Query 006699
Match_columns 635
No_of_seqs 329 out of 1046
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 06:36:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006699.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006699hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmn_A Homeobox protein TGIF2L 99.7 1.4E-18 4.9E-23 147.5 6.9 65 379-443 6-70 (83)
2 2lk2_A Homeobox protein TGIF1; 99.7 1.7E-18 5.9E-23 150.5 7.0 62 385-446 10-71 (89)
3 1x2n_A Homeobox protein pknox1 99.7 9.1E-18 3.1E-22 138.4 7.3 66 379-444 6-71 (73)
4 3k2a_A Homeobox protein MEIS2; 99.7 1.2E-17 4E-22 136.9 6.1 62 385-446 3-64 (67)
5 1du6_A PBX1, homeobox protein 99.7 7.5E-17 2.6E-21 129.7 7.3 62 380-441 3-64 (64)
6 1b72_B Protein (PBX1); homeodo 99.7 1.2E-16 4.1E-21 135.6 7.2 64 381-444 2-65 (87)
7 1puf_B PRE-B-cell leukemia tra 99.6 1.9E-16 6.6E-21 130.5 7.5 63 381-443 2-64 (73)
8 1k61_A Mating-type protein alp 99.6 3.6E-16 1.2E-20 124.2 7.0 58 384-441 2-59 (60)
9 1le8_B Mating-type protein alp 99.6 3.6E-16 1.2E-20 132.4 6.9 62 383-444 5-66 (83)
10 1mnm_C Protein (MAT alpha-2 tr 99.6 8.6E-16 2.9E-20 130.9 7.8 61 379-439 26-86 (87)
11 2ecc_A Homeobox and leucine zi 99.5 1.9E-14 6.5E-19 121.9 6.8 59 382-443 5-63 (76)
12 1akh_A Protein (mating-type pr 99.5 2.8E-14 9.5E-19 113.5 6.3 57 380-439 5-61 (61)
13 1bw5_A ISL-1HD, insulin gene e 99.5 4.3E-14 1.5E-18 114.3 7.1 61 379-442 2-62 (66)
14 2dmu_A Homeobox protein goosec 99.5 1.2E-13 4E-18 113.0 7.6 60 379-441 6-65 (70)
15 2da4_A Hypothetical protein DK 99.5 3.1E-14 1E-18 119.4 4.2 62 379-440 7-69 (80)
16 2cra_A Homeobox protein HOX-B1 99.4 1.4E-13 4.7E-18 112.8 7.8 61 379-442 6-66 (70)
17 2hdd_A Protein (engrailed home 99.4 1.2E-13 4.1E-18 110.2 6.7 58 380-440 3-60 (61)
18 2da2_A Alpha-fetoprotein enhan 99.4 1.7E-13 5.9E-18 111.8 7.7 60 379-441 6-65 (70)
19 2e1o_A Homeobox protein PRH; D 99.4 1.7E-13 5.8E-18 112.2 7.6 60 379-441 6-65 (70)
20 1ig7_A Homeotic protein MSX-1; 99.4 1.6E-13 5.6E-18 108.0 7.1 57 381-440 1-57 (58)
21 2djn_A Homeobox protein DLX-5; 99.4 1.5E-13 5.2E-18 112.5 6.7 60 379-441 6-65 (70)
22 2da3_A Alpha-fetoprotein enhan 99.4 1.6E-13 5.4E-18 114.4 6.9 60 379-441 16-75 (80)
23 2dmq_A LIM/homeobox protein LH 99.4 2.3E-13 8E-18 113.7 7.9 61 379-442 6-66 (80)
24 2da1_A Alpha-fetoprotein enhan 99.4 1.5E-13 5.1E-18 112.2 6.5 60 379-441 6-65 (70)
25 1jgg_A Segmentation protein EV 99.4 2.1E-13 7.2E-18 108.4 7.0 58 381-441 2-59 (60)
26 2h1k_A IPF-1, pancreatic and d 99.4 2.1E-13 7.1E-18 109.6 7.0 59 380-441 3-61 (63)
27 2dmt_A Homeobox protein BARH-l 99.4 3.1E-13 1.1E-17 113.4 8.0 61 379-442 16-76 (80)
28 2vi6_A Homeobox protein nanog; 99.4 2.7E-13 9.1E-18 108.5 6.9 58 380-440 3-60 (62)
29 2k40_A Homeobox expressed in E 99.4 2.2E-13 7.4E-18 110.5 6.4 59 381-442 2-60 (67)
30 1fjl_A Paired protein; DNA-bin 99.4 3.2E-13 1.1E-17 113.4 7.6 61 379-442 17-77 (81)
31 3rkq_A Homeobox protein NKX-2. 99.4 3.8E-13 1.3E-17 105.2 6.8 56 381-439 3-58 (58)
32 1nk2_P Homeobox protein VND; h 99.4 5.7E-13 1.9E-17 111.1 8.1 61 379-442 8-68 (77)
33 2l7z_A Homeobox protein HOX-A1 99.4 4.9E-13 1.7E-17 110.6 7.6 61 379-442 6-66 (73)
