Query 006698
Match_columns 635
No_of_seqs 349 out of 2435
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 06:34:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006698.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006698hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 1.4E-78 4.7E-83 687.1 32.4 517 5-580 166-711 (800)
2 1z3i_X Similar to RAD54-like; 100.0 1.9E-75 6.5E-80 645.3 44.0 478 61-579 47-554 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 1.7E-69 5.9E-74 586.1 39.4 430 63-579 31-479 (500)
4 3dmq_A RNA polymerase-associat 100.0 2.3E-53 7.7E-58 487.4 31.2 450 66-576 150-638 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 8.2E-46 2.8E-50 400.3 28.9 432 67-571 7-493 (494)
6 2fwr_A DNA repair protein RAD2 100.0 1.5E-42 5.3E-47 372.2 20.1 363 68-570 92-471 (472)
7 1z5z_A Helicase of the SNF2/RA 100.0 1.2E-40 4.2E-45 326.1 18.9 221 338-578 13-249 (271)
8 4a2p_A RIG-I, retinoic acid in 100.0 5E-38 1.7E-42 344.9 29.5 447 68-576 6-530 (556)
9 4a2q_A RIG-I, retinoic acid in 100.0 4E-38 1.4E-42 357.6 28.6 442 67-576 246-771 (797)
10 4a2w_A RIG-I, retinoic acid in 100.0 1.1E-37 3.8E-42 357.2 28.0 447 67-576 246-771 (936)
11 3tbk_A RIG-I helicase domain; 100.0 1.9E-37 6.5E-42 340.3 28.1 408 69-575 4-528 (555)
12 2oca_A DAR protein, ATP-depend 100.0 1.1E-35 3.8E-40 322.1 25.2 343 68-557 112-462 (510)
13 4gl2_A Interferon-induced heli 100.0 1.4E-35 4.9E-40 333.9 25.8 445 68-575 6-541 (699)
14 2ykg_A Probable ATP-dependent 100.0 1.1E-34 3.9E-39 326.4 26.5 392 68-558 12-521 (696)
15 3h1t_A Type I site-specific re 100.0 1.9E-35 6.6E-40 325.4 19.7 365 67-550 176-558 (590)
16 1xti_A Probable ATP-dependent 100.0 5.2E-34 1.8E-38 298.6 29.1 332 69-567 30-370 (391)
17 1hv8_A Putative ATP-dependent 100.0 6.6E-33 2.3E-37 287.6 28.7 321 69-565 28-355 (367)
18 1s2m_A Putative ATP-dependent 100.0 8.6E-33 2.9E-37 290.2 29.4 327 69-567 43-377 (400)
19 2j0s_A ATP-dependent RNA helic 100.0 8.3E-33 2.8E-37 291.3 25.7 328 69-565 59-393 (410)
20 2z0m_A 337AA long hypothetical 100.0 6.9E-33 2.3E-37 283.9 20.9 313 69-563 16-334 (337)
21 3pey_A ATP-dependent RNA helic 100.0 6.7E-32 2.3E-36 282.9 27.7 328 69-566 27-368 (395)
22 3eiq_A Eukaryotic initiation f 100.0 3.1E-32 1.1E-36 287.4 23.8 327 69-563 62-395 (414)
23 2db3_A ATP-dependent RNA helic 100.0 3.3E-31 1.1E-35 279.9 31.3 315 69-552 78-406 (434)
24 3fht_A ATP-dependent RNA helic 100.0 1.4E-30 4.7E-35 274.6 31.4 332 69-568 47-393 (412)
25 1fuu_A Yeast initiation factor 100.0 1E-32 3.5E-37 289.1 11.9 317 68-553 42-366 (394)
26 2i4i_A ATP-dependent RNA helic 100.0 6.4E-31 2.2E-35 277.6 25.6 319 68-554 36-384 (417)
27 1oyw_A RECQ helicase, ATP-depe 100.0 5.5E-30 1.9E-34 275.7 24.6 306 69-546 25-338 (523)
28 3oiy_A Reverse gyrase helicase 100.0 6.8E-29 2.3E-33 261.5 26.8 322 67-569 19-377 (414)
29 3i5x_A ATP-dependent RNA helic 100.0 1.2E-28 4.1E-33 270.2 28.6 345 69-567 94-461 (563)
30 2v1x_A ATP-dependent DNA helic 100.0 4.7E-29 1.6E-33 271.0 24.4 314 69-547 44-370 (591)
31 3sqw_A ATP-dependent RNA helic 100.0 3.1E-28 1.1E-32 267.0 30.1 345 69-567 43-410 (579)
32 3fho_A ATP-dependent RNA helic 100.0 3.7E-30 1.3E-34 277.2 14.0 317 69-552 141-469 (508)
33 2xgj_A ATP-dependent RNA helic 100.0 3.1E-27 1.1E-31 270.4 29.6 356 68-556 85-502 (1010)
34 3fmp_B ATP-dependent RNA helic 100.0 2.6E-29 8.9E-34 269.8 11.0 318 68-552 113-445 (479)
35 2eyq_A TRCF, transcription-rep 100.0 1.1E-27 3.9E-32 278.1 24.6 314 67-553 601-922 (1151)
36 3hgt_A HDA1 complex subunit 3; 100.0 5.1E-28 1.8E-32 235.0 17.8 199 350-564 20-248 (328)
37 1gm5_A RECG; helicase, replica 99.9 3.3E-27 1.1E-31 261.6 16.4 310 68-546 367-692 (780)
38 3l9o_A ATP-dependent RNA helic 99.9 1.2E-25 4.1E-30 259.5 27.0 377 68-562 183-606 (1108)
39 2zj8_A DNA helicase, putative 99.9 5.8E-25 2E-29 247.1 28.9 326 69-556 23-390 (720)
40 2p6r_A Afuhel308 helicase; pro 99.9 4.9E-25 1.7E-29 247.0 26.9 326 69-555 25-390 (702)
41 2va8_A SSO2462, SKI2-type heli 99.9 5E-25 1.7E-29 247.8 26.6 334 69-554 30-409 (715)
42 4a4z_A Antiviral helicase SKI2 99.9 1.4E-24 4.9E-29 248.4 29.5 381 68-563 38-502 (997)
43 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 7.8E-24 2.7E-28 240.7 23.4 361 68-551 270-707 (1038)
44 4ddu_A Reverse gyrase; topoiso 99.9 3.9E-23 1.3E-27 238.5 24.9 321 69-570 78-505 (1104)
45 1gku_B Reverse gyrase, TOP-RG; 99.9 1.1E-21 3.6E-26 226.9 23.6 318 69-569 57-468 (1054)
46 2v6i_A RNA helicase; membrane, 99.9 3E-21 1E-25 202.7 15.3 99 436-547 171-287 (431)
47 1yks_A Genome polyprotein [con 99.8 1.8E-20 6E-25 197.3 16.0 93 435-540 176-287 (440)
48 2z83_A Helicase/nucleoside tri 99.8 1.7E-20 6E-25 198.6 14.9 104 436-553 190-313 (459)
49 2jlq_A Serine protease subunit 99.8 8.7E-20 3E-24 192.9 20.1 94 436-542 188-301 (451)
50 2wv9_A Flavivirin protease NS2 99.8 4.3E-20 1.5E-24 202.4 16.0 92 435-539 409-520 (673)
51 4f92_B U5 small nuclear ribonu 99.8 7.3E-19 2.5E-23 210.2 26.5 329 69-553 926-1308(1724)
52 4f92_B U5 small nuclear ribonu 99.8 5.1E-19 1.8E-23 211.5 25.1 335 68-557 78-477 (1724)
53 1rif_A DAR protein, DNA helica 99.8 2.9E-20 9.8E-25 184.5 12.0 164 68-288 112-279 (282)
54 2xau_A PRE-mRNA-splicing facto 99.8 2.3E-19 7.7E-24 200.5 20.0 125 427-555 294-445 (773)
55 2whx_A Serine protease/ntpase/ 99.8 7.6E-20 2.6E-24 199.3 15.7 121 435-569 354-495 (618)
56 1t5i_A C_terminal domain of A 99.8 1.5E-19 5.1E-24 164.7 15.2 136 420-566 15-150 (172)
57 2hjv_A ATP-dependent RNA helic 99.8 5.3E-20 1.8E-24 166.3 11.9 137 419-567 18-154 (163)
58 2jgn_A DBX, DDX3, ATP-dependen 99.8 9.5E-20 3.2E-24 167.9 11.1 125 419-553 28-153 (185)
59 3rc3_A ATP-dependent RNA helic 99.8 5E-19 1.7E-23 193.3 17.2 108 438-552 322-444 (677)
60 1fuk_A Eukaryotic initiation f 99.8 8.8E-19 3E-23 158.7 13.2 125 422-556 16-140 (165)
61 1tf5_A Preprotein translocase 99.8 7.3E-18 2.5E-22 183.3 22.4 112 421-542 415-536 (844)
62 2p6n_A ATP-dependent RNA helic 99.8 5.3E-19 1.8E-23 163.5 11.4 123 420-553 39-161 (191)
63 2rb4_A ATP-dependent RNA helic 99.8 2.6E-18 8.8E-23 157.2 14.9 135 421-567 19-159 (175)
64 3o8b_A HCV NS3 protease/helica 99.8 6.4E-18 2.2E-22 182.2 19.5 102 435-556 395-517 (666)
65 2fz4_A DNA repair protein RAD2 99.8 2.5E-18 8.4E-23 165.2 14.3 141 67-275 91-233 (237)
66 3eaq_A Heat resistant RNA depe 99.8 4.3E-18 1.5E-22 160.6 15.5 136 420-567 15-150 (212)
67 2yjt_D ATP-dependent RNA helic 99.6 1.2E-19 4.2E-24 165.1 0.0 123 421-553 15-137 (170)
68 2fsf_A Preprotein translocase 99.7 1.1E-16 3.9E-21 173.5 22.5 111 421-541 424-573 (853)
69 1nkt_A Preprotein translocase 99.7 2E-16 6.9E-21 171.7 23.4 111 421-541 443-607 (922)
70 2d7d_A Uvrabc system protein B 99.7 2.1E-16 7.3E-21 173.8 23.8 110 435-555 444-558 (661)
71 2gxq_A Heat resistant RNA depe 99.7 2.2E-17 7.5E-22 155.8 13.0 155 69-270 23-185 (207)
72 3b6e_A Interferon-induced heli 99.7 2.9E-17 9.8E-22 156.1 11.9 157 68-269 32-216 (216)
73 1t6n_A Probable ATP-dependent 99.7 3.9E-17 1.3E-21 155.7 12.1 157 69-271 36-201 (220)
74 3i32_A Heat resistant RNA depe 99.7 7E-17 2.4E-21 159.5 13.6 137 419-567 11-147 (300)
75 1c4o_A DNA nucleotide excision 99.7 6.9E-15 2.4E-19 161.9 30.7 123 422-555 423-552 (664)
76 3jux_A Protein translocase sub 99.7 2E-15 6.8E-20 160.4 22.2 120 421-552 457-586 (822)
77 1q0u_A Bstdead; DEAD protein, 99.7 1.9E-16 6.6E-21 150.7 12.1 161 69-277 26-197 (219)
78 2pl3_A Probable ATP-dependent 99.7 1.7E-16 5.8E-21 153.0 11.8 155 69-270 47-212 (236)
79 2oxc_A Probable ATP-dependent 99.7 2.2E-16 7.6E-21 151.4 11.6 154 69-270 46-208 (230)
80 1qde_A EIF4A, translation init 99.7 3.7E-16 1.3E-20 149.3 12.6 154 69-270 36-196 (224)
81 1vec_A ATP-dependent RNA helic 99.7 5E-16 1.7E-20 146.3 12.0 155 69-270 25-187 (206)
82 3ber_A Probable ATP-dependent 99.6 4.6E-16 1.6E-20 150.9 11.8 156 69-270 65-227 (249)
83 3bor_A Human initiation factor 99.6 9.7E-16 3.3E-20 147.6 12.8 156 69-270 52-214 (237)
84 1wrb_A DJVLGB; RNA helicase, D 99.6 1.2E-15 4E-20 148.7 12.1 155 69-270 45-219 (253)
85 3iuy_A Probable ATP-dependent 99.6 3.5E-15 1.2E-19 142.9 13.6 156 68-270 41-208 (228)
86 3dkp_A Probable ATP-dependent 99.6 2.6E-15 8.8E-20 145.5 11.8 158 69-270 51-220 (245)
87 3ly5_A ATP-dependent RNA helic 99.6 1.1E-14 3.8E-19 142.2 12.5 156 69-270 76-242 (262)
88 3fe2_A Probable ATP-dependent 99.5 2.2E-14 7.4E-19 138.6 12.4 155 69-270 51-217 (242)
89 3fmo_B ATP-dependent RNA helic 99.4 9.6E-13 3.3E-17 130.9 13.1 156 68-270 113-277 (300)
90 2vl7_A XPD; helicase, unknown 99.3 4.9E-11 1.7E-15 128.6 19.6 97 435-544 383-514 (540)
91 2ipc_A Preprotein translocase 99.3 4.3E-10 1.5E-14 122.2 22.9 152 68-283 78-240 (997)
92 3llm_A ATP-dependent RNA helic 99.0 1.5E-09 5.2E-14 103.8 12.7 151 69-272 61-220 (235)
93 3crv_A XPD/RAD3 related DNA he 98.8 5.8E-09 2E-13 112.8 9.0 68 69-156 3-71 (551)
94 4a15_A XPD helicase, ATP-depen 98.4 5.9E-07 2E-11 97.9 9.1 72 69-156 3-75 (620)
95 4b3f_X DNA-binding protein smu 97.8 5.6E-05 1.9E-09 83.2 10.2 71 66-156 186-257 (646)
96 3e1s_A Exodeoxyribonuclease V, 97.6 0.00035 1.2E-08 75.2 11.9 64 67-151 187-250 (574)
97 1w36_D RECD, exodeoxyribonucle 97.6 0.00043 1.5E-08 75.3 12.6 65 71-154 151-218 (608)
98 3upu_A ATP-dependent DNA helic 97.5 0.00077 2.6E-08 70.8 14.0 63 69-146 25-87 (459)
99 2gk6_A Regulator of nonsense t 97.5 0.00027 9.2E-09 77.3 10.2 68 68-155 179-247 (624)
100 2xzl_A ATP-dependent helicase 97.3 0.0012 4.3E-08 73.7 12.2 68 68-155 359-427 (802)
101 3lfu_A DNA helicase II; SF1 he 97.3 0.011 3.9E-07 64.9 19.9 71 65-156 5-78 (647)
102 2wjy_A Regulator of nonsense t 97.2 0.0011 3.9E-08 74.0 11.4 68 68-155 355-423 (800)
103 2o0j_A Terminase, DNA packagin 97.2 0.0035 1.2E-07 63.4 13.7 150 69-273 163-316 (385)
104 3cpe_A Terminase, DNA packagin 97.1 0.0057 2E-07 66.3 14.6 150 69-273 163-316 (592)
105 2orw_A Thymidine kinase; TMTK, 96.9 0.0017 5.8E-08 58.7 7.2 36 105-142 5-40 (184)
106 2j9r_A Thymidine kinase; TK1, 96.8 0.0076 2.6E-07 55.1 10.3 34 107-142 32-65 (214)
107 3syl_A Protein CBBX; photosynt 96.4 0.0052 1.8E-07 60.7 7.4 30 102-131 66-95 (309)
108 1a5t_A Delta prime, HOLB; zinc 96.4 0.017 5.8E-07 57.6 11.2 48 70-129 3-50 (334)
109 1xx6_A Thymidine kinase; NESG, 96.4 0.011 3.7E-07 53.6 8.7 37 104-142 9-45 (191)
110 3vkw_A Replicase large subunit 96.3 0.01 3.5E-07 60.7 8.6 111 103-273 161-272 (446)
111 2b8t_A Thymidine kinase; deoxy 96.2 0.0059 2E-07 56.7 6.2 38 103-142 12-49 (223)
112 2orv_A Thymidine kinase; TP4A 96.2 0.014 4.8E-07 53.9 8.3 37 104-142 20-56 (234)
113 1l8q_A Chromosomal replication 96.1 0.023 8E-07 56.3 10.1 28 103-130 37-64 (324)
114 2z4s_A Chromosomal replication 96.0 0.02 6.8E-07 59.5 9.7 44 103-146 130-173 (440)
115 3ec2_A DNA replication protein 96.0 0.057 2E-06 48.2 11.6 47 72-128 17-63 (180)
116 2p65_A Hypothetical protein PF 95.8 0.051 1.7E-06 48.5 10.3 27 103-129 43-69 (187)
117 3eie_A Vacuolar protein sortin 95.7 0.014 4.7E-07 58.0 6.4 26 102-127 50-75 (322)
118 4b4t_J 26S protease regulatory 95.6 0.023 7.8E-07 57.4 7.8 49 101-154 180-228 (405)
119 1w4r_A Thymidine kinase; type 95.5 0.042 1.4E-06 49.3 8.2 38 103-142 20-57 (195)
120 1jbk_A CLPB protein; beta barr 95.5 0.096 3.3E-06 46.9 11.0 27 103-129 43-69 (195)
121 3e2i_A Thymidine kinase; Zn-bi 95.4 0.049 1.7E-06 49.7 8.5 35 106-142 31-65 (219)
122 2qp9_X Vacuolar protein sortin 95.4 0.015 5.3E-07 58.5 5.6 26 102-127 83-108 (355)
123 2chg_A Replication factor C sm 95.4 0.11 3.9E-06 47.6 11.3 26 104-129 39-64 (226)
124 2r2a_A Uncharacterized protein 95.3 0.018 6.3E-07 52.4 5.5 37 105-141 7-46 (199)
125 2qby_B CDC6 homolog 3, cell di 95.3 0.067 2.3E-06 54.4 10.1 28 103-130 45-72 (384)
126 3bos_A Putative DNA replicatio 95.1 0.042 1.4E-06 51.6 7.5 28 103-130 52-79 (242)
127 4b4t_L 26S protease subunit RP 95.0 0.031 1.1E-06 57.4 6.4 48 101-153 213-260 (437)
128 2qz4_A Paraplegin; AAA+, SPG7, 95.0 0.047 1.6E-06 52.1 7.5 26 102-127 38-63 (262)
129 4b4t_I 26S protease regulatory 94.8 0.043 1.5E-06 55.7 6.9 49 101-154 214-262 (437)
130 1xwi_A SKD1 protein; VPS4B, AA 94.5 0.034 1.2E-06 55.1 5.4 26 102-127 44-69 (322)
131 2r8r_A Sensor protein; KDPD, P 94.5 0.15 5.2E-06 46.9 9.1 44 104-149 7-52 (228)
132 3t15_A Ribulose bisphosphate c 94.5 0.077 2.6E-06 51.7 7.7 43 101-148 34-76 (293)
133 4b4t_H 26S protease regulatory 94.5 0.047 1.6E-06 56.0 6.2 48 101-153 241-288 (467)
134 2w58_A DNAI, primosome compone 94.4 0.083 2.8E-06 48.1 7.4 26 104-129 55-80 (202)
135 3u61_B DNA polymerase accessor 94.4 0.098 3.3E-06 51.8 8.3 48 233-280 106-155 (324)
136 2q6t_A DNAB replication FORK h 94.3 0.69 2.4E-05 47.8 14.9 50 103-153 200-249 (444)
137 3uk6_A RUVB-like 2; hexameric 94.3 0.3 1E-05 49.2 11.9 46 71-127 49-94 (368)
138 4a15_A XPD helicase, ATP-depen 94.2 0.13 4.3E-06 55.9 9.2 107 427-545 440-578 (620)
139 3vfd_A Spastin; ATPase, microt 94.0 0.081 2.8E-06 54.0 6.9 41 103-148 148-188 (389)
140 2r6a_A DNAB helicase, replicat 93.8 0.62 2.1E-05 48.4 13.5 50 102-152 202-251 (454)
141 1iqp_A RFCS; clamp loader, ext 93.7 0.23 7.9E-06 48.9 9.7 24 105-128 48-71 (327)
142 3h4m_A Proteasome-activating n 93.6 0.028 9.7E-07 54.5 2.6 25 102-126 50-74 (285)
143 2zan_A Vacuolar protein sortin 93.5 0.076 2.6E-06 55.1 5.8 25 102-126 166-190 (444)
144 3co5_A Putative two-component 92.9 0.14 4.8E-06 43.7 5.6 22 103-124 27-48 (143)
145 3d8b_A Fidgetin-like protein 1 92.8 0.08 2.7E-06 53.2 4.6 25 102-126 116-140 (357)
146 3cf0_A Transitional endoplasmi 92.8 0.052 1.8E-06 53.2 3.1 25 102-126 48-72 (301)
147 3bgw_A DNAB-like replicative h 92.7 0.98 3.4E-05 46.6 12.8 49 103-153 197-245 (444)
148 3bh0_A DNAB-like replicative h 92.5 1.5 5E-05 43.0 13.2 50 103-154 68-117 (315)
149 2gno_A DNA polymerase III, gam 92.5 0.63 2.2E-05 45.4 10.5 24 103-126 18-41 (305)
150 4a1f_A DNAB helicase, replicat 92.4 0.17 5.9E-06 50.0 6.2 48 103-152 46-93 (338)
151 4b4t_M 26S protease regulatory 92.2 0.096 3.3E-06 53.6 4.2 49 101-154 213-261 (434)
152 1sxj_D Activator 1 41 kDa subu 92.2 0.32 1.1E-05 48.5 8.2 25 104-128 59-83 (353)
153 1sxj_A Activator 1 95 kDa subu 91.7 0.44 1.5E-05 50.4 8.9 25 103-127 77-101 (516)
154 1fnn_A CDC6P, cell division co 91.6 1.8 6.2E-05 43.5 13.2 23 105-127 46-68 (389)
155 3b9p_A CG5977-PA, isoform A; A 91.6 0.18 6.1E-06 49.1 5.3 24 103-126 54-77 (297)
156 2chq_A Replication factor C sm 91.5 0.26 9E-06 48.3 6.5 24 105-128 40-63 (319)
157 2v1u_A Cell division control p 91.5 0.58 2E-05 47.2 9.3 28 102-129 43-70 (387)
158 1sxj_B Activator 1 37 kDa subu 91.4 0.47 1.6E-05 46.5 8.2 24 105-128 44-67 (323)
159 3hu3_A Transitional endoplasmi 91.3 0.12 4E-06 54.3 3.8 24 102-125 237-260 (489)
160 1njg_A DNA polymerase III subu 91.2 0.35 1.2E-05 44.9 6.8 25 104-128 46-70 (250)
161 3pvs_A Replication-associated 91.2 0.33 1.1E-05 50.2 7.0 23 104-126 51-73 (447)
162 3io5_A Recombination and repai 91.2 0.86 2.9E-05 44.2 9.3 43 105-147 30-72 (333)
163 2epb_A Chromodomain-helicase-D 91.2 0.016 5.4E-07 42.2 -2.1 32 4-35 32-63 (68)
164 2bjv_A PSP operon transcriptio 91.1 1.5 5.2E-05 41.5 11.3 23 103-125 29-51 (265)
165 2qby_A CDC6 homolog 1, cell di 91.1 0.69 2.3E-05 46.6 9.3 29 102-130 44-72 (386)
166 3kl4_A SRP54, signal recogniti 91.0 1 3.4E-05 46.1 10.3 36 103-140 97-132 (433)
167 1sxj_C Activator 1 40 kDa subu 91.0 0.49 1.7E-05 47.0 7.9 24 105-128 48-71 (340)
168 3dm5_A SRP54, signal recogniti 90.6 1.3 4.5E-05 45.3 10.6 37 103-141 100-136 (443)
169 1jr3_A DNA polymerase III subu 90.5 0.72 2.5E-05 46.3 8.8 24 104-127 39-62 (373)
170 1r6b_X CLPA protein; AAA+, N-t 90.4 1.3 4.6E-05 49.3 11.7 26 103-128 207-232 (758)
171 2ce7_A Cell division protein F 89.8 0.69 2.4E-05 48.1 7.9 24 103-126 49-72 (476)
172 1qvr_A CLPB protein; coiled co 89.7 0.54 1.9E-05 53.2 7.7 27 103-129 191-217 (854)
173 2kjq_A DNAA-related protein; s 89.6 1.3 4.5E-05 37.8 8.4 26 103-128 36-61 (149)
174 4b4t_K 26S protease regulatory 89.5 0.16 5.5E-06 51.9 2.8 48 101-153 204-251 (428)
175 1ojl_A Transcriptional regulat 89.4 2.5 8.6E-05 41.0 11.4 23 103-125 25-47 (304)
176 1uaa_A REP helicase, protein ( 89.2 0.42 1.4E-05 52.6 6.1 67 69-156 2-71 (673)
177 1g5t_A COB(I)alamin adenosyltr 88.5 5 0.00017 35.9 11.5 36 103-140 28-63 (196)
178 2ee1_A Chromodomain helicase-D 88.2 0.063 2.2E-06 38.2 -0.9 22 5-26 28-49 (64)
179 3cf2_A TER ATPase, transitiona 88.0 0.44 1.5E-05 52.8 5.3 49 100-153 235-283 (806)
180 3hjh_A Transcription-repair-co 87.7 1.8 6.3E-05 44.9 9.5 57 103-165 14-71 (483)
181 1pjr_A PCRA; DNA repair, DNA r 86.9 0.88 3E-05 50.4 6.9 69 65-154 7-78 (724)
182 1sxj_E Activator 1 40 kDa subu 86.7 1.9 6.3E-05 42.9 8.7 24 105-128 38-61 (354)
183 4fcw_A Chaperone protein CLPB; 86.7 1.4 4.8E-05 42.8 7.7 24 104-127 48-71 (311)
184 1w5s_A Origin recognition comp 86.7 2.5 8.6E-05 42.8 9.9 27 103-129 50-78 (412)
185 2cvh_A DNA repair and recombin 86.2 1.2 4.1E-05 40.7 6.5 43 103-150 20-64 (220)
186 1xp8_A RECA protein, recombina 86.2 1.5 5E-05 43.9 7.5 45 103-149 74-118 (366)
187 1gm5_A RECG; helicase, replica 85.0 2.6 8.7E-05 46.8 9.3 103 417-522 396-500 (780)
188 2zpa_A Uncharacterized protein 85.0 2.3 7.7E-05 45.9 8.5 52 69-142 175-226 (671)
189 1vma_A Cell division protein F 84.9 1.7 5.9E-05 42.2 7.1 34 105-140 106-139 (306)
190 3k1j_A LON protease, ATP-depen 84.5 2.7 9.2E-05 45.3 9.2 24 103-126 60-83 (604)
191 1nlf_A Regulatory protein REPA 84.1 7.5 0.00026 36.9 11.3 51 103-154 30-89 (279)
192 2vhj_A Ntpase P4, P4; non- hyd 83.9 2.1 7.1E-05 41.7 7.0 24 103-126 123-146 (331)
193 2zr9_A Protein RECA, recombina 83.8 2 6.8E-05 42.7 7.1 44 103-148 61-104 (349)
194 2c9o_A RUVB-like 1; hexameric 83.7 1.3 4.5E-05 45.9 6.1 44 103-149 63-106 (456)
195 3te6_A Regulatory protein SIR3 83.3 1.3 4.4E-05 43.3 5.4 29 102-130 44-72 (318)
196 3cmu_A Protein RECA, recombina 82.5 4.5 0.00016 49.3 10.5 51 102-156 1426-1476(2050)
197 1u94_A RECA protein, recombina 82.0 3.5 0.00012 41.0 8.1 41 103-145 63-103 (356)
198 2dhr_A FTSH; AAA+ protein, hex 81.6 2.9 0.0001 43.6 7.7 24 103-126 64-87 (499)
199 1zu4_A FTSY; GTPase, signal re 79.9 7 0.00024 38.1 9.4 36 104-141 106-141 (320)
200 3hr8_A Protein RECA; alpha and 79.8 4.7 0.00016 39.9 8.1 43 103-147 61-103 (356)
201 2zts_A Putative uncharacterize 79.6 2.8 9.5E-05 39.0 6.2 52 103-155 30-81 (251)
202 2qgz_A Helicase loader, putati 78.5 1.8 6.1E-05 42.2 4.6 26 103-128 152-177 (308)
203 1tue_A Replication protein E1; 77.7 1.4 4.7E-05 39.9 3.1 25 103-127 58-82 (212)
204 2v3c_C SRP54, signal recogniti 77.5 4.5 0.00015 41.4 7.3 36 104-141 100-135 (432)
205 2px0_A Flagellar biosynthesis 75.3 18 0.00061 34.7 10.7 37 103-140 105-141 (296)
206 2dr3_A UPF0273 protein PH0284; 74.3 5.9 0.0002 36.6 6.8 50 103-154 23-72 (247)
207 2r44_A Uncharacterized protein 72.3 2.4 8.4E-05 41.6 3.8 24 103-126 46-69 (331)
208 2eyq_A TRCF, transcription-rep 72.0 10 0.00036 44.1 9.4 102 416-520 630-733 (1151)
209 3oiy_A Reverse gyrase helicase 72.0 8.2 0.00028 39.1 7.8 100 417-520 43-147 (414)
210 3n70_A Transport activator; si 71.5 6.1 0.00021 33.2 5.6 22 103-124 24-45 (145)
211 3u4q_A ATP-dependent helicase/ 71.3 3.3 0.00011 48.8 5.2 56 66-142 7-66 (1232)
212 1ypw_A Transitional endoplasmi 70.1 3.7 0.00013 45.9 4.9 24 101-124 236-259 (806)
213 3cf2_A TER ATPase, transitiona 69.9 1.8 6.2E-05 47.9 2.3 45 100-150 508-553 (806)
214 3cmu_A Protein RECA, recombina 69.5 16 0.00055 44.7 10.3 46 102-149 731-776 (2050)
215 1ls1_A Signal recognition part 69.4 29 0.001 33.2 10.7 36 104-141 99-134 (295)
216 3u4q_B ATP-dependent helicase/ 68.8 5.5 0.00019 46.7 6.3 48 108-155 6-54 (1166)
217 2r62_A Cell division protease 67.2 3.1 0.00011 39.3 3.1 25 103-127 44-68 (268)
218 4ddu_A Reverse gyrase; topoiso 66.9 13 0.00045 43.0 8.8 102 416-521 99-205 (1104)
219 1u0j_A DNA replication protein 66.6 4.1 0.00014 38.4 3.7 24 103-126 104-127 (267)
220 3crv_A XPD/RAD3 related DNA he 65.7 23 0.00078 37.5 9.8 75 436-523 393-473 (551)
221 1d2n_A N-ethylmaleimide-sensit 65.0 3.9 0.00013 38.8 3.3 24 103-126 64-87 (272)
222 1g41_A Heat shock protein HSLU 64.6 3.4 0.00011 42.3 2.9 24 103-126 50-73 (444)
223 2l82_A Designed protein OR32; 64.4 26 0.00091 27.0 7.1 48 438-490 4-51 (162)
224 1lv7_A FTSH; alpha/beta domain 64.1 4.8 0.00016 37.7 3.8 25 103-127 45-69 (257)
225 1ofh_A ATP-dependent HSL prote 63.2 5.4 0.00018 38.4 4.1 25 103-127 50-74 (310)
226 2x8a_A Nuclear valosin-contain 62.4 5.5 0.00019 37.9 3.9 24 102-125 43-66 (274)
227 2ffh_A Protein (FFH); SRP54, s 62.1 32 0.0011 34.9 9.6 37 103-141 98-134 (425)
228 2oxc_A Probable ATP-dependent 62.0 45 0.0016 30.2 10.1 95 417-518 68-172 (230)
229 1t6n_A Probable ATP-dependent 62.0 53 0.0018 29.3 10.5 99 418-521 59-167 (220)
230 3cmw_A Protein RECA, recombina 61.2 16 0.00054 44.0 8.1 45 101-147 730-774 (1706)
231 3i42_A Response regulator rece 59.9 21 0.00071 28.4 6.6 105 426-540 18-124 (127)
232 3nbx_X ATPase RAVA; AAA+ ATPas 59.5 4.9 0.00017 41.9 3.1 23 103-125 41-63 (500)
233 3of5_A Dethiobiotin synthetase 58.9 7.9 0.00027 35.6 4.1 27 106-132 8-34 (228)
234 3eqz_A Response regulator; str 58.2 50 0.0017 26.2 8.9 76 466-541 47-128 (135)
235 3hws_A ATP-dependent CLP prote 58.0 6.5 0.00022 39.1 3.7 26 102-127 50-75 (363)
236 3pxg_A Negative regulator of g 57.5 8.7 0.0003 39.8 4.6 26 103-128 201-226 (468)
237 1q57_A DNA primase/helicase; d 57.3 17 0.00056 38.0 6.8 50 102-152 241-290 (503)
238 2w0m_A SSO2452; RECA, SSPF, un 57.1 26 0.00087 31.7 7.5 49 103-153 23-71 (235)
239 3ipz_A Monothiol glutaredoxin- 57.0 38 0.0013 26.6 7.5 59 435-500 16-80 (109)
240 2qmh_A HPR kinase/phosphorylas 56.8 5.4 0.00019 35.7 2.5 23 103-125 34-56 (205)
241 2j48_A Two-component sensor ki 56.6 27 0.00092 27.0 6.7 71 465-537 45-117 (119)
242 3bs4_A Uncharacterized protein 56.5 16 0.00054 34.3 5.8 54 103-158 21-74 (260)
243 3cmw_A Protein RECA, recombina 56.1 36 0.0012 41.0 9.9 51 103-158 1431-1482(1706)
244 1byi_A Dethiobiotin synthase; 55.9 12 0.00041 33.9 4.9 34 106-141 5-38 (224)
245 3qxc_A Dethiobiotin synthetase 55.8 9.7 0.00033 35.4 4.1 27 106-132 25-51 (242)
246 1um8_A ATP-dependent CLP prote 55.3 7.6 0.00026 38.8 3.7 25 103-127 72-96 (376)
247 1tf7_A KAIC; homohexamer, hexa 54.1 26 0.00089 36.8 7.7 49 103-153 281-329 (525)
248 3a10_A Response regulator; pho 53.4 40 0.0014 26.0 7.2 16 520-535 99-114 (116)
249 3lte_A Response regulator; str 53.3 55 0.0019 26.0 8.2 22 437-458 7-28 (132)
250 3trf_A Shikimate kinase, SK; a 52.8 9.4 0.00032 33.4 3.5 25 103-127 5-29 (185)
251 3fgn_A Dethiobiotin synthetase 52.8 11 0.00039 35.1 4.1 27 106-132 30-56 (251)
252 3e70_C DPA, signal recognition 51.7 85 0.0029 30.4 10.4 36 103-140 129-164 (328)
253 1xti_A Probable ATP-dependent 51.2 77 0.0026 31.1 10.5 99 417-520 52-160 (391)
254 3zyw_A Glutaredoxin-3; metal b 50.7 49 0.0017 26.1 7.1 48 435-487 14-67 (111)
255 3tqf_A HPR(Ser) kinase; transf 50.7 8.7 0.0003 33.5 2.7 23 103-125 16-38 (181)
256 1g3q_A MIND ATPase, cell divis 49.8 15 0.00051 33.6 4.5 33 107-141 7-39 (237)
257 2yvu_A Probable adenylyl-sulfa 49.7 17 0.00057 31.9 4.6 27 102-128 12-38 (186)
258 3cg4_A Response regulator rece 49.6 99 0.0034 24.7 10.2 73 465-537 51-126 (142)
259 3pfi_A Holliday junction ATP-d 49.3 11 0.00039 36.7 3.8 24 103-126 55-78 (338)
260 3iij_A Coilin-interacting nucl 48.9 16 0.00055 31.7 4.4 25 103-127 11-35 (180)
261 3gx8_A Monothiol glutaredoxin- 48.8 72 0.0025 25.6 8.0 49 435-488 14-71 (121)
262 1ixz_A ATP-dependent metallopr 48.8 13 0.00044 34.6 3.9 23 103-125 49-71 (254)
263 3cwq_A Para family chromosome 48.6 16 0.00055 32.9 4.4 41 107-150 5-47 (209)
264 3vaa_A Shikimate kinase, SK; s 48.6 13 0.00043 33.2 3.6 25 103-127 25-49 (199)
265 1u6t_A SH3 domain-binding glut 48.5 31 0.0011 27.9 5.6 45 439-488 2-53 (121)
266 3gk5_A Uncharacterized rhodane 48.5 28 0.00095 27.3 5.3 43 428-475 46-89 (108)
267 4etp_A Kinesin-like protein KA 48.4 14 0.00049 37.1 4.3 19 103-121 140-159 (403)
268 1x3p_A Cpsrp43; chromo-2 domai 48.3 5.8 0.0002 27.0 0.9 29 6-36 19-47 (54)
269 3t0q_A AGR253WP; kinesin, alph 48.2 14 0.00048 36.4 4.1 19 103-121 85-104 (349)
270 1hyq_A MIND, cell division inh 47.0 18 0.00063 33.7 4.7 33 106-140 6-38 (263)
271 3grc_A Sensor protein, kinase; 46.8 77 0.0026 25.4 8.2 74 465-538 50-127 (140)
272 1hqc_A RUVB; extended AAA-ATPa 46.4 11 0.00036 36.6 3.0 25 103-127 38-62 (324)
273 3zq6_A Putative arsenical pump 46.3 17 0.00058 35.4 4.5 35 105-141 16-50 (324)
274 3pxi_A Negative regulator of g 46.1 16 0.00054 40.5 4.6 26 103-128 201-226 (758)
275 3ug7_A Arsenical pump-driving 45.9 19 0.00064 35.5 4.7 34 105-140 28-61 (349)
276 2xxa_A Signal recognition part 45.9 21 0.0007 36.4 5.1 38 103-141 100-137 (433)
277 2ph1_A Nucleotide-binding prot 45.7 19 0.00065 33.6 4.6 33 106-140 22-54 (262)
278 3gbj_A KIF13B protein; kinesin 45.5 16 0.00054 36.1 4.0 20 103-122 92-112 (354)
279 2yan_A Glutaredoxin-3; oxidore 45.2 77 0.0026 24.4 7.5 58 435-499 15-78 (105)
280 2v1x_A ATP-dependent DNA helic 45.0 66 0.0022 34.2 9.1 82 416-504 65-147 (591)
281 3ber_A Probable ATP-dependent 44.5 1.2E+02 0.0042 27.7 10.0 96 418-520 88-194 (249)
282 4dzz_A Plasmid partitioning pr 44.4 19 0.00066 31.9 4.3 39 109-149 8-48 (206)
283 2oap_1 GSPE-2, type II secreti 44.3 19 0.00065 37.6 4.7 49 228-283 329-377 (511)
284 2qxy_A Response regulator; reg 44.3 66 0.0023 25.9 7.4 19 521-539 104-122 (142)
285 3dc4_A Kinesin-like protein NO 44.2 13 0.00045 36.5 3.2 18 103-120 94-112 (344)
286 1vec_A ATP-dependent RNA helic 44.1 1.2E+02 0.0042 26.3 9.7 96 417-518 47-152 (206)
287 1z6t_A APAF-1, apoptotic prote 43.7 76 0.0026 33.6 9.5 23 103-125 147-169 (591)
288 3q9l_A Septum site-determining 43.6 21 0.00072 33.1 4.5 32 107-140 7-38 (260)
289 2ze6_A Isopentenyl transferase 43.5 15 0.00052 34.3 3.4 23 105-127 3-25 (253)
290 3nwn_A Kinesin-like protein KI 43.3 13 0.00044 36.8 3.0 20 103-122 104-124 (359)
291 1aky_A Adenylate kinase; ATP:A 43.2 17 0.00058 32.9 3.7 25 103-127 4-28 (220)
292 3cio_A ETK, tyrosine-protein k 43.2 23 0.00078 34.0 4.7 32 107-140 109-140 (299)
293 2yhs_A FTSY, cell division pro 43.1 1.1E+02 0.0039 31.5 10.1 35 103-139 293-327 (503)
294 1ak2_A Adenylate kinase isoenz 43.0 18 0.00061 33.1 3.8 25 103-127 16-40 (233)
295 3cnb_A DNA-binding response re 43.0 88 0.003 25.0 8.0 76 465-540 54-132 (143)
296 2z43_A DNA repair and recombin 42.9 14 0.00049 35.9 3.3 41 103-143 107-151 (324)
297 1g8p_A Magnesium-chelatase 38 42.8 8.8 0.0003 37.7 1.8 24 103-126 45-68 (350)
298 2ewv_A Twitching motility prot 42.8 16 0.00055 36.4 3.7 25 103-127 136-160 (372)
299 1y63_A LMAJ004144AAA protein; 42.8 19 0.00065 31.5 3.8 23 103-125 10-32 (184)
300 3kjh_A CO dehydrogenase/acetyl 42.7 17 0.00059 33.4 3.8 29 109-139 6-34 (254)
301 3g5j_A Putative ATP/GTP bindin 42.6 31 0.001 28.0 4.9 37 435-476 87-125 (134)
302 1iy2_A ATP-dependent metallopr 42.5 18 0.00062 34.2 3.9 23 103-125 73-95 (278)
303 2nr8_A Kinesin-like protein KI 42.5 16 0.00054 36.2 3.5 20 103-122 103-123 (358)
304 4a14_A Kinesin, kinesin-like p 42.4 17 0.00059 35.7 3.8 19 103-121 83-102 (344)
305 1in4_A RUVB, holliday junction 42.3 27 0.00093 34.0 5.2 24 104-127 52-75 (334)
306 3bfv_A CAPA1, CAPB2, membrane 42.2 23 0.00079 33.4 4.5 29 109-139 89-117 (271)
307 1wp9_A ATP-dependent RNA helic 42.2 63 0.0021 32.8 8.4 96 417-520 30-133 (494)
308 1wcv_1 SOJ, segregation protei 42.1 19 0.00066 33.5 4.0 32 107-140 11-42 (257)
309 4dad_A Putative pilus assembly 42.1 86 0.0029 25.4 7.8 74 465-538 67-141 (146)
310 2owm_A Nckin3-434, related to 41.9 19 0.00063 36.8 4.0 20 103-122 136-156 (443)
311 1f9v_A Kinesin-like protein KA 41.8 19 0.00064 35.5 3.8 19 103-121 84-103 (347)
312 3b6u_A Kinesin-like protein KI 41.7 16 0.00056 36.2 3.5 20 103-122 101-121 (372)
313 1bg2_A Kinesin; motor protein, 41.5 17 0.00059 35.4 3.5 20 103-122 77-97 (325)
314 3kb2_A SPBC2 prophage-derived 41.4 18 0.00061 31.0 3.4 22 105-126 3-24 (173)
315 3la6_A Tyrosine-protein kinase 41.3 24 0.00083 33.6 4.5 33 106-140 96-128 (286)
316 1cp2_A CP2, nitrogenase iron p 41.3 16 0.00056 34.1 3.4 28 110-139 8-35 (269)
317 3a8t_A Adenylate isopentenyltr 41.3 15 0.0005 36.0 3.0 22 104-125 41-62 (339)
318 3end_A Light-independent proto 41.2 17 0.0006 34.9 3.6 32 106-139 44-75 (307)
319 3nhm_A Response regulator; pro 41.1 1E+02 0.0035 24.3 8.0 102 427-539 20-123 (133)
320 3hdg_A Uncharacterized protein 41.1 73 0.0025 25.4 7.1 74 465-538 51-125 (137)
321 2wbe_C Bipolar kinesin KRP-130 41.0 17 0.00057 36.2 3.4 20 103-122 100-120 (373)
322 2zfi_A Kinesin-like protein KI 40.9 17 0.00059 36.0 3.5 20 103-122 89-109 (366)
323 2rep_A Kinesin-like protein KI 40.9 19 0.00065 35.8 3.8 20 103-122 115-135 (376)
324 3ea0_A ATPase, para family; al 40.8 23 0.00079 32.5 4.3 33 107-140 9-41 (245)
325 2afh_E Nitrogenase iron protei 40.8 18 0.00062 34.4 3.6 29 109-139 8-36 (289)
326 1v8k_A Kinesin-like protein KI 40.6 14 0.00049 37.1 2.8 20 103-122 154-174 (410)
327 4ag6_A VIRB4 ATPase, type IV s 40.4 36 0.0012 34.0 5.9 41 103-145 35-75 (392)
328 3kto_A Response regulator rece 40.3 60 0.0021 26.0 6.5 23 437-459 7-29 (136)
329 3foz_A TRNA delta(2)-isopenten 40.2 16 0.00053 35.3 2.9 24 103-126 10-33 (316)
330 1v5w_A DMC1, meiotic recombina 40.2 17 0.00058 35.7 3.3 41 103-143 122-166 (343)
331 1zuh_A Shikimate kinase; alpha 40.1 20 0.00067 30.7 3.4 24 104-127 8-31 (168)
332 3flh_A Uncharacterized protein 39.9 38 0.0013 27.3 4.9 36 435-475 70-107 (124)
333 2iut_A DNA translocase FTSK; n 39.9 31 0.001 36.4 5.3 41 103-143 214-256 (574)
334 2y65_A Kinesin, kinesin heavy 39.8 19 0.00063 35.7 3.5 20 103-122 84-104 (365)
335 3foj_A Uncharacterized protein 39.6 31 0.001 26.5 4.2 36 435-475 55-90 (100)
336 3lre_A Kinesin-like protein KI 39.5 21 0.00072 35.2 3.8 20 103-122 105-125 (355)
337 1qhx_A CPT, protein (chloramph 39.4 17 0.00059 31.3 3.0 22 104-125 4-25 (178)
338 3jvv_A Twitching mobility prot 39.4 20 0.0007 35.4 3.7 25 103-127 123-147 (356)
339 2wem_A Glutaredoxin-related pr 39.3 1.1E+02 0.0038 24.3 7.6 66 426-501 12-84 (118)
340 1kht_A Adenylate kinase; phosp 38.9 20 0.00069 31.2 3.4 24 104-127 4-27 (192)
341 3umf_A Adenylate kinase; rossm 38.8 23 0.0008 32.1 3.8 25 103-127 29-53 (217)
342 1n0w_A DNA repair protein RAD5 38.8 18 0.00063 33.0 3.2 39 103-141 24-66 (243)
343 2rhm_A Putative kinase; P-loop 38.8 19 0.00064 31.6 3.1 25 103-127 5-29 (193)
344 1goj_A Kinesin, kinesin heavy 38.8 19 0.00065 35.5 3.4 20 103-122 80-100 (355)
345 1zak_A Adenylate kinase; ATP:A 38.2 23 0.00079 32.0 3.7 25 103-127 5-29 (222)
346 3fwy_A Light-independent proto 38.2 21 0.00072 34.6 3.6 29 109-139 54-82 (314)
347 2woo_A ATPase GET3; tail-ancho 38.0 27 0.00091 34.1 4.3 34 105-140 21-54 (329)
348 1wik_A Thioredoxin-like protei 37.9 1.1E+02 0.0036 23.8 7.3 58 435-499 13-76 (109)
349 1dbw_A Transcriptional regulat 37.9 1.2E+02 0.004 23.6 7.9 21 438-458 5-25 (126)
350 2woj_A ATPase GET3; tail-ancho 37.8 30 0.001 34.1 4.7 37 105-141 20-56 (354)
351 3eme_A Rhodanese-like domain p 37.7 31 0.0011 26.6 3.9 36 435-475 55-90 (103)
352 1e9r_A Conjugal transfer prote 37.6 25 0.00085 35.8 4.3 39 103-143 53-91 (437)
353 1x88_A Kinesin-like protein KI 37.5 19 0.00066 35.5 3.2 20 103-122 88-108 (359)
354 1cr0_A DNA primase/helicase; R 37.5 73 0.0025 30.1 7.4 38 103-141 35-72 (296)
355 2qv0_A Protein MRKE; structura 37.4 1.2E+02 0.0042 24.2 8.0 22 437-458 10-31 (143)
356 2vvg_A Kinesin-2; motor protei 37.3 18 0.00063 35.5 3.0 20 103-122 89-109 (350)
357 3eul_A Possible nitrate/nitrit 37.2 88 0.003 25.6 7.2 25 435-459 14-38 (152)
358 1qde_A EIF4A, translation init 37.0 83 0.0028 28.0 7.4 96 417-520 58-163 (224)
359 3crm_A TRNA delta(2)-isopenten 36.7 17 0.0006 35.2 2.7 23 104-126 6-28 (323)
360 1nks_A Adenylate kinase; therm 36.7 21 0.00071 31.2 3.1 23 105-127 3-25 (194)
361 4e7p_A Response regulator; DNA 36.7 89 0.003 25.5 7.1 17 521-537 123-139 (150)
362 1via_A Shikimate kinase; struc 36.6 25 0.00087 30.2 3.6 23 105-127 6-28 (175)
363 1tmy_A CHEY protein, TMY; chem 36.5 93 0.0032 24.0 6.9 16 520-535 103-118 (120)
364 1t5c_A CENP-E protein, centrom 36.5 19 0.00064 35.5 2.9 20 103-122 77-97 (349)
365 2xj4_A MIPZ; replication, cell 36.5 29 0.00098 32.9 4.2 42 107-150 9-53 (286)
366 3u06_A Protein claret segregat 36.4 21 0.0007 36.1 3.2 20 103-122 138-158 (412)
367 3io3_A DEHA2D07832P; chaperone 36.3 36 0.0012 33.4 5.0 46 104-149 19-66 (348)
368 2c95_A Adenylate kinase 1; tra 36.2 25 0.00084 30.8 3.5 25 103-127 9-33 (196)
369 1ihu_A Arsenical pump-driving 36.1 35 0.0012 36.4 5.3 37 103-141 8-44 (589)
370 3lw7_A Adenylate kinase relate 36.0 19 0.00065 30.7 2.7 18 106-123 4-21 (179)
371 2cdn_A Adenylate kinase; phosp 36.0 29 0.001 30.6 4.0 23 105-127 22-44 (201)
372 3cm0_A Adenylate kinase; ATP-b 35.8 21 0.00073 31.0 3.0 23 104-126 5-27 (186)
373 3k9g_A PF-32 protein; ssgcid, 35.6 26 0.00088 32.8 3.7 31 106-139 31-61 (267)
374 2wul_A Glutaredoxin related pr 35.5 1.3E+02 0.0046 24.0 7.4 65 426-499 12-83 (118)
375 2iyv_A Shikimate kinase, SK; t 35.5 28 0.00095 30.2 3.7 23 105-127 4-26 (184)
376 1gku_B Reverse gyrase, TOP-RG; 35.5 69 0.0024 36.9 7.9 97 417-518 78-181 (1054)
377 3sr0_A Adenylate kinase; phosp 35.4 25 0.00085 31.6 3.4 22 106-127 3-24 (206)
378 3pxi_A Negative regulator of g 35.3 74 0.0025 35.1 7.9 24 105-128 523-546 (758)
379 3tbk_A RIG-I helicase domain; 35.2 87 0.003 32.6 8.2 95 417-518 26-133 (555)
380 2j37_W Signal recognition part 35.2 34 0.0012 35.5 4.8 37 103-141 101-137 (504)
381 3iwh_A Rhodanese-like domain p 34.8 37 0.0013 26.4 3.9 36 435-475 55-90 (103)
382 3d3q_A TRNA delta(2)-isopenten 34.7 21 0.0007 35.0 2.8 23 105-127 9-31 (340)
383 3kht_A Response regulator; PSI 34.6 1.2E+02 0.0041 24.4 7.5 23 437-459 6-28 (144)
384 3exa_A TRNA delta(2)-isopenten 34.5 18 0.00062 34.9 2.4 22 105-126 5-26 (322)
385 1tev_A UMP-CMP kinase; ploop, 34.5 26 0.0009 30.5 3.4 23 104-126 4-26 (196)
386 3cob_A Kinesin heavy chain-lik 34.4 17 0.00057 36.1 2.2 20 103-122 79-99 (369)
387 2wci_A Glutaredoxin-4; redox-a 34.3 74 0.0025 26.2 5.9 57 436-499 34-96 (135)
388 1ly1_A Polynucleotide kinase; 33.9 23 0.00079 30.5 2.9 20 105-124 4-23 (181)
389 3t61_A Gluconokinase; PSI-biol 33.8 27 0.00091 31.0 3.3 23 104-126 19-41 (202)
390 1knx_A Probable HPR(Ser) kinas 33.6 20 0.00068 34.6 2.5 23 102-124 146-168 (312)
391 2jaq_A Deoxyguanosine kinase; 33.5 27 0.00094 30.7 3.4 22 106-127 3-24 (205)
392 2rdm_A Response regulator rece 33.5 1.5E+02 0.0052 23.1 7.9 20 520-539 105-124 (132)
393 1wv9_A Rhodanese homolog TT165 33.4 45 0.0015 25.1 4.2 35 437-476 54-88 (94)
394 3snk_A Response regulator CHEY 33.4 45 0.0016 26.7 4.5 32 435-471 13-45 (135)
395 1e6c_A Shikimate kinase; phosp 33.3 29 0.001 29.6 3.4 22 105-126 4-25 (173)
396 1gvn_B Zeta; postsegregational 33.3 22 0.00076 33.8 2.8 23 103-125 33-55 (287)
397 3fb4_A Adenylate kinase; psych 33.2 27 0.00094 31.2 3.4 22 106-127 3-24 (216)
398 3fe2_A Probable ATP-dependent 33.2 2E+02 0.0067 25.9 9.5 96 418-520 74-184 (242)
399 1ukz_A Uridylate kinase; trans 33.0 27 0.00092 30.9 3.2 23 103-125 15-37 (203)
400 2heh_A KIF2C protein; kinesin, 32.9 21 0.00072 35.6 2.6 20 103-122 134-154 (387)
401 1qf9_A UMP/CMP kinase, protein 32.8 30 0.001 30.0 3.6 23 104-126 7-29 (194)
402 3hv2_A Response regulator/HD d 32.8 1.1E+02 0.0039 24.9 7.2 24 436-459 14-37 (153)
403 1xjc_A MOBB protein homolog; s 32.7 37 0.0013 29.3 3.9 26 105-130 6-31 (169)
404 1t1v_A SH3BGRL3, SH3 domain-bi 32.6 82 0.0028 23.6 5.6 58 438-500 3-67 (93)
405 2oze_A ORF delta'; para, walke 32.3 43 0.0015 31.8 4.8 28 110-139 44-71 (298)
406 2pl3_A Probable ATP-dependent 32.2 1.9E+02 0.0064 25.9 9.1 94 417-518 69-177 (236)
407 3l0o_A Transcription terminati 32.0 43 0.0015 33.4 4.6 51 103-157 175-225 (427)
408 1gmx_A GLPE protein; transfera 31.8 67 0.0023 24.9 5.1 37 435-476 57-94 (108)
409 3iqw_A Tail-anchored protein t 31.7 35 0.0012 33.3 4.0 43 105-149 18-62 (334)
410 3eod_A Protein HNR; response r 31.7 1.1E+02 0.0036 24.1 6.6 63 435-510 6-69 (130)
411 3a4m_A L-seryl-tRNA(SEC) kinas 31.6 35 0.0012 31.8 3.9 23 105-127 6-28 (260)
412 3n53_A Response regulator rece 31.6 1.9E+02 0.0066 22.8 9.2 73 465-537 46-121 (140)
413 1yrb_A ATP(GTP)binding protein 31.4 40 0.0014 31.1 4.3 35 103-140 14-48 (262)
414 3hdv_A Response regulator; PSI 31.3 1.6E+02 0.0056 23.1 7.8 73 466-538 53-127 (136)
415 3bfn_A Kinesin-like protein KI 31.3 20 0.00067 35.9 2.1 20 103-122 98-118 (388)
416 1qkk_A DCTD, C4-dicarboxylate 31.3 85 0.0029 25.8 6.1 29 436-469 3-31 (155)
417 2rjn_A Response regulator rece 31.2 1E+02 0.0035 25.2 6.6 63 435-510 6-69 (154)
418 2gxq_A Heat resistant RNA depe 31.1 2.3E+02 0.0078 24.5 9.3 95 417-520 45-152 (207)
419 2pt5_A Shikimate kinase, SK; a 31.1 33 0.0011 29.1 3.4 22 106-127 3-24 (168)
420 2gkg_A Response regulator homo 31.1 1.2E+02 0.0041 23.4 6.8 22 438-459 7-28 (127)
421 2bwj_A Adenylate kinase 5; pho 31.1 29 0.001 30.4 3.1 25 103-127 12-36 (199)
422 3pg5_A Uncharacterized protein 31.0 33 0.0011 33.9 3.7 28 110-139 9-36 (361)
423 1r6b_X CLPA protein; AAA+, N-t 30.8 68 0.0023 35.3 6.7 23 105-127 490-512 (758)
424 3eph_A TRNA isopentenyltransfe 30.8 28 0.00096 34.9 3.1 23 105-127 4-26 (409)
425 1knq_A Gluconate kinase; ALFA/ 30.6 39 0.0013 28.9 3.8 22 103-124 8-29 (175)
426 2h58_A Kinesin-like protein KI 30.6 27 0.00093 34.0 2.9 20 103-122 80-100 (330)
427 2ius_A DNA translocase FTSK; n 30.4 54 0.0019 34.1 5.3 41 103-143 167-209 (512)
428 2qr3_A Two-component system re 30.3 90 0.0031 24.9 6.0 17 521-537 109-125 (140)
429 3ice_A Transcription terminati 30.3 53 0.0018 32.8 4.9 51 102-156 173-223 (422)
430 1jr3_D DNA polymerase III, del 30.3 1.7E+02 0.0058 28.2 8.9 27 103-129 18-44 (343)
431 2oca_A DAR protein, ATP-depend 30.2 1.2E+02 0.0042 31.1 8.3 95 417-521 135-234 (510)
432 2zay_A Response regulator rece 30.2 1.1E+02 0.0036 24.7 6.5 23 437-459 9-31 (147)
433 4a2p_A RIG-I, retinoic acid in 30.2 1.1E+02 0.0038 31.7 8.1 95 417-518 29-136 (556)
434 1mvo_A PHOP response regulator 30.1 2E+02 0.0068 22.5 8.5 18 520-537 103-120 (136)
435 2qen_A Walker-type ATPase; unk 30.1 31 0.0011 33.4 3.4 22 104-125 32-53 (350)
436 1e4v_A Adenylate kinase; trans 29.9 31 0.0011 30.9 3.1 22 106-127 3-24 (214)
437 1srr_A SPO0F, sporulation resp 29.8 1E+02 0.0035 23.9 6.1 18 520-537 103-120 (124)
438 1k66_A Phytochrome response re 29.8 1.4E+02 0.0047 23.9 7.1 24 436-459 6-29 (149)
439 1k68_A Phytochrome response re 29.7 1E+02 0.0035 24.4 6.3 24 436-459 2-25 (140)
440 2qen_A Walker-type ATPase; unk 29.7 61 0.0021 31.3 5.5 38 233-270 129-173 (350)
441 3dl0_A Adenylate kinase; phosp 29.7 27 0.00093 31.3 2.7 20 106-125 3-22 (216)
442 2b4a_A BH3024; flavodoxin-like 29.7 2.1E+02 0.0071 22.6 10.7 71 465-537 60-130 (138)
443 3be4_A Adenylate kinase; malar 29.6 32 0.0011 31.0 3.1 23 105-127 7-29 (217)
444 2plr_A DTMP kinase, probable t 29.6 35 0.0012 30.3 3.4 24 104-127 5-28 (213)
445 1ypw_A Transitional endoplasmi 29.6 19 0.00065 40.1 1.9 26 102-127 510-535 (806)
446 2pbr_A DTMP kinase, thymidylat 29.4 35 0.0012 29.7 3.3 22 106-127 3-24 (195)
447 3f6c_A Positive transcription 29.3 1.9E+02 0.0067 22.5 7.9 74 465-538 46-120 (134)
448 3gl9_A Response regulator; bet 29.2 1.8E+02 0.0063 22.4 7.6 22 438-459 4-25 (122)
449 1odf_A YGR205W, hypothetical 3 29.1 37 0.0013 32.3 3.6 38 104-141 32-69 (290)
450 3fkq_A NTRC-like two-domain pr 28.9 48 0.0016 32.9 4.5 33 106-140 147-179 (373)
451 2p5t_B PEZT; postsegregational 28.8 26 0.00089 32.5 2.4 23 103-125 32-54 (253)
452 4hae_A CDY-like 2, chromodomai 28.6 8.1 0.00028 28.8 -0.9 31 6-36 41-73 (81)
453 2qor_A Guanylate kinase; phosp 28.6 34 0.0012 30.4 3.1 23 103-125 12-34 (204)
454 3lua_A Response regulator rece 28.6 1.8E+02 0.006 23.1 7.5 75 465-539 50-128 (140)
455 1kag_A SKI, shikimate kinase I 28.3 37 0.0013 29.0 3.2 21 104-124 5-25 (173)
456 1tq1_A AT5G66040, senescence-a 28.1 54 0.0018 26.5 4.0 37 435-476 81-118 (129)
457 2i1q_A DNA repair and recombin 28.0 30 0.001 33.4 2.9 24 103-126 98-121 (322)
458 3nwj_A ATSK2; P loop, shikimat 27.9 44 0.0015 31.0 3.8 24 103-126 48-71 (250)
459 3tlx_A Adenylate kinase 2; str 27.9 39 0.0013 31.1 3.5 25 103-127 29-53 (243)
460 1zd8_A GTP:AMP phosphotransfer 27.9 29 0.00099 31.5 2.5 23 103-125 7-29 (227)
461 4h1g_A Maltose binding protein 27.8 32 0.0011 37.7 3.2 18 103-120 462-480 (715)
462 2wwf_A Thymidilate kinase, put 27.7 39 0.0013 30.0 3.4 25 103-127 10-34 (212)
463 2xb4_A Adenylate kinase; ATP-b 27.7 39 0.0013 30.5 3.4 22 106-127 3-24 (223)
464 3nhv_A BH2092 protein; alpha-b 27.5 60 0.0021 27.0 4.3 36 435-475 71-108 (144)
465 2vli_A Antibiotic resistance p 27.4 24 0.00081 30.6 1.8 22 104-125 6-27 (183)
466 2lqo_A Putative glutaredoxin R 27.3 2E+02 0.0068 21.6 6.8 57 437-499 4-61 (92)
467 1zp6_A Hypothetical protein AT 27.2 32 0.0011 29.9 2.7 22 103-124 9-30 (191)
468 1oyw_A RECQ helicase, ATP-depe 27.0 1.4E+02 0.0047 31.1 7.9 79 417-504 47-126 (523)
469 2qsj_A DNA-binding response re 26.8 1.2E+02 0.0041 24.7 6.3 18 520-537 106-123 (154)
470 3fmo_B ATP-dependent RNA helic 26.8 1.6E+02 0.0054 27.9 7.7 95 417-520 138-243 (300)
471 2z0h_A DTMP kinase, thymidylat 26.7 47 0.0016 28.9 3.7 22 106-127 3-24 (197)
472 3ez2_A Plasmid partition prote 26.6 42 0.0014 33.6 3.7 34 106-139 112-149 (398)
473 4eun_A Thermoresistant glucoki 26.5 47 0.0016 29.3 3.6 23 103-125 29-51 (200)
474 1fuu_A Yeast initiation factor 26.5 2.5E+02 0.0085 27.3 9.6 96 417-520 65-170 (394)
475 3uie_A Adenylyl-sulfate kinase 26.5 44 0.0015 29.5 3.4 25 103-127 25-49 (200)
476 2v54_A DTMP kinase, thymidylat 26.4 42 0.0014 29.5 3.3 23 103-125 4-26 (204)
477 1nn5_A Similar to deoxythymidy 26.4 44 0.0015 29.6 3.5 25 103-127 9-33 (215)
478 3m6a_A ATP-dependent protease 26.3 41 0.0014 35.4 3.7 26 102-127 107-132 (543)
479 4akg_A Glutathione S-transfera 26.0 70 0.0024 40.7 6.0 61 69-144 904-965 (2695)
480 1dz3_A Stage 0 sporulation pro 26.0 1.7E+02 0.0058 22.8 6.9 75 465-539 48-124 (130)
481 3dzd_A Transcriptional regulat 25.9 1.7E+02 0.0059 28.7 8.0 108 101-269 150-270 (368)
482 1p9r_A General secretion pathw 25.6 73 0.0025 32.1 5.2 21 105-125 169-189 (418)
483 3heb_A Response regulator rece 25.6 1.8E+02 0.0062 23.5 7.2 22 438-459 6-27 (152)
484 1ko7_A HPR kinase/phosphatase; 25.5 35 0.0012 32.9 2.7 23 103-125 144-166 (314)
485 3cz5_A Two-component response 25.0 97 0.0033 25.3 5.3 17 521-537 108-124 (153)
486 3hix_A ALR3790 protein; rhodan 24.8 51 0.0017 25.6 3.1 36 435-475 51-87 (106)
487 2hhg_A Hypothetical protein RP 24.8 63 0.0021 26.4 3.9 36 435-475 85-121 (139)
488 4akg_A Glutathione S-transfera 24.7 37 0.0013 43.1 3.3 22 103-124 1267-1288(2695)
489 2ehv_A Hypothetical protein PH 24.7 1.4E+02 0.0049 26.9 6.8 45 103-149 30-75 (251)
490 1xg8_A Hypothetical protein SA 24.6 1.5E+02 0.005 23.0 5.3 63 445-508 28-94 (111)
491 1qvr_A CLPB protein; coiled co 24.5 90 0.0031 34.9 6.2 25 104-128 589-613 (854)
492 3ly5_A ATP-dependent RNA helic 24.5 4E+02 0.014 24.2 10.4 95 417-518 98-207 (262)
493 1hv8_A Putative ATP-dependent 24.4 2.6E+02 0.0091 26.6 9.2 96 417-520 51-155 (367)
494 3iuy_A Probable ATP-dependent 24.0 2.1E+02 0.0072 25.4 7.8 77 435-519 93-174 (228)
495 3crn_A Response regulator rece 23.9 1.6E+02 0.0055 23.1 6.4 20 438-457 5-24 (132)
496 2pez_A Bifunctional 3'-phospho 23.9 53 0.0018 28.2 3.4 25 103-127 5-29 (179)
497 1j8m_F SRP54, signal recogniti 23.8 56 0.0019 31.2 3.8 35 105-141 100-134 (297)
498 2q5c_A NTRC family transcripti 23.8 3.1E+02 0.011 23.9 8.6 92 436-540 4-95 (196)
499 3tau_A Guanylate kinase, GMP k 23.5 51 0.0017 29.3 3.3 22 103-124 8-29 (208)
500 2ga8_A Hypothetical 39.9 kDa p 23.5 49 0.0017 32.5 3.3 23 105-127 26-48 (359)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-78 Score=687.13 Aligned_cols=517 Identities=21% Similarity=0.293 Sum_probs=390.2
Q ss_pred cccCCCCCCCCcchhhhhhcCCCC---CccccccCC--CCCCCCCCCCCCCCcCCCCceeeecChh-HHhcccHHHHHHH
Q 006698 5 KDIDPPFATSPSRRAEWREYNNVD---PSFLDDLNS--RDSGFDSQTGCDPFTHAQGTVWELVPRD-VRKKMFPHQREGF 78 (635)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~-l~~~L~p~Q~~~v 78 (635)
.+|++||..+||+.++|+....+. .+.++.+.. ................+........|+. ...+|||||++|+
T Consensus 166 ~~yLvKW~~L~y~~~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~Lr~yQ~egv 245 (800)
T 3mwy_W 166 LQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFIKGGELRDFQLTGI 245 (800)
T ss_dssp CBCCEEETTSCSTTCBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCCCCCSCCCCCCCCSSCCTTCCSSCCCTHHHHHH
T ss_pred eEEEEEecCCCcccccccchhhhhhhhHHHHHHHHHhhhcccCCcchhcccccCCcccccccCCCccCCCCcCHHHHHHH
Confidence 479999999999999998875321 122222211 0000000000001111111112223322 3568999999999
Q ss_pred HHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh-CCCCCcEEEeCccchHHHHHHHHHhcC
Q 006698 79 EFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAPRSMLLTWEEEFKKWGI 157 (635)
Q Consensus 79 ~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~-~~~~~~LIv~P~~l~~qW~~E~~~~~~ 157 (635)
+||+..+.. ++||||||+||+|||+++++++..++.. ...+++|||||.+++.||.+|+.+|+|
T Consensus 246 ~~l~~~~~~---------------~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~~p 310 (800)
T 3mwy_W 246 NWMAFLWSK---------------GDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAP 310 (800)
T ss_dssp HHHHHHHTT---------------TCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHHST
T ss_pred HHHHHHhhc---------------CCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHHHHHCC
Confidence 999877654 6799999999999999999999877544 445678999999999999999999999
Q ss_pred CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhhhhccCCCEEE
Q 006698 158 DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFV 237 (635)
Q Consensus 158 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~~~~~~~~~vI 237 (635)
++++..+.+...... ............ ........++|+|+||+++.+... .+....|++||
T Consensus 311 ~~~v~~~~g~~~~r~----~~~~~~~~~~~~---------~~~~~~~~~dvvitTy~~l~~~~~-----~l~~~~w~~vI 372 (800)
T 3mwy_W 311 DLNCICYMGNQKSRD----TIREYEFYTNPR---------AKGKKTMKFNVLLTTYEYILKDRA-----ELGSIKWQFMA 372 (800)
T ss_dssp TCCEEECCCSSHHHH----HHHHHHSCSCC--------------CCCCCSEEEECTTHHHHTHH-----HHHTSEEEEEE
T ss_pred CceEEEEeCCHHHHH----HHHHHHhhcccc---------ccccccccCCEEEecHHHHHhhHH-----HHhcCCcceee
Confidence 999888776432211 110000000000 000113467899999999987542 24444699999
Q ss_pred EeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhhhhHhhhhhhhhhhhh
Q 006698 238 FDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGR 317 (635)
Q Consensus 238 vDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (635)
|||||++||..++.++++..+++.++|+|||||++|++.|+|++++|+.|+.++....+. +..
T Consensus 373 vDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~-~~~---------------- 435 (800)
T 3mwy_W 373 VDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEID-FEN---------------- 435 (800)
T ss_dssp ETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC----------C----------------
T ss_pred hhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhc-ccc----------------
Confidence 999999999999999999999999999999999999999999999999999876544321 100
Q ss_pred ccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhh-------------hhHHHHHH
Q 006698 318 CANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGV-------------KSFVELNY 384 (635)
Q Consensus 318 ~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~-------------~~~~~~~~ 384 (635)
........+..|+..+.|+++||++.++...+|++.+.++.++|++.|+++|+.+... ...+....
T Consensus 436 -~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~ 514 (800)
T 3mwy_W 436 -QDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMN 514 (800)
T ss_dssp -CTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHH
T ss_pred -cchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHH
Confidence 0012234578899999999999999999999999999999999999999999987653 25667788
Q ss_pred HHhhhcCCCCCCCccccccCc-------cchHHHhhcccCccccchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHH
Q 006698 385 CVSLLSVHPSLLPQQFFESFD-------VDSAKLARLKLDPEAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQ 455 (635)
Q Consensus 385 ~~~~~~~~p~l~~~~~~~~~~-------~~~~~l~~~~~~~~~s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~ 455 (635)
.++++|+||.++......... .....+.. ....++|+..|.+++... .++|+||||+++.+++.|.+.
T Consensus 515 ~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~ 591 (800)
T 3mwy_W 515 ELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRG---LIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDY 591 (800)
T ss_dssp HHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHH---HHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHH
T ss_pred HHHHHhcChhhhcchHHHHHHhcccccccHHHHHHH---hhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHH
Confidence 899999999988654221110 00011111 123588999999999887 789999999999999999999
Q ss_pred HHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhh
Q 006698 456 LRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535 (635)
Q Consensus 456 L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~ 535 (635)
|... |+.+.+++|+++.++|+++++.|++++++..|+|+||++||+||||++|++||+||++|||..+.||+||+
T Consensus 592 L~~~-----g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~ 666 (800)
T 3mwy_W 592 LSIK-----GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARA 666 (800)
T ss_dssp HHHH-----TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTT
T ss_pred HHhC-----CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHH
Confidence 9987 99999999999999999999999987777778999999999999999999999999999999999999999
Q ss_pred hhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhhhccccccCCCC
Q 006698 536 YRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDGG 580 (635)
Q Consensus 536 ~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~~~~~~~~~~~~ 580 (635)
||+||+++|+||+|+++||+|++|++++.+|..+.+++++.....
T Consensus 667 ~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~ 711 (800)
T 3mwy_W 667 HRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTD 711 (800)
T ss_dssp SCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC---------
T ss_pred HhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHccCccc
Confidence 999999999999999999999999999999999999999876543
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.9e-75 Score=645.33 Aligned_cols=478 Identities=27% Similarity=0.412 Sum_probs=379.2
Q ss_pred ecChhHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCC-----CCC
Q 006698 61 LVPRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP-----RCR 135 (635)
Q Consensus 61 ~~p~~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~-----~~~ 135 (635)
.+|+.+...|||||++|++||++...+. ....++||||||+||+|||+++++++..++..++ .++
T Consensus 47 ~~~p~l~~~LrpyQ~~gv~~l~~~~~~~----------~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~ 116 (644)
T 1z3i_X 47 VVDPVLSKVLRPHQREGVKFLWDCVTGR----------RIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDK 116 (644)
T ss_dssp ECCHHHHTTCCHHHHHHHHHHHHHHTTS----------SSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSC
T ss_pred eeChhhhhcccHHHHHHHHHHHHhhhcc----------cccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCc
Confidence 4566899999999999999999876431 1123679999999999999999999998877664 245
Q ss_pred cEEEeCccchHHHHHHHHHhcCC-CcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHH
Q 006698 136 PVIIAPRSMLLTWEEEFKKWGID-IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYR 214 (635)
Q Consensus 136 ~LIv~P~~l~~qW~~E~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~ 214 (635)
+|||||.+++.||.+|+.+|.+. +.+..+.+ +.... ........... .......+|+|+||+
T Consensus 117 ~LiV~P~sll~qW~~E~~~~~~~~~~~~~~~~----g~~~~-~~~~~~~~~~~------------~~~~~~~~vvi~ty~ 179 (644)
T 1z3i_X 117 VIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDG----GSKDE-IDSKLVNFISQ------------QGMRIPTPILIISYE 179 (644)
T ss_dssp EEEEECHHHHHHHHHHHHHHHGGGCCEEEECS----SCHHH-HHHHHHHHHCC------------CSSCCSCCEEEEEHH
T ss_pred EEEEecHHHHHHHHHHHHHHcCCCeeEEEEeC----CCHHH-HHHHHHHHHHh------------cCCCCCCcEEEeeHH
Confidence 79999999999999999999865 33333332 11111 10001111000 001135789999999
Q ss_pred HHHHhhcchhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHH
Q 006698 215 LFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294 (635)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~ 294 (635)
++..... .+....|++||+||||++||..++.++++..+++.++|+|||||++|++.|+|++++|++|+.+++..
T Consensus 180 ~l~~~~~-----~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~ 254 (644)
T 1z3i_X 180 TFRLHAE-----VLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQ 254 (644)
T ss_dssp HHHHHTT-----TTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHH
T ss_pred HHHhhHH-----HhhcCCccEEEEECceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHH
Confidence 9987542 24456799999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHH-hhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHH
Q 006698 295 TVR-KSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAV 373 (635)
Q Consensus 295 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~ 373 (635)
.|. .|..++..+.......... ......+.+|+.++.++++||++.++...||++.+.++.+++++.|+++|+.+
T Consensus 255 ~F~~~f~~pi~~~~~~~~~~~~~----~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~ 330 (644)
T 1z3i_X 255 EFKKRFEIPILKGRDADASDKDR----AAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLF 330 (644)
T ss_dssp HHHHHTHHHHHHHHSTTCCSHHH----HHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHH
T ss_pred HHHHhhcchhhhcCCcCCCHHHH----HHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHH
Confidence 754 4444444433221111100 12345678899999999999999999999999999999999999999999998
Q ss_pred hhhh-------------hHHHHHHHHhhhcCCCCCCCccccccCccchHHH-------hhcccCccccchHHHHHHHHHh
Q 006698 374 EGVK-------------SFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKL-------ARLKLDPEAGIKTRFLLILLEL 433 (635)
Q Consensus 374 ~~~~-------------~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l-------~~~~~~~~~s~K~~~l~~~l~~ 433 (635)
.... ..+.....++++|+||.++........+.....+ ......+..++|+..+..++..
T Consensus 331 ~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~ 410 (644)
T 1z3i_X 331 LKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAM 410 (644)
T ss_dssp HHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHH
Confidence 6432 4566778899999999886432111000000000 0011233468899988888876
Q ss_pred c---CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCccccccc
Q 006698 434 S---TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINL 510 (635)
Q Consensus 434 ~---~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL 510 (635)
. .++|+||||+++.+++.|...|... |+.+.+++|+++.++|++++++|++++....|+|+||++||+||||
T Consensus 411 ~~~~~~~k~lIFs~~~~~~~~l~~~l~~~-----g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl 485 (644)
T 1z3i_X 411 TRTTTSDKVVLVSNYTQTLDLFEKLCRNR-----RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNL 485 (644)
T ss_dssp HHHHCCCEEEEEESCHHHHHHHHHHHHHH-----TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCC
T ss_pred HhhcCCCEEEEEEccHHHHHHHHHHHHHC-----CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCccc
Confidence 5 6899999999999999999999987 9999999999999999999999998655556888999999999999
Q ss_pred ccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhhhccccccCCC
Q 006698 511 VGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDG 579 (635)
Q Consensus 511 ~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~~~~~~~~~~~ 579 (635)
++|++||+||++|||+.+.||+||+||+||+++|+||+|++++|+|++|++++..|..+++.++++...
T Consensus 486 ~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~~ 554 (644)
T 1z3i_X 486 IGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQD 554 (644)
T ss_dssp TTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSS
T ss_pred ccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999999999999999999999999999999999999999999999999987543
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.7e-69 Score=586.12 Aligned_cols=430 Identities=25% Similarity=0.322 Sum_probs=363.0
Q ss_pred ChhHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCc
Q 006698 63 PRDVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPR 142 (635)
Q Consensus 63 p~~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~ 142 (635)
|..++..|+|||++|+.|++..... ++||||||+||+|||+++++++..+...++.+++|||||.
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~~~---------------~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~ 95 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMNKL---------------GFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL 95 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHHHT---------------TCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECS
T ss_pred ChhhhccchHHHHHHHHHHHHHhhC---------------CCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccH
Confidence 5578889999999999999765443 5699999999999999999999888877777899999999
Q ss_pred cchHHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcc
Q 006698 143 SMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222 (635)
Q Consensus 143 ~l~~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~ 222 (635)
+++.||.+|+.+|.|++++..+++.... . .....+|+|+||+++.+...
T Consensus 96 ~l~~qw~~e~~~~~~~~~v~~~~g~~~~-----~-------------------------~~~~~~ivi~t~~~l~~~~~- 144 (500)
T 1z63_A 96 SVLKNWEEELSKFAPHLRFAVFHEDRSK-----I-------------------------KLEDYDIILTTYAVLLRDTR- 144 (500)
T ss_dssp TTHHHHHHHHHHHCTTSCEEECSSSTTS-----C-------------------------CGGGSSEEEEEHHHHTTCHH-
T ss_pred HHHHHHHHHHHHHCCCceEEEEecCchh-----c-------------------------cccCCcEEEeeHHHHhccch-
Confidence 9999999999999998888776653210 0 02357899999999876431
Q ss_pred hhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhh-h
Q 006698 223 DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG-R 301 (635)
Q Consensus 223 ~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~-~ 301 (635)
+....|++||+||||+++|..++.++++..+++.++|+|||||++|++.|+|++++|++|+.+++...|.... .
T Consensus 145 -----l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~ 219 (500)
T 1z63_A 145 -----LKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFAT 219 (500)
T ss_dssp -----HHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHH
T ss_pred -----hcCCCcCEEEEeCccccCCHhHHHHHHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhcc
Confidence 4445799999999999999999999999999999999999999999999999999999999998877654332 2
Q ss_pred hhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhccccc--ccccCCCceEEEEEeCCcHHHHHHHHHHhhh---
Q 006698 302 EISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTV--LQESLPGLRHSVVILQPDEFQKRLCKAVEGV--- 376 (635)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~--~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~--- 376 (635)
++.. .......+|+..+.++++||++.+ +...+|++.+..+.+++++.|+++|+.+...
