183 Sum_probs=210.5
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC--------CCCCcEEEe
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH--------PRCRPVIIA 140 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~--------~~~~~LIv~ 140 (635)
.+.|.|.+++..++. ++.+++..++|+|||+..+..+...+... ....+||+|
T Consensus 30 ~pt~iQ~~aip~il~-------------------g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~ 90 (423)
T PRK04837 30 NCTPIQALALPLTLA-------------------GRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMA 90 (423)
T ss_pred CCCHHHHHHHHHHhC-------------------CCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEEC
Confidence 578999999988764 67899999999999988765554433221 123579999
Q ss_pred C-ccchHHHHHHHHHhcCC--CcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHH
Q 006698 141 P-RSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFE 217 (635)
Q Consensus 141 P-~~l~~qW~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~ 217 (635)
| ..|..|+.+++..+... +++..+.+.. ...... . .+....+|+|+|++.+.
T Consensus 91 PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~----~~~~~~---~------------------~l~~~~~IlV~TP~~l~ 145 (423)
T PRK04837 91 PTRELAVQIHADAEPLAQATGLKLGLAYGGD----GYDKQL---K------------------VLESGVDILIGTTGRLI 145 (423)
T ss_pred CcHHHHHHHHHHHHHHhccCCceEEEEECCC----CHHHHH---H------------------HhcCCCCEEEECHHHHH
Confidence 9 77889999998887543 3333332211 111000 0 11235689999999887
Q ss_pred HhhcchhhhhhhccCCCEEEEeCCCcCCCcc--cHHHHHHHhcc---cCcEEEEecccCCCChhhHHHHHHhhhhhhhhh
Q 006698 218 KLVSGDELSGILLDLPGLFVFDEGHTPRNDD--TCMFKALSRIK---TRRRIILSGTPFQNNFQELENTLSLVRQEFGEV 292 (635)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~l~---~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~ 292 (635)
...... .+....+.+||+||||++-... ......+..++ ....+++|||+-. .+..+.
T Consensus 146 ~~l~~~---~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~----~~~~~~---------- 208 (423)
T PRK04837 146 DYAKQN---HINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSY----RVRELA---------- 208 (423)
T ss_pred HHHHcC---CcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCH----HHHHHH----------
Confidence 765432 2334567899999999986543 22223333443 2345889999621 110000
Q ss_pred HHHHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhh-cchhhhcccccccccCCCceEEEEEeCCcHHHHHHHH
Q 006698 293 LRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKI-APFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCK 371 (635)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~ 371 (635)
...+ .+......... ...........+
T Consensus 209 --------------------------------------~~~~~~p~~i~v~~~~--~~~~~i~~~~~~------------ 236 (423)
T PRK04837 209 --------------------------------------FEHMNNPEYVEVEPEQ--KTGHRIKEELFY------------ 236 (423)
T ss_pred --------------------------------------HHHCCCCEEEEEcCCC--cCCCceeEEEEe------------
Confidence 0000 00000000000 000000000000
Q ss_pred HHhhhhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHH
Q 006698 372 AVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTL 451 (635)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~ 451 (635)
.....|...|..++......++||||+....++.
T Consensus 237 ----------------------------------------------~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~ 270 (423)
T PRK04837 237 ----------------------------------------------PSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEE 270 (423)
T ss_pred ----------------------------------------------CCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHH
Confidence 0112366667777776667899999999999999
Q ss_pred HHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhh
Q 006698 452 IMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531 (635)
Q Consensus 452 l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa 531 (635)
+.+.|... |+.+..++|+++.++|..+++.|++ ++++||+ +|+++++|||++++++||+||+|+++..|.||
T Consensus 271 l~~~L~~~-----g~~v~~lhg~~~~~~R~~~l~~F~~--g~~~vLV-aTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR 342 (423)
T PRK04837 271 IWGHLAAD-----GHRVGLLTGDVAQKKRLRILEEFTR--GDLDILV-ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHR 342 (423)
T ss_pred HHHHHHhC-----CCcEEEecCCCChhHHHHHHHHHHc--CCCcEEE-EechhhcCCCccccCEEEEeCCCCchhheEec
Confidence 99999886 9999999999999999999999998 6678777 69999999999999999999999999999999
Q ss_pred hhhhhhcCCcceEEEEEEEeCC
Q 006698 532 ISRAYRLGQKRVVHVYHLITSE 553 (635)
Q Consensus 532 ~gR~~R~GQ~~~V~vy~li~~~ 553 (635)
+||++|.|+. -.++.|++++
T Consensus 343 ~GR~gR~G~~--G~ai~~~~~~ 362 (423)
T PRK04837 343 IGRTGRAGAS--GHSISLACEE 362 (423)
T ss_pred cccccCCCCC--eeEEEEeCHH
Confidence 9999999965 3455666653
No 35
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=1.3e-27 Score=254.13 Aligned_cols=310 Identities=16% Similarity=0.121 Sum_probs=206.2
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~ 146 (635)
..++|+|.+++..++. ++.+++..++|+|||+..+..+.. ..+.+|||+| .+|+.
T Consensus 10 ~~~r~~Q~~ai~~~l~-------------------g~dvlv~apTGsGKTl~y~lp~l~-----~~~~~lVi~P~~~L~~ 65 (470)
T TIGR00614 10 SSFRPVQLEVINAVLL-------------------GRDCFVVMPTGGGKSLCYQLPALC-----SDGITLVISPLISLME 65 (470)
T ss_pred CCCCHHHHHHHHHHHc-------------------CCCEEEEcCCCCcHhHHHHHHHHH-----cCCcEEEEecHHHHHH
Confidence 3699999999998864 568999999999999765444321 2456899999 78889
Q ss_pred HHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhh
Q 006698 147 TWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELS 226 (635)
Q Consensus 147 qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~ 226 (635)
||.+.+..... ++..+.+.. ............. ....+++++|++.+.... ....
T Consensus 66 dq~~~l~~~gi--~~~~l~~~~----~~~~~~~i~~~~~-----------------~~~~~il~~TPe~l~~~~--~~~~ 120 (470)
T TIGR00614 66 DQVLQLKASGI--PATFLNSSQ----SKEQQKNVLTDLK-----------------DGKIKLLYVTPEKCSASN--RLLQ 120 (470)
T ss_pred HHHHHHHHcCC--cEEEEeCCC----CHHHHHHHHHHHh-----------------cCCCCEEEECHHHHcCch--hHHH
Confidence 99999887643 333333211 1111111111110 234679999998875422 1222
Q ss_pred hh-hccCCCEEEEeCCCcCCCcccH---HHH----HHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHh
Q 006698 227 GI-LLDLPGLFVFDEGHTPRNDDTC---MFK----ALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK 298 (635)
Q Consensus 227 ~~-~~~~~~~vIvDEaH~~kn~~s~---~~~----~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~ 298 (635)
.+ ....+++|||||||.+...+.. .+. ....++...+++|||||-.....++...+.+-.|...
T Consensus 121 ~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~-------- 192 (470)
T TIGR00614 121 TLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIF-------- 192 (470)
T ss_pred HHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEE--------
Confidence 23 3456899999999998654321 122 2223456779999999854433343332222111110
Q ss_pred hhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhh
Q 006698 299 SGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKS 378 (635)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~ 378 (635)
... -.-|.....+. -
T Consensus 193 -----------------------------------------~~s-----~~r~nl~~~v~-~------------------ 207 (470)
T TIGR00614 193 -----------------------------------------CTS-----FDRPNLYYEVR-R------------------ 207 (470)
T ss_pred -----------------------------------------eCC-----CCCCCcEEEEE-e------------------
Confidence 000 00010000000 0
Q ss_pred HHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHH-hcCCCeEEEEcCChhHHHHHHHHHH
Q 006698 379 FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLE-LSTNEKVLVFSQYIEPLTLIMEQLR 457 (635)
Q Consensus 379 ~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~-~~~~~kviIFs~~~~~~~~l~~~L~ 457 (635)
..+.....+...+. ..++.++||||+.+..++.+...|.
T Consensus 208 ----------------------------------------~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~ 247 (470)
T TIGR00614 208 ----------------------------------------KTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQ 247 (470)
T ss_pred ----------------------------------------CCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHH
Confidence 00012233444444 3367788999999999999999999
Q ss_pred hhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhh
Q 006698 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYR 537 (635)
Q Consensus 458 ~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R 537 (635)
.. |+.+..+||+++.++|..+++.|.+ +.++||+ +|.+.|.|||+++++.||++++|.++..|.|++||++|
T Consensus 248 ~~-----g~~~~~~H~~l~~~eR~~i~~~F~~--g~~~vLV-aT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR 319 (470)
T TIGR00614 248 NL-----GIAAGAYHAGLEISARDDVHHKFQR--DEIQVVV-ATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGR 319 (470)
T ss_pred hc-----CCCeeEeeCCCCHHHHHHHHHHHHc--CCCcEEE-EechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCC
Confidence 87 9999999999999999999999997 6678777 69999999999999999999999999999999999999
Q ss_pred cCCcceEEEE
Q 006698 538 LGQKRVVHVY 547 (635)
Q Consensus 538 ~GQ~~~V~vy 547 (635)
.|+...+.++
T Consensus 320 ~G~~~~~~~~ 329 (470)
T TIGR00614 320 DGLPSECHLF 329 (470)
T ss_pred CCCCceEEEE
Confidence 9987755544
No 36
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=3.1e-27 Score=254.93 Aligned_cols=317 Identities=20% Similarity=0.216 Sum_probs=211.2
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC--------CCCCcEEEe
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH--------PRCRPVIIA 140 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~--------~~~~~LIv~ 140 (635)
.+.|.|.+++..++. ++.+|+..++|+|||+..+..+...+... ...++||||
T Consensus 31 ~ptpiQ~~~ip~~l~-------------------G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~ 91 (572)
T PRK04537 31 RCTPIQALTLPVALP-------------------GGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILA 91 (572)
T ss_pred CCCHHHHHHHHHHhC-------------------CCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEe
Confidence 589999999998864 67899999999999988776554433221 124679999
Q ss_pred C-ccchHHHHHHHHHhcCCCc--ccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHH
Q 006698 141 P-RSMLLTWEEEFKKWGIDIP--FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFE 217 (635)
Q Consensus 141 P-~~l~~qW~~E~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~ 217 (635)
| ..|..|+.+++.++..... +..+.+.. ...... . ......+|+|+|++.+.
T Consensus 92 PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~----~~~~q~---~------------------~l~~~~dIiV~TP~rL~ 146 (572)
T PRK04537 92 PTRELAIQIHKDAVKFGADLGLRFALVYGGV----DYDKQR---E------------------LLQQGVDVIIATPGRLI 146 (572)
T ss_pred CcHHHHHHHHHHHHHHhccCCceEEEEECCC----CHHHHH---H------------------HHhCCCCEEEECHHHHH
Confidence 9 7888999999998865432 33333211 110000 0 01235689999999887
Q ss_pred HhhcchhhhhhhccCCCEEEEeCCCcCCCcc--cHHHHHHHhcc---cCcEEEEecccCCCChhhHHHHHHhhhhhhhhh
Q 006698 218 KLVSGDELSGILLDLPGLFVFDEGHTPRNDD--TCMFKALSRIK---TRRRIILSGTPFQNNFQELENTLSLVRQEFGEV 292 (635)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~l~---~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~ 292 (635)
..+.... .+.....++|||||||.+-... ......+..++ ....+++|||.-. ++..+...
T Consensus 147 ~~l~~~~--~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~----~v~~l~~~-------- 212 (572)
T PRK04537 147 DYVKQHK--VVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSH----RVLELAYE-------- 212 (572)
T ss_pred HHHHhcc--ccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccH----HHHHHHHH--------
Confidence 6553311 1223346889999999875432 22223334443 4568999999621 11111000
Q ss_pred HHHHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHH
Q 006698 293 LRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKA 372 (635)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~ 372 (635)
+. -.+......... ..+......+.+
T Consensus 213 ------~l---------------------------------~~p~~i~v~~~~---~~~~~i~q~~~~------------ 238 (572)
T PRK04537 213 ------HM---------------------------------NEPEKLVVETET---ITAARVRQRIYF------------ 238 (572)
T ss_pred ------Hh---------------------------------cCCcEEEecccc---ccccceeEEEEe------------
Confidence 00 000000000000 000000111110
Q ss_pred HhhhhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHH
Q 006698 373 VEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLI 452 (635)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l 452 (635)
.....|...+..++....+.++||||+....++.|
T Consensus 239 ---------------------------------------------~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l 273 (572)
T PRK04537 239 ---------------------------------------------PADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERV 273 (572)
T ss_pred ---------------------------------------------cCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHH
Confidence 00123556667777766788999999999999999
Q ss_pred HHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhh
Q 006698 453 MEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAI 532 (635)
Q Consensus 453 ~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~ 532 (635)
.+.|... |+.+..++|+++..+|..+++.|++ ++++||| +|+++++|||+.++++||+||+|+++..|.||+
T Consensus 274 ~~~L~~~-----g~~v~~lhg~l~~~eR~~il~~Fr~--G~~~VLV-aTdv~arGIDip~V~~VInyd~P~s~~~yvqRi 345 (572)
T PRK04537 274 ARTLERH-----GYRVGVLSGDVPQKKRESLLNRFQK--GQLEILV-ATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRI 345 (572)
T ss_pred HHHHHHc-----CCCEEEEeCCCCHHHHHHHHHHHHc--CCCeEEE-EehhhhcCCCccCCCEEEEcCCCCCHHHHhhhh
Confidence 9999887 9999999999999999999999997 6677777 699999999999999999999999999999999
Q ss_pred hhhhhcCCcceEEEEEEEeC
Q 006698 533 SRAYRLGQKRVVHVYHLITS 552 (635)
Q Consensus 533 gR~~R~GQ~~~V~vy~li~~ 552 (635)
||++|.|..- ..+.|++.
T Consensus 346 GRaGR~G~~G--~ai~~~~~ 363 (572)
T PRK04537 346 GRTARLGEEG--DAISFACE 363 (572)
T ss_pred cccccCCCCc--eEEEEecH
Confidence 9999999754 33455554
No 37
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.96 E-value=1.1e-26 Score=252.02 Aligned_cols=326 Identities=16% Similarity=0.181 Sum_probs=214.9
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh-CCCCCcEEEeC-ccchH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~-~~~~~~LIv~P-~~l~~ 146 (635)
++.|+|.+++..++. ++.+|+..++|+|||++.+..+...+.. .....+||+|| ..|..
T Consensus 28 ~ptpiQ~~ai~~ll~-------------------g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~ 88 (629)
T PRK11634 28 KPSPIQAECIPHLLN-------------------GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAV 88 (629)
T ss_pred CCCHHHHHHHHHHHc-------------------CCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHH
Confidence 589999999998864 5689999999999998765444333332 23345799999 77889
Q ss_pred HHHHHHHHhc---CCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcch
Q 006698 147 TWEEEFKKWG---IDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD 223 (635)
Q Consensus 147 qW~~E~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~ 223 (635)
||.+++.++. +++.+..+.+.. ..... .. ......+|+|+|++.+...+...
T Consensus 89 Qv~~~l~~~~~~~~~i~v~~~~gG~----~~~~q---~~------------------~l~~~~~IVVgTPgrl~d~l~r~ 143 (629)
T PRK11634 89 QVAEAMTDFSKHMRGVNVVALYGGQ----RYDVQ---LR------------------ALRQGPQIVVGTPGRLLDHLKRG 143 (629)
T ss_pred HHHHHHHHHHhhcCCceEEEEECCc----CHHHH---HH------------------HhcCCCCEEEECHHHHHHHHHcC
Confidence 9999988774 344444333211 11110 00 11245789999999887655331
Q ss_pred hhhhhhccCCCEEEEeCCCcCCCcc--cHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhh
Q 006698 224 ELSGILLDLPGLFVFDEGHTPRNDD--TCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300 (635)
Q Consensus 224 ~~~~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~ 300 (635)
.+......+||+||||.+-+.. ......+..+ .....+++|||+- ..+..+.. .|.
T Consensus 144 ---~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p----~~i~~i~~--------------~~l 202 (629)
T PRK11634 144 ---TLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMP----EAIRRITR--------------RFM 202 (629)
T ss_pred ---CcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCC----hhHHHHHH--------------HHc
Confidence 2223456889999999875543 2344445555 3456799999961 11110000 000
Q ss_pred hhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHH
Q 006698 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFV 380 (635)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~ 380 (635)
. .+...... .. ....|......+.+
T Consensus 203 ~---------------------------------~~~~i~i~-~~-~~~~~~i~q~~~~v-------------------- 227 (629)
T PRK11634 203 K---------------------------------EPQEVRIQ-SS-VTTRPDISQSYWTV-------------------- 227 (629)
T ss_pred C---------------------------------CCeEEEcc-Cc-cccCCceEEEEEEe--------------------
Confidence 0 00000000 00 00011111111100
Q ss_pred HHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhh
Q 006698 381 ELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460 (635)
Q Consensus 381 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~ 460 (635)
....|...|..++......++||||+....++.+.+.|...
T Consensus 228 --------------------------------------~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~- 268 (629)
T PRK11634 228 --------------------------------------WGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN- 268 (629)
T ss_pred --------------------------------------chhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhC-
Confidence 11236667777777666779999999999999999999987
Q ss_pred cccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCC
Q 006698 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQ 540 (635)
Q Consensus 461 ~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ 540 (635)
|+.+..++|.+++.+|..+++.|++ ++++||| +|++++.|||++.+++||+||+|.++..|.||+||++|.|.
T Consensus 269 ----g~~~~~lhgd~~q~~R~~il~~Fr~--G~~~ILV-ATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr 341 (629)
T PRK11634 269 ----GYNSAALNGDMNQALREQTLERLKD--GRLDILI-ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGR 341 (629)
T ss_pred ----CCCEEEeeCCCCHHHHHHHHHHHhC--CCCCEEE-EcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCC
Confidence 9999999999999999999999998 5677776 79999999999999999999999999999999999999996
Q ss_pred cceEEEEEEEeCCChHHHHHHHHH
Q 006698 541 KRVVHVYHLITSETLEWDKLRRQA 564 (635)
Q Consensus 541 ~~~V~vy~li~~~tiEe~i~~~~~ 564 (635)
.-. .+.|+.. -|...++.++
T Consensus 342 ~G~--ai~~v~~--~e~~~l~~ie 361 (629)
T PRK11634 342 AGR--ALLFVEN--RERRLLRNIE 361 (629)
T ss_pred cce--EEEEech--HHHHHHHHHH
Confidence 543 3334432 2444444443
No 38
>PTZ00424 helicase 45; Provisional
Probab=99.95 E-value=6.6e-27 Score=246.10 Aligned_cols=321 Identities=19% Similarity=0.245 Sum_probs=210.0
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh-CCCCCcEEEeC-ccchH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~-~~~~~~LIv~P-~~l~~ 146 (635)
.+.|+|.+++..+++ +.++++..++|+|||+.++..+...... ....++||++| ..|..
T Consensus 50 ~~~~~Q~~ai~~i~~-------------------~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~ 110 (401)
T PTZ00424 50 KPSAIQQRGIKPILD-------------------GYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQ 110 (401)
T ss_pred CCCHHHHHHHHHHhC-------------------CCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHH
Confidence 689999999998864 5688999999999998876555444432 23456899999 77888
Q ss_pred HHHHHHHHhcCCCcccccCCCCCcCcc-cchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhh
Q 006698 147 TWEEEFKKWGIDIPFYNLNKPELSGKE-NNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225 (635)
Q Consensus 147 qW~~E~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~ 225 (635)
|+.+.+..+.....+.... ..+.. .... .. .+....+|+|+|++.+.......
T Consensus 111 Q~~~~~~~~~~~~~~~~~~---~~g~~~~~~~---~~------------------~~~~~~~Ivv~Tp~~l~~~l~~~-- 164 (401)
T PTZ00424 111 QIQKVVLALGDYLKVRCHA---CVGGTVVRDD---IN------------------KLKAGVHMVVGTPGRVYDMIDKR-- 164 (401)
T ss_pred HHHHHHHHHhhhcCceEEE---EECCcCHHHH---HH------------------HHcCCCCEEEECcHHHHHHHHhC--
Confidence 8888888775432221110 01111 0000 00 11234689999998876554321
Q ss_pred hhhhccCCCEEEEeCCCcCCCcc--cHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhh
Q 006698 226 SGILLDLPGLFVFDEGHTPRNDD--TCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302 (635)
Q Consensus 226 ~~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~ 302 (635)
.+....+++||+||||++.... ......+..+ ...+.+++|||+-. ++..+.. .|..
T Consensus 165 -~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~----~~~~~~~--------------~~~~- 224 (401)
T PTZ00424 165 -HLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPN----EILELTT--------------KFMR- 224 (401)
T ss_pred -CcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCH----HHHHHHH--------------HHcC-
Confidence 2334567999999999975432 3344555555 44578999999721 1111000 0000
Q ss_pred hhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHHHH
Q 006698 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVEL 382 (635)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~~~ 382 (635)
.+.......... .+.......+.++.
T Consensus 225 --------------------------------~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------------- 250 (401)
T PTZ00424 225 --------------------------------DPKRILVKKDEL--TLEGIRQFYVAVEK-------------------- 250 (401)
T ss_pred --------------------------------CCEEEEeCCCCc--ccCCceEEEEecCh--------------------
Confidence 000000000000 01111111111110
Q ss_pred HHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcc
Q 006698 383 NYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNW 462 (635)
Q Consensus 383 ~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~ 462 (635)
...+...+..++......++||||+....++.+.+.|...
T Consensus 251 -------------------------------------~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~--- 290 (401)
T PTZ00424 251 -------------------------------------EEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHER--- 290 (401)
T ss_pred -------------------------------------HHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHC---
Confidence 0113334445555446678999999999999999999886
Q ss_pred cCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcc
Q 006698 463 REGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKR 542 (635)
Q Consensus 463 ~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~ 542 (635)
++.+..++|+++.++|..+++.|++ |.++||+ +|+++++|+|++.++.||++|+|.++..+.|++||++|.|.
T Consensus 291 --~~~~~~~h~~~~~~~R~~i~~~f~~--g~~~vLv-aT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~-- 363 (401)
T PTZ00424 291 --DFTVSCMHGDMDQKDRDLIMREFRS--GSTRVLI-TTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGR-- 363 (401)
T ss_pred --CCcEEEEeCCCCHHHHHHHHHHHHc--CCCCEEE-EcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCC--
Confidence 8999999999999999999999997 6677776 69999999999999999999999999999999999999985
Q ss_pred eEEEEEEEeCCCh
Q 006698 543 VVHVYHLITSETL 555 (635)
Q Consensus 543 ~V~vy~li~~~ti 555 (635)
...++.|++.+..
T Consensus 364 ~G~~i~l~~~~~~ 376 (401)
T PTZ00424 364 KGVAINFVTPDDI 376 (401)
T ss_pred CceEEEEEcHHHH
Confidence 3556667765533
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.95 E-value=1.9e-26 Score=251.61 Aligned_cols=304 Identities=18% Similarity=0.181 Sum_probs=204.2
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLT 147 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~q 147 (635)
.++|+|.+++..++. ++.+++..+||+|||+.....+. .. .+.+|||+| .+|..+
T Consensus 25 ~~r~~Q~~ai~~il~-------------------g~dvlv~apTGsGKTl~y~lpal--~~---~g~tlVisPl~sL~~d 80 (607)
T PRK11057 25 QFRPGQQEIIDAVLS-------------------GRDCLVVMPTGGGKSLCYQIPAL--VL---DGLTLVVSPLISLMKD 80 (607)
T ss_pred CCCHHHHHHHHHHHc-------------------CCCEEEEcCCCchHHHHHHHHHH--Hc---CCCEEEEecHHHHHHH
Confidence 699999999998754 67899999999999987654432 21 346899999 788899
Q ss_pred HHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhh
Q 006698 148 WEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG 227 (635)
Q Consensus 148 W~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~ 227 (635)
|.+.+...+ +....+++.. ........+.... ....+++++|++.+... .....
T Consensus 81 qv~~l~~~g--i~~~~~~s~~----~~~~~~~~~~~~~-----------------~g~~~il~~tPe~l~~~---~~~~~ 134 (607)
T PRK11057 81 QVDQLLANG--VAAACLNSTQ----TREQQLEVMAGCR-----------------TGQIKLLYIAPERLMMD---NFLEH 134 (607)
T ss_pred HHHHHHHcC--CcEEEEcCCC----CHHHHHHHHHHHh-----------------CCCCcEEEEChHHhcCh---HHHHH
Confidence 999988763 2233332211 1111111111111 12456888888876532 23333
Q ss_pred hhccCCCEEEEeCCCcCCCccc---HHHHHHH----hcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhh
Q 006698 228 ILLDLPGLFVFDEGHTPRNDDT---CMFKALS----RIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300 (635)
Q Consensus 228 ~~~~~~~~vIvDEaH~~kn~~s---~~~~~l~----~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~ 300 (635)
+....+++|||||||.+-..+. ..++.+. .++...+++||||+-.....++...+.+-+|...
T Consensus 135 l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~---------- 204 (607)
T PRK11057 135 LAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ---------- 204 (607)
T ss_pred HhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEE----------
Confidence 4445689999999999865431 1222332 2356678999999854444444333222111100
Q ss_pred hhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHH
Q 006698 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFV 380 (635)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~ 380 (635)
... . .-|.....++
T Consensus 205 ---------------------------------------~~~---~--~r~nl~~~v~---------------------- 218 (607)
T PRK11057 205 ---------------------------------------ISS---F--DRPNIRYTLV---------------------- 218 (607)
T ss_pred ---------------------------------------ECC---C--CCCcceeeee----------------------
Confidence 000 0 0000000000
Q ss_pred HHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhh
Q 006698 381 ELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460 (635)
Q Consensus 381 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~ 460 (635)
....+...+...+....+.++||||+.+..++.+...|...
T Consensus 219 --------------------------------------~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~- 259 (607)
T PRK11057 219 --------------------------------------EKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSR- 259 (607)
T ss_pred --------------------------------------eccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC-
Confidence 00112333445555557889999999999999999999987
Q ss_pred cccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCC
Q 006698 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQ 540 (635)
Q Consensus 461 ~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ 540 (635)
|+.+..+||+++.++|..+++.|.+ +.++||+ +|.+.|.|||+++++.||+||+|.++..+.|++||++|.|.
T Consensus 260 ----g~~v~~~Ha~l~~~~R~~i~~~F~~--g~~~VLV-aT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~ 332 (607)
T PRK11057 260 ----GISAAAYHAGLDNDVRADVQEAFQR--DDLQIVV-ATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGL 332 (607)
T ss_pred ----CCCEEEecCCCCHHHHHHHHHHHHC--CCCCEEE-EechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCC
Confidence 9999999999999999999999997 5677777 69999999999999999999999999999999999999997
Q ss_pred cceE
Q 006698 541 KRVV 544 (635)
Q Consensus 541 ~~~V 544 (635)
...+
T Consensus 333 ~~~~ 336 (607)
T PRK11057 333 PAEA 336 (607)
T ss_pred CceE
Confidence 6543
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.95 E-value=4.1e-26 Score=249.98 Aligned_cols=305 Identities=20% Similarity=0.175 Sum_probs=206.6
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLT 147 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~q 147 (635)
+++|+|.+++..++. +++++++.++|+|||+.+...+. . ..+.++||+| .+|+.+
T Consensus 13 ~fr~~Q~~~i~~il~-------------------g~dvlv~~PTG~GKTl~y~lpal--~---~~g~~lVisPl~sL~~d 68 (591)
T TIGR01389 13 DFRPGQEEIISHVLD-------------------GRDVLVVMPTGGGKSLCYQVPAL--L---LKGLTVVISPLISLMKD 68 (591)
T ss_pred CCCHHHHHHHHHHHc-------------------CCCEEEEcCCCccHhHHHHHHHH--H---cCCcEEEEcCCHHHHHH
Confidence 599999999998864 56899999999999988764442 2 2346799999 888899
Q ss_pred HHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhh
Q 006698 148 WEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG 227 (635)
Q Consensus 148 W~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~ 227 (635)
+.+.+...+ +++..+++.... .+. ........ ....+++++|++.+.... ....
T Consensus 69 q~~~l~~~g--i~~~~~~s~~~~-~~~---~~~~~~l~-----------------~~~~~il~~tpe~l~~~~---~~~~ 122 (591)
T TIGR01389 69 QVDQLRAAG--VAAAYLNSTLSA-KEQ---QDIEKALV-----------------NGELKLLYVAPERLEQDY---FLNM 122 (591)
T ss_pred HHHHHHHcC--CcEEEEeCCCCH-HHH---HHHHHHHh-----------------CCCCCEEEEChhHhcChH---HHHH
Confidence 999988764 334333332111 111 11111110 135678889998765321 2223
Q ss_pred hhccCCCEEEEeCCCcCCCccc-------HHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhh
Q 006698 228 ILLDLPGLFVFDEGHTPRNDDT-------CMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300 (635)
Q Consensus 228 ~~~~~~~~vIvDEaH~~kn~~s-------~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~ 300 (635)
+.....++|||||||.+...+. +.......++...+++||||+-.....++...+.+-.|..
T Consensus 123 l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~----------- 191 (591)
T TIGR01389 123 LQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANE----------- 191 (591)
T ss_pred HhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCe-----------
Confidence 3345689999999999864332 2222233344556999999985444433333221111100
Q ss_pred hhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHH
Q 006698 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFV 380 (635)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~ 380 (635)
... . ..-|.....++
T Consensus 192 --------------------------------------~~~---~--~~r~nl~~~v~---------------------- 206 (591)
T TIGR01389 192 --------------------------------------FIT---S--FDRPNLRFSVV---------------------- 206 (591)
T ss_pred --------------------------------------Eec---C--CCCCCcEEEEE----------------------
Confidence 000 0 00011000000
Q ss_pred HHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhh
Q 006698 381 ELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460 (635)
Q Consensus 381 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~ 460 (635)
....+...+.+.+....+.+.||||+.+..++.+.+.|...
T Consensus 207 --------------------------------------~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~- 247 (591)
T TIGR01389 207 --------------------------------------KKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQ- 247 (591)
T ss_pred --------------------------------------eCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC-
Confidence 00123444556666556789999999999999999999886
Q ss_pred cccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCC
Q 006698 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQ 540 (635)
Q Consensus 461 ~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ 540 (635)
|+.+..+||+++.++|..+++.|.. +.++|++ +|.+.|.|||+++++.||+|++|.|+..+.|++||++|.|+
T Consensus 248 ----g~~~~~~H~~l~~~~R~~i~~~F~~--g~~~vlV-aT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~ 320 (591)
T TIGR01389 248 ----GISALAYHAGLSNKVRAENQEDFLY--DDVKVMV-ATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGL 320 (591)
T ss_pred ----CCCEEEEECCCCHHHHHHHHHHHHc--CCCcEEE-EechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCC
Confidence 9999999999999999999999997 5577766 69999999999999999999999999999999999999997
Q ss_pred cceEE
Q 006698 541 KRVVH 545 (635)
Q Consensus 541 ~~~V~ 545 (635)
...+.
T Consensus 321 ~~~~i 325 (591)
T TIGR01389 321 PAEAI 325 (591)
T ss_pred CceEE
Confidence 66544
No 41
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=5.8e-26 Score=257.74 Aligned_cols=369 Identities=17% Similarity=0.211 Sum_probs=211.8
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~ 146 (635)
..|||||.+||..+.+.+..| .++++|.+++|+|||++|++++..+++....+++||||| ..|+.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g--------------~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~ 477 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEG--------------QREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGE 477 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhc--------------cCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHH
Confidence 469999999999988776532 568999999999999999999988887777789999999 88999
Q ss_pred HHHHHHHHhcCCCc--ccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcch-
Q 006698 147 TWEEEFKKWGIDIP--FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD- 223 (635)
Q Consensus 147 qW~~E~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~- 223 (635)
||.++|..+.+... +....+. .+ +... .......|+++|+.++.+.....
T Consensus 478 Qa~~~F~~~~~~~~~~~~~i~~i--~~---------L~~~----------------~~~~~~~I~iaTiQtl~~~~~~~~ 530 (1123)
T PRK11448 478 QAEDAFKDTKIEGDQTFASIYDI--KG---------LEDK----------------FPEDETKVHVATVQGMVKRILYSD 530 (1123)
T ss_pred HHHHHHHhcccccccchhhhhch--hh---------hhhh----------------cccCCCCEEEEEHHHHHHhhhccc
Confidence 99999998743211 1000000 00 0000 00235689999999886653221
Q ss_pred -hhhhhhccCCCEEEEeCCCcCCCcc----------------cHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhh
Q 006698 224 -ELSGILLDLPGLFVFDEGHTPRNDD----------------TCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVR 286 (635)
Q Consensus 224 -~~~~~~~~~~~~vIvDEaH~~kn~~----------------s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~ 286 (635)
....+....||+||+||||+..... ...++.+.......+++|||||..+. .++|. .
T Consensus 531 ~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFdA~~IGLTATP~r~t-~~~FG-----~ 604 (1123)
T PRK11448 531 DPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFDAVKIGLTATPALHT-TEIFG-----E 604 (1123)
T ss_pred cccccCCCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcCccEEEEecCCccch-hHHhC-----C
Confidence 1111334568999999999953110 12334443333458899999997432 11111 0
Q ss_pred hhhhhhHHHHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhc-chhhhcccccccccCCCceEEEEE----eC
Q 006698 287 QEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIA-PFVNVHKGTVLQESLPGLRHSVVI----LQ 361 (635)
Q Consensus 287 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~rr~~~~~~~~lp~~~~~~v~----~~ 361 (635)
|-+- |. +.+.+. .+... .-|+....... +.
T Consensus 605 pv~~--------Ys-----------------------------l~eAI~DG~Lv~--------~~~p~~i~t~~~~~gi~ 639 (1123)
T PRK11448 605 PVYT--------YS-----------------------------YREAVIDGYLID--------HEPPIRIETRLSQEGIH 639 (1123)
T ss_pred eeEE--------ee-----------------------------HHHHHhcCCccc--------CcCCEEEEEEecccccc
Confidence 1000 00 000000 00000 00111111000 00
Q ss_pred Cc-HHHHHHHHHHhhhhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCc-cccchHHHHHHHHHhcCCCeE
Q 006698 362 PD-EFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDP-EAGIKTRFLLILLELSTNEKV 439 (635)
Q Consensus 362 ~s-~~q~~~y~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~-~~s~K~~~l~~~l~~~~~~kv 439 (635)
.+ ..+...|+....... ....|. ........+......+ ....-...+.+.+....+.|.
T Consensus 640 ~~~~e~~~~~~~~~~~i~----------~~~l~d--------~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~Kt 701 (1123)
T PRK11448 640 FEKGEEVEVINTQTGEID----------LATLED--------EVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKT 701 (1123)
T ss_pred ccccchhhhcchhhhhhh----------hccCcH--------HHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcE
Confidence 00 001111111000000 000000 0000000000000000 000001122233332345799
Q ss_pred EEEcCChhHHHHHHHHHHhhhc----ccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCe
Q 006698 440 LVFSQYIEPLTLIMEQLRHRFN----WREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515 (635)
Q Consensus 440 iIFs~~~~~~~~l~~~L~~~~~----~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~ 515 (635)
||||.....++.+.+.|.+.|. ...+..+..++|+++ ++.+++++|++ +....++++++.+++|+|++.++.
T Consensus 702 iIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~--~~~p~IlVsvdmL~TG~DvP~v~~ 777 (1123)
T PRK11448 702 LIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKN--ERLPNIVVTVDLLTTGIDVPSICN 777 (1123)
T ss_pred EEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhC--CCCCeEEEEecccccCCCcccccE
Confidence 9999999999999988877652 122335677999975 57789999987 333345568999999999999999
Q ss_pred EEEeCCCCChhhHHhhhhhhhhcCC---cceEEEEEEE
Q 006698 516 VVLLDVVWNPFVERQAISRAYRLGQ---KRVVHVYHLI 550 (635)
Q Consensus 516 vi~~d~~wnp~~~~Qa~gR~~R~GQ---~~~V~vy~li 550 (635)
||++.|+-++..+.|++||+.|.-- +....||-++
T Consensus 778 vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 778 LVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred EEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 9999999999999999999999854 4467777764
No 42
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=1.2e-26 Score=227.18 Aligned_cols=341 Identities=18% Similarity=0.250 Sum_probs=228.3
Q ss_pred HhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccch
Q 006698 67 RKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSML 145 (635)
Q Consensus 67 ~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~ 145 (635)
.+.+||||...+..|.-+ ...+.||+.-++|.|||++.+..+... .+++||+|. ..-+
T Consensus 300 st~iRpYQEksL~KMFGN----------------gRARSGiIVLPCGAGKtLVGvTAa~ti-----kK~clvLcts~VSV 358 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGN----------------GRARSGIIVLPCGAGKTLVGVTAACTI-----KKSCLVLCTSAVSV 358 (776)
T ss_pred ccccCchHHHHHHHHhCC----------------CcccCceEEEecCCCCceeeeeeeeee-----cccEEEEecCccCH
Confidence 357999999999998533 235678999999999999888776443 567899999 5567
Q ss_pred HHHHHHHHHhcC--CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcc-
Q 006698 146 LTWEEEFKKWGI--DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG- 222 (635)
Q Consensus 146 ~qW~~E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~- 222 (635)
.||+.+|..|.. +-.+..+.+ ...+ ....+.+|+|+||+++..-...
T Consensus 359 eQWkqQfk~wsti~d~~i~rFTs-----d~Ke-------------------------~~~~~~gvvvsTYsMva~t~kRS 408 (776)
T KOG1123|consen 359 EQWKQQFKQWSTIQDDQICRFTS-----DAKE-------------------------RFPSGAGVVVTTYSMVAYTGKRS 408 (776)
T ss_pred HHHHHHHHhhcccCccceEEeec-----cccc-------------------------cCCCCCcEEEEeeehhhhccccc
Confidence 999999999942 111111111 0000 1135788999999987643332
Q ss_pred ---h-hhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhc-ccCcEEEEecccCCC--ChhhHHHHHHhhhhhhhhhHHH
Q 006698 223 ---D-ELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRI-KTRRRIILSGTPFQN--NFQELENTLSLVRQEFGEVLRT 295 (635)
Q Consensus 223 ---~-~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l-~~~~~l~LTgTP~~n--~~~el~~ll~~l~p~~~~~~~~ 295 (635)
+ -..-+....|+++|+||.|-+- +..++.+..+ .+...++||||.+.. .+.||- -++.|++...
T Consensus 409 ~eaek~m~~l~~~EWGllllDEVHvvP---A~MFRRVlsiv~aHcKLGLTATLvREDdKI~DLN---FLIGPKlYEA--- 479 (776)
T KOG1123|consen 409 HEAEKIMDFLRGREWGLLLLDEVHVVP---AKMFRRVLSIVQAHCKLGLTATLVREDDKITDLN---FLIGPKLYEA--- 479 (776)
T ss_pred HHHHHHHHHHhcCeeeeEEeehhccch---HHHHHHHHHHHHHHhhccceeEEeeccccccccc---eeecchhhhc---
Confidence 1 1222334569999999999872 3445444444 788899999998753 344431 2234443211
Q ss_pred HHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhh
Q 006698 296 VRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEG 375 (635)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~ 375 (635)
+..+|.+ + ..+...+-.-|+|+||++-.+-|-....
T Consensus 480 ------------------------------nWmdL~~----------k----GhIA~VqCaEVWCpMt~eFy~eYL~~~t 515 (776)
T KOG1123|consen 480 ------------------------------NWMDLQK----------K----GHIAKVQCAEVWCPMTPEFYREYLRENT 515 (776)
T ss_pred ------------------------------cHHHHHh----------C----CceeEEeeeeeecCCCHHHHHHHHhhhh
Confidence 1111111 0 1233345566899999876555443211
Q ss_pred hhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHH
Q 006698 376 VKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIM 453 (635)
Q Consensus 376 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~ 453 (635)
.. + .....-...|.++..-++..+ .|.|+|||+..+-.+...+
T Consensus 516 ~k---------r--------------------------~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YA 560 (776)
T KOG1123|consen 516 RK---------R--------------------------MLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYA 560 (776)
T ss_pred hh---------h--------------------------heeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHH
Confidence 11 0 001111245777766666655 8999999999876665554
Q ss_pred HHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCC-ChhhHHhhh
Q 006698 454 EQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVW-NPFVERQAI 532 (635)
Q Consensus 454 ~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~w-np~~~~Qa~ 532 (635)
-.| |.+ +|.|.+++.+|-++++.|+. ++.++-+.+ +++|...+||+.|+.+|-...+. +-..+.||.
T Consensus 561 ikl--------~Kp--fIYG~Tsq~ERm~ILqnFq~-n~~vNTIFl-SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRL 628 (776)
T KOG1123|consen 561 IKL--------GKP--FIYGPTSQNERMKILQNFQT-NPKVNTIFL-SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRL 628 (776)
T ss_pred HHc--------CCc--eEECCCchhHHHHHHHhccc-CCccceEEE-eeccCccccCCcccEEEEEcccccchHHHHHHH
Confidence 444 333 48899999999999999996 355665555 89999999999999999988876 556789999
Q ss_pred hhhhhcCCc----ceEEEEEEEeCCChHHH
Q 006698 533 SRAYRLGQK----RVVHVYHLITSETLEWD 558 (635)
Q Consensus 533 gR~~R~GQ~----~~V~vy~li~~~tiEe~ 558 (635)
||+.|.-.. -.++.|.|+..+|.|-.
T Consensus 629 GRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 629 GRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred HHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 999996422 27899999999998743
No 43
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=4e-26 Score=217.52 Aligned_cols=330 Identities=20% Similarity=0.221 Sum_probs=225.7
Q ss_pred HhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHH-HHHHHHhCCCCCcEEEeC-ccc
Q 006698 67 RKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVF-LQAYMKLHPRCRPVIIAP-RSM 144 (635)
Q Consensus 67 ~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~-i~~~~~~~~~~~~LIv~P-~~l 144 (635)
.+.+-+-|.+++-.++. ++.||.+.++|+|||..-+.- +..+++.-..-.+||++| .-|
T Consensus 81 ~~~PT~IQ~~aiP~~L~-------------------g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtREL 141 (476)
T KOG0330|consen 81 WKKPTKIQSEAIPVALG-------------------GRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTREL 141 (476)
T ss_pred cCCCchhhhhhcchhhC-------------------CCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHH
Confidence 34677889999887754 789999999999999665443 334444322334599999 566
Q ss_pred hHHHHHHHHHhcCC--CcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcc
Q 006698 145 LLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222 (635)
Q Consensus 145 ~~qW~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~ 222 (635)
-.|-...++.++.+ +.+.++-|.. ..... .. +.....+|+|.|+..+..++.+
T Consensus 142 A~QI~e~fe~Lg~~iglr~~~lvGG~-----~m~~q--~~------------------~L~kkPhilVaTPGrL~dhl~~ 196 (476)
T KOG0330|consen 142 AQQIAEQFEALGSGIGLRVAVLVGGM-----DMMLQ--AN------------------QLSKKPHILVATPGRLWDHLEN 196 (476)
T ss_pred HHHHHHHHHHhccccCeEEEEEecCc-----hHHHH--HH------------------HhhcCCCEEEeCcHHHHHHHHh
Confidence 67777778887543 4444443311 11110 00 1135678999999999887743
Q ss_pred hhhhhhhccCCCEEEEeCCCcCCCcc--cHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhh
Q 006698 223 DELSGILLDLPGLFVFDEGHTPRNDD--TCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS 299 (635)
Q Consensus 223 ~~~~~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~ 299 (635)
.+.+-.....++|+|||.++-|.. ..+-+.++.+ ..+..++.|||.- .+..
T Consensus 197 --Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt-~kv~----------------------- 250 (476)
T KOG0330|consen 197 --TKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSATMT-KKVR----------------------- 250 (476)
T ss_pred --ccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecc-hhhH-----------------------
Confidence 233333445789999999998853 4556667777 4455688899951 1111
Q ss_pred hhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhH
Q 006698 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSF 379 (635)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~ 379 (635)
.|.. ..+ .-|. ...+ +. .|..+.
T Consensus 251 -----------------------------kL~r----asl---------~~p~--~v~~----s~----ky~tv~----- 273 (476)
T KOG0330|consen 251 -----------------------------KLQR----ASL---------DNPV--KVAV----SS----KYQTVD----- 273 (476)
T ss_pred -----------------------------HHHh----hcc---------CCCe--EEec----cc----hhcchH-----
Confidence 1110 000 0010 0000 00 000000
Q ss_pred HHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhh
Q 006698 380 VELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR 459 (635)
Q Consensus 380 ~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~ 459 (635)
.+.+...-....-|...|..+|++..|..+||||+...+.+.+.-.|...
T Consensus 274 ------------------------------~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~l 323 (476)
T KOG0330|consen 274 ------------------------------HLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNL 323 (476)
T ss_pred ------------------------------HhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhc
Confidence 00000000112336677888999888999999999999999999999987
Q ss_pred hcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcC
Q 006698 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLG 539 (635)
Q Consensus 460 ~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~G 539 (635)
|+....++|.|++..|...++.|++ +.+.||+ +|++++.|||.+.++.||+||.|-+...|++|.||+.|.|
T Consensus 324 -----g~~a~~LhGqmsq~~Rlg~l~~Fk~--~~r~iLv-~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG 395 (476)
T KOG0330|consen 324 -----GFQAIPLHGQMSQSKRLGALNKFKA--GARSILV-CTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG 395 (476)
T ss_pred -----CcceecccchhhHHHHHHHHHHHhc--cCCcEEE-ecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC
Confidence 9999999999999999999999998 5566666 7999999999999999999999999999999999999999
Q ss_pred CcceEEEEEEEeCCChHHHHHHHHHH
Q 006698 540 QKRVVHVYHLITSETLEWDKLRRQAR 565 (635)
Q Consensus 540 Q~~~V~vy~li~~~tiEe~i~~~~~~ 565 (635)
+.-.+..|++. .|-..+++.+.
T Consensus 396 --rsG~~ItlVtq--yDve~~qrIE~ 417 (476)
T KOG0330|consen 396 --RSGKAITLVTQ--YDVELVQRIEH 417 (476)
T ss_pred --CCcceEEEEeh--hhhHHHHHHHH
Confidence 67778889988 55555555543
No 44
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.94 E-value=4.9e-25 Score=243.83 Aligned_cols=344 Identities=15% Similarity=0.150 Sum_probs=218.4
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLT 147 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~q 147 (635)
+|+|||.+++..+.+ ++++++..++|+|||+..+.-+...+...+..++|||+| ..|..|
T Consensus 36 ~p~~~Q~~ai~~il~-------------------G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q 96 (742)
T TIGR03817 36 RPWQHQARAAELAHA-------------------GRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAAD 96 (742)
T ss_pred cCCHHHHHHHHHHHC-------------------CCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHH
Confidence 599999999998854 679999999999999887765555554455567899999 778888
Q ss_pred HHHHHHHhcC-CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhc--chh
Q 006698 148 WEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS--GDE 224 (635)
Q Consensus 148 W~~E~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~--~~~ 224 (635)
-.+++.++.. ++++..++|.. ....... .....+++++|++++....- ...
T Consensus 97 ~~~~l~~l~~~~i~v~~~~Gdt-----~~~~r~~---------------------i~~~~~IivtTPd~L~~~~L~~~~~ 150 (742)
T TIGR03817 97 QLRAVRELTLRGVRPATYDGDT-----PTEERRW---------------------AREHARYVLTNPDMLHRGILPSHAR 150 (742)
T ss_pred HHHHHHHhccCCeEEEEEeCCC-----CHHHHHH---------------------HhcCCCEEEEChHHHHHhhccchhH
Confidence 8888988752 33443333321 1111000 02356899999998864221 111
Q ss_pred hhhhhccCCCEEEEeCCCcCCC-cccHHHHHHHhc--------ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHH
Q 006698 225 LSGILLDLPGLFVFDEGHTPRN-DDTCMFKALSRI--------KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRT 295 (635)
Q Consensus 225 ~~~~~~~~~~~vIvDEaH~~kn-~~s~~~~~l~~l--------~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~ 295 (635)
+..+ ....++||+||||.+.+ ..+.....+..+ .....+++|||.- | +.++... ++.
T Consensus 151 ~~~~-l~~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~-n-~~~~~~~--l~g--------- 216 (742)
T TIGR03817 151 WARF-LRRLRYVVIDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTA-D-PAAAASR--LIG--------- 216 (742)
T ss_pred HHHH-HhcCCEEEEeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCC-C-HHHHHHH--HcC---------
Confidence 2222 34579999999999875 234444444443 2356899999952 2 2222110 000
Q ss_pred HHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhh
Q 006698 296 VRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEG 375 (635)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~ 375 (635)
.++... . .+.-|............... .
T Consensus 217 ---------------------------------------~~~~~i-~----~~~~~~~~~~~~~~~p~~~~------~-- 244 (742)
T TIGR03817 217 ---------------------------------------APVVAV-T----EDGSPRGARTVALWEPPLTE------L-- 244 (742)
T ss_pred ---------------------------------------CCeEEE-C----CCCCCcCceEEEEecCCccc------c--
Confidence 000000 0 00111111111111111000 0
Q ss_pred hhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHH
Q 006698 376 VKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQ 455 (635)
Q Consensus 376 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~ 455 (635)
...... .. .......+...+..++. .+.++||||+.+..++.+...
T Consensus 245 --------------~~~~~~-----------------~~-r~~~~~~~~~~l~~l~~--~~~~~IVF~~sr~~ae~l~~~ 290 (742)
T TIGR03817 245 --------------TGENGA-----------------PV-RRSASAEAADLLADLVA--EGARTLTFVRSRRGAELVAAI 290 (742)
T ss_pred --------------cccccc-----------------cc-ccchHHHHHHHHHHHHH--CCCCEEEEcCCHHHHHHHHHH
Confidence 000000 00 00001124555666665 478999999999999999998
Q ss_pred HHhhhcc---cCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhh
Q 006698 456 LRHRFNW---REGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAI 532 (635)
Q Consensus 456 L~~~~~~---~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~ 532 (635)
|...+.. ..+..+..++|++++++|.++.++|++ |++++|+ +|++++.|||+.+.+.||+|+.|-+...+.||+
T Consensus 291 l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~--G~i~vLV-aTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRi 367 (742)
T TIGR03817 291 ARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD--GELLGVA-TTNALELGVDISGLDAVVIAGFPGTRASLWQQA 367 (742)
T ss_pred HHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc--CCceEEE-ECchHhccCCcccccEEEEeCCCCCHHHHHHhc
Confidence 8765321 114677889999999999999999998 6788777 799999999999999999999999999999999
Q ss_pred hhhhhcCCcceEEEEEEEeCCChHHHHHHH
Q 006698 533 SRAYRLGQKRVVHVYHLITSETLEWDKLRR 562 (635)
Q Consensus 533 gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~ 562 (635)
||++|.|+.- .++.++..+..|...+..
T Consensus 368 GRaGR~G~~g--~ai~v~~~~~~d~~~~~~ 395 (742)
T TIGR03817 368 GRAGRRGQGA--LVVLVARDDPLDTYLVHH 395 (742)
T ss_pred cccCCCCCCc--EEEEEeCCChHHHHHHhC
Confidence 9999999754 344556666777765543
No 45
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.94 E-value=3.9e-25 Score=242.73 Aligned_cols=314 Identities=18% Similarity=0.131 Sum_probs=202.0
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~ 146 (635)
..+||+|.+++..++. ++.+|+..++|.|||+.....+.. . .+.+|||+| .+|+.
T Consensus 459 ~sFRp~Q~eaI~aiL~-------------------GrDVLVimPTGSGKSLcYQLPAL~---~--~GiTLVISPLiSLmq 514 (1195)
T PLN03137 459 HSFRPNQREIINATMS-------------------GYDVFVLMPTGGGKSLTYQLPALI---C--PGITLVISPLVSLIQ 514 (1195)
T ss_pred CCCCHHHHHHHHHHHc-------------------CCCEEEEcCCCccHHHHHHHHHHH---c--CCcEEEEeCHHHHHH
Confidence 4699999999998754 678999999999999776544422 1 346799999 77877
Q ss_pred HHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhc-chhh
Q 006698 147 TWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS-GDEL 225 (635)
Q Consensus 147 qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~-~~~~ 225 (635)
++...+... +++...+.+.. ........+..... -....+++++|++.+..... ...+
T Consensus 515 DQV~~L~~~--GI~Aa~L~s~~----s~~eq~~ilr~l~s---------------~~g~~~ILyvTPERL~~~d~ll~~L 573 (1195)
T PLN03137 515 DQIMNLLQA--NIPAASLSAGM----EWAEQLEILQELSS---------------EYSKYKLLYVTPEKVAKSDSLLRHL 573 (1195)
T ss_pred HHHHHHHhC--CCeEEEEECCC----CHHHHHHHHHHHHh---------------cCCCCCEEEEChHHhhcchHHHHHH
Confidence 666666553 23333333211 11111111111110 01356899999988653100 0111
Q ss_pred hhhh-ccCCCEEEEeCCCcCCCcccH---HHHH----HHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHH
Q 006698 226 SGIL-LDLPGLFVFDEGHTPRNDDTC---MFKA----LSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297 (635)
Q Consensus 226 ~~~~-~~~~~~vIvDEaH~~kn~~s~---~~~~----l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~ 297 (635)
..+. .....+|||||||.+-.++.. -++. ...++...+++||||.-.....|+...+.+..+..
T Consensus 574 ~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~v-------- 645 (1195)
T PLN03137 574 ENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVV-------- 645 (1195)
T ss_pred HhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEE--------
Confidence 1121 233688999999998654321 1222 22335677899999985544444443332211110
Q ss_pred hhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhh
Q 006698 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVK 377 (635)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~ 377 (635)
.+.. . .-|.....+ ++..
T Consensus 646 -----------------------------------------fr~S---f--~RpNL~y~V--v~k~-------------- 663 (1195)
T PLN03137 646 -----------------------------------------FRQS---F--NRPNLWYSV--VPKT-------------- 663 (1195)
T ss_pred -----------------------------------------eecc---c--CccceEEEE--eccc--------------
Confidence 0000 0 001111111 1000
Q ss_pred hHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc-CCCeEEEEcCChhHHHHHHHHH
Q 006698 378 SFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS-TNEKVLVFSQYIEPLTLIMEQL 456 (635)
Q Consensus 378 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~-~~~kviIFs~~~~~~~~l~~~L 456 (635)
......+..++... .+++.||||..+..++.+...|
T Consensus 664 -------------------------------------------kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L 700 (1195)
T PLN03137 664 -------------------------------------------KKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERL 700 (1195)
T ss_pred -------------------------------------------hhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHH
Confidence 00112233333322 4668999999999999999999
Q ss_pred HhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhh
Q 006698 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAY 536 (635)
Q Consensus 457 ~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~ 536 (635)
... |+.+..+||+++.++|..+++.|.. ++++||+ +|.+.|.|||+++.+.||+||+|.++..|.|++||++
T Consensus 701 ~~~-----Gika~~YHAGLs~eeR~~vqe~F~~--Gei~VLV-ATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAG 772 (1195)
T PLN03137 701 QEF-----GHKAAFYHGSMDPAQRAFVQKQWSK--DEINIIC-ATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAG 772 (1195)
T ss_pred HHC-----CCCeeeeeCCCCHHHHHHHHHHHhc--CCCcEEE-EechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccC
Confidence 987 9999999999999999999999998 5677777 5999999999999999999999999999999999999
Q ss_pred hcCCcceEEEE
Q 006698 537 RLGQKRVVHVY 547 (635)
Q Consensus 537 R~GQ~~~V~vy 547 (635)
|.|+.-.+..|
T Consensus 773 RDG~~g~cILl 783 (1195)
T PLN03137 773 RDGQRSSCVLY 783 (1195)
T ss_pred CCCCCceEEEE
Confidence 99987655544
No 46
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.94 E-value=1.4e-24 Score=245.29 Aligned_cols=111 Identities=18% Similarity=0.146 Sum_probs=94.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcc-cCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccC
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNW-REGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~-~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a 513 (635)
.+.++||||+.+..++.+...|...++. ..+..+..+||+++.++|..+.+.|++ |.++|++ +|++++.|||+.+.
T Consensus 283 ~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~--G~i~vLV-aTs~Le~GIDip~V 359 (876)
T PRK13767 283 EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKR--GELKVVV-SSTSLELGIDIGYI 359 (876)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHc--CCCeEEE-ECChHHhcCCCCCC
Confidence 4678999999999999999999875421 124678999999999999999999998 6677777 69999999999999
Q ss_pred CeEEEeCCCCChhhHHhhhhhhhhc-CCcceEEEEE
Q 006698 514 SRVVLLDVVWNPFVERQAISRAYRL-GQKRVVHVYH 548 (635)
Q Consensus 514 ~~vi~~d~~wnp~~~~Qa~gR~~R~-GQ~~~V~vy~ 548 (635)
+.||++++|.++..+.||+||++|. |+.....++-
T Consensus 360 d~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 360 DLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred cEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 9999999999999999999999986 4444555554
No 47
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=7.5e-25 Score=223.16 Aligned_cols=332 Identities=18% Similarity=0.205 Sum_probs=223.6
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh------CCCC-CcEEEeC
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL------HPRC-RPVIIAP 141 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~------~~~~-~~LIv~P 141 (635)
.+.|-|..+.-.++. ++.++....+|+|||+.-+.-+..++.. ...+ .+||++|
T Consensus 113 ~PtpIQaq~wp~~l~-------------------GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~P 173 (519)
T KOG0331|consen 113 KPTPIQAQGWPIALS-------------------GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAP 173 (519)
T ss_pred CCchhhhcccceecc-------------------CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcC
Confidence 577778777655543 7899999999999997655433333332 1223 3699999
Q ss_pred -ccchHHHHHHHHHhcCCCc--ccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHH
Q 006698 142 -RSMLLTWEEEFKKWGIDIP--FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEK 218 (635)
Q Consensus 142 -~~l~~qW~~E~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~ 218 (635)
.-|..|-++++.++...+. ...+.|....+...+.. ..+.+|+|.|+..+..
T Consensus 174 TRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l-------------------------~~gvdiviaTPGRl~d 228 (519)
T KOG0331|consen 174 TRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDL-------------------------ERGVDVVIATPGRLID 228 (519)
T ss_pred cHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHH-------------------------hcCCcEEEeCChHHHH
Confidence 7788999999999977655 34444433333222211 3578999999999887
Q ss_pred hhcchhhhhhhccCCCEEEEeCCCcCCC--cccHHHHHHHhc-ccC-cEEEEecccCCCChhhHHHHHHhhhhhhhhhHH
Q 006698 219 LVSGDELSGILLDLPGLFVFDEGHTPRN--DDTCMFKALSRI-KTR-RRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294 (635)
Q Consensus 219 ~~~~~~~~~~~~~~~~~vIvDEaH~~kn--~~s~~~~~l~~l-~~~-~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~ 294 (635)
+... ..+......++|+|||.++-. ...+.-+.+..+ ++. ..++-|||- +.++..
T Consensus 229 ~le~---g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTw----p~~v~~-------------- 287 (519)
T KOG0331|consen 229 LLEE---GSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATW----PKEVRQ-------------- 287 (519)
T ss_pred HHHc---CCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeec----cHHHHH--------------
Confidence 7644 234445678999999999854 457788888888 444 478889994 222111
Q ss_pred HHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHh
Q 006698 295 TVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVE 374 (635)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~ 374 (635)
+-..|+.... ...+.... .+
T Consensus 288 --------------------------------------lA~~fl~~~~-----------~i~ig~~~---~~-------- 307 (519)
T KOG0331|consen 288 --------------------------------------LAEDFLNNPI-----------QINVGNKK---EL-------- 307 (519)
T ss_pred --------------------------------------HHHHHhcCce-----------EEEecchh---hh--------
Confidence 1111111000 01111000 00
Q ss_pred hhhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc---CCCeEEEEcCChhHHHH
Q 006698 375 GVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTL 451 (635)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~---~~~kviIFs~~~~~~~~ 451 (635)
..... +.++........|...|..+|... .+.|+||||+....++.
T Consensus 308 ------~a~~~-------------------------i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~ 356 (519)
T KOG0331|consen 308 ------KANHN-------------------------IRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDE 356 (519)
T ss_pred ------hhhcc-------------------------hhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHH
Confidence 00000 001111111244666677776665 67799999999999999
Q ss_pred HHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhh
Q 006698 452 IMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531 (635)
Q Consensus 452 l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa 531 (635)
|.+.|... ++++..|||..++.+|..+++.|++ |+..||+ +|++++.|||+.+.++||+||+|-|...|.+|
T Consensus 357 l~~~l~~~-----~~~a~~iHGd~sQ~eR~~~L~~Fre--G~~~vLV-ATdVAaRGLDi~dV~lVInydfP~~vEdYVHR 428 (519)
T KOG0331|consen 357 LARNLRRK-----GWPAVAIHGDKSQSERDWVLKGFRE--GKSPVLV-ATDVAARGLDVPDVDLVINYDFPNNVEDYVHR 428 (519)
T ss_pred HHHHHHhc-----CcceeeecccccHHHHHHHHHhccc--CCcceEE-EcccccccCCCccccEEEeCCCCCCHHHHHhh
Confidence 99999987 8999999999999999999999998 5677777 69999999999999999999999999999999
Q ss_pred hhhhhhcCCcceEEEEEEEeCC--ChHHHHHHHHHHh
Q 006698 532 ISRAYRLGQKRVVHVYHLITSE--TLEWDKLRRQARK 566 (635)
Q Consensus 532 ~gR~~R~GQ~~~V~vy~li~~~--tiEe~i~~~~~~K 566 (635)
+||.+|-|++=. .|.|++.. .+...+.+.+.++
T Consensus 429 iGRTGRa~~~G~--A~tfft~~~~~~a~~l~~~l~e~ 463 (519)
T KOG0331|consen 429 IGRTGRAGKKGT--AITFFTSDNAKLARELIKVLREA 463 (519)
T ss_pred cCccccCCCCce--EEEEEeHHHHHHHHHHHHHHHHc
Confidence 999999876543 34444433 2334444555443
No 48
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.93 E-value=8.4e-24 Score=236.07 Aligned_cols=316 Identities=16% Similarity=0.163 Sum_probs=205.2
Q ss_pred HHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccc
Q 006698 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSM 144 (635)
Q Consensus 66 l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l 144 (635)
+.-+|.|.|..++..+.+.+.. ..+..++++.++|+|||.+++..+...... ...++|+|| ..|
T Consensus 448 ~~f~~T~~Q~~aI~~I~~d~~~-------------~~~~d~Ll~adTGsGKT~val~a~l~al~~--g~qvlvLvPT~~L 512 (926)
T TIGR00580 448 FPFEETPDQLKAIEEIKADMES-------------PRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--GKQVAVLVPTTLL 512 (926)
T ss_pred CCCCCCHHHHHHHHHHHhhhcc-------------cCcCCEEEECCCCccHHHHHHHHHHHHHHh--CCeEEEEeCcHHH
Confidence 3446899999999999775432 124578999999999999887655444333 357899999 667
Q ss_pred hHHHHHHHHHhcCCCcc--cccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcc
Q 006698 145 LLTWEEEFKKWGIDIPF--YNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222 (635)
Q Consensus 145 ~~qW~~E~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~ 222 (635)
..|..+.+.+++.+.++ ..+++.. .+.+.... ..... ....+|+|.|+..+.+.
T Consensus 513 A~Q~~~~f~~~~~~~~i~v~~Lsg~~-~~~e~~~~---~~~l~-----------------~g~~dIVIGTp~ll~~~--- 568 (926)
T TIGR00580 513 AQQHFETFKERFANFPVTIELLSRFR-SAKEQNEI---LKELA-----------------SGKIDILIGTHKLLQKD--- 568 (926)
T ss_pred HHHHHHHHHHHhccCCcEEEEEeccc-cHHHHHHH---HHHHH-----------------cCCceEEEchHHHhhCC---
Confidence 78999999987665433 3333211 11111111 11111 12468999999665432
Q ss_pred hhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhh
Q 006698 223 DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301 (635)
Q Consensus 223 ~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~ 301 (635)
+.....++|||||+|++.. .....+..+ ...++++|||||++..+... +....++.
T Consensus 569 -----v~f~~L~llVIDEahrfgv---~~~~~L~~~~~~~~vL~~SATpiprtl~~~--l~g~~d~s------------- 625 (926)
T TIGR00580 569 -----VKFKDLGLLIIDEEQRFGV---KQKEKLKELRTSVDVLTLSATPIPRTLHMS--MSGIRDLS------------- 625 (926)
T ss_pred -----CCcccCCEEEeecccccch---hHHHHHHhcCCCCCEEEEecCCCHHHHHHH--HhcCCCcE-------------
Confidence 2234568999999999732 344555555 45689999999964322110 00000000
Q ss_pred hhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCce--EEEEEeCCcHHHHHHHHHHhhhhhH
Q 006698 302 EISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLR--HSVVILQPDEFQKRLCKAVEGVKSF 379 (635)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~--~~~v~~~~s~~q~~~y~~~~~~~~~ 379 (635)
+ + ...|... ......+.++ ..+
T Consensus 626 ------------------------------------~-------I-~~~p~~R~~V~t~v~~~~~--~~i---------- 649 (926)
T TIGR00580 626 ------------------------------------I-------I-ATPPEDRLPVRTFVMEYDP--ELV---------- 649 (926)
T ss_pred ------------------------------------E-------E-ecCCCCccceEEEEEecCH--HHH----------
Confidence 0 0 0001000 0000111110 000
Q ss_pred HHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhh
Q 006698 380 VELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR 459 (635)
Q Consensus 380 ~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~ 459 (635)
+ ..+...+. .+.+++|||+....++.+.+.|.+.
T Consensus 650 -------------------------------------------~-~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~ 683 (926)
T TIGR00580 650 -------------------------------------------R-EAIRRELL--RGGQVFYVHNRIESIEKLATQLREL 683 (926)
T ss_pred -------------------------------------------H-HHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHh
Confidence 0 00111111 5789999999999999999999986
Q ss_pred hcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCC-CChhhHHhhhhhhhhc
Q 006698 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVV-WNPFVERQAISRAYRL 538 (635)
Q Consensus 460 ~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~-wnp~~~~Qa~gR~~R~ 538 (635)
+ ++.++..+||.++.++|.+++++|.+ ++.+||| +|++.+.|+|++++++||+++++ +..+.+.|++||++|.
T Consensus 684 ~---p~~~v~~lHG~m~~~eRe~im~~F~~--Gk~~ILV-aT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~ 757 (926)
T TIGR00580 684 V---PEARIAIAHGQMTENELEEVMLEFYK--GEFQVLV-CTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRS 757 (926)
T ss_pred C---CCCeEEEecCCCCHHHHHHHHHHHHc--CCCCEEE-ECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCC
Confidence 5 37899999999999999999999998 6677777 69999999999999999999985 4677899999999998
Q ss_pred CCcceEEEEEEEeCC
Q 006698 539 GQKRVVHVYHLITSE 553 (635)
Q Consensus 539 GQ~~~V~vy~li~~~ 553 (635)
|. .-++|.++..+
T Consensus 758 g~--~g~aill~~~~ 770 (926)
T TIGR00580 758 KK--KAYAYLLYPHQ 770 (926)
T ss_pred CC--CeEEEEEECCc
Confidence 85 45556666543
No 49
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.93 E-value=1.6e-23 Score=231.08 Aligned_cols=315 Identities=16% Similarity=0.161 Sum_probs=201.3
Q ss_pred hHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-cc
Q 006698 65 DVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RS 143 (635)
Q Consensus 65 ~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~ 143 (635)
.+.-+|.++|.+++.-+.....+ ....+.+|..++|+|||++++..+...... ...+||++| ..
T Consensus 257 ~l~f~lt~~Q~~ai~~I~~d~~~-------------~~~~~~Ll~~~TGSGKT~va~~~il~~~~~--g~q~lilaPT~~ 321 (681)
T PRK10917 257 SLPFELTGAQKRVVAEILADLAS-------------PKPMNRLLQGDVGSGKTVVAALAALAAIEA--GYQAALMAPTEI 321 (681)
T ss_pred hCCCCCCHHHHHHHHHHHHhhhc-------------cCCceEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEeccHH
Confidence 34457999999999998775432 123478999999999999988766554443 447899999 67
Q ss_pred chHHHHHHHHHhcCC--CcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhc
Q 006698 144 MLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221 (635)
Q Consensus 144 l~~qW~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~ 221 (635)
|..|+.+.+.+++++ +++..+++..... +.... ..... ....+|+|.|+..+...
T Consensus 322 LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~-~r~~~---~~~l~-----------------~g~~~IvVgT~~ll~~~-- 378 (681)
T PRK10917 322 LAEQHYENLKKLLEPLGIRVALLTGSLKGK-ERREI---LEAIA-----------------SGEADIVIGTHALIQDD-- 378 (681)
T ss_pred HHHHHHHHHHHHHhhcCcEEEEEcCCCCHH-HHHHH---HHHHh-----------------CCCCCEEEchHHHhccc--
Confidence 779999999998765 4555555432111 11111 11110 12578999999876532
Q ss_pred chhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhh
Q 006698 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300 (635)
Q Consensus 222 ~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~ 300 (635)
......++||+||+|++. ......+... ...+.++|||||++..+. +. .++
T Consensus 379 ------v~~~~l~lvVIDE~Hrfg---~~qr~~l~~~~~~~~iL~~SATp~prtl~----~~---------------~~g 430 (681)
T PRK10917 379 ------VEFHNLGLVIIDEQHRFG---VEQRLALREKGENPHVLVMTATPIPRTLA----MT---------------AYG 430 (681)
T ss_pred ------chhcccceEEEechhhhh---HHHHHHHHhcCCCCCEEEEeCCCCHHHHH----HH---------------HcC
Confidence 123456899999999973 2233444443 457899999999642211 00 000
Q ss_pred hhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCce--EEEEEeCCcHHHHHHHHHHhhhhh
Q 006698 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLR--HSVVILQPDEFQKRLCKAVEGVKS 378 (635)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~--~~~v~~~~s~~q~~~y~~~~~~~~ 378 (635)
. +. .. ....+|+.. .....+..+. ...+
T Consensus 431 ~--------------------------------~~-------~s-~i~~~p~~r~~i~~~~~~~~~-~~~~--------- 460 (681)
T PRK10917 431 D--------------------------------LD-------VS-VIDELPPGRKPITTVVIPDSR-RDEV--------- 460 (681)
T ss_pred C--------------------------------Cc-------eE-EEecCCCCCCCcEEEEeCccc-HHHH---------
Confidence 0 00 00 001122211 0111111000 0000
Q ss_pred HHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChh--------HHH
Q 006698 379 FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIE--------PLT 450 (635)
Q Consensus 379 ~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~--------~~~ 450 (635)
...+.+.+. .+++++|||.... .+.
T Consensus 461 ---------------------------------------------~~~i~~~~~--~g~q~~v~~~~ie~s~~l~~~~~~ 493 (681)
T PRK10917 461 ---------------------------------------------YERIREEIA--KGRQAYVVCPLIEESEKLDLQSAE 493 (681)
T ss_pred ---------------------------------------------HHHHHHHHH--cCCcEEEEEcccccccchhHHHHH
Confidence 111222221 6789999997542 344
Q ss_pred HHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCC-ChhhHH
Q 006698 451 LIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVW-NPFVER 529 (635)
Q Consensus 451 ~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~w-np~~~~ 529 (635)
.+.+.|.+.+. ++++..+||+++.++|+.++++|.+ ++.+||+ +|++.++|+|+++++.||+++++. ..+.+.
T Consensus 494 ~~~~~L~~~~~---~~~v~~lHG~m~~~eR~~i~~~F~~--g~~~ILV-aT~vie~GiDip~v~~VIi~~~~r~gls~lh 567 (681)
T PRK10917 494 ETYEELQEAFP---ELRVGLLHGRMKPAEKDAVMAAFKA--GEIDILV-ATTVIEVGVDVPNATVMVIENAERFGLAQLH 567 (681)
T ss_pred HHHHHHHHHCC---CCcEEEEeCCCCHHHHHHHHHHHHc--CCCCEEE-ECcceeeCcccCCCcEEEEeCCCCCCHHHHH
Confidence 56667766542 5789999999999999999999997 5677776 799999999999999999999975 578899
Q ss_pred hhhhhhhhcCCcceEEEEEEE
Q 006698 530 QAISRAYRLGQKRVVHVYHLI 550 (635)
Q Consensus 530 Qa~gR~~R~GQ~~~V~vy~li 550 (635)
|+.||++|.|..- ++|.+.
T Consensus 568 Q~~GRvGR~g~~g--~~ill~ 586 (681)
T PRK10917 568 QLRGRVGRGAAQS--YCVLLY 586 (681)
T ss_pred HHhhcccCCCCce--EEEEEE
Confidence 9999999988654 444444
No 50
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.93 E-value=6.3e-24 Score=232.85 Aligned_cols=312 Identities=15% Similarity=0.171 Sum_probs=198.7
Q ss_pred HHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccc
Q 006698 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSM 144 (635)
Q Consensus 66 l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l 144 (635)
+.-+|.++|.+++..++..... ....+.++..++|+|||++++..+...... ...++|++| ..|
T Consensus 232 lpf~lt~~Q~~ai~~I~~~~~~-------------~~~~~~Ll~g~TGSGKT~va~l~il~~~~~--g~qvlilaPT~~L 296 (630)
T TIGR00643 232 LPFKLTRAQKRVVKEILQDLKS-------------DVPMNRLLQGDVGSGKTLVAALAMLAAIEA--GYQVALMAPTEIL 296 (630)
T ss_pred CCCCCCHHHHHHHHHHHHHhcc-------------CCCccEEEECCCCCcHHHHHHHHHHHHHHc--CCcEEEECCHHHH
Confidence 3457999999999998775432 123467999999999999887665554443 347899999 677
Q ss_pred hHHHHHHHHHhcCC--CcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcc
Q 006698 145 LLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222 (635)
Q Consensus 145 ~~qW~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~ 222 (635)
..|+.+++.++++. +++..+.+..... ..... ..... ....+|+|.|+..+...