34 2dms_A Homeobox protein OTX2; 99.4 4.7E-13 1.6E-17 112.2 7.5 60 379-441 6-65 (80)
35 2cue_A Paired box protein PAX6 99.4 6.2E-13 2.1E-17 111.6 7.8 61 379-442 6-66 (80)
36 1zq3_P PRD-4, homeotic bicoid 99.4 5.1E-13 1.7E-17 109.0 6.7 59 380-441 2-60 (68)
37 2dn0_A Zinc fingers and homeob 99.4 5.4E-13 1.9E-17 111.0 7.0 60 379-441 7-66 (76)
38 3a02_A Homeobox protein arista 99.4 5.5E-13 1.9E-17 106.0 6.6 55 384-441 3-57 (60)
39 1ahd_P Antennapedia protein mu 99.4 4.7E-13 1.6E-17 109.3 6.2 59 380-441 2-60 (68)
40 1wh5_A ZF-HD homeobox family p 99.4 6.2E-13 2.1E-17 112.5 7.1 62 379-440 16-78 (80)
41 1ftt_A TTF-1 HD, thyroid trans 99.4 7.7E-13 2.6E-17 107.9 7.1 59 381-442 3-61 (68)
42 1puf_A HOX-1.7, homeobox prote 99.4 1.1E-12 3.8E-17 109.3 8.0 61 379-442 12-72 (77)
43 2kt0_A Nanog, homeobox protein 99.4 1.1E-12 3.7E-17 110.6 7.7 60 379-441 21-80 (84)
44 1yz8_P Pituitary homeobox 2; D 99.4 2.6E-13 9E-18 110.5 3.8 60 380-442 3-62 (68)
45 2m0c_A Homeobox protein arista 99.3 1.4E-12 4.9E-17 107.2 7.7 60 379-441 8-67 (75)
46 1b8i_A Ultrabithorax, protein 99.3 1.2E-12 4E-17 110.4 6.6 60 380-442 20-79 (81)
47 2hi3_A Homeodomain-only protei 99.3 1.5E-12 5.2E-17 107.5 7.1 59 381-441 3-61 (73)
48 3a01_A Homeodomain-containing 99.3 8.4E-13 2.9E-17 114.2 5.7 62 379-443 16-77 (93)
49 3nar_A ZHX1, zinc fingers and 99.3 2.1E-12 7.2E-17 112.1 7.9 66 380-448 25-90 (96)
50 2ly9_A Zinc fingers and homeob 99.3 2.5E-12 8.4E-17 106.0 7.8 59 380-441 6-64 (74)
51 2da5_A Zinc fingers and homeob 99.3 2.2E-12 7.4E-17 107.4 7.4 57 382-441 9-65 (75)
52 3a03_A T-cell leukemia homeobo 99.3 1.6E-12 5.4E-17 102.3 6.2 53 386-441 3-55 (56)
53 1uhs_A HOP, homeodomain only p 99.3 2E-12 7E-17 106.3 7.0 58 382-441 3-60 (72)
54 2cuf_A FLJ21616 protein; homeo 99.3 2E-12 6.8E-17 111.9 7.1 61 379-442 6-81 (95)
55 2d5v_A Hepatocyte nuclear fact 99.3 1.8E-12 6.1E-17 121.8 6.8 61 379-442 96-156 (164)
56 3nau_A Zinc fingers and homeob 99.3 2E-12 6.7E-17 107.0 5.9 55 386-443 10-64 (66)
57 3d1n_I POU domain, class 6, tr 99.3 2.8E-12 9.7E-17 119.4 7.6 59 379-440 92-150 (151)
58 2r5y_A Homeotic protein sex co 99.3 2.1E-12 7.3E-17 110.1 6.0 60 379-441 27-86 (88)
59 2ecb_A Zinc fingers and homeob 99.3 3.5E-12 1.2E-16 110.6 6.8 56 383-441 14-69 (89)
60 1b72_A Protein (homeobox prote 99.3 3.5E-12 1.2E-16 110.7 6.1 60 379-441 33-92 (97)
61 1wh7_A ZF-HD homeobox family p 99.3 4.4E-12 1.5E-16 107.6 5.7 61 379-440 16-78 (80)
62 2dmp_A Zinc fingers and homeob 99.2 9.1E-12 3.1E-16 107.1 7.0 55 383-440 16-70 (89)
63 1au7_A Protein PIT-1, GHF-1; c 99.2 1.5E-11 5.2E-16 114.4 7.3 60 379-441 86-145 (146)
64 2e19_A Transcription factor 8; 99.2 1.9E-11 6.4E-16 99.6 6.7 54 384-440 7-60 (64)
65 1e3o_C Octamer-binding transcr 99.2 1.7E-11 5.7E-16 115.4 7.1 60 379-441 100-159 (160)
66 2cqx_A LAG1 longevity assuranc 99.2 1.2E-11 4.2E-16 102.7 4.9 59 381-442 9-68 (72)
67 2xsd_C POU domain, class 3, tr 99.2 1.8E-11 6.2E-16 116.1 6.5 61 379-442 98-158 (164)
68 2da6_A Hepatocyte nuclear fact 99.2 3.5E-11 1.2E-15 107.1 7.5 61 379-442 5-86 (102)
69 2l9r_A Homeobox protein NKX-3. 99.1 4.5E-11 1.5E-15 99.1 6.4 54 386-442 10-63 (69)
70 1wi3_A DNA-binding protein SAT 99.1 9.9E-11 3.4E-15 97.8 7.4 60 379-440 6-65 (71)