T Consensus 220 ~~~~----------------~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~ 283 (500)
T 1z63_A 220 PIKK----------------GDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFN 283 (500)
T ss_dssp HHHT----------------TCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTT
T ss_pred cccc----------------ccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHH
Confidence 2111 234566789999999999998875 5568999999999999999999999876542
Q ss_pred -----------hhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc--CCCeEEEEc
Q 006698 377 -----------KSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS--TNEKVLVFS 443 (635)
Q Consensus 377 -----------~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~--~~~kviIFs 443 (635)
...+.....++++|+||.++... ......++|+..+.+++... .++|+||||
T Consensus 284 ~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~---------------~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~ 348 (500)
T 1z63_A 284 NIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGG---------------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFT 348 (500)
T ss_dssp TTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCS---------------CCCSTTCHHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCc---------------cchhhcchhHHHHHHHHHHHHccCCcEEEEE
Confidence 23456677889999999775432 11234578999999999876 889999999
Q ss_pred CChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCC
Q 006698 444 QYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVW 523 (635)
Q Consensus 444 ~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~w 523 (635)
+++.+++.+.+.|...+ |+.+..++|+++.++|++++++|+++ ++++|+|+||+++|+|+||++|++||++|++|
T Consensus 349 ~~~~~~~~l~~~l~~~~----~~~~~~~~g~~~~~~R~~~~~~F~~~-~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~ 423 (500)
T 1z63_A 349 QFVDMGKIIRNIIEKEL----NTEVPFLYGELSKKERDDIISKFQNN-PSVKFIVLSVKAGGFGINLTSANRVIHFDRWW 423 (500)
T ss_dssp SCHHHHHHHHHHHHHHH----TCCCCEEETTSCHHHHHHHHHHHHHC-TTCCCCEEECCCC-CCCCCTTCSEEEESSCCS
T ss_pred ehHHHHHHHHHHHHHhh----CCCeEEEECCCCHHHHHHHHHHhcCC-CCCCEEEEecccccCCCchhhCCEEEEeCCCC
Confidence 99999999999998753 78899999999999999999999974 34677888999999999999999999999999
Q ss_pred ChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhhhccccccCCC
Q 006698 524 NPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPSSDG 579 (635)
Q Consensus 524 np~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~~~~~~~~~~~ 579 (635)
||..+.||+||++|+||+++|+||+|++++|+|+++++++..|..+++.++++.+.
T Consensus 424 ~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~~~~~~~ 479 (500)
T 1z63_A 424 NPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDS 479 (500)
T ss_dssp CC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSGGGSTTG
T ss_pred CcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 99999999999999999999999999999999999999999999999999987543
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.3e-53 Score=487.39 Aligned_cols=450 Identities=16% Similarity=0.141 Sum_probs=327.5
Q ss_pred HHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccch
Q 006698 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSML 145 (635)
Q Consensus 66 l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~ 145 (635)
...+|+|||++++.|++... +++|||||+||+|||++|++++..++..+..+++|||||.+|+
T Consensus 150 ~~~~LrpyQ~eav~~~l~~~-----------------~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl 212 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRRH-----------------APRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQ 212 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHSS-----------------SCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTH
T ss_pred CCCCCcHHHHHHHHHHHHhc-----------------CCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCHHHH
Confidence 34679999999999998742 4689999999999999999999999888888899999999999
Q ss_pred HHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhh
Q 006698 146 LTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225 (635)
Q Consensus 146 ~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~ 225 (635)
.||..|+.+++ ++++..+++... .. ..... .......+|+|+||+++.+.. ...
T Consensus 213 ~Qw~~E~~~~f-~l~v~v~~~~~~-----~~------~~~~~------------~~~~~~~dIvI~T~~~L~~~~--~~~ 266 (968)
T 3dmq_A 213 HQWLVEMLRRF-NLRFALFDDERY-----AE------AQHDA------------YNPFDTEQLVICSLDFARRSK--QRL 266 (968)
T ss_dssp HHHHHHHHHHS-CCCCEECCHHHH-----HH------HHHTT------------CSSSTTCSEEEECHHHHHTST--TTT
T ss_pred HHHHHHHHHHh-CCCEEEEccchh-----hh------hhhhc------------ccccccCCEEEEcHHHHhhCH--HHH
Confidence 99999998776 455555433110 00 00000 011245789999999987643 223
Q ss_pred hhhhccCCCEEEEeCCCcCCCcccH---HHHHHHhc--ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhh
Q 006698 226 SGILLDLPGLFVFDEGHTPRNDDTC---MFKALSRI--KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300 (635)
Q Consensus 226 ~~~~~~~~~~vIvDEaH~~kn~~s~---~~~~l~~l--~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~ 300 (635)
..+....|++|||||||+++|..+. .++.+..+ +++++|+|||||++|++.|+|+++.+++|..+++...|....
T Consensus 267 ~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~ 346 (968)
T 3dmq_A 267 EHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQ 346 (968)
T ss_dssp HHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHH
T ss_pred HHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHH
Confidence 3455668999999999999987654 48888888 778899999999999999999999999999888776644322
Q ss_pred hhhhHhh--hhhh--------------------------hhhhhhccCcCcHHHHHHHHHhh-----cchhhhccccccc
Q 006698 301 REISKAK--HASL--------------------------ISSIGRCANHRDDEKLKELKEKI-----APFVNVHKGTVLQ 347 (635)
Q Consensus 301 ~~~~~~~--~~~~--------------------------~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~rr~~~~~~ 347 (635)
..+.... .... ..................+..++ ...+.|.++..+
T Consensus 347 ~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i- 425 (968)
T 3dmq_A 347 KNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV- 425 (968)
T ss_dssp HHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC-
T ss_pred HhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhh-
Confidence 1111000 0000 00000000000011112223333 234455556666
Q ss_pred ccCCCceEEEEEeCCcHHHHHHHHHHhhhhh-HHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHH
Q 006698 348 ESLPGLRHSVVILQPDEFQKRLCKAVEGVKS-FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRF 426 (635)
Q Consensus 348 ~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~-~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~ 426 (635)
..+|......+.+++++.++..|+....... .... .....+.+|......... ........+.|...
T Consensus 426 ~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~pe~~~~~l~~----------~~~~~~~~~~K~~~ 493 (968)
T 3dmq_A 426 KGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAE--DRARDMLYPERIYQEFEG----------DNATWWNFDPRVEW 493 (968)
T ss_dssp CCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGG--GGTHHHHCSGGGTTTTTS----------SSCCTTTTSHHHHH
T ss_pred cccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhH--HHHhhhcChHHHHHHhhh----------hhhcccCccHHHHH
Confidence 4889988899999999999888876332110 0000 000111222211111000 01122345789999
Q ss_pred HHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCccc
Q 006698 427 LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCE 506 (635)
Q Consensus 427 l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~ 506 (635)
|.+++...++.|+||||+++.+++.+...|...+ |+.+..++|+++..+|+.+++.|+++.+.++||| +|+++++
T Consensus 494 L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~----g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLv-aT~v~~~ 568 (968)
T 3dmq_A 494 LMGYLTSHRSQKVLVICAKAATALQLEQVLRERE----GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLL-CSEIGSE 568 (968)
T ss_dssp HHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTT----CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEE-CSCCTTC
T ss_pred HHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEE-ecchhhc
Confidence 9999998889999999999999999999999642 8999999999999999999999998544477776 7899999
Q ss_pred ccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhhhcccccc
Q 006698 507 GINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFPS 576 (635)
Q Consensus 507 GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~~~~~~~~ 576 (635)
|+|+++|++||+||+||||..+.|++||++|.||++.|.||++++++|+|+.+++.+.+|..+....+.+
T Consensus 569 GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~~ 638 (968)
T 3dmq_A 569 GRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPT 638 (968)
T ss_dssp SSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCSS
T ss_pred CCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999887765543
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.2e-46 Score=400.27 Aligned_cols=432 Identities=15% Similarity=0.096 Sum_probs=273.0
Q ss_pred HhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCc-cch
Q 006698 67 RKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPR-SML 145 (635)
Q Consensus 67 ~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~ 145 (635)
..+|+|||.+++.++++ + ++|++++||+|||+++++++...+. .+.+++|||||. +|+
T Consensus 7 ~~~l~~~Q~~~i~~~~~-------------------~-~~ll~~~tG~GKT~~~~~~~~~~~~-~~~~~~liv~P~~~L~ 65 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKE-------------------T-NCLIVLPTGLGKTLIAMMIAEYRLT-KYGGKVLMLAPTKPLV 65 (494)
T ss_dssp HHCCCHHHHHHHHHGGG-------------------S-CEEEECCTTSCHHHHHHHHHHHHHH-HSCSCEEEECSSHHHH
T ss_pred CCCccHHHHHHHHHHhh-------------------C-CEEEEcCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHH
Confidence 34799999999999864 3 8999999999999999999877765 456689999995 899
Q ss_pred HHHHHHHHHhc--CCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcch
Q 006698 146 LTWEEEFKKWG--IDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD 223 (635)
Q Consensus 146 ~qW~~E~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~ 223 (635)
.||.+++.+|. +..++..+++...... ... .....+|+|+||+.+.......
T Consensus 66 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~----~~~----------------------~~~~~~ivv~T~~~l~~~~~~~ 119 (494)
T 1wp9_A 66 LQHAESFRRLFNLPPEKIVALTGEKSPEE----RSK----------------------AWARAKVIVATPQTIENDLLAG 119 (494)
T ss_dssp HHHHHHHHHHBCSCGGGEEEECSCSCHHH----HHH----------------------HHHHCSEEEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcchhheEEeeCCcchhh----hhh----------------------hccCCCEEEecHHHHHHHHhcC
Confidence 99999999996 4445555554321110 000 0125689999999998765431
Q ss_pred hhhhhhccCCCEEEEeCCCcCCCcccHH--HHHHHh-cccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhh
Q 006698 224 ELSGILLDLPGLFVFDEGHTPRNDDTCM--FKALSR-IKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300 (635)
Q Consensus 224 ~~~~~~~~~~~~vIvDEaH~~kn~~s~~--~~~l~~-l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~ 300 (635)
.+....|++||+||||++++..+.. .+.+.. .+..++++|||||. |+..+++.++.++.+.............
T Consensus 120 ---~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 195 (494)
T 1wp9_A 120 ---RISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDV 195 (494)
T ss_dssp ---SCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTT
T ss_pred ---CcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHH
Confidence 2334568999999999998753322 222222 25788999999999 7788888888877643221110000000
Q ss_pred hhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcH-----HHHHHHHHHhh
Q 006698 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDE-----FQKRLCKAVEG 375 (635)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~-----~q~~~y~~~~~ 375 (635)
..+... . ...............+...+.+.+.++.+......+..... ...+. ....++..+..
T Consensus 196 ~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 264 (494)
T 1wp9_A 196 RPYVKG---I----RFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSS----PDIPKKEVLRAGQIINEEMAK 264 (494)
T ss_dssp GGGCCC---C----CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCC----TTSCHHHHHHHHHHHHHHHTT
T ss_pred HHhcCC---C----ceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccC----CCcchhHHHHHHHHHHHHhhc
Confidence 000000 0 00000012234456677777777776655433222221110 01111 11111111110
Q ss_pred h-----------------------------hhHHHHHHHHhhhcCCCCCCCcc-ccccCc--cchHHHhhcccCccccch
Q 006698 376 V-----------------------------KSFVELNYCVSLLSVHPSLLPQQ-FFESFD--VDSAKLARLKLDPEAGIK 423 (635)
Q Consensus 376 ~-----------------------------~~~~~~~~~~~~~~~~p~l~~~~-~~~~~~--~~~~~l~~~~~~~~~s~K 423 (635)
. .........+...+.++...... ...... .....+.........++|
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 344 (494)
T 1wp9_A 265 GNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPK 344 (494)
T ss_dssp TCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChH
Confidence 0 00000111111111111000000 000000 000000000111246789
Q ss_pred HHHHHHHHHh----cCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeC--------CCCHHHHHHHHHHhcCCC
Q 006698 424 TRFLLILLEL----STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDG--------KQDVKKRQSSINVLNDPS 491 (635)
Q Consensus 424 ~~~l~~~l~~----~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G--------~~~~~~r~~~i~~F~~~~ 491 (635)
+..|.+++.. ..+.|+||||+++.+++.+.+.|... |+.+..++| +++.++|+++++.|++
T Consensus 345 ~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~-- 417 (494)
T 1wp9_A 345 MDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD-----GIKAKRFVGQASKENDRGLSQREQKLILDEFAR-- 417 (494)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT-----TCCEEEECCSSCC-------CCHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc-----CCCcEEEeccccccccccCCHHHHHHHHHHHhc--
Confidence 9999999987 47899999999999999999999987 999999999 8999999999999997
Q ss_pred CCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhhhc
Q 006698 492 SQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSN 571 (635)
Q Consensus 492 ~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~~~ 571 (635)
++++||| +|+++++|+|+++|++||++|++|||..+.||+||++|.|| +.+|+|++++|+|+.++.++..|..+++
T Consensus 418 ~~~~vLv-~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 418 GEFNVLV-ATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp TSCSEEE-ECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred CCceEEE-ECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 4466655 79999999999999999999999999999999999999998 8999999999999999999999987764
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.5e-42 Score=372.20 Aligned_cols=363 Identities=16% Similarity=0.137 Sum_probs=250.9
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCc-cchH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPR-SMLL 146 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~ 146 (635)
.+|+|||.+++.++++ ++++||+++||+|||++++.++... .+++|||||. +|+.
T Consensus 92 ~~l~~~Q~~ai~~i~~-------------------~~~~ll~~~TGsGKT~~~l~~i~~~-----~~~~Lvl~P~~~L~~ 147 (472)
T 2fwr_A 92 ISLRDYQEKALERWLV-------------------DKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAE 147 (472)
T ss_dssp CCBCHHHHHHHHHHTT-------------------TTEEEEECCTTSCHHHHHHHHHHHH-----CSCEEEEESSHHHHH
T ss_pred CCcCHHHHHHHHHHHh-------------------cCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEECCHHHHH
Confidence 4799999999998754 3469999999999999999888654 4688999996 9999
Q ss_pred HHHHHHHHhcCCCc-ccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhh
Q 006698 147 TWEEEFKKWGIDIP-FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225 (635)
Q Consensus 147 qW~~E~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~ 225 (635)
||.+++.+| +.+ +..+++.. ....+|+|+||+.+.....
T Consensus 148 Q~~~~~~~~--~~~~v~~~~g~~----------------------------------~~~~~Ivv~T~~~l~~~~~---- 187 (472)
T 2fwr_A 148 QWKERLGIF--GEEYVGEFSGRI----------------------------------KELKPLTVSTYDSAYVNAE---- 187 (472)
T ss_dssp HHHHHGGGG--CGGGEEEBSSSC----------------------------------BCCCSEEEEEHHHHHHTHH----
T ss_pred HHHHHHHhC--CCcceEEECCCc----------------------------------CCcCCEEEEEcHHHHHHHH----
Confidence 999999995 344 44443311 1245799999998876442
Q ss_pred hhhhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhhhhH
Q 006698 226 SGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREISK 305 (635)
Q Consensus 226 ~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~~~~ 305 (635)
.+...|++||+||||++.+.... ..+..+++.++++|||||..++-.+
T Consensus 188 --~~~~~~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~---------------------------- 235 (472)
T 2fwr_A 188 --KLGNRFMLLIFDEVHHLPAESYV--QIAQMSIAPFRLGLTATFEREDGRH---------------------------- 235 (472)
T ss_dssp --HHTTTCSEEEEETGGGTTSTTTH--HHHHTCCCSEEEEEESCCCCTTSGG----------------------------
T ss_pred --HhcCCCCEEEEECCcCCCChHHH--HHHHhcCCCeEEEEecCccCCCCHH----------------------------
Confidence 22345899999999999987543 3555668889999999998654221
Q ss_pred hhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhccccccc-ccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHHHHHH
Q 006698 306 AKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQ-ESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY 384 (635)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~-~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~~~~~ 384 (635)
..+...+.+.+.++...++. ..+++.....+.+++++.++..|+.+.....
T Consensus 236 ----------------------~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 287 (472)
T 2fwr_A 236 ----------------------EILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYK------ 287 (472)
T ss_dssp ----------------------GSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHH------
T ss_pred ----------------------HHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHH------
Confidence 01222333444443333332 2366666677889999999888876543210
Q ss_pred HHhhhcCCCCC-------CCcccc----cc--CccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHH
Q 006698 385 CVSLLSVHPSL-------LPQQFF----ES--FDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTL 451 (635)
Q Consensus 385 ~~~~~~~~p~l-------~~~~~~----~~--~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~ 451 (635)
.......+ +..... .. .................+.|...+.+++....+.|+||||++...++.
T Consensus 288 ---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~ 364 (472)
T 2fwr_A 288 ---QFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYR 364 (472)
T ss_dssp ---SCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHH
T ss_pred ---HHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHH
Confidence 00000000 000000 00 000000000001112346789999999998889999999999999999
Q ss_pred HHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhh
Q 006698 452 IMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531 (635)
Q Consensus 452 l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa 531 (635)
+.+.|. +..++|+++..+|+++++.|++ ++++||+ +|+++++|+|++++++||++|++|||..+.|+
T Consensus 365 l~~~l~----------~~~~~g~~~~~~R~~~~~~F~~--g~~~vLv-~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~ 431 (472)
T 2fwr_A 365 ISKVFL----------IPAITHRTSREEREEILEGFRT--GRFRAIV-SSQVLDEGIDVPDANVGVIMSGSGSAREYIQR 431 (472)
T ss_dssp HHHHTT----------CCBCCSSSCSHHHHTHHHHHHH--SSCSBCB-CSSCCCSSSCSCCBSEEEEECCSSCCHHHHHH
T ss_pred HHHHhC----------cceeeCCCCHHHHHHHHHHHhC--CCCCEEE-EcCchhcCcccccCcEEEEECCCCCHHHHHHH
Confidence 988774 2458999999999999999997 5567765 79999999999999999999999999999999
Q ss_pred hhhhhhcCCc-ceEEEEEEEeCCChHHHHHHHHHHhhhhh
Q 006698 532 ISRAYRLGQK-RVVHVYHLITSETLEWDKLRRQARKVWWS 570 (635)
Q Consensus 532 ~gR~~R~GQ~-~~V~vy~li~~~tiEe~i~~~~~~K~~~~ 570 (635)
+||++|.||. +.|.+|.|++++|+|+.+.++..+|.+.+
T Consensus 432 ~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~a 471 (472)
T 2fwr_A 432 LGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKGA 471 (472)
T ss_dssp HHHSBCCCTTTCCEEEEEEEECSCC---------------
T ss_pred HhhccCCCCCCceEEEEEEEeCCCchHHHHHHHHHhhccC
Confidence 9999999999 79999999999999999999998887654
No 7
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=1.2e-40 Score=326.08 Aligned_cols=221 Identities=27% Similarity=0.312 Sum_probs=170.6
Q ss_pred hhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhh--------------hhHHHHHHHHhhhcCCCCCCCcccccc
Q 006698 338 VNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGV--------------KSFVELNYCVSLLSVHPSLLPQQFFES 403 (635)
Q Consensus 338 ~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~--------------~~~~~~~~~~~~~~~~p~l~~~~~~~~ 403 (635)
-+||+++++..+||++.+.+++|+||+.|+++|+.+... ...+.....++++|+||.++....
T Consensus 13 ~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~~--- 89 (271)
T 1z5z_A 13 GLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGE--- 89 (271)
T ss_dssp ---------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSC---
T ss_pred cccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHcCCHHHhcCCc---
Confidence 468899999999999999999999999999999987542 134566788999999998865210
Q ss_pred CccchHHHhhcccCccccchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHH
Q 006698 404 FDVDSAKLARLKLDPEAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQ 481 (635)
Q Consensus 404 ~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~ 481 (635)
.....++|+..|.+++... .++|+||||+++.+++.|...|...+ |+.+..++|+++.++|+
T Consensus 90 ------------~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~----g~~~~~l~G~~~~~~R~ 153 (271)
T 1z5z_A 90 ------------QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL----NTEVPFLYGELSKKERD 153 (271)
T ss_dssp ------------CCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHH----CSCCCEECTTSCHHHHH
T ss_pred ------------cccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhc----CCcEEEEECCCCHHHHH
Confidence 1234688999999999887 89999999999999999999998743 88999999999999999
Q ss_pred HHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHH
Q 006698 482 SSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLR 561 (635)
Q Consensus 482 ~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~ 561 (635)
++++.|+++ ++++|+|+||++||+||||++|++||+||+||||..+.||+||+||+||+++|+||+|++++|+|+++++
T Consensus 154 ~~i~~F~~~-~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~ 232 (271)
T 1z5z_A 154 DIISKFQNN-PSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQ 232 (271)
T ss_dssp HHHHHHHHC-TTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHH
T ss_pred HHHHHhcCC-CCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHH
Confidence 999999974 3577889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhccccccCC
Q 006698 562 RQARKVWWSNMVFPSSD 578 (635)
Q Consensus 562 ~~~~K~~~~~~~~~~~~ 578 (635)
++..|..+++.++++.+
T Consensus 233 ~~~~K~~l~~~~~~~~~ 249 (271)
T 1z5z_A 233 LLAFKRSLFKDIISSGD 249 (271)
T ss_dssp HHHHCHHHHTTGGGGTT
T ss_pred HHHHHHHHHHHHHccCc
Confidence 99999999999998753
No 8
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=5e-38 Score=344.93 Aligned_cols=447 Identities=14% Similarity=0.144 Sum_probs=217.1
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCC---CCCcEEEeC-cc
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP---RCRPVIIAP-RS 143 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~---~~~~LIv~P-~~ 143 (635)
.+|+|||.+++.+++. ++++|++++||+|||++++..+...+...+ .+++||||| ..
T Consensus 6 ~~~~~~Q~~~i~~~~~-------------------~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~ 66 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN-------------------GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVP 66 (556)
T ss_dssp --CCHHHHHHHHHHHT-------------------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHH
T ss_pred CCCCHHHHHHHHHHHc-------------------CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHH
Confidence 4699999999999864 568999999999999999988877777655 667899999 58
Q ss_pred chHHHHHHHHHhcC--CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhc
Q 006698 144 MLLTWEEEFKKWGI--DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221 (635)
Q Consensus 144 l~~qW~~E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~ 221 (635)
|+.||.+++.++++ ++++..+.+......... .+....+|+|+|++.+.....
T Consensus 67 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------------------------~~~~~~~i~v~T~~~l~~~~~ 121 (556)
T 4a2p_A 67 VYEQQKNVFKHHFERQGYSVQGISGENFSNVSVE-------------------------KVIEDSDIIVVTPQILVNSFE 121 (556)
T ss_dssp HHHHHHHHHHHHHGGGTCCEEECCCC-----CHH-------------------------HHHHHCSEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCceEEEEeCCCCcchhHH-------------------------HhhCCCCEEEECHHHHHHHHH
Confidence 99999999999976 555555554321111110 012357899999999887664
Q ss_pred chhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhc---------ccCcEEEEecccCCCChhhHHHHHH-------hh
Q 006698 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRI---------KTRRRIILSGTPFQNNFQELENTLS-------LV 285 (635)
Q Consensus 222 ~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l---------~~~~~l~LTgTP~~n~~~el~~ll~-------~l 285 (635)
...+ .....+++||+||||++.+... ....+..+ +..++++|||||..++..++...+. .+
T Consensus 122 ~~~~--~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l 198 (556)
T 4a2p_A 122 DGTL--TSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYL 198 (556)
T ss_dssp SSSC--CCSTTCSEEEEETGGGCSTTSH-HHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHH
T ss_pred hCcc--cccccCCEEEEECCcccCCcch-HHHHHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhc
Confidence 3211 0345689999999999988654 22222222 2367999999999887655544333 22
Q ss_pred hhhhhh----hHHHHHhhhhhhhHhhhhhhhhhhhhccCcCcHHH---HHHHHHhhcchhhhccc-cccc----ccCCCc
Q 006698 286 RQEFGE----VLRTVRKSGREISKAKHASLISSIGRCANHRDDEK---LKELKEKIAPFVNVHKG-TVLQ----ESLPGL 353 (635)
Q Consensus 286 ~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~l~~~~~rr~~-~~~~----~~lp~~ 353 (635)
++.... ....+..|.... ............... ...+...+..+...... ..+. ..+...
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 270 (556)
T 4a2p_A 199 DIQAISTVRENIQELQRFMNKP--------EIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQ 270 (556)
T ss_dssp TCSEEECCCTTHHHHHHHTCCC--------CEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSH
T ss_pred CCeEecchhcchHHHHhcCCCC--------ceEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchh
Confidence 221110 001111111000 000000000011111 11111111111110000 0000 000000
Q ss_pred -----------eEEEEEeCCcHHHHHHHHHHhhhhhHH----------------HHHHHHhhh----cCCCCCCCc-ccc
Q 006698 354 -----------RHSVVILQPDEFQKRLCKAVEGVKSFV----------------ELNYCVSLL----SVHPSLLPQ-QFF 401 (635)
Q Consensus 354 -----------~~~~v~~~~s~~q~~~y~~~~~~~~~~----------------~~~~~~~~~----~~~p~l~~~-~~~ 401 (635)
............+..+|..+......+ .....+... ..+...... ...
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 350 (556)
T 4a2p_A 271 NYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLT 350 (556)
T ss_dssp HHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 000000111112222222221111000 000000000 000000000 000
Q ss_pred ccCccchHHHh-hcccCccccchHHHHHHHHHh----cCCCeEEEEcCChhHHHHHHHHHHhhhc-------ccCCceEE
Q 006698 402 ESFDVDSAKLA-RLKLDPEAGIKTRFLLILLEL----STNEKVLVFSQYIEPLTLIMEQLRHRFN-------WREGQEVL 469 (635)
Q Consensus 402 ~~~~~~~~~l~-~~~~~~~~s~K~~~l~~~l~~----~~~~kviIFs~~~~~~~~l~~~L~~~~~-------~~~g~~~~ 469 (635)
.........+. ........++|+..|.+++.. .++.|+||||+++.+++.|.+.|..... ...|..+.
T Consensus 351 ~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~ 430 (556)
T 4a2p_A 351 AKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRR 430 (556)
T ss_dssp HHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC-------
T ss_pred HHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCc
Confidence 00000000011 111222358899999999875 3789999999999999999999987411 11255566
Q ss_pred EEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEE
Q 006698 470 YMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHL 549 (635)
Q Consensus 470 ~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~l 549 (635)
.++|+++.++|.+++++|++ ++.++||| +|+++++|||+++|++||+||+||||..+.||+|| +| .+++.+|.|
T Consensus 431 ~~~~~~~~~~R~~~~~~F~~-~g~~~vLv-aT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR---~~~g~~~~l 504 (556)
T 4a2p_A 431 DQTTGMTLPSQKGVLDAFKT-SKDNRLLI-ATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILV 504 (556)
T ss_dssp ------------------------CCEEE-EEC-----------CEEEEETCCSCHHHHHHC------------CCEEEE
T ss_pred ccccccCHHHHHHHHHHhcc-cCceEEEE-EcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCceEEEE
Confidence 67788999999999999997 34567665 79999999999999999999999999999999999 54 578899999
Q ss_pred EeCCChHHHHHHHHHHhhhhhcccccc
Q 006698 550 ITSETLEWDKLRRQARKVWWSNMVFPS 576 (635)
Q Consensus 550 i~~~tiEe~i~~~~~~K~~~~~~~~~~ 576 (635)
++++++|+. +.....|..+...++..
T Consensus 505 ~~~~~~~~~-~~~~~~k~~~~~~~i~~ 530 (556)
T 4a2p_A 505 TSKTEVVEN-EKCNRYKEEMMNKAVEK 530 (556)
T ss_dssp ESCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred EeCcchHHH-HHhhHHHHHHHHHHHHH
Confidence 999999988 66677777776665543
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4e-38 Score=357.62 Aligned_cols=442 Identities=14% Similarity=0.140 Sum_probs=221.0
Q ss_pred HhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCC---CCCcEEEeC-c
Q 006698 67 RKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP---RCRPVIIAP-R 142 (635)
Q Consensus 67 ~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~---~~~~LIv~P-~ 142 (635)
...|+|||.+++.+++. ++++|++++||+|||++++..+...+...+ .+++||||| .
T Consensus 246 ~~~l~~~Q~~~i~~~l~-------------------~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~ 306 (797)
T 4a2q_A 246 TKKARSYQIELAQPAIN-------------------GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKV 306 (797)
T ss_dssp --CCCHHHHHHHHHHHT-------------------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSH
T ss_pred CCCCCHHHHHHHHHHHh-------------------CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCH
Confidence 56899999999998854 568999999999999999988887777655 678899999 6
Q ss_pred cchHHHHHHHHHhcC--CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhh
Q 006698 143 SMLLTWEEEFKKWGI--DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV 220 (635)
Q Consensus 143 ~l~~qW~~E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~ 220 (635)
.|+.||.+++.++++ ++++..+.+......... .+....+|+|+|++.+....
T Consensus 307 ~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~-------------------------~~~~~~~Ivv~Tp~~l~~~l 361 (797)
T 4a2q_A 307 PVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVE-------------------------KVIEDSDIIVVTPQILVNSF 361 (797)
T ss_dssp HHHHHHHHHHHHHHGGGTCCEEEECCC-----CHH-------------------------HHHHTCSEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHH-------------------------HhhCCCCEEEEchHHHHHHH
Confidence 799999999999976 566666555332111110 11246789999999988766
Q ss_pred cchhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhc---------ccCcEEEEecccCCCChhhHHHHHHhhhh----
Q 006698 221 SGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRI---------KTRRRIILSGTPFQNNFQELENTLSLVRQ---- 287 (635)
Q Consensus 221 ~~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l---------~~~~~l~LTgTP~~n~~~el~~ll~~l~p---- 287 (635)
....+. ....+++|||||||++.+..+ ....+..+ +..++++|||||.+++..++...+..+..
T Consensus 362 ~~~~~~--~~~~~~~iViDEaH~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~ 438 (797)
T 4a2q_A 362 EDGTLT--SLSIFTLMIFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSY 438 (797)
T ss_dssp HSSSCC--CGGGCSEEEETTGGGCSTTSH-HHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHH
T ss_pred Hhcccc--ccccCCEEEEECccccCCCcc-HHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHh
Confidence 432110 234579999999999988654 22222222 22679999999998887766655443321
Q ss_pred ---hhhhh----HHHHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCC--CceEEEE
Q 006698 288 ---EFGEV----LRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLP--GLRHSVV 358 (635)
Q Consensus 288 ---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp--~~~~~~v 358 (635)
..... ...+..+.... .............. +...+...+. .........++ ..... .
T Consensus 439 L~~~~i~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~----~~~~~~~l~~-~i~~~~~~~~~l~~l~~~-~ 504 (797)
T 4a2q_A 439 LDIQAISTVRENIQELQRFMNKP--------EIDVRLVKRRIHNP----FAAIISNLMS-ETEALMRTIYSVDTLSQN-S 504 (797)
T ss_dssp HTCSEEECCCTTHHHHHHHSCCC--------CCEEEECCCCSCCH----HHHHHHHHHH-HHHHHHHHC-----------
T ss_pred cCCcEEecccccHHHHHHhcCCC--------ceEEEecCCCCCcH----HHHHHHHHHH-HHHHHHHHHHhhHHhhhh-c
Confidence 10000 00000000000 00000000000000 0000000000 00000000000 00000 0
Q ss_pred EeCCcHH-----------------------HHHHHHHHhhhhhHH----------------HHHHHHhhhc----CCCCC
Q 006698 359 ILQPDEF-----------------------QKRLCKAVEGVKSFV----------------ELNYCVSLLS----VHPSL 395 (635)
Q Consensus 359 ~~~~s~~-----------------------q~~~y~~~~~~~~~~----------------~~~~~~~~~~----~~p~l 395 (635)
...+... +..++..+......+ .....+...+ .....
T Consensus 505 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 584 (797)
T 4a2q_A 505 KKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYT 584 (797)
T ss_dssp --CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred cccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCcc
Confidence 0000000 000010000000000 0000000000 00000
Q ss_pred CCc-cccccCccchHHHhh-cccCccccchHHHHHHHHHh----cCCCeEEEEcCChhHHHHHHHHHHhhhc-------c
Q 006698 396 LPQ-QFFESFDVDSAKLAR-LKLDPEAGIKTRFLLILLEL----STNEKVLVFSQYIEPLTLIMEQLRHRFN-------W 462 (635)
Q Consensus 396 ~~~-~~~~~~~~~~~~l~~-~~~~~~~s~K~~~l~~~l~~----~~~~kviIFs~~~~~~~~l~~~L~~~~~-------~ 462 (635)
-.. ............+.. .......++|+..|.++|.. .++.|+||||+++.+++.|.+.|..... .
T Consensus 585 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~ 664 (797)
T 4a2q_A 585 ELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGV 664 (797)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceE
Confidence 000 000000000000111 11222358899999999976 3789999999999999999999987410 1
Q ss_pred cCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcc
Q 006698 463 REGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKR 542 (635)
Q Consensus 463 ~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~ 542 (635)
..|..+..++|+++.++|..++++|++ ++.++||| +|+++++|||+++|++||+||+||||..+.||+|| +| .+
T Consensus 665 l~G~~~~~~hg~~~~~eR~~~l~~F~~-~g~~~vLV-aT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR---~~ 738 (797)
T 4a2q_A 665 LMGRGRRDQTTGMTLPSQKGVLDAFKT-SKDNRLLI-ATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AA 738 (797)
T ss_dssp C-----------------------------CCSEEE-EECC-------CCCSEEEEESCCSCHHHHHTC-----------
T ss_pred EEecCCcccCCCCCHHHHHHHHHHhhc-cCCceEEE-EcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CC
Confidence 126667778899999999999999997 34566665 79999999999999999999999999999999999 55 57
Q ss_pred eEEEEEEEeCCChHHHHHHHHHHhhhhhcccccc
Q 006698 543 VVHVYHLITSETLEWDKLRRQARKVWWSNMVFPS 576 (635)
Q Consensus 543 ~V~vy~li~~~tiEe~i~~~~~~K~~~~~~~~~~ 576 (635)
++.+|.|++.++++++ +.....|..+...++..
T Consensus 739 ~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~~ 771 (797)
T 4a2q_A 739 GSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEK 771 (797)
T ss_dssp CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEeCCcHHHH-HHHHHHHHHHHHHHHHH
Confidence 8899999999999988 66777777776666543
No 10
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.1e-37 Score=357.21 Aligned_cols=447 Identities=14% Similarity=0.134 Sum_probs=222.5
Q ss_pred HhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCC---CCCcEEEeC-c
Q 006698 67 RKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP---RCRPVIIAP-R 142 (635)
Q Consensus 67 ~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~---~~~~LIv~P-~ 142 (635)
..+|+|||.+++.+++. ++++|++++||+|||++++..+...+...+ .+++||||| .
T Consensus 246 ~~~~r~~Q~~ai~~il~-------------------g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~ 306 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN-------------------GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKV 306 (936)
T ss_dssp --CCCHHHHHHHHHHHT-------------------TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSH
T ss_pred CCCCCHHHHHHHHHHHc-------------------CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCH
Confidence 56799999999999864 568999999999999999888876665554 667899999 6
Q ss_pred cchHHHHHHHHHhcC--CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhh
Q 006698 143 SMLLTWEEEFKKWGI--DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV 220 (635)
Q Consensus 143 ~l~~qW~~E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~ 220 (635)
.|+.||.+++.++++ ++++..+.+.......... +....+|+|+|++.+....
T Consensus 307 ~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~-------------------------~~~~~~IvI~Tp~~L~~~l 361 (936)
T 4a2w_A 307 PVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEK-------------------------VIEDSDIIVVTPQILVNSF 361 (936)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHH-------------------------HHHHCSEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHH-------------------------hccCCCEEEecHHHHHHHH
Confidence 699999999999976 5666665553321111111 1235789999999998766
Q ss_pred cchhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhc---------ccCcEEEEecccCCCChhhHHHHHHhhhh----
Q 006698 221 SGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRI---------KTRRRIILSGTPFQNNFQELENTLSLVRQ---- 287 (635)
Q Consensus 221 ~~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l---------~~~~~l~LTgTP~~n~~~el~~ll~~l~p---- 287 (635)
....+. ....+++||+||||++.+..+ ....+..+ +..++++|||||.+++..++...+..+..
T Consensus 362 ~~~~~~--~l~~~~liViDEaH~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~ 438 (936)
T 4a2w_A 362 EDGTLT--SLSIFTLMIFDECHNTTGNHP-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSY 438 (936)
T ss_dssp HSSSCC--CGGGCSEEEEETGGGCSTTCH-HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHH
T ss_pred HcCccc--cccCCCEEEEECccccCCCcc-HHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHh
Confidence 432210 234589999999999998754 33323222 22679999999999887777665554421
Q ss_pred ---hhhhh----HHHHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhccccccc-ccCCCceEEE--
Q 006698 288 ---EFGEV----LRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQ-ESLPGLRHSV-- 357 (635)
Q Consensus 288 ---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~-~~lp~~~~~~-- 357 (635)
..... ...+..+.... ..................+...+.. +....+..+. ..++......
T Consensus 439 L~~~~i~~~~~~~~~l~~~~~~p--------~~~~~~~~~~~~~~~~~~l~~l~~~-i~~~~~~~l~~~~l~~~~~~~~g 509 (936)
T 4a2w_A 439 LDIQAISTVRENIQELQRFMNKP--------EIDVRLVKRRIHNPFAAIISNLMSE-TEALMRTIAYVDTLSQNSKKDFG 509 (936)
T ss_dssp HTCSEEECCCSSHHHHHHHSCCC--------CEEEEECCCCSCCHHHHHHHHHHHH-HHHHHHHC------------CCS
T ss_pred cCCceeecccccHHHHHHhccCC--------cceEEecccccCcHHHHHHHHHHHH-HHHHHHHHHhhhhhhhccccccc
Confidence 10000 00000000000 0000000000001111111111100 0000000000 0000000000
Q ss_pred -----------------EEeCCcHHHHHHHHHHhhhhhHH----------------HHHHHHhhhcCCC--CCCCccc--
Q 006698 358 -----------------VILQPDEFQKRLCKAVEGVKSFV----------------ELNYCVSLLSVHP--SLLPQQF-- 400 (635)
Q Consensus 358 -----------------v~~~~s~~q~~~y~~~~~~~~~~----------------~~~~~~~~~~~~p--~l~~~~~-- 400 (635)
..++....+..++..+......+ .....+...+... .-+....
T Consensus 510 ~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~ 589 (936)
T 4a2w_A 510 TQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQH 589 (936)
T ss_dssp SHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHH
Confidence 00000001111111111000000 0000000000000 0000000
Q ss_pred -cccCccchHHHhhc-ccCccccchHHHHHHHHHhc----CCCeEEEEcCChhHHHHHHHHHHhhhcc-------cCCce
Q 006698 401 -FESFDVDSAKLARL-KLDPEAGIKTRFLLILLELS----TNEKVLVFSQYIEPLTLIMEQLRHRFNW-------REGQE 467 (635)
Q Consensus 401 -~~~~~~~~~~l~~~-~~~~~~s~K~~~l~~~l~~~----~~~kviIFs~~~~~~~~l~~~L~~~~~~-------~~g~~ 467 (635)
..........+... ......++|+..|.++|... .+.|+||||+++.+++.|.+.|....+. ..|..
T Consensus 590 l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~ 669 (936)
T 4a2w_A 590 LTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRG 669 (936)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----
T ss_pred HHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCC
Confidence 00000000011111 11223588999999999874 6899999999999999999999875111 12555
Q ss_pred EEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEE
Q 006698 468 VLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVY 547 (635)
Q Consensus 468 ~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy 547 (635)
+..++|+++..+|.+++++|++ ++.++||| +|+++++|||+++|++||+||+||||..+.||+|| + |.+++.+|
T Consensus 670 ~~~~hg~m~~~eR~~il~~Fr~-~g~~~VLV-aT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-G---R~~~g~vi 743 (936)
T 4a2w_A 670 RRDQTTGMTLPSQKGVLDAFKT-SKDNRLLI-ATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-G---RAAGSKCI 743 (936)
T ss_dssp -------------------------CCSEEE-EECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEE
T ss_pred CcccCCCCCHHHHHHHHHHhhc-cCCeeEEE-EeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-C---CCCCCEEE
Confidence 6667888999999999999997 34566665 79999999999999999999999999999999999 4 45788899
Q ss_pred EEEeCCChHHHHHHHHHHhhhhhcccccc
Q 006698 548 HLITSETLEWDKLRRQARKVWWSNMVFPS 576 (635)
Q Consensus 548 ~li~~~tiEe~i~~~~~~K~~~~~~~~~~ 576 (635)
.|++.+|+++..+ ....|..+...++..
T Consensus 744 ~Li~~~t~ee~~~-~~~~ke~~~~~~i~~ 771 (936)
T 4a2w_A 744 LVTSKTEVVENEK-CNRYKEEMMNKAVEK 771 (936)
T ss_dssp EEESCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred EEEeCCCHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999998755 666666666665543
No 11
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.9e-37 Score=340.26 Aligned_cols=408 Identities=15% Similarity=0.154 Sum_probs=230.2
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCC---CCCcEEEeCc-cc
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP---RCRPVIIAPR-SM 144 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~---~~~~LIv~P~-~l 144 (635)
+|+|||.+++.+++. ++++|++++||+|||++++..+...+...+ .+++|||||. .|
T Consensus 4 ~~~~~Q~~~i~~~~~-------------------~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L 64 (555)
T 3tbk_A 4 KPRNYQLELALPAKK-------------------GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPV 64 (555)
T ss_dssp CCCHHHHHHHHHHHT-------------------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHH
T ss_pred CCcHHHHHHHHHHhC-------------------CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHH
Confidence 599999999999864 568999999999999999988887777655 6688999995 89
Q ss_pred hHHHHHHHHHhcC--CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcc
Q 006698 145 LLTWEEEFKKWGI--DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222 (635)
Q Consensus 145 ~~qW~~E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~ 222 (635)
+.||.+++.++++ ++++..+.+......... .+....+|+|+|++.+......
T Consensus 65 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------------------------~~~~~~~i~v~T~~~l~~~~~~ 119 (555)
T 3tbk_A 65 YEQQATVFSRYFERLGYNIASISGATSDSVSVQ-------------------------HIIEDNDIIILTPQILVNNLNN 119 (555)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHH-------------------------HHHHHCSEEEECHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCcEEEEEcCCCcchhhHH-------------------------HHhcCCCEEEECHHHHHHHHhc
Confidence 9999999999875 455555544321111100 0123578999999998876644
Q ss_pred hhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhc---------ccCcEEEEecccCCCChhhHHHHHHhhh-------
Q 006698 223 DELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRI---------KTRRRIILSGTPFQNNFQELENTLSLVR------- 286 (635)
Q Consensus 223 ~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l---------~~~~~l~LTgTP~~n~~~el~~ll~~l~------- 286 (635)
.... ....+++||+||||++.+..+........+ ...++++|||||..++..++...+..+.
T Consensus 120 ~~~~--~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~ 197 (555)
T 3tbk_A 120 GAIP--SLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALD 197 (555)
T ss_dssp SSSC--CGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTT
T ss_pred Cccc--ccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcC
Confidence 2210 234589999999999988754222111222 2247999999999988766655444331
Q ss_pred hhhhhhHHHHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeC--Cc-
Q 006698 287 QEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQ--PD- 363 (635)
Q Consensus 287 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~--~s- 363 (635)
+...... ......+. + ..+......+.+. ..
T Consensus 198 ~~~~~~~------------------------------~~~~~~l~----~------------~~~~~~~~~~~~~~~~~~ 231 (555)
T 3tbk_A 198 ASVIATV------------------------------RDNVAELE----Q------------VVYKPQKISRKVASRTSN 231 (555)
T ss_dssp CSEEECC------------------------------CSCHHHHH----T------------TCCCCCEEEEECCCCSCC
T ss_pred Ceeeecc------------------------------ccCHHHHH----h------------hcCCCceEEEEecCcccC
Confidence 1100000 00000011 1 1111111111111 11
Q ss_pred HHHH-----------------------------------------------------------HHHHHHhhhhhHHHHH-
Q 006698 364 EFQK-----------------------------------------------------------RLCKAVEGVKSFVELN- 383 (635)
Q Consensus 364 ~~q~-----------------------------------------------------------~~y~~~~~~~~~~~~~- 383 (635)
+... .++..+......+...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 311 (555)
T 3tbk_A 232 TFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYN 311 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 1111 1111111100000000
Q ss_pred ---------------HHHhhhc---CCCCCCCcc--ccccCccchHHHhhc-ccCccccchHHHHHHHHHhc----CCCe
Q 006698 384 ---------------YCVSLLS---VHPSLLPQQ--FFESFDVDSAKLARL-KLDPEAGIKTRFLLILLELS----TNEK 438 (635)
Q Consensus 384 ---------------~~~~~~~---~~p~l~~~~--~~~~~~~~~~~l~~~-~~~~~~s~K~~~l~~~l~~~----~~~k 438 (635)
..+...+ .+....... ...........+... ......+.|...|.+++... ++.|
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k 391 (555)
T 3tbk_A 312 DALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETK 391 (555)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCce
Confidence 0000000 000000000 000000000000000 11123478999999888764 6799
Q ss_pred EEEEcCChhHHHHHHHHHHhhhc-------ccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccc
Q 006698 439 VLVFSQYIEPLTLIMEQLRHRFN-------WREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLV 511 (635)
Q Consensus 439 viIFs~~~~~~~~l~~~L~~~~~-------~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~ 511 (635)
+||||+++.+++.|.+.|..... ...|..+..++|+++.++|.+++++|++ ++.++||| +|+++++|||++
T Consensus 392 ~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~-~g~~~vLv-aT~~~~~GlDlp 469 (555)
T 3tbk_A 392 TILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRA-SGDNNILI-ATSVADEGIDIA 469 (555)
T ss_dssp EEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC---------------------------CCSEEE-ECCCTTCCEETT
T ss_pred EEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhc-CCCeeEEE-EcchhhcCCccc
Confidence 99999999999999999987511 1124455666779999999999999997 24567766 799999999999
Q ss_pred cCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhhhccccc
Q 006698 512 GASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFP 575 (635)
Q Consensus 512 ~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~~~~~~~ 575 (635)
+|++||+||+||||..+.||+|| |+.+.+.+|.|+++++.++. ......|..+.+..+.
T Consensus 470 ~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~~e~~~~~~~~ 528 (555)
T 3tbk_A 470 ECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEK-EKANMIKEKIMNESIL 528 (555)
T ss_dssp SCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred cCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHH-HHHhhHHHHHHHHHHH
Confidence 99999999999999999999999 55689999999999999877 4445555555554443
No 12
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.1e-35 Score=322.09 Aligned_cols=343 Identities=14% Similarity=0.200 Sum_probs=237.6
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~ 146 (635)
.+|+|||.+++.+++. +.+++|+++||+|||++++.++......+ .+++||||| ..|..
T Consensus 112 ~~l~~~Q~~ai~~~~~-------------------~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-~~~vlvl~P~~~L~~ 171 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLV-------------------NRRRILNLPTSAGRSLIQALLARYYLENY-EGKILIIVPTTALTT 171 (510)
T ss_dssp ECCCHHHHHHHHHHHH-------------------HSEEEEECCSTTTHHHHHHHHHHHHHHHC-SSEEEEEESSHHHHH
T ss_pred CCCCHHHHHHHHHHHh-------------------cCCcEEEeCCCCCHHHHHHHHHHHHHhCC-CCeEEEEECcHHHHH
Confidence 4899999999999876 34899999999999999988877666543 348899999 57899
Q ss_pred HHHHHHHHh--cCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchh
Q 006698 147 TWEEEFKKW--GIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224 (635)
Q Consensus 147 qW~~E~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~ 224 (635)
||.+++.+| .++..+..+.+....... .....+|+|+|++.+.+..
T Consensus 172 Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------------------------~~~~~~I~i~T~~~l~~~~---- 219 (510)
T 2oca_A 172 QMADDFVDYRLFSHAMIKKIGGGASKDDK----------------------------YKNDAPVVVGTWQTVVKQP---- 219 (510)
T ss_dssp HHHHHHHHTTSSCGGGEEECGGGCCTTGG----------------------------GCTTCSEEEEEHHHHTTSC----
T ss_pred HHHHHHHHhhcCCccceEEEecCCccccc----------------------------cccCCcEEEEeHHHHhhch----
Confidence 999999998 444444444332111000 0246789999999765431
Q ss_pred hhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhhh
Q 006698 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREI 303 (635)
Q Consensus 225 ~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~~ 303 (635)
......+++|||||||++.+. ...+.+..+ ++.++++||||| .+...+++++..++.|.....
T Consensus 220 --~~~~~~~~liIiDE~H~~~~~--~~~~il~~~~~~~~~l~lSATp-~~~~~~~~~~~~~~~~~~~~~----------- 283 (510)
T 2oca_A 220 --KEWFSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFGLSGSL-RDGKANIMQYVGMFGEIFKPV----------- 283 (510)
T ss_dssp --GGGGGGEEEEEEETGGGCCHH--HHHHHGGGCTTCCEEEEEESCG-GGCSSCHHHHHHHHCSEECCC-----------
T ss_pred --hhhhhcCCEEEEECCcCCCcc--cHHHHHHhcccCcEEEEEEeCC-CCCcccHHHhHHhhCCeEEee-----------
Confidence 123345799999999999863 244445666 677899999999 555566666665555432100
Q ss_pred hHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHHHHH
Q 006698 304 SKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN 383 (635)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~~~~ 383 (635)
..... .-...+++.....+.+.+++........ ... .
T Consensus 284 ------------------~~~~~------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~---~ 320 (510)
T 2oca_A 284 ------------------TTSKL------------------MEDGQVTELKINSIFLRYPDEFTTKLKG----KTY---Q 320 (510)
T ss_dssp ------------------CCC---------------------------CCEEEEEEEECCHHHHHHHTT----CCH---H
T ss_pred ------------------CHHHH------------------hhCCcCCCceEEEEeecCChHHhccccc----cch---H
Confidence 00000 0001345555555566666543311000 000 0
Q ss_pred HHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc---CCCeEEEEcCChhHHHHHHHHHHhhh
Q 006698 384 YCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQLRHRF 460 (635)
Q Consensus 384 ~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~---~~~kviIFs~~~~~~~~l~~~L~~~~ 460 (635)
....... ....|...+.+++... .+.++|||++ +..++.+.+.|...
T Consensus 321 ~~~~~~~----------------------------~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~- 370 (510)
T 2oca_A 321 EEIKIIT----------------------------GLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNE- 370 (510)
T ss_dssp HHHHHHH----------------------------TCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTT-
T ss_pred HHHHHHh----------------------------ccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHc-
Confidence 0000000 0123455555555554 5677888888 88888899999987
Q ss_pred cccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCC
Q 006698 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQ 540 (635)
Q Consensus 461 ~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ 540 (635)
+..+..++|+++.++|+++++.|++ ++..|||++.+++++|+|++.+++||+++++||+..+.|++||++|.|+
T Consensus 371 ----~~~v~~~~g~~~~~~r~~i~~~f~~--g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~ 444 (510)
T 2oca_A 371 ----YDKVYYVSGEVDTETRNIMKTLAEN--GKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHG 444 (510)
T ss_dssp ----CSSEEEESSSTTHHHHHHHHHHHHH--CCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTC
T ss_pred ----CCCeEEEECCCCHHHHHHHHHHHhC--CCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCC
Confidence 6799999999999999999999997 5577777533999999999999999999999999999999999999999
Q ss_pred cc-eEEEEEEEeCCChHH
Q 006698 541 KR-VVHVYHLITSETLEW 557 (635)
Q Consensus 541 ~~-~V~vy~li~~~tiEe 557 (635)
.+ .|.||.++...++.+
T Consensus 445 ~~~~v~i~~~~~~~~~~~ 462 (510)
T 2oca_A 445 SKTIATVWDLIDDAGVKP 462 (510)
T ss_dssp CCCCCEEEEEEEECCBCC
T ss_pred CCceEEEEEeecchhhhh
Confidence 87 899999998766443
No 13
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=333.89 Aligned_cols=445 Identities=13% Similarity=0.128 Sum_probs=237.2
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCC----CCcEEEeC-c
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPR----CRPVIIAP-R 142 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~----~~~LIv~P-~ 142 (635)
.+|+|||.+++.++++ ++++|++++||+|||++++..+..++..++. +++||||| .
T Consensus 6 ~~l~~~Q~~~i~~il~-------------------g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~ 66 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE-------------------GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKV 66 (699)
T ss_dssp -CCCHHHHHHHHHHHS-------------------SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCS
T ss_pred CCccHHHHHHHHHHHh-------------------CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCH
Confidence 4699999999999865 5689999999999999999888776654433 78999999 5
Q ss_pred cchHHH-HHHHHHhcCC-CcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhh
Q 006698 143 SMLLTW-EEEFKKWGID-IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV 220 (635)
Q Consensus 143 ~l~~qW-~~E~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~ 220 (635)
+|+.|| .+++.++++. +++..+++......... .+....+|+|+|++.+....
T Consensus 67 ~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~-------------------------~~~~~~~Ilv~Tp~~L~~~l 121 (699)
T 4gl2_A 67 LLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFP-------------------------EVVKSCDIIISTAQILENSL 121 (699)
T ss_dssp HHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHH-------------------------HHHHSCSEEEEEHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHH-------------------------hhhcCCCEEEECHHHHHHHH
Confidence 699999 9999999876 66666665432221111 11246799999999998765
Q ss_pred cch---hhhhhhccCCCEEEEeCCCcCCCccc--HHH-HHHHh-c-------------ccCcEEEEecccCCCChhh---
Q 006698 221 SGD---ELSGILLDLPGLFVFDEGHTPRNDDT--CMF-KALSR-I-------------KTRRRIILSGTPFQNNFQE--- 277 (635)
Q Consensus 221 ~~~---~~~~~~~~~~~~vIvDEaH~~kn~~s--~~~-~~l~~-l-------------~~~~~l~LTgTP~~n~~~e--- 277 (635)
... ....+....|++|||||||++.+... ... ..+.. + +..++++|||||..++..+
T Consensus 122 ~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~ 201 (699)
T 4gl2_A 122 LNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAK 201 (699)
T ss_dssp C--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHH
T ss_pred hccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHH
Confidence 321 12223445689999999999855321 111 11111 1 4467999999999875443
Q ss_pred ----HHHHHHhhhh-hhhhh---HHHHHhhhhhhhHhhhhhhhhhhhhccCcCcH---HHHHHHHHhhcchhhhcccccc
Q 006698 278 ----LENTLSLVRQ-EFGEV---LRTVRKSGREISKAKHASLISSIGRCANHRDD---EKLKELKEKIAPFVNVHKGTVL 346 (635)
Q Consensus 278 ----l~~ll~~l~p-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~~rr~~~~~ 346 (635)
+..++..+++ .+... ...+..+..... ............ ..+..+...+..++......
T Consensus 202 ~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~--------~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~-- 271 (699)
T 4gl2_A 202 AEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPC--------KKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMS-- 271 (699)
T ss_dssp HHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCE--------EEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCS--
T ss_pred HHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCc--------eEEEEcccccCChHHHHHHHHHHHHHHHhccCcch--
Confidence 3333334433 11000 000000000000 000000000000 11111111111111000000
Q ss_pred cccCCCceEE--EE------------EeCCcHHHHHHHHHHhhhh---hHHHHHHHHhhhcC-----CCCCCCc--cccc
Q 006698 347 QESLPGLRHS--VV------------ILQPDEFQKRLCKAVEGVK---SFVELNYCVSLLSV-----HPSLLPQ--QFFE 402 (635)
Q Consensus 347 ~~~lp~~~~~--~v------------~~~~s~~q~~~y~~~~~~~---~~~~~~~~~~~~~~-----~p~l~~~--~~~~ 402 (635)
.+...... +. .......+...|....... ........+..... .-..... ....
T Consensus 272 --~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 349 (699)
T 4gl2_A 272 --DFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPL 349 (699)
T ss_dssp --CSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred --hccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence 00000000 00 0000000000010000000 00000000000000 0000000 0000
Q ss_pred cCccch-----------HHHhhcccCcc-ccchHHHHHHHHHhc----C-CCeEEEEcCChhHHHHHHHHHHhhhccc-C
Q 006698 403 SFDVDS-----------AKLARLKLDPE-AGIKTRFLLILLELS----T-NEKVLVFSQYIEPLTLIMEQLRHRFNWR-E 464 (635)
Q Consensus 403 ~~~~~~-----------~~l~~~~~~~~-~s~K~~~l~~~l~~~----~-~~kviIFs~~~~~~~~l~~~L~~~~~~~-~ 464 (635)
....+. ..+........ .+.|+..|.+++... + +.++||||+++.+++.|.+.|....... .
T Consensus 350 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~ 429 (699)
T 4gl2_A 350 KLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEV 429 (699)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC--
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCcccccc
Confidence 000000 01111111222 456666666666553 4 8999999999999999999998752111 1
Q ss_pred CceEEEEeCC--------CCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhh
Q 006698 465 GQEVLYMDGK--------QDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAY 536 (635)
Q Consensus 465 g~~~~~i~G~--------~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~ 536 (635)
|+.+..++|+ ++..+|.++++.|++ ++++||| +|+++++|||+++++.||+||+||||..+.||+||++
T Consensus 430 g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~--g~~~VLV-aT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRAr 506 (699)
T 4gl2_A 430 GVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRT--GKINLLI-ATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRAR 506 (699)
T ss_dssp ---CEECCCSCCCTTCCCCCHHHHHHHHHHHCC-----CCSE-EECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSC
T ss_pred CcceEEEECCCCccCCCCCCHHHHHHHHHHHhc--CCCcEEE-EccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCC
Confidence 7899999999 999999999999998 5577766 7999999999999999999999999999999999986
Q ss_pred hcCCcceEEEEEEEeCCChHHHHHHHHHHhhhhhccccc
Q 006698 537 RLGQKRVVHVYHLITSETLEWDKLRRQARKVWWSNMVFP 575 (635)
Q Consensus 537 R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~~~~~~~ 575 (635)
|.| ..++.+...++.+.........+..+....+.
T Consensus 507 r~g----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (699)
T 4gl2_A 507 ADE----STYVLVAHSGSGVIERETVNDFREKMMYKAIH 541 (699)
T ss_dssp SSS----CEEEEEEESSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCC----ceEEEEEeCCchHHHHHHHHHHHHHHHHHHHH
Confidence 655 34445566677665555444455555555444
No 14
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.1e-34 Score=326.37 Aligned_cols=392 Identities=15% Similarity=0.135 Sum_probs=207.4
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCC---CCcEEEeC-cc
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPR---CRPVIIAP-RS 143 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~---~~~LIv~P-~~ 143 (635)
.+|+|||.+++.+++. ++++|++++||+|||++++..+...+...+. +++|||+| .+
T Consensus 12 ~~lr~~Q~~~i~~~l~-------------------g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~ 72 (696)
T 2ykg_A 12 FKPRNYQLELALPAMK-------------------GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIP 72 (696)
T ss_dssp -CCCHHHHHHHHHHHT-------------------TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHH
T ss_pred CCccHHHHHHHHHHHc-------------------CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHH
Confidence 4699999999999864 5689999999999999999888776665543 67899999 59
Q ss_pred chHHHHHHHHHhcC--CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhc
Q 006698 144 MLLTWEEEFKKWGI--DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221 (635)
Q Consensus 144 l~~qW~~E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~ 221 (635)
|+.||.+++.++++ ++++..+.+.......... .....+|+++|++.+.+...
T Consensus 73 L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~-------------------------~~~~~~Iiv~Tp~~L~~~l~ 127 (696)
T 2ykg_A 73 VYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQ-------------------------IVENNDIIILTPQILVNNLK 127 (696)
T ss_dssp HHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHH-------------------------HHHTCSEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCceEEEEeCCccccccHHH-------------------------hccCCCEEEECHHHHHHHHh
Confidence 99999999999976 4555555543221111110 11357899999999987664
Q ss_pred chhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhc---------ccCcEEEEecccCCCChhhHHHHHHhh-------
Q 006698 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRI---------KTRRRIILSGTPFQNNFQELENTLSLV------- 285 (635)
Q Consensus 222 ~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l---------~~~~~l~LTgTP~~n~~~el~~ll~~l------- 285 (635)
...+. ....+++|||||||++.+..+........+ +..++++|||||..++..++...+..+
T Consensus 128 ~~~~~--~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l 205 (696)
T 2ykg_A 128 KGTIP--SLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASL 205 (696)
T ss_dssp TTSSC--CGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHT
T ss_pred cCccc--ccccccEEEEeCCCcccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhc
Confidence 42210 234589999999999987654222221111 457899999999876654443333222
Q ss_pred hhhhhhhHHHHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeC--Cc
Q 006698 286 RQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQ--PD 363 (635)
Q Consensus 286 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~--~s 363 (635)
+....... ......+...+. -| ......+. .+
T Consensus 206 ~~~~~~~~------------------------------~~~~~~l~~~~~--------------~p--~~~~~~~~~~~~ 239 (696)
T 2ykg_A 206 DASVIATV------------------------------KHNLEELEQVVY--------------KP--QKFFRKVESRIS 239 (696)
T ss_dssp TCCEEECC------------------------------CTTHHHHHHHSC--------------CC--EEEEEECCCCSC
T ss_pred CCceEeec------------------------------ccchHHHHhhcC--------------CC--ceeEEecCcccC
Confidence 21111000 000011111100 00 00000000 00
Q ss_pred HHHHHHHH----HHhhhh---------------------hHHHHHHHHhhhcCCCCCCC---------------------
Q 006698 364 EFQKRLCK----AVEGVK---------------------SFVELNYCVSLLSVHPSLLP--------------------- 397 (635)
Q Consensus 364 ~~q~~~y~----~~~~~~---------------------~~~~~~~~~~~~~~~p~l~~--------------------- 397 (635)
......+. .+.... ............+....+..
T Consensus 240 ~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 319 (696)
T 2ykg_A 240 DKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 319 (696)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHH
Confidence 00000000 000000 00000000000000000000
Q ss_pred -------ccc-----------------ccc-Cccc----------hHHHhhcccC-ccccchHHHHHHHHHhc----CCC
Q 006698 398 -------QQF-----------------FES-FDVD----------SAKLARLKLD-PEAGIKTRFLLILLELS----TNE 437 (635)
Q Consensus 398 -------~~~-----------------~~~-~~~~----------~~~l~~~~~~-~~~s~K~~~l~~~l~~~----~~~ 437 (635)
... ... .... ...+...... ...+.|+..|.+++... ++.
T Consensus 320 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 399 (696)
T 2ykg_A 320 NDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 399 (696)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTC
T ss_pred hHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCC
Confidence 000 000 0000 0000001111 12567999999988875 678
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEe--------CCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccc
Q 006698 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMD--------GKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGIN 509 (635)
Q Consensus 438 kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~--------G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~Gln 509 (635)
++||||+++.+++.|.+.|..... ..++.+..++ |+++.++|+++++.|++ +|..+||| +|+++++|||
T Consensus 400 ~~IIF~~~~~~~~~l~~~L~~~~~-~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~-~g~~~vLV-aT~v~~~GiD 476 (696)
T 2ykg_A 400 ITILFVKTRALVDALKNWIEGNPK-LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA-SGDHNILI-ATSVADEGID 476 (696)
T ss_dssp CEEEECSCHHHHHHHHHHHHHCTT-CCSCCEEC------------------------------CCSCSE-EEESSCCC--
T ss_pred cEEEEeCcHHHHHHHHHHHHhCCC-ccccceeEEEccCCCccccCCCHHHHHHHHHHHHh-cCCccEEE-EechhhcCCc
Confidence 999999999999999999998610 0117888885 49999999999999986 24566665 7999999999
Q ss_pred cccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHH
Q 006698 510 LVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWD 558 (635)
Q Consensus 510 L~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~ 558 (635)
+++++.||+||+|||+..+.||+|| +|. ++..+|.|++.+++++.
T Consensus 477 ip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 477 IAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp -CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHHH
T ss_pred CccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHHHH
Confidence 9999999999999999999999999 884 56788999998887653
No 15
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.9e-35 Score=325.40 Aligned_cols=365 Identities=15% Similarity=0.122 Sum_probs=212.6
Q ss_pred HhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC-------CCCCcEEE
Q 006698 67 RKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH-------PRCRPVII 139 (635)
Q Consensus 67 ~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~-------~~~~~LIv 139 (635)
...|+|||.+++.++++.+..| .++++++++||+|||++++.++..+++.+ ..+++|||
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~--------------~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil 241 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQG--------------KKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFL 241 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTT--------------CSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEE
T ss_pred CCCchHHHHHHHHHHHHHHhcC--------------CCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEE
Confidence 3579999999999998876542 46789999999999999999998887776 67788999
Q ss_pred eC-ccchHHHH-HHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHH
Q 006698 140 AP-RSMLLTWE-EEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFE 217 (635)
Q Consensus 140 ~P-~~l~~qW~-~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~ 217 (635)
|| ..|+.||. +++..|.+.... +.+ . ......+|+|+||+.+.
T Consensus 242 ~P~~~L~~Q~~~~~~~~~~~~~~~--~~~-----~----------------------------~~~~~~~I~v~T~~~l~ 286 (590)
T 3h1t_A 242 ADRNVLVDDPKDKTFTPFGDARHK--IEG-----G----------------------------KVVKSREIYFAIYQSIA 286 (590)
T ss_dssp EC-----------CCTTTCSSEEE--CCC-----------------------------------CCSSCSEEEEEGGGC-
T ss_pred eCCHHHHHHHHHHHHHhcchhhhh--hhc-----c----------------------------CCCCCCcEEEEEhhhhc
Confidence 99 88999999 788877543211 110 0 01246789999999887
Q ss_pred Hhhcc-hhhhhhhccCCCEEEEeCCCcCCCcc-cHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHH
Q 006698 218 KLVSG-DELSGILLDLPGLFVFDEGHTPRNDD-TCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRT 295 (635)
Q Consensus 218 ~~~~~-~~~~~~~~~~~~~vIvDEaH~~kn~~-s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~ 295 (635)
..... .....+....|++||+||||++.+.. +.....+..++..++++|||||..+...+++.++. +....
T Consensus 287 ~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~---~~~~~---- 359 (590)
T 3h1t_A 287 SDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYFEPAFQIGMTATPLREDNRDTYRYFG---NPIYT---- 359 (590)
T ss_dssp -----CCGGGGSCTTSCSEEEESCCC---------CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSC---SCSEE----
T ss_pred cccccccccccCCCCccCEEEEECCccccccchHHHHHHHHhCCcceEEEeccccccccchhHHHHcC---CceEe----
Confidence 65432 11233444568999999999998753 33344555567788999999999887666554431 10000
Q ss_pred HHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhh
Q 006698 296 VRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEG 375 (635)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~ 375 (635)
+ .. ...+.. ..+++.....+.................
T Consensus 360 ---~-----------------------~~--~~~i~~---------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (590)
T 3h1t_A 360 ---Y-----------------------SL--RQGIDD---------------GFLAPYRVHRVISEVDAAGWRPSKGDVD 396 (590)
T ss_dssp ---E-----------------------CH--HHHHHH---------------TSSCCEEEEEEEETTCC-----------
T ss_pred ---c-----------------------CH--HHHhhC---------------CccCCcEEEEeeeeeecccccccccccc
Confidence 0 00 000000 0112222222222211100000000000
Q ss_pred hhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc-CCCeEEEEcCChhHHHHHHH
Q 006698 376 VKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS-TNEKVLVFSQYIEPLTLIME 454 (635)
Q Consensus 376 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~-~~~kviIFs~~~~~~~~l~~ 454 (635)
.. .............. ...+.. ..........+.+.+... ++.|+||||+++..++.+.+
T Consensus 397 ~~---------------~~~~~~~~~~~~~~-~~~~~~---~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~ 457 (590)
T 3h1t_A 397 RF---------------GREIPDGEYQTKDF-ERVIAL---KARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRR 457 (590)
T ss_dssp ---------------------------CCSH-HHHHHH---HHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHH
T ss_pred cc---------------ccccccccCCHHHh-hhHhcC---hHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHH
Confidence 00 00000000000000 000000 000011112233334433 67899999999999999999
Q ss_pred HHHhhhcc---cCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhh
Q 006698 455 QLRHRFNW---REGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQA 531 (635)
Q Consensus 455 ~L~~~~~~---~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa 531 (635)
.|...+.. ..+..+..++|.++ ++|++++++|++++.+..++|++|+++++|+|++.+++||+++++||+..+.|+
T Consensus 458 ~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~ 536 (590)
T 3h1t_A 458 ALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQI 536 (590)
T ss_dssp HHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHH
T ss_pred HHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHH
Confidence 99876220 11233788999975 469999999998666677888899999999999999999999999999999999
Q ss_pred hhhhhhcCC---cceEEEEEEE
Q 006698 532 ISRAYRLGQ---KRVVHVYHLI 550 (635)
Q Consensus 532 ~gR~~R~GQ---~~~V~vy~li 550 (635)
+||++|.|+ +..+.||.++
T Consensus 537 iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 537 VGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp HTTSCCCBGGGTBSCEEEEECS
T ss_pred HhhhcccCccCCCCEEEEEecC
Confidence 999999996 4488888887
No 16
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=5.2e-34 Score=298.61 Aligned_cols=332 Identities=14% Similarity=0.141 Sum_probs=224.8
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC-CCCCcEEEeC-ccchH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH-PRCRPVIIAP-RSMLL 146 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~-~~~~~LIv~P-~~l~~ 146 (635)
.|+|||.+++.++++ +++++++++||+|||++++..+...+... ...++||||| ..|+.
T Consensus 30 ~~~~~Q~~~i~~~~~-------------------~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~ 90 (391)
T 1xti_A 30 HPSEVQHECIPQAIL-------------------GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAF 90 (391)
T ss_dssp SCCHHHHHHHHHHTT-------------------TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHH
T ss_pred CCCHHHHHHHHHHhc-------------------CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHH
Confidence 499999999998854 56899999999999998877766554332 2447899999 58999
Q ss_pred HHHHHHHHhcC---CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcch
Q 006698 147 TWEEEFKKWGI---DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD 223 (635)
Q Consensus 147 qW~~E~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~ 223 (635)
||.+++.++.. ++++..+.+.... ......+. ....+|+++|++.+.......
T Consensus 91 q~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~--------------------~~~~~iiv~T~~~l~~~~~~~ 146 (391)
T 1xti_A 91 QISKEYERFSKYMPNVKVAVFFGGLSI----KKDEEVLK--------------------KNCPHIVVGTPGRILALARNK 146 (391)
T ss_dssp HHHHHHHHHTTTCTTCCEEEECTTSCH----HHHHHHHH--------------------HSCCSEEEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCCCeEEEEEeCCCCH----HHHHHHHh--------------------cCCCCEEEECHHHHHHHHHcC
Confidence 99999999853 4444444432111 11100000 124689999999988765432
Q ss_pred hhhhhhccCCCEEEEeCCCcCCCcccH--HH-HHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhh
Q 006698 224 ELSGILLDLPGLFVFDEGHTPRNDDTC--MF-KALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS 299 (635)
Q Consensus 224 ~~~~~~~~~~~~vIvDEaH~~kn~~s~--~~-~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~ 299 (635)
.+....+++||+||||++.+.... .. ..+... ...+++++||||-.. ..++ +.. +
T Consensus 147 ---~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~-~~~~---~~~--------------~ 205 (391)
T 1xti_A 147 ---SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKE-IRPV---CRK--------------F 205 (391)
T ss_dssp ---SSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCST-HHHH---HHH--------------H
T ss_pred ---CccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHH-HHHH---HHH--------------H
Confidence 223456899999999998764221 11 222222 356789999998432 1110 000 0
Q ss_pred hhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhH
Q 006698 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSF 379 (635)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~ 379 (635)
. -.+....... ......+......+.
T Consensus 206 ~---------------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~-------------------- 231 (391)
T 1xti_A 206 M---------------------------------QDPMEIFVDD-ETKLTLHGLQQYYVK-------------------- 231 (391)
T ss_dssp C---------------------------------SSCEEEECCC-CCCCCCTTCEEEEEE--------------------
T ss_pred c---------------------------------CCCeEEEecC-ccccCcccceEEEEE--------------------
Confidence 0 0000000000 000001111111111
Q ss_pred HHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhh
Q 006698 380 VELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR 459 (635)
Q Consensus 380 ~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~ 459 (635)
.....|...+.+++....+.|+|||+++...++.+.+.|...
T Consensus 232 --------------------------------------~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~ 273 (391)
T 1xti_A 232 --------------------------------------LKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ 273 (391)
T ss_dssp --------------------------------------CCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHT
T ss_pred --------------------------------------cCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhC
Confidence 112346667778887778899999999999999999999987
Q ss_pred hcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcC
Q 006698 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLG 539 (635)
Q Consensus 460 ~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~G 539 (635)
|+.+..++|+++.++|..+++.|++ ++.+|++ +|+++++|+|++++++||++|+|||+..+.||+||++|.|
T Consensus 274 -----~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv-~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g 345 (391)
T 1xti_A 274 -----NFPAIAIHRGMPQEERLSRYQQFKD--FQRRILV-ATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFG 345 (391)
T ss_dssp -----TCCEEEECTTSCHHHHHHHHHHHHT--TCCSEEE-ESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSC
T ss_pred -----CCcEEEEeCCCCHHHHHHHHHHHhc--CCCcEEE-ECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCC
Confidence 9999999999999999999999997 4566666 7999999999999999999999999999999999999999
Q ss_pred CcceEEEEEEEeCCChHHHHHHHHHHhh
Q 006698 540 QKRVVHVYHLITSETLEWDKLRRQARKV 567 (635)
Q Consensus 540 Q~~~V~vy~li~~~tiEe~i~~~~~~K~ 567 (635)
+...+. .|+... -+..+++...++.
T Consensus 346 ~~g~~~--~~~~~~-~~~~~~~~~~~~~ 370 (391)
T 1xti_A 346 TKGLAI--TFVSDE-NDAKILNDVQDRF 370 (391)
T ss_dssp CCCEEE--EEECSH-HHHHHHHHHHHHT
T ss_pred CceEEE--EEEccc-chHHHHHHHHHHh
Confidence 765554 344433 3556666666553
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.6e-33 Score=287.56 Aligned_cols=321 Identities=18% Similarity=0.200 Sum_probs=221.8
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLT 147 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~q 147 (635)
.|+|||.+++..+++. .+++++.++||+|||++++..+.......+..++||||| ..|..|
T Consensus 28 ~~~~~Q~~~i~~~~~~------------------~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q 89 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLND------------------EYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQ 89 (367)
T ss_dssp SCCHHHHHHHHHHHHT------------------CSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHH
T ss_pred CCCHHHHHHHHHHhCC------------------CCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHH
Confidence 6999999999998752 368999999999999998887777665556678899999 678899
Q ss_pred HHHHHHHhcCCC--cccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhh
Q 006698 148 WEEEFKKWGIDI--PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225 (635)
Q Consensus 148 W~~E~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~ 225 (635)
|.+++.++.... .+....+.. ..... ... ....+|+++|++.+.......
T Consensus 90 ~~~~~~~~~~~~~~~v~~~~~~~----~~~~~---~~~-------------------~~~~~iiv~T~~~l~~~~~~~-- 141 (367)
T 1hv8_A 90 VADEIESLKGNKNLKIAKIYGGK----AIYPQ---IKA-------------------LKNANIVVGTPGRILDHINRG-- 141 (367)
T ss_dssp HHHHHHHHHCSSCCCEEEECTTS----CHHHH---HHH-------------------HHTCSEEEECHHHHHHHHHTT--
T ss_pred HHHHHHHHhCCCCceEEEEECCc----chHHH---Hhh-------------------cCCCCEEEecHHHHHHHHHcC--
Confidence 999999986532 333222211 11000 000 125789999999987765331
Q ss_pred hhhhccCCCEEEEeCCCcCCCcc--cHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhh
Q 006698 226 SGILLDLPGLFVFDEGHTPRNDD--TCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302 (635)
Q Consensus 226 ~~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~ 302 (635)
.+....+++||+||||.+.+.. ......+..+ +..+++++||||.. ++...+
T Consensus 142 -~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~-------------------- 196 (367)
T 1hv8_A 142 -TLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPR----EILNLA-------------------- 196 (367)
T ss_dssp -CSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCH----HHHHHH--------------------
T ss_pred -CcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCH----HHHHHH--------------------
Confidence 1234568999999999987654 2223333333 56678999999932 111100
Q ss_pred hhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCC-CceEEEEEeCCcHHHHHHHHHHhhhhhHHH
Q 006698 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLP-GLRHSVVILQPDEFQKRLCKAVEGVKSFVE 381 (635)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp-~~~~~~v~~~~s~~q~~~y~~~~~~~~~~~ 381 (635)
...+..+.. +....+ ......+.+
T Consensus 197 ----------------------------~~~~~~~~~------~~~~~~~~~~~~~~~~--------------------- 221 (367)
T 1hv8_A 197 ----------------------------KKYMGDYSF------IKAKINANIEQSYVEV--------------------- 221 (367)
T ss_dssp ----------------------------HHHCCSEEE------EECCSSSSSEEEEEEC---------------------
T ss_pred ----------------------------HHHcCCCeE------EEecCCCCceEEEEEe---------------------
Confidence 000000000 000000 001111111
Q ss_pred HHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhc
Q 006698 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFN 461 (635)
Q Consensus 382 ~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~ 461 (635)
....|...+.+++. ..+.++||||++...++.+.+.|...
T Consensus 222 -------------------------------------~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~-- 261 (367)
T 1hv8_A 222 -------------------------------------NENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDI-- 261 (367)
T ss_dssp -------------------------------------CGGGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHT--
T ss_pred -------------------------------------ChHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhc--
Confidence 11235556666665 36779999999999999999999987
Q ss_pred ccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCc
Q 006698 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQK 541 (635)
Q Consensus 462 ~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~ 541 (635)
|+.+..++|+++.++|..+++.|++ ++.+|++ +|+++++|+|++++++||++++|||+..+.||+||++|.|+.
T Consensus 262 ---~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv-~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~ 335 (367)
T 1hv8_A 262 ---GFKAGAIHGDLSQSQREKVIRLFKQ--KKIRILI-ATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKK 335 (367)
T ss_dssp ---TCCEEEECSSSCHHHHHHHHHHHHT--TSSSEEE-ECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSC
T ss_pred ---CCCeEEeeCCCCHHHHHHHHHHHHc--CCCeEEE-ECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCc
Confidence 9999999999999999999999997 5567766 799999999999999999999999999999999999999987
Q ss_pred ceEEEEEEEeCCChHHHHHHHHHH
Q 006698 542 RVVHVYHLITSETLEWDKLRRQAR 565 (635)
Q Consensus 542 ~~V~vy~li~~~tiEe~i~~~~~~ 565 (635)
..+. .++.+... ..++.+.+
T Consensus 336 g~~~--~~~~~~~~--~~~~~i~~ 355 (367)
T 1hv8_A 336 GKAI--SIINRREY--KKLRYIER 355 (367)
T ss_dssp CEEE--EEECTTSH--HHHHHHHH
T ss_pred cEEE--EEEcHHHH--HHHHHHHH
Confidence 6554 45565543 34444444
No 18
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=8.6e-33 Score=290.25 Aligned_cols=327 Identities=17% Similarity=0.198 Sum_probs=222.8
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC-CCCCcEEEeC-ccchH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH-PRCRPVIIAP-RSMLL 146 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~-~~~~~LIv~P-~~l~~ 146 (635)
.|+|||.+++.+++. ++++++..+||+|||++++..+...+... ...++||||| ..|..
T Consensus 43 ~~~~~Q~~~i~~i~~-------------------~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 103 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT-------------------GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELAL 103 (400)
T ss_dssp SCCHHHHHHHHHHHH-------------------TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHHhc-------------------CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHH
Confidence 599999999999875 46899999999999998877765554333 3447899999 68889
Q ss_pred HHHHHHHHhcCCC--cccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchh
Q 006698 147 TWEEEFKKWGIDI--PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224 (635)
Q Consensus 147 qW~~E~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~ 224 (635)
||.+++.++.... .+....+ ....... .. ......+|+++|++.+.......