T Consensus 297 A~Q~~~~~~~l~~~~gi~v~lltg~~~~~-~r~~~---~~~i~-----------------~g~~~IiVgT~~ll~~~--- 352 (630)
T TIGR00643 297 AEQHYNSLRNLLAPLGIEVALLTGSLKGK-RRKEL---LETIA-----------------SGQIHLVVGTHALIQEK--- 352 (630)
T ss_pred HHHHHHHHHHHhcccCcEEEEEecCCCHH-HHHHH---HHHHh-----------------CCCCCEEEecHHHHhcc---
Confidence 79999999998764 5555555432211 11111 11110 13568999999877532
Q ss_pred hhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhcc---cCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhh
Q 006698 223 DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIK---TRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS 299 (635)
Q Consensus 223 ~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~---~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~ 299 (635)
+.....++||+||+|++.- .++........ ..+.++|||||++..+. +.. +
T Consensus 353 -----~~~~~l~lvVIDEaH~fg~--~qr~~l~~~~~~~~~~~~l~~SATp~prtl~----l~~---------------~ 406 (630)
T TIGR00643 353 -----VEFKRLALVIIDEQHRFGV--EQRKKLREKGQGGFTPHVLVMSATPIPRTLA----LTV---------------Y 406 (630)
T ss_pred -----ccccccceEEEechhhccH--HHHHHHHHhcccCCCCCEEEEeCCCCcHHHH----HHh---------------c
Confidence 2234568999999999742 22222222223 57899999999653221 000 0
Q ss_pred hhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCce--EEEEEeCCcHHHHHHHHHHhhhh
Q 006698 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLR--HSVVILQPDEFQKRLCKAVEGVK 377 (635)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~--~~~v~~~~s~~q~~~y~~~~~~~ 377 (635)
+. +. ......+|... .....+..+. ...+|+.
T Consensus 407 ~~--------------------------------l~--------~~~i~~~p~~r~~i~~~~~~~~~-~~~~~~~----- 440 (630)
T TIGR00643 407 GD--------------------------------LD--------TSIIDELPPGRKPITTVLIKHDE-KDIVYEF----- 440 (630)
T ss_pred CC--------------------------------cc--------eeeeccCCCCCCceEEEEeCcch-HHHHHHH-----
Confidence 00 00 00001222111 0111111110 0111111
Q ss_pred hHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCCh--------hHH
Q 006698 378 SFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYI--------EPL 449 (635)
Q Consensus 378 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~--------~~~ 449 (635)
+.+.+. .+.+++|||... ..+
T Consensus 441 -------------------------------------------------i~~~l~--~g~q~~v~~~~i~~s~~~~~~~a 469 (630)
T TIGR00643 441 -------------------------------------------------IEEEIA--KGRQAYVVYPLIEESEKLDLKAA 469 (630)
T ss_pred -------------------------------------------------HHHHHH--hCCcEEEEEccccccccchHHHH
Confidence 111111 577888888764 334
Q ss_pred HHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCC-ChhhH
Q 006698 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVW-NPFVE 528 (635)
Q Consensus 450 ~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~w-np~~~ 528 (635)
..+.+.|...+ +++.+..+||+++.++|..+++.|++ ++.+||+ +|++.++|+|+++++.||+++++. +.+.+
T Consensus 470 ~~~~~~L~~~~---~~~~v~~lHG~m~~~eR~~i~~~F~~--g~~~ILV-aT~vie~GvDiP~v~~VIi~~~~r~gls~l 543 (630)
T TIGR00643 470 EALYERLKKAF---PKYNVGLLHGRMKSDEKEAVMEEFRE--GEVDILV-ATTVIEVGVDVPNATVMVIEDAERFGLSQL 543 (630)
T ss_pred HHHHHHHHhhC---CCCcEEEEeCCCCHHHHHHHHHHHHc--CCCCEEE-ECceeecCcccCCCcEEEEeCCCcCCHHHH
Confidence 55666676654 38899999999999999999999997 5677777 699999999999999999999874 77899
Q ss_pred HhhhhhhhhcCCcceEE
Q 006698 529 RQAISRAYRLGQKRVVH 545 (635)
Q Consensus 529 ~Qa~gR~~R~GQ~~~V~ 545 (635)
.|+.||++|-|..-.+.
T Consensus 544 hQ~~GRvGR~g~~g~~i 560 (630)
T TIGR00643 544 HQLRGRVGRGDHQSYCL 560 (630)
T ss_pred HHHhhhcccCCCCcEEE
Confidence 99999999998654443
No 51
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=1.7e-23 Score=222.96 Aligned_cols=332 Identities=22% Similarity=0.287 Sum_probs=229.7
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHH--hCCCCC-cEEEeC-cc
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMK--LHPRCR-PVIIAP-RS 143 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~--~~~~~~-~LIv~P-~~ 143 (635)
..+.|.|..++..++. ++.++..+.+|+|||+.-+.-+...+. ...... .||++| ..
T Consensus 50 ~~pt~IQ~~~IP~~l~-------------------g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRE 110 (513)
T COG0513 50 EEPTPIQLAAIPLILA-------------------GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRE 110 (513)
T ss_pred CCCCHHHHHHHHHHhC-------------------CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHH
Confidence 3588999999988865 679999999999999665544444443 222222 799999 66
Q ss_pred chHHHHHHHHHhcCC---CcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhh
Q 006698 144 MLLTWEEEFKKWGID---IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV 220 (635)
Q Consensus 144 l~~qW~~E~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~ 220 (635)
|..|-.+++.++... +.+..+.|........ ..+ ..+.+|+|.|+..+..+.
T Consensus 111 LA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~-------~~l------------------~~~~~ivVaTPGRllD~i 165 (513)
T COG0513 111 LAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI-------EAL------------------KRGVDIVVATPGRLLDLI 165 (513)
T ss_pred HHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHH-------HHH------------------hcCCCEEEECccHHHHHH
Confidence 778888998887543 3333333321111111 111 225789999999888776
Q ss_pred cchhhhhhhccCCCEEEEeCCCcCCCcc--cHHHHHHHhcc-cCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHH
Q 006698 221 SGDELSGILLDLPGLFVFDEGHTPRNDD--TCMFKALSRIK-TRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297 (635)
Q Consensus 221 ~~~~~~~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~l~-~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~ 297 (635)
... .+......++|+|||.++-+.+ ......+..++ .+..++.|||.-. ...++ .
T Consensus 166 ~~~---~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~-~i~~l---~--------------- 223 (513)
T COG0513 166 KRG---KLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPD-DIREL---A--------------- 223 (513)
T ss_pred HcC---CcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCH-HHHHH---H---------------
Confidence 553 4555567899999999997753 34455555554 4778999999621 11111 0
Q ss_pred hhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhh-cchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhh
Q 006698 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKI-APFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGV 376 (635)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~ 376 (635)
+..+ .|..............+.....++.+.-
T Consensus 224 ---------------------------------~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~-------------- 256 (513)
T COG0513 224 ---------------------------------RRYLNDPVEIEVSVEKLERTLKKIKQFYLEVES-------------- 256 (513)
T ss_pred ---------------------------------HHHccCCcEEEEccccccccccCceEEEEEeCC--------------
Confidence 0000 1111111101110011222222222210
Q ss_pred hhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHH
Q 006698 377 KSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQL 456 (635)
Q Consensus 377 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L 456 (635)
...|...|..++......++||||+....++.|...|
T Consensus 257 -------------------------------------------~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l 293 (513)
T COG0513 257 -------------------------------------------EEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESL 293 (513)
T ss_pred -------------------------------------------HHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHH
Confidence 0138888888888876678999999999999999999
Q ss_pred HhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhh
Q 006698 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAY 536 (635)
Q Consensus 457 ~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~ 536 (635)
... |+.+..|||++++++|.+.++.|++ +..+||| +|++++.|||+...++||+||+|.++..|.+|+||.+
T Consensus 294 ~~~-----g~~~~~lhG~l~q~~R~~~l~~F~~--g~~~vLV-aTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTg 365 (513)
T COG0513 294 RKR-----GFKVAALHGDLPQEERDRALEKFKD--GELRVLV-ATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTG 365 (513)
T ss_pred HHC-----CCeEEEecCCCCHHHHHHHHHHHHc--CCCCEEE-EechhhccCCccccceeEEccCCCCHHHheeccCccc
Confidence 998 9999999999999999999999997 6788888 5999999999999999999999999999999999999
Q ss_pred hcCCcceEEEEEEEeCCChHHHHHHHHHHh
Q 006698 537 RLGQKRVVHVYHLITSETLEWDKLRRQARK 566 (635)
Q Consensus 537 R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K 566 (635)
|.| +.-..+.|++. .-|...+..++..
T Consensus 366 RaG--~~G~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 366 RAG--RKGVAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred cCC--CCCeEEEEeCc-HHHHHHHHHHHHH
Confidence 999 45566777776 3356666666655
No 52
>PRK02362 ski2-like helicase; Provisional
Probab=99.92 E-value=1.5e-23 Score=234.78 Aligned_cols=326 Identities=17% Similarity=0.171 Sum_probs=203.4
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLT 147 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~q 147 (635)
+|+|+|.+++...+.. +++++++.++|+|||+.+...+...+. +.+++|+|+| .+|+.|
T Consensus 23 ~l~p~Q~~ai~~~~~~------------------g~nvlv~APTGSGKTlia~lail~~l~--~~~kal~i~P~raLa~q 82 (737)
T PRK02362 23 ELYPPQAEAVEAGLLD------------------GKNLLAAIPTASGKTLIAELAMLKAIA--RGGKALYIVPLRALASE 82 (737)
T ss_pred cCCHHHHHHHHHHHhC------------------CCcEEEECCCcchHHHHHHHHHHHHHh--cCCcEEEEeChHHHHHH
Confidence 6999999999864331 679999999999999998655544433 3568999999 889999
Q ss_pred HHHHHHHhcC-CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhh
Q 006698 148 WEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELS 226 (635)
Q Consensus 148 W~~E~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~ 226 (635)
+.+++.++.+ ++++..+.+..... ..|....+|+|+|++.+..+.+...
T Consensus 83 ~~~~~~~~~~~g~~v~~~tGd~~~~----------------------------~~~l~~~~IiV~Tpek~~~llr~~~-- 132 (737)
T PRK02362 83 KFEEFERFEELGVRVGISTGDYDSR----------------------------DEWLGDNDIIVATSEKVDSLLRNGA-- 132 (737)
T ss_pred HHHHHHHhhcCCCEEEEEeCCcCcc----------------------------ccccCCCCEEEECHHHHHHHHhcCh--
Confidence 9999998743 34444443311000 0122457899999998877665311
Q ss_pred hhhccCCCEEEEeCCCcCCCcc--cHHHHHHHhc----ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhh
Q 006698 227 GILLDLPGLFVFDEGHTPRNDD--TCMFKALSRI----KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300 (635)
Q Consensus 227 ~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~l----~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~ 300 (635)
......++||+||+|.+.+.. ...-..+..+ ...+.++||||+- ++.++.. +++...+..
T Consensus 133 -~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~--n~~~la~---wl~~~~~~~-------- 198 (737)
T PRK02362 133 -PWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIG--NADELAD---WLDAELVDS-------- 198 (737)
T ss_pred -hhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCC--CHHHHHH---HhCCCcccC--------
Confidence 112346999999999986532 1111222222 4567899999972 3444432 221110000
Q ss_pred hhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHH
Q 006698 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFV 380 (635)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~ 380 (635)
..+|. | ....+...-. +
T Consensus 199 --------------------------------~~rpv-------------~--l~~~v~~~~~-----~----------- 215 (737)
T PRK02362 199 --------------------------------EWRPI-------------D--LREGVFYGGA-----I----------- 215 (737)
T ss_pred --------------------------------CCCCC-------------C--CeeeEecCCe-----e-----------
Confidence 00000 0 0000000000 0
Q ss_pred HHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhh
Q 006698 381 ELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460 (635)
Q Consensus 381 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~ 460 (635)
..+. . ..... ......+...+.+.+. .+.++||||+.+..++.+...|....
T Consensus 216 ----------~~~~----~-~~~~~-----------~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~ 267 (737)
T PRK02362 216 ----------HFDD----S-QREVE-----------VPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASAL 267 (737)
T ss_pred ----------cccc----c-cccCC-----------CccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHh
Confidence 0000 0 00000 0000112333333333 67899999999988887777776442
Q ss_pred cc--------------------cC-----------CceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccc
Q 006698 461 NW--------------------RE-----------GQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509 (635)
Q Consensus 461 ~~--------------------~~-----------g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~Gln 509 (635)
.. .+ ...+...||+++.++|..+.+.|++ |.++|++ +|.+++.|+|
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~--G~i~VLv-aT~tla~Gvn 344 (737)
T PRK02362 268 KKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRD--RLIKVIS-STPTLAAGLN 344 (737)
T ss_pred hhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHc--CCCeEEE-echhhhhhcC
Confidence 10 00 1357889999999999999999998 6788877 6999999999
Q ss_pred cccCCeEEE----eC-----CCCChhhHHhhhhhhhhcCCcceEEEEEEEeC
Q 006698 510 LVGASRVVL----LD-----VVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552 (635)
Q Consensus 510 L~~a~~vi~----~d-----~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~ 552 (635)
+++...||. || .|.++..+.|++||++|.|....-.++-++..
T Consensus 345 lPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 345 LPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred CCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecC
Confidence 998877776 77 57888999999999999998765566656543
No 53
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.91 E-value=1e-22 Score=232.40 Aligned_cols=318 Identities=13% Similarity=0.138 Sum_probs=202.5
Q ss_pred hHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-cc
Q 006698 65 DVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RS 143 (635)
Q Consensus 65 ~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~ 143 (635)
.+.-.+.|.|.+++.-+...... ..+..++++.+||+|||.+++..+..... ..+.+||+|| ..
T Consensus 596 ~~~~~~T~~Q~~aI~~il~d~~~-------------~~~~d~Ll~a~TGsGKT~val~aa~~~~~--~g~qvlvLvPT~e 660 (1147)
T PRK10689 596 SFPFETTPDQAQAINAVLSDMCQ-------------PLAMDRLVCGDVGFGKTEVAMRAAFLAVE--NHKQVAVLVPTTL 660 (1147)
T ss_pred hCCCCCCHHHHHHHHHHHHHhhc-------------CCCCCEEEEcCCCcCHHHHHHHHHHHHHH--cCCeEEEEeCcHH
Confidence 34447999999999988764322 23467999999999999887744433222 3457899999 56
Q ss_pred chHHHHHHHHHhcCCC--cccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhc
Q 006698 144 MLLTWEEEFKKWGIDI--PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221 (635)
Q Consensus 144 l~~qW~~E~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~ 221 (635)
|..|..+.+.+++... ++..+.+... ..+. ...+.... ....+|+|.|++.+...
T Consensus 661 LA~Q~~~~f~~~~~~~~v~i~~l~g~~s-~~e~---~~il~~l~-----------------~g~~dIVVgTp~lL~~~-- 717 (1147)
T PRK10689 661 LAQQHYDNFRDRFANWPVRIEMLSRFRS-AKEQ---TQILAEAA-----------------EGKIDILIGTHKLLQSD-- 717 (1147)
T ss_pred HHHHHHHHHHHhhccCCceEEEEECCCC-HHHH---HHHHHHHH-----------------hCCCCEEEECHHHHhCC--
Confidence 6688888888765443 3333333211 1111 11111110 12568999999876432
Q ss_pred chhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhh
Q 006698 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300 (635)
Q Consensus 222 ~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~ 300 (635)
+.....++|||||+|++.. .....++.+ ....++++||||++....... ..+.+|
T Consensus 718 ------v~~~~L~lLVIDEahrfG~---~~~e~lk~l~~~~qvLl~SATpiprtl~l~~--~gl~d~------------- 773 (1147)
T PRK10689 718 ------VKWKDLGLLIVDEEHRFGV---RHKERIKAMRADVDILTLTATPIPRTLNMAM--SGMRDL------------- 773 (1147)
T ss_pred ------CCHhhCCEEEEechhhcch---hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHH--hhCCCc-------------
Confidence 2224578999999999832 233445555 456899999999654321100 000000
Q ss_pred hhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHH
Q 006698 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFV 380 (635)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~ 380 (635)
.++.. ... ..+|- ..... .....
T Consensus 774 ------------------------------------~~I~~-~p~--~r~~v-~~~~~--~~~~~--------------- 796 (1147)
T PRK10689 774 ------------------------------------SIIAT-PPA--RRLAV-KTFVR--EYDSL--------------- 796 (1147)
T ss_pred ------------------------------------EEEec-CCC--CCCCc-eEEEE--ecCcH---------------
Confidence 00000 000 00110 00000 00000
Q ss_pred HHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhh
Q 006698 381 ELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460 (635)
Q Consensus 381 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~ 460 (635)
..|...+.++. .+.+++||++.+..++.+.+.|.+.+
T Consensus 797 ----------------------------------------~~k~~il~el~---r~gqv~vf~n~i~~ie~la~~L~~~~ 833 (1147)
T PRK10689 797 ----------------------------------------VVREAILREIL---RGGQVYYLYNDVENIQKAAERLAELV 833 (1147)
T ss_pred ----------------------------------------HHHHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHHHhC
Confidence 00111122222 46789999999999999999998875
Q ss_pred cccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCC-CChhhHHhhhhhhhhcC
Q 006698 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVV-WNPFVERQAISRAYRLG 539 (635)
Q Consensus 461 ~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~-wnp~~~~Qa~gR~~R~G 539 (635)
++..+..+||+++.++|++++.+|.+ ++.+||| +|++.+.|||++++++||+.+++ ++...+.|++||++|.|
T Consensus 834 ---p~~~v~~lHG~m~q~eRe~im~~Fr~--Gk~~VLV-aTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g 907 (1147)
T PRK10689 834 ---PEARIAIGHGQMRERELERVMNDFHH--QRFNVLV-CTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH 907 (1147)
T ss_pred ---CCCcEEEEeCCCCHHHHHHHHHHHHh--cCCCEEE-ECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCC
Confidence 37789999999999999999999998 6677777 69999999999999999987764 67888999999999998
Q ss_pred CcceEEEEEEEeC
Q 006698 540 QKRVVHVYHLITS 552 (635)
Q Consensus 540 Q~~~V~vy~li~~ 552 (635)
++ .++|.+...
T Consensus 908 ~~--g~a~ll~~~ 918 (1147)
T PRK10689 908 HQ--AYAWLLTPH 918 (1147)
T ss_pred Cc--eEEEEEeCC
Confidence 65 445544433
No 54
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=3.2e-23 Score=203.67 Aligned_cols=386 Identities=18% Similarity=0.205 Sum_probs=236.1
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCC--CcEEEeC-ccc
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRC--RPVIIAP-RSM 144 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~--~~LIv~P-~~l 144 (635)
..++|-|...+-|++..... ..+..++..+++.++|+|||+.-..-|...+...+.. +++||+| .-|
T Consensus 158 s~~FPVQ~aVlp~ll~~~~~----------p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L 227 (620)
T KOG0350|consen 158 SRLFPVQYAVLPSLLEEIRS----------PPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTREL 227 (620)
T ss_pred ccccchHHHHHHHHHHhhcC----------CCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHH
Confidence 46999999999999775431 3445577899999999999976555555555544443 4599999 677
Q ss_pred hHHHHHHHHHhcCC--CcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcc
Q 006698 145 LLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222 (635)
Q Consensus 145 ~~qW~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~ 222 (635)
..|-.++|.+|.++ +.|..+.+......+.... .+. ......||+|+|+..+..+.++
T Consensus 228 ~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL----~~~----------------~~~~~~DIlVaTPGRLVDHl~~ 287 (620)
T KOG0350|consen 228 ALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQL----ASD----------------PPECRIDILVATPGRLVDHLNN 287 (620)
T ss_pred HHHHHHHHHHhccCCceEEEecccccchHHHHHHH----hcC----------------CCccccceEEcCchHHHHhccC
Confidence 79999999999765 3444444432222211111 110 0112458999999998887764
Q ss_pred hhhhhhhccCCCEEEEeCCCcCCCcc--cHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhh
Q 006698 223 DELSGILLDLPGLFVFDEGHTPRNDD--TCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300 (635)
Q Consensus 223 ~~~~~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~ 300 (635)
.+.+......++|||||.++.+.. .++...+..++...++.+++- +..+..-..|..+..... .++
T Consensus 288 --~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~n--------ii~~~~~~~pt~~~e~~t--~~~ 355 (620)
T KOG0350|consen 288 --TKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDN--------IIRQRQAPQPTVLSELLT--KLG 355 (620)
T ss_pred --CCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhh--------hhhhcccCCchhhHHHHh--hcC
Confidence 333444455789999999987643 334444444444444433222 111111111222211111 000
Q ss_pred hhhh---HhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhh
Q 006698 301 REIS---KAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVK 377 (635)
Q Consensus 301 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~ 377 (635)
..+. .-.+.... ..++..+..|.-.+.............-.+|+.
T Consensus 356 ~~~~~l~kL~~satL--------sqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~------------------------ 403 (620)
T KOG0350|consen 356 KLYPPLWKLVFSATL--------SQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSS------------------------ 403 (620)
T ss_pred CcCchhHhhhcchhh--------hcChHHHhhhhcCCCceEEeecccceeeecChh------------------------
Confidence 0000 00000000 022222222221111110000000000011111
Q ss_pred hHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHH
Q 006698 378 SFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLR 457 (635)
Q Consensus 378 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~ 457 (635)
+.......+..-|...+..++......++|+|+++......+...|.
T Consensus 404 ---------------------------------l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~ 450 (620)
T KOG0350|consen 404 ---------------------------------LSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLK 450 (620)
T ss_pred ---------------------------------hhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHH
Confidence 11111111223356667788888899999999999999999999998
Q ss_pred hhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhh
Q 006698 458 HRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYR 537 (635)
Q Consensus 458 ~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R 537 (635)
-.|+.. ...+..++|+.+.+.|.+.+.+|+. |+++||| ++++++.|+|+.+.+.||+||||-....|.+|+||..|
T Consensus 451 v~~~~~-~~~~s~~t~~l~~k~r~k~l~~f~~--g~i~vLI-cSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTAR 526 (620)
T KOG0350|consen 451 VEFCSD-NFKVSEFTGQLNGKRRYKMLEKFAK--GDINVLI-CSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTAR 526 (620)
T ss_pred HHhccc-cchhhhhhhhhhHHHHHHHHHHHhc--CCceEEE-ehhhhhcCCcccccceEeecCCCchhhHHHHhhccccc
Confidence 554432 5667779999999999999999998 6688888 69999999999999999999999999999999999999
Q ss_pred cCCcceEEEEEEEeCCChHHHHHHHHHHhhh
Q 006698 538 LGQKRVVHVYHLITSETLEWDKLRRQARKVW 568 (635)
Q Consensus 538 ~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~ 568 (635)
.||. -++|.++... |++.+-.+..|.+
T Consensus 527 Agq~--G~a~tll~~~--~~r~F~klL~~~~ 553 (620)
T KOG0350|consen 527 AGQD--GYAITLLDKH--EKRLFSKLLKKTN 553 (620)
T ss_pred ccCC--ceEEEeeccc--cchHHHHHHHHhc
Confidence 9984 5667777654 4566666655543
No 55
>PRK01172 ski2-like helicase; Provisional
Probab=99.90 E-value=9.9e-22 Score=218.82 Aligned_cols=317 Identities=19% Similarity=0.213 Sum_probs=193.6
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLT 147 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~q 147 (635)
+|+|+|.+++..+.. +++++++.++|+|||+++...+...... .+++++|+| .+|..|
T Consensus 22 ~l~~~Q~~ai~~l~~-------------------~~nvlv~apTGSGKTl~a~lail~~l~~--~~k~v~i~P~raLa~q 80 (674)
T PRK01172 22 ELYDHQRMAIEQLRK-------------------GENVIVSVPTAAGKTLIAYSAIYETFLA--GLKSIYIVPLRSLAME 80 (674)
T ss_pred CCCHHHHHHHHHHhc-------------------CCcEEEECCCCchHHHHHHHHHHHHHHh--CCcEEEEechHHHHHH
Confidence 599999999987632 5689999999999999887666554443 357899999 788899
Q ss_pred HHHHHHHhcC-CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhh
Q 006698 148 WEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELS 226 (635)
Q Consensus 148 W~~E~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~ 226 (635)
+.+++.++.. +.++....+.... .. .+....+++++|++.+..+.....
T Consensus 81 ~~~~~~~l~~~g~~v~~~~G~~~~---~~-------------------------~~~~~~dIiv~Tpek~~~l~~~~~-- 130 (674)
T PRK01172 81 KYEELSRLRSLGMRVKISIGDYDD---PP-------------------------DFIKRYDVVILTSEKADSLIHHDP-- 130 (674)
T ss_pred HHHHHHHHhhcCCeEEEEeCCCCC---Ch-------------------------hhhccCCEEEECHHHHHHHHhCCh--
Confidence 9999987632 2333222221100 00 012356899999998776654311
Q ss_pred hhhccCCCEEEEeCCCcCCCcc-cHHHHHH----Hhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhh
Q 006698 227 GILLDLPGLFVFDEGHTPRNDD-TCMFKAL----SRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300 (635)
Q Consensus 227 ~~~~~~~~~vIvDEaH~~kn~~-s~~~~~l----~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~ 300 (635)
.....+++||+||+|.+.... ......+ +.+ ...+.++||||+- +..++. .+++...+.
T Consensus 131 -~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~--n~~~la---~wl~~~~~~--------- 195 (674)
T PRK01172 131 -YIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVS--NANELA---QWLNASLIK--------- 195 (674)
T ss_pred -hHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccC--CHHHHH---HHhCCCccC---------
Confidence 123457999999999986432 1122222 222 3457899999972 233332 122111000
Q ss_pred hhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHH
Q 006698 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFV 380 (635)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~ 380 (635)
... ...|- ...+.... ..+
T Consensus 196 -------------------------------~~~-------------r~vpl-~~~i~~~~------~~~---------- 214 (674)
T PRK01172 196 -------------------------------SNF-------------RPVPL-KLGILYRK------RLI---------- 214 (674)
T ss_pred -------------------------------CCC-------------CCCCe-EEEEEecC------eee----------
Confidence 000 00110 00111000 000
Q ss_pred HHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhh
Q 006698 381 ELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460 (635)
Q Consensus 381 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~ 460 (635)
. . .. . . ........+.+.+. .+.++|||++.+...+.+...|...+
T Consensus 215 ---------~-~-----~~-----~--~----------~~~~~~~~i~~~~~--~~~~vLVF~~sr~~~~~~a~~L~~~~ 260 (674)
T PRK01172 215 ---------L-D-----GY-----E--R----------SQVDINSLIKETVN--DGGQVLVFVSSRKNAEDYAEMLIQHF 260 (674)
T ss_pred ---------e-c-----cc-----c--c----------ccccHHHHHHHHHh--CCCcEEEEeccHHHHHHHHHHHHHhh
Confidence 0 0 00 0 0 00000111222222 57899999999998888888776643
Q ss_pred cccC--------------------CceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeC
Q 006698 461 NWRE--------------------GQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLD 520 (635)
Q Consensus 461 ~~~~--------------------g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d 520 (635)
.... ...+..+||+++.++|..+.+.|++ |.++|++ +|++++.|+|+++ .+||++|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~--g~i~VLv-aT~~la~Gvnipa-~~VII~~ 336 (674)
T PRK01172 261 PEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRN--RYIKVIV-ATPTLAAGVNLPA-RLVIVRD 336 (674)
T ss_pred hhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHc--CCCeEEE-ecchhhccCCCcc-eEEEEcC
Confidence 2110 1246778999999999999999997 6688877 6999999999995 6777766
Q ss_pred C---------CCChhhHHhhhhhhhhcCCcceEEEEEEE
Q 006698 521 V---------VWNPFVERQAISRAYRLGQKRVVHVYHLI 550 (635)
Q Consensus 521 ~---------~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li 550 (635)
. ++++..+.|++||++|.|.......+-++
T Consensus 337 ~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~ 375 (674)
T PRK01172 337 ITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYA 375 (674)
T ss_pred ceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEe
Confidence 4 45778899999999999976654443343
No 56
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.2e-23 Score=191.96 Aligned_cols=318 Identities=18% Similarity=0.190 Sum_probs=216.8
Q ss_pred ccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHH-HHHHHHHHHhCCCCCcEEEeC-ccchHH
Q 006698 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT-LVFLQAYMKLHPRCRPVIIAP-RSMLLT 147 (635)
Q Consensus 70 L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~a-i~~i~~~~~~~~~~~~LIv~P-~~l~~q 147 (635)
+-.-|..|+..+++ ++.+|.-...|+|||.+- |+++...--..+.--+||+.| ..|-.|
T Consensus 50 PS~IQqrAi~~Ilk-------------------GrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Q 110 (400)
T KOG0328|consen 50 PSAIQQRAIPQILK-------------------GRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQ 110 (400)
T ss_pred chHHHhhhhhhhhc-------------------ccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHH
Confidence 34468888877754 789999999999999542 344432211122234699999 556677
Q ss_pred HHHHHHHhcCCCcccccCCC--CCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhh
Q 006698 148 WEEEFKKWGIDIPFYNLNKP--ELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225 (635)
Q Consensus 148 W~~E~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~ 225 (635)
-++-+...+..+++...... .-.|.+.+.. ..+..++.-|+..+-.+...
T Consensus 111 i~~vi~alg~~mnvq~hacigg~n~gedikkl-------------------------d~G~hvVsGtPGrv~dmikr--- 162 (400)
T KOG0328|consen 111 IQKVILALGDYMNVQCHACIGGKNLGEDIKKL-------------------------DYGQHVVSGTPGRVLDMIKR--- 162 (400)
T ss_pred HHHHHHHhcccccceEEEEecCCccchhhhhh-------------------------cccceEeeCCCchHHHHHHh---
Confidence 77777776655544443332 2122111110 12456777777766555432
Q ss_pred hhhhccCCCEEEEeCCCcCCCc--ccHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhh
Q 006698 226 SGILLDLPGLFVFDEGHTPRND--DTCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302 (635)
Q Consensus 226 ~~~~~~~~~~vIvDEaH~~kn~--~s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~ 302 (635)
..+.-....++|+|||..+.|. +.+.+...+.| +...++++|||- +.|+..+.++..++..
T Consensus 163 ~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATl----p~eilemt~kfmtdpv------------ 226 (400)
T KOG0328|consen 163 RSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATL----PHEILEMTEKFMTDPV------------ 226 (400)
T ss_pred ccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccC----cHHHHHHHHHhcCCce------------
Confidence 3344455789999999998654 57888888888 478899999996 4555444333322110
Q ss_pred hhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEE-EeCCcHH-HHHHHHHHhhhhhHH
Q 006698 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV-ILQPDEF-QKRLCKAVEGVKSFV 380 (635)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v-~~~~s~~-q~~~y~~~~~~~~~~ 380 (635)
...+ .-+++.+ -+++|=+
T Consensus 227 ----------------------------------------------------rilvkrdeltlEgIKqf~v~-------- 246 (400)
T KOG0328|consen 227 ----------------------------------------------------RILVKRDELTLEGIKQFFVA-------- 246 (400)
T ss_pred ----------------------------------------------------eEEEecCCCchhhhhhheee--------
Confidence 0000 0001110 0000000
Q ss_pred HHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhh
Q 006698 381 ELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460 (635)
Q Consensus 381 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~ 460 (635)
......|.+.|.++-+...-...+|||+.+..+++|.+.+++.
T Consensus 247 ------------------------------------ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~- 289 (400)
T KOG0328|consen 247 ------------------------------------VEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA- 289 (400)
T ss_pred ------------------------------------echhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhh-
Confidence 0112347777777777666678999999999999999999997
Q ss_pred cccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCC
Q 006698 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQ 540 (635)
Q Consensus 461 ~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ 540 (635)
.+.+..+||.+++++|.++++.|+. ++.+||| +|++-+.|+|+|..+.||+||+|-|+..|++||||.+|.|.
T Consensus 290 ----nftVssmHGDm~qkERd~im~dFRs--g~SrvLi-tTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGR 362 (400)
T KOG0328|consen 290 ----NFTVSSMHGDMEQKERDKIMNDFRS--GKSRVLI-TTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGR 362 (400)
T ss_pred ----CceeeeccCCcchhHHHHHHHHhhc--CCceEEE-EechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCC
Confidence 8999999999999999999999998 5567777 79999999999999999999999999999999999999995
Q ss_pred cceEEEEEEEeCCChH
Q 006698 541 KRVVHVYHLITSETLE 556 (635)
Q Consensus 541 ~~~V~vy~li~~~tiE 556 (635)
+ -.+.+|+..+.++
T Consensus 363 k--GvainFVk~~d~~ 376 (400)
T KOG0328|consen 363 K--GVAINFVKSDDLR 376 (400)
T ss_pred c--ceEEEEecHHHHH
Confidence 4 4456777765443
No 57
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.90 E-value=2.4e-23 Score=217.97 Aligned_cols=360 Identities=17% Similarity=0.137 Sum_probs=227.9
Q ss_pred HHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccc
Q 006698 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSM 144 (635)
Q Consensus 66 l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l 144 (635)
-...+|+||..|++.+.+++..| .+.++|++.+|+|||.+|++++..+++.+..+++|+++- ++|
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g--------------~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~L 227 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKG--------------QNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNAL 227 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcC--------------CceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHH
Confidence 45579999999999999998865 667999999999999999999999999999999999999 899
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcch-
Q 006698 145 LLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD- 223 (635)
Q Consensus 145 ~~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~- 223 (635)
+.|=..++..|.|+......-.. .. -...+.|.+.||.++.......
T Consensus 228 v~QA~~af~~~~P~~~~~n~i~~----~~----------------------------~~~s~~i~lsTyqt~~~~~~~~~ 275 (875)
T COG4096 228 VDQAYGAFEDFLPFGTKMNKIED----KK----------------------------GDTSSEIYLSTYQTMTGRIEQKE 275 (875)
T ss_pred HHHHHHHHHHhCCCccceeeeec----cc----------------------------CCcceeEEEeehHHHHhhhhccc
Confidence 99999999999887543322110 00 0124589999999988766553
Q ss_pred -hhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhh
Q 006698 224 -ELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302 (635)
Q Consensus 224 -~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~ 302 (635)
....+-.+.||+||+||||+- ....++.+...-...+++|||||-..--.+-+.+++ =.|.+.-+
T Consensus 276 ~~~~~f~~g~FDlIvIDEaHRg---i~~~~~~I~dYFdA~~~gLTATP~~~~d~~T~~~F~-g~Pt~~Ys---------- 341 (875)
T COG4096 276 DEYRRFGPGFFDLIVIDEAHRG---IYSEWSSILDYFDAATQGLTATPKETIDRSTYGFFN-GEPTYAYS---------- 341 (875)
T ss_pred cccccCCCCceeEEEechhhhh---HHhhhHHHHHHHHHHHHhhccCcccccccccccccC-CCcceeec----------
Confidence 334455566999999999983 223444555555556778899994411111111111 01111000
Q ss_pred hhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCc-eEEEEE--------eCCcHHHHHHHHHH
Q 006698 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGL-RHSVVI--------LQPDEFQKRLCKAV 373 (635)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~-~~~~v~--------~~~s~~q~~~y~~~ 373 (635)
|...+..-+ -.|.. ...... -.+++ +.+.+...
T Consensus 342 ---------------------------leeAV~DGf----------Lvpy~vi~i~~~~~~~G~~~~~~se-rek~~g~~ 383 (875)
T COG4096 342 ---------------------------LEEAVEDGF----------LVPYKVIRIDTDFDLDGWKPDAGSE-REKLQGEA 383 (875)
T ss_pred ---------------------------HHHHhhccc----------cCCCCceEEeeeccccCcCcCccch-hhhhhccc
Confidence 111111000 01110 000011 11111 11111100
Q ss_pred hhhhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc----CCCeEEEEcCChhHH
Q 006698 374 EGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS----TNEKVLVFSQYIEPL 449 (635)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~----~~~kviIFs~~~~~~ 449 (635)
. .+ ....++..+.+. ..........-...+.+.+... .-.|.||||...+.+
T Consensus 384 i-----------------~~---dd~~~~~~d~dr----~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHA 439 (875)
T COG4096 384 I-----------------DE---DDQNFEARDFDR----TLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHA 439 (875)
T ss_pred c-----------------Cc---ccccccccccch----hccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHH
Confidence 0 00 000000000000 0000011112223344444441 246999999999999
Q ss_pred HHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHH
Q 006698 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVER 529 (635)
Q Consensus 450 ~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~ 529 (635)
+.|...|...|...+|--+..|+|... +-+..|+.|-....-.+ +.++.+.+.+|+|.+.|..+||+-..-+-..+.
T Consensus 440 e~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~ke~~P~-IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~ 516 (875)
T COG4096 440 ERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFIDKEKYPR-IAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFK 516 (875)
T ss_pred HHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHhcCCCCc-eEEehhhhhcCCCchheeeeeehhhhhhHHHHH
Confidence 999999999988766777889999864 45667888876333344 555899999999999999999999999999999
Q ss_pred hhhhhhhhc-------CCcc-eEEEEEEE
Q 006698 530 QAISRAYRL-------GQKR-VVHVYHLI 550 (635)
Q Consensus 530 Qa~gR~~R~-------GQ~~-~V~vy~li 550 (635)
|.+||.-|+ ||.| ...|+-++
T Consensus 517 QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 517 QMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred HHhcCccccCccccCccccceeEEEEEhh
Confidence 999999996 4556 66666665
No 58
>PRK00254 ski2-like helicase; Provisional
Probab=99.90 E-value=9.3e-22 Score=219.91 Aligned_cols=326 Identities=17% Similarity=0.159 Sum_probs=196.7
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHH-HHHHHHhCCCCCcEEEeC-ccch
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVF-LQAYMKLHPRCRPVIIAP-RSML 145 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~-i~~~~~~~~~~~~LIv~P-~~l~ 145 (635)
.+|+|+|.+++.-.+. .+++++++.++|+|||+.+... +..+.. ..+++|+|+| .+|+
T Consensus 22 ~~l~~~Q~~ai~~~~~------------------~g~nvlv~apTGsGKT~~~~l~il~~l~~--~~~~~l~l~P~~aLa 81 (720)
T PRK00254 22 EELYPPQAEALKSGVL------------------EGKNLVLAIPTASGKTLVAEIVMVNKLLR--EGGKAVYLVPLKALA 81 (720)
T ss_pred CCCCHHHHHHHHHHHh------------------CCCcEEEECCCCcHHHHHHHHHHHHHHHh--cCCeEEEEeChHHHH
Confidence 3699999999974322 1679999999999999998544 433332 3457899999 8888
Q ss_pred HHHHHHHHHhcC-CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchh
Q 006698 146 LTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224 (635)
Q Consensus 146 ~qW~~E~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~ 224 (635)
.|+.+++.+|.. ++++..+++..... ..|....+|+|+|++.+..+.+...
T Consensus 82 ~q~~~~~~~~~~~g~~v~~~~Gd~~~~----------------------------~~~~~~~~IiV~Tpe~~~~ll~~~~ 133 (720)
T PRK00254 82 EEKYREFKDWEKLGLRVAMTTGDYDST----------------------------DEWLGKYDIIIATAEKFDSLLRHGS 133 (720)
T ss_pred HHHHHHHHHHhhcCCEEEEEeCCCCCc----------------------------hhhhccCCEEEEcHHHHHHHHhCCc
Confidence 999999887632 33444343321100 0123467899999998877654311
Q ss_pred hhhhhccCCCEEEEeCCCcCCCc--ccHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhh
Q 006698 225 LSGILLDLPGLFVFDEGHTPRND--DTCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301 (635)
Q Consensus 225 ~~~~~~~~~~~vIvDEaH~~kn~--~s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~ 301 (635)
......++||+||+|.+... .......+..+ ...+.++||||+- ++.++.. ++....+..
T Consensus 134 ---~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~--n~~~la~---wl~~~~~~~--------- 196 (720)
T PRK00254 134 ---SWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVG--NAEELAE---WLNAELVVS--------- 196 (720)
T ss_pred ---hhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCC--CHHHHHH---HhCCccccC---------
Confidence 12245799999999998643 33344444444 4567899999973 2455432 221110000
Q ss_pred hhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHHH
Q 006698 302 EISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVE 381 (635)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~~ 381 (635)
..+ ..|-.. .+. ...
T Consensus 197 -------------------------------~~r-------------pv~l~~-~~~-~~~------------------- 211 (720)
T PRK00254 197 -------------------------------DWR-------------PVKLRK-GVF-YQG------------------- 211 (720)
T ss_pred -------------------------------CCC-------------CCccee-eEe-cCC-------------------
Confidence 000 000000 000 000
Q ss_pred HHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhc
Q 006698 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFN 461 (635)
Q Consensus 382 ~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~ 461 (635)
...... . ..... .......+.+.+. .+.++|||++.+..++.+...|.....
T Consensus 212 ------------~~~~~~--------~-~~~~~-----~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~ 263 (720)
T PRK00254 212 ------------FLFWED--------G-KIERF-----PNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIK 263 (720)
T ss_pred ------------eeeccC--------c-chhcc-----hHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHH
Confidence 000000 0 00000 0001122333333 567899999988777655544432110
Q ss_pred c----------------------------cCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccC
Q 006698 462 W----------------------------REGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513 (635)
Q Consensus 462 ~----------------------------~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a 513 (635)
. .-+..+...||+++.++|..+.+.|++ |.++|++ +|.+++.|+|+++.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~--G~i~VLv-aT~tLa~Gvnipa~ 340 (720)
T PRK00254 264 RFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFRE--GLIKVIT-ATPTLSAGINLPAF 340 (720)
T ss_pred HhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHC--CCCeEEE-eCcHHhhhcCCCce
Confidence 0 002357889999999999999999997 6688877 69999999999987
Q ss_pred CeEEE-------eCCCC-ChhhHHhhhhhhhhcCCcceEEEEEEEeCCC
Q 006698 514 SRVVL-------LDVVW-NPFVERQAISRAYRLGQKRVVHVYHLITSET 554 (635)
Q Consensus 514 ~~vi~-------~d~~w-np~~~~Qa~gR~~R~GQ~~~V~vy~li~~~t 554 (635)
+.||. ++.+. ....+.|++||++|.|....-.++.++..+.
T Consensus 341 ~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 341 RVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred EEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 77773 23322 3457899999999999777666666665543
No 59
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.90 E-value=3e-21 Score=199.70 Aligned_cols=135 Identities=15% Similarity=0.224 Sum_probs=102.2
Q ss_pred hHHHHHHHHHhc-CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHH----HHHhcCCCCCcEEE
Q 006698 423 KTRFLLILLELS-TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSS----INVLNDPSSQARIM 497 (635)
Q Consensus 423 K~~~l~~~l~~~-~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~----i~~F~~~~~~~~vl 497 (635)
|...+..++... .+.++|||++....++.+.+.|.+... +..+..++|+++..+|.+. ++.|.+ ++.+|+
T Consensus 208 ~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~---~~~~~~~h~~~~~~~r~~~~~~~~~~f~~--~~~~il 282 (358)
T TIGR01587 208 EISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAP---EEEIMLLHSRFTEKDRAKKEAELLEEMKK--NEKFVI 282 (358)
T ss_pred CHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcC---CCeEEEEECCCCHHHHHHHHHHHHHHhcC--CCCeEE
Confidence 444455555544 678999999999999999999988621 2368999999999999764 889987 556666
Q ss_pred EEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcc----eEEEEEEEeCC---ChHHHHHHHHHHh
Q 006698 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKR----VVHVYHLITSE---TLEWDKLRRQARK 566 (635)
Q Consensus 498 l~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~----~V~vy~li~~~---tiEe~i~~~~~~K 566 (635)
| +|++++.|+|+. ++.||.++.| +..+.||+||++|.|... .|+|+.....+ ..+..++++-.++
T Consensus 283 v-aT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~~~ 354 (358)
T TIGR01587 283 V-ATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTIQK 354 (358)
T ss_pred E-ECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHHHH
Confidence 6 799999999995 8888888765 889999999999999764 45665555444 4455555555444
No 60
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.89 E-value=2.4e-21 Score=208.97 Aligned_cols=341 Identities=16% Similarity=0.086 Sum_probs=225.9
Q ss_pred HhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHH-HHHHHHhCCCC-----CcEEEe
Q 006698 67 RKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVF-LQAYMKLHPRC-----RPVIIA 140 (635)
Q Consensus 67 ~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~-i~~~~~~~~~~-----~~LIv~ 140 (635)
...|.|+|+.|+..+.+ +.++++..+||+|||..|+.- +..+...++.. .+|.|.
T Consensus 20 ~~~~t~~Q~~a~~~i~~-------------------G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIs 80 (814)
T COG1201 20 FTSLTPPQRYAIPEIHS-------------------GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYIS 80 (814)
T ss_pred cCCCCHHHHHHHHHHhC-------------------CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeC
Confidence 35799999999988853 789999999999999999754 44455553111 249999
Q ss_pred C-ccchHHHHHHHHHhcC--CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHH
Q 006698 141 P-RSMLLTWEEEFKKWGI--DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFE 217 (635)
Q Consensus 141 P-~~l~~qW~~E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~ 217 (635)
| ++|-..-.+.+..|.. ++++-+-+| ...... +...-.+.++|+|||++++.
T Consensus 81 PLkALn~Di~~rL~~~~~~~G~~v~vRhG-----DT~~~e--------------------r~r~~~~PPdILiTTPEsL~ 135 (814)
T COG1201 81 PLKALNNDIRRRLEEPLRELGIEVAVRHG-----DTPQSE--------------------KQKMLKNPPHILITTPESLA 135 (814)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCccceecC-----CCChHH--------------------hhhccCCCCcEEEeChhHHH
Confidence 9 6776666677766642 344433332 222111 11122468899999999999
Q ss_pred HhhcchhhhhhhccCCCEEEEeCCCcCCCc--ccHHHHHHHhc----ccCcEEEEecccCCCChhhHHHHHHhhhhhhhh
Q 006698 218 KLVSGDELSGILLDLPGLFVFDEGHTPRND--DTCMFKALSRI----KTRRRIILSGTPFQNNFQELENTLSLVRQEFGE 291 (635)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~--~s~~~~~l~~l----~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~ 291 (635)
-+.........+. ....|||||.|.+.+. +++++-.+.+| ..-.|++||||-- +++++ ..||.+.-
T Consensus 136 lll~~~~~r~~l~-~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~--~~~~v---arfL~g~~-- 207 (814)
T COG1201 136 ILLNSPKFRELLR-DVRYVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATVG--PPEEV---AKFLVGFG-- 207 (814)
T ss_pred HHhcCHHHHHHhc-CCcEEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhccC--CHHHH---HHHhcCCC--
Confidence 8887755554433 4588999999999764 56777777766 3467999999942 23322 22321110
Q ss_pred hHHHHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHH
Q 006698 292 VLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCK 371 (635)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~ 371 (635)
. .-..+......+.+..+.++-......
T Consensus 208 -------------------------------~------------------~~~Iv~~~~~k~~~i~v~~p~~~~~~~--- 235 (814)
T COG1201 208 -------------------------------D------------------PCEIVDVSAAKKLEIKVISPVEDLIYD--- 235 (814)
T ss_pred -------------------------------C------------------ceEEEEcccCCcceEEEEecCCccccc---
Confidence 0 001111111122222221111100000
Q ss_pred HHhhhhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHH
Q 006698 372 AVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTL 451 (635)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~ 451 (635)
+.....-...+.++++. ...+|||+|.+.+.+.
T Consensus 236 ---------------------------------------------~~~~~~~~~~i~~~v~~--~~ttLIF~NTR~~aE~ 268 (814)
T COG1201 236 ---------------------------------------------EELWAALYERIAELVKK--HRTTLIFTNTRSGAER 268 (814)
T ss_pred ---------------------------------------------cchhHHHHHHHHHHHhh--cCcEEEEEeChHHHHH
Confidence 11112234445556653 4489999999999999
Q ss_pred HHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhh
Q 006698 452 IMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531 (635)
Q Consensus 452 l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa 531 (635)
+...|.+.+ +..+..-||+.+.++|..+.++|++ |+.++++ ||+++..|||.-..+.||+|..|-..+...||
T Consensus 269 l~~~L~~~~----~~~i~~HHgSlSre~R~~vE~~lk~--G~lravV-~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQR 341 (814)
T COG1201 269 LAFRLKKLG----PDIIEVHHGSLSRELRLEVEERLKE--GELKAVV-ATSSLELGIDIGDIDLVIQLGSPKSVNRFLQR 341 (814)
T ss_pred HHHHHHHhc----CCceeeecccccHHHHHHHHHHHhc--CCceEEE-EccchhhccccCCceEEEEeCCcHHHHHHhHh
Confidence 999999984 4889999999999999999999998 6688888 69999999999999999999999999999999
Q ss_pred hhhh-hhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhh
Q 006698 532 ISRA-YRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569 (635)
Q Consensus 532 ~gR~-~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~ 569 (635)
+||+ ||+|.... ..+++.+ .++.+-....-+...
T Consensus 342 iGRsgHr~~~~Sk---g~ii~~~-r~dllE~~vi~~~a~ 376 (814)
T COG1201 342 IGRAGHRLGEVSK---GIIIAED-RDDLLECLVLADLAL 376 (814)
T ss_pred ccccccccCCccc---EEEEecC-HHHHHHHHHHHHHHH
Confidence 9999 55664433 3344555 455444444444333
No 61
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.89 E-value=1.8e-21 Score=192.55 Aligned_cols=347 Identities=17% Similarity=0.200 Sum_probs=216.5
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCC----------CCCcE
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP----------RCRPV 137 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~----------~~~~L 137 (635)
..+-|-|+.++--+++ .+..|...++|+|||..-+.-+..+....| ....+
T Consensus 266 ~eptpIqR~aipl~lQ-------------------~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyai 326 (673)
T KOG0333|consen 266 KEPTPIQRQAIPLGLQ-------------------NRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAI 326 (673)
T ss_pred CCCchHHHhhccchhc-------------------cCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceee
Confidence 3577889988876544 678999999999999444333333333322 23459
Q ss_pred EEeC-ccchHHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHH
Q 006698 138 IIAP-RSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLF 216 (635)
Q Consensus 138 Iv~P-~~l~~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~ 216 (635)
|++| .-|..|-+.|-.+|+-.+-+.++........+. ..++....+.++|.|+..+
T Consensus 327 ilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EE-----------------------q~fqls~gceiviatPgrL 383 (673)
T KOG0333|consen 327 ILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEE-----------------------QGFQLSMGCEIVIATPGRL 383 (673)
T ss_pred eechHHHHHHHHHHHHHHhcccccceEEEEecccchhh-----------------------hhhhhhccceeeecCchHH
Confidence 9999 667788889988886443322222211111111 1112246789999999876
Q ss_pred HHhhcchhhhhhhccCCCEEEEeCCCcCCCc--ccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHH
Q 006698 217 EKLVSGDELSGILLDLPGLFVFDEGHTPRND--DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294 (635)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~--~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~ 294 (635)
..-+.. ..+......+||+|||.++-.. .-...+.+..++. .|-- |+.
T Consensus 384 id~Len---r~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPs-----------sn~k-----------~~t----- 433 (673)
T KOG0333|consen 384 IDSLEN---RYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPS-----------SNAK-----------PDT----- 433 (673)
T ss_pred HHHHHH---HHHHhccCceEeccchhhhhcccccHHHHHHHHhCCc-----------cccC-----------CCc-----
Confidence 654422 2345566789999999987442 2223333333211 1100 000
Q ss_pred HHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHh
Q 006698 295 TVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVE 374 (635)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~ 374 (635)
...+....+++.+..- + -. .+..+....|+|.-..+.+.+.
T Consensus 434 ---------------------------de~~~~~~~~~~~~~~-----k-~y------rqT~mftatm~p~verlar~yl 474 (673)
T KOG0333|consen 434 ---------------------------DEKEGEERVRKNFSSS-----K-KY------RQTVMFTATMPPAVERLARSYL 474 (673)
T ss_pred ---------------------------cchhhHHHHHhhcccc-----c-ce------eEEEEEecCCChHHHHHHHHHh
Confidence 0000111111111100 0 00 0233344555554433333221
Q ss_pred hhhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHH
Q 006698 375 GVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIME 454 (635)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~ 454 (635)
. .|..+.....- .....+++.......+.|...|.++|+......+|||.+....++.|++
T Consensus 475 r----------------~pv~vtig~~g---k~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk 535 (673)
T KOG0333|consen 475 R----------------RPVVVTIGSAG---KPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAK 535 (673)
T ss_pred h----------------CCeEEEeccCC---CCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHH
Confidence 1 11111110000 0012233333344456789999999998878899999999999999999
Q ss_pred HHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhh
Q 006698 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISR 534 (635)
Q Consensus 455 ~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR 534 (635)
.|.+. |+.++++||+.++++|+.+++.|+++. ..||+ +|+++|.|||+++.++||+||..-+...|.+||||
T Consensus 536 ~LeK~-----g~~~~tlHg~k~qeQRe~aL~~fr~~t--~dIlV-aTDvAgRGIDIpnVSlVinydmaksieDYtHRIGR 607 (673)
T KOG0333|consen 536 ILEKA-----GYKVTTLHGGKSQEQRENALADFREGT--GDILV-ATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGR 607 (673)
T ss_pred HHhhc-----cceEEEeeCCccHHHHHHHHHHHHhcC--CCEEE-EecccccCCCCCccceeeecchhhhHHHHHHHhcc
Confidence 99998 999999999999999999999999844 44566 69999999999999999999999999999999999
Q ss_pred hhhcCCcceEEEEEEEeCCC
Q 006698 535 AYRLGQKRVVHVYHLITSET 554 (635)
Q Consensus 535 ~~R~GQ~~~V~vy~li~~~t 554 (635)
.+|.|+.-. +..|+++..
T Consensus 608 TgRAGk~Gt--aiSflt~~d 625 (673)
T KOG0333|consen 608 TGRAGKSGT--AISFLTPAD 625 (673)
T ss_pred ccccccCce--eEEEeccch
Confidence 999997543 344666543
No 62
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.88 E-value=3.5e-21 Score=211.51 Aligned_cols=378 Identities=15% Similarity=0.092 Sum_probs=206.0
Q ss_pred HhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccch
Q 006698 67 RKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSML 145 (635)
Q Consensus 67 ~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~ 145 (635)
+.-.|+||.+||+.+.+++..+- ...+.++|++.+++|+|||++++.++..+++.....++||||| ..|.
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~---------~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~ 306 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKT---------WGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELD 306 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcc---------cCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHH
Confidence 34589999999999988865420 1123568999999999999999999988777666778899999 7899
Q ss_pred HHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhh
Q 006698 146 LTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225 (635)
Q Consensus 146 ~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~ 225 (635)
.||.++|..+.++..... +. ..... ... ......|+++|.++|.+.... ..
T Consensus 307 ~Q~~~~f~~~~~~~~~~~-------~s-~~~L~---~~l-----------------~~~~~~iivtTiQk~~~~~~~-~~ 357 (667)
T TIGR00348 307 YQLMKEFQSLQKDCAERI-------ES-IAELK---RLL-----------------EKDDGGIIITTIQKFDKKLKE-EE 357 (667)
T ss_pred HHHHHHHHhhCCCCCccc-------CC-HHHHH---HHH-----------------hCCCCCEEEEEhHHhhhhHhh-hh
Confidence 999999999864311000 00 00000 000 012467999999999763221 11
Q ss_pred hhhhccCC-CEEEEeCCCcCCCcccHHHHHHH-hcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhhh
Q 006698 226 SGILLDLP-GLFVFDEGHTPRNDDTCMFKALS-RIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREI 303 (635)
Q Consensus 226 ~~~~~~~~-~~vIvDEaH~~kn~~s~~~~~l~-~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~~ 303 (635)
..+..... .+||+||||+... ....+.++ .++...+++|||||....-.+-+..+... |+..+
T Consensus 358 ~~~~~~~~~~lvIvDEaHrs~~--~~~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~-------------fg~~i 422 (667)
T TIGR00348 358 EKFPVDRKEVVVIFDEAHRSQY--GELAKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYV-------------FGRYL 422 (667)
T ss_pred hccCCCCCCEEEEEEcCccccc--hHHHHHHHhhCCCCcEEEEeCCCcccccccccccccCC-------------CCCeE
Confidence 11111122 3899999998642 22344553 45778999999999753211111111000 00000
Q ss_pred hHhhhhhhhhhhhhccCcCcHHHHHHHHH-hhcchhhhcccccccccCCCceEEEEEeCCcHHH-HHHHHHHhhh----h
Q 006698 304 SKAKHASLISSIGRCANHRDDEKLKELKE-KIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQ-KRLCKAVEGV----K 377 (635)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q-~~~y~~~~~~----~ 377 (635)
.... ....+.. .+.|+.. .+.. +...++... ...++..... .
T Consensus 423 ~~Y~------------------~~~AI~dG~~~~i~Y----------~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~ 470 (667)
T TIGR00348 423 HRYF------------------ITDAIRDGLTVKIDY----------EDRL----PEDHLDRKKLDAFFDEIFELLPERI 470 (667)
T ss_pred EEee------------------HHHHhhcCCeeeEEE----------Eecc----hhhccChHHHHHHHHHHHHhhhccc
Confidence 0000 0000000 1111100 0000 000011100 0001110000 0
Q ss_pred hHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccC-ccccchHHHHHHHHHhc---CCCeEEEEcCChhHHHHHH
Q 006698 378 SFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLD-PEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIM 453 (635)
Q Consensus 378 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~-~~~s~K~~~l~~~l~~~---~~~kviIFs~~~~~~~~l~ 453 (635)
.... ...+... .......... .........+.+-.... .+.|.+|||.++..+..+.
T Consensus 471 ~~~~-~~~l~~~------------------~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~ 531 (667)
T TIGR00348 471 REIT-KESLKEK------------------LQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEK 531 (667)
T ss_pred cHHH-HHHHHHH------------------HHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHH
Confidence 0000 0000000 0000000000 00001111122111111 3589999999999999898
Q ss_pred HHHHhhhcccCCceEEEEeCCCCHH---------------------HHHHHHHHhcCCCCCcEEEEEccCCccccccccc
Q 006698 454 EQLRHRFNWREGQEVLYMDGKQDVK---------------------KRQSSINVLNDPSSQARIMLASTKACCEGINLVG 512 (635)
Q Consensus 454 ~~L~~~~~~~~g~~~~~i~G~~~~~---------------------~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~ 512 (635)
+.|.+.++...+...+.++|+.+.+ ....++++|+++ +..+++|+ .+...+|+|.+.
T Consensus 532 ~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~-~~~~ilIV-vdmllTGFDaP~ 609 (667)
T TIGR00348 532 NALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE-ENPKLLIV-VDMLLTGFDAPI 609 (667)
T ss_pred HHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC-CCceEEEE-EcccccccCCCc
Confidence 8887764322235667777765433 124789999874 56777774 799999999999
Q ss_pred CCeEEEeCCCCChhhHHhhhhhhhhc-CCcc-eEEEEEEEe
Q 006698 513 ASRVVLLDVVWNPFVERQAISRAYRL-GQKR-VVHVYHLIT 551 (635)
Q Consensus 513 a~~vi~~d~~wnp~~~~Qa~gR~~R~-GQ~~-~V~vy~li~ 551 (635)
++++++.-|--+. ...|++||+.|+ +..| ...|+.|+.
T Consensus 610 l~tLyldKplk~h-~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 610 LNTLYLDKPLKYH-GLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred cceEEEecccccc-HHHHHHHHhccccCCCCCCEEEEECcC
Confidence 9999888877665 478999999995 4334 667777754
No 63
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.87 E-value=4.1e-20 Score=191.67 Aligned_cols=307 Identities=18% Similarity=0.212 Sum_probs=205.8
Q ss_pred HHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccch
Q 006698 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSML 145 (635)
Q Consensus 66 l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~ 145 (635)
+.-+|-..|+.++.=+..-+... ..-+=+|-.++|+|||++|+..+......|. -+..++|..++
T Consensus 259 LPF~LT~aQ~~vi~EI~~Dl~~~-------------~~M~RLlQGDVGSGKTvVA~laml~ai~~G~--Q~ALMAPTEIL 323 (677)
T COG1200 259 LPFKLTNAQKRVIKEILADLASP-------------VPMNRLLQGDVGSGKTVVALLAMLAAIEAGY--QAALMAPTEIL 323 (677)
T ss_pred CCCCccHHHHHHHHHHHhhhcCc-------------hhhHHHhccCcCCCHHHHHHHHHHHHHHcCC--eeEEeccHHHH
Confidence 44578899999999886655432 1234488889999999999877766555443 47899997766
Q ss_pred -HHHHHHHHHhcCC--CcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcc
Q 006698 146 -LTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222 (635)
Q Consensus 146 -~qW~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~ 222 (635)
.|-.+.+.+|+++ ++|..+.+... ++.++.....+. ....+++|-|+..|+..+
T Consensus 324 A~QH~~~~~~~l~~~~i~V~lLtG~~k-gk~r~~~l~~l~--------------------~G~~~ivVGTHALiQd~V-- 380 (677)
T COG1200 324 AEQHYESLRKWLEPLGIRVALLTGSLK-GKARKEILEQLA--------------------SGEIDIVVGTHALIQDKV-- 380 (677)
T ss_pred HHHHHHHHHHHhhhcCCeEEEeecccc-hhHHHHHHHHHh--------------------CCCCCEEEEcchhhhcce--
Confidence 7889999999874 45555554332 222222222111 135789999999887644
Q ss_pred hhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhc-c-cCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhh
Q 006698 223 DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRI-K-TRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300 (635)
Q Consensus 223 ~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l-~-~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~ 300 (635)
......+||+||-|++. ..+...++.- . .++.+.||||||+.++.=- .+++.+
T Consensus 381 ------~F~~LgLVIiDEQHRFG---V~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt----------~fgDld------ 435 (677)
T COG1200 381 ------EFHNLGLVIIDEQHRFG---VHQRLALREKGEQNPHVLVMTATPIPRTLALT----------AFGDLD------ 435 (677)
T ss_pred ------eecceeEEEEecccccc---HHHHHHHHHhCCCCCcEEEEeCCCchHHHHHH----------Hhcccc------
Confidence 22345899999999984 3445555554 5 5899999999987655310 011100
Q ss_pred hhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEE--EEeCCcHHHHHHHHHHhhhhh
Q 006698 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSV--VILQPDEFQKRLCKAVEGVKS 378 (635)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~--v~~~~s~~q~~~y~~~~~~~~ 378 (635)
-.+.+++|+.+.-+ ..++. ..-.++|+.+.
T Consensus 436 -------------------------------------------vS~IdElP~GRkpI~T~~i~~-~~~~~v~e~i~---- 467 (677)
T COG1200 436 -------------------------------------------VSIIDELPPGRKPITTVVIPH-ERRPEVYERIR---- 467 (677)
T ss_pred -------------------------------------------chhhccCCCCCCceEEEEecc-ccHHHHHHHHH----
Confidence 00114677653222 22221 22222333221
Q ss_pred HHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc-CCCeEEEEcCChh--------HH
Q 006698 379 FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS-TNEKVLVFSQYIE--------PL 449 (635)
Q Consensus 379 ~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~-~~~kviIFs~~~~--------~~ 449 (635)
++. .|+++.+-|.-.. .+
T Consensus 468 -----------------------------------------------------~ei~~GrQaY~VcPLIeESE~l~l~~a 494 (677)
T COG1200 468 -----------------------------------------------------EEIAKGRQAYVVCPLIEESEKLELQAA 494 (677)
T ss_pred -----------------------------------------------------HHHHcCCEEEEEeccccccccchhhhH
Confidence 111 5666666665432 34
Q ss_pred HHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCC-CChhhH
Q 006698 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVV-WNPFVE 528 (635)
Q Consensus 450 ~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~-wnp~~~ 528 (635)
..+...|...+ ++..+..+||.++.+++++++.+|++ +++.||+ +|.+..+|+|+++|+.+|+.++. +--+..
T Consensus 495 ~~~~~~L~~~~---~~~~vgL~HGrm~~~eKd~vM~~Fk~--~e~~ILV-aTTVIEVGVdVPnATvMVIe~AERFGLaQL 568 (677)
T COG1200 495 EELYEELKSFL---PELKVGLVHGRMKPAEKDAVMEAFKE--GEIDILV-ATTVIEVGVDVPNATVMVIENAERFGLAQL 568 (677)
T ss_pred HHHHHHHHHHc---ccceeEEEecCCChHHHHHHHHHHHc--CCCcEEE-EeeEEEecccCCCCeEEEEechhhhhHHHH
Confidence 45666666554 38889999999999999999999998 5567766 79999999999999999999985 788899
Q ss_pred HhhhhhhhhcCCcc
Q 006698 529 RQAISRAYRLGQKR 542 (635)
Q Consensus 529 ~Qa~gR~~R~GQ~~ 542 (635)
-|-.||++|=+...
T Consensus 569 HQLRGRVGRG~~qS 582 (677)
T COG1200 569 HQLRGRVGRGDLQS 582 (677)
T ss_pred HHhccccCCCCcce
Confidence 99999999955444
No 64
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.86 E-value=2.4e-20 Score=202.50 Aligned_cols=104 Identities=20% Similarity=0.230 Sum_probs=85.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHH-----HHHHHhcC----CC-----CCcEEEEEc
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQ-----SSINVLND----PS-----SQARIMLAS 500 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~-----~~i~~F~~----~~-----~~~~vll~s 500 (635)
.+.++||||+.+..++.+.+.|.+. ++ ..++|.+++.+|. .++++|++ +. ++.+ +|++
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~-----g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~-ILVA 342 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKE-----KF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTV-YLVC 342 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc-----CC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccce-EEec
Confidence 5678999999999999999999875 65 8999999999999 77899975 21 1234 4568
Q ss_pred cCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcc--eEEEEEE
Q 006698 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKR--VVHVYHL 549 (635)
Q Consensus 501 t~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~--~V~vy~l 549 (635)
|++++.|||+.. ++||++..| +..+.||+||++|.|... .++++.+
T Consensus 343 TdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 343 TSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred cchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 999999999985 899987766 478999999999999864 4555544
No 65
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=7.1e-20 Score=179.19 Aligned_cols=317 Identities=20% Similarity=0.237 Sum_probs=205.9
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHH-HhC---CCC--CcEEEeC-
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM-KLH---PRC--RPVIIAP- 141 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~-~~~---~~~--~~LIv~P- 141 (635)
..-|-|..++-.++. ++.+.+-..+|+|||+.-+.-+.... +.. +.+ ..|||+|
T Consensus 28 ~mTpVQa~tIPlll~-------------------~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPT 88 (567)
T KOG0345|consen 28 KMTPVQAATIPLLLK-------------------NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPT 88 (567)
T ss_pred ccCHHHHhhhHHHhc-------------------CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCc
Confidence 477899999988865 66899999999999977776666555 222 112 3499999
Q ss_pred ccchHHHHHHHH---HhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHH
Q 006698 142 RSMLLTWEEEFK---KWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEK 218 (635)
Q Consensus 142 ~~l~~qW~~E~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~ 218 (635)
.-|..|-.+-+. .+.++++...+-|.. .-+..+..+. .....|+|.|+..+..
T Consensus 89 RELa~QI~~V~~~F~~~l~~l~~~l~vGG~----~v~~Di~~fk--------------------ee~~nIlVgTPGRL~d 144 (567)
T KOG0345|consen 89 RELARQIREVAQPFLEHLPNLNCELLVGGR----SVEEDIKTFK--------------------EEGPNILVGTPGRLLD 144 (567)
T ss_pred HHHHHHHHHHHHHHHHhhhccceEEEecCc----cHHHHHHHHH--------------------HhCCcEEEeCchhHHH
Confidence 445555554444 345555555554431 1111122122 2467799999998877
Q ss_pred hhcchhhhhhhccCCCEEEEeCCCcCCCc--ccHHHHHHHhcccCcEE-EEecccCCCChhhHHHHHHhhhhhhhhhHHH
Q 006698 219 LVSGDELSGILLDLPGLFVFDEGHTPRND--DTCMFKALSRIKTRRRI-ILSGTPFQNNFQELENTLSLVRQEFGEVLRT 295 (635)
Q Consensus 219 ~~~~~~~~~~~~~~~~~vIvDEaH~~kn~--~s~~~~~l~~l~~~~~l-~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~ 295 (635)
++..+. ..+.....+++|+|||.++-.- .......+..|+..+|- +.|||-.+ ..+||
T Consensus 145 i~~~~~-~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~-~v~dL----------------- 205 (567)
T KOG0345|consen 145 ILQREA-EKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQ-EVEDL----------------- 205 (567)
T ss_pred HHhchh-hhccccccceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhhH-HHHHH-----------------
Confidence 664411 1122234589999999998653 34455666677555554 55888411 11111
Q ss_pred HHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhh
Q 006698 296 VRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEG 375 (635)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~ 375 (635)
.+.-++.-+....+..-....|.
T Consensus 206 ----------------------------------~raGLRNpv~V~V~~k~~~~tPS----------------------- 228 (567)
T KOG0345|consen 206 ----------------------------------ARAGLRNPVRVSVKEKSKSATPS----------------------- 228 (567)
T ss_pred ----------------------------------HHhhccCceeeeecccccccCch-----------------------
Confidence 00001000000000000000110
Q ss_pred hhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHH
Q 006698 376 VKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQ 455 (635)
Q Consensus 376 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~ 455 (635)
.+.......+..-|...|..+|.....+|+|||-..-..+++....
T Consensus 229 ----------------------------------~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~ 274 (567)
T KOG0345|consen 229 ----------------------------------SLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKL 274 (567)
T ss_pred ----------------------------------hhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHH
Confidence 0111111112234888888888888889999999999999998888
Q ss_pred HHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhh
Q 006698 456 LRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535 (635)
Q Consensus 456 L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~ 535 (635)
|....+ +..+..+||.++...|...++.|.+.. -.|| .+|++++.|||+++.+.||.||||-+|+.+.+|.||.
T Consensus 275 ~~~~l~---~~~i~~iHGK~~q~~R~k~~~~F~~~~--~~vl-~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRT 348 (567)
T KOG0345|consen 275 FSRLLK---KREIFSIHGKMSQKARAKVLEAFRKLS--NGVL-FCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRT 348 (567)
T ss_pred HHHHhC---CCcEEEecchhcchhHHHHHHHHHhcc--CceE-EeehhhhccCCCCCceEEEecCCCCChhHHHhhcchh
Confidence 887633 788999999999999999999998722 2344 4799999999999999999999999999999999999
Q ss_pred hhcCCcceE
Q 006698 536 YRLGQKRVV 544 (635)
Q Consensus 536 ~R~GQ~~~V 544 (635)
.|.|..-.-
T Consensus 349 aR~gr~G~A 357 (567)
T KOG0345|consen 349 ARAGREGNA 357 (567)
T ss_pred hhccCccce
Confidence 999965433
No 66
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.85 E-value=2.4e-20 Score=183.75 Aligned_cols=305 Identities=20% Similarity=0.190 Sum_probs=196.5
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCC-----CCCcEEEeC-ccchHHHHHHHHHh---cCCCcccccCCCCCcCcc
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHP-----RCRPVIIAP-RSMLLTWEEEFKKW---GIDIPFYNLNKPELSGKE 173 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~-----~~~~LIv~P-~~l~~qW~~E~~~~---~~~~~v~~~~~~~~~~~~ 173 (635)
+..++.+.-+|+|||+.-+.-+..+....+ .-.+||||| .-|-.|-..|.++. .++..+..+-|......+
T Consensus 119 gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e 198 (543)
T KOG0342|consen 119 GKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVE 198 (543)
T ss_pred CccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHH
Confidence 668999999999999776655555443322 123499999 55667777776643 444444333332211111
Q ss_pred cchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhhhhccCCCEEEEeCCCcCCCcc--cHH
Q 006698 174 NNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDD--TCM 251 (635)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~--s~~ 251 (635)
.... .....++|.|+..+.....+ ...+....-+++|+|||.++..-+ -..
T Consensus 199 ~~kl-------------------------~k~~niliATPGRLlDHlqN--t~~f~~r~~k~lvlDEADrlLd~GF~~di 251 (543)
T KOG0342|consen 199 ADKL-------------------------VKGCNILIATPGRLLDHLQN--TSGFLFRNLKCLVLDEADRLLDIGFEEDV 251 (543)
T ss_pred HHHh-------------------------hccccEEEeCCchHHhHhhc--CCcchhhccceeEeecchhhhhcccHHHH
Confidence 1111 23678999999998877744 333444444789999999985432 223
Q ss_pred HHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHH
Q 006698 252 FKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKEL 330 (635)
Q Consensus 252 ~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 330 (635)
-+.+..+ +.+..++.|||- .....++..
T Consensus 252 ~~Ii~~lpk~rqt~LFSAT~-~~kV~~l~~-------------------------------------------------- 280 (543)
T KOG0342|consen 252 EQIIKILPKQRQTLLFSATQ-PSKVKDLAR-------------------------------------------------- 280 (543)
T ss_pred HHHHHhccccceeeEeeCCC-cHHHHHHHH--------------------------------------------------
Confidence 4444445 566779999994 111111110
Q ss_pred HHhhcc-hhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCCCCCccccccCccchH
Q 006698 331 KEKIAP-FVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSA 409 (635)
Q Consensus 331 ~~~l~~-~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~ 409 (635)
-.+.+ ..... -..+....+ ..