71 3l1p_A POU domain, class 5, tr 99.1 3.6E-11 1.2E-15 112.8 5.1 59 379-440 95-153 (155)
72 1lfb_A Liver transcription fac 99.1 6.6E-11 2.2E-15 104.3 5.6 60 380-442 9-89 (99)
73 1x2m_A LAG1 longevity assuranc 99.1 1.3E-10 4.3E-15 95.5 5.4 51 389-441 9-59 (64)
74 1mh3_A Maltose binding-A1 home 98.9 7.9E-10 2.7E-14 113.2 5.8 53 384-439 369-421 (421)
75 2h8r_A Hepatocyte nuclear fact 98.9 1.2E-09 4E-14 108.8 6.7 57 380-439 142-219 (221)
76 1ic8_A Hepatocyte nuclear fact 98.9 8.5E-10 2.9E-14 107.7 3.8 58 380-440 115-193 (194)
77 2da7_A Zinc finger homeobox pr 98.8 5.9E-09 2E-13 87.3 6.0 46 389-437 14-59 (71)
78 2nzz_A Penetratin conjugated G 96.2 0.00081 2.8E-08 50.0 0.1 20 425-444 1-20 (37)
79 2ys9_A Homeobox and leucine zi 92.7 0.065 2.2E-06 44.9 3.0 44 387-433 13-56 (70)
80 3hug_A RNA polymerase sigma fa 72.8 3.9 0.00013 33.8 4.5 49 386-442 37-85 (92)
81 1tty_A Sigma-A, RNA polymerase 71.8 4.9 0.00017 33.1 4.8 52 386-445 18-73 (87)
82 1hlv_A CENP-B, major centromer 69.8 10 0.00034 32.8 6.7 50 382-437 3-52 (131)
83 1ku3_A Sigma factor SIGA; heli 68.2 4.6 0.00016 32.0 3.8 50 386-443 10-64 (73)
84 2glo_A Brinker CG9653-PA; prot 66.3 8.4 0.00029 29.5 4.8 46 384-433 3-48 (59)
85 3mzy_A RNA polymerase sigma-H 63.8 7 0.00024 33.9 4.4 48 386-442 109-156 (164)
86 2elh_A CG11849-PA, LD40883P; s 63.7 9.2 0.00031 31.6 4.9 45 380-432 16-60 (87)
87 2o8x_A Probable RNA polymerase 63.0 6.9 0.00024 29.9 3.8 49 386-442 15-63 (70)
88 2p7v_B Sigma-70, RNA polymeras 60.5 6 0.00021 30.9 3.1 50 386-443 5-58 (68)
89 3t72_q RNA polymerase sigma fa 56.7 19 0.00064 31.2 5.8 59 386-448 19-77 (99)
90 1fse_A GERE; helix-turn-helix 55.6 21 0.00071 27.5 5.4 54 383-445 8-61 (74)
91 1s7o_A Hypothetical UPF0122 pr 55.1 19 0.00066 31.6 5.7 50 386-443 22-71 (113)
92 1tc3_C Protein (TC3 transposas 52.8 28 0.00095 24.0 5.3 43 385-435 4-46 (51)
93 1je8_A Nitrate/nitrite respons 51.8 15 0.00052 29.9 4.2 53 386-447 21-73 (82)
94 1rp3_A RNA polymerase sigma fa 49.8 11 0.00038 34.8 3.5 49 386-442 187-235 (239)
95 1x3u_A Transcriptional regulat 49.6 13 0.00045 29.2 3.4 52 387-447 17-68 (79)
96 1or7_A Sigma-24, RNA polymeras 47.3 16 0.00053 32.9 4.0 49 386-442 140-188 (194)
97 1xsv_A Hypothetical UPF0122 pr 46.4 24 0.00083 30.7 4.9 51 386-444 25-75 (113)
98 1p4w_A RCSB; solution structur 43.2 51 0.0018 28.2 6.4 54 384-446 32-85 (99)
99 2rnj_A Response regulator prot 42.5 38 0.0013 27.8 5.3 52 386-446 29-80 (91)
100 1iuf_A Centromere ABP1 protein 39.7 32 0.0011 31.0 4.7 52 380-434 5-60 (144)
101 3c57_A Two component transcrip 39.3 29 0.00099 29.0 4.1 49 385-442 26-74 (95)
102 2q1z_A RPOE, ECF SIGE; ECF sig 36.7 12 0.00041 33.5 1.4 48 386-441 135-182 (184)
103 3lsg_A Two-component response 33.4 59 0.002 26.8 5.1 41 391-434 3-43 (103)
104 1jko_C HIN recombinase, DNA-in 33.4 24 0.00081 24.9 2.3 41 386-434 5-45 (52)
105 1l9z_H Sigma factor SIGA; heli 31.2 51 0.0017 35.7 5.4 54 386-443 375-429 (438)
106 2rn7_A IS629 ORFA; helix, all 30.4 97 0.0033 25.8 6.0 49 384-433 4-53 (108)
107 1wlx_A Alpha-actinin 4; three- 29.7 1.3E+02 0.0045 27.6 7.1 69 260-330 45-116 (129)