T Consensus 104 q~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~--~~------------------~~~~~~~Ivv~T~~~l~~~~~~~- 157 (400)
T 1s2m_A 104 QTSQVVRTLGKHCGISCMVTTG-----GTNLRDD--IL------------------RLNETVHILVGTPGRVLDLASRK- 157 (400)
T ss_dssp HHHHHHHHHTTTTTCCEEEECS-----SSCHHHH--HH------------------HTTSCCSEEEECHHHHHHHHHTT-
T ss_pred HHHHHHHHHhcccCceEEEEeC-----CcchHHH--HH------------------HhcCCCCEEEEchHHHHHHHHhC-
Confidence 9999999987643 2222222 1110000 00 01246789999999987655331
Q ss_pred hhhhhccCCCEEEEeCCCcCCCcc-cHHHHHHH-hc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhh
Q 006698 225 LSGILLDLPGLFVFDEGHTPRNDD-TCMFKALS-RI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301 (635)
Q Consensus 225 ~~~~~~~~~~~vIvDEaH~~kn~~-s~~~~~l~-~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~ 301 (635)
......+++||+||||++.+.. ......+. .+ +..++++||||+-. ++...+
T Consensus 158 --~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~----~~~~~~------------------- 212 (400)
T 1s2m_A 158 --VADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPL----TVKEFM------------------- 212 (400)
T ss_dssp --CSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCH----HHHHHH-------------------
T ss_pred --CcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCH----HHHHHH-------------------
Confidence 1223457999999999886642 11122222 22 45678999999721 110000
Q ss_pred hhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhh-cchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHH
Q 006698 302 EISKAKHASLISSIGRCANHRDDEKLKELKEKI-APFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFV 380 (635)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~ 380 (635)
...+ .++...... . ...+........+
T Consensus 213 -----------------------------~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~-------------------- 240 (400)
T 1s2m_A 213 -----------------------------VKHLHKPYEINLME-E--LTLKGITQYYAFV-------------------- 240 (400)
T ss_dssp -----------------------------HHHCSSCEEESCCS-S--CBCTTEEEEEEEC--------------------
T ss_pred -----------------------------HHHcCCCeEEEecc-c--cccCCceeEEEEe--------------------
Confidence 0000 000000000 0 0011111111111
Q ss_pred HHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhh
Q 006698 381 ELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460 (635)
Q Consensus 381 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~ 460 (635)
....|...+..++....+.++||||++...++.+.+.|...
T Consensus 241 --------------------------------------~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~- 281 (400)
T 1s2m_A 241 --------------------------------------EERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDL- 281 (400)
T ss_dssp --------------------------------------CGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHH-
T ss_pred --------------------------------------chhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhc-
Confidence 12346677777777778889999999999999999999987
Q ss_pred cccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCC
Q 006698 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQ 540 (635)
Q Consensus 461 ~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ 540 (635)
|+.+..++|+++.++|..+++.|++ ++.+|++ +|+++++|+|+++++.||++|+|||+..+.||+||++|.|+
T Consensus 282 ----~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vLv-~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~ 354 (400)
T 1s2m_A 282 ----GYSCYYSHARMKQQERNKVFHEFRQ--GKVRTLV-CSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGH 354 (400)
T ss_dssp ----TCCEEEECTTSCHHHHHHHHHHHHT--TSSSEEE-ESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTC
T ss_pred ----CCCeEEecCCCCHHHHHHHHHHHhc--CCCcEEE-EcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCC
Confidence 9999999999999999999999997 5567766 79999999999999999999999999999999999999997
Q ss_pred cceEEEEEEEeCCChHHHHHHHHHHhh
Q 006698 541 KRVVHVYHLITSETLEWDKLRRQARKV 567 (635)
Q Consensus 541 ~~~V~vy~li~~~tiEe~i~~~~~~K~ 567 (635)
.. .++.|+..+ |...+..++++.
T Consensus 355 ~g--~~~~l~~~~--~~~~~~~i~~~~ 377 (400)
T 1s2m_A 355 LG--LAINLINWN--DRFNLYKIEQEL 377 (400)
T ss_dssp CE--EEEEEECGG--GHHHHHHHHHHH
T ss_pred Cc--eEEEEeccc--hHHHHHHHHHHh
Confidence 54 455666665 444555555543
No 19
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=8.3e-33 Score=291.30 Aligned_cols=328 Identities=18% Similarity=0.233 Sum_probs=222.7
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh-CCCCCcEEEeC-ccchH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~-~~~~~~LIv~P-~~l~~ 146 (635)
.|+|||.+++.++++ +++++++++||+|||++++..+...+.. ....++||||| ..|..
T Consensus 59 ~~~~~Q~~ai~~i~~-------------------~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~ 119 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIK-------------------GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAV 119 (410)
T ss_dssp SCCHHHHHHHHHHHT-------------------TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHHhC-------------------CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHH
Confidence 499999999999864 5689999999999998888766554432 34567899999 67889
Q ss_pred HHHHHHHHhcCCCccc--ccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchh
Q 006698 147 TWEEEFKKWGIDIPFY--NLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224 (635)
Q Consensus 147 qW~~E~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~ 224 (635)
||.+++.++.....+. ...+ +....... .. .....+|+++|++.+.......
T Consensus 120 q~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~---~~------------------~~~~~~ivv~Tp~~l~~~l~~~- 173 (410)
T 2j0s_A 120 QIQKGLLALGDYMNVQCHACIG----GTNVGEDI---RK------------------LDYGQHVVAGTPGRVFDMIRRR- 173 (410)
T ss_dssp HHHHHHHHHTTTTTCCEEEECT----TSCHHHHH---HH------------------HHHCCSEEEECHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccCCeEEEEEEC----CCCHHHHH---HH------------------hhcCCCEEEcCHHHHHHHHHhC-
Confidence 9999999987543322 2221 11111110 00 1235689999999887665432
Q ss_pred hhhhhccCCCEEEEeCCCcCCCcc--cHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhh
Q 006698 225 LSGILLDLPGLFVFDEGHTPRNDD--TCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301 (635)
Q Consensus 225 ~~~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~ 301 (635)
.+....+++||+||||++.+.. ......+..+ +..+++++||||-. ++..++. .+.
T Consensus 174 --~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~----~~~~~~~--------------~~~- 232 (410)
T 2j0s_A 174 --SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPH----EILEMTN--------------KFM- 232 (410)
T ss_dssp --SSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCH----HHHTTGG--------------GTC-
T ss_pred --CccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCH----HHHHHHH--------------HHc-
Confidence 2333568999999999987654 2233333334 45678999999821 1111000 000
Q ss_pred hhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHHH
Q 006698 302 EISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVE 381 (635)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~~ 381 (635)
..+......... ...+......+.+.
T Consensus 233 --------------------------------~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------------- 258 (410)
T 2j0s_A 233 --------------------------------TDPIRILVKRDE--LTLEGIKQFFVAVE-------------------- 258 (410)
T ss_dssp --------------------------------SSCEEECCCGGG--CSCTTEEEEEEEES--------------------
T ss_pred --------------------------------CCCEEEEecCcc--ccCCCceEEEEEeC--------------------
Confidence 000000000000 01111122222111
Q ss_pred HHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhc
Q 006698 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFN 461 (635)
Q Consensus 382 ~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~ 461 (635)
....|...+.+++......++||||++...++.+.+.|...
T Consensus 259 -------------------------------------~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~-- 299 (410)
T 2j0s_A 259 -------------------------------------REEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA-- 299 (410)
T ss_dssp -------------------------------------STTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHT--
T ss_pred -------------------------------------cHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhC--
Confidence 11235666777777667779999999999999999999987
Q ss_pred ccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCc
Q 006698 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQK 541 (635)
Q Consensus 462 ~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~ 541 (635)
|+.+..++|+++..+|..+++.|++ +..+||+ +|+++++|+|++++++||++|+||++..+.||+||++|.|+.
T Consensus 300 ---~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlv-~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~ 373 (410)
T 2j0s_A 300 ---NFTVSSMHGDMPQKERESIMKEFRS--GASRVLI-STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRK 373 (410)
T ss_dssp ---TCCCEEECTTSCHHHHHHHHHHHHH--TSSCEEE-ECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCC
T ss_pred ---CCceEEeeCCCCHHHHHHHHHHHHC--CCCCEEE-ECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCc
Confidence 9999999999999999999999997 5567666 799999999999999999999999999999999999999975
Q ss_pred ceEEEEEEEeCCChHHHHHHHHHH
Q 006698 542 RVVHVYHLITSETLEWDKLRRQAR 565 (635)
Q Consensus 542 ~~V~vy~li~~~tiEe~i~~~~~~ 565 (635)
- .++.|+..+. ...+..+++
T Consensus 374 g--~~~~~~~~~~--~~~~~~i~~ 393 (410)
T 2j0s_A 374 G--VAINFVKNDD--IRILRDIEQ 393 (410)
T ss_dssp E--EEEEEEEGGG--HHHHHHHHH
T ss_pred e--EEEEEecHHH--HHHHHHHHH
Confidence 4 4555666543 344444443
No 20
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=6.9e-33 Score=283.91 Aligned_cols=313 Identities=14% Similarity=0.195 Sum_probs=206.5
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLT 147 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~q 147 (635)
.|+|||.+++.++.+ ++++++.++||+|||++++..+... ..++||||| ..|+.|
T Consensus 16 ~l~~~Q~~~i~~i~~-------------------~~~~lv~~~TGsGKT~~~~~~~~~~-----~~~~liv~P~~~L~~q 71 (337)
T 2z0m_A 16 NFTEVQSKTIPLMLQ-------------------GKNVVVRAKTGSGKTAAYAIPILEL-----GMKSLVVTPTRELTRQ 71 (337)
T ss_dssp SCCHHHHHHHHHHHT-------------------TCCEEEECCTTSSHHHHHHHHHHHH-----TCCEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHHHhc-------------------CCCEEEEcCCCCcHHHHHHHHHHhh-----cCCEEEEeCCHHHHHH
Confidence 599999999998864 5689999999999998887766442 457899999 688899
Q ss_pred HHHHHHHhcCC--CcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhh
Q 006698 148 WEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225 (635)
Q Consensus 148 W~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~ 225 (635)
|.+++.++... .++..+.+.. ...... .. ....+|+++|++.+.......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~-------------------~~~~~i~v~T~~~l~~~~~~~-- 123 (337)
T 2z0m_A 72 VASHIRDIGRYMDTKVAEVYGGM----PYKAQI---NR-------------------VRNADIVVATPGRLLDLWSKG-- 123 (337)
T ss_dssp HHHHHHHHTTTSCCCEEEECTTS----CHHHHH---HH-------------------HTTCSEEEECHHHHHHHHHTT--
T ss_pred HHHHHHHHhhhcCCcEEEEECCc----chHHHH---hh-------------------cCCCCEEEECHHHHHHHHHcC--
Confidence 99999998653 3333332211 110000 00 124789999999988765331
Q ss_pred hhhhccCCCEEEEeCCCcCCCcc--cHHHHHHHhcc-cCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhh
Q 006698 226 SGILLDLPGLFVFDEGHTPRNDD--TCMFKALSRIK-TRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302 (635)
Q Consensus 226 ~~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~l~-~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~ 302 (635)
.+....+++||+||||++.+.. ......+..++ ....+++||||-. ++...+. .+
T Consensus 124 -~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~----~~~~~~~--------------~~--- 181 (337)
T 2z0m_A 124 -VIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPE----EIRKVVK--------------DF--- 181 (337)
T ss_dssp -SCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCH----HHHHHHH--------------HH---
T ss_pred -CcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEEEEeCcCCH----HHHHHHH--------------Hh---
Confidence 1223458999999999986543 22233333443 4456688999821 1111100 00
Q ss_pred hhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHHHH
Q 006698 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVEL 382 (635)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~~~ 382 (635)
+..+..... . ...+......+.+...
T Consensus 182 -------------------------------~~~~~~~~~--~--~~~~~~~~~~~~~~~~------------------- 207 (337)
T 2z0m_A 182 -------------------------------ITNYEEIEA--C--IGLANVEHKFVHVKDD------------------- 207 (337)
T ss_dssp -------------------------------SCSCEEEEC--S--GGGGGEEEEEEECSSS-------------------
T ss_pred -------------------------------cCCceeeec--c--cccCCceEEEEEeChH-------------------
Confidence 000000000 0 0011111111111100
Q ss_pred HHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcc
Q 006698 383 NYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNW 462 (635)
Q Consensus 383 ~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~ 462 (635)
.....+.+....+.++|||+++...++.+.+.|.
T Consensus 208 -----------------------------------------~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~----- 241 (337)
T 2z0m_A 208 -----------------------------------------WRSKVQALRENKDKGVIVFVRTRNRVAKLVRLFD----- 241 (337)
T ss_dssp -----------------------------------------SHHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT-----
T ss_pred -----------------------------------------HHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh-----
Confidence 0111233344478899999999999988877765
Q ss_pred cCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcc
Q 006698 463 REGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKR 542 (635)
Q Consensus 463 ~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~ 542 (635)
.+..++|+++..+|.++++.|++ ++.+|++ +|+++++|+|+++++.||++++|||+..+.|++||++|.|+..
T Consensus 242 ----~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv-~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g 314 (337)
T 2z0m_A 242 ----NAIELRGDLPQSVRNRNIDAFRE--GEYDMLI-TTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKG 314 (337)
T ss_dssp ----TEEEECTTSCHHHHHHHHHHHHT--TSCSEEE-ECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCE
T ss_pred ----hhhhhcCCCCHHHHHHHHHHHHc--CCCcEEE-EcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCc
Confidence 35789999999999999999997 5566666 6999999999999999999999999999999999999999988
Q ss_pred eEEEEEEEeCCChHHHHHHHH
Q 006698 543 VVHVYHLITSETLEWDKLRRQ 563 (635)
Q Consensus 543 ~V~vy~li~~~tiEe~i~~~~ 563 (635)
.+.+|.. .+..+.+.+.+.+
T Consensus 315 ~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 315 EAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp EEEEEES-SCHHHHHHHC---
T ss_pred eEEEEEe-CcHHHHHHHHHHh
Confidence 8877766 4444555554443
No 21
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=6.7e-32 Score=282.91 Aligned_cols=328 Identities=16% Similarity=0.189 Sum_probs=218.8
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh-CCCCCcEEEeC-ccchH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~-~~~~~~LIv~P-~~l~~ 146 (635)
.|+|||.+++..++.. .++++++..+||+|||++++..+...+.. ....++||||| ..|..
T Consensus 27 ~~~~~Q~~~i~~~~~~-----------------~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 89 (395)
T 3pey_A 27 KPSKIQERALPLLLHN-----------------PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELAR 89 (395)
T ss_dssp SCCHHHHHHHHHHHCS-----------------SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHHHcC-----------------CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHH
Confidence 6999999999988642 13689999999999999888766554432 34557899999 66889
Q ss_pred HHHHHHHHhcCCCc--ccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchh
Q 006698 147 TWEEEFKKWGIDIP--FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224 (635)
Q Consensus 147 qW~~E~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~ 224 (635)
||.+++.++..... +....+...... .....+|+++|++.+.......
T Consensus 90 q~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~iiv~T~~~l~~~~~~~- 139 (395)
T 3pey_A 90 QTLEVVQEMGKFTKITSQLIVPDSFEKN-----------------------------KQINAQVIVGTPGTVLDLMRRK- 139 (395)
T ss_dssp HHHHHHHHHTTTSCCCEEEESTTSSCTT-----------------------------SCBCCSEEEECHHHHHHHHHTT-
T ss_pred HHHHHHHHHhcccCeeEEEEecCchhhh-----------------------------ccCCCCEEEEcHHHHHHHHHcC-
Confidence 99999999864322 222211110000 0135789999999987665331
Q ss_pred hhhhhccCCCEEEEeCCCcCCCccc--HHHHHHHh-c-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhh
Q 006698 225 LSGILLDLPGLFVFDEGHTPRNDDT--CMFKALSR-I-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300 (635)
Q Consensus 225 ~~~~~~~~~~~vIvDEaH~~kn~~s--~~~~~l~~-l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~ 300 (635)
.+....+++||+||||++.+... .....+.. + +..+++++||||- ..+..+...+.+.
T Consensus 140 --~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~----~~~~~~~~~~~~~------------ 201 (395)
T 3pey_A 140 --LMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFA----DAVRQYAKKIVPN------------ 201 (395)
T ss_dssp --CBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCC----HHHHHHHHHHSCS------------
T ss_pred --CcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCC----HHHHHHHHHhCCC------------
Confidence 12344689999999998864221 22222222 3 4567899999982 1111111000000
Q ss_pred hhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHH
Q 006698 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFV 380 (635)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~ 380 (635)
+......... ...+........+.
T Consensus 202 -----------------------------------~~~~~~~~~~--~~~~~~~~~~~~~~------------------- 225 (395)
T 3pey_A 202 -----------------------------------ANTLELQTNE--VNVDAIKQLYMDCK------------------- 225 (395)
T ss_dssp -----------------------------------CEEECCCGGG--CSCTTEEEEEEECS-------------------
T ss_pred -----------------------------------CeEEEccccc--cccccccEEEEEcC-------------------
Confidence 0000000000 01111111111111
Q ss_pred HHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhh
Q 006698 381 ELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460 (635)
Q Consensus 381 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~ 460 (635)
....|...+..++....+.++|||++....++.+.+.|...
T Consensus 226 --------------------------------------~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~- 266 (395)
T 3pey_A 226 --------------------------------------NEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSE- 266 (395)
T ss_dssp --------------------------------------SHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT-
T ss_pred --------------------------------------chHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc-
Confidence 11235556666666667889999999999999999999987
Q ss_pred cccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCC------ChhhHHhhhhh
Q 006698 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVW------NPFVERQAISR 534 (635)
Q Consensus 461 ~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~w------np~~~~Qa~gR 534 (635)
|+.+..++|+++.++|..+++.|++ ++.+|++ +|+++++|+|++++++||++|+|| |+..+.||+||
T Consensus 267 ----~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv-~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR 339 (395)
T 3pey_A 267 ----GHEVSILHGDLQTQERDRLIDDFRE--GRSKVLI-TTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGR 339 (395)
T ss_dssp ----TCCCEEECTTSCHHHHHHHHHHHHT--TSCCEEE-ECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTT
T ss_pred ----CCcEEEeCCCCCHHHHHHHHHHHHC--CCCCEEE-ECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccc
Confidence 9999999999999999999999997 5567666 799999999999999999999999 99999999999
Q ss_pred hhhcCCcceEEEEEEEeCCChHHHHHHHHHHh
Q 006698 535 AYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566 (635)
Q Consensus 535 ~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K 566 (635)
++|.|+...+. .++..+ -+..+++.+.+.
T Consensus 340 ~gR~g~~g~~~--~~~~~~-~~~~~~~~i~~~ 368 (395)
T 3pey_A 340 TGRFGRKGVAI--SFVHDK-NSFNILSAIQKY 368 (395)
T ss_dssp SSCTTCCEEEE--EEECSH-HHHHHHHHHHHH
T ss_pred cccCCCCceEE--EEEech-HHHHHHHHHHHH
Confidence 99999765444 444432 234445544443
No 22
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=3.1e-32 Score=287.42 Aligned_cols=327 Identities=19% Similarity=0.199 Sum_probs=210.3
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC-CCCCcEEEeC-ccchH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH-PRCRPVIIAP-RSMLL 146 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~-~~~~~LIv~P-~~l~~ 146 (635)
.|+|||.+++..+++ ++++++..+||+|||++++..+...+... ...++||||| ..|..
T Consensus 62 ~~~~~Q~~~i~~~~~-------------------~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 122 (414)
T 3eiq_A 62 KPSAIQQRAILPCIK-------------------GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQ 122 (414)
T ss_dssp SCCHHHHHHHHHHHT-------------------TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHH
T ss_pred CCCHHHHHHhHHHhC-------------------CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHH
Confidence 699999999988864 56799999999999999777665554333 4557899999 67889
Q ss_pred HHHHHHHHhcCCC--cccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchh
Q 006698 147 TWEEEFKKWGIDI--PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224 (635)
Q Consensus 147 qW~~E~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~ 224 (635)
||.+++.++.... .+....+ +....... ... .....+|+++|++.+.......
T Consensus 123 q~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~---~~~-----------------~~~~~~iiv~T~~~l~~~l~~~- 177 (414)
T 3eiq_A 123 QIQKVVMALGDYMGASCHACIG----GTNVRAEV---QKL-----------------QMEAPHIIVGTPGRVFDMLNRR- 177 (414)
T ss_dssp HHHHHHHHHGGGSCCCEEECCC----CTTHHHHH---HHH-----------------TTTCCSEEEECHHHHHHHHHHT-
T ss_pred HHHHHHHHHhcccCceEEEEEC----CcchHHHH---HHH-----------------hcCCCCEEEECHHHHHHHHHcC-
Confidence 9999999986432 2222221 11111110 110 0145689999999887665331
Q ss_pred hhhhhccCCCEEEEeCCCcCCCcc--cHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhh
Q 006698 225 LSGILLDLPGLFVFDEGHTPRNDD--TCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGR 301 (635)
Q Consensus 225 ~~~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~ 301 (635)
.+....+++||+||||++.+.. ......+..+ +..++++|||||- .++..+... +.
T Consensus 178 --~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~----~~~~~~~~~--------------~~- 236 (414)
T 3eiq_A 178 --YLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMP----SDVLEVTKK--------------FM- 236 (414)
T ss_dssp --SSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCC----HHHHHHHTT--------------TC-
T ss_pred --CcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecC----HHHHHHHHH--------------Hc-
Confidence 1233457999999999975432 3444455555 5667899999982 111111000 00
Q ss_pred hhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHHH
Q 006698 302 EISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVE 381 (635)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~~ 381 (635)
-.+......... ...+......+.+
T Consensus 237 --------------------------------~~~~~~~~~~~~--~~~~~~~~~~~~~--------------------- 261 (414)
T 3eiq_A 237 --------------------------------RDPIRILVKKEE--LTLEGIRQFYINV--------------------- 261 (414)
T ss_dssp --------------------------------SSCEEECCCCCC--CCTTSCCEEEEEC---------------------
T ss_pred --------------------------------CCCEEEEecCCc--cCCCCceEEEEEe---------------------
Confidence 000000000000 0011111111110
Q ss_pred HHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhc
Q 006698 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFN 461 (635)
Q Consensus 382 ~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~ 461 (635)
.....|...+.+++....+.++|||++....++.+.+.|...
T Consensus 262 ------------------------------------~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~-- 303 (414)
T 3eiq_A 262 ------------------------------------EREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR-- 303 (414)
T ss_dssp ------------------------------------SSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTT--
T ss_pred ------------------------------------ChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhc--
Confidence 112347778888888888889999999999999999999987
Q ss_pred ccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCc
Q 006698 462 WREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQK 541 (635)
Q Consensus 462 ~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~ 541 (635)
|+.+..++|+++.++|..+++.|++ +..+||+ +|+++++|+|+++++.||++|++||+..+.||+||++|.|+.
T Consensus 304 ---~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlv-~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~ 377 (414)
T 3eiq_A 304 ---DFTVSAMHGDMDQKERDVIMREFRS--GSSRVLI-TTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRK 377 (414)
T ss_dssp ---TCCCEEC---CHHHHHHHHHHHHSC--C---CEE-ECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC------
T ss_pred ---CCeEEEecCCCCHHHHHHHHHHHHc--CCCcEEE-ECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCC
Confidence 9999999999999999999999997 5566666 799999999999999999999999999999999999999975
Q ss_pred ceEEEEEEEeCCChHHHHHHHH
Q 006698 542 RVVHVYHLITSETLEWDKLRRQ 563 (635)
Q Consensus 542 ~~V~vy~li~~~tiEe~i~~~~ 563 (635)
. .+|.|++++ |...++.+
T Consensus 378 g--~~~~~~~~~--~~~~~~~~ 395 (414)
T 3eiq_A 378 G--VAINMVTEE--DKRTLRDI 395 (414)
T ss_dssp ---CEEEEECST--HHHHHHHH
T ss_pred c--eEEEEEcHH--HHHHHHHH
Confidence 4 456677765 34444443
No 23
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.3e-31 Score=279.87 Aligned_cols=315 Identities=15% Similarity=0.202 Sum_probs=214.2
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCC------CCCcEEEeC-
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP------RCRPVIIAP- 141 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~------~~~~LIv~P- 141 (635)
.++|+|.+++..++. ++.+++..+||+|||+.++..+...+...+ ..++|||||
T Consensus 78 ~pt~iQ~~ai~~i~~-------------------g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~Pt 138 (434)
T 2db3_A 78 IPTPIQKCSIPVISS-------------------GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPT 138 (434)
T ss_dssp SCCHHHHHHHHHHHT-------------------TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSS
T ss_pred CCCHHHHHHHHHHhc-------------------CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecC
Confidence 599999999998854 578999999999999987765554443322 346799999
Q ss_pred ccchHHHHHHHHHhcCC--CcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHh
Q 006698 142 RSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219 (635)
Q Consensus 142 ~~l~~qW~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~ 219 (635)
..|..||.+++.++... +++..+.+.. ...... . ....+.+|+|+|++.+...
T Consensus 139 reLa~Q~~~~~~~~~~~~~~~~~~~~gg~----~~~~~~---~------------------~l~~~~~Ivv~Tp~~l~~~ 193 (434)
T 2db3_A 139 RELAIQIFNEARKFAFESYLKIGIVYGGT----SFRHQN---E------------------CITRGCHVVIATPGRLLDF 193 (434)
T ss_dssp HHHHHHHHHHHHHHTTTSSCCCCEECTTS----CHHHHH---H------------------HHTTCCSEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcEEEEEECCC----CHHHHH---H------------------HhhcCCCEEEEChHHHHHH
Confidence 67899999999998643 3333332211 111000 0 0124678999999998776
Q ss_pred hcchhhhhhhccCCCEEEEeCCCcCCCcc--cHHHHHHHhc---ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHH
Q 006698 220 VSGDELSGILLDLPGLFVFDEGHTPRNDD--TCMFKALSRI---KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLR 294 (635)
Q Consensus 220 ~~~~~~~~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~l---~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~ 294 (635)
.... .+....+++||+||||++...+ ....+.+..+ .....+++|||+- .++..+..
T Consensus 194 l~~~---~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~----~~~~~~~~----------- 255 (434)
T 2db3_A 194 VDRT---FITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFP----EEIQRMAG----------- 255 (434)
T ss_dssp HHTT---SCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCC----HHHHHHHH-----------
T ss_pred HHhC---CcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCC----HHHHHHHH-----------
Confidence 5432 1234567999999999986643 2333334333 4567899999972 12111110
Q ss_pred HHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHh
Q 006698 295 TVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVE 374 (635)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~ 374 (635)
..+........ .......+........+
T Consensus 256 -------------------------------------~~l~~~~~i~~-~~~~~~~~~i~~~~~~~-------------- 283 (434)
T 2db3_A 256 -------------------------------------EFLKNYVFVAI-GIVGGACSDVKQTIYEV-------------- 283 (434)
T ss_dssp -------------------------------------TTCSSCEEEEE-SSTTCCCTTEEEEEEEC--------------
T ss_pred -------------------------------------HhccCCEEEEe-ccccccccccceEEEEe--------------
Confidence 00000000000 00000011111111111
Q ss_pred hhhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHH
Q 006698 375 GVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIME 454 (635)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~ 454 (635)
....|...|.+++....+ ++||||+....++.+.+
T Consensus 284 --------------------------------------------~~~~k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~ 318 (434)
T 2db3_A 284 --------------------------------------------NKYAKRSKLIEILSEQAD-GTIVFVETKRGADFLAS 318 (434)
T ss_dssp --------------------------------------------CGGGHHHHHHHHHHHCCT-TEEEECSSHHHHHHHHH
T ss_pred --------------------------------------------CcHHHHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHH
Confidence 112366667777776544 49999999999999999
Q ss_pred HHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhh
Q 006698 455 QLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISR 534 (635)
Q Consensus 455 ~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR 534 (635)
.|... |+.+..++|+++..+|..+++.|++ ++.+||+ +|+++++|||++++++||+||+|+++..+.||+||
T Consensus 319 ~L~~~-----~~~~~~lhg~~~~~~R~~~l~~F~~--g~~~vLv-aT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR 390 (434)
T 2db3_A 319 FLSEK-----EFPTTSIHGDRLQSQREQALRDFKN--GSMKVLI-ATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGR 390 (434)
T ss_dssp HHHHT-----TCCEEEESTTSCHHHHHHHHHHHHT--SSCSEEE-ECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTT
T ss_pred HHHhC-----CCCEEEEeCCCCHHHHHHHHHHHHc--CCCcEEE-EchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcc
Confidence 99987 9999999999999999999999997 5567766 79999999999999999999999999999999999
Q ss_pred hhhcCCcceEEEEEEEeC
Q 006698 535 AYRLGQKRVVHVYHLITS 552 (635)
Q Consensus 535 ~~R~GQ~~~V~vy~li~~ 552 (635)
++|.|+.-. ++.|+..
T Consensus 391 ~gR~g~~G~--a~~~~~~ 406 (434)
T 2db3_A 391 TGRVGNNGR--ATSFFDP 406 (434)
T ss_dssp SSCTTCCEE--EEEEECT
T ss_pred cccCCCCCE--EEEEEec
Confidence 999997544 4455663
No 24
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.98 E-value=1.4e-30 Score=274.60 Aligned_cols=332 Identities=16% Similarity=0.193 Sum_probs=219.9
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh-CCCCCcEEEeC-ccchH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~-~~~~~~LIv~P-~~l~~ 146 (635)
.|+|||.+++..++.. .++++++..+||+|||++++..+...+.. ....++||||| ..|..
T Consensus 47 ~~~~~Q~~~i~~~~~~-----------------~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 109 (412)
T 3fht_A 47 RPSKIQENALPLMLAE-----------------PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELAL 109 (412)
T ss_dssp SCCHHHHHHHHHHHSS-----------------SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHHhcC-----------------CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHH
Confidence 6999999999988642 14689999999999999887666554433 33347899999 67889
Q ss_pred HHHHHHHHhcC---CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcch
Q 006698 147 TWEEEFKKWGI---DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD 223 (635)
Q Consensus 147 qW~~E~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~ 223 (635)
||.+.+.++.. +..+....+...... ......+|+|+|++.+......
T Consensus 110 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~ivv~T~~~l~~~~~~- 160 (412)
T 3fht_A 110 QTGKVIEQMGKFYPELKLAYAVRGNKLER----------------------------GQKISEQIVIGTPGTVLDWCSK- 160 (412)
T ss_dssp HHHHHHHHHTTTSTTCCEEEECTTCCCCT----------------------------TCCCCCSEEEECHHHHHHHHTT-
T ss_pred HHHHHHHHHHhhcccceEEEeecCcchhh----------------------------hhcCCCCEEEECchHHHHHHHh-
Confidence 99999988753 233222222110000 0013568999999998776532
Q ss_pred hhhhhhccCCCEEEEeCCCcCCCc--ccHHHHHHH-hc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhh
Q 006698 224 ELSGILLDLPGLFVFDEGHTPRND--DTCMFKALS-RI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKS 299 (635)
Q Consensus 224 ~~~~~~~~~~~~vIvDEaH~~kn~--~s~~~~~l~-~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~ 299 (635)
...+....+++||+||||++... .......+. .+ +..+.+++||||-. +++.+.....+
T Consensus 161 -~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~------------ 223 (412)
T 3fht_A 161 -LKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED----SVWKFAQKVVP------------ 223 (412)
T ss_dssp -SCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCH----HHHHHHHHHSS------------
T ss_pred -cCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCH----HHHHHHHHhcC------------
Confidence 11222346899999999987432 222222333 33 45578999999831 11111110000
Q ss_pred hhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhH
Q 006698 300 GREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSF 379 (635)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~ 379 (635)
.+........ ....+......+.+..
T Consensus 224 -----------------------------------~~~~~~~~~~--~~~~~~~~~~~~~~~~----------------- 249 (412)
T 3fht_A 224 -----------------------------------DPNVIKLKRE--EETLDTIKQYYVLCSS----------------- 249 (412)
T ss_dssp -----------------------------------SCEEECCCGG--GSSCTTEEEEEEECSS-----------------
T ss_pred -----------------------------------CCeEEeeccc--cccccCceEEEEEcCC-----------------
Confidence 0000000000 0011111222221111
Q ss_pred HHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhh
Q 006698 380 VELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR 459 (635)
Q Consensus 380 ~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~ 459 (635)
...|...+.+++....+.++||||+....++.+.+.|...
T Consensus 250 ----------------------------------------~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~ 289 (412)
T 3fht_A 250 ----------------------------------------RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE 289 (412)
T ss_dssp ----------------------------------------HHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHT
T ss_pred ----------------------------------------hHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhC
Confidence 1235566667776667889999999999999999999987
Q ss_pred hcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCCh------hhHHhhhh
Q 006698 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP------FVERQAIS 533 (635)
Q Consensus 460 ~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp------~~~~Qa~g 533 (635)
|+.+..++|+++.++|..+++.|++ ++.+|++ +|+++++|+|++++++||++|+||++ ..+.||+|
T Consensus 290 -----~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv-~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~G 361 (412)
T 3fht_A 290 -----GHQVALLSGEMMVEQRAAVIERFRE--GKEKVLV-TTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIG 361 (412)
T ss_dssp -----TCCCEEECTTSCHHHHHHHHHHHHT--TSCSEEE-ECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHT
T ss_pred -----CCeEEEecCCCCHHHHHHHHHHHHC--CCCcEEE-EcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccC
Confidence 9999999999999999999999997 5567666 79999999999999999999999876 69999999
Q ss_pred hhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhhh
Q 006698 534 RAYRLGQKRVVHVYHLITSETLEWDKLRRQARKVW 568 (635)
Q Consensus 534 R~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~ 568 (635)
|++|.|+... ++.++.. .-|...++..+++..
T Consensus 362 R~gR~g~~g~--~~~~~~~-~~~~~~~~~i~~~~~ 393 (412)
T 3fht_A 362 RTGRFGKRGL--AVNMVDS-KHSMNILNRIQEHFN 393 (412)
T ss_dssp TSSCTTCCEE--EEEEECS-HHHHHHHHHHHHHHT
T ss_pred cccCCCCCce--EEEEEcC-hhhHHHHHHHHHHHC
Confidence 9999996544 4445433 334666666666543
No 25
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.97 E-value=1e-32 Score=289.10 Aligned_cols=317 Identities=17% Similarity=0.196 Sum_probs=107.1
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh-CCCCCcEEEeC-ccch
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAP-RSML 145 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~-~~~~~~LIv~P-~~l~ 145 (635)
..|+|||.+++.+++. ++++++.++||+|||++++..+...+.. ....++||||| ..|.
T Consensus 42 ~~~~~~Q~~~i~~i~~-------------------~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~ 102 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIE-------------------GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELA 102 (394)
T ss_dssp CSCCHHHHHHHHHHHH-------------------TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHH
T ss_pred CCCCHHHHHHHHHHhC-------------------CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHH
Confidence 3799999999999876 4689999999999998876655444333 34457899999 6888
Q ss_pred HHHHHHHHHhcCC--CcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcch
Q 006698 146 LTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD 223 (635)
Q Consensus 146 ~qW~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~ 223 (635)
.||.+++.++... +++..+.+.. ...... .. ....+|+++|++.+.......
T Consensus 103 ~q~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~---~~-------------------~~~~~i~v~T~~~l~~~~~~~ 156 (394)
T 1fuu_A 103 LQIQKVVMALAFHMDIKVHACIGGT----SFVEDA---EG-------------------LRDAQIVVGTPGRVFDNIQRR 156 (394)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECSSC----CHHHHH---HH-------------------HHHCSEEEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCeeEEEEeCCC----chHHHH---hh-------------------cCCCCEEEECHHHHHHHHHhC
Confidence 9999999998654 3333333211 100000 00 124689999999987655331
Q ss_pred hhhhhhccCCCEEEEeCCCcCCCc--ccHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhh
Q 006698 224 ELSGILLDLPGLFVFDEGHTPRND--DTCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300 (635)
Q Consensus 224 ~~~~~~~~~~~~vIvDEaH~~kn~--~s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~ 300 (635)
.+....+++||+||||++.+. .......+..+ +..++++|||||-. ++..+..
T Consensus 157 ---~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~----------------- 212 (394)
T 1fuu_A 157 ---RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPN----DVLEVTT----------------- 212 (394)
T ss_dssp ---SSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCH----HHHHHHH-----------------
T ss_pred ---CcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCH----HHHHHHH-----------------
Confidence 233456899999999997433 23333444444 45679999999831 1111000
Q ss_pred hhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhc-chhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhH
Q 006698 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIA-PFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSF 379 (635)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~ 379 (635)
..+. +.......... ..+.... .|..
T Consensus 213 -------------------------------~~~~~~~~~~~~~~~~--~~~~~~~-------------~~~~------- 239 (394)
T 1fuu_A 213 -------------------------------KFMRNPVRILVKKDEL--TLEGIKQ-------------FYVN------- 239 (394)
T ss_dssp -------------------------------HHCCSCEEEEECC------------------------------------
T ss_pred -------------------------------HhcCCCeEEEecCccc--cCCCceE-------------EEEE-------
Confidence 0000 00000000000 0000000 0000
Q ss_pred HHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhh
Q 006698 380 VELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHR 459 (635)
Q Consensus 380 ~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~ 459 (635)
......|...+.+++....+.++||||++...++.+.+.|...
T Consensus 240 -------------------------------------~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~ 282 (394)
T 1fuu_A 240 -------------------------------------VEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND 282 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------cCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHc
Confidence 0001124445555565556789999999999999999999986
Q ss_pred hcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcC
Q 006698 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLG 539 (635)
Q Consensus 460 ~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~G 539 (635)
|+.+..++|+++.++|..+++.|++ +..+|++ +|+++++|+|++++++||++|+||++..+.||+||++|.|
T Consensus 283 -----~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv-~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g 354 (394)
T 1fuu_A 283 -----KFTVSAIYSDLPQQERDTIMKEFRS--GSSRILI-STDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFG 354 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----CCeEEEeeCCCCHHHHHHHHHHHHC--CCCcEEE-ECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCC
Confidence 8999999999999999999999987 5566666 7999999999999999999999999999999999999999
Q ss_pred CcceEEEEEEEeCC
Q 006698 540 QKRVVHVYHLITSE 553 (635)
Q Consensus 540 Q~~~V~vy~li~~~ 553 (635)
+... ++.|+..+
T Consensus 355 ~~g~--~~~~~~~~ 366 (394)
T 1fuu_A 355 RKGV--AINFVTNE 366 (394)
T ss_dssp --------------
T ss_pred CCce--EEEEEchh
Confidence 7654 44455554
No 26
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.97 E-value=6.4e-31 Score=277.56 Aligned_cols=319 Identities=17% Similarity=0.243 Sum_probs=212.3
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHH-HHHhCC--------------
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQA-YMKLHP-------------- 132 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~-~~~~~~-------------- 132 (635)
..|+|+|.+++..+.. ++.+++..+||+|||+.++..+.. +.....
T Consensus 36 ~~~~~~Q~~~i~~i~~-------------------~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 96 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKE-------------------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYG 96 (417)
T ss_dssp CSCCHHHHHHHHHHHT-------------------TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTB
T ss_pred CCCCHHHHHHHHHHcc-------------------CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccc
Confidence 3799999999987753 568999999999999877655443 333221
Q ss_pred ----CCCcEEEeC-ccchHHHHHHHHHhcCC--CcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccC
Q 006698 133 ----RCRPVIIAP-RSMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMG 205 (635)
Q Consensus 133 ----~~~~LIv~P-~~l~~qW~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (635)
..++||||| ..|..||.+++.++... +++..+.+.. ..... .. .....
T Consensus 97 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~----~~~~~---~~------------------~~~~~ 151 (417)
T 2i4i_A 97 RRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGA----DIGQQ---IR------------------DLERG 151 (417)
T ss_dssp SCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSS----CHHHH---HH------------------HHTTC
T ss_pred cccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCC----CHHHH---HH------------------HhhCC
Confidence 145799999 68899999999998643 3333333211 11110 01 11245
Q ss_pred CCeEEeeHHHHHHhhcchhhhhhhccCCCEEEEeCCCcCCCcc--cHHHHHHHh--cc---cCcEEEEecccCCCChhhH
Q 006698 206 TGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDD--TCMFKALSR--IK---TRRRIILSGTPFQNNFQEL 278 (635)
Q Consensus 206 ~~vvi~ty~~~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~--l~---~~~~l~LTgTP~~n~~~el 278 (635)
.+|+|+|++.+....... .+....+++||+||||++...+ ......+.. +. ..+.+++||||- .++
T Consensus 152 ~~I~v~Tp~~l~~~l~~~---~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~----~~~ 224 (417)
T 2i4i_A 152 CHLLVATPGRLVDMMERG---KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFP----KEI 224 (417)
T ss_dssp CSEEEECHHHHHHHHHTT---SBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCC----HHH
T ss_pred CCEEEEChHHHHHHHHcC---CcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCC----HHH
Confidence 789999999988765432 2334557999999999875432 222222222 11 356899999982 111
Q ss_pred HHHHHhhhhhhhhhHHHHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEE
Q 006698 279 ENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358 (635)
Q Consensus 279 ~~ll~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v 358 (635)
..++. ..+.......... .....+......+
T Consensus 225 ~~~~~------------------------------------------------~~~~~~~~~~~~~-~~~~~~~i~~~~~ 255 (417)
T 2i4i_A 225 QMLAR------------------------------------------------DFLDEYIFLAVGR-VGSTSENITQKVV 255 (417)
T ss_dssp HHHHH------------------------------------------------HHCSSCEEEEEC-----CCSSEEEEEE
T ss_pred HHHHH------------------------------------------------HHcCCCEEEEeCC-CCCCccCceEEEE
Confidence 11110 0000000000000 0000111111111
Q ss_pred EeCCcHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc-CCC
Q 006698 359 ILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS-TNE 437 (635)
Q Consensus 359 ~~~~s~~q~~~y~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~-~~~ 437 (635)
.+. ...|...+.+++... .+.
T Consensus 256 ~~~----------------------------------------------------------~~~~~~~l~~~l~~~~~~~ 277 (417)
T 2i4i_A 256 WVE----------------------------------------------------------ESDKRSFLLDLLNATGKDS 277 (417)
T ss_dssp ECC----------------------------------------------------------GGGHHHHHHHHHHTCCTTC
T ss_pred Eec----------------------------------------------------------cHhHHHHHHHHHHhcCCCC
Confidence 111 133666777777776 688
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEE
Q 006698 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517 (635)
Q Consensus 438 kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi 517 (635)
++|||++....++.+.+.|... |+.+..++|+++.++|..+++.|++ ++.+|++ +|+++++|+|++++++||
T Consensus 278 ~~lVf~~~~~~~~~l~~~L~~~-----~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlv-aT~~~~~Gidip~v~~Vi 349 (417)
T 2i4i_A 278 LTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRS--GKSPILV-ATAVAARGLDISNVKHVI 349 (417)
T ss_dssp EEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHH--TSSCEEE-ECHHHHTTSCCCCEEEEE
T ss_pred eEEEEECCHHHHHHHHHHHHHC-----CCCeeEecCCCCHHHHHHHHHHHHc--CCCCEEE-ECChhhcCCCcccCCEEE
Confidence 9999999999999999999987 9999999999999999999999997 5567666 799999999999999999
Q ss_pred EeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCC
Q 006698 518 LLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554 (635)
Q Consensus 518 ~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~t 554 (635)
++|+||++..+.||+||++|.|+. -.++.|+.+..
T Consensus 350 ~~~~p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~~ 384 (417)
T 2i4i_A 350 NFDLPSDIEEYVHRIGRTGRVGNL--GLATSFFNERN 384 (417)
T ss_dssp ESSCCSSHHHHHHHHTTBCC--CC--EEEEEEECGGG
T ss_pred EEcCCCCHHHHHHhcCccccCCCC--ceEEEEEcccc
Confidence 999999999999999999999975 45555666543
No 27
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.97 E-value=5.5e-30 Score=275.65 Aligned_cols=306 Identities=17% Similarity=0.153 Sum_probs=211.4
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLT 147 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~q 147 (635)
.++|+|.+++..++. ++.+++..+||+|||+.++..+. .. .+.+|||+| .+|+.|
T Consensus 25 ~~r~~Q~~~i~~il~-------------------g~d~lv~apTGsGKTl~~~lp~l--~~---~g~~lvi~P~~aL~~q 80 (523)
T 1oyw_A 25 QFRPGQEEIIDTVLS-------------------GRDCLVVMPTGGGKSLCYQIPAL--LL---NGLTVVVSPLISLMKD 80 (523)
T ss_dssp SCCTTHHHHHHHHHT-------------------TCCEEEECSCHHHHHHHHHHHHH--HS---SSEEEEECSCHHHHHH
T ss_pred CCCHHHHHHHHHHHc-------------------CCCEEEECCCCcHHHHHHHHHHH--Hh---CCCEEEECChHHHHHH
Confidence 689999999998864 56899999999999986654432 11 356899999 789999
Q ss_pred HHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhh
Q 006698 148 WEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG 227 (635)
Q Consensus 148 W~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~ 227 (635)
|.+++.++. +++..+++.... ........... ....+++++|++.+... .....
T Consensus 81 ~~~~l~~~g--i~~~~l~~~~~~----~~~~~~~~~~~-----------------~~~~~ilv~Tpe~l~~~---~~~~~ 134 (523)
T 1oyw_A 81 QVDQLQANG--VAAACLNSTQTR----EQQLEVMTGCR-----------------TGQIRLLYIAPERLMLD---NFLEH 134 (523)
T ss_dssp HHHHHHHTT--CCEEEECTTSCH----HHHHHHHHHHH-----------------HTCCSEEEECHHHHTST---THHHH
T ss_pred HHHHHHHcC--CcEEEEeCCCCH----HHHHHHHHHHh-----------------cCCCCEEEECHHHHhCh---HHHHH
Confidence 999999874 333333332111 11111111110 13568999999987532 12222
Q ss_pred hhccCCCEEEEeCCCcCCCccc---HHHHH----HHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhh
Q 006698 228 ILLDLPGLFVFDEGHTPRNDDT---CMFKA----LSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300 (635)
Q Consensus 228 ~~~~~~~~vIvDEaH~~kn~~s---~~~~~----l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~ 300 (635)
+....+++|||||||.+...+. ..+.. ...++...+++|||||......++...+.+-.|.
T Consensus 135 l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~------------ 202 (523)
T 1oyw_A 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPL------------ 202 (523)
T ss_dssp HTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCE------------
T ss_pred HhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCe------------
Confidence 3335678999999999865431 12222 2334567899999999543333333322211110
Q ss_pred hhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHH
Q 006698 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFV 380 (635)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~ 380 (635)
+... . ..-|.....+..
T Consensus 203 -------------------------------------~~~~---~--~~r~~l~~~v~~--------------------- 219 (523)
T 1oyw_A 203 -------------------------------------IQIS---S--FDRPNIRYMLME--------------------- 219 (523)
T ss_dssp -------------------------------------EEEC---C--CCCTTEEEEEEE---------------------
T ss_pred -------------------------------------EEeC---C--CCCCceEEEEEe---------------------
Confidence 0000 0 001111111100
Q ss_pred HHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhh
Q 006698 381 ELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460 (635)
Q Consensus 381 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~ 460 (635)
...+...+.+.+...++.++||||+++..++.+.+.|...
T Consensus 220 ---------------------------------------~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~- 259 (523)
T 1oyw_A 220 ---------------------------------------KFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSK- 259 (523)
T ss_dssp ---------------------------------------CSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHT-
T ss_pred ---------------------------------------CCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHC-
Confidence 0224555667776668889999999999999999999987
Q ss_pred cccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCC
Q 006698 461 NWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQ 540 (635)
Q Consensus 461 ~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ 540 (635)
|+.+..+||+++.++|..+++.|.+ ++.+|++ +|.+++.|||+++++.||++|+|+|+..+.|++||++|.|+
T Consensus 260 ----g~~~~~~h~~l~~~~R~~~~~~f~~--g~~~vlV-aT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~ 332 (523)
T 1oyw_A 260 ----GISAAAYHAGLENNVRADVQEKFQR--DDLQIVV-ATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGL 332 (523)
T ss_dssp ----TCCEEEECTTSCHHHHHHHHHHHHT--TSCSEEE-ECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSS
T ss_pred ----CCCEEEecCCCCHHHHHHHHHHHHc--CCCeEEE-EechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCC
Confidence 9999999999999999999999998 5577776 69999999999999999999999999999999999999998
Q ss_pred cceEEE
Q 006698 541 KRVVHV 546 (635)
Q Consensus 541 ~~~V~v 546 (635)
...+.+
T Consensus 333 ~~~~~l 338 (523)
T 1oyw_A 333 PAEAML 338 (523)
T ss_dssp CEEEEE
T ss_pred CceEEE
Confidence 765554
No 28
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.97 E-value=6.8e-29 Score=261.49 Aligned_cols=322 Identities=15% Similarity=0.099 Sum_probs=215.8
Q ss_pred HhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccch
Q 006698 67 RKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSML 145 (635)
Q Consensus 67 ~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~ 145 (635)
..+|+|+|.+++..+++ ++++++..+||+|||+.++..+.... ....++||||| ..|.
T Consensus 19 ~~~~~~~Q~~~i~~i~~-------------------~~~~lv~apTGsGKT~~~l~~~~~~~--~~~~~~lil~Pt~~L~ 77 (414)
T 3oiy_A 19 GKDLTGYQRLWAKRIVQ-------------------GKSFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLV 77 (414)
T ss_dssp SSCCCHHHHHHHHHHTT-------------------TCCEECCSCSSSSHHHHHHHHHHHHH--TTTCCEEEEESSHHHH
T ss_pred CCCCCHHHHHHHHHHhc-------------------CCCEEEEeCCCCCHHHHHHHHHHHHh--cCCCEEEEEECCHHHH
Confidence 44699999999998853 56899999999999996655544433 44567899999 7889
Q ss_pred HHHHHHHHHhcC-CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchh
Q 006698 146 LTWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224 (635)
Q Consensus 146 ~qW~~E~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~ 224 (635)
.||.+++.++.+ ++++..+.+....... ... ..... ....+|+++|++.+.....
T Consensus 78 ~q~~~~~~~~~~~~~~v~~~~g~~~~~~~-~~~---~~~l~-----------------~~~~~Iiv~Tp~~l~~~l~--- 133 (414)
T 3oiy_A 78 KQTLERLQKLADEKVKIFGFYSSMKKEEK-EKF---EKSFE-----------------EDDYHILVFSTQFVSKNRE--- 133 (414)
T ss_dssp HHHHHHHHHHCCSSCCEEECCTTSCHHHH-HHH---HHHHH-----------------HTCCSEEEEEHHHHHHCHH---
T ss_pred HHHHHHHHHHccCCceEEEEECCCChhhH-HHH---HHHhh-----------------cCCCCEEEECHHHHHHHHH---
Confidence 999999999875 5555555442211000 001 11110 1237899999999876542
Q ss_pred hhhhhccCCCEEEEeCCCcCC-------------CcccH-HHHHHHhc------------ccCcEEEEecccCCCChhhH
Q 006698 225 LSGILLDLPGLFVFDEGHTPR-------------NDDTC-MFKALSRI------------KTRRRIILSGTPFQNNFQEL 278 (635)
Q Consensus 225 ~~~~~~~~~~~vIvDEaH~~k-------------n~~s~-~~~~l~~l------------~~~~~l~LTgTP~~n~~~el 278 (635)
.+....+++||+||||.+. +.... ....+..+ .....+++||||......+.
T Consensus 134 --~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~ 211 (414)
T 3oiy_A 134 --KLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPL 211 (414)
T ss_dssp --HHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTH
T ss_pred --HhccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHH
Confidence 2444578999999999763 22222 22333333 44578999999766554322
Q ss_pred HHHHHhhhhhhhhhHHHHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEE
Q 006698 279 ENTLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV 358 (635)
Q Consensus 279 ~~ll~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v 358 (635)
+.- . .+. + .. ... ...+.......
T Consensus 212 ~~~-~-------------------------------------------------~~~-~---~~-~~~-~~~~~~i~~~~ 235 (414)
T 3oiy_A 212 LFR-D-------------------------------------------------LLN-F---TV-GRL-VSVARNITHVR 235 (414)
T ss_dssp HHH-H-------------------------------------------------HHS-C---CS-SCC-CCCCCSEEEEE
T ss_pred HHH-H-------------------------------------------------hhc-c---Cc-Ccc-ccccccchhee
Confidence 100 0 000 0 00 000 00111111111
Q ss_pred EeCCcHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCe
Q 006698 359 ILQPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEK 438 (635)
Q Consensus 359 ~~~~s~~q~~~y~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~k 438 (635)
+. ..|...+.+++.. .+.+
T Consensus 236 -~~-----------------------------------------------------------~~~~~~l~~~l~~-~~~~ 254 (414)
T 3oiy_A 236 -IS-----------------------------------------------------------SRSKEKLVELLEI-FRDG 254 (414)
T ss_dssp -ES-----------------------------------------------------------SCCHHHHHHHHHH-HCSS
T ss_pred -ec-----------------------------------------------------------cCHHHHHHHHHHH-cCCC
Confidence 00 1244445555555 4589
Q ss_pred EEEEcCChhHHHHHHHHHHhhhcccCCceEE-EEeCCCCHHHHHHHHHHhcCCCCCcEEEEEc---cCCccccccccc-C
Q 006698 439 VLVFSQYIEPLTLIMEQLRHRFNWREGQEVL-YMDGKQDVKKRQSSINVLNDPSSQARIMLAS---TKACCEGINLVG-A 513 (635)
Q Consensus 439 viIFs~~~~~~~~l~~~L~~~~~~~~g~~~~-~i~G~~~~~~r~~~i~~F~~~~~~~~vll~s---t~~~~~GlnL~~-a 513 (635)
+||||+....++.+.+.|... |+.+. .++|. +|+ ++.|++ ++++||+++ |+++++|+|+++ +
T Consensus 255 ~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~h~~----~r~--~~~f~~--g~~~vLvat~s~T~~~~~GiDip~~v 321 (414)
T 3oiy_A 255 ILIFAQTEEEGKELYEYLKRF-----KFNVGETWSEF----EKN--FEDFKV--GKINILIGVQAYYGKLTRGVDLPERI 321 (414)
T ss_dssp EEEEESSHHHHHHHHHHHHHT-----TCCEEESSSCH----HHH--HHHHHT--TSCSEEEEECCTTCCCCCCCCCTTTC
T ss_pred EEEEECCHHHHHHHHHHHHHc-----CCceehhhcCc----chH--HHHHhC--CCCeEEEEecCcCchhhccCcccccc
Confidence 999999999999999999987 89988 88884 444 999998 667888854 999999999999 9
Q ss_pred CeEEEeCCC--CChhhHHhhhhhhhhcCCc--ceEEEEEEEeCCChHHHHHHHHHHhhhh
Q 006698 514 SRVVLLDVV--WNPFVERQAISRAYRLGQK--RVVHVYHLITSETLEWDKLRRQARKVWW 569 (635)
Q Consensus 514 ~~vi~~d~~--wnp~~~~Qa~gR~~R~GQ~--~~V~vy~li~~~tiEe~i~~~~~~K~~~ 569 (635)
++||+||+| +++..+.||+||++|.|+. +...++.|+ -|...++.+++....
T Consensus 322 ~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~----~~~~~~~~l~~~~~~ 377 (414)
T 3oiy_A 322 KYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE----EDEEIFESLKTRLLL 377 (414)
T ss_dssp CEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC----CCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE----ccHHHHHHHHHHhcc
Confidence 999999999 9999999999999999975 566666676 245666666665553
No 29
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.97 E-value=1.2e-28 Score=270.25 Aligned_cols=345 Identities=17% Similarity=0.182 Sum_probs=215.4
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCC-----CCCcEEEeC-c
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP-----RCRPVIIAP-R 142 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~-----~~~~LIv~P-~ 142 (635)
.|+|+|.+++..++.. .++++|+..+||+|||++++..+...+.... ..++||||| .
T Consensus 94 ~~~~~Q~~~i~~~l~~-----------------~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr 156 (563)
T 3i5x_A 94 GLTPVQQKTIKPILSS-----------------EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTR 156 (563)
T ss_dssp SCCHHHHHHHHHHHSS-----------------SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSH
T ss_pred CCCHHHHHHHHHHhcC-----------------CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcH
Confidence 5999999999888631 2568999999999999987766655554433 236799999 7
Q ss_pred cchHHHHHHHHHhcC---C---CcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHH
Q 006698 143 SMLLTWEEEFKKWGI---D---IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLF 216 (635)
Q Consensus 143 ~l~~qW~~E~~~~~~---~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~ 216 (635)
.|..||.+++.++.. + ..+..+.+ +........... ....+|+|+|++.+
T Consensus 157 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~--------------------~~~~~Iiv~Tp~~l 212 (563)
T 3i5x_A 157 DLALQIEAEVKKIHDMNYGLKKYACVSLVG----GTDFRAAMNKMN--------------------KLRPNIVIATPGRL 212 (563)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECT----TSCHHHHHHHHH--------------------HHCCSEEEECHHHH
T ss_pred HHHHHHHHHHHHHHhhccccCceeEEEEEC----CcCHHHHHHHHh--------------------cCCCCEEEECcHHH
Confidence 888999999998632 1 11222211 111111110000 13578999999998
Q ss_pred HHhhcchhhhhhhccCCCEEEEeCCCcCCCcc--cHHHHHHHhc--------ccCcEEEEecccCCCChhhHHHHHHhhh
Q 006698 217 EKLVSGDELSGILLDLPGLFVFDEGHTPRNDD--TCMFKALSRI--------KTRRRIILSGTPFQNNFQELENTLSLVR 286 (635)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~l--------~~~~~l~LTgTP~~n~~~el~~ll~~l~ 286 (635)
....... .......+++||+||||++.... ......+..+ ...+++++||||-. ++..+....
T Consensus 213 ~~~l~~~--~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~----~v~~~~~~~- 285 (563)
T 3i5x_A 213 IDVLEKY--SNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD----KVQKLANNI- 285 (563)
T ss_dssp HHHHHHH--HHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT----HHHHHTTTT-
T ss_pred HHHHHhc--cccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCH----HHHHHHHHh-
Confidence 7655331 12234557999999999986543 1122222222 13468999999821 111100000
Q ss_pred hhhhhhHHHHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHH
Q 006698 287 QEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQ 366 (635)
Q Consensus 287 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q 366 (635)
... . .......................+.......
T Consensus 286 -------------~~~-------------------~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 320 (563)
T 3i5x_A 286 -------------MNK-------------------K------------ECLFLDTVDKNEPEAHERIDQSVVISEKFAN- 320 (563)
T ss_dssp -------------CCS-------------------S------------EEEEEESSCSSSCSSCTTEEEEEEEESSTTH-
T ss_pred -------------cCC-------------------C------------ceEEEeccCCCCccccccCceEEEECchhHh-
Confidence 000 0 0000000000000000111111111111000
Q ss_pred HHHHHHHhhhhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHh-cCCCeEEEEcCC
Q 006698 367 KRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL-STNEKVLVFSQY 445 (635)
Q Consensus 367 ~~~y~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~-~~~~kviIFs~~ 445 (635)
. ....+..+...+.. ..+.++|||++.
T Consensus 321 -~---------------------------------------------------~~~~~~~l~~~~~~~~~~~~~iVF~~s 348 (563)
T 3i5x_A 321 -S---------------------------------------------------IFAAVEHIKKQIKERDSNYKAIIFAPT 348 (563)
T ss_dssp -H---------------------------------------------------HHHHHHHHHHHHHHTTTCCEEEEECSC
T ss_pred -h---------------------------------------------------HHHHHHHHHHHHhhcCCCCcEEEEcCc
Confidence 0 00112223333333 378899999999
Q ss_pred hhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCCh
Q 006698 446 IEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525 (635)
Q Consensus 446 ~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp 525 (635)
...++.+.+.|...+. .|+.+..++|+++..+|..+++.|++ +...||+ +|+++++|||+++++.||++|+|+++
T Consensus 349 ~~~~~~l~~~L~~~~~--~~~~v~~~h~~~~~~~R~~~~~~f~~--g~~~vLv-aT~~~~~GiDip~v~~VI~~~~p~s~ 423 (563)
T 3i5x_A 349 VKFTSFLCSILKNEFK--KDLPILEFHGKITQNKRTSLVKRFKK--DESGILV-CTDVGARGMDFPNVHEVLQIGVPSEL 423 (563)
T ss_dssp HHHHHHHHHHHHHHHT--TTSCEEEESTTSCHHHHHHHHHHHHH--CSSEEEE-ECGGGTSSCCCTTCCEEEEESCCSST
T ss_pred HHHHHHHHHHHHHhcc--CCceEEEecCCCCHHHHHHHHHHHhc--CCCCEEE-EcchhhcCCCcccCCEEEEECCCCch
Confidence 9999999999988643 27899999999999999999999997 5677777 69999999999999999999999999
Q ss_pred hhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhh
Q 006698 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567 (635)
Q Consensus 526 ~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~ 567 (635)
..+.||+||++|.|+.- .++.|+..+ |...++.++++.
T Consensus 424 ~~y~Qr~GRagR~g~~g--~~i~~~~~~--e~~~~~~l~~~~ 461 (563)
T 3i5x_A 424 ANYIHRIGRTARSGKEG--SSVLFICKD--ELPFVRELEDAK 461 (563)
T ss_dssp THHHHHHTTSSCTTCCE--EEEEEEEGG--GHHHHHHHHHHH
T ss_pred hhhhhhcCccccCCCCc--eEEEEEchh--HHHHHHHHHHHh
Confidence 99999999999999654 444455554 455666665543
No 30
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.96 E-value=4.7e-29 Score=270.97 Aligned_cols=314 Identities=14% Similarity=0.065 Sum_probs=209.1
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLT 147 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~q 147 (635)
.++|+|.+++..++. ++.+++..+||+|||+..+..+.. ..+.+|||+| .+|+.|
T Consensus 44 ~~rp~Q~~~i~~il~-------------------g~d~lv~~pTGsGKTl~~~lpal~-----~~g~~lVisP~~~L~~q 99 (591)
T 2v1x_A 44 KFRPLQLETINVTMA-------------------GKEVFLVMPTGGGKSLCYQLPALC-----SDGFTLVICPLISLMED 99 (591)
T ss_dssp SCCTTHHHHHHHHHT-------------------TCCEEEECCTTSCTTHHHHHHHHT-----SSSEEEEECSCHHHHHH
T ss_pred CCCHHHHHHHHHHHc-------------------CCCEEEEECCCChHHHHHHHHHHH-----cCCcEEEEeCHHHHHHH
Confidence 699999999998865 568999999999999765544421 2457899999 789999
Q ss_pred HHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHH---hhcchh
Q 006698 148 WEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEK---LVSGDE 224 (635)
Q Consensus 148 W~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~---~~~~~~ 224 (635)
|.+.+.++. +++..+++.... ............ .....+++++|++.+.. .. +.
T Consensus 100 ~~~~l~~~g--i~~~~l~~~~~~----~~~~~~~~~l~~---------------~~~~~~Ilv~Tpe~L~~~~~~~--~~ 156 (591)
T 2v1x_A 100 QLMVLKQLG--ISATMLNASSSK----EHVKWVHAEMVN---------------KNSELKLIYVTPEKIAKSKMFM--SR 156 (591)
T ss_dssp HHHHHHHHT--CCEEECCSSCCH----HHHHHHHHHHHC---------------TTCCCCEEEECHHHHHSCHHHH--HH
T ss_pred HHHHHHhcC--CcEEEEeCCCCH----HHHHHHHHHhhc---------------ccCCCCEEEEChhHhhccHHHH--HH
Confidence 999999983 444444442211 111111111100 02467899999998743 11 11
Q ss_pred hh-hhhccCCCEEEEeCCCcCCCcc-------cHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHH
Q 006698 225 LS-GILLDLPGLFVFDEGHTPRNDD-------TCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTV 296 (635)
Q Consensus 225 ~~-~~~~~~~~~vIvDEaH~~kn~~-------s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~ 296 (635)
+. ......+++|||||||.+...+ ..+......++...+++|||||-.....++...+..-.
T Consensus 157 l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~---------- 226 (591)
T 2v1x_A 157 LEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEK---------- 226 (591)
T ss_dssp HHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCS----------
T ss_pred HHhhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCC----------
Confidence 11 1223467999999999975432 12222233346678999999994322222211111000
Q ss_pred HhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhh
Q 006698 297 RKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGV 376 (635)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~ 376 (635)
+..... ...-|.....+.....
T Consensus 227 ---------------------------------------~~~~~~-----~~~r~nl~~~v~~~~~-------------- 248 (591)
T 2v1x_A 227 ---------------------------------------CFTFTA-----SFNRPNLYYEVRQKPS-------------- 248 (591)
T ss_dssp ---------------------------------------CEEEEC-----CCCCTTEEEEEEECCS--------------
T ss_pred ---------------------------------------cEEEec-----CCCCcccEEEEEeCCC--------------
Confidence 000000 0011111111111000
Q ss_pred hhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc-CCCeEEEEcCChhHHHHHHHH
Q 006698 377 KSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS-TNEKVLVFSQYIEPLTLIMEQ 455 (635)
Q Consensus 377 ~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~-~~~kviIFs~~~~~~~~l~~~ 455 (635)
....++..+.+++... .+.++||||+.+..++.+.+.
T Consensus 249 ------------------------------------------~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~ 286 (591)
T 2v1x_A 249 ------------------------------------------NTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVS 286 (591)
T ss_dssp ------------------------------------------SHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHH
T ss_pred ------------------------------------------cHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHH
Confidence 0012444556666543 788999999999999999999
Q ss_pred HHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhh
Q 006698 456 LRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRA 535 (635)
Q Consensus 456 L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~ 535 (635)
|... |+.+..++|+++.++|..+++.|.+ ++.+|++ +|.+++.|||+++++.||+||+|+++..|.|++||+
T Consensus 287 L~~~-----g~~~~~~h~~l~~~~R~~~~~~F~~--g~~~VlV-AT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRa 358 (591)
T 2v1x_A 287 LQNL-----GIHAGAYHANLEPEDKTTVHRKWSA--NEIQVVV-ATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRA 358 (591)
T ss_dssp HHHT-----TCCEEEECTTSCHHHHHHHHHHHHT--TSSSEEE-ECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTS
T ss_pred HHHC-----CCCEEEecCCCCHHHHHHHHHHHHc--CCCeEEE-EechhhcCCCcccccEEEEeCCCCCHHHHHHHhccC
Confidence 9987 9999999999999999999999997 5577776 699999999999999999999999999999999999
Q ss_pred hhcCCcceEEEE
Q 006698 536 YRLGQKRVVHVY 547 (635)
Q Consensus 536 ~R~GQ~~~V~vy 547 (635)
+|.|+...+.++
T Consensus 359 GR~G~~g~~i~l 370 (591)
T 2v1x_A 359 GRDDMKADCILY 370 (591)
T ss_dssp CTTSSCEEEEEE
T ss_pred CcCCCCceEEEE
Confidence 999987655544
No 31
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.96 E-value=3.1e-28 Score=266.97 Aligned_cols=345 Identities=17% Similarity=0.179 Sum_probs=216.3
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCC-----CCCcEEEeC-c
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP-----RCRPVIIAP-R 142 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~-----~~~~LIv~P-~ 142 (635)
.|+|||.+++..++.. .++.+|+..+||+|||+.++..+...+.... ..++||||| .
T Consensus 43 ~~~~~Q~~~i~~il~~-----------------~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr 105 (579)
T 3sqw_A 43 GLTPVQQKTIKPILSS-----------------EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTR 105 (579)
T ss_dssp SCCHHHHHHHHHHHCS-----------------SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSH
T ss_pred CCCHHHHHHHHHHHcc-----------------CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchH
Confidence 5999999999888621 2568999999999999987766655544432 236799999 6
Q ss_pred cchHHHHHHHHHhcC------CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHH
Q 006698 143 SMLLTWEEEFKKWGI------DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLF 216 (635)
Q Consensus 143 ~l~~qW~~E~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~ 216 (635)
.|..||.+++.++.. ...+....+ +.........+. ....+|+|+|++.+
T Consensus 106 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g----g~~~~~~~~~l~--------------------~~~~~IlV~Tp~~l 161 (579)
T 3sqw_A 106 DLALQIEAEVKKIHDMNYGLKKYACVSLVG----GTDFRAAMNKMN--------------------KLRPNIVIATPGRL 161 (579)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECT----TSCHHHHHHHHH--------------------HHCCSEEEECHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccceEEEEEEC----CccHHHHHHHHh--------------------cCCCCEEEECHHHH
Confidence 888999999998742 122222211 111111111010 12578999999998
Q ss_pred HHhhcchhhhhhhccCCCEEEEeCCCcCCCcc--cHHHHHHHhc---c-----cCcEEEEecccCCCChhhHHHHHHhhh
Q 006698 217 EKLVSGDELSGILLDLPGLFVFDEGHTPRNDD--TCMFKALSRI---K-----TRRRIILSGTPFQNNFQELENTLSLVR 286 (635)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~l---~-----~~~~l~LTgTP~~n~~~el~~ll~~l~ 286 (635)
...... ........+++||+||||++.... ......+..+ . ...++++|||+-. .+..+...+
T Consensus 162 ~~~l~~--~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~----~v~~~~~~~- 234 (579)
T 3sqw_A 162 IDVLEK--YSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD----KVQKLANNI- 234 (579)
T ss_dssp HHHHHH--HHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT----HHHHHTTTT-
T ss_pred HHHHHh--ccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCCh----HHHHHHHHH-
Confidence 766533 122344568999999999986543 1222222222 1 4478999999731 110000000
Q ss_pred hhhhhhHHHHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHH
Q 006698 287 QEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQ 366 (635)
Q Consensus 287 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q 366 (635)
.. . -.......................+..+....
T Consensus 235 -------------l~---------------------~----------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~- 269 (579)
T 3sqw_A 235 -------------MN---------------------K----------KECLFLDTVDKNEPEAHERIDQSVVISEKFAN- 269 (579)
T ss_dssp -------------CC---------------------S----------SEEEEEESSCSSSCSSCTTEEEEEEEESSTTH-
T ss_pred -------------cC---------------------C----------CceEEEeecCccccccccccceEEEEecchhh-
Confidence 00 0 00000000000000000111111111111000
Q ss_pred HHHHHHHhhhhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHh-cCCCeEEEEcCC
Q 006698 367 KRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL-STNEKVLVFSQY 445 (635)
Q Consensus 367 ~~~y~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~-~~~~kviIFs~~ 445 (635)
. ....+..+...+.. ..+.++||||+.
T Consensus 270 -~---------------------------------------------------~~~~~~~l~~~~~~~~~~~~~iVF~~t 297 (579)
T 3sqw_A 270 -S---------------------------------------------------IFAAVEHIKKQIKERDSNYKAIIFAPT 297 (579)
T ss_dssp -H---------------------------------------------------HHHHHHHHHHHHHHTTTCCEEEEECSS
T ss_pred -h---------------------------------------------------HHHHHHHHHHHHhhcCCCCcEEEECCc
Confidence 0 00122233333333 368899999999
Q ss_pred hhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCCh
Q 006698 446 IEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP 525 (635)
Q Consensus 446 ~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp 525 (635)
...++.+.+.|...+. .|+.+..++|+++..+|..+++.|++ +..+||+ +|+++++|||++++++||++|+|+++
T Consensus 298 ~~~~~~l~~~L~~~~~--~~~~v~~~hg~~~~~~R~~~~~~F~~--g~~~vLV-aT~~~~~GiDip~v~~VI~~~~p~s~ 372 (579)
T 3sqw_A 298 VKFTSFLCSILKNEFK--KDLPILEFHGKITQNKRTSLVKRFKK--DESGILV-CTDVGARGMDFPNVHEVLQIGVPSEL 372 (579)
T ss_dssp HHHHHHHHHHHHHHHT--TTSCEEEESTTSCHHHHHHHHHHHHH--CSSEEEE-ECGGGTSSCCCTTCCEEEEESCCSST
T ss_pred HHHHHHHHHHHHHhhc--CCCcEEEecCCCCHHHHHHHHHHhhc--CCCeEEE-EcchhhcCCCcccCCEEEEcCCCCCH
Confidence 9999999999987653 37899999999999999999999997 5677776 69999999999999999999999999
Q ss_pred hhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhh
Q 006698 526 FVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567 (635)
Q Consensus 526 ~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~ 567 (635)
..+.||+||++|.|+.-.+ +.|++.. |...++.+++..
T Consensus 373 ~~y~Qr~GRagR~g~~g~~--i~~~~~~--e~~~~~~l~~~~ 410 (579)
T 3sqw_A 373 ANYIHRIGRTARSGKEGSS--VLFICKD--ELPFVRELEDAK 410 (579)
T ss_dssp THHHHHHTTSSCTTCCEEE--EEEEEGG--GHHHHHHHHHHH
T ss_pred HHhhhhccccccCCCCceE--EEEEccc--HHHHHHHHHHHh
Confidence 9999999999999975444 4455543 555666665543
No 32
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.96 E-value=3.7e-30 Score=277.15 Aligned_cols=317 Identities=15% Similarity=0.165 Sum_probs=189.9
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC-CCCCcEEEeC-ccchH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH-PRCRPVIIAP-RSMLL 146 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~-~~~~~LIv~P-~~l~~ 146 (635)
.|+|||.+++..+++. .++++|+..+||+|||++++..+...+... ...++||||| ..|+.
T Consensus 141 ~p~~~Q~~ai~~i~~~-----------------~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~ 203 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN-----------------PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELAR 203 (508)
T ss_dssp ECCCTTSSSHHHHHCS-----------------SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHH
T ss_pred CcHHHHHHHHHHHHcC-----------------CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHH
Confidence 5899999999888642 146899999999999998776665554333 3457899999 67999
Q ss_pred HHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhh
Q 006698 147 TWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELS 226 (635)
Q Consensus 147 qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~ 226 (635)
||.+++.+++....+....+.. +.... ......+|+++|++.+.......
T Consensus 204 Q~~~~~~~~~~~~~~~~~~~~~--~~~~~-------------------------~~~~~~~Ivv~T~~~l~~~l~~~--- 253 (508)
T 3fho_A 204 QIMDVVTEMGKYTEVKTAFGIK--DSVPK-------------------------GAKIDAQIVIGTPGTVMDLMKRR--- 253 (508)
T ss_dssp HHHHHHHHHSTTSSCCEEC-------------------------------------CCCCSEEEECHHHHHHHHHTT---
T ss_pred HHHHHHHHhCCccCeeEEEEeC--Ccccc-------------------------cccCCCCEEEECHHHHHHHHHcC---
Confidence 9999999986543322221110 00000 01236789999999887655331
Q ss_pred hhhccCCCEEEEeCCCcCCCcc--cHHHH-HHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhh
Q 006698 227 GILLDLPGLFVFDEGHTPRNDD--TCMFK-ALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302 (635)
Q Consensus 227 ~~~~~~~~~vIvDEaH~~kn~~--s~~~~-~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~ 302 (635)
.+....+++||+||||++.... ..... .+..+ +..++++|||||- +...++. ..+.+.
T Consensus 254 ~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~-~~~~~~~---~~~~~~-------------- 315 (508)
T 3fho_A 254 QLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFS-ERVEKYA---ERFAPN-------------- 315 (508)
T ss_dssp CSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCS-THHHHHH---HHHSTT--------------
T ss_pred CccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCC-HHHHHHH---HHhcCC--------------
Confidence 2234568999999999986521 22222 33333 3556799999983 1111111 000000
Q ss_pred hhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHHHH
Q 006698 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVEL 382 (635)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~~~ 382 (635)
+.......... ..+......+.+
T Consensus 316 ---------------------------------~~~i~~~~~~~--~~~~~~~~~~~~---------------------- 338 (508)
T 3fho_A 316 ---------------------------------ANEIRLKTEEL--SVEGIKQLYMDC---------------------- 338 (508)
T ss_dssp ---------------------------------CEEECCCCCC------CCCCEEEEC----------------------
T ss_pred ---------------------------------CeEEEeccccC--CcccceEEEEEC----------------------
Confidence 00000000000 000001111111
Q ss_pred HHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcc
Q 006698 383 NYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNW 462 (635)
Q Consensus 383 ~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~ 462 (635)
.....|...+.+++....+.++||||+.+..++.+...|...
T Consensus 339 -----------------------------------~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~--- 380 (508)
T 3fho_A 339 -----------------------------------QSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTAD--- 380 (508)
T ss_dssp -------------------------------------CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTT---
T ss_pred -----------------------------------CchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhC---
Confidence 112335566667776667889999999999999999999886
Q ss_pred cCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCC------CChhhHHhhhhhhh
Q 006698 463 REGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVV------WNPFVERQAISRAY 536 (635)
Q Consensus 463 ~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~------wnp~~~~Qa~gR~~ 536 (635)
|+.+..++|+++..+|..+++.|++ ++.+||+ +|+++++|+|+++++.||++|+| +++..+.|++||++
T Consensus 381 --~~~v~~~hg~~~~~~R~~il~~f~~--g~~~VLV-aT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRag 455 (508)
T 3fho_A 381 --GHTVACLTGNLEGAQRDAIMDSFRV--GTSKVLV-TTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTG 455 (508)
T ss_dssp --TCCCCEEC-----CTTGGGTHHHHS--SSCCCCE-ECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC
T ss_pred --CCcEEEEeCCCCHHHHHHHHHHHHC--CCCeEEE-eCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcC
Confidence 8999999999999999999999987 5566666 79999999999999999999999 78999999999999
Q ss_pred hcCCcceEEEEEEEeC
Q 006698 537 RLGQKRVVHVYHLITS 552 (635)
Q Consensus 537 R~GQ~~~V~vy~li~~ 552 (635)
|.|+...+.+ |+..
T Consensus 456 R~g~~g~~i~--l~~~ 469 (508)
T 3fho_A 456 RFGRVGVSIN--FVHD 469 (508)
T ss_dssp -----CEEEE--EECT
T ss_pred CCCCCcEEEE--EEeC
Confidence 9996555544 4443
No 33
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.1e-27 Score=270.38 Aligned_cols=356 Identities=14% Similarity=0.106 Sum_probs=217.2
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~ 146 (635)
-+|+|||.+++..+.. +++++++.+||+|||+++...+...+.. ..++||++| ..|..
T Consensus 85 f~L~~~Q~eai~~l~~-------------------g~~vLV~apTGSGKTlva~lai~~~l~~--g~rvL~l~PtkaLa~ 143 (1010)
T 2xgj_A 85 FTLDPFQDTAISCIDR-------------------GESVLVSAHTSAGKTVVAEYAIAQSLKN--KQRVIYTSPIKALSN 143 (1010)
T ss_dssp SCCCHHHHHHHHHHHH-------------------TCEEEEECCTTSCHHHHHHHHHHHHHHT--TCEEEEEESSHHHHH
T ss_pred CCCCHHHHHHHHHHHc-------------------CCCEEEECCCCCChHHHHHHHHHHHhcc--CCeEEEECChHHHHH
Confidence 3699999999999865 5689999999999999987666555443 357899999 68999
Q ss_pred HHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhh
Q 006698 147 TWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELS 226 (635)
Q Consensus 147 qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~ 226 (635)
||.+++.+++. .+..+.+. .. .....+|+|+|++.+.......
T Consensus 144 Q~~~~l~~~~~--~vglltGd-----~~---------------------------~~~~~~IvV~Tpe~L~~~L~~~--- 186 (1010)
T 2xgj_A 144 QKYRELLAEFG--DVGLMTGD-----IT---------------------------INPDAGCLVMTTEILRSMLYRG--- 186 (1010)
T ss_dssp HHHHHHHHHHS--CEEEECSS-----CE---------------------------ECTTCSEEEEEHHHHHHHHHHT---
T ss_pred HHHHHHHHHhC--CEEEEeCC-----Cc---------------------------cCCCCCEEEEcHHHHHHHHHcC---
Confidence 99999998865 23223221 11 0135689999999987655321
Q ss_pred hhhccCCCEEEEeCCCcCCCcc--cHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhhh
Q 006698 227 GILLDLPGLFVFDEGHTPRNDD--TCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREI 303 (635)
Q Consensus 227 ~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~~ 303 (635)
......+++||+||||++.+.. ......+..+ ...+.++||||+ .| ..++...+..+...
T Consensus 187 ~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi-~n-~~e~a~~l~~~~~~--------------- 249 (1010)
T 2xgj_A 187 SEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATI-PN-AMEFAEWICKIHSQ--------------- 249 (1010)
T ss_dssp CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCC-TT-HHHHHHHHHHHHTS---------------
T ss_pred cchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCeEEEEcCCC-CC-HHHHHHHHHhhcCC---------------
Confidence 1233457899999999997652 2233334444 456789999995 22 23322211110000
Q ss_pred hHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEE----------eCCc-HHHHHHHHH
Q 006698 304 SKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVI----------LQPD-EFQKRLCKA 372 (635)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~----------~~~s-~~q~~~y~~ 372 (635)
+...... ..-|......+. ++.. .....-|..