T Consensus 281 -~~L~~d~~~v~-------~~d~~~~~T--------------------------------------------------he 302 (543)
T KOG0342|consen 281 -GALKRDPVFVN-------VDDGGERET--------------------------------------------------HE 302 (543)
T ss_pred -HhhcCCceEee-------cCCCCCcch--------------------------------------------------hh
Confidence 00000 00000 000000000 00
Q ss_pred HHhhcccCccccchHHHHHHHHHhc-CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhc
Q 006698 410 KLARLKLDPEAGIKTRFLLILLELS-TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN 488 (635)
Q Consensus 410 ~l~~~~~~~~~s~K~~~l~~~l~~~-~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~ 488 (635)
.+++...-.....++..+..+|.+. ...|+|||+....+..+..+.|... .+++..|||+.++..|..+..+|.
T Consensus 303 ~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~-----dlpv~eiHgk~~Q~kRT~~~~~F~ 377 (543)
T KOG0342|consen 303 RLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYI-----DLPVLEIHGKQKQNKRTSTFFEFC 377 (543)
T ss_pred cccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhc-----CCchhhhhcCCcccccchHHHHHh
Confidence 0111111111223456677777777 4499999999999999999999976 999999999999999999999999
Q ss_pred CCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCC
Q 006698 489 DPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553 (635)
Q Consensus 489 ~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~ 553 (635)
...+. +|++|++++.|+|.++.+.||-||||-+|..|++|+||..|-| +.-.-+-++++.
T Consensus 378 kaesg---IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~g--k~G~alL~l~p~ 437 (543)
T KOG0342|consen 378 KAESG---ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREG--KEGKALLLLAPW 437 (543)
T ss_pred hcccc---eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccC--CCceEEEEeChh
Confidence 75443 5668999999999999999999999999999999999999966 445555566653
No 67
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.85 E-value=6.4e-20 Score=190.98 Aligned_cols=314 Identities=17% Similarity=0.127 Sum_probs=212.6
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLT 147 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~q 147 (635)
..||-|.++++.++. ++.+|.-.++|.||++..-.- +++. .+.+|||.| .+|...
T Consensus 17 ~FR~gQ~evI~~~l~-------------------g~d~lvvmPTGgGKSlCyQiP--All~---~G~TLVVSPLiSLM~D 72 (590)
T COG0514 17 SFRPGQQEIIDALLS-------------------GKDTLVVMPTGGGKSLCYQIP--ALLL---EGLTLVVSPLISLMKD 72 (590)
T ss_pred ccCCCHHHHHHHHHc-------------------CCcEEEEccCCCCcchHhhhH--HHhc---CCCEEEECchHHHHHH
Confidence 588999999998865 679999999999999543222 2222 457899999 899998
Q ss_pred HHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhh
Q 006698 148 WEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG 227 (635)
Q Consensus 148 W~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~ 227 (635)
..+.+...+ +.+..+++.. +..+ ...+...... ...+++-.+++.+... .++..
T Consensus 73 QV~~l~~~G--i~A~~lnS~l-~~~e---~~~v~~~l~~-----------------g~~klLyisPErl~~~---~f~~~ 126 (590)
T COG0514 73 QVDQLEAAG--IRAAYLNSTL-SREE---RQQVLNQLKS-----------------GQLKLLYISPERLMSP---RFLEL 126 (590)
T ss_pred HHHHHHHcC--ceeehhhccc-CHHH---HHHHHHHHhc-----------------CceeEEEECchhhcCh---HHHHH
Confidence 899998865 3344444321 1111 1222222211 2357888888887654 34444
Q ss_pred hhccCCCEEEEeCCCcCCCc-------ccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhh
Q 006698 228 ILLDLPGLFVFDEGHTPRND-------DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300 (635)
Q Consensus 228 ~~~~~~~~vIvDEaH~~kn~-------~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~ 300 (635)
+......+++|||||-+-.+ ..........++...+++||||--..--.|+-..|.+-.|..+... |
T Consensus 127 L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s-----f- 200 (590)
T COG0514 127 LKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGS-----F- 200 (590)
T ss_pred HHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec-----C-
Confidence 44556899999999976543 4455555666677789999999654444555444443332211000 0
Q ss_pred hhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHH
Q 006698 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFV 380 (635)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~ 380 (635)
+-|.....++..
T Consensus 201 ------------------------------------------------dRpNi~~~v~~~-------------------- 212 (590)
T COG0514 201 ------------------------------------------------DRPNLALKVVEK-------------------- 212 (590)
T ss_pred ------------------------------------------------CCchhhhhhhhc--------------------
Confidence 000000000000
Q ss_pred HHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhh
Q 006698 381 ELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460 (635)
Q Consensus 381 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~ 460 (635)
...-.+..++.+ +....+...||||.++...+.+.+.|...
T Consensus 213 -------------------------------------~~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~- 253 (590)
T COG0514 213 -------------------------------------GEPSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKN- 253 (590)
T ss_pred -------------------------------------ccHHHHHHHHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHC-
Confidence 000112222222 11225667899999999999999999997
Q ss_pred cccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCC
Q 006698 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQ 540 (635)
Q Consensus 461 ~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ 540 (635)
|+....+||+++.++|+...++|.+ ++..|++ +|.|-|.|||-++...|||||+|-+...|.|-+||++|-|.
T Consensus 254 ----g~~a~~YHaGl~~~eR~~~q~~f~~--~~~~iiV-AT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~ 326 (590)
T COG0514 254 ----GISAGAYHAGLSNEERERVQQAFLN--DEIKVMV-ATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGL 326 (590)
T ss_pred ----CCceEEecCCCCHHHHHHHHHHHhc--CCCcEEE-EeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCC
Confidence 9999999999999999999999997 4566666 69999999999999999999999999999999999999997
Q ss_pred cceEEEEEEEeCCC
Q 006698 541 KRVVHVYHLITSET 554 (635)
Q Consensus 541 ~~~V~vy~li~~~t 554 (635)
...+. .|+..+.
T Consensus 327 ~a~ai--ll~~~~D 338 (590)
T COG0514 327 PAEAI--LLYSPED 338 (590)
T ss_pred cceEE--Eeecccc
Confidence 66554 3555443
No 68
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.85 E-value=1e-19 Score=209.02 Aligned_cols=101 Identities=16% Similarity=0.146 Sum_probs=86.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhccc----------------------------CCceEEEEeCCCCHHHHHHHHHH
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWR----------------------------EGQEVLYMDGKQDVKKRQSSINV 486 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~----------------------------~g~~~~~i~G~~~~~~r~~~i~~ 486 (635)
.+.++||||+.+..++.+...|.+.+... ....+...||+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 57889999999999999999997653100 01124678899999999999999
Q ss_pred hcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhc
Q 006698 487 LNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRL 538 (635)
Q Consensus 487 F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~ 538 (635)
|++ |..++++ +|++++.|||+...+.||+++.|.+.+.+.||+||++|.
T Consensus 323 fK~--G~LrvLV-ATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKS--GELRCVV-ATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHh--CCceEEE-eCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 998 6688777 699999999999999999999999999999999999996
No 69
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=1.2e-19 Score=181.92 Aligned_cols=313 Identities=20% Similarity=0.256 Sum_probs=206.5
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh-CC----------CCCc
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL-HP----------RCRP 136 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~-~~----------~~~~ 136 (635)
..+-|+|+-++.-+. .+++.+.+.++|+|||..-+.-+..++.. ++ ....
T Consensus 95 ~~ptpvQk~sip~i~-------------------~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~ 155 (482)
T KOG0335|consen 95 TKPTPVQKYSIPIIS-------------------GGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRA 155 (482)
T ss_pred cCCCcceeeccceee-------------------cCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCce
Confidence 458899998886552 37889999999999997776555444433 22 2345
Q ss_pred EEEeC-ccchHHHHHHHHHhcCC--CcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeH
Q 006698 137 VIIAP-RSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSY 213 (635)
Q Consensus 137 LIv~P-~~l~~qW~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty 213 (635)
||++| ..|+.|-..|.+++... ++.....+....+...+ .-...++++++|.
T Consensus 156 lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~-------------------------~~~~gcdIlvaTp 210 (482)
T KOG0335|consen 156 LILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLR-------------------------FIKRGCDILVATP 210 (482)
T ss_pred EEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhh-------------------------hhccCccEEEecC
Confidence 99999 77999999999998543 22222222111111111 1135789999999
Q ss_pred HHHHHhhcchhhhhhhccCCCEEEEeCCCcCCCc---ccHHHHHHHhc-----ccCcEEEEecccCCCChhhHHHHHHhh
Q 006698 214 RLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND---DTCMFKALSRI-----KTRRRIILSGTPFQNNFQELENTLSLV 285 (635)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~---~s~~~~~l~~l-----~~~~~l~LTgTP~~n~~~el~~ll~~l 285 (635)
..+...... ..+......++|+|||.++-.. .-+..+.+... ..+..++.|||= +.++-.+..
T Consensus 211 GrL~d~~e~---g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtf----p~~iq~l~~-- 281 (482)
T KOG0335|consen 211 GRLKDLIER---GKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATF----PKEIQRLAA-- 281 (482)
T ss_pred chhhhhhhc---ceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccC----ChhhhhhHH--
Confidence 988876644 3344445579999999998542 23344444433 345568888882 111111000
Q ss_pred hhhhhhhHHHHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcc-hhhhcccccccccCCCceEEEEEeCCcH
Q 006698 286 RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAP-FVNVHKGTVLQESLPGLRHSVVILQPDE 364 (635)
Q Consensus 286 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~rr~~~~~~~~lp~~~~~~v~~~~s~ 364 (635)
..+.. ++.- .-..+...-......+++|.-+.
T Consensus 282 ----------------------------------------------~fl~~~yi~l-aV~rvg~~~~ni~q~i~~V~~~~ 314 (482)
T KOG0335|consen 282 ----------------------------------------------DFLKDNYIFL-AVGRVGSTSENITQKILFVNEME 314 (482)
T ss_pred ----------------------------------------------HHhhccceEE-EEeeeccccccceeEeeeecchh
Confidence 00000 1110 00011111122223333333222
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc---------C
Q 006698 365 FQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS---------T 435 (635)
Q Consensus 365 ~q~~~y~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~---------~ 435 (635)
|...|.+++... .
T Consensus 315 ----------------------------------------------------------kr~~Lldll~~~~~~~~~~~~~ 336 (482)
T KOG0335|consen 315 ----------------------------------------------------------KRSKLLDLLNKDDGPPSDGEPK 336 (482)
T ss_pred ----------------------------------------------------------hHHHHHHHhhcccCCcccCCcc
Confidence 333333333321 3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCe
Q 006698 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515 (635)
Q Consensus 436 ~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~ 515 (635)
.++++||++.+..++.+..+|... ++++..|+|..++.+|.+.++.|.+ +.+.|+| +|.+++.|||+.+..+
T Consensus 337 ~e~tlvFvEt~~~~d~l~~~l~~~-----~~~~~sIhg~~tq~er~~al~~Fr~--g~~pvlV-aT~VaaRGlDi~~V~h 408 (482)
T KOG0335|consen 337 WEKTLVFVETKRGADELAAFLSSN-----GYPAKSIHGDRTQIEREQALNDFRN--GKAPVLV-ATNVAARGLDIPNVKH 408 (482)
T ss_pred cceEEEEeeccchhhHHHHHHhcC-----CCCceeecchhhhhHHHHHHHHhhc--CCcceEE-EehhhhcCCCCCCCce
Confidence 359999999999999999999997 9999999999999999999999998 6677777 5999999999999999
Q ss_pred EEEeCCCCChhhHHhhhhhhhhcCCcceEEE
Q 006698 516 VVLLDVVWNPFVERQAISRAYRLGQKRVVHV 546 (635)
Q Consensus 516 vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~v 546 (635)
||+||+|-+-..|.+||||.+|.|+.-..+.
T Consensus 409 VInyDmP~d~d~YvHRIGRTGR~Gn~G~ats 439 (482)
T KOG0335|consen 409 VINYDMPADIDDYVHRIGRTGRVGNGGRATS 439 (482)
T ss_pred eEEeecCcchhhHHHhccccccCCCCceeEE
Confidence 9999999999999999999999998754443
No 70
>COG4889 Predicted helicase [General function prediction only]
Probab=99.84 E-value=3.7e-20 Score=192.54 Aligned_cols=403 Identities=16% Similarity=0.183 Sum_probs=199.4
Q ss_pred cChhHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 62 ~p~~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
+|..-..+|||||..|+....+.+.. +-+|=|.+.+|+|||++++-+..++-. .++|++||
T Consensus 154 l~l~~~kk~R~hQq~Aid~a~~~F~~---------------n~RGkLIMAcGTGKTfTsLkisEala~----~~iL~LvP 214 (1518)
T COG4889 154 LPLKKPKKPRPHQQTAIDAAKEGFSD---------------NDRGKLIMACGTGKTFTSLKISEALAA----ARILFLVP 214 (1518)
T ss_pred cccCCCCCCChhHHHHHHHHHhhccc---------------ccCCcEEEecCCCccchHHHHHHHHhh----hheEeecc
Confidence 33344568999999999999887643 446677788999999999988866643 67899999
Q ss_pred -ccchHHHHHHHHHhc-CCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHh
Q 006698 142 -RSMLLTWEEEFKKWG-IDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219 (635)
Q Consensus 142 -~~l~~qW~~E~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~ 219 (635)
-+|+.|--+|...-. .++....+-+....++..+.....--.+........+.....-.....+--||.+||+.+...
T Consensus 215 SIsLLsQTlrew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i 294 (1518)
T COG4889 215 SISLLSQTLREWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRI 294 (1518)
T ss_pred hHHHHHHHHHHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHH
Confidence 788888766654321 111111110000000001000000000000000000000000011123445889999988765
Q ss_pred hcchhhhhhhccCCCEEEEeCCCcCCCc------ccHH--HHHHHhcccCcEEEEecccCC------CChhhHHHHHHhh
Q 006698 220 VSGDELSGILLDLPGLFVFDEGHTPRND------DTCM--FKALSRIKTRRRIILSGTPFQ------NNFQELENTLSLV 285 (635)
Q Consensus 220 ~~~~~~~~~~~~~~~~vIvDEaH~~kn~------~s~~--~~~l~~l~~~~~l~LTgTP~~------n~~~el~~ll~~l 285 (635)
.. ....-...||+||+||||+-.+. .|.. ...-..+++.+|+.|||||-- .+..|--..+.-+
T Consensus 295 ~e---AQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SM 371 (1518)
T COG4889 295 KE---AQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSM 371 (1518)
T ss_pred HH---HHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeecc
Confidence 42 33445567999999999987542 1111 111223478889999999921 0111110000000
Q ss_pred hhhhhhhHHHHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHH
Q 006698 286 RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEF 365 (635)
Q Consensus 286 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~ 365 (635)
+. -..|+..+.+-.+ ....-..-|......+..++-...
T Consensus 372 DD--------e~~fGeef~rl~F---------------------------------geAv~rdlLTDYKVmvlaVd~~~i 410 (1518)
T COG4889 372 DD--------ELTFGEEFHRLGF---------------------------------GEAVERDLLTDYKVMVLAVDKEVI 410 (1518)
T ss_pred ch--------hhhhchhhhcccH---------------------------------HHHHHhhhhccceEEEEEechhhh
Confidence 00 0011111100000 000000122333333333332222
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCC
Q 006698 366 QKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQY 445 (635)
Q Consensus 366 q~~~y~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~ 445 (635)
+..+-..+....+.+......+.+-++-.+......+... .....+ .+ +-+|.|-||..
T Consensus 411 ~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~------~~~~~d---~a------------p~~RAIaF~k~ 469 (1518)
T COG4889 411 AGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDL------KNIKAD---TA------------PMQRAIAFAKD 469 (1518)
T ss_pred hhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccc------cCCcCC---ch------------HHHHHHHHHHh
Confidence 3333222222222233333333333333332222110000 000000 00 11233333333
Q ss_pred hhHH-----------HHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcC-CCCCcEEEEEccCCcccccccccC
Q 006698 446 IEPL-----------TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND-PSSQARIMLASTKACCEGINLVGA 513 (635)
Q Consensus 446 ~~~~-----------~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~-~~~~~~vll~st~~~~~GlnL~~a 513 (635)
..+. +.....|.+.|.. -.+.+-.++|.|+..+|.++...-+. ....|+||= +.++++||+|+++.
T Consensus 470 I~tSK~i~~sFe~Vve~Y~~Elk~d~~n-L~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlS-NaRcLSEGVDVPaL 547 (1518)
T COG4889 470 IKTSKQIAESFETVVEAYDEELKKDFKN-LKISIDHVDGTMNALERLDLLELKNTFEPNECKILS-NARCLSEGVDVPAL 547 (1518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCC-ceEEeecccccccHHHHHHHHhccCCCCcchheeec-cchhhhcCCCcccc
Confidence 3332 2222223332210 13556679999999999766654432 224566544 89999999999999
Q ss_pred CeEEEeCCCCChhhHHhhhhhhhhcCCcc-eEEEEEEE
Q 006698 514 SRVVLLDVVWNPFVERQAISRAYRLGQKR-VVHVYHLI 550 (635)
Q Consensus 514 ~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~-~V~vy~li 550 (635)
+.||||||--+.....|++||+.|-.-.| --+|.--+
T Consensus 548 DsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 548 DSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred ceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 99999999999999999999999976544 44554444
No 71
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.84 E-value=1.4e-19 Score=180.12 Aligned_cols=335 Identities=19% Similarity=0.226 Sum_probs=223.7
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHH-HHHhCC----CCCcEEEeC-c
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YMKLHP----RCRPVIIAP-R 142 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~-~~~~~~----~~~~LIv~P-~ 142 (635)
.+..-|++++...++ ++.+|=|.-+|+|||+.-+.-+.. +.+... +-.+|||.| .
T Consensus 91 ~~teiQ~~~Ip~aL~-------------------G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTR 151 (758)
T KOG0343|consen 91 KMTEIQRDTIPMALQ-------------------GHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTR 151 (758)
T ss_pred cHHHHHHhhcchhcc-------------------CcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchH
Confidence 366778888776654 678888999999999665543333 333221 124699999 6
Q ss_pred cchHHHHHHHHHhcCCCcccccCCCCCc-CcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhc
Q 006698 143 SMLLTWEEEFKKWGIDIPFYNLNKPELS-GKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221 (635)
Q Consensus 143 ~l~~qW~~E~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~ 221 (635)
-|..|-..-+.+.+.. +.++..-.- |.+....... ....+|+|||+..+..++.
T Consensus 152 ELA~QtFevL~kvgk~---h~fSaGLiiGG~~~k~E~eR----------------------i~~mNILVCTPGRLLQHmd 206 (758)
T KOG0343|consen 152 ELALQTFEVLNKVGKH---HDFSAGLIIGGKDVKFELER----------------------ISQMNILVCTPGRLLQHMD 206 (758)
T ss_pred HHHHHHHHHHHHHhhc---cccccceeecCchhHHHHHh----------------------hhcCCeEEechHHHHHHhh
Confidence 6778888888776421 222221112 2221111111 1356899999998887764
Q ss_pred chhhhhhhccCCCEEEEeCCCcCCCcc--cHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHh
Q 006698 222 GDELSGILLDLPGLFVFDEGHTPRNDD--TCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK 298 (635)
Q Consensus 222 ~~~~~~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~ 298 (635)
. -..+......++|+|||.++-..+ ..+-..+..| +.+..++.|||+- ++..||.- |++-+|.+.+-
T Consensus 207 e--~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt-~svkdLaR-LsL~dP~~vsv------ 276 (758)
T KOG0343|consen 207 E--NPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQT-KSVKDLAR-LSLKDPVYVSV------ 276 (758)
T ss_pred h--cCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccc-hhHHHHHH-hhcCCCcEEEE------
Confidence 3 333444456799999999985432 2333444555 5667899999983 34444422 12222322110
Q ss_pred hhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhh
Q 006698 299 SGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKS 378 (635)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~ 378 (635)
+.... ...|.
T Consensus 277 ------------------------------------------he~a~--~atP~-------------------------- 286 (758)
T KOG0343|consen 277 ------------------------------------------HENAV--AATPS-------------------------- 286 (758)
T ss_pred ------------------------------------------ecccc--ccChh--------------------------
Confidence 00000 01111
Q ss_pred HHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHh
Q 006698 379 FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRH 458 (635)
Q Consensus 379 ~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~ 458 (635)
.+.+........-|+..|...+..+...|.|||-.+...+.++.+.++.
T Consensus 287 -------------------------------~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~r 335 (758)
T KOG0343|consen 287 -------------------------------NLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCR 335 (758)
T ss_pred -------------------------------hhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHh
Confidence 1111111122244888999999999899999999999999999999987
Q ss_pred hhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhc
Q 006698 459 RFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRL 538 (635)
Q Consensus 459 ~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~ 538 (635)
. .+|++...++|++++..|-++.++|.. . ..++|.+|++++.|||++..+.||-+|.|=+...|++|+||..|.
T Consensus 336 l---rpg~~l~~L~G~~~Q~~R~ev~~~F~~--~-~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~ 409 (758)
T KOG0343|consen 336 L---RPGIPLLALHGTMSQKKRIEVYKKFVR--K-RAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARY 409 (758)
T ss_pred c---CCCCceeeeccchhHHHHHHHHHHHHH--h-cceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcc
Confidence 6 469999999999999999999999986 2 345666899999999999999999999999999999999999998
Q ss_pred CCcceEEEEEEEeCCChHHHHHHHHHHhh
Q 006698 539 GQKRVVHVYHLITSETLEWDKLRRQARKV 567 (635)
Q Consensus 539 GQ~~~V~vy~li~~~tiEe~i~~~~~~K~ 567 (635)
+..-...+ +++ -+-+|.++.++..|.
T Consensus 410 ~~~G~sll--~L~-psEeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 410 KERGESLL--MLT-PSEEEAMLKKLQKKK 435 (758)
T ss_pred cCCCceEE--EEc-chhHHHHHHHHHHcC
Confidence 75544443 333 344578888887775
No 72
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.84 E-value=4e-19 Score=192.07 Aligned_cols=112 Identities=15% Similarity=0.117 Sum_probs=90.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCC
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGAS 514 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~ 514 (635)
.+.++|||+.....++.+.+.|.+.. +++.+..+||++++. ++.+++|.. +++.+|+| +|+.++.|||+++.+
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~---~~~~v~~LHG~Lsq~--eq~l~~ff~-~gk~kILV-ATdIAERGIDIp~V~ 466 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRL---PIYDFYIIHGKVPNI--DEILEKVYS-SKNPSIII-STPYLESSVTIRNAT 466 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhc---CCceEEeccCCcCHH--HHHHHHHhc-cCceeEEe-ccChhhccccccCee
Confidence 35689999999999999999998753 268899999999864 566777732 25667666 799999999999999
Q ss_pred eEEEeC---CC---------CChhhHHhhhhhhhhcCCcceEEEEEEEeCCChH
Q 006698 515 RVVLLD---VV---------WNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556 (635)
Q Consensus 515 ~vi~~d---~~---------wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiE 556 (635)
+||.++ .| .+.+.+.||.||++|. ++-.+|+|+++....
T Consensus 467 ~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~~ 517 (675)
T PHA02653 467 HVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLLK 517 (675)
T ss_pred EEEECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHhH
Confidence 999997 22 2667889999999997 468889999887653
No 73
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.83 E-value=3.3e-18 Score=174.98 Aligned_cols=88 Identities=14% Similarity=0.198 Sum_probs=70.5
Q ss_pred cCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccC
Q 006698 434 STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513 (635)
Q Consensus 434 ~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a 513 (635)
.++.|+|||++....++.+...|.... .++.+..++|.++..+|.+.. +..|+ ++|++++.|||+...
T Consensus 270 ~~~~k~LIf~nt~~~~~~l~~~L~~~~---~~~~~~~l~g~~~~~~R~~~~--------~~~iL-VaTdv~~rGiDi~~~ 337 (357)
T TIGR03158 270 LPGERGAIILDSLDEVNRLSDLLQQQG---LGDDIGRITGFAPKKDRERAM--------QFDIL-LGTSTVDVGVDFKRD 337 (357)
T ss_pred cCCCeEEEEECCHHHHHHHHHHHhhhC---CCceEEeeecCCCHHHHHHhc--------cCCEE-EEecHHhcccCCCCc
Confidence 367899999999999999999998751 145788999999998886542 23444 579999999999854
Q ss_pred CeEEEeCCCCChhhHHhhhhhhh
Q 006698 514 SRVVLLDVVWNPFVERQAISRAY 536 (635)
Q Consensus 514 ~~vi~~d~~wnp~~~~Qa~gR~~ 536 (635)
.|| ++ |-++..+.||+||++
T Consensus 338 -~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 338 -WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -eEE-EC-CCCHHHHhhhcccCC
Confidence 565 56 678999999999974
No 74
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.83 E-value=2.6e-19 Score=196.15 Aligned_cols=314 Identities=19% Similarity=0.158 Sum_probs=195.9
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLT 147 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~q 147 (635)
+|+|+|++++...+. ++.+++++.+||+|||++|..++...+..+ ..+++.||| ++|..+
T Consensus 31 el~~~qq~av~~~~~------------------~~~N~li~aPTgsGKTlIA~lai~~~l~~~-~~k~vYivPlkALa~E 91 (766)
T COG1204 31 ELFNPQQEAVEKGLL------------------SDENVLISAPTGSGKTLIALLAILSTLLEG-GGKVVYIVPLKALAEE 91 (766)
T ss_pred HhhHHHHHHhhcccc------------------CCCcEEEEcCCCCchHHHHHHHHHHHHHhc-CCcEEEEeChHHHHHH
Confidence 899999999976543 257999999999999999998887766655 568899999 899999
Q ss_pred HHHHHHHhc-CCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhh
Q 006698 148 WEEEFKKWG-IDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELS 226 (635)
Q Consensus 148 W~~E~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~ 226 (635)
-.+|+.+|. .+++|....+...... .|...++|+|+||+.+-...+....
T Consensus 92 k~~~~~~~~~~GirV~~~TgD~~~~~----------------------------~~l~~~~ViVtT~EK~Dsl~R~~~~- 142 (766)
T COG1204 92 KYEEFSRLEELGIRVGISTGDYDLDD----------------------------ERLARYDVIVTTPEKLDSLTRKRPS- 142 (766)
T ss_pred HHHHhhhHHhcCCEEEEecCCcccch----------------------------hhhccCCEEEEchHHhhHhhhcCcc-
Confidence 999998552 3566666655332222 1246789999999998877665221
Q ss_pred hhhccCCCEEEEeCCCcCCCc-c-----cHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhh
Q 006698 227 GILLDLPGLFVFDEGHTPRND-D-----TCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300 (635)
Q Consensus 227 ~~~~~~~~~vIvDEaH~~kn~-~-----s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~ 300 (635)
.....++||+||+|.+... . +-.++....-..-+.++||||- .++.|+. .|++.....
T Consensus 143 --~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATl--pN~~evA---~wL~a~~~~--------- 206 (766)
T COG1204 143 --WIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATL--PNAEEVA---DWLNAKLVE--------- 206 (766)
T ss_pred --hhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeec--CCHHHHH---HHhCCcccc---------
Confidence 3345699999999998664 1 2222222222335789999994 2333332 222221100
Q ss_pred hhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHH
Q 006698 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFV 380 (635)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~ 380 (635)
..+.|.-+++ ..|..... ....-..
T Consensus 207 -------------------------------~~~rp~~l~~-------~v~~~~~~-~~~~~~~---------------- 231 (766)
T COG1204 207 -------------------------------SDWRPVPLRR-------GVPYVGAF-LGADGKK---------------- 231 (766)
T ss_pred -------------------------------cCCCCccccc-------CCccceEE-EEecCcc----------------
Confidence 0000000000 01100000 0000000
Q ss_pred HHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHh
Q 006698 381 ELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRH 458 (635)
Q Consensus 381 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~ 458 (635)
. .....+...+.+++..+ .+..++||++++.......+.|..
T Consensus 232 ----------------------------k--------~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~ 275 (766)
T COG1204 232 ----------------------------K--------TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRI 275 (766)
T ss_pred ----------------------------c--------cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHH
Confidence 0 00001112222333322 788999999998877777766663
Q ss_pred hhc------------c--c--C----------------CceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCccc
Q 006698 459 RFN------------W--R--E----------------GQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCE 506 (635)
Q Consensus 459 ~~~------------~--~--~----------------g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~ 506 (635)
.+. + . . ...+.+-|.+++.++|+-+-+.|+. +.++|++ ||.+.+.
T Consensus 276 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~--g~ikVlv-~TpTLA~ 352 (766)
T COG1204 276 KMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRK--GKIKVLV-STPTLAA 352 (766)
T ss_pred HHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhc--CCceEEE-echHHhh
Confidence 110 0 0 0 0223456778899999999999998 7788887 6999999
Q ss_pred ccccccCCeEEE-----eC-----CCCChhhHHhhhhhhhhcCCc
Q 006698 507 GINLVGASRVVL-----LD-----VVWNPFVERQAISRAYRLGQK 541 (635)
Q Consensus 507 GlnL~~a~~vi~-----~d-----~~wnp~~~~Qa~gR~~R~GQ~ 541 (635)
|+||+ |.+||+ || -+-++..+.|..||++|.|=.
T Consensus 353 GVNLP-A~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d 396 (766)
T COG1204 353 GVNLP-ARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYD 396 (766)
T ss_pred hcCCc-ceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcC
Confidence 99999 555554 44 334677899999999999854
No 75
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.83 E-value=8.6e-19 Score=188.53 Aligned_cols=111 Identities=16% Similarity=0.092 Sum_probs=94.2
Q ss_pred cchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 006698 421 GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498 (635)
Q Consensus 421 s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll 498 (635)
..|..++.+.+... .+.++||||++....+.+...|.+. |+++..++|.+...++..+...|+. + .|+
T Consensus 407 ~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~-----gi~~~~L~a~~~~~E~~ii~~ag~~--g--~Vl- 476 (762)
T TIGR03714 407 PEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLRE-----GIPHNLLNAQNAAKEAQIIAEAGQK--G--AVT- 476 (762)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHC-----CCCEEEecCCChHHHHHHHHHcCCC--C--eEE-
Confidence 45888888877664 7899999999999999999999987 9999999999988777666666654 3 455
Q ss_pred EccCCcccccccc---------cCCeEEEeCCCCChhhHHhhhhhhhhcCCcc
Q 006698 499 ASTKACCEGINLV---------GASRVVLLDVVWNPFVERQAISRAYRLGQKR 542 (635)
Q Consensus 499 ~st~~~~~GlnL~---------~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~ 542 (635)
++|+.+|.|+|+. +.++|+.+++|-+... .|+.||++|.|..=
T Consensus 477 IATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G 528 (762)
T TIGR03714 477 VATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPG 528 (762)
T ss_pred EEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCce
Confidence 5799999999999 8899999999977655 99999999999653
No 76
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=2.8e-19 Score=176.34 Aligned_cols=130 Identities=14% Similarity=0.210 Sum_probs=109.5
Q ss_pred hHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccC
Q 006698 423 KTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTK 502 (635)
Q Consensus 423 K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~ 502 (635)
+-..|..++...-..++|||.+....+..+.-.|.-. |+++.-+||+.++.+|.+.++.|++ ..+.||| +|+
T Consensus 413 Rea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLl-----gl~agElHGsLtQ~QRlesL~kFk~--~eidvLi-aTD 484 (691)
T KOG0338|consen 413 REAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLL-----GLKAGELHGSLTQEQRLESLEKFKK--EEIDVLI-ATD 484 (691)
T ss_pred cHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHh-----hchhhhhcccccHHHHHHHHHHHHh--ccCCEEE-Eec
Confidence 3344555555556789999999999999988888776 9999999999999999999999998 6688888 699
Q ss_pred CcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHH
Q 006698 503 ACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQA 564 (635)
Q Consensus 503 ~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~ 564 (635)
+++.|||+.+..+||+|+.|-+...|.+|+||..|.|. .-+-+.|+.++ |.+++.-..
T Consensus 485 vAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGR--aGrsVtlvgE~--dRkllK~ii 542 (691)
T KOG0338|consen 485 VASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGR--AGRSVTLVGES--DRKLLKEII 542 (691)
T ss_pred hhhccCCccceeEEEeccCchhHHHHHHHhhhhhhccc--CcceEEEeccc--cHHHHHHHH
Confidence 99999999999999999999999999999999999984 45556678777 666655443
No 77
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=5.3e-19 Score=167.14 Aligned_cols=333 Identities=18% Similarity=0.244 Sum_probs=210.0
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCc-EEEeC-ccch
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIAP-RSML 145 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~-LIv~P-~~l~ 145 (635)
++.-|-|..++..+++ ++.||=+.-+|+|||..-..-+..-+...|.+-. ||+.| .-+.
T Consensus 28 ~~pTpiQ~~cIpkILe-------------------Grdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA 88 (442)
T KOG0340|consen 28 KKPTPIQQACIPKILE-------------------GRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELA 88 (442)
T ss_pred CCCCchHhhhhHHHhc-------------------ccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHH
Confidence 3577899999988875 7899999999999995433334344444454443 99999 5566
Q ss_pred HHHHHHHHHhcC--CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcch
Q 006698 146 LTWEEEFKKWGI--DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD 223 (635)
Q Consensus 146 ~qW~~E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~ 223 (635)
.|-.+.|.-.+. ++++.++.+.. .. . ... .......++|++|++.+..+....
T Consensus 89 ~QiaEQF~alGk~l~lK~~vivGG~-----d~--i--~qa----------------~~L~~rPHvVvatPGRlad~l~sn 143 (442)
T KOG0340|consen 89 LQIAEQFIALGKLLNLKVSVIVGGT-----DM--I--MQA----------------AILSDRPHVVVATPGRLADHLSSN 143 (442)
T ss_pred HHHHHHHHHhcccccceEEEEEccH-----HH--h--hhh----------------hhcccCCCeEecCccccccccccC
Confidence 777777765543 23333332211 10 0 000 011356789999998877665542
Q ss_pred -hhhhhhccCCCEEEEeCCCcCCCcccHHHHHHH----hcc-cCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHH
Q 006698 224 -ELSGILLDLPGLFVFDEGHTPRNDDTCMFKALS----RIK-TRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297 (635)
Q Consensus 224 -~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~----~l~-~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~ 297 (635)
...........++|+|||.++-+.. ....+. .++ .+..+++|||- .+...+++.
T Consensus 144 ~~~~~~~~~rlkflVlDEADrvL~~~--f~d~L~~i~e~lP~~RQtLlfSATi-td~i~ql~~----------------- 203 (442)
T KOG0340|consen 144 LGVCSWIFQRLKFLVLDEADRVLAGC--FPDILEGIEECLPKPRQTLLFSATI-TDTIKQLFG----------------- 203 (442)
T ss_pred CccchhhhhceeeEEecchhhhhccc--hhhHHhhhhccCCCccceEEEEeeh-hhHHHHhhc-----------------
Confidence 1222333445789999999987642 333333 233 34789999994 111211110
Q ss_pred hhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhh
Q 006698 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVK 377 (635)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~ 377 (635)
.+...+ +.... ...| -.+....+|..
T Consensus 204 ---~~i~k~------------------------------~a~~~------e~~~----------~vstvetL~q~----- 229 (442)
T KOG0340|consen 204 ---CPITKS------------------------------IAFEL------EVID----------GVSTVETLYQG----- 229 (442)
T ss_pred ---CCcccc------------------------------cceEE------eccC----------CCCchhhhhhh-----
Confidence 000000 00000 0000 00000011110
Q ss_pred hHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc---CCCeEEEEcCChhHHHHHHH
Q 006698 378 SFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIME 454 (635)
Q Consensus 378 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~---~~~kviIFs~~~~~~~~l~~ 454 (635)
........|-..|..+|... +...++||+|.+.+...|..
T Consensus 230 -------------------------------------yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~ 272 (442)
T KOG0340|consen 230 -------------------------------------YILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSM 272 (442)
T ss_pred -------------------------------------eeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHH
Confidence 01111233555556666554 46789999999999999999
Q ss_pred HHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhh
Q 006698 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISR 534 (635)
Q Consensus 455 ~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR 534 (635)
.|+.. ++.+..+|+.+++++|-..+.+|+. +.++++| +|++++.|||++..+.||++|.|-.|..|++|+||
T Consensus 273 ~l~~l-----e~r~~~lHs~m~Q~eR~~aLsrFrs--~~~~ili-aTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGR 344 (442)
T KOG0340|consen 273 TLKNL-----EVRVVSLHSQMPQKERLAALSRFRS--NAARILI-ATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGR 344 (442)
T ss_pred HHhhh-----ceeeeehhhcchHHHHHHHHHHHhh--cCccEEE-EechhhcCCCCCceeEEEecCCCCCHHHHHHhhcc
Confidence 99988 9999999999999999999999997 5578877 59999999999999999999999999999999999
Q ss_pred hhhcCCcc-eEEEEEEEeCCChH--HHHHHHHHHh
Q 006698 535 AYRLGQKR-VVHVYHLITSETLE--WDKLRRQARK 566 (635)
Q Consensus 535 ~~R~GQ~~-~V~vy~li~~~tiE--e~i~~~~~~K 566 (635)
..|.|..- .+- ++++-.+| ..|-+....|
T Consensus 345 tARAGR~G~aiS---ivt~rDv~l~~aiE~~igkK 376 (442)
T KOG0340|consen 345 TARAGRKGMAIS---IVTQRDVELLQAIEEEIGKK 376 (442)
T ss_pred hhcccCCcceEE---EechhhHHHHHHHHHHHhcc
Confidence 99988654 333 44544444 2333444444
No 78
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=7.8e-19 Score=174.28 Aligned_cols=121 Identities=15% Similarity=0.234 Sum_probs=95.0
Q ss_pred HHhcCCCeEEEEcCChhHHHHHHHHHHhhhcc-----------------cCCceEEEEeCCCCHHHHHHHHHHhcCCCCC
Q 006698 431 LELSTNEKVLVFSQYIEPLTLIMEQLRHRFNW-----------------REGQEVLYMDGKQDVKKRQSSINVLNDPSSQ 493 (635)
Q Consensus 431 l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~-----------------~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~ 493 (635)
++.....|+|||-...+.++.=..+|...... .-+.++.+++|+|++++|...+..|....
T Consensus 420 ~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~-- 497 (708)
T KOG0348|consen 420 VKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSR-- 497 (708)
T ss_pred hhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhcccc--
Confidence 33337779999999988888766666544221 12467899999999999999999999732
Q ss_pred cEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChH
Q 006698 494 ARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556 (635)
Q Consensus 494 ~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiE 556 (635)
--||| ||++++.||||+....||-||+|.++..|.+|+||..|+|-+-.- .-|+.+...|
T Consensus 498 ~~VLL-cTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~a--lLfL~P~Eae 557 (708)
T KOG0348|consen 498 RAVLL-CTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEA--LLFLLPSEAE 557 (708)
T ss_pred ceEEE-ehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCce--EEEecccHHH
Confidence 23455 799999999999999999999999999999999999999965433 3355555555
No 79
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.82 E-value=1.7e-18 Score=192.49 Aligned_cols=343 Identities=20% Similarity=0.186 Sum_probs=223.6
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~ 146 (635)
..||+||.+|++.+.+ ++++++.-.||+|||...+..+...+-..+..+.|+|=| ++|..
T Consensus 69 ~~lY~HQ~~A~~~~~~-------------------G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~ 129 (851)
T COG1205 69 ERLYSHQVDALRLIRE-------------------GRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALAN 129 (851)
T ss_pred ccccHHHHHHHHHHHC-------------------CCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHh
Confidence 3499999999999854 689999999999999888777777666677778899999 88888
Q ss_pred HHHHHHHHhcCCCc----ccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHH-hhc
Q 006698 147 TWEEEFKKWGIDIP----FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEK-LVS 221 (635)
Q Consensus 147 qW~~E~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~-~~~ 221 (635)
...+.+.++..+++ +..++| ......... -..+..+|++|+|+++.. +++
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~G-----dt~~~~r~~--------------------~~~~pp~IllTNpdMLh~~llr 184 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTG-----DTPPEERRA--------------------IIRNPPDILLTNPDMLHYLLLR 184 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecC-----CCChHHHHH--------------------HHhCCCCEEEeCHHHHHHHhcc
Confidence 88999998854433 333443 222111100 013678999999999987 333
Q ss_pred chhhhhhhccCCCEEEEeCCCcCCC-cccHHHHHHHhc--------ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhh
Q 006698 222 GDELSGILLDLPGLFVFDEGHTPRN-DDTCMFKALSRI--------KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEV 292 (635)
Q Consensus 222 ~~~~~~~~~~~~~~vIvDEaH~~kn-~~s~~~~~l~~l--------~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~ 292 (635)
......++...+.+|||||+|.+++ .+|...-.+++| .....++.|||- .++.|+..
T Consensus 185 ~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~--~np~e~~~------------ 250 (851)
T COG1205 185 NHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATL--ANPGEFAE------------ 250 (851)
T ss_pred CcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccc--cChHHHHH------------
Confidence 3333334444589999999999987 467777777766 245679999994 11221110
Q ss_pred HHHHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCC-cHHHHHHHH
Q 006698 293 LRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQP-DEFQKRLCK 371 (635)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~-s~~q~~~y~ 371 (635)
.+. ...-.. . ......|....+++.-.+ .......
T Consensus 251 -----~l~-------------------------------~~~f~~----~--v~~~g~~~~~~~~~~~~p~~~~~~~~-- 286 (851)
T COG1205 251 -----ELF-------------------------------GRDFEV----P--VDEDGSPRGLRYFVRREPPIRELAES-- 286 (851)
T ss_pred -----Hhc-------------------------------CCccee----e--ccCCCCCCCceEEEEeCCcchhhhhh--
Confidence 000 000000 0 000122322222222221 1111000
Q ss_pred HHhhhhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc--CCCeEEEEcCChhHH
Q 006698 372 AVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS--TNEKVLVFSQYIEPL 449 (635)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~--~~~kviIFs~~~~~~ 449 (635)
....+...+..++... .+-|.|+|+.+...+
T Consensus 287 -----------------------------------------------~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~ 319 (851)
T COG1205 287 -----------------------------------------------IRRSALAELATLAALLVRNGIQTLVFFRSRKQV 319 (851)
T ss_pred -----------------------------------------------cccchHHHHHHHHHHHHHcCceEEEEEehhhhh
Confidence 0011222233333333 789999999999999
Q ss_pred HHHHHHHHhhhcccCC----ceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCC-C
Q 006698 450 TLIMEQLRHRFNWREG----QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVW-N 524 (635)
Q Consensus 450 ~~l~~~L~~~~~~~~g----~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~w-n 524 (635)
+.+.......+... + ..+....|++...+|..+...|+. ++..+++ +|.++..|+++.+.+.||..-.|- +
T Consensus 320 e~~~~~~~~~~~~~-~~~l~~~v~~~~~~~~~~er~~ie~~~~~--g~~~~~~-st~AlelgidiG~ldavi~~g~P~~s 395 (851)
T COG1205 320 ELLYLSPRRRLVRE-GGKLLDAVSTYRAGLHREERRRIEAEFKE--GELLGVI-ATNALELGIDIGSLDAVIAYGYPGVS 395 (851)
T ss_pred hhhhhchhHHHhhc-chhhhhheeeccccCCHHHHHHHHHHHhc--CCccEEe-cchhhhhceeehhhhhHhhcCCCCch
Confidence 88862222221110 3 568889999999999999999998 5566666 899999999999999999999888 7
Q ss_pred hhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHH
Q 006698 525 PFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQAR 565 (635)
Q Consensus 525 p~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~ 565 (635)
.....|+.||++|.||.-.+ +...-.+.+|..+...-+.
T Consensus 396 ~~~~~Q~~GRaGR~~~~~l~--~~v~~~~~~d~yy~~~p~~ 434 (851)
T COG1205 396 VLSFRQRAGRAGRRGQESLV--LVVLRSDPLDSYYLRHPEE 434 (851)
T ss_pred HHHHHHhhhhccCCCCCceE--EEEeCCCccchhhhhCcHh
Confidence 89999999999999965422 2233377788777654433
No 80
>PRK09401 reverse gyrase; Reviewed
Probab=99.81 E-value=2.3e-18 Score=197.47 Aligned_cols=103 Identities=13% Similarity=0.127 Sum_probs=84.9
Q ss_pred hHHHHHHHHHhcCCCeEEEEcCChhH---HHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEE
Q 006698 423 KTRFLLILLELSTNEKVLVFSQYIEP---LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499 (635)
Q Consensus 423 K~~~l~~~l~~~~~~kviIFs~~~~~---~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~ 499 (635)
|...|.+++... +.++|||++.... ++.+.+.|... |+++..++|++ .+.+++|.+ |+++|||+
T Consensus 316 k~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~-----gi~v~~~hg~l-----~~~l~~F~~--G~~~VLVa 382 (1176)
T PRK09401 316 SVEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDL-----GINAELAISGF-----ERKFEKFEE--GEVDVLVG 382 (1176)
T ss_pred HHHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHC-----CCcEEEEeCcH-----HHHHHHHHC--CCCCEEEE
Confidence 566677777654 3589999998777 99999999987 99999999998 234599998 67889997
Q ss_pred c---cCCccccccccc-CCeEEEeCCCC------ChhhHHhhhhhhhhc
Q 006698 500 S---TKACCEGINLVG-ASRVVLLDVVW------NPFVERQAISRAYRL 538 (635)
Q Consensus 500 s---t~~~~~GlnL~~-a~~vi~~d~~w------np~~~~Qa~gR~~R~ 538 (635)
+ |++++.|||++. ...||||+.|- ....+..++||+..+
T Consensus 383 tas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 383 VASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred ecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 5 789999999998 89999999997 556677888888543
No 81
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.81 E-value=4.8e-19 Score=179.15 Aligned_cols=304 Identities=21% Similarity=0.239 Sum_probs=204.0
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHHhC-CCCCcEEEeC-ccchHHHHHHHHHhcC---CCcccccCCCCCcCcccchhhH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMKLH-PRCRPVIIAP-RSMLLTWEEEFKKWGI---DIPFYNLNKPELSGKENNGAVA 179 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~~~-~~~~~LIv~P-~~l~~qW~~E~~~~~~---~~~v~~~~~~~~~~~~~~~~~~ 179 (635)
..|+-.--|+|||++-..++..-+... ...-.+||+| .-+--|-++-+.+.++ +++..++-|......+..+.
T Consensus 64 DliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-- 141 (980)
T KOG4284|consen 64 DLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-- 141 (980)
T ss_pred ceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh--
Confidence 568888899999976544333322222 2223499999 5566788888888776 34445554433333222211
Q ss_pred hHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhhhhccCCCEEEEeCCCcCCCccc---HHHHHHH
Q 006698 180 LMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDT---CMFKALS 256 (635)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~s---~~~~~l~ 256 (635)
+...|+|-|+..+..+... ..+.....+++|+|||..+-...| .....+.
T Consensus 142 ------------------------k~~rIvIGtPGRi~qL~el---~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~ 194 (980)
T KOG4284|consen 142 ------------------------KQTRIVIGTPGRIAQLVEL---GAMNMSHVRLFVLDEADKLMDTESFQDDINIIIN 194 (980)
T ss_pred ------------------------hhceEEecCchHHHHHHHh---cCCCccceeEEEeccHHhhhchhhHHHHHHHHHH
Confidence 3567999999888776633 233344578999999999876544 3445555
Q ss_pred hc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhc
Q 006698 257 RI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIA 335 (635)
Q Consensus 257 ~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 335 (635)
.| +.+.+++.|||-- ..|-++ |.+.++
T Consensus 195 slP~~rQv~a~SATYp----~nLdn~------------------------------------------------Lsk~mr 222 (980)
T KOG4284|consen 195 SLPQIRQVAAFSATYP----RNLDNL------------------------------------------------LSKFMR 222 (980)
T ss_pred hcchhheeeEEeccCc----hhHHHH------------------------------------------------HHHHhc
Confidence 66 6677899999941 111111 111111
Q ss_pred -chhhhcccccccccCCCceEEEE-EeCCcHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhh
Q 006698 336 -PFVNVHKGTVLQESLPGLRHSVV-ILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLAR 413 (635)
Q Consensus 336 -~~~~rr~~~~~~~~lp~~~~~~v-~~~~s~~q~~~y~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~ 413 (635)
|.+.|....+. .|=....+++ .+......+
T Consensus 223 dp~lVr~n~~d~--~L~GikQyv~~~~s~nnsve---------------------------------------------- 254 (980)
T KOG4284|consen 223 DPALVRFNADDV--QLFGIKQYVVAKCSPNNSVE---------------------------------------------- 254 (980)
T ss_pred ccceeecccCCc--eeechhheeeeccCCcchHH----------------------------------------------
Confidence 12222222222 1111111111 111111000
Q ss_pred cccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCC
Q 006698 414 LKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQ 493 (635)
Q Consensus 414 ~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~ 493 (635)
...-|++.|..++...+-...||||+...-++-++.+|... |+++..|.|.|++.+|..+++.+++ -.
T Consensus 255 -----emrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ss-----G~d~~~ISgaM~Q~~Rl~a~~~lr~--f~ 322 (980)
T KOG4284|consen 255 -----EMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSS-----GLDVTFISGAMSQKDRLLAVDQLRA--FR 322 (980)
T ss_pred -----HHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhcc-----CCCeEEeccccchhHHHHHHHHhhh--ce
Confidence 01237788888888888899999999999999999999987 9999999999999999999999997 45
Q ss_pred cEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeC
Q 006698 494 ARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552 (635)
Q Consensus 494 ~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~ 552 (635)
++||+ ||+..+.|||-..+|.||++|+|-+-..|.+||||++|.|.. -..|. |++.
T Consensus 323 ~rILV-sTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~-G~aVT-~~~~ 378 (980)
T KOG4284|consen 323 VRILV-STDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAH-GAAVT-LLED 378 (980)
T ss_pred EEEEE-ecchhhccCCccccceEEecCCCcchHHHHHHhhhccccccc-ceeEE-Eecc
Confidence 78777 899999999999999999999999999999999999999964 34433 3443
No 82
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=8.5e-18 Score=160.03 Aligned_cols=121 Identities=23% Similarity=0.370 Sum_probs=101.9
Q ss_pred chHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEcc
Q 006698 422 IKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAST 501 (635)
Q Consensus 422 ~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st 501 (635)
.|.++|.++-....-...||||+.+.++..|...|.+. |..+..++|.++..+|..++++|+. |..+||| +|
T Consensus 316 ~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~-----Gh~V~~l~G~l~~~~R~~ii~~Fr~--g~~kVLi-tT 387 (477)
T KOG0332|consen 316 DKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAE-----GHQVSLLHGDLTVEQRAAIIDRFRE--GKEKVLI-TT 387 (477)
T ss_pred hHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhc-----CceeEEeeccchhHHHHHHHHHHhc--CcceEEE-Ee
Confidence 36666666555444457899999999999999999997 9999999999999999999999998 5567777 79
Q ss_pred CCcccccccccCCeEEEeCCCC------ChhhHHhhhhhhhhcCCcceEEEEEEEeC
Q 006698 502 KACCEGINLVGASRVVLLDVVW------NPFVERQAISRAYRLGQKRVVHVYHLITS 552 (635)
Q Consensus 502 ~~~~~GlnL~~a~~vi~~d~~w------np~~~~Qa~gR~~R~GQ~~~V~vy~li~~ 552 (635)
.+++.|||.+..+.||+||+|- .+..|.+||||.+|.|.+ --.++|+-.
T Consensus 388 nV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkk--G~a~n~v~~ 442 (477)
T KOG0332|consen 388 NVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKK--GLAINLVDD 442 (477)
T ss_pred chhhcccccceEEEEEecCCccccCCCCCHHHHHHHhccccccccc--ceEEEeecc
Confidence 9999999999999999999984 678999999999999954 333445543
No 83
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=5.2e-18 Score=167.27 Aligned_cols=306 Identities=21% Similarity=0.234 Sum_probs=203.8
Q ss_pred CCceEEeCCCCchHHHHHHHHHH-HHHH---hC-CCCCc-EEEeC-ccchHHHHHHHHHhc--CCCcccccCCCCCcCcc
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQ-AYMK---LH-PRCRP-VIIAP-RSMLLTWEEEFKKWG--IDIPFYNLNKPELSGKE 173 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~-~~~~---~~-~~~~~-LIv~P-~~l~~qW~~E~~~~~--~~~~v~~~~~~~~~~~~ 173 (635)
++.+|=..-+|+|||...+--+. +.+. .. ..+|+ ||+|| ..+..|-..|.++|+ .+++++.+.+.......
T Consensus 260 grdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ 339 (731)
T KOG0339|consen 260 GRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQ 339 (731)
T ss_pred cccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHH
Confidence 45566667789999943332111 1111 12 22344 89999 778899999999984 35555554442211111
Q ss_pred cchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhhhhccCCCEEEEeCCCcCCCc--ccHH
Q 006698 174 NNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND--DTCM 251 (635)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~--~s~~ 251 (635)
...+ ...+.+|++|++.+..++.. +........++|+|||.++-.- ..+.
T Consensus 340 -------~k~L------------------k~g~EivVaTPgRlid~Vkm---Katn~~rvS~LV~DEadrmfdmGfe~qV 391 (731)
T KOG0339|consen 340 -------SKEL------------------KEGAEIVVATPGRLIDMVKM---KATNLSRVSYLVLDEADRMFDMGFEPQV 391 (731)
T ss_pred -------HHhh------------------hcCCeEEEechHHHHHHHHh---hcccceeeeEEEEechhhhhccccHHHH
Confidence 1111 24778999999988776633 2233344689999999998543 2333
Q ss_pred HHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHH
Q 006698 252 FKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKEL 330 (635)
Q Consensus 252 ~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 330 (635)
......+ +.+..|+.|||- . .......
T Consensus 392 rSI~~hirpdrQtllFsaTf-----------------------------~-----------------------~kIe~la 419 (731)
T KOG0339|consen 392 RSIKQHIRPDRQTLLFSATF-----------------------------K-----------------------KKIEKLA 419 (731)
T ss_pred HHHHhhcCCcceEEEeeccc-----------------------------h-----------------------HHHHHHH
Confidence 3334444 556689999993 0 0011112
Q ss_pred HHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCCCCCccccccCccchHH
Q 006698 331 KEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAK 410 (635)
Q Consensus 331 ~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~ 410 (635)
+..|..-+.+... ++. .-..-...+|.+-.++
T Consensus 420 rd~L~dpVrvVqg-~vg-ean~dITQ~V~V~~s~---------------------------------------------- 451 (731)
T KOG0339|consen 420 RDILSDPVRVVQG-EVG-EANEDITQTVSVCPSE---------------------------------------------- 451 (731)
T ss_pred HHHhcCCeeEEEe-ehh-ccccchhheeeeccCc----------------------------------------------
Confidence 2222222222211 221 1112223333333222
Q ss_pred HhhcccCccccchHHHHHHHHHhc-CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcC
Q 006698 411 LARLKLDPEAGIKTRFLLILLELS-TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND 489 (635)
Q Consensus 411 l~~~~~~~~~s~K~~~l~~~l~~~-~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~ 489 (635)
..|+.+|..-|... ...+||||..-...++.|...|... |+.+..++|++.+.+|.+.+.+|+.
T Consensus 452 ----------~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk-----~~~v~llhgdkdqa~rn~~ls~fKk 516 (731)
T KOG0339|consen 452 ----------EKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLK-----GFNVSLLHGDKDQAERNEVLSKFKK 516 (731)
T ss_pred ----------HHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccc-----cceeeeecCchhhHHHHHHHHHHhh
Confidence 34778887766655 6679999999999999999999887 9999999999999999999999997
Q ss_pred CCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChH
Q 006698 490 PSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556 (635)
Q Consensus 490 ~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiE 556 (635)
+...|++ .|++++.|+++....+||+||.--....+.||+||.+|-|-+ -..|.|+++...+
T Consensus 517 --k~~~Vlv-atDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 517 --KRKPVLV-ATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred --cCCceEE-EeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 4566777 599999999999999999999999999999999999999965 6678999876544
No 84
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=6.7e-18 Score=162.28 Aligned_cols=302 Identities=18% Similarity=0.203 Sum_probs=195.3
Q ss_pred CCceEEeCCCCchHHHHHHHH--HHH-----HHHhCCCCCcEEEeC-ccchHHHHHHHHHhcC-CC-cccccCCCCCcCc
Q 006698 103 GNGCIISHAPGTGKTGLTLVF--LQA-----YMKLHPRCRPVIIAP-RSMLLTWEEEFKKWGI-DI-PFYNLNKPELSGK 172 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~--i~~-----~~~~~~~~~~LIv~P-~~l~~qW~~E~~~~~~-~~-~v~~~~~~~~~~~ 172 (635)
+..+|-...+|+|||+.-+.- ++- .+...+...+|++.| ..|..|-+-|..++-. .+ ++..+.+ .
T Consensus 257 G~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygg-----g 331 (629)
T KOG0336|consen 257 GIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGG-----G 331 (629)
T ss_pred CcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecC-----C
Confidence 568899999999999654421 111 111223345699999 5666777778777632 22 2233322 2
Q ss_pred ccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhhhhccCCCEEEEeCCCcCCC--cccH
Q 006698 173 ENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRN--DDTC 250 (635)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn--~~s~ 250 (635)
...... . ....+.+++|.|+..|..+..... +......++|+|||.++.. ...+
T Consensus 332 nR~eqi---e------------------~lkrgveiiiatPgrlndL~~~n~---i~l~siTYlVlDEADrMLDMgFEpq 387 (629)
T KOG0336|consen 332 NRNEQI---E------------------DLKRGVEIIIATPGRLNDLQMDNV---INLASITYLVLDEADRMLDMGFEPQ 387 (629)
T ss_pred CchhHH---H------------------HHhcCceEEeeCCchHhhhhhcCe---eeeeeeEEEEecchhhhhcccccHH
Confidence 221111 1 113567899999998887654421 1223357899999999865 4567
Q ss_pred HHHHHHhcc-cCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHH
Q 006698 251 MFKALSRIK-TRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKE 329 (635)
Q Consensus 251 ~~~~l~~l~-~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (635)
..+.+..++ .+..++-|||- ++-
T Consensus 388 IrkilldiRPDRqtvmTSATW----P~~---------------------------------------------------- 411 (629)
T KOG0336|consen 388 IRKILLDIRPDRQTVMTSATW----PEG---------------------------------------------------- 411 (629)
T ss_pred HHHHhhhcCCcceeeeecccC----chH----------------------------------------------------
Confidence 888888884 45566667773 000
Q ss_pred HHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCCCCCccccccCccchH
Q 006698 330 LKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSA 409 (635)
Q Consensus 330 l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~ 409 (635)
.+++...| .++-+ ..++-.+++. +.+
T Consensus 412 VrrLa~sY----~Kep~-------~v~vGsLdL~--------------------------a~~----------------- 437 (629)
T KOG0336|consen 412 VRRLAQSY----LKEPM-------IVYVGSLDLV--------------------------AVK----------------- 437 (629)
T ss_pred HHHHHHHh----hhCce-------EEEeccccee--------------------------eee-----------------
Confidence 00111111 00000 0000001100 000
Q ss_pred HHhhcccCccccchHHHHHHHHHhc-CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhc
Q 006698 410 KLARLKLDPEAGIKTRFLLILLELS-TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN 488 (635)
Q Consensus 410 ~l~~~~~~~~~s~K~~~l~~~l~~~-~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~ 488 (635)
...+....+..+.|+..+..++... +..|+|||+....++|-|..-|.-. |+....+||+-.+.+|+.+++.|+
T Consensus 438 sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~-----gi~~q~lHG~r~Q~DrE~al~~~k 512 (629)
T KOG0336|consen 438 SVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLK-----GISSQSLHGNREQSDREMALEDFK 512 (629)
T ss_pred eeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhc-----ccchhhccCChhhhhHHHHHHhhh
Confidence 0001111223345666666666666 8899999999999998888777765 999999999999999999999999
Q ss_pred CCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCC
Q 006698 489 DPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553 (635)
Q Consensus 489 ~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~ 553 (635)
. |.++||+ .|+.++.|||+.+..+|++||.|-|-..|.+|+||++|.|.+- .-..|++.+
T Consensus 513 s--G~vrILv-aTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G--~sis~lt~~ 572 (629)
T KOG0336|consen 513 S--GEVRILV-ATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTG--TSISFLTRN 572 (629)
T ss_pred c--CceEEEE-EechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCc--ceEEEEehh
Confidence 8 7799888 5999999999999999999999999999999999999999653 233455554
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.78 E-value=8.7e-17 Score=177.03 Aligned_cols=98 Identities=18% Similarity=0.219 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhhhcccCCceEEEEeCCCC--HHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCC---
Q 006698 448 PLTLIMEQLRHRFNWREGQEVLYMDGKQD--VKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVV--- 522 (635)
Q Consensus 448 ~~~~l~~~L~~~~~~~~g~~~~~i~G~~~--~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~--- 522 (635)
-.+.+++.|.+.|+ +.++.++||+++ .++++++++.|.+ +++.||| +|+..+.|+|+++.+.|+++|.+
T Consensus 438 G~e~~~e~l~~~fp---~~~v~~~~~d~~~~~~~~~~~l~~f~~--g~~~ILV-gT~~iakG~d~p~v~lV~il~aD~~l 511 (679)
T PRK05580 438 GTERLEEELAELFP---EARILRIDRDTTRRKGALEQLLAQFAR--GEADILI-GTQMLAKGHDFPNVTLVGVLDADLGL 511 (679)
T ss_pred cHHHHHHHHHHhCC---CCcEEEEeccccccchhHHHHHHHHhc--CCCCEEE-EChhhccCCCCCCcCEEEEEcCchhc
Confidence 46778888888875 889999999986 4678999999998 5677777 69999999999999999887655
Q ss_pred CCh---------hhHHhhhhhhhhcCCcceEEEEEEEe
Q 006698 523 WNP---------FVERQAISRAYRLGQKRVVHVYHLIT 551 (635)
Q Consensus 523 wnp---------~~~~Qa~gR~~R~GQ~~~V~vy~li~ 551 (635)
..| ..+.|+.||++|.|..-.|.+...-.
T Consensus 512 ~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p 549 (679)
T PRK05580 512 FSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHP 549 (679)
T ss_pred cCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCC
Confidence 223 57899999999987766777665543
No 86
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.78 E-value=4.7e-18 Score=170.20 Aligned_cols=314 Identities=18% Similarity=0.191 Sum_probs=203.8
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHH-HHHHHHHHHhCCCCCcEEEeC-ccch
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLT-LVFLQAYMKLHPRCRPVIIAP-RSML 145 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~a-i~~i~~~~~~~~~~~~LIv~P-~~l~ 145 (635)
.+|.|-|.-+|..-+ -.+.+-++..++++|||+++ +|-+..++. ..++.|++|| ..|-
T Consensus 215 ~eLlPVQ~laVe~GL------------------LeG~nllVVSaTasGKTLIgElAGi~~~l~--~g~KmlfLvPLVALA 274 (830)
T COG1202 215 EELLPVQVLAVEAGL------------------LEGENLLVVSATASGKTLIGELAGIPRLLS--GGKKMLFLVPLVALA 274 (830)
T ss_pred ceecchhhhhhhhcc------------------ccCCceEEEeccCCCcchHHHhhCcHHHHh--CCCeEEEEehhHHhh
Confidence 369999999987532 12678999999999999887 455544433 3568899999 5555
Q ss_pred HHHHHHHHHhcCCCcccc--cCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcch
Q 006698 146 LTWEEEFKKWGIDIPFYN--LNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD 223 (635)
Q Consensus 146 ~qW~~E~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~ 223 (635)
.|=.++|.+-+..+-..+ --|...-+...+.. ......+.||++-||+-+--+.+..
T Consensus 275 NQKy~dF~~rYs~LglkvairVG~srIk~~~~pv---------------------~~~t~~dADIIVGTYEGiD~lLRtg 333 (830)
T COG1202 275 NQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPV---------------------VVDTSPDADIIVGTYEGIDYLLRTG 333 (830)
T ss_pred cchHHHHHHHhhcccceEEEEechhhhcccCCcc---------------------ccCCCCCCcEEEeechhHHHHHHcC
Confidence 666667765443322211 11111111111000 0011357899999999876655442
Q ss_pred hhhhhhccCCCEEEEeCCCcCCCc--ccHHHH---HHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHH
Q 006698 224 ELSGILLDLPGLFVFDEGHTPRND--DTCMFK---ALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297 (635)
Q Consensus 224 ~~~~~~~~~~~~vIvDEaH~~kn~--~s~~~~---~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~ 297 (635)
-.......|||||.|.+... +..+-- -++.+ +....+.||||- .|++|+...+
T Consensus 334 ----~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATV--gNp~elA~~l--------------- 392 (830)
T COG1202 334 ----KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATV--GNPEELAKKL--------------- 392 (830)
T ss_pred ----CcccccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeec--CChHHHHHHh---------------
Confidence 22334689999999998652 232222 23333 557889999994 3444443221
Q ss_pred hhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCC-CceEEEEEeCCcHHHHHHHHHHhhh
Q 006698 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLP-GLRHSVVILQPDEFQKRLCKAVEGV 376 (635)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp-~~~~~~v~~~~s~~q~~~y~~~~~~ 376 (635)
.--...+ +.-| |...+.+.+.-.
T Consensus 393 -------------------------------------~a~lV~y------~~RPVplErHlvf~~~e------------- 416 (830)
T COG1202 393 -------------------------------------GAKLVLY------DERPVPLERHLVFARNE------------- 416 (830)
T ss_pred -------------------------------------CCeeEee------cCCCCChhHeeeeecCc-------------
Confidence 1111111 1112 112233333211
Q ss_pred hhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc--------CCCeEEEEcCChhH
Q 006698 377 KSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS--------TNEKVLVFSQYIEP 448 (635)
Q Consensus 377 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~--------~~~kviIFs~~~~~ 448 (635)
+.|...+..+++.. -..+.|||++++.-
T Consensus 417 --------------------------------------------~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr 452 (830)
T COG1202 417 --------------------------------------------SEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRR 452 (830)
T ss_pred --------------------------------------------hHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhh
Confidence 22333333333321 23478999999999
Q ss_pred HHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEE----eCCCC-
Q 006698 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVL----LDVVW- 523 (635)
Q Consensus 449 ~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~----~d~~w- 523 (635)
...|..+|... |++...+|++++..+|..+-..|.+ +...+++ +|.|.+.|+|++ |+.||| +-..|
T Consensus 453 ~h~lA~~L~~k-----G~~a~pYHaGL~y~eRk~vE~~F~~--q~l~~VV-TTAAL~AGVDFP-ASQVIFEsLaMG~~WL 523 (830)
T COG1202 453 CHELADALTGK-----GLKAAPYHAGLPYKERKSVERAFAA--QELAAVV-TTAALAAGVDFP-ASQVIFESLAMGIEWL 523 (830)
T ss_pred HHHHHHHhhcC-----CcccccccCCCcHHHHHHHHHHHhc--CCcceEe-ehhhhhcCCCCc-hHHHHHHHHHcccccC
Confidence 99999999987 9999999999999999999999998 5577766 799999999999 677776 44445
Q ss_pred ChhhHHhhhhhhhhcCCcceEEEEEEEeC
Q 006698 524 NPFVERQAISRAYRLGQKRVVHVYHLITS 552 (635)
Q Consensus 524 np~~~~Qa~gR~~R~GQ~~~V~vy~li~~ 552 (635)
+|..+.|..||++|.|-...-.||-++-.
T Consensus 524 s~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 524 SVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred CHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 99999999999999998777777777743
No 87
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=6.3e-17 Score=176.03 Aligned_cols=112 Identities=18% Similarity=0.154 Sum_probs=96.5
Q ss_pred cchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 006698 421 GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498 (635)
Q Consensus 421 s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll 498 (635)
..|..++.+.+... .+.++||||++....+.+...|.+. |+++..++|.+...++..+...++. + .|+|
T Consensus 411 ~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~-----gi~~~~L~~~~~~~e~~~i~~ag~~--g--~VlI 481 (790)
T PRK09200 411 DEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEA-----GIPHNLLNAKNAAKEAQIIAEAGQK--G--AVTV 481 (790)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC-----CCCEEEecCCccHHHHHHHHHcCCC--C--eEEE
Confidence 45888888888664 7899999999999999999999997 9999999999887777666666654 3 4554
Q ss_pred EccCCccccccc---ccCC-----eEEEeCCCCChhhHHhhhhhhhhcCCcc
Q 006698 499 ASTKACCEGINL---VGAS-----RVVLLDVVWNPFVERQAISRAYRLGQKR 542 (635)
Q Consensus 499 ~st~~~~~GlnL---~~a~-----~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~ 542 (635)
+|+.+|.|+|+ +... +||++|+|-|+..+.|+.||++|.|+.=
T Consensus 482 -ATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G 532 (790)
T PRK09200 482 -ATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPG 532 (790)
T ss_pred -EccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCe
Confidence 79999999999 4676 9999999999999999999999999763
No 88
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=1.3e-16 Score=169.76 Aligned_cols=129 Identities=22% Similarity=0.224 Sum_probs=100.9
Q ss_pred ccchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEE
Q 006698 420 AGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497 (635)
Q Consensus 420 ~s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vl 497 (635)
...|..+|.+.+... .+.++||||++....+.+...|.+. |+++..++|..+ +|+..+..|....+ .|+
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~-----gi~~~~Lhg~~~--~rE~~ii~~ag~~g--~Vl 525 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREA-----GLPHQVLNAKQD--AEEAAIVARAGQRG--RIT 525 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC-----CCCEEEeeCCcH--HHHHHHHHHcCCCC--cEE
Confidence 345888888888765 4788999999999999999999987 999999999864 56666666664333 455
Q ss_pred EEccCCcccccccc---cCC-----eEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHH
Q 006698 498 LASTKACCEGINLV---GAS-----RVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQ 563 (635)
Q Consensus 498 l~st~~~~~GlnL~---~a~-----~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~ 563 (635)
++|+.+|.|+|+. ... +||++|.|-|...+.|++||++|.|.. -....|++ .|+.++.+.
T Consensus 526 -VATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~--G~s~~~is---~eD~l~~~~ 593 (656)
T PRK12898 526 -VATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDP--GSYEAILS---LEDDLLQSF 593 (656)
T ss_pred -EEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCC--eEEEEEec---hhHHHHHhh
Confidence 4799999999998 443 899999999999999999999999965 33344443 355555443
No 89
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=9.1e-19 Score=163.03 Aligned_cols=134 Identities=19% Similarity=0.265 Sum_probs=112.5
Q ss_pred cchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEc
Q 006698 421 GIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500 (635)
Q Consensus 421 s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~s 500 (635)
+-|+.+|.-++....=...||||+++..++.++..+.+. |+.+..+|.+|.++.|..+...|++ |.|+.++ +
T Consensus 307 ~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITel-----GyscyyiHakM~Q~hRNrVFHdFr~--G~crnLV-c 378 (459)
T KOG0326|consen 307 RQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITEL-----GYSCYYIHAKMAQEHRNRVFHDFRN--GKCRNLV-C 378 (459)
T ss_pred hhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhc-----cchhhHHHHHHHHhhhhhhhhhhhc--cccceee-e
Confidence 446777777776666678999999999999999999998 9999999999999999999999998 7799888 5
Q ss_pred cCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHh
Q 006698 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566 (635)
Q Consensus 501 t~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K 566 (635)
|+....|||+|+.|.||+||.|-|+..|..|+||.+|.|-. --...|++-+ |...+.+.+++
T Consensus 379 tDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhl--GlAInLitye--drf~L~~IE~e 440 (459)
T KOG0326|consen 379 TDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHL--GLAINLITYE--DRFNLYRIEQE 440 (459)
T ss_pred hhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCc--ceEEEEEehh--hhhhHHHHHHH
Confidence 99999999999999999999999999999999999999953 3344566543 23344444444
No 90
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.76 E-value=5.4e-17 Score=179.94 Aligned_cols=110 Identities=20% Similarity=0.279 Sum_probs=93.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCe
Q 006698 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515 (635)
Q Consensus 436 ~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~ 515 (635)
+.++|||+.....++.+.+.|...++ .++.+..++|+++.++|.++++.|.+ +..+|+| +|+.++.|||+.+.++
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~--~~~~v~pLHg~L~~~eq~~~~~~~~~--G~rkVlV-ATnIAErgItIp~V~~ 283 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLD--SDVLICPLYGELSLAAQDRAIKPDPQ--GRRKVVL-ATNIAETSLTIEGIRV 283 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcC--CCcEEEEecCCCCHHHHHHHHhhccc--CCeEEEE-ecchHhhcccccCceE
Confidence 46799999999999999999987432 27889999999999999999999986 5567766 7999999999999999
Q ss_pred EEEeCCC----CChhh--------------HHhhhhhhhhcCCcceEEEEEEEeCC
Q 006698 516 VVLLDVV----WNPFV--------------ERQAISRAYRLGQKRVVHVYHLITSE 553 (635)
Q Consensus 516 vi~~d~~----wnp~~--------------~~Qa~gR~~R~GQ~~~V~vy~li~~~ 553 (635)
||.++.+ +||.. +.||.||++|. ++-.+|+|+++.
T Consensus 284 VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~ 336 (819)
T TIGR01970 284 VIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEE 336 (819)
T ss_pred EEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHH
Confidence 9998875 45544 78999999996 577889998754
No 91
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.76 E-value=1.6e-18 Score=161.60 Aligned_cols=173 Identities=20% Similarity=0.281 Sum_probs=110.1
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~ 146 (635)
.+|||||.+++..+.+.+... ...+.+++..+||+|||++++.++..+.. +++|+|| .+++.