108 3clo_A Transcriptional regulat 29.3 58 0.002 31.6 5.0 54 385-447 196-249 (258)
109 2jn6_A Protein CGL2762, transp 29.2 61 0.0021 26.6 4.5 46 384-435 3-48 (97)
110 2jpc_A SSRB; DNA binding prote 27.6 51 0.0018 24.5 3.4 47 391-446 3-49 (61)
111 1l0o_C Sigma factor; bergerat 27.2 13 0.00045 34.2 0.0 46 386-439 198-243 (243)
112 2a6c_A Helix-turn-helix motif; 26.7 61 0.0021 25.8 3.9 26 413-438 34-59 (83)
113 3b7h_A Prophage LP1 protein 11 24.4 57 0.002 24.9 3.3 23 413-435 23-45 (78)
114 2xi8_A Putative transcription 24.2 37 0.0013 25.0 2.1 23 413-435 17-39 (66)
115 2r1j_L Repressor protein C2; p 23.7 39 0.0013 25.0 2.1 23 413-435 21-43 (68)
116 1zug_A Phage 434 CRO protein; 22.8 40 0.0014 25.3 2.0 24 413-436 19-42 (71)
117 3bd1_A CRO protein; transcript 22.7 43 0.0015 26.3 2.3 23 413-435 14-36 (79)
118 3ulq_B Transcriptional regulat 22.4 1.2E+02 0.004 25.3 5.0 51 384-443 27-77 (90)
119 1hlv_A CENP-B, major centromer 22.3 2E+02 0.0068 24.5 6.7 58 380-438 66-130 (131)
120 3qq6_A HTH-type transcriptiona 22.2 61 0.0021 25.7 3.1 27 413-439 26-52 (78)
121 2k27_A Paired box protein PAX- 22.2 2E+02 0.0068 25.5 6.9 50 384-436 81-137 (159)
122 2a6h_F RNA polymerase sigma fa 21.4 51 0.0017 35.1 3.2 53 386-442 360-413 (423)
123 2q0o_A Probable transcriptiona 20.9 68 0.0023 30.5 3.7 50 384-442 173-222 (236)
124 1adr_A P22 C2 repressor; trans 20.8 47 0.0016 25.2 2.1 24 413-436 21-44 (76)
125 3bs3_A Putative DNA-binding pr 20.7 49 0.0017 25.2 2.1 23 413-435 26-48 (76)
126 1pdn_C Protein (PRD paired); p 20.2 1.6E+02 0.0054 24.2 5.4 46 385-433 74-126 (128)
No 1
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-18 Score=147.55 Aligned_cols=65 Identities=42% Similarity=0.784 Sum_probs=60.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMV 443 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~i 443 (635)
.++|+|+.|+++++.+|+.||.+|..||||+.++|..||.+|||++.||.+||+|+|+|.|++++
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 44566667999999999999999999999999999999999999999999999999999998775
No 2
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-18 Score=150.50 Aligned_cols=62 Identities=50% Similarity=0.835 Sum_probs=58.4
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHH
Q 006699 385 RGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEM 446 (635)
Q Consensus 385 R~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~iee~ 446 (635)
--||++++.+|++||.+|..||||++++|.+||++|||++.||+|||+|+|+|.|++++++.
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~~ 71 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKD 71 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHhc
Confidence 34999999999999999999999999999999999999999999999999999999887543
No 3
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=9.1e-18 Score=138.44 Aligned_cols=66 Identities=41% Similarity=0.724 Sum_probs=61.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHH
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVE 444 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ie 444 (635)
..+|+++.|+++++.+|+.||.+|..+|||+..+|..||.+|||++.||.+||+|+|+|.|+++++
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 445666679999999999999999999999999999999999999999999999999999998763