T Consensus 250 --------------------------------~~~vi~~-----~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (1010)
T 2xgj_A 250 --------------------------------PCHIVYT-----NFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQK 292 (1010)
T ss_dssp --------------------------------CEEEEEE-----CCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHH
T ss_pred --------------------------------CeEEEec-----CCCcccceEEEEecCCcceeeeeccccccchHHHHH
Confidence 0000000 000100111111 1100 000000111
Q ss_pred HhhhhhHHHHHHHHhh-hcCCCCCCCccccccCccchHHHhhccc---CccccchHHHHHHHHHhcCCCeEEEEcCChhH
Q 006698 373 VEGVKSFVELNYCVSL-LSVHPSLLPQQFFESFDVDSAKLARLKL---DPEAGIKTRFLLILLELSTNEKVLVFSQYIEP 448 (635)
Q Consensus 373 ~~~~~~~~~~~~~~~~-~~~~p~l~~~~~~~~~~~~~~~l~~~~~---~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~ 448 (635)
... .+.. ....|.- . ... .......+. .......+..+...+....+.++|||+..+..
T Consensus 293 ~~~---------~l~~~~~~~~~~---~---~~~--g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~ 355 (1010)
T 2xgj_A 293 AMA---------SISNQIGDDPNS---T---DSR--GKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRD 355 (1010)
T ss_dssp HHH---------TCC--------------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHH
T ss_pred HHH---------HHhhhhcccccc---c---ccc--cccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHH
Confidence 000 0000 0000000 0 000 000000000 00002344555555555567799999999999
Q ss_pred HHHHHHHHHhhhcccC-----------------------------------CceEEEEeCCCCHHHHHHHHHHhcCCCCC
Q 006698 449 LTLIMEQLRHRFNWRE-----------------------------------GQEVLYMDGKQDVKKRQSSINVLNDPSSQ 493 (635)
Q Consensus 449 ~~~l~~~L~~~~~~~~-----------------------------------g~~~~~i~G~~~~~~r~~~i~~F~~~~~~ 493 (635)
++.+...|... +... ...+..++|++++.+|+.+++.|++ |.
T Consensus 356 ~e~la~~L~~~-~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~--G~ 432 (1010)
T 2xgj_A 356 CEELALKMSKL-DFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQE--GF 432 (1010)
T ss_dssp HHHHHHTTTTS-CCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHhC-CCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhc--CC
Confidence 99998888652 0000 1127889999999999999999998 66
Q ss_pred cEEEEEccCCcccccccccCCeEEE----eCC----CCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChH
Q 006698 494 ARIMLASTKACCEGINLVGASRVVL----LDV----VWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556 (635)
Q Consensus 494 ~~vll~st~~~~~GlnL~~a~~vi~----~d~----~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiE 556 (635)
++||+ +|.++++|||+++++.||. ||. ||++..+.|++||++|.|+.....+|.++.++.-+
T Consensus 433 ikVLV-AT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~ 502 (1010)
T 2xgj_A 433 LKVLF-ATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEP 502 (1010)
T ss_dssp CSEEE-EEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCH
T ss_pred CcEEE-EehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCH
Confidence 78777 6999999999999999999 999 99999999999999999998889999998866433
No 34
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.96 E-value=2.6e-29 Score=269.75 Aligned_cols=318 Identities=16% Similarity=0.209 Sum_probs=102.2
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC-CCCCcEEEeC-ccch
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH-PRCRPVIIAP-RSML 145 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~-~~~~~LIv~P-~~l~ 145 (635)
..|+|+|.+++..++.. .++.+|+..+||+|||++++..+...+..+ ...++||||| ..|.
T Consensus 113 ~~p~~~Q~~ai~~il~~-----------------~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La 175 (479)
T 3fmp_B 113 NRPSKIQENALPLMLAE-----------------PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELA 175 (479)
T ss_dssp CSCCHHHHHHHHHHTSB-----------------SCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHH
T ss_pred CCCCHHHHHHHHHHHcC-----------------CCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHH
Confidence 36899999999988541 146899999999999988766554443332 2336899999 7788
Q ss_pred HHHHHHHHHhc---CCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcc
Q 006698 146 LTWEEEFKKWG---IDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222 (635)
Q Consensus 146 ~qW~~E~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~ 222 (635)
.||.+.+.++. +.+.+....+....... .....+|+|+|++.+......
T Consensus 176 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~Ivv~Tp~~l~~~l~~ 227 (479)
T 3fmp_B 176 LQTGKVIEQMGKFYPELKLAYAVRGNKLERG----------------------------QKISEQIVIGTPGTVLDWCSK 227 (479)
T ss_dssp HHHHHHHHHHHTTSTTCCEEEESTTCCCCTT----------------------------CCCCCSEEEECHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhCCCceEEEEeCCcccccc----------------------------ccCCCCEEEECchHHHHHHHh
Confidence 99988887764 23332222211100000 012458999999998766532
Q ss_pred hhhhhhhccCCCEEEEeCCCcCCCcc--cHHHHHHHh-c-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHh
Q 006698 223 DELSGILLDLPGLFVFDEGHTPRNDD--TCMFKALSR-I-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRK 298 (635)
Q Consensus 223 ~~~~~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~-l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~ 298 (635)
...+....+++||+||||++.... ......+.. + +..+++++||||- .+++.+....
T Consensus 228 --~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~----~~~~~~~~~~------------- 288 (479)
T 3fmp_B 228 --LKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFE----DSVWKFAQKV------------- 288 (479)
T ss_dssp --SCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCC----HHHHHHHHHH-------------
T ss_pred --cCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCC----HHHHHHHHHH-------------
Confidence 112223567999999999875421 122222322 3 4567899999982 1222111110
Q ss_pred hhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhh
Q 006698 299 SGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKS 378 (635)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~ 378 (635)
+|... .+.+.... .. ...+
T Consensus 289 ---------------------------------------------------~~~~~--~i~~~~~~--~~-~~~~----- 307 (479)
T 3fmp_B 289 ---------------------------------------------------VPDPN--VIKLKREE--ET-LDTI----- 307 (479)
T ss_dssp ---------------------------------------------------SSSEE--EEEEC-----------------
T ss_pred ---------------------------------------------------cCCCe--EEeccccc--cC-cCCc-----
Confidence 00000 00000000 00 0000
Q ss_pred HHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHh
Q 006698 379 FVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRH 458 (635)
Q Consensus 379 ~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~ 458 (635)
.+. .........|...+..++....+.++||||+....++.+.+.|..
T Consensus 308 --------~~~------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~ 355 (479)
T 3fmp_B 308 --------KQY------------------------YVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSK 355 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------eEE------------------------EEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHh
Confidence 000 000000123445555555555677999999999999999999998
Q ss_pred hhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCCh------hhHHhhh
Q 006698 459 RFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNP------FVERQAI 532 (635)
Q Consensus 459 ~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp------~~~~Qa~ 532 (635)
. |+.+..++|+++..+|..+++.|++ +..+||| +|+++++|+|++++++||+||+||++ ..+.||+
T Consensus 356 ~-----~~~v~~lh~~~~~~~R~~~~~~f~~--g~~~iLv-~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~ 427 (479)
T 3fmp_B 356 E-----GHQVALLSGEMMVEQRAAVIERFRE--GKEKVLV-TTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRI 427 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred C-----CccEEEecCCCCHHHHHHHHHHHHc--CCCcEEE-EccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHh
Confidence 7 8999999999999999999999997 5577766 79999999999999999999999876 6899999
Q ss_pred hhhhhcCCcceEEEEEEEeC
Q 006698 533 SRAYRLGQKRVVHVYHLITS 552 (635)
Q Consensus 533 gR~~R~GQ~~~V~vy~li~~ 552 (635)
||++|.|+.-. ++.|+..
T Consensus 428 GRagR~g~~G~--~i~~~~~ 445 (479)
T 3fmp_B 428 GRTGRFGKRGL--AVNMVDS 445 (479)
T ss_dssp --------------------
T ss_pred cccccCCCCce--EEEEEcC
Confidence 99999986443 4445543
No 35
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.96 E-value=1.1e-27 Score=278.09 Aligned_cols=314 Identities=12% Similarity=0.138 Sum_probs=210.7
Q ss_pred HhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccch
Q 006698 67 RKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSML 145 (635)
Q Consensus 67 ~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~ 145 (635)
.-+++|||.+++..++..+..| .+.++|++++||+|||.+++..+..... ..+++||+|| ..|.
T Consensus 601 ~~~~t~~Q~~ai~~il~~~~~g-------------~p~d~ll~~~TGsGKT~val~aa~~~~~--~g~~vlvlvPt~~La 665 (1151)
T 2eyq_A 601 PFETTPDQAQAINAVLSDMCQP-------------LAMDRLVCGDVGFGKTEVAMRAAFLAVD--NHKQVAVLVPTTLLA 665 (1151)
T ss_dssp CSCCCHHHHHHHHHHHHHHHSS-------------SCCEEEEECCCCTTTHHHHHHHHHHHHT--TTCEEEEECSSHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhcC-------------CcCcEEEECCCCCCHHHHHHHHHHHHHH--hCCeEEEEechHHHH
Confidence 4468999999999998765432 1247999999999999998765544433 3457899999 5678
Q ss_pred HHHHHHHHHhcCCC--cccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcch
Q 006698 146 LTWEEEFKKWGIDI--PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD 223 (635)
Q Consensus 146 ~qW~~E~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~ 223 (635)
.||.+++.+++.+. ++..+++... ...... ...... ....+|+|+|++.+...
T Consensus 666 ~Q~~~~~~~~~~~~~i~v~~l~~~~~-~~~~~~---~~~~l~-----------------~g~~dIvV~T~~ll~~~---- 720 (1151)
T 2eyq_A 666 QQHYDNFRDRFANWPVRIEMISRFRS-AKEQTQ---ILAEVA-----------------EGKIDILIGTHKLLQSD---- 720 (1151)
T ss_dssp HHHHHHHHHHSTTTTCCEEEESTTSC-HHHHHH---HHHHHH-----------------TTCCSEEEECTHHHHSC----
T ss_pred HHHHHHHHHHhhcCCCeEEEEeCCCC-HHHHHH---HHHHHh-----------------cCCCCEEEECHHHHhCC----
Confidence 99999999887653 3333332211 111111 111111 12578999999887542
Q ss_pred hhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhh
Q 006698 224 ELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302 (635)
Q Consensus 224 ~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~ 302 (635)
+....+++|||||||++. ......+..+ ...++++|||||.++....... .
T Consensus 721 ----~~~~~l~lvIiDEaH~~g---~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~---~------------------ 772 (1151)
T 2eyq_A 721 ----VKFKDLGLLIVDEEHRFG---VRHKERIKAMRANVDILTLTATPIPRTLNMAMS---G------------------ 772 (1151)
T ss_dssp ----CCCSSEEEEEEESGGGSC---HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHT---T------------------
T ss_pred ----ccccccceEEEechHhcC---hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHh---c------------------
Confidence 223457899999999973 3455566666 4467999999997543221100 0
Q ss_pred hhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCce--EEEEEeCCcHHHHHHHHHHhhhhhHH
Q 006698 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLR--HSVVILQPDEFQKRLCKAVEGVKSFV 380 (635)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~--~~~v~~~~s~~q~~~y~~~~~~~~~~ 380 (635)
+.. ...+ ..-|... ........++
T Consensus 773 -------------------------------~~~------~~~i-~~~~~~r~~i~~~~~~~~~---------------- 798 (1151)
T 2eyq_A 773 -------------------------------MRD------LSII-ATPPARRLAVKTFVREYDS---------------- 798 (1151)
T ss_dssp -------------------------------TSE------EEEC-CCCCCBCBCEEEEEEECCH----------------
T ss_pred -------------------------------CCC------ceEE-ecCCCCccccEEEEecCCH----------------
Confidence 000 0000 0001100 0000111110
Q ss_pred HHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc-CCCeEEEEcCChhHHHHHHHHHHhh
Q 006698 381 ELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS-TNEKVLVFSQYIEPLTLIMEQLRHR 459 (635)
Q Consensus 381 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~-~~~kviIFs~~~~~~~~l~~~L~~~ 459 (635)
......++... .+.+++|||+.+..++.+.+.|.+.
T Consensus 799 -------------------------------------------~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~ 835 (1151)
T 2eyq_A 799 -------------------------------------------MVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL 835 (1151)
T ss_dssp -------------------------------------------HHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHh
Confidence 11111222222 6889999999999999999999987
Q ss_pred hcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCC-CCChhhHHhhhhhhhhc
Q 006698 460 FNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDV-VWNPFVERQAISRAYRL 538 (635)
Q Consensus 460 ~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~-~wnp~~~~Qa~gR~~R~ 538 (635)
+ ++..+..+||+++..+|+++++.|++ ++++||| +|+++++|+|++++++||++++ +|++..+.|++||++|.
T Consensus 836 ~---p~~~v~~lhg~~~~~eR~~il~~F~~--g~~~VLV-aT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~ 909 (1151)
T 2eyq_A 836 V---PEARIAIGHGQMRERELERVMNDFHH--QRFNVLV-CTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 909 (1151)
T ss_dssp C---TTSCEEECCSSCCHHHHHHHHHHHHT--TSCCEEE-ESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBT
T ss_pred C---CCCeEEEEeCCCCHHHHHHHHHHHHc--CCCcEEE-ECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcC
Confidence 5 37889999999999999999999997 5677776 6999999999999999999998 69999999999999999
Q ss_pred CCcceEEEEEEEeCC
Q 006698 539 GQKRVVHVYHLITSE 553 (635)
Q Consensus 539 GQ~~~V~vy~li~~~ 553 (635)
|+.. ++|.++..+
T Consensus 910 g~~g--~~~ll~~~~ 922 (1151)
T 2eyq_A 910 HHQA--YAWLLTPHP 922 (1151)
T ss_dssp TBCE--EEEEEECCG
T ss_pred CCce--EEEEEECCc
Confidence 9654 445555543
No 36
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.95 E-value=5.1e-28 Score=235.02 Aligned_cols=199 Identities=15% Similarity=0.108 Sum_probs=149.2
Q ss_pred CCCceEEEEEeCCcHHHHHHHHHHhhh--------------------hhHHHHHHHHhhhcCCCCCCCccccccCccchH
Q 006698 350 LPGLRHSVVILQPDEFQKRLCKAVEGV--------------------KSFVELNYCVSLLSVHPSLLPQQFFESFDVDSA 409 (635)
Q Consensus 350 lp~~~~~~v~~~~s~~q~~~y~~~~~~--------------------~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~ 409 (635)
-|++.+.+++++||+.|+++|+.+... .......+.+|++|+||+++.............
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~~~~~~ 99 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKSLITRD 99 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSCSCSTT
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCccccccc
Confidence 488999999999999999999998531 123456778999999999985432211110011
Q ss_pred HHhhcccCccccchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHh
Q 006698 410 KLARLKLDPEAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVL 487 (635)
Q Consensus 410 ~l~~~~~~~~~s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F 487 (635)
..+.+ .+.|+|+..|..++... .++||+||||++.++|+|+++|... |+.+.+++|+... ++++.
T Consensus 100 ~~~~l---~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~-----~~~y~RlDG~~~~-~~~k~---- 166 (328)
T 3hgt_A 100 VPAHL---AENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGN-----KVHIKRYDGHSIK-SAAAA---- 166 (328)
T ss_dssp HHHHH---HHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTS-----SCEEEESSSCCC-----------
T ss_pred hhhHH---HHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcC-----CCceEeCCCCchh-hhhhc----
Confidence 11111 24799999999999887 8899999999999999999999986 9999999999543 32221
Q ss_pred cCCCCCcEEEEEccCCcccccc-----cccCCeEEEeCCCCChhhH-Hhhhhhhhhc--CCcceEEEEEEEeCCChHHHH
Q 006698 488 NDPSSQARIMLASTKACCEGIN-----LVGASRVVLLDVVWNPFVE-RQAISRAYRL--GQKRVVHVYHLITSETLEWDK 559 (635)
Q Consensus 488 ~~~~~~~~vll~st~~~~~Gln-----L~~a~~vi~~d~~wnp~~~-~Qa~gR~~R~--GQ~~~V~vy~li~~~tiEe~i 559 (635)
.++.+.++|+ |++||.|+| ++.|++||.||++|||... .||+.|+||+ ||+++|.||||++.+|+|+.+
T Consensus 167 --~~~~~~i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~ 243 (328)
T 3hgt_A 167 --NDFSCTVHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCR 243 (328)
T ss_dssp ---CCSEEEEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHH
T ss_pred --ccCCceEEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHH
Confidence 1255788886 778888886 8999999999999999998 9999999999 788999999999999999998
Q ss_pred HHHHH
Q 006698 560 LRRQA 564 (635)
Q Consensus 560 ~~~~~ 564 (635)
+..-.
T Consensus 244 l~~~~ 248 (328)
T 3hgt_A 244 LFFGK 248 (328)
T ss_dssp HHHHH
T ss_pred HHccC
Confidence 88633
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.94 E-value=3.3e-27 Score=261.63 Aligned_cols=310 Identities=15% Similarity=0.144 Sum_probs=199.5
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~ 146 (635)
-+|+|+|.+++..+...+..+ ...++++..+||+|||++++..+......+ .+++|+|| ..|..
T Consensus 367 f~lt~~Q~~ai~~I~~~l~~~-------------~~~~~Ll~a~TGSGKTlvall~il~~l~~g--~qvlvlaPtr~La~ 431 (780)
T 1gm5_A 367 FKLTNAQKRAHQEIRNDMISE-------------KPMNRLLQGDVGSGKTVVAQLAILDNYEAG--FQTAFMVPTSILAI 431 (780)
T ss_dssp SCCCHHHHHHHHHHHHHHHSS-------------SCCCCEEECCSSSSHHHHHHHHHHHHHHHT--SCEEEECSCHHHHH
T ss_pred CCCCHHHHHHHHHHHhhcccc-------------CCCcEEEEcCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCcHHHHH
Confidence 379999999999998765432 235889999999999999987776665543 57899999 57889
Q ss_pred HHHHHHHHhcC--CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchh
Q 006698 147 TWEEEFKKWGI--DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224 (635)
Q Consensus 147 qW~~E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~ 224 (635)
||.+++.+++. ++++..+++..... .. ........ ....+|+|+|+..+...
T Consensus 432 Q~~~~l~~~~~~~gi~v~~l~G~~~~~-~r---~~~~~~l~-----------------~g~~~IvVgT~~ll~~~----- 485 (780)
T 1gm5_A 432 QHYRRTVESFSKFNIHVALLIGATTPS-EK---EKIKSGLR-----------------NGQIDVVIGTHALIQED----- 485 (780)
T ss_dssp HHHHHHHHHHTCSSCCEEECCSSSCHH-HH---HHHHHHHH-----------------SSCCCEEEECTTHHHHC-----
T ss_pred HHHHHHHHHhhhcCceEEEEeCCCCHH-HH---HHHHHHHh-----------------cCCCCEEEECHHHHhhh-----
Confidence 99999999876 45555555432111 11 11111110 12478999999887542
Q ss_pred hhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhhh
Q 006698 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREI 303 (635)
Q Consensus 225 ~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~~ 303 (635)
+....+++||+||+|++.... ...+... ...++++|||||+.......+ ++.
T Consensus 486 ---~~~~~l~lVVIDEaHr~g~~q---r~~l~~~~~~~~vL~mSATp~p~tl~~~~-------------------~g~-- 538 (780)
T 1gm5_A 486 ---VHFKNLGLVIIDEQHRFGVKQ---REALMNKGKMVDTLVMSATPIPRSMALAF-------------------YGD-- 538 (780)
T ss_dssp ---CCCSCCCEEEEESCCCC--------CCCCSSSSCCCEEEEESSCCCHHHHHHH-------------------TCC--
T ss_pred ---hhccCCceEEecccchhhHHH---HHHHHHhCCCCCEEEEeCCCCHHHHHHHH-------------------hCC--
Confidence 234567999999999973221 1111111 457899999999653221100 000
Q ss_pred hHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHHHHH
Q 006698 304 SKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN 383 (635)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~~~~ 383 (635)
+ .. .+...+|+....+...-..
T Consensus 539 ------------------------------~-------~~-s~i~~~p~~r~~i~~~~~~-------------------- 560 (780)
T 1gm5_A 539 ------------------------------L-------DV-TVIDEMPPGRKEVQTMLVP-------------------- 560 (780)
T ss_dssp ------------------------------S-------SC-EEECCCCSSCCCCEECCCC--------------------
T ss_pred ------------------------------c-------ce-eeeeccCCCCcceEEEEec--------------------
Confidence 0 00 0001222211100000000
Q ss_pred HHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHh-c-CCCeEEEEcCChh--------HHHHHH
Q 006698 384 YCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL-S-TNEKVLVFSQYIE--------PLTLIM 453 (635)
Q Consensus 384 ~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~-~-~~~kviIFs~~~~--------~~~~l~ 453 (635)
..+...+.+.+.. . .+.+++|||+... .++.+.
T Consensus 561 -------------------------------------~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~ 603 (780)
T 1gm5_A 561 -------------------------------------MDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMY 603 (780)
T ss_dssp -------------------------------------SSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHH
T ss_pred -------------------------------------cchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHH
Confidence 0011122222222 2 6788999998653 356667
Q ss_pred HHHHh-hhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCC-CChhhHHhh
Q 006698 454 EQLRH-RFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVV-WNPFVERQA 531 (635)
Q Consensus 454 ~~L~~-~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~-wnp~~~~Qa 531 (635)
+.|.. .+ +++.+..+||+++.++|+.+++.|++ ++++||+ +|+++++|+|++++++||++|++ |+.+.+.|+
T Consensus 604 ~~L~~~~~---~~~~v~~lHG~m~~~eR~~v~~~F~~--G~~~ILV-aT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr 677 (780)
T 1gm5_A 604 EYLSKEVF---PEFKLGLMHGRLSQEEKDRVMLEFAE--GRYDILV-STTVIEVGIDVPRANVMVIENPERFGLAQLHQL 677 (780)
T ss_dssp HSGGGSCC------CBCCCCSSSCCSCSHHHHHHHTT--TSSSBCC-CSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHH
T ss_pred HHHHhhhc---CCCcEEEEeCCCCHHHHHHHHHHHHC--CCCeEEE-ECCCCCccccCCCCCEEEEeCCCCCCHHHHHHH
Confidence 77766 43 27889999999999999999999997 5577666 79999999999999999999998 478999999
Q ss_pred hhhhhhcCCcceEEE
Q 006698 532 ISRAYRLGQKRVVHV 546 (635)
Q Consensus 532 ~gR~~R~GQ~~~V~v 546 (635)
+||++|.|+...+.+
T Consensus 678 ~GRaGR~g~~g~~il 692 (780)
T 1gm5_A 678 RGRVGRGGQEAYCFL 692 (780)
T ss_dssp HHTSCCSSTTCEEEC
T ss_pred hcccCcCCCCCEEEE
Confidence 999999997655443
No 38
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-25 Score=259.53 Aligned_cols=377 Identities=13% Similarity=0.088 Sum_probs=216.6
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~ 146 (635)
.+|+|+|.+++..+.. +.++|++.+||+|||+++...+...+.. .+++||++| ..|..
T Consensus 183 f~ltp~Q~~AI~~i~~-------------------g~dvLV~ApTGSGKTlva~l~i~~~l~~--g~rvlvl~PtraLa~ 241 (1108)
T 3l9o_A 183 FTLDPFQDTAISCIDR-------------------GESVLVSAHTSAGKTVVAEYAIAQSLKN--KQRVIYTSPIKALSN 241 (1108)
T ss_dssp SCCCHHHHHHHHHHTT-------------------TCCEEEECCSSSHHHHHHHHHHHHHHHT--TCEEEEEESSHHHHH
T ss_pred CCCCHHHHHHHHHHHc-------------------CCCEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEcCcHHHHH
Confidence 4699999999998732 5789999999999999987777655543 457899999 78889
Q ss_pred HHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhh
Q 006698 147 TWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELS 226 (635)
Q Consensus 147 qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~ 226 (635)
||.+++.+++.. +..+.+.. . .....+|+|+|++.+........
T Consensus 242 Q~~~~l~~~~~~--VglltGd~-----~---------------------------~~~~~~IlV~Tpe~L~~~L~~~~-- 285 (1108)
T 3l9o_A 242 QKYRELLAEFGD--VGLMTGDI-----T---------------------------INPDAGCLVMTTEILRSMLYRGS-- 285 (1108)
T ss_dssp HHHHHHHHHTSS--EEEECSSC-----B---------------------------CCCSCSEEEEEHHHHHHHHHHCS--
T ss_pred HHHHHHHHHhCC--ccEEeCcc-----c---------------------------cCCCCCEEEeChHHHHHHHHcCc--
Confidence 999999998753 22222211 0 12357899999998887654321
Q ss_pred hhhccCCCEEEEeCCCcCCCcc--cHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhhh
Q 006698 227 GILLDLPGLFVFDEGHTPRNDD--TCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREI 303 (635)
Q Consensus 227 ~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~~ 303 (635)
.....+++|||||||++.... ......+..+ ...+.++||||+ .|. .++...+..+...... +
T Consensus 286 -~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSATi-pn~-~e~a~~l~~~~~~~~~-----------v 351 (1108)
T 3l9o_A 286 -EVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATI-PNA-MEFAEWICKIHSQPCH-----------I 351 (1108)
T ss_dssp -SHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECSC-SSC-HHHHHHHHHHTCSCEE-----------E
T ss_pred -cccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEEEEcCCC-CCH-HHHHHHHHhhcCCCeE-----------E
Confidence 112346899999999997642 2233334444 456789999993 333 3333222211100000 0
Q ss_pred hHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHHHHH
Q 006698 304 SKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELN 383 (635)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~~~~ 383 (635)
+.. .... .-+..++... +......+.-.........+.........
T Consensus 352 -----------i~~---~~rp-------~pl~~~~~~~---------~~~~~~~~vd~~~~~~~~~~~~~~~~l~~---- 397 (1108)
T 3l9o_A 352 -----------VYT---NFRP-------TPLQHYLFPA---------HGDGIYLVVDEKSTFREENFQKAMASISN---- 397 (1108)
T ss_dssp -----------EEE---CCCS-------SCEEEEEEET---------TSSCCEEEEETTTEECHHHHHHHHTTC------
T ss_pred -----------Eec---CCCc-------ccceEEEeec---------CCcceeeeeccccchhhhhHHHHHHHHHh----
Confidence 000 0000 0000000000 00000001001111111111111100000
Q ss_pred HHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhccc
Q 006698 384 YCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWR 463 (635)
Q Consensus 384 ~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~ 463 (635)
.....+......... ...............++..+...+....+.++|||+..+..++.+...|... +..
T Consensus 398 ----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~-~~~ 467 (1108)
T 3l9o_A 398 ----QIGDDPNSTDSRGKK-----GQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKL-DFN 467 (1108)
T ss_dssp ------------------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSH-HHH
T ss_pred ----hhccccccccccccc-----ccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhc-cCC
Confidence 000000000000000 0000000000001234444555555557789999999999999999888653 000
Q ss_pred C-----------------------------------CceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCccccc
Q 006698 464 E-----------------------------------GQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGI 508 (635)
Q Consensus 464 ~-----------------------------------g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~Gl 508 (635)
. ...+..++|++++.+|..+++.|++ |.++||+ +|+++++||
T Consensus 468 ~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~--G~ikVLV-AT~vla~GI 544 (1108)
T 3l9o_A 468 SDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQE--GFLKVLF-ATETFSIGL 544 (1108)
T ss_dssp CC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHH--TCCCEEE-EESCCCSCC
T ss_pred CHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhC--CCCeEEE-ECcHHhcCC
Confidence 0 0117889999999999999999997 6678777 699999999
Q ss_pred ccccCCeEEEeCCCCChh--------hHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHH
Q 006698 509 NLVGASRVVLLDVVWNPF--------VERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRR 562 (635)
Q Consensus 509 nL~~a~~vi~~d~~wnp~--------~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~ 562 (635)
|++++++||+++.+|++. .|.|++||++|.|+....++|.++..+..+..+.+.
T Consensus 545 DiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l 606 (1108)
T 3l9o_A 545 NMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 606 (1108)
T ss_dssp CC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHH
T ss_pred CCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHH
Confidence 999999999888877665 499999999999998899999998877544443333
No 39
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.94 E-value=5.8e-25 Score=247.13 Aligned_cols=326 Identities=16% Similarity=0.131 Sum_probs=214.4
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHH-HHHHhCCCCCcEEEeC-ccchH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQ-AYMKLHPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~-~~~~~~~~~~~LIv~P-~~l~~ 146 (635)
.|+|||.+++..++.. +++++++.+||+|||.++...+. .+... .+++++++| ..|..
T Consensus 23 ~l~~~Q~~~i~~~~~~------------------~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~raLa~ 82 (720)
T 2zj8_A 23 SFYPPQAEALKSGILE------------------GKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKALAE 82 (720)
T ss_dssp BCCHHHHHHHTTTGGG------------------TCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGGGHH
T ss_pred CCCHHHHHHHHHHhcC------------------CCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHHHHH
Confidence 6999999999863221 56899999999999999854443 33333 357899999 78999
Q ss_pred HHHHHHHHhcC-CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhh
Q 006698 147 TWEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDEL 225 (635)
Q Consensus 147 qW~~E~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~ 225 (635)
||.+++.++.+ ++++..+.+..... . .+....+|+++|++.+.......
T Consensus 83 q~~~~~~~l~~~g~~v~~~~G~~~~~--~--------------------------~~~~~~~Iiv~Tpe~l~~~~~~~-- 132 (720)
T 2zj8_A 83 EKFQEFQDWEKIGLRVAMATGDYDSK--D--------------------------EWLGKYDIIIATAEKFDSLLRHG-- 132 (720)
T ss_dssp HHHHHTGGGGGGTCCEEEECSCSSCC--C--------------------------GGGGGCSEEEECHHHHHHHHHHT--
T ss_pred HHHHHHHHHHhcCCEEEEecCCCCcc--c--------------------------cccCCCCEEEECHHHHHHHHHcC--
Confidence 99999976543 44554444421110 0 01246789999999987765431
Q ss_pred hhhhccCCCEEEEeCCCcCCCc--ccHHHHHHHhcc-cCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhh
Q 006698 226 SGILLDLPGLFVFDEGHTPRND--DTCMFKALSRIK-TRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGRE 302 (635)
Q Consensus 226 ~~~~~~~~~~vIvDEaH~~kn~--~s~~~~~l~~l~-~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~ 302 (635)
......+++||+||||.+... .......+..++ ..++++||||+-. +.++.. ++....+
T Consensus 133 -~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n--~~~~~~---~l~~~~~------------ 194 (720)
T 2zj8_A 133 -SSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGN--PEELAE---WLNAELI------------ 194 (720)
T ss_dssp -CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSC--HHHHHH---HTTEEEE------------
T ss_pred -hhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCC--HHHHHH---HhCCccc------------
Confidence 111234689999999998652 233333344443 5778999999732 333322 1111000
Q ss_pred hhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHHHH
Q 006698 303 ISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVEL 382 (635)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~~~ 382 (635)
. ...-|-.....+.....
T Consensus 195 -------------------------------------~------~~~rp~~l~~~~~~~~~------------------- 212 (720)
T 2zj8_A 195 -------------------------------------V------SDWRPVKLRRGVFYQGF------------------- 212 (720)
T ss_dssp -------------------------------------E------CCCCSSEEEEEEEETTE-------------------
T ss_pred -------------------------------------C------CCCCCCcceEEEEeCCe-------------------
Confidence 0 00001101111110000
Q ss_pred HHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcc
Q 006698 383 NYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNW 462 (635)
Q Consensus 383 ~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~ 462 (635)
. ..+. .. . .....+...+.+.+. ++.++|||++.+..++.+...|.+....
T Consensus 213 ------~-~~~~---~~--------~---------~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~ 263 (720)
T 2zj8_A 213 ------V-TWED---GS--------I---------DRFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKS 263 (720)
T ss_dssp ------E-EETT---SC--------E---------EECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGG
T ss_pred ------e-eccc---cc--------h---------hhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHH
Confidence 0 0000 00 0 001223444555554 6789999999999999888888764211
Q ss_pred -------------cC---------------CceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCC
Q 006698 463 -------------RE---------------GQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGAS 514 (635)
Q Consensus 463 -------------~~---------------g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~ 514 (635)
.. ...+..++|+++.++|..+.+.|++ +.++|++ +|.+++.|+|+++.+
T Consensus 264 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~--g~~~vlv-aT~~l~~Gvdip~~~ 340 (720)
T 2zj8_A 264 LLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRK--GIIKAVV-ATPTLSAGINTPAFR 340 (720)
T ss_dssp GSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT--TSSCEEE-ECSTTGGGCCCCBSE
T ss_pred hcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHC--CCCeEEE-ECcHhhccCCCCceE
Confidence 00 1248899999999999999999997 6678777 699999999999999
Q ss_pred eEEE----eC----CCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChH
Q 006698 515 RVVL----LD----VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556 (635)
Q Consensus 515 ~vi~----~d----~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiE 556 (635)
.||. || .|+++..+.|+.||++|.|+.+...+|.+++....+
T Consensus 341 ~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 341 VIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR 390 (720)
T ss_dssp EEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHH
T ss_pred EEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHH
Confidence 9998 77 689999999999999999998899999999887744
No 40
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.94 E-value=4.9e-25 Score=247.03 Aligned_cols=326 Identities=17% Similarity=0.152 Sum_probs=212.4
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLT 147 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~q 147 (635)
.|+|+|.+++..+.. +++++++.+||+|||.++...+...... .+++++++| ..|..|
T Consensus 25 ~l~~~Q~~~i~~i~~-------------------~~~~lv~apTGsGKT~~~~l~il~~~~~--~~~~l~i~P~r~La~q 83 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFS-------------------GKNLLLAMPTAAGKTLLAEMAMVREAIK--GGKSLYVVPLRALAGE 83 (702)
T ss_dssp CCCCCCHHHHHHHTT-------------------CSCEEEECSSHHHHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHH
T ss_pred CCCHHHHHHHHHHhC-------------------CCcEEEEcCCccHHHHHHHHHHHHHHHh--CCcEEEEeCcHHHHHH
Confidence 699999999998632 5699999999999999986666544432 458899999 668999
Q ss_pred HHHHHHHhcC-CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhh
Q 006698 148 WEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELS 226 (635)
Q Consensus 148 W~~E~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~ 226 (635)
|.++++++.+ +.++..+.|...... .+....+|+++|++.+.......
T Consensus 84 ~~~~~~~~~~~g~~v~~~~G~~~~~~----------------------------~~~~~~~Iiv~Tpe~l~~~l~~~--- 132 (702)
T 2p6r_A 84 KYESFKKWEKIGLRIGISTGDYESRD----------------------------EHLGDCDIIVTTSEKADSLIRNR--- 132 (702)
T ss_dssp HHHHHTTTTTTTCCEEEECSSCBCCS----------------------------SCSTTCSEEEEEHHHHHHHHHTT---
T ss_pred HHHHHHHHHhcCCEEEEEeCCCCcch----------------------------hhccCCCEEEECHHHHHHHHHcC---
Confidence 9999976543 344444333211100 01236789999999987766442
Q ss_pred hhhccCCCEEEEeCCCcCCCc--ccHHHHHHHhc----ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhh
Q 006698 227 GILLDLPGLFVFDEGHTPRND--DTCMFKALSRI----KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSG 300 (635)
Q Consensus 227 ~~~~~~~~~vIvDEaH~~kn~--~s~~~~~l~~l----~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~ 300 (635)
......+++||+||||.+... .......+..+ +..++++||||+- +..++.. ++....+.
T Consensus 133 ~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~--n~~~~~~---~l~~~~~~--------- 198 (702)
T 2p6r_A 133 ASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAP--NVTEIAE---WLDADYYV--------- 198 (702)
T ss_dssp CSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCT--THHHHHH---HTTCEEEE---------
T ss_pred hhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcC--CHHHHHH---HhCCCccc---------
Confidence 111345799999999998652 22222233333 4577899999973 1333322 22111000
Q ss_pred hhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHH
Q 006698 301 REISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFV 380 (635)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~ 380 (635)
. ..-|-.....+.....
T Consensus 199 ----------------------------------------~------~~r~~~l~~~~~~~~~----------------- 215 (702)
T 2p6r_A 199 ----------------------------------------S------DWRPVPLVEGVLCEGT----------------- 215 (702)
T ss_dssp ----------------------------------------C------CCCSSCEEEEEECSSE-----------------
T ss_pred ----------------------------------------C------CCCCccceEEEeeCCe-----------------
Confidence 0 0000000100000000
Q ss_pred HHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhh
Q 006698 381 ELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRF 460 (635)
Q Consensus 381 ~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~ 460 (635)
.. ..... . .. ...-.+...+.+.+. ++.++|||++.+..++.+...|...+
T Consensus 216 --------------~~---~~~~~---~---~~----~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~ 266 (702)
T 2p6r_A 216 --------------LE---LFDGA---F---ST----SRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAIT 266 (702)
T ss_dssp --------------EE---EEETT---E---EE----EEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred --------------ee---ccCcc---h---hh----hhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHH
Confidence 00 00000 0 00 000013444444444 67899999999999998888887542
Q ss_pred cc----c---------------------CCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCe
Q 006698 461 NW----R---------------------EGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515 (635)
Q Consensus 461 ~~----~---------------------~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~ 515 (635)
.. . -+..+..++|+++.++|..+.+.|.+ |..+|++ +|++++.|+|+++.+.
T Consensus 267 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~--g~~~vlv-aT~~l~~Gidip~~~~ 343 (702)
T 2p6r_A 267 AKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR--GNIKVVV-ATPTLAAGVNLPARRV 343 (702)
T ss_dssp HTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHT--TSCCEEE-ECSTTTSSSCCCBSEE
T ss_pred HhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHC--CCCeEEE-ECcHHhccCCCCceEE
Confidence 10 0 01246779999999999999999997 5677777 6999999999999999
Q ss_pred EEE----eC---CCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCCh
Q 006698 516 VVL----LD---VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555 (635)
Q Consensus 516 vi~----~d---~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~ti 555 (635)
||. || .++++..+.|+.||++|.|+.++..+|.++.+...
T Consensus 344 VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 344 IVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp EECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGH
T ss_pred EEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccH
Confidence 998 77 78999999999999999999889999999887653
No 41
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.93 E-value=5e-25 Score=247.78 Aligned_cols=334 Identities=16% Similarity=0.205 Sum_probs=210.8
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLT 147 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~q 147 (635)
.|+|+|.+++..++. .+++++++.+||+|||.++...+....... .+++++++| ..|..|
T Consensus 30 ~l~~~Q~~~i~~~~~------------------~~~~~lv~apTGsGKT~~~~l~il~~~~~~-~~~il~i~P~r~La~q 90 (715)
T 2va8_A 30 KLNPPQTEAVKKGLL------------------EGNRLLLTSPTGSGKTLIAEMGIISFLLKN-GGKAIYVTPLRALTNE 90 (715)
T ss_dssp BCCHHHHHHHHTTTT------------------TTCCEEEECCTTSCHHHHHHHHHHHHHHHS-CSEEEEECSCHHHHHH
T ss_pred CCCHHHHHHHHHHhc------------------CCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-CCeEEEEeCcHHHHHH
Confidence 699999999986322 267999999999999999976665443322 357899999 568899
Q ss_pred HHHHHHHhcC-CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhh
Q 006698 148 WEEEFKKWGI-DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELS 226 (635)
Q Consensus 148 W~~E~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~ 226 (635)
|.++++++.+ +.++..+.|...... .+....+|+++|++.+.......
T Consensus 91 ~~~~~~~~~~~g~~v~~~~G~~~~~~----------------------------~~~~~~~Iiv~Tpe~l~~~~~~~--- 139 (715)
T 2va8_A 91 KYLTFKDWELIGFKVAMTSGDYDTDD----------------------------AWLKNYDIIITTYEKLDSLWRHR--- 139 (715)
T ss_dssp HHHHHGGGGGGTCCEEECCSCSSSCC----------------------------GGGGGCSEEEECHHHHHHHHHHC---
T ss_pred HHHHHHHhhcCCCEEEEEeCCCCCch----------------------------hhcCCCCEEEEcHHHHHHHHhCC---
Confidence 9999966543 344444433211100 01236789999999887765441
Q ss_pred hhhccCCCEEEEeCCCcCCCc--ccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhhhh
Q 006698 227 GILLDLPGLFVFDEGHTPRND--DTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREIS 304 (635)
Q Consensus 227 ~~~~~~~~~vIvDEaH~~kn~--~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~~~ 304 (635)
......+++||+||||.+.+. .......+..++..++++|||||-. ..++.. ++....+..
T Consensus 140 ~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~ii~lSATl~n--~~~~~~---~l~~~~~~~------------ 202 (715)
T 2va8_A 140 PEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNLLALSATISN--YKQIAK---WLGAEPVAT------------ 202 (715)
T ss_dssp CGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSEEEEEESCCTT--HHHHHH---HHTCEEEEC------------
T ss_pred hhHhhccCEEEEechhhcCCcccchHHHHHHHhcccCcEEEEcCCCCC--HHHHHH---HhCCCccCC------------
Confidence 111335689999999998642 2223334445567889999999831 333322 211100000
Q ss_pred HhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHHHHHH
Q 006698 305 KAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVELNY 384 (635)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~~~~~ 384 (635)
..+ ..| ....+.......
T Consensus 203 ----------------------------~~r-------------~~~-l~~~~~~~~~~~-------------------- 220 (715)
T 2va8_A 203 ----------------------------NWR-------------PVP-LIEGVIYPERKK-------------------- 220 (715)
T ss_dssp ----------------------------CCC-------------SSC-EEEEEEEECSST--------------------
T ss_pred ----------------------------CCC-------------CCC-ceEEEEecCCcc--------------------
Confidence 000 001 000000000000
Q ss_pred HHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcc--
Q 006698 385 CVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNW-- 462 (635)
Q Consensus 385 ~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~-- 462 (635)
.......+. . . . ..+ .....+...+.+.+. .+.++|||++.+...+.+...|...+..
T Consensus 221 -~~~~~~~~~----~----~---~---~~~---~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~ 280 (715)
T 2va8_A 221 -KEYNVIFKD----N----T---T---KKV---HGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVS 280 (715)
T ss_dssp -TEEEEEETT----S----C---E---EEE---ESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSC
T ss_pred -cceeeecCc----c----h---h---hhc---ccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhcc
Confidence 000000000 0 0 0 000 001224444445443 6789999999999999999988865321
Q ss_pred c-----------------------------CCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccC
Q 006698 463 R-----------------------------EGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGA 513 (635)
Q Consensus 463 ~-----------------------------~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a 513 (635)
. -+..+..++|+++.++|..+.+.|.+ |..+|++ +|++++.|+|+++.
T Consensus 281 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~--g~~~vlv-aT~~l~~Gidip~~ 357 (715)
T 2va8_A 281 LDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQ--RKIKVIV-ATPTLAAGVNLPAR 357 (715)
T ss_dssp CCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT--TCSCEEE-ECGGGGGSSCCCBS
T ss_pred CChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHc--CCCeEEE-EChHHhcccCCCce
Confidence 0 01248889999999999999999997 5678777 69999999999999
Q ss_pred CeEEE----eC-------CCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCC
Q 006698 514 SRVVL----LD-------VVWNPFVERQAISRAYRLGQKRVVHVYHLITSET 554 (635)
Q Consensus 514 ~~vi~----~d-------~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~t 554 (635)
+.||. || .++++..+.|+.||++|.|+..+..+|.+++...
T Consensus 358 ~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 358 TVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp EEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred EEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 99998 99 8999999999999999999988889999987654
No 42
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.93 E-value=1.4e-24 Score=248.42 Aligned_cols=381 Identities=14% Similarity=0.074 Sum_probs=225.1
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~ 146 (635)
-+|+|+|.+++..+.. ++.++++.+||+|||+++...+...... ..++||++| ..|..
T Consensus 38 f~l~~~Q~~aI~~il~-------------------g~~vlv~apTGsGKTlv~~~~i~~~~~~--g~~vlvl~PtraLa~ 96 (997)
T 4a4z_A 38 FELDTFQKEAVYHLEQ-------------------GDSVFVAAHTSAGKTVVAEYAIAMAHRN--MTKTIYTSPIKALSN 96 (997)
T ss_dssp SCCCHHHHHHHHHHHT-------------------TCEEEEECCTTSCSHHHHHHHHHHHHHT--TCEEEEEESCGGGHH
T ss_pred CCCCHHHHHHHHHHHc-------------------CCCEEEEECCCCcHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHH
Confidence 3589999999988754 5689999999999998776666554432 356899999 88999
Q ss_pred HHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhh
Q 006698 147 TWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELS 226 (635)
Q Consensus 147 qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~ 226 (635)
||.+++.+++++..+..+.+... .....+++++|++.+.......
T Consensus 97 Q~~~~l~~~~~~~~v~~l~G~~~--------------------------------~~~~~~IlV~Tpe~L~~~l~~~--- 141 (997)
T 4a4z_A 97 QKFRDFKETFDDVNIGLITGDVQ--------------------------------INPDANCLIMTTEILRSMLYRG--- 141 (997)
T ss_dssp HHHHHHHTTC--CCEEEECSSCE--------------------------------ECTTSSEEEEEHHHHHHHHHHT---
T ss_pred HHHHHHHHHcCCCeEEEEeCCCc--------------------------------cCCCCCEEEECHHHHHHHHHhC---
Confidence 99999999876666655554221 1235689999999887655321
Q ss_pred hhhccCCCEEEEeCCCcCCCc--ccHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHHHHhhhhhh
Q 006698 227 GILLDLPGLFVFDEGHTPRND--DTCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRTVRKSGREI 303 (635)
Q Consensus 227 ~~~~~~~~~vIvDEaH~~kn~--~s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~~~~~~~~~ 303 (635)
......+++|||||||++.+. .......+..+ +..+.++|||||-. ..++...+.......
T Consensus 142 ~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~n--~~ef~~~l~~~~~~~-------------- 205 (997)
T 4a4z_A 142 ADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPN--TYEFANWIGRTKQKN-------------- 205 (997)
T ss_dssp CSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCTT--HHHHHHHHHHHHTCC--------------
T ss_pred chhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEcCCCCC--hHHHHHHHhcccCCc--------------
Confidence 122345689999999998663 33344555555 45678999999732 223322221110000
Q ss_pred hHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEE--------EeC-CcHHHHHHHHH--
Q 006698 304 SKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVV--------ILQ-PDEFQKRLCKA-- 372 (635)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v--------~~~-~s~~q~~~y~~-- 372 (635)
.++... ..-|...+..+ .+. ........|..
T Consensus 206 --------------------------------~~vi~~------~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (997)
T 4a4z_A 206 --------------------------------IYVIST------PKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHK 247 (997)
T ss_dssp --------------------------------EEEEEC------SSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHH
T ss_pred --------------------------------eEEEec------CCCCccceEEEecCCcchhcccchhhhhHHHHHHHH
Confidence 000000 00010011000 000 00000111111
Q ss_pred --HhhhhhHHHHHHH--Hhhhc-----CCCCCCCcc----------------ccccCccchHHHhhcccCccccchHHHH
Q 006698 373 --VEGVKSFVELNYC--VSLLS-----VHPSLLPQQ----------------FFESFDVDSAKLARLKLDPEAGIKTRFL 427 (635)
Q Consensus 373 --~~~~~~~~~~~~~--~~~~~-----~~p~l~~~~----------------~~~~~~~~~~~l~~~~~~~~~s~K~~~l 427 (635)
+............ .+... .....-... .......................+...+
T Consensus 248 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 327 (997)
T 4a4z_A 248 EILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEI 327 (997)
T ss_dssp HHHC-----------------------------------------------------------------CCCCTTHHHHH
T ss_pred HHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHH
Confidence 1000000000000 00000 000000000 0000000000000000111234567777
Q ss_pred HHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhccc-----------------------------------CCceEEEEe
Q 006698 428 LILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWR-----------------------------------EGQEVLYMD 472 (635)
Q Consensus 428 ~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~-----------------------------------~g~~~~~i~ 472 (635)
.+.+......++|||+..+..++.+...|... +.. .+..+..+|
T Consensus 328 i~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~-~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H 406 (997)
T 4a4z_A 328 VNYLRKRELLPMVVFVFSKKRCEEYADWLEGI-NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHH 406 (997)
T ss_dssp HHHHHHTTCCSEEEECSCHHHHHHHHHTTTTC-CCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEEC
T ss_pred HHHHHhCCCCCEEEEECCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeec
Confidence 88887777789999999999999998888653 000 012478899
Q ss_pred CCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCC---------ChhhHHhhhhhhhhcCCcce
Q 006698 473 GKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVW---------NPFVERQAISRAYRLGQKRV 543 (635)
Q Consensus 473 G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~w---------np~~~~Qa~gR~~R~GQ~~~ 543 (635)
|++++.+|+.+++.|++ |.++||+ +|.++++|||+++ ..||+++.++ ++..+.|+.||++|.|+...
T Consensus 407 ~gl~~~~R~~v~~~F~~--G~~kVLv-AT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~ 482 (997)
T 4a4z_A 407 GGLLPIVKELIEILFSK--GFIKVLF-ATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDST 482 (997)
T ss_dssp TTSCHHHHHHHHHHHHT--TCCSEEE-ECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSS
T ss_pred CCCCHHHHHHHHHHHHC--CCCcEEE-EchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcc
Confidence 99999999999999998 5677777 6999999999999 7777766655 99999999999999999888
Q ss_pred EEEEEEEeCCChHHHHHHHH
Q 006698 544 VHVYHLITSETLEWDKLRRQ 563 (635)
Q Consensus 544 V~vy~li~~~tiEe~i~~~~ 563 (635)
..++.+...+..+...+...
T Consensus 483 G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 483 GTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp EEEEEECCSSCCCHHHHHHH
T ss_pred eEEEEecCCCcchHHHHHHH
Confidence 88888887777777666544
No 43
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.92 E-value=7.8e-24 Score=240.71 Aligned_cols=361 Identities=14% Similarity=0.117 Sum_probs=203.8
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~ 146 (635)
..|||||.+|+..+++.+..|-. +......+++|++.+++|+|||++++.++..+.......++||||| ..|..
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~-----~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~ 344 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFT-----AKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDY 344 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHH-----HTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCH
T ss_pred ccCCHHHHHHHHHHHHHHHhccc-----ccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHH
Confidence 46999999999999886532100 0000012468999999999999999776633322233357899999 88999
Q ss_pred HHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhh
Q 006698 147 TWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELS 226 (635)
Q Consensus 147 qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~ 226 (635)
||.+++.+|.+.. + .+ +.........+. ....+|+++|++.+.........
T Consensus 345 Q~~~~f~~f~~~~-v---~~----~~s~~~l~~~L~--------------------~~~~~IiVtTiqkl~~~l~~~~~- 395 (1038)
T 2w00_A 345 QTMKEYQRFSPDS-V---NG----SENTAGLKRNLD--------------------KDDNKIIVTTIQKLNNLMKAESD- 395 (1038)
T ss_dssp HHHHHHHTTSTTC-S---SS----SCCCHHHHHHHH--------------------CSSCCEEEEEHHHHHHHHHHCCC-
T ss_pred HHHHHHHHhcccc-c---cc----ccCHHHHHHHhc--------------------CCCCCEEEEEHHHHHHHHhcccc-
Confidence 9999999987541 1 11 111111111010 13578999999999875432110
Q ss_pred hhhccCCCEEEEeCCCcCCCcccHHHHHH-HhcccCcEEEEecccCCCCh----hhHHHHHHhhhhhhhhhHHHHHhhhh
Q 006698 227 GILLDLPGLFVFDEGHTPRNDDTCMFKAL-SRIKTRRRIILSGTPFQNNF----QELENTLSLVRQEFGEVLRTVRKSGR 301 (635)
Q Consensus 227 ~~~~~~~~~vIvDEaH~~kn~~s~~~~~l-~~l~~~~~l~LTgTP~~n~~----~el~~ll~~l~p~~~~~~~~~~~~~~ 301 (635)
......+++||+||||+.... ..++.+ ..++...+++|||||....- .....+ |+.
T Consensus 396 ~~~~~~~~lvIiDEAHrs~~~--~~~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~-----------------FG~ 456 (1038)
T 2w00_A 396 LPVYNQQVVFIFDECHRSQFG--EAQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASV-----------------FGR 456 (1038)
T ss_dssp CGGGGSCEEEEEESCCTTHHH--HHHHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHH-----------------HCS
T ss_pred hhccccccEEEEEccchhcch--HHHHHHHHhCCcccEEEEeCCccccccchhhhHHHHH-----------------hCC
Confidence 012235789999999997532 233344 44577789999999975321 111111 111
Q ss_pred hhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHHHHHHhhhhhHHH
Q 006698 302 EISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRLCKAVEGVKSFVE 381 (635)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~y~~~~~~~~~~~ 381 (635)
.+.. +.....+.. .+ -+|.. +.+....+. ++.......
T Consensus 457 ~i~~------------------Y~l~~AI~d---g~-----------l~p~~---v~y~~v~~~----~~~~~~e~d--- 494 (1038)
T 2w00_A 457 ELHS------------------YVITDAIRD---EK-----------VLKFK---VDYNDVRPQ----FKSLETETD--- 494 (1038)
T ss_dssp EEEE------------------ECHHHHHHH---TS-----------SCCEE---EEECCCCGG----GHHHHTCCC---
T ss_pred eeEe------------------ecHHHHHhC---CC-----------cCCeE---EEEEeccch----hhhcccccc---
Confidence 0000 000000000 00 11111 001111110 000000000
Q ss_pred HHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHH-HHHHhc-----------CCCeEEEEcCChhHH
Q 006698 382 LNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLL-ILLELS-----------TNEKVLVFSQYIEPL 449 (635)
Q Consensus 382 ~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~-~~l~~~-----------~~~kviIFs~~~~~~ 449 (635)
......+. .-..+ ....++..+. .++... .+.++||||.++..+
T Consensus 495 -~~~~~~i~-~~~~l----------------------~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A 550 (1038)
T 2w00_A 495 -EKKLSAAE-NQQAF----------------------LHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAA 550 (1038)
T ss_dssp -HHHHHHTC-STTTT----------------------TCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHH
T ss_pred -HHHHHHHH-HHHHh----------------------cCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHH
Confidence 00000000 00000 0011222222 222211 346899999999999
Q ss_pred HHHHHHHHhhh-------cccCCceE-EEEeCC----------C----------CH------------------------
Q 006698 450 TLIMEQLRHRF-------NWREGQEV-LYMDGK----------Q----------DV------------------------ 477 (635)
Q Consensus 450 ~~l~~~L~~~~-------~~~~g~~~-~~i~G~----------~----------~~------------------------ 477 (635)
..+.+.|.+.. ....+.++ +.++|. + +.
T Consensus 551 ~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~ 630 (1038)
T 2w00_A 551 KAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTD 630 (1038)
T ss_dssp HHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSS
T ss_pred HHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhccccccc
Confidence 99999998763 11123444 455653 1 11
Q ss_pred -----HHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCc-c-eEEEEEEE
Q 006698 478 -----KKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQK-R-VVHVYHLI 550 (635)
Q Consensus 478 -----~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~-~-~V~vy~li 550 (635)
..|..++++|++ ++++||| +++...+|+|.+.+ .++++|.|-+...+.||+||+.|.+.. | ...|+.|+
T Consensus 631 ~~~~~~~R~~i~~~Fk~--g~i~ILI-vvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~ 706 (1038)
T 2w00_A 631 SNGFQNYYRDLAQRVKN--QDIDLLI-VVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFR 706 (1038)
T ss_dssp HHHHHHHHHHHHHHHHT--TSSSEEE-ESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESS
T ss_pred chhhhHHHHHHHHHHHc--CCCeEEE-EcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcc
Confidence 137888999997 5688877 59999999999999 677899999999999999999999864 4 57777776
Q ss_pred e
Q 006698 551 T 551 (635)
Q Consensus 551 ~ 551 (635)
.
T Consensus 707 ~ 707 (1038)
T 2w00_A 707 D 707 (1038)
T ss_dssp C
T ss_pred c
Confidence 4
No 44
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.91 E-value=3.9e-23 Score=238.50 Aligned_cols=321 Identities=14% Similarity=0.107 Sum_probs=212.3
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLT 147 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~q 147 (635)
+|.|+|.+++..++. ++.+|+..++|+|||+.++..+.... ....++|||+| ..|..|
T Consensus 78 ~pt~iQ~~ai~~il~-------------------g~dvlv~ApTGSGKTl~~l~~il~~~--~~~~~~Lil~PtreLa~Q 136 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQ-------------------GKSFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQ 136 (1104)
T ss_dssp CCCHHHHHHHHHHTT-------------------TCCEEECCSTTCCHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHH
T ss_pred CCCHHHHHHHHHHHc-------------------CCCEEEEeCCCCcHHHHHHHHHHHHH--hcCCeEEEEechHHHHHH
Confidence 789999999998754 56899999999999996666554444 34457899999 788899
Q ss_pred HHHHHHHhc-CCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhh
Q 006698 148 WEEEFKKWG-IDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELS 226 (635)
Q Consensus 148 W~~E~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~ 226 (635)
+.+++.++. .++++..+++...... .... ..... ....+|+|+|++.+.....
T Consensus 137 ~~~~l~~l~~~~i~v~~l~Gg~~~~e-r~~~---~~~l~-----------------~g~~~IlV~Tp~rL~~~l~----- 190 (1104)
T 4ddu_A 137 TLERLQKLADEKVKIFGFYSSMKKEE-KEKF---EKSFE-----------------EDDYHILVFSTQFVSKNRE----- 190 (1104)
T ss_dssp HHHHHHTTSCTTSCEEEECTTCCTTH-HHHH---HHHHH-----------------TSCCSEEEEEHHHHHHSHH-----
T ss_pred HHHHHHHhhCCCCeEEEEeCCCCHHH-HHHH---HHHHh-----------------CCCCCEEEECHHHHHHHHH-----
Confidence 999999975 2345555554322110 0111 11110 1237899999999876543
Q ss_pred hhhccCCCEEEEeCCCcCCCcc-------------cH-HHHHHHhc------------ccCcEEEEecccCCCChhhHHH
Q 006698 227 GILLDLPGLFVFDEGHTPRNDD-------------TC-MFKALSRI------------KTRRRIILSGTPFQNNFQELEN 280 (635)
Q Consensus 227 ~~~~~~~~~vIvDEaH~~kn~~-------------s~-~~~~l~~l------------~~~~~l~LTgTP~~n~~~el~~ 280 (635)
.+....+++||+||||.+.... .. ....+..+ .....+++||||......+.+.
T Consensus 191 ~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~ 270 (1104)
T 4ddu_A 191 KLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLF 270 (1104)
T ss_dssp HHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHH
T ss_pred hhcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHh
Confidence 2444578999999999864321 11 22333333 3457899999986655443110
Q ss_pred HHHhhhhhhhhhHHHHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEe
Q 006698 281 TLSLVRQEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVIL 360 (635)
Q Consensus 281 ll~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~ 360 (635)
+..+. +.... .....+......+.+
T Consensus 271 --------------------------------------------------~~~l~-i~v~~----~~~~~~~i~~~~~~~ 295 (1104)
T 4ddu_A 271 --------------------------------------------------RDLLN-FTVGR----LVSVARNITHVRISS 295 (1104)
T ss_dssp --------------------------------------------------HHHTC-CCCCB----CCCCCCCEEEEEESC
T ss_pred --------------------------------------------------hccee-EEecc----CCCCcCCceeEEEec
Confidence 00000 00000 000111111111100
Q ss_pred CCcHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEE
Q 006698 361 QPDEFQKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVL 440 (635)
Q Consensus 361 ~~s~~q~~~y~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kvi 440 (635)
.|...|.+++.. .+.++|
T Consensus 296 -------------------------------------------------------------~k~~~L~~ll~~-~~~~~L 313 (1104)
T 4ddu_A 296 -------------------------------------------------------------RSKEKLVELLEI-FRDGIL 313 (1104)
T ss_dssp -------------------------------------------------------------CCHHHHHHHHHH-HCSSEE
T ss_pred -------------------------------------------------------------CHHHHHHHHHHh-cCCCEE
Confidence 134445555554 357999
Q ss_pred EEcCChhHHHHHHHHHHhhhcccCCceEE-EEeCCCCHHHHHHHHHHhcCCCCCcEEEEEc---cCCccccccccc-CCe
Q 006698 441 VFSQYIEPLTLIMEQLRHRFNWREGQEVL-YMDGKQDVKKRQSSINVLNDPSSQARIMLAS---TKACCEGINLVG-ASR 515 (635)
Q Consensus 441 IFs~~~~~~~~l~~~L~~~~~~~~g~~~~-~i~G~~~~~~r~~~i~~F~~~~~~~~vll~s---t~~~~~GlnL~~-a~~ 515 (635)
||++....++.+...|... |+.+. .++|. |.+ ++.|++ |+.+|||++ |++++.|||+++ ++.
T Consensus 314 VF~~s~~~a~~l~~~L~~~-----g~~~~~~lhg~-----rr~-l~~F~~--G~~~VLVatas~TdvlarGIDip~~V~~ 380 (1104)
T 4ddu_A 314 IFAQTEEEGKELYEYLKRF-----KFNVGETWSEF-----EKN-FEDFKV--GKINILIGVQAYYGKLTRGVDLPERIKY 380 (1104)
T ss_dssp EEESSSHHHHHHHHHHHHT-----TCCEEESSSSH-----HHH-HHHHHH--TSCSEEEEETTTHHHHCCSCCCTTTCCE
T ss_pred EEECcHHHHHHHHHHHHhC-----CCCeeeEecCc-----HHH-HHHHHC--CCCCEEEEecCCCCeeEecCcCCCCCCE
Confidence 9999999999999999987 99998 88882 555 999997 667888853 999999999999 999
Q ss_pred EEEeCCCC------------------------------------------------------------------------
Q 006698 516 VVLLDVVW------------------------------------------------------------------------ 523 (635)
Q Consensus 516 vi~~d~~w------------------------------------------------------------------------ 523 (635)
||+||+|-
T Consensus 381 VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~p 460 (1104)
T 4ddu_A 381 VIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIP 460 (1104)
T ss_dssp EEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEE
T ss_pred EEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEec
Confidence 99999998
Q ss_pred ChhhHHhhhhhhhhcCCcc--eEEEEEEEeCCChHHHHHHHHHHhhhhh
Q 006698 524 NPFVERQAISRAYRLGQKR--VVHVYHLITSETLEWDKLRRQARKVWWS 570 (635)
Q Consensus 524 np~~~~Qa~gR~~R~GQ~~--~V~vy~li~~~tiEe~i~~~~~~K~~~~ 570 (635)
++..|.||.||++|.|... ....+.++ -|+.+++.+.++....
T Consensus 461 d~~tYihr~GRtgR~~~gg~~~Glsi~~~----~d~~~~~~l~~~~~~~ 505 (1104)
T 4ddu_A 461 DVYTYIQASGRSSRILNGVLVKGVSVIFE----EDEEIFESLKTRLLLI 505 (1104)
T ss_dssp CHHHHHHHHHTTCCEETTEECCEEEEEEC----CCHHHHHHHHHHHHHH
T ss_pred ChhhhhcccCchhcccCCCcccceEEEEE----ecHHHHHHHHHHHhhh
Confidence 6778999999999987543 22223333 3678888888887754
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.88 E-value=1.1e-21 Score=226.86 Aligned_cols=318 Identities=13% Similarity=0.100 Sum_probs=201.2
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLT 147 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~q 147 (635)
.+ |+|.+++..++. ++++|+..++|+|||+.++.++..+.. ...++|||+| ..|..|
T Consensus 57 ~p-~iQ~~ai~~il~-------------------g~dvlv~apTGSGKTl~~lp~l~~~~~--~~~~~lil~PtreLa~Q 114 (1054)
T 1gku_B 57 PR-AIQKMWAKRILR-------------------KESFAATAPTGVGKTSFGLAMSLFLAL--KGKRCYVIFPTSLLVIQ 114 (1054)
T ss_dssp CC-HHHHHHHHHHHT-------------------TCCEECCCCBTSCSHHHHHHHHHHHHT--TSCCEEEEESCHHHHHH
T ss_pred CH-HHHHHHHHHHHh-------------------CCCEEEEcCCCCCHHHHHHHHHHHHhh--cCCeEEEEeccHHHHHH
Confidence 37 999999998864 568999999999999855555544433 3457899999 778899
Q ss_pred HHHHHHHhcCCCc------ccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhc
Q 006698 148 WEEEFKKWGIDIP------FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVS 221 (635)
Q Consensus 148 W~~E~~~~~~~~~------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~ 221 (635)
+.+++.+++.... +..+.|.... .......... .. .+|+|+|++.+.....
T Consensus 115 ~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~----~~~~~~~~~l------------------~~-~~IlV~TP~~L~~~l~ 171 (1054)
T 1gku_B 115 AAETIRKYAEKAGVGTENLIGYYHGRIPK----REKENFMQNL------------------RN-FKIVITTTQFLSKHYR 171 (1054)
T ss_dssp HHHHHHHHHTTTCCSGGGSEEECCSSCCS----HHHHHHHHSG------------------GG-CSEEEEEHHHHHHCST
T ss_pred HHHHHHHHHhhcCCCccceEEEEeCCCCh----hhHHHHHhhc------------------cC-CCEEEEcHHHHHHHHH
Confidence 9999999876432 3333332111 0100001111 12 7899999999887553
Q ss_pred chhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhc------------ccCcEEEEecccCCCChhhHHHHHHhhhhhh
Q 006698 222 GDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRI------------KTRRRIILSGTPFQNNFQELENTLSLVRQEF 289 (635)
Q Consensus 222 ~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l------------~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~ 289 (635)
. ...+++||+||||++.+........+..+ .....+++|||+-.. .++...+ +
T Consensus 172 ~-------L~~l~~lViDEah~~l~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~--~~~~~~~--~---- 236 (1054)
T 1gku_B 172 E-------LGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK--KGKKAEL--F---- 236 (1054)
T ss_dssp T-------SCCCSEEEESCHHHHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC--CCTTHHH--H----
T ss_pred H-------hccCCEEEEeChhhhhhccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc--hhHHHHH--h----
Confidence 2 23678999999999876444444444333 234578999997543 2111000 0
Q ss_pred hhhHHHHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCCceEEEEEeCCcHHHHHH
Q 006698 290 GEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPGLRHSVVILQPDEFQKRL 369 (635)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~~~~~~v~~~~s~~q~~~ 369 (635)
..... +.. .... ...+......+ +
T Consensus 237 -----------------------------------------~~~~~-i~v--~~~~--~~~~~i~~~~~--~-------- 260 (1054)
T 1gku_B 237 -----------------------------------------RQLLN-FDI--GSSR--ITVRNVEDVAV--N-------- 260 (1054)
T ss_dssp -----------------------------------------HHHHC-CCC--SCCE--ECCCCEEEEEE--S--------
T ss_pred -----------------------------------------hcceE-EEc--cCcc--cCcCCceEEEe--c--------
Confidence 00000 000 0000 00111111110 0
Q ss_pred HHHHhhhhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhcCCCeEEEEcCChhHH
Q 006698 370 CKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELSTNEKVLVFSQYIEPL 449 (635)
Q Consensus 370 y~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~ 449 (635)
..|...|.+++... +.++||||+....+
T Consensus 261 ---------------------------------------------------~~k~~~L~~ll~~~-~~~~LVF~~t~~~a 288 (1054)
T 1gku_B 261 ---------------------------------------------------DESISTLSSILEKL-GTGGIIYARTGEEA 288 (1054)
T ss_dssp ---------------------------------------------------CCCTTTTHHHHTTS-CSCEEEEESSHHHH
T ss_pred ---------------------------------------------------hhHHHHHHHHHhhc-CCCEEEEEcCHHHH
Confidence 11333345555543 57899999999999
Q ss_pred HHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEc---cCCcccccccccC-CeEEEeCCC---
Q 006698 450 TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS---TKACCEGINLVGA-SRVVLLDVV--- 522 (635)
Q Consensus 450 ~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~s---t~~~~~GlnL~~a-~~vi~~d~~--- 522 (635)
+.+.+.|... +.+..++|++ ..+++.|++ |..+||+++ |+++++|||++++ +.||++|+|
T Consensus 289 ~~l~~~L~~~------~~v~~lhg~~-----~~~l~~F~~--G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~ 355 (1054)
T 1gku_B 289 EEIYESLKNK------FRIGIVTATK-----KGDYEKFVE--GEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFR 355 (1054)
T ss_dssp HHHHHTTTTS------SCEEECTTSS-----SHHHHHHHH--TSCSEEEEECC------CCSCCTTTCCEEEEESCCEEE
T ss_pred HHHHHHHhhc------cCeeEEeccH-----HHHHHHHHc--CCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCccc
Confidence 9999998763 6788999987 367899997 667888864 8999999999996 999999999
Q ss_pred --------------------------------------------------------------------CChhhHHhhhhh
Q 006698 523 --------------------------------------------------------------------WNPFVERQAISR 534 (635)
Q Consensus 523 --------------------------------------------------------------------wnp~~~~Qa~gR 534 (635)
.++..|.||+||
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GR 435 (1054)
T 1gku_B 356 VTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGR 435 (1054)
T ss_dssp EECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHT
T ss_pred ccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhch
Confidence 789999999999
Q ss_pred hhhcCCcceEEEEEEEeCCChHHHHHHHHHHhhhh
Q 006698 535 AYRLGQKRVVHVYHLITSETLEWDKLRRQARKVWW 569 (635)
Q Consensus 535 ~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~~~ 569 (635)
++|.|.......+.++..+ |..++..+.++.+.
T Consensus 436 agR~g~~g~~~g~~~~~~~--d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 436 TSRLFAGGLTKGASFLLED--DSELLSAFIERAKL 468 (1054)
T ss_dssp TCCEETTEECCEEEEEECS--CHHHHHHHHHHHHT
T ss_pred hhhccCCCCceEEEEEEec--CHHHHHHHHHHHhh
Confidence 9998876432233344444 56677777777665
No 46
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.85 E-value=3e-21 Score=202.74 Aligned_cols=99 Identities=21% Similarity=0.229 Sum_probs=84.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCe
Q 006698 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515 (635)
Q Consensus 436 ~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~ 515 (635)
+.++||||+.+..++.+.+.|... |+.+..++|+ +|+++++.|++ ++.+||+ +|+++++|+|++ ...
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~-----~~~v~~lhg~----~r~~~~~~f~~--g~~~vLV-aT~v~e~GiDip-~~~ 237 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA-----GKKVLYLNRK----TFESEYPKCKS--EKWDFVI-TTDISEMGANFK-ADR 237 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEESTT----THHHHTTHHHH--SCCSEEE-ECGGGGTSCCCC-CSE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc-----CCeEEEeCCc----cHHHHHHhhcC--CCCeEEE-ECchHHcCcccC-CcE
Confidence 558999999999999999999987 8999999997 67889999997 5577776 799999999999 444
Q ss_pred -----------------EEEeCCCCChhhHHhhhhhhhhcCCcc-eEEEE
Q 006698 516 -----------------VVLLDVVWNPFVERQAISRAYRLGQKR-VVHVY 547 (635)
Q Consensus 516 -----------------vi~~d~~wnp~~~~Qa~gR~~R~GQ~~-~V~vy 547 (635)
||+++.|.++..+.|++||++|.|... .+.+|
T Consensus 238 VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 238 VIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp EEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred EEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 577899999999999999999999654 44443
No 47
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.84 E-value=1.8e-20 Score=197.29 Aligned_cols=93 Identities=18% Similarity=0.200 Sum_probs=76.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCC
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGAS 514 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~ 514 (635)
.+.++||||+....++.+.+.|... |+.+..++| ++|.++++.|++ ++.+||+ +|++++.|+|++ ++
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~-----~~~v~~lhg----~~R~~~~~~F~~--g~~~vLV-aT~v~e~GiDip-v~ 242 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKA-----GKSVVVLNR----KTFEREYPTIKQ--KKPDFIL-ATDIAEMGANLC-VE 242 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHT-----TCCEEECCS----SSCC----------CCCSEEE-ESSSTTCCTTCC-CS
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHc-----CCCEEEecc----hhHHHHHhhhcC--CCceEEE-ECChhheeeccC-ce
Confidence 3679999999999999999999987 899999999 468889999997 5677776 799999999999 99
Q ss_pred eEEE-------------------eCCCCChhhHHhhhhhhhhcCC
Q 006698 515 RVVL-------------------LDVVWNPFVERQAISRAYRLGQ 540 (635)
Q Consensus 515 ~vi~-------------------~d~~wnp~~~~Qa~gR~~R~GQ 540 (635)
.||+ +|.|.++..+.|++||++|.|.
T Consensus 243 ~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~ 287 (440)
T 1yks_A 243 RVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPN 287 (440)
T ss_dssp EEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred EEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCC
Confidence 9986 8999999999999999999853
No 48
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.83 E-value=1.7e-20 Score=198.59 Aligned_cols=104 Identities=18% Similarity=0.144 Sum_probs=86.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCe
Q 006698 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515 (635)
Q Consensus 436 ~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~ 515 (635)
+.++|||++....++.+.+.|... |+.+..++|. +|..+++.|++ +..+||| +|++++.|+|+++ +.
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~-----g~~v~~lh~~----~R~~~~~~f~~--g~~~iLV-aT~v~~~GiDip~-~~ 256 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA-----GKKVIQLNRK----SYDTEYPKCKN--GDWDFVI-TTDISEMGANFGA-SR 256 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-----TCCEEEESTT----CCCCCGGGSSS--CCCSEEE-ESSCC---CCCSC-SE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc-----CCcEEecCHH----HHHHHHhhccC--CCceEEE-ECChHHhCeecCC-CE
Confidence 678999999999999999999987 9999999995 67788999987 5577766 7999999999998 99
Q ss_pred EEE--------------------eCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCC
Q 006698 516 VVL--------------------LDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553 (635)
Q Consensus 516 vi~--------------------~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~ 553 (635)
||. ||+|.++..+.||+||++|.|.. +-..|.|++..
T Consensus 257 VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~-~G~~~~~~~~~ 313 (459)
T 2z83_A 257 VIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ-VGDEYHYGGAT 313 (459)
T ss_dssp EEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC-CCEEEEECSCC
T ss_pred EEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCC-CCeEEEEEccc
Confidence 998 78999999999999999999963 33445566654
No 49
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.83 E-value=8.7e-20 Score=192.92 Aligned_cols=94 Identities=19% Similarity=0.166 Sum_probs=83.8
Q ss_pred CCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCe
Q 006698 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515 (635)
Q Consensus 436 ~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~ 515 (635)
+.++|||++.+..++.+.+.|... |+.+..++|.+ ++++++.|++ +..+||+ +|+++++|+|+++ +.
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~----~~~~~~~f~~--g~~~vLV-aT~v~~~GiDip~-~~ 254 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRKT----FDTEYPKTKL--TDWDFVV-TTDISEMGANFRA-GR 254 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECTTT----HHHHGGGGGS--SCCSEEE-ECGGGGSSCCCCC-SE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc-----CCeEEECCHHH----HHHHHHhhcc--CCceEEE-ECCHHHhCcCCCC-CE
Confidence 558999999999999999999987 89999999974 4678999997 5677776 7999999999999 99
Q ss_pred EEEeC--------------------CCCChhhHHhhhhhhhhcCCcc
Q 006698 516 VVLLD--------------------VVWNPFVERQAISRAYRLGQKR 542 (635)
Q Consensus 516 vi~~d--------------------~~wnp~~~~Qa~gR~~R~GQ~~ 542 (635)
||++| +|.++..+.||+||++|.|...
T Consensus 255 VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~ 301 (451)
T 2jlq_A 255 VIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE 301 (451)
T ss_dssp EEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred EEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCC
Confidence 99998 8999999999999999999733
No 50
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.83 E-value=4.3e-20 Score=202.43 Aligned_cols=92 Identities=18% Similarity=0.170 Sum_probs=83.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCC
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGAS 514 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~ 514 (635)
.+.++||||+.+..++.+.+.|... |+.+..++|. +|.++++.|++ ++.+||+ +|+++++|||++ ++
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~-----g~~v~~lHg~----eR~~v~~~F~~--g~~~VLV-aTdv~e~GIDip-v~ 475 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRA-----GKRVIQLNRK----SYDTEYPKCKN--GDWDFVI-TTDISEMGANFG-AS 475 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSS----SHHHHGGGGGT--CCCSEEE-ECGGGGTTCCCC-CS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC-----CCeEEEeChH----HHHHHHHHHHC--CCceEEE-ECchhhcceeeC-Cc
Confidence 4779999999999999999999987 9999999994 78999999997 5677776 699999999999 99
Q ss_pred eEEE--------------------eCCCCChhhHHhhhhhhhhcC
Q 006698 515 RVVL--------------------LDVVWNPFVERQAISRAYRLG 539 (635)
Q Consensus 515 ~vi~--------------------~d~~wnp~~~~Qa~gR~~R~G 539 (635)
+||+ ||+|.++..+.||+||++|.|
T Consensus 476 ~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~ 520 (673)
T 2wv9_A 476 RVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNP 520 (673)
T ss_dssp EEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCS
T ss_pred EEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCC
Confidence 9987 678899999999999999994
No 51
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.82 E-value=7.3e-19 Score=210.21 Aligned_cols=329 Identities=15% Similarity=0.142 Sum_probs=201.6
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLT 147 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~q 147 (635)
.+.|.|.+++.-+++. +.+++++.++|+|||+.+...+...+...+.+++|+|+| .+|..|
T Consensus 926 ~fnpiQ~q~~~~l~~~------------------~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q 987 (1724)
T 4f92_B 926 FFNPIQTQVFNTVYNS------------------DDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQ 987 (1724)
T ss_dssp BCCHHHHHHHHHHHSC------------------CSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHH
T ss_pred CCCHHHHHHHHHHhcC------------------CCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHH
Confidence 4789999999888642 568999999999999998776666666667778999999 888888
Q ss_pred HHHHHHH-hcC--CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchh
Q 006698 148 WEEEFKK-WGI--DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224 (635)
Q Consensus 148 W~~E~~~-~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~ 224 (635)
-.+++.+ +.+ +.++..+.|. ..... .+....+|+|+|++.+..+.+...
T Consensus 988 ~~~~~~~~f~~~~g~~V~~ltGd-----~~~~~-----------------------~~~~~~~IiV~TPEkld~llr~~~ 1039 (1724)
T 4f92_B 988 VYMDWYEKFQDRLNKKVVLLTGE-----TSTDL-----------------------KLLGKGNIIISTPEKWDILSRRWK 1039 (1724)
T ss_dssp HHHHHHHHHTTTSCCCEEECCSC-----HHHHH-----------------------HHHHHCSEEEECHHHHHHHHTTTT
T ss_pred HHHHHHHHhchhcCCEEEEEECC-----CCcch-----------------------hhcCCCCEEEECHHHHHHHHhCcc
Confidence 7777764 433 3344444331 11100 012356899999999876654321
Q ss_pred hhhhhccCCCEEEEeCCCcCCCcccHHHHH-HHhc--------ccCcEEEEecccCCCChhhHHHHHHhhhhhhhhhHHH
Q 006698 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKA-LSRI--------KTRRRIILSGTPFQNNFQELENTLSLVRQEFGEVLRT 295 (635)
Q Consensus 225 ~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~-l~~l--------~~~~~l~LTgTP~~n~~~el~~ll~~l~p~~~~~~~~ 295 (635)
... ......+||+||+|.+.......... +..+ +..+.++||||- .++.|+...+..-....
T Consensus 1040 ~~~-~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl--~N~~dla~WL~~~~~~~------ 1110 (1724)
T 4f92_B 1040 QRK-NVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSL--SNAKDVAHWLGCSATST------ 1110 (1724)
T ss_dssp TCH-HHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCB--TTHHHHHHHHTCCSTTE------
T ss_pred ccc-ccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCC--CCHHHHHHHhCCCCCCe------
Confidence 111 12356899999999987643322222 2222 345679999994 23555433221100000
Q ss_pred HHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCCC-ceEEEEEeCCcHHHHHHHHHHh
Q 006698 296 VRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLPG-LRHSVVILQPDEFQKRLCKAVE 374 (635)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp~-~~~~~v~~~~s~~q~~~y~~~~ 374 (635)
+... ...-|. ...++...+.......+.