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~------------~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----~~l~~~p~~~l~~ 64 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENK------------KEERRVLLNAPTGSGKTIIALALILELAR-----KVLIVAPNISLLE 64 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTT------------SGCSEEEEEESTTSSHHHHHHHHHHHHHC-----EEEEEESSHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhc------------CCCCCEEEEECCCCCcChhhhhhhhcccc-----ceeEecCHHHHHH
Confidence 469999999999998876531 12578999999999999999998877765 8899999 68999
Q ss_pred HHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcch---
Q 006698 147 TWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD--- 223 (635)
Q Consensus 147 qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~--- 223 (635)
||.+++..+....................... ....... ....-....++++++++.+.......
T Consensus 65 Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~-~~~~~~~~~~i~~~~~~~l~~~~~~~~~~ 132 (184)
T PF04851_consen 65 QWYDEFDDFGSEKYNFFEKSIKPAYDSKEFIS-----------IQDDISD-KSESDNNDKDIILTTYQSLQSDIKEEKKI 132 (184)
T ss_dssp HHHHHHHHHSTTSEEEEE--GGGCCE-SEEET-----------TTTEEEH-HHHHCBSS-SEEEEEHHHHHHHHHH----
T ss_pred HHHHHHHHhhhhhhhhcccccccccccccccc-----------ccccccc-ccccccccccchhhHHHHHHhhccccccc
Confidence 99999987765432221111000000000000 0000000 00011346789999999988765431
Q ss_pred -----hhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccC
Q 006698 224 -----ELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPF 271 (635)
Q Consensus 224 -----~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~ 271 (635)
.........+++||+||||++.+... ++.+......++++|||||.
T Consensus 133 ~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 133 DESARRSYKLLKNKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp -----GCHHGGGGSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred ccchhhhhhhccccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 11223445679999999999865432 66666688889999999994
No 92
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.75 E-value=3.5e-16 Score=171.79 Aligned_cols=314 Identities=17% Similarity=0.199 Sum_probs=211.1
Q ss_pred hHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccc
Q 006698 65 DVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSM 144 (635)
Q Consensus 65 ~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l 144 (635)
.+.-.--|-|..|++-+.+-+..+. .=.=+||.++|-|||=+|+-++- ..-...+-+.|+||..+
T Consensus 590 ~FPyeET~DQl~AI~eVk~DM~~~k-------------pMDRLiCGDVGFGKTEVAmRAAF--kAV~~GKQVAvLVPTTl 654 (1139)
T COG1197 590 SFPYEETPDQLKAIEEVKRDMESGK-------------PMDRLICGDVGFGKTEVAMRAAF--KAVMDGKQVAVLVPTTL 654 (1139)
T ss_pred cCCCcCCHHHHHHHHHHHHHhccCC-------------cchheeecCcCCcHHHHHHHHHH--HHhcCCCeEEEEcccHH
Confidence 4445667899999999877655432 22339999999999988875442 22223456899999777
Q ss_pred h-HHHHHHHHHhcCCCcccc--cCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhc
Q 006698 145 L-LTWEEEFKKWGIDIPFYN--LNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221 (635)
Q Consensus 145 ~-~qW~~E~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~ 221 (635)
+ .|-.+.|..-+.+++|.+ ++... +.++.. ..+...+. ..-||||-|+..+.+.+
T Consensus 655 LA~QHy~tFkeRF~~fPV~I~~LSRF~-s~kE~~---~il~~la~-----------------G~vDIvIGTHrLL~kdv- 712 (1139)
T COG1197 655 LAQQHYETFKERFAGFPVRIEVLSRFR-SAKEQK---EILKGLAE-----------------GKVDIVIGTHRLLSKDV- 712 (1139)
T ss_pred hHHHHHHHHHHHhcCCCeeEEEecccC-CHHHHH---HHHHHHhc-----------------CCccEEEechHhhCCCc-
Confidence 7 555666665455555443 33211 112222 22333322 35689999998887654
Q ss_pred chhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhh
Q 006698 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300 (635)
Q Consensus 222 ~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~ 300 (635)
.+...+++||||=|++.- +.-..++.+ ..-.++-||||||+..+.--.+ +
T Consensus 713 -------~FkdLGLlIIDEEqRFGV---k~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~-------G------------ 763 (1139)
T COG1197 713 -------KFKDLGLLIIDEEQRFGV---KHKEKLKELRANVDVLTLSATPIPRTLNMSLS-------G------------ 763 (1139)
T ss_pred -------EEecCCeEEEechhhcCc---cHHHHHHHHhccCcEEEeeCCCCcchHHHHHh-------c------------
Confidence 233458999999999854 355677777 4567999999999876642110 0
Q ss_pred hhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEE---EeCCcHHHHHHHHHHhhhh
Q 006698 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV---ILQPDEFQKRLCKAVEGVK 377 (635)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v---~~~~s~~q~~~y~~~~~~~ 377 (635)
+ |.-+.+ .-||.....| ..+.++..
T Consensus 764 --------------------------i-------------RdlSvI--~TPP~~R~pV~T~V~~~d~~~----------- 791 (1139)
T COG1197 764 --------------------------I-------------RDLSVI--ATPPEDRLPVKTFVSEYDDLL----------- 791 (1139)
T ss_pred --------------------------c-------------hhhhhc--cCCCCCCcceEEEEecCChHH-----------
Confidence 0 000011 2333322221 12222111
Q ss_pred hHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc-CCCeEEEEcCChhHHHHHHHHH
Q 006698 378 SFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS-TNEKVLVFSQYIEPLTLIMEQL 456 (635)
Q Consensus 378 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~-~~~kviIFs~~~~~~~~l~~~L 456 (635)
.+. .++++. +|.+|-.-.+.+..+..+...|
T Consensus 792 --------------------------------------------ire----AI~REl~RgGQvfYv~NrV~~Ie~~~~~L 823 (1139)
T COG1197 792 --------------------------------------------IRE----AILRELLRGGQVFYVHNRVESIEKKAERL 823 (1139)
T ss_pred --------------------------------------------HHH----HHHHHHhcCCEEEEEecchhhHHHHHHHH
Confidence 011 122222 6778888888899999999999
Q ss_pred HhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCC-CChhhHHhhhhhh
Q 006698 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVV-WNPFVERQAISRA 535 (635)
Q Consensus 457 ~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~-wnp~~~~Qa~gR~ 535 (635)
+... |..++.+.||.|+..+-++++..|.+ ++..||| ||.....|||++.||++|+-+.+ +--++.-|-.||+
T Consensus 824 ~~LV---PEarI~vaHGQM~e~eLE~vM~~F~~--g~~dVLv-~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRV 897 (1139)
T COG1197 824 RELV---PEARIAVAHGQMRERELEEVMLDFYN--GEYDVLV-CTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRV 897 (1139)
T ss_pred HHhC---CceEEEEeecCCCHHHHHHHHHHHHc--CCCCEEE-EeeeeecCcCCCCCceEEEeccccccHHHHHHhcccc
Confidence 9885 48889999999999999999999998 5677777 68899999999999999997764 6888999999999
Q ss_pred hhcCCcceEEEEEEEeC
Q 006698 536 YRLGQKRVVHVYHLITS 552 (635)
Q Consensus 536 ~R~GQ~~~V~vy~li~~ 552 (635)
+|-. +.-|.|.++..
T Consensus 898 GRS~--~~AYAYfl~p~ 912 (1139)
T COG1197 898 GRSN--KQAYAYFLYPP 912 (1139)
T ss_pred CCcc--ceEEEEEeecC
Confidence 9953 57788888875
No 93
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.75 E-value=2.4e-16 Score=167.36 Aligned_cols=98 Identities=20% Similarity=0.271 Sum_probs=77.7
Q ss_pred HHHHHHHHHhhhcccCCceEEEEeCCCCHHHH--HHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCC---
Q 006698 449 LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKR--QSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVW--- 523 (635)
Q Consensus 449 ~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r--~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~w--- 523 (635)
.+.+++.|.+.|+ +.++.++|++++..++ +.+++.|.+ ++..||| +|+..+.|+|++.++.|+++|.+-
T Consensus 271 te~~~e~l~~~fp---~~~v~~~d~d~~~~~~~~~~~l~~f~~--g~~~ILV-gT~~i~kG~d~~~v~lV~vl~aD~~l~ 344 (505)
T TIGR00595 271 TEQVEEELAKLFP---GARIARIDSDTTSRKGAHEALLNQFAN--GKADILI-GTQMIAKGHHFPNVTLVGVLDADSGLH 344 (505)
T ss_pred HHHHHHHHHhhCC---CCcEEEEecccccCccHHHHHHHHHhc--CCCCEEE-eCcccccCCCCCcccEEEEEcCccccc
Confidence 5778888888874 8899999999876665 889999997 5577776 699999999999999997766542
Q ss_pred Ch---------hhHHhhhhhhhhcCCcceEEEEEEEeC
Q 006698 524 NP---------FVERQAISRAYRLGQKRVVHVYHLITS 552 (635)
Q Consensus 524 np---------~~~~Qa~gR~~R~GQ~~~V~vy~li~~ 552 (635)
.| ..+.|+.||++|-+..-.|.+..+-..
T Consensus 345 ~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 345 SPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred CcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 23 568999999999877667766554443
No 94
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.75 E-value=1.6e-17 Score=158.50 Aligned_cols=130 Identities=21% Similarity=0.263 Sum_probs=111.3
Q ss_pred cchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEc
Q 006698 421 GIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500 (635)
Q Consensus 421 s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~s 500 (635)
..|+-.|++.|... ..+|+||+.-..-+|.|.++|--. |...+.|+|+..+++|...++.|+. ++-.||+ .
T Consensus 407 EaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlK-----GVEavaIHGGKDQedR~~ai~afr~--gkKDVLV-A 477 (610)
T KOG0341|consen 407 EAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLK-----GVEAVAIHGGKDQEDRHYAIEAFRA--GKKDVLV-A 477 (610)
T ss_pred hhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHHc-----cceeEEeecCcchhHHHHHHHHHhc--CCCceEE-E
Confidence 34777788877764 457999999999999999999887 9999999999999999999999998 4455666 6
Q ss_pred cCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHH
Q 006698 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561 (635)
Q Consensus 501 t~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~ 561 (635)
|++++-|+|+++..+||+||.|-.-.+|.+||||.+|-|.+- ....|+.+++-+..+++
T Consensus 478 TDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~G--iATTfINK~~~esvLlD 536 (610)
T KOG0341|consen 478 TDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTG--IATTFINKNQEESVLLD 536 (610)
T ss_pred ecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcc--eeeeeecccchHHHHHH
Confidence 999999999999999999999999999999999999998653 44557788776665554
No 95
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=4.7e-17 Score=164.59 Aligned_cols=126 Identities=20% Similarity=0.239 Sum_probs=109.9
Q ss_pred ccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEE
Q 006698 418 PEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497 (635)
Q Consensus 418 ~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vl 497 (635)
....+|+.++.+++...-.-.++||.|+.+.+..|...|... +++.+.+|+|..++.+|...+++|+. |.++|+
T Consensus 369 gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~----~~i~v~vIh~e~~~~qrde~~~~FR~--g~IwvL 442 (593)
T KOG0344|consen 369 GSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIY----DNINVDVIHGERSQKQRDETMERFRI--GKIWVL 442 (593)
T ss_pred ecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhc----cCcceeeEecccchhHHHHHHHHHhc--cCeeEE
Confidence 445678888999998876678999999999998888888622 49999999999999999999999998 789998
Q ss_pred EEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeC
Q 006698 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552 (635)
Q Consensus 498 l~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~ 552 (635)
+ +|+..+.|+|+.+++.||+||.|-+-..|..|+||++|.|+.- ..|.|++.
T Consensus 443 i-cTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g--~Aitfytd 494 (593)
T KOG0344|consen 443 I-CTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSG--KAITFYTD 494 (593)
T ss_pred E-ehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCc--ceEEEecc
Confidence 8 5999999999999999999999999999999999999999754 34445554
No 96
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.75 E-value=5.1e-17 Score=173.82 Aligned_cols=112 Identities=17% Similarity=0.164 Sum_probs=97.3
Q ss_pred cchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 006698 421 GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498 (635)
Q Consensus 421 s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll 498 (635)
..|..++.+.+... .|..|||||++....+.+.+.|.+. |+++..++|. ..+|+..+..|.. +...|+|
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~-----gi~~~~Lna~--q~~rEa~ii~~ag--~~g~VtI 458 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKER-----GIPHNVLNAK--NHEREAEIIAQAG--RKGAVTI 458 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHc-----CCCeEEeeCC--hHHHHHHHHHhcC--CCceEEE
Confidence 34777776655443 8999999999999999999999997 9999999999 6789999999986 3455666
Q ss_pred EccCCccccccccc-------CCeEEEeCCCCChhhHHhhhhhhhhcCCcc
Q 006698 499 ASTKACCEGINLVG-------ASRVVLLDVVWNPFVERQAISRAYRLGQKR 542 (635)
Q Consensus 499 ~st~~~~~GlnL~~-------a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~ 542 (635)
+|+.+|.|+|+.. ..+||.++.|-|+..+.|+.||++|.|..=
T Consensus 459 -ATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G 508 (745)
T TIGR00963 459 -ATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPG 508 (745)
T ss_pred -EeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCc
Confidence 6999999999987 669999999999999999999999999764
No 97
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.74 E-value=3.8e-16 Score=179.59 Aligned_cols=87 Identities=15% Similarity=0.207 Sum_probs=73.9
Q ss_pred HHHHHHHHhcCCCeEEEEcCCh---hHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEc-
Q 006698 425 RFLLILLELSTNEKVLVFSQYI---EPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS- 500 (635)
Q Consensus 425 ~~l~~~l~~~~~~kviIFs~~~---~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~s- 500 (635)
..|.+++... +.++|||++.. ..++.|.+.|... |+++..+||+++ +..++.|++ |+++|||++
T Consensus 316 ~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~-----g~~a~~lhg~~~----~~~l~~Fr~--G~~~vLVata 383 (1171)
T TIGR01054 316 ETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENH-----GVKAVAYHATKP----KEDYEKFAE--GEIDVLIGVA 383 (1171)
T ss_pred HHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhC-----CceEEEEeCCCC----HHHHHHHHc--CCCCEEEEec
Confidence 3455666543 46899999998 8999999999987 999999999986 368999998 778899975
Q ss_pred --cCCccccccccc-CCeEEEeCCCC
Q 006698 501 --TKACCEGINLVG-ASRVVLLDVVW 523 (635)
Q Consensus 501 --t~~~~~GlnL~~-a~~vi~~d~~w 523 (635)
|++++.|||++. .+.|||||+|-
T Consensus 384 ~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 384 SYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred cccCcccccCCCCccccEEEEECCCC
Confidence 689999999998 79999999984
No 98
>PRK09694 helicase Cas3; Provisional
Probab=99.73 E-value=1.1e-15 Score=169.41 Aligned_cols=102 Identities=13% Similarity=0.167 Sum_probs=80.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHH----HHHHHHh-cCCCCCcEEEEEccCCcccccc
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKR----QSSINVL-NDPSSQARIMLASTKACCEGIN 509 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r----~~~i~~F-~~~~~~~~vll~st~~~~~Gln 509 (635)
.+.+++||++.+..+..+.+.|.+.++ +...+..+||.++..+| +++++.| +++......+|++|++.+.|||
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~--~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLD 636 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNN--TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLD 636 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCC--CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheee
Confidence 788999999999999999999987632 13679999999999988 4578888 4322111234558999999999
Q ss_pred cccCCeEEEeCCCCChhhHHhhhhhhhhcCCc
Q 006698 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQK 541 (635)
Q Consensus 510 L~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~ 541 (635)
+ .++.+|....| ...+.||.||++|.|..
T Consensus 637 I-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 637 L-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred c-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 9 57888876555 67899999999999864
No 99
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.73 E-value=1.4e-17 Score=166.03 Aligned_cols=97 Identities=16% Similarity=0.232 Sum_probs=88.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCe
Q 006698 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515 (635)
Q Consensus 436 ~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~ 515 (635)
..+.||||+..+.+..|.-+|... ++....+|..|.+++|.+-+++|.+.. -- +|++|++++.|||+++..+
T Consensus 463 PGrTlVF~NsId~vKRLt~~L~~L-----~i~p~~LHA~M~QKqRLknLEkF~~~~--~~-VLiaTDVAARGLDIp~V~H 534 (731)
T KOG0347|consen 463 PGRTLVFCNSIDCVKRLTVLLNNL-----DIPPLPLHASMIQKQRLKNLEKFKQSP--SG-VLIATDVAARGLDIPGVQH 534 (731)
T ss_pred CCceEEEechHHHHHHHHHHHhhc-----CCCCchhhHHHHHHHHHHhHHHHhcCC--Ce-EEEeehhhhccCCCCCcce
Confidence 348999999999999999999987 999999999999999999999999733 33 4557999999999999999
Q ss_pred EEEeCCCCChhhHHhhhhhhhhcCC
Q 006698 516 VVLLDVVWNPFVERQAISRAYRLGQ 540 (635)
Q Consensus 516 vi~~d~~wnp~~~~Qa~gR~~R~GQ 540 (635)
||||..|-+...|.+|-||..|.+.
T Consensus 535 VIHYqVPrtseiYVHRSGRTARA~~ 559 (731)
T KOG0347|consen 535 VIHYQVPRTSEIYVHRSGRTARANS 559 (731)
T ss_pred EEEeecCCccceeEecccccccccC
Confidence 9999999999999999999999764
No 100
>PRK14701 reverse gyrase; Provisional
Probab=99.72 E-value=5.6e-16 Score=181.77 Aligned_cols=104 Identities=15% Similarity=0.189 Sum_probs=84.5
Q ss_pred HHHHHHHHhcCCCeEEEEcCChhH---HHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEcc
Q 006698 425 RFLLILLELSTNEKVLVFSQYIEP---LTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAST 501 (635)
Q Consensus 425 ~~l~~~l~~~~~~kviIFs~~~~~---~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st 501 (635)
..+.+++... +..+||||+.... ++.+.+.|... |+++..++|+ |...+++|.+ |+++||+++.
T Consensus 320 ~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~-----Gi~a~~~h~~-----R~~~l~~F~~--G~~~VLVaT~ 386 (1638)
T PRK14701 320 EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLED-----GFKIELVSAK-----NKKGFDLFEE--GEIDYLIGVA 386 (1638)
T ss_pred HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHC-----CCeEEEecch-----HHHHHHHHHc--CCCCEEEEec
Confidence 3456666654 5789999998764 58899999987 9999999995 8899999998 6788888643
Q ss_pred ---CCccccccccc-CCeEEEeCCCC---ChhhHHhhh-------------hhhhhcCCc
Q 006698 502 ---KACCEGINLVG-ASRVVLLDVVW---NPFVERQAI-------------SRAYRLGQK 541 (635)
Q Consensus 502 ---~~~~~GlnL~~-a~~vi~~d~~w---np~~~~Qa~-------------gR~~R~GQ~ 541 (635)
++++.|||++. ...|||||+|- |...+.|.. ||++|-|..
T Consensus 387 s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 387 TYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred CCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 58999999997 99999999998 666555554 999998864
No 101
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.71 E-value=6.3e-17 Score=141.74 Aligned_cols=118 Identities=29% Similarity=0.393 Sum_probs=106.0
Q ss_pred chHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEE
Q 006698 422 IKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499 (635)
Q Consensus 422 ~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~ 499 (635)
.|...+.+++... .+.++|||+.+...++.+.+.|.+. +..+..++|+++..+|..+++.|++ +...+++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~f~~--~~~~ili- 83 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKP-----GIKVAALHGDGSQEEREEVLKDFRE--GEIVVLV- 83 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhc-----CCcEEEEECCCCHHHHHHHHHHHHc--CCCcEEE-
Confidence 5888888888876 5889999999999999999999885 8899999999999999999999998 3345555
Q ss_pred ccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEE
Q 006698 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVY 547 (635)
Q Consensus 500 st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy 547 (635)
+|.++++|+|++.+++||+++++|++..+.|++||++|.||...|.+|
T Consensus 84 ~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 84 ATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred EcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 799999999999999999999999999999999999999997777664
No 102
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.71 E-value=2.6e-16 Score=153.06 Aligned_cols=123 Identities=20% Similarity=0.218 Sum_probs=102.0
Q ss_pred cchHHHHHHHHHhc-CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEE
Q 006698 421 GIKTRFLLILLELS-TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499 (635)
Q Consensus 421 s~K~~~l~~~l~~~-~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~ 499 (635)
.-|...+..++... -..|.|||.+..+..-.+.-.|++- |++.++++|.++...|.-++++||. |-..++|+
T Consensus 252 ~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqF-----GiksciLNseLP~NSR~Hii~QFNk--G~YdivIA 324 (569)
T KOG0346|consen 252 EDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQF-----GIKSCILNSELPANSRCHIIEQFNK--GLYDIVIA 324 (569)
T ss_pred chhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHh-----CcHhhhhcccccccchhhHHHHhhC--cceeEEEE
Confidence 44777777777665 5568999999999999999899886 9999999999999999999999998 55677775
Q ss_pred ccC--------------------------C---------cccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceE
Q 006698 500 STK--------------------------A---------CCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVV 544 (635)
Q Consensus 500 st~--------------------------~---------~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V 544 (635)
|+ . .+.|||++..+.|++||.|-++..|++|+||..|-|.+-
T Consensus 325 -tD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~G-- 401 (569)
T KOG0346|consen 325 -TDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKG-- 401 (569)
T ss_pred -ccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCC--
Confidence 44 1 357999999999999999999999999999999987544
Q ss_pred EEEEEEeCC
Q 006698 545 HVYHLITSE 553 (635)
Q Consensus 545 ~vy~li~~~ 553 (635)
.+..|+...
T Consensus 402 talSfv~P~ 410 (569)
T KOG0346|consen 402 TALSFVSPK 410 (569)
T ss_pred ceEEEecch
Confidence 344555543
No 103
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.71 E-value=5.7e-16 Score=172.31 Aligned_cols=112 Identities=21% Similarity=0.244 Sum_probs=92.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCC
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGAS 514 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~ 514 (635)
.+..+|||+.....++.+.+.|...++ .++.+..++|+++.++|.++++.|.+ |..+|+| +|+.++.||++.+++
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~--~~~~v~~Lhg~l~~~eq~~~~~~~~~--G~rkVlv-ATnIAErsLtIp~V~ 285 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVA--SDVLLCPLYGALSLAEQQKAILPAPA--GRRKVVL-ATNIAETSLTIEGIR 285 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhcc--CCceEEEeeCCCCHHHHHHHhccccC--CCeEEEE-ecchHHhcccccCce
Confidence 356899999999999999999987322 27889999999999999999999986 5567666 799999999999999
Q ss_pred eEEEeCCC----CCh--------------hhHHhhhhhhhhcCCcceEEEEEEEeCCC
Q 006698 515 RVVLLDVV----WNP--------------FVERQAISRAYRLGQKRVVHVYHLITSET 554 (635)
Q Consensus 515 ~vi~~d~~----wnp--------------~~~~Qa~gR~~R~GQ~~~V~vy~li~~~t 554 (635)
+||.++.+ |+| +.+.||.||++|. .+-.+|+|+++..
T Consensus 286 ~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~ 340 (812)
T PRK11664 286 LVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQ 340 (812)
T ss_pred EEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHH
Confidence 99997655 322 3589999999996 4788899988653
No 104
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.68 E-value=1.4e-15 Score=163.99 Aligned_cols=123 Identities=21% Similarity=0.243 Sum_probs=109.2
Q ss_pred ccchHHHHHHHHHhc-CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 006698 420 AGIKTRFLLILLELS-TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498 (635)
Q Consensus 420 ~s~K~~~l~~~l~~~-~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll 498 (635)
...|+..|.++|.+. ...++|||++...-++.+.+.|.+. |+.+..+||+.++.+|...++.|++ +.+.+||
T Consensus 596 e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~a-----g~~~~slHGgv~q~dR~sti~dfK~--~~~~LLv 668 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKA-----GYNCDSLHGGVDQHDRSSTIEDFKN--GVVNLLV 668 (997)
T ss_pred chHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhc-----CcchhhhcCCCchHHHHhHHHHHhc--cCceEEE
Confidence 355888888888877 7889999999999999999999987 9999999999999999999999998 5566666
Q ss_pred EccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeC
Q 006698 499 ASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552 (635)
Q Consensus 499 ~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~ 552 (635)
.|++++.||++..-..||+||.|-....|..|.||++|-|.+- ..|.|+..
T Consensus 669 -aTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 669 -ATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred -ehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 6999999999999999999999999999999999999998665 66677776
No 105
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.2e-15 Score=146.83 Aligned_cols=120 Identities=22% Similarity=0.289 Sum_probs=105.2
Q ss_pred hHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccC
Q 006698 423 KTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTK 502 (635)
Q Consensus 423 K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~ 502 (635)
|+..|.++.+ .-...+||++...-++.+...|..+ |.....++|.+.+.+|..+...|+. |..+||| +|.
T Consensus 252 k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~-----~~~~s~~~~d~~q~~R~~~~~ef~~--gssrvlI-ttd 321 (397)
T KOG0327|consen 252 KLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAH-----GFTVSAIHGDMEQNERDTLMREFRS--GSSRVLI-TTD 321 (397)
T ss_pred cccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhC-----CceEEEeecccchhhhhHHHHHhhc--CCceEEe-ecc
Confidence 7777777777 5667999999999999999999776 9999999999999999999999998 5567777 799
Q ss_pred CcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCC
Q 006698 503 ACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554 (635)
Q Consensus 503 ~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~t 554 (635)
..+.|+|++.++.||+||+|-|...|..|+||++|.|.+ ..+..++++.+
T Consensus 322 l~argidv~~~slvinydlP~~~~~yihR~gr~gr~grk--g~~in~v~~~d 371 (397)
T KOG0327|consen 322 LLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRK--GVAINFVTEED 371 (397)
T ss_pred ccccccchhhcceeeeeccccchhhhhhhcccccccCCC--ceeeeeehHhh
Confidence 999999999999999999999999999999999999953 44455666553
No 106
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.64 E-value=3.3e-16 Score=123.12 Aligned_cols=77 Identities=34% Similarity=0.522 Sum_probs=70.0
Q ss_pred HHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhh
Q 006698 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISR 534 (635)
Q Consensus 455 ~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR 534 (635)
.|+.. |+.+..++|+++..+|+.+++.|+++ ...||+ +|+++++|+|++.+++||+++++||+..+.|++||
T Consensus 2 ~L~~~-----~~~~~~i~~~~~~~~r~~~~~~f~~~--~~~vli-~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR 73 (78)
T PF00271_consen 2 FLEKK-----GIKVAIIHGDMSQKERQEILKKFNSG--EIRVLI-ATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGR 73 (78)
T ss_dssp HHHHT-----TSSEEEESTTSHHHHHHHHHHHHHTT--SSSEEE-ESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTT
T ss_pred ChHHC-----CCcEEEEECCCCHHHHHHHHHHhhcc--CceEEE-eeccccccccccccccccccccCCCHHHHHHHhhc
Confidence 45555 99999999999999999999999984 455555 68999999999999999999999999999999999
Q ss_pred hhhcC
Q 006698 535 AYRLG 539 (635)
Q Consensus 535 ~~R~G 539 (635)
++|.|
T Consensus 74 ~~R~g 78 (78)
T PF00271_consen 74 AGRIG 78 (78)
T ss_dssp SSTTT
T ss_pred CCCCC
Confidence 99987
No 107
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.63 E-value=4.4e-13 Score=127.02 Aligned_cols=309 Identities=20% Similarity=0.229 Sum_probs=191.6
Q ss_pred HhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccch
Q 006698 67 RKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSML 145 (635)
Q Consensus 67 ~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~ 145 (635)
..+|-|+|+.+.+.+++.+.. ....|+-..+|+|||-+....+...+..| +++.|..| .-++
T Consensus 95 ~G~Ls~~Q~~as~~l~q~i~~---------------k~~~lv~AV~GaGKTEMif~~i~~al~~G--~~vciASPRvDVc 157 (441)
T COG4098 95 KGTLSPGQKKASNQLVQYIKQ---------------KEDTLVWAVTGAGKTEMIFQGIEQALNQG--GRVCIASPRVDVC 157 (441)
T ss_pred ccccChhHHHHHHHHHHHHHh---------------cCcEEEEEecCCCchhhhHHHHHHHHhcC--CeEEEecCcccch
Confidence 578999999999999887653 56789999999999988777776665544 46889999 5566
Q ss_pred HHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhh
Q 006698 146 LTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225 (635)
Q Consensus 146 ~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~ 225 (635)
..-...++.-+++..+..+++..... -...-||-||++.++-
T Consensus 158 lEl~~Rlk~aF~~~~I~~Lyg~S~~~-------------------------------fr~plvVaTtHQLlrF------- 199 (441)
T COG4098 158 LELYPRLKQAFSNCDIDLLYGDSDSY-------------------------------FRAPLVVATTHQLLRF------- 199 (441)
T ss_pred HHHHHHHHHhhccCCeeeEecCCchh-------------------------------ccccEEEEehHHHHHH-------
Confidence 55556666666656555555422110 1122345555555432
Q ss_pred hhhhccCCCEEEEeCCCcCCC-cccHHHHHHHhc--ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhh
Q 006698 226 SGILLDLPGLFVFDEGHTPRN-DDTCMFKALSRI--KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302 (635)
Q Consensus 226 ~~~~~~~~~~vIvDEaH~~kn-~~s~~~~~l~~l--~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~ 302 (635)
...||++||||...+-= .+-.+..++++- .....+.|||||- .++- +.
T Consensus 200 ----k~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~----k~l~---------------------r~ 250 (441)
T COG4098 200 ----KQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPT----KKLE---------------------RK 250 (441)
T ss_pred ----HhhccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCCh----HHHH---------------------HH
Confidence 23489999999998622 122344455544 4556899999992 1110 00
Q ss_pred hhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchh--hhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHH
Q 006698 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFV--NVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFV 380 (635)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~ 380 (635)
+ +...+...- .|.-+ +.||-. ..+++.. .-+
T Consensus 251 ~--------------------------~~g~~~~~klp~RfH~----~pLpvP--kf~w~~~--~~k------------- 283 (441)
T COG4098 251 I--------------------------LKGNLRILKLPARFHG----KPLPVP--KFVWIGN--WNK------------- 283 (441)
T ss_pred h--------------------------hhCCeeEeecchhhcC----CCCCCC--ceEEecc--HHH-------------
Confidence 0 000000000 01100 122211 1111110 000
Q ss_pred HHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHh
Q 006698 381 ELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRH 458 (635)
Q Consensus 381 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~ 458 (635)
.+..- ...+ .|...++.. .+..++||.....+++.+...|++
T Consensus 284 -----------------------------~l~r~----kl~~---kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~ 327 (441)
T COG4098 284 -----------------------------KLQRN----KLPL---KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKK 327 (441)
T ss_pred -----------------------------Hhhhc----cCCH---HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHh
Confidence 00000 0112 234445544 788999999999999999999977
Q ss_pred hhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCC--CCChhhHHhhhhhhh
Q 006698 459 RFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDV--VWNPFVERQAISRAY 536 (635)
Q Consensus 459 ~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~--~wnp~~~~Qa~gR~~ 536 (635)
.++ ...+..++... ..|.+.+++|++ |...+|| +|..+..|++++..++.|+=.- .++-+...|--||++
T Consensus 328 ~~~---~~~i~~Vhs~d--~~R~EkV~~fR~--G~~~lLi-TTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvG 399 (441)
T COG4098 328 KLP---KETIASVHSED--QHRKEKVEAFRD--GKITLLI-TTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVG 399 (441)
T ss_pred hCC---ccceeeeeccC--ccHHHHHHHHHc--CceEEEE-EeehhhcccccccceEEEecCCcccccHHHHHHHhhhcc
Confidence 653 34445566553 578999999998 6676666 7999999999999999988544 489999999999999
Q ss_pred hcCCcceEEEEEEE
Q 006698 537 RLGQKRVVHVYHLI 550 (635)
Q Consensus 537 R~GQ~~~V~vy~li 550 (635)
|--..-+-.|+.|-
T Consensus 400 Rs~~~PtGdv~FFH 413 (441)
T COG4098 400 RSLERPTGDVLFFH 413 (441)
T ss_pred CCCcCCCCcEEEEe
Confidence 96544334444443
No 108
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.63 E-value=8.3e-15 Score=162.09 Aligned_cols=317 Identities=19% Similarity=0.124 Sum_probs=203.8
Q ss_pred HhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccch
Q 006698 67 RKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSML 145 (635)
Q Consensus 67 ~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~ 145 (635)
....||-|.++|...+. ++.+++-.++|.||++.- .+-.....+-+|||.| .+|+
T Consensus 262 ~~~FR~~Q~eaI~~~l~-------------------Gkd~fvlmpTG~GKSLCY-----QlPA~l~~gitvVISPL~SLm 317 (941)
T KOG0351|consen 262 HKGFRPNQLEAINATLS-------------------GKDCFVLMPTGGGKSLCY-----QLPALLLGGVTVVISPLISLM 317 (941)
T ss_pred cccCChhHHHHHHHHHc-------------------CCceEEEeecCCceeeEe-----eccccccCCceEEeccHHHHH
Confidence 35699999999984432 779999999999999432 1111111235699999 7888
Q ss_pred HHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcch-h
Q 006698 146 LTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD-E 224 (635)
Q Consensus 146 ~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~-~ 224 (635)
.-....+.+.. ++...+++.. ........+..+..+. ....++-+|++.+...-... .
T Consensus 318 ~DQv~~L~~~~--I~a~~L~s~q----~~~~~~~i~q~l~~~~---------------~~ikilYvtPE~v~~~~~l~~~ 376 (941)
T KOG0351|consen 318 QDQVTHLSKKG--IPACFLSSIQ----TAAERLAILQKLANGN---------------PIIKILYVTPEKVVASEGLLES 376 (941)
T ss_pred HHHHHhhhhcC--cceeeccccc----cHHHHHHHHHHHhCCC---------------CeEEEEEeCHHHhhcccchhhH
Confidence 66555554332 2223333211 1111222333332221 23467778887765432211 1
Q ss_pred hhhhhcc-CCCEEEEeCCCcCCCc-------ccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHH
Q 006698 225 LSGILLD-LPGLFVFDEGHTPRND-------DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTV 296 (635)
Q Consensus 225 ~~~~~~~-~~~~vIvDEaH~~kn~-------~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~ 296 (635)
+..+... ...++|+||||-...+ ..++.....+......++||||--..--+|+...|.+-+|.++...
T Consensus 377 ~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s--- 453 (941)
T KOG0351|consen 377 LADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS--- 453 (941)
T ss_pred HHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc---
Confidence 1122111 1578999999966443 3333333444455678999999766556666665555544432110
Q ss_pred HhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhh
Q 006698 297 RKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGV 376 (635)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~ 376 (635)
..++....-|....+
T Consensus 454 ----------------------------------------------------fnR~NL~yeV~~k~~------------- 468 (941)
T KOG0351|consen 454 ----------------------------------------------------FNRPNLKYEVSPKTD------------- 468 (941)
T ss_pred ----------------------------------------------------CCCCCceEEEEeccC-------------
Confidence 011111111111110
Q ss_pred hhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHh-cCCCeEEEEcCChhHHHHHHHH
Q 006698 377 KSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL-STNEKVLVFSQYIEPLTLIMEQ 455 (635)
Q Consensus 377 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~-~~~~kviIFs~~~~~~~~l~~~ 455 (635)
......+...+.. .++...||||.++.+.+.+...
T Consensus 469 --------------------------------------------~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~ 504 (941)
T KOG0351|consen 469 --------------------------------------------KDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAV 504 (941)
T ss_pred --------------------------------------------ccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHH
Confidence 0001111222222 3788999999999999999999
Q ss_pred HHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhh
Q 006698 456 LRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535 (635)
Q Consensus 456 L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~ 535 (635)
|... |+....+|++++..+|+.+...|.. ++++|+++ |=|.|-|||-.+...||||..|-+..-|-|-.||+
T Consensus 505 L~~~-----~~~a~~YHAGl~~~~R~~Vq~~w~~--~~~~VivA-TVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRA 576 (941)
T KOG0351|consen 505 LRSL-----GKSAAFYHAGLPPKERETVQKAWMS--DKIRVIVA-TVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRA 576 (941)
T ss_pred HHHh-----chhhHhhhcCCCHHHHHHHHHHHhc--CCCeEEEE-EeeccCCCCCCceeEEEECCCchhHHHHHHhcccc
Confidence 9998 9999999999999999999999998 55888775 88999999999999999999999999999999999
Q ss_pred hhcCCcceEEEEE
Q 006698 536 YRLGQKRVVHVYH 548 (635)
Q Consensus 536 ~R~GQ~~~V~vy~ 548 (635)
+|-|+...+..|+
T Consensus 577 GRDG~~s~C~l~y 589 (941)
T KOG0351|consen 577 GRDGLPSSCVLLY 589 (941)
T ss_pred CcCCCcceeEEec
Confidence 9999988665544
No 109
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.62 E-value=3.2e-13 Score=147.05 Aligned_cols=130 Identities=22% Similarity=0.173 Sum_probs=106.6
Q ss_pred cchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 006698 421 GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498 (635)
Q Consensus 421 s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll 498 (635)
..++..|.+.+... .+.++||||.....++.|.+.|... |+++..++|.++..+|.++++.|+. |++.|++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~-----gi~~~~lh~~~~~~eR~~~l~~fr~--G~i~VLV 497 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL-----GIKVRYLHSEIDTLERVEIIRDLRL--GEFDVLV 497 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh-----ccceeeeeCCCCHHHHHHHHHHHhc--CCceEEE
Confidence 34566666666554 7899999999999999999999987 9999999999999999999999987 6677776
Q ss_pred EccCCcccccccccCCeEEEeC-----CCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCC--hHHHHHH
Q 006698 499 ASTKACCEGINLVGASRVVLLD-----VVWNPFVERQAISRAYRLGQKRVVHVYHLITSET--LEWDKLR 561 (635)
Q Consensus 499 ~st~~~~~GlnL~~a~~vi~~d-----~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~t--iEe~i~~ 561 (635)
+|+.+++|++++.++.||++| .+-+...+.|++||++|.. ...++.|+...| +...+.+
T Consensus 498 -~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~---~G~vi~~~~~~~~~~~~ai~~ 563 (655)
T TIGR00631 498 -GINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV---NGKVIMYADKITDSMQKAIEE 563 (655)
T ss_pred -EcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC---CCEEEEEEcCCCHHHHHHHHH
Confidence 699999999999999999999 5678899999999999963 334555555544 3444444
No 110
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.62 E-value=4.8e-14 Score=159.89 Aligned_cols=111 Identities=15% Similarity=0.158 Sum_probs=86.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCC
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGAS 514 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~ 514 (635)
...++|||+.....++.+.+.|...- .+...+..++|+++.++|..+++. .+..+|+| +|++++.||++++.+
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~--~~~~~VlpLhg~Ls~~eQ~~Vf~~----~g~rkIIV-ATNIAEtSITIpgI~ 357 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLN--LRHTEILPLYARLSNSEQNRVFQS----HSGRRIVL-ATNVAETSLTVPGIK 357 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcC--CCcceEeecccCCCHHHHHHHhcc----cCCeeEEE-eccHHhhccccCcce
Confidence 45689999999999999999998751 012346789999999999887654 24456665 799999999999999
Q ss_pred eEEEeC---------------CCCCh---hhHHhhhhhhhhcCCcceEEEEEEEeCCCh
Q 006698 515 RVVLLD---------------VVWNP---FVERQAISRAYRLGQKRVVHVYHLITSETL 555 (635)
Q Consensus 515 ~vi~~d---------------~~wnp---~~~~Qa~gR~~R~GQ~~~V~vy~li~~~ti 555 (635)
+||.++ ++-.| +.+.||.||++|. .+-.+|+|+++..+
T Consensus 358 yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~ 413 (1294)
T PRK11131 358 YVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDF 413 (1294)
T ss_pred EEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHH
Confidence 999975 33333 6799999999997 36778899986543
No 111
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.62 E-value=2.8e-14 Score=152.87 Aligned_cols=317 Identities=19% Similarity=0.181 Sum_probs=181.4
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhC--------CCCCcEEEeC-ccchHHHHHHHHHhcC--CCcccccCCCCCcC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLH--------PRCRPVIIAP-RSMLLTWEEEFKKWGI--DIPFYNLNKPELSG 171 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~--------~~~~~LIv~P-~~l~~qW~~E~~~~~~--~~~v~~~~~~~~~~ 171 (635)
..++|++.++|+|||..|...|....+.+ ..-+++.|+| ++|...-.+.+.+-+. ++.+..+.|..-..
T Consensus 126 neNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~ 205 (1230)
T KOG0952|consen 126 NENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLT 205 (1230)
T ss_pred CCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhh
Confidence 56999999999999999877766666641 2346799999 7776543333332222 44555555432221
Q ss_pred cccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhhhhccCCCEEEEeCCCcCCCccc--
Q 006698 172 KENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDT-- 249 (635)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~s-- 249 (635)
+.. ....+|+|||++.+--..+...-..-+.....+||+||.|.+.....
T Consensus 206 ~te----------------------------i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpv 257 (1230)
T KOG0952|consen 206 KTE----------------------------IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPV 257 (1230)
T ss_pred HHH----------------------------HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccch
Confidence 111 13678999999876544443211122334468999999999977533
Q ss_pred ---HHHHHHHhc----ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhhhhHhhhhhhhhhhhhccCcC
Q 006698 250 ---CMFKALSRI----KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHR 322 (635)
Q Consensus 250 ---~~~~~l~~l----~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (635)
..++.++.. ..-+.++||||- -+++|+.. ||.-.....
T Consensus 258 lEtiVaRtlr~vessqs~IRivgLSATl--PN~eDvA~---fL~vn~~~g------------------------------ 302 (1230)
T KOG0952|consen 258 LETIVARTLRLVESSQSMIRIVGLSATL--PNYEDVAR---FLRVNPYAG------------------------------ 302 (1230)
T ss_pred HHHHHHHHHHHHHhhhhheEEEEeeccC--CCHHHHHH---HhcCCCccc------------------------------
Confidence 333333332 445679999994 13444432 332110000
Q ss_pred cHHHHHHHHHhhcchhhhcccccccccCCCc-eEEEEE--eCCcHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCCCCCcc
Q 006698 323 DDEKLKELKEKIAPFVNVHKGTVLQESLPGL-RHSVVI--LQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQ 399 (635)
Q Consensus 323 ~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~-~~~~v~--~~~s~~q~~~y~~~~~~~~~~~~~~~~~~~~~~p~l~~~~ 399 (635)
+-.|..+ ..|-. .-..+- ..-...|.+..+
T Consensus 303 -----------lfsFd~~--------yRPvpL~~~~iG~k~~~~~~~~~~~d---------------------------- 335 (1230)
T KOG0952|consen 303 -----------LFSFDQR--------YRPVPLTQGFIGIKGKKNRQQKKNID---------------------------- 335 (1230)
T ss_pred -----------eeeeccc--------ccccceeeeEEeeecccchhhhhhHH----------------------------
Confidence 0000000 11100 000111 110111111111
Q ss_pred ccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCC--------------
Q 006698 400 FFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREG-------------- 465 (635)
Q Consensus 400 ~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g-------------- 465 (635)
..+.+.+.+.+. .|+.|+||++.+...-..++.|.+..... |
T Consensus 336 ---------------------~~~~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~-g~~~~f~~~~~~k~l 391 (1230)
T KOG0952|consen 336 ---------------------EVCYDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETN-GEKDLFLPSPRNKQL 391 (1230)
T ss_pred ---------------------HHHHHHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhc-CcccccCCChhhHHH
Confidence 123333444444 78999999998776665666665441100 1
Q ss_pred -----ceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhh----------HHh
Q 006698 466 -----QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFV----------ERQ 530 (635)
Q Consensus 466 -----~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~----------~~Q 530 (635)
.....-+.++.-.+|+..-+.|.. |.++|+. +|...+-|+||++-..+|-=...|+++. ..|
T Consensus 392 ~elf~~g~~iHhAGm~r~DR~l~E~~F~~--G~i~vL~-cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQ 468 (1230)
T KOG0952|consen 392 KELFQQGMGIHHAGMLRSDRQLVEKEFKE--GHIKVLC-CTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQ 468 (1230)
T ss_pred HHHHHhhhhhcccccchhhHHHHHHHHhc--CCceEEE-ecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHH
Confidence 123345667788899999999997 6688777 6999999999996666665666676664 789
Q ss_pred hhhhhhhcCCcceEEEEEEEeCCChH
Q 006698 531 AISRAYRLGQKRVVHVYHLITSETLE 556 (635)
Q Consensus 531 a~gR~~R~GQ~~~V~vy~li~~~tiE 556 (635)
-.||++|.+=.+.-..+-.-+.++++
T Consensus 469 ifGRAGRPqFd~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 469 IFGRAGRPQFDSSGEGIIITTRDKLD 494 (1230)
T ss_pred HHhccCCCCCCCCceEEEEecccHHH
Confidence 99999998755544444444444444
No 112
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.61 E-value=3e-15 Score=132.85 Aligned_cols=138 Identities=19% Similarity=0.157 Sum_probs=94.7
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCcc-chHHHHHHHHHhcC-CCcccccCCCCCcCcccchhhHhHh
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRS-MLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMD 182 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~-l~~qW~~E~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~ 182 (635)
++++.+++|+|||.+++.++......+..++++|+||.. +..+|.+.+..+.. ...+..+.+........
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 73 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE-------- 73 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH--------
Confidence 789999999999999999998887766677899999955 55666777777754 23333333211111000
Q ss_pred hhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhhhhccCCCEEEEeCCCcCCCcccHHH---HHHHhcc
Q 006698 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMF---KALSRIK 259 (635)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~---~~l~~l~ 259 (635)
..+....+++++|++.+........ .....+++||+||+|.+.+...... .......
T Consensus 74 -----------------~~~~~~~~i~i~t~~~~~~~~~~~~---~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~ 133 (144)
T cd00046 74 -----------------KLLSGKTDIVVGTPGRLLDELERLK---LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPK 133 (144)
T ss_pred -----------------HHhcCCCCEEEECcHHHHHHHHcCC---cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCc
Confidence 0113467899999998876553311 2334689999999999988654443 2333447
Q ss_pred cCcEEEEeccc
Q 006698 260 TRRRIILSGTP 270 (635)
Q Consensus 260 ~~~~l~LTgTP 270 (635)
..+++++||||
T Consensus 134 ~~~~i~~saTp 144 (144)
T cd00046 134 DRQVLLLSATP 144 (144)
T ss_pred cceEEEEeccC
Confidence 78899999998
No 113
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.60 E-value=5.5e-15 Score=139.53 Aligned_cols=159 Identities=23% Similarity=0.295 Sum_probs=110.3
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~ 146 (635)
.+++|||.+++..+... .+++++..++|+|||.+++.++.......+.+++||++| ..+..
T Consensus 7 ~~~~~~Q~~~~~~~~~~------------------~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~ 68 (201)
T smart00487 7 EPLRPYQKEAIEALLSG------------------LRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAE 68 (201)
T ss_pred CCCCHHHHHHHHHHHcC------------------CCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHH
Confidence 46899999999988641 169999999999999988888777766665678999999 78889
Q ss_pred HHHHHHHHhcCCCc---ccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCC-CeEEeeHHHHHHhhcc
Q 006698 147 TWEEEFKKWGIDIP---FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGT-GILGLSYRLFEKLVSG 222 (635)
Q Consensus 147 qW~~E~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vvi~ty~~~~~~~~~ 222 (635)
||..++.++.+... ...+.+. ..... ... +.... +++++|++.+......
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~------------------~~~~~~~v~~~t~~~l~~~~~~ 122 (201)
T smart00487 69 QWAEELKKLGPSLGLKVVGLYGGD-----SKREQ---LRK------------------LESGKTDILVTTPGRLLDLLEN 122 (201)
T ss_pred HHHHHHHHHhccCCeEEEEEeCCc-----chHHH---HHH------------------HhcCCCCEEEeChHHHHHHHHc
Confidence 99999998875422 2222211 10000 000 11233 8999999988876644
Q ss_pred hhhhhhhccCCCEEEEeCCCcCCC-cccHHHHHH-Hhc-ccCcEEEEecccCCC
Q 006698 223 DELSGILLDLPGLFVFDEGHTPRN-DDTCMFKAL-SRI-KTRRRIILSGTPFQN 273 (635)
Q Consensus 223 ~~~~~~~~~~~~~vIvDEaH~~kn-~~s~~~~~l-~~l-~~~~~l~LTgTP~~n 273 (635)
.. .....++++|+||||.+.+ ........+ ..+ +..+++++||||..+
T Consensus 123 ~~---~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 123 DL---LELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPEE 173 (201)
T ss_pred CC---cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCchh
Confidence 21 2334578999999999986 333333333 334 578899999999643
No 114
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.59 E-value=2.6e-13 Score=135.86 Aligned_cols=122 Identities=24% Similarity=0.218 Sum_probs=102.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCC
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGAS 514 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~ 514 (635)
.++|++|=+=...+++-|.++|.+. |+++..+|.....-+|.+++...+. |...||+ ....+-+|||++.++
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~-----gikv~YlHSdidTlER~eIirdLR~--G~~DvLV-GINLLREGLDiPEVs 516 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKEL-----GIKVRYLHSDIDTLERVEIIRDLRL--GEFDVLV-GINLLREGLDLPEVS 516 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhc-----CceEEeeeccchHHHHHHHHHHHhc--CCccEEE-eehhhhccCCCccee
Confidence 7899999999999999999999998 9999999999999999999999997 6677777 599999999999999
Q ss_pred eEEEeCCCC-----ChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHH
Q 006698 515 RVVLLDVVW-----NPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQAR 565 (635)
Q Consensus 515 ~vi~~d~~w-----np~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~ 565 (635)
.|.++|.+- +-...+|.+||+.|--.- .|..|-=...+++++.|-+...+
T Consensus 517 LVAIlDADKeGFLRse~SLIQtIGRAARN~~G-kvIlYAD~iT~sM~~Ai~ET~RR 571 (663)
T COG0556 517 LVAILDADKEGFLRSERSLIQTIGRAARNVNG-KVILYADKITDSMQKAIDETERR 571 (663)
T ss_pred EEEEeecCccccccccchHHHHHHHHhhccCC-eEEEEchhhhHHHHHHHHHHHHH
Confidence 999999763 778899999999994322 44444444456677666655444
No 115
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=2.8e-13 Score=147.47 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=98.2
Q ss_pred cchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 006698 421 GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498 (635)
Q Consensus 421 s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll 498 (635)
..|..++.+-+... .|..|||||.++...+.+.+.|.+. |+++..++|.....+++.+.+.|+. |. | +
T Consensus 427 ~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~-----gi~h~vLnak~~q~Ea~iia~Ag~~--G~--V-t 496 (896)
T PRK13104 427 ADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKE-----NIKHQVLNAKFHEKEAQIIAEAGRP--GA--V-T 496 (896)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHc-----CCCeEeecCCCChHHHHHHHhCCCC--Cc--E-E
Confidence 45777777766554 8999999999999999999999998 9999999999999999999999997 42 4 4
Q ss_pred EccCCcccccccc-c-------------------------------------CCeEEEeCCCCChhhHHhhhhhhhhcCC
Q 006698 499 ASTKACCEGINLV-G-------------------------------------ASRVVLLDVVWNPFVERQAISRAYRLGQ 540 (635)
Q Consensus 499 ~st~~~~~GlnL~-~-------------------------------------a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ 540 (635)
++|+.+|.|+|+. + .=+||--+.+-|--.+.|..||++|+|.
T Consensus 497 IATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGD 576 (896)
T PRK13104 497 IATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGD 576 (896)
T ss_pred EeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCC
Confidence 4799999999976 2 3367778889999999999999999998
Q ss_pred cceEE
Q 006698 541 KRVVH 545 (635)
Q Consensus 541 ~~~V~ 545 (635)
.=...
T Consensus 577 PGss~ 581 (896)
T PRK13104 577 PGSSR 581 (896)
T ss_pred CCceE
Confidence 75443
No 116
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.58 E-value=2.1e-13 Score=132.38 Aligned_cols=327 Identities=15% Similarity=0.082 Sum_probs=199.7
Q ss_pred cHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHHHH
Q 006698 71 FPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLTWE 149 (635)
Q Consensus 71 ~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qW~ 149 (635)
-|-|..|+.-+.+. ...+.+++++|+||++.--.- .++ ..+-++||.| ..|+....
T Consensus 22 s~LQE~A~~c~VK~------------------k~DVyVsMPTGaGKSLCyQLP--aL~---~~gITIV~SPLiALIkDQi 78 (641)
T KOG0352|consen 22 SRLQEQAINCIVKR------------------KCDVYVSMPTGAGKSLCYQLP--ALV---HGGITIVISPLIALIKDQI 78 (641)
T ss_pred ChHHHHHHHHHHhc------------------cCcEEEeccCCCchhhhhhch--HHH---hCCeEEEehHHHHHHHHHH
Confidence 36799999887653 678999999999999432111 111 2335688888 66777667
Q ss_pred HHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhhhh
Q 006698 150 EEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGIL 229 (635)
Q Consensus 150 ~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~~~ 229 (635)
+.+.+. .+++..+++. .+..+..+. +..+...+ ....++-+|++......-.+-+..+.
T Consensus 79 DHL~~L--KVp~~SLNSK-lSt~ER~ri---~~DL~~ek---------------p~~K~LYITPE~AAt~~FQ~lLn~L~ 137 (641)
T KOG0352|consen 79 DHLKRL--KVPCESLNSK-LSTVERSRI---MGDLAKEK---------------PTIKMLYITPEGAATDGFQKLLNGLA 137 (641)
T ss_pred HHHHhc--CCchhHhcch-hhHHHHHHH---HHHHHhcC---------------CceeEEEEchhhhhhhhHHHHHHHHh
Confidence 777664 3444444432 222233333 23332222 23346666776543322222222232
Q ss_pred cc-CCCEEEEeCCCcCCCc------ccHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhh-hhhHHHHH-hh
Q 006698 230 LD-LPGLFVFDEGHTPRND------DTCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEF-GEVLRTVR-KS 299 (635)
Q Consensus 230 ~~-~~~~vIvDEaH~~kn~------~s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~-~~~~~~~~-~~ 299 (635)
.. ...++||||||-...+ .-...-+++.. .....++||||--..--+|+|.+|.+-+|-- |.....-. -|
T Consensus 138 ~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLF 217 (641)
T KOG0352|consen 138 NRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLF 217 (641)
T ss_pred hhceeeeEEechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhh
Confidence 22 2588999999976432 22222333332 4556789999988888899999998877742 11110000 00
Q ss_pred hhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhH
Q 006698 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSF 379 (635)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~ 379 (635)
.. -.|+.+..
T Consensus 218 YD------------------------------------------------------------------~~~K~~I~---- 227 (641)
T KOG0352|consen 218 YD------------------------------------------------------------------NHMKSFIT---- 227 (641)
T ss_pred HH------------------------------------------------------------------HHHHHHhh----
Confidence 00 00000000
Q ss_pred HHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhh
Q 006698 380 VELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR 459 (635)
Q Consensus 380 ~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~ 459 (635)
.....+.-.|.|..- .. +.... ..| -...--||||..++..+.+.-.|...
T Consensus 228 -D~~~~LaDF~~~~LG-~~-------------~~~~~----~~K----------~~~GCGIVYCRTR~~cEq~AI~l~~~ 278 (641)
T KOG0352|consen 228 -DCLTVLADFSSSNLG-KH-------------EKASQ----NKK----------TFTGCGIVYCRTRNECEQVAIMLEIA 278 (641)
T ss_pred -hHhHhHHHHHHHhcC-Ch-------------hhhhc----CCC----------CcCcceEEEeccHHHHHHHHHHhhhc
Confidence 000001111100000 00 00000 000 02235799999999999999999987
Q ss_pred hcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcC
Q 006698 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLG 539 (635)
Q Consensus 460 ~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~G 539 (635)
|+...-++.+....+|..+.+.|-+ +++.|+. .|-..|.|+|-++...||+.+++-|.+-|-|--||++|-|
T Consensus 279 -----Gi~A~AYHAGLK~~ERTeVQe~WM~--~~~PvI~-AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDG 350 (641)
T KOG0352|consen 279 -----GIPAMAYHAGLKKKERTEVQEKWMN--NEIPVIA-ATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDG 350 (641)
T ss_pred -----CcchHHHhcccccchhHHHHHHHhc--CCCCEEE-EEeccccccCCcceeEEEecCchhhhHHHHHhccccccCC
Confidence 9999999999999999999999987 5566666 5889999999999999999999999999999999999999
Q ss_pred CcceEEEEE
Q 006698 540 QKRVVHVYH 548 (635)
Q Consensus 540 Q~~~V~vy~ 548 (635)
-..=++.|+
T Consensus 351 k~SyCRLYY 359 (641)
T KOG0352|consen 351 KRSYCRLYY 359 (641)
T ss_pred Cccceeeee
Confidence 776666654
No 117
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.57 E-value=2.1e-13 Score=155.28 Aligned_cols=112 Identities=20% Similarity=0.176 Sum_probs=88.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCC
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGAS 514 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~ 514 (635)
....+|||......++.+.+.|.+... .+..+..++|+++.++|+++ |+.. +..+|+| +|++++.||++.+..
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~--~~~~VlpLhg~Ls~~eQ~~v---f~~~-~~rkIVL-ATNIAEtSLTIpgV~ 350 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNL--RHTEILPLYARLSNKEQQRV---FQPH-SGRRIVL-ATNVAETSLTVPGIH 350 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCC--CCcEEEeccCCCCHHHHHHH---hCCC-CCceEEE-eccHHHhccccCCee
Confidence 446899999999999999999987521 24668889999999999887 4432 2345555 799999999999999
Q ss_pred eEEEeCCC-----------------C-ChhhHHhhhhhhhhcCCcceEEEEEEEeCCChH
Q 006698 515 RVVLLDVV-----------------W-NPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556 (635)
Q Consensus 515 ~vi~~d~~-----------------w-np~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiE 556 (635)
+||.++.+ | +-+.+.||.||++|.| +-.+|+|+++...+
T Consensus 351 yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 351 YVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFN 407 (1283)
T ss_pred EEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHH
Confidence 99987732 1 4468999999999987 77789999865443
No 118
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.57 E-value=3.2e-12 Score=140.49 Aligned_cols=122 Identities=21% Similarity=0.169 Sum_probs=102.8
Q ss_pred cchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 006698 421 GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498 (635)
Q Consensus 421 s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll 498 (635)
..++..+.+.+... .+.++||||.....++.|.+.|... |+++..++|.++..+|..+++.|+. |.+.|++
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~-----gi~~~~~h~~~~~~~R~~~l~~f~~--g~i~vlV 501 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKEL-----GIKVRYLHSDIDTLERVEIIRDLRL--GEFDVLV 501 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhc-----ceeEEEEECCCCHHHHHHHHHHHHc--CCceEEE
Confidence 34556666666554 7899999999999999999999987 9999999999999999999999987 5677766
Q ss_pred EccCCcccccccccCCeEEEeCC-----CCChhhHHhhhhhhhhcCCcceEEEEEEEeCC
Q 006698 499 ASTKACCEGINLVGASRVVLLDV-----VWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553 (635)
Q Consensus 499 ~st~~~~~GlnL~~a~~vi~~d~-----~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~ 553 (635)
+|..+++|++++.++.||++|. +-++..+.|++||++|- +.-.++.|+...
T Consensus 502 -~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~---~~G~~i~~~~~~ 557 (652)
T PRK05298 502 -GINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN---VNGKVILYADKI 557 (652)
T ss_pred -EeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC---CCCEEEEEecCC
Confidence 6999999999999999999996 56889999999999994 234456666643
No 119
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=2.7e-13 Score=146.86 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=95.5
Q ss_pred cchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 006698 421 GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498 (635)
Q Consensus 421 s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll 498 (635)
..|..++.+.+... .+..|||||+++...+.|...|.+. |+++..++|.....+++.+...++. |. |+|
T Consensus 423 ~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~-----gi~~~~Lna~~~~~Ea~ii~~ag~~--g~--VtI 493 (796)
T PRK12906 423 DSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEA-----GIPHAVLNAKNHAKEAEIIMNAGQR--GA--VTI 493 (796)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHC-----CCCeeEecCCcHHHHHHHHHhcCCC--ce--EEE
Confidence 45788888877654 8999999999999999999999997 9999999999876666555555654 33 444
Q ss_pred EccCCcccccccc---cCC-----eEEEeCCCCChhhHHhhhhhhhhcCCcceE
Q 006698 499 ASTKACCEGINLV---GAS-----RVVLLDVVWNPFVERQAISRAYRLGQKRVV 544 (635)
Q Consensus 499 ~st~~~~~GlnL~---~a~-----~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V 544 (635)
+|+.+|.|+|+. ... +||.++.|-|...+.|+.||++|.|..=..
T Consensus 494 -ATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s 546 (796)
T PRK12906 494 -ATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSS 546 (796)
T ss_pred -EeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcce
Confidence 799999999994 666 999999999999999999999999976433
No 120
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.55 E-value=4.3e-13 Score=149.44 Aligned_cols=131 Identities=16% Similarity=0.203 Sum_probs=101.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcC--CCCCcEEEEEccCCccccccccc
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND--PSSQARIMLASTKACCEGINLVG 512 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~--~~~~~~vll~st~~~~~GlnL~~ 512 (635)
.+.||+|-++.+..+..+.+.|+.. +..+..+|+..+...|.+.++.... ...+.. ++++|++...|+|+.
T Consensus 439 ~~~kvlvI~NTV~~Aie~Y~~Lk~~-----~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~-IvVaTQVIEagvDid- 511 (733)
T COG1203 439 EGKKVLVIVNTVDRAIELYEKLKEK-----GPKVLLLHSRFTLKDREEKERELKKLFKQNEGF-IVVATQVIEAGVDID- 511 (733)
T ss_pred cCCcEEEEEecHHHHHHHHHHHHhc-----CCCEEEEecccchhhHHHHHHHHHHHHhccCCe-EEEEeeEEEEEeccc-
Confidence 7899999999999999999999986 4479999999999999998885442 112344 455899999999998
Q ss_pred CCeEEEeCCCCChhhHHhhhhhhhhcC--CcceEEEEEEEeCCChHHHHHHHHHHhhhhhcccc
Q 006698 513 ASRVVLLDVVWNPFVERQAISRAYRLG--QKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVF 574 (635)
Q Consensus 513 a~~vi~~d~~wnp~~~~Qa~gR~~R~G--Q~~~V~vy~li~~~tiEe~i~~~~~~K~~~~~~~~ 574 (635)
.+.+|- |+. -.....||.||++|-| ....+++|...-....+...+.....+........
T Consensus 512 fd~mIT-e~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (733)
T COG1203 512 FDVLIT-ELA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKSLEELP 573 (733)
T ss_pred cCeeee-cCC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhccccccC
Confidence 565543 321 3456899999999999 45588888888888888888887777766555444
No 121
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.55 E-value=1.9e-13 Score=130.61 Aligned_cols=320 Identities=15% Similarity=0.078 Sum_probs=205.2
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~ 146 (635)
.+.||-|+++++..+. +..++|..++|-||++.-- +-..-..+-+||||| .+|++
T Consensus 93 ekfrplq~~ain~~ma-------------------~ed~~lil~tgggkslcyq-----lpal~adg~alvi~plislme 148 (695)
T KOG0353|consen 93 EKFRPLQLAAINATMA-------------------GEDAFLILPTGGGKSLCYQ-----LPALCADGFALVICPLISLME 148 (695)
T ss_pred HhcChhHHHHhhhhhc-------------------cCceEEEEeCCCccchhhh-----hhHHhcCCceEeechhHHHHH
Confidence 4689999999987643 5688999999999994321 111123455799999 88888
Q ss_pred HHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcc-hhh
Q 006698 147 TWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG-DEL 225 (635)
Q Consensus 147 qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~-~~~ 225 (635)
...-.++..+.+......+.. + +....+.+.. .+.......+-+|++.+.+-... ..+
T Consensus 149 dqil~lkqlgi~as~lnanss----k--e~~k~v~~~i---------------~nkdse~kliyvtpekiaksk~~mnkl 207 (695)
T KOG0353|consen 149 DQILQLKQLGIDASMLNANSS----K--EEAKRVEAAI---------------TNKDSEFKLIYVTPEKIAKSKKFMNKL 207 (695)
T ss_pred HHHHHHHHhCcchhhccCccc----H--HHHHHHHHHH---------------cCCCceeEEEEecHHHHHHHHHHHHHH
Confidence 877778877655433332221 1 1111111111 01123455677777765542211 111
Q ss_pred -hhhhccCCCEEEEeCCCcCCCc-------ccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHH
Q 006698 226 -SGILLDLPGLFVFDEGHTPRND-------DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVR 297 (635)
Q Consensus 226 -~~~~~~~~~~vIvDEaH~~kn~-------~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~ 297 (635)
+.+....|.++.+||.|-+..+ .+.+.-.-++++....++||||...+-+.|.-.++..-..-.
T Consensus 208 eka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~t-------- 279 (695)
T KOG0353|consen 208 EKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFT-------- 279 (695)
T ss_pred HHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhhe--------
Confidence 2233445789999999976432 222233334457788999999998777777655544221000
Q ss_pred hhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhh
Q 006698 298 KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVK 377 (635)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~ 377 (635)
.|- . -.-|.....++.-+-+.
T Consensus 280 -----------------------------------------f~a---~--fnr~nl~yev~qkp~n~------------- 300 (695)
T KOG0353|consen 280 -----------------------------------------FRA---G--FNRPNLKYEVRQKPGNE------------- 300 (695)
T ss_pred -----------------------------------------eec---c--cCCCCceeEeeeCCCCh-------------
Confidence 000 0 01111111111111000
Q ss_pred hHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc-CCCeEEEEcCChhHHHHHHHHH
Q 006698 378 SFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS-TNEKVLVFSQYIEPLTLIMEQL 456 (635)
Q Consensus 378 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~-~~~kviIFs~~~~~~~~l~~~L 456 (635)
..-.+.+..++... .|..-||||-+..-.+.+...|
T Consensus 301 -------------------------------------------dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~al 337 (695)
T KOG0353|consen 301 -------------------------------------------DDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKAL 337 (695)
T ss_pred -------------------------------------------HHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHH
Confidence 00111122223322 7888999999999999999999
Q ss_pred HhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHh------
Q 006698 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQ------ 530 (635)
Q Consensus 457 ~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Q------ 530 (635)
..+ |+....++..+.+++|..+-..|-. ++++|+++ |-+.|.|||-++...||+-.+|-+...|-|
T Consensus 338 kn~-----gi~a~~yha~lep~dks~~hq~w~a--~eiqviva-tvafgmgidkpdvrfvihhsl~ksienyyqasaril 409 (695)
T KOG0353|consen 338 KNH-----GIHAGAYHANLEPEDKSGAHQGWIA--GEIQVIVA-TVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARIL 409 (695)
T ss_pred Hhc-----CccccccccccCccccccccccccc--cceEEEEE-EeeecccCCCCCeeEEEecccchhHHHHHHHHHHHH
Confidence 987 9999999999999999998888886 67998885 889999999999999999999999999999
Q ss_pred -------------------------------------hhhhhhhcCCcceEEEEEEE
Q 006698 531 -------------------------------------AISRAYRLGQKRVVHVYHLI 550 (635)
Q Consensus 531 -------------------------------------a~gR~~R~GQ~~~V~vy~li 550 (635)
--||++|-|++.++..|+=+
T Consensus 410 lrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~ 466 (695)
T KOG0353|consen 410 LRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGF 466 (695)
T ss_pred HHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEech
Confidence 56888999999877666543
No 122
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=1.2e-12 Score=142.43 Aligned_cols=115 Identities=17% Similarity=0.168 Sum_probs=98.2
Q ss_pred cchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 006698 421 GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498 (635)
Q Consensus 421 s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll 498 (635)
..|..++.+.+... .+.+|||||++....+.+...|.+. |+++..++|. ..+|+..+..|.. +...|+|
T Consensus 413 ~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~-----gi~~~vLnak--q~eREa~Iia~Ag--~~g~VtI 483 (830)
T PRK12904 413 KEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKA-----GIPHNVLNAK--NHEREAEIIAQAG--RPGAVTI 483 (830)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC-----CCceEeccCc--hHHHHHHHHHhcC--CCceEEE
Confidence 45888888888763 8899999999999999999999997 9999999996 6789999999987 3456666
Q ss_pred EccCCcccccccc-c-------------------------------------CCeEEEeCCCCChhhHHhhhhhhhhcCC
Q 006698 499 ASTKACCEGINLV-G-------------------------------------ASRVVLLDVVWNPFVERQAISRAYRLGQ 540 (635)
Q Consensus 499 ~st~~~~~GlnL~-~-------------------------------------a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ 540 (635)
+|+.+|.|+|+. + .=+||.-+.+-|--.+.|..||++|+|.
T Consensus 484 -ATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGd 562 (830)
T PRK12904 484 -ATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGD 562 (830)
T ss_pred -ecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCC
Confidence 699999999976 3 4467888889999999999999999998
Q ss_pred cceEE
Q 006698 541 KRVVH 545 (635)
Q Consensus 541 ~~~V~ 545 (635)
.=...
T Consensus 563 pGss~ 567 (830)
T PRK12904 563 PGSSR 567 (830)
T ss_pred CCcee
Confidence 75444
No 123
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.53 E-value=6.3e-14 Score=135.99 Aligned_cols=318 Identities=20% Similarity=0.222 Sum_probs=204.8
Q ss_pred HhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCC--CCCcEEEeC-cc
Q 006698 67 RKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP--RCRPVIIAP-RS 143 (635)
Q Consensus 67 ~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~--~~~~LIv~P-~~ 143 (635)
-+.+.|-|+..+.-+++ ++...=..-+|+|||..-+.-+..-+..+. .-+.||+.| .-
T Consensus 41 ~~~ptpiqRKTipliLe-------------------~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilsptre 101 (529)
T KOG0337|consen 41 FNTPTPIQRKTIPLILE-------------------GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRE 101 (529)
T ss_pred cCCCCchhcccccceee-------------------ccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHH
Confidence 34578888888876654 334444566899999666555544444333 236799999 55
Q ss_pred chHHHHHHHHHhcC--CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhc
Q 006698 144 MLLTWEEEFKKWGI--DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221 (635)
Q Consensus 144 l~~qW~~E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~ 221 (635)
|..|-.+-.+.++- +++...+ ..|...+..+..+ ..+.|+++.|...+.-...
T Consensus 102 La~qtlkvvkdlgrgt~lr~s~~----~ggD~~eeqf~~l---------------------~~npDii~ATpgr~~h~~v 156 (529)
T KOG0337|consen 102 LALQTLKVVKDLGRGTKLRQSLL----VGGDSIEEQFILL---------------------NENPDIIIATPGRLLHLGV 156 (529)
T ss_pred HHHHHHHHHHHhccccchhhhhh----cccchHHHHHHHh---------------------ccCCCEEEecCceeeeeeh
Confidence 66666665555532 2222111 1122222222111 2468899988876543221
Q ss_pred chhhhhhhccCCCEEEEeCCCcCCC--cccHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHh
Q 006698 222 GDELSGILLDLPGLFVFDEGHTPRN--DDTCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK 298 (635)
Q Consensus 222 ~~~~~~~~~~~~~~vIvDEaH~~kn--~~s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~ 298 (635)
. -.+......+||+|||.++-. ..-+..+.+.++ .....+++|||- +.+| +.|...
T Consensus 157 e---m~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatl----p~~l---v~faka----------- 215 (529)
T KOG0337|consen 157 E---MTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATL----PRDL---VDFAKA----------- 215 (529)
T ss_pred h---eeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccC----chhh---HHHHHc-----------
Confidence 1 112333467899999999843 446677778888 445789999995 1111 011100
Q ss_pred hhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEE-EEEeCCcHHHHHHHHHHhhhh
Q 006698 299 SGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHS-VVILQPDEFQKRLCKAVEGVK 377 (635)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~-~v~~~~s~~q~~~y~~~~~~~ 377 (635)
- ..|+.... .+.-..++
T Consensus 216 ----------------------------------G---------------l~~p~lVRldvetkise------------- 233 (529)
T KOG0337|consen 216 ----------------------------------G---------------LVPPVLVRLDVETKISE------------- 233 (529)
T ss_pred ----------------------------------c---------------CCCCceEEeehhhhcch-------------
Confidence 0 01111110 00001111
Q ss_pred hHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc-CCCeEEEEcCChhHHHHHHHHH
Q 006698 378 SFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS-TNEKVLVFSQYIEPLTLIMEQL 456 (635)
Q Consensus 378 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~-~~~kviIFs~~~~~~~~l~~~L 456 (635)
.+...........|..+|+.++... ..++.+||+.....++++...|
T Consensus 234 --------------------------------~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll 281 (529)
T KOG0337|consen 234 --------------------------------LLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLL 281 (529)
T ss_pred --------------------------------hhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHH
Confidence 0111111122345888888888876 6678999999999999999999
Q ss_pred HhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhh
Q 006698 457 RHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAY 536 (635)
Q Consensus 457 ~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~ 536 (635)
... |+....+.|++.+..|..-+.+|+.. ...+ ++.|++++.|++++-.+.||+||.|-.+..+..|+||+.