No 4
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=1.2e-17 Score=136.88 Aligned_cols=62 Identities=48% Similarity=0.940 Sum_probs=54.5
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHH
Q 006699 385 RGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEM 446 (635)
Q Consensus 385 R~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~iee~ 446 (635)
.+||++++.+|+.||.+|+.||||+..+|..||..|||+..||++||+|+|+|.|++++++.
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 46999999999999999999999999999999999999999999999999999999987653
No 5
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=7.5e-17 Score=129.65 Aligned_cols=62 Identities=35% Similarity=0.646 Sum_probs=58.1
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 380 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 380 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
.+|+++.|+++++.+|+.||.+|..+|||+.+++..||..|||++.||.+||+|+|+|.||+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 45667789999999999999999999999999999999999999999999999999999874
No 6
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.65 E-value=1.2e-16 Score=135.62 Aligned_cols=64 Identities=36% Similarity=0.687 Sum_probs=59.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHH
Q 006699 381 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVE 444 (635)
Q Consensus 381 kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ie 444 (635)
+|+|+.|+++++.+|+.||.+|..+|||+..+|..||..+||++.||.+||+|+|+|.|+.+.+
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 5667789999999999999999999999999999999999999999999999999999987753
No 7
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.65 E-value=1.9e-16 Score=130.50 Aligned_cols=63 Identities=37% Similarity=0.691 Sum_probs=59.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 006699 381 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMV 443 (635)
Q Consensus 381 kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~i 443 (635)
+|+++.|+++++.+|+.||.+|..+|||+..++..||..|||+..||.+||+|+|+|.|+.+.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccc
Confidence 567778999999999999999999999999999999999999999999999999999988653
No 8
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.63 E-value=3.6e-16 Score=124.21 Aligned_cols=58 Identities=26% Similarity=0.455 Sum_probs=55.2
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 384 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 384 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
+++|+++++.+|+.||..|+.+|||+..++..||.++||++.||.+||+|+|+|.|+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 5679999999999999999999999999999999999999999999999999998763
No 9
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.62 E-value=3.6e-16 Score=132.44 Aligned_cols=62 Identities=23% Similarity=0.429 Sum_probs=57.7
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHH
Q 006699 383 PQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVE 444 (635)
Q Consensus 383 ~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ie 444 (635)
++++|+.+++.+|+.||..|+.+|||+..++..||..|||+..||.+||+|+|+|.|+..+.