T Consensus 1111 -----------------------------------------~~~~------~~~RPvpL~~~i~~~~~~~~~~~~~---- 1139 (1724)
T 4f92_B 1111 -----------------------------------------FNFH------PNVRPVPLELHIQGFNISHTQTRLL---- 1139 (1724)
T ss_dssp -----------------------------------------EECC------GGGCSSCEEEEEEEECCCSHHHHHH----
T ss_pred -----------------------------------------EEeC------CCCCCCCeEEEEEeccCCCchhhhh----
Confidence 0000 000111 122222222221111100
Q ss_pred hhhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHh-cCCCeEEEEcCChhHHHHHH
Q 006698 375 GVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLEL-STNEKVLVFSQYIEPLTLIM 453 (635)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~-~~~~kviIFs~~~~~~~~l~ 453 (635)
.....+...+.. .++.++|||+..+...+.+.
T Consensus 1140 -----------------------------------------------~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A 1172 (1724)
T 4f92_B 1140 -----------------------------------------------SMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTA 1172 (1724)
T ss_dssp -----------------------------------------------TTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHH
T ss_pred -----------------------------------------------hhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHH
Confidence 000111222222 26778999999887766655
Q ss_pred HHHHhhhccc-----------------------------CCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCc
Q 006698 454 EQLRHRFNWR-----------------------------EGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKAC 504 (635)
Q Consensus 454 ~~L~~~~~~~-----------------------------~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~ 504 (635)
..|....... -...+...||+++..+|..+.+.|.+ |.++|++ +|.++
T Consensus 1173 ~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~--G~i~VLv-aT~tl 1249 (1724)
T 4f92_B 1173 IDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSS--GAIQVVV-ASRSL 1249 (1724)
T ss_dssp HHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHH--TSBCEEE-EEGGG
T ss_pred HHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHC--CCCeEEE-EChHH
Confidence 5443221000 02347889999999999999999998 6788887 59999
Q ss_pred ccccccccCCeEEE----eC------CCCChhhHHhhhhhhhhcCCcceEEEEEEEeCC
Q 006698 505 CEGINLVGASRVVL----LD------VVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553 (635)
Q Consensus 505 ~~GlnL~~a~~vi~----~d------~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~ 553 (635)
+.|+|+++...||. || .+.++..+.|++||++|.|....-.++.++...
T Consensus 1250 A~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1250 CWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp SSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGG
T ss_pred HcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecch
Confidence 99999996555552 22 246889999999999999987777777666543
No 52
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.82 E-value=5.1e-19 Score=211.53 Aligned_cols=335 Identities=17% Similarity=0.161 Sum_probs=202.4
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh-C--------CCCCcEE
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL-H--------PRCRPVI 138 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~-~--------~~~~~LI 138 (635)
..|.|.|.+++..+++. +.+++++.+||+|||+.|...+...+.. . ...++|+
T Consensus 78 ~~ln~iQs~~~~~al~~------------------~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~ly 139 (1724)
T 4f92_B 78 KTLNRIQSKLYRAALET------------------DENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY 139 (1724)
T ss_dssp SBCCHHHHHTHHHHHTC------------------CCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEE
T ss_pred CCCCHHHHHHHHHHHcC------------------CCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEE
Confidence 36889999999887642 6699999999999999986555443332 1 2346799
Q ss_pred EeC-ccchHHHHHHHHHhcC--CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHH
Q 006698 139 IAP-RSMLLTWEEEFKKWGI--DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL 215 (635)
Q Consensus 139 v~P-~~l~~qW~~E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~ 215 (635)
|+| ++|..|-.+++.+.+. ++.|..+.|....... +....+|+|+|++.
T Consensus 140 iaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~----------------------------~~~~~~IlVtTpEk 191 (1724)
T 4f92_B 140 IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKE----------------------------EISATQIIVCTPEK 191 (1724)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT----------------------------TGGGCSEEEECHHH
T ss_pred ECCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc----------------------------ccCCCCEEEECHHH
Confidence 999 8888888888876543 3444444442111100 12467899999999
Q ss_pred HHHhhcchhhhhhhccCCCEEEEeCCCcCCCcccHHHH-----HHH---hc-ccCcEEEEecccCCCChhhHHHHHHhhh
Q 006698 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFK-----ALS---RI-KTRRRIILSGTPFQNNFQELENTLSLVR 286 (635)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~-----~l~---~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~ 286 (635)
+..+.+...... ......+||+||+|.+......... .++ .+ +..++++||||- .+++|+.. ||.
T Consensus 192 ld~llr~~~~~~-~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl--~N~~dvA~---wL~ 265 (1724)
T 4f92_B 192 WDIITRKGGERT-YTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATL--PNYEDVAT---FLR 265 (1724)
T ss_dssp HHHHTTSSTTHH-HHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSC--TTHHHHHH---HTT
T ss_pred HHHHHcCCccch-hhcCcCEEEEecchhcCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEeccc--CCHHHHHH---HhC
Confidence 877665422111 2234689999999988653221221 111 12 345689999994 23555433 221
Q ss_pred hhhhhhHHHHHhhhhhhhHhhhhhhhhhhhhccCcCcHHHHHHHHHhhcchhhhcccccccccCC-CceEEEEEeCCcHH
Q 006698 287 QEFGEVLRTVRKSGREISKAKHASLISSIGRCANHRDDEKLKELKEKIAPFVNVHKGTVLQESLP-GLRHSVVILQPDEF 365 (635)
Q Consensus 287 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~rr~~~~~~~~lp-~~~~~~v~~~~s~~ 365 (635)
..... .+ +... . ..-| +....++.+.....
T Consensus 266 ~~~~~-----------------------------------------~~--~~~~---~---~~RPvpL~~~~~~~~~~~~ 296 (1724)
T 4f92_B 266 VDPAK-----------------------------------------GL--FYFD---N---SFRPVPLEQTYVGITEKKA 296 (1724)
T ss_dssp CCHHH-----------------------------------------HE--EECC---G---GGCSSCEEEECCEECCCCH
T ss_pred CCCCC-----------------------------------------Ce--EEEC---C---CCccCccEEEEeccCCcch
Confidence 10000 00 0000 0 0001 11111111111110
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhhhcCCCCCCCccccccCccchHHHhhcccCccccchHHHHHHHHHhc-CCCeEEEEcC
Q 006698 366 QKRLCKAVEGVKSFVELNYCVSLLSVHPSLLPQQFFESFDVDSAKLARLKLDPEAGIKTRFLLILLELS-TNEKVLVFSQ 444 (635)
Q Consensus 366 q~~~y~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~l~~~~~~~~~s~K~~~l~~~l~~~-~~~kviIFs~ 444 (635)
.+. ++. -...+.+.+... .+.++|||++
T Consensus 297 ~~~-~~~--------------------------------------------------~~~~~~~~v~~~~~~~~~LVF~~ 325 (1724)
T 4f92_B 297 IKR-FQI--------------------------------------------------MNEIVYEKIMEHAGKNQVLVFVH 325 (1724)
T ss_dssp HHH-HHH--------------------------------------------------HHHHHHHHHTTCCSSCCEEEECS
T ss_pred hhh-hHH--------------------------------------------------HHHHHHHHHHHHhcCCcEEEECC
Confidence 000 000 001122222222 5678999999
Q ss_pred ChhHHHHHHHHHHhhhccc--------------------------------CCceEEEEeCCCCHHHHHHHHHHhcCCCC
Q 006698 445 YIEPLTLIMEQLRHRFNWR--------------------------------EGQEVLYMDGKQDVKKRQSSINVLNDPSS 492 (635)
Q Consensus 445 ~~~~~~~l~~~L~~~~~~~--------------------------------~g~~~~~i~G~~~~~~r~~~i~~F~~~~~ 492 (635)
++...+.+.+.|.+..... -...+...||+++.++|..+.+.|++ |
T Consensus 326 sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~--G 403 (1724)
T 4f92_B 326 SRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFAD--K 403 (1724)
T ss_dssp STTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHT--T
T ss_pred CHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHC--C
Confidence 8876666555554321000 02347789999999999999999998 6
Q ss_pred CcEEEEEccCCcccccccccCCeEEE----eCCC------CChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHH
Q 006698 493 QARIMLASTKACCEGINLVGASRVVL----LDVV------WNPFVERQAISRAYRLGQKRVVHVYHLITSETLEW 557 (635)
Q Consensus 493 ~~~vll~st~~~~~GlnL~~a~~vi~----~d~~------wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe 557 (635)
.++|++ +|.+++.|+||++...||. ||+. .++..+.|+.||++|.|....-.++.+...+..+.
T Consensus 404 ~i~vlv-aTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~ 477 (1724)
T 4f92_B 404 HIQVLV-STATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQY 477 (1724)
T ss_dssp CCCEEE-ECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCH
T ss_pred CCeEEE-EcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHH
Confidence 688887 6999999999997776663 5553 47899999999999999877777777777765543
No 53
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.82 E-value=2.9e-20 Score=184.47 Aligned_cols=164 Identities=12% Similarity=0.144 Sum_probs=118.3
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~ 146 (635)
.+|+|||.+++.+++.. ++++|+++||+|||+++++++......+ .+++||||| .+|+.
T Consensus 112 ~~l~~~Q~~ai~~~l~~-------------------~~~ll~~~tGsGKT~~~~~~~~~~~~~~-~~~~lil~Pt~~L~~ 171 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN-------------------RRRILNLPTSAGRSLIQALLARYYLENY-EGKILIIVPTTALTT 171 (282)
T ss_dssp CCCCHHHHHHHHHHHHH-------------------SEEEECCCTTSCHHHHHHHHHHHHHHHC-SSEEEEECSSHHHHH
T ss_pred cCccHHHHHHHHHHHhc-------------------CCeEEEcCCCCCcHHHHHHHHHHHHHcC-CCeEEEEECCHHHHH
Confidence 47999999999988763 4679999999999999988887665543 347899999 58999
Q ss_pred HHHHHHHHhcCC--CcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchh
Q 006698 147 TWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224 (635)
Q Consensus 147 qW~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~ 224 (635)
||.+++.++... ..+..+.+.. .... ......+|+|+||+.+.+...
T Consensus 172 q~~~~l~~~~~~~~~~~~~~~~~~----~~~~------------------------~~~~~~~I~v~T~~~l~~~~~--- 220 (282)
T 1rif_A 172 QMADDFVDYRLFSHAMIKKIGGGA----SKDD------------------------KYKNDAPVVVGTWQTVVKQPK--- 220 (282)
T ss_dssp HHHHHHHHHTSCCGGGEEECSTTC----SSTT------------------------CCCTTCSEEEECHHHHTTSCG---
T ss_pred HHHHHHHHhcccccceEEEEeCCC----cchh------------------------hhccCCcEEEEchHHHHhhHH---
Confidence 999999998542 2222222211 1000 012467899999988755321
Q ss_pred hhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhc-ccCcEEEEecccCCCChhhHHHHHHhhhhh
Q 006698 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRI-KTRRRIILSGTPFQNNFQELENTLSLVRQE 288 (635)
Q Consensus 225 ~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l-~~~~~l~LTgTP~~n~~~el~~ll~~l~p~ 288 (635)
.....+++||+||||++.+. .....+..+ +..++++|||||. |.-.+++.+..++.|-
T Consensus 221 ---~~~~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~~~l~lSATp~-~~~~~~~~l~~l~g~i 279 (282)
T 1rif_A 221 ---EWFSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFGLSGSLR-DGKANIMQYVGMFGEI 279 (282)
T ss_dssp ---GGGGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCEEEEECSSCC-TTSTTHHHHHHHHCEE
T ss_pred ---HHHhhCCEEEEECCccCCcc--cHHHHHHHhhcCCeEEEEeCCCC-CcchHHHHHHHhcCCc
Confidence 22345799999999999854 444555666 6889999999995 5567888888877663
No 54
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.82 E-value=2.3e-19 Score=200.51 Aligned_cols=125 Identities=15% Similarity=0.129 Sum_probs=100.5
Q ss_pred HHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhc------ccCCceEEEEeCCCCHHHHHHHHHHhcC---CCCCcEEE
Q 006698 427 LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFN------WREGQEVLYMDGKQDVKKRQSSINVLND---PSSQARIM 497 (635)
Q Consensus 427 l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~------~~~g~~~~~i~G~~~~~~r~~~i~~F~~---~~~~~~vl 497 (635)
+.++.....+.++|||++....++.+.+.|..... ...++.+..++|+++.++|..+++.|.. ..|..+|+
T Consensus 294 l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVl 373 (773)
T 2xau_A 294 VLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVV 373 (773)
T ss_dssp HHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEE
T ss_pred HHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEE
Confidence 34444444678999999999999999999875211 1138889999999999999999999981 12567777
Q ss_pred EEccCCcccccccccCCeEEEeCC------------------CCChhhHHhhhhhhhhcCCcceEEEEEEEeCCCh
Q 006698 498 LASTKACCEGINLVGASRVVLLDV------------------VWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555 (635)
Q Consensus 498 l~st~~~~~GlnL~~a~~vi~~d~------------------~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~ti 555 (635)
| +|++++.|||+++.+.||.++. |.+...+.||.||++|. ++-.+|+|+++...
T Consensus 374 V-AT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 374 I-STNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp E-ECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred E-eCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 6 7999999999999999999776 88999999999999997 45677888875544
No 55
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.82 E-value=7.6e-20 Score=199.25 Aligned_cols=121 Identities=18% Similarity=0.134 Sum_probs=94.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCC
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGAS 514 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~ 514 (635)
.+.++|||++....++.+.+.|... |+.+..++|. +|.++++.|++ ++.+||+ +|+++++|||+. ++
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~-----g~~v~~lhg~----~R~~~l~~F~~--g~~~VLV-aTdv~~rGiDi~-v~ 420 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKS-----GKRVIQLSRK----TFDTEYPKTKL--TDWDFVV-TTDISEMGANFR-AG 420 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTT----THHHHTTHHHH--SCCSEEE-ECGGGGTTCCCC-CS
T ss_pred CCCCEEEEECChhHHHHHHHHHHHc-----CCcEEEEChH----HHHHHHHhhcC--CCcEEEE-ECcHHHcCcccC-ce
Confidence 3668999999999999999999987 9999999984 78889999987 5577776 799999999996 88
Q ss_pred eE--------------------EEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCC-ChHHHHHHHHHHhhhh
Q 006698 515 RV--------------------VLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE-TLEWDKLRRQARKVWW 569 (635)
Q Consensus 515 ~v--------------------i~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~-tiEe~i~~~~~~K~~~ 569 (635)
+| |++|+|-++..+.||+||++|.|..+ -..|.|++.. .-|...+..++.+..+
T Consensus 421 ~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~-G~ai~l~~~~~~~d~~~l~~le~~i~l 495 (618)
T 2whx_A 421 RVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE-DDQYVFSGDPLKNDEDHAHWTEAKMLL 495 (618)
T ss_dssp EEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCC-CEEEEECSCCCCCCTTCHHHHHHHHHH
T ss_pred EEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCC-CeEEEEccCCchhhHHHHHHHHhHhcc
Confidence 87 77788899999999999999998643 2346666522 2233444445544444
No 56
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.82 E-value=1.5e-19 Score=164.67 Aligned_cols=136 Identities=18% Similarity=0.227 Sum_probs=117.6
Q ss_pred ccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEE
Q 006698 420 AGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499 (635)
Q Consensus 420 ~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~ 499 (635)
.+.|...|.+++...++.|+||||++...++.+.+.|... |+.+..++|+++..+|..+++.|++ +..+||+
T Consensus 15 ~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~--g~~~vLv- 86 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ-----NFPAIAIHRGMPQEERLSRYQQFKD--FQRRILV- 86 (172)
T ss_dssp GGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHT--TSCSEEE-
T ss_pred hHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc-----CCCEEEEECCCCHHHHHHHHHHHHC--CCCcEEE-
Confidence 4679999999999888889999999999999999999987 9999999999999999999999997 5577776
Q ss_pred ccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHh
Q 006698 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARK 566 (635)
Q Consensus 500 st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K 566 (635)
+|+++++|+|++++++||+||+|||+..+.||+||++|.|+...+ +.|+... -|...+..+++.
T Consensus 87 aT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~-~~~~~~~~l~~~ 150 (172)
T 1t5i_A 87 ATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA--ITFVSDE-NDAKILNDVQDR 150 (172)
T ss_dssp ESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEE--EEEECSH-HHHHHHHHHHHH
T ss_pred ECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEE--EEEEcCh-hHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999986544 4455432 244555555544
No 57
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.82 E-value=5.3e-20 Score=166.26 Aligned_cols=137 Identities=18% Similarity=0.190 Sum_probs=118.8
Q ss_pred cccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 006698 419 EAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498 (635)
Q Consensus 419 ~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll 498 (635)
..+.|...|.+++....+.|+||||++...++.+.+.|... |+.+..++|+++..+|..+++.|++ +..+||+
T Consensus 18 ~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~hg~~~~~~r~~~~~~f~~--g~~~vlv 90 (163)
T 2hjv_A 18 REENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDL-----GYPCDKIHGGMIQEDRFDVMNEFKR--GEYRYLV 90 (163)
T ss_dssp CGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHT--TSCSEEE
T ss_pred ChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHc--CCCeEEE
Confidence 34679999999998888889999999999999999999987 9999999999999999999999997 5577776
Q ss_pred EccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhh
Q 006698 499 ASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567 (635)
Q Consensus 499 ~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~ 567 (635)
+|+++++|+|+++++.||+||+|||+..+.||+||++|.||...+ +.|+... |...+..+++..
T Consensus 91 -~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~--~~~~~~~i~~~~ 154 (163)
T 2hjv_A 91 -ATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA--ISFVTAF--EKRFLADIEEYI 154 (163)
T ss_dssp -ECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEE--EEEECGG--GHHHHHHHHHHH
T ss_pred -ECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceE--EEEecHH--HHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999986554 4555544 555666555543
No 58
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.80 E-value=9.5e-20 Score=167.90 Aligned_cols=125 Identities=19% Similarity=0.311 Sum_probs=98.3
Q ss_pred cccchHHHHHHHHHhc-CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEE
Q 006698 419 EAGIKTRFLLILLELS-TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIM 497 (635)
Q Consensus 419 ~~s~K~~~l~~~l~~~-~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vl 497 (635)
..+.|...|.+++... ++.|+||||++...++.+...|... |+.+..++|+++..+|..+++.|++ +..+||
T Consensus 28 ~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~r~~~~~~f~~--g~~~vL 100 (185)
T 2jgn_A 28 EESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE-----GYACTSIHGDRSQRDREEALHQFRS--GKSPIL 100 (185)
T ss_dssp CGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT-----TCCEEEEC--------CHHHHHHHH--TSSSEE
T ss_pred CcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc-----CCceEEEeCCCCHHHHHHHHHHHHc--CCCeEE
Confidence 3567999999999987 7889999999999999999999987 9999999999999999999999997 557776
Q ss_pred EEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCC
Q 006698 498 LASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553 (635)
Q Consensus 498 l~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~ 553 (635)
+ +|+++++|+|++.++.||+||+|||+..+.||+||++|.|+... ++.|++..
T Consensus 101 v-aT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~--~~~~~~~~ 153 (185)
T 2jgn_A 101 V-ATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL--ATSFFNER 153 (185)
T ss_dssp E-EEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEE--EEEEECGG
T ss_pred E-EcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcE--EEEEEchh
Confidence 6 69999999999999999999999999999999999999997644 45566654
No 59
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.80 E-value=5e-19 Score=193.28 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=95.7
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEE
Q 006698 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVV 517 (635)
Q Consensus 438 kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi 517 (635)
..|||+.....++.+.+.|... |+.+..++|++++++|..+++.|+++++..+|++ +|++++.|||+ .+++||
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~-----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLV-ATdi~e~GlDi-~v~~VI 394 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIR-----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILV-ATDAIGMGLNL-SIRRII 394 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT-----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEE-ECGGGGSSCCC-CBSEEE
T ss_pred CCEEEEcCHHHHHHHHHHHHhc-----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEE-eCcHHHCCcCc-CccEEE
Confidence 3478899999999999999986 8999999999999999999999998556677777 69999999999 999999
Q ss_pred EeCC--------------CCChhhHHhhhhhhhhcCCc-ceEEEEEEEeC
Q 006698 518 LLDV--------------VWNPFVERQAISRAYRLGQK-RVVHVYHLITS 552 (635)
Q Consensus 518 ~~d~--------------~wnp~~~~Qa~gR~~R~GQ~-~~V~vy~li~~ 552 (635)
++++ |++++.+.||.||++|.|+. ....+|.+..+
T Consensus 395 ~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 395 FYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp ESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred ECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 9999 88999999999999999987 35777777544
No 60
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.78 E-value=8.8e-19 Score=158.66 Aligned_cols=125 Identities=21% Similarity=0.257 Sum_probs=108.3
Q ss_pred chHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEcc
Q 006698 422 IKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAST 501 (635)
Q Consensus 422 ~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st 501 (635)
.|...|.+++...++.|+|||+++...++.+...|... |+.+..++|+++..+|..+++.|++ +..+||+ +|
T Consensus 16 ~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv-~T 87 (165)
T 1fuk_A 16 YKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND-----KFTVSAIYSDLPQQERDTIMKEFRS--GSSRILI-ST 87 (165)
T ss_dssp GHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHT--TSCSEEE-EE
T ss_pred hHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHc--CCCEEEE-Ec
Confidence 49999999999888899999999999999999999987 9999999999999999999999997 5577776 69
Q ss_pred CCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChH
Q 006698 502 KACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556 (635)
Q Consensus 502 ~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiE 556 (635)
+++++|+|+++++.||+||+||++..+.||+||++|.|+... ++.|++.+..+
T Consensus 88 ~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~--~~~~~~~~~~~ 140 (165)
T 1fuk_A 88 DLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV--AINFVTNEDVG 140 (165)
T ss_dssp GGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CE--EEEEEETTTHH
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEEcchHHH
Confidence 999999999999999999999999999999999999997654 45677766543
No 61
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.78 E-value=7.3e-18 Score=183.31 Aligned_cols=112 Identities=19% Similarity=0.162 Sum_probs=93.7
Q ss_pred cchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 006698 421 GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498 (635)
Q Consensus 421 s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll 498 (635)
..|..++.+.+... .+.++||||+++...+.|...|... |+++..++|+....+|..+...|+. + .|+|
T Consensus 415 ~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~-----gi~~~vLhg~~~~rEr~ii~~ag~~--g--~VlI 485 (844)
T 1tf5_A 415 EGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNK-----GIPHQVLNAKNHEREAQIIEEAGQK--G--AVTI 485 (844)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTT-----TCCCEEECSSCHHHHHHHHTTTTST--T--CEEE
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC-----CCCEEEeeCCccHHHHHHHHHcCCC--C--eEEE
Confidence 34777777777653 6789999999999999999999997 9999999999876666544445543 3 4555
Q ss_pred EccCCcccccccc--------cCCeEEEeCCCCChhhHHhhhhhhhhcCCcc
Q 006698 499 ASTKACCEGINLV--------GASRVVLLDVVWNPFVERQAISRAYRLGQKR 542 (635)
Q Consensus 499 ~st~~~~~GlnL~--------~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~ 542 (635)
+|+++|.|+|+. +..+||++|.|-++..|.|++||++|.|.+=
T Consensus 486 -ATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G 536 (844)
T 1tf5_A 486 -ATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPG 536 (844)
T ss_dssp -EETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCE
T ss_pred -eCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCC
Confidence 799999999998 7889999999999999999999999999653
No 62
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.78 E-value=5.3e-19 Score=163.55 Aligned_cols=123 Identities=20% Similarity=0.295 Sum_probs=106.5
Q ss_pred ccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEE
Q 006698 420 AGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499 (635)
Q Consensus 420 ~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~ 499 (635)
...|+..|.+++... +.|+||||++...++.+.+.|... |+.+..++|+++.++|..+++.|++ ++.+||+
T Consensus 39 ~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~-----g~~~~~lhg~~~~~~R~~~l~~F~~--g~~~vLv- 109 (191)
T 2p6n_A 39 EEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLK-----GVEAVAIHGGKDQEERTKAIEAFRE--GKKDVLV- 109 (191)
T ss_dssp GGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHH-----TCCEEEECTTSCHHHHHHHHHHHHH--TSCSEEE-
T ss_pred hHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhc--CCCEEEE-
Confidence 457999999988864 458999999999999999999987 9999999999999999999999997 5577766
Q ss_pred ccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCC
Q 006698 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553 (635)
Q Consensus 500 st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~ 553 (635)
+|+++++|+|+++++.||+||+|||+..+.||+||++|.|++..+ +.|++..
T Consensus 110 aT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~--i~l~~~~ 161 (191)
T 2p6n_A 110 ATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIA--TTFINKA 161 (191)
T ss_dssp ECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEE--EEEECTT
T ss_pred EcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEE--EEEEcCc
Confidence 699999999999999999999999999999999999999986544 4566654
No 63
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=2.6e-18 Score=157.23 Aligned_cols=135 Identities=20% Similarity=0.299 Sum_probs=112.5
Q ss_pred cchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEc
Q 006698 421 GIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500 (635)
Q Consensus 421 s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~s 500 (635)
..|...|.+++...++.|+||||++...++.+...|... |+.+..++|+++..+|..+++.|++ +..+||+ +
T Consensus 19 ~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~R~~~~~~f~~--g~~~vLv-a 90 (175)
T 2rb4_A 19 KDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD-----GHQVSLLSGELTVEQRASIIQRFRD--GKEKVLI-T 90 (175)
T ss_dssp HHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECSSCCHHHHHHHHHHHHT--TSCSEEE-E
T ss_pred HhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHHc--CCCeEEE-E
Confidence 348999999998888889999999999999999999987 9999999999999999999999997 5577766 6
Q ss_pred cCCcccccccccCCeEEEeCCC------CChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhh
Q 006698 501 TKACCEGINLVGASRVVLLDVV------WNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567 (635)
Q Consensus 501 t~~~~~GlnL~~a~~vi~~d~~------wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~ 567 (635)
|+++++|+|++.+++||+||+| +++..+.||+||++|.|+. ..++.|+..+. ...+..+.++.
T Consensus 91 T~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~--~~~~~~i~~~~ 159 (175)
T 2rb4_A 91 TNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE--LPSLMKIQDHF 159 (175)
T ss_dssp CCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG--HHHHHHHHHHH
T ss_pred ecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch--HHHHHHHHHHh
Confidence 9999999999999999999999 6778999999999999954 55677777665 34455555543
No 64
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.77 E-value=6.4e-18 Score=182.22 Aligned_cols=102 Identities=17% Similarity=0.176 Sum_probs=84.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCC
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGAS 514 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~ 514 (635)
.+.++|||++.+..++.+.+.|.+. |+.+..++|++++++ |.+ ++.+||+ +|++++.|||+. ++
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~-----g~~v~~lHG~l~q~e-------r~~--~~~~VLV-ATdVaerGIDId-V~ 458 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL-----GINAVAYYRGLDVSV-------IPT--IGDVVVV-ATDALMTGYTGD-FD 458 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT-----TCCEEEECTTSCGGG-------SCS--SSCEEEE-ECTTHHHHCCCC-BS
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC-----CCcEEEecCCCCHHH-------HHh--CCCcEEE-ECChHHccCCCC-Cc
Confidence 5789999999999999999999987 999999999998764 333 3346666 799999999986 99
Q ss_pred eEE----------EeC-----------CCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChH
Q 006698 515 RVV----------LLD-----------VVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLE 556 (635)
Q Consensus 515 ~vi----------~~d-----------~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiE 556 (635)
.|| +|| .|-++..+.||+||++| |..- . |.|++++..+
T Consensus 459 ~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G--~-i~lvt~~e~~ 517 (666)
T 3o8b_A 459 SVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRG--I-YRFVTPGERP 517 (666)
T ss_dssp EEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE--E-EEESCCCCBC
T ss_pred EEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCC--E-EEEEecchhh
Confidence 888 567 78899999999999999 6542 3 7888876543
No 65
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.77 E-value=2.5e-18 Score=165.16 Aligned_cols=141 Identities=16% Similarity=0.120 Sum_probs=102.6
Q ss_pred HhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCc-cch
Q 006698 67 RKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPR-SML 145 (635)
Q Consensus 67 ~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~ 145 (635)
...|+|||.+++..+++ .++++++++||+|||.++++++... ..++|||||. .|+
T Consensus 91 ~~~l~~~Q~~ai~~~~~-------------------~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv~P~~~L~ 146 (237)
T 2fz4_A 91 EISLRDYQEKALERWLV-------------------DKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALA 146 (237)
T ss_dssp CCCCCHHHHHHHHHHTT-------------------TSEEEEEESSSTTHHHHHHHHHHHS-----CSCEEEEESSHHHH
T ss_pred CCCcCHHHHHHHHHHHh-------------------CCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEeCCHHHH
Confidence 34799999999998743 3469999999999999998887543 4678999995 888
Q ss_pred HHHHHHHHHhcCCCc-ccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchh
Q 006698 146 LTWEEEFKKWGIDIP-FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224 (635)
Q Consensus 146 ~qW~~E~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~ 224 (635)
.||.+++.+| +.+ +..+.+.. ....+|+|+||+.+.....
T Consensus 147 ~q~~~~~~~~--~~~~v~~~~g~~----------------------------------~~~~~i~v~T~~~l~~~~~--- 187 (237)
T 2fz4_A 147 EQWKERLGIF--GEEYVGEFSGRI----------------------------------KELKPLTVSTYDSAYVNAE--- 187 (237)
T ss_dssp HHHHHHHGGG--CGGGEEEESSSC----------------------------------BCCCSEEEEEHHHHHHTHH---
T ss_pred HHHHHHHHhC--CCCeEEEEeCCC----------------------------------CCcCCEEEEeHHHHHhhHH---
Confidence 9999999985 233 33333211 1245799999998765432
Q ss_pred hhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCCh
Q 006698 225 LSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNF 275 (635)
Q Consensus 225 ~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~ 275 (635)
.+...|++|||||||++.+.. ..+.+..++..++++|||||..++-
T Consensus 188 ---~~~~~~~llIiDEaH~l~~~~--~~~i~~~~~~~~~l~LSATp~r~D~ 233 (237)
T 2fz4_A 188 ---KLGNRFMLLIFDEVHHLPAES--YVQIAQMSIAPFRLGLTATFEREDG 233 (237)
T ss_dssp ---HHTTTCSEEEEECSSCCCTTT--HHHHHHTCCCSEEEEEEESCC----
T ss_pred ---HhcccCCEEEEECCccCCChH--HHHHHHhccCCEEEEEecCCCCCCC
Confidence 223458999999999997653 3344555688899999999987653
No 66
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.77 E-value=4.3e-18 Score=160.59 Aligned_cols=136 Identities=17% Similarity=0.229 Sum_probs=117.6
Q ss_pred ccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEE
Q 006698 420 AGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499 (635)
Q Consensus 420 ~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~ 499 (635)
.+.|+..|.+++....+.++||||++...++.+.+.|... |+.+..++|+++..+|..+++.|++ +..+|++
T Consensus 15 ~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~r~~~~~~f~~--g~~~vlv- 86 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDLSQGERERVLGAFRQ--GEVRVLV- 86 (212)
T ss_dssp TTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH-----TCCEEEECSSSCHHHHHHHHHHHHS--SSCCEEE-
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHHHC--CCCeEEE-
Confidence 4679999999999888899999999999999999999987 9999999999999999999999997 5677766
Q ss_pred ccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhh
Q 006698 500 STKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567 (635)
Q Consensus 500 st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~ 567 (635)
+|+++++|+|++++++||+||+||++..+.||+||++|.|+.. .++.|++.. |...+..++++.
T Consensus 87 aT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~--~~~~~~~i~~~~ 150 (212)
T 3eaq_A 87 ATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR--ERRDVEALERAV 150 (212)
T ss_dssp ECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG--GHHHHHHHHHHH
T ss_pred ecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh--HHHHHHHHHHHh
Confidence 6999999999999999999999999999999999999999764 455666654 455555555543
No 67
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.59 E-value=1.2e-19 Score=165.15 Aligned_cols=123 Identities=24% Similarity=0.354 Sum_probs=109.6
Q ss_pred cchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEc
Q 006698 421 GIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500 (635)
Q Consensus 421 s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~s 500 (635)
+.|...|.+++....+.|+||||++...++.+.+.|... |+.+..++|+++..+|..+++.|++ +..+||+ +
T Consensus 15 ~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~r~~~~~~f~~--g~~~vLv-a 86 (170)
T 2yjt_D 15 EHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREA-----GINNCYLEGEMVQGKRNEAIKRLTE--GRVNVLV-A 86 (170)
Confidence 568888999888778889999999999999999999987 9999999999999999999999997 5567666 7
Q ss_pred cCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCC
Q 006698 501 TKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSE 553 (635)
Q Consensus 501 t~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~ 553 (635)
|+++++|+|++++++||+||+|||+..+.||+||++|.||...+ +.|+...
T Consensus 87 T~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~ 137 (170)
T 2yjt_D 87 TDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTA--ISLVEAH 137 (170)
Confidence 99999999999999999999999999999999999999986655 3444443
No 68
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.74 E-value=1.1e-16 Score=173.49 Aligned_cols=111 Identities=15% Similarity=0.141 Sum_probs=95.4
Q ss_pred cchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 006698 421 GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498 (635)
Q Consensus 421 s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll 498 (635)
..|..++.+.+... .+.+|||||.++...+.|...|... |+++..++|+....++..+.+.|+. | .|+|
T Consensus 424 ~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~-----gi~~~vLnak~~~rEa~iia~agr~--G--~VtI 494 (853)
T 2fsf_A 424 AEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKA-----GIKHNVLNAKFHANEAAIVAQAGYP--A--AVTI 494 (853)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHT-----TCCCEECCTTCHHHHHHHHHTTTST--T--CEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHC-----CCCEEEecCChhHHHHHHHHhcCCC--C--eEEE
Confidence 45888888888653 7889999999999999999999997 9999999999876666666677775 3 3555
Q ss_pred EccCCcccccccccC-------------------------------------CeEEEeCCCCChhhHHhhhhhhhhcCCc
Q 006698 499 ASTKACCEGINLVGA-------------------------------------SRVVLLDVVWNPFVERQAISRAYRLGQK 541 (635)
Q Consensus 499 ~st~~~~~GlnL~~a-------------------------------------~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~ 541 (635)
+|+.+|.|+|+... .+||.+|.|-++..+.|++||++|.|.+
T Consensus 495 -ATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~ 573 (853)
T 2fsf_A 495 -ATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDA 573 (853)
T ss_dssp -EESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCC
T ss_pred -ecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCC
Confidence 79999999999853 5899999999999999999999999965
No 69
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.73 E-value=2e-16 Score=171.72 Aligned_cols=111 Identities=14% Similarity=0.061 Sum_probs=92.8
Q ss_pred cchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 006698 421 GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498 (635)
Q Consensus 421 s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll 498 (635)
..|..++.+.+... .+.+|||||.++...+.|.+.|.+. |+++..++|+....++..+.+.|+. + .|+|
T Consensus 443 ~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~-----Gi~~~vLnak~~~rEa~iia~agr~--G--~VtI 513 (922)
T 1nkt_A 443 EAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKR-----RIPHNVLNAKYHEQEATIIAVAGRR--G--GVTV 513 (922)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHT-----TCCCEEECSSCHHHHHHHHHTTTST--T--CEEE
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC-----CCCEEEecCChhHHHHHHHHhcCCC--C--eEEE
Confidence 34777777777554 7889999999999999999999997 9999999999765555555566665 3 3555
Q ss_pred EccCCcccccccccC----------------------------------------------------CeEEEeCCCCChh
Q 006698 499 ASTKACCEGINLVGA----------------------------------------------------SRVVLLDVVWNPF 526 (635)
Q Consensus 499 ~st~~~~~GlnL~~a----------------------------------------------------~~vi~~d~~wnp~ 526 (635)
+|+.+|.|+|+... .+||.+|.|-++.
T Consensus 514 -ATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~r 592 (922)
T 1nkt_A 514 -ATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRR 592 (922)
T ss_dssp -EETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHH
T ss_pred -ecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHH
Confidence 79999999999853 4899999999999
Q ss_pred hHHhhhhhhhhcCCc
Q 006698 527 VERQAISRAYRLGQK 541 (635)
Q Consensus 527 ~~~Qa~gR~~R~GQ~ 541 (635)
.+.|++||++|.|..
T Consensus 593 iy~qr~GRTGRqGdp 607 (922)
T 1nkt_A 593 IDNQLRGRSGRQGDP 607 (922)
T ss_dssp HHHHHHHTSSGGGCC
T ss_pred HHHHHhcccccCCCC
Confidence 999999999999964
No 70
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.73 E-value=2.1e-16 Score=173.84 Aligned_cols=110 Identities=23% Similarity=0.207 Sum_probs=97.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCC
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGAS 514 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~ 514 (635)
.+.++||||+....++.+.+.|... |+++..++|+++..+|..+++.|++ |.+.|++ +|+++++|+|++.++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~l~~f~~--g~~~VLV-aT~~l~~GlDip~v~ 515 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI-----GIKVNYLHSEIKTLERIEIIRDLRL--GKYDVLV-GINLLREGLDIPEVS 515 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHH--TSCSEEE-ESCCCSTTCCCTTEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc-----CCCeEEEeCCCCHHHHHHHHHHHhc--CCeEEEE-ecchhhCCcccCCCC
Confidence 6789999999999999999999987 9999999999999999999999987 5577666 699999999999999
Q ss_pred eEEEeCC-----CCChhhHHhhhhhhhhcCCcceEEEEEEEeCCCh
Q 006698 515 RVVLLDV-----VWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555 (635)
Q Consensus 515 ~vi~~d~-----~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~ti 555 (635)
.||++|. |+++..+.|++||++|.+ ...++.|+...+.
T Consensus 516 lVi~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 516 LVAILDADKEGFLRSERSLIQTIGRAARNA---EGRVIMYADKITK 558 (661)
T ss_dssp EEEETTTTCCTTTTSHHHHHHHHHTTTTST---TCEEEEECSSCCH
T ss_pred EEEEeCcccccCCCCHHHHHHHhCcccCCC---CCEEEEEEeCCCH
Confidence 9999998 899999999999999963 3445667766553
No 71
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.72 E-value=2.2e-17 Score=155.82 Aligned_cols=155 Identities=17% Similarity=0.147 Sum_probs=108.4
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh----CCCCCcEEEeC-cc
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL----HPRCRPVIIAP-RS 143 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~----~~~~~~LIv~P-~~ 143 (635)
.|+|||.+++..+++ ++++++..++|+|||++++..+...+.. ....++||+|| ..
T Consensus 23 ~~~~~Q~~~i~~~~~-------------------~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~ 83 (207)
T 2gxq_A 23 TPTPIQAAALPLALE-------------------GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRE 83 (207)
T ss_dssp SCCHHHHHHHHHHHT-------------------TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHH
T ss_pred CCCHHHHHHHHHHcC-------------------CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHH
Confidence 699999999998864 5689999999999999877666554432 23456899999 58
Q ss_pred chHHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcch
Q 006698 144 MLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD 223 (635)
Q Consensus 144 l~~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~ 223 (635)
+..||.+++.++.+.+++..+.+......... ......+|+++|++.+.......
T Consensus 84 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~i~v~T~~~l~~~~~~~ 138 (207)
T 2gxq_A 84 LALQVASELTAVAPHLKVVAVYGGTGYGKQKE-------------------------ALLRGADAVVATPGRALDYLRQG 138 (207)
T ss_dssp HHHHHHHHHHHHCTTSCEEEECSSSCSHHHHH-------------------------HHHHCCSEEEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcceEEEEECCCChHHHHH-------------------------HhhCCCCEEEECHHHHHHHHHcC
Confidence 99999999999987766655544221111100 01235789999999987665331
Q ss_pred hhhhhhccCCCEEEEeCCCcCCCc--ccHHHHHHHhc-ccCcEEEEeccc
Q 006698 224 ELSGILLDLPGLFVFDEGHTPRND--DTCMFKALSRI-KTRRRIILSGTP 270 (635)
Q Consensus 224 ~~~~~~~~~~~~vIvDEaH~~kn~--~s~~~~~l~~l-~~~~~l~LTgTP 270 (635)
.+....+++||+||||++.+. .......+..+ +..+++++||||
T Consensus 139 ---~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 185 (207)
T 2gxq_A 139 ---VLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATL 185 (207)
T ss_dssp ---SSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSC
T ss_pred ---CcchhhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEec
Confidence 223456899999999987433 23333444444 356789999998
No 72
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.71 E-value=2.9e-17 Score=156.11 Aligned_cols=157 Identities=15% Similarity=0.172 Sum_probs=99.2
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh----CCCCCcEEEeCc-
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL----HPRCRPVIIAPR- 142 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~----~~~~~~LIv~P~- 142 (635)
.+|+|||.+++..+++ ++++++.+++|+|||++++..+...+.. ....++|||||.
T Consensus 32 ~~l~~~Q~~~i~~~~~-------------------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~ 92 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALE-------------------GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKV 92 (216)
T ss_dssp CCCCHHHHHHHHHHHT-------------------TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSH
T ss_pred CCchHHHHHHHHHHhc-------------------CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHH
Confidence 4699999999998864 4689999999999999998887765543 235688999995
Q ss_pred cchHH-HHHHHHHhcCC-CcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhh
Q 006698 143 SMLLT-WEEEFKKWGID-IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV 220 (635)
Q Consensus 143 ~l~~q-W~~E~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~ 220 (635)
.++.| |.+++.++... +.+..+.+.......... .....+|+++|++.+....
T Consensus 93 ~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~-------------------------~~~~~~i~v~T~~~l~~~~ 147 (216)
T 3b6e_A 93 LLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPE-------------------------VVKSCDIIISTAQILENSL 147 (216)
T ss_dssp HHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHH-------------------------HHHHCSEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHh-------------------------hccCCCEEEECHHHHHHHH
Confidence 77788 99999988643 444444332211110000 0134689999999988765
Q ss_pred cchhh---hhhhccCCCEEEEeCCCcCCCcccHHHHHHHhc------------------ccCcEEEEecc
Q 006698 221 SGDEL---SGILLDLPGLFVFDEGHTPRNDDTCMFKALSRI------------------KTRRRIILSGT 269 (635)
Q Consensus 221 ~~~~~---~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l------------------~~~~~l~LTgT 269 (635)
..... ..+....+++||+||||++..... ....+..+ +..++++||||
T Consensus 148 ~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 148 LNLENGEDAGVQLSDFSLIIIDECHHTNKEAV-YNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HC-------CCCGGGCSEEEETTC-------C-HHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred hccCcccccccchhcccEEEEECchhhccCCc-HHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 43211 012345689999999999864322 11111111 34679999998
No 73
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.71 E-value=3.9e-17 Score=155.69 Aligned_cols=157 Identities=11% Similarity=0.087 Sum_probs=105.6
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCC-CCCcEEEeC-ccchH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP-RCRPVIIAP-RSMLL 146 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~-~~~~LIv~P-~~l~~ 146 (635)
.|+|||.+++..+++ ++++++..++|+|||+.++..+........ ..++||||| ..|..
T Consensus 36 ~~~~~Q~~~i~~~~~-------------------~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 96 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL-------------------GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAF 96 (220)
T ss_dssp CCCHHHHHHHHHHHT-------------------TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHH
T ss_pred CCCHHHHHHHHHHhC-------------------CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHH
Confidence 499999999998864 457999999999999988877765544332 347899999 68899
Q ss_pred HHHHHHHHhcC---CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcch
Q 006698 147 TWEEEFKKWGI---DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD 223 (635)
Q Consensus 147 qW~~E~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~ 223 (635)
||.+++.++.. ++++..+.+... .......+. ....+|+++|++.+.......
T Consensus 97 q~~~~~~~~~~~~~~~~v~~~~g~~~----~~~~~~~~~--------------------~~~~~i~v~T~~~l~~~~~~~ 152 (220)
T 1t6n_A 97 QISKEYERFSKYMPNVKVAVFFGGLS----IKKDEEVLK--------------------KNCPHIVVGTPGRILALARNK 152 (220)
T ss_dssp HHHHHHHHHTTTSTTCCEEEESCCSC----HHHHHHHHH--------------------HSCCSEEEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCCCceEEEEeCCCC----hHHHHHHHh--------------------cCCCCEEEeCHHHHHHHHHhC
Confidence 99999999853 444444433211 111100000 124589999999987765432
Q ss_pred hhhhhhccCCCEEEEeCCCcCCCcc---cHHHHHHHhc-ccCcEEEEecccC
Q 006698 224 ELSGILLDLPGLFVFDEGHTPRNDD---TCMFKALSRI-KTRRRIILSGTPF 271 (635)
Q Consensus 224 ~~~~~~~~~~~~vIvDEaH~~kn~~---s~~~~~l~~l-~~~~~l~LTgTP~ 271 (635)
.+....+++||+||||++.... ......+..+ +..+++++||||-
T Consensus 153 ---~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 201 (220)
T 1t6n_A 153 ---SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLS 201 (220)
T ss_dssp ---SSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCC
T ss_pred ---CCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecC
Confidence 2334568999999999985421 1222233333 3567899999984
No 74
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.70 E-value=7e-17 Score=159.48 Aligned_cols=137 Identities=17% Similarity=0.221 Sum_probs=114.6
Q ss_pred cccchHHHHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 006698 419 EAGIKTRFLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498 (635)
Q Consensus 419 ~~s~K~~~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll 498 (635)
..+.|+..|.+++....+.++||||+....++.+.+.|... |+.+..++|++++.+|..+++.|++ +..+|++
T Consensus 11 ~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~-----g~~~~~lhg~l~~~~r~~~~~~f~~--g~~~vLV 83 (300)
T 3i32_A 11 PVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL-----GHPAQALHGDMSQGERERVMGAFRQ--GEVRVLV 83 (300)
T ss_dssp CSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTT-----TCCEEEECSCCCTHHHHHHHHHHHH--TSCCEEE
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhC-----CCCEEEEeCCCCHHHHHHHHHHhhc--CCceEEE
Confidence 34679999999998888899999999999999999999887 9999999999999999999999997 5677777
Q ss_pred EccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeCCChHHHHHHHHHHhh
Q 006698 499 ASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITSETLEWDKLRRQARKV 567 (635)
Q Consensus 499 ~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~tiEe~i~~~~~~K~ 567 (635)
+|+++++|+|++++++||+||+||++..+.||+||++|.|+. ..+|.|++.. |...+..++++.
T Consensus 84 -aT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~--G~~i~l~~~~--e~~~~~~ie~~~ 147 (300)
T 3i32_A 84 -ATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRG--GRVVLLYGPR--ERRDVEALERAV 147 (300)
T ss_dssp -ECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-------CEEEEEECSS--THHHHHHHHHHH
T ss_pred -EechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCC--ceEEEEeChH--HHHHHHHHHHHh
Confidence 699999999999999999999999999999999999999976 4566677665 344555554443
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.70 E-value=6.9e-15 Score=161.91 Aligned_cols=123 Identities=20% Similarity=0.160 Sum_probs=104.2
Q ss_pred chHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEE
Q 006698 422 IKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499 (635)
Q Consensus 422 ~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~ 499 (635)
.+...+...+... .+.++||||+....++.|.+.|... |+.+..++|+++..+|..+++.|+. |.+.|++
T Consensus 423 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~-----gi~~~~lh~~~~~~~R~~~~~~f~~--g~~~VLv- 494 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEH-----GIRARYLHHELDAFKRQALIRDLRL--GHYDCLV- 494 (664)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHT-----TCCEEEECTTCCHHHHHHHHHHHHT--TSCSEEE-
T ss_pred chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc-----CCCceeecCCCCHHHHHHHHHHhhc--CCceEEE-
Confidence 3455555544443 7889999999999999999999987 9999999999999999999999987 5677766
Q ss_pred ccCCcccccccccCCeEEEeCC-----CCChhhHHhhhhhhhhcCCcceEEEEEEEeCCCh
Q 006698 500 STKACCEGINLVGASRVVLLDV-----VWNPFVERQAISRAYRLGQKRVVHVYHLITSETL 555 (635)
Q Consensus 500 st~~~~~GlnL~~a~~vi~~d~-----~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~~ti 555 (635)
+|+++++|+|++.++.||++|. |+++..+.|++||++|.|. -.++.|+...+.
T Consensus 495 aT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~---G~~i~~~~~~~~ 552 (664)
T 1c4o_A 495 GINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR---GEVWLYADRVSE 552 (664)
T ss_dssp ESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT---CEEEEECSSCCH
T ss_pred ccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCC---CEEEEEEcCCCH
Confidence 6999999999999999999998 8999999999999999863 345556666543
No 76
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.68 E-value=2e-15 Score=160.37 Aligned_cols=120 Identities=17% Similarity=0.161 Sum_probs=96.9
Q ss_pred cchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 006698 421 GIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498 (635)
Q Consensus 421 s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll 498 (635)
..|..++.+.+... .+.+|||||++....+.|...|.+. |+++..++|+....++..+...|+. + .|+|
T Consensus 457 ~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~-----Gi~~~vLhgkq~~rE~~ii~~ag~~--g--~VtV 527 (822)
T 3jux_A 457 KEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKK-----GIPHQVLNAKYHEKEAEIVAKAGQK--G--MVTI 527 (822)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTT-----TCCCEEECSCHHHHHHHHHHHHHST--T--CEEE
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHC-----CCCEEEeeCCchHHHHHHHHhCCCC--C--eEEE
Confidence 45888888877764 6889999999999999999999987 9999999999655555444455654 3 3555
Q ss_pred EccCCcccccccc--------cCCeEEEeCCCCChhhHHhhhhhhhhcCCcceEEEEEEEeC
Q 006698 499 ASTKACCEGINLV--------GASRVVLLDVVWNPFVERQAISRAYRLGQKRVVHVYHLITS 552 (635)
Q Consensus 499 ~st~~~~~GlnL~--------~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ~~~V~vy~li~~ 552 (635)
+|+.+|.|+|+. +..+||.+|.|-++..+.|++||++|.|++=. ...|++.
T Consensus 528 -ATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~--a~~fvsl 586 (822)
T 3jux_A 528 -ATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGE--SIFFLSL 586 (822)
T ss_dssp -EETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCE--EEEEEET
T ss_pred -EcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCee--EEEEech
Confidence 799999999997 66799999999999999999999999997543 3334443
No 77
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.67 E-value=1.9e-16 Score=150.66 Aligned_cols=161 Identities=17% Similarity=0.115 Sum_probs=106.4
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh-CCCCCcEEEeC-ccchH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~-~~~~~~LIv~P-~~l~~ 146 (635)
.|+|||.+++..+.+ ++++++..++|+|||++++..+...... ....++||||| ..|..
T Consensus 26 ~~~~~Q~~~i~~~~~-------------------~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~ 86 (219)
T 1q0u_A 26 KPTEIQERIIPGALR-------------------GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELAT 86 (219)
T ss_dssp SCCHHHHHHHHHHHH-------------------TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHHhC-------------------CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHH
Confidence 589999999998875 5689999999999998876655444332 23457899999 68889
Q ss_pred HHHHHHHHhcCCC------cccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhh
Q 006698 147 TWEEEFKKWGIDI------PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV 220 (635)
Q Consensus 147 qW~~E~~~~~~~~------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~ 220 (635)
||.+++.++.... .+..+.+ ...... . ...+....+|+|+|++.+....
T Consensus 87 q~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~-----~---------------~~~~~~~~~Iiv~Tp~~l~~~l 141 (219)
T 1q0u_A 87 QIYHETLKITKFCPKDRMIVARCLIG-----GTDKQK-----A---------------LEKLNVQPHIVIGTPGRINDFI 141 (219)
T ss_dssp HHHHHHHHHHTTSCGGGCCCEEEECC-----CSHHHH-----T---------------TCCCSSCCSEEEECHHHHHHHH
T ss_pred HHHHHHHHHhhhcccccceEEEEEeC-----CCCHHH-----H---------------HHHcCCCCCEEEeCHHHHHHHH
Confidence 9999999886432 2222221 111000 0 0011236789999999987765
Q ss_pred cchhhhhhhccCCCEEEEeCCCcCCCcc--cHHHHHHHhc-ccCcEEEEecccCCCChhh
Q 006698 221 SGDELSGILLDLPGLFVFDEGHTPRNDD--TCMFKALSRI-KTRRRIILSGTPFQNNFQE 277 (635)
Q Consensus 221 ~~~~~~~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~l-~~~~~l~LTgTP~~n~~~e 277 (635)
... .+....+++||+||||++.+.+ ......+..+ +..+++++|||+ .+...+
T Consensus 142 ~~~---~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~-~~~~~~ 197 (219)
T 1q0u_A 142 REQ---ALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATI-PEKLKP 197 (219)
T ss_dssp HTT---CCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCC-CGGGHH
T ss_pred HcC---CCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCC-CHHHHH
Confidence 431 1223457999999999985432 3344444555 356789999997 334443
No 78
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.67 E-value=1.7e-16 Score=152.97 Aligned_cols=155 Identities=16% Similarity=0.138 Sum_probs=105.2
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh-----CCCCCcEEEeC-c
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL-----HPRCRPVIIAP-R 142 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~-----~~~~~~LIv~P-~ 142 (635)
.|+|||.+++..++. ++++++..+||+|||++++..+...+.. ....++||||| .
T Consensus 47 ~~~~~Q~~~i~~~~~-------------------~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~ 107 (236)
T 2pl3_A 47 LVTEIQKQTIGLALQ-------------------GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTR 107 (236)
T ss_dssp BCCHHHHHHHHHHHT-------------------TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSH
T ss_pred CCCHHHHHHHHHHhC-------------------CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCH
Confidence 689999999998864 5689999999999999877665544322 23456899999 6
Q ss_pred cchHHHHHHHHHhcCC--CcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhh
Q 006698 143 SMLLTWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV 220 (635)
Q Consensus 143 ~l~~qW~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~ 220 (635)
.|..||.+++.++... +.+..+.+.. ...... . .....+|+|+|++.+....
T Consensus 108 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~---~-------------------~~~~~~iiv~Tp~~l~~~l 161 (236)
T 2pl3_A 108 ELAYQTFEVLRKVGKNHDFSAGLIIGGK----DLKHEA---E-------------------RINNINILVCTPGRLLQHM 161 (236)
T ss_dssp HHHHHHHHHHHHHTTTSSCCEEEECCC------CHHHH---H-------------------HHTTCSEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCeeEEEEECCC----CHHHHH---H-------------------hCCCCCEEEECHHHHHHHH
Confidence 8999999999998754 3333333211 110000 0 0135789999999987654
Q ss_pred cchhhhhhhccCCCEEEEeCCCcCCCc--ccHHHHHHHhc-ccCcEEEEeccc
Q 006698 221 SGDELSGILLDLPGLFVFDEGHTPRND--DTCMFKALSRI-KTRRRIILSGTP 270 (635)
Q Consensus 221 ~~~~~~~~~~~~~~~vIvDEaH~~kn~--~s~~~~~l~~l-~~~~~l~LTgTP 270 (635)
... ..+....+++||+||||++.+. .......+..+ +..+++++|||+
T Consensus 162 ~~~--~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 212 (236)
T 2pl3_A 162 DET--VSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQ 212 (236)
T ss_dssp HHC--SSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSC
T ss_pred Hhc--CCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeC
Confidence 321 1133356799999999988643 23444445555 355689999997
No 79
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.66 E-value=2.2e-16 Score=151.38 Aligned_cols=154 Identities=17% Similarity=0.109 Sum_probs=104.6
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHH-HHhCCCCCcEEEeC-ccchH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY-MKLHPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~-~~~~~~~~~LIv~P-~~l~~ 146 (635)
.|+|||.+++..+.. ++++++..++|+|||++++..+... .......++||||| ..|..
T Consensus 46 ~~~~~Q~~~i~~~~~-------------------~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~ 106 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRC-------------------GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAV 106 (230)
T ss_dssp SCCHHHHHHHHHHHT-------------------TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHHhC-------------------CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHH
Confidence 499999999998754 5689999999999998865544333 23344567899999 68999
Q ss_pred HHHHHHHHhcC---CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcch
Q 006698 147 TWEEEFKKWGI---DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD 223 (635)
Q Consensus 147 qW~~E~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~ 223 (635)
||.+++.++.. ++++..+.+.. ...... . .....+|+|+|++.+.......
T Consensus 107 q~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~---~-------------------~~~~~~Iiv~Tp~~l~~~~~~~ 160 (230)
T 2oxc_A 107 QIHSVITAIGIKMEGLECHVFIGGT----PLSQDK---T-------------------RLKKCHIAVGSPGRIKQLIELD 160 (230)
T ss_dssp HHHHHHHHHTTTSTTCCEEEECTTS----CHHHHH---H-------------------HTTSCSEEEECHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccCCceEEEEeCCC----CHHHHH---H-------------------hccCCCEEEECHHHHHHHHhcC
Confidence 99999999863 34444333311 110000 0 0135789999999988765432
Q ss_pred hhhhhhccCCCEEEEeCCCcCCCc---ccHHHHHHHhcc-cCcEEEEeccc
Q 006698 224 ELSGILLDLPGLFVFDEGHTPRND---DTCMFKALSRIK-TRRRIILSGTP 270 (635)
Q Consensus 224 ~~~~~~~~~~~~vIvDEaH~~kn~---~s~~~~~l~~l~-~~~~l~LTgTP 270 (635)
.+....+++||+||||++... .......+..++ ..+++++|||+
T Consensus 161 ---~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~ 208 (230)
T 2oxc_A 161 ---YLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATY 208 (230)
T ss_dssp ---SSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred ---CcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEecc
Confidence 123346799999999998543 233334445554 56689999996
No 80
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.66 E-value=3.7e-16 Score=149.33 Aligned_cols=154 Identities=15% Similarity=0.130 Sum_probs=102.1
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHH-HhCCCCCcEEEeC-ccchH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM-KLHPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~-~~~~~~~~LIv~P-~~l~~ 146 (635)
.|+|||.+++..+++ ++++++..++|+|||++++..+...+ ......++||+|| ..+..
T Consensus 36 ~~~~~Q~~~i~~~~~-------------------~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~ 96 (224)
T 1qde_A 36 EPSAIQQRAIMPIIE-------------------GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELAL 96 (224)
T ss_dssp SCCHHHHHHHHHHHT-------------------TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHH
T ss_pred CCcHHHHHHHHHHhc-------------------CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHH
Confidence 699999999998864 46899999999999988554443333 3334457899999 68889
Q ss_pred HHHHHHHHhcCC--CcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchh
Q 006698 147 TWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224 (635)
Q Consensus 147 qW~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~ 224 (635)
||.+++.++... +.+..+.+........ ......+|+++|++.+.......
T Consensus 97 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------------------------~~~~~~~iiv~Tp~~l~~~~~~~- 149 (224)
T 1qde_A 97 QIQKVVMALAFHMDIKVHACIGGTSFVEDA--------------------------EGLRDAQIVVGTPGRVFDNIQRR- 149 (224)
T ss_dssp HHHHHHHHHTTTSCCCEEEECC------------------------------------CTTCSEEEECHHHHHHHHHTT-
T ss_pred HHHHHHHHHhcccCceEEEEeCCcchHHHH--------------------------hcCCCCCEEEECHHHHHHHHHhC-
Confidence 999999998653 3333332211100000 00124789999999987655331
Q ss_pred hhhhhccCCCEEEEeCCCcCCCc--ccHHHHHHHhc-ccCcEEEEeccc
Q 006698 225 LSGILLDLPGLFVFDEGHTPRND--DTCMFKALSRI-KTRRRIILSGTP 270 (635)
Q Consensus 225 ~~~~~~~~~~~vIvDEaH~~kn~--~s~~~~~l~~l-~~~~~l~LTgTP 270 (635)
.+....+++||+||||++... .......+..+ +..++++||||+
T Consensus 150 --~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~ 196 (224)
T 1qde_A 150 --RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATM 196 (224)
T ss_dssp --SSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSC
T ss_pred --CcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeec
Confidence 223456899999999987543 22333444444 455689999998
No 81
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.65 E-value=5e-16 Score=146.31 Aligned_cols=155 Identities=17% Similarity=0.184 Sum_probs=104.0
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh-CCCCCcEEEeC-ccchH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~-~~~~~~LIv~P-~~l~~ 146 (635)
.|+|||.+++..+++ ++++++..++|+|||+.++..+...... ....++||+|| ..|..
T Consensus 25 ~~~~~Q~~~i~~~~~-------------------~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 85 (206)
T 1vec_A 25 KPSPIQEESIPIALS-------------------GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELAL 85 (206)
T ss_dssp SCCHHHHHHHHHHHT-------------------TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHH
T ss_pred CCCHHHHHHHHHHcc-------------------CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHH
Confidence 599999999998864 5689999999999998877665544322 23446899999 67889
Q ss_pred HHHHHHHHhcC---CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcch
Q 006698 147 TWEEEFKKWGI---DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD 223 (635)
Q Consensus 147 qW~~E~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~ 223 (635)
||.+++.++.. +..+..+.+.. ..... .. ......+|+++|++.+.......
T Consensus 86 q~~~~~~~~~~~~~~~~~~~~~g~~----~~~~~---~~------------------~~~~~~~i~v~T~~~l~~~~~~~ 140 (206)
T 1vec_A 86 QVSQICIQVSKHMGGAKVMATTGGT----NLRDD---IM------------------RLDDTVHVVIATPGRILDLIKKG 140 (206)
T ss_dssp HHHHHHHHHTTTSSSCCEEEECSSS----CHHHH---HH------------------HTTSCCSEEEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcCCceEEEEeCCc----cHHHH---HH------------------hcCCCCCEEEeCHHHHHHHHHcC
Confidence 99999998864 33333333211 11000 00 01246789999999987655331
Q ss_pred hhhhhhccCCCEEEEeCCCcCCCcc--cHHHHHHHhcc-cCcEEEEeccc
Q 006698 224 ELSGILLDLPGLFVFDEGHTPRNDD--TCMFKALSRIK-TRRRIILSGTP 270 (635)
Q Consensus 224 ~~~~~~~~~~~~vIvDEaH~~kn~~--s~~~~~l~~l~-~~~~l~LTgTP 270 (635)
......+++||+||||++.... ......+..++ ..+++++|||+
T Consensus 141 ---~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~ 187 (206)
T 1vec_A 141 ---VAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATF 187 (206)
T ss_dssp ---CSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred ---CcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeC
Confidence 1233467999999999876532 22233334443 67789999998
No 82
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.65 E-value=4.6e-16 Score=150.86 Aligned_cols=156 Identities=19% Similarity=0.181 Sum_probs=105.8
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC-CCCCcEEEeC-ccchH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH-PRCRPVIIAP-RSMLL 146 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~-~~~~~LIv~P-~~l~~ 146 (635)
.|+|||.+++..+++ ++++++..++|+|||++++..+...+... ...++||+|| ..|..
T Consensus 65 ~~~~~Q~~~i~~i~~-------------------~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~ 125 (249)
T 3ber_A 65 KPTKIQIEAIPLALQ-------------------GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAF 125 (249)
T ss_dssp SCCHHHHHHHHHHHT-------------------TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHHhC-------------------CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHH
Confidence 699999999998864 56899999999999998776665544433 3456899999 68889
Q ss_pred HHHHHHHHhcCC--CcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchh
Q 006698 147 TWEEEFKKWGID--IPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224 (635)
Q Consensus 147 qW~~E~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~ 224 (635)
||.+++.++... +++..+.+.. ...... . ......+|+|+|++.+......
T Consensus 126 q~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~---~------------------~~~~~~~I~v~Tp~~l~~~l~~-- 178 (249)
T 3ber_A 126 QISEQFEALGSSIGVQSAVIVGGI----DSMSQS---L------------------ALAKKPHIIIATPGRLIDHLEN-- 178 (249)
T ss_dssp HHHHHHHHHHGGGTCCEEEECTTS----CHHHHH---H------------------HHHTCCSEEEECHHHHHHHHHH--
T ss_pred HHHHHHHHHhccCCeeEEEEECCC----ChHHHH---H------------------HhcCCCCEEEECHHHHHHHHHc--
Confidence 999999998543 3333333211 110000 0 0124678999999998765532
Q ss_pred hhhhhccCCCEEEEeCCCcCCCc--ccHHHHHHHhc-ccCcEEEEeccc
Q 006698 225 LSGILLDLPGLFVFDEGHTPRND--DTCMFKALSRI-KTRRRIILSGTP 270 (635)
Q Consensus 225 ~~~~~~~~~~~vIvDEaH~~kn~--~s~~~~~l~~l-~~~~~l~LTgTP 270 (635)
...+....+++||+||||++.+. .....+.+..+ +..+++++|||+
T Consensus 179 ~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~ 227 (249)
T 3ber_A 179 TKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATM 227 (249)
T ss_dssp STTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSC
T ss_pred CCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccC
Confidence 11233456799999999987543 23334444445 356789999998
No 83
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.64 E-value=9.7e-16 Score=147.57 Aligned_cols=156 Identities=14% Similarity=0.133 Sum_probs=102.8
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh-CCCCCcEEEeC-ccchH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAP-RSMLL 146 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~-~~~~~~LIv~P-~~l~~ 146 (635)
.|+|||.+++..+++ ++++++..++|+|||++++..+...+.. ....++||||| ..|..
T Consensus 52 ~~~~~Q~~ai~~i~~-------------------~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~ 112 (237)
T 3bor_A 52 KPSAIQQRAIIPCIK-------------------GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQ 112 (237)
T ss_dssp SCCHHHHHHHHHHHT-------------------TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHHhC-------------------CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHH
Confidence 499999999998864 4689999999999998876665544332 23457899999 68899
Q ss_pred HHHHHHHHhcCCC--cccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchh
Q 006698 147 TWEEEFKKWGIDI--PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224 (635)
Q Consensus 147 qW~~E~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~ 224 (635)
||.+++.++.... .+....+.. ...... .. -.....+|+++|++.+.......
T Consensus 113 q~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~---~~-----------------l~~~~~~Ilv~Tp~~l~~~l~~~- 167 (237)
T 3bor_A 113 QIQKVILALGDYMGATCHACIGGT----NVRNEM---QK-----------------LQAEAPHIVVGTPGRVFDMLNRR- 167 (237)
T ss_dssp HHHHHHHHHTTTTTCCEEEECC-------------------------------------CCCSEEEECHHHHHHHHHTT-
T ss_pred HHHHHHHHHhhhcCceEEEEECCC----chHHHH---HH-----------------HhcCCCCEEEECHHHHHHHHHhC-
Confidence 9999999986532 222222211 000000 00 00123789999999887655331
Q ss_pred hhhhhccCCCEEEEeCCCcCCC--cccHHHHHHHhc-ccCcEEEEeccc
Q 006698 225 LSGILLDLPGLFVFDEGHTPRN--DDTCMFKALSRI-KTRRRIILSGTP 270 (635)
Q Consensus 225 ~~~~~~~~~~~vIvDEaH~~kn--~~s~~~~~l~~l-~~~~~l~LTgTP 270 (635)
.+....+++||+||||++.. ........+..+ +..+++++|||+
T Consensus 168 --~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~ 214 (237)
T 3bor_A 168 --YLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATM 214 (237)
T ss_dssp --SSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSC
T ss_pred --CcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEec
Confidence 12234579999999998743 334455555555 456789999998
No 84
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.63 E-value=1.2e-15 Score=148.69 Aligned_cols=155 Identities=17% Similarity=0.236 Sum_probs=104.4
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC----------CCCCcEE
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH----------PRCRPVI 138 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~----------~~~~~LI 138 (635)
.|+|||.+++..++. ++++++..++|+|||+.++..+...+... ...++||
T Consensus 45 ~~~~~Q~~~i~~i~~-------------------~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~li 105 (253)
T 1wrb_A 45 RPTPIQKNAIPAILE-------------------HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLI 105 (253)
T ss_dssp SCCHHHHHHHHHHHT-------------------TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEE
T ss_pred CCCHHHHHHHHHHhC-------------------CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEE
Confidence 599999999998864 56899999999999988776665544322 2247899
Q ss_pred EeC-ccchHHHHHHHHHhcCCC--cccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHH
Q 006698 139 IAP-RSMLLTWEEEFKKWGIDI--PFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRL 215 (635)
Q Consensus 139 v~P-~~l~~qW~~E~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~ 215 (635)
||| ..|..||.+++.++.... .+..+.+.. ...... . ......+|+|+|++.
T Consensus 106 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~---~------------------~~~~~~~Ivv~Tp~~ 160 (253)
T 1wrb_A 106 LAPTRELAIQILSESQKFSLNTPLRSCVVYGGA----DTHSQI---R------------------EVQMGCHLLVATPGR 160 (253)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSS----CSHHHH---H------------------HHSSCCSEEEECHHH
T ss_pred EECCHHHHHHHHHHHHHHhccCCceEEEEECCC----CHHHHH---H------------------HhCCCCCEEEECHHH
Confidence 999 689999999999986543 332222211 111100 0 012467899999999
Q ss_pred HHHhhcchhhhhhhccCCCEEEEeCCCcCCCc--ccHHHHHHHhc--c---cCcEEEEeccc
Q 006698 216 FEKLVSGDELSGILLDLPGLFVFDEGHTPRND--DTCMFKALSRI--K---TRRRIILSGTP 270 (635)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~--~s~~~~~l~~l--~---~~~~l~LTgTP 270 (635)
+....... .+....+++||+||||++... .......+..+ . ..+++++||||
T Consensus 161 l~~~l~~~---~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~ 219 (253)
T 1wrb_A 161 LVDFIEKN---KISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATF 219 (253)
T ss_dssp HHHHHHTT---SBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSC
T ss_pred HHHHHHcC---CCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeC
Confidence 88765432 123345789999999987543 23344444432 2 45689999998
No 85
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.61 E-value=3.5e-15 Score=142.87 Aligned_cols=156 Identities=19% Similarity=0.169 Sum_probs=103.8
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh-------CCCCCcEEEe
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL-------HPRCRPVIIA 140 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~-------~~~~~~LIv~ 140 (635)
.+|+|+|.+++..+.+ ++++++..++|+|||+.++..+...+.. ....++||||
T Consensus 41 ~~~~~~Q~~~i~~~~~-------------------~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~ 101 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQ-------------------GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLT 101 (228)
T ss_dssp CSCCHHHHHHHHHHHT-------------------TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEEC
T ss_pred CCCCHHHHHHHHHHhC-------------------CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEe
Confidence 3799999999988764 5689999999999998877655443322 2445679999
Q ss_pred C-ccchHHHHHHHHHhc-CCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHH
Q 006698 141 P-RSMLLTWEEEFKKWG-IDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEK 218 (635)
Q Consensus 141 P-~~l~~qW~~E~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~ 218 (635)
| ..|..||.+++.++. .++++..+.+........ ..+..+.+|+|+|++.+..
T Consensus 102 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~iiv~Tp~~l~~ 156 (228)
T 3iuy_A 102 PTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQI-------------------------EDISKGVDIIIATPGRLND 156 (228)
T ss_dssp SSHHHHHHHHHHHHHHCCTTCCEEEECC------CH-------------------------HHHHSCCSEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHH-------------------------HHhcCCCCEEEECHHHHHH
Confidence 9 778899999999984 334443333221111000 0112457899999999877
Q ss_pred hhcchhhhhhhccCCCEEEEeCCCcCCCc--ccHHHHHHHhc-ccCcEEEEeccc
Q 006698 219 LVSGDELSGILLDLPGLFVFDEGHTPRND--DTCMFKALSRI-KTRRRIILSGTP 270 (635)
Q Consensus 219 ~~~~~~~~~~~~~~~~~vIvDEaH~~kn~--~s~~~~~l~~l-~~~~~l~LTgTP 270 (635)
..... .+....+++||+||||++... .......+..+ +..+.+++|||+
T Consensus 157 ~~~~~---~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 157 LQMNN---SVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATW 208 (228)
T ss_dssp HHHTT---CCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred HHHcC---CcCcccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeC
Confidence 55331 223345799999999987543 23344444445 456789999996
No 86
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.60 E-value=2.6e-15 Score=145.54 Aligned_cols=158 Identities=21% Similarity=0.177 Sum_probs=102.3
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh--CCCCCcEEEeC-ccch
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL--HPRCRPVIIAP-RSML 145 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~--~~~~~~LIv~P-~~l~ 145 (635)
.|+|||.+++..++. ++++++..++|+|||+.++..+...+.. ....++||||| ..|.
T Consensus 51 ~~~~~Q~~~i~~~~~-------------------~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~ 111 (245)
T 3dkp_A 51 MPTPIQMQAIPVMLH-------------------GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELA 111 (245)
T ss_dssp SCCHHHHHHHHHHHT-------------------TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHH
T ss_pred CCCHHHHHHHHHHhC-------------------CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHH
Confidence 599999999988764 5689999999999999876665554432 23346899999 7888
Q ss_pred HHHHHHHHHhcCCCc--ccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcch
Q 006698 146 LTWEEEFKKWGIDIP--FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGD 223 (635)
Q Consensus 146 ~qW~~E~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~ 223 (635)
.||.+++.++..... +..+.+.. .. .... . .......+|+|+|++.+.......
T Consensus 112 ~q~~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~--~------------~~~~~~~~I~v~Tp~~l~~~l~~~ 167 (245)
T 3dkp_A 112 SQIHRELIKISEGTGFRIHMIHKAA-----VA-----AKKF--G------------PKSSKKFDILVTTPNRLIYLLKQD 167 (245)
T ss_dssp HHHHHHHHHHTTTSCCCEECCCHHH-----HH-----HTTT--S------------TTSCCCCCEEEECHHHHHHHHHSS
T ss_pred HHHHHHHHHHhcccCceEEEEecCc-----cH-----HHHh--h------------hhhcCCCCEEEECHHHHHHHHHhC
Confidence 999999999865332 22221100 00 0000 0 001246789999999987765431
Q ss_pred hhhhhhccCCCEEEEeCCCcCCCc-----ccHHHHHHHhc--ccCcEEEEeccc
Q 006698 224 ELSGILLDLPGLFVFDEGHTPRND-----DTCMFKALSRI--KTRRRIILSGTP 270 (635)
Q Consensus 224 ~~~~~~~~~~~~vIvDEaH~~kn~-----~s~~~~~l~~l--~~~~~l~LTgTP 270 (635)
. ..+....+++||+||||++... .......+..+ ...++++||||+
T Consensus 168 ~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 168 P-PGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp S-CSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSC
T ss_pred C-CCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccC
Confidence 1 1123345789999999998542 12223333333 345789999998
No 87
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=142.23 Aligned_cols=156 Identities=14% Similarity=0.170 Sum_probs=103.8
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh-----CCCCCcEEEeC-c
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL-----HPRCRPVIIAP-R 142 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~-----~~~~~~LIv~P-~ 142 (635)
.|+|+|.+++..++. ++++++..++|+|||+.++..+...+.. ....++||||| .
T Consensus 76 ~~~~~Q~~~i~~~~~-------------------~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~ 136 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLE-------------------GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTR 136 (262)
T ss_dssp BCCHHHHHHHHHHHH-------------------TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSH
T ss_pred CCCHHHHHHHHHHhC-------------------CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCH
Confidence 499999999988765 4689999999999999877665554433 13456899999 7
Q ss_pred cchHHHHHHHHHhcCCCc--ccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhh
Q 006698 143 SMLLTWEEEFKKWGIDIP--FYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLV 220 (635)
Q Consensus 143 ~l~~qW~~E~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~ 220 (635)
.|..||.+++.++..... +..+.+ +....... .. ...+.+|+|+|++.+....
T Consensus 137 ~La~q~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~---~~------------------~~~~~~Iiv~Tp~~l~~~~ 191 (262)
T 3ly5_A 137 ELAMQTFGVLKELMTHHVHTYGLIMG----GSNRSAEA---QK------------------LGNGINIIVATPGRLLDHM 191 (262)
T ss_dssp HHHHHHHHHHHHHTTTCCSCEEEECS----SSCHHHHH---HH------------------HHHCCSEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCceEEEEEC----CCCHHHHH---HH------------------hcCCCCEEEEcHHHHHHHH
Confidence 889999999999865432 222222 11111110 00 0135789999999887655
Q ss_pred cchhhhhhhccCCCEEEEeCCCcCCCc--ccHHHHHHHhc-ccCcEEEEeccc
Q 006698 221 SGDELSGILLDLPGLFVFDEGHTPRND--DTCMFKALSRI-KTRRRIILSGTP 270 (635)
Q Consensus 221 ~~~~~~~~~~~~~~~vIvDEaH~~kn~--~s~~~~~l~~l-~~~~~l~LTgTP 270 (635)
... ..+....+++||+||||++-.. .......+..+ +..++++||||+
T Consensus 192 ~~~--~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~ 242 (262)
T 3ly5_A 192 QNT--PGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQ 242 (262)
T ss_dssp HHC--TTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSC
T ss_pred Hcc--CCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecC
Confidence 321 1123345799999999987543 23334444445 446689999998
No 88
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.55 E-value=2.2e-14 Score=138.60 Aligned_cols=155 Identities=14% Similarity=0.102 Sum_probs=104.0
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh------CCCCCcEEEeC-
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL------HPRCRPVIIAP- 141 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~------~~~~~~LIv~P- 141 (635)
.++|||.+++..++. ++++++..++|+|||+.++..+...+.. ....++|||||
T Consensus 51 ~~~~~Q~~~i~~~~~-------------------g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt 111 (242)
T 3fe2_A 51 EPTAIQAQGWPVALS-------------------GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPT 111 (242)
T ss_dssp SCCHHHHHHHHHHHH-------------------TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSS
T ss_pred CCCHHHHHHHHHHhC-------------------CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCc
Confidence 599999999998765 5689999999999999877665554443 23446799999
Q ss_pred ccchHHHHHHHHHhcC--CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHh
Q 006698 142 RSMLLTWEEEFKKWGI--DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKL 219 (635)
Q Consensus 142 ~~l~~qW~~E~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~ 219 (635)
..|..||.+++.++.. ++.+..+.+.. ...... . .+..+.+|+|+|++.+...
T Consensus 112 ~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~----~~~~~~---~------------------~~~~~~~I~v~Tp~~l~~~ 166 (242)
T 3fe2_A 112 RELAQQVQQVAAEYCRACRLKSTCIYGGA----PKGPQI---R------------------DLERGVEICIATPGRLIDF 166 (242)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEECTTS----CHHHHH---H------------------HHHHCCSEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCceEEEEECCC----ChHHHH---H------------------HhcCCCCEEEECHHHHHHH
Confidence 7788999999998743 23333332211 111110 0 1123578999999998776
Q ss_pred hcchhhhhhhccCCCEEEEeCCCcCCCc--ccHHHHHHHhc-ccCcEEEEeccc
Q 006698 220 VSGDELSGILLDLPGLFVFDEGHTPRND--DTCMFKALSRI-KTRRRIILSGTP 270 (635)
Q Consensus 220 ~~~~~~~~~~~~~~~~vIvDEaH~~kn~--~s~~~~~l~~l-~~~~~l~LTgTP 270 (635)
.... ......+++||+||||++-.. .......+..+ +...++++|||+
T Consensus 167 l~~~---~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 167 LECG---KTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 217 (242)
T ss_dssp HHHT---SCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCC
T ss_pred HHcC---CCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeec
Confidence 5331 123345789999999987543 22333444444 456789999996
No 89
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.42 E-value=9.6e-13 Score=130.91 Aligned_cols=156 Identities=13% Similarity=0.092 Sum_probs=99.5
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh-CCCCCcEEEeC-ccch
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAP-RSML 145 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~-~~~~~~LIv~P-~~l~ 145 (635)
..++|+|.+++..++.. .++++|+..++|+|||+..+..+...... ....++||||| ..|.
T Consensus 113 ~~pt~iQ~~ai~~il~~-----------------~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa 175 (300)
T 3fmo_B 113 NRPSKIQENALPLMLAE-----------------PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELA 175 (300)
T ss_dssp CSCCHHHHHHHHHHTSS-----------------SCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHH
T ss_pred CCCCHHHHHHHHHHHcC-----------------CCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHH
Confidence 36899999999877431 13689999999999998866444443322 33346799999 7788
Q ss_pred HHHHHHHHHhcC---CCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcc
Q 006698 146 LTWEEEFKKWGI---DIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSG 222 (635)
Q Consensus 146 ~qW~~E~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~ 222 (635)
.|+.+.+.++.. .+.+....+....... .....+|+|+|++.+......