T Consensus 282 ~~~-----g~~~s~iysslD~~aRk~~~~~F~~~--k~~~-lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~a 353 (529)
T KOG0337|consen 282 RDF-----GGEGSDIYSSLDQEARKINGRDFRGR--KTSI-LVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVA 353 (529)
T ss_pred Hhc-----CCCccccccccChHhhhhccccccCC--ccce-EEEehhhhccCCCccccccccccCCCCCceEEEEecchh
Confidence 987 99999999999999999899999863 3444 447999999999999999999999999999999999999
Q ss_pred hcCCcceEEEEEEEeCC
Q 006698 537 RLGQKRVVHVYHLITSE 553 (635)
Q Consensus 537 R~GQ~~~V~vy~li~~~ 553 (635)
|-|. ....|-+++..
T Consensus 354 ragr--tg~aYs~V~~~ 368 (529)
T KOG0337|consen 354 RAGR--TGRAYSLVAST 368 (529)
T ss_pred hccc--cceEEEEEecc
Confidence 9985 44556676644
No 124
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.52 E-value=9.4e-14 Score=131.56 Aligned_cols=156 Identities=20% Similarity=0.216 Sum_probs=102.8
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC---CCCCcEEEeC-ccc
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH---PRCRPVIIAP-RSM 144 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~---~~~~~LIv~P-~~l 144 (635)
.|++||.+++..+.+ ++++++..++|+|||++.+..+...+... ...+++|||| ..+
T Consensus 21 ~~~~~Q~~~~~~~~~-------------------~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L 81 (203)
T cd00268 21 KPTPIQARAIPPLLS-------------------GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTREL 81 (203)
T ss_pred CCCHHHHHHHHHHhc-------------------CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHH
Confidence 589999999988854 56899999999999988655444444333 4457899999 778
Q ss_pred hHHHHHHHHHhcC--CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcc
Q 006698 145 LLTWEEEFKKWGI--DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222 (635)
Q Consensus 145 ~~qW~~E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~ 222 (635)
+.|+...+..+.. +..+..+.+.. ...... ..+....+++++|.+.+......
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---------------------~~~~~~~~iiv~T~~~l~~~l~~ 136 (203)
T cd00268 82 ALQIAEVARKLGKHTNLKVVVIYGGT----SIDKQI---------------------RKLKRGPHIVVATPGRLLDLLER 136 (203)
T ss_pred HHHHHHHHHHHhccCCceEEEEECCC----CHHHHH---------------------HHhcCCCCEEEEChHHHHHHHHc
Confidence 8999999988854 23333232211 000000 01123678999999887776543
Q ss_pred hhhhhhhccCCCEEEEeCCCcCCCcc-cH-HHHHHHhc-ccCcEEEEecccC
Q 006698 223 DELSGILLDLPGLFVFDEGHTPRNDD-TC-MFKALSRI-KTRRRIILSGTPF 271 (635)
Q Consensus 223 ~~~~~~~~~~~~~vIvDEaH~~kn~~-s~-~~~~l~~l-~~~~~l~LTgTP~ 271 (635)
.. .....++++|+||+|.+.+.. .. ....+..+ +....+++||||-
T Consensus 137 ~~---~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 137 GK---LDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred CC---CChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 22 223457999999999986542 11 22223334 4567899999984
No 125
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.50 E-value=2.1e-12 Score=140.33 Aligned_cols=112 Identities=15% Similarity=0.116 Sum_probs=96.8
Q ss_pred cchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 006698 421 GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498 (635)
Q Consensus 421 s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll 498 (635)
..|..++.+-+... .|.+|||||++....+.+...|... |+++..+++..+..++..+.+.|+. |. ++
T Consensus 432 ~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~-----gi~~~vLnak~~~~Ea~ii~~Ag~~--G~---Vt 501 (908)
T PRK13107 432 DEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKE-----KIPHEVLNAKFHEREAEIVAQAGRT--GA---VT 501 (908)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHC-----CCCeEeccCcccHHHHHHHHhCCCC--Cc---EE
Confidence 45777777666554 8999999999999999999999997 9999999999999999999999997 43 44
Q ss_pred EccCCcccccccc-------------------------------------cCCeEEEeCCCCChhhHHhhhhhhhhcCCc
Q 006698 499 ASTKACCEGINLV-------------------------------------GASRVVLLDVVWNPFVERQAISRAYRLGQK 541 (635)
Q Consensus 499 ~st~~~~~GlnL~-------------------------------------~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~ 541 (635)
++|..+|.|+|+. +.=+||--+.+-|--.+.|..||++|+|..
T Consensus 502 IATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDP 581 (908)
T PRK13107 502 IATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDA 581 (908)
T ss_pred EecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCC
Confidence 5799999999976 234688888999999999999999999987
Q ss_pred c
Q 006698 542 R 542 (635)
Q Consensus 542 ~ 542 (635)
=
T Consensus 582 G 582 (908)
T PRK13107 582 G 582 (908)
T ss_pred C
Confidence 5
No 126
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.50 E-value=6.4e-14 Score=111.38 Aligned_cols=81 Identities=27% Similarity=0.463 Sum_probs=72.2
Q ss_pred HHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHh
Q 006698 451 LIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQ 530 (635)
Q Consensus 451 ~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Q 530 (635)
.+.+.|... ++.+..++|+++.++|..+++.|+++ ... +|++|+++++|+|++.++.||+++++||+..+.|
T Consensus 2 ~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~-vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q 73 (82)
T smart00490 2 ELAELLKEL-----GIKVARLHGGLSQEEREEILEKFNNG--KIK-VLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQ 73 (82)
T ss_pred HHHHHHHHC-----CCeEEEEECCCCHHHHHHHHHHHHcC--CCe-EEEECChhhCCcChhcCCEEEEeCCCCCHHHHHH
Confidence 356677765 89999999999999999999999973 344 5558999999999999999999999999999999
Q ss_pred hhhhhhhcC
Q 006698 531 AISRAYRLG 539 (635)
Q Consensus 531 a~gR~~R~G 539 (635)
++||++|.|
T Consensus 74 ~~gR~~R~g 82 (82)
T smart00490 74 RIGRAGRAG 82 (82)
T ss_pred hhcccccCC
Confidence 999999987
No 127
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.50 E-value=9.9e-13 Score=143.03 Aligned_cols=301 Identities=19% Similarity=0.218 Sum_probs=175.2
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCC---------CCcEEEeC-ccchHHHHHHHHHhcCCCc--ccccCCCCCc
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPR---------CRPVIIAP-RSMLLTWEEEFKKWGIDIP--FYNLNKPELS 170 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~---------~~~LIv~P-~~l~~qW~~E~~~~~~~~~--v~~~~~~~~~ 170 (635)
..+.+++.++|+|||-.|+..+..-...+.. .+...|+| ++|+..|...|.++..++. |..+.+....
T Consensus 325 ~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l 404 (1674)
T KOG0951|consen 325 DENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQL 404 (1674)
T ss_pred cCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccc
Confidence 5589999999999999888666554443322 25688999 9999999999999866544 4444443333
Q ss_pred CcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhhhhccCCCEEEEeCCCcC---CCc
Q 006698 171 GKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTP---RND 247 (635)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~~~~~~~~~vIvDEaH~~---kn~ 247 (635)
+... .....|+++|++..--+.+.+.-..+ ..-++++|+||.|.+ +++
T Consensus 405 ~~~q----------------------------ieeTqVIV~TPEK~DiITRk~gdraY-~qlvrLlIIDEIHLLhDdRGp 455 (1674)
T KOG0951|consen 405 GKEQ----------------------------IEETQVIVTTPEKWDIITRKSGDRAY-EQLVRLLIIDEIHLLHDDRGP 455 (1674)
T ss_pred hhhh----------------------------hhcceeEEeccchhhhhhcccCchhH-HHHHHHHhhhhhhhcccccch
Confidence 2222 24567889998876433333111111 112478999999998 433
Q ss_pred c--cHHHHHHHhc----ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhhhhHhhhhhhhhhhhhccCc
Q 006698 248 D--TCMFKALSRI----KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANH 321 (635)
Q Consensus 248 ~--s~~~~~l~~l----~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (635)
. |-..+..++. ...+.++||||. -|..|.-+.+..-.++++. |...+
T Consensus 456 vLESIVaRt~r~ses~~e~~RlVGLSATL--PNy~DV~~Fl~v~~~glf~-------fd~sy------------------ 508 (1674)
T KOG0951|consen 456 VLESIVARTFRRSESTEEGSRLVGLSATL--PNYEDVASFLRVDPEGLFY-------FDSSY------------------ 508 (1674)
T ss_pred HHHHHHHHHHHHhhhcccCceeeeecccC--CchhhhHHHhccCcccccc-------cCccc------------------
Confidence 1 2222333333 345679999995 2345554433322233211 00000
Q ss_pred CcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCCCCCcccc
Q 006698 322 RDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFF 401 (635)
Q Consensus 322 ~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~ 401 (635)
...|-.++.+-.-.-.+..+ ...++-+
T Consensus 509 --------------------------RpvPL~qq~Igi~ek~~~~~---------------~qamNe~------------ 535 (1674)
T KOG0951|consen 509 --------------------------RPVPLKQQYIGITEKKPLKR---------------FQAMNEA------------ 535 (1674)
T ss_pred --------------------------CcCCccceEeccccCCchHH---------------HHHHHHH------------
Confidence 01121122111111111111 0001101
Q ss_pred ccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHH--------------hhhc------
Q 006698 402 ESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLR--------------HRFN------ 461 (635)
Q Consensus 402 ~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~--------------~~~~------ 461 (635)
+..++++......||||.+++......+++++ +.-.
T Consensus 536 ------------------------~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilr 591 (1674)
T KOG0951|consen 536 ------------------------CYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILR 591 (1674)
T ss_pred ------------------------HHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhh
Confidence 11233344455788888888654333333222 1100
Q ss_pred ------------ccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEE-----eCCC--
Q 006698 462 ------------WREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVL-----LDVV-- 522 (635)
Q Consensus 462 ------------~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~-----~d~~-- 522 (635)
..-.+.+..-|.+++..+|...-+.|.+ |.++|++ ||...+-|+||+ |++||+ |||.
T Consensus 592 tea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~--g~iqvlv-statlawgvnlp-ahtViikgtqvy~pekg 667 (1674)
T KOG0951|consen 592 TEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFAD--GHIQVLV-STATLAWGVNLP-AHTVIIKGTQVYDPEKG 667 (1674)
T ss_pred hhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhc--CceeEEE-eehhhhhhcCCC-cceEEecCccccCcccC
Confidence 0003557788999999999999999998 7788887 899999999999 566665 5654
Q ss_pred -C---ChhhHHhhhhhhhhcCC
Q 006698 523 -W---NPFVERQAISRAYRLGQ 540 (635)
Q Consensus 523 -w---np~~~~Qa~gR~~R~GQ 540 (635)
| +|....|+.||++|.+-
T Consensus 668 ~w~elsp~dv~qmlgragrp~~ 689 (1674)
T KOG0951|consen 668 RWTELSPLDVMQMLGRAGRPQY 689 (1674)
T ss_pred ccccCCHHHHHHHHhhcCCCcc
Confidence 3 67889999999999763
No 128
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.50 E-value=1.2e-13 Score=126.82 Aligned_cols=158 Identities=24% Similarity=0.298 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHHHHH
Q 006698 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLTWEE 150 (635)
Q Consensus 72 p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qW~~ 150 (635)
|+|.+++.-+.. ++..++..++|+|||..++..+...+..+....++|++| ..++.|-.+
T Consensus 2 ~~Q~~~~~~i~~-------------------~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~ 62 (169)
T PF00270_consen 2 PLQQEAIEAIIS-------------------GKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFE 62 (169)
T ss_dssp HHHHHHHHHHHT-------------------TSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHc-------------------CCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccc
Confidence 899999988863 567999999999999998877666555554457899999 778899999
Q ss_pred HHHHhcCC--CcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhhh
Q 006698 151 EFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGI 228 (635)
Q Consensus 151 E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~~ 228 (635)
++.++... .++..+.+.... ........ ....+++++|++.|......... .+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---------------------~~~~~ilv~T~~~l~~~~~~~~~-~~ 117 (169)
T PF00270_consen 63 RLRKFFSNTNVRVVLLHGGQSI---SEDQREVL---------------------SNQADILVTTPEQLLDLISNGKI-NI 117 (169)
T ss_dssp HHHHHTTTTTSSEEEESTTSCH---HHHHHHHH---------------------HTTSSEEEEEHHHHHHHHHTTSS-TG
T ss_pred cccccccccccccccccccccc---cccccccc---------------------cccccccccCcchhhcccccccc-cc
Confidence 99988654 333333221110 00000000 13689999999999887755222 22
Q ss_pred hccCCCEEEEeCCCcCCCc--ccHHHHHHHhc---ccCcEEEEecccCCCChh
Q 006698 229 LLDLPGLFVFDEGHTPRND--DTCMFKALSRI---KTRRRIILSGTPFQNNFQ 276 (635)
Q Consensus 229 ~~~~~~~vIvDEaH~~kn~--~s~~~~~l~~l---~~~~~l~LTgTP~~n~~~ 276 (635)
...++||+||+|.+... .......+..+ +..+.+++||||- .+++
T Consensus 118 --~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 118 --SRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVE 167 (169)
T ss_dssp --TTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHH
T ss_pred --ccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHh
Confidence 22699999999998653 22233333333 3467999999995 4443
No 129
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.43 E-value=2.2e-11 Score=133.04 Aligned_cols=112 Identities=16% Similarity=0.140 Sum_probs=95.8
Q ss_pred cchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 006698 421 GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498 (635)
Q Consensus 421 s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll 498 (635)
..|..++.+.+... .+.+|||||+++...+.|.+.|... |+++..+++ ...+|+..+..|... ...|+|
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~-----gI~h~vLna--kq~~REa~Iia~AG~--~g~VtI 651 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAK-----RIAHNVLNA--KQHDREAEIVAEAGQ--KGAVTI 651 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHc-----CCCceeecC--CHHHhHHHHHHhcCC--CCeEEE
Confidence 35888888888655 8999999999999999999999997 999999998 477999999999863 355666
Q ss_pred EccCCccccccccc---CC-----eEEEeCCCCChhhHHhhhhhhhhcCCcc
Q 006698 499 ASTKACCEGINLVG---AS-----RVVLLDVVWNPFVERQAISRAYRLGQKR 542 (635)
Q Consensus 499 ~st~~~~~GlnL~~---a~-----~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~ 542 (635)
+|+.+|.|+|+.- +. +||..+.+-+...+.|++||++|.|..=
T Consensus 652 -ATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpG 702 (1025)
T PRK12900 652 -ATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPG 702 (1025)
T ss_pred -eccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCc
Confidence 6999999999982 32 3488899999999999999999999764
No 130
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=99.38 E-value=1.7e-11 Score=117.39 Aligned_cols=248 Identities=17% Similarity=0.163 Sum_probs=147.3
Q ss_pred ecChhH--HhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEE
Q 006698 61 LVPRDV--RKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVI 138 (635)
Q Consensus 61 ~~p~~l--~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LI 138 (635)
.+|..+ ...|-.-|+|+|-+..+++...+ ......|.+|+|.+|.||-.++.++|......+.. +++.
T Consensus 27 ~lp~~~~~~g~LS~~QLEaV~yA~q~h~~~L---------p~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~-r~vw 96 (303)
T PF13872_consen 27 HLPEEVIDSGLLSALQLEAVIYACQRHEQIL---------PGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRK-RAVW 96 (303)
T ss_pred CCCHHHHhcccccHHHHHHHHHHHHHHHhhc---------ccccCcEEEeccCCCcCccchhHHHHHHHHHcCCC-ceEE
Confidence 456533 45699999999999988765321 11236789999999999999999999887777765 4555
Q ss_pred Ee-CccchHHHHHHHHHhcC-CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHH
Q 006698 139 IA-PRSMLLTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLF 216 (635)
Q Consensus 139 v~-P~~l~~qW~~E~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~ 216 (635)
|. ...|...-.+.+.-.+. .+.+..++....... -....+|+.+||+++
T Consensus 97 vS~s~dL~~Da~RDl~DIG~~~i~v~~l~~~~~~~~-----------------------------~~~~~GvlF~TYs~L 147 (303)
T PF13872_consen 97 VSVSNDLKYDAERDLRDIGADNIPVHPLNKFKYGDI-----------------------------IRLKEGVLFSTYSTL 147 (303)
T ss_pred EECChhhhhHHHHHHHHhCCCcccceechhhccCcC-----------------------------CCCCCCccchhHHHH
Confidence 54 47788777777775532 222332222111100 013568999999998
Q ss_pred HHhhcc-----hhhhh---hhccCC-CEEEEeCCCcCCCccc------HHHHHHHhc----ccCcEEEEecccCCCChhh
Q 006698 217 EKLVSG-----DELSG---ILLDLP-GLFVFDEGHTPRNDDT------CMFKALSRI----KTRRRIILSGTPFQNNFQE 277 (635)
Q Consensus 217 ~~~~~~-----~~~~~---~~~~~~-~~vIvDEaH~~kn~~s------~~~~~l~~l----~~~~~l~LTgTP~~n~~~e 277 (635)
...... ..+.. ++...| .+||+||||+.||..+ +...++..| +..+++..|||... |
T Consensus 148 ~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgas----e 223 (303)
T PF13872_consen 148 ISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGAS----E 223 (303)
T ss_pred HhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccC----C
Confidence 876421 22222 232334 6899999999999644 566665544 55679999999853 2
Q ss_pred HHHHHHhhhhhhhh---hHHHHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHh--hcchhhhcccccccccCCC
Q 006698 278 LENTLSLVRQEFGE---VLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEK--IAPFVNVHKGTVLQESLPG 352 (635)
Q Consensus 278 l~~ll~~l~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--l~~~~~rr~~~~~~~~lp~ 352 (635)
.-+|..+.+-++++ .+..+.+|...+..+. ....+.+... .....++|.. .+-.
T Consensus 224 p~NmaYm~RLGLWG~gtpf~~~~~f~~a~~~gG----------------v~amE~vA~dlKa~G~yiaR~L-----Sf~g 282 (303)
T PF13872_consen 224 PRNMAYMSRLGLWGPGTPFPDFDDFLEAMEKGG----------------VGAMEMVAMDLKARGMYIARQL-----SFEG 282 (303)
T ss_pred CceeeeeeeccccCCCCCCCCHHHHHHHHHhcC----------------chHHHHHHHHHHhcchheeeec-----ccCC
Confidence 22222222223333 1222333433332221 1111112111 1223333322 3445
Q ss_pred ceEEEEEeCCcHHHHHHHHH
Q 006698 353 LRHSVVILQPDEFQKRLCKA 372 (635)
Q Consensus 353 ~~~~~v~~~~s~~q~~~y~~ 372 (635)
..-.++.+++++.|.++|+.
T Consensus 283 vef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 283 VEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred ceEEEEEecCCHHHHHHhcC
Confidence 56678889999999999975
No 131
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=99.36 E-value=1.6e-11 Score=127.83 Aligned_cols=255 Identities=15% Similarity=0.142 Sum_probs=150.8
Q ss_pred cChhHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcE-EEe
Q 006698 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPV-IIA 140 (635)
Q Consensus 62 ~p~~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~L-Iv~ 140 (635)
+|..-...|-.-|+++|-+.++.+..- -.+...-|.+|+|.-|.||-.+...+|...+-.++ ++.| |-|
T Consensus 257 lP~i~sg~lSALQLEav~YAcQ~He~l---------lPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGR-KrAlW~SV 326 (1300)
T KOG1513|consen 257 LPSIDSGHLSALQLEAVTYACQAHEVL---------LPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGR-KRALWFSV 326 (1300)
T ss_pred cccCcccchhHHHHHHHHHHHhhhhhc---------CCCCccceeeeccCcccCCCceeEEEEehhhhccc-ceeEEEEe
Confidence 553234568889999999998864321 01122447899999999998777666655444444 4555 455
Q ss_pred CccchHHHHHHHHHhc-CCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHh
Q 006698 141 PRSMLLTWEEEFKKWG-IDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219 (635)
Q Consensus 141 P~~l~~qW~~E~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~ 219 (635)
.+-|...=.+.+...+ ++++|+.++...+..-..+.. -..+.+|+.+||..+.-.
T Consensus 327 SsDLKfDAERDL~DigA~~I~V~alnK~KYakIss~en------------------------~n~krGViFaTYtaLIGE 382 (1300)
T KOG1513|consen 327 SSDLKFDAERDLRDIGATGIAVHALNKFKYAKISSKEN------------------------TNTKRGVIFATYTALIGE 382 (1300)
T ss_pred ccccccchhhchhhcCCCCccceehhhccccccccccc------------------------CCccceeEEEeeHhhhhh
Confidence 5778888788888763 567787777665543222111 023568999999876544
Q ss_pred hcc------hhhhh---hhccCC-CEEEEeCCCcCCC-------cccHHHHHHHhc----ccCcEEEEecccCCCChhhH
Q 006698 220 VSG------DELSG---ILLDLP-GLFVFDEGHTPRN-------DDTCMFKALSRI----KTRRRIILSGTPFQNNFQEL 278 (635)
Q Consensus 220 ~~~------~~~~~---~~~~~~-~~vIvDEaH~~kn-------~~s~~~~~l~~l----~~~~~l~LTgTP~~n~~~el 278 (635)
... ..++. +....| .+||+||||+.|| ..++..+.+..| +..+++..|||- ..|=
T Consensus 383 s~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATG----AsEP 458 (1300)
T KOG1513|consen 383 SQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATG----ASEP 458 (1300)
T ss_pred ccccCchHHHHHHHHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccC----CCCc
Confidence 332 12222 233344 6899999999999 345666666554 777899999995 4444
Q ss_pred HHHHHhhhhhhhhhHHH---HHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceE
Q 006698 279 ENTLSLVRQEFGEVLRT---VRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRH 355 (635)
Q Consensus 279 ~~ll~~l~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~ 355 (635)
-+|..+.+-++++.-.. |..|...+.+..... -.+..+-..++...+-|. ..+....-
T Consensus 459 rNMaYM~RLGlWGegtaf~eF~eFi~AvEkRGvGA--------------MEIVAMDMK~rGmYiARQ-----LSFkgVsF 519 (1300)
T KOG1513|consen 459 RNMAYMVRLGLWGEGTAFPEFEEFIHAVEKRGVGA--------------MEIVAMDMKLRGMYIARQ-----LSFKGVSF 519 (1300)
T ss_pred chhhhhhhhccccCCCcCccHHHHHHHHHhcCCce--------------eeeeehhhhhhhhhhhhh-----ccccCceE
Confidence 55666666666655443 444443332221100 001111112222222111 12334455
Q ss_pred EEEEeCCcHHHHHHHHHH
Q 006698 356 SVVILQPDEFQKRLCKAV 373 (635)
Q Consensus 356 ~~v~~~~s~~q~~~y~~~ 373 (635)
.+..++|+++-+.+|+..
T Consensus 520 rieEv~ls~eF~k~Yn~a 537 (1300)
T KOG1513|consen 520 RIEEVPLSKEFRKVYNRA 537 (1300)
T ss_pred EEEecccCHHHHHHHHHH
Confidence 677889999998888763
No 132
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.31 E-value=1.5e-10 Score=128.05 Aligned_cols=149 Identities=15% Similarity=0.170 Sum_probs=101.5
Q ss_pred HHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccc
Q 006698 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSM 144 (635)
Q Consensus 66 l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l 144 (635)
+.-+|-|+|++++.-+-+ +.+++++.++|+|||+++-.++..-++.+ .++....| ++|
T Consensus 116 ~~F~LD~fQ~~a~~~Ler-------------------~esVlV~ApTssGKTvVaeyAi~~al~~~--qrviYTsPIKAL 174 (1041)
T COG4581 116 YPFELDPFQQEAIAILER-------------------GESVLVCAPTSSGKTVVAEYAIALALRDG--QRVIYTSPIKAL 174 (1041)
T ss_pred CCCCcCHHHHHHHHHHhC-------------------CCcEEEEccCCCCcchHHHHHHHHHHHcC--CceEeccchhhh
Confidence 456799999999977632 77999999999999999987775544443 35899999 888
Q ss_pred hHHHHHHHHHhcCCC-c-ccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcc
Q 006698 145 LLTWEEEFKKWGIDI-P-FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222 (635)
Q Consensus 145 ~~qW~~E~~~~~~~~-~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~ 222 (635)
..|=.+++..-+.+. . +-.+. |+ .+-+.+..++++|-+.++++...
T Consensus 175 sNQKyrdl~~~fgdv~~~vGL~T-----GD---------------------------v~IN~~A~clvMTTEILRnMlyr 222 (1041)
T COG4581 175 SNQKYRDLLAKFGDVADMVGLMT-----GD---------------------------VSINPDAPCLVMTTEILRNMLYR 222 (1041)
T ss_pred hhhHHHHHHHHhhhhhhhcccee-----cc---------------------------eeeCCCCceEEeeHHHHHHHhcc
Confidence 888777776433221 0 00111 11 11245778999999999987754
Q ss_pred hhhhhhhccCCCEEEEeCCCcCCCcc-cHHHHHHHhc--ccCcEEEEeccc
Q 006698 223 DELSGILLDLPGLFVFDEGHTPRNDD-TCMFKALSRI--KTRRRIILSGTP 270 (635)
Q Consensus 223 ~~~~~~~~~~~~~vIvDEaH~~kn~~-s~~~~~l~~l--~~~~~l~LTgTP 270 (635)
. .........||+||.|.+.... ...+..+.-+ +.-+.++||||-
T Consensus 223 g---~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv 270 (1041)
T COG4581 223 G---SESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATV 270 (1041)
T ss_pred C---cccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeCCC
Confidence 2 1222345789999999997642 3345444443 334789999994
No 133
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.29 E-value=3.5e-10 Score=120.63 Aligned_cols=145 Identities=15% Similarity=0.193 Sum_probs=96.7
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~ 146 (635)
-+|-++|++|+..+-+ +..+++|..+-+|||++|=.++..- + ....+++.-.| ++|-.
T Consensus 296 FelD~FQk~Ai~~ler-------------------g~SVFVAAHTSAGKTvVAEYAiala-q-~h~TR~iYTSPIKALSN 354 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLER-------------------GDSVFVAAHTSAGKTVVAEYAIALA-Q-KHMTRTIYTSPIKALSN 354 (1248)
T ss_pred CCccHHHHHHHHHHHc-------------------CCeEEEEecCCCCcchHHHHHHHHH-H-hhccceEecchhhhhcc
Confidence 4688999999987743 6789999999999999986554322 2 22457899999 66667
Q ss_pred HHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhh
Q 006698 147 TWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELS 226 (635)
Q Consensus 147 qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~ 226 (635)
|=.++|+.-+.+... +.| .- +..+...++|+|-+.+++++-..
T Consensus 355 QKfRDFk~tF~DvgL--lTG-----Dv---------------------------qinPeAsCLIMTTEILRsMLYrg--- 397 (1248)
T KOG0947|consen 355 QKFRDFKETFGDVGL--LTG-----DV---------------------------QINPEASCLIMTTEILRSMLYRG--- 397 (1248)
T ss_pred chHHHHHHhccccce--eec-----ce---------------------------eeCCCcceEeehHHHHHHHHhcc---
Confidence 777888865544331 111 11 12457789999999999876441
Q ss_pred hhhccCCCEEEEeCCCcCCCcc-cHHHHHHHhc--ccCcEEEEeccc
Q 006698 227 GILLDLPGLFVFDEGHTPRNDD-TCMFKALSRI--KTRRRIILSGTP 270 (635)
Q Consensus 227 ~~~~~~~~~vIvDEaH~~kn~~-s~~~~~l~~l--~~~~~l~LTgTP 270 (635)
.-+....+.||+||.|++.+.. .-.|.-+.-+ +--..++||||-
T Consensus 398 adliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATV 444 (1248)
T KOG0947|consen 398 ADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATV 444 (1248)
T ss_pred cchhhccceEEEeeeeecccccccccceeeeeeccccceEEEEeccC
Confidence 1111225789999999996632 2344444333 233469999993
No 134
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.24 E-value=1.7e-09 Score=117.21 Aligned_cols=368 Identities=15% Similarity=0.134 Sum_probs=198.0
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~ 146 (635)
..|-+-|..++..+.... + +....+|...+|+|||-.-+.++...+..+ +-+||++| .++..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~-~--------------~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G--kqvLvLVPEI~Ltp 259 (730)
T COG1198 197 LALNQEQQAAVEAILSSL-G--------------GFAPFLLDGVTGSGKTEVYLEAIAKVLAQG--KQVLVLVPEIALTP 259 (730)
T ss_pred cccCHHHHHHHHHHHHhc-c--------------cccceeEeCCCCCcHHHHHHHHHHHHHHcC--CEEEEEeccccchH
Confidence 468899999999987754 2 256789999999999988888888877765 46899999 88999
Q ss_pred HHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhh
Q 006698 147 TWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELS 226 (635)
Q Consensus 147 qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~ 226 (635)
|-.+.|+..+. .++.++|+.-..+.....+.... .....|||-|-+.+-.-
T Consensus 260 q~~~rf~~rFg-~~v~vlHS~Ls~~er~~~W~~~~---------------------~G~~~vVIGtRSAlF~P------- 310 (730)
T COG1198 260 QLLARFKARFG-AKVAVLHSGLSPGERYRVWRRAR---------------------RGEARVVIGTRSALFLP------- 310 (730)
T ss_pred HHHHHHHHHhC-CChhhhcccCChHHHHHHHHHHh---------------------cCCceEEEEechhhcCc-------
Confidence 98888886554 67777776544433333222111 13456777776553221
Q ss_pred hhhccCCCEEEEeCCCc--CCCcccHHHHH----H--HhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHh
Q 006698 227 GILLDLPGLFVFDEGHT--PRNDDTCMFKA----L--SRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK 298 (635)
Q Consensus 227 ~~~~~~~~~vIvDEaH~--~kn~~s~~~~~----l--~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~ 298 (635)
...-.+|||||=|. +|..+..++.+ + .....-.+++-|||| +++-+++. ....
T Consensus 311 ---f~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATP---SLES~~~~---~~g~---------- 371 (730)
T COG1198 311 ---FKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATP---SLESYANA---ESGK---------- 371 (730)
T ss_pred ---hhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCC---CHHHHHhh---hcCc----------
Confidence 12348999999996 45444333322 1 112444688999999 23322221 0000
Q ss_pred hhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeC-------CcH-HHHHHH
Q 006698 299 SGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQ-------PDE-FQKRLC 370 (635)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~-------~s~-~q~~~y 370 (635)
.....+..+.. ...+|......+.-+ +|+ ..+++.
T Consensus 372 -----------------------------------y~~~~L~~R~~--~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~ 414 (730)
T COG1198 372 -----------------------------------YKLLRLTNRAG--RARLPRVEIIDMRKEPLETGRSLSPALLEAIR 414 (730)
T ss_pred -----------------------------------eEEEEcccccc--ccCCCcceEEeccccccccCccCCHHHHHHHH
Confidence 00000000000 112222211111100 232 223333
Q ss_pred HHHhhhhhH---HHHH----HHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc--CCCeEEE
Q 006698 371 KAVEGVKSF---VELN----YCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS--TNEKVLV 441 (635)
Q Consensus 371 ~~~~~~~~~---~~~~----~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~--~~~kviI 441 (635)
+.+...... ++.. ..+..-|.+..-... ........... ..+.... .+.-. .+-..+ -|...|+
T Consensus 415 ~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~-Cd~~lt~H~~~-~~L~CH~--Cg~~~---~~p~~Cp~Cgs~~L~ 487 (730)
T COG1198 415 KTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPN-CDSPLTLHKAT-GQLRCHY--CGYQE---PIPQSCPECGSEHLR 487 (730)
T ss_pred HHHhcCCeEEEEEccCCccceeecccCCCcccCCC-CCcceEEecCC-CeeEeCC--CCCCC---CCCCCCCCCCCCeeE
Confidence 333221100 0000 001111111110000 00000000000 0000000 00000 000111 1223455
Q ss_pred EcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHH--HHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEe
Q 006698 442 FSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKK--RQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLL 519 (635)
Q Consensus 442 Fs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~--r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~ 519 (635)
++-. -.+.+++.|...|+ +.++.+++++++..+ -+.+++.|.+ |+..||| .|+..+.|.|+++...|.++
T Consensus 488 ~~G~--GterieeeL~~~FP---~~rv~r~d~Dtt~~k~~~~~~l~~~~~--ge~dILi-GTQmiaKG~~fp~vtLVgvl 559 (730)
T COG1198 488 AVGP--GTERIEEELKRLFP---GARIIRIDSDTTRRKGALEDLLDQFAN--GEADILI-GTQMIAKGHDFPNVTLVGVL 559 (730)
T ss_pred Eecc--cHHHHHHHHHHHCC---CCcEEEEccccccchhhHHHHHHHHhC--CCCCeee-cchhhhcCCCcccceEEEEE
Confidence 5433 34677888888874 899999999987544 4678999998 5566776 69999999999999988877
Q ss_pred CCCC------------ChhhHHhhhhhhhhcCCcceEEEEEEEeC
Q 006698 520 DVVW------------NPFVERQAISRAYRLGQKRVVHVYHLITS 552 (635)
Q Consensus 520 d~~w------------np~~~~Qa~gR~~R~GQ~~~V~vy~li~~ 552 (635)
|.+- ....+.|.-||++|-+-.-.|.|-.+...
T Consensus 560 ~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 560 DADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred echhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCC
Confidence 6542 12356899999999865556666555544
No 135
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.21 E-value=1.6e-09 Score=123.69 Aligned_cols=82 Identities=23% Similarity=0.359 Sum_probs=57.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCccccccccc--
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG-- 512 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~-- 512 (635)
.+.+++||..+...++.+...|...... .++. .+..+.. ..|.+++++|++ ++..||+ +|.+..||+|+++
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~-~~~~--~l~q~~~-~~r~~ll~~F~~--~~~~iLl-gt~sf~EGVD~~g~~ 745 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEF-EGYE--VLAQGIN-GSRAKIKKRFNN--GEKAILL-GTSSFWEGVDFPGNG 745 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccc-cCce--EEecCCC-ccHHHHHHHHHh--CCCeEEE-EcceeecccccCCCc
Confidence 4458999999999999999998752110 1333 3333332 578899999997 3345666 5899999999985
Q ss_pred CCeEEEeCCCC
Q 006698 513 ASRVVLLDVVW 523 (635)
Q Consensus 513 a~~vi~~d~~w 523 (635)
...||+.-+|+
T Consensus 746 l~~viI~~LPf 756 (850)
T TIGR01407 746 LVCLVIPRLPF 756 (850)
T ss_pred eEEEEEeCCCC
Confidence 44667766665
No 136
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.17 E-value=3.8e-09 Score=112.59 Aligned_cols=129 Identities=19% Similarity=0.183 Sum_probs=94.7
Q ss_pred cchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 006698 421 GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498 (635)
Q Consensus 421 s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll 498 (635)
..|..++.+-+... .|..|||.|.++...+.|...|.+. |++..+++.... ++-..+|.+=-. ..-+.
T Consensus 410 ~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~-----gI~h~vLNAk~~-~~EA~IIa~AG~----~gaVT 479 (764)
T PRK12326 410 AEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAA-----GVPAVVLNAKND-AEEARIIAEAGK----YGAVT 479 (764)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhC-----CCcceeeccCch-HhHHHHHHhcCC----CCcEE
Confidence 34677766655444 8999999999999999999999997 999999998754 333445554432 22255
Q ss_pred EccCCcccccccc---------------cCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHH
Q 006698 499 ASTKACCEGINLV---------------GASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQ 563 (635)
Q Consensus 499 ~st~~~~~GlnL~---------------~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~ 563 (635)
++|..+|.|.|+. +.=+||--+.+-|-..+.|..||++|+|..=....|- |+|..++.+-
T Consensus 480 IATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~l-----SleDdl~~~f 554 (764)
T PRK12326 480 VSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFV-----SLEDDVVAAN 554 (764)
T ss_pred EEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEE-----EcchhHHHhc
Confidence 5799999998876 3447888889999999999999999999875443322 3455555444
Q ss_pred H
Q 006698 564 A 564 (635)
Q Consensus 564 ~ 564 (635)
.
T Consensus 555 ~ 555 (764)
T PRK12326 555 L 555 (764)
T ss_pred C
Confidence 3
No 137
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.14 E-value=9.8e-09 Score=112.40 Aligned_cols=114 Identities=16% Similarity=0.152 Sum_probs=86.7
Q ss_pred cchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 006698 421 GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498 (635)
Q Consensus 421 s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll 498 (635)
..|..++.+-+... .|..|||-|.++...+.|...|.+. |++..+++.... ++-..+|..=-. .--+.
T Consensus 551 ~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~-----gi~h~vLNak~~-~~Ea~iia~AG~----~g~VT 620 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQN-----RIEHTVLNAKNH-AQEAEIIAGAGK----LGAVT 620 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHc-----CCcceecccchh-hhHHHHHHhcCC----CCcEE
Confidence 35666666555444 8899999999999999999999987 999999998743 222344444322 22255
Q ss_pred EccCCcccccccc--------cCCeEEEeCCCCChhhHHhhhhhhhhcCCcceE
Q 006698 499 ASTKACCEGINLV--------GASRVVLLDVVWNPFVERQAISRAYRLGQKRVV 544 (635)
Q Consensus 499 ~st~~~~~GlnL~--------~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V 544 (635)
++|..+|.|.|+. +.=+||.-..+-|...+.|..||++|+|..=..
T Consensus 621 IATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss 674 (970)
T PRK12899 621 VATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAA 674 (970)
T ss_pred EeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCce
Confidence 5799999998874 345788888999999999999999999986533
No 138
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.09 E-value=2.1e-10 Score=104.34 Aligned_cols=137 Identities=17% Similarity=0.174 Sum_probs=82.9
Q ss_pred ceEEeCCCCchHHHHH-HHHHHHHHHhCCCCCcEEEeC-ccchHHHHHHHHHh---cCCCcccccCCCCCcCcccchhhH
Q 006698 105 GCIISHAPGTGKTGLT-LVFLQAYMKLHPRCRPVIIAP-RSMLLTWEEEFKKW---GIDIPFYNLNKPELSGKENNGAVA 179 (635)
Q Consensus 105 g~iLad~~GlGKT~~a-i~~i~~~~~~~~~~~~LIv~P-~~l~~qW~~E~~~~---~~~~~v~~~~~~~~~~~~~~~~~~ 179 (635)
.++--.-.|+|||.+- ++.+..+-.......+|++|- ..|..|-..|+.+| .|++++.++-|...-.++.+..
T Consensus 81 dvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~l-- 158 (387)
T KOG0329|consen 81 DVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELL-- 158 (387)
T ss_pred hhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHH--
Confidence 4455556799999543 233322211122234589998 66778999987755 7888888776644333332221
Q ss_pred hHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhc-
Q 006698 180 LMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRI- 258 (635)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l- 258 (635)
.+-..|++.|+..+..++++.. +........|+|||.++... --..+-+..+
T Consensus 159 -----------------------k~~PhivVgTPGrilALvr~k~---l~lk~vkhFvlDEcdkmle~-lDMrRDvQEif 211 (387)
T KOG0329|consen 159 -----------------------KNCPHIVVGTPGRILALVRNRS---LNLKNVKHFVLDECDKMLEQ-LDMRRDVQEIF 211 (387)
T ss_pred -----------------------hCCCeEEEcCcHHHHHHHHhcc---CchhhcceeehhhHHHHHHH-HHHHHHHHHHh
Confidence 2356799999998887776532 33334577999999976432 1223333333
Q ss_pred ----ccCcEEEEeccc
Q 006698 259 ----KTRRRIILSGTP 270 (635)
Q Consensus 259 ----~~~~~l~LTgTP 270 (635)
..+.++..|||-
T Consensus 212 r~tp~~KQvmmfsatl 227 (387)
T KOG0329|consen 212 RMTPHEKQVMMFSATL 227 (387)
T ss_pred hcCcccceeeeeeeec
Confidence 445677888884
No 139
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.09 E-value=1.3e-09 Score=113.61 Aligned_cols=144 Identities=15% Similarity=0.211 Sum_probs=92.6
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLT 147 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~q 147 (635)
+|-|+|..++.-+ +.+..+++..-+.+|||++|=-+|+.-++. ..+++.-.| ++|-.|
T Consensus 129 ~LDpFQ~~aI~Ci-------------------dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--kQRVIYTSPIKALSNQ 187 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCI-------------------DRGESVLVSAHTSAGKTVVAEYAIAMSLRE--KQRVIYTSPIKALSNQ 187 (1041)
T ss_pred ccCchHhhhhhhh-------------------cCCceEEEEeecCCCcchHHHHHHHHHHHh--cCeEEeeChhhhhcch
Confidence 5889999998755 236689999999999999986554443333 347889999 667677
Q ss_pred HHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhh
Q 006698 148 WEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG 227 (635)
Q Consensus 148 W~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~ 227 (635)
=.+|+..-+.++ -.+.|.. ...++...+|+|.+.++...-.. .
T Consensus 188 KYREl~~EF~DV--GLMTGDV--------------------------------TInP~ASCLVMTTEILRsMLYRG---S 230 (1041)
T KOG0948|consen 188 KYRELLEEFKDV--GLMTGDV--------------------------------TINPDASCLVMTTEILRSMLYRG---S 230 (1041)
T ss_pred hHHHHHHHhccc--ceeecce--------------------------------eeCCCCceeeeHHHHHHHHHhcc---c
Confidence 777776433221 1111110 11357789999999999876431 1
Q ss_pred hhccCCCEEEEeCCCcCCCccc-HHHHH-HHhc-ccCcEEEEeccc
Q 006698 228 ILLDLPGLFVFDEGHTPRNDDT-CMFKA-LSRI-KTRRRIILSGTP 270 (635)
Q Consensus 228 ~~~~~~~~vIvDEaH~~kn~~s-~~~~~-l~~l-~~~~~l~LTgTP 270 (635)
-.......||+||.|+++...- -.|.- +.-+ +.-+-++||||-
T Consensus 231 EvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 231 EVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATI 276 (1041)
T ss_pred hHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEeccC
Confidence 1122346799999999987421 12211 1222 455678999994
No 140
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.09 E-value=1.7e-08 Score=115.20 Aligned_cols=145 Identities=23% Similarity=0.297 Sum_probs=93.0
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHHHHHHHHHhcCCCcccccCCCCCcCcccchhhH
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVA 179 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 179 (635)
..++||++-|-.|+|||++++-++..+.+......++|||- .-|-.|-.++|..+........ ...+... ...
T Consensus 271 ~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~---Lk~ 344 (962)
T COG0610 271 GDGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSE---LKE 344 (962)
T ss_pred CcCCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHH---HHH
Confidence 45789999999999999999988877766644444577777 6677999999998864332211 0111111 111
Q ss_pred hHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHh-c
Q 006698 180 LMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSR-I 258 (635)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~-l 258 (635)
.+.. ....|++||-+.|.......... ......-+||+||||+--. ....+.+.. +
T Consensus 345 ~l~~--------------------~~~~ii~TTIQKf~~~~~~~~~~-~~~~~~ivvI~DEaHRSQ~--G~~~~~~~~~~ 401 (962)
T COG0610 345 LLED--------------------GKGKIIVTTIQKFNKAVKEDELE-LLKRKNVVVIIDEAHRSQY--GELAKLLKKAL 401 (962)
T ss_pred HHhc--------------------CCCcEEEEEecccchhhhccccc-ccCCCcEEEEEechhhccc--cHHHHHHHHHh
Confidence 1111 14579999999998776443111 1334456899999998532 233344333 3
Q ss_pred ccCcEEEEecccCCCC
Q 006698 259 KTRRRIILSGTPFQNN 274 (635)
Q Consensus 259 ~~~~~l~LTgTP~~n~ 274 (635)
+...-++.||||+...
T Consensus 402 ~~a~~~gFTGTPi~~~ 417 (962)
T COG0610 402 KKAIFIGFTGTPIFKE 417 (962)
T ss_pred ccceEEEeeCCccccc
Confidence 5577899999997543
No 141
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.06 E-value=1.5e-08 Score=109.13 Aligned_cols=70 Identities=21% Similarity=0.300 Sum_probs=53.4
Q ss_pred eEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCC-----CChhhHHhhhhhhhhcCC
Q 006698 467 EVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVV-----WNPFVERQAISRAYRLGQ 540 (635)
Q Consensus 467 ~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~-----wnp~~~~Qa~gR~~R~GQ 540 (635)
.+.+.+.+.+.++|..+-..|++ |..+|+. +|...+-|+||+ |.+||+=-|. -.-..|.|.+||++|.|=
T Consensus 524 GvAyHhaGLT~eER~~iE~afr~--g~i~vl~-aTSTlaaGVNLP-ArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 524 GVAYHHAGLTSEEREIIEAAFRE--GNIFVLV-ATSTLAAGVNLP-ARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred cceecccccccchHHHHHHHHHh--cCeEEEE-ecchhhccCcCC-cceeEEeCCccccchhhhhhHHhhhhhhhhccc
Confidence 34567778888999888889998 5577766 577799999999 5566554333 245579999999999984
No 142
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.06 E-value=7.3e-09 Score=113.24 Aligned_cols=115 Identities=18% Similarity=0.171 Sum_probs=88.6
Q ss_pred cchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 006698 421 GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498 (635)
Q Consensus 421 s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll 498 (635)
..|..++.+-+... .|..|||-|.++...+.|.+.|... |++..+++.... ++-..+|.+=-. .--+.
T Consensus 432 ~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~-----gi~h~VLNAk~~-~~EA~IIa~AG~----~GaVT 501 (913)
T PRK13103 432 EEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKE-----GIEHKVLNAKYH-EKEAEIIAQAGR----PGALT 501 (913)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHc-----CCcHHHhccccc-hhHHHHHHcCCC----CCcEE
Confidence 45777777766655 8999999999999999999999998 999988888744 333344553322 22245
Q ss_pred EccCCcccccccc-------------------------------------cCCeEEEeCCCCChhhHHhhhhhhhhcCCc
Q 006698 499 ASTKACCEGINLV-------------------------------------GASRVVLLDVVWNPFVERQAISRAYRLGQK 541 (635)
Q Consensus 499 ~st~~~~~GlnL~-------------------------------------~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~ 541 (635)
++|..+|.|-|+. +.=+||--+.+-|--.+.|..||++|+|..
T Consensus 502 IATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDP 581 (913)
T PRK13103 502 IATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDP 581 (913)
T ss_pred EeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCC
Confidence 5799999999874 344788888999999999999999999987
Q ss_pred ceEE
Q 006698 542 RVVH 545 (635)
Q Consensus 542 ~~V~ 545 (635)
=...
T Consensus 582 GsS~ 585 (913)
T PRK13103 582 GSSR 585 (913)
T ss_pred CceE
Confidence 5433
No 143
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.04 E-value=1.2e-07 Score=106.28 Aligned_cols=72 Identities=28% Similarity=0.422 Sum_probs=56.8
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCC-CcEEEeC-ccchH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRC-RPVIIAP-RSMLL 146 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~-~~LIv~P-~~l~~ 146 (635)
.+||.|++....+++.+.. ++.+++-.++|+|||+.+|+.+.++....+.. ++++.+. .+-+.
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~---------------~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~ 74 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDR---------------GDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLE 74 (705)
T ss_pred CCCHHHHHHHHHHHHHhcc---------------CCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHH
Confidence 3699999999999988754 67899999999999999998887776644433 3444455 56778
Q ss_pred HHHHHHHHh
Q 006698 147 TWEEEFKKW 155 (635)
Q Consensus 147 qW~~E~~~~ 155 (635)
|-.+|+++.
T Consensus 75 q~i~Elk~~ 83 (705)
T TIGR00604 75 QATEELRKL 83 (705)
T ss_pred HHHHHHHhh
Confidence 999999983
No 144
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=99.00 E-value=1.5e-08 Score=112.29 Aligned_cols=79 Identities=16% Similarity=0.107 Sum_probs=47.9
Q ss_pred cCCCeEEeeHHHHHHhhcchhhhhhhccCCCEEEEeCCCcCCCcccHHHH--HHHhc-ccCcEEEEecccCCC--ChhhH
Q 006698 204 MGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFK--ALSRI-KTRRRIILSGTPFQN--NFQEL 278 (635)
Q Consensus 204 ~~~~vvi~ty~~~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~--~l~~l-~~~~~l~LTgTP~~n--~~~el 278 (635)
...+|+++|...+..++-. ..+....+..|||||||++.+..+-.+- ..+.- +...+.++|+.|-.- .+.-+
T Consensus 6 ~~ggi~~~T~rIl~~DlL~---~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l 82 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLT---GIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPL 82 (814)
T ss_pred hcCCEEEEechhhHhHHhc---CCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcccccchHHH
Confidence 3567888888877765422 1233344689999999999765443222 22221 566799999999652 33444
Q ss_pred HHHHHhh
Q 006698 279 ENTLSLV 285 (635)
Q Consensus 279 ~~ll~~l 285 (635)
-.++.-|
T Consensus 83 ~~vmk~L 89 (814)
T TIGR00596 83 ETKMRNL 89 (814)
T ss_pred HHHHHHh
Confidence 4444433
No 145
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.98 E-value=5.9e-08 Score=104.28 Aligned_cols=154 Identities=16% Similarity=0.215 Sum_probs=105.4
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHHHHHHHHH-h-cCCCcccccCCCCCcCcccchhh
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLTWEEEFKK-W-GIDIPFYNLNKPELSGKENNGAV 178 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qW~~E~~~-~-~~~~~v~~~~~~~~~~~~~~~~~ 178 (635)
.+..++|..++-+|||+..--++...++....+-++.|+| ++++.|-..++.. | .+.++ .+....|.
T Consensus 525 r~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~----rg~sl~g~------ 594 (1330)
T KOG0949|consen 525 RNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFL----RGVSLLGD------ 594 (1330)
T ss_pred cccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccc----cchhhHhh------
Confidence 3668999999999999999999988888887777899999 8888888877653 3 11111 11111111
Q ss_pred HhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhhhhccCCCEEEEeCCCcCCCc-ccHHHHHHHh
Q 006698 179 ALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND-DTCMFKALSR 257 (635)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~-~s~~~~~l~~ 257 (635)
..+.+ .+.+| ++.|+||-++.++..+.........-....+||+||.|.+.|. .+..+..+-.
T Consensus 595 -ltqEY-------------sinp~--nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~ 658 (1330)
T KOG0949|consen 595 -LTQEY-------------SINPW--NCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLL 658 (1330)
T ss_pred -hhHHh-------------cCCch--hceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHH
Confidence 11111 11122 6789999999998877553223333345689999999999885 4667777777
Q ss_pred cccCcEEEEecccCCCChhhHHHHHH
Q 006698 258 IKTRRRIILSGTPFQNNFQELENTLS 283 (635)
Q Consensus 258 l~~~~~l~LTgTP~~n~~~el~~ll~ 283 (635)
+-.-..++|||| .+++..+.-.++
T Consensus 659 li~CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 659 LIPCPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred hcCCCeeEEecc--cCCHHHHHHHHH
Confidence 766678999999 466666655554
No 146
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.91 E-value=1.5e-07 Score=102.23 Aligned_cols=114 Identities=16% Similarity=0.119 Sum_probs=88.0
Q ss_pred cchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHH-HHHHHhcCCCCCcEEE
Q 006698 421 GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQ-SSINVLNDPSSQARIM 497 (635)
Q Consensus 421 s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~-~~i~~F~~~~~~~~vl 497 (635)
..|..++.+-+... .|..|||.|.++...+.|.+.|.+. |++..+++.... +++ .+|. +. |..--+
T Consensus 409 ~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~-----gi~h~vLNAk~~--e~EA~IIa--~A--G~~GaV 477 (925)
T PRK12903 409 HAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEA-----NIPHTVLNAKQN--AREAEIIA--KA--GQKGAI 477 (925)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC-----CCCceeecccch--hhHHHHHH--hC--CCCCeE
Confidence 45777777666554 8999999999999999999999997 999999998743 333 3443 22 222234
Q ss_pred EEccCCcccccccccC--------CeEEEeCCCCChhhHHhhhhhhhhcCCcceEE
Q 006698 498 LASTKACCEGINLVGA--------SRVVLLDVVWNPFVERQAISRAYRLGQKRVVH 545 (635)
Q Consensus 498 l~st~~~~~GlnL~~a--------~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~ 545 (635)
.++|..+|.|.|+.-. =+||.-+.+-|-..+.|..||++|+|..=...
T Consensus 478 TIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~ 533 (925)
T PRK12903 478 TIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESR 533 (925)
T ss_pred EEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcce
Confidence 5579999999998632 38888999999999999999999999765433
No 147
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.88 E-value=2.7e-07 Score=101.98 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=82.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHh-hhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccC
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRH-RFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~-~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a 513 (635)
...-++||-.-....+...+.|.+ .++ ....+.-++|..+.++..+ -|+...++.+-+|++|..+.++|++.+.
T Consensus 258 ~~GdILvFLpG~~EI~~~~~~L~~~~l~--~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIAETSLTI~gI 332 (845)
T COG1643 258 GSGSILVFLPGQREIERTAEWLEKAELG--DDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIAETSLTIPGI 332 (845)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHhcccc--CCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccccccceeeCCe
Confidence 455699999988888888888887 321 2588899999999988766 5665444434244489999999999988
Q ss_pred CeEEE--------eCCCC----------ChhhHHhhhhhhhhcCCcceEEEEEEEeCCChH
Q 006698 514 SRVVL--------LDVVW----------NPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556 (635)
Q Consensus 514 ~~vi~--------~d~~w----------np~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiE 556 (635)
..||= ||+-- +-+...||-||++| +.+-..|||++++..+
T Consensus 333 r~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR---~~pGicyRLyse~~~~ 390 (845)
T COG1643 333 RYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGR---TGPGICYRLYSEEDFL 390 (845)
T ss_pred EEEecCCcccccccccccCceeeeEEEechhhhhhhcccccc---CCCceEEEecCHHHHH
Confidence 87762 22221 22345677787777 5588899999976555
No 148
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.87 E-value=2.1e-07 Score=97.03 Aligned_cols=119 Identities=23% Similarity=0.263 Sum_probs=80.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccC-C--ceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccc
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWRE-G--QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLV 511 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~-g--~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~ 511 (635)
+..-++||=.-.+..+...+.|.+..+... + .-+.-+.|+++.+++. .-|.....+.+-+|++|..+...|++.
T Consensus 257 ~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~---rvF~p~p~g~RKvIlsTNIAETSlTI~ 333 (674)
T KOG0922|consen 257 PPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQS---RVFDPAPPGKRKVILSTNIAETSLTID 333 (674)
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhh---ccccCCCCCcceEEEEcceeeeeEEec
Confidence 444799999998888888888877633211 1 1356789999988764 446654444555566899999999998
Q ss_pred cCCeEEEe----CCCCCh-----------hhHHhhhhhhhhcCCcceEEEEEEEeCCChH
Q 006698 512 GASRVVLL----DVVWNP-----------FVERQAISRAYRLGQKRVVHVYHLITSETLE 556 (635)
Q Consensus 512 ~a~~vi~~----d~~wnp-----------~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiE 556 (635)
+...||=- ...||| ..-.||.-|++|-|.+.+..+|||+++.-+|
T Consensus 334 GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 334 GIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYD 393 (674)
T ss_pred ceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHh
Confidence 87766410 112344 2344666666666667799999999987664
No 149
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.87 E-value=6e-07 Score=97.74 Aligned_cols=87 Identities=14% Similarity=0.239 Sum_probs=68.5
Q ss_pred hHHHHHHHHHhcCCCeEEEEcCC---hhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEE
Q 006698 423 KTRFLLILLELSTNEKVLVFSQY---IEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499 (635)
Q Consensus 423 K~~~l~~~l~~~~~~kviIFs~~---~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~ 499 (635)
-...+.++++.. |.-.|||.+- ...++.|.++|+.+ |+++..++.. +.+.++.|.. |++.|++.
T Consensus 323 ~~e~~~elvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~-----Gi~a~~~~a~-----~~~~le~F~~--GeidvLVG 389 (1187)
T COG1110 323 SLEKVVELVKKL-GDGGLIFVPIDYGREKAEELAEYLRSH-----GINAELIHAE-----KEEALEDFEE--GEVDVLVG 389 (1187)
T ss_pred cHHHHHHHHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhc-----CceEEEeecc-----chhhhhhhcc--CceeEEEE
Confidence 344455666654 3468999998 88899999999998 9999888774 2578999998 77888885
Q ss_pred c---cCCcccccccc-cCCeEEEeCCC
Q 006698 500 S---TKACCEGINLV-GASRVVLLDVV 522 (635)
Q Consensus 500 s---t~~~~~GlnL~-~a~~vi~~d~~ 522 (635)
. ..+.-.||||+ ....+||+..|
T Consensus 390 vAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 390 VASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred ecccccceeecCCchhheeEEEEecCC
Confidence 3 34567899998 78899999988
No 150
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.86 E-value=1.2e-07 Score=96.29 Aligned_cols=109 Identities=21% Similarity=0.316 Sum_probs=87.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCC
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGAS 514 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~ 514 (635)
+|+-|+-||... .-.+...++++ .+..+++|.|+.+++.|.+--..||++++++.|+++ ++|.|.||||. .+
T Consensus 357 ~GDCvV~FSkk~--I~~~k~kIE~~----g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVA-sDAIGMGLNL~-Ir 428 (700)
T KOG0953|consen 357 PGDCVVAFSKKD--IFTVKKKIEKA----GNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVA-SDAIGMGLNLN-IR 428 (700)
T ss_pred CCCeEEEeehhh--HHHHHHHHHHh----cCcceEEEecCCCCchhHHHHHHhCCCCCccceEEe-ecccccccccc-ee
Confidence 889999998753 23355666666 244599999999999999999999998899999985 99999999997 78
Q ss_pred eEEEeCCC---------CChhhHHhhhhhhhhcCCcc-eEEEEEEEe
Q 006698 515 RVVLLDVV---------WNPFVERQAISRAYRLGQKR-VVHVYHLIT 551 (635)
Q Consensus 515 ~vi~~d~~---------wnp~~~~Qa~gR~~R~GQ~~-~V~vy~li~ 551 (635)
+|||++.. -..+...|--||++|.|..- .-.|..|-.
T Consensus 429 RiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~ 475 (700)
T KOG0953|consen 429 RIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS 475 (700)
T ss_pred EEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH
Confidence 99999865 34567789999999998765 555555544
No 151
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.83 E-value=3.7e-06 Score=90.84 Aligned_cols=95 Identities=6% Similarity=0.105 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCC--CCCcEEEEEcc
Q 006698 424 TRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDP--SSQARIMLAST 501 (635)
Q Consensus 424 ~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~--~~~~~vll~st 501 (635)
.+.+..++....|.-.+.||.+.. +..+.+.|.... .+ .+.+.|.. ..+..++++|+.. .+.-.||+ .|
T Consensus 459 ~~~~~~~~~~~~G~~lvLfTS~~~-~~~~~~~l~~~l----~~-~~l~qg~~--~~~~~l~~~f~~~~~~~~~~vL~-gt 529 (636)
T TIGR03117 459 SLSTAAILRKAQGGTLVLTTAFSH-ISAIGQLVELGI----PA-EIVIQSEK--NRLASAEQQFLALYANGIQPVLI-AA 529 (636)
T ss_pred HHHHHHHHHHcCCCEEEEechHHH-HHHHHHHHHhhc----CC-CEEEeCCC--ccHHHHHHHHHHhhcCCCCcEEE-eC
Confidence 345566666667877788887754 455666776542 22 24555643 2567799999863 12234555 69
Q ss_pred CCccccccc--------c--cCCeEEEeCCCCChhh
Q 006698 502 KACCEGINL--------V--GASRVVLLDVVWNPFV 527 (635)
Q Consensus 502 ~~~~~GlnL--------~--~a~~vi~~d~~wnp~~ 527 (635)
.+..+|+|+ + .++.||+.-+|+-|..
T Consensus 530 ~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~d 565 (636)
T TIGR03117 530 GGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNR 565 (636)
T ss_pred CccccccccCCccCCCCCCCcccEEEEEeCCCCcCC
Confidence 999999999 2 6889999988887743
No 152
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.83 E-value=2.8e-08 Score=84.46 Aligned_cols=129 Identities=19% Similarity=0.267 Sum_probs=70.3
Q ss_pred CCceEEeCCCCchHHHHHHH-HHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhH
Q 006698 103 GNGCIISHAPGTGKTGLTLV-FLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~-~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 181 (635)
+.--+|-.-+|+|||...+- ++.+..+ ...++||++|.-.+. +|+.+...+.++..-...... .
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~--~~~rvLvL~PTRvva---~em~~aL~~~~~~~~t~~~~~-~--------- 68 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK--RRLRVLVLAPTRVVA---EEMYEALKGLPVRFHTNARMR-T--------- 68 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH--TT--EEEEESSHHHH---HHHHHHTTTSSEEEESTTSS------------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH--ccCeEEEecccHHHH---HHHHHHHhcCCcccCceeeec-c---------
Confidence 44568888899999987664 3333333 356899999976664 455555444443332211100 0
Q ss_pred hhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhhhhccCCCEEEEeCCCcCCCcccHHHHH-HHhc-c
Q 006698 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKA-LSRI-K 259 (635)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~-l~~l-~ 259 (635)
-....-|-+++|.+|...... ......|++||+||||-. .+.|-.... +..+ .
T Consensus 69 --------------------~~g~~~i~vMc~at~~~~~~~----p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~ 123 (148)
T PF07652_consen 69 --------------------HFGSSIIDVMCHATYGHFLLN----PCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAE 123 (148)
T ss_dssp ----------------------SSSSEEEEEHHHHHHHHHT----SSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHH
T ss_pred --------------------ccCCCcccccccHHHHHHhcC----cccccCccEEEEeccccC-CHHHHhhheeHHHhhh
Confidence 012445778999998875533 122346999999999974 333333332 2222 2
Q ss_pred c--CcEEEEecccC
Q 006698 260 T--RRRIILSGTPF 271 (635)
Q Consensus 260 ~--~~~l~LTgTP~ 271 (635)
. ..+++|||||-
T Consensus 124 ~g~~~~i~mTATPP 137 (148)
T PF07652_consen 124 SGEAKVIFMTATPP 137 (148)
T ss_dssp TTS-EEEEEESS-T
T ss_pred ccCeeEEEEeCCCC
Confidence 2 36899999993
No 153
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.82 E-value=1.1e-06 Score=95.00 Aligned_cols=111 Identities=15% Similarity=0.227 Sum_probs=78.9
Q ss_pred hHHHHHHHHHhc-CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEcc
Q 006698 423 KTRFLLILLELS-TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAST 501 (635)
Q Consensus 423 K~~~l~~~l~~~-~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st 501 (635)
...+...++... .|+++-|||......+++++..... +..+..++|..+..+ ++.+. +.+|++ -|
T Consensus 268 ~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~-----~~~Vl~l~s~~~~~d----v~~W~----~~~Vvi-YT 333 (824)
T PF02399_consen 268 ETTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARF-----TKKVLVLNSTDKLED----VESWK----KYDVVI-YT 333 (824)
T ss_pred hhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhc-----CCeEEEEcCCCCccc----ccccc----ceeEEE-Ee
Confidence 334555555544 8999999999999999999888876 888999988766552 33443 467777 58
Q ss_pred CCcccccccc--cCCeEEEe--CCCCChh--hHHhhhhhhhhcCCcceEEEEE
Q 006698 502 KACCEGINLV--GASRVVLL--DVVWNPF--VERQAISRAYRLGQKRVVHVYH 548 (635)
Q Consensus 502 ~~~~~GlnL~--~a~~vi~~--d~~wnp~--~~~Qa~gR~~R~GQ~~~V~vy~ 548 (635)
.+.++|+++- ..+.|+.| .....|. ...|.+||+..++. ++++||.
T Consensus 334 ~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~~ 385 (824)
T PF02399_consen 334 PVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVYI 385 (824)
T ss_pred ceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEEE
Confidence 8889999986 46666665 3333344 36899999988874 4555554
No 154
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.80 E-value=6.3e-08 Score=107.36 Aligned_cols=204 Identities=17% Similarity=0.172 Sum_probs=116.5
Q ss_pred cHHHHHHHHHHHHhhhCCcccccccc--------------------cCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh
Q 006698 71 FPHQREGFEFIWKNIAGGIDLDELKN--------------------STSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL 130 (635)
Q Consensus 71 ~p~Q~~~v~~l~~~~~~~~~~~~~~~--------------------~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~ 130 (635)
.|||.+||..+...+.+ +....-.. +.......++.+.+++|+|||.+++..+.++.+.
T Consensus 8 l~hQ~~av~ai~~~F~~-~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~M~TGtGKT~~~~~~i~~l~~~ 86 (986)
T PRK15483 8 LPHQEQALAAILAAFTG-IDIASADPNHYANPLIKLRYENGIPGRSRTRIDDKANIDIKMETGTGKTYVYTRLMYELHQK 86 (986)
T ss_pred ChhHHHHHHHHHHHhcC-CCccCCccccccCcccccchhhccccccccccCccceEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 69999999998776553 22211100 0011234689999999999999999999999888
Q ss_pred CCCCCcEEEeC-ccchHHHHHHHH-----Hh----cCC--CcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeee
Q 006698 131 HPRCRPVIIAP-RSMLLTWEEEFK-----KW----GID--IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVK 198 (635)
Q Consensus 131 ~~~~~~LIv~P-~~l~~qW~~E~~-----~~----~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (635)
.+..++||||| .++......-+. .+ +.+ +.+.++++..-..+.+......+........
T Consensus 87 ~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~gr~~~~~~i~~Fa~~~~--------- 157 (986)
T PRK15483 87 YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKSGRKNFPAQLSNFVKASR--------- 157 (986)
T ss_pred cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccccccccChHHHHHHHhccc---------
Confidence 88889999999 455544443322 12 221 2333333322110111111111111110000
Q ss_pred eeccccCCCeEEeeHHHHHHhhc-chhhhhh-----------hccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEE
Q 006698 199 LYSWKMGTGILGLSYRLFEKLVS-GDELSGI-----------LLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIIL 266 (635)
Q Consensus 199 ~~~~~~~~~vvi~ty~~~~~~~~-~~~~~~~-----------~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~L 266 (635)
.-...-.|+++|.+.|.+... ......+ +...--+||+||+|++... .+.++++..+....++..
T Consensus 158 --~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~-~k~~~~i~~lnpl~~lry 234 (986)
T PRK15483 158 --QNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD-NKFYQAIEALKPQMIIRF 234 (986)
T ss_pred --cCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc-hHHHHHHHhcCcccEEEE
Confidence 001134688888888866321 1000111 1112257999999999652 447788999998899999
Q ss_pred ecccCC-------C--ChhhHHHHHHhhhh
Q 006698 267 SGTPFQ-------N--NFQELENTLSLVRQ 287 (635)
Q Consensus 267 TgTP~~-------n--~~~el~~ll~~l~p 287 (635)
|||--. | .-.|.++++.-|+|
T Consensus 235 sAT~~~~~~~~g~~~~~~~d~~NlvY~Lda 264 (986)
T PRK15483 235 GATFPDITEGKGKNKCTRKDYYNLQFDLNA 264 (986)
T ss_pred eeecCCccccccccccccccccCceeecCH
Confidence 999632 1 12246777776654
No 155
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.74 E-value=2e-07 Score=91.59 Aligned_cols=201 Identities=17% Similarity=0.135 Sum_probs=113.1
Q ss_pred eEEEEEeCCcHHHHHHHHHHhhh---------------------------hhHHHHHHHHhhhcCCCCCCCccccccCcc
Q 006698 354 RHSVVILQPDEFQKRLCKAVEGV---------------------------KSFVELNYCVSLLSVHPSLLPQQFFESFDV 406 (635)
Q Consensus 354 ~~~~v~~~~s~~q~~~y~~~~~~---------------------------~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~ 406 (635)
.++.++++|+..|+++|+.+... .....+...++.+|+||.|+........-.
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ll 83 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQLL 83 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccccc
Confidence 36778999999999999987541 122234556778999999976654321111
Q ss_pred chHHHhhcccCccccchHHHHHHHHHhc-------CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHH
Q 006698 407 DSAKLARLKLDPEAGIKTRFLLILLELS-------TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKK 479 (635)
Q Consensus 407 ~~~~l~~~~~~~~~s~K~~~l~~~l~~~-------~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~ 479 (635)
.....+. ....|+|..+|..++... .+-+++|.++...++++|+.+|... ++.+.+++|..-..+
T Consensus 84 ~~e~~~~---~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk-----~~~~kr~sg~~l~~~ 155 (297)
T PF11496_consen 84 LSEPAEW---LAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGK-----KLNYKRYSGESLYDE 155 (297)
T ss_dssp STTHHHH---HHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTS-----SSEEEESSS--S--S
T ss_pred cchHHHH---HHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccC-----CeeEEecCCCCCcCc
Confidence 1111111 134699999998888755 4568999999999999999999876 899999999765443
Q ss_pred HHHHH------------HHh-cCCCCCcEEEEEccCCccc----ccccccCCeEEEeCCCCChhhHHhhhhhh-hhcCCc
Q 006698 480 RQSSI------------NVL-NDPSSQARIMLASTKACCE----GINLVGASRVVLLDVVWNPFVERQAISRA-YRLGQK 541 (635)
Q Consensus 480 r~~~i------------~~F-~~~~~~~~vll~st~~~~~----GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~-~R~GQ~ 541 (635)
....- ... ..+...+.|.|++++-... .++-...+.||-||+.+++....-..-|. +|-+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-- 233 (297)
T PF11496_consen 156 KHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-- 233 (297)
T ss_dssp ---S----------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------
T ss_pred cccCCcccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC--
Confidence 33222 011 1122356777876654433 13334778999999999988754433343 3333
Q ss_pred ceEEEEEEEeCCChHHHHHHHHH
Q 006698 542 RVVHVYHLITSETLEWDKLRRQA 564 (635)
Q Consensus 542 ~~V~vy~li~~~tiEe~i~~~~~ 564 (635)
+.+-|++|+..+|+|..++..-.
T Consensus 234 ~~~PiirLv~~nSiEHi~L~~~~ 256 (297)
T PF11496_consen 234 RLCPIIRLVPSNSIEHIELCFPK 256 (297)
T ss_dssp -S--EEEEEETTSHHHHHHHHTT
T ss_pred CCCcEEEEeeCCCHHHHHHHccC
Confidence 78999999999999987776544
No 156
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.72 E-value=1.8e-06 Score=96.75 Aligned_cols=107 Identities=22% Similarity=0.339 Sum_probs=73.3
Q ss_pred HHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCc-eEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCC
Q 006698 425 RFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQ-EVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKA 503 (635)
Q Consensus 425 ~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~-~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~ 503 (635)
..+.+++...++ +++||..+-..+..+.+.+... .. -.....|.. .+..+++.|.....+ .+++.+..
T Consensus 469 ~~i~~~~~~~~~-~~lvlF~Sy~~l~~~~~~~~~~-----~~~~~v~~q~~~---~~~~~l~~f~~~~~~--~~lv~~gs 537 (654)
T COG1199 469 AYLREILKASPG-GVLVLFPSYEYLKRVAERLKDE-----RSTLPVLTQGED---EREELLEKFKASGEG--LILVGGGS 537 (654)
T ss_pred HHHHHHHhhcCC-CEEEEeccHHHHHHHHHHHhhc-----CccceeeecCCC---cHHHHHHHHHHhcCC--eEEEeecc
Confidence 334445554455 7888877778888888888864 22 234445543 455889999874332 45557999
Q ss_pred cccccccc--cCCeEEEeCCCCC-hh-----------------------------hHHhhhhhhhhcCCcc
Q 006698 504 CCEGINLV--GASRVVLLDVVWN-PF-----------------------------VERQAISRAYRLGQKR 542 (635)
Q Consensus 504 ~~~GlnL~--~a~~vi~~d~~wn-p~-----------------------------~~~Qa~gR~~R~GQ~~ 542 (635)
.+||+|++ .+..||+.-.|+- |. ...|++||+.|--+.+
T Consensus 538 f~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~ 608 (654)
T COG1199 538 FWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDR 608 (654)
T ss_pred ccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCc
Confidence 99999998 5688888877773 22 3469999999954444
No 157
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.71 E-value=3.1e-06 Score=93.41 Aligned_cols=128 Identities=20% Similarity=0.220 Sum_probs=90.3
Q ss_pred hHHHHHHHHHhc----CCCeEEEEcCChhHHHHHHHHHHhhhcccC--CceEEEEeCCCCHHHHHHHHHHhcCCCCCcEE
Q 006698 423 KTRFLLILLELS----TNEKVLVFSQYIEPLTLIMEQLRHRFNWRE--GQEVLYMDGKQDVKKRQSSINVLNDPSSQARI 496 (635)
Q Consensus 423 K~~~l~~~l~~~----~~~kviIFs~~~~~~~~l~~~L~~~~~~~~--g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~v 496 (635)
....+.+++... ....+|||-.-...+..+.+.|..+....+ ..-+..+|+.++..+++.+ |+.+..+++-
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RK 472 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRK 472 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcch
Confidence 344444444433 456899999999998888888876533322 3667788999998776654 6655555566
Q ss_pred EEEccCCcccccccccCCeEE--------EeCCCCC----------hhhHHhhhhhhhhcCCcceEEEEEEEeCCChH
Q 006698 497 MLASTKACCEGINLVGASRVV--------LLDVVWN----------PFVERQAISRAYRLGQKRVVHVYHLITSETLE 556 (635)
Q Consensus 497 ll~st~~~~~GlnL~~a~~vi--------~~d~~wn----------p~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiE 556 (635)
+|++|..+...|++.++-.|| .||+.-+ -+.-.||.||++| .++-.+|+|++..-.+
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRSRYE 547 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechhhhh
Confidence 666899999999998776664 4555433 3456788888887 5788899999876554
No 158
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.68 E-value=3.4e-06 Score=93.27 Aligned_cols=113 Identities=18% Similarity=0.141 Sum_probs=87.7
Q ss_pred cchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 006698 421 GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498 (635)
Q Consensus 421 s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll 498 (635)
..|..++.+-+... .|..|||-|.++...+.|.++|... |++..+++.... ++-.++|.+=-. .| . +-
T Consensus 611 ~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~-----gI~H~VLNAK~h-~~EAeIVA~AG~-~G--a-VT 680 (1112)
T PRK12901 611 REKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMR-----KIPHNVLNAKLH-QKEAEIVAEAGQ-PG--T-VT 680 (1112)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHc-----CCcHHHhhccch-hhHHHHHHhcCC-CC--c-EE
Confidence 35677776655554 9999999999999999999999997 999999888743 222344444322 12 2 44
Q ss_pred EccCCcccccccc--------cCCeEEEeCCCCChhhHHhhhhhhhhcCCcce
Q 006698 499 ASTKACCEGINLV--------GASRVVLLDVVWNPFVERQAISRAYRLGQKRV 543 (635)
Q Consensus 499 ~st~~~~~GlnL~--------~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~ 543 (635)
++|..+|.|-|+. +.=+||--+.+-|...+.|..||++|+|..=.