T Consensus 5 rr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 5 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 34459999999999999999999999999999999999999999999999999999987653
No 10
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.61 E-value=8.6e-16 Score=130.87 Aligned_cols=61 Identities=25% Similarity=0.399 Sum_probs=56.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW 439 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlk 439 (635)
.++|+++.|+++++.+|+.||..|+.+|||+..+|..||..|||++.||.+||+|+|+|.|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 4455566799999999999999999999999999999999999999999999999999976
No 11
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=1.9e-14 Score=121.86 Aligned_cols=59 Identities=19% Similarity=0.423 Sum_probs=54.8
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 006699 382 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMV 443 (635)
Q Consensus 382 R~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~i 443 (635)
+++++|+++|+.+|+.||.. +|||+..+|.+||+.|||++.||.+||+|+|+|.|+..+
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~---~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ---CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 45677999999999999998 699999999999999999999999999999999887654
No 12
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.49 E-value=2.8e-14 Score=113.47 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=47.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc
Q 006699 380 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW 439 (635)
Q Consensus 380 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlk 439 (635)
++|++..|+.+++.+|+.||.. +|||+..++..||..+||++.||.+||+|+|+|.+
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 4556667999999999999998 69999999999999999999999999999999864
No 13
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.48 E-value=4.3e-14 Score=114.35 Aligned_cols=61 Identities=30% Similarity=0.389 Sum_probs=56.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 442 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 442 (635)
+++|++..|+.+++.+|+.||.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 35677778999999999999998 79999999999999999999999999999999998754
No 14
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.2e-13 Score=113.00 Aligned_cols=60 Identities=23% Similarity=0.390 Sum_probs=55.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
.++|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQE---TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCCCHHHeehcccccccccccc
Confidence 45666777999999999999998 7999999999999999999999999999999998874
No 15
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=3.1e-14 Score=119.39 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=55.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHc-cCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEH-FLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 440 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH-~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkK 440 (635)
.++|+|..|+.+++.+|+.||..+ ..+|||+..++..||..+||++.||.+||+|+|+|.++
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk 69 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRL 69 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhh
Confidence 345666679999999999999885 44599999999999999999999999999999999876
No 16
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.45 E-value=1.4e-13 Score=112.76 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=55.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 442 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 442 (635)
..+|+|+.|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 45566777999999999999998 79999999999999999999999999999999998753
No 17
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.44 E-value=1.2e-13 Score=110.15 Aligned_cols=58 Identities=24% Similarity=0.473 Sum_probs=51.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 006699 380 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 440 (635)
Q Consensus 380 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkK 440 (635)
++|+|..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4566777999999999999998 799999999999999999999999999999999876
No 18
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.44 E-value=1.7e-13 Score=111.82 Aligned_cols=60 Identities=22% Similarity=0.367 Sum_probs=55.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
..+|+++.|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 6 SGRSSRTRFTDYQLRVLQDFFDA---NAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 44566677999999999999998 7999999999999999999999999999999999874
No 19
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.44 E-value=1.7e-13 Score=112.20 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=55.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
..+|+++.|+.+++.+|+.||.. +|||+..++..||..+||++.||.+||+|+|+|.|+.
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRS 65 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCC
Confidence 45566777999999999999988 7999999999999999999999999999999998764
No 20
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.44 E-value=1.6e-13 Score=108.03 Aligned_cols=57 Identities=19% Similarity=0.340 Sum_probs=53.2
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 006699 381 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 440 (635)
Q Consensus 381 kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkK 440 (635)
+|++..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 356777999999999999998 799999999999999999999999999999999875
No 21
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.5e-13 Score=112.49 Aligned_cols=60 Identities=23% Similarity=0.366 Sum_probs=55.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
.++|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQK---TQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 45566777999999999999987 7999999999999999999999999999999998874
No 22
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.43 E-value=1.6e-13 Score=114.38 Aligned_cols=60 Identities=22% Similarity=0.320 Sum_probs=55.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
.++|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|+|.|+.