T Consensus 176 ~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~IlV~TP~~l~~~l~~ 227 (300)
T 3fmo_B 176 LQTGKVIEQMGKFYPELKLAYAVRGNKLERG----------------------------QKISEQIVIGTPGTVLDWCSK 227 (300)
T ss_dssp HHHHHHHHHHTTTSTTCCEEEESTTCCCCTT----------------------------CCCCCSEEEECHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhCCCcEEEEEeCCccHhhh----------------------------hcCCCCEEEECHHHHHHHHHh
Confidence 999999888753 3333332221110000 013568999999998766532
Q ss_pred hhhhhhhccCCCEEEEeCCCcCCCc---ccHHHHHHHhc-ccCcEEEEeccc
Q 006698 223 DELSGILLDLPGLFVFDEGHTPRND---DTCMFKALSRI-KTRRRIILSGTP 270 (635)
Q Consensus 223 ~~~~~~~~~~~~~vIvDEaH~~kn~---~s~~~~~l~~l-~~~~~l~LTgTP 270 (635)
. ..+......+||+||||++-.. .......+..+ +...++++|||+
T Consensus 228 ~--~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~ 277 (300)
T 3fmo_B 228 L--KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATF 277 (300)
T ss_dssp T--CCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCC
T ss_pred c--CCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccC
Confidence 1 1122345789999999997531 12222223333 446789999998
No 90
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.32 E-value=4.9e-11 Score=128.61 Aligned_cols=97 Identities=20% Similarity=0.298 Sum_probs=59.0
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE-EccCCccccccccc-
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIML-ASTKACCEGINLVG- 512 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll-~st~~~~~GlnL~~- 512 (635)
.+.++|||..+...++.+.+.|.. .. +.+.|.. .+|.++++.|+. ++ .|++ +.+...++|||+++
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~-------~~-~~~q~~~--~~~~~~l~~f~~--~~-~il~~V~~~~~~EGiD~~~~ 449 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSG-------IP-VIEENKK--TRHEEVLELMKT--GK-YLVMLVMRAKESEGVEFREK 449 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTT-------SC-EEESTTT--CCHHHHHHHHHT--SC-CEEEEEC-------------
T ss_pred CCCCEEEEeCCHHHHHHHHHHhcc-------Cc-eEecCCC--CcHHHHHHHHhc--CC-eEEEEEecCceecceecCCC
Confidence 456899999998888888776653 22 4556654 468899999987 22 2443 36899999999996
Q ss_pred ---CCeEEEeCCCCChh------------------------------hHHhhhhhhhhcCCcceE
Q 006698 513 ---ASRVVLLDVVWNPF------------------------------VERQAISRAYRLGQKRVV 544 (635)
Q Consensus 513 ---a~~vi~~d~~wnp~------------------------------~~~Qa~gR~~R~GQ~~~V 544 (635)
+..||++.+|+-+. ...|++||+.|--+.+-+
T Consensus 450 ~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~ 514 (540)
T 2vl7_A 450 ENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVK 514 (540)
T ss_dssp --CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCE
T ss_pred cccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEE
Confidence 78899999886333 245888888886555544
No 91
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.26 E-value=4.3e-10 Score=122.15 Aligned_cols=152 Identities=14% Similarity=0.152 Sum_probs=89.9
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccch-H
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSML-L 146 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~-~ 146 (635)
..++|-|..|+--+++ |-|....+|+|||+++...+.. .......++||||+.-+ .
T Consensus 78 ~~Pt~VQ~~~ip~Llq---------------------G~IaeakTGeGKTLvf~Lp~~L--~aL~G~qv~VvTPTreLA~ 134 (997)
T 2ipc_A 78 MRHFDVQLIGGAVLHE---------------------GKIAEMKTGEGKTLVATLAVAL--NALTGKGVHVVTVNDYLAR 134 (997)
T ss_dssp CCCCHHHHHHHHHHHT---------------------TSEEECCSTHHHHHHHHHHHHH--HHTTCSCCEEEESSHHHHH
T ss_pred CCCcHHHHhhcccccC---------------------CceeeccCCCchHHHHHHHHHH--HHHhCCCEEEEeCCHHHHH
Confidence 3678899999877743 3388999999999877655422 22234578999996644 4
Q ss_pred H---HHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHH-Hhhcc
Q 006698 147 T---WEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFE-KLVSG 222 (635)
Q Consensus 147 q---W~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~-~~~~~ 222 (635)
| |...+.++. ++++..+.+... ...+.. ....+|++.|...|. .++..
T Consensus 135 Qdae~m~~l~~~l-GLsv~~i~Gg~~--~~~r~~-------------------------ay~~DIvyGTpgrlgfDyLrd 186 (997)
T 2ipc_A 135 RDAEWMGPVYRGL-GLSVGVIQHAST--PAERRK-------------------------AYLADVTYVTNSELGFDYLRD 186 (997)
T ss_dssp HHHHHHHHHHHTT-TCCEEECCTTCC--HHHHHH-------------------------HHTSSEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCeEEEEeCCCC--HHHHHH-------------------------HcCCCEEEECchhhhhHHHHH
Confidence 4 444444432 444444433211 000000 125789999999884 22221
Q ss_pred h---hhhhhhcc---CCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHH
Q 006698 223 D---ELSGILLD---LPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS 283 (635)
Q Consensus 223 ~---~~~~~~~~---~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~ 283 (635)
. ....+... ...++|+||+|.+--. .+..-+.+|| |.+.. ..+|..++
T Consensus 187 ~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiD-----------eartPLIISg-p~~~~-~~lY~~~~ 240 (997)
T 2ipc_A 187 NMAISPDQLVLRHDHPLHYAIIDEVDSILID-----------EARTPLIISG-PAEKA-TDLYYKMA 240 (997)
T ss_dssp TSCSSTTTCCSCSSSSSCEEEETTHHHHTTS-----------STTSCEEEEE-SCSSC-HHHHHHHH
T ss_pred hhhcchhhcccccCCCcceEEEechHHHHHh-----------CCCCCeeeeC-CCccc-hHHHHHHH
Confidence 1 01123344 6789999999964322 2233489999 88766 55555443
No 92
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.03 E-value=1.5e-09 Score=103.79 Aligned_cols=151 Identities=18% Similarity=0.120 Sum_probs=89.3
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHH-hCC--CCCcEEEeCc-cc
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMK-LHP--RCRPVIIAPR-SM 144 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~-~~~--~~~~LIv~P~-~l 144 (635)
.++++|.+++..+.. ++.+++..++|+|||.+....+..... .+. ..++++++|. .+
T Consensus 61 p~~~~q~~~i~~i~~-------------------g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~l 121 (235)
T 3llm_A 61 PVKKFESEILEAISQ-------------------NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRIS 121 (235)
T ss_dssp GGGGGHHHHHHHHHH-------------------CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHH
T ss_pred ChHHHHHHHHHHHhc-------------------CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHH
Confidence 589999999998854 568899999999999765555444332 222 2356889994 45
Q ss_pred hHHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchh
Q 006698 145 LLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDE 224 (635)
Q Consensus 145 ~~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~ 224 (635)
..|..+.+.+.... .+.. ..+... +.... .-....+|+++|.+.+......
T Consensus 122 a~q~~~~~~~~~~~-~~~~-----~~g~~~--------------------~~~~~-~~~~~~~Ivv~Tpg~l~~~l~~-- 172 (235)
T 3llm_A 122 AVSVAERVAFERGE-EPGK-----SCGYSV--------------------RFESI-LPRPHASIMFCTVGVLLRKLEA-- 172 (235)
T ss_dssp HHHHHHHHHHTTTC-CTTS-----SEEEEE--------------------TTEEE-CCCSSSEEEEEEHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhcc-ccCc-----eEEEee--------------------chhhc-cCCCCCeEEEECHHHHHHHHHh--
Confidence 56666666654311 1000 000000 00000 0013567999999888765532
Q ss_pred hhhhhccCCCEEEEeCCCcCCCcccHHH-HHHHh----cccCcEEEEecccCC
Q 006698 225 LSGILLDLPGLFVFDEGHTPRNDDTCMF-KALSR----IKTRRRIILSGTPFQ 272 (635)
Q Consensus 225 ~~~~~~~~~~~vIvDEaH~~kn~~s~~~-~~l~~----l~~~~~l~LTgTP~~ 272 (635)
....+++||+||||+. +...... ..++. .+..+.+++|||+-.
T Consensus 173 ----~l~~~~~lVlDEah~~-~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~ 220 (235)
T 3llm_A 173 ----GIRGISHVIVDEIHER-DINTDFLLVVLRDVVQAYPEVRIVLMSATIDT 220 (235)
T ss_dssp ----CCTTCCEEEECCTTSC-CHHHHHHHHHHHHHHHHCTTSEEEEEECSSCC
T ss_pred ----hhcCCcEEEEECCccC-CcchHHHHHHHHHHHhhCCCCeEEEEecCCCH
Confidence 2345799999999973 1111111 12222 245678999999843
No 93
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.82 E-value=5.8e-09 Score=112.83 Aligned_cols=68 Identities=12% Similarity=0.132 Sum_probs=54.9
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLT 147 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~q 147 (635)
++||||.+.+..+.+.+.. ++.+++..++|+|||+..+..+.. ...+++|++| ..+..|
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~---------------~~~~~~~a~TGtGKT~~~l~p~l~-----~~~~v~i~~pt~~l~~q 62 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRN---------------NFLVALNAPTGSGKTLFSLLVSLE-----VKPKVLFVVRTHNEFYP 62 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHT---------------TCEEEEECCTTSSHHHHHHHHHHH-----HCSEEEEEESSGGGHHH
T ss_pred CCCHHHHHHHHHHHHHHHc---------------CCcEEEECCCCccHHHHHHHHHHh-----CCCeEEEEcCCHHHHHH
Confidence 5899999999887776654 568899999999999887766543 2457899999 778899
Q ss_pred HHHHHHHhc
Q 006698 148 WEEEFKKWG 156 (635)
Q Consensus 148 W~~E~~~~~ 156 (635)
+.+++.++.
T Consensus 63 ~~~~~~~l~ 71 (551)
T 3crv_A 63 IYRDLTKIR 71 (551)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHHHh
Confidence 999998763
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.38 E-value=5.9e-07 Score=97.93 Aligned_cols=72 Identities=17% Similarity=0.207 Sum_probs=55.7
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLT 147 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~q 147 (635)
++||+|++.+..+++.+.. ++.+++..+||+|||+..+..+..+... ...+++|++| .++..|
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~---------------~~~~~~~apTGtGKT~a~l~p~l~~~~~-~~~kvli~t~T~~l~~Q 66 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQK---------------SYGVALESPTGSGKTIMALKSALQYSSE-RKLKVLYLVRTNSQEEQ 66 (620)
T ss_dssp --CHHHHHHHHHHHHHHHH---------------SSEEEEECCTTSCHHHHHHHHHHHHHHH-HTCEEEEEESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHhhhh-cCCeEEEECCCHHHHHH
Confidence 5799999999988776643 5689999999999998887666555433 2357899999 678899
Q ss_pred HHHHHHHhc
Q 006698 148 WEEEFKKWG 156 (635)
Q Consensus 148 W~~E~~~~~ 156 (635)
+.+++.++.
T Consensus 67 i~~el~~l~ 75 (620)
T 4a15_A 67 VIKELRSLS 75 (620)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998763
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.79 E-value=5.6e-05 Score=83.22 Aligned_cols=71 Identities=21% Similarity=0.207 Sum_probs=55.4
Q ss_pred HHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccc
Q 006698 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSM 144 (635)
Q Consensus 66 l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l 144 (635)
+...|=+.|++||..++.. ..=+||..++|+|||.+.+.++..+...+ .++|+++| +..
T Consensus 186 ~~~~LN~~Q~~AV~~al~~------------------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~--~~ILv~a~TN~A 245 (646)
T 4b3f_X 186 FNTCLDTSQKEAVLFALSQ------------------KELAIIHGPPGTGKTTTVVEIILQAVKQG--LKVLCCAPSNIA 245 (646)
T ss_dssp SSTTCCHHHHHHHHHHHHC------------------SSEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEEESSHHH
T ss_pred cCCCCCHHHHHHHHHHhcC------------------CCceEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEcCchHH
Confidence 4457999999999988752 23579999999999999999888877653 57999999 556
Q ss_pred hHHHHHHHHHhc
Q 006698 145 LLTWEEEFKKWG 156 (635)
Q Consensus 145 ~~qW~~E~~~~~ 156 (635)
+.+-.+.+....
T Consensus 246 vD~i~erL~~~~ 257 (646)
T 4b3f_X 246 VDNLVERLALCK 257 (646)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhcC
Confidence 677776676543
No 96
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.57 E-value=0.00035 Score=75.18 Aligned_cols=64 Identities=20% Similarity=0.161 Sum_probs=48.7
Q ss_pred HhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchH
Q 006698 67 RKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLL 146 (635)
Q Consensus 67 ~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~ 146 (635)
...|-+.|++++..+.. .+.+++..++|+|||.++.+++..+... ..++++++|.....
T Consensus 187 ~~~L~~~Q~~Av~~~~~-------------------~~~~~I~G~pGTGKTt~i~~l~~~l~~~--g~~Vl~~ApT~~Aa 245 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAG-------------------HRLVVLTGGPGTGKSTTTKAVADLAESL--GLEVGLCAPTGKAA 245 (574)
T ss_dssp TTTCCHHHHHHHHHHTT-------------------CSEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEESSHHHH
T ss_pred cCCCCHHHHHHHHHHHh-------------------CCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEecCcHHHH
Confidence 45688999999998743 4578999999999998888877665543 35789999977666
Q ss_pred HHHHH
Q 006698 147 TWEEE 151 (635)
Q Consensus 147 qW~~E 151 (635)
....|
T Consensus 246 ~~L~e 250 (574)
T 3e1s_A 246 RRLGE 250 (574)
T ss_dssp HHHHH
T ss_pred HHhHh
Confidence 54444
No 97
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.56 E-value=0.00043 Score=75.27 Aligned_cols=65 Identities=28% Similarity=0.367 Sum_probs=44.8
Q ss_pred cHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh--CCCCCcEEEeCccch-HH
Q 006698 71 FPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL--HPRCRPVIIAPRSML-LT 147 (635)
Q Consensus 71 ~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~--~~~~~~LIv~P~~l~-~q 147 (635)
-+.|+.++..++. ++-+++..++|+|||.++..++..+... ....++++++|..-. .+
T Consensus 151 ~~~Q~~Ai~~~l~-------------------~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~ 211 (608)
T 1w36_D 151 INWQKVAAAVALT-------------------RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAAR 211 (608)
T ss_dssp CCHHHHHHHHHHT-------------------BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHH
T ss_pred CHHHHHHHHHHhc-------------------CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHH
Confidence 3679999887653 4578999999999997777766655543 334477999996554 44
Q ss_pred HHHHHHH
Q 006698 148 WEEEFKK 154 (635)
Q Consensus 148 W~~E~~~ 154 (635)
-.+.+..
T Consensus 212 L~e~~~~ 218 (608)
T 1w36_D 212 LTESLGK 218 (608)
T ss_dssp HHHHHTH
T ss_pred HHHHHHH
Confidence 4444443
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.54 E-value=0.00077 Score=70.83 Aligned_cols=63 Identities=22% Similarity=0.313 Sum_probs=48.7
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLL 146 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~ 146 (635)
.|-+-|++++..+...+..+ .+..+|....|+|||.++.+++..+...+. .++++++|.....
T Consensus 25 ~Ln~~Q~~av~~~~~~i~~~--------------~~~~li~G~aGTGKT~ll~~~~~~l~~~~~-~~il~~a~T~~Aa 87 (459)
T 3upu_A 25 DLTEGQKNAFNIVMKAIKEK--------------KHHVTINGPAGTGATTLTKFIIEALISTGE-TGIILAAPTHAAK 87 (459)
T ss_dssp CCCHHHHHHHHHHHHHHHSS--------------SCEEEEECCTTSCHHHHHHHHHHHHHHTTC-CCEEEEESSHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcC--------------CCEEEEEeCCCCCHHHHHHHHHHHHHhcCC-ceEEEecCcHHHH
Confidence 58899999999887655431 337899999999999888888877665543 5789999976554
No 99
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.50 E-value=0.00027 Score=77.28 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=50.6
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCcc-chH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRS-MLL 146 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~-l~~ 146 (635)
..|-+.|.+|+..++. .+-+++..++|+|||.++..++..+.+. ...++|+++|.+ .+.
T Consensus 179 ~~ln~~Q~~av~~~l~-------------------~~~~li~GppGTGKT~~~~~~i~~l~~~-~~~~ilv~a~tn~A~~ 238 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ-------------------RPLSLIQGPPGTGKTVTSATIVYHLARQ-GNGPVLVCAPSNIAVD 238 (624)
T ss_dssp CCCCHHHHHHHHHHHT-------------------CSEEEEECCTTSCHHHHHHHHHHHHHTS-SSCCEEEEESSHHHHH
T ss_pred CCCCHHHHHHHHHHhc-------------------CCCeEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCcHHHHH
Confidence 3688999999998753 3367899999999999988887666542 456889999954 455
Q ss_pred HHHHHHHHh
Q 006698 147 TWEEEFKKW 155 (635)
Q Consensus 147 qW~~E~~~~ 155 (635)
+-.+.+.+.
T Consensus 239 ~l~~~l~~~ 247 (624)
T 2gk6_A 239 QLTEKIHQT 247 (624)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 555556554
No 100
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.0012 Score=73.73 Aligned_cols=68 Identities=18% Similarity=0.272 Sum_probs=50.9
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCcc-chH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRS-MLL 146 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~-l~~ 146 (635)
..|-+.|.+|+..++. .+-.++-.++|+|||.++..++..+.+. +..++|+++|.+ .+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~-------------------~~~~lI~GppGTGKT~~i~~~i~~l~~~-~~~~ILv~a~tn~A~d 418 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ-------------------RPLSLIQGPPGTGKTVTSATIVYHLSKI-HKDRILVCAPSNVAVD 418 (802)
T ss_dssp CCCCHHHHHHHHHHTT-------------------CSEEEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSHHHHH
T ss_pred ccCCHHHHHHHHHHhc-------------------CCCEEEECCCCCCHHHHHHHHHHHHHhC-CCCeEEEEcCcHHHHH
Confidence 3688999999988743 2357899999999999988887666543 346889999954 556
Q ss_pred HHHHHHHHh
Q 006698 147 TWEEEFKKW 155 (635)
Q Consensus 147 qW~~E~~~~ 155 (635)
+-.+.+.+.
T Consensus 419 ~l~~rL~~~ 427 (802)
T 2xzl_A 419 HLAAKLRDL 427 (802)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 666666654
No 101
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.27 E-value=0.011 Score=64.91 Aligned_cols=71 Identities=11% Similarity=0.087 Sum_probs=51.8
Q ss_pred hHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCC--CCCcEEEeCc
Q 006698 65 DVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHP--RCRPVIIAPR 142 (635)
Q Consensus 65 ~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~--~~~~LIv~P~ 142 (635)
.+-..|-|.|+++|... .+.+++-..+|+|||.+.+.-+..+...+. ..++|+|+++
T Consensus 5 ~~~~~Ln~~Q~~av~~~---------------------~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft 63 (647)
T 3lfu_A 5 YLLDSLNDKQREAVAAP---------------------RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFT 63 (647)
T ss_dssp HHHTTCCHHHHHHHTCC---------------------SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESS
T ss_pred HhhhcCCHHHHHHHhCC---------------------CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEecc
Confidence 45567999999999621 346788888999999999988877776543 3467999984
Q ss_pred -cchHHHHHHHHHhc
Q 006698 143 -SMLLTWEEEFKKWG 156 (635)
Q Consensus 143 -~l~~qW~~E~~~~~ 156 (635)
....+-.+.+.+..
T Consensus 64 ~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 64 NKAAAEMRHRIGQLM 78 (647)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 45566666666653
No 102
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.24 E-value=0.0011 Score=73.96 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=50.0
Q ss_pred hcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCcc-chH
Q 006698 68 KKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRS-MLL 146 (635)
Q Consensus 68 ~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~-l~~ 146 (635)
..|-+.|++|+..++. .+-.++..++|+|||.++..++..+... ...++|+++|.. .+.
T Consensus 355 ~~Ln~~Q~~Av~~~l~-------------------~~~~lI~GppGTGKT~ti~~~i~~l~~~-~~~~ilv~a~tn~A~~ 414 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ-------------------RPLSLIQGPPGTGKTVTSATIVYHLARQ-GNGPVLVCAPSNIAVD 414 (800)
T ss_dssp CCCCHHHHHHHHHHHT-------------------SSEEEEECCTTSCHHHHHHHHHHHHHTT-CSSCEEEEESSHHHHH
T ss_pred cCCCHHHHHHHHHhcc-------------------CCeEEEEcCCCCCHHHHHHHHHHHHHHc-CCCcEEEEcCcHHHHH
Confidence 3588999999998753 3357999999999999988887666543 456889999955 445
Q ss_pred HHHHHHHHh
Q 006698 147 TWEEEFKKW 155 (635)
Q Consensus 147 qW~~E~~~~ 155 (635)
+-.+.+.+.
T Consensus 415 ~l~~~l~~~ 423 (800)
T 2wjy_A 415 QLTEKIHQT 423 (800)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 555555543
No 103
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.23 E-value=0.0035 Score=63.37 Aligned_cols=150 Identities=15% Similarity=0.133 Sum_probs=82.5
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCcc-chHH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRS-MLLT 147 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~-l~~q 147 (635)
.|.|||+..+..+.. .+-+++.-.=+.|||..+.+++....-..+...+++++|.. ....
T Consensus 163 ~L~p~Qk~il~~l~~-------------------~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~ 223 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSS-------------------KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAE 223 (385)
T ss_dssp CCCHHHHHHHHHHHH-------------------SSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHH
T ss_pred CCCHHHHHHHHhhcc-------------------CcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHH
Confidence 689999998876632 23578888889999987776665544444555678898943 3333
Q ss_pred HHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhh
Q 006698 148 WEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG 227 (635)
Q Consensus 148 W~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~ 227 (635)
+.+++..+....+.. +.. ... .... ....+..+..+...+-+ ...
T Consensus 224 vf~~i~~mi~~~P~l-l~~-~~~-~~~~----------------------~~I~f~nGs~i~~lsa~----------~~s 268 (385)
T 2o0j_A 224 VLDRTKQAIELLPDF-LQP-GIV-EWNK----------------------GSIELDNGSSIGAYASS----------PDA 268 (385)
T ss_dssp HHHHHHHHHHHSCTT-TSC-CEE-EECS----------------------SEEEETTSCEEEEEECS----------HHH
T ss_pred HHHHHHHHHHhChHh-hhh-hhc-cCCc----------------------cEEEeCCCCEEEEEECC----------CCC
Confidence 446666653221110 000 000 0000 00011122223333211 112
Q ss_pred hhccCCCEEEEeCCCcCCCcccHHHHHHHhc-c--cCcEEEEecccCCC
Q 006698 228 ILLDLPGLFVFDEGHTPRNDDTCMFKALSRI-K--TRRRIILSGTPFQN 273 (635)
Q Consensus 228 ~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l-~--~~~~l~LTgTP~~n 273 (635)
+....++++|+||+|.+++. ...+.++... . ...++++++||-..
T Consensus 269 lrG~~~~~viiDE~a~~~~~-~el~~al~~~ls~~~~~kiiiiSTP~g~ 316 (385)
T 2o0j_A 269 VRGNSFAMIYIEDCAFIPNF-HDSWLAIQPVISSGRRSKIIITTTPNGL 316 (385)
T ss_dssp HHTSCCSEEEEESGGGSTTH-HHHHHHHHHHHHSTTCCEEEEEECCCSS
T ss_pred ccCCCCCEEEechhhhcCCC-HHHHHHHHHHhhcCCCCcEEEEeCCCCc
Confidence 33345789999999999863 2344444432 2 35788999999655
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.08 E-value=0.0057 Score=66.30 Aligned_cols=150 Identities=15% Similarity=0.093 Sum_probs=84.0
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHH
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLT 147 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~q 147 (635)
.|.|||+..+..++. .+-+++.-.-|.|||..+.+++....-..+..++++++| ......
T Consensus 163 ~l~p~Q~~i~~~l~~-------------------~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~ 223 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSS-------------------KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAE 223 (592)
T ss_dssp CCCHHHHHHHHHHHH-------------------CSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHH
T ss_pred cCCHHHHHHHHhhcc-------------------ccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHH
Confidence 589999988876632 345788889999999877666555544455557799999 334444
Q ss_pred HHHHHHHhcCCCcccccCCCCCcCcccchhhHhHhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhh
Q 006698 148 WEEEFKKWGIDIPFYNLNKPELSGKENNGAVALMDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSG 227 (635)
Q Consensus 148 W~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~ 227 (635)
....+..+....+...-.. ...... .. ..+..+..+...+-+ ...
T Consensus 224 ~~~~i~~~i~~~p~~~~~~---~~~~~~---------------------~~-i~~~nGs~i~~~s~~----------~~~ 268 (592)
T 3cpe_A 224 VLDRTKQAIELLPDFLQPG---IVEWNK---------------------GS-IELDNGSSIGAYASS----------PDA 268 (592)
T ss_dssp HHHHHHHHHTTSCTTTSCC---EEEECS---------------------SE-EEETTSCEEEEEECC----------HHH
T ss_pred HHHHHHHHHHhChHhhccc---cccCCc---------------------cE-EEecCCCEEEEEeCC----------CCC
Confidence 5566766643322100000 000000 00 011122222222211 112
Q ss_pred hhccCCCEEEEeCCCcCCCcccHHHHHHHhc-c--cCcEEEEecccCCC
Q 006698 228 ILLDLPGLFVFDEGHTPRNDDTCMFKALSRI-K--TRRRIILSGTPFQN 273 (635)
Q Consensus 228 ~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l-~--~~~~l~LTgTP~~n 273 (635)
+....++++|+||+|..++.. ..+.++... . ...++++++||-..
T Consensus 269 lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~~~~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 269 VRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISSGRRSKIIITTTPNGL 316 (592)
T ss_dssp HHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHSSSSCCEEEEEECCCTT
T ss_pred ccCCCcceEEEehhccCCchh-HHHHHHHHHhccCCCceEEEEeCCCCc
Confidence 333457999999999997742 455555443 2 34789999999554
No 105
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.91 E-value=0.0017 Score=58.72 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=27.6
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCc
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPR 142 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~ 142 (635)
-.++..+||+|||..++..+..+...+ .+++++.|.
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g--~~v~~~~~~ 40 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGK--KKVAVFKPK 40 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--CEEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeec
Confidence 457899999999988888876665433 467888876
No 106
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.77 E-value=0.0076 Score=55.12 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=26.9
Q ss_pred EEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCc
Q 006698 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPR 142 (635)
Q Consensus 107 iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~ 142 (635)
++..+||+|||..++..+..+... ..+++|+.|.
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~--g~kVli~k~~ 65 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFA--KQHAIVFKPC 65 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEECC
T ss_pred EEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEec
Confidence 479999999999888888666443 4578999884
No 107
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.42 E-value=0.0052 Score=60.69 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=24.1
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHhC
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLH 131 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~~ 131 (635)
.+.+.+|..++|+|||..|-+++..+...+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~ 95 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLG 95 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 355789999999999999988887765543
No 108
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.41 E-value=0.017 Score=57.64 Aligned_cols=48 Identities=23% Similarity=0.425 Sum_probs=38.4
Q ss_pred ccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 70 MFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 70 L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
++|+|.+.+..+.+.+..| ..++..++..+.|+|||..|.+++..+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~------------~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAG------------RGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTT------------CCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCchHHHHHHHHHHHHcC------------CcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 6899999999888776543 12446899999999999999999877653
No 109
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.39 E-value=0.011 Score=53.57 Aligned_cols=37 Identities=11% Similarity=0.030 Sum_probs=28.5
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCc
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPR 142 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~ 142 (635)
.=.++..+||+|||..++..+..+.. ...+++++.|.
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~--~g~kV~v~k~~ 45 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKI--AKQKIQVFKPE 45 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHH--CCCEEEEEEec
Confidence 34678899999999888888766643 34578888875
No 110
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.28 E-value=0.01 Score=60.73 Aligned_cols=111 Identities=17% Similarity=0.061 Sum_probs=67.0
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHHHHHHHHHhcCCCcccccCCCCCcCcccchhhHhH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVALM 181 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 181 (635)
.+-.++....|+|||......+. .++.||++| ..+...|.+.+.+... .
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~-------~~~~lVlTpT~~aa~~l~~kl~~~~~---------------~-------- 210 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVN-------FEEDLILVPGRQAAEMIRRRANASGI---------------I-------- 210 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCC-------TTTCEEEESCHHHHHHHHHHHTTTSC---------------C--------
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc-------cCCeEEEeCCHHHHHHHHHHhhhcCc---------------c--------
Confidence 44568899999999976655541 256799999 6777888887753210 0
Q ss_pred hhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhcccC
Q 006698 182 DNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTR 261 (635)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~ 261 (635)
.....-+.|++.+...... ......++||||||..+- .......+..++.
T Consensus 211 ----------------------~~~~~~V~T~dsfL~~~~~-----~~~~~~d~liiDE~sm~~--~~~l~~l~~~~~~- 260 (446)
T 3vkw_A 211 ----------------------VATKDNVRTVDSFLMNYGK-----GARCQFKRLFIDEGLMLH--TGCVNFLVEMSLC- 260 (446)
T ss_dssp ----------------------CCCTTTEEEHHHHHHTTTS-----SCCCCCSEEEEETGGGSC--HHHHHHHHHHTTC-
T ss_pred ----------------------ccccceEEEeHHhhcCCCC-----CCCCcCCEEEEeCcccCC--HHHHHHHHHhCCC-
Confidence 0111235677665432110 001126999999998662 2222223333344
Q ss_pred cEEEEecccCCC
Q 006698 262 RRIILSGTPFQN 273 (635)
Q Consensus 262 ~~l~LTgTP~~n 273 (635)
.+++|.|-|-|-
T Consensus 261 ~~vilvGD~~Ql 272 (446)
T 3vkw_A 261 DIAYVYGDTQQI 272 (446)
T ss_dssp SEEEEEECTTSC
T ss_pred CEEEEecCcccc
Confidence 899999998663
No 111
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.24 E-value=0.0059 Score=56.73 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=28.4
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCc
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPR 142 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~ 142 (635)
+.-.++..+||+|||..++.++..+... ..+++++.|.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~--g~kVli~~~~ 49 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA--DVKYLVFKPK 49 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEEEC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEEec
Confidence 3345788999999999998888766543 3467888773
No 112
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.19 E-value=0.014 Score=53.86 Aligned_cols=37 Identities=11% Similarity=0.053 Sum_probs=27.7
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCc
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPR 142 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~ 142 (635)
.=-++..+||+|||..++..+..+. +...+++|+-|.
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~--~~g~kvli~kp~ 56 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQ--IAQYKCLVIKYA 56 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH--TTTCCEEEEEET
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEeec
Confidence 3457789999999988888776553 445678888873
No 113
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.06 E-value=0.023 Score=56.35 Aligned_cols=28 Identities=32% Similarity=0.129 Sum_probs=23.0
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHh
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKL 130 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~ 130 (635)
+++.+|..++|+|||..+-+++..+...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 5689999999999998888887666543
No 114
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.04 E-value=0.02 Score=59.49 Aligned_cols=44 Identities=25% Similarity=0.196 Sum_probs=31.6
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLL 146 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~ 146 (635)
.++.+|..++|+|||..+-++...+....+..+++.+-...+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~ 173 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN 173 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH
Confidence 56899999999999998888887776665555555554444333
No 115
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.02 E-value=0.057 Score=48.20 Aligned_cols=47 Identities=26% Similarity=0.316 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHH
Q 006698 72 PHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 72 p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
+.|.+++..+.+.... .....+.+.+|..++|+|||..+-+++..+.
T Consensus 17 ~~~~~~~~~~~~~~~~----------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHN----------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHHHS----------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh----------ccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6788888877543321 1112356889999999999988888776654
No 116
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.81 E-value=0.051 Score=48.55 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=22.2
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
.++++|..++|+|||..+-+++..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 567899999999999988888766543
No 117
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.67 E-value=0.014 Score=58.04 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=21.7
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHH
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
..+|++|..++|+|||..|-+++...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 35689999999999999988887553
No 118
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.023 Score=57.43 Aligned_cols=49 Identities=22% Similarity=0.352 Sum_probs=37.1
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHH
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKK 154 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~ 154 (635)
..++|+||..++|+|||+.|=+++... ..+.+.|....++..|..|-.+
T Consensus 180 ~~prGvLL~GPPGTGKTllAkAiA~e~-----~~~f~~v~~s~l~sk~vGese~ 228 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLARAVAHHT-----DCKFIRVSGAELVQKYIGEGSR 228 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHHHHHHHHH-----TCEEEEEEGGGGSCSSTTHHHH
T ss_pred CCCCceEEeCCCCCCHHHHHHHHHHhh-----CCCceEEEhHHhhccccchHHH
Confidence 457899999999999999999988664 3345666667777777655544
No 119
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.50 E-value=0.042 Score=49.32 Aligned_cols=38 Identities=13% Similarity=0.094 Sum_probs=27.8
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCc
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPR 142 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~ 142 (635)
+.=-++..+||+|||...+-.+..+...+ .+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~--~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQ--YKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTT--CCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEccc
Confidence 33457899999999977777776665443 578888874
No 120
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.50 E-value=0.096 Score=46.86 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=22.5
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
.++++|..++|+|||..+-+++..+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 567999999999999998888766544
No 121
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.43 E-value=0.049 Score=49.68 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=25.9
Q ss_pred eEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCc
Q 006698 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPR 142 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~ 142 (635)
-++..+||+|||..++-.+..+... ..+++|+-|.
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~~--g~kvli~kp~ 65 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIYA--KQKVVVFKPA 65 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCceEEEEec
Confidence 4788999999997777776555443 3567888884
No 122
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.37 E-value=0.015 Score=58.48 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.2
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHH
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
..+|++|..++|+|||..|-+++..+
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 35689999999999999998887654
No 123
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.35 E-value=0.11 Score=47.65 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=21.0
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
.+.+|..+.|+|||..+-+++..+..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 45999999999999888887765543
No 124
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.35 E-value=0.018 Score=52.42 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=23.9
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHHhC--CCC-CcEEEeC
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMKLH--PRC-RPVIIAP 141 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~~~--~~~-~~LIv~P 141 (635)
-.++...+|+|||..|...+......+ ..+ +++.+|.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~ 46 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTN 46 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEEC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEec
Confidence 457889999999998887664432111 223 5666664
No 125
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.27 E-value=0.067 Score=54.35 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=22.8
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHh
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKL 130 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~ 130 (635)
++.++|..+.|+|||..+-+++..+...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4579999999999999988887665443
No 126
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.11 E-value=0.042 Score=51.58 Aligned_cols=28 Identities=14% Similarity=0.018 Sum_probs=22.9
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHh
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKL 130 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~ 130 (635)
+++.+|..++|+|||..+-+++..+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~ 79 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARANEL 79 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5689999999999999888887665443
No 127
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.96 E-value=0.031 Score=57.35 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=34.9
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHH
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFK 153 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~ 153 (635)
..++|+||..++|+|||+.|=+++..+ ..+.+.|....++..|..|-.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~-----~~~~~~v~~s~l~sk~~Gese 260 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATI-----GANFIFSPASGIVDKYIGESA 260 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH-----TCEEEEEEGGGTCCSSSSHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEehhhhccccchHHH
Confidence 457899999999999999999988665 334455555666666555543
No 128
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.95 E-value=0.047 Score=52.09 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=21.5
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHH
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
..++++|..++|+|||..|-+++..+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999998888877543
No 129
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.82 E-value=0.043 Score=55.70 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=36.5
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHH
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKK 154 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~ 154 (635)
..++|+||..++|+|||+.|-+++... ..+.+.|....++..|..|-.+
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~-----~~~fi~v~~s~l~sk~vGesek 262 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQT-----SATFLRIVGSELIQKYLGDGPR 262 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHH-----TCEEEEEESGGGCCSSSSHHHH
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHh-----CCCEEEEEHHHhhhccCchHHH
Confidence 447899999999999999999988665 3345666667777666555443
No 130
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.55 E-value=0.034 Score=55.06 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=21.8
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHH
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
..+|++|..++|+|||..|-+++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 35789999999999999988887543
No 131
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.50 E-value=0.15 Score=46.90 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=30.9
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcE--EEeCccchHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPV--IIAPRSMLLTWE 149 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~L--Iv~P~~l~~qW~ 149 (635)
-+.++....|.|||..|+.++..+...+. +++ .+-|-.-...|.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~--~V~v~d~D~q~~~~~~a 52 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGV--RVMAGVVETHGRAETEA 52 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTC--CEEEEECCCTTCHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCC--CEEEEEeCCCCChhHHH
Confidence 36899999999999999999988776543 443 333444444554
No 132
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.49 E-value=0.077 Score=51.71 Aligned_cols=43 Identities=12% Similarity=0.003 Sum_probs=29.7
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHH
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTW 148 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW 148 (635)
..+.|++|..++|+|||..|-+++..+ ..+++.+....+...|
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l-----~~~~i~v~~~~l~~~~ 76 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM-----GINPIMMSAGELESGN 76 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH-----TCCCEEEEHHHHHCC-
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEeHHHhhhcc
Confidence 346789999999999999998888665 3344555444444433
No 133
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.45 E-value=0.047 Score=55.97 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=35.1
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHH
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFK 153 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~ 153 (635)
...+|+||..++|+|||+.|-+++... ..+.+.|....++..|..|-.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~-----~~~fi~vs~s~L~sk~vGese 288 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRT-----DATFIRVIGSELVQKYVGEGA 288 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHH-----TCEEEEEEGGGGCCCSSSHHH
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc-----CCCeEEEEhHHhhcccCCHHH
Confidence 457899999999999999998888654 334455555667666655444
No 134
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.42 E-value=0.083 Score=48.12 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=21.9
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
.+.+|..++|+|||..+-+++.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999998887766543
No 135
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.37 E-value=0.098 Score=51.75 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=27.6
Q ss_pred CCEEEEeCCCcCC-Cc-ccHHHHHHHhcccCcEEEEecccCCCChhhHHH
Q 006698 233 PGLFVFDEGHTPR-ND-DTCMFKALSRIKTRRRIILSGTPFQNNFQELEN 280 (635)
Q Consensus 233 ~~~vIvDEaH~~k-n~-~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ 280 (635)
..+||+||+|.+. .. ...+.+.+.......++++|+++...-...+.+
T Consensus 106 ~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s 155 (324)
T 3u61_B 106 QKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS 155 (324)
T ss_dssp EEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH
T ss_pred CeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh
Confidence 4789999999985 21 112223333334566788877765433333443
No 136
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.27 E-value=0.69 Score=47.85 Aligned_cols=50 Identities=20% Similarity=0.113 Sum_probs=35.7
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFK 153 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~ 153 (635)
+.-++|+..+|+|||..++.++...... ...+++++..-.-..++...+.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~~~~~l~~R~~ 249 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEMPAAQLTLRMM 249 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSSCHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCCCHHHHHHHHH
Confidence 4557999999999999998888766542 2347788877555556555543
No 137
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.27 E-value=0.3 Score=49.16 Aligned_cols=46 Identities=28% Similarity=0.384 Sum_probs=33.7
Q ss_pred cHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHH
Q 006698 71 FPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 71 ~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
.+.+++++..+.+....|. ..+++.+|..++|+|||..|-+++..+
T Consensus 49 ~~~~~~~l~~l~~~~~~~~-----------~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGK-----------IAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTC-----------CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCC-----------CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4667777777766655431 124689999999999999988887665
No 138
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=94.15 E-value=0.13 Score=55.92 Aligned_cols=107 Identities=14% Similarity=0.119 Sum_probs=60.7
Q ss_pred HHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEc-cCCcc
Q 006698 427 LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS-TKACC 505 (635)
Q Consensus 427 l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~s-t~~~~ 505 (635)
+.+++...+| .++||..+-..++.+.+.|. .+ +.+ ...+++..+|..++++|. +. -.||+.. ....+
T Consensus 440 i~~l~~~~~g-~~lvlF~Sy~~l~~v~~~l~-~~----~~~---~~q~~~~~~~~~ll~~f~-~~--~~vL~~v~~gsf~ 507 (620)
T 4a15_A 440 IEDIILKVKK-NTIVYFPSYSLMDRVENRVS-FE----HMK---EYRGIDQKELYSMLKKFR-RD--HGTIFAVSGGRLS 507 (620)
T ss_dssp HHHHHHHHCS-CEEEEESCHHHHHHHTSSCC-SC----CEE---CCTTCCSHHHHHHHHHHT-TS--CCEEEEETTSCC-
T ss_pred HHHHHHhCCC-CEEEEeCCHHHHHHHHHHHH-hc----chh---ccCCCChhHHHHHHHHhc-cC--CcEEEEEecCcee
Confidence 3444443355 46666666666666666554 11 222 333444568999999999 32 3355532 35899
Q ss_pred cccccc--cCCeEEEeCCCCCh-------------------h----------hHHhhhhhhhhcCCcceEE
Q 006698 506 EGINLV--GASRVVLLDVVWNP-------------------F----------VERQAISRAYRLGQKRVVH 545 (635)
Q Consensus 506 ~GlnL~--~a~~vi~~d~~wnp-------------------~----------~~~Qa~gR~~R~GQ~~~V~ 545 (635)
||||+. .+..||+.-+|+-+ - ...|++||+.|--+.+-|.
T Consensus 508 EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v 578 (620)
T 4a15_A 508 EGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGAC 578 (620)
T ss_dssp -------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEE
T ss_pred ccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEE
Confidence 999998 57888888777532 1 1369999999966655443
No 139
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.95 E-value=0.081 Score=53.96 Aligned_cols=41 Identities=22% Similarity=0.288 Sum_probs=25.7
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTW 148 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW 148 (635)
.++++|..++|+|||..|-+++... ..+.+.|.+..+...|
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~-----~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES-----NATFFNISAASLTSKY 188 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT-----TCEEEEECSCCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh-----cCcEEEeeHHHhhccc
Confidence 5689999999999998888776432 2233444445554433
No 140
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.84 E-value=0.62 Score=48.36 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=34.8
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHH
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEF 152 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~ 152 (635)
.+.-++|+.++|+|||..++.++....... ..+++++..-.-..+....+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~s~~~l~~r~ 251 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEMSAQQLVMRM 251 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSSCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCCCHHHHHHHH
Confidence 355689999999999999988887665432 34678887644444544443
No 141
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.74 E-value=0.23 Score=48.89 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=20.5
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
..++..+.|+|||..+-+++..+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 589999999999998888876653
No 142
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.62 E-value=0.028 Score=54.51 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=20.9
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHH
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
..++.+|..++|+|||..|-+++..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3678999999999999888777644
No 143
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.50 E-value=0.076 Score=55.15 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.2
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHH
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
..+|.+|..++|+|||..|-+++..
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999988887754
No 144
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.91 E-value=0.14 Score=43.69 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=18.0
Q ss_pred CCceEEeCCCCchHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFL 124 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i 124 (635)
..+++|..++|+|||..|-++.
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGC
T ss_pred CCcEEEECCCCccHHHHHHHHH
Confidence 5689999999999997765544
No 145
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.84 E-value=0.08 Score=53.24 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.0
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHH
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
..++++|..++|+|||..|-+++..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3668999999999999988887644
No 146
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.83 E-value=0.052 Score=53.15 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.1
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHH
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
.+++++|..++|+|||..|-+++..
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 3678999999999999988877754
No 147
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.74 E-value=0.98 Score=46.60 Aligned_cols=49 Identities=14% Similarity=-0.006 Sum_probs=36.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFK 153 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~ 153 (635)
+.-++|+..+|+|||..++.++...... ..+++++..-.-..|....+.
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms~~ql~~R~~ 245 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMGKKENIKRLI 245 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSCTTHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHH
Confidence 4568999999999999999888776654 457788887554455555444
No 148
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.55 E-value=1.5 Score=42.98 Aligned_cols=50 Identities=14% Similarity=-0.012 Sum_probs=36.2
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKK 154 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~ 154 (635)
+.-++|+..+|+|||..++.++......+ .+++++..-.-..+....+..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~s~~~l~~R~~~ 117 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEMGKKENIKRLIV 117 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSSCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCCCHHHHHHHHHH
Confidence 45589999999999999888886655433 577888875555555555543
No 149
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.55 E-value=0.63 Score=45.35 Aligned_cols=24 Identities=13% Similarity=0.069 Sum_probs=19.9
Q ss_pred CCceEEeCCCCchHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
....|+..+.|+|||..+.+++..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 347899999999999888887753
No 150
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.41 E-value=0.17 Score=50.01 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=35.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEF 152 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~ 152 (635)
+.=.+|+..+|+|||..++.++..... ...+++++..-.-..|....+
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlEms~~ql~~Rl 93 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLEMSAEQLALRA 93 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESSSCHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCCCHHHHHHHH
Confidence 445899999999999999888876655 345778888755555554444
No 151
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.23 E-value=0.096 Score=53.65 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=37.2
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHH
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKK 154 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~ 154 (635)
..++|+||..++|+|||+.|=+++... ..+.+.|....++..|..|-.+
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~-----~~~f~~v~~s~l~~~~vGese~ 261 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQT-----NATFLKLAAPQLVQMYIGEGAK 261 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH-----TCEEEEEEGGGGCSSCSSHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHh-----CCCEEEEehhhhhhcccchHHH
Confidence 447899999999999999998888664 3355666667777777655544
No 152
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.21 E-value=0.32 Score=48.48 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=20.8
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
.+.+|..++|+|||..+-+++..+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999988888876653
No 153
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.74 E-value=0.44 Score=50.44 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
.++.+|..++|+|||..|-+++..+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999888877554
No 154
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.64 E-value=1.8 Score=43.50 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=19.4
Q ss_pred ceEEeCCCCchHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
.++|..+.|+|||..+-+++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999998887776554
No 155
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.60 E-value=0.18 Score=49.09 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=20.5
Q ss_pred CCceEEeCCCCchHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
.++.+|..++|+|||..|-+++..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 568999999999999888777643
No 156
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=91.53 E-value=0.26 Score=48.28 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=20.5
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
..++..+.|+|||..+-+++..+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc
Confidence 599999999999998888876653
No 157
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.51 E-value=0.58 Score=47.18 Aligned_cols=28 Identities=21% Similarity=0.320 Sum_probs=22.8
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
.+++++|..++|+|||..+-+++..+..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3668999999999999888887766543
No 158
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.40 E-value=0.47 Score=46.52 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=20.3
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
..+|..+.|+|||..+-+++..+.
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 489999999999988888876653
No 159
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=91.32 E-value=0.12 Score=54.29 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=20.3
Q ss_pred CCCceEEeCCCCchHHHHHHHHHH
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~ 125 (635)
...+++|..++|+|||..|-++..
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHH
Confidence 356899999999999998877754
No 160
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.20 E-value=0.35 Score=44.92 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=20.1
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
+..+|..+.|+|||..+-+++..+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3679999999999988877775543
No 161
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.19 E-value=0.33 Score=50.23 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=19.2
Q ss_pred CceEEeCCCCchHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
.+.||..++|+|||..|-++...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 57899999999999887776644
No 162
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.18 E-value=0.86 Score=44.23 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=34.1
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLT 147 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~q 147 (635)
-.+++.++|+|||..++.++....+.++.+++++|.....+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH
Confidence 4689999999999999999888777655667888888544443
No 163
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.17 E-value=0.016 Score=42.18 Aligned_cols=32 Identities=16% Similarity=0.420 Sum_probs=25.7
Q ss_pred ccccCCCCCCCCcchhhhhhcCCCCCcccccc
Q 006698 4 IKDIDPPFATSPSRRAEWREYNNVDPSFLDDL 35 (635)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (635)
..+||+||..+||+.+|||..+++.+..++++
T Consensus 32 ~~eYLVKWkgl~y~e~TWE~~~~l~~~~I~~f 63 (68)
T 2epb_A 32 VTHYLVKWCSLPYEESTWELEEDVDPAKVKEF 63 (68)
T ss_dssp EEEEEEECTTSCGGGCCEEETTTSCHHHHHHH
T ss_pred ceEEEEEEcCCChhcCccccchhcCHHHHHHH
Confidence 45799999999999999999987755544443
No 164
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.15 E-value=1.5 Score=41.52 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=19.0
Q ss_pred CCceEEeCCCCchHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~ 125 (635)
..+++|..++|+|||..|-++..
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHH
Confidence 46899999999999987766653
No 165
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.11 E-value=0.69 Score=46.58 Aligned_cols=29 Identities=31% Similarity=0.305 Sum_probs=23.2
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHh
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKL 130 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~ 130 (635)
.++.++|..+.|+|||..+-+++..+...
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 35689999999999998888877665544
No 166
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.02 E-value=1 Score=46.14 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=26.3
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA 140 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~ 140 (635)
+.-.+++...|+|||.++..++..+... .+++++++
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~--G~kVllv~ 132 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR--GYKVGLVA 132 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEe
Confidence 4456888999999998888887666543 34676655
No 167
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.00 E-value=0.49 Score=47.00 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.3
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
..++..+.|+|||..+-+++..+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 389999999999999888886653
No 168
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=90.59 E-value=1.3 Score=45.32 Aligned_cols=37 Identities=14% Similarity=0.167 Sum_probs=27.6
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
+.-.+++...|+|||.++..++..+.+. ..++++|+-
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~--G~kVllv~~ 136 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKR--GYKVGVVCS 136 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEEC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHC--CCeEEEEeC
Confidence 4457888999999999988888766543 456776663
No 169
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.54 E-value=0.72 Score=46.29 Aligned_cols=24 Identities=21% Similarity=0.426 Sum_probs=20.0
Q ss_pred CceEEeCCCCchHHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
+..++..+.|+|||..+-+++..+
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357999999999999888877655
No 170
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.45 E-value=1.3 Score=49.26 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=21.7
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
..+.+|..++|+|||..+-+++..+.
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 56899999999999988888776543
No 171
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=89.76 E-value=0.69 Score=48.06 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=20.4
Q ss_pred CCceEEeCCCCchHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
++|++|..++|+|||..+=+++..
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999888777653
No 172
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=89.67 E-value=0.54 Score=53.20 Aligned_cols=27 Identities=30% Similarity=0.413 Sum_probs=22.2
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
.++.+|..++|+|||..+-+++..+..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 557899999999999988888766543
No 173
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=89.60 E-value=1.3 Score=37.81 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=21.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
+...+|..+.|+|||..+-+++..+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56789999999999988777775554
No 174
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.46 E-value=0.16 Score=51.94 Aligned_cols=48 Identities=19% Similarity=0.233 Sum_probs=35.0
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHH
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFK 153 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~ 153 (635)
..++|+||..++|+|||..|=+++..+ ..+.+.|....++..|..+-.
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~-----~~~~~~v~~~~l~~~~~Ge~e 251 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST-----KAAFIRVNGSEFVHKYLGEGP 251 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH-----TCEEEEEEGGGTCCSSCSHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEecchhhccccchhH
Confidence 457899999999999999999988665 334455555666666654444
No 175
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=89.41 E-value=2.5 Score=41.02 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=19.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~ 125 (635)
..+++|..++|+|||..|-++..
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEEEECCCCchHHHHHHHHHH
Confidence 56899999999999988766653
No 176
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=89.17 E-value=0.42 Score=52.59 Aligned_cols=67 Identities=15% Similarity=0.221 Sum_probs=48.0
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh-C-CCCCcEEEeC-ccch
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL-H-PRCRPVIIAP-RSML 145 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~-~-~~~~~LIv~P-~~l~ 145 (635)
.|-|-|+++|... .+.+++....|+|||.+.+.-+..+... + +..++|+|+. +...
T Consensus 2 ~L~~~Q~~av~~~---------------------~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa 60 (673)
T 1uaa_A 2 RLNPGQQQAVEFV---------------------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAA 60 (673)
T ss_dssp CCCHHHHHHHHCC---------------------SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHH
T ss_pred CCCHHHHHHHhCC---------------------CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHH
Confidence 4779999999642 4467888899999999988877777665 2 3346788887 4455
Q ss_pred HHHHHHHHHhc
Q 006698 146 LTWEEEFKKWG 156 (635)
Q Consensus 146 ~qW~~E~~~~~ 156 (635)
..-++.+.+..
T Consensus 61 ~em~~Rl~~~l 71 (673)
T 1uaa_A 61 REMKERVGQTL 71 (673)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHc
Confidence 55566666553
No 177
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=88.46 E-value=5 Score=35.85 Aligned_cols=36 Identities=14% Similarity=0.035 Sum_probs=27.6
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA 140 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~ 140 (635)
.+..++.-..|-|||-.|++++.... +...+++|+-
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~--g~G~rV~~vQ 63 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV--GHGKNVGVVQ 63 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEE
Confidence 46789999999999999998876554 3445777773
No 178
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=88.19 E-value=0.063 Score=38.24 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=20.0
Q ss_pred cccCCCCCCCCcchhhhhhcCC
Q 006698 5 KDIDPPFATSPSRRAEWREYNN 26 (635)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~ 26 (635)
.+||+||..+||+.++||..+.
T Consensus 28 ~eYLVKWkgl~y~e~TWE~~~~ 49 (64)
T 2ee1_A 28 VHYLIKWRDLPYDQASWESEDV 49 (64)
T ss_dssp EEEEECCTTSCTTTCEEEETTC
T ss_pred EEEEEEEcCCCcccCcccCCcc
Confidence 4789999999999999999983
No 179
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=88.04 E-value=0.44 Score=52.76 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=31.1
Q ss_pred CCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHH
Q 006698 100 TGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFK 153 (635)
Q Consensus 100 ~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~ 153 (635)
...++|+||..++|+|||..|=+++..+ ..+.+.|-...++..|..+-+
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~el-----g~~~~~v~~~~l~sk~~gese 283 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLINGPEIMSKLAGESE 283 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHTTT-----TCEEEEEEHHHHHSSCTTHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHh-----CCeEEEEEhHHhhcccchHHH
Confidence 3457899999999999998887776332 223333333555555444433
No 180
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=87.75 E-value=1.8 Score=44.93 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=42.9
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHHHHHHHHHhcCCCcccccC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLTWEEEFKKWGIDIPFYNLN 165 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qW~~E~~~~~~~~~v~~~~ 165 (635)
+....|..-+|+|||+++..++.. ..+++||||| .....+|.+++..|.|+. |..+.
T Consensus 14 ~~~~~l~g~~gs~ka~~~a~l~~~-----~~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~fp 71 (483)
T 3hjh_A 14 GEQRLLGELTGAACATLVAEIAER-----HAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLA 71 (483)
T ss_dssp TCEEEEECCCTTHHHHHHHHHHHH-----SSSCEEEEESSHHHHHHHHHHHHHTCSSC-EEECC
T ss_pred CCeEEEeCCCchHHHHHHHHHHHH-----hCCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEEe
Confidence 345688999999999887776633 2457899999 567789999999987753 44443
No 181
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=86.93 E-value=0.88 Score=50.38 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=47.8
Q ss_pred hHHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC--CCCCcEEEeCc
Q 006698 65 DVRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH--PRCRPVIIAPR 142 (635)
Q Consensus 65 ~l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~--~~~~~LIv~P~ 142 (635)
.+-..|-|.|+++|... .+.+++-...|+|||.+.+.-+..+.... +..++|+|+..
T Consensus 7 ~~l~~Ln~~Q~~av~~~---------------------~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFT 65 (724)
T 1pjr_A 7 QLLAHLNKEQQEAVRTT---------------------EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFT 65 (724)
T ss_dssp HHHTTSCHHHHHHHHCC---------------------SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESS
T ss_pred hHHhhCCHHHHHHHhCC---------------------CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEecc
Confidence 34567999999999642 34678888889999999888887777643 23456999884
Q ss_pred c-chHHHHHHHHH
Q 006698 143 S-MLLTWEEEFKK 154 (635)
Q Consensus 143 ~-l~~qW~~E~~~ 154 (635)
. ....-++.+.+
T Consensus 66 nkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 66 NKAAREMRERVQS 78 (724)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4 33344444444
No 182
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.72 E-value=1.9 Score=42.90 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=19.4
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
..++..+.|+|||..+-+++..+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 389999999999988777765443
No 183
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=86.69 E-value=1.4 Score=42.83 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=20.2
Q ss_pred CceEEeCCCCchHHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
...+|..++|+|||..|-++...+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 368999999999999888877655
No 184
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=86.68 E-value=2.5 Score=42.84 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=20.9
Q ss_pred CCceEE--eCCCCchHHHHHHHHHHHHHH
Q 006698 103 GNGCII--SHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 103 ~~g~iL--ad~~GlGKT~~ai~~i~~~~~ 129 (635)
++.++| ..+.|+|||..+-.++..+..
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 446778 899999999888887765543
No 185
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.22 E-value=1.2 Score=40.69 Aligned_cols=43 Identities=14% Similarity=-0.035 Sum_probs=28.7
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCcc--chHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRS--MLLTWEE 150 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~--l~~qW~~ 150 (635)
+.-++|+.+.|+|||..+..++. .. ..+++++.-.. -..+|.+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~--~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LS--GKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HH--CSEEEEEESSCCCCHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---Hc--CCcEEEEECCCCCCHHHHHH
Confidence 55679999999999988887775 22 34566666433 3344544
No 186
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=86.18 E-value=1.5 Score=43.91 Aligned_cols=45 Identities=22% Similarity=0.100 Sum_probs=34.4
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWE 149 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~ 149 (635)
+.-.+|+.++|+|||..|+.++...... ..++++|.......+|.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~~ 118 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPVY 118 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHHH
Confidence 5568999999999999999988776543 34778888766666653
No 187
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=84.98 E-value=2.6 Score=46.81 Aligned_cols=103 Identities=9% Similarity=0.024 Sum_probs=75.0
Q ss_pred CccccchHHHHHHHH-Hhc-CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCc
Q 006698 417 DPEAGIKTRFLLILL-ELS-TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494 (635)
Q Consensus 417 ~~~~s~K~~~l~~~l-~~~-~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~ 494 (635)
.+..++|.......+ ... .+.+++|.+.....+.-+.+.+.+.+.. .|+++..++|+++..+|...++...+ +++
T Consensus 396 a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~-~gi~v~~l~G~~~~~~r~~~~~~l~~--g~~ 472 (780)
T 1gm5_A 396 GDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSK-FNIHVALLIGATTPSEKEKIKSGLRN--GQI 472 (780)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTC-SSCCEEECCSSSCHHHHHHHHHHHHS--SCC
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhh-cCceEEEEeCCCCHHHHHHHHHHHhc--CCC
Confidence 355678876544333 222 6789999999988777777777665532 27899999999999999999999887 557
Q ss_pred EEEEEccCCcccccccccCCeEEEeCCC
Q 006698 495 RIMLASTKACCEGINLVGASRVVLLDVV 522 (635)
Q Consensus 495 ~vll~st~~~~~GlnL~~a~~vi~~d~~ 522 (635)
.|++++.......+++...+.||+=+.+
T Consensus 473 ~IvVgT~~ll~~~~~~~~l~lVVIDEaH 500 (780)
T 1gm5_A 473 DVVIGTHALIQEDVHFKNLGLVIIDEQH 500 (780)
T ss_dssp CEEEECTTHHHHCCCCSCCCEEEEESCC
T ss_pred CEEEECHHHHhhhhhccCCceEEecccc
Confidence 7888766556566777778777775544
No 188
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=84.96 E-value=2.3 Score=45.88 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=34.7
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCc
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPR 142 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~ 142 (635)
.+-+.|.+++..+.+.. .+-.+|..+-|-|||..+..++..+. ...+|.+|.
T Consensus 175 ~~T~dQ~~al~~~~~~~-----------------~~~~vlta~RGRGKSa~lG~~~a~~~-----~~~~vtAP~ 226 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMP-----------------PGVAAVTAARGRGKSALAGQLISRIA-----GRAIVTAPA 226 (671)
T ss_dssp SCCHHHHHHHHHHTTCC-----------------SEEEEEEECTTSSHHHHHHHHHHHSS-----SCEEEECSS
T ss_pred CCCHHHHHHHHHHHHhh-----------------hCeEEEecCCCCCHHHHHHHHHHHHH-----hCcEEECCC
Confidence 57789999998875532 12356777789999955555554331 245888883
No 189
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=84.89 E-value=1.7 Score=42.20 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=23.5
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA 140 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~ 140 (635)
-.++..+.|+|||.++..++..+... .++++++.
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~ 139 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAA 139 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEc
Confidence 45677889999998877777555443 34666655
No 190
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=84.53 E-value=2.7 Score=45.32 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=19.9
Q ss_pred CCceEEeCCCCchHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
+..++|..+.|+|||..+-+++..
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEEeCCCCCHHHHHHHHhcc
Confidence 568999999999999887776643
No 191
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=84.07 E-value=7.5 Score=36.94 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=32.4
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhC---------CCCCcEEEeCccchHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLH---------PRCRPVIIAPRSMLLTWEEEFKK 154 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~---------~~~~~LIv~P~~l~~qW~~E~~~ 154 (635)
+.-.+|+.+.|+|||..+..++... ..+ ...+++++.-.....+....+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~-~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~ 89 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI-AGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHA 89 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH-HTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH-hcCCCcCCCccCCCccEEEEECCCCHHHHHHHHHH
Confidence 5567899999999998888877644 332 13456676654444444333433
No 192
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=83.92 E-value=2.1 Score=41.69 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=20.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
++..+|..++|+|||..|+.++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 345699999999999999988754
No 193
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=83.76 E-value=2 Score=42.68 Aligned_cols=44 Identities=18% Similarity=0.058 Sum_probs=32.5
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTW 148 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW 148 (635)
+.-.+|+.++|+|||..++.++...... .++++++.-.....++
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE 104 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH
Confidence 4558999999999999999888766543 3467877765544444
No 194
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=83.73 E-value=1.3 Score=45.90 Aligned_cols=44 Identities=25% Similarity=0.336 Sum_probs=29.7
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWE 149 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~ 149 (635)
++|++|..++|+|||..|-+++..+ +...+.+.+....+...|.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l---~~~~~~~~~~~~~~~~~~~ 106 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQEL---GSKVPFCPMVGSEVYSTEI 106 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHH---CTTSCEEEEEGGGGCCSSS
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHh---CCCceEEEEeHHHHHHHhh
Confidence 5789999999999999999888664 2223344444444444443
No 195
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=83.35 E-value=1.3 Score=43.30 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=24.5
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHh
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKL 130 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~ 130 (635)
.+++.+|..++|+|||.++-+++..+...
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 46688999999999999999988777554
No 196
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=82.48 E-value=4.5 Score=49.33 Aligned_cols=51 Identities=25% Similarity=0.154 Sum_probs=38.1
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhc
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWG 156 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~ 156 (635)
.+.+++|..++|+|||..|++++....+. ..+++++....++.+-. .++++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~--a~~~G 1476 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY--ARKLG 1476 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH--HHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH--HHHcC
Confidence 47789999999999999999998765543 45788888876654433 45554
No 197
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=82.04 E-value=3.5 Score=40.97 Aligned_cols=41 Identities=27% Similarity=0.210 Sum_probs=31.2
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccch
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSML 145 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~ 145 (635)
+.-.+|+.++|+|||..|+.++...... ..++++|......
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~ 103 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHAL 103 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCc
Confidence 5568999999999999999988776554 3467888774433
No 198
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=81.65 E-value=2.9 Score=43.63 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=19.8
Q ss_pred CCceEEeCCCCchHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
.+|++|..++|+|||..+=+++..
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999887776643
No 199
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=79.92 E-value=7 Score=38.11 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=24.9
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
.-..+..+.|.|||.++..++..+... .++++++.-
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~ 141 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAA 141 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeC
Confidence 345667789999998887777655443 456776653
No 200
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=79.83 E-value=4.7 Score=39.94 Aligned_cols=43 Identities=23% Similarity=0.169 Sum_probs=31.3
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLT 147 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~q 147 (635)
+.-++|..++|+|||..++.++...... .+++++|.......+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDP 103 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccch
Confidence 4457889999999999998888766543 346788887555443
No 201
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=79.56 E-value=2.8 Score=39.02 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=35.7
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHh
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKW 155 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~ 155 (635)
+.-.+++.++|+|||..|+.++......+ ..+++++.--.-..+..+.+...
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-~~~v~~~s~E~~~~~~~~~~~~~ 81 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVTLEERARDLRREMASF 81 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEESSSCHHHHHHHHHTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCCceeecccCCHHHHHHHHHHc
Confidence 44589999999999999988776543332 34678887655555555555543
No 202
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=78.54 E-value=1.8 Score=42.18 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=23.0
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
+.+.+|..++|+|||..|.+++..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999998887766
No 203
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=77.68 E-value=1.4 Score=39.86 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=21.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
.++.++..++|+|||..|.+++..+
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568889999999999998887654
No 204
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=77.48 E-value=4.5 Score=41.41 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=27.3
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
...+++...|+|||.++..++..+.+. ..++++|.-
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~--G~kVllv~~ 135 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR--GLKPALIAA 135 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH--HCCEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEec
Confidence 467788899999999998888777654 346777764
No 205
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=75.32 E-value=18 Score=34.73 Aligned_cols=37 Identities=16% Similarity=0.112 Sum_probs=24.6
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA 140 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~ 140 (635)
+.-.++....|+|||.++..++..+... ...+++++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~-~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLE-KHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHT-TCCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 4456777889999998877777555432 233566655
No 206
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=74.30 E-value=5.9 Score=36.63 Aligned_cols=50 Identities=24% Similarity=0.302 Sum_probs=35.3
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKK 154 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~ 154 (635)
+.-.+|+.++|+|||..++.++...... ..+++++.-.....+..+.+..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~~~~~~~~~~~~ 72 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEEHPVQVRQNMAQ 72 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSSCHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccCCHHHHHHHHHH
Confidence 4567899999999999988887666543 3567888765555555554443
No 207
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=72.33 E-value=2.4 Score=41.60 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=20.2
Q ss_pred CCceEEeCCCCchHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
+++++|..++|+|||..|-++...
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 468999999999999888777643
No 208
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=72.04 E-value=10 Score=44.12 Aligned_cols=102 Identities=10% Similarity=0.086 Sum_probs=74.3
Q ss_pred cCccccchHHHHHHHH-Hh-cCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCC
Q 006698 416 LDPEAGIKTRFLLILL-EL-STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQ 493 (635)
Q Consensus 416 ~~~~~s~K~~~l~~~l-~~-~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~ 493 (635)
..+..++|........ .. ..+.+++|.+..+..+.-..+.+.+.++.. ++.+..++|..+..++...++...+ +.
T Consensus 630 ~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~-~i~v~~l~~~~~~~~~~~~~~~l~~--g~ 706 (1151)
T 2eyq_A 630 CGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANW-PVRIEMISRFRSAKEQTQILAEVAE--GK 706 (1151)
T ss_dssp ECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHT--TC
T ss_pred ECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcC-CCeEEEEeCCCCHHHHHHHHHHHhc--CC
Confidence 3456788886544322 22 267899999999888887777777665422 6789999999999999889988887 55
Q ss_pred cEEEEEccCCcccccccccCCeEEEeC
Q 006698 494 ARIMLASTKACCEGINLVGASRVVLLD 520 (635)
Q Consensus 494 ~~vll~st~~~~~GlnL~~a~~vi~~d 520 (635)
+.|++++.......+++...+.||+=+
T Consensus 707 ~dIvV~T~~ll~~~~~~~~l~lvIiDE 733 (1151)
T 2eyq_A 707 IDILIGTHKLLQSDVKFKDLGLLIVDE 733 (1151)
T ss_dssp CSEEEECTHHHHSCCCCSSEEEEEEES
T ss_pred CCEEEECHHHHhCCccccccceEEEec
Confidence 778887766666667777776666643
No 209
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=72.01 E-value=8.2 Score=39.10 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=70.0
Q ss_pred CccccchHHHHHHH-HHhc-CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCc
Q 006698 417 DPEAGIKTRFLLIL-LELS-TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494 (635)
Q Consensus 417 ~~~~s~K~~~l~~~-l~~~-~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~ 494 (635)
.+..++|..+..-. +... .+.++||.+..+..+.-+.+.+..... .|+.+..++|+.+..+|....+.+.. ++.
T Consensus 43 apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~v~~~~g~~~~~~~~~~~~~l~~--~~~ 118 (414)
T 3oiy_A 43 APTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLAD--EKVKIFGFYSSMKKEEKEKFEKSFEE--DDY 118 (414)
T ss_dssp SCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCC--SSCCEEECCTTSCHHHHHHHHHHHHH--TCC
T ss_pred eCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHcc--CCceEEEEECCCChhhHHHHHHHhhc--CCC
Confidence 35667887743333 2222 778999999999988888888887432 48899999999999888888888876 346
Q ss_pred EEEEEccCCcccc---cccccCCeEEEeC
Q 006698 495 RIMLASTKACCEG---INLVGASRVVLLD 520 (635)
Q Consensus 495 ~vll~st~~~~~G---lnL~~a~~vi~~d 520 (635)
.|+++++.....- +++...+.||+=+
T Consensus 119 ~Iiv~Tp~~l~~~l~~~~~~~~~~iViDE 147 (414)
T 3oiy_A 119 HILVFSTQFVSKNREKLSQKRFDFVFVDD 147 (414)
T ss_dssp SEEEEEHHHHHHCHHHHTTCCCSEEEESC
T ss_pred CEEEECHHHHHHHHHHhccccccEEEEeC
Confidence 7888766554221 3445666666533
No 210
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=71.49 E-value=6.1 Score=33.23 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=18.7
Q ss_pred CCceEEeCCCCchHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFL 124 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i 124 (635)
...++|..++|+|||..|-++.
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHH
Confidence 5689999999999998877654
No 211
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=71.32 E-value=3.3 Score=48.76 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=40.4
Q ss_pred HHhcccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHhC----CCCCcEEEeC
Q 006698 66 VRKKMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKLH----PRCRPVIIAP 141 (635)
Q Consensus 66 l~~~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~----~~~~~LIv~P 141 (635)
....|-|-|.++|..- ++..++....|+|||.+.+.-+..++..+ ...++|+|++
T Consensus 7 ~~~~~t~eQ~~~i~~~---------------------~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tf 65 (1232)
T 3u4q_A 7 ADSTWTDDQWNAIVST---------------------GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTF 65 (1232)
T ss_dssp ---CCCHHHHHHHHCC---------------------SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECS
T ss_pred CCCCCCHHHHHHHhCC---------------------CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEec
Confidence 3456889999998632 56889999999999998887766666553 2235699988
Q ss_pred c
Q 006698 142 R 142 (635)
Q Consensus 142 ~ 142 (635)
+
T Consensus 66 t 66 (1232)
T 3u4q_A 66 T 66 (1232)
T ss_dssp S
T ss_pred c
Confidence 4
No 212
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=70.09 E-value=3.7 Score=45.89 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=19.9
Q ss_pred CCCCceEEeCCCCchHHHHHHHHH
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFL 124 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i 124 (635)
..+.+++|..++|+|||..+-+++
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala 259 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHH
Confidence 456789999999999998776665
No 213
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=69.86 E-value=1.8 Score=47.94 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=30.9
Q ss_pred CCCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC-ccchHHHHH
Q 006698 100 TGGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP-RSMLLTWEE 150 (635)
Q Consensus 100 ~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qW~~ 150 (635)
....+|+||..++|+|||+.|-+++... +.++|.+- ..++..|..
T Consensus 508 ~~~~~gvLl~GPPGtGKT~lAkaiA~e~------~~~f~~v~~~~l~s~~vG 553 (806)
T 3cf2_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMWFG 553 (806)
T ss_dssp CCCCSCCEEESSTTSSHHHHHHHHHHTT------TCEEEECCHHHHHTTTCS
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHh------CCceEEeccchhhccccc
Confidence 3457899999999999998888877432 23444443 556655543
No 214
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=69.54 E-value=16 Score=44.69 Aligned_cols=46 Identities=24% Similarity=0.118 Sum_probs=36.3
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHH
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWE 149 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~ 149 (635)
.+.-.+|+.++|+|||..|+.++..... ...+++++.-.....||.
T Consensus 731 ~G~lilIaG~PG~GKTtLalqlA~~~a~--~g~~VlyiS~Ees~~ql~ 776 (2050)
T 3cmu_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY 776 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh--cCCcEEEEECCCcHHHHH
Confidence 3556899999999999999988876543 245788888877778886
No 215
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=69.43 E-value=29 Score=33.16 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=24.4
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
.-..+....|.|||..+..++..+... .++++++.-
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~ 134 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAA 134 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecC
Confidence 344566889999998887777555433 456766653
No 216
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=68.81 E-value=5.5 Score=46.68 Aligned_cols=48 Identities=25% Similarity=0.326 Sum_probs=36.1
Q ss_pred EeCCCCchHHHHHHHHHHHHHHhCCC-CCcEEEeCccchHHHHHHHHHh
Q 006698 108 ISHAPGTGKTGLTLVFLQAYMKLHPR-CRPVIIAPRSMLLTWEEEFKKW 155 (635)
Q Consensus 108 Lad~~GlGKT~~ai~~i~~~~~~~~~-~~~LIv~P~~l~~qW~~E~~~~ 155 (635)
+-...|+|||.+++.-+..+...++. .++|+|||...-.+-+..+.+.
T Consensus 6 V~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~~~rl~~~ 54 (1166)
T 3u4q_B 6 LVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKT 54 (1166)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHHHHHHTCC
T ss_pred EEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHHHHHHHHh
Confidence 33446999999999888888777664 5779999988877755555543
No 217
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=67.16 E-value=3.1 Score=39.33 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=21.0
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
.+|++|..++|+|||..|-+++...
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 5689999999999999888877543
No 218
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=66.90 E-value=13 Score=43.01 Aligned_cols=102 Identities=14% Similarity=0.150 Sum_probs=73.7
Q ss_pred cCccccchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCC
Q 006698 416 LDPEAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQ 493 (635)
Q Consensus 416 ~~~~~s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~ 493 (635)
..+..++|..+..-.+... .+.++||.+..+..+.-+.+.+.. ++ ..|+.+..++|+.+..+|...++.+.. ++
T Consensus 99 ~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~-l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~--g~ 174 (1104)
T 4ddu_A 99 VAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQK-LA-DEKVKIFGFYSSMKKEEKEKFEKSFEE--DD 174 (1104)
T ss_dssp CCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHT-TS-CTTSCEEEECTTCCTTHHHHHHHHHHT--SC
T ss_pred EeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHH-hh-CCCCeEEEEeCCCCHHHHHHHHHHHhC--CC
Confidence 3456688887654443332 788999999999999999999888 33 348899999999998888888888886 44
Q ss_pred cEEEEEccCCcccc---cccccCCeEEEeCC
Q 006698 494 ARIMLASTKACCEG---INLVGASRVVLLDV 521 (635)
Q Consensus 494 ~~vll~st~~~~~G---lnL~~a~~vi~~d~ 521 (635)
+.|+++++...-.- +++...+.||+=+.
T Consensus 175 ~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEa 205 (1104)
T 4ddu_A 175 YHILVFSTQFVSKNREKLSQKRFDFVFVDDV 205 (1104)
T ss_dssp CSEEEEEHHHHHHSHHHHHTSCCSEEEESCH
T ss_pred CCEEEECHHHHHHHHHhhcccCcCEEEEeCC
Confidence 67888766554221 44556777766443
No 219
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=66.65 E-value=4.1 Score=38.45 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=20.6
Q ss_pred CCceEEeCCCCchHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
.++.+|..++|+|||..|.+++..
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHhh
Confidence 457899999999999999988754
No 220
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=65.67 E-value=23 Score=37.49 Aligned_cols=75 Identities=17% Similarity=0.254 Sum_probs=45.5
Q ss_pred CCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEc-cCCcccccccc---
Q 006698 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS-TKACCEGINLV--- 511 (635)
Q Consensus 436 ~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~s-t~~~~~GlnL~--- 511 (635)
+..++||..+-..++.+.+ .. +.++ .+.|... .+.++++.|+.. ++ -|+++. .....||||++
T Consensus 393 ~g~~lvlF~Sy~~l~~v~~---~~-----~~~v-~~q~~~~--~~~~~~~~~~~~-~~-~vl~~v~gg~~~EGiD~~d~~ 459 (551)
T 3crv_A 393 KANVLVVFPSYEIMDRVMS---RI-----SLPK-YVESEDS--SVEDLYSAISAN-NK-VLIGSVGKGKLAEGIELRNND 459 (551)
T ss_dssp SSEEEEEESCHHHHHHHHT---TC-----CSSE-EECCSSC--CHHHHHHHTTSS-SS-CEEEEESSCCSCCSSCCEETT
T ss_pred CCCEEEEecCHHHHHHHHH---hc-----CCcE-EEcCCCC--CHHHHHHHHHhc-CC-eEEEEEecceecccccccccC
Confidence 3467777766666666654 11 4333 3344321 245688899642 33 355532 26899999999
Q ss_pred --cCCeEEEeCCCC
Q 006698 512 --GASRVVLLDVVW 523 (635)
Q Consensus 512 --~a~~vi~~d~~w 523 (635)
.+..||+.-+|+
T Consensus 460 g~~l~~viI~~lPf 473 (551)
T 3crv_A 460 RSLISDVVIVGIPY 473 (551)
T ss_dssp EESEEEEEEESCCC
T ss_pred CcceeEEEEEcCCC
Confidence 477888877665
No 221
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=64.97 E-value=3.9 Score=38.78 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=20.8
Q ss_pred CCceEEeCCCCchHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
..+.+|..++|+|||..|-+++..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 568999999999999998887755
No 222
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=64.64 E-value=3.4 Score=42.32 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=20.4
Q ss_pred CCceEEeCCCCchHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
.++++|..++|+|||..|-+++..
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999888777644
No 223
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=64.39 E-value=26 Score=27.01 Aligned_cols=48 Identities=25% Similarity=0.411 Sum_probs=41.1
Q ss_pred eEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCC
Q 006698 438 KVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDP 490 (635)
Q Consensus 438 kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~ 490 (635)
-++||+.-...+..|.+.+... |..++.+......+.|.+.++.|...
T Consensus 4 ifvvfssdpeilkeivreikrq-----gvrvvllysdqdekrrrerleefekq 51 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQ-----GVRVVLLYSDQDEKRRRERLEEFEKQ 51 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHT-----TCEEEEEECCSCHHHHHHHHHHHHTT
T ss_pred EEEEecCCHHHHHHHHHHHHhC-----CeEEEEEecCchHHHHHHHHHHHHHc
Confidence 3678999888888888888776 99999999999989999999999863
No 224
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=64.14 E-value=4.8 Score=37.71 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=20.5
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
.+|++|..++|+|||..+-+++..+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 5689999999999998887776543
No 225
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=63.21 E-value=5.4 Score=38.45 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=21.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
+.+.+|..++|+|||..|-+++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999998888777554
No 226
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=62.43 E-value=5.5 Score=37.88 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=19.5
Q ss_pred CCCceEEeCCCCchHHHHHHHHHH
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~ 125 (635)
..+|++|..++|+|||..+=+++.