T Consensus 681 IATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGs 733 (1112)
T PRK12901 681 IATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGS 733 (1112)
T ss_pred EeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCc
Confidence 5799999999975 55678888999999999999999999997653
No 159
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.66 E-value=3.8e-06 Score=92.04 Aligned_cols=82 Identities=15% Similarity=0.136 Sum_probs=60.0
Q ss_pred cchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCC-HHHHHHHHHHhcCCCCCcEEE
Q 006698 421 GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQD-VKKRQSSINVLNDPSSQARIM 497 (635)
Q Consensus 421 s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~-~~~r~~~i~~F~~~~~~~~vl 497 (635)
..|..++.+-+... .|..|||-|.++...+.|.+.|.+. |++..+++.... .++-.++|.+=-. .--+
T Consensus 407 ~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~-----gi~h~vLNAk~~~~~~EA~IIA~AG~----~G~V 477 (870)
T CHL00122 407 LSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEY-----RLPHQLLNAKPENVRRESEIVAQAGR----KGSI 477 (870)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHc-----CCccceeeCCCccchhHHHHHHhcCC----CCcE
Confidence 34666666544433 8999999999999999999999997 999999999742 2334455655322 2225
Q ss_pred EEccCCcccccccc
Q 006698 498 LASTKACCEGINLV 511 (635)
Q Consensus 498 l~st~~~~~GlnL~ 511 (635)
.++|..+|.|.|+.
T Consensus 478 TIATNMAGRGTDI~ 491 (870)
T CHL00122 478 TIATNMAGRGTDII 491 (870)
T ss_pred EEeccccCCCcCee
Confidence 55799999998864
No 160
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.66 E-value=7.1e-08 Score=94.64 Aligned_cols=103 Identities=10% Similarity=0.228 Sum_probs=89.5
Q ss_pred HHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCccccccc
Q 006698 431 LELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINL 510 (635)
Q Consensus 431 l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL 510 (635)
++.+.-.|.||||....-.|-|++++.+.-+ ..+.++.++|...+.+|.+-++.|.. .+++.+| +|++++.|||+
T Consensus 500 i~~h~mdkaiifcrtk~dcDnLer~~~qkgg--~~~scvclhgDrkP~Erk~nle~Fkk--~dvkfli-ctdvaargldi 574 (725)
T KOG0349|consen 500 IRRHAMDKAIIFCRTKQDCDNLERMMNQKGG--KHYSCVCLHGDRKPDERKANLESFKK--FDVKFLI-CTDVAARGLDI 574 (725)
T ss_pred hhhhccCceEEEEeccccchHHHHHHHHcCC--ccceeEEEecCCChhHHHHHHHhhhh--cCeEEEE-Eehhhhccccc
Confidence 3344678999999999999999999998732 24778899999999999999999998 4466555 79999999999
Q ss_pred ccCCeEEEeCCCCChhhHHhhhhhhhhc
Q 006698 511 VGASRVVLLDVVWNPFVERQAISRAYRL 538 (635)
Q Consensus 511 ~~a~~vi~~d~~wnp~~~~Qa~gR~~R~ 538 (635)
++...+|+..+|-....|..||||++|.
T Consensus 575 ~g~p~~invtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 575 TGLPFMINVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred cCCceEEEEecCcccchhhhhhhccchh
Confidence 9999999999999999999999988874
No 161
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.64 E-value=2.2e-06 Score=89.11 Aligned_cols=122 Identities=20% Similarity=0.228 Sum_probs=78.1
Q ss_pred CeEEEEcCChh----HHHHHHHHHHhhhc-ccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccc
Q 006698 437 EKVLVFSQYIE----PLTLIMEQLRHRFN-WREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLV 511 (635)
Q Consensus 437 ~kviIFs~~~~----~~~~l~~~L~~~~~-~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~ 511 (635)
.-++||-.-.+ +.+.|.+.|.+... ...++.+.-|...++.+-+. +-|+...++++-+|++|..+...|++.
T Consensus 564 GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~---kiFq~a~~~vRK~IvATNIAETSLTi~ 640 (1042)
T KOG0924|consen 564 GDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQA---KIFQKAEGGVRKCIVATNIAETSLTIP 640 (1042)
T ss_pred CCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhh---hhcccCCCCceeEEEeccchhhceeec
Confidence 34677765544 34455555544321 12367888888888876554 347754566777777899999999998
Q ss_pred cCCeEEEeC----CCCChh-----------hHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHH
Q 006698 512 GASRVVLLD----VVWNPF-----------VERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561 (635)
Q Consensus 512 ~a~~vi~~d----~~wnp~-----------~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~ 561 (635)
+...||=.. -.+||. .-.||.-|++|.|.+.+-..||++++++....++.
T Consensus 641 gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~ 705 (1042)
T KOG0924|consen 641 GIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLP 705 (1042)
T ss_pred ceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhccc
Confidence 877776321 123332 23344445555555668899999999888776664
No 162
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.63 E-value=5.9e-06 Score=93.50 Aligned_cols=78 Identities=14% Similarity=0.188 Sum_probs=51.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccc--c
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLV--G 512 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~--~ 512 (635)
.+.+++|+..+..+++.+.+.|... .+.. ...|... .|.+++++|+.+ +-.||+ .+....||+|++ .
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~-----~~~~-l~Qg~~~--~~~~l~~~F~~~--~~~vLl-G~~sFwEGVD~p~~~ 714 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQW-----QVSH-LAQEKNG--TAYNIKKRFDRG--EQQILL-GLGSFWEGVDFVQAD 714 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhc-----CCcE-EEeCCCc--cHHHHHHHHHcC--CCeEEE-ecchhhCCCCCCCCC
Confidence 4456777666667788888888653 3333 5556432 356789999873 334666 579999999996 3
Q ss_pred CCeEEEeCCCC
Q 006698 513 ASRVVLLDVVW 523 (635)
Q Consensus 513 a~~vi~~d~~w 523 (635)
+..||+.-+|+
T Consensus 715 ~~~viI~kLPF 725 (820)
T PRK07246 715 RMIEVITRLPF 725 (820)
T ss_pred eEEEEEecCCC
Confidence 55566665553
No 163
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.58 E-value=3.9e-07 Score=87.50 Aligned_cols=98 Identities=19% Similarity=0.212 Sum_probs=79.5
Q ss_pred HHHHHhcCCCCCcEEEEEccCCcccccccccC-------CeE-EEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCC
Q 006698 482 SSINVLNDPSSQARIMLASTKACCEGINLVGA-------SRV-VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553 (635)
Q Consensus 482 ~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a-------~~v-i~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~ 553 (635)
...+.|++ |...|+|+ +++|++||.|++- .+| |.+++||+.....|-.||+||-||..+..+..+++.-
T Consensus 52 ~e~~~F~~--g~k~v~ii-s~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMD--GEKDVAII-SDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhC--CCceEEEE-ecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 45679998 56788887 6999999999842 234 5699999999999999999999999854433455555
Q ss_pred ChHHHHHHHHHHhhhhhccccccCCCCCC
Q 006698 554 TLEWDKLRRQARKVWWSNMVFPSSDGGGN 582 (635)
Q Consensus 554 tiEe~i~~~~~~K~~~~~~~~~~~~~~~~ 582 (635)
..|.+......+|.....++..+.-...+
T Consensus 129 ~gE~Rfas~va~rL~sLgAlt~gdr~~~~ 157 (278)
T PF13871_consen 129 PGERRFASTVARRLESLGALTRGDRRAGG 157 (278)
T ss_pred HHHHHHHHHHHHHHhhccccccCcccccc
Confidence 77999999999999999999987766533
No 164
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.57 E-value=5.6e-05 Score=87.29 Aligned_cols=85 Identities=21% Similarity=0.289 Sum_probs=55.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCccccccccc--C
Q 006698 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVG--A 513 (635)
Q Consensus 436 ~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~--a 513 (635)
+.+++||..+...+..+.+.|...... .+ +..+.-+++...|.+++++|+.. +-.||+ .+.+..||+|+++ +
T Consensus 752 ~g~~LVLFtSy~~l~~v~~~l~~~~~~-~~--~~ll~Qg~~~~~r~~l~~~F~~~--~~~iLl-G~~sFwEGVD~pg~~l 825 (928)
T PRK08074 752 KGRMLVLFTSYEMLKKTYYNLKNEEEL-EG--YVLLAQGVSSGSRARLTKQFQQF--DKAILL-GTSSFWEGIDIPGDEL 825 (928)
T ss_pred CCCEEEEECCHHHHHHHHHHHhhcccc-cC--ceEEecCCCCCCHHHHHHHHHhc--CCeEEE-ecCcccCccccCCCce
Confidence 346666666667888888888754211 12 23333233334688999999973 234566 5889999999984 5
Q ss_pred CeEEEeCCCC-Chh
Q 006698 514 SRVVLLDVVW-NPF 526 (635)
Q Consensus 514 ~~vi~~d~~w-np~ 526 (635)
..||+.-+|+ +|.
T Consensus 826 ~~viI~kLPF~~p~ 839 (928)
T PRK08074 826 SCLVIVRLPFAPPD 839 (928)
T ss_pred EEEEEecCCCCCCC
Confidence 8888888777 444
No 165
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.56 E-value=7.5e-06 Score=89.65 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=61.0
Q ss_pred cchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCC-CCHHHHHHHHHHhcCCCCCcEEE
Q 006698 421 GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGK-QDVKKRQSSINVLNDPSSQARIM 497 (635)
Q Consensus 421 s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~-~~~~~r~~~i~~F~~~~~~~~vl 497 (635)
..|..++.+-+... .|..|||-|.++...+.|.+.|.+. |++..+++.. ...++-..+|.+=-. .| . +
T Consensus 422 ~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~-----gi~h~vLNAk~~~~~~EA~IIa~AG~-~G--a-V 492 (939)
T PRK12902 422 IAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQ-----GIPHNLLNAKPENVEREAEIVAQAGR-KG--A-V 492 (939)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHc-----CCchheeeCCCcchHhHHHHHHhcCC-CC--c-E
Confidence 45777777655544 8999999999999999999999998 9999999997 333444456655322 12 2 4
Q ss_pred EEccCCcccccccc
Q 006698 498 LASTKACCEGINLV 511 (635)
Q Consensus 498 l~st~~~~~GlnL~ 511 (635)
.++|..+|.|-|+.
T Consensus 493 TIATNMAGRGTDIk 506 (939)
T PRK12902 493 TIATNMAGRGTDII 506 (939)
T ss_pred EEeccCCCCCcCEe
Confidence 55799999997765
No 166
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.56 E-value=3.5e-07 Score=90.65 Aligned_cols=72 Identities=24% Similarity=0.297 Sum_probs=53.1
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCC----CcEEEeC-cc
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRC----RPVIIAP-RS 143 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~----~~LIv~P-~~ 143 (635)
+.||.|++-++.+++.+.. ++.+++-.++|+|||+..+..+..+....+.. +++++++ .+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~---------------~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~ 72 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDR---------------GKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVS 72 (289)
T ss_pred CCCHHHHHHHHHHHHHHHc---------------CCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHH
Confidence 3699999999888887654 56889999999999999988876665544432 6777777 44
Q ss_pred chHHHHHHHHHh
Q 006698 144 MLLTWEEEFKKW 155 (635)
Q Consensus 144 l~~qW~~E~~~~ 155 (635)
+..|-..++++.
T Consensus 73 ~~~q~i~~l~~~ 84 (289)
T smart00489 73 EIEKRLEELRKL 84 (289)
T ss_pred HHHHHHHHHHhc
Confidence 555555666554
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.56 E-value=3.5e-07 Score=90.65 Aligned_cols=72 Identities=24% Similarity=0.297 Sum_probs=53.1
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCC----CcEEEeC-cc
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRC----RPVIIAP-RS 143 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~----~~LIv~P-~~ 143 (635)
+.||.|++-++.+++.+.. ++.+++-.++|+|||+..+..+..+....+.. +++++++ .+
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~---------------~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~ 72 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDR---------------GKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVS 72 (289)
T ss_pred CCCHHHHHHHHHHHHHHHc---------------CCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHH
Confidence 3699999999888887654 56889999999999999988876665544432 6777777 44
Q ss_pred chHHHHHHHHHh
Q 006698 144 MLLTWEEEFKKW 155 (635)
Q Consensus 144 l~~qW~~E~~~~ 155 (635)
+..|-..++++.
T Consensus 73 ~~~q~i~~l~~~ 84 (289)
T smart00488 73 EIEKRLEELRKL 84 (289)
T ss_pred HHHHHHHHHHhc
Confidence 555555666554
No 168
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=1e-06 Score=93.11 Aligned_cols=65 Identities=28% Similarity=0.399 Sum_probs=47.6
Q ss_pred HHhcCCCCCcEEEEEccCCcccccccccCCeEEE--------eC---------CCC-ChhhHHhhhhhhhhcCCcceEEE
Q 006698 485 NVLNDPSSQARIMLASTKACCEGINLVGASRVVL--------LD---------VVW-NPFVERQAISRAYRLGQKRVVHV 546 (635)
Q Consensus 485 ~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~--------~d---------~~w-np~~~~Qa~gR~~R~GQ~~~V~v 546 (635)
.-|.....+.+..+++|.++.+.|++++...||= || ..| +-+.-.||-||++|+| +-+.
T Consensus 621 RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGHc 697 (1172)
T KOG0926|consen 621 RVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGHC 697 (1172)
T ss_pred hhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCce
Confidence 3455444457778889999999999998888763 22 334 4456679999999987 6678
Q ss_pred EEEEeC
Q 006698 547 YHLITS 552 (635)
Q Consensus 547 y~li~~ 552 (635)
|||+..
T Consensus 698 YRLYSS 703 (1172)
T KOG0926|consen 698 YRLYSS 703 (1172)
T ss_pred eehhhh
Confidence 888763
No 169
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.53 E-value=3.2e-06 Score=84.66 Aligned_cols=114 Identities=20% Similarity=0.216 Sum_probs=65.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHhh----hcccCCceEEEEeCCCCHHHHHHHHHHhc---CCCCCcEEEEEccCCccccc
Q 006698 436 NEKVLVFSQYIEPLTLIMEQLRHR----FNWREGQEVLYMDGKQDVKKRQSSINVLN---DPSSQARIMLASTKACCEGI 508 (635)
Q Consensus 436 ~~kviIFs~~~~~~~~l~~~L~~~----~~~~~g~~~~~i~G~~~~~~r~~~i~~F~---~~~~~~~vll~st~~~~~Gl 508 (635)
..-++||-......+...+.+... ........+.-+. +.+.+.+.+--. ++....+|+ +||..+...+
T Consensus 253 ~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvV-vstniaetsl 327 (699)
T KOG0925|consen 253 PGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVV-VSTNIAETSL 327 (699)
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEE-EEecchheee
Confidence 345788877665555444444321 1111123444444 334443332211 111234454 4899999888
Q ss_pred ccccCCeEEEeCCC------CCh-----------hhHHhhhhhhhhcCCcceEEEEEEEeCCChH
Q 006698 509 NLVGASRVVLLDVV------WNP-----------FVERQAISRAYRLGQKRVVHVYHLITSETLE 556 (635)
Q Consensus 509 nL~~a~~vi~~d~~------wnp-----------~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiE 556 (635)
.+.+.-.| .||. +|| ..-.||..|++|.|.+++-..++|+++..++
T Consensus 328 tidgiv~V--IDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~ 390 (699)
T KOG0925|consen 328 TIDGIVFV--IDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFE 390 (699)
T ss_pred eeccEEEE--ecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhh
Confidence 87765444 4554 344 4456888888888889999999999976555
No 170
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.45 E-value=7.8e-05 Score=83.24 Aligned_cols=75 Identities=23% Similarity=0.164 Sum_probs=46.2
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEE-EeCccchHH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVI-IAPRSMLLT 147 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LI-v~P~~l~~q 147 (635)
.=|-+|-.|++.+...-. .....+--++-...+|.|||+.-.-++.++.....+.+.-| +-=.+|-.|
T Consensus 408 ~rF~WQdkA~d~a~~~r~-----------~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQ 476 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQ-----------KSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQ 476 (1110)
T ss_pred CCcchHHHHHHHHHHHHh-----------hcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceecc
Confidence 356788888887754321 12223445677889999999888877766655444434322 222566666
Q ss_pred HHHHHHH
Q 006698 148 WEEEFKK 154 (635)
Q Consensus 148 W~~E~~~ 154 (635)
--+++++
T Consensus 477 TGda~r~ 483 (1110)
T TIGR02562 477 TGHALKT 483 (1110)
T ss_pred chHHHHH
Confidence 6666654
No 171
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.42 E-value=5.2e-06 Score=86.24 Aligned_cols=110 Identities=22% Similarity=0.236 Sum_probs=71.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhc----ccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCccccccc
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFN----WREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINL 510 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~----~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL 510 (635)
+..-+|||-.-.+..+..++.|.+... ....+-++-|..+.+.+.+..+ |.....+++-+++.|..+...|++
T Consensus 472 p~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTI 548 (902)
T KOG0923|consen 472 PLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTI 548 (902)
T ss_pred CCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceee
Confidence 445688887776666655555554422 1224567778999987766544 653333344444469999999999
Q ss_pred ccCCeEEEeCCCC------Ch--------------hhHHhhhhhhhhcCCcceEEEEEEEeC
Q 006698 511 VGASRVVLLDVVW------NP--------------FVERQAISRAYRLGQKRVVHVYHLITS 552 (635)
Q Consensus 511 ~~a~~vi~~d~~w------np--------------~~~~Qa~gR~~R~GQ~~~V~vy~li~~ 552 (635)
.+...|| ||.+ || +.-.||-||++|.| +-..|||++.
T Consensus 549 dgI~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRLYt~ 605 (902)
T KOG0923|consen 549 DGIKYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRLYTA 605 (902)
T ss_pred cCeEEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEeech
Confidence 8877765 4443 33 35679999998877 5556777774
No 172
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.31 E-value=2.7e-05 Score=85.42 Aligned_cols=131 Identities=8% Similarity=-0.062 Sum_probs=82.4
Q ss_pred EEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhh
Q 006698 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRK 185 (635)
Q Consensus 107 iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 185 (635)
|+..-.|+|||-.-+.++...+..+. .+||++| .++..|+.+.|+..+++..+..+|+....+...+.+. ...
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk--~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~----~~~ 237 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGR--GALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWL----AVL 237 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCC--eEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHH----HHh
Confidence 33333599999999988888776544 5899999 8899999999998887556777776443332222221 111
Q ss_pred cCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhhhhccCCCEEEEeCCCc--CCCcccHHHHH----HH--h
Q 006698 186 RGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHT--PRNDDTCMFKA----LS--R 257 (635)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~~~~~~~~~vIvDEaH~--~kn~~s~~~~~----l~--~ 257 (635)
.....|||-|.+.+-. -....++|||||=|. +|...+..+.+ +. .
T Consensus 238 -----------------~G~~~IViGtRSAvFa----------P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~ 290 (665)
T PRK14873 238 -----------------RGQARVVVGTRSAVFA----------PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH 290 (665)
T ss_pred -----------------CCCCcEEEEcceeEEe----------ccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH
Confidence 1245678877754211 122358999999996 44433322211 11 1
Q ss_pred cccCcEEEEeccc
Q 006698 258 IKTRRRIILSGTP 270 (635)
Q Consensus 258 l~~~~~l~LTgTP 270 (635)
...-..++.|+||
T Consensus 291 ~~~~~lvLgSaTP 303 (665)
T PRK14873 291 QHGCALLIGGHAR 303 (665)
T ss_pred HcCCcEEEECCCC
Confidence 1445578889999
No 173
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.18 E-value=6.2e-06 Score=79.81 Aligned_cols=67 Identities=25% Similarity=0.379 Sum_probs=47.9
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCc-eEEeCCCCchHHHHHHHHHHHHH------HhCCCCCcEEEeC
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNG-CIISHAPGTGKTGLTLVFLQAYM------KLHPRCRPVIIAP 141 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g-~iLad~~GlGKT~~ai~~i~~~~------~~~~~~~~LIv~P 141 (635)
+|-+.|.+|+..++. ..+ +++..++|+|||.+..+++..+. .....+++||++|
T Consensus 1 ~ln~~Q~~Ai~~~~~-------------------~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~ 61 (236)
T PF13086_consen 1 KLNESQREAIQSALS-------------------SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSP 61 (236)
T ss_dssp ---HHHHHHHHHHCT-------------------SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEES
T ss_pred CCCHHHHHHHHHHHc-------------------CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecC
Confidence 367899999987754 345 89999999999987777776662 2456678899999
Q ss_pred -ccchHHHHHHHHH
Q 006698 142 -RSMLLTWEEEFKK 154 (635)
Q Consensus 142 -~~l~~qW~~E~~~ 154 (635)
+..+.+-...+.+
T Consensus 62 sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 62 SNAAVDNILERLKK 75 (236)
T ss_dssp SHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHh
Confidence 6677777777766
No 174
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.95 E-value=2.4e-05 Score=72.38 Aligned_cols=157 Identities=19% Similarity=0.139 Sum_probs=71.5
Q ss_pred ccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHH
Q 006698 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWE 149 (635)
Q Consensus 70 L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~ 149 (635)
+-+.|..+++.+.+ ..-+++..+.|+|||+.|++.+..+...+...+.+|+-|..-..
T Consensus 5 ~~~~Q~~~~~al~~-------------------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~--- 62 (205)
T PF02562_consen 5 KNEEQKFALDALLN-------------------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAG--- 62 (205)
T ss_dssp -SHHHHHHHHHHHH--------------------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT---
T ss_pred CCHHHHHHHHHHHh-------------------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCc---
Confidence 55799999998874 45789999999999999999998888877766777776754331
Q ss_pred HHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhhhh
Q 006698 150 EEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGIL 229 (635)
Q Consensus 150 ~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~~~ 229 (635)
+++- |.|+-- ..+.........+.+..-... ...........+-+.+...++-.. +
T Consensus 63 ~~lG-flpG~~---------~eK~~p~~~p~~d~l~~~~~~------~~~~~~~~~~~Ie~~~~~~iRGrt-------~- 118 (205)
T PF02562_consen 63 EDLG-FLPGDL---------EEKMEPYLRPIYDALEELFGK------EKLEELIQNGKIEIEPLAFIRGRT-------F- 118 (205)
T ss_dssp -----SS------------------TTTHHHHHHHTTTS-T------TCHHHHHHTTSEEEEEGGGGTT---------B-
T ss_pred cccc-cCCCCH---------HHHHHHHHHHHHHHHHHHhCh------HhHHHHhhcCeEEEEehhhhcCcc-------c-
Confidence 2221 122100 000000000001111000000 000000123345555543332211 0
Q ss_pred ccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChh
Q 006698 230 LDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQ 276 (635)
Q Consensus 230 ~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~ 276 (635)
...+||+|||+++. ..+....+.++....++.++|-|.|.+..
T Consensus 119 --~~~~iIvDEaQN~t--~~~~k~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 119 --DNAFIIVDEAQNLT--PEELKMILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp ---SEEEEE-SGGG----HHHHHHHHTTB-TT-EEEEEE--------
T ss_pred --cceEEEEecccCCC--HHHHHHHHcccCCCcEEEEecCceeecCC
Confidence 13789999999874 23455566677778899999999765443
No 175
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.95 E-value=0.00047 Score=75.64 Aligned_cols=110 Identities=20% Similarity=0.221 Sum_probs=79.5
Q ss_pred cchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 006698 421 GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498 (635)
Q Consensus 421 s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll 498 (635)
..|..++.+-+... .|.+|||-+.+....+.+.+.|.+. |++..+++.... .|+.-+-.+.-..| .|-|
T Consensus 412 ~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~-----~i~h~VLNAk~h--~~EA~Iia~AG~~g--aVTi 482 (822)
T COG0653 412 EEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKA-----GIPHNVLNAKNH--AREAEIIAQAGQPG--AVTI 482 (822)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhc-----CCCceeeccccH--HHHHHHHhhcCCCC--cccc
Confidence 34666666655554 9999999999999999999999987 999999988865 44444444432112 2444
Q ss_pred EccCCcccccccc-cCC----------eEEEeCCCCChhhHHhhhhhhhhcCC
Q 006698 499 ASTKACCEGINLV-GAS----------RVVLLDVVWNPFVERQAISRAYRLGQ 540 (635)
Q Consensus 499 ~st~~~~~GlnL~-~a~----------~vi~~d~~wnp~~~~Qa~gR~~R~GQ 540 (635)
+|..+|.|-|+. +.+ .||=-+-.=+-..+.|-.||++|+|-
T Consensus 483 -ATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGD 534 (822)
T COG0653 483 -ATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGD 534 (822)
T ss_pred -ccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCC
Confidence 799999999987 444 24444444455556699999999994
No 176
>PRK10536 hypothetical protein; Provisional
Probab=97.73 E-value=0.00012 Score=69.76 Aligned_cols=156 Identities=12% Similarity=0.005 Sum_probs=82.6
Q ss_pred ccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHH
Q 006698 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWE 149 (635)
Q Consensus 70 L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~ 149 (635)
.-..|...+.++.+ ..-+++..+.|+|||+.|+++....+..+.. ..++|+-+.+-.
T Consensus 60 ~n~~Q~~~l~al~~-------------------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~-~kIiI~RP~v~~--- 116 (262)
T PRK10536 60 RNEAQAHYLKAIES-------------------KQLIFATGEAGCGKTWISAAKAAEALIHKDV-DRIIVTRPVLQA--- 116 (262)
T ss_pred CCHHHHHHHHHHhc-------------------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCe-eEEEEeCCCCCc---
Confidence 56788888887743 3478899999999999999998765433332 224443333321
Q ss_pred HHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeec-c-ccCCCeEEeeHHHHHHhhcchhhhh
Q 006698 150 EEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYS-W-KMGTGILGLSYRLFEKLVSGDELSG 227 (635)
Q Consensus 150 ~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~vvi~ty~~~~~~~~~~~~~~ 227 (635)
.|.-.|.|+----. -..-...+++.+..--.. . .... + .....|-+.+...++-..
T Consensus 117 ge~LGfLPG~~~eK---------~~p~~~pi~D~L~~~~~~-~-----~~~~~~~~~~~~Iei~~l~ymRGrt------- 174 (262)
T PRK10536 117 DEDLGFLPGDIAEK---------FAPYFRPVYDVLVRRLGA-S-----FMQYCLRPEIGKVEIAPFAYMRGRT------- 174 (262)
T ss_pred hhhhCcCCCCHHHH---------HHHHHHHHHHHHHHHhCh-H-----HHHHHHHhccCcEEEecHHHhcCCc-------
Confidence 34444444310000 000000011111000000 0 0000 0 012335555554443211
Q ss_pred hhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCCh
Q 006698 228 ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275 (635)
Q Consensus 228 ~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~ 275 (635)
+ .-++||+|||+++.- .+....+.++....+++++|-|-|.+.
T Consensus 175 l---~~~~vIvDEaqn~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 175 F---ENAVVILDEAQNVTA--AQMKMFLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred c---cCCEEEEechhcCCH--HHHHHHHhhcCCCCEEEEeCChhhccC
Confidence 1 127899999999853 456666777888899999999966543
No 177
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.72 E-value=0.00014 Score=74.75 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=36.2
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHH-HHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTW-EEEFKK 154 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW-~~E~~~ 154 (635)
-+++-..+|+|||+.|+.++..+........++++|++..+.+. ...+.+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAK 53 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhh
Confidence 35778889999999999999877444455677999996655553 444443
No 178
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.59 E-value=0.00014 Score=73.82 Aligned_cols=60 Identities=27% Similarity=0.439 Sum_probs=44.4
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCC-CCcEEEeCcc
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPR-CRPVIIAPRS 143 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~-~~~LIv~P~~ 143 (635)
..||-|.+=..-+.+.+ +.++.|+|-.+.|+|||+.-++++.+|....|. .+-||-|...
T Consensus 16 ~iYPEQ~~YM~elKrsL---------------DakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRT 76 (755)
T KOG1131|consen 16 YIYPEQYEYMRELKRSL---------------DAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRT 76 (755)
T ss_pred ccCHHHHHHHHHHHHhh---------------ccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCc
Confidence 47788875444333322 347799999999999999999999999888874 3348888743
No 179
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.55 E-value=0.00084 Score=62.63 Aligned_cols=58 Identities=26% Similarity=0.310 Sum_probs=39.9
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccch
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSML 145 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~ 145 (635)
+|-+-|++++..++.. +.+-++|....|+|||...-.+...+... ..++++++|.+-.
T Consensus 1 ~L~~~Q~~a~~~~l~~-----------------~~~~~~l~G~aGtGKT~~l~~~~~~~~~~--g~~v~~~apT~~A 58 (196)
T PF13604_consen 1 TLNEEQREAVRAILTS-----------------GDRVSVLQGPAGTGKTTLLKALAEALEAA--GKRVIGLAPTNKA 58 (196)
T ss_dssp -S-HHHHHHHHHHHHC-----------------TCSEEEEEESTTSTHHHHHHHHHHHHHHT--T--EEEEESSHHH
T ss_pred CCCHHHHHHHHHHHhc-----------------CCeEEEEEECCCCCHHHHHHHHHHHHHhC--CCeEEEECCcHHH
Confidence 3678999999998753 23457888999999998766655444443 3688999996544
No 180
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.47 E-value=0.0003 Score=75.88 Aligned_cols=142 Identities=15% Similarity=0.086 Sum_probs=86.8
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCc-cchHH---HHHHHHHhc-----CCC--cccccCCCCC
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPR-SMLLT---WEEEFKKWG-----IDI--PFYNLNKPEL 169 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~q---W~~E~~~~~-----~~~--~v~~~~~~~~ 169 (635)
+..-++=+-+|+|+|||++-+-.+.++.+..+..+.+||||. +...- --+++..++ .+. ..+.++.
T Consensus 72 ~~~lNiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~--- 148 (985)
T COG3587 72 DDKLNIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDE--- 148 (985)
T ss_pred CCcceeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeech---
Confidence 345578888999999999999999999998888899999994 43322 222333332 211 1111110
Q ss_pred cCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHh---hcc---h-----h-------hhhhhcc
Q 006698 170 SGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL---VSG---D-----E-------LSGILLD 231 (635)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~---~~~---~-----~-------~~~~~~~ 231 (635)
+ .. .. ...-.....+++++.+.+.+. .+. + . .-..+..
T Consensus 149 -~-----~~---~~---------------~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~ 204 (985)
T COG3587 149 -D-----IE---KF---------------KFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALAS 204 (985)
T ss_pred -H-----HH---HH---------------hhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHh
Confidence 0 00 00 000123455777777776655 111 0 0 0000111
Q ss_pred CCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEeccc
Q 006698 232 LPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTP 270 (635)
Q Consensus 232 ~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP 270 (635)
.--+||+||-|++... .+.+.++..+.+...+=.+||=
T Consensus 205 ~rPIvIvDEPh~f~~~-~k~~~~i~~l~pl~ilRfgATf 242 (985)
T COG3587 205 MRPIVIVDEPHRFLGD-DKTYGAIKQLNPLLILRFGATF 242 (985)
T ss_pred cCCEEEecChhhcccc-hHHHHHHHhhCceEEEEecccc
Confidence 1247999999999875 7899999999988888889983
No 181
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.46 E-value=0.00019 Score=74.75 Aligned_cols=67 Identities=25% Similarity=0.305 Sum_probs=53.1
Q ss_pred hHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-cc
Q 006698 65 DVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RS 143 (635)
Q Consensus 65 ~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~ 143 (635)
.+...|-+-|+.|+.++... ..-.++-.++|+|||.+..-++..+.+.+ +++||.+| ..
T Consensus 181 ~~~~~ln~SQk~Av~~~~~~------------------k~l~~I~GPPGTGKT~TlvEiI~qlvk~~--k~VLVcaPSn~ 240 (649)
T KOG1803|consen 181 FFNKNLNSSQKAAVSFAINN------------------KDLLIIHGPPGTGKTRTLVEIISQLVKQK--KRVLVCAPSNV 240 (649)
T ss_pred cCCccccHHHHHHHHHHhcc------------------CCceEeeCCCCCCceeeHHHHHHHHHHcC--CeEEEEcCchH
Confidence 35667889999999998653 23568889999999999999988887765 57999999 45
Q ss_pred chHHHHHH
Q 006698 144 MLLTWEEE 151 (635)
Q Consensus 144 l~~qW~~E 151 (635)
.+.|-.+.
T Consensus 241 AVdNiver 248 (649)
T KOG1803|consen 241 AVDNIVER 248 (649)
T ss_pred HHHHHHHH
Confidence 56776664
No 182
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.39 E-value=0.00073 Score=73.37 Aligned_cols=89 Identities=20% Similarity=0.240 Sum_probs=60.7
Q ss_pred cChhHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC----------
Q 006698 62 VPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH---------- 131 (635)
Q Consensus 62 ~p~~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~---------- 131 (635)
+|-.+-.++||-|+.-...++..+.. ..+|+|-+++|+|||+.-|+...++.+..
T Consensus 14 v~V~fP~qpY~~Q~a~M~rvl~~L~~---------------~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s 78 (945)
T KOG1132|consen 14 VPVEFPFQPYPTQLAFMTRVLSCLDR---------------KQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKIS 78 (945)
T ss_pred ceeeccCCcchHHHHHHHHHHHHHHH---------------hhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchh
Confidence 44456667899999888888877654 55799999999999977665444443311
Q ss_pred ------------------------C-----CCCcEEEeCc--cchHHHHHHHHHhcCCCcccccC
Q 006698 132 ------------------------P-----RCRPVIIAPR--SMLLTWEEEFKKWGIDIPFYNLN 165 (635)
Q Consensus 132 ------------------------~-----~~~~LIv~P~--~l~~qW~~E~~~~~~~~~v~~~~ 165 (635)
+ ..|.++.+-. +-+.|-.+|+.+.....+..++.
T Consensus 79 ~~~~~~~p~~~s~~~g~~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtVLg 143 (945)
T KOG1132|consen 79 ERKAGFIPTQPSDSGGEKSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTVLG 143 (945)
T ss_pred hhhccccCCCCccCCCCchhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCceEEee
Confidence 0 1233677763 34788999999886556555543
No 183
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.21 E-value=0.0011 Score=68.07 Aligned_cols=134 Identities=15% Similarity=0.025 Sum_probs=94.3
Q ss_pred cchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccC---CceEEEEeCCCCHHHHHHHHHHhcCCCCCcE
Q 006698 421 GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWRE---GQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495 (635)
Q Consensus 421 s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~---g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~ 495 (635)
+.|+.....++.+. .+-+.|-||..+...+.+....+..|--.. -..+..+.|+.+.++|.++-...=. |+..
T Consensus 508 ~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~--G~L~ 585 (1034)
T KOG4150|consen 508 SSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG--GKLC 585 (1034)
T ss_pred hhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC--Ceee
Confidence 34444444444443 788999999999888776655544431100 1224557889889999888765432 5555
Q ss_pred EEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcc-eEEEEEEEeCCChHHHHH
Q 006698 496 IMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKR-VVHVYHLITSETLEWDKL 560 (635)
Q Consensus 496 vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~-~V~vy~li~~~tiEe~i~ 560 (635)
-+| +|.++..|||+...+.|+++..|.+.+.+.|.-||++|-.... .|+| ...+.+|...+
T Consensus 586 giI-aTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyv---a~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 586 GII-ATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYV---AFLGPVDQYYM 647 (1034)
T ss_pred EEE-ecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEE---EeccchhhHhh
Confidence 555 7999999999999999999999999999999999999976443 3433 33455665443
No 184
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.19 E-value=0.00067 Score=58.78 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=27.0
Q ss_pred CEEEEeCCCcCCCcccHHHHHHHhc--ccCcEEEEeccc
Q 006698 234 GLFVFDEGHTPRNDDTCMFKALSRI--KTRRRIILSGTP 270 (635)
Q Consensus 234 ~~vIvDEaH~~kn~~s~~~~~l~~l--~~~~~l~LTgTP 270 (635)
.+|||||+|++. +......++.+ ...-.++++|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 589999999984 24566666666 666689999999
No 185
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.16 E-value=0.003 Score=59.10 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=53.8
Q ss_pred HhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchH
Q 006698 67 RKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLL 146 (635)
Q Consensus 67 ~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~ 146 (635)
+-.+||-|.+.+..|.+. ..+.+.++=.-||-|||-+.+=++...+..+ ..=+-+|||++++.
T Consensus 21 ~iliR~~Q~~ia~~mi~~----------------~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg-~~LvrviVpk~Ll~ 83 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISP----------------PSGKNSVMQLNMGEGKTSVIVPMLALALADG-SRLVRVIVPKALLE 83 (229)
T ss_pred CceeeHHHHHHHHHHhCC----------------CCCCCeEeeecccCCccchHHHHHHHHHcCC-CcEEEEEcCHHHHH
Confidence 346999999999998653 2357889999999999977665554444433 23457999999999
Q ss_pred HHHHHHHHh
Q 006698 147 TWEEEFKKW 155 (635)
Q Consensus 147 qW~~E~~~~ 155 (635)
|-.+-+..-
T Consensus 84 q~~~~L~~~ 92 (229)
T PF12340_consen 84 QMRQMLRSR 92 (229)
T ss_pred HHHHHHHHH
Confidence 988887754
No 186
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.16 E-value=0.0038 Score=68.01 Aligned_cols=56 Identities=30% Similarity=0.389 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCC---CCcEEEeCccchH
Q 006698 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPR---CRPVIIAPRSMLL 146 (635)
Q Consensus 72 p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~---~~~LIv~P~~l~~ 146 (635)
+.|+.|+..++. .+-++|...+|+|||.+...++..+.+..+. .++++++|..--.
T Consensus 148 ~~Qk~A~~~al~-------------------~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA 206 (586)
T TIGR01447 148 NWQKVAVALALK-------------------SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAA 206 (586)
T ss_pred HHHHHHHHHHhh-------------------CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHH
Confidence 678888877755 4578999999999999888887766654432 3678899965443
No 187
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=97.16 E-value=0.0088 Score=67.57 Aligned_cols=106 Identities=20% Similarity=0.283 Sum_probs=71.7
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccch-----HHHHHHHHHhcCCCcccccCCCCCcCcccch
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSML-----LTWEEEFKKWGIDIPFYNLNKPELSGKENNG 176 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~-----~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~ 176 (635)
.+.+++++.+.|+|||+.|-.++ ++.....++..++|...+ .-|..-|... .+.++..+.|....+..-
T Consensus 1158 ~nd~v~vga~~gsgkt~~ae~a~---l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~lkl-- 1231 (1674)
T KOG0951|consen 1158 TNDNVLVGAPNGSGKTACAELAL---LRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDLKL-- 1231 (1674)
T ss_pred ccceEEEecCCCCchhHHHHHHh---cCCccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccchHH--
Confidence 46789999999999998775444 234555678999997665 4566666654 455565555433222111
Q ss_pred hhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhhhhccCCCEEEEeCCCcCCCc
Q 006698 177 AVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND 247 (635)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~ 247 (635)
....+++|.|++.+..+. . ....++.|+||.|.+.+.
T Consensus 1232 --------------------------~~~~~vii~tpe~~d~lq---~-----iQ~v~l~i~d~lh~igg~ 1268 (1674)
T KOG0951|consen 1232 --------------------------LQKGQVIISTPEQWDLLQ---S-----IQQVDLFIVDELHLIGGV 1268 (1674)
T ss_pred --------------------------hhhcceEEechhHHHHHh---h-----hhhcceEeeehhhhhccc
Confidence 245689999999876652 1 123589999999999764
No 188
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.15 E-value=0.0043 Score=69.69 Aligned_cols=67 Identities=22% Similarity=0.257 Sum_probs=48.8
Q ss_pred HHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccch
Q 006698 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSML 145 (635)
Q Consensus 66 l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~ 145 (635)
....|-+-|++|+..+.. .+-++|...+|+|||.++-+++..+...++..++++++|....
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~-------------------~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~A 380 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQ-------------------HKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRA 380 (720)
T ss_pred cCCCCCHHHHHHHHHHHh-------------------CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHH
Confidence 345689999999988743 3478999999999998877777665554433567888997766
Q ss_pred HHHHHH
Q 006698 146 LTWEEE 151 (635)
Q Consensus 146 ~qW~~E 151 (635)
.....|
T Consensus 381 A~~L~e 386 (720)
T TIGR01448 381 AKRLGE 386 (720)
T ss_pred HHHHHH
Confidence 554433
No 189
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.15 E-value=0.0018 Score=58.64 Aligned_cols=100 Identities=24% Similarity=0.380 Sum_probs=61.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccC--Ccccccccc-
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTK--ACCEGINLV- 511 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~--~~~~GlnL~- 511 (635)
.+.+++||..+-..++.+.+.+....... ++. +...+ ..++..+++.|..+. -.|++ ++. ..+||+|+.
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~-~~~-v~~q~---~~~~~~~l~~~~~~~--~~il~-~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEK-GIP-VFVQG---SKSRDELLEEFKRGE--GAILL-AVAGGSFSEGIDFPG 79 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-E-TSC-EEEST---CCHHHHHHHHHCCSS--SEEEE-EETTSCCGSSS--EC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccc-cce-eeecC---cchHHHHHHHHHhcc--CeEEE-EEecccEEEeecCCC
Confidence 34789999999899999988887652110 222 22222 457889999999833 33444 566 899999998
Q ss_pred -cCCeEEEeCCCC-Chh-----------------------------hHHhhhhhhhhcCCcc
Q 006698 512 -GASRVVLLDVVW-NPF-----------------------------VERQAISRAYRLGQKR 542 (635)
Q Consensus 512 -~a~~vi~~d~~w-np~-----------------------------~~~Qa~gR~~R~GQ~~ 542 (635)
.|..||+.-+|+ +|. ...|++||+.|-.+.+
T Consensus 80 ~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~ 141 (167)
T PF13307_consen 80 DLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDY 141 (167)
T ss_dssp ESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-E
T ss_pred chhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCc
Confidence 588889988886 232 2358999999966544
No 190
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.92 E-value=0.0031 Score=61.02 Aligned_cols=127 Identities=12% Similarity=0.035 Sum_probs=66.2
Q ss_pred HhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccch-
Q 006698 67 RKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSML- 145 (635)
Q Consensus 67 ~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~- 145 (635)
+..+|+-|+-|+-.| ..|-|.=..+|=|||+++...+ ++....++++=||+.+.-+
T Consensus 75 g~~p~~vQll~~l~L---------------------~~G~laEm~TGEGKTli~~l~a--~~~AL~G~~V~vvT~NdyLA 131 (266)
T PF07517_consen 75 GLRPYDVQLLGALAL---------------------HKGRLAEMKTGEGKTLIAALPA--ALNALQGKGVHVVTSNDYLA 131 (266)
T ss_dssp S----HHHHHHHHHH---------------------HTTSEEEESTTSHHHHHHHHHH--HHHHTTSS-EEEEESSHHHH
T ss_pred CCcccHHHHhhhhhc---------------------ccceeEEecCCCCcHHHHHHHH--HHHHHhcCCcEEEeccHHHh
Confidence 445677777777555 2366999999999998886544 2333445577788886655
Q ss_pred ---HHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcc
Q 006698 146 ---LTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222 (635)
Q Consensus 146 ---~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~ 222 (635)
.+|...+-++. ++.+-.... +....... . .-..+|+=+|-..|..+.-.
T Consensus 132 ~RD~~~~~~~y~~L-Glsv~~~~~----~~~~~~r~---~--------------------~Y~~dI~Y~t~~~~~fD~Lr 183 (266)
T PF07517_consen 132 KRDAEEMRPFYEFL-GLSVGIITS----DMSSEERR---E--------------------AYAADIVYGTNSEFGFDYLR 183 (266)
T ss_dssp HHHHHHHHHHHHHT-T--EEEEET----TTEHHHHH---H--------------------HHHSSEEEEEHHHHHHHHHH
T ss_pred hccHHHHHHHHHHh-hhccccCcc----ccCHHHHH---H--------------------HHhCcccccccchhhHHHHH
Confidence 34555555542 222222111 11111000 0 01456777777776653222
Q ss_pred hhh----hhhhccCCCEEEEeCCCcC
Q 006698 223 DEL----SGILLDLPGLFVFDEGHTP 244 (635)
Q Consensus 223 ~~~----~~~~~~~~~~vIvDEaH~~ 244 (635)
+.+ .......++++||||+..+
T Consensus 184 d~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 184 DNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp HTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred HHHhhccchhccCCCCEEEEeccceE
Confidence 111 1122356899999999754
No 191
>PRK04296 thymidine kinase; Provisional
Probab=96.82 E-value=0.0038 Score=57.97 Aligned_cols=35 Identities=20% Similarity=0.148 Sum_probs=26.3
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
=.++..+||+|||..++.++..+... ..+++|+-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEec
Confidence 35788999999999999888766543 346677744
No 192
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.77 E-value=0.0087 Score=65.44 Aligned_cols=57 Identities=30% Similarity=0.387 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCC--CCCcEEEeCccchHH
Q 006698 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP--RCRPVIIAPRSMLLT 147 (635)
Q Consensus 72 p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~--~~~~LIv~P~~l~~q 147 (635)
+.|++|+.-... .+-++|...+|+|||.+...++..+.+... ..++++++|..--..
T Consensus 155 d~Qk~Av~~a~~-------------------~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~ 213 (615)
T PRK10875 155 DWQKVAAAVALT-------------------RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAA 213 (615)
T ss_pred HHHHHHHHHHhc-------------------CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHH
Confidence 689998876644 457899999999999988888777655432 235678889655433
No 193
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.74 E-value=0.0062 Score=59.82 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=22.7
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHh
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKL 130 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~ 130 (635)
..+.+|..++|+|||..|-+++..+...
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~ 69 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEM 69 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 4578999999999999998887665443
No 194
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.67 E-value=0.0089 Score=67.06 Aligned_cols=85 Identities=16% Similarity=0.288 Sum_probs=54.6
Q ss_pred HHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCC--CCCcEEEEEccCCcc
Q 006698 428 LILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDP--SSQARIMLASTKACC 505 (635)
Q Consensus 428 ~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~--~~~~~vll~st~~~~ 505 (635)
.+++. .++ +++||..+...++.+...|.... +.. +.+.|. ..|.++++.|.+. .++-.||+ .+....
T Consensus 528 ~~l~~-~~g-g~LVlFtSy~~l~~v~~~l~~~~----~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~-g~~sf~ 596 (697)
T PRK11747 528 PELLE-KHK-GSLVLFASRRQMQKVADLLPRDL----RLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLF-GLQSFA 596 (697)
T ss_pred HHHHh-cCC-CEEEEeCcHHHHHHHHHHHHHhc----CCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEE-Eecccc
Confidence 33444 344 46776666677778888887542 333 444564 3567788777631 12234566 578899
Q ss_pred cccccc--cCCeEEEeCCCC
Q 006698 506 EGINLV--GASRVVLLDVVW 523 (635)
Q Consensus 506 ~GlnL~--~a~~vi~~d~~w 523 (635)
||+|++ .++.||+.-+|+
T Consensus 597 EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 597 EGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred ccccCCCCceEEEEEEcCCC
Confidence 999998 478898888776
No 195
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.56 E-value=0.33 Score=55.15 Aligned_cols=67 Identities=10% Similarity=0.063 Sum_probs=47.9
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC--CCCCcEEEeC-ccch
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH--PRCRPVIIAP-RSML 145 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~--~~~~~LIv~P-~~l~ 145 (635)
.|-|-|+++|..- .+.+++...+|+|||.+...-+..+.... +..++|+|+. +...
T Consensus 4 ~Ln~~Q~~av~~~---------------------~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA 62 (715)
T TIGR01075 4 GLNDKQREAVAAP---------------------PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAA 62 (715)
T ss_pred ccCHHHHHHHcCC---------------------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHH
Confidence 4789999998642 45788888889999999998888877643 2345588888 4455
Q ss_pred HHHHHHHHHhc
Q 006698 146 LTWEEEFKKWG 156 (635)
Q Consensus 146 ~qW~~E~~~~~ 156 (635)
..-++-+.+..
T Consensus 63 ~em~~Rl~~~~ 73 (715)
T TIGR01075 63 AEMRHRIGALL 73 (715)
T ss_pred HHHHHHHHHHh
Confidence 55555565553
No 196
>PF13245 AAA_19: Part of AAA domain
Probab=96.42 E-value=0.0084 Score=46.02 Aligned_cols=49 Identities=22% Similarity=0.329 Sum_probs=35.0
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHHHh--CCCCCcEEEeCcc-chHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYMKL--HPRCRPVIIAPRS-MLLTWEEEF 152 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~~~--~~~~~~LIv~P~~-l~~qW~~E~ 152 (635)
+-+++-.++|+|||.+++..+..+... .+..++|+++|.. .+.+-.+.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 346669999999999999888887743 3356789999954 444433333
No 197
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.40 E-value=0.024 Score=56.24 Aligned_cols=30 Identities=30% Similarity=0.314 Sum_probs=24.2
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHP 132 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~ 132 (635)
+.+.++..++|+|||..|.+++..+...+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 447899999999999999888877665443
No 198
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.37 E-value=0.0063 Score=64.12 Aligned_cols=74 Identities=20% Similarity=0.259 Sum_probs=58.9
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLT 147 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~q 147 (635)
+|-.-|..||...+.+. =.||-.++|+|||++..+++..+.+. ..+++|+++| +..+.|
T Consensus 410 kLN~SQ~~AV~~VL~rp-------------------lsLIQGPPGTGKTvtsa~IVyhl~~~-~~~~VLvcApSNiAVDq 469 (935)
T KOG1802|consen 410 KLNASQSNAVKHVLQRP-------------------LSLIQGPPGTGKTVTSATIVYHLARQ-HAGPVLVCAPSNIAVDQ 469 (935)
T ss_pred hhchHHHHHHHHHHcCC-------------------ceeeecCCCCCceehhHHHHHHHHHh-cCCceEEEcccchhHHH
Confidence 57889999999998754 45999999999999988888777666 5679999999 566788
Q ss_pred HHHHHHHhcCCCccccc
Q 006698 148 WEEEFKKWGIDIPFYNL 164 (635)
Q Consensus 148 W~~E~~~~~~~~~v~~~ 164 (635)
-.+.|.+.+ ++|+.+
T Consensus 470 LaeKIh~tg--LKVvRl 484 (935)
T KOG1802|consen 470 LAEKIHKTG--LKVVRL 484 (935)
T ss_pred HHHHHHhcC--ceEeee
Confidence 888888764 555443
No 199
>PRK06526 transposase; Provisional
Probab=96.37 E-value=0.012 Score=57.03 Aligned_cols=46 Identities=20% Similarity=0.298 Sum_probs=32.7
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKK 154 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~ 154 (635)
+.+.+|..++|+|||..|.++.....+.+ .+++++.. .+|.+++..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g--~~v~f~t~----~~l~~~l~~ 143 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAG--HRVLFATA----AQWVARLAA 143 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCC--CchhhhhH----HHHHHHHHH
Confidence 66899999999999999999987776543 34444322 456666553
No 200
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.35 E-value=0.67 Score=52.73 Aligned_cols=68 Identities=12% Similarity=0.113 Sum_probs=48.1
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC--CCCCcEEEeC-ccc
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH--PRCRPVIIAP-RSM 144 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~--~~~~~LIv~P-~~l 144 (635)
..|-|-|+++|.+- .+.+++-...|+|||.+.+.-+..+.... +..++|+|+- +..
T Consensus 8 ~~Ln~~Q~~av~~~---------------------~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kA 66 (721)
T PRK11773 8 DSLNDKQREAVAAP---------------------LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKA 66 (721)
T ss_pred HhcCHHHHHHHhCC---------------------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHH
Confidence 46899999999743 34677888899999999988888777543 2345688888 444
Q ss_pred hHHHHHHHHHhc
Q 006698 145 LLTWEEEFKKWG 156 (635)
Q Consensus 145 ~~qW~~E~~~~~ 156 (635)
...-++-+.+..
T Consensus 67 A~Em~~Rl~~~~ 78 (721)
T PRK11773 67 AAEMRHRIEQLL 78 (721)
T ss_pred HHHHHHHHHHHh
Confidence 455555555543
No 201
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.32 E-value=0.053 Score=55.86 Aligned_cols=55 Identities=16% Similarity=0.077 Sum_probs=34.8
Q ss_pred cCCCEEEEeCCCcCCCcccH---HHHHHHhcc--cCcEEEEecccCCCChhhHHHHHHhh
Q 006698 231 DLPGLFVFDEGHTPRNDDTC---MFKALSRIK--TRRRIILSGTPFQNNFQELENTLSLV 285 (635)
Q Consensus 231 ~~~~~vIvDEaH~~kn~~s~---~~~~l~~l~--~~~~l~LTgTP~~n~~~el~~ll~~l 285 (635)
...|+||||++.+......+ +.+.+.... ....+.|+||--++.+.+++.-...+
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~ 312 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPF 312 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCC
Confidence 35799999999987543222 222222222 24678999998777777776655544
No 202
>PLN03025 replication factor C subunit; Provisional
Probab=96.28 E-value=0.043 Score=55.63 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=21.7
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
...++..++|+|||..|.+++..+.
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999887764
No 203
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.19 E-value=0.038 Score=58.44 Aligned_cols=40 Identities=25% Similarity=0.193 Sum_probs=31.3
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCc
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPR 142 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~ 142 (635)
.+..+|..++|+|||..+-++...+.+.++..+++.+...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~ 169 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 3568999999999999998888887776666566666543
No 204
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.16 E-value=0.026 Score=49.03 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=32.3
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEE 151 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E 151 (635)
+...+|..++|+|||..+..++..+.... ..++++.+......+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~ 48 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQ 48 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHH
Confidence 45789999999999998888876553322 246777776555444433
No 205
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.13 E-value=0.062 Score=53.02 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=17.7
Q ss_pred ceEEeCCCCchHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~ 126 (635)
-++|..+.|+|||..+-.++..
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4789999999999777766543
No 206
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.13 E-value=0.063 Score=47.00 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=21.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
++.+++..++|+|||..+-.++..+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 56799999999999987777775553
No 207
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.05 E-value=0.032 Score=58.70 Aligned_cols=38 Identities=24% Similarity=0.258 Sum_probs=29.2
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA 140 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~ 140 (635)
.+..+|..++|+|||..+-++...+.+..+..+++.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 34678999999999999988888777665555556554
No 208
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.02 E-value=0.033 Score=59.42 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=35.2
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEF 152 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~ 152 (635)
.+..+|..++|+|||..+-++...+.+.++..+++.+....+...+...+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~ 197 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNAL 197 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH
Confidence 35689999999999999988888877766555556665454544443333
No 209
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.00 E-value=0.042 Score=53.11 Aligned_cols=43 Identities=26% Similarity=0.296 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHH
Q 006698 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 73 ~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
+|...|+-+.+.+.+++ ...-++-.++|+|||-+|+++..++.
T Consensus 40 gQe~vV~~L~~a~~~~~-------------lp~~LFyGPpGTGKTStalafar~L~ 82 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRI-------------LPHYLFYGPPGTGKTSTALAFARALN 82 (346)
T ss_pred chHHHHHHHHHHHhhcC-------------CceEEeeCCCCCcHhHHHHHHHHHhc
Confidence 78888888877766532 45679999999999999999998764
No 210
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.88 E-value=0.039 Score=52.84 Aligned_cols=42 Identities=19% Similarity=0.117 Sum_probs=28.4
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLT 147 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~q 147 (635)
.+..+|..+.|+|||..|.++....... +..++.++...+..
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~---~~~~~~i~~~~~~~ 79 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEER---GKSAIYLPLAELAQ 79 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhc---CCcEEEEeHHHHHH
Confidence 5678999999999999998887665432 23345555443333
No 211
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.85 E-value=0.057 Score=57.23 Aligned_cols=50 Identities=14% Similarity=-0.002 Sum_probs=35.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEF 152 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~ 152 (635)
.++.+|..++|+|||..+-++...+....+..+++.+.+..++......+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l 190 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDIL 190 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH
Confidence 45788999999999988888777666556666666666655554444443
No 212
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.81 E-value=0.084 Score=50.81 Aligned_cols=27 Identities=11% Similarity=0.086 Sum_probs=21.5
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
....+|..+.|+|||-.+.++......
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 457899999999999888777765543
No 213
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.80 E-value=1.6 Score=49.91 Aligned_cols=66 Identities=18% Similarity=0.177 Sum_probs=44.5
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCC--CCcEEEeCc-cch
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPR--CRPVIIAPR-SML 145 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~--~~~LIv~P~-~l~ 145 (635)
.|-|-|+++|... .+.+++-...|+|||.+.+.-+..+...... .++|+++-. ...
T Consensus 4 ~Ln~~Q~~av~~~---------------------~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA 62 (726)
T TIGR01073 4 HLNPEQREAVKTT---------------------EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAA 62 (726)
T ss_pred ccCHHHHHHHhCC---------------------CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHH
Confidence 4889999999743 4467888888999999999888887764322 345777763 333
Q ss_pred HHHHHHHHHh
Q 006698 146 LTWEEEFKKW 155 (635)
Q Consensus 146 ~qW~~E~~~~ 155 (635)
..-.+-+.+.
T Consensus 63 ~em~~Rl~~~ 72 (726)
T TIGR01073 63 REMKERVEKL 72 (726)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 214
>CHL00181 cbbX CbbX; Provisional
Probab=95.74 E-value=0.055 Score=53.68 Aligned_cols=29 Identities=34% Similarity=0.465 Sum_probs=23.3
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLH 131 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~ 131 (635)
+...+|..++|+|||..|-+++..+...+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g 87 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLG 87 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 34579999999999999999887665543
No 215
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.72 E-value=0.046 Score=56.02 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=21.8
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
..++..++|+|||..|.+++..+..
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcC
Confidence 6899999999999999998877653
No 216
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.72 E-value=0.047 Score=60.02 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=21.7
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
.+..|+..+.|+|||..+..++..+.
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34569999999999999999887764
No 217
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.68 E-value=0.043 Score=51.03 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=30.3
Q ss_pred eEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHh
Q 006698 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~ 155 (635)
.++..++|.|||-++.-++..+... ..++.+||--.-..-=.++++.|
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~ 51 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTY 51 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHH
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHH
Confidence 5788999999998888777666555 55777777633332233444444
No 218
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.66 E-value=0.026 Score=59.10 Aligned_cols=40 Identities=20% Similarity=0.162 Sum_probs=30.4
Q ss_pred eCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHHHH
Q 006698 109 SHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLTWE 149 (635)
Q Consensus 109 ad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qW~ 149 (635)
-+.+|+|||+++.++|.+++..|-+ ..|+.|- ++++..-.
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr-~flffvnq~nilekt~ 43 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYR-NFLFFVNQANILEKTK 43 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchh-hEEEEecchhHHHHHH
Confidence 3578999999999999988877654 6676666 77776543
No 219
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.65 E-value=0.061 Score=56.50 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.8
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
..|+..+.|+|||..|..++..+.
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 469999999999999999887664
No 220
>PHA02533 17 large terminase protein; Provisional
Probab=95.61 E-value=0.16 Score=54.95 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=37.5
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
-.|.|+|++.+..+.. .+-.++.-.=..|||..+.+++..+.-..+...+++++|
T Consensus 58 f~L~p~Q~~i~~~~~~-------------------~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~ 112 (534)
T PHA02533 58 VQMRDYQKDMLKIMHK-------------------NRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAH 112 (534)
T ss_pred cCCcHHHHHHHHHHhc-------------------CeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 3589999998887632 233466667799999887766544443444556688888
No 221
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.59 E-value=0.24 Score=47.72 Aligned_cols=46 Identities=24% Similarity=0.243 Sum_probs=33.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKK 154 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~ 154 (635)
..+.+|..++|+|||..+.+++..+...+ .+++++ .+..|...+..
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g--~~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRG--KSVLII----TVADIMSAMKD 144 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEE----EHHHHHHHHHH
Confidence 35889999999999999999998776543 344444 24566666654
No 222
>PRK08116 hypothetical protein; Validated
Probab=95.57 E-value=0.077 Score=52.07 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=30.8
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTW 148 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW 148 (635)
+.|.+|..++|+|||..|.+++..+... ..+++++.-..++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~~~~ll~~i 157 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVNFPQLLNRI 157 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHHH
Confidence 4579999999999999999999887665 2344444334444433
No 223
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=95.57 E-value=0.0056 Score=67.93 Aligned_cols=114 Identities=17% Similarity=0.201 Sum_probs=75.0
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccch----HHHHHHHHHhcCCCcccccCCCCCcCcccchh
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSML----LTWEEEFKKWGIDIPFYNLNKPELSGKENNGA 177 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~----~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~ 177 (635)
..+.++.+++|.|||+.+-..+...+...|.+++.+|+| ++++ ..|..-+. .++.++...++....+-..
T Consensus 943 d~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~--~~g~k~ie~tgd~~pd~~~--- 1017 (1230)
T KOG0952|consen 943 DLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDE--LPGIKVIELTGDVTPDVKA--- 1017 (1230)
T ss_pred chhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcc--cCCceeEeccCccCCChhh---
Confidence 457899999999999988777766777888899999999 6666 44554433 2345555544432221000
Q ss_pred hHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhhhhccCCCEEEEeCCCcCCCc
Q 006698 178 VALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND 247 (635)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~ 247 (635)
....+++|||++..-...+...-... ......+|+||.|-++..
T Consensus 1018 -------------------------v~~~~~~ittpek~dgi~Rsw~~r~~-v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1018 -------------------------VREADIVITTPEKWDGISRSWQTRKY-VQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred -------------------------eecCceEEcccccccCccccccchhh-hccccceeecccccccCC
Confidence 13678999999887666553222222 223567999999988653
No 224
>PF13173 AAA_14: AAA domain
Probab=95.56 E-value=0.096 Score=45.04 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=20.4
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
+-.+|..+.|+|||..+..++..+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 4678999999999988888876654
No 225
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.55 E-value=0.046 Score=54.12 Aligned_cols=37 Identities=24% Similarity=0.424 Sum_probs=26.6
Q ss_pred CEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCC
Q 006698 234 GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQ 272 (635)
Q Consensus 234 ~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~ 272 (635)
.+||+|||+++.- .+.-..+.+.-...++.|||-|-|
T Consensus 353 ~FiIIDEaQNLTp--heikTiltR~G~GsKIVl~gd~aQ 389 (436)
T COG1875 353 SFIIIDEAQNLTP--HELKTILTRAGEGSKIVLTGDPAQ 389 (436)
T ss_pred ceEEEehhhccCH--HHHHHHHHhccCCCEEEEcCCHHH
Confidence 5799999999843 234444555566778999999854
No 226
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.50 E-value=0.11 Score=53.98 Aligned_cols=48 Identities=23% Similarity=0.230 Sum_probs=34.2
Q ss_pred ccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 70 L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
=|..|.+.+...+.....| ..+++++|..++|+|||.++-.++..+..
T Consensus 19 gRe~e~~~l~~~l~~~~~~------------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRG------------SRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred CcHHHHHHHHHHHHHHHcC------------CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3677777776665543321 23567999999999999998888876644
No 227
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.49 E-value=0.0091 Score=69.89 Aligned_cols=72 Identities=21% Similarity=0.257 Sum_probs=55.2
Q ss_pred HhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCch--HHHHHHHHHHHHHHhCCCCCcEEEeCccc
Q 006698 67 RKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTG--KTGLTLVFLQAYMKLHPRCRPVIIAPRSM 144 (635)
Q Consensus 67 ~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlG--KT~~ai~~i~~~~~~~~~~~~LIv~P~~l 144 (635)
...+.+||.....-..... ..+..+++..|.| ||..+..+...........+.++++|..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (866)
T COG0553 82 RFILIPHQLDIALEVLNEL-----------------ALRVLIADEVGLGDLKTIEAGAILKELLLRGEIKRVLILVPKTL 144 (866)
T ss_pred ccccCcchhhhhhhhhhhh-----------------hhchhhcccccccccccccccccchHhhhhhhhccceeccchHH
Confidence 4456777776665443322 2248899999999 99998888877777777778899999999
Q ss_pred hHHHHHHHHHh
Q 006698 145 LLTWEEEFKKW 155 (635)
Q Consensus 145 ~~qW~~E~~~~ 155 (635)
..+|..+...+
T Consensus 145 ~~~~~~e~~~~ 155 (866)
T COG0553 145 RAQWVVELLEK 155 (866)
T ss_pred HHHHHHHhhhh
Confidence 99999998765
No 228
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.49 E-value=0.095 Score=53.52 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 74 QREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 74 Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
|.+++..+...+..| ..++..++..+.|+|||..|..++..++.
T Consensus 28 h~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 28 HEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred cHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 445566666655443 22446899999999999999999887765
No 229
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.46 E-value=0.035 Score=61.48 Aligned_cols=68 Identities=22% Similarity=0.293 Sum_probs=53.6
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~ 146 (635)
..|-+.|++||.+++.+ ....++-.++|+|||.++.+++..+.+.+. ++|+++| +..+.
T Consensus 156 ~~ln~~Q~~Av~~~l~~------------------~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~--~VLv~a~sn~Avd 215 (637)
T TIGR00376 156 PNLNESQKEAVSFALSS------------------KDLFLIHGPPGTGKTRTLVELIRQLVKRGL--RVLVTAPSNIAVD 215 (637)
T ss_pred CCCCHHHHHHHHHHhcC------------------CCeEEEEcCCCCCHHHHHHHHHHHHHHcCC--CEEEEcCcHHHHH
Confidence 46889999999987542 347899999999999999988887766544 7899999 55667
Q ss_pred HHHHHHHHh
Q 006698 147 TWEEEFKKW 155 (635)
Q Consensus 147 qW~~E~~~~ 155 (635)
+..+.+...
T Consensus 216 ~l~e~l~~~ 224 (637)
T TIGR00376 216 NLLERLALC 224 (637)
T ss_pred HHHHHHHhC
Confidence 777777653
No 230
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.42 E-value=0.08 Score=58.77 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=50.3
Q ss_pred HhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccch
Q 006698 67 RKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSML 145 (635)
Q Consensus 67 ~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~ 145 (635)
...|-.-|++|+...+.. ..=.++-.-+|+|||-+..+++..+... ++++|+.+= .+.+
T Consensus 667 ~~~LN~dQr~A~~k~L~a------------------edy~LI~GMPGTGKTTtI~~LIkiL~~~--gkkVLLtsyThsAV 726 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAA------------------EDYALILGMPGTGKTTTISLLIKILVAL--GKKVLLTSYTHSAV 726 (1100)
T ss_pred HhhcCHHHHHHHHHHHhc------------------cchheeecCCCCCchhhHHHHHHHHHHc--CCeEEEEehhhHHH
Confidence 348999999999887654 2234555667999998887877766544 346787776 6677
Q ss_pred HHHHHHHHHhc
Q 006698 146 LTWEEEFKKWG 156 (635)
Q Consensus 146 ~qW~~E~~~~~ 156 (635)
.|----+..+.
T Consensus 727 DNILiKL~~~~ 737 (1100)
T KOG1805|consen 727 DNILIKLKGFG 737 (1100)
T ss_pred HHHHHHHhccC
Confidence 88777776653
No 231
>PRK08727 hypothetical protein; Validated
Probab=95.40 E-value=0.11 Score=49.97 Aligned_cols=27 Identities=33% Similarity=0.343 Sum_probs=22.0
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHHHh
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYMKL 130 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~~~ 130 (635)
...+|..++|+|||-.+.++.....+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 458999999999998888887766544
No 232
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.20 E-value=0.11 Score=56.20 Aligned_cols=50 Identities=20% Similarity=0.161 Sum_probs=34.5
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEF 152 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~ 152 (635)
.+..+|..+.|+|||..+-++.....+..+..+++.+.-..++..+...+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al 363 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSI 363 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHH
Confidence 34589999999999999888887766555555666665555555444433
No 233
>PRK14974 cell division protein FtsY; Provisional
Probab=95.15 E-value=0.2 Score=50.68 Aligned_cols=51 Identities=22% Similarity=0.098 Sum_probs=33.0
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCc----cchHHHHHHHHHh
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPR----SMLLTWEEEFKKW 155 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~----~l~~qW~~E~~~~ 155 (635)
+.-.++..++|+|||.++..++..+... ..+++++..- ....||+.-....
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~--g~~V~li~~Dt~R~~a~eqL~~~a~~l 194 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKN--GFSVVIAAGDTFRAGAIEQLEEHAERL 194 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcCcHHHHHHHHHHHHHc
Confidence 3457889999999998877777655433 2356666542 3456776555543
No 234
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.07 E-value=0.15 Score=57.24 Aligned_cols=66 Identities=15% Similarity=0.243 Sum_probs=46.1
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCC--CCCcEEEeC-ccch
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP--RCRPVIIAP-RSML 145 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~--~~~~LIv~P-~~l~ 145 (635)
.|-|-|+++|.+. .+.+++...+|+|||.+.+.-+..++.... ..++|+|+. +...
T Consensus 2 ~Ln~~Q~~av~~~---------------------~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA 60 (672)
T PRK10919 2 RLNPGQQQAVEFV---------------------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAA 60 (672)
T ss_pred CCCHHHHHHHhCC---------------------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHH
Confidence 4778899998753 456788888999999999988888776422 335688888 4444
Q ss_pred HHHHHHHHHh
Q 006698 146 LTWEEEFKKW 155 (635)
Q Consensus 146 ~qW~~E~~~~ 155 (635)
..-.+-+.+.
T Consensus 61 ~em~~Rl~~~ 70 (672)
T PRK10919 61 REMKERVAQT 70 (672)
T ss_pred HHHHHHHHHH
Confidence 4444445544
No 235
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.01 E-value=0.18 Score=52.07 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=21.1
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
+..++..+.|+|||..|-+++..+.
T Consensus 39 h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 39 HAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred eEEEEecCCCCCHHHHHHHHHHHhc
Confidence 3569999999999999999887664
No 236
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.97 E-value=0.27 Score=55.49 Aligned_cols=66 Identities=17% Similarity=0.222 Sum_probs=46.9
Q ss_pred ccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCC--CCCcEEEeC-ccchH
Q 006698 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP--RCRPVIIAP-RSMLL 146 (635)
Q Consensus 70 L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~--~~~~LIv~P-~~l~~ 146 (635)
|-|-|+++|.+- .+.+++-..+|+|||.+.+.-+..++.... ...+|+|+. .....
T Consensus 2 Ln~~Q~~av~~~---------------------~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~ 60 (664)
T TIGR01074 2 LNPQQQEAVEYV---------------------TGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAR 60 (664)
T ss_pred CCHHHHHHHhCC---------------------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHH
Confidence 668899888643 457888888899999999988888775432 233466654 66666
Q ss_pred HHHHHHHHhc
Q 006698 147 TWEEEFKKWG 156 (635)
Q Consensus 147 qW~~E~~~~~ 156 (635)
+-++.+.+..
T Consensus 61 em~~Rl~~~l 70 (664)
T TIGR01074 61 EMKERVAKTL 70 (664)
T ss_pred HHHHHHHHHh
Confidence 7777776643
No 237
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.93 E-value=0.098 Score=56.89 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=21.8
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
.+..|+..+.|+|||..|.+++..+.
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34669999999999999998887764
No 238
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.92 E-value=0.083 Score=56.18 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=21.0
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
+..|+..++|+|||..|-+++..+.
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4569999999999999988887654
No 239
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.92 E-value=0.17 Score=44.22 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=35.5
Q ss_pred EEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccc--cCCeEEEeCCCC
Q 006698 468 VLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLV--GASRVVLLDVVW 523 (635)
Q Consensus 468 ~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~--~a~~vi~~d~~w 523 (635)
...+.|. +..+...+++.|.+... ..||+ ++...+||+|++ .+..||+.-.|+
T Consensus 25 ~i~~e~~-~~~~~~~~l~~f~~~~~-~~iL~-~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 25 LLLVQGE-DGKETGKLLEKYVEACE-NAILL-ATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred eEEEeCC-ChhHHHHHHHHHHHcCC-CEEEE-EccceecceecCCCCeeEEEEEecCC
Confidence 3444443 34457889999986322 23555 566699999998 467888887665
No 240
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.92 E-value=0.2 Score=51.58 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=35.5
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHh
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~ 155 (635)
+.-.+|..++|.|||..++.++..+.+. ..++|+|.-..-..|......++
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs~~qi~~Ra~rl 132 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEESPEQIKLRADRL 132 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcCHHHHHHHHHHc
Confidence 4457899999999999999888766543 24678887654455555444443
No 241
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.92 E-value=0.16 Score=46.86 Aligned_cols=49 Identities=27% Similarity=0.296 Sum_probs=38.6
Q ss_pred eEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhc
Q 006698 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWG 156 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~ 156 (635)
.+++.++|+|||..++.++....+. ..+++++.......+..+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCCHHHHHHHHHHcC
Confidence 4789999999999999998777654 357889988777777777776653
No 242
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.84 E-value=0.13 Score=54.29 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=27.3
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCc
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPR 142 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~ 142 (635)
.++.+|..++|+|||-.+-++...+... ..+++.+...
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~~ 178 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRSE 178 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeHH
Confidence 3578999999999999888888776653 2344544433
No 243
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=94.83 E-value=0.13 Score=44.97 Aligned_cols=53 Identities=13% Similarity=0.412 Sum_probs=33.7
Q ss_pred EEEeCCCCHHHHHHHHHHhcCCCC-CcEEEEEccCC--cccccccc--cCCeEEEeCCCC
Q 006698 469 LYMDGKQDVKKRQSSINVLNDPSS-QARIMLASTKA--CCEGINLV--GASRVVLLDVVW 523 (635)
Q Consensus 469 ~~i~G~~~~~~r~~~i~~F~~~~~-~~~vll~st~~--~~~GlnL~--~a~~vi~~d~~w 523 (635)
..+.+... .+..++++.|+.... .-.||+ ++.. .+||||++ .+..||+.-.|+
T Consensus 23 i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~-~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 23 VFIEGKDS-GETEELLEKYSAACEARGALLL-AVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEECCCC-chHHHHHHHHHHhcCCCCEEEE-EEeCCeeecceecCCCccEEEEEEecCC
Confidence 44455432 355788999985321 113444 3444 89999998 477888887775
No 244
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.83 E-value=0.081 Score=51.40 Aligned_cols=50 Identities=22% Similarity=0.393 Sum_probs=37.2
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHH
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFK 153 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~ 153 (635)
.+.|.++..++|+|||..|+|+...+.+. ..+++++.=+.++.+++..+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~--g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKA--GISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHHHHHHHh
Confidence 37799999999999999999999888733 234566555666666665544
No 245
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.76 E-value=0.21 Score=54.37 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=22.4
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
.+..|+..+.|+|||..+..++..+.-
T Consensus 38 pHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 38 HHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345699999999999999999887754
No 246
>PRK08181 transposase; Validated
Probab=94.73 E-value=0.46 Score=46.48 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=24.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHh
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKL 130 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~ 130 (635)
+.+.+|..++|+|||..+.++.....+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~ 133 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIEN 133 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHc
Confidence 5689999999999999999988776654
No 247
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.72 E-value=0.17 Score=55.12 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=21.2
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
..|+..+.|+|||..|.+++..+.-
T Consensus 37 a~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 37 AYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3589999999999999999877653
No 248
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.71 E-value=0.4 Score=50.40 Aligned_cols=55 Identities=13% Similarity=0.212 Sum_probs=34.2
Q ss_pred CCCEEEEeCCCcCCCcccHHHHHHHhc------ccCcEEEEecccCCCChhhHHHHHHhhhh
Q 006698 232 LPGLFVFDEGHTPRNDDTCMFKALSRI------KTRRRIILSGTPFQNNFQELENTLSLVRQ 287 (635)
Q Consensus 232 ~~~~vIvDEaH~~kn~~s~~~~~l~~l------~~~~~l~LTgTP~~n~~~el~~ll~~l~p 287 (635)
.+|+||||.+-+..... .....+..+ .....++|++|+-.+.+.+++..+..+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~-~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDK-RLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCH-HHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 47999999997654322 222222222 23457889999877777777766665543
No 249
>PRK06893 DNA replication initiation factor; Validated
Probab=94.69 E-value=0.2 Score=48.07 Aligned_cols=27 Identities=19% Similarity=0.120 Sum_probs=22.3
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHHhC
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMKLH 131 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~~~ 131 (635)
..+|..++|+|||-.+.++...+.+.+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~ 67 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQ 67 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 468999999999998888887766553
No 250
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.69 E-value=0.28 Score=52.76 Aligned_cols=37 Identities=19% Similarity=0.106 Sum_probs=26.5
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
..|+..++|+|||..|.+++..+...++...+.-.|+
T Consensus 38 a~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 3499999999999999999877754443333444554
No 251
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.66 E-value=0.51 Score=42.39 Aligned_cols=48 Identities=27% Similarity=0.383 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCC
Q 006698 74 QREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPR 133 (635)
Q Consensus 74 Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~ 133 (635)
|.+.++.+.+.+..+ .-+..-|+..+.|.||+-.|.+++..++-..+.
T Consensus 2 q~~~~~~L~~~~~~~------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~ 49 (162)
T PF13177_consen 2 QEEIIELLKNLIKSG------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPN 49 (162)
T ss_dssp -HHHHHHHHHHHHCT------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-C
T ss_pred cHHHHHHHHHHHHcC------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 566666666655442 124456999999999999999999888765554
No 252
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.66 E-value=0.18 Score=53.95 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
.+..|+..+.|+|||..|-.++..+..
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 457899999999999999999877643
No 253
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.59 E-value=0.26 Score=54.18 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=21.3
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
..|+..+.|+|||..|-.++..+.-
T Consensus 40 AyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 40 AYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhh
Confidence 3589999999999999999877654
No 254
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.58 E-value=0.18 Score=52.23 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=22.8
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
.+..|+..+.|+|||..|.+++..+.-
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 456889999999999999999877643
No 255
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.49 E-value=0.25 Score=45.83 Aligned_cols=26 Identities=38% Similarity=0.487 Sum_probs=22.3
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
-.+.|++.++|+|||..+.+++..++
T Consensus 48 mP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 48 MPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred CCceEeeCCCCCchhhHHHHHHHHHh
Confidence 45789999999999998888887764
No 256
>PRK06921 hypothetical protein; Provisional
Probab=94.48 E-value=0.26 Score=48.26 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=27.8
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA 140 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~ 140 (635)
+.+.+|..++|+|||..+.+++..+.+.. ...++.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEE
Confidence 56899999999999999999988776542 22344444
No 257
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.47 E-value=0.28 Score=46.59 Aligned_cols=39 Identities=28% Similarity=0.290 Sum_probs=28.5
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
.+..+|..+.|+|||-..-++..++.+..+..+++.+..
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 345799999999999877777777777667666655543
No 258
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.43 E-value=0.37 Score=54.68 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=42.9
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLL 146 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~ 146 (635)
..|-+-|++|+..+... .+-++|....|+|||.++-+++..+... ..+++.++|.....
T Consensus 351 ~~Ls~~Q~~Av~~i~~s------------------~~~~il~G~aGTGKTtll~~i~~~~~~~--g~~V~~~ApTg~Aa 409 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGS------------------GDIAVVVGRAGTGKSTMLKAAREAWEAA--GYRVIGAALSGKAA 409 (744)
T ss_pred CCCCHHHHHHHHHHhcC------------------CCEEEEEecCCCCHHHHHHHHHHHHHhC--CCeEEEEeCcHHHH
Confidence 45889999999887531 3467999999999998777766544333 34678889976554
No 259
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.39 E-value=0.42 Score=53.50 Aligned_cols=47 Identities=23% Similarity=0.233 Sum_probs=32.0
Q ss_pred ccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceE-EeCCCCchHHHHHHHHHHHHH
Q 006698 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCI-ISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 70 L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~i-Lad~~GlGKT~~ai~~i~~~~ 128 (635)
=|.-|.+.+...+.....| ..++++| |...+|+|||.++-.++..+.
T Consensus 759 hREeEIeeLasfL~paIkg------------sgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQ------------SGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhc------------CCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4666777776555543321 2244564 999999999999988886654
No 260
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=94.36 E-value=0.32 Score=54.80 Aligned_cols=69 Identities=20% Similarity=0.109 Sum_probs=40.8
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~ 146 (635)
-+.||-|.+-+..+.+.+.++- ...++-+++=.+||+|||+--+.-+..+.. ...++++|-+. ..|.+
T Consensus 24 ~e~R~~Q~~M~~~V~~al~~~~----------~~~~~~lviEAgTGtGKTlaYLlPai~~A~-~~~k~vVIST~T~~LQe 92 (697)
T PRK11747 24 FIPRAGQRQMIAEVAKTLAGEY----------LKDGRILVIEAGTGVGKTLSYLLAGIPIAR-AEKKKLVISTATVALQE 92 (697)
T ss_pred CCcCHHHHHHHHHHHHHHhccc----------ccccceEEEECCCCcchhHHHHHHHHHHHH-HcCCeEEEEcCCHHHHH
Confidence 3689999998888887765310 001245677789999999766554433222 22334444444 33334
Q ss_pred H
Q 006698 147 T 147 (635)
Q Consensus 147 q 147 (635)
|
T Consensus 93 Q 93 (697)
T PRK11747 93 Q 93 (697)
T ss_pred H
Confidence 4
No 261
>PRK05642 DNA replication initiation factor; Validated
Probab=94.32 E-value=0.27 Score=47.31 Aligned_cols=35 Identities=11% Similarity=0.064 Sum_probs=23.9
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA 140 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~ 140 (635)
+..+|..+.|+|||-.+-++..++... ..+++++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEee
Confidence 567899999999998877766555432 23445444
No 262
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.26 E-value=0.19 Score=53.65 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=22.9
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHHH
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
..++|++|..++|+|||..+-+++..+
T Consensus 214 ~~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred CCCcceEEECCCCCcHHHHHHHHHHhh
Confidence 446799999999999999888887655
No 263
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.20 E-value=0.25 Score=55.67 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=20.5
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
..|+..++|+|||..|-.++..+.
T Consensus 40 AyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 40 AYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcc
Confidence 348999999999999999887664
No 264
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.19 E-value=0.33 Score=51.61 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=21.9
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
.+..|+..+.|+|||..|..++..+.
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~Ln 60 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLN 60 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHc
Confidence 45789999999999999988876654
No 265
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.17 E-value=0.29 Score=56.57 Aligned_cols=58 Identities=12% Similarity=0.029 Sum_probs=40.1
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLL 146 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~ 146 (635)
.|-+-|++++..++.. .+-++|....|+|||.+.-++. ...+.. ..+++.++|.....
T Consensus 346 ~Ls~eQr~Av~~il~s------------------~~v~vv~G~AGTGKTT~l~~~~-~~~e~~-G~~V~~~ApTGkAA 403 (988)
T PRK13889 346 VLSGEQADALAHVTDG------------------RDLGVVVGYAGTGKSAMLGVAR-EAWEAA-GYEVRGAALSGIAA 403 (988)
T ss_pred CCCHHHHHHHHHHhcC------------------CCeEEEEeCCCCCHHHHHHHHH-HHHHHc-CCeEEEecCcHHHH
Confidence 5899999999877531 2357899999999997754444 333332 34678888976554
No 266
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.06 E-value=0.58 Score=47.86 Aligned_cols=46 Identities=11% Similarity=0.070 Sum_probs=31.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-c---cchHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-R---SMLLTWEE 150 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~---~l~~qW~~ 150 (635)
++...|..+.|+|||.++..++..+... ..++.++.- . ..+.||..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~--GkkVglI~aDt~RiaAvEQLk~ 290 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQD 290 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHH
Confidence 4567899999999998888877665433 345665554 2 34566664
No 267
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.01 E-value=0.68 Score=46.88 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=20.3
Q ss_pred CceEEeCCCCchHHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
...++..+.|+|||..+-+++..+
T Consensus 39 ~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999998888887665
No 268
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.99 E-value=0.67 Score=46.85 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=25.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLH 131 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~ 131 (635)
..+.+|..++|+|||..+.+++..+...+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g 211 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRG 211 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 47899999999999999999998887643
No 269
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=93.94 E-value=0.35 Score=48.98 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=36.3
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL 130 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~ 130 (635)
.+||+|....+.+... + .-++.-++..+.|+|||..|.+++..++-.
T Consensus 3 ~~yPWl~~~~~~~~~~--~-------------r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 3 EIYPWQQSLWQQLAGR--G-------------RHPHAYLLHGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred cCCCCcHHHHHHHHHC--C-------------CcceeeeeECCCCCCHHHHHHHHHHHHcCC
Confidence 3689999888877654 1 124567899999999999999999887643
No 270
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.93 E-value=0.49 Score=47.60 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=38.1
Q ss_pred ccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC
Q 006698 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131 (635)
Q Consensus 70 L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~ 131 (635)
+||+|...-..+.+.+..| .-++.-++..+.|+||+..|.+++..++-..
T Consensus 3 ~yPW~~~~~~~l~~~~~~~------------rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQG------------LGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCcchHHHHHHHHHHHHcC------------CcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 5788888877777766543 1245678999999999999999998776543
No 271
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.90 E-value=0.45 Score=52.18 Aligned_cols=44 Identities=11% Similarity=0.148 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 74 QREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 74 Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
|...+..+.+.+..+ .-.+..|+..+.|+|||..|..++..+.-
T Consensus 21 Qe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 21 QEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred cHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 666666665554432 11334599999999999999999877754
No 272
>PRK04195 replication factor C large subunit; Provisional
Probab=93.85 E-value=0.64 Score=50.08 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=21.2
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
.+.++|..++|+|||..|-+++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999998888877554
No 273
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.26 Score=53.42 Aligned_cols=76 Identities=22% Similarity=0.214 Sum_probs=52.7
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLT 147 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~q 147 (635)
.......++++.|.+.+... .........+|.||+.++|+|||+.|-+++... ..+.+-|-...++..
T Consensus 248 ~~~k~~l~e~v~~~~~~~e~-------~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~-----~~~fi~v~~~~l~sk 315 (494)
T COG0464 248 EEAKEELKEAIETPLKRPEL-------FRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES-----RSRFISVKGSELLSK 315 (494)
T ss_pred HHHHHHHHHHHHhHhhChHH-------HHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC-----CCeEEEeeCHHHhcc
Confidence 45677888888888765431 000122446699999999999999999888532 334443333499999
Q ss_pred HHHHHHHh
Q 006698 148 WEEEFKKW 155 (635)
Q Consensus 148 W~~E~~~~ 155 (635)
|.-|.++.
T Consensus 316 ~vGesek~ 323 (494)
T COG0464 316 WVGESEKN 323 (494)
T ss_pred ccchHHHH
Confidence 99998874
No 274
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.81 E-value=0.68 Score=46.50 Aligned_cols=52 Identities=19% Similarity=0.357 Sum_probs=41.0
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~ 131 (635)
..+||+|....+.+...+..| .-++..++..+.|+||+..|.+++..++-..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAG------------RLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred ccccccHHHHHHHHHHHHHcC------------CcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 358999999999887776543 2245688999999999999999998876543
No 275
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=0.11 Score=51.89 Aligned_cols=47 Identities=23% Similarity=0.342 Sum_probs=36.2
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHHHHHHHHHh
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLTWEEEFKKW 155 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qW~~E~~~~ 155 (635)
=+|+++..++|+|||+.|=|++.+- +.+.+=+. ..|...|.-|-+|.
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc------~tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATEC------GTTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhh------cCeEEEechhhhhhhhccchHHH
Confidence 4689999999999999998887542 24455555 66779999887774
No 276
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.72 E-value=0.6 Score=47.83 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=29.7
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCcc
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRS 143 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~ 143 (635)
.++-.+|..++|+|||.++..++..+.......++.+|+...
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~ 177 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDS 177 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 466789999999999999888887654433334566665533
No 277
>PRK12377 putative replication protein; Provisional
Probab=93.71 E-value=0.61 Score=45.03 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=30.6
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTW 148 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW 148 (635)
..+.+|..++|+|||..|.+++..+.+.+ .+++++.-..++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g--~~v~~i~~~~l~~~l 144 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKG--RSVIVVTVPDVMSRL 144 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC--CCeEEEEHHHHHHHH
Confidence 45789999999999999999998876543 234444334444433
No 278
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.67 E-value=0.62 Score=47.17 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=17.2
Q ss_pred ceEE-eCCCCchHHHHHHHHHHH
Q 006698 105 GCII-SHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 105 g~iL-ad~~GlGKT~~ai~~i~~ 126 (635)
+.+| ..+.|+|||..+-+++..
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHHH
Confidence 4555 899999999888777654
No 279
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.66 E-value=0.41 Score=50.07 Aligned_cols=27 Identities=41% Similarity=0.490 Sum_probs=22.4
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
.+..|+..+.|+|||..|.+++..+.-
T Consensus 38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 38 GHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345789999999999999999877643
No 280
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.65 E-value=0.6 Score=47.21 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=19.1
Q ss_pred CCCceEEeCCCCchHHHHHHHHHH
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~ 125 (635)
.-...||-.++|+|||-.|-.+..
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~ 70 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAG 70 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHH
Confidence 356889999999999977666553
No 281
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.63 E-value=0.6 Score=49.51 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=36.5
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHh
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~ 155 (635)
+.-.+|..++|+|||..++.++....+. ..++|++.-.....|......++
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees~~qi~~ra~rl 130 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEESASQIKLRAERL 130 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccccHHHHHHHHHHc
Confidence 4456899999999999999888766533 35778888755556665555544
No 282
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.63 E-value=0.25 Score=56.19 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.6
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
+..|+..+.|+|||..|..++..+.
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3468999999999999999987765
No 283
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.58 E-value=0.38 Score=52.78 Aligned_cols=46 Identities=15% Similarity=0.135 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh
Q 006698 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL 130 (635)
Q Consensus 73 ~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~ 130 (635)
.|...++.+.+.+..| .-.+..|+..+.|+|||..|..++..+.-.
T Consensus 28 Gq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 28 GQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred CcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 4666666665554432 124578999999999999999998776543
No 284
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.57 E-value=0.14 Score=43.96 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=24.5
Q ss_pred EEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHH
Q 006698 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLT 147 (635)
Q Consensus 107 iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~q 147 (635)
+|..++|+|||..+-.++..+ ..+++.+....+...
T Consensus 2 ll~G~~G~GKT~l~~~la~~l-----~~~~~~i~~~~~~~~ 37 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL-----GFPFIEIDGSELISS 37 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT-----TSEEEEEETTHHHTS
T ss_pred EEECcCCCCeeHHHHHHHhhc-----ccccccccccccccc
Confidence 678899999998888877554 223455555555533
No 285
>PRK09183 transposase/IS protein; Provisional
Probab=93.49 E-value=0.5 Score=46.18 Aligned_cols=41 Identities=15% Similarity=0.245 Sum_probs=28.3
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccch
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSML 145 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~ 145 (635)
+.+.+|..++|+|||..+.++.......+ .+++++....++
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G--~~v~~~~~~~l~ 142 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAG--IKVRFTTAADLL 142 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEeHHHHH
Confidence 56899999999999999988876554432 345555433333
No 286
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.41 E-value=0.83 Score=45.26 Aligned_cols=127 Identities=14% Similarity=0.187 Sum_probs=72.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHh
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 182 (635)
+.-.++..-.|+|||-+..-++..+.+. ..++|+.+=-.-..-=.++++.|...+.+.++.+. .|.+...
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~--g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~--~G~DpAa------ 208 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQ--GKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGK--EGADPAA------ 208 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHC--CCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccC--CCCCcHH------
Confidence 4456788999999996665555555443 33566666555445555566666544434343331 2332221
Q ss_pred hhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhc----
Q 006698 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRI---- 258 (635)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l---- 258 (635)
+-|+.++ .-...++|+|++|=|=|+-|.. .+..-|..+
T Consensus 209 ----------------------------VafDAi~---------~Akar~~DvvliDTAGRLhnk~-nLM~EL~KI~rV~ 250 (340)
T COG0552 209 ----------------------------VAFDAIQ---------AAKARGIDVVLIDTAGRLHNKK-NLMDELKKIVRVI 250 (340)
T ss_pred ----------------------------HHHHHHH---------HHHHcCCCEEEEeCcccccCch-hHHHHHHHHHHHh
Confidence 1233332 2334568999999999998753 244444433
Q ss_pred -----ccCcEEEE--ecccCCCChhh
Q 006698 259 -----KTRRRIIL--SGTPFQNNFQE 277 (635)
Q Consensus 259 -----~~~~~l~L--TgTP~~n~~~e 277 (635)
.++|.++| =||-=||.+.-
T Consensus 251 ~k~~~~ap~e~llvlDAttGqnal~Q 276 (340)
T COG0552 251 KKDDPDAPHEILLVLDATTGQNALSQ 276 (340)
T ss_pred ccccCCCCceEEEEEEcccChhHHHH
Confidence 33454444 48877776653
No 287
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.39 E-value=0.43 Score=54.87 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHH
Q 006698 74 QREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 74 Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
|..-++.+++.+.+ ....+.||..++|+|||..+=.++..+
T Consensus 192 r~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 192 RDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 66667777765443 235689999999999998887766544
No 288
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=93.31 E-value=0.6 Score=48.01 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC
Q 006698 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131 (635)
Q Consensus 73 ~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~ 131 (635)
-|.+++..+.+.+..| .-+..-|+..+.|+|||..|.+++..++-..
T Consensus 23 Gq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 23 GHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred ChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 3666666666655443 1245689999999999999999998887543
No 289
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.30 E-value=0.48 Score=51.04 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=21.2
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
+..|+..+.|+|||..|..++..+.
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 39 HAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3458999999999999999887764
No 290
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.22 E-value=1.5 Score=44.21 Aligned_cols=50 Identities=18% Similarity=0.020 Sum_probs=33.3
Q ss_pred hhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHH
Q 006698 228 ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS 283 (635)
Q Consensus 228 ~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~ 283 (635)
.+...+|+||+.|.- +...+.++..+.+.+.-.+ +|-..|++.+...-+.
T Consensus 215 aLR~~PD~IivGEiR-----~~Ea~~~l~A~~tGh~G~~-tTiHa~s~~~ai~Rl~ 264 (319)
T PRK13894 215 TLRMRPDRILVGEVR-----GPEALDLLMAWNTGHEGGA-ATLHANNAKAGLDRLK 264 (319)
T ss_pred HhcCCCCEEEEeccC-----CHHHHHHHHHHHcCCCceE-EEECCCCHHHHHHHHH
Confidence 455679999999974 2234556666666654333 6778888888665443
No 291
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.20 E-value=0.31 Score=53.18 Aligned_cols=169 Identities=15% Similarity=0.161 Sum_probs=98.1
Q ss_pred hHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-cc
Q 006698 65 DVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RS 143 (635)
Q Consensus 65 ~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~ 143 (635)
.......|||++-.+.+-. .....+.+.-..-+|||.+++.++.......| ++.|++.| ..
T Consensus 12 ~w~~~~~Py~~eimd~~~~-----------------~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P-~~~l~v~Pt~~ 73 (557)
T PF05876_consen 12 PWRTDRTPYLREIMDALSD-----------------PSVREVVVMKSAQVGKTELLLNWIGYSIDQDP-GPMLYVQPTDD 73 (557)
T ss_pred CCCCCCChhHHHHHHhcCC-----------------cCccEEEEEEcchhhHhHHHHhhceEEEEeCC-CCEEEEEEcHH
Confidence 3456788999998887732 22568889999999999988888766655555 68899999 56
Q ss_pred chHHHHHH-HHHhcCCCcccc--cCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhh
Q 006698 144 MLLTWEEE-FKKWGIDIPFYN--LNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV 220 (635)
Q Consensus 144 l~~qW~~E-~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~ 220 (635)
....|..+ |....-..+... +.... .+.... ... .+. + .+..+.++...+
T Consensus 74 ~a~~~~~~rl~Pmi~~sp~l~~~~~~~~--~~~~~~-------------t~~----~k~--f-~gg~l~~~ga~S----- 126 (557)
T PF05876_consen 74 AAKDFSKERLDPMIRASPVLRRKLSPSK--SRDSGN-------------TIL----YKR--F-PGGFLYLVGANS----- 126 (557)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHhCchh--hcccCC-------------chh----hee--c-CCCEEEEEeCCC-----
Confidence 66777644 444322222211 00000 000000 000 000 0 123344444422
Q ss_pred cchhhhhhhccCCCEEEEeCCCcC----CCcccHHHHHHHhc---ccCcEEEEecccCCCChhhHHHHH
Q 006698 221 SGDELSGILLDLPGLFVFDEGHTP----RNDDTCMFKALSRI---KTRRRIILSGTPFQNNFQELENTL 282 (635)
Q Consensus 221 ~~~~~~~~~~~~~~~vIvDEaH~~----kn~~s~~~~~l~~l---~~~~~l~LTgTP~~n~~~el~~ll 282 (635)
...+.....+++++||...+ ++.......+..+. ....++++..||.......+..+.
T Consensus 127 ----~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~~ 191 (557)
T PF05876_consen 127 ----PSNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERLY 191 (557)
T ss_pred ----CcccccCCcCEEEEechhhccccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHHH
Confidence 22233445689999999987 33444455444443 467899999999876544444433
No 292
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=93.19 E-value=0.06 Score=49.17 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=25.4
Q ss_pred cCCCeEEeeHHHHHHhhcchhhhhhhccCCCEEEEeCCCcCCC
Q 006698 204 MGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRN 246 (635)
Q Consensus 204 ~~~~vvi~ty~~~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn 246 (635)
...+|||++|..+-.......... +...-.+|||||||++-+
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~-~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFG-IDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT---CCCEEEEETTGGGCGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhcc-ccccCcEEEEecccchHH
Confidence 568999999998765322111110 112336899999999843
No 293
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=93.12 E-value=1.6 Score=45.55 Aligned_cols=125 Identities=10% Similarity=0.059 Sum_probs=88.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCc-ccccccccC
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKAC-CEGINLVGA 513 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~-~~GlnL~~a 513 (635)
...++|||..+=-..-.|..+|.+. ++.++.++--++..+-.++-..|.. |+..+||.+-+.- =.=..+.++
T Consensus 299 ~~~~~LIfIPSYfDfVRlRN~lk~~-----~~sF~~i~EYts~~~isRAR~~F~~--G~~~iLL~TER~HFfrRy~irGi 371 (442)
T PF06862_consen 299 KMSGTLIFIPSYFDFVRLRNYLKKE-----NISFVQISEYTSNSDISRARSQFFH--GRKPILLYTERFHFFRRYRIRGI 371 (442)
T ss_pred CCCcEEEEecchhhhHHHHHHHHhc-----CCeEEEecccCCHHHHHHHHHHHHc--CCceEEEEEhHHhhhhhceecCC
Confidence 5567888876544445578888865 9999999999999999999999998 6789999865542 123456789
Q ss_pred CeEEEeCCCCChhhHHhhhhhhhhcCC----cceEEEEEEEeCCChHHHHHHHHHHhhh
Q 006698 514 SRVVLLDVVWNPFVERQAISRAYRLGQ----KRVVHVYHLITSETLEWDKLRRQARKVW 568 (635)
Q Consensus 514 ~~vi~~d~~wnp~~~~Qa~gR~~R~GQ----~~~V~vy~li~~~tiEe~i~~~~~~K~~ 568 (635)
.+||||.||-+|.-|...+.-+..-.+ .....|.-|.++ .|..-+++..--.+
T Consensus 372 ~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk--~D~~~LErIVGt~r 428 (442)
T PF06862_consen 372 RHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK--YDALRLERIVGTER 428 (442)
T ss_pred cEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH--hHHHHHHHHhCHHH
Confidence 999999999999999888866655433 224455555553 34444444443333
No 294
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=93.11 E-value=1.8 Score=42.67 Aligned_cols=25 Identities=20% Similarity=0.135 Sum_probs=19.0
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHH
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~ 125 (635)
..-.+.+|..+.|.|||..+=-|..
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~ 83 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRR 83 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHH
Confidence 3456889999999999976555543
No 295
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.09 E-value=0.63 Score=44.58 Aligned_cols=52 Identities=12% Similarity=0.150 Sum_probs=36.6
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHh
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~ 155 (635)
.+.-.++..++|+|||..++.++....+.+ .+++.++......+-.+.+..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e~~~~~~~~~~~~~ 74 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQLTTTEFIKQMMSL 74 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCCCCHHHHHHHHHHh
Confidence 355789999999999999988887765543 4678888654444444444444
No 296
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.02 E-value=1.8 Score=45.32 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=24.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLH 131 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~ 131 (635)
+.+++|..++|+|||..+-.++..+....
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 56799999999999999888887765544
No 297
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=93.02 E-value=0.18 Score=50.91 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=42.8
Q ss_pred ccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCC--CCCcEEEeCccc-hH
Q 006698 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP--RCRPVIIAPRSM-LL 146 (635)
Q Consensus 70 L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~--~~~~LIv~P~~l-~~ 146 (635)
|-+-|.++|.+. .+.+++-...|+|||.+++.-+..++..+. ..+.|+|+++.. ..
T Consensus 1 l~~eQ~~~i~~~---------------------~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~ 59 (315)
T PF00580_consen 1 LTDEQRRIIRST---------------------EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQ 59 (315)
T ss_dssp S-HHHHHHHHS----------------------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHH
T ss_pred CCHHHHHHHhCC---------------------CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHH
Confidence 346788888763 457788888999999999888877776653 345699998544 33
Q ss_pred HHHHHHHH
Q 006698 147 TWEEEFKK 154 (635)
Q Consensus 147 qW~~E~~~ 154 (635)
.-...+..
T Consensus 60 e~~~ri~~ 67 (315)
T PF00580_consen 60 EMRERIRE 67 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 298
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.00 E-value=0.55 Score=47.66 Aligned_cols=50 Identities=24% Similarity=0.407 Sum_probs=39.4
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL 130 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~ 130 (635)
.+||+|...-+.+.+.+..| .-+..-+++.+.|+||+..|.+++..++-.
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~------------rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~ 51 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAG------------RGHHALLIQALPGMGDDALIYALSRWLMCQ 51 (334)
T ss_pred CCCCCChHHHHHHHHHHHcC------------CcceEEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 47899998888887776543 225567899999999999999999877643
No 299
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=92.98 E-value=0.74 Score=51.87 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=74.5
Q ss_pred cCccccchHHHHHH-HHHhc-CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCC
Q 006698 416 LDPEAGIKTRFLLI-LLELS-TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQ 493 (635)
Q Consensus 416 ~~~~~s~K~~~l~~-~l~~~-~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~ 493 (635)
..+..|+|.....- ++... .|.+++|.+.....+.-+.+.+.+.+... |+++..++|+++..+|...++...+ |+
T Consensus 288 ~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~-~i~v~ll~G~~~~~~r~~~~~~l~~--g~ 364 (681)
T PRK10917 288 QGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPL-GIRVALLTGSLKGKERREILEAIAS--GE 364 (681)
T ss_pred ECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhc-CcEEEEEcCCCCHHHHHHHHHHHhC--CC
Confidence 34556788765433 33322 78899999999887776666666554322 7899999999999999999999987 55
Q ss_pred cEEEEEccCCcccccccccCCeEEEeCCC
Q 006698 494 ARIMLASTKACCEGINLVGASRVVLLDVV 522 (635)
Q Consensus 494 ~~vll~st~~~~~GlnL~~a~~vi~~d~~ 522 (635)
+.|++++.......+.+.....||+=+.+
T Consensus 365 ~~IvVgT~~ll~~~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 365 ADIVIGTHALIQDDVEFHNLGLVIIDEQH 393 (681)
T ss_pred CCEEEchHHHhcccchhcccceEEEechh
Confidence 77888765556666777777777664433
No 300
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=92.85 E-value=0.59 Score=48.14 Aligned_cols=31 Identities=26% Similarity=0.169 Sum_probs=23.5
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPR 133 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~ 133 (635)
.+-.+|..++|+|||-.+=|+.....+.++.
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~ 143 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPN 143 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCC
Confidence 5678999999999997666666666655554
No 301
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=92.82 E-value=1.3 Score=42.12 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=30.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccch------HHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSML------LTWEEEFK 153 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~------~qW~~E~~ 153 (635)
.+-+.+..++|+|||+..=+++..+ . ....++|+.|+.++ .-|..++.
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~-~--~d~~~~v~i~~~~~s~~~~~~ai~~~l~ 104 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASL-N--EDQVAVVVIDKPTLSDATLLEAIVADLE 104 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhc-C--CCceEEEEecCcchhHHHHHHHHHHHhc
Confidence 4467889999999998877444332 1 22234567787665 34555544
No 302
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=92.78 E-value=0.33 Score=50.51 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=21.9
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHH
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
..++|++|..++|+|||..|=+++..
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999988777643
No 303
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.75 E-value=0.59 Score=50.55 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.3
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
+..|+..+.|+|||..|..++..+.
T Consensus 39 ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 39 HAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3568999999999999999987664
No 304
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.73 E-value=0.83 Score=48.15 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=19.6
Q ss_pred CCceEEeCCCCchHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
....+|..++|+|||..|-++...
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999888777643
No 305
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.43 E-value=0.72 Score=46.91 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh
Q 006698 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL 130 (635)
Q Consensus 72 p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~ 130 (635)
-.|...+..+.+.+..| .-++.-|+..+.|.|||..|..++..+.-.
T Consensus 9 ~~q~~~~~~L~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~ 55 (329)
T PRK08058 9 ALQPVVVKMLQNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLFCL 55 (329)
T ss_pred hhHHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 34666666665554432 123455999999999999999998776543
No 306
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.40 E-value=0.65 Score=53.59 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHH
Q 006698 74 QREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 74 Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
|..-++.+++.+.+ ...++.||..++|+|||..+-+++...
T Consensus 183 r~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 183 RDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 45556777665443 235689999999999999888777554
No 307
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=92.37 E-value=0.83 Score=40.69 Aligned_cols=34 Identities=21% Similarity=0.249 Sum_probs=24.3
Q ss_pred eEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
.+|..++|+|||..+..++..... ...+++++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~ 35 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDI 35 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEEC
Confidence 367888999999999888766544 2345566555
No 308
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.33 E-value=0.51 Score=53.83 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=31.8
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHH
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEE 151 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E 151 (635)
...+|++|..++|+|||..|-+++... ..+.+.|-++.++..|..|
T Consensus 485 ~~~~giLL~GppGtGKT~lakalA~e~-----~~~fi~v~~~~l~~~~vGe 530 (733)
T TIGR01243 485 RPPKGVLLFGPPGTGKTLLAKAVATES-----GANFIAVRGPEILSKWVGE 530 (733)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhc-----CCCEEEEehHHHhhcccCc
Confidence 346789999999999999988887543 2344555556565555443
No 309
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=92.32 E-value=0.21 Score=52.00 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=22.4
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHHH
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
..++|++|..++|+|||..|-+++...
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHh
Confidence 446799999999999999988877543
No 310
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.31 E-value=1.2 Score=49.36 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=22.8
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
....|+..+.|+|||..|.+++..+..
T Consensus 38 ~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 38 APAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhcC
Confidence 346799999999999999999977754
No 311
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.30 E-value=0.94 Score=48.28 Aligned_cols=50 Identities=20% Similarity=0.242 Sum_probs=36.9
Q ss_pred CCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHHHHHHHHHh
Q 006698 100 TGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLTWEEEFKKW 155 (635)
Q Consensus 100 ~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qW~~E~~~~ 155 (635)
...+.|++|+.++|.|||+.|=|++.+- +--.|-+- +-|+..|.-|-++.
T Consensus 542 i~~PsGvLL~GPPGCGKTLlAKAVANEa------g~NFisVKGPELlNkYVGESErA 592 (802)
T KOG0733|consen 542 IDAPSGVLLCGPPGCGKTLLAKAVANEA------GANFISVKGPELLNKYVGESERA 592 (802)
T ss_pred CCCCCceEEeCCCCccHHHHHHHHhhhc------cCceEeecCHHHHHHHhhhHHHH
Confidence 3457899999999999999998887432 22234344 78888888887663
No 312
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.26 E-value=1.1 Score=44.90 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=28.0
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEE
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVII 139 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv 139 (635)
.++|.+|..++|+|||..+.|++..+.+.+ .+++++
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g--~~v~~~ 190 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKG--VSSTLL 190 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcC--CCEEEE
Confidence 356899999999999999999998877543 234444
No 313
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.14 E-value=1.1 Score=50.91 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=22.3
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
..+.||..++|+|||..+-+++..+..
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 568999999999999998887765543
No 314
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.07 E-value=0.62 Score=44.98 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=36.7
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHHHHHHHHHh
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLTWEEEFKKW 155 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qW~~E~~~~ 155 (635)
-+|.+|..++|+||++.|=+++.. ...+.+-+. .-|+..|.-|-++.
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATE------AnSTFFSvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATE------ANSTFFSVSSSDLVSKWMGESEKL 213 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhh------cCCceEEeehHHHHHHHhccHHHH
Confidence 458899999999999999888743 234555555 77999999998875
No 315
>PRK08760 replicative DNA helicase; Provisional
Probab=92.01 E-value=1.2 Score=47.59 Aligned_cols=58 Identities=12% Similarity=0.019 Sum_probs=42.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhcCCCcc
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~~~~~v 161 (635)
+.=.+||..+|+|||..++.++...... ...+++++..-.-..|+...+.....+++.
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~-~g~~V~~fSlEMs~~ql~~Rl~a~~s~i~~ 286 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIK-SKKGVAVFSMEMSASQLAMRLISSNGRINA 286 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHh-cCCceEEEeccCCHHHHHHHHHHhhCCCcH
Confidence 4446999999999999999888665432 234678888877778888877665444443
No 316
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=91.99 E-value=0.66 Score=51.54 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=21.6
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
.+..|+..+.|+|||..|-+++..+.
T Consensus 40 ~HAYLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 40 SHAYLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 34568999999999999999887664
No 317
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=91.98 E-value=0.8 Score=43.81 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=22.2
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
....+|..+.|+|||..+.++......
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~ 68 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASY 68 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 457899999999999888888765543
No 318
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=91.96 E-value=3.6 Score=45.57 Aligned_cols=26 Identities=15% Similarity=0.367 Sum_probs=21.9
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
.+..|+..+.|+|||..|.+++..+.
T Consensus 38 ~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 38 HHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 44679999999999999999887654
No 319
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=91.95 E-value=0.9 Score=41.35 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=24.5
Q ss_pred EEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCc
Q 006698 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPR 142 (635)
Q Consensus 107 iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~ 142 (635)
++..+|++|||...+..+..+... ..+++++-|.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~--~~~v~~~kp~ 38 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIA--GKKVLVFKPA 38 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEEES
T ss_pred EEECCcCChhHHHHHHHHHHHHhC--CCeEEEEEec
Confidence 567899999999888887665443 3467777773
No 320
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=91.93 E-value=1.3 Score=44.54 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=39.4
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~ 131 (635)
.+||+|...-+.+.+.+..+ .-+..-++..+.|+||+..|..++..++-..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~------------rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAG------------RIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHHcC------------CcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 47899998888877665442 2255789999999999999999998776543
No 321
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=91.88 E-value=1 Score=48.44 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.0
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
..|+..+.|+|||..|-+++..+..
T Consensus 38 ayLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 38 AYLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhcC
Confidence 4489999999999999998877653
No 322
>PRK09165 replicative DNA helicase; Provisional
Probab=91.87 E-value=1.2 Score=48.04 Aligned_cols=59 Identities=14% Similarity=-0.013 Sum_probs=39.8
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhC-------------CCCCcEEEeCccchHHHHHHHHHhcCCCcc
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLH-------------PRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~-------------~~~~~LIv~P~~l~~qW~~E~~~~~~~~~v 161 (635)
+.=++||..+|+|||..++.++....... ...+++++..---..+...-+.....+++.
T Consensus 217 g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la~~s~v~~ 288 (497)
T PRK09165 217 SDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSEISS 288 (497)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHHHhcCCCH
Confidence 33479999999999999988876654332 134678888766666766666544434433
No 323
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=91.85 E-value=0.33 Score=45.43 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=18.0
Q ss_pred CCceEEeCCCCchHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
-..+|+..++|+|||-.|-.++..
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCccchhHHHHHHHhc
Confidence 347899999999999776666543
No 324
>CHL00095 clpC Clp protease ATP binding subunit
Probab=91.79 E-value=0.89 Score=52.46 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=21.7
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
.++.||..++|+|||..+-+++..+.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999998877775543
No 325
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=91.70 E-value=0.22 Score=45.55 Aligned_cols=45 Identities=27% Similarity=0.426 Sum_probs=30.8
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFK 153 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~ 153 (635)
+.|.+|..++|+|||..|.+++..+...+ .+++++.-. .+.++++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g--~~v~f~~~~----~L~~~l~ 91 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKG--YSVLFITAS----DLLDELK 91 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEHH----HHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCC--cceeEeecC----ceecccc
Confidence 67899999999999999999998877633 355665433 3444554
No 326
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=91.69 E-value=0.9 Score=47.76 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=28.0
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
.+.-.+++..+|+|||.++..++..+.+. ..++++|+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~--g~kV~lV~~ 131 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK--GLKVGLVAA 131 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEecC
Confidence 35568899999999999988888666543 246666654
No 327
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.66 E-value=0.73 Score=50.02 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=21.1
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
+..|+..+.|+|||..|-.++..+.
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 39 HAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4568999999999999988887664
No 328
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=91.65 E-value=0.89 Score=46.27 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
.+.+++..++|+|||..|-+++..+
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHh
Confidence 4579999999999999888877554
No 329
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.62 E-value=0.34 Score=49.94 Aligned_cols=48 Identities=25% Similarity=0.248 Sum_probs=38.9
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHh
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~ 155 (635)
.+|.+|+.++|.|||+.+-+++.+. ....--|.|.+|...|.-|.++.
T Consensus 186 ~rglLLfGPpgtGKtmL~~aiAsE~-----~atff~iSassLtsK~~Ge~eK~ 233 (428)
T KOG0740|consen 186 VRGLLLFGPPGTGKTMLAKAIATES-----GATFFNISASSLTSKYVGESEKL 233 (428)
T ss_pred cchhheecCCCCchHHHHHHHHhhh-----cceEeeccHHHhhhhccChHHHH
Confidence 5688999999999999999988653 22335688899999999888765
No 330
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=91.57 E-value=0.25 Score=47.31 Aligned_cols=54 Identities=30% Similarity=0.377 Sum_probs=41.6
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHh-CCCCCcEEEeCccchHHHHHHHHHhcC
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAPRSMLLTWEEEFKKWGI 157 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~-~~~~~~LIv~P~~l~~qW~~E~~~~~~ 157 (635)
.+.-.+++.++|+|||..++.++....+. +. ++++|+-..-..+..+.+..+..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge--~vlyvs~ee~~~~l~~~~~s~g~ 72 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGE--KVLYVSFEEPPEELIENMKSFGW 72 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT----EEEEESSS-HHHHHHHHHTTTS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC--cEEEEEecCCHHHHHHHHHHcCC
Confidence 46678999999999999999999877766 44 67888877777888888887653
No 331
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.54 E-value=0.85 Score=49.84 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=22.0
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
....|+..+.|+|||..|..++..+.
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcc
Confidence 34678899999999999999987764
No 332
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=91.52 E-value=0.76 Score=50.15 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=21.9
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
.+..|+..+.|+|||..|-+++..+.
T Consensus 38 ~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 38 ANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 34578999999999999999887765
No 333
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=91.52 E-value=1.6 Score=46.42 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=37.5
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHh
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~ 155 (635)
+.-.+|+.++|+|||..++.++....+. ..++|+|..-....|......++
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~--g~kvlYvs~EEs~~qi~~ra~rl 144 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN--QMKVLYVSGEESLQQIKMRAIRL 144 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECcCCHHHHHHHHHHc
Confidence 4457999999999999999888766543 24788888866666666555544
No 334
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=91.51 E-value=0.37 Score=49.90 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=21.7
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHH
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
..++|++|..++|+|||..|-+++..
T Consensus 154 ~~p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 154 EPPKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 34678999999999999888887654
No 335
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.50 E-value=0.72 Score=53.40 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHH
Q 006698 74 QREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 74 Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
|..-++.+.+.+.+ ...++.||..++|+|||..+-+++...
T Consensus 178 r~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 178 RDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred cHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 44556676665443 235688999999999998888777554
No 336
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.18 E-value=2.1 Score=44.98 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=19.9
Q ss_pred CCceEEeCCCCchHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFL 124 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i 124 (635)
++|++|..++|+|||+.|=|++
T Consensus 337 PKGVLLvGPPGTGKTlLARAvA 358 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVA 358 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhh
Confidence 6799999999999998887776
No 337
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=91.17 E-value=1.6 Score=40.05 Aligned_cols=55 Identities=15% Similarity=0.144 Sum_probs=33.5
Q ss_pred hhccCCCEEEEeCCCcCCCc----ccHHHHHHHhcccCcEEEEecccCCCChhhHHHHH
Q 006698 228 ILLDLPGLFVFDEGHTPRND----DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282 (635)
Q Consensus 228 ~~~~~~~~vIvDEaH~~kn~----~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll 282 (635)
+....+|+||+||.-..-+. .......+..-+..--+.|||--.+..+.|+..++
T Consensus 111 l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlV 169 (191)
T PRK05986 111 LADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLV 169 (191)
T ss_pred HhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchh
Confidence 34567999999998765443 23344444443555589999985544444444333
No 338
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=91.12 E-value=2 Score=50.28 Aligned_cols=58 Identities=17% Similarity=0.097 Sum_probs=40.6
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLL 146 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~ 146 (635)
.|-+-|++++..+.. ..+-++|-...|+|||.+.-++...+... ..+++.++|..--.
T Consensus 381 ~Ls~eQ~~Av~~i~~------------------~~r~~~v~G~AGTGKTt~l~~~~~~~e~~--G~~V~g~ApTgkAA 438 (1102)
T PRK13826 381 RLSDEQKTAIEHVAG------------------PARIAAVVGRAGAGKTTMMKAAREAWEAA--GYRVVGGALAGKAA 438 (1102)
T ss_pred CCCHHHHHHHHHHhc------------------cCCeEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEcCcHHHH
Confidence 589999999987631 13457888999999997766665444332 34678888865543
No 339
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.11 E-value=1.2 Score=50.46 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=20.8
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
..+.||..++|+|||..+-++....
T Consensus 207 ~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 5688999999999998887776544
No 340
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=91.00 E-value=0.97 Score=49.13 Aligned_cols=52 Identities=13% Similarity=0.020 Sum_probs=38.6
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLTWEEEFKK 154 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qW~~E~~~ 154 (635)
.+-.+..-+=--|||..+...+..++...+..++++++| .+....-.+|+..
T Consensus 254 qk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~ 306 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGA 306 (738)
T ss_pred ccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHH
Confidence 445667777788999877777766666666778899999 6677777777665
No 341
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.97 E-value=1.2 Score=47.72 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=19.9
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
..++..+.|+|||..|-.++..+.
T Consensus 40 ayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 40 AYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 457899999999999888886654
No 342
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=90.93 E-value=1.6 Score=47.84 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=21.2
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
++..|+..+.|+|||..|-.++..+.
T Consensus 38 ~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34568899999999999988887664
No 343
>PRK06904 replicative DNA helicase; Validated
Probab=90.88 E-value=3.8 Score=43.84 Aligned_cols=58 Identities=9% Similarity=-0.007 Sum_probs=40.2
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhcCCCcc
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPF 161 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~~~~~v 161 (635)
+.=+|||.-+|+|||.-|+.++...... ...+++++..-.-..++...+-....+++.
T Consensus 221 G~LiiIaarPg~GKTafalnia~~~a~~-~g~~Vl~fSlEMs~~ql~~Rlla~~s~v~~ 278 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFAMNLCENAAMA-SEKPVLVFSLEMPAEQIMMRMLASLSRVDQ 278 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHh-cCCeEEEEeccCCHHHHHHHHHHhhCCCCH
Confidence 4446999999999999988777654322 245778888877777777766544444433
No 344
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=90.83 E-value=0.99 Score=41.28 Aligned_cols=29 Identities=24% Similarity=0.197 Sum_probs=24.0
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHHhCCC
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPR 133 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~~~~~ 133 (635)
...|+..+|.|||+.++.-+..+...|..
T Consensus 7 kIflG~apGVGKTy~ML~ea~~l~~~G~D 35 (211)
T PF02702_consen 7 KIFLGAAPGVGKTYAMLQEAHRLKEQGVD 35 (211)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT--
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCC
Confidence 46899999999999999999888777665
No 345
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=90.71 E-value=1.8 Score=48.46 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=72.2
Q ss_pred CccccchHHHHH-HHHHhc-CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCc
Q 006698 417 DPEAGIKTRFLL-ILLELS-TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494 (635)
Q Consensus 417 ~~~~s~K~~~l~-~~l~~~-~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~ 494 (635)
.+..++|..... .++... .+.+++|-+.....+.-+.+.+.+.+... |+++..++|+++..+|...++...+ +++
T Consensus 263 g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~-gi~v~lltg~~~~~~r~~~~~~i~~--g~~ 339 (630)
T TIGR00643 263 GDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPL-GIEVALLTGSLKGKRRKELLETIAS--GQI 339 (630)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhccc-CcEEEEEecCCCHHHHHHHHHHHhC--CCC
Confidence 345677876533 333333 67889999998887777776666654322 7999999999999999999998886 557
Q ss_pred EEEEEccCCcccccccccCCeEEEeCC
Q 006698 495 RIMLASTKACCEGINLVGASRVVLLDV 521 (635)
Q Consensus 495 ~vll~st~~~~~GlnL~~a~~vi~~d~ 521 (635)
.|++.+.......+.+.....||+=+.
T Consensus 340 ~IiVgT~~ll~~~~~~~~l~lvVIDEa 366 (630)
T TIGR00643 340 HLVVGTHALIQEKVEFKRLALVIIDEQ 366 (630)
T ss_pred CEEEecHHHHhccccccccceEEEech
Confidence 788866555656666766766665443
No 346
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.60 E-value=3.9 Score=43.81 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=26.9
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA 140 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~ 140 (635)
.++...|..+.|.|||.++..++..+...+..+++.+|.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 345667888999999988877776655544344565554
No 347
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=90.57 E-value=3.5 Score=42.30 Aligned_cols=129 Identities=16% Similarity=0.219 Sum_probs=71.8
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHHHHHHHHHhc--CCCcccccCCCCCcCcccchhhH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLTWEEEFKKWG--IDIPFYNLNKPELSGKENNGAVA 179 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qW~~E~~~~~--~~~~v~~~~~~~~~~~~~~~~~~ 179 (635)
++-..|..++|.|||-+..-+++.+.......++=||.- ..=+ -=.++++.++ .++++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRI-GA~EQLk~Ya~im~vp~------------------ 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRI-GAVEQLKTYADIMGVPL------------------ 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchh-hHHHHHHHHHHHhCCce------------------
Confidence 566789999999999766555555543455556655554 3322 1223343332 11222
Q ss_pred hHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhhhhccCCCEEEEeCCCc-CCCcccHHHHHHHhc
Q 006698 180 LMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHT-PRNDDTCMFKALSRI 258 (635)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~~~~~~~~~vIvDEaH~-~kn~~s~~~~~l~~l 258 (635)
.++.+..-|.... ......|+|.||=+=+ .++. . ...-+..+
T Consensus 264 ----------------------------~vv~~~~el~~ai-------~~l~~~d~ILVDTaGrs~~D~-~-~i~el~~~ 306 (407)
T COG1419 264 ----------------------------EVVYSPKELAEAI-------EALRDCDVILVDTAGRSQYDK-E-KIEELKEL 306 (407)
T ss_pred ----------------------------EEecCHHHHHHHH-------HHhhcCCEEEEeCCCCCccCH-H-HHHHHHHH
Confidence 2333443333322 1122359999998754 3332 1 22222222
Q ss_pred -----ccCcEEEEecccCCCChhhHHHHHHhhhh
Q 006698 259 -----KTRRRIILSGTPFQNNFQELENTLSLVRQ 287 (635)
Q Consensus 259 -----~~~~~l~LTgTP~~n~~~el~~ll~~l~p 287 (635)
....-+.||+|-=.+.+.+++..+..+..
T Consensus 307 ~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i 340 (407)
T COG1419 307 IDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPI 340 (407)
T ss_pred HhccccceEEEEEecCcchHHHHHHHHHhccCCc
Confidence 44557899999877788888877777654
No 348
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.32 E-value=1.8 Score=46.70 Aligned_cols=95 Identities=14% Similarity=0.221 Sum_probs=69.8
Q ss_pred ccccchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcE
Q 006698 418 PEAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495 (635)
Q Consensus 418 ~~~s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~ 495 (635)
+..|+|......++... .|.++||-+........+.+.|.+.| |..+..++|+++..+|.+...+-.+ ++..
T Consensus 5 ~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~~~~~~~--g~~~ 78 (505)
T TIGR00595 5 VTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQAWRKVKN--GEIL 78 (505)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHHHHHHHc--CCCC
Confidence 45688998877766554 68899999999998888888998876 6778999999999998887776665 4566
Q ss_pred EEEEccCCcccccccccCCeEEEeC
Q 006698 496 IMLASTKACCEGINLVGASRVVLLD 520 (635)
Q Consensus 496 vll~st~~~~~GlnL~~a~~vi~~d 520 (635)
|++. |..+- =+-+.....||+=+
T Consensus 79 IVVG-Trsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 79 VVIG-TRSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred EEEC-ChHHH-cCcccCCCEEEEEC
Confidence 7665 43321 13345666666544
No 349
>PRK08506 replicative DNA helicase; Provisional
Probab=90.29 E-value=2.5 Score=45.26 Aligned_cols=56 Identities=20% Similarity=0.133 Sum_probs=39.0
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhcCCCc
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIP 160 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~~~~~ 160 (635)
+.=.+||..+|+|||..++.++...... ..+++++..---..+....+.....+++
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~~~~--g~~V~~fSlEMs~~ql~~Rlla~~s~v~ 247 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKALNQ--DKGVAFFSLEMPAEQLMLRMLSAKTSIP 247 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHHHhc--CCcEEEEeCcCCHHHHHHHHHHHhcCCC
Confidence 3446999999999999999888766432 4577888876666666665544333333
No 350
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.28 E-value=1.4 Score=48.38 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.1
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
+.-|+..+.|+|||..|.+++..+.
T Consensus 39 hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 39 HAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhc
Confidence 4558999999999999999887764
No 351
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=90.25 E-value=1.8 Score=48.72 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=19.7
Q ss_pred CCceEEeCCCCchHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
....||..++|+|||..|-++...
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999887777643
No 352
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=90.21 E-value=2.1 Score=44.14 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=21.1
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
+..|+..+.|+|||..|-+++..+.
T Consensus 37 ~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 37 HAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4568999999999999888887764
No 353
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=90.06 E-value=2.9 Score=42.11 Aligned_cols=37 Identities=16% Similarity=0.102 Sum_probs=25.7
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
+.-..+..+.|+|||.++..++..+... .++++++.-
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~--g~~V~Li~~ 150 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQ--GKKVLLAAG 150 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc--CCeEEEEec
Confidence 3445677899999998888877665433 346766653
No 354
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=89.95 E-value=0.22 Score=46.24 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=15.6
Q ss_pred EEeCCCCchHHHHHHHH-HHHHHH
Q 006698 107 IISHAPGTGKTGLTLVF-LQAYMK 129 (635)
Q Consensus 107 iLad~~GlGKT~~ai~~-i~~~~~ 129 (635)
++..-||+|||+.|+.. +...++
T Consensus 4 ~~~G~pGsGKS~~av~~~i~~~l~ 27 (193)
T PF05707_consen 4 LITGKPGSGKSYYAVSYVIIPALK 27 (193)
T ss_dssp EEE--TTSSHHHHHHHHHHH-GGG
T ss_pred EEEcCCCCcHhHHHHHHHHHHHHh
Confidence 66778999999998877 555444
No 355
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=89.93 E-value=2.4 Score=38.44 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=20.2
Q ss_pred eEEeCCCCchHHHHHHHHHHHHHHh
Q 006698 106 CIISHAPGTGKTGLTLVFLQAYMKL 130 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~~~~ 130 (635)
.++..++|+|||..+..++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4678899999999998888766544
No 356
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=89.83 E-value=2.4 Score=46.22 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=22.7
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
++..|+..+.|+|||..|.+++..+..
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 446789999999999999999877753
No 357
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=89.62 E-value=7.9 Score=37.27 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=29.6
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
+.-.+|+..+|+|||..++.++....... ..+++++..
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-g~~vly~s~ 50 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQ-GKPVLFFSL 50 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCceEEEeC
Confidence 44579999999999999998887766542 347788885
No 358
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=89.57 E-value=2.3 Score=45.81 Aligned_cols=53 Identities=25% Similarity=0.259 Sum_probs=42.5
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhc
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWG 156 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~ 156 (635)
.+.-.++..++|+|||..++.++....+.+ .+++++.--.-..|-...++.++
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~g--e~~~y~s~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANK--ERAILFAYEESRAQLLRNAYSWG 314 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEEeeCCHHHHHHHHHHcC
Confidence 456789999999999999999998776543 46788888777778777777764
No 359
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=89.55 E-value=6.3 Score=38.76 Aligned_cols=51 Identities=18% Similarity=0.211 Sum_probs=34.8
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKK 154 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~ 154 (635)
+.-++|+.++|+|||..++.++....... ..+++++.--.-..+....+..
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~-g~~vl~iS~E~~~~~~~~r~~~ 80 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQH-GVRVGTISLEEPVVRTARRLLG 80 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhc-CceEEEEEcccCHHHHHHHHHH
Confidence 55679999999999999998887665431 3467787764444444444433
No 360
>CHL00176 ftsH cell division protein; Validated
Probab=89.37 E-value=1.4 Score=48.83 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=20.5
Q ss_pred CCceEEeCCCCchHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
.+|++|..++|+|||..|=+++..
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999988887643
No 361
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=89.34 E-value=6.1 Score=41.98 Aligned_cols=52 Identities=12% Similarity=0.033 Sum_probs=35.7
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHh
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~ 155 (635)
+.=.+|+..+|+|||..++.++....... ..+++++..-.-..+....+...
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~-g~~vl~~SlEm~~~~i~~R~~~~ 246 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKE-GKPVAFFSLEMSAEQLAMRMLSS 246 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhC-CCeEEEEeCcCCHHHHHHHHHHH
Confidence 33469999999999999998886654322 34678888755555555444443
No 362
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=89.27 E-value=1.5 Score=44.10 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=20.4
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
.++.+|..++|+|||..+.+++..+
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999998888776543
No 363
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=89.17 E-value=0.93 Score=45.57 Aligned_cols=50 Identities=14% Similarity=0.024 Sum_probs=33.5
Q ss_pred hhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHH
Q 006698 228 ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS 283 (635)
Q Consensus 228 ~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~ 283 (635)
.+...+|++|+.|.- . .....++..+.+.+.-.+ +|-..|++.+...-+.
T Consensus 211 aLR~~PD~IivGEiR---g--~ea~~~l~a~~tGh~G~i-tTiHA~s~~~a~~Rl~ 260 (323)
T PRK13833 211 TMRLRPDRIIVGEVR---D--GAALTLLKAWNTGHPGGV-TTIHSNTAMSALRRLE 260 (323)
T ss_pred HhCCCCCEEEEeecC---C--HHHHHHHHHHcCCCCceE-EEECCCCHHHHHHHHH
Confidence 455679999999974 2 234556666666654333 7788888888766443
No 364
>PRK11054 helD DNA helicase IV; Provisional
Probab=89.05 E-value=0.7 Score=51.71 Aligned_cols=66 Identities=12% Similarity=0.096 Sum_probs=46.1
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCC--CCcEEEeCccch
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPR--CRPVIIAPRSML 145 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~--~~~LIv~P~~l~ 145 (635)
..|-|-|+++|..- .+++++....|+|||.++++-+.+++..+.. ..+|++|.....
T Consensus 195 ~~L~~~Q~~av~~~---------------------~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~A 253 (684)
T PRK11054 195 SPLNPSQARAVVNG---------------------EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQA 253 (684)
T ss_pred CCCCHHHHHHHhCC---------------------CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHH
Confidence 34778888887532 3356677778999999999988887765532 356999997766
Q ss_pred HHHHHH-HHH
Q 006698 146 LTWEEE-FKK 154 (635)
Q Consensus 146 ~qW~~E-~~~ 154 (635)
.+...| +..
T Consensus 254 A~em~eRL~~ 263 (684)
T PRK11054 254 AEEMDERIRE 263 (684)
T ss_pred HHHHHHHHHH
Confidence 665554 443
No 365
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=88.95 E-value=2.9 Score=42.49 Aligned_cols=48 Identities=13% Similarity=0.208 Sum_probs=35.4
Q ss_pred ccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC
Q 006698 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131 (635)
Q Consensus 70 L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~ 131 (635)
+||+|...-+.+... .+ .-++..++..+.|.|||..|..++..+.-..
T Consensus 2 ~yPW~~~~~~~l~~~-~~-------------rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQAL-RA-------------RLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHh-cC-------------CcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 578888776666543 11 2255778999999999999999998876544
No 366
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=88.95 E-value=0.53 Score=45.83 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=43.4
Q ss_pred ccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHh
Q 006698 94 LKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155 (635)
Q Consensus 94 ~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~ 155 (635)
+..+.+...+.||+|..++|.|||++|=+++..+ ...+|+++-..++....-|-.+.
T Consensus 157 lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m-----g~nfl~v~ss~lv~kyiGEsaRl 213 (388)
T KOG0651|consen 157 LFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM-----GVNFLKVVSSALVDKYIGESARL 213 (388)
T ss_pred hccccCCCCCceeEEeCCCCCchhHHHHHHHHhc-----CCceEEeeHhhhhhhhcccHHHH
Confidence 3334556678899999999999999998888654 45678888888887766665543
No 367
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=88.94 E-value=3.7 Score=43.42 Aligned_cols=50 Identities=18% Similarity=0.143 Sum_probs=34.2
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFK 153 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~ 153 (635)
+.=.+|+..+|+|||..++.++...... ...+++++..-.-..+....+.
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~-~g~~v~~fSlEm~~~~l~~Rl~ 243 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALR-EGKPVLFFSLEMSAEQLGERLL 243 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCCCHHHHHHHHH
Confidence 3446999999999999999888655322 2456788886555555554443
No 368
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=88.93 E-value=0.26 Score=44.32 Aligned_cols=53 Identities=17% Similarity=0.199 Sum_probs=32.5
Q ss_pred hhccCCCEEEEeCCCcCCCcc----cHHHHHHHhcccCcEEEEecccCCCChhhHHH
Q 006698 228 ILLDLPGLFVFDEGHTPRNDD----TCMFKALSRIKTRRRIILSGTPFQNNFQELEN 280 (635)
Q Consensus 228 ~~~~~~~~vIvDEaH~~kn~~----s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ 280 (635)
+....+|+||+||.-..-+.+ ......+..-+..--+.|||.-.+..+.|+..
T Consensus 93 l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 93 LADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred HhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 344579999999997544322 23444444445556899999855444444333
No 369
>PRK05580 primosome assembly protein PriA; Validated
Probab=88.68 E-value=3.1 Score=46.86 Aligned_cols=95 Identities=15% Similarity=0.199 Sum_probs=69.8
Q ss_pred ccccchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcE
Q 006698 418 PEAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495 (635)
Q Consensus 418 ~~~s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~ 495 (635)
+..++|.......+... .|.++||.+.....+..+.+.|.+.| |..+..++|+++..+|.+...+... ++..
T Consensus 170 ~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~f----g~~v~~~~s~~s~~~r~~~~~~~~~--g~~~ 243 (679)
T PRK05580 170 VTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARF----GAPVAVLHSGLSDGERLDEWRKAKR--GEAK 243 (679)
T ss_pred CCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh----CCCEEEEECCCCHHHHHHHHHHHHc--CCCC
Confidence 44578888776665544 68899999999999898889998876 6789999999999999888877776 4567
Q ss_pred EEEEccCCcccccccccCCeEEEeC
Q 006698 496 IMLASTKACCEGINLVGASRVVLLD 520 (635)
Q Consensus 496 vll~st~~~~~GlnL~~a~~vi~~d 520 (635)
|++.+..+. =+.+.....||+-+
T Consensus 244 IVVgTrsal--~~p~~~l~liVvDE 266 (679)
T PRK05580 244 VVIGARSAL--FLPFKNLGLIIVDE 266 (679)
T ss_pred EEEeccHHh--cccccCCCEEEEEC
Confidence 777533222 23445566666544
No 370
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.65 E-value=1.7 Score=47.94 Aligned_cols=45 Identities=29% Similarity=0.234 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 73 ~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
-|...+..+.+.+..| .-.+.-|+..+.|+|||..|..++..+.-
T Consensus 20 GQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 20 AQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred CcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3556666655544332 12446789999999999999999877643
No 371
>PRK08840 replicative DNA helicase; Provisional
Probab=88.65 E-value=3.8 Score=43.71 Aligned_cols=52 Identities=12% Similarity=0.022 Sum_probs=36.4
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHh
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~ 155 (635)
+.=.+||.-+|+|||.-++.++...... ...+++++..-.-..|+..-+-..
T Consensus 217 g~LiviaarPg~GKTafalnia~~~a~~-~~~~v~~fSlEMs~~ql~~Rlla~ 268 (464)
T PRK08840 217 SDLIIVAARPSMGKTTFAMNLCENAAMD-QDKPVLIFSLEMPAEQLMMRMLAS 268 (464)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHh-CCCeEEEEeccCCHHHHHHHHHHh
Confidence 4446999999999999998777554322 245678888766666766665443
No 372
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=88.63 E-value=2.9 Score=50.82 Aligned_cols=65 Identities=20% Similarity=0.205 Sum_probs=43.8
Q ss_pred hHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHH--hCCCCCcEEEeCc
Q 006698 65 DVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMK--LHPRCRPVIIAPR 142 (635)
Q Consensus 65 ~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~--~~~~~~~LIv~P~ 142 (635)
.+...|-+-|++|+..++.. ..+-++|....|+|||.+.-+++..+.. ......++.++|.
T Consensus 831 ~~~~~Lt~~Qr~Av~~iLts-----------------~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPT 893 (1623)
T PRK14712 831 ELMEKLTSGQRAATRMILET-----------------SDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPT 893 (1623)
T ss_pred hhhcccCHHHHHHHHHHHhC-----------------CCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEech
Confidence 34457999999999988642 1346899999999999876555443322 2233456778995
Q ss_pred cchH
Q 006698 143 SMLL 146 (635)
Q Consensus 143 ~l~~ 146 (635)
+-..
T Consensus 894 gkAa 897 (1623)
T PRK14712 894 HRAV 897 (1623)
T ss_pred HHHH
Confidence 5443
No 373
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=88.53 E-value=2.6 Score=42.98 Aligned_cols=91 Identities=20% Similarity=0.277 Sum_probs=63.2
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHh
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMD 182 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 182 (635)
+.-.+++.++|.||+-.-+-++..+...+ ++|.|+=---+.||+--..+....
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES~~QiklRA~RL~~~------------------------ 145 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEESLQQIKLRADRLGLP------------------------ 145 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcCHHHHHHHHHHhCCC------------------------
Confidence 34568999999999977666665554433 789999988889999888886411
Q ss_pred hhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhhhhccCCCEEEEeCCCcCCCc
Q 006698 183 NRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRND 247 (635)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~ 247 (635)
..++.+.....+..+. ..+....++++|||=.+.+-++
T Consensus 146 ----------------------~~~l~l~aEt~~e~I~-----~~l~~~~p~lvVIDSIQT~~s~ 183 (456)
T COG1066 146 ----------------------TNNLYLLAETNLEDII-----AELEQEKPDLVVIDSIQTLYSE 183 (456)
T ss_pred ----------------------ccceEEehhcCHHHHH-----HHHHhcCCCEEEEeccceeecc
Confidence 1234555554444433 2345567999999999977543
No 374
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=88.28 E-value=1 Score=45.43 Aligned_cols=55 Identities=29% Similarity=0.376 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 73 ~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
..++|+--+.+....| --.+++.+++.++|+|||..|++++..+ ++.-|...++-
T Consensus 31 ~AReAagiiv~mIk~~-----------K~aGr~iLiaGppGtGKTAlA~~ia~eL---G~~~PF~~isg 85 (398)
T PF06068_consen 31 KAREAAGIIVDMIKEG-----------KIAGRAILIAGPPGTGKTALAMAIAKEL---GEDVPFVSISG 85 (398)
T ss_dssp HHHHHHHHHHHHHHTT-------------TT-EEEEEE-TTSSHHHHHHHHHHHC---TTTS-EEEEEG
T ss_pred HHHHHHHHHHHHHhcc-----------cccCcEEEEeCCCCCCchHHHHHHHHHh---CCCCCeeEccc
Confidence 4556666555554432 1247899999999999999999988655 44445444443
No 375
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=88.19 E-value=1.4 Score=42.21 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=26.4
Q ss_pred CCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChh
Q 006698 232 LPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQ 276 (635)
Q Consensus 232 ~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~ 276 (635)
..+.+||||++.+-.- ....+..+.....+.+-|=|.|-...
T Consensus 62 ~~~~liiDE~~~~~~g---~l~~l~~~~~~~~~~l~GDp~Q~~~~ 103 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPPG---YLLLLLSLSPAKNVILFGDPLQIPYI 103 (234)
T ss_pred cCCEEEEeccccCChH---HHHHHHhhccCcceEEEECchhccCC
Confidence 3689999999987431 22224444444467777999775443
No 376
>PHA00012 I assembly protein
Probab=88.18 E-value=1.2 Score=44.17 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=24.0
Q ss_pred EEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCcc
Q 006698 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRS 143 (635)
Q Consensus 107 iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~ 143 (635)
++..-+|+|||+.|++-+...++.|. .|++--.
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~~Gr----~VaTNid 37 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLVKGC----IVATNLN 37 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHHcCC----EEEeCCc
Confidence 56677899999999988777766654 4555433
No 377
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=88.16 E-value=3.3 Score=51.08 Aligned_cols=67 Identities=21% Similarity=0.246 Sum_probs=44.7
Q ss_pred ChhHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh--CCCCCcEEEe
Q 006698 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL--HPRCRPVIIA 140 (635)
Q Consensus 63 p~~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~--~~~~~~LIv~ 140 (635)
+..+...|-+-|++|+..++.. ..+-++|-...|+|||.+.-+++..+... ....+++.++
T Consensus 961 ~~~~~~~Lt~~Q~~Av~~il~s-----------------~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glA 1023 (1747)
T PRK13709 961 PGELMEGLTSGQRAATRMILES-----------------TDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLG 1023 (1747)
T ss_pred HHHhcCCCCHHHHHHHHHHHhC-----------------CCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEEC
Confidence 3344456899999999988652 23477899999999997766655444322 1223567789
Q ss_pred CccchH
Q 006698 141 PRSMLL 146 (635)
Q Consensus 141 P~~l~~ 146 (635)
|..-..
T Consensus 1024 PTgrAA 1029 (1747)
T PRK13709 1024 PTHRAV 1029 (1747)
T ss_pred CcHHHH
Confidence 965443
No 378
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=87.96 E-value=0.73 Score=49.86 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.1
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHH
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
..+|++|..++|+|||..+=+++..
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999988877643
No 379
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=87.95 E-value=1.2 Score=47.35 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=26.7
Q ss_pred cCCCEEEEeCCCcCCCcccHHHHHHHhc---ccCcEEEEeccc
Q 006698 231 DLPGLFVFDEGHTPRNDDTCMFKALSRI---KTRRRIILSGTP 270 (635)
Q Consensus 231 ~~~~~vIvDEaH~~kn~~s~~~~~l~~l---~~~~~l~LTgTP 270 (635)
.++.+.||||+|.+. +..+.++.+- +..|++++=||-
T Consensus 118 ~ryKVyiIDEvHMLS---~~afNALLKTLEEPP~hV~FIlATT 157 (515)
T COG2812 118 GRYKVYIIDEVHMLS---KQAFNALLKTLEEPPSHVKFILATT 157 (515)
T ss_pred ccceEEEEecHHhhh---HHHHHHHhcccccCccCeEEEEecC
Confidence 457899999999984 3456665554 777887777774
No 380
>PRK05748 replicative DNA helicase; Provisional
Probab=87.95 E-value=4.6 Score=43.12 Aligned_cols=50 Identities=16% Similarity=0.104 Sum_probs=35.6
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFK 153 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~ 153 (635)
+.-.+||..+|+|||.-++.++...... ...+++++..---..+....+.
T Consensus 203 G~livIaarpg~GKT~~al~ia~~~a~~-~g~~v~~fSlEms~~~l~~R~l 252 (448)
T PRK05748 203 NDLIIVAARPSVGKTAFALNIAQNVATK-TDKNVAIFSLEMGAESLVMRML 252 (448)
T ss_pred CceEEEEeCCCCCchHHHHHHHHHHHHh-CCCeEEEEeCCCCHHHHHHHHH
Confidence 3447999999999999999888665322 2346788887666666665554
No 381
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=87.95 E-value=1.7 Score=41.87 Aligned_cols=53 Identities=21% Similarity=0.319 Sum_probs=38.2
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhc
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWG 156 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~ 156 (635)
.+...+++.++|+|||..++.++....+. ..++++|.--....+-.+.+..+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeCCHHHHHHHHHHhC
Confidence 46678999999999999999988766543 346788886555555555555543
No 382
>PRK04132 replication factor C small subunit; Provisional
Probab=87.93 E-value=2.7 Score=47.91 Aligned_cols=37 Identities=24% Similarity=0.208 Sum_probs=24.4
Q ss_pred CCEEEEeCCCcCCCcccHHHHHHHhc----ccCcEEEEecccCC
Q 006698 233 PGLFVFDEGHTPRNDDTCMFKALSRI----KTRRRIILSGTPFQ 272 (635)
Q Consensus 233 ~~~vIvDEaH~~kn~~s~~~~~l~~l----~~~~~l~LTgTP~~ 272 (635)
+.+||+||||++.. ....++..+ +...+++|+.++..