T Consensus 43 ~~~GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 43 TPAGVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 356799999999999987766654
No 227
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=62.15 E-value=32 Score=34.89 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=26.0
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
+.-.+++...|+|||.++..++..+... .++++++.-
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~ 134 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAA 134 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeec
Confidence 3446677899999998888877655433 456777664
No 228
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=62.04 E-value=45 Score=30.15 Aligned_cols=95 Identities=17% Similarity=0.101 Sum_probs=61.2
Q ss_pred CccccchHHH-HHHHHHhc----CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCC
Q 006698 417 DPEAGIKTRF-LLILLELS----TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPS 491 (635)
Q Consensus 417 ~~~~s~K~~~-l~~~l~~~----~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~ 491 (635)
.+..++|... +.-++... .+.++||.+..+..+.-+.+.+........++.+..+.|+.+..++... ++
T Consensus 68 a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--- 141 (230)
T 2oxc_A 68 AKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTR---LK--- 141 (230)
T ss_dssp CCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHH---TT---
T ss_pred CCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHh---cc---
Confidence 3556788765 34444432 4679999999988888888887765433347889999999876654333 22
Q ss_pred CCcEEEEEccCCc-----ccccccccCCeEEE
Q 006698 492 SQARIMLASTKAC-----CEGINLVGASRVVL 518 (635)
Q Consensus 492 ~~~~vll~st~~~-----~~GlnL~~a~~vi~ 518 (635)
+..|++++.... ...+++...+.+|+
T Consensus 142 -~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 142 -KCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp -SCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred -CCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 256777655433 12455666666665
No 229
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=61.97 E-value=53 Score=29.31 Aligned_cols=99 Identities=16% Similarity=0.142 Sum_probs=61.7
Q ss_pred ccccchHHHHH-HHHHhc----CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCC
Q 006698 418 PEAGIKTRFLL-ILLELS----TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492 (635)
Q Consensus 418 ~~~s~K~~~l~-~~l~~~----~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~ 492 (635)
+..++|..... -++... .+.++||.+..+..+.-+.+.+.......++..+..+.|+.+..++...+.. +
T Consensus 59 ~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~-----~ 133 (220)
T 1t6n_A 59 KSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK-----N 133 (220)
T ss_dssp CTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH-----S
T ss_pred CCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc-----C
Confidence 45677875433 333332 2448999999988888887777765433347889999999886655444332 2
Q ss_pred CcEEEEEccCCc-----ccccccccCCeEEEeCC
Q 006698 493 QARIMLASTKAC-----CEGINLVGASRVVLLDV 521 (635)
Q Consensus 493 ~~~vll~st~~~-----~~GlnL~~a~~vi~~d~ 521 (635)
...|++++.... ...+++...+.+|+=+.
T Consensus 134 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEa 167 (220)
T 1t6n_A 134 CPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 167 (220)
T ss_dssp CCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESH
T ss_pred CCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCH
Confidence 245677654432 12355667777776443
No 230
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=61.16 E-value=16 Score=44.03 Aligned_cols=45 Identities=24% Similarity=0.125 Sum_probs=33.3
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHH
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLT 147 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~q 147 (635)
..+..++|+.++|+|||..|+.++...... ..+++++.-.....|
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa~~--g~~VlyiS~Ees~~q 774 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDP 774 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCH
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHHHHc--CCCeEEEeccchHHH
Confidence 346678999999999999999988776543 346777776544444
No 231
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=59.93 E-value=21 Score=28.43 Aligned_cols=105 Identities=10% Similarity=-0.016 Sum_probs=53.8
Q ss_pred HHHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCC--CCCcEEEEEccCC
Q 006698 426 FLLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDP--SSQARIMLASTKA 503 (635)
Q Consensus 426 ~l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~--~~~~~vll~st~~ 503 (635)
.+..++... |-.+..++.....++.+ ... ...++.++-.++...-.++++..+.. ...+.|++++...
T Consensus 18 ~l~~~L~~~-g~~v~~~~~~~~a~~~l----~~~-----~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 87 (127)
T 3i42_A 18 TFKELLEML-GFQADYVMSGTDALHAM----STR-----GYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFA 87 (127)
T ss_dssp HHHHHHHHT-TEEEEEESSHHHHHHHH----HHS-----CCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-
T ss_pred HHHHHHHHc-CCCEEEECCHHHHHHHH----Hhc-----CCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCc
Confidence 344445443 44565555444333333 332 56677777666554445555555432 3456777765443
Q ss_pred cccccccccCCeEEEeCCCCChhhHHhhhhhhhhcCC
Q 006698 504 CCEGINLVGASRVVLLDVVWNPFVERQAISRAYRLGQ 540 (635)
Q Consensus 504 ~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ 540 (635)
...-.....+...-++.-|.++....+++.+.++-++
T Consensus 88 ~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 88 KNDLGKEACELFDFYLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp CTTCCHHHHHHCSEEEESSCCHHHHHHHHHHHC----
T ss_pred chhHHHHHHHhhHHheeCCCCHHHHHHHHHHhhccCC
Confidence 3222222111122255578899999999988877554
No 232
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=59.50 E-value=4.9 Score=41.95 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=19.5
Q ss_pred CCceEEeCCCCchHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~ 125 (635)
+++++|..++|+|||..|-++..
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGG
T ss_pred CCeeEeecCchHHHHHHHHHHHH
Confidence 56899999999999988777663
No 233
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=58.94 E-value=7.9 Score=35.62 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=22.4
Q ss_pred eEEeCCCCchHHHHHHHHHHHHHHhCC
Q 006698 106 CIISHAPGTGKTGLTLVFLQAYMKLHP 132 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~~~~~~ 132 (635)
.|-+-++|.|||.++++++..+.+.+.
T Consensus 8 ~Itgt~t~vGKT~vt~~L~~~l~~~G~ 34 (228)
T 3of5_A 8 FIIGTDTEVGKTYISTKLIEVCEHQNI 34 (228)
T ss_dssp EEEESSSSSCHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHCCC
Confidence 466677999999999999988877654
No 234
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=58.21 E-value=50 Score=26.24 Aligned_cols=76 Identities=16% Similarity=0.072 Sum_probs=44.5
Q ss_pred ceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcc-----ccc-ccccCCeEEEeCCCCChhhHHhhhhhhhhcC
Q 006698 466 QEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACC-----EGI-NLVGASRVVLLDVVWNPFVERQAISRAYRLG 539 (635)
Q Consensus 466 ~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~-----~Gl-nL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~G 539 (635)
...+.++-.++...-.++++..+.......|++++..... ..+ ....+...-++.-|.++....+++.++...+
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 5677777777655555666666543345677776544321 111 1223334445667888888888888887655
Q ss_pred Cc
Q 006698 540 QK 541 (635)
Q Consensus 540 Q~ 541 (635)
+.
T Consensus 127 ~~ 128 (135)
T 3eqz_A 127 AE 128 (135)
T ss_dssp --
T ss_pred cc
Confidence 43
No 235
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=57.97 E-value=6.5 Score=39.11 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=21.4
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHH
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
...+.+|..++|+|||..|-++...+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999888876543
No 236
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=57.48 E-value=8.7 Score=39.76 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=21.9
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
.++.+|..++|+|||..+-+++..+.
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 56889999999999999888876553
No 237
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=57.31 E-value=17 Score=38.04 Aligned_cols=50 Identities=8% Similarity=0.034 Sum_probs=35.2
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHH
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEF 152 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~ 152 (635)
.+.-.+|+.++|+|||..++.++...... ...+++++.--.-..+....+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~s~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEESVEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSSCHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccCCHHHHHHHH
Confidence 34568999999999999999888766433 134778887754445555444
No 238
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=57.07 E-value=26 Score=31.68 Aligned_cols=49 Identities=20% Similarity=0.186 Sum_probs=31.5
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFK 153 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~ 153 (635)
+.-.+|..+.|+|||..+..++...... .++++++.......+....+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~~~~~~~~~~~ 71 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEESRDSIIRQAK 71 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSSCHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEcccCHHHHHHHHH
Confidence 4567889999999998888777555443 345677665443444333333
No 239
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=56.96 E-value=38 Score=26.55 Aligned_cols=59 Identities=14% Similarity=0.058 Sum_probs=40.6
Q ss_pred CCCeEEEEcC------ChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEc
Q 006698 435 TNEKVLVFSQ------YIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500 (635)
Q Consensus 435 ~~~kviIFs~------~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~s 500 (635)
...+|+||+. +-.......++|... |+++..++=....+.++.+.+.... ..+.++.+.
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~-----gi~~~~~dI~~~~~~~~~l~~~~g~--~tvP~ifi~ 80 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNL-----NVPFEDVNILENEMLRQGLKEYSNW--PTFPQLYIG 80 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHT-----TCCCEEEEGGGCHHHHHHHHHHHTC--SSSCEEEET
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHHCC--CCCCeEEEC
Confidence 5789999998 577788899999987 8888888765555555555544433 234444444
No 240
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=56.78 E-value=5.4 Score=35.72 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=20.0
Q ss_pred CCceEEeCCCCchHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~ 125 (635)
+.+.+|..++|+|||-.|+.++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 56789999999999988888773
No 241
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=56.60 E-value=27 Score=26.96 Aligned_cols=71 Identities=11% Similarity=0.078 Sum_probs=32.9
Q ss_pred CceEEEEeCCCCHHHHHHHHHHhcCCC--CCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhh
Q 006698 465 GQEVLYMDGKQDVKKRQSSINVLNDPS--SQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYR 537 (635)
Q Consensus 465 g~~~~~i~G~~~~~~r~~~i~~F~~~~--~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R 537 (635)
....+.++-.++...-...++..+... ..+.+++++...... ....+...-++..|.++....+++.++.+
T Consensus 45 ~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~--~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 45 QPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD--PLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp CCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS--HHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch--hhhhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 445666665554333333444443211 234555554433222 22222222344556777777777766543
No 242
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=56.55 E-value=16 Score=34.31 Aligned_cols=54 Identities=11% Similarity=0.055 Sum_probs=39.9
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhcCC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGID 158 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~~~ 158 (635)
+...++..++|+|||..++.++..-.+.+ .++++++-..-..+-.+.++.++.+
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~G--e~~~~~~~~e~~~~l~~~~~~~G~d 74 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKSD--NLVGMFSISYPLQLIIRILSRFGVD 74 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHTT--CEEEEEECSSCHHHHHHHHHHTTCC
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHCC--CcEEEEEEeCCHHHHHHHHHHcCCC
Confidence 44567777999999988888887766653 4678888777777777777777544
No 243
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=56.15 E-value=36 Score=41.04 Aligned_cols=51 Identities=27% Similarity=0.290 Sum_probs=36.4
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccch-HHHHHHHHHhcCC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSML-LTWEEEFKKWGID 158 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~-~qW~~E~~~~~~~ 158 (635)
++-+.+..+.|+|||..|+.++.+..+. .+.+++|.+.+.+ ..+ +++++.+
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~---~~~~Gv~ 1482 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY---ARKLGVD 1482 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH---HHHTTCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH---HHHcCCC
Confidence 3448899999999999999999775544 3467888886555 444 5665533
No 244
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=55.92 E-value=12 Score=33.95 Aligned_cols=34 Identities=24% Similarity=0.194 Sum_probs=25.7
Q ss_pred eEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
++.+-..|.|||.+++.++..+.+.+ .+++++=|
T Consensus 5 ~v~s~kgGvGKTt~a~nLa~~la~~G--~rVll~dp 38 (224)
T 1byi_A 5 FVTGTDTEVGKTVASCALLQAAKAAG--YRTAGYKP 38 (224)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHHTT--CCEEEECS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEcc
Confidence 35555689999999999998776653 47787755
No 245
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=55.77 E-value=9.7 Score=35.37 Aligned_cols=27 Identities=19% Similarity=0.081 Sum_probs=22.5
Q ss_pred eEEeCCCCchHHHHHHHHHHHHHHhCC
Q 006698 106 CIISHAPGTGKTGLTLVFLQAYMKLHP 132 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~~~~~~ 132 (635)
.|.+-++|.|||.++++++..+.+.+.
T Consensus 25 ~ItgT~t~vGKT~vs~gL~~~L~~~G~ 51 (242)
T 3qxc_A 25 FISATNTNAGKTTCARLLAQYCNACGV 51 (242)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhCCC
Confidence 466778999999999999988877654
No 246
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=55.30 E-value=7.6 Score=38.81 Aligned_cols=25 Identities=16% Similarity=0.284 Sum_probs=20.7
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
..+.+|..++|+|||..|-++...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 5589999999999998888776543
No 247
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=54.06 E-value=26 Score=36.78 Aligned_cols=49 Identities=20% Similarity=0.143 Sum_probs=32.4
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFK 153 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~ 153 (635)
+.-.+|..+.|+|||..+..++...... ..+++.+++.....+....+.
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~--G~~vi~~~~ee~~~~l~~~~~ 329 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACAN--KERAILFAYEESRAQLLRNAY 329 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEESSSCHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhC--CCCEEEEEEeCCHHHHHHHHH
Confidence 4557889999999998877777554432 335677887544445544443
No 248
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=53.45 E-value=40 Score=26.03 Aligned_cols=16 Identities=6% Similarity=-0.049 Sum_probs=9.2
Q ss_pred CCCCChhhHHhhhhhh
Q 006698 520 DVVWNPFVERQAISRA 535 (635)
Q Consensus 520 d~~wnp~~~~Qa~gR~ 535 (635)
.-|.++....+++.++
T Consensus 99 ~Kp~~~~~l~~~i~~~ 114 (116)
T 3a10_A 99 VKSFNFDELKEKVKKL 114 (116)
T ss_dssp ECCSSTHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHH
Confidence 3456666666665554
No 249
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=53.27 E-value=55 Score=25.95 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=10.6
Q ss_pred CeEEEEcCChhHHHHHHHHHHh
Q 006698 437 EKVLVFSQYIEPLTLIMEQLRH 458 (635)
Q Consensus 437 ~kviIFs~~~~~~~~l~~~L~~ 458 (635)
.+|+|..........+...|..
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~ 28 (132)
T 3lte_A 7 KRILVVDDDQAMAAAIERVLKR 28 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 250
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=52.80 E-value=9.4 Score=33.40 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=20.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
....+|...+|+|||.++-.+...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478899999999998888776544
No 251
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=52.77 E-value=11 Score=35.11 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=22.6
Q ss_pred eEEeCCCCchHHHHHHHHHHHHHHhCC
Q 006698 106 CIISHAPGTGKTGLTLVFLQAYMKLHP 132 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~~~~~~ 132 (635)
.|-+-++|.|||.++++++..+.+.+.
T Consensus 30 ~Itgt~t~vGKT~vt~gL~~~l~~~G~ 56 (251)
T 3fgn_A 30 VVTGTGTGVGKTVVCAALASAARQAGI 56 (251)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHCCC
Confidence 467778999999999999988877654
No 252
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=51.69 E-value=85 Score=30.40 Aligned_cols=36 Identities=25% Similarity=0.222 Sum_probs=22.2
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA 140 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~ 140 (635)
+.-..+..+.|+|||-++-.++ .+++.. .++++++.
T Consensus 129 g~vi~lvG~nGaGKTTll~~La-g~l~~~-~g~V~l~g 164 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLA-NWLKNH-GFSVVIAA 164 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH-HHHHHT-TCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHH-HHHHhc-CCEEEEEe
Confidence 4456788999999996655554 444433 34555543
No 253
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=51.20 E-value=77 Score=31.14 Aligned_cols=99 Identities=17% Similarity=0.150 Sum_probs=63.0
Q ss_pred CccccchHHHH-HHHHHhc----CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCC
Q 006698 417 DPEAGIKTRFL-LILLELS----TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPS 491 (635)
Q Consensus 417 ~~~~s~K~~~l-~~~l~~~----~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~ 491 (635)
.+..++|.... .-++... .+.++||.+..+..+.-+.+.+.......+++.+..+.|+.+..+....+..
T Consensus 52 a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----- 126 (391)
T 1xti_A 52 AKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK----- 126 (391)
T ss_dssp CSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHH-----
T ss_pred CCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhc-----
Confidence 34567787653 3333332 4568999999988888877777765444447889999999887665544432
Q ss_pred CCcEEEEEccCCcc-----cccccccCCeEEEeC
Q 006698 492 SQARIMLASTKACC-----EGINLVGASRVVLLD 520 (635)
Q Consensus 492 ~~~~vll~st~~~~-----~GlnL~~a~~vi~~d 520 (635)
+...|++++..... ..+++...+.||+=+
T Consensus 127 ~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDE 160 (391)
T 1xti_A 127 NCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 160 (391)
T ss_dssp SCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECS
T ss_pred CCCCEEEECHHHHHHHHHcCCccccccCEEEEeC
Confidence 22457776654432 234566677776633
No 254
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=50.70 E-value=49 Score=26.10 Aligned_cols=48 Identities=15% Similarity=0.061 Sum_probs=35.7
Q ss_pred CCCeEEEEcC------ChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHh
Q 006698 435 TNEKVLVFSQ------YIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVL 487 (635)
Q Consensus 435 ~~~kviIFs~------~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F 487 (635)
...+|+||+. +-.......++|... |+.+..++=....+.++.+.+.-
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~-----gi~y~~~di~~d~~~~~~l~~~~ 67 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKH-----NIQFSSFDIFSDEEVRQGLKAYS 67 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHT-----TCCCEEEEGGGCHHHHHHHHHHH
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHc-----CCCeEEEECcCCHHHHHHHHHHH
Confidence 5789999995 566678888999987 88888887666655555554443
No 255
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=50.66 E-value=8.7 Score=33.51 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.7
Q ss_pred CCceEEeCCCCchHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~ 125 (635)
+.|.++..+.|+|||-.|++++.
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 67999999999999999998874
No 256
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=49.82 E-value=15 Score=33.58 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=24.7
Q ss_pred EEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 107 iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
+.+.--|.|||.+++.++..+.+. ..++|+|=.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~--g~~VlliD~ 39 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDR--GRKVLAVDG 39 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred EecCCCCCCHHHHHHHHHHHHHhc--CCeEEEEeC
Confidence 445667999999999998777654 347777754
No 257
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=49.69 E-value=17 Score=31.86 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=20.5
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHH
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
.+.-.+|...+|+|||.++-.+...+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345578999999999988777765543
No 258
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=49.63 E-value=99 Score=24.73 Aligned_cols=73 Identities=10% Similarity=-0.045 Sum_probs=31.9
Q ss_pred CceEEEEeCCCCHHHHHHHHHHhcC--CCCCcEEEEEccCCccc-ccccccCCeEEEeCCCCChhhHHhhhhhhhh
Q 006698 465 GQEVLYMDGKQDVKKRQSSINVLND--PSSQARIMLASTKACCE-GINLVGASRVVLLDVVWNPFVERQAISRAYR 537 (635)
Q Consensus 465 g~~~~~i~G~~~~~~r~~~i~~F~~--~~~~~~vll~st~~~~~-GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R 537 (635)
...++.++-.++...-.++++..+. ....+.|++++...... -.....+...-++.-|.++....+++.++.+
T Consensus 51 ~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 51 FSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp CCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 3455555544433222333443332 22345555554332211 1111222233334456666666666666554
No 259
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=49.28 E-value=11 Score=36.73 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=19.9
Q ss_pred CCceEEeCCCCchHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
..+++|..++|+|||..|-++...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 458999999999999888777543
No 260
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=48.95 E-value=16 Score=31.71 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=19.9
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
....+|...+|+|||.++-.+...+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578999999999998877766443
No 261
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=48.81 E-value=72 Score=25.57 Aligned_cols=49 Identities=12% Similarity=0.109 Sum_probs=36.1
Q ss_pred CCCeEEEEcC------ChhHHHHHHHHHHhhhcccCCce---EEEEeCCCCHHHHHHHHHHhc
Q 006698 435 TNEKVLVFSQ------YIEPLTLIMEQLRHRFNWREGQE---VLYMDGKQDVKKRQSSINVLN 488 (635)
Q Consensus 435 ~~~kviIFs~------~~~~~~~l~~~L~~~~~~~~g~~---~~~i~G~~~~~~r~~~i~~F~ 488 (635)
...+|+||+. +-.......++|... |+. +..++=....+.++.+.+...
T Consensus 14 ~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~-----gv~~~~~~~~dv~~~~~~~~~l~~~sg 71 (121)
T 3gx8_A 14 ESAPVVLFMKGTPEFPKCGFSRATIGLLGNQ-----GVDPAKFAAYNVLEDPELREGIKEFSE 71 (121)
T ss_dssp HSCSEEEEESBCSSSBCTTHHHHHHHHHHHH-----TBCGGGEEEEECTTCHHHHHHHHHHHT
T ss_pred ccCCEEEEEeccCCCCCCccHHHHHHHHHHc-----CCCcceEEEEEecCCHHHHHHHHHHhC
Confidence 4678999998 567788889999887 887 777776666555655544443
No 262
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=48.80 E-value=13 Score=34.58 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=19.0
Q ss_pred CCceEEeCCCCchHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~ 125 (635)
..|.+|..++|+|||..+-+++.
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999977766654
No 263
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=48.63 E-value=16 Score=32.86 Aligned_cols=41 Identities=20% Similarity=0.303 Sum_probs=27.7
Q ss_pred EEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe--CccchHHHHH
Q 006698 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA--PRSMLLTWEE 150 (635)
Q Consensus 107 iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~--P~~l~~qW~~ 150 (635)
+.+.--|.|||.+++.++..+.+.+ ++|+|= |..-+..|..
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~~~~~~~ 47 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRSATGWGK 47 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCHHHHHHH
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCCHHHHhc
Confidence 3445569999999999987776543 676643 5555555654
No 264
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=48.59 E-value=13 Score=33.16 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=20.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
+...+|...+|+|||..+-.++..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4578999999999998877776544
No 265
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=48.54 E-value=31 Score=27.88 Aligned_cols=45 Identities=9% Similarity=-0.052 Sum_probs=36.4
Q ss_pred EEEEcCChhHH-------HHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhc
Q 006698 439 VLVFSQYIEPL-------TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN 488 (635)
Q Consensus 439 viIFs~~~~~~-------~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~ 488 (635)
|.||+...... ..+..+|... |+.|..++=+...+.|+.+.++.+
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~k-----gV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEAN-----KIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHT-----TCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHhcc
Confidence 56776654332 5788899887 999999999999999999999883
No 266
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=48.50 E-value=28 Score=27.31 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=33.4
Q ss_pred HHHHHhc-CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCC
Q 006698 428 LILLELS-TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475 (635)
Q Consensus 428 ~~~l~~~-~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~ 475 (635)
.+.+... ++.++|+||+.-.........|... |+.+..++|++
T Consensus 46 ~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~-----G~~v~~l~GG~ 89 (108)
T 3gk5_A 46 REKWKILERDKKYAVICAHGNRSAAAVEFLSQL-----GLNIVDVEGGI 89 (108)
T ss_dssp HHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTT-----TCCEEEETTHH
T ss_pred HHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHc-----CCCEEEEcCcH
Confidence 3334444 6788999999877777888888887 88999999985
No 267
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=48.43 E-value=14 Score=37.13 Aligned_cols=19 Identities=37% Similarity=0.333 Sum_probs=15.5
Q ss_pred CCceEEe-CCCCchHHHHHH
Q 006698 103 GNGCIIS-HAPGTGKTGLTL 121 (635)
Q Consensus 103 ~~g~iLa-d~~GlGKT~~ai 121 (635)
.++||+| ..+|+|||.++.
T Consensus 140 ~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 140 YNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp CCEEEEEESCTTSSHHHHHH
T ss_pred cceEEEEECCCCCCCceEeC
Confidence 6678777 569999999975
No 268
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=48.25 E-value=5.8 Score=26.97 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=22.5
Q ss_pred ccCCCCCCCCcchhhhhhcCCCCCccccccC
Q 006698 6 DIDPPFATSPSRRAEWREYNNVDPSFLDDLN 36 (635)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (635)
.|+++|.. |+.++|+-.++.....++++.
T Consensus 19 ~YlVKWkg--y~~~TWEp~~nL~~~li~~f~ 47 (54)
T 1x3p_A 19 EYLVKWTD--MSDATWEPQDNVDSTLVLLYQ 47 (54)
T ss_dssp CBCCCCSS--SSSCSCSTTCCSSSSSHHHHT
T ss_pred EEEEEECC--CCcCCccchHHCCHHHHHHHH
Confidence 78999997 588999999877655555554
No 269
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=48.23 E-value=14 Score=36.42 Aligned_cols=19 Identities=42% Similarity=0.546 Sum_probs=15.7
Q ss_pred CCceEEe-CCCCchHHHHHH
Q 006698 103 GNGCIIS-HAPGTGKTGLTL 121 (635)
Q Consensus 103 ~~g~iLa-d~~GlGKT~~ai 121 (635)
.++||+| ..+|+|||.++.
T Consensus 85 ~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 85 YNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp CEEEEEEECSTTSSHHHHHH
T ss_pred cceeEEEeCCCCCCCceEeC
Confidence 6788877 579999999885
No 270
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=47.03 E-value=18 Score=33.66 Aligned_cols=33 Identities=30% Similarity=0.289 Sum_probs=24.8
Q ss_pred eEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe
Q 006698 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA 140 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~ 140 (635)
++.+..-|.|||.+++.++..+.+. ..++|+|=
T Consensus 6 ~v~s~kgGvGKTt~a~~LA~~la~~--g~~VlliD 38 (263)
T 1hyq_A 6 TVASGKGGTGKTTITANLGVALAQL--GHDVTIVD 38 (263)
T ss_dssp EEEESSSCSCHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHHhC--CCcEEEEE
Confidence 3556677999999999998777654 34777775
No 271
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=46.78 E-value=77 Score=25.38 Aligned_cols=74 Identities=15% Similarity=0.042 Sum_probs=34.7
Q ss_pred CceEEEEeCCCCHHHHHHHHHHhcC--CCCCcEEEEEccCCccccc--ccccCCeEEEeCCCCChhhHHhhhhhhhhc
Q 006698 465 GQEVLYMDGKQDVKKRQSSINVLND--PSSQARIMLASTKACCEGI--NLVGASRVVLLDVVWNPFVERQAISRAYRL 538 (635)
Q Consensus 465 g~~~~~i~G~~~~~~r~~~i~~F~~--~~~~~~vll~st~~~~~Gl--nL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~ 538 (635)
...++.++-.++...-.++++..+. ....+.|++++......-. ....+...-++.-|.++....+++.++.+-
T Consensus 50 ~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 50 PYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp CCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 4455666555444334444444443 2234556655433211111 222223333445566777777777666553
No 272
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=46.35 E-value=11 Score=36.63 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=20.7
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
..+++|..++|+|||..|-++....
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999998888776543
No 273
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=46.34 E-value=17 Score=35.37 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=27.0
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
=++...--|.|||.+|.+++..+.+. ..++|+|-.
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA~~--G~rVLlvD~ 50 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMARS--GKKTLVIST 50 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHC--CCcEEEEeC
Confidence 35777788999999999998777654 457777764
No 274
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=46.10 E-value=16 Score=40.54 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=21.9
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
.++.+|..++|+|||..|-+++..+.
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHh
Confidence 56899999999999998888776653
No 275
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=45.93 E-value=19 Score=35.53 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=26.3
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA 140 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~ 140 (635)
=++...--|.|||.+|.+++..+.+. ..++|+|-
T Consensus 28 i~v~sgKGGvGKTTvA~~LA~~lA~~--G~rVLlvD 61 (349)
T 3ug7_A 28 YIMFGGKGGVGKTTMSAATGVYLAEK--GLKVVIVS 61 (349)
T ss_dssp EEEEECSSSTTHHHHHHHHHHHHHHS--SCCEEEEE
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHC--CCeEEEEe
Confidence 45777888999999999998777664 34677666
No 276
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=45.88 E-value=21 Score=36.45 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=27.8
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
.+..+++...|.|||.++..++..+... ...++++|.-
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~-~G~kVllvd~ 137 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREK-HKKKVLVVSA 137 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHT-SCCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEEec
Confidence 3456677889999999999988777654 1357777664
No 277
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=45.72 E-value=19 Score=33.64 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=24.5
Q ss_pred eEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe
Q 006698 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA 140 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~ 140 (635)
++.+---|.|||.+|+.++..+.+. ..++|+|=
T Consensus 22 ~v~s~kGGvGKTT~a~nLA~~la~~--G~~VlliD 54 (262)
T 2ph1_A 22 AVMSGKGGVGKSTVTALLAVHYARQ--GKKVGILD 54 (262)
T ss_dssp EEECSSSCTTHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHHC--CCeEEEEe
Confidence 3556677999999999998777654 34677764
No 278
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=45.52 E-value=16 Score=36.10 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=15.9
Q ss_pred CCceEEe-CCCCchHHHHHHH
Q 006698 103 GNGCIIS-HAPGTGKTGLTLV 122 (635)
Q Consensus 103 ~~g~iLa-d~~GlGKT~~ai~ 122 (635)
.++||+| ..+|+|||.++..
T Consensus 92 ~n~tifAYGqTGSGKTyTm~G 112 (354)
T 3gbj_A 92 YNACIFAYGQTGSGKSYTMMG 112 (354)
T ss_dssp CCEEEEEEECTTSSHHHHHTB
T ss_pred ceeEEEeeCCCCCCCceEEec
Confidence 6677777 6899999988753
No 279
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=45.18 E-value=77 Score=24.37 Aligned_cols=58 Identities=21% Similarity=0.123 Sum_probs=40.6
Q ss_pred CCCeEEEEcC------ChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEE
Q 006698 435 TNEKVLVFSQ------YIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499 (635)
Q Consensus 435 ~~~kviIFs~------~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~ 499 (635)
...+|+||+. +-.....+..+|... |+.+..++=...+..++.+...+.. ..+.++++
T Consensus 15 ~~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~-----~i~~~~vdi~~~~~~~~~l~~~~g~--~~vP~v~i 78 (105)
T 2yan_A 15 NKASVMLFMKGNKQEAKCGFSKQILEILNST-----GVEYETFDILEDEEVRQGLKAYSNW--PTYPQLYV 78 (105)
T ss_dssp TSSSEEEEESBCSSSBCTTHHHHHHHHHHHH-----TCCCEEEEGGGCHHHHHHHHHHHTC--CSSCEEEE
T ss_pred ccCCEEEEEecCCCCCCCccHHHHHHHHHHC-----CCCeEEEECCCCHHHHHHHHHHHCC--CCCCeEEE
Confidence 4557999985 556788889999887 8888888877666666666666653 23444443
No 280
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=45.04 E-value=66 Score=34.24 Aligned_cols=82 Identities=12% Similarity=0.139 Sum_probs=61.0
Q ss_pred cCccccchHHHHH-HHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCc
Q 006698 416 LDPEAGIKTRFLL-ILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQA 494 (635)
Q Consensus 416 ~~~~~s~K~~~l~-~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~ 494 (635)
..+..++|..... -.+. .+.++||.+..+..+.-..+.|... |+.+..++|+.+..++..+........+..
T Consensus 65 ~~pTGsGKTl~~~lpal~--~~g~~lVisP~~~L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~ 137 (591)
T 2v1x_A 65 VMPTGGGKSLCYQLPALC--SDGFTLVICPLISLMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSEL 137 (591)
T ss_dssp ECCTTSCTTHHHHHHHHT--SSSEEEEECSCHHHHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCC
T ss_pred EECCCChHHHHHHHHHHH--cCCcEEEEeCHHHHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCC
Confidence 3455677775432 2222 4568999999999888888888887 999999999999998888888875434668
Q ss_pred EEEEEccCCc
Q 006698 495 RIMLASTKAC 504 (635)
Q Consensus 495 ~vll~st~~~ 504 (635)
.|+++++...
T Consensus 138 ~Ilv~Tpe~L 147 (591)
T 2v1x_A 138 KLIYVTPEKI 147 (591)
T ss_dssp CEEEECHHHH
T ss_pred CEEEEChhHh
Confidence 8888877543
No 281
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=44.47 E-value=1.2e+02 Score=27.67 Aligned_cols=96 Identities=20% Similarity=0.170 Sum_probs=57.4
Q ss_pred ccccchHHHH-HHHHHh---c-CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCC
Q 006698 418 PEAGIKTRFL-LILLEL---S-TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492 (635)
Q Consensus 418 ~~~s~K~~~l-~~~l~~---~-~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~ 492 (635)
+..++|.... .-++.. . .+.++||.+..+..+.-+.+.+...... .++.+..+.|+.+..++...+ ..
T Consensus 88 ~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~---~~--- 160 (249)
T 3ber_A 88 ETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSS-IGVQSAVIVGGIDSMSQSLAL---AK--- 160 (249)
T ss_dssp CTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGG-GTCCEEEECTTSCHHHHHHHH---HT---
T ss_pred CCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhcc-CCeeEEEEECCCChHHHHHHh---cC---
Confidence 4567787653 223222 2 4567999999988777777666554221 278889999988755443332 22
Q ss_pred CcEEEEEccCCc------ccccccccCCeEEEeC
Q 006698 493 QARIMLASTKAC------CEGINLVGASRVVLLD 520 (635)
Q Consensus 493 ~~~vll~st~~~------~~GlnL~~a~~vi~~d 520 (635)
+..|++++.... ..++++...+.||+=+
T Consensus 161 ~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDE 194 (249)
T 3ber_A 161 KPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194 (249)
T ss_dssp CCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS
T ss_pred CCCEEEECHHHHHHHHHcCCCcCccccCEEEEcC
Confidence 356777654432 1345666777776633
No 282
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=44.40 E-value=19 Score=31.86 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=25.5
Q ss_pred eCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe--CccchHHHH
Q 006698 109 SHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA--PRSMLLTWE 149 (635)
Q Consensus 109 ad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~--P~~l~~qW~ 149 (635)
+---|.|||.+++.++..+.+. ..++|+|= |..-+..|.
T Consensus 8 s~kgG~GKTt~a~~la~~la~~--g~~vlliD~D~~~~~~~~~ 48 (206)
T 4dzz_A 8 NPKGGSGKTTAVINIATALSRS--GYNIAVVDTDPQMSLTNWS 48 (206)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHHHH
T ss_pred eCCCCccHHHHHHHHHHHHHHC--CCeEEEEECCCCCCHHHHH
Confidence 3445999999999998777653 34676665 333444443
No 283
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=44.31 E-value=19 Score=37.60 Aligned_cols=49 Identities=12% Similarity=0.132 Sum_probs=29.4
Q ss_pred hhccCCCEEEEeCCCcCCCcccHHHHHHHhcccCcEEEEecccCCCChhhHHHHHH
Q 006698 228 ILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKTRRRIILSGTPFQNNFQELENTLS 283 (635)
Q Consensus 228 ~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~~~~l~LTgTP~~n~~~el~~ll~ 283 (635)
.+...+|.++++|.- . .....++..+.+.+.. + +|-..|++.++..-+.
T Consensus 329 ~LR~~PD~iivgEir---~--~E~~~~l~a~~tGh~~-~-sT~Ha~~~~~~l~Rl~ 377 (511)
T 2oap_1 329 ALRQRPDYIIVGEVR---G--REAQTLFQAMSTGHAS-Y-STLHAGDINQMVYRLE 377 (511)
T ss_dssp TGGGCCSEEEESCCC---S--THHHHHHHHHHTTCEE-E-EEEECSSHHHHHHHHH
T ss_pred hhccCCCeEEeCCcC---H--HHHHHHHHhhcCCCCc-c-cccccCCHHHHHHHHH
Confidence 445678999999964 2 2244455555544443 2 3556688887766543
No 284
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=44.26 E-value=66 Score=25.91 Aligned_cols=19 Identities=0% Similarity=-0.179 Sum_probs=10.6
Q ss_pred CCCChhhHHhhhhhhhhcC
Q 006698 521 VVWNPFVERQAISRAYRLG 539 (635)
Q Consensus 521 ~~wnp~~~~Qa~gR~~R~G 539 (635)
-|.++....+++.++.+..
T Consensus 104 kP~~~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 104 KPFRLDYLLERVKKIISST 122 (142)
T ss_dssp SSCCHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHhhc
Confidence 3556666666666665543
No 285
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=44.19 E-value=13 Score=36.49 Aligned_cols=18 Identities=22% Similarity=0.156 Sum_probs=14.7
Q ss_pred CCceEEe-CCCCchHHHHH
Q 006698 103 GNGCIIS-HAPGTGKTGLT 120 (635)
Q Consensus 103 ~~g~iLa-d~~GlGKT~~a 120 (635)
.++||+| ..+|+|||.++
T Consensus 94 ~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 94 FQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp CCEEEEEESSTTSSHHHHH
T ss_pred CceEEEEecCCCCCCCeEE
Confidence 6677777 56899999986
No 286
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=44.06 E-value=1.2e+02 Score=26.34 Aligned_cols=96 Identities=15% Similarity=0.111 Sum_probs=59.3
Q ss_pred CccccchHHHH-HHHHHhc----CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCC
Q 006698 417 DPEAGIKTRFL-LILLELS----TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPS 491 (635)
Q Consensus 417 ~~~~s~K~~~l-~~~l~~~----~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~ 491 (635)
.+..++|.... .-++... .+.++||.+..+..+.-+.+.+.......++..+..+.|+.+..+.. ....
T Consensus 47 apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~--- 120 (206)
T 1vec_A 47 AKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDI---MRLD--- 120 (206)
T ss_dssp CCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHH---HHTT---
T ss_pred CCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHH---HhcC---
Confidence 34567787543 3344332 45689999999888888888777664433478889999988755432 2233
Q ss_pred CCcEEEEEccCCcc-----cccccccCCeEEE
Q 006698 492 SQARIMLASTKACC-----EGINLVGASRVVL 518 (635)
Q Consensus 492 ~~~~vll~st~~~~-----~GlnL~~a~~vi~ 518 (635)
.++.|++++..... ..+++...+.+|+
T Consensus 121 ~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 121 DTVHVVIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp SCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred CCCCEEEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 23567776554321 1234556666665
No 287
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=43.70 E-value=76 Score=33.56 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=18.6
Q ss_pred CCceEEeCCCCchHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~ 125 (635)
.+-+.|..+.|.|||..|..++.
T Consensus 147 ~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 147 PGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEcCCCCCHHHHHHHHHh
Confidence 44578899999999988877764
No 288
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=43.58 E-value=21 Score=33.09 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=23.5
Q ss_pred EEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe
Q 006698 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA 140 (635)
Q Consensus 107 iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~ 140 (635)
+.+.--|.|||.+|+.++..+.+. ..++|+|=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~--g~~VlliD 38 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQK--GKKTVVID 38 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhC--CCcEEEEE
Confidence 445566999999999998877654 34677654
No 289
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=43.47 E-value=15 Score=34.26 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=18.4
Q ss_pred ceEEeCCCCchHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
-.+|+.++|+|||..|-.++..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 35889999999998888776543
No 290
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=43.26 E-value=13 Score=36.77 Aligned_cols=20 Identities=35% Similarity=0.390 Sum_probs=15.8
Q ss_pred CCceEEeC-CCCchHHHHHHH
Q 006698 103 GNGCIISH-APGTGKTGLTLV 122 (635)
Q Consensus 103 ~~g~iLad-~~GlGKT~~ai~ 122 (635)
.++||+|. .+|+|||.++..
T Consensus 104 ~N~tifAYGQTGSGKTyTM~G 124 (359)
T 3nwn_A 104 YNGTIMCYGQTGAGKTYTMMG 124 (359)
T ss_dssp CCEEEEEEESTTSSHHHHHTB
T ss_pred CCEEEEEeCCCCCCccEEeCC
Confidence 66787775 699999988753
No 291
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=43.24 E-value=17 Score=32.88 Aligned_cols=25 Identities=16% Similarity=0.297 Sum_probs=19.4
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
+...+|...+|+|||.++-.+...+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3467899999999998877766443
No 292
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=43.18 E-value=23 Score=34.01 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=23.6
Q ss_pred EEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe
Q 006698 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA 140 (635)
Q Consensus 107 iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~ 140 (635)
+.+-..|.|||.+|+.++..+.+. ..++|+|=
T Consensus 109 vts~kgG~GKTtva~nLA~~lA~~--G~rVLLID 140 (299)
T 3cio_A 109 ITGATPDSGKTFVSSTLAAVIAQS--DQKVLFID 140 (299)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred EECCCCCCChHHHHHHHHHHHHhC--CCcEEEEE
Confidence 344557999999999998777654 35677774
No 293
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=43.08 E-value=1.1e+02 Score=31.47 Aligned_cols=35 Identities=11% Similarity=0.017 Sum_probs=21.8
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEE
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVII 139 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv 139 (635)
+.-..|....|+|||..+-.++ .++... .+.+++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LA-gll~~~-~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLA-RQFEQQ-GKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHH-HHHHHT-TCCEEEE
T ss_pred CeEEEEECCCcccHHHHHHHHH-HHhhhc-CCeEEEe
Confidence 3345688999999996655554 443332 3456665
No 294
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=43.02 E-value=18 Score=33.13 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=20.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
....+|...+|+|||.++-.+...+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999998887777554
No 295
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=43.01 E-value=88 Score=25.00 Aligned_cols=76 Identities=8% Similarity=0.009 Sum_probs=38.2
Q ss_pred CceEEEEeCCCCHHHHHHHHHHhcC--CCCCcEEEEEccCCcccc-cccccCCeEEEeCCCCChhhHHhhhhhhhhcCC
Q 006698 465 GQEVLYMDGKQDVKKRQSSINVLND--PSSQARIMLASTKACCEG-INLVGASRVVLLDVVWNPFVERQAISRAYRLGQ 540 (635)
Q Consensus 465 g~~~~~i~G~~~~~~r~~~i~~F~~--~~~~~~vll~st~~~~~G-lnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~GQ 540 (635)
...++.++-.++...-.++++..+. ....+.|++++......- .....+...-++.-|.++....+++.++.+..+
T Consensus 54 ~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 54 KPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp CCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred CCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 4566666665544333445555543 224466666544332211 111122222233456777777777777766443
No 296
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=42.91 E-value=14 Score=35.95 Aligned_cols=41 Identities=17% Similarity=0.013 Sum_probs=28.8
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHh----CCCCCcEEEeCcc
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKL----HPRCRPVIIAPRS 143 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~----~~~~~~LIv~P~~ 143 (635)
+.-.+|+.++|+|||..++.++...... +..+++++|.-..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4567999999999999998887653221 1145678887644
No 297
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=42.80 E-value=8.8 Score=37.70 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=19.8
Q ss_pred CCceEEeCCCCchHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
.++++|..++|+|||..|-++...
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHh
Confidence 447999999999999888777643
No 298
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=42.78 E-value=16 Score=36.40 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=18.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
++.+++..++|+|||-..-+++..+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4457899999999996655555433
No 299
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=42.76 E-value=19 Score=31.49 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=18.3
Q ss_pred CCceEEeCCCCchHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~ 125 (635)
+...+|...+|+|||.++=.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999977766553
No 300
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=42.74 E-value=17 Score=33.39 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=21.7
Q ss_pred eCCCCchHHHHHHHHHHHHHHhCCCCCcEEE
Q 006698 109 SHAPGTGKTGLTLVFLQAYMKLHPRCRPVII 139 (635)
Q Consensus 109 ad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv 139 (635)
+.--|.|||.+|+.++..+.+.+ .++|+|
T Consensus 6 s~kGGvGKTt~a~~LA~~la~~g--~~Vlli 34 (254)
T 3kjh_A 6 AGKGGVGKTTVAAGLIKIMASDY--DKIYAV 34 (254)
T ss_dssp ECSSSHHHHHHHHHHHHHHTTTC--SCEEEE
T ss_pred ecCCCCCHHHHHHHHHHHHHHCC--CeEEEE
Confidence 44569999999999987776543 567665
No 301
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=42.62 E-value=31 Score=28.02 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=28.8
Q ss_pred CC-CeEEEEcC-ChhHHHHHHHHHHhhhcccCCceEEEEeCCCC
Q 006698 435 TN-EKVLVFSQ-YIEPLTLIMEQLRHRFNWREGQEVLYMDGKQD 476 (635)
Q Consensus 435 ~~-~kviIFs~-~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~ 476 (635)
++ .++||||. .-.........|... |+.+..++|++.
T Consensus 87 ~~~~~ivvyC~~~G~rs~~a~~~L~~~-----G~~v~~l~GG~~ 125 (134)
T 3g5j_A 87 LNYDNIVIYCARGGMRSGSIVNLLSSL-----GVNVYQLEGGYK 125 (134)
T ss_dssp TTCSEEEEECSSSSHHHHHHHHHHHHT-----TCCCEEETTHHH
T ss_pred cCCCeEEEEECCCChHHHHHHHHHHHc-----CCceEEEeCcHH
Confidence 55 89999994 555566777888876 888899999864
No 302
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=42.49 E-value=18 Score=34.15 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=18.9
Q ss_pred CCceEEeCCCCchHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~ 125 (635)
..|++|..++|+|||..+-+++.
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCcChHHHHHHHHHH
Confidence 45799999999999977766654
No 303
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=42.48 E-value=16 Score=36.15 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=16.0
Q ss_pred CCceEEe-CCCCchHHHHHHH
Q 006698 103 GNGCIIS-HAPGTGKTGLTLV 122 (635)
Q Consensus 103 ~~g~iLa-d~~GlGKT~~ai~ 122 (635)
.++||+| ..+|+|||.++..
T Consensus 103 ~N~tIfAYGqTGSGKTyTM~G 123 (358)
T 2nr8_A 103 YNGTIMCYGQTGAGKTYTMMG 123 (358)
T ss_dssp CCEEEEEEESTTSSHHHHHTB
T ss_pred CceEEEEECCCCCCCceEecc
Confidence 6788887 5799999988753
No 304
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=42.43 E-value=17 Score=35.66 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=15.2
Q ss_pred CCceEEe-CCCCchHHHHHH
Q 006698 103 GNGCIIS-HAPGTGKTGLTL 121 (635)
Q Consensus 103 ~~g~iLa-d~~GlGKT~~ai 121 (635)
.++||+| ..+|+|||.++.
T Consensus 83 ~n~tifAYGqTGSGKTyTm~ 102 (344)
T 4a14_A 83 FNATVFAYGQTGSGKTYTMG 102 (344)
T ss_dssp CCEEEEEESSTTSSHHHHHC
T ss_pred cCeeEEEecccCCCceEeec
Confidence 6677777 579999999874
No 305
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=42.29 E-value=27 Score=34.03 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=19.1
Q ss_pred CceEEeCCCCchHHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
..++|..++|+|||..+=+++..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 578999999999997776666443
No 306
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=42.17 E-value=23 Score=33.40 Aligned_cols=29 Identities=31% Similarity=0.567 Sum_probs=21.8
Q ss_pred eCCCCchHHHHHHHHHHHHHHhCCCCCcEEE
Q 006698 109 SHAPGTGKTGLTLVFLQAYMKLHPRCRPVII 139 (635)
Q Consensus 109 ad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv 139 (635)
+-..|.|||.+|+.++..+.+. ..++|+|
T Consensus 89 s~kgG~GKTt~a~nLA~~lA~~--G~rVLLI 117 (271)
T 3bfv_A 89 SEAPGAGKSTIAANLAVAYAQA--GYKTLIV 117 (271)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred CCCCCCcHHHHHHHHHHHHHhC--CCeEEEE
Confidence 3557999999999988777654 3467666
No 307
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=42.15 E-value=63 Score=32.76 Aligned_cols=96 Identities=20% Similarity=0.276 Sum_probs=63.0
Q ss_pred CccccchHHHHHHHHHhc---CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCC
Q 006698 417 DPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQ 493 (635)
Q Consensus 417 ~~~~s~K~~~l~~~l~~~---~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~ 493 (635)
.+..++|.......+... .+.++||.+.....+.-..+.+.+.++. ++..+..++|+.+..++..... .
T Consensus 30 ~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~---~---- 101 (494)
T 1wp9_A 30 LPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNL-PPEKIVALTGEKSPEERSKAWA---R---- 101 (494)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCS-CGGGEEEECSCSCHHHHHHHHH---H----
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCc-chhheEEeeCCcchhhhhhhcc---C----
Confidence 345677877665554443 6889999999988888888888876521 2448999999998776654432 2
Q ss_pred cEEEEEccCCccc-----ccccccCCeEEEeC
Q 006698 494 ARIMLASTKACCE-----GINLVGASRVVLLD 520 (635)
Q Consensus 494 ~~vll~st~~~~~-----GlnL~~a~~vi~~d 520 (635)
..|++++...... .+++...+.||+=+
T Consensus 102 ~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 133 (494)
T 1wp9_A 102 AKVIVATPQTIENDLLAGRISLEDVSLIVFDE 133 (494)
T ss_dssp CSEEEECHHHHHHHHHTTSCCTTSCSEEEEET
T ss_pred CCEEEecHHHHHHHHhcCCcchhhceEEEEEC
Confidence 3467766554332 34556666776633
No 308
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=42.12 E-value=19 Score=33.46 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=23.3
Q ss_pred EEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe
Q 006698 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA 140 (635)
Q Consensus 107 iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~ 140 (635)
+.+---|.|||.+++.++..+.+. ..++|+|=
T Consensus 11 v~s~kGGvGKTt~a~~LA~~la~~--g~~VlliD 42 (257)
T 1wcv_1 11 LANQKGGVGKTTTAINLAAYLARL--GKRVLLVD 42 (257)
T ss_dssp ECCSSCCHHHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred EEeCCCCchHHHHHHHHHHHHHHC--CCCEEEEE
Confidence 334566999999999998777654 34777763
No 309
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=42.10 E-value=86 Score=25.37 Aligned_cols=74 Identities=19% Similarity=0.197 Sum_probs=32.9
Q ss_pred CceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccc-cccccCCeEEEeCCCCChhhHHhhhhhhhhc
Q 006698 465 GQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEG-INLVGASRVVLLDVVWNPFVERQAISRAYRL 538 (635)
Q Consensus 465 g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~G-lnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~ 538 (635)
...++.++-.++...-..+++.++.....+.|++++...-... .....+...-++.-|.++....+++.++.+.
T Consensus 67 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 67 AFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp TCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhh
Confidence 3445555555544444444444432223345555533321111 1112233333444556666666666666553
No 310
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=41.94 E-value=19 Score=36.81 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=15.9
Q ss_pred CCceEEeC-CCCchHHHHHHH
Q 006698 103 GNGCIISH-APGTGKTGLTLV 122 (635)
Q Consensus 103 ~~g~iLad-~~GlGKT~~ai~ 122 (635)
.++||+|. .+|+|||+++..
T Consensus 136 yN~tIfAYGQTGSGKTyTM~G 156 (443)
T 2owm_A 136 YHTCIFAYGQTGSGKSYTMMG 156 (443)
T ss_dssp CCEEEEEESSTTSSHHHHHTC
T ss_pred CceEEEEeCCCCCCCCEEeec
Confidence 67888876 599999988754
No 311
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=41.77 E-value=19 Score=35.48 Aligned_cols=19 Identities=42% Similarity=0.511 Sum_probs=15.2
Q ss_pred CCceEEeC-CCCchHHHHHH
Q 006698 103 GNGCIISH-APGTGKTGLTL 121 (635)
Q Consensus 103 ~~g~iLad-~~GlGKT~~ai 121 (635)
.++||+|. .+|+|||.++.
T Consensus 84 ~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 84 YNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred ceeEEEEECCCCCCCcEecc
Confidence 66777764 68999999875
No 312
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=41.66 E-value=16 Score=36.20 Aligned_cols=20 Identities=40% Similarity=0.300 Sum_probs=15.7
Q ss_pred CCceEEeC-CCCchHHHHHHH
Q 006698 103 GNGCIISH-APGTGKTGLTLV 122 (635)
Q Consensus 103 ~~g~iLad-~~GlGKT~~ai~ 122 (635)
.++||+|. .+|+|||.++..
T Consensus 101 ~n~tifAYGqTGSGKTyTM~G 121 (372)
T 3b6u_A 101 FNGTIFAYGQTGTGKTYTMEG 121 (372)
T ss_dssp CCEEEEEEESTTSSHHHHHTB
T ss_pred CeeeEEeecCCCCCCCEeEec
Confidence 66777765 799999988754
No 313
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=41.48 E-value=17 Score=35.36 Aligned_cols=20 Identities=30% Similarity=0.243 Sum_probs=15.3
Q ss_pred CCceEEeC-CCCchHHHHHHH
Q 006698 103 GNGCIISH-APGTGKTGLTLV 122 (635)
Q Consensus 103 ~~g~iLad-~~GlGKT~~ai~ 122 (635)
.++||+|. .+|+|||.++..
T Consensus 77 ~n~tifAYGqTGSGKTyTm~G 97 (325)
T 1bg2_A 77 YNGTIFAYGQTSSGKTHTMEG 97 (325)
T ss_dssp CCEEEEEECSTTSSHHHHHTB
T ss_pred CeEEEEEECCCCCCCceEecc
Confidence 56777764 699999988754
No 314
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=41.38 E-value=18 Score=30.96 Aligned_cols=22 Identities=9% Similarity=-0.050 Sum_probs=16.9
Q ss_pred ceEEeCCCCchHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~ 126 (635)
-.+|...+|+|||.++=.+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3578899999999777666543
No 315
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=41.34 E-value=24 Score=33.58 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=24.3
Q ss_pred eEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe
Q 006698 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA 140 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~ 140 (635)
++.+--.|.|||.+|+.++..+.+. ..++|+|=
T Consensus 96 ~vts~kgG~GKTtva~nLA~~lA~~--G~rVLLID 128 (286)
T 3la6_A 96 MMTGVSPSIGMTFVCANLAAVISQT--NKRVLLID 128 (286)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHTT--TCCEEEEE
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhC--CCCEEEEe
Confidence 4555678999999999988777654 34677763
No 316
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=41.32 E-value=16 Score=34.15 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=20.7
Q ss_pred CCCCchHHHHHHHHHHHHHHhCCCCCcEEE
Q 006698 110 HAPGTGKTGLTLVFLQAYMKLHPRCRPVII 139 (635)
Q Consensus 110 d~~GlGKT~~ai~~i~~~~~~~~~~~~LIv 139 (635)
.--|.|||.+|+.++..+.+. ..++|+|
T Consensus 8 ~KGGvGKTT~a~nLA~~la~~--G~~Vlli 35 (269)
T 1cp2_A 8 GKGGIGKSTTTQNLTSGLHAM--GKTIMVV 35 (269)
T ss_dssp ECTTSSHHHHHHHHHHHHHTT--TCCEEEE
T ss_pred cCCCCcHHHHHHHHHHHHHHC--CCcEEEE
Confidence 456999999999988777644 3467664
No 317
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=41.26 E-value=15 Score=35.98 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=18.9
Q ss_pred CceEEeCCCCchHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~ 125 (635)
.-.+|+.+||+|||-.++.++.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999998888873
No 318
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=41.17 E-value=17 Score=34.86 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=23.3
Q ss_pred eEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEE
Q 006698 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVII 139 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv 139 (635)
..++.--|.|||.+|+.++..+.+. ..++|+|
T Consensus 44 I~v~~KGGvGKTT~a~nLA~~La~~--G~~Vlli 75 (307)
T 3end_A 44 FAVYGKGGIGKSTTSSNLSAAFSIL--GKRVLQI 75 (307)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred EEEECCCCccHHHHHHHHHHHHHHC--CCeEEEE
Confidence 3344678999999999988777665 3466655
No 319
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=41.14 E-value=1e+02 Score=24.27 Aligned_cols=102 Identities=13% Similarity=-0.044 Sum_probs=53.8
Q ss_pred HHHHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCC--CCCcEEEEEccCCc
Q 006698 427 LLILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDP--SSQARIMLASTKAC 504 (635)
Q Consensus 427 l~~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~--~~~~~vll~st~~~ 504 (635)
+..++. .+-.+..++.....+..+ ... ...++.++-.++...-.++++..+.. ...+.|++++...-
T Consensus 20 l~~~l~--~~~~v~~~~~~~~a~~~l----~~~-----~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~ 88 (133)
T 3nhm_A 20 LRLLLS--GEFDCTTAADGASGLQQA----LAH-----PPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAP 88 (133)
T ss_dssp HHHHHT--TTSEEEEESSHHHHHHHH----HHS-----CCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC
T ss_pred HHHHHh--CCcEEEEECCHHHHHHHH----hcC-----CCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCc
Confidence 344444 455666655544444333 332 56777887766554445555555432 23466777655432
Q ss_pred ccccccccCCeEEEeCCCCChhhHHhhhhhhhhcC
Q 006698 505 CEGINLVGASRVVLLDVVWNPFVERQAISRAYRLG 539 (635)
Q Consensus 505 ~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~G 539 (635)
..-.....+...-++.-|.++....+++.++.+.+
T Consensus 89 ~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 89 RTEGPADQPVPDAYLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp -----TTSCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HhHHHHhhcCCceEEeccCCHHHHHHHHHHHHhhh
Confidence 22222222222234556888998888888886543
No 320
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=41.08 E-value=73 Score=25.41 Aligned_cols=74 Identities=8% Similarity=0.047 Sum_probs=35.0
Q ss_pred CceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCccc-ccccccCCeEEEeCCCCChhhHHhhhhhhhhc
Q 006698 465 GQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCE-GINLVGASRVVLLDVVWNPFVERQAISRAYRL 538 (635)
Q Consensus 465 g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~-GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~ 538 (635)
...++.++-.++...-.+++...+.....+.|++++...... -.....+...-++.-|.++....+++.|+.|-
T Consensus 51 ~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 51 APDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp CCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHH
Confidence 445666665554433344444444322345555554332211 11111222223455566777777777766553
No 321
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=41.02 E-value=17 Score=36.23 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=15.4
Q ss_pred CCceEEeC-CCCchHHHHHHH
Q 006698 103 GNGCIISH-APGTGKTGLTLV 122 (635)
Q Consensus 103 ~~g~iLad-~~GlGKT~~ai~ 122 (635)
.++||+|. .+|+|||.++..
T Consensus 100 ~n~tifAYGqTGSGKTyTm~G 120 (373)
T 2wbe_C 100 YNCTVFAYGQTGTGKTHTMVG 120 (373)
T ss_dssp CCEEEEEECSTTSSHHHHHTB
T ss_pred ceEEEEeecCCCCCcceeccc
Confidence 56777765 789999988754
No 322
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=40.92 E-value=17 Score=35.99 Aligned_cols=20 Identities=30% Similarity=0.399 Sum_probs=15.6
Q ss_pred CCceEEeC-CCCchHHHHHHH
Q 006698 103 GNGCIISH-APGTGKTGLTLV 122 (635)
Q Consensus 103 ~~g~iLad-~~GlGKT~~ai~ 122 (635)
.++||+|. .+|+|||.++..
T Consensus 89 ~N~tifAYGqTGSGKTyTm~G 109 (366)
T 2zfi_A 89 YNVCIFAYGQTGAGKSYTMMG 109 (366)
T ss_dssp CCEEEEEECSTTSSHHHHHTB
T ss_pred CeeEEEEeCCCCCCCceEeeC
Confidence 66787775 599999988754
No 323
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=40.88 E-value=19 Score=35.83 Aligned_cols=20 Identities=30% Similarity=0.240 Sum_probs=15.7
Q ss_pred CCceEEeC-CCCchHHHHHHH
Q 006698 103 GNGCIISH-APGTGKTGLTLV 122 (635)
Q Consensus 103 ~~g~iLad-~~GlGKT~~ai~ 122 (635)
.++||+|. .+|+|||.++..
T Consensus 115 ~N~tifAYGqTGSGKTyTM~G 135 (376)
T 2rep_A 115 YPVCIFAYGQTGSGKTFTMEG 135 (376)
T ss_dssp CCEEEEEECSTTSSHHHHHTB
T ss_pred CceEEEEeCCCCCCCceEeec
Confidence 66787775 789999988754
No 324
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=40.81 E-value=23 Score=32.46 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=23.2
Q ss_pred EEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe
Q 006698 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA 140 (635)
Q Consensus 107 iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~ 140 (635)
+.+.--|.|||.+|+.++..+.+. ...++|+|=
T Consensus 9 v~s~kGGvGKTt~a~~LA~~la~~-~g~~VlliD 41 (245)
T 3ea0_A 9 FVSAKGGDGGSCIAANFAFALSQE-PDIHVLAVD 41 (245)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTTS-TTCCEEEEE
T ss_pred EECCCCCcchHHHHHHHHHHHHhC-cCCCEEEEE
Confidence 455567999999999988776543 244676664
No 325
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=40.78 E-value=18 Score=34.39 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=21.4
Q ss_pred eCCCCchHHHHHHHHHHHHHHhCCCCCcEEE
Q 006698 109 SHAPGTGKTGLTLVFLQAYMKLHPRCRPVII 139 (635)
Q Consensus 109 ad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv 139 (635)
+.--|.|||.+|+.++..+.+. ..++|+|
T Consensus 8 s~KGGvGKTT~a~nLA~~La~~--G~rVlli 36 (289)
T 2afh_E 8 YGKGGIGKSTTTQNLVAALAEM--GKKVMIV 36 (289)
T ss_dssp EECTTSSHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred eCCCcCcHHHHHHHHHHHHHHC--CCeEEEE
Confidence 3466999999999998777654 3466654
No 326
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=40.58 E-value=14 Score=37.14 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=15.8
Q ss_pred CCceEEeC-CCCchHHHHHHH
Q 006698 103 GNGCIISH-APGTGKTGLTLV 122 (635)
Q Consensus 103 ~~g~iLad-~~GlGKT~~ai~ 122 (635)
.++||+|. .+|+|||.++..
T Consensus 154 ~N~tifAYGQTGSGKTyTM~G 174 (410)
T 1v8k_A 154 GKATCFAYGQTGSGKTHTMGG 174 (410)
T ss_dssp CEEEEEEEESTTSSHHHHHHC
T ss_pred CceeEEeecCCCCCCCeEeec
Confidence 56777765 799999998765
No 327
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=40.39 E-value=36 Score=33.99 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=28.7
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccch
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSML 145 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~ 145 (635)
+.++++..++|+|||..+-.++..+... ..+++|+=|..-.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~--~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQ--GSRVIIIDPEREY 75 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEESSCCS
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHC--CCEEEEEeCCcCH
Confidence 5688999999999998776666555432 3456676675433
No 328
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=40.33 E-value=60 Score=26.02 Aligned_cols=23 Identities=4% Similarity=0.031 Sum_probs=13.2
Q ss_pred CeEEEEcCChhHHHHHHHHHHhh
Q 006698 437 EKVLVFSQYIEPLTLIMEQLRHR 459 (635)
Q Consensus 437 ~kviIFs~~~~~~~~l~~~L~~~ 459 (635)
.+++|..........+...|...
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~ 29 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPL 29 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTS
T ss_pred CeEEEEcCCHHHHHHHHHHHHHC
Confidence 35566666655566666666543
No 329
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=40.24 E-value=16 Score=35.31 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=19.6
Q ss_pred CCceEEeCCCCchHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
+.-.+|+.++|+|||-.+..++..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 345789999999999988888744
No 330
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=40.16 E-value=17 Score=35.75 Aligned_cols=41 Identities=17% Similarity=0.001 Sum_probs=28.4
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHh----CCCCCcEEEeCcc
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKL----HPRCRPVIIAPRS 143 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~----~~~~~~LIv~P~~ 143 (635)
+.-++|+.++|+|||..++.++...... +..+++++|.-..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4457899999999999988887543221 1245678887644
No 331
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=40.11 E-value=20 Score=30.69 Aligned_cols=24 Identities=21% Similarity=0.211 Sum_probs=18.8
Q ss_pred CceEEeCCCCchHHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
...+|...+|+|||.++=.+...+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999998876665433
No 332
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=39.92 E-value=38 Score=27.31 Aligned_cols=36 Identities=14% Similarity=0.060 Sum_probs=29.5
Q ss_pred CCCeEEEEcCChhH--HHHHHHHHHhhhcccCCceEEEEeCCC
Q 006698 435 TNEKVLVFSQYIEP--LTLIMEQLRHRFNWREGQEVLYMDGKQ 475 (635)
Q Consensus 435 ~~~kviIFs~~~~~--~~~l~~~L~~~~~~~~g~~~~~i~G~~ 475 (635)
++.++||||..-.. .......|... |+++..+.|++
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~-----G~~v~~l~GG~ 107 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSA-----GFEAYELAGAL 107 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHH-----TCEEEEETTHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHc-----CCeEEEeCCcH
Confidence 67789999998655 67778888887 99988899985
No 333
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=39.91 E-value=31 Score=36.40 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=28.8
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCc-EEEe-Ccc
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIA-PRS 143 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~-LIv~-P~~ 143 (635)
...++++..+|+|||...-+++.+++.......+ ++++ |+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 4679999999999998888888777654432222 4444 554
No 334
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=39.84 E-value=19 Score=35.74 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=15.1
Q ss_pred CCceEEe-CCCCchHHHHHHH
Q 006698 103 GNGCIIS-HAPGTGKTGLTLV 122 (635)
Q Consensus 103 ~~g~iLa-d~~GlGKT~~ai~ 122 (635)
.++||+| ..+|+|||.++..
T Consensus 84 ~n~tifAYGqTGSGKTyTm~G 104 (365)
T 2y65_A 84 YNGTIFAYGQTSSGKTHTMEG 104 (365)
T ss_dssp CCEEEEEECSTTSSHHHHHTB
T ss_pred CceEEEeecCCCCCCceEEec
Confidence 5677766 4699999988754
No 335
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=39.56 E-value=31 Score=26.52 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=30.5
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCC
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~ 475 (635)
++.++|+||..-.........|... |+++..++|++
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~-----G~~v~~l~GG~ 90 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQN-----GVNAVNVEGGM 90 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTT-----TCEEEEETTHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHC-----CCCEEEecccH
Confidence 5689999999877777888888886 88999999984
No 336
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=39.52 E-value=21 Score=35.22 Aligned_cols=20 Identities=35% Similarity=0.373 Sum_probs=15.6
Q ss_pred CCceEEe-CCCCchHHHHHHH
Q 006698 103 GNGCIIS-HAPGTGKTGLTLV 122 (635)
Q Consensus 103 ~~g~iLa-d~~GlGKT~~ai~ 122 (635)
.++||+| ..+|+|||.++..
T Consensus 105 ~n~tifAYGqTGSGKTyTm~G 125 (355)
T 3lre_A 105 YNCTVLAYGATGAGKTHTMLG 125 (355)
T ss_dssp CCEEEEEECCTTSSHHHHHTB
T ss_pred CceEEEEeCCCCCCceeeecc
Confidence 6677776 5799999988753
No 337
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=39.44 E-value=17 Score=31.34 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=17.3
Q ss_pred CceEEeCCCCchHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~ 125 (635)
.-.+|...||+|||..+=.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999977666553
No 338
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=39.36 E-value=20 Score=35.38 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=18.0
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
++-.++..++|+|||-..-+++..+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3357899999999996655555433
No 339
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=39.27 E-value=1.1e+02 Score=24.34 Aligned_cols=66 Identities=20% Similarity=0.133 Sum_probs=42.8
Q ss_pred HHHHHHHhcCCCeEEEEcC------ChhHHHHHHHHHHhhhcccCCce-EEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 006698 426 FLLILLELSTNEKVLVFSQ------YIEPLTLIMEQLRHRFNWREGQE-VLYMDGKQDVKKRQSSINVLNDPSSQARIML 498 (635)
Q Consensus 426 ~l~~~l~~~~~~kviIFs~------~~~~~~~l~~~L~~~~~~~~g~~-~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll 498 (635)
.+.+++. ..+|+||+. +-.......++|... |++ +..++=....+.++.+.+.... ..+.++.
T Consensus 12 ~v~~~i~---~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~-----gv~~~~~vdV~~d~~~~~~l~~~tg~--~tvP~vf 81 (118)
T 2wem_A 12 QLDALVK---KDKVVVFLKGTPEQPQCGFSNAVVQILRLH-----GVRDYAAYNVLDDPELRQGIKDYSNW--PTIPQVY 81 (118)
T ss_dssp HHHHHHH---HSSEEEEESBCSSSBSSHHHHHHHHHHHHT-----TCCCCEEEESSSCHHHHHHHHHHHTC--CSSCEEE
T ss_pred HHHHHhc---cCCEEEEEecCCCCCccHHHHHHHHHHHHc-----CCCCCEEEEcCCCHHHHHHHHHHhCC--CCcCeEE
Confidence 3444444 568999998 577788899999987 885 8888766665656555444332 2344444
Q ss_pred Ecc
Q 006698 499 AST 501 (635)
Q Consensus 499 ~st 501 (635)
+.-
T Consensus 82 I~g 84 (118)
T 2wem_A 82 LNG 84 (118)
T ss_dssp ETT
T ss_pred ECC
Confidence 443
No 340
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=38.85 E-value=20 Score=31.22 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=18.8
Q ss_pred CceEEeCCCCchHHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
.-.+|...+|+|||.++=.+...+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999998877766544
No 341
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=38.82 E-value=23 Score=32.10 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=19.6
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
.+-.+|..++|+|||.+|-.+...+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556789999999999887776544
No 342
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=38.80 E-value=18 Score=33.04 Aligned_cols=39 Identities=15% Similarity=0.035 Sum_probs=25.8
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhC----CCCCcEEEeC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLH----PRCRPVIIAP 141 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~----~~~~~LIv~P 141 (635)
+.-.+|..+.|+|||..+..++....... ...+++++.-
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 45678999999999988888775422110 1345666665
No 343
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=38.77 E-value=19 Score=31.56 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=19.0
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
+.-.+|...+|+|||.++-.+...+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3457899999999998876665443
No 344
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=38.75 E-value=19 Score=35.53 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=15.2
Q ss_pred CCceEEe-CCCCchHHHHHHH
Q 006698 103 GNGCIIS-HAPGTGKTGLTLV 122 (635)
Q Consensus 103 ~~g~iLa-d~~GlGKT~~ai~ 122 (635)
.++||+| ..+|+|||.++..
T Consensus 80 ~n~tifAYGqTGSGKTyTm~G 100 (355)
T 1goj_A 80 YNGTVFAYGQTGAGKSYTMMG 100 (355)
T ss_dssp CCEEEEEECSTTSSHHHHHTB
T ss_pred CcceEEEECCCCCCcceEeec
Confidence 5677776 5699999988753
No 345
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=38.21 E-value=23 Score=32.00 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=19.6
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
....+|...+|+|||.++=.+...+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999998877766443
No 346
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=38.16 E-value=21 Score=34.56 Aligned_cols=29 Identities=24% Similarity=0.224 Sum_probs=21.3
Q ss_pred eCCCCchHHHHHHHHHHHHHHhCCCCCcEEE
Q 006698 109 SHAPGTGKTGLTLVFLQAYMKLHPRCRPVII 139 (635)
Q Consensus 109 ad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv 139 (635)
+.==|.|||-+++-++.++.+.+. ++|+|
T Consensus 54 aGKGGVGKTTtavNLA~aLA~~Gk--kVllI 82 (314)
T 3fwy_A 54 YGKGGIGKSTTSSNLSAAFSILGK--RVLQI 82 (314)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTTC--CEEEE
T ss_pred ECCCccCHHHHHHHHHHHHHHCCC--eEEEE
Confidence 344589999999998888776543 56655
No 347
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=38.02 E-value=27 Score=34.07 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=25.9
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA 140 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~ 140 (635)
=++...-.|.|||.+|.+++..+.+. ..++|+|-
T Consensus 21 i~v~sgkGGvGKTTva~~LA~~lA~~--G~rVllvD 54 (329)
T 2woo_A 21 WIFVGGKGGVGKTTTSCSLAIQMSKV--RSSVLLIS 54 (329)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHTS--SSCEEEEE
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHC--CCeEEEEE
Confidence 45677888999999999998777654 34677664
No 348
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=37.93 E-value=1.1e+02 Score=23.80 Aligned_cols=58 Identities=21% Similarity=0.135 Sum_probs=40.4
Q ss_pred CCCeEEEEcC------ChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEE
Q 006698 435 TNEKVLVFSQ------YIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499 (635)
Q Consensus 435 ~~~kviIFs~------~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~ 499 (635)
...+|+||+. +-.....+..+|... |+.+..++=......++.+.+.... ..+.++.+
T Consensus 13 ~~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~-----~i~~~~vdi~~~~~~~~~l~~~~g~--~~vP~ifi 76 (109)
T 1wik_A 13 NKASVMLFMKGNKQEAKCGFSKQILEILNST-----GVEYETFDILEDEEVRQGLKTFSNW--PTYPQLYV 76 (109)
T ss_dssp TTSSEEEEESSTTTCCCSSTHHHHHHHHHHT-----CSCEEEEESSSCHHHHHHHHHHHSC--CSSCEEEC
T ss_pred ccCCEEEEEecCCCCCCCchHHHHHHHHHHc-----CCCeEEEECCCCHHHHHHHHHHhCC--CCCCEEEE
Confidence 4567999987 344577888889887 9999999887776666666665543 23444443
No 349
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=37.91 E-value=1.2e+02 Score=23.64 Aligned_cols=21 Identities=10% Similarity=-0.092 Sum_probs=10.1
Q ss_pred eEEEEcCChhHHHHHHHHHHh
Q 006698 438 KVLVFSQYIEPLTLIMEQLRH 458 (635)
Q Consensus 438 kviIFs~~~~~~~~l~~~L~~ 458 (635)
+++|..........+...|..
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~ 25 (126)
T 1dbw_A 5 TVHIVDDEEPVRKSLAFMLTM 25 (126)
T ss_dssp EEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHh
Confidence 444544444444444444443
No 350
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=37.78 E-value=30 Score=34.12 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=26.8
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
=++...--|.|||.+|++++..+.+....+++|+|-.
T Consensus 20 i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~ 56 (354)
T 2woj_A 20 WIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIST 56 (354)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 3566678899999999999877762133457877765
No 351
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=37.69 E-value=31 Score=26.64 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=30.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCC
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~ 475 (635)
++.++|+||..-.........|... |+.+..+.|++
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~-----G~~v~~l~GG~ 90 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEAN-----GIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTT-----TCEEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHC-----CCCeEEeCCCH
Confidence 5678999999877777788888877 88999999984
No 352
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=37.56 E-value=25 Score=35.81 Aligned_cols=39 Identities=26% Similarity=0.256 Sum_probs=27.6
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCcc
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRS 143 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~ 143 (635)
..++++...+|+|||...-.++...+..+ .+++|+=|+.
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g--~~viv~Dpkg 91 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRG--DRMVIVDPNG 91 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTT--CEEEEEEETT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEeCCC
Confidence 56889999999999987655665555433 3556666754
No 353
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=37.51 E-value=19 Score=35.54 Aligned_cols=20 Identities=35% Similarity=0.157 Sum_probs=15.3
Q ss_pred CCceEEeC-CCCchHHHHHHH
Q 006698 103 GNGCIISH-APGTGKTGLTLV 122 (635)
Q Consensus 103 ~~g~iLad-~~GlGKT~~ai~ 122 (635)
.++||+|. .+|+|||.++..
T Consensus 88 ~n~tifAYGqTGSGKTyTM~G 108 (359)
T 1x88_A 88 YNCTIFAYGQTGTGKTFTMEG 108 (359)
T ss_dssp CEEEEEEEECTTSSHHHHHTB
T ss_pred CceEEEEeCCCCCCCceEEec
Confidence 56777765 689999988754
No 354
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=37.49 E-value=73 Score=30.13 Aligned_cols=38 Identities=11% Similarity=0.087 Sum_probs=26.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
+.-++|+.+.|+|||..+..++..+... ...+++++..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~-~G~~v~~~~~ 72 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTA-MGKKVGLAML 72 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHT-SCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHH-cCCeEEEEeC
Confidence 4567899999999998877776554433 1225666654
No 355
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=37.44 E-value=1.2e+02 Score=24.22 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=11.9
Q ss_pred CeEEEEcCChhHHHHHHHHHHh
Q 006698 437 EKVLVFSQYIEPLTLIMEQLRH 458 (635)
Q Consensus 437 ~kviIFs~~~~~~~~l~~~L~~ 458 (635)
-+++|..........+...|..
T Consensus 10 ~~iLivdd~~~~~~~l~~~L~~ 31 (143)
T 2qv0_A 10 MKVIIVEDEFLAQQELSWLINT 31 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHh
Confidence 3455555555555555555554
No 356
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=37.28 E-value=18 Score=35.54 Aligned_cols=20 Identities=30% Similarity=0.152 Sum_probs=15.2
Q ss_pred CCceEEe-CCCCchHHHHHHH
Q 006698 103 GNGCIIS-HAPGTGKTGLTLV 122 (635)
Q Consensus 103 ~~g~iLa-d~~GlGKT~~ai~ 122 (635)
.++||+| ..+|+|||.++..
T Consensus 89 ~n~tifAYGqTGSGKTyTm~G 109 (350)
T 2vvg_A 89 FNSTIFAYGQTGAGKTWTMGG 109 (350)
T ss_dssp CCEEEEEECSTTSSHHHHHTB
T ss_pred CceeEEeecCCCCCCCEEeec
Confidence 5677776 5699999988743
No 357
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=37.22 E-value=88 Score=25.57 Aligned_cols=25 Identities=12% Similarity=-0.067 Sum_probs=14.2
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhh
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHR 459 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~ 459 (635)
.+.+|+|..........+...|...
T Consensus 14 ~~~~iLivdd~~~~~~~l~~~L~~~ 38 (152)
T 3eul_A 14 EKVRVVVGDDHPLFREGVVRALSLS 38 (152)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHH
T ss_pred ceEEEEEEcCCHHHHHHHHHHHhhC
Confidence 3445666666555556666666554
No 358
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=37.03 E-value=83 Score=28.04 Aligned_cols=96 Identities=13% Similarity=0.006 Sum_probs=54.2
Q ss_pred CccccchHHH-HHHHHHhc----CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCC
Q 006698 417 DPEAGIKTRF-LLILLELS----TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPS 491 (635)
Q Consensus 417 ~~~~s~K~~~-l~~~l~~~----~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~ 491 (635)
.+..++|... +.-++... .+.++||.+..+..+.-+.+.+...... .+..+..+.|+.+..++.. .+.
T Consensus 58 ~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~---~~~--- 130 (224)
T 1qde_A 58 AQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFH-MDIKVHACIGGTSFVEDAE---GLR--- 130 (224)
T ss_dssp CCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTT-SCCCEEEECC-------------CT---
T ss_pred CCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcc-cCceEEEEeCCcchHHHHh---cCC---
Confidence 3556788866 44455433 5668999999988887777777654322 3788888999876443322 222
Q ss_pred CCcEEEEEccCCc-----ccccccccCCeEEEeC
Q 006698 492 SQARIMLASTKAC-----CEGINLVGASRVVLLD 520 (635)
Q Consensus 492 ~~~~vll~st~~~-----~~GlnL~~a~~vi~~d 520 (635)
+..|++++.... ...+++...+.||+=+
T Consensus 131 -~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDE 163 (224)
T 1qde_A 131 -DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 163 (224)
T ss_dssp -TCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred -CCCEEEECHHHHHHHHHhCCcchhhCcEEEEcC
Confidence 255777655432 2244555666666533
No 359
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=36.73 E-value=17 Score=35.24 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=19.4
Q ss_pred CceEEeCCCCchHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
...+|+.++|+|||-.+..++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36799999999999988887754
No 360
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=36.71 E-value=21 Score=31.18 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=18.0
Q ss_pred ceEEeCCCCchHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
-.+|...+|+|||.++-.+...+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 35788899999998877776554
No 361
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=36.66 E-value=89 Score=25.48 Aligned_cols=17 Identities=6% Similarity=-0.201 Sum_probs=9.7
Q ss_pred CCCChhhHHhhhhhhhh
Q 006698 521 VVWNPFVERQAISRAYR 537 (635)
Q Consensus 521 ~~wnp~~~~Qa~gR~~R 537 (635)
-|.++....+++.++.+
T Consensus 123 Kp~~~~~l~~~i~~~~~ 139 (150)
T 4e7p_A 123 KERSIADLMQTLHTVLE 139 (150)
T ss_dssp TTSCHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHc
Confidence 45566666666655554
No 362
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=36.57 E-value=25 Score=30.22 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=18.4
Q ss_pred ceEEeCCCCchHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
..+|...+|+|||..+-.+...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 57899999999998877766443
No 363
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=36.54 E-value=93 Score=23.96 Aligned_cols=16 Identities=13% Similarity=0.156 Sum_probs=9.0
Q ss_pred CCCCChhhHHhhhhhh
Q 006698 520 DVVWNPFVERQAISRA 535 (635)
Q Consensus 520 d~~wnp~~~~Qa~gR~ 535 (635)
.-|+++....+++.++
T Consensus 103 ~KP~~~~~l~~~i~~~ 118 (120)
T 1tmy_A 103 VKPFQPSRVVEALNKV 118 (120)
T ss_dssp ESSCCHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHH
Confidence 3455666666665554
No 364
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=36.53 E-value=19 Score=35.46 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=15.3
Q ss_pred CCceEEeC-CCCchHHHHHHH
Q 006698 103 GNGCIISH-APGTGKTGLTLV 122 (635)
Q Consensus 103 ~~g~iLad-~~GlGKT~~ai~ 122 (635)
.++||+|. .+|+|||.++..
T Consensus 77 ~n~tifAYGqTGSGKTyTM~G 97 (349)
T 1t5c_A 77 YNGTIFAYGQTASGKTYTMMG 97 (349)
T ss_dssp CCEEEEEEESTTSSHHHHHTB
T ss_pred CccceeeecCCCCCCCeEEec
Confidence 56777764 799999988753
No 365
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=36.47 E-value=29 Score=32.94 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=27.5
Q ss_pred EEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe--C-ccchHHHHH
Q 006698 107 IISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA--P-RSMLLTWEE 150 (635)
Q Consensus 107 iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~--P-~~l~~qW~~ 150 (635)
+.+---|.|||.+++.++..+.+. ..++|+|= | ..-+..|..
T Consensus 9 v~s~KGGvGKTT~a~nLA~~La~~--G~~VlliD~D~~q~~l~~~l~ 53 (286)
T 2xj4_A 9 VGNEKGGAGKSTIAVHLVTALLYG--GAKVAVIDLDLRQRTSARFFE 53 (286)
T ss_dssp ECCSSSCTTHHHHHHHHHHHHHHT--TCCEEEEECCTTTCHHHHHHH
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCCCCCHHHHhC
Confidence 334556999999999998777654 34666653 4 444555543
No 366
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=36.44 E-value=21 Score=36.08 Aligned_cols=20 Identities=35% Similarity=0.311 Sum_probs=15.8
Q ss_pred CCceEEe-CCCCchHHHHHHH
Q 006698 103 GNGCIIS-HAPGTGKTGLTLV 122 (635)
Q Consensus 103 ~~g~iLa-d~~GlGKT~~ai~ 122 (635)
.++||+| ..+|+|||.++..
T Consensus 138 ~n~tifAYGqTGSGKTyTM~G 158 (412)
T 3u06_A 138 YNICIFAYGQTGSGKTYTMDG 158 (412)
T ss_dssp CCEEEEEESSTTSSHHHHHTE
T ss_pred CceEEEEecCCCCCCeeEecC
Confidence 6677777 5799999988754
No 367
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=36.25 E-value=36 Score=33.41 Aligned_cols=46 Identities=15% Similarity=0.074 Sum_probs=30.1
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC--ccchHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP--RSMLLTWE 149 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P--~~l~~qW~ 149 (635)
+=+++..--|.|||.+|++++..+.......++|+|-- .+-+..|.
T Consensus 19 ~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~~~l~~~~ 66 (348)
T 3io3_A 19 KWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPAHNLSDAF 66 (348)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSSCHHHHHH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCCCChHHHh
Confidence 34566677899999999998877652134557776653 44444443
No 368
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=36.16 E-value=25 Score=30.84 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=19.3
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
+.-.+|...+|+|||.++-.+...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4467899999999998877766443
No 369
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=36.11 E-value=35 Score=36.37 Aligned_cols=37 Identities=14% Similarity=0.140 Sum_probs=28.2
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
.+-.++..-.|.|||.+|++++..+.+. ..++|+|--
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~--G~rVLlvd~ 44 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQ--GKRVLLVST 44 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHC--CCcEEEEEC
Confidence 3456778889999999999998887665 346777653
No 370
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=35.99 E-value=19 Score=30.71 Aligned_cols=18 Identities=28% Similarity=0.660 Sum_probs=14.7
Q ss_pred eEEeCCCCchHHHHHHHH
Q 006698 106 CIISHAPGTGKTGLTLVF 123 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~ 123 (635)
.+|...+|+|||.++-.+
T Consensus 4 I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 578899999999776655
No 371
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=35.97 E-value=29 Score=30.65 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=18.2
Q ss_pred ceEEeCCCCchHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
..+|...+|+|||.++-.+...+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999998877666443
No 372
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=35.79 E-value=21 Score=31.01 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=18.0
Q ss_pred CceEEeCCCCchHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
...+|...+|+|||.++-.+...
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35788999999999877666543
No 373
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=35.55 E-value=26 Score=32.75 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=22.6
Q ss_pred eEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEE
Q 006698 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVII 139 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv 139 (635)
++.+.--|.|||.+|+.++..+. . ..++|+|
T Consensus 31 ~v~s~kGGvGKTT~a~~LA~~la-~--g~~Vlli 61 (267)
T 3k9g_A 31 TIASIKGGVGKSTSAIILATLLS-K--NNKVLLI 61 (267)
T ss_dssp EECCSSSSSCHHHHHHHHHHHHT-T--TSCEEEE
T ss_pred EEEeCCCCchHHHHHHHHHHHHH-C--CCCEEEE
Confidence 34466779999999999887765 3 3567665
No 374
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=35.48 E-value=1.3e+02 Score=23.96 Aligned_cols=65 Identities=22% Similarity=0.194 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCCeEEEEcCC------hhHHHHHHHHHHhhhcccCCc-eEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEE
Q 006698 426 FLLILLELSTNEKVLVFSQY------IEPLTLIMEQLRHRFNWREGQ-EVLYMDGKQDVKKRQSSINVLNDPSSQARIML 498 (635)
Q Consensus 426 ~l~~~l~~~~~~kviIFs~~------~~~~~~l~~~L~~~~~~~~g~-~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll 498 (635)
.+.+++. ..+|+||+.. -.......+.|... |+ +|..++=...++.|+.+.+.-+. ..=.+|+|
T Consensus 12 ~i~~~i~---~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~-----gv~~~~~~~v~~~~~~r~~l~~~sg~-~TvPqIFI 82 (118)
T 2wul_A 12 QLDALVK---KDKVVVFLKGTPEQPQCGFSNAVVQILRLH-----GVRDYAAYNVLDDPELRQGIKDYSNW-PTIPQVYL 82 (118)
T ss_dssp HHHHHHH---HSSEEEEESBCSSSBSSHHHHHHHHHHHHT-----TCCSCEEEETTSCHHHHHHHHHHHTC-CSSCEEEE
T ss_pred HHHHHHh---cCCEEEEEcCCCCCCCCHHHHHHHHHHHHh-----CCcCeEeecccCCHHHHHHHHHhccC-CCCCeEeE
Confidence 3445554 5789999763 45677778888876 76 47777766666666555544443 34456666
Q ss_pred E
Q 006698 499 A 499 (635)
Q Consensus 499 ~ 499 (635)
-
T Consensus 83 ~ 83 (118)
T 2wul_A 83 N 83 (118)
T ss_dssp T
T ss_pred C
Confidence 3
No 375
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=35.48 E-value=28 Score=30.22 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=18.2
Q ss_pred ceEEeCCCCchHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
..+|...+|+|||.+|-.+...+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999998877766433
No 376
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=35.46 E-value=69 Score=36.87 Aligned_cols=97 Identities=15% Similarity=0.161 Sum_probs=64.6
Q ss_pred CccccchHHHHHHHHHhc--CCCeEEEEcCChhHHHHHHHHHHhhhcccCCc----eEEEEeCCCCHHHHHHHHHHhcCC
Q 006698 417 DPEAGIKTRFLLILLELS--TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQ----EVLYMDGKQDVKKRQSSINVLNDP 490 (635)
Q Consensus 417 ~~~~s~K~~~l~~~l~~~--~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~----~~~~i~G~~~~~~r~~~i~~F~~~ 490 (635)
.+..++|..+.+-++... .+.++||.+..+..+.-+.+.+...+... ++ .+..++|+.+..++....+.+.+
T Consensus 78 apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~- 155 (1054)
T 1gku_B 78 APTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKA-GVGTENLIGYYHGRIPKREKENFMQNLRN- 155 (1054)
T ss_dssp CCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTT-CCSGGGSEEECCSSCCSHHHHHHHHSGGG-
T ss_pred cCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhc-CCCccceEEEEeCCCChhhHHHHHhhccC-
Confidence 355688886544444433 67899999999988887777777654322 56 88999999998887777777764
Q ss_pred CCCcEEEEEccCCcccccc-cccCCeEEE
Q 006698 491 SSQARIMLASTKACCEGIN-LVGASRVVL 518 (635)
Q Consensus 491 ~~~~~vll~st~~~~~Gln-L~~a~~vi~ 518 (635)
+.|+++++...-.-+. |...+.||+
T Consensus 156 ---~~IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 156 ---FKIVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp ---CSEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred ---CCEEEEcHHHHHHHHHHhccCCEEEE
Confidence 5577766544332222 445555554
No 377
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=35.44 E-value=25 Score=31.60 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=17.7
Q ss_pred eEEeCCCCchHHHHHHHHHHHH
Q 006698 106 CIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~ 127 (635)
.+|..++|+|||.+|-.++..+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4778899999999987776544
No 378
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=35.31 E-value=74 Score=35.05 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=20.6
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
+.+|..++|+|||..|-++...+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~ 546 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF 546 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 589999999999999988876653
No 379
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=35.22 E-value=87 Score=32.55 Aligned_cols=95 Identities=16% Similarity=0.186 Sum_probs=56.3
Q ss_pred CccccchHHHHHHHH----HhcC---CCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcC
Q 006698 417 DPEAGIKTRFLLILL----ELST---NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND 489 (635)
Q Consensus 417 ~~~~s~K~~~l~~~l----~~~~---~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~ 489 (635)
.+..++|.....-.+ ...+ +.++||.+..+..+.-..+.+...+... ++.+..++|+.+...+...+. .
T Consensus 26 ~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~--~- 101 (555)
T 3tbk_A 26 APTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERL-GYNIASISGATSDSVSVQHII--E- 101 (555)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT-TCCEEEECTTTGGGSCHHHHH--H-
T ss_pred eCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccC-CcEEEEEcCCCcchhhHHHHh--c-
Confidence 345677876533322 2222 7899999999887776666666554322 789999999986554432222 1
Q ss_pred CCCCcEEEEEccCCcccc-----c-ccccCCeEEE
Q 006698 490 PSSQARIMLASTKACCEG-----I-NLVGASRVVL 518 (635)
Q Consensus 490 ~~~~~~vll~st~~~~~G-----l-nL~~a~~vi~ 518 (635)
+..|+++++.....- + ++...+.||+
T Consensus 102 ---~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 133 (555)
T 3tbk_A 102 ---DNDIIILTPQILVNNLNNGAIPSLSVFTLMIF 133 (555)
T ss_dssp ---HCSEEEECHHHHHHHHHTSSSCCGGGCSEEEE
T ss_pred ---CCCEEEECHHHHHHHHhcCcccccccCCEEEE
Confidence 244677655543221 2 4555666665
No 380
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=35.21 E-value=34 Score=35.52 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=27.2
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
....+++...|+|||.++..++..+.+. ..++++|..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~--G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRK--GWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEec
Confidence 4456777889999999988888766543 356777775
No 381
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=34.83 E-value=37 Score=26.40 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=29.3
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCC
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~ 475 (635)
+++++++||..-.........|... |++.+.+.|++
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~-----G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEAN-----GIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTT-----TCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHc-----CCCEEEecChH
Confidence 5778999998866666777888887 99988898884
No 382
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=34.69 E-value=21 Score=34.99 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=19.1
Q ss_pred ceEEeCCCCchHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
-.+|+.++|+|||-.|..++..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 57899999999999888877543
No 383
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=34.55 E-value=1.2e+02 Score=24.35 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=12.7
Q ss_pred CeEEEEcCChhHHHHHHHHHHhh
Q 006698 437 EKVLVFSQYIEPLTLIMEQLRHR 459 (635)
Q Consensus 437 ~kviIFs~~~~~~~~l~~~L~~~ 459 (635)
.+|+|..........+...|...
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~ 28 (144)
T 3kht_A 6 KRVLVVEDNPDDIALIRRVLDRK 28 (144)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHT
T ss_pred CEEEEEeCCHHHHHHHHHHHHhc
Confidence 34555555555555555555554
No 384
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=34.49 E-value=18 Score=34.94 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=18.4
Q ss_pred ceEEeCCCCchHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~ 126 (635)
-.+|+.++|+|||-.++.++..
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4688999999999888887743
No 385
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=34.49 E-value=26 Score=30.54 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=17.9
Q ss_pred CceEEeCCCCchHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
.-.+|...+|+|||.++-.+...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35788999999999887666543
No 386
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=34.41 E-value=17 Score=36.13 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=15.4
Q ss_pred CCceEEe-CCCCchHHHHHHH
Q 006698 103 GNGCIIS-HAPGTGKTGLTLV 122 (635)
Q Consensus 103 ~~g~iLa-d~~GlGKT~~ai~ 122 (635)
.++||+| ..+|+|||.++..
T Consensus 79 ~n~tifAYGqTGSGKTyTM~G 99 (369)
T 3cob_A 79 YNVCIFAYGQTGSGKTFTIYG 99 (369)
T ss_dssp CEEEEEEEECTTSSHHHHHTB
T ss_pred CceEEEEECCCCCCCeEeecC
Confidence 6677776 5799999988753
No 387
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=34.25 E-value=74 Score=26.16 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=40.1
Q ss_pred CCeEEEEcC------ChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEE
Q 006698 436 NEKVLVFSQ------YIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499 (635)
Q Consensus 436 ~~kviIFs~------~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~ 499 (635)
..+|+||+. +-.....+.++|... |++|..++=...++.++.+.+.... ..+.++.+
T Consensus 34 ~~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~-----gv~y~~vdI~~d~~~~~~L~~~~G~--~tvP~VfI 96 (135)
T 2wci_A 34 ENPILLYMKGSPKLPSCGFSAQAVQALAAC-----GERFAYVDILQNPDIRAELPKYANW--PTFPQLWV 96 (135)
T ss_dssp HCSEEEEESBCSSSBSSHHHHHHHHHHHTT-----CSCCEEEEGGGCHHHHHHHHHHHTC--CSSCEEEE
T ss_pred cCCEEEEEEecCCCCCCccHHHHHHHHHHc-----CCceEEEECCCCHHHHHHHHHHHCC--CCcCEEEE
Confidence 458999987 566788889999887 8999888877666666666555543 23434443
No 388
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=33.92 E-value=23 Score=30.45 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=16.3
Q ss_pred ceEEeCCCCchHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFL 124 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i 124 (635)
-.++...+|+|||.++-.+.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~ 23 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFI 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHH
Confidence 46889999999998776655
No 389
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=33.83 E-value=27 Score=30.97 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=18.1
Q ss_pred CceEEeCCCCchHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
.-.+|...+|+|||..+=.+...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999776665543
No 390
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=33.58 E-value=20 Score=34.59 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.2
Q ss_pred CCCceEEeCCCCchHHHHHHHHH
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFL 124 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i 124 (635)
.+.|+++..+.|+|||-.|+.++
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~ 168 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLI 168 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Confidence 36789999999999998888876
No 391
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=33.47 E-value=27 Score=30.72 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=16.8
Q ss_pred eEEeCCCCchHHHHHHHHHHHH
Q 006698 106 CIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~ 127 (635)
.+|...+|+|||.++-.+...+
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHhc
Confidence 4678889999998777666443
No 392
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=33.46 E-value=1.5e+02 Score=23.10 Aligned_cols=20 Identities=10% Similarity=0.016 Sum_probs=10.8
Q ss_pred CCCCChhhHHhhhhhhhhcC
Q 006698 520 DVVWNPFVERQAISRAYRLG 539 (635)
Q Consensus 520 d~~wnp~~~~Qa~gR~~R~G 539 (635)
.-|.++....+++.++.+.+
T Consensus 105 ~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 105 EKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp ESSCCHHHHHHHHHHHHHTT
T ss_pred eCCCCHHHHHHHHHHHHhcC
Confidence 34555555555555555543
No 393
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=33.42 E-value=45 Score=25.13 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=28.8
Q ss_pred CeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCC
Q 006698 437 EKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQD 476 (635)
Q Consensus 437 ~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~ 476 (635)
.++++||+.-.........|... |+.+..++|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~-----G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAE-----GYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHH-----TCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHc-----CCcEEEEcccHH
Confidence 78999999877777788888887 888778889864
No 394
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=33.37 E-value=45 Score=26.73 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=23.6
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCC-ceEEEE
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREG-QEVLYM 471 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g-~~~~~i 471 (635)
...+++|..........+...|... | +.+...
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~-----g~~~v~~~ 45 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDAL-----AIYDVRVS 45 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHT-----SSEEEEEE
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhc-----CCeEEEEe
Confidence 3457888888888888888888875 6 655533
No 395
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=33.31 E-value=29 Score=29.60 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=17.5
Q ss_pred ceEEeCCCCchHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~ 126 (635)
..+|...+|+|||.++-.+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5688899999999877766543
No 396
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=33.29 E-value=22 Score=33.84 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=18.4
Q ss_pred CCceEEeCCCCchHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~ 125 (635)
+.-.+|+..+|+|||..+-.++.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999977766653
No 397
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=33.24 E-value=27 Score=31.23 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=17.0
Q ss_pred eEEeCCCCchHHHHHHHHHHHH
Q 006698 106 CIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~ 127 (635)
.+|...+|+|||.++=.+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788999999998877665443
No 398
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=33.21 E-value=2e+02 Score=25.94 Aligned_cols=96 Identities=15% Similarity=0.032 Sum_probs=57.9
Q ss_pred ccccchHHH-HHHHHHh---------cCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHh
Q 006698 418 PEAGIKTRF-LLILLEL---------STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVL 487 (635)
Q Consensus 418 ~~~s~K~~~-l~~~l~~---------~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F 487 (635)
+..++|... +.-++.. ..+.++||.+..+..+.-+.+.+...... .++.+..+.|+.+...+...+..
T Consensus 74 pTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~- 151 (242)
T 3fe2_A 74 QTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRA-CRLKSTCIYGGAPKGPQIRDLER- 151 (242)
T ss_dssp CTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHH-
T ss_pred CCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhh-cCceEEEEECCCChHHHHHHhcC-
Confidence 456778655 3333322 14668999999988777766666553222 27889999999887655444432
Q ss_pred cCCCCCcEEEEEccCCcc-----cccccccCCeEEEeC
Q 006698 488 NDPSSQARIMLASTKACC-----EGINLVGASRVVLLD 520 (635)
Q Consensus 488 ~~~~~~~~vll~st~~~~-----~GlnL~~a~~vi~~d 520 (635)
++.|++++..... ..+++...+.+|+=+
T Consensus 152 -----~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDE 184 (242)
T 3fe2_A 152 -----GVEICIATPGRLIDFLECGKTNLRRTTYLVLDE 184 (242)
T ss_dssp -----CCSEEEECHHHHHHHHHHTSCCCTTCCEEEETT
T ss_pred -----CCCEEEECHHHHHHHHHcCCCCcccccEEEEeC
Confidence 2457776543321 234566677666533
No 399
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=33.00 E-value=27 Score=30.92 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=17.6
Q ss_pred CCceEEeCCCCchHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~ 125 (635)
..-.+|...+|+|||.++-.+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34578899999999977766553
No 400
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=32.95 E-value=21 Score=35.59 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=15.3
Q ss_pred CCceEEeC-CCCchHHHHHHH
Q 006698 103 GNGCIISH-APGTGKTGLTLV 122 (635)
Q Consensus 103 ~~g~iLad-~~GlGKT~~ai~ 122 (635)
.++||+|. .+|+|||.++..
T Consensus 134 ~N~tifAYGQTGSGKTyTM~G 154 (387)
T 2heh_A 134 GKATCFAYGQTGSGKTHTMGG 154 (387)
T ss_dssp CEEEEEEESCTTSSHHHHHC-
T ss_pred CceEEEEecCCCCCCCeEecc
Confidence 56777765 799999999765
No 401
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=32.81 E-value=30 Score=30.04 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=18.1
Q ss_pred CceEEeCCCCchHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
.-.+|...+|+|||.++-.+...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999887666543
No 402
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=32.78 E-value=1.1e+02 Score=24.90 Aligned_cols=24 Identities=13% Similarity=0.085 Sum_probs=15.7
Q ss_pred CCeEEEEcCChhHHHHHHHHHHhh
Q 006698 436 NEKVLVFSQYIEPLTLIMEQLRHR 459 (635)
Q Consensus 436 ~~kviIFs~~~~~~~~l~~~L~~~ 459 (635)
..+|+|..........+...|...
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~ 37 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPL 37 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTS
T ss_pred CceEEEECCCHHHHHHHHHHhccc
Confidence 346677766666666666666654
No 403
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=32.70 E-value=37 Score=29.35 Aligned_cols=26 Identities=19% Similarity=0.115 Sum_probs=19.2
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHHh
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMKL 130 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~~ 130 (635)
-..++...|+|||..+..++..+...
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 45677789999998877777665443
No 404
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=32.59 E-value=82 Score=23.55 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=38.4
Q ss_pred eEEEEcCCh-hHH------HHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEc
Q 006698 438 KVLVFSQYI-EPL------TLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLAS 500 (635)
Q Consensus 438 kviIFs~~~-~~~------~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~s 500 (635)
+|+||+... ... ....++|... |+.+..++=....+.|+.+.+....+...+.++.+.
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~-----~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi~ 67 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGK-----RIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNG 67 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHT-----TCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEET
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEEC
Confidence 688887642 334 5778888887 999999988877777777776664211234444443
No 405
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=32.28 E-value=43 Score=31.79 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=20.9
Q ss_pred CCCCchHHHHHHHHHHHHHHhCCCCCcEEE
Q 006698 110 HAPGTGKTGLTLVFLQAYMKLHPRCRPVII 139 (635)
Q Consensus 110 d~~GlGKT~~ai~~i~~~~~~~~~~~~LIv 139 (635)
.--|.|||.+|+.++..+.+. ..++|+|
T Consensus 44 ~KGGvGKTT~a~nLA~~la~~--G~rVlli 71 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLTDKL--NLKVLMI 71 (298)
T ss_dssp SSSSSSHHHHHHHHHHHHHHT--TCCEEEE
T ss_pred CCCCchHHHHHHHHHHHHHhC--CCeEEEE
Confidence 477999999999988776653 3467664
No 406
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=32.21 E-value=1.9e+02 Score=25.89 Aligned_cols=94 Identities=20% Similarity=0.169 Sum_probs=55.1
Q ss_pred CccccchHHHHH-HHHHh--------cCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHh
Q 006698 417 DPEAGIKTRFLL-ILLEL--------STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVL 487 (635)
Q Consensus 417 ~~~~s~K~~~l~-~~l~~--------~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F 487 (635)
.+..++|..... -++.. ..+.++||.+..+..+.-+.+.+..... ..++.+..+.|+.+....... +
T Consensus 69 a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~---~ 144 (236)
T 2pl3_A 69 AKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGK-NHDFSAGLIIGGKDLKHEAER---I 144 (236)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT-TSSCCEEEECCC--CHHHHHH---H
T ss_pred eCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhC-CCCeeEEEEECCCCHHHHHHh---C
Confidence 345677876422 12221 2567899999998888877777776532 226788889998765443332 2
Q ss_pred cCCCCCcEEEEEccCCcc------cccccccCCeEEE
Q 006698 488 NDPSSQARIMLASTKACC------EGINLVGASRVVL 518 (635)
Q Consensus 488 ~~~~~~~~vll~st~~~~------~GlnL~~a~~vi~ 518 (635)
+ +..|++++..... ..+++...+.||+
T Consensus 145 ~----~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 145 N----NINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp T----TCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred C----CCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 2 2557776654431 1345556666665
No 407
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=32.03 E-value=43 Score=33.45 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=31.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhcC
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGI 157 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~~ 157 (635)
++.++|..+.|+|||..+-.++......++. -.+|+ .++.+=.+|...+..
T Consensus 175 GQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~d-v~~V~---~lIGER~~EV~d~~~ 225 (427)
T 3l0o_A 175 GQRGMIVAPPKAGKTTILKEIANGIAENHPD-TIRII---LLIDERPEEVTDIRE 225 (427)
T ss_dssp TCEEEEEECTTCCHHHHHHHHHHHHHHHCTT-SEEEE---EECSCCHHHHSSSSS
T ss_pred CceEEEecCCCCChhHHHHHHHHHHhhcCCC-eEEEE---EEeccCcchHHHHHH
Confidence 5566777777999998886666555444432 12343 355555666665543
No 408
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=31.83 E-value=67 Score=24.86 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=29.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCce-EEEEeCCCC
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQE-VLYMDGKQD 476 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~-~~~i~G~~~ 476 (635)
+++++||||+.-.........|... |+. +..+.|+..
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~-----G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQ-----GYDVVYSIDGGFE 94 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHH-----TCSSEEEETTHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHc-----CCceEEEecCCHH
Confidence 6788999999877777788888887 874 778999863
No 409
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=31.70 E-value=35 Score=33.27 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=29.4
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe--CccchHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA--PRSMLLTWE 149 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~--P~~l~~qW~ 149 (635)
=.+...--|.|||.+|++++..+.+. .+++|+|- |..-+..|.
T Consensus 18 i~~~sgkGGvGKTt~a~~lA~~la~~--g~~vllid~D~~~~l~~~l 62 (334)
T 3iqw_A 18 WIFVGGKGGVGKTTTSCSLAIQLAKV--RRSVLLLSTDPAHNLSDAF 62 (334)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTS--SSCEEEEECCSSCHHHHHH
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhC--CCcEEEEECCCCCChhHHh
Confidence 45667788999999999988776543 44676665 344444443
No 410
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=31.67 E-value=1.1e+02 Score=24.09 Aligned_cols=63 Identities=13% Similarity=0.220 Sum_probs=34.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCC-ccccccc
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKA-CCEGINL 510 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~-~~~GlnL 510 (635)
.+.+++|..........+...|... |+.+.... +. .+.++.... ....++|+.... +..|+++
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~-----g~~v~~~~---~~---~~a~~~l~~--~~~dlvi~d~~l~~~~g~~~ 69 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSL-----GATTVLAA---DG---VDALELLGG--FTPDLMICDIAMPRMNGLKL 69 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHT-----TCEEEEES---CH---HHHHHHHTT--CCCSEEEECCC-----CHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhC-----CceEEEeC---CH---HHHHHHHhc--CCCCEEEEecCCCCCCHHHH
Confidence 4567888888888888888888775 66554322 11 234444444 224556655443 3345554
No 411
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=31.62 E-value=35 Score=31.81 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=18.8
Q ss_pred ceEEeCCCCchHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
-.+|...+|+|||.++-.+...+
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999998887776544
No 412
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=31.56 E-value=1.9e+02 Score=22.84 Aligned_cols=73 Identities=12% Similarity=0.004 Sum_probs=34.1
Q ss_pred CceEEEEeCCCCHHHHHHHHHHhcCCC--CCcEEEEEccCCccc-ccccccCCeEEEeCCCCChhhHHhhhhhhhh
Q 006698 465 GQEVLYMDGKQDVKKRQSSINVLNDPS--SQARIMLASTKACCE-GINLVGASRVVLLDVVWNPFVERQAISRAYR 537 (635)
Q Consensus 465 g~~~~~i~G~~~~~~r~~~i~~F~~~~--~~~~vll~st~~~~~-GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R 537 (635)
...++.++-.++...-..++...+... ..+.|++++...... -.....+...-++.-|.++....+++.++.+
T Consensus 46 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 121 (140)
T 3n53_A 46 HPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLR 121 (140)
T ss_dssp CCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHh
Confidence 456677776665444445555554322 345666654433211 1122222222334457778887777777765
No 413
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=31.44 E-value=40 Score=31.15 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=26.0
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA 140 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~ 140 (635)
..-+++..-.|+|||..+..++..+. ...++++|.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~---~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE---DNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT---TTSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH---CCCeEEEEe
Confidence 34578889999999988888876654 344677776
No 414
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=31.32 E-value=1.6e+02 Score=23.13 Aligned_cols=73 Identities=10% Similarity=0.088 Sum_probs=32.8
Q ss_pred ceEEEEeCCCCHHHHHHHHHHhcCC-CCCcEEEEEccCCccc-ccccccCCeEEEeCCCCChhhHHhhhhhhhhc
Q 006698 466 QEVLYMDGKQDVKKRQSSINVLNDP-SSQARIMLASTKACCE-GINLVGASRVVLLDVVWNPFVERQAISRAYRL 538 (635)
Q Consensus 466 ~~~~~i~G~~~~~~r~~~i~~F~~~-~~~~~vll~st~~~~~-GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~ 538 (635)
..++.++-.++...-.+.++..+.. ...+.|++++...... -.....+...-++.-|.++....+++.|+.+-
T Consensus 53 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 53 IGLMITDLRMQPESGLDLIRTIRASERAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKI 127 (136)
T ss_dssp EEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred CcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcC
Confidence 4555555555444444445544432 2345555554332211 11111222222334556666666666666553
No 415
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=31.32 E-value=20 Score=35.86 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=15.4
Q ss_pred CCceEEe-CCCCchHHHHHHH
Q 006698 103 GNGCIIS-HAPGTGKTGLTLV 122 (635)
Q Consensus 103 ~~g~iLa-d~~GlGKT~~ai~ 122 (635)
.++||+| ..+|+|||.++..
T Consensus 98 ~N~tifAYGqTGSGKTyTM~G 118 (388)
T 3bfn_A 98 QNASVLAYGPTGAGKTHTMLG 118 (388)
T ss_dssp CCEEEEEESCTTSSHHHHHTB
T ss_pred ceeeEeeecCCCCCCCeEeec
Confidence 6677776 5699999988753
No 416
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=31.26 E-value=85 Score=25.76 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=19.9
Q ss_pred CCeEEEEcCChhHHHHHHHHHHhhhcccCCceEE
Q 006698 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVL 469 (635)
Q Consensus 436 ~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~ 469 (635)
+.+++|..........+...|... |+.+.
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~-----g~~v~ 31 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELA-----GFTVS 31 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHT-----TCEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHc-----CcEEE
Confidence 356777777777777777777764 66554
No 417
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=31.16 E-value=1e+02 Score=25.23 Aligned_cols=63 Identities=10% Similarity=0.218 Sum_probs=35.8
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCc-cccccc
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKAC-CEGINL 510 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~-~~GlnL 510 (635)
.+.+|+|..........+...|... |+.+..... -.++++.... ..+.++|+..... ..|+.+
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~-----g~~v~~~~~------~~~a~~~l~~--~~~dlvi~d~~l~~~~g~~~ 69 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRL-----GCNIITFTS------PLDALEALKG--TSVQLVISDMRMPEMGGEVF 69 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTT-----TCEEEEESC------HHHHHHHHTT--SCCSEEEEESSCSSSCHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHc-----CCeEEEeCC------HHHHHHHHhc--CCCCEEEEecCCCCCCHHHH
Confidence 3567888888888888888888764 666543322 1234444443 2245566554442 345543
No 418
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=31.08 E-value=2.3e+02 Score=24.49 Aligned_cols=95 Identities=17% Similarity=0.100 Sum_probs=58.5
Q ss_pred CccccchHHH-HHHHHHhc-------CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhc
Q 006698 417 DPEAGIKTRF-LLILLELS-------TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLN 488 (635)
Q Consensus 417 ~~~~s~K~~~-l~~~l~~~-------~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~ 488 (635)
.+..++|... +.-++... .+.++||.+..+..+.-+.+.+...++ +..+..+.|+.+.......+. +
T Consensus 45 ~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~ 119 (207)
T 2gxq_A 45 ARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP---HLKVVAVYGGTGYGKQKEALL--R 119 (207)
T ss_dssp CCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCT---TSCEEEECSSSCSHHHHHHHH--H
T ss_pred CCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhh---cceEEEEECCCChHHHHHHhh--C
Confidence 3456778765 44444432 466899999998888888888877643 467888888877554433332 1
Q ss_pred CCCCCcEEEEEccCCcc-----cccccccCCeEEEeC
Q 006698 489 DPSSQARIMLASTKACC-----EGINLVGASRVVLLD 520 (635)
Q Consensus 489 ~~~~~~~vll~st~~~~-----~GlnL~~a~~vi~~d 520 (635)
+..|++++..... ..+++...+.||+=+
T Consensus 120 ----~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDE 152 (207)
T 2gxq_A 120 ----GADAVVATPGRALDYLRQGVLDLSRVEVAVLDE 152 (207)
T ss_dssp ----CCSEEEECHHHHHHHHHHTSSCCTTCSEEEEES
T ss_pred ----CCCEEEECHHHHHHHHHcCCcchhhceEEEEEC
Confidence 2456776543321 234556666666533
No 419
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=31.06 E-value=33 Score=29.07 Aligned_cols=22 Identities=9% Similarity=0.089 Sum_probs=16.6
Q ss_pred eEEeCCCCchHHHHHHHHHHHH
Q 006698 106 CIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~ 127 (635)
.+|...+|+|||.++-.+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788889999998776665433
No 420
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=31.06 E-value=1.2e+02 Score=23.40 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=12.6
Q ss_pred eEEEEcCChhHHHHHHHHHHhh
Q 006698 438 KVLVFSQYIEPLTLIMEQLRHR 459 (635)
Q Consensus 438 kviIFs~~~~~~~~l~~~L~~~ 459 (635)
+++|..........+...|...
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~~ 28 (127)
T 2gkg_A 7 KILIVESDTALSATLRSALEGR 28 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHhc
Confidence 5555555555555555555553
No 421
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=31.05 E-value=29 Score=30.41 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=18.9
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
+.-.+|...+|+|||.++-.+...+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467889999999998876665433
No 422
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=30.98 E-value=33 Score=33.90 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=20.7
Q ss_pred CCCCchHHHHHHHHHHHHHHhCCCCCcEEE
Q 006698 110 HAPGTGKTGLTLVFLQAYMKLHPRCRPVII 139 (635)
Q Consensus 110 d~~GlGKT~~ai~~i~~~~~~~~~~~~LIv 139 (635)
.--|.|||.+|+.++..+.+ ...++|+|
T Consensus 9 ~KGGvGKTT~a~nLA~~LA~--~G~rVLlI 36 (361)
T 3pg5_A 9 NKGGVGKTTLSTNVAHYFAL--QGKRVLYV 36 (361)
T ss_dssp SSCCHHHHHHHHHHHHHHHH--TTCCEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHh--CCCcEEEE
Confidence 34499999999998877755 34577766
No 423
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=30.85 E-value=68 Score=35.33 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=19.6
Q ss_pred ceEEeCCCCchHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
..+|..++|+|||..|-++...+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 58999999999999888777554
No 424
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=30.80 E-value=28 Score=34.91 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=19.1
Q ss_pred ceEEeCCCCchHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
-.+|+.++|+|||-.+..++..+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHC
Confidence 45789999999999988887554
No 425
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=30.62 E-value=39 Score=28.94 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=17.0
Q ss_pred CCceEEeCCCCchHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFL 124 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i 124 (635)
+.-.+|...+|+|||..+=.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 3457899999999997765554
No 426
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=30.61 E-value=27 Score=34.02 Aligned_cols=20 Identities=35% Similarity=0.316 Sum_probs=15.1
Q ss_pred CCceEEe-CCCCchHHHHHHH
Q 006698 103 GNGCIIS-HAPGTGKTGLTLV 122 (635)
Q Consensus 103 ~~g~iLa-d~~GlGKT~~ai~ 122 (635)
.++||+| ..+|+|||.++..
T Consensus 80 ~n~tifAYGqTGSGKTyTm~G 100 (330)
T 2h58_A 80 FNVCIFAYGQTGAGKTYTMEG 100 (330)
T ss_dssp CCEEEEEESSTTSSHHHHHTB
T ss_pred CEEEEEeECCCCCCCcEEEec
Confidence 5677765 5689999988753
No 427
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=30.35 E-value=54 Score=34.06 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=27.7
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCc-EEEe-Ccc
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRP-VIIA-PRS 143 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~-LIv~-P~~ 143 (635)
...++++..+|+|||...-+++..++.......+ ++++ |+.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 5688999999999998777777666544332333 4444 454
No 428
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=30.31 E-value=90 Score=24.88 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=9.4
Q ss_pred CCCChhhHHhhhhhhhh
Q 006698 521 VVWNPFVERQAISRAYR 537 (635)
Q Consensus 521 ~~wnp~~~~Qa~gR~~R 537 (635)
-|.++....+++.++.+
T Consensus 109 kp~~~~~l~~~l~~~~~ 125 (140)
T 2qr3_A 109 KPWDNQKLLETLLNAAS 125 (140)
T ss_dssp ESCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 35555555555555554
No 429
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=30.30 E-value=53 Score=32.82 Aligned_cols=51 Identities=24% Similarity=0.276 Sum_probs=31.3
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhc
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWG 156 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~ 156 (635)
+++.+.|..+.|+|||..+-.++....+.++. -.+|++ ++.+=.+|...+.
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~-v~~I~~---lIGER~~Ev~~~~ 223 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPD-CVLMVL---LIDERPEEVTEMQ 223 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTT-SEEEEE---EESSCHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcCCC-eeEEEE---EecCChHHHHHHH
Confidence 36677888888999998876665544444433 224443 4445455665553
No 430
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=30.29 E-value=1.7e+02 Score=28.18 Aligned_cols=27 Identities=4% Similarity=-0.231 Sum_probs=20.7
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYMK 129 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~~ 129 (635)
..-.++..+-|.||+-.+-.++..+..
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~ 44 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAA 44 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHh
Confidence 446788899999999888777766553
No 431
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=30.23 E-value=1.2e+02 Score=31.15 Aligned_cols=95 Identities=7% Similarity=0.059 Sum_probs=59.1
Q ss_pred CccccchHHHHHHHHHhc---CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCC
Q 006698 417 DPEAGIKTRFLLILLELS---TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQ 493 (635)
Q Consensus 417 ~~~~s~K~~~l~~~l~~~---~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~ 493 (635)
.+..++|.......+... .+.++||.+..+..+.-..+.+... +..++..+..+.|+.+..++ .. +.
T Consensus 135 ~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~-~~~~~~~v~~~~~~~~~~~~-------~~--~~ 204 (510)
T 2oca_A 135 LPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY-RLFSHAMIKKIGGGASKDDK-------YK--ND 204 (510)
T ss_dssp CCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHT-TSSCGGGEEECGGGCCTTGG-------GC--TT
T ss_pred eCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHh-hcCCccceEEEecCCccccc-------cc--cC
Confidence 345677877655544432 4449999999988888777887554 22235678888888775543 12 34
Q ss_pred cEEEEEccCCcccc--cccccCCeEEEeCC
Q 006698 494 ARIMLASTKACCEG--INLVGASRVVLLDV 521 (635)
Q Consensus 494 ~~vll~st~~~~~G--lnL~~a~~vi~~d~ 521 (635)
..|++++....... ..+...+.||+=+.
T Consensus 205 ~~I~i~T~~~l~~~~~~~~~~~~liIiDE~ 234 (510)
T 2oca_A 205 APVVVGTWQTVVKQPKEWFSQFGMMMNDEC 234 (510)
T ss_dssp CSEEEEEHHHHTTSCGGGGGGEEEEEEETG
T ss_pred CcEEEEeHHHHhhchhhhhhcCCEEEEECC
Confidence 66788766654433 33445555655333
No 432
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=30.23 E-value=1.1e+02 Score=24.74 Aligned_cols=23 Identities=9% Similarity=0.250 Sum_probs=12.3
Q ss_pred CeEEEEcCChhHHHHHHHHHHhh
Q 006698 437 EKVLVFSQYIEPLTLIMEQLRHR 459 (635)
Q Consensus 437 ~kviIFs~~~~~~~~l~~~L~~~ 459 (635)
.+|+|..........+...|...
T Consensus 9 ~~iLivd~~~~~~~~l~~~L~~~ 31 (147)
T 2zay_A 9 WRIMLVDTQLPALAASISALSQE 31 (147)
T ss_dssp EEEEEECTTGGGGHHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHc
Confidence 34555555555555555555543
No 433
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=30.17 E-value=1.1e+02 Score=31.72 Aligned_cols=95 Identities=14% Similarity=0.230 Sum_probs=53.7
Q ss_pred CccccchHHHHHHHH----HhcC---CCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcC
Q 006698 417 DPEAGIKTRFLLILL----ELST---NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLND 489 (635)
Q Consensus 417 ~~~~s~K~~~l~~~l----~~~~---~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~ 489 (635)
.+..++|.....-.+ ...+ +.++||.+.....+.-+.+.+...+... ++.+..++|+.+...+...+. .
T Consensus 29 ~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~--~- 104 (556)
T 4a2p_A 29 APTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ-GYSVQGISGENFSNVSVEKVI--E- 104 (556)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEECCCC-----CHHHHH--H-
T ss_pred cCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEeCCCCcchhHHHhh--C-
Confidence 345677775533322 2222 7899999999887777776666654322 889999999986554432221 1
Q ss_pred CCCCcEEEEEccCCccc----c-c-ccccCCeEEE
Q 006698 490 PSSQARIMLASTKACCE----G-I-NLVGASRVVL 518 (635)
Q Consensus 490 ~~~~~~vll~st~~~~~----G-l-nL~~a~~vi~ 518 (635)
+..|+++++..... | + ++...+.||+
T Consensus 105 ---~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 136 (556)
T 4a2p_A 105 ---DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 136 (556)
T ss_dssp ---HCSEEEECHHHHHHHHHSSSCCCSTTCSEEEE
T ss_pred ---CCCEEEECHHHHHHHHHhCcccccccCCEEEE
Confidence 14467765554332 1 2 4556666666
No 434
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=30.13 E-value=2e+02 Score=22.53 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=10.6
Q ss_pred CCCCChhhHHhhhhhhhh
Q 006698 520 DVVWNPFVERQAISRAYR 537 (635)
Q Consensus 520 d~~wnp~~~~Qa~gR~~R 537 (635)
.-|.++....+++.++.+
T Consensus 103 ~KP~~~~~l~~~i~~~~~ 120 (136)
T 1mvo_A 103 TKPFSPREVNARVKAILR 120 (136)
T ss_dssp ESSCCHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHHHH
Confidence 345666666666666554
No 435
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=30.05 E-value=31 Score=33.42 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=18.2
Q ss_pred CceEEeCCCCchHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~ 125 (635)
+.++|..+.|+|||..+-.++.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHH
Confidence 5789999999999987766653
No 436
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=29.92 E-value=31 Score=30.93 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=17.1
Q ss_pred eEEeCCCCchHHHHHHHHHHHH
Q 006698 106 CIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~ 127 (635)
.+|...+|+|||.++-.+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788889999998877766443
No 437
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=29.82 E-value=1e+02 Score=23.93 Aligned_cols=18 Identities=11% Similarity=0.023 Sum_probs=11.4
Q ss_pred CCCCChhhHHhhhhhhhh
Q 006698 520 DVVWNPFVERQAISRAYR 537 (635)
Q Consensus 520 d~~wnp~~~~Qa~gR~~R 537 (635)
.-|+++....+++.++.+
T Consensus 103 ~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 103 AKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp ESSCCHHHHHHHHHHHSC
T ss_pred cCCCCHHHHHHHHHHHhc
Confidence 446677777666666654
No 438
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=29.78 E-value=1.4e+02 Score=23.95 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=15.4
Q ss_pred CCeEEEEcCChhHHHHHHHHHHhh
Q 006698 436 NEKVLVFSQYIEPLTLIMEQLRHR 459 (635)
Q Consensus 436 ~~kviIFs~~~~~~~~l~~~L~~~ 459 (635)
+.+++|..........+...|...
T Consensus 6 ~~~iLivdd~~~~~~~l~~~L~~~ 29 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQRE 29 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHT
T ss_pred CccEEEEECCHHHHHHHHHHHHHc
Confidence 346666666666666666666654
No 439
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=29.75 E-value=1e+02 Score=24.35 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=16.6
Q ss_pred CCeEEEEcCChhHHHHHHHHHHhh
Q 006698 436 NEKVLVFSQYIEPLTLIMEQLRHR 459 (635)
Q Consensus 436 ~~kviIFs~~~~~~~~l~~~L~~~ 459 (635)
+.+++|..........+...|...
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~ 25 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANS 25 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhc
Confidence 456777777777777777777664
No 440
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=29.75 E-value=61 Score=31.26 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=24.9
Q ss_pred CCEEEEeCCCcCCC----cccHHHHHHHhc---ccCcEEEEeccc
Q 006698 233 PGLFVFDEGHTPRN----DDTCMFKALSRI---KTRRRIILSGTP 270 (635)
Q Consensus 233 ~~~vIvDEaH~~kn----~~s~~~~~l~~l---~~~~~l~LTgTP 270 (635)
.-+||+||+|.+.. ........+..+ .....+++||++
T Consensus 129 ~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~ 173 (350)
T 2qen_A 129 EFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSE 173 (350)
T ss_dssp CEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred CEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCc
Confidence 56899999999864 222344445444 235678889876
No 441
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=29.70 E-value=27 Score=31.29 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=16.0
Q ss_pred eEEeCCCCchHHHHHHHHHH
Q 006698 106 CIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~ 125 (635)
.+|...+|+|||.++-.+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57889999999987766653
No 442
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=29.67 E-value=2.1e+02 Score=22.58 Aligned_cols=71 Identities=11% Similarity=0.019 Sum_probs=39.8
Q ss_pred CceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCeEEEeCCCCChhhHHhhhhhhhh
Q 006698 465 GQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASRVVLLDVVWNPFVERQAISRAYR 537 (635)
Q Consensus 465 g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R 537 (635)
...++.++-.++...-.+++...+.....+.|+++++....... .... ..-++.-|.++....+++.++.+
T Consensus 60 ~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~-~~~~-~~~~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 60 TCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRHELIE-SSEH-NLSYLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp SCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC--CCC-CSSS-CEEEEESSCCHHHHHHHHHHTCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCCCHHH-HHHH-HHheeeCCCCHHHHHHHHHHHHH
Confidence 45667777666544445566666653345677776512222222 2222 33344567788888888887754
No 443
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=29.64 E-value=32 Score=30.96 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=18.3
Q ss_pred ceEEeCCCCchHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
..+|...+|+|||.++-.+...+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57888999999998877766544
No 444
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=29.62 E-value=35 Score=30.26 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=18.9
Q ss_pred CceEEeCCCCchHHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
.-.+|...+|+|||.++=.+...+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356889999999998877776544
No 445
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=29.60 E-value=19 Score=40.12 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=21.6
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHH
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
.+.+++|..++|+|||..|-+++..+
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999888777554
No 446
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=29.38 E-value=35 Score=29.69 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=16.7
Q ss_pred eEEeCCCCchHHHHHHHHHHHH
Q 006698 106 CIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~ 127 (635)
.+|...+|+|||.++=.+...+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4677889999998877666544
No 447
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=29.30 E-value=1.9e+02 Score=22.51 Aligned_cols=74 Identities=12% Similarity=-0.055 Sum_probs=34.2
Q ss_pred CceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccc-cccccCCeEEEeCCCCChhhHHhhhhhhhhc
Q 006698 465 GQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEG-INLVGASRVVLLDVVWNPFVERQAISRAYRL 538 (635)
Q Consensus 465 g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~G-lnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~ 538 (635)
....+.++-.++...-.+.+...+.......|++++...-..- .....+...-++.-|.++....+++.++.+-
T Consensus 46 ~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 46 KPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp CCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTT
T ss_pred CCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 4456666655544344444444443233455666544332211 1111122222333456777777777776653
No 448
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=29.17 E-value=1.8e+02 Score=22.39 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=11.2
Q ss_pred eEEEEcCChhHHHHHHHHHHhh
Q 006698 438 KVLVFSQYIEPLTLIMEQLRHR 459 (635)
Q Consensus 438 kviIFs~~~~~~~~l~~~L~~~ 459 (635)
+++|..........+...|...
T Consensus 4 ~ILivdd~~~~~~~l~~~l~~~ 25 (122)
T 3gl9_A 4 KVLLVDDSAVLRKIVSFNLKKE 25 (122)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT
T ss_pred eEEEEeCCHHHHHHHHHHHHHC
Confidence 4555555555555555555443
No 449
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=29.13 E-value=37 Score=32.34 Aligned_cols=38 Identities=16% Similarity=0.086 Sum_probs=23.1
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
.-+.|+.+.|+|||..+-.+...+...++..++.++++
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~ 69 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYAS 69 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEec
Confidence 34578899999999777655544433322234455534
No 450
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=28.87 E-value=48 Score=32.86 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=24.8
Q ss_pred eEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEe
Q 006698 106 CIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIA 140 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~ 140 (635)
++.+.--|.|||.+|+.++..+.+. ..++|+|=
T Consensus 147 av~s~KGGvGKTT~a~nLA~~La~~--g~rVlliD 179 (373)
T 3fkq_A 147 IFTSPCGGVGTSTVAAACAIAHANM--GKKVFYLN 179 (373)
T ss_dssp EEECSSTTSSHHHHHHHHHHHHHHH--TCCEEEEE
T ss_pred EEECCCCCChHHHHHHHHHHHHHhC--CCCEEEEE
Confidence 4555678999999999998877665 34677764
No 451
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=28.79 E-value=26 Score=32.52 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=18.2
Q ss_pred CCceEEeCCCCchHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~ 125 (635)
+...+|...+|+|||..+-.+..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999977766653
No 452
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=28.64 E-value=8.1 Score=28.83 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=23.3
Q ss_pred ccCCCCCCCCcchhhhhhcCCCC--CccccccC
Q 006698 6 DIDPPFATSPSRRAEWREYNNVD--PSFLDDLN 36 (635)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 36 (635)
.|+++|...|.+.++|+-.+++. ...++++.
T Consensus 41 ~YlVKWkGy~~~~~TWEp~~nl~~~~~li~~f~ 73 (81)
T 4hae_A 41 EYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFN 73 (81)
T ss_dssp EEEEEETTCCGGGCEEEEGGGEEECCCCCCTTC
T ss_pred EEEEEECCCCCCCCeEEeHHHhhhhHHHHHHHH
Confidence 58999999999999999887542 34445544
No 453
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=28.57 E-value=34 Score=30.37 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=17.9
Q ss_pred CCceEEeCCCCchHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~ 125 (635)
+.-.+|+.++|+|||-++=.++.
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 55678999999999976655543
No 454
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=28.56 E-value=1.8e+02 Score=23.10 Aligned_cols=75 Identities=5% Similarity=0.019 Sum_probs=36.5
Q ss_pred CceEEEEeCCCC-HHHHHHHHHHhcC--CCCCcEEEEEccCCcccc-cccccCCeEEEeCCCCChhhHHhhhhhhhhcC
Q 006698 465 GQEVLYMDGKQD-VKKRQSSINVLND--PSSQARIMLASTKACCEG-INLVGASRVVLLDVVWNPFVERQAISRAYRLG 539 (635)
Q Consensus 465 g~~~~~i~G~~~-~~~r~~~i~~F~~--~~~~~~vll~st~~~~~G-lnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~G 539 (635)
...++.++-.++ ...-.++++..+. ....+.|++++...-..- .....+...-++.-|.++....+++.++.+-+
T Consensus 50 ~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 50 SITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp CCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred CCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 455666666666 5544455554443 223455666543322111 11112222223445667777777777776543
No 455
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=28.28 E-value=37 Score=28.95 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=16.4
Q ss_pred CceEEeCCCCchHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFL 124 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i 124 (635)
...+|...+|+|||..+=.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La 25 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLA 25 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467899999999997655544
No 456
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=28.10 E-value=54 Score=26.54 Aligned_cols=37 Identities=19% Similarity=0.104 Sum_probs=29.4
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCce-EEEEeCCCC
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQE-VLYMDGKQD 476 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~-~~~i~G~~~ 476 (635)
++.++||||..-.........|... |+. +..++|++.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~-----G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHA-----GFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHH-----HCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHc-----CCCCeEEeCCcHH
Confidence 6788999999866677777888876 774 788999863
No 457
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=28.03 E-value=30 Score=33.43 Aligned_cols=24 Identities=17% Similarity=0.037 Sum_probs=20.3
Q ss_pred CCceEEeCCCCchHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
+.-.+|+.++|+|||..++.++..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 445799999999999999888764
No 458
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=27.94 E-value=44 Score=31.01 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=18.8
Q ss_pred CCceEEeCCCCchHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQA 126 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~ 126 (635)
+...+|...+|+|||..+=.+...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999776666543
No 459
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=27.93 E-value=39 Score=31.07 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=19.6
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
+...+|...+|+|||.++-.+...+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4468999999999998877766443
No 460
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=27.89 E-value=29 Score=31.46 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=18.0
Q ss_pred CCceEEeCCCCchHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~ 125 (635)
....+|...+|+|||.++-.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999987766653
No 461
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=27.82 E-value=32 Score=37.70 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=15.2
Q ss_pred CCceEEe-CCCCchHHHHH
Q 006698 103 GNGCIIS-HAPGTGKTGLT 120 (635)
Q Consensus 103 ~~g~iLa-d~~GlGKT~~a 120 (635)
.++||+| ..+|+|||.++
T Consensus 462 ~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 462 TNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp CCEEEEEESSTTSSHHHHH
T ss_pred ceEEEEccCCCCCchhhcc
Confidence 6688887 67999999886
No 462
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=27.74 E-value=39 Score=29.99 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=19.5
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
+.-.+|...+|+|||.++-.+...+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4457899999999998877766544
No 463
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=27.74 E-value=39 Score=30.54 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=16.9
Q ss_pred eEEeCCCCchHHHHHHHHHHHH
Q 006698 106 CIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~ 127 (635)
.+|...+|+|||.++-.+...+
T Consensus 3 I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788899999998876665443
No 464
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=27.46 E-value=60 Score=26.95 Aligned_cols=36 Identities=11% Similarity=0.065 Sum_probs=29.4
Q ss_pred CCCeEEEEcCCh--hHHHHHHHHHHhhhcccCCceEEEEeCCC
Q 006698 435 TNEKVLVFSQYI--EPLTLIMEQLRHRFNWREGQEVLYMDGKQ 475 (635)
Q Consensus 435 ~~~kviIFs~~~--~~~~~l~~~L~~~~~~~~g~~~~~i~G~~ 475 (635)
++.++||||..- .........|... |+++..++|++
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~-----G~~v~~l~GG~ 108 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQL-----GFRVKELIGGI 108 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHT-----TCEEEEEESHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHC-----CCeEEEeCCcH
Confidence 567899999986 4566777888876 99999999985
No 465
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=27.39 E-value=24 Score=30.55 Aligned_cols=22 Identities=23% Similarity=0.129 Sum_probs=13.4
Q ss_pred CceEEeCCCCchHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~ 125 (635)
.-.+|...+|+|||.++-.+..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999987766553
No 466
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=27.27 E-value=2e+02 Score=21.62 Aligned_cols=57 Identities=5% Similarity=-0.089 Sum_probs=39.2
Q ss_pred CeEEEEcCC-hhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEE
Q 006698 437 EKVLVFSQY-IEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLA 499 (635)
Q Consensus 437 ~kviIFs~~-~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~ 499 (635)
.+|.||+.. -.......++|.+. |++|..++=...++.++.+.+.- .+...+.++++
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~~-----gi~y~~idi~~d~~~~~~~~~~~-~G~~tVP~I~i 61 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTAN-----RIAYDEVDIEHNRAAAEFVGSVN-GGNRTVPTVKF 61 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHHT-----TCCCEEEETTTCHHHHHHHHHHS-SSSSCSCEEEE
T ss_pred CcEEEEcCCCCHhHHHHHHHHHhc-----CCceEEEEcCCCHHHHHHHHHHc-CCCCEeCEEEE
Confidence 468899764 34577788899887 99999999887777776655543 22233555554
No 467
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=27.24 E-value=32 Score=29.92 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=16.3
Q ss_pred CCceEEeCCCCchHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFL 124 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i 124 (635)
+.-.+|..++|+|||..+=.++
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La 30 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALA 30 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4457889999999996654443
No 468
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=27.04 E-value=1.4e+02 Score=31.09 Aligned_cols=79 Identities=18% Similarity=0.190 Sum_probs=58.2
Q ss_pred CccccchHHHHH-HHHHhcCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcE
Q 006698 417 DPEAGIKTRFLL-ILLELSTNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQAR 495 (635)
Q Consensus 417 ~~~~s~K~~~l~-~~l~~~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~ 495 (635)
.+..++|..+.. -.+. .+.++||.+..+..+.-..+.|... |+.+..++|+.+..++......... +...
T Consensus 47 apTGsGKTl~~~lp~l~--~~g~~lvi~P~~aL~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~--~~~~ 117 (523)
T 1oyw_A 47 MPTGGGKSLCYQIPALL--LNGLTVVVSPLISLMKDQVDQLQAN-----GVAAACLNSTQTREQQLEVMTGCRT--GQIR 117 (523)
T ss_dssp CSCHHHHHHHHHHHHHH--SSSEEEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHH--TCCS
T ss_pred CCCCcHHHHHHHHHHHH--hCCCEEEECChHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhc--CCCC
Confidence 455677875322 2222 3568999999998888888888876 9999999999998888888887776 4567
Q ss_pred EEEEccCCc
Q 006698 496 IMLASTKAC 504 (635)
Q Consensus 496 vll~st~~~ 504 (635)
++++++...
T Consensus 118 ilv~Tpe~l 126 (523)
T 1oyw_A 118 LLYIAPERL 126 (523)
T ss_dssp EEEECHHHH
T ss_pred EEEECHHHH
Confidence 888766543
No 469
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=26.82 E-value=1.2e+02 Score=24.70 Aligned_cols=18 Identities=22% Similarity=0.089 Sum_probs=8.9
Q ss_pred CCCCChhhHHhhhhhhhh
Q 006698 520 DVVWNPFVERQAISRAYR 537 (635)
Q Consensus 520 d~~wnp~~~~Qa~gR~~R 537 (635)
.-|.++....+++.++.+
T Consensus 106 ~kp~~~~~L~~~l~~~~~ 123 (154)
T 2qsj_A 106 PKSADPQVLIHAVSLILE 123 (154)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred eCCCCHHHHHHHHHHHHc
Confidence 344455555555555444
No 470
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=26.78 E-value=1.6e+02 Score=27.92 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=60.6
Q ss_pred CccccchHHH-HHHHHHhc----CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCC
Q 006698 417 DPEAGIKTRF-LLILLELS----TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPS 491 (635)
Q Consensus 417 ~~~~s~K~~~-l~~~l~~~----~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~ 491 (635)
.+..++|..+ ++-++... .+.++||.+..+..+.-+.+.+........++.+..+.|+.+...+. .
T Consensus 138 a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---------~ 208 (300)
T 3fmo_B 138 SQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---------K 208 (300)
T ss_dssp CCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---------C
T ss_pred CCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---------c
Confidence 3456788755 44555544 34479999999988888777777654333477888888876543221 1
Q ss_pred CCcEEEEEccCCc-----c-cccccccCCeEEEeC
Q 006698 492 SQARIMLASTKAC-----C-EGINLVGASRVVLLD 520 (635)
Q Consensus 492 ~~~~vll~st~~~-----~-~GlnL~~a~~vi~~d 520 (635)
....|+|+++... . ..+++.....+|+=+
T Consensus 209 ~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDE 243 (300)
T 3fmo_B 209 ISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 243 (300)
T ss_dssp CCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETT
T ss_pred CCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeC
Confidence 3356777665443 1 246777888777643
No 471
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=26.73 E-value=47 Score=28.93 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=16.8
Q ss_pred eEEeCCCCchHHHHHHHHHHHH
Q 006698 106 CIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~ 127 (635)
.+|...+|+|||.++-.+...+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3677889999998877766544
No 472
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=26.62 E-value=42 Score=33.60 Aligned_cols=34 Identities=24% Similarity=0.165 Sum_probs=23.1
Q ss_pred eEEeCCCCchHHHHHHHHHHHHHHh----CCCCCcEEE
Q 006698 106 CIISHAPGTGKTGLTLVFLQAYMKL----HPRCRPVII 139 (635)
Q Consensus 106 ~iLad~~GlGKT~~ai~~i~~~~~~----~~~~~~LIv 139 (635)
++...--|.|||.+|+.++..+... ....++|+|
T Consensus 112 av~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlli 149 (398)
T 3ez2_A 112 FISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI 149 (398)
T ss_dssp EECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 3445677999999999988776532 124466555
No 473
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=26.54 E-value=47 Score=29.30 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=17.4
Q ss_pred CCceEEeCCCCchHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~ 125 (635)
+.-.+|..++|+|||..+=.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 44678899999999976655543
No 474
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=26.53 E-value=2.5e+02 Score=27.28 Aligned_cols=96 Identities=13% Similarity=0.033 Sum_probs=58.1
Q ss_pred CccccchHHH-HHHHHHhc----CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCC
Q 006698 417 DPEAGIKTRF-LLILLELS----TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPS 491 (635)
Q Consensus 417 ~~~~s~K~~~-l~~~l~~~----~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~ 491 (635)
.+..++|... +.-++... .+.++||.+.....+..+.+.+...... .++.+..+.|+.+..+....+. .
T Consensus 65 ~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~---~-- 138 (394)
T 1fuu_A 65 AQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFH-MDIKVHACIGGTSFVEDAEGLR---D-- 138 (394)
T ss_dssp CCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTT-SCCCEEEECSSCCHHHHHHHHH---H--
T ss_pred CCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhcc-CCeeEEEEeCCCchHHHHhhcC---C--
Confidence 3556788765 33344332 5679999999988888777777654322 2788999999987665544333 1
Q ss_pred CCcEEEEEccCCcc-----cccccccCCeEEEeC
Q 006698 492 SQARIMLASTKACC-----EGINLVGASRVVLLD 520 (635)
Q Consensus 492 ~~~~vll~st~~~~-----~GlnL~~a~~vi~~d 520 (635)
..|++++....- ..+++...+.||+=+
T Consensus 139 --~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDE 170 (394)
T 1fuu_A 139 --AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 170 (394)
T ss_dssp --CSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred --CCEEEECHHHHHHHHHhCCcchhhCcEEEEEC
Confidence 346665543321 123344556665533
No 475
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=26.50 E-value=44 Score=29.50 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=18.5
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
+.-..|..++|+|||..+-++...+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456788999999997776665444
No 476
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=26.36 E-value=42 Score=29.52 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=17.7
Q ss_pred CCceEEeCCCCchHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~ 125 (635)
+.-.+|...+|+|||.++=.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 34578999999999977766553
No 477
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=26.35 E-value=44 Score=29.65 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=19.5
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
+.-.+|...+|+|||.++=.+...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3457899999999998877766544
No 478
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=26.31 E-value=41 Score=35.39 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=20.5
Q ss_pred CCCceEEeCCCCchHHHHHHHHHHHH
Q 006698 102 GGNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 102 ~~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
.+...+|..++|+|||..+-++...+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 35578999999999998877766444
No 479
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=26.02 E-value=70 Score=40.68 Aligned_cols=61 Identities=13% Similarity=0.060 Sum_probs=37.6
Q ss_pred cccHHHHHHHHHHHHhhhCCcccccccccCCCCCCCceEEeCCCCchHHHHHHHHHHHHHHh-CCCCCcEEEeCccc
Q 006698 69 KMFPHQREGFEFIWKNIAGGIDLDELKNSTSTGGGNGCIISHAPGTGKTGLTLVFLQAYMKL-HPRCRPVIIAPRSM 144 (635)
Q Consensus 69 ~L~p~Q~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~g~iLad~~GlGKT~~ai~~i~~~~~~-~~~~~~LIv~P~~l 144 (635)
..-|++..-+-.+++.... ..|++|..++|+|||...=+++.++-.. +.....-++-|+++
T Consensus 904 ~~~~~~~~K~~ql~e~~~~---------------r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~ 965 (2695)
T 4akg_A 904 SMSEEFLKKCMQFYYMQKT---------------QQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVL 965 (2695)
T ss_dssp CCCHHHHHHHHHHHHHHHH---------------CSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTS
T ss_pred cccHHHHHHHHHHHHHHHh---------------cceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence 4456666655566555432 5799999999999996655554444332 22223356777665
No 480
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=26.01 E-value=1.7e+02 Score=22.80 Aligned_cols=75 Identities=8% Similarity=0.027 Sum_probs=38.3
Q ss_pred CceEEEEeCCCCHHHHHHHHHHhcCC-CCCcEEEEEccCCcccc-cccccCCeEEEeCCCCChhhHHhhhhhhhhcC
Q 006698 465 GQEVLYMDGKQDVKKRQSSINVLNDP-SSQARIMLASTKACCEG-INLVGASRVVLLDVVWNPFVERQAISRAYRLG 539 (635)
Q Consensus 465 g~~~~~i~G~~~~~~r~~~i~~F~~~-~~~~~vll~st~~~~~G-lnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~G 539 (635)
...++.++-.++...-.+.++..+.. .....|++++......- .....+...-++.-|+++....+++.++.|..
T Consensus 48 ~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 48 RPDILLLDIIMPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp CCSEEEEESCCSSSCHHHHHHHHHHHCSSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHhcCCCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 45677777665433333334433321 12355666544332211 11222333344556788888888888877643
No 481
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=25.92 E-value=1.7e+02 Score=28.69 Aligned_cols=108 Identities=17% Similarity=0.067 Sum_probs=0.0
Q ss_pred CCCCceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeCccchHHHHHHHHHhcCCCcccccCCCCCcCcccchhhHh
Q 006698 101 GGGNGCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAPRSMLLTWEEEFKKWGIDIPFYNLNKPELSGKENNGAVAL 180 (635)
Q Consensus 101 ~~~~g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qW~~E~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 180 (635)
.....+++..+.|+||+..|-++-....+.+. -+-|=|...--..+..|+--+..+ .+.+........
T Consensus 150 ~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~--fv~vnc~~~~~~~~~~~lfg~~~g----~~tga~~~~~g~------ 217 (368)
T 3dzd_A 150 KSKAPVLITGESGTGKEIVARLIHRYSGRKGA--FVDLNCASIPQELAESELFGHEKG----AFTGALTRKKGK------ 217 (368)
T ss_dssp TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSC--EEEEESSSSCTTTHHHHHHEECSC----SSSSCCCCEECH------
T ss_pred ccchhheEEeCCCchHHHHHHHHHHhccccCC--cEEEEcccCChHHHHHHhcCcccc----ccCCcccccCCh------
Q ss_pred HhhhhcCCCccceeeeeeeeccccCCCeEEeeHHHHHHhhcchhhhhhhccCCCEEEEeCCCcCCCcccHHHHHHHhccc
Q 006698 181 MDNRKRGRGKVGLIRYVKLYSWKMGTGILGLSYRLFEKLVSGDELSGILLDLPGLFVFDEGHTPRNDDTCMFKALSRIKT 260 (635)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~~~~~~~~~vIvDEaH~~kn~~s~~~~~l~~l~~ 260 (635)
+....=..+++||.|.+ +...+.+.+.-+..
T Consensus 218 -----------------------------------------------~~~a~~gtlfldei~~l--~~~~Q~~Ll~~l~~ 248 (368)
T 3dzd_A 218 -----------------------------------------------LELADQGTLFLDEVGEL--DQRVQAKLLRVLET 248 (368)
T ss_dssp -----------------------------------------------HHHTTTSEEEEETGGGS--CHHHHHHHHHHHHH
T ss_pred -----------------------------------------------HhhcCCCeEEecChhhC--CHHHHHHHHHHHHh
Q ss_pred CcEE-------------EEecc
Q 006698 261 RRRI-------------ILSGT 269 (635)
Q Consensus 261 ~~~l-------------~LTgT 269 (635)
.... ++++|
T Consensus 249 ~~~~~~g~~~~~~~~~rii~at 270 (368)
T 3dzd_A 249 GSFTRLGGNQKIEVDIRVISAT 270 (368)
T ss_dssp SEECCBTCCCBEECCCEEEEEE
T ss_pred CCcccCCCCcceeeeeEEEEec
No 482
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=25.59 E-value=73 Score=32.13 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=16.2
Q ss_pred ceEEeCCCCchHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~ 125 (635)
-.++..++|+|||-..-+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 468999999999966555553
No 483
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=25.57 E-value=1.8e+02 Score=23.50 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=10.8
Q ss_pred eEEEEcCChhHHHHHHHHHHhh
Q 006698 438 KVLVFSQYIEPLTLIMEQLRHR 459 (635)
Q Consensus 438 kviIFs~~~~~~~~l~~~L~~~ 459 (635)
+++|..........+...|...
T Consensus 6 ~ILivddd~~~~~~l~~~L~~~ 27 (152)
T 3heb_A 6 TIVMIEDDLGHARLIEKNIRRA 27 (152)
T ss_dssp EEEEECCCHHHHHHHHHHHHHT
T ss_pred eEEEEeCCHHHHHHHHHHHHhC
Confidence 4445544444455555555443
No 484
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=25.46 E-value=35 Score=32.87 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=20.3
Q ss_pred CCceEEeCCCCchHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQ 125 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~ 125 (635)
+.|+++..+.|+|||-.|++++.
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHHh
Confidence 56899999999999988888874
No 485
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=24.98 E-value=97 Score=25.33 Aligned_cols=17 Identities=24% Similarity=0.043 Sum_probs=9.0
Q ss_pred CCCChhhHHhhhhhhhh
Q 006698 521 VVWNPFVERQAISRAYR 537 (635)
Q Consensus 521 ~~wnp~~~~Qa~gR~~R 537 (635)
-|.++....+++.++.+
T Consensus 108 kp~~~~~L~~~i~~~~~ 124 (153)
T 3cz5_A 108 KSSDPAELVQAIEAILA 124 (153)
T ss_dssp TTSCTTHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHh
Confidence 34555555555555544
No 486
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=24.80 E-value=51 Score=25.56 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=29.1
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCce-EEEEeCCC
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQE-VLYMDGKQ 475 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~-~~~i~G~~ 475 (635)
++.++||||..-.........|... |+. +..++|++
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~-----G~~~v~~l~GG~ 87 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSA-----GFEHVSELKGGL 87 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHT-----TCSCEEECTTHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHc-----CCcCEEEecCCH
Confidence 6678999999877777788888876 875 78889985
No 487
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=24.80 E-value=63 Score=26.41 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=29.7
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCce-EEEEeCCC
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQE-VLYMDGKQ 475 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~-~~~i~G~~ 475 (635)
++.++||||+.-.........|... |+. +..++|++
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~-----G~~~v~~l~GG~ 121 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDM-----GLKPVAHIEGGF 121 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHH-----TCCSEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHc-----CCCCeEEecCCH
Confidence 6789999999876677778888877 875 88999985
No 488
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=24.74 E-value=37 Score=43.07 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=19.0
Q ss_pred CCceEEeCCCCchHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFL 124 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i 124 (635)
+++++|..++|+|||..|-.++
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l 1288 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNAL 1288 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 6799999999999998876655
No 489
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=24.68 E-value=1.4e+02 Score=26.87 Aligned_cols=45 Identities=18% Similarity=0.233 Sum_probs=27.6
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHHH-HhCCCCCcEEEeCccchHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAYM-KLHPRCRPVIIAPRSMLLTWE 149 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~~-~~~~~~~~LIv~P~~l~~qW~ 149 (635)
+.-..|..+.|+|||..+-.++.... .. ..+.+++.-.....+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~--~~~~~~~~~~~~~~~~~ 75 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLEERARDLR 75 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSCHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEccCCHHHHH
Confidence 45678899999999977766653332 22 33556666544444333
No 490
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=24.61 E-value=1.5e+02 Score=23.02 Aligned_cols=63 Identities=10% Similarity=0.123 Sum_probs=42.8
Q ss_pred ChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHH----HHHHHHHhcCCCCCcEEEEEccCCccccc
Q 006698 445 YIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKK----RQSSINVLNDPSSQARIMLASTKACCEGI 508 (635)
Q Consensus 445 ~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~----r~~~i~~F~~~~~~~~vll~st~~~~~Gl 508 (635)
+.+|.+.|+.+|...|+.. .+.+..+|=..++++ .++.+++-.+.+-=..+++++-...|+|-
T Consensus 28 SkeTyEWLqAal~RKyp~~-~f~~~YIDI~~~~~~l~d~~~~~ae~I~ede~FYPlV~indeiVaEGn 94 (111)
T 1xg8_A 28 SKDIYDWLQPLLKRKYPNI-SFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYPLITMNDEYVADGY 94 (111)
T ss_dssp HHHHHHHHHHHHHHHCTTS-CEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSSEEEETTEEEEESS
T ss_pred chhHHHHHHHHHhCcCCCC-ceEEEEEeccCCccchhHHHHHHHHHHhhccccceEEEECCEEeecCC
Confidence 4688899999999887532 566777776544333 56677777765544567777888888873
No 491
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=24.51 E-value=90 Score=34.92 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=20.8
Q ss_pred CceEEeCCCCchHHHHHHHHHHHHH
Q 006698 104 NGCIISHAPGTGKTGLTLVFLQAYM 128 (635)
Q Consensus 104 ~g~iLad~~GlGKT~~ai~~i~~~~ 128 (635)
...++..++|+|||..|-++...+.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999999999998888776554
No 492
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=24.51 E-value=4e+02 Score=24.23 Aligned_cols=95 Identities=16% Similarity=0.127 Sum_probs=57.6
Q ss_pred CccccchHHH-HHHHHH---h-----cCCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHh
Q 006698 417 DPEAGIKTRF-LLILLE---L-----STNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVL 487 (635)
Q Consensus 417 ~~~~s~K~~~-l~~~l~---~-----~~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F 487 (635)
.+..++|... +.-++. . ..+.++||.+..+..+.-+.+.+...+.. .+..+..+.|+.+....... .
T Consensus 98 a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~---~ 173 (262)
T 3ly5_A 98 AKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTH-HVHTYGLIMGGSNRSAEAQK---L 173 (262)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTT-CCSCEEEECSSSCHHHHHHH---H
T ss_pred ccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhh-cCceEEEEECCCCHHHHHHH---h
Confidence 3456778754 222332 1 14778999999998888877777765432 27788889998775544333 2
Q ss_pred cCCCCCcEEEEEccCC------cccccccccCCeEEE
Q 006698 488 NDPSSQARIMLASTKA------CCEGINLVGASRVVL 518 (635)
Q Consensus 488 ~~~~~~~~vll~st~~------~~~GlnL~~a~~vi~ 518 (635)
.. ++.|+++++.. ...++++.....||+
T Consensus 174 ~~---~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 174 GN---GINIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp HH---CCSEEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred cC---CCCEEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 22 15567754322 122456667777665
No 493
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=24.36 E-value=2.6e+02 Score=26.64 Aligned_cols=96 Identities=14% Similarity=0.186 Sum_probs=58.9
Q ss_pred CccccchHHHHHH-HHHhc---CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCC
Q 006698 417 DPEAGIKTRFLLI-LLELS---TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSS 492 (635)
Q Consensus 417 ~~~~s~K~~~l~~-~l~~~---~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~ 492 (635)
.+..++|...... ++... ++.++||.+.....+..+.+.+...++. .+..+..+.|+.........+ ..
T Consensus 51 ~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~---~~--- 123 (367)
T 1hv8_A 51 ARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGN-KNLKIAKIYGGKAIYPQIKAL---KN--- 123 (367)
T ss_dssp CCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCS-SCCCEEEECTTSCHHHHHHHH---HT---
T ss_pred CCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCC-CCceEEEEECCcchHHHHhhc---CC---
Confidence 3556788765433 33332 5789999999988888888888776543 267888899987755443332 22
Q ss_pred CcEEEEEccCCcc-----cccccccCCeEEEeC
Q 006698 493 QARIMLASTKACC-----EGINLVGASRVVLLD 520 (635)
Q Consensus 493 ~~~vll~st~~~~-----~GlnL~~a~~vi~~d 520 (635)
..|++++....- ..+++...+.||+=+
T Consensus 124 -~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 155 (367)
T 1hv8_A 124 -ANIVVGTPGRILDHINRGTLNLKNVKYFILDE 155 (367)
T ss_dssp -CSEEEECHHHHHHHHHTTCSCTTSCCEEEEET
T ss_pred -CCEEEecHHHHHHHHHcCCcccccCCEEEEeC
Confidence 346665544322 123455666666533
No 494
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=23.97 E-value=2.1e+02 Score=25.37 Aligned_cols=77 Identities=13% Similarity=0.160 Sum_probs=45.9
Q ss_pred CCCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcc-----cccc
Q 006698 435 TNEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACC-----EGIN 509 (635)
Q Consensus 435 ~~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~-----~Gln 509 (635)
.+.++||.+..+..+.-+.+.+.... ..+..+..+.|+.+...+.. .+.. +..|++++..... ..++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~---~~~iiv~Tp~~l~~~~~~~~~~ 164 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYS--YKGLKSICIYGGRNRNGQIE---DISK---GVDIIIATPGRLNDLQMNNSVN 164 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHC--CTTCCEEEECC------CHH---HHHS---CCSEEEECHHHHHHHHHTTCCC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhc--ccCceEEEEECCCChHHHHH---HhcC---CCCEEEECHHHHHHHHHcCCcC
Confidence 56789999999988888888777642 23788888888876554432 2332 2557776543322 2445
Q ss_pred cccCCeEEEe
Q 006698 510 LVGASRVVLL 519 (635)
Q Consensus 510 L~~a~~vi~~ 519 (635)
+...+.||+=
T Consensus 165 ~~~~~~lViD 174 (228)
T 3iuy_A 165 LRSITYLVID 174 (228)
T ss_dssp CTTCCEEEEC
T ss_pred cccceEEEEE
Confidence 6667766653
No 495
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=23.93 E-value=1.6e+02 Score=23.10 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=9.1
Q ss_pred eEEEEcCChhHHHHHHHHHH
Q 006698 438 KVLVFSQYIEPLTLIMEQLR 457 (635)
Q Consensus 438 kviIFs~~~~~~~~l~~~L~ 457 (635)
+++|..........+...|.
T Consensus 5 ~Ilivdd~~~~~~~l~~~L~ 24 (132)
T 3crn_A 5 RILIVDDDTAILDSTKQILE 24 (132)
T ss_dssp EEEEECSCHHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHH
Confidence 34444444444444444444
No 496
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=23.86 E-value=53 Score=28.23 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=18.1
Q ss_pred CCceEEeCCCCchHHHHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
+.-.+|...+|+|||.++=.+...+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456788999999997766655443
No 497
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=23.83 E-value=56 Score=31.17 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=24.5
Q ss_pred ceEEeCCCCchHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAYMKLHPRCRPVIIAP 141 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P 141 (635)
-.++....|.|||.++..++..+... .++++++.-
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~ 134 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGA 134 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEec
Confidence 45567899999998888777665443 346766654
No 498
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=23.82 E-value=3.1e+02 Score=23.93 Aligned_cols=92 Identities=12% Similarity=0.094 Sum_probs=63.3
Q ss_pred CCeEEEEcCChhHHHHHHHHHHhhhcccCCceEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEccCCcccccccccCCe
Q 006698 436 NEKVLVFSQYIEPLTLIMEQLRHRFNWREGQEVLYMDGKQDVKKRQSSINVLNDPSSQARIMLASTKACCEGINLVGASR 515 (635)
Q Consensus 436 ~~kviIFs~~~~~~~~l~~~L~~~~~~~~g~~~~~i~G~~~~~~r~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~ 515 (635)
..|+++.+.|..+.+.+.+.+.+. +..+..+.|... +-....... + .++.|+|. .||.+-=|...--
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~-----~~~i~i~~~~l~--~~v~~a~~~-~--~~~dVIIS---RGgta~~lr~~~~ 70 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEK-----NFIPITKTASLT--RASKIAFGL-Q--DEVDAIIS---RGATSDYIKKSVS 70 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHH-----TCEEEEEECCHH--HHHHHHHHH-T--TTCSEEEE---EHHHHHHHHTTCS
T ss_pred CCcEEEEEccHHHHHHHHHHHhhh-----CCceEEEECCHH--HHHHHHHHh-c--CCCeEEEE---CChHHHHHHHhCC
Confidence 458899999999999888888765 667778888863 333444444 4 33667772 3444444443333
Q ss_pred EEEeCCCCChhhHHhhhhhhhhcCC
Q 006698 516 VVLLDVVWNPFVERQAISRAYRLGQ 540 (635)
Q Consensus 516 vi~~d~~wnp~~~~Qa~gR~~R~GQ 540 (635)
+=..+.+.+..++.|++-++-+.++
T Consensus 71 iPVV~I~~s~~Dil~al~~a~~~~~ 95 (196)
T 2q5c_A 71 IPSISIKVTRFDTMRAVYNAKRFGN 95 (196)
T ss_dssp SCEEEECCCHHHHHHHHHHHGGGCS
T ss_pred CCEEEEcCCHhHHHHHHHHHHhhCC
Confidence 5566777899999999999988765
No 499
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=23.52 E-value=51 Score=29.35 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=16.8
Q ss_pred CCceEEeCCCCchHHHHHHHHH
Q 006698 103 GNGCIISHAPGTGKTGLTLVFL 124 (635)
Q Consensus 103 ~~g~iLad~~GlGKT~~ai~~i 124 (635)
+.-.+|..++|+|||-.+-.++
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~ 29 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVF 29 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHH
Confidence 4457889999999997665554
No 500
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=23.48 E-value=49 Score=32.51 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=18.1
Q ss_pred ceEEeCCCCchHHHHHHHHHHHH
Q 006698 105 GCIISHAPGTGKTGLTLVFLQAY 127 (635)
Q Consensus 105 g~iLad~~GlGKT~~ai~~i~~~ 127 (635)
+.+|...||+|||..+-+++..+
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 58899999999998776665433
Done!