T Consensus 631 ~KVvIIDEaD~Lt~---~AQnALLk~lEep~~~~~FILi~N~~~ 671 (846)
T PRK04132 631 FKIIFLDEADALTQ---DAQQALRRTMEMFSSNVRFILSCNYSS 671 (846)
T ss_pred CEEEEEECcccCCH---HHHHHHHHHhhCCCCCeEEEEEeCChh
Confidence 56899999999943 233333333 45667888877743
No 383
>PRK05973 replicative DNA helicase; Provisional
Probab=87.93 E-value=1.7 Score=41.63 Aligned_cols=52 Identities=21% Similarity=0.216 Sum_probs=37.0
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHh
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~ 155 (635)
++.-.+|+..+|+|||..++.++....+. ..+++++.--.--.+-.+.+..+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes~~~i~~R~~s~ 114 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEYTEQDVRDRLRAL 114 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCCHHHHHHHHHHc
Confidence 35567999999999999999998776554 34678887644445555555544
No 384
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=87.91 E-value=6.7 Score=41.06 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=26.4
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
.-.+++...|+|||-++..++..+.+. ..++++|+-
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~--G~kV~lV~~ 136 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRK--GFKPCLVCA 136 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEcC
Confidence 346789999999998888887665433 346777765
No 385
>PRK07004 replicative DNA helicase; Provisional
Probab=87.80 E-value=3.2 Score=44.26 Aligned_cols=50 Identities=12% Similarity=0.036 Sum_probs=35.4
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFK 153 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~ 153 (635)
+.=.+||..+|+|||.-++.++...... ...+++++..---..|....+-
T Consensus 213 g~liviaarpg~GKT~~al~ia~~~a~~-~~~~v~~fSlEM~~~ql~~R~l 262 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFSMNIGEYVAVE-YGLPVAVFSMEMPGTQLAMRML 262 (460)
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHH-cCCeEEEEeCCCCHHHHHHHHH
Confidence 4446999999999999999887654322 2346788877666666665554
No 386
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=87.79 E-value=1.8 Score=42.32 Aligned_cols=44 Identities=18% Similarity=0.138 Sum_probs=32.9
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLT 147 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~q 147 (635)
+.=++||..+|.|||..++.++......+. .++++++.-.-..+
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~-~~vly~SlEm~~~~ 62 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGG-YPVLYFSLEMSEEE 62 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTS-SEEEEEESSS-HHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcC-CeEEEEcCCCCHHH
Confidence 345799999999999999999887766543 57899988444433
No 387
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=87.78 E-value=1.7 Score=40.07 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=22.6
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
++..|+..+.|.|||..|..++..+..
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 356789999999999999998877654
No 388
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=87.77 E-value=1.3 Score=47.17 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=35.4
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCC----CCCcEEEeCccchHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHP----RCRPVIIAPRSMLLTWEE 150 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~----~~~~LIv~P~~l~~qW~~ 150 (635)
++-.++-...|+|||.+|+.-++.++-..+ .+++||+.|+.+......
T Consensus 226 ~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis 277 (747)
T COG3973 226 NKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYIS 277 (747)
T ss_pred CCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHH
Confidence 445688899999999999877666554332 356899999988765544
No 389
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=87.74 E-value=4 Score=43.43 Aligned_cols=45 Identities=22% Similarity=0.222 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 73 ~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
-|...+.++.+.+..| .-.+..|+..+.|+|||..|.+++..+..
T Consensus 21 Gq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 21 GQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred CcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3556666665554432 11345789999999999999999877653
No 390
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=87.74 E-value=4.2 Score=47.24 Aligned_cols=102 Identities=11% Similarity=0.107 Sum_probs=75.6
Q ss_pred cCccccchHHHHHH-HHHhc-CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCC
Q 006698 416 LDPEAGIKTRFLLI-LLELS-TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQ 493 (635)
Q Consensus 416 ~~~~~s~K~~~l~~-~l~~~-~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~ 493 (635)
..+..++|...... ++... .+.+++|.+..+..+.-..+.+.+.+... ++.+..++|..+..++.+.++...+ ++
T Consensus 478 ~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~--g~ 554 (926)
T TIGR00580 478 CGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANF-PVTIELLSRFRSAKEQNEILKELAS--GK 554 (926)
T ss_pred ECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHc--CC
Confidence 34556788865443 23222 67899999999998888888887765432 6788899999999999999999887 56
Q ss_pred cEEEEEccCCcccccccccCCeEEEeC
Q 006698 494 ARIMLASTKACCEGINLVGASRVVLLD 520 (635)
Q Consensus 494 ~~vll~st~~~~~GlnL~~a~~vi~~d 520 (635)
+.|+|.+.......+.+.....+|+=+
T Consensus 555 ~dIVIGTp~ll~~~v~f~~L~llVIDE 581 (926)
T TIGR00580 555 IDILIGTHKLLQKDVKFKDLGLLIIDE 581 (926)
T ss_pred ceEEEchHHHhhCCCCcccCCEEEeec
Confidence 788887666666667777777777644
No 391
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=87.71 E-value=6 Score=41.16 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=23.9
Q ss_pred eEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe
Q 006698 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA 140 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~ 140 (635)
.++..+.|+|||.++..++..+... ...+++++.
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~-~G~~V~Lit 259 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLH-MGKSVSLYT 259 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEec
Confidence 6788999999999998888655322 223555554
No 392
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=87.68 E-value=6.6 Score=38.62 Aligned_cols=37 Identities=19% Similarity=0.106 Sum_probs=26.6
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
.+-.++...+|.|||.++..++..+.+. ..++++|.-
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~ 108 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAG 108 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeC
Confidence 3456677999999999888888666443 346766664
No 393
>PRK06620 hypothetical protein; Validated
Probab=87.68 E-value=3.8 Score=38.67 Aligned_cols=35 Identities=9% Similarity=0.354 Sum_probs=22.6
Q ss_pred CEEEEeCCCcCCCcccHHHHHHHhc-ccCcEEEEeccc
Q 006698 234 GLFVFDEGHTPRNDDTCMFKALSRI-KTRRRIILSGTP 270 (635)
Q Consensus 234 ~~vIvDEaH~~kn~~s~~~~~l~~l-~~~~~l~LTgTP 270 (635)
+++++||+|.+. ....+..+..+ ...+.+++|||-
T Consensus 87 d~lliDdi~~~~--~~~lf~l~N~~~e~g~~ilits~~ 122 (214)
T PRK06620 87 NAFIIEDIENWQ--EPALLHIFNIINEKQKYLLLTSSD 122 (214)
T ss_pred CEEEEeccccch--HHHHHHHHHHHHhcCCEEEEEcCC
Confidence 789999999652 22344333333 455678999984
No 394
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.38 E-value=0.54 Score=46.76 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=34.6
Q ss_pred CCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHH
Q 006698 98 TSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEE 151 (635)
Q Consensus 98 ~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E 151 (635)
.....++|+||..++|+|||+.|=|++... ....+=|+=+.++..+.-|
T Consensus 180 ~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T-----~AtFIrvvgSElVqKYiGE 228 (406)
T COG1222 180 LGIDPPKGVLLYGPPGTGKTLLAKAVANQT-----DATFIRVVGSELVQKYIGE 228 (406)
T ss_pred cCCCCCCceEeeCCCCCcHHHHHHHHHhcc-----CceEEEeccHHHHHHHhcc
Confidence 444678999999999999999998888543 3344555556666554444
No 395
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.34 E-value=2.1 Score=47.30 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=20.5
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
..|+..+.|+|||..|..++..+.
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 348999999999999999987664
No 396
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=87.28 E-value=0.57 Score=46.54 Aligned_cols=27 Identities=37% Similarity=0.605 Sum_probs=23.7
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHHH
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
..++|.+++.++|+|||..|+++...+
T Consensus 63 ~aGrgiLi~GppgTGKTAlA~gIa~eL 89 (450)
T COG1224 63 MAGRGILIVGPPGTGKTALAMGIAREL 89 (450)
T ss_pred ccccEEEEECCCCCcHHHHHHHHHHHh
Confidence 347899999999999999999988665
No 397
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.23 E-value=7.3 Score=38.17 Aligned_cols=49 Identities=12% Similarity=0.050 Sum_probs=31.4
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC----ccchHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP----RSMLLTWEEEFK 153 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P----~~l~~qW~~E~~ 153 (635)
+....+..+.|+|||..+..++..+... ..++.+|.- ...+.||+....
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~--~~~v~~i~~D~~ri~~~~ql~~~~~ 127 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGK--KKTVGFITTDHSRIGTVQQLQDYVK 127 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHhh
Confidence 4577889999999998777666554332 234555544 246677765444
No 398
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=87.15 E-value=1.8 Score=46.58 Aligned_cols=55 Identities=11% Similarity=-0.031 Sum_probs=37.4
Q ss_pred eEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHHHHHHH----HHhcCCCc
Q 006698 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLTWEEEF----KKWGIDIP 160 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qW~~E~----~~~~~~~~ 160 (635)
.+.--+=--|||...+.+|..++.....-++..++- +++..--..|+ .+|+|.-.
T Consensus 205 TVFLVPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~ 264 (668)
T PHA03372 205 TVFLVPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKH 264 (668)
T ss_pred eEEEecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccc
Confidence 344445567999888888877777666667788887 55555545554 57877543
No 399
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=87.10 E-value=1.4 Score=50.19 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=20.9
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHH
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
..++|.+|..++|+|||..+-+++..
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHH
Confidence 34678999999999999887776543
No 400
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=86.83 E-value=6.3 Score=35.08 Aligned_cols=51 Identities=14% Similarity=0.075 Sum_probs=32.1
Q ss_pred hccCCCEEEEeCCCcCCCc----ccHHHHHHHhcccCcEEEEecccCCCChhhHH
Q 006698 229 LLDLPGLFVFDEGHTPRND----DTCMFKALSRIKTRRRIILSGTPFQNNFQELE 279 (635)
Q Consensus 229 ~~~~~~~vIvDEaH~~kn~----~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~ 279 (635)
....+|+||+||.=..-+. .......+.+-+...-+.|||-=.+..+.|+.
T Consensus 92 ~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~A 146 (159)
T cd00561 92 ASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAA 146 (159)
T ss_pred hcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhC
Confidence 3456899999998765332 23344445444556679999986544444443
No 401
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=86.80 E-value=2.6 Score=42.36 Aligned_cols=43 Identities=23% Similarity=0.155 Sum_probs=32.0
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLT 147 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~q 147 (635)
++-..++.++|+|||..|+.++....+. .+++++|-......+
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP 97 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHH
Confidence 4557899999999999999988776554 456777766554443
No 402
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=86.78 E-value=2.1 Score=39.93 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=18.2
Q ss_pred ceEEeCCCCchHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
-.+++.++|+|||.++-+++..+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999998876666544
No 403
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=86.68 E-value=5.2 Score=42.01 Aligned_cols=38 Identities=16% Similarity=0.084 Sum_probs=27.2
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
+.-.+++...|+|||.++.-++..+.... ..++++|+=
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~-g~kV~lV~~ 136 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQ-GKKVLLVAC 136 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhC-CCeEEEEec
Confidence 44688999999999999988887654322 345655553
No 404
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.56 E-value=2.5 Score=42.58 Aligned_cols=50 Identities=14% Similarity=0.130 Sum_probs=31.7
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhc
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWG 156 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~ 156 (635)
-.+++.=-|+|||-++.-++.+|.+. ..++++||-..-..--.++++.+.
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kkk--G~K~~LvcaDTFRagAfDQLkqnA 152 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAYYYKKK--GYKVALVCADTFRAGAFDQLKQNA 152 (483)
T ss_pred EEEEEeccCCCcceeHHHHHHHHHhc--CCceeEEeecccccchHHHHHHHh
Confidence 35677888999998877777555443 346777776444444444555544
No 405
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=86.51 E-value=1.4 Score=42.92 Aligned_cols=51 Identities=20% Similarity=0.371 Sum_probs=29.3
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccch-----HHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSML-----LTWEEEFKK 154 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~-----~qW~~E~~~ 154 (635)
-=+++..++|+||+-..=.++..-+-.-....+.+|+| +.++ .-|..++.+
T Consensus 88 ~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~E 144 (369)
T PF02456_consen 88 FIGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCE 144 (369)
T ss_pred eEEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHh
Confidence 34788999999999332233222111111223489999 6665 457666654
No 406
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=86.42 E-value=2.7 Score=46.88 Aligned_cols=131 Identities=16% Similarity=0.091 Sum_probs=68.9
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCC--cEEEe------CccchHHHHHHHHHhcCCCcccccCCCCCcCccc
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCR--PVIIA------PRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKEN 174 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~--~LIv~------P~~l~~qW~~E~~~~~~~~~v~~~~~~~~~~~~~ 174 (635)
..-+++-.++|+|||-+...+|..-.-....+. -.++| |.++.+...+|=..-.-+ .+.++..-.+..
T Consensus 393 n~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~--tvgy~vRf~Sa~-- 468 (1282)
T KOG0921|consen 393 NRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGE--TCGYNVRFDSAT-- 468 (1282)
T ss_pred CceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcc--cccccccccccc--
Confidence 567899999999999998887765443322211 13333 334444444332221111 111111000000
Q ss_pred chhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhhhhccCCCEEEEeCCCcCCCcccHHHHH
Q 006698 175 NGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKA 254 (635)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~ 254 (635)
......++.++-+.+.+.... .......+|+||.|..--..-.+...
T Consensus 469 ---------------------------prpyg~i~fctvgvllr~~e~------glrg~sh~i~deiherdv~~dfll~~ 515 (1282)
T KOG0921|consen 469 ---------------------------PRPYGSIMFCTVGVLLRMMEN------GLRGISHVIIDEIHERDVDTDFVLIV 515 (1282)
T ss_pred ---------------------------cccccceeeeccchhhhhhhh------cccccccccchhhhhhccchHHHHHH
Confidence 012234566666655443322 11235789999999865544555555
Q ss_pred HHhc----ccCcEEEEeccc
Q 006698 255 LSRI----KTRRRIILSGTP 270 (635)
Q Consensus 255 l~~l----~~~~~l~LTgTP 270 (635)
++.+ +.-+++++++|-
T Consensus 516 lr~m~~ty~dl~v~lmsatI 535 (1282)
T KOG0921|consen 516 LREMISTYRDLRVVLMSATI 535 (1282)
T ss_pred HHhhhccchhhhhhhhhccc
Confidence 5555 445678899995
No 407
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=86.42 E-value=3.3 Score=42.63 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=34.4
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhc
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWG 156 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~ 156 (635)
+.-.+++.=-|+|||-++.-++.++.+ ...++|+||--.-..-=.++++...
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk--~~~kvllVaaD~~RpAA~eQL~~La 151 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKK--KGKKVLLVAADTYRPAAIEQLKQLA 151 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHH--cCCceEEEecccCChHHHHHHHHHH
Confidence 445788888999999888888766655 4567777775433333334444443
No 408
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=86.36 E-value=2.2 Score=40.60 Aligned_cols=52 Identities=25% Similarity=0.191 Sum_probs=39.7
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhc
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWG 156 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~ 156 (635)
+.-.+++.++|+|||..++.++....+. ..+++++....-..+-.+.+..+.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISLEEREERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHHHHcC
Confidence 4556889999999999999988766554 457888888776677667776654
No 409
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=86.34 E-value=2.2 Score=42.41 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=28.6
Q ss_pred CEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCCh
Q 006698 234 GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275 (635)
Q Consensus 234 ~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~ 275 (635)
.+||+||||+ ....+.-..+.+|-...+..+||++.|-++
T Consensus 245 AfVIlDEaQN--tT~~QmKMfLTRiGf~skmvItGD~tQiDL 284 (348)
T COG1702 245 AFVILDEAQN--TTVGQMKMFLTRIGFESKMVITGDITQIDL 284 (348)
T ss_pred eEEEEecccc--cchhhhceeeeeecCCceEEEEcCcccccC
Confidence 5799999998 223344445566677888999999976544
No 410
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=86.26 E-value=2 Score=42.14 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.2
Q ss_pred CCceEEeCCCCchHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~ 125 (635)
+...+|..++|+|||..|-++..
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999888774
No 411
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.16 E-value=2.7 Score=43.53 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHH
Q 006698 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 73 ~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
.|..+++.+.+.+..| ...+..++..+.|+|||..+-+++..+
T Consensus 21 g~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l 63 (367)
T PRK14970 21 GQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKI 63 (367)
T ss_pred CcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4555666555554332 124578899999999998888876554
No 412
>PRK05636 replicative DNA helicase; Provisional
Probab=86.08 E-value=12 Score=40.40 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=34.0
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKK 154 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~ 154 (635)
.=.+|+..+|+|||..++.++....... ..+++++..-.-..|+..-+-.
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a~~~-g~~v~~fSlEMs~~ql~~R~ls 315 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSASIKH-NKASVIFSLEMSKSEIVMRLLS 315 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEEeeCCHHHHHHHHHH
Confidence 3458899999999999988876543222 3467888775555666555443
No 413
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=86.05 E-value=12 Score=37.62 Aligned_cols=28 Identities=14% Similarity=0.373 Sum_probs=24.0
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHh
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKL 130 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~ 130 (635)
...-++..+.|.||+..|.+++..++-.
T Consensus 26 ~ha~Lf~G~~G~Gk~~~A~~~a~~llc~ 53 (314)
T PRK07399 26 APAYLFAGPEGVGRKLAALCFIEGLLSQ 53 (314)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 4578999999999999999999877644
No 414
>PRK10867 signal recognition particle protein; Provisional
Probab=86.02 E-value=5.2 Score=42.05 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=33.3
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC----ccchHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP----RSMLLTWEEEFK 153 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P----~~l~~qW~~E~~ 153 (635)
+.-.+++...|+|||.++.-++..+... ...++++|+= +....||..-..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~-~G~kV~lV~~D~~R~aa~eQL~~~a~ 153 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKK-KKKKVLLVAADVYRPAAIEQLKTLGE 153 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHh-cCCcEEEEEccccchHHHHHHHHHHh
Confidence 3457899999999999998888766554 2346666654 234456654333
No 415
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=86.00 E-value=7 Score=40.90 Aligned_cols=53 Identities=9% Similarity=0.174 Sum_probs=31.4
Q ss_pred CCCEEEEeCCCcCCCcccHHHHHHHhc-----ccCcEEEEecccCCCChhhHHHHHHhh
Q 006698 232 LPGLFVFDEGHTPRNDDTCMFKALSRI-----KTRRRIILSGTPFQNNFQELENTLSLV 285 (635)
Q Consensus 232 ~~~~vIvDEaH~~kn~~s~~~~~l~~l-----~~~~~l~LTgTP~~n~~~el~~ll~~l 285 (635)
..+.++||.+=+..+ .......+..+ +....+.|+||--.+.+.++...+..+
T Consensus 269 ~~d~VLIDTaGrsqr-d~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~ 326 (420)
T PRK14721 269 GKHMVLIDTVGMSQR-DQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGH 326 (420)
T ss_pred CCCEEEecCCCCCcc-hHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCC
Confidence 468999999743322 22233444444 234568899997666666665554433
No 416
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=85.97 E-value=2 Score=42.01 Aligned_cols=56 Identities=25% Similarity=0.300 Sum_probs=42.4
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhcCC
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID 158 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~~~ 158 (635)
..++..++..++|+|||.-++.++....+. ..|+++|.-...-..-.+.+..+..+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~~~~l~~~~~~~g~d 76 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEESPEELLENARSFGWD 76 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCCHHHHHHHHHHcCCC
Confidence 446778999999999999999999887766 45788888766655555566555443
No 417
>PRK08006 replicative DNA helicase; Provisional
Probab=85.84 E-value=6.4 Score=42.10 Aligned_cols=56 Identities=13% Similarity=0.022 Sum_probs=38.0
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhcCCC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDI 159 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~~~~ 159 (635)
+.=.+||.-+|+|||.-|+.++...... ...+++++..-.-..++..-+.....++
T Consensus 224 G~LiiIaarPgmGKTafalnia~~~a~~-~g~~V~~fSlEM~~~ql~~Rlla~~~~v 279 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENAAML-QDKPVLIFSLEMPGEQIMMRMLASLSRV 279 (471)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCeEEEEeccCCHHHHHHHHHHHhcCC
Confidence 4446999999999999999887665422 2456788887666666666555433333
No 418
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=85.72 E-value=1.9 Score=43.12 Aligned_cols=49 Identities=18% Similarity=0.062 Sum_probs=31.7
Q ss_pred hhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHH
Q 006698 228 ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282 (635)
Q Consensus 228 ~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll 282 (635)
.+...+|++|+.|.- +.....++....+.+.-.+ +|-+.+++.+...-+
T Consensus 200 aLR~~pD~iivGEiR-----~~ea~~~l~a~~tGh~G~~-tTiHa~~~~~ai~Rl 248 (299)
T TIGR02782 200 TLRLRPDRIIVGEVR-----GGEALDLLKAWNTGHPGGI-ATIHANNAKAALDRL 248 (299)
T ss_pred HhcCCCCEEEEeccC-----CHHHHHHHHHHHcCCCCeE-EeeccCCHHHHHHHH
Confidence 456679999999974 2234556666666654222 566778887765543
No 419
>PRK05595 replicative DNA helicase; Provisional
Probab=85.57 E-value=6.1 Score=42.11 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=39.3
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhcCCCccc
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFY 162 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~~~~~v~ 162 (635)
+.=++||..+|+|||..++.++...... ...+++++..-.-..+....+.....+++..
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a~~-~g~~vl~fSlEms~~~l~~R~~a~~~~v~~~ 259 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALR-EGKSVAIFSLEMSKEQLAYKLLCSEANVDML 259 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHHHH-cCCcEEEEecCCCHHHHHHHHHHHhcCCCHH
Confidence 3346889999999999999888654322 2356788887666667666655443344333
No 420
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=85.51 E-value=6 Score=40.01 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=23.2
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHHhC
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMKLH 131 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~~~ 131 (635)
..++..+.|+|||..|.+++..+.-..
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~ 52 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCEN 52 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCC
Confidence 589999999999999999998876443
No 421
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=85.49 E-value=2.5 Score=43.46 Aligned_cols=29 Identities=31% Similarity=0.315 Sum_probs=21.6
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHh
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKL 130 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~ 130 (635)
++..++|..++|+|||..+-.++..+...
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 46778899999999998776666555433
No 422
>PHA02542 41 41 helicase; Provisional
Probab=85.41 E-value=11 Score=40.19 Aligned_cols=46 Identities=9% Similarity=0.010 Sum_probs=33.1
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEF 152 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~ 152 (635)
=+++|..+|+|||..++.++....+ ...+++++.----..|+..-+
T Consensus 192 LiiIaarPgmGKTtfalniA~~~a~--~g~~Vl~fSLEM~~~ql~~Rl 237 (473)
T PHA02542 192 LNVLLAGVNVGKSLGLCSLAADYLQ--QGYNVLYISMEMAEEVIAKRI 237 (473)
T ss_pred EEEEEcCCCccHHHHHHHHHHHHHh--cCCcEEEEeccCCHHHHHHHH
Confidence 3799999999999999998877653 245677776544445555544
No 423
>CHL00206 ycf2 Ycf2; Provisional
Probab=85.37 E-value=2.7 Score=51.44 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=30.9
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHHH
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLTW 148 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qW 148 (635)
..++|++|..++|+|||+.|=|++.. .+-++|-+. ..++..|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~e------s~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATN------SYVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHh------cCCceEEEEHHHHhhcc
Confidence 45789999999999999998888743 233455554 6666665
No 424
>PRK10490 sensor protein KdpD; Provisional
Probab=85.17 E-value=1.9 Score=50.43 Aligned_cols=29 Identities=21% Similarity=0.061 Sum_probs=25.4
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHHhCCC
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPR 133 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~~~~~ 133 (635)
...|+..+|.|||+.++.-+..+.+.|..
T Consensus 26 ~i~~g~~~gvgkt~~ml~~a~~~~~~g~d 54 (895)
T PRK10490 26 KIFFGACAGVGKTYAMLQEAQRLRAQGLD 54 (895)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHHhCCCc
Confidence 67999999999999999999888776654
No 425
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=85.10 E-value=4.6 Score=39.80 Aligned_cols=81 Identities=19% Similarity=0.221 Sum_probs=50.3
Q ss_pred hHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh--CC-CCCcEEEeC
Q 006698 65 DVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL--HP-RCRPVIIAP 141 (635)
Q Consensus 65 ~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~--~~-~~~~LIv~P 141 (635)
+++..|+.|=..++.|--.+.-. .-...++=.+|-.++|+|||-.+=+++..+--+ .. .+..||=.-
T Consensus 149 ~lK~~ll~Ya~s~l~fsek~vnt----------nlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin 218 (423)
T KOG0744|consen 149 NLKERLLSYAASALLFSEKKVNT----------NLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN 218 (423)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCC----------ceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe
Confidence 57888888888777766433211 011124456788899999998777776544221 11 123355554
Q ss_pred -ccchHHHHHHHHHh
Q 006698 142 -RSMLLTWEEEFKKW 155 (635)
Q Consensus 142 -~~l~~qW~~E~~~~ 155 (635)
.++...|..|-.|.
T Consensus 219 shsLFSKWFsESgKl 233 (423)
T KOG0744|consen 219 SHSLFSKWFSESGKL 233 (423)
T ss_pred hhHHHHHHHhhhhhH
Confidence 77888998886553
No 426
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=85.05 E-value=7.4 Score=40.67 Aligned_cols=44 Identities=18% Similarity=0.155 Sum_probs=30.9
Q ss_pred CCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHHHHHHHHHh
Q 006698 112 PGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLTWEEEFKKW 155 (635)
Q Consensus 112 ~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qW~~E~~~~ 155 (635)
-|+|||..-+.=+..+....|..+.+|-|= +.|..+.+.-+.+|
T Consensus 185 AGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~r~lv~~F 229 (660)
T COG3972 185 AGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTMRTLVPEF 229 (660)
T ss_pred cCCCchhHHHHHHHHHhcCCCCceEEEEeehHHHHHHHHHHHHHH
Confidence 599999876666667777788888888887 44545555444444
No 427
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=85.01 E-value=2.2 Score=46.13 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=37.8
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHHHHHHHHHh
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLTWEEEFKKW 155 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qW~~E~~~~ 155 (635)
+..+|+|+..++|.|||..|=+++.. .+..++-++ +.|...|.-|-++.
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne------~~~nFlsvkgpEL~sk~vGeSEr~ 515 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANE------AGMNFLSVKGPELFSKYVGESERA 515 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhh------hcCCeeeccCHHHHHHhcCchHHH
Confidence 45789999999999999998888743 234466666 77888888776664
No 428
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=84.99 E-value=2.8 Score=40.21 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=40.0
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhc
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWG 156 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~ 156 (635)
..+.-+++..++|+|||..+..++....+. ..+++++.=.....+..+.+..+.
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~~~~~~~~~~~~g 76 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENTSKSYLKQMESVK 76 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCCHHHHHHHHHHCC
Confidence 345678999999999999999998765543 446777776666667777776653
No 429
>PRK10689 transcription-repair coupling factor; Provisional
Probab=84.86 E-value=6.6 Score=46.87 Aligned_cols=101 Identities=11% Similarity=0.072 Sum_probs=72.1
Q ss_pred cCccccchHHHHHHHHHh--cCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCC
Q 006698 416 LDPEAGIKTRFLLILLEL--STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQ 493 (635)
Q Consensus 416 ~~~~~s~K~~~l~~~l~~--~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~ 493 (635)
..+..++|........-. ..+.+++|-+..+..+.-+.+.+.+.+... ++.+..++|..+.+++..+++...+ ++
T Consensus 627 ~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~--g~ 703 (1147)
T PRK10689 627 CGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAE--GK 703 (1147)
T ss_pred EcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHh--CC
Confidence 344567888643322211 268899999999988888877777665422 5788889999999999999888876 45
Q ss_pred cEEEEEccCCcccccccccCCeEEEe
Q 006698 494 ARIMLASTKACCEGINLVGASRVVLL 519 (635)
Q Consensus 494 ~~vll~st~~~~~GlnL~~a~~vi~~ 519 (635)
+.|+|.+.......+++.....+|+=
T Consensus 704 ~dIVVgTp~lL~~~v~~~~L~lLVID 729 (1147)
T PRK10689 704 IDILIGTHKLLQSDVKWKDLGLLIVD 729 (1147)
T ss_pred CCEEEECHHHHhCCCCHhhCCEEEEe
Confidence 77888766656556667777777663
No 430
>PRK06321 replicative DNA helicase; Provisional
Probab=84.72 E-value=14 Score=39.53 Aligned_cols=51 Identities=20% Similarity=0.148 Sum_probs=35.5
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKK 154 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~ 154 (635)
+.=.+||.-+|+|||.-++.++...... ...+++++..---..++...+..
T Consensus 226 G~LiiiaarPgmGKTafal~ia~~~a~~-~g~~v~~fSLEMs~~ql~~Rlla 276 (472)
T PRK06321 226 SNLMILAARPAMGKTALALNIAENFCFQ-NRLPVGIFSLEMTVDQLIHRIIC 276 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHh-cCCeEEEEeccCCHHHHHHHHHH
Confidence 3346899999999999998877554322 23567888876666666665543
No 431
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=84.72 E-value=8.3 Score=39.03 Aligned_cols=46 Identities=22% Similarity=0.323 Sum_probs=33.9
Q ss_pred ccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 70 L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
+||+|...-..+.... + .-++.-|+..+.|+|||..|..++..++-
T Consensus 2 ~yPW~~~~w~~l~~~~-~-------------r~~hA~Lf~G~~G~GK~~la~~~a~~llC 47 (325)
T PRK08699 2 IYPWHQEQWRQIAEHW-E-------------RRPNAWLFAGKKGIGKTAFARFAAQALLC 47 (325)
T ss_pred CCCccHHHHHHHHHhc-C-------------CcceEEEeECCCCCCHHHHHHHHHHHHcC
Confidence 4788887766665441 1 12556789999999999999999877754
No 432
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=84.67 E-value=3.3 Score=39.57 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=36.4
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHh
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~ 155 (635)
.+.-.+++.++|+|||..+..++....+. ..+++++.-.....+..+....+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccCCHHHHHHHHHHh
Confidence 35567899999999999999887665543 34677777655555555555544
No 433
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=84.54 E-value=4.9 Score=34.02 Aligned_cols=85 Identities=21% Similarity=0.248 Sum_probs=50.8
Q ss_pred hHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCc------EE
Q 006698 65 DVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP------VI 138 (635)
Q Consensus 65 ~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~------LI 138 (635)
.+...|+- |--|++-+++.+.+- +.. .++.++=-.-+-..+|+|||.++=.++..+++.+-..+. ..
T Consensus 22 ~L~~~l~G-Qhla~~~v~~ai~~~-----l~~-~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~ 94 (127)
T PF06309_consen 22 DLQRNLFG-QHLAVEVVVNAIKGH-----LAN-PNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATH 94 (127)
T ss_pred HHHHHccC-cHHHHHHHHHHHHHH-----HcC-CCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccc
Confidence 45555554 555555554443321 111 123332223367899999999999999888877655443 23
Q ss_pred EeC-ccchHHHHHHHHHhc
Q 006698 139 IAP-RSMLLTWEEEFKKWG 156 (635)
Q Consensus 139 v~P-~~l~~qW~~E~~~~~ 156 (635)
-.| ..-+.+.+.++..|.
T Consensus 95 hFP~~~~v~~Yk~~L~~~I 113 (127)
T PF06309_consen 95 HFPHNSNVDEYKEQLKSWI 113 (127)
T ss_pred cCCCchHHHHHHHHHHHHH
Confidence 345 566677888888774
No 434
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=84.53 E-value=8.7 Score=43.25 Aligned_cols=50 Identities=12% Similarity=0.003 Sum_probs=29.8
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-cc---chHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RS---MLLTWEEEFK 153 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~---l~~qW~~E~~ 153 (635)
+-..+..+.|.|||.++.-++..+......+++.+|.- .. ..+||+.-.+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~ 239 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGR 239 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHH
Confidence 34579999999999777666655533333335555554 22 3466654333
No 435
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=84.42 E-value=2.4 Score=40.04 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=22.9
Q ss_pred CCCCCceEEeCCCCchHHHHHHHHHHH
Q 006698 100 TGGGNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 100 ~~~~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
.+.++|+++..++|+|||+.+-+++..
T Consensus 186 idpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 186 IDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred CCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 467899999999999999888887743
No 436
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.06 E-value=10 Score=42.11 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=20.8
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
.+..|+..+.|.|||..|..++..+.
T Consensus 39 ~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 39 AHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 34578999999999998888776653
No 437
>PHA00350 putative assembly protein
Probab=84.02 E-value=2.6 Score=43.50 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=17.2
Q ss_pred EEeCCCCchHHHHHHHH-HHHHHHhC
Q 006698 107 IISHAPGTGKTGLTLVF-LQAYMKLH 131 (635)
Q Consensus 107 iLad~~GlGKT~~ai~~-i~~~~~~~ 131 (635)
++-..+|+|||+.|+.. +...++.+
T Consensus 5 l~tG~pGSGKT~~aV~~~i~palk~G 30 (399)
T PHA00350 5 AIVGRPGSYKSYEAVVYHIIPALKDG 30 (399)
T ss_pred EEecCCCCchhHHHHHHHHHHHHHCC
Confidence 55667899999999974 44444433
No 438
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=84.01 E-value=3 Score=46.59 Aligned_cols=124 Identities=17% Similarity=0.186 Sum_probs=91.8
Q ss_pred EEeCCcHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc--C
Q 006698 358 VILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS--T 435 (635)
Q Consensus 358 v~~~~s~~q~~~y~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~--~ 435 (635)
....+++.|...++.+.... -+.++.++.+ ...|+|.+...+++... .
T Consensus 195 ~~~~Ln~~Q~~a~~~i~~~~-----------~~~~~~Ll~G-------------------vTGSGKTEvYl~~i~~~L~~ 244 (730)
T COG1198 195 EWLALNQEQQAAVEAILSSL-----------GGFAPFLLDG-------------------VTGSGKTEVYLEAIAKVLAQ 244 (730)
T ss_pred cccccCHHHHHHHHHHHHhc-----------ccccceeEeC-------------------CCCCcHHHHHHHHHHHHHHc
Confidence 34578888888888875430 1233433322 45689999999999887 8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCe
Q 006698 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515 (635)
Q Consensus 436 ~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~ 515 (635)
|+.+||-.........+...|..+| |.++..+|++.++.+|.+.-.+..+ |+++|+|. |+.+= =.-+.+...
T Consensus 245 GkqvLvLVPEI~Ltpq~~~rf~~rF----g~~v~vlHS~Ls~~er~~~W~~~~~--G~~~vVIG-tRSAl-F~Pf~~LGL 316 (730)
T COG1198 245 GKQVLVLVPEIALTPQLLARFKARF----GAKVAVLHSGLSPGERYRVWRRARR--GEARVVIG-TRSAL-FLPFKNLGL 316 (730)
T ss_pred CCEEEEEeccccchHHHHHHHHHHh----CCChhhhcccCChHHHHHHHHHHhc--CCceEEEE-echhh-cCchhhccE
Confidence 9999999999998888899999998 7899999999999999999988887 67888886 44321 112334455
Q ss_pred EEEe
Q 006698 516 VVLL 519 (635)
Q Consensus 516 vi~~ 519 (635)
||+-
T Consensus 317 IIvD 320 (730)
T COG1198 317 IIVD 320 (730)
T ss_pred EEEe
Confidence 5553
No 439
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=83.85 E-value=8.8 Score=48.62 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=41.9
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccch
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSML 145 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~ 145 (635)
.|-+-|++++..++.. ..+-++|-...|+|||.++-+++..+... ..++++++|..-.
T Consensus 429 ~Ls~~Q~~Av~~il~s-----------------~~~v~ii~G~aGTGKTt~l~~l~~~~~~~--G~~V~~lAPTgrA 486 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTS-----------------TKRFIIINGFGGTGSTEIAQLLLHLASEQ--GYEIQIITAGSLS 486 (1960)
T ss_pred CCCHHHHHHHHHHHhC-----------------CCCeEEEEECCCCCHHHHHHHHHHHHHhc--CCeEEEEeCCHHH
Confidence 5889999999887652 24567889999999997766665444332 3578899996544
No 440
>PRK04328 hypothetical protein; Provisional
Probab=83.84 E-value=3.3 Score=40.17 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=36.3
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhc
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWG 156 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~ 156 (635)
.+.-.+++.++|+|||..++.++....+. ..++++|.=-.-..+-.+.+..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCCHHHHHHHHHHcC
Confidence 35567889999999999999998775544 346677765444444445555543
No 441
>PRK14873 primosome assembly protein PriA; Provisional
Probab=83.47 E-value=5.2 Score=44.64 Aligned_cols=95 Identities=15% Similarity=0.090 Sum_probs=73.7
Q ss_pred ccchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEE
Q 006698 420 AGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497 (635)
Q Consensus 420 ~s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vl 497 (635)
.|+|.+...+++... .|+.+||-.--......+.+.|...|+ +..+.++|++.+..+|.+...+..+ |+.+|+
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~~~--G~~~IV 244 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAVLR--GQARVV 244 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHHhC--CCCcEE
Confidence 478999999999877 788999999999999999999999883 3679999999999999988888876 667887
Q ss_pred EEccCCcccccccccCCeEEEeCC
Q 006698 498 LASTKACCEGINLVGASRVVLLDV 521 (635)
Q Consensus 498 l~st~~~~~GlnL~~a~~vi~~d~ 521 (635)
|. |+++- =.-+.+-..||+-|-
T Consensus 245 iG-tRSAv-FaP~~~LgLIIvdEE 266 (665)
T PRK14873 245 VG-TRSAV-FAPVEDLGLVAIWDD 266 (665)
T ss_pred EE-cceeE-EeccCCCCEEEEEcC
Confidence 75 55532 122334555665543
No 442
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=83.42 E-value=9.7 Score=48.29 Aligned_cols=62 Identities=13% Similarity=0.189 Sum_probs=40.9
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh--CCCCCcEEEeCccch
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL--HPRCRPVIIAPRSML 145 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~--~~~~~~LIv~P~~l~ 145 (635)
..|-+-|++|+..++.. ..+-++|-...|+|||.+..+++..+... ....+++.++|.+-.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~-----------------~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~A 1080 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIIST-----------------KDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEA 1080 (1960)
T ss_pred CCCCHHHHHHHHHHHhC-----------------CCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHH
Confidence 46899999999987642 23466888899999997774443333221 123456778896544
Q ss_pred H
Q 006698 146 L 146 (635)
Q Consensus 146 ~ 146 (635)
.
T Consensus 1081 a 1081 (1960)
T TIGR02760 1081 V 1081 (1960)
T ss_pred H
Confidence 3
No 443
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=83.24 E-value=1.5 Score=42.28 Aligned_cols=47 Identities=34% Similarity=0.542 Sum_probs=31.7
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHH
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKK 154 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~ 154 (635)
.++.++||.++|+|||..|+++...+ ++. .=.||-.--+-+-.|+++
T Consensus 63 aGravLlaGppgtGKTAlAlaisqEL---G~k---vPFcpmvgSEvyS~EvKK 109 (456)
T KOG1942|consen 63 AGRAVLLAGPPGTGKTALALAISQEL---GPK---VPFCPMVGSEVYSNEVKK 109 (456)
T ss_pred cCcEEEEecCCCCchhHHHHHHHHHh---CCC---CCcccccchhhhhhhhhH
Confidence 37889999999999999999988665 333 234663333344455544
No 444
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=83.18 E-value=28 Score=35.82 Aligned_cols=51 Identities=14% Similarity=0.048 Sum_probs=33.9
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC----ccchHHHHHHHHH
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP----RSMLLTWEEEFKK 154 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P----~~l~~qW~~E~~~ 154 (635)
.+.-.+++.+.|+|||-++..++..+...+ .++.+|+- ...+.||+.-...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~ 259 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADK 259 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhc
Confidence 355667899999999988888776654433 45655554 2346788765443
No 445
>PRK09354 recA recombinase A; Provisional
Probab=83.13 E-value=5.1 Score=40.66 Aligned_cols=43 Identities=23% Similarity=0.163 Sum_probs=32.2
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLT 147 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~q 147 (635)
++-..++.+.|+|||..++.++....+. .+++++|-.-....+
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHH
Confidence 4456799999999999999988776544 456788877555543
No 446
>PRK09087 hypothetical protein; Validated
Probab=83.08 E-value=5.8 Score=37.84 Aligned_cols=36 Identities=11% Similarity=0.352 Sum_probs=24.7
Q ss_pred CEEEEeCCCcCCCcccHHHHHHHhc-ccCcEEEEecc
Q 006698 234 GLFVFDEGHTPRNDDTCMFKALSRI-KTRRRIILSGT 269 (635)
Q Consensus 234 ~~vIvDEaH~~kn~~s~~~~~l~~l-~~~~~l~LTgT 269 (635)
++|++|+.|.+.......+..+..+ .....+++|++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~ 125 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSR 125 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECC
Confidence 5799999998854444455555555 44567888887
No 447
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=82.72 E-value=6.2 Score=39.84 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=21.6
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
++.-++..+-|.|||..|..++..++
T Consensus 26 ~ha~Lf~G~~G~Gk~~la~~~a~~l~ 51 (313)
T PRK05564 26 SHAHIIVGEDGIGKSLLAKEIALKIL 51 (313)
T ss_pred CceEEeECCCCCCHHHHHHHHHHHHc
Confidence 34558999999999999999987664
No 448
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=82.67 E-value=4.2 Score=42.61 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=31.2
Q ss_pred eEEeCCCCchHHHHHHHHHHHHHHhC-CCCCcEEEeC--ccchHHHHHHHHH
Q 006698 106 CIISHAPGTGKTGLTLVFLQAYMKLH-PRCRPVIIAP--RSMLLTWEEEFKK 154 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~~~~~-~~~~~LIv~P--~~l~~qW~~E~~~ 154 (635)
.++....|+|||..++..+....... +..+.|++.| .++..+-..++..
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~ 55 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIEN 55 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHH
Confidence 35666789999988876655544443 5556788888 4455554555543
No 449
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=82.60 E-value=23 Score=38.15 Aligned_cols=39 Identities=13% Similarity=0.005 Sum_probs=24.9
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCc--EEEeC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP--VIIAP 141 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~--LIv~P 141 (635)
.+.++|.-+=|-|||..+.+++.+.+-..+.... +++++
T Consensus 22 f~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~ 62 (477)
T PF03354_consen 22 FREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAAN 62 (477)
T ss_pred EEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeC
Confidence 5568888899999998777766554433332233 44444
No 450
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=82.51 E-value=2.8 Score=41.02 Aligned_cols=42 Identities=19% Similarity=0.224 Sum_probs=31.6
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
.+.+.|.+.+.++... ..+.++++.++|+|||-+.-+++..+
T Consensus 63 g~~~~~~~~l~~~~~~-----------------~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 63 GLKPENLEIFRKLLEK-----------------PHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred CCCHHHHHHHHHHHhc-----------------CCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 4678888888777643 13357999999999998877776554
No 451
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.35 E-value=2.3 Score=42.79 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=35.6
Q ss_pred hhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHh
Q 006698 228 ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSL 284 (635)
Q Consensus 228 ~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~ 284 (635)
.+...+|++|++|.+- ...+..++.+.+.| .-=+|....++.+++..+..
T Consensus 213 alR~rPd~IivgEvrg-----~e~~~~~~a~~tGh--~~isT~ha~s~~~~~~rl~~ 262 (312)
T COG0630 213 ALRQRPDYIIVGELRG-----REAFVLFQAMQTGH--GTISTIHADSPELVLDRLTE 262 (312)
T ss_pred HHhcCCCeEEEeeeec-----HHHHHHHHHHhcCC--CceeEEecCCHHHHHHHHhh
Confidence 4556799999999973 33455666666777 55578888888888776653
No 452
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=81.97 E-value=13 Score=39.69 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=24.1
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA 140 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~ 140 (635)
+-..|..+.|.|||.++..++..+.......++.+|.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~ 293 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLT 293 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 3457889999999988777776554433333454443
No 453
>PRK07773 replicative DNA helicase; Validated
Probab=81.92 E-value=13 Score=43.36 Aligned_cols=55 Identities=18% Similarity=0.096 Sum_probs=38.1
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhcCCC
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDI 159 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~~~~ 159 (635)
.=.+||..+|+|||..|+.++...... ...+++++.--.-..|....+.....++
T Consensus 218 ~livIagrPg~GKT~fal~ia~~~a~~-~~~~V~~fSlEms~~ql~~R~~s~~~~i 272 (886)
T PRK07773 218 QLIIVAARPSMGKTTFGLDFARNCAIR-HRLAVAIFSLEMSKEQLVMRLLSAEAKI 272 (886)
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHh-cCCeEEEEecCCCHHHHHHHHHHHhcCC
Confidence 347999999999999999988765433 2346788877555566666655443333
No 454
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=81.80 E-value=0.83 Score=41.35 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=21.5
Q ss_pred CCCEEEEeCCCcCCCcccHHHHHHHhc-ccCcEEEEeccc
Q 006698 232 LPGLFVFDEGHTPRNDDTCMFKALSRI-KTRRRIILSGTP 270 (635)
Q Consensus 232 ~~~~vIvDEaH~~kn~~s~~~~~l~~l-~~~~~l~LTgTP 270 (635)
..|++|||||=-+ -.-.+.++ ....++++|.|-
T Consensus 90 ~~DlliVDEAAaI------p~p~L~~ll~~~~~vv~stTi 123 (177)
T PF05127_consen 90 QADLLIVDEAAAI------PLPLLKQLLRRFPRVVFSTTI 123 (177)
T ss_dssp --SCEEECTGGGS-------HHHHHHHHCCSSEEEEEEEB
T ss_pred CCCEEEEechhcC------CHHHHHHHHhhCCEEEEEeec
Confidence 3599999999765 22233333 567788888885
No 455
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=81.50 E-value=2.5 Score=45.76 Aligned_cols=49 Identities=14% Similarity=0.202 Sum_probs=39.3
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~ 131 (635)
-++|+-|.+-.+-+++.+.. ++-||+-.++|+|||+..|+....+++..
T Consensus 14 y~PYdIQ~~lM~elyrvLe~---------------GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEE---------------GKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CCchhHHHHHHHHHHHHHhc---------------CCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 46788899888888777654 56899999999999999887777777643
No 456
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=81.28 E-value=6.1 Score=40.70 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=40.5
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCC
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPR 133 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~ 133 (635)
.-|.-|.+.+...+.....| ..+.++++...+|+|||.++--++..+....+.
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~------------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~ 72 (366)
T COG1474 20 PHREEEINQLASFLAPALRG------------ERPSNIIIYGPTGTGKTATVKFVMEELEESSAN 72 (366)
T ss_pred cccHHHHHHHHHHHHHHhcC------------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhcc
Confidence 47888888888777766543 235579999999999999998888777665444
No 457
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=81.00 E-value=18 Score=36.96 Aligned_cols=49 Identities=20% Similarity=0.137 Sum_probs=33.6
Q ss_pred hhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHH
Q 006698 228 ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTL 282 (635)
Q Consensus 228 ~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll 282 (635)
.+...+|+||+.|.- +......+..+.+.|.-.+ +|-+.|++.+...-+
T Consensus 249 aLR~~PD~IivGEiR-----g~Ea~~~l~a~~tGh~G~~-tTiHA~s~~~~~~RL 297 (340)
T TIGR03819 249 ALRMRPDRIVVGEVR-----GAEVVDLLAALNTGHDGGA-GTLHANSPADVPARL 297 (340)
T ss_pred HhccCCCeEEEeCcC-----cHHHHHHHHHHHcCCCceE-EeeCCCCHHHHHHHH
Confidence 455679999999974 2334566666666665333 777889988876544
No 458
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=80.91 E-value=8.1 Score=37.76 Aligned_cols=39 Identities=31% Similarity=0.379 Sum_probs=27.5
Q ss_pred ccCCCEEEEeCCCcCCCcccHHHHHHHhc--ccCcEEEEecccC
Q 006698 230 LDLPGLFVFDEGHTPRNDDTCMFKALSRI--KTRRRIILSGTPF 271 (635)
Q Consensus 230 ~~~~~~vIvDEaH~~kn~~s~~~~~l~~l--~~~~~l~LTgTP~ 271 (635)
.....++++|||.++. ......++.+ +..--+.|.|+|.
T Consensus 163 ~~~~~~iivDEA~~L~---~~ale~lr~i~d~~Gi~~vLvG~pr 203 (297)
T COG2842 163 RDTVRLIIVDEADRLP---YRALEELRRIHDKTGIGVVLVGMPR 203 (297)
T ss_pred ccCcceeeeehhhccC---hHHHHHHHHHHHhhCceEEEecChH
Confidence 4456899999999884 3345555555 4555688899994
No 459
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=80.57 E-value=23 Score=38.87 Aligned_cols=92 Identities=15% Similarity=0.150 Sum_probs=64.7
Q ss_pred cchH-HHHHHHHHhc-CCCeEEEEcCChh----HHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCc
Q 006698 421 GIKT-RFLLILLELS-TNEKVLVFSQYIE----PLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494 (635)
Q Consensus 421 s~K~-~~l~~~l~~~-~~~kviIFs~~~~----~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~ 494 (635)
|+|. -++..++... .|.++......-- ..+-+.++|... |+.+..++|+++.++|.++++.-.+ |.+
T Consensus 294 SGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~-----~i~V~lLtG~~kgk~r~~~l~~l~~--G~~ 366 (677)
T COG1200 294 SGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPL-----GIRVALLTGSLKGKARKEILEQLAS--GEI 366 (677)
T ss_pred CCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhc-----CCeEEEeecccchhHHHHHHHHHhC--CCC
Confidence 4554 3455555555 7777777766532 334455666554 8999999999999999999999987 668
Q ss_pred EEEEEccCCcccccccccCCeEEEe
Q 006698 495 RIMLASTKACCEGINLVGASRVVLL 519 (635)
Q Consensus 495 ~vll~st~~~~~GlnL~~a~~vi~~ 519 (635)
.++|.+-...-+.++..+.-.||+=
T Consensus 367 ~ivVGTHALiQd~V~F~~LgLVIiD 391 (677)
T COG1200 367 DIVVGTHALIQDKVEFHNLGLVIID 391 (677)
T ss_pred CEEEEcchhhhcceeecceeEEEEe
Confidence 8888644446667777777666653
No 460
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=79.96 E-value=1.6 Score=44.23 Aligned_cols=50 Identities=14% Similarity=0.016 Sum_probs=39.5
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHh
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~ 155 (635)
..+.+++|-.++|+|||++|=+++..+ ..++++|-...+...|.-|-++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el-----g~~~i~vsa~eL~sk~vGEsEk~ 195 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM-----GIEPIVMSAGELESENAGEPGKL 195 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc-----CCCeEEEEHHHhhcCcCCcHHHH
Confidence 457899999999999999998888664 33556666688888888776654
No 461
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=79.64 E-value=11 Score=38.32 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=30.1
Q ss_pred cCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEeccc
Q 006698 231 DLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTP 270 (635)
Q Consensus 231 ~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP 270 (635)
..+.++|+|=-+.++......+...+...+.+.++.-.+|
T Consensus 125 srpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~ld~p 164 (340)
T TIGR03575 125 SRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCP 164 (340)
T ss_pred hCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEEEeCC
Confidence 3467899999998877666666666776777777777777
No 462
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=79.31 E-value=9.2 Score=41.18 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=22.5
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHHH
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
...+|+||-.++|.|||..|=+++-++
T Consensus 221 ~PprGvLlHGPPGCGKT~lA~AiAgel 247 (802)
T KOG0733|consen 221 RPPRGVLLHGPPGCGKTSLANAIAGEL 247 (802)
T ss_pred CCCCceeeeCCCCccHHHHHHHHhhhc
Confidence 457899999999999999888877443
No 463
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=79.29 E-value=2.9 Score=40.89 Aligned_cols=37 Identities=14% Similarity=0.020 Sum_probs=28.7
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
+.-.+++.++|+|||..++.++....+. ..+++++.-
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~ 72 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTV 72 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEe
Confidence 4557889999999999999988765543 347788873
No 464
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=78.84 E-value=5.8 Score=44.43 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=20.0
Q ss_pred CCceEEeCCCCchHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
.+|++|..++|+|||..+-+++..
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~ 208 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGE 208 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999888777643
No 465
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=78.83 E-value=14 Score=38.75 Aligned_cols=53 Identities=21% Similarity=0.147 Sum_probs=40.0
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhc
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWG 156 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~ 156 (635)
+.-.|+|.-+|+|||.-|+.++..... ...+++.|..--....||..-+-...
T Consensus 196 ~dLii~AaRP~mGKTafalnia~n~a~-~~~~~v~iFSLEM~~eql~~R~Ls~~ 248 (435)
T COG0305 196 GDLIIVAARPGMGKTALALNIALNAAA-DGRKPVAIFSLEMSEEQLVMRLLSSE 248 (435)
T ss_pred CCEEEEccCCCCChHHHHHHHHHHHHH-hcCCCeEEEEccCCHHHHHHHhhccc
Confidence 556799999999999999988866554 33456677777777788887776543
No 466
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=78.73 E-value=3.2 Score=41.08 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=27.4
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
++-.+++.++|+|||.++..++..+.......++.+|.-
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~ 232 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITT 232 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 456788999999999988888766655422345655554
No 467
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=78.67 E-value=10 Score=37.49 Aligned_cols=53 Identities=23% Similarity=0.243 Sum_probs=30.9
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHH---h-----CCCCCcEEEe----CccchHHHHHHHHHh
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMK---L-----HPRCRPVIIA----PRSMLLTWEEEFKKW 155 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~---~-----~~~~~~LIv~----P~~l~~qW~~E~~~~ 155 (635)
+-+.||+.+-|+|||..+|-+...+-. . ...+++|+|. |..++..-..-...+
T Consensus 89 g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~m 153 (402)
T COG3598 89 GYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARM 153 (402)
T ss_pred CeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHc
Confidence 557899999999999776644332211 1 1234566664 355555544444444
No 468
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=78.62 E-value=14 Score=40.70 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=32.4
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHHHHHHHHHh
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLTWEEEFKKW 155 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qW~~E~~~~ 155 (635)
-.++.-+=|-|||..+..++..+... ...++++.+| .+....-.+++++.
T Consensus 189 ~tV~taPRqrGKS~iVgi~l~~La~f-~Gi~IlvTAH~~~ts~evF~rv~~~ 239 (752)
T PHA03333 189 YTAATVPRRCGKTTIMAIILAAMISF-LEIDIVVQAQRKTMCLTLYNRVETV 239 (752)
T ss_pred ceEEEeccCCCcHHHHHHHHHHHHHh-cCCeEEEECCChhhHHHHHHHHHHH
Confidence 44566667999997776565555432 2357899999 55655555555554
No 469
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=78.59 E-value=1.7 Score=42.01 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=23.1
Q ss_pred CCCCCCceEEeCCCCchHHHHHHHHHH
Q 006698 99 STGGGNGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 99 ~~~~~~g~iLad~~GlGKT~~ai~~i~ 125 (635)
....++|+||..++|+|||+.|=|++.
T Consensus 215 GikpPKGVIlyG~PGTGKTLLAKAVAN 241 (440)
T KOG0726|consen 215 GIKPPKGVILYGEPGTGKTLLAKAVAN 241 (440)
T ss_pred CCCCCCeeEEeCCCCCchhHHHHHHhc
Confidence 345688999999999999999888774
No 470
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=78.59 E-value=4.4 Score=41.87 Aligned_cols=62 Identities=19% Similarity=0.286 Sum_probs=45.3
Q ss_pred ccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchH
Q 006698 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLL 146 (635)
Q Consensus 70 L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~ 146 (635)
|-+-|++++..+++++.. ..+....|..+-|+|||...=++...+.. ....+++++|..+-.
T Consensus 2 Ln~eQ~~~~~~v~~~~~~-------------~~~~~~fv~G~~GtGKs~l~~~i~~~~~~--~~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIEN-------------EEGLNFFVTGPAGTGKSFLIKAIIDYLRS--RGKKVLVTAPTGIAA 63 (364)
T ss_pred CCHHHHHHHHHHHHHHHc-------------cCCcEEEEEcCCCCChhHHHHHHHHHhcc--ccceEEEecchHHHH
Confidence 567899999999777542 23668899999999999886666654432 234678899966553
No 471
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=78.24 E-value=3.3 Score=43.58 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=34.0
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
.-+.|+|...+..+++.. .+=.++..++|+|||.+..+++..+.
T Consensus 240 Lg~~~~~~~~~~~~~~~p-----------------~GliLvTGPTGSGKTTTLY~~L~~ln 283 (500)
T COG2804 240 LGMSPFQLARLLRLLNRP-----------------QGLILVTGPTGSGKTTTLYAALSELN 283 (500)
T ss_pred hCCCHHHHHHHHHHHhCC-----------------CeEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 346899999988887753 22458899999999999888886553
No 472
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=78.22 E-value=5.8 Score=42.74 Aligned_cols=57 Identities=21% Similarity=0.227 Sum_probs=42.5
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhcCC
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID 158 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~~~ 158 (635)
..++-.+|..++|+|||..|+.++..-.... ..++|+|+--.-..++.+.+..+..+
T Consensus 19 p~g~~~Li~G~pGsGKT~la~qfl~~g~~~~-ge~~lyvs~eE~~~~l~~~~~~~G~~ 75 (484)
T TIGR02655 19 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIHF-DEPGVFVTFEESPQDIIKNARSFGWD 75 (484)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEEecCHHHHHHHHHHcCCC
Confidence 3466789999999999999999987654432 24678888766667777777776543
No 473
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=77.85 E-value=3.8 Score=41.18 Aligned_cols=49 Identities=22% Similarity=0.318 Sum_probs=36.3
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHh
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~ 155 (635)
...|.+|-+++|+|||+.|-+++... ..+++=|-=..+...|..|-+|.
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akea-----ga~fInv~~s~lt~KWfgE~eKl 174 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEA-----GANFINVSVSNLTSKWFGEAQKL 174 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHc-----CCCcceeeccccchhhHHHHHHH
Confidence 57899999999999999998887432 22333333366667999888875
No 474
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=77.76 E-value=8.2 Score=36.87 Aligned_cols=60 Identities=25% Similarity=0.291 Sum_probs=43.8
Q ss_pred cHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccch
Q 006698 71 FPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSML 145 (635)
Q Consensus 71 ~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~ 145 (635)
+..|++.+.-=..++..| .+.++++|-.+-|+|||-.+-+++..+...+-. ||=+++.-+
T Consensus 32 ie~Qk~~l~~Nt~~Fl~G------------~pannvLL~G~rGtGKSSlVkall~~y~~~GLR---lIev~k~~L 91 (249)
T PF05673_consen 32 IERQKEALIENTEQFLQG------------LPANNVLLWGARGTGKSSLVKALLNEYADQGLR---LIEVSKEDL 91 (249)
T ss_pred HHHHHHHHHHHHHHHHcC------------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCce---EEEECHHHh
Confidence 467777776555555554 347799999999999998888888777665533 777775544
No 475
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=77.00 E-value=1.8 Score=47.94 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=20.7
Q ss_pred CCceEEeCCCCchHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFL 124 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i 124 (635)
++|+||..++|+|||+.|-|++
T Consensus 344 PkGvLL~GPPGTGKTLLAKAiA 365 (774)
T KOG0731|consen 344 PKGVLLVGPPGTGKTLLAKAIA 365 (774)
T ss_pred cCceEEECCCCCcHHHHHHHHh
Confidence 7899999999999999998887
No 476
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=76.77 E-value=6.6 Score=37.14 Aligned_cols=39 Identities=28% Similarity=0.438 Sum_probs=27.2
Q ss_pred CchHHHHHHHHHHHHHHhCCCCCc-EEEe-CccchHHHHHHHH
Q 006698 113 GTGKTGLTLVFLQAYMKLHPRCRP-VIIA-PRSMLLTWEEEFK 153 (635)
Q Consensus 113 GlGKT~~ai~~i~~~~~~~~~~~~-LIv~-P~~l~~qW~~E~~ 153 (635)
|.|||-.+++++..+.+.+. ++ ||=| |+.-+..|.+-..
T Consensus 12 GaGKTT~~~~LAs~la~~G~--~V~lIDaDpn~pl~~W~~~a~ 52 (231)
T PF07015_consen 12 GAGKTTAAMALASELAARGA--RVALIDADPNQPLAKWAENAQ 52 (231)
T ss_pred CCcHHHHHHHHHHHHHHCCC--eEEEEeCCCCCcHHHHHHhcc
Confidence 99999888888877765543 44 4444 6777789976544
No 477
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=76.64 E-value=2.9 Score=39.70 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=22.8
Q ss_pred CCCCCceEEeCCCCchHHHHHHHHHHH
Q 006698 100 TGGGNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 100 ~~~~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
...++|+++..++|+|||++|-+.+..
T Consensus 202 i~pPKGvLmYGPPGTGKTlmARAcAaq 228 (424)
T KOG0652|consen 202 IRPPKGVLMYGPPGTGKTLMARACAAQ 228 (424)
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHHh
Confidence 345789999999999999999887754
No 478
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=76.23 E-value=4 Score=40.86 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=23.0
Q ss_pred CEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEeccc
Q 006698 234 GLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTP 270 (635)
Q Consensus 234 ~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP 270 (635)
.++.+||.|++. ++++--.+-.+...-+++.-||-
T Consensus 224 TilFiDEiHRFN--ksQQD~fLP~VE~G~I~lIGATT 258 (554)
T KOG2028|consen 224 TILFIDEIHRFN--KSQQDTFLPHVENGDITLIGATT 258 (554)
T ss_pred eEEEeHHhhhhh--hhhhhcccceeccCceEEEeccc
Confidence 579999999984 34444444444555667777775
No 479
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=76.13 E-value=7.3 Score=41.11 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=29.3
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHH
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTW 148 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW 148 (635)
..+.|++|..++|+|||..|=+++..+ ..+.+-|....+...|
T Consensus 215 ~~p~gVLL~GPPGTGKT~LAraIA~el-----~~~fi~V~~seL~~k~ 257 (438)
T PTZ00361 215 KPPKGVILYGPPGTGKTLLAKAVANET-----SATFLRVVGSELIQKY 257 (438)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh-----CCCEEEEecchhhhhh
Confidence 456799999999999999888877543 2233444445554444
No 480
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=76.10 E-value=4.4 Score=44.51 Aligned_cols=67 Identities=15% Similarity=0.061 Sum_probs=52.2
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCC----CCCcEEEeC-cc
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP----RCRPVIIAP-RS 143 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~----~~~~LIv~P-~~ 143 (635)
.|-.-|+.|...++.. .-.|+-.++|+|||++++-++..++.... .-|.||+|- ++
T Consensus 378 ildsSq~~A~qs~lty-------------------elsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnh 438 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSKLTY-------------------ELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNH 438 (1025)
T ss_pred eecHHHHHHHHHHhhh-------------------hhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhH
Confidence 3666899999888653 35599999999999999988888776542 246699998 88
Q ss_pred chHHHHHHHHH
Q 006698 144 MLLTWEEEFKK 154 (635)
Q Consensus 144 l~~qW~~E~~~ 154 (635)
.+.|.-.-+-.
T Consensus 439 avdq~ligiy~ 449 (1025)
T KOG1807|consen 439 AVDQYLIGIYY 449 (1025)
T ss_pred HHHHHHHHHHh
Confidence 88988777664
No 481
>CHL00195 ycf46 Ycf46; Provisional
Probab=75.18 E-value=3.1 Score=44.53 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=22.4
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHHH
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
..++|.+|..++|+|||..|=+++..+
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 346799999999999999988877543
No 482
>PF12846 AAA_10: AAA-like domain
Probab=74.74 E-value=6.2 Score=39.31 Aligned_cols=43 Identities=26% Similarity=0.311 Sum_probs=29.7
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTW 148 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW 148 (635)
+.+++...+|+|||..+..++......+ .+++|+=|..-...|
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g--~~~~i~D~~g~~~~~ 44 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRRG--PRVVIFDPKGDYSPL 44 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHcC--CCEEEEcCCchHHHH
Confidence 3679999999999988887777666554 345566555333333
No 483
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=74.68 E-value=13 Score=43.08 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhhC---CcccccccccCCCCCCCc-eEEeCCCCchHHHHHHHHHHHHH
Q 006698 73 HQREGFEFIWKNIAG---GIDLDELKNSTSTGGGNG-CIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 73 ~Q~~~v~~l~~~~~~---~~~~~~~~~~~~~~~~~g-~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
-|-+++..+.+.+.. |+ ..+.++.| .++..++|+|||..|-++...+.
T Consensus 570 GQ~~Av~~v~~~i~~~~~gl--------~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 570 GQDHALEAIAERIRTARAGL--------EDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred ChHHHHHHHHHHHHHHhcCC--------CCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 466777766555432 21 12233444 69999999999999988876654
No 484
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=74.64 E-value=2.4 Score=35.97 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=15.8
Q ss_pred eEEeCCCCchHHHHHHHHHHHH
Q 006698 106 CIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~ 127 (635)
++|-+.+|+|||..+-+++..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~ 23 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL 23 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT
T ss_pred EeeECCCccHHHHHHHHHHHHc
Confidence 5889999999999988887654
No 485
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=74.56 E-value=11 Score=38.39 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=21.7
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
.+..+|+.++|+|||..|-+++..+-.
T Consensus 78 r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 78 KQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 456799999999999888887766543
No 486
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=74.55 E-value=4.1 Score=43.72 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=31.8
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCc-eEEeCCCCchHHHHHHHHHHHH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNG-CIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g-~iLad~~GlGKT~~ai~~i~~~ 127 (635)
..+-|.|.+.+.++... .+| ++++.++|+|||.+.-+++..+
T Consensus 224 Lg~~~~~~~~l~~~~~~------------------~~GlilitGptGSGKTTtL~a~L~~l 266 (486)
T TIGR02533 224 LGMSPELLSRFERLIRR------------------PHGIILVTGPTGSGKTTTLYAALSRL 266 (486)
T ss_pred cCCCHHHHHHHHHHHhc------------------CCCEEEEEcCCCCCHHHHHHHHHhcc
Confidence 34788899998888653 334 6899999999998776666443
No 487
>PRK10436 hypothetical protein; Provisional
Probab=74.19 E-value=5.2 Score=42.54 Aligned_cols=42 Identities=24% Similarity=0.232 Sum_probs=32.0
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
.+-|.|.+.+..+.... .+-.+++.+||+|||-+..+++..+
T Consensus 201 G~~~~~~~~l~~~~~~~-----------------~GliLvtGpTGSGKTTtL~a~l~~~ 242 (462)
T PRK10436 201 GMTPAQLAQFRQALQQP-----------------QGLILVTGPTGSGKTVTLYSALQTL 242 (462)
T ss_pred CcCHHHHHHHHHHHHhc-----------------CCeEEEECCCCCChHHHHHHHHHhh
Confidence 47788888888877542 3467899999999998777766543
No 488
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=73.72 E-value=4.6 Score=38.14 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=35.0
Q ss_pred CCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHHHHHHHHH
Q 006698 99 STGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLTWEEEFKK 154 (635)
Q Consensus 99 ~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qW~~E~~~ 154 (635)
....++|++|..++|+|||+.|-++++.. . ..+|=+. ..|+..+.-|-.+
T Consensus 177 GIaQPKGvlLygppgtGktLlaraVahht-----~-c~firvsgselvqk~igegsr 227 (404)
T KOG0728|consen 177 GIAQPKGVLLYGPPGTGKTLLARAVAHHT-----D-CTFIRVSGSELVQKYIGEGSR 227 (404)
T ss_pred CCCCCcceEEecCCCCchhHHHHHHHhhc-----c-eEEEEechHHHHHHHhhhhHH
Confidence 33458899999999999999988887432 2 3455555 6666666655444
No 489
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=73.62 E-value=9.6 Score=41.47 Aligned_cols=54 Identities=24% Similarity=0.257 Sum_probs=40.6
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhc
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWG 156 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~ 156 (635)
.+.-.+|+.++|+|||..++.++....... ..++|+|.=-....+-.+.+..+.
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~-ge~~lyis~ee~~~~i~~~~~~~g 83 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGIKRF-DEPGVFVTFEESPEDIIRNVASFG 83 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCCEEEEEccCCHHHHHHHHHHcC
Confidence 355679999999999999999987665542 346788887666677677776654
No 490
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=73.50 E-value=7.1 Score=36.93 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=26.7
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA 140 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~ 140 (635)
.-.+++.++|+|||..++.++...... ..+++++.
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~ 54 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYID 54 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE
Confidence 347899999999999999998766543 34667764
No 491
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=73.47 E-value=4.4 Score=39.89 Aligned_cols=51 Identities=18% Similarity=0.119 Sum_probs=30.5
Q ss_pred hhhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHH
Q 006698 227 GILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS 283 (635)
Q Consensus 227 ~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~ 283 (635)
..+...+|++|++|.-. .....++....+.+...+ +|-..+++.+...-+.
T Consensus 192 ~~LR~~pD~iiigEiR~-----~e~~~~~~a~~tGh~~~~-tT~Ha~s~~~~i~Rl~ 242 (270)
T PF00437_consen 192 SALRQDPDVIIIGEIRD-----PEAAEAIQAANTGHLGSL-TTLHANSAEDAIERLA 242 (270)
T ss_dssp HHTTS--SEEEESCE-S-----CHHHHHHHHHHTT-EEEE-EEEE-SSHHHHHHHHH
T ss_pred HHhcCCCCcccccccCC-----HhHHHHHHhhccCCceee-eeeecCCHHHHHHHHH
Confidence 35666799999999853 345555666666666655 4667778887765443
No 492
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=73.41 E-value=7.3 Score=40.92 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=21.4
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
+++.||..++|+|||..|-.++..+
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l 218 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLL 218 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998776544
No 493
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=73.22 E-value=8.1 Score=37.37 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=17.5
Q ss_pred CCCceEEeCCCCchHHHHHHHHH
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFL 124 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i 124 (635)
.+..+++..+.|.|||..+-.++
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~ 37 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIA 37 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 46788889999999996554444
No 494
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=73.15 E-value=9.9 Score=41.35 Aligned_cols=53 Identities=30% Similarity=0.357 Sum_probs=38.8
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhcC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGI 157 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~~ 157 (635)
+.-.++..++|+|||..+..++......+ .++++|.-.....+-.+.+..++.
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g--~~~~yis~e~~~~~i~~~~~~~g~ 325 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRRG--ERCLLFAFEESRAQLIRNARSWGI 325 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCC--CcEEEEEecCCHHHHHHHHHHcCC
Confidence 45568899999999999999987765543 477888776556666666666543
No 495
>CHL00095 clpC Clp protease ATP binding subunit
Probab=73.12 E-value=12 Score=43.29 Aligned_cols=51 Identities=24% Similarity=0.219 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhhCCcccccccccCCCCCCC-ceEEeCCCCchHHHHHHHHHHHHH
Q 006698 73 HQREGFEFIWKNIAGGIDLDELKNSTSTGGGN-GCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 73 ~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~-g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
-|.+++..+...+...- ..+ ..+.++. ..+++.++|+|||..|-+++..++
T Consensus 513 GQ~~ai~~l~~~i~~~~--~gl---~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~ 564 (821)
T CHL00095 513 GQDEAVVAVSKAIRRAR--VGL---KNPNRPIASFLFSGPTGVGKTELTKALASYFF 564 (821)
T ss_pred ChHHHHHHHHHHHHHHh--hcc---cCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 48888877755543110 000 1122232 468999999999999999887664
No 496
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=72.79 E-value=6.5 Score=37.55 Aligned_cols=43 Identities=16% Similarity=0.294 Sum_probs=30.7
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLTWEEE 151 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qW~~E 151 (635)
+++++...++|+|||.+|=+++. ..+-+++.+- ..|+-...-+
T Consensus 151 PknVLFyGppGTGKTm~Akalan------e~kvp~l~vkat~liGehVGd 194 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALAN------EAKVPLLLVKATELIGEHVGD 194 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhc------ccCCceEEechHHHHHHHhhh
Confidence 67999999999999999888763 2344566665 5566544433
No 497
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=72.78 E-value=7.6 Score=40.36 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=21.2
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
+++.+|..++|+|||..|-+++..+
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999998888877544
No 498
>PTZ00293 thymidine kinase; Provisional
Probab=72.75 E-value=5.6 Score=37.16 Aligned_cols=36 Identities=17% Similarity=0.143 Sum_probs=26.7
Q ss_pred eEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCcc
Q 006698 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRS 143 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~ 143 (635)
-++..+||+|||...|-.+..+... ..+++++-|..
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y~~a--g~kv~~~kp~~ 42 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRFTYS--EKKCVVIKYSK 42 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHHHHc--CCceEEEEecc
Confidence 4778999999998778777655433 45788888843
No 499
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=72.55 E-value=7.3 Score=37.08 Aligned_cols=38 Identities=26% Similarity=0.306 Sum_probs=28.5
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCc
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPR 142 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~ 142 (635)
+.-.+++.++|+|||..++.++...... ..++++|.=.
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e 60 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE 60 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC
Confidence 4456899999999999999998776654 3456666544
No 500
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=72.51 E-value=35 Score=38.41 Aligned_cols=30 Identities=27% Similarity=0.195 Sum_probs=26.2
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHHHhCCC
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPR 133 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~~~~~~ 133 (635)
-...++..+|.|||+.++.-+..+++.|..
T Consensus 23 lkIf~G~apGVGKTyaML~~a~~~~~~G~D 52 (890)
T COG2205 23 LKIFLGAAPGVGKTYAMLSEAQRLLAEGVD 52 (890)
T ss_pred eEEEeecCCCccHHHHHHHHHHHHHHcCCc
Confidence 357899999999999999999888887765
Done!