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~f~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 16 RDKRLRTTITPEQLEILYQKYLL---DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp CCTTCCSSCCTTTHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 45566677999999999999998 6999999999999999999999999999999998874
No 23
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.3e-13 Score=113.69 Aligned_cols=61 Identities=21% Similarity=0.435 Sum_probs=56.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 442 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 442 (635)
.++|+|+.|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFAI---NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 45677777999999999999998 79999999999999999999999999999999998743
No 24
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.43 E-value=1.5e-13 Score=112.20 Aligned_cols=60 Identities=22% Similarity=0.421 Sum_probs=55.3
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
.++|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDI---NNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 45666777999999999999998 7999999999999999999999999999999998874
No 25
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.42 E-value=2.1e-13 Score=108.40 Aligned_cols=58 Identities=22% Similarity=0.338 Sum_probs=53.5
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 381 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 381 kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
+|++..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK---ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 466777999999999999998 7999999999999999999999999999999998763
No 26
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.42 E-value=2.1e-13 Score=109.57 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=53.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 380 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 380 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
++|+|..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLF---NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 4566777999999999999998 7999999999999999999999999999999998874
No 27
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3.1e-13 Score=113.45 Aligned_cols=61 Identities=28% Similarity=0.335 Sum_probs=55.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 442 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 442 (635)
..+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|+|.||..
T Consensus 16 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 16 KGRRSRTVFTELQLMGLEKRFEK---QKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCSCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 44566667999999999999998 79999999999999999999999999999999998753
No 28
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.41 E-value=2.7e-13 Score=108.47 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=51.2
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 006699 380 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 440 (635)
Q Consensus 380 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkK 440 (635)
++|++..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr 60 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQK---QKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhh
Confidence 4566777999999999999988 799999999999999999999999999999999886
No 29
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.41 E-value=2.2e-13 Score=110.53 Aligned_cols=59 Identities=24% Similarity=0.369 Sum_probs=54.8
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006699 381 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 442 (635)
Q Consensus 381 kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 442 (635)
+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV---NCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 566778999999999999987 79999999999999999999999999999999988754
No 30
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.41 E-value=3.2e-13 Score=113.41 Aligned_cols=61 Identities=25% Similarity=0.408 Sum_probs=55.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 442 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 442 (635)
.++|+|..|+..++.+|+.||.. +|||+..++..||..+||++.||.+||+|+|+|.|+..
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 44566667999999999999988 79999999999999999999999999999999988743
No 31
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.40 E-value=3.8e-13 Score=105.19 Aligned_cols=56 Identities=25% Similarity=0.330 Sum_probs=51.9
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc
Q 006699 381 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW 439 (635)
Q Consensus 381 kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlk 439 (635)
+|++..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|
T Consensus 3 rr~Rt~~t~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERRFKQ---QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 456667999999999999986 79999999999999999999999999999999865
No 32
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.39 E-value=5.7e-13 Score=111.09 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=55.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 442 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 442 (635)
.++|+|..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 8 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~ 68 (77)
T 1nk2_P 8 KKRKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQ 68 (77)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhh
Confidence 34555666999999999999998 79999999999999999999999999999999988754
No 33
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.39 E-value=4.9e-13 Score=110.58 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=55.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 442 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 442 (635)
..+|+|..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYAT---NKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHH---TSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhh---CCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 34566667999999999999998 79999999999999999999999999999999998753
No 34
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.39 E-value=4.7e-13 Score=112.19 Aligned_cols=60 Identities=23% Similarity=0.365 Sum_probs=54.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
..+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~ 65 (80)
T 2dms_A 6 SGRRERTTFTRAQLDVLEALFAK---TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 65 (80)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHH
Confidence 45566667999999999999998 7999999999999999999999999999999998763
No 35
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.38 E-value=6.2e-13 Score=111.59 Aligned_cols=61 Identities=18% Similarity=0.342 Sum_probs=55.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 442 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 442 (635)
.++|+|+.|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFER---THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 66 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHh
Confidence 45566777999999999999987 79999999999999999999999999999999998854
No 36
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.38 E-value=5.1e-13 Score=108.95 Aligned_cols=59 Identities=22% Similarity=0.319 Sum_probs=54.7
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 380 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 380 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
++|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~ 60 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ---GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQ 60 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHH
Confidence 4567777999999999999987 7999999999999999999999999999999998874
No 37
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=5.4e-13 Score=110.96 Aligned_cols=60 Identities=20% Similarity=0.334 Sum_probs=54.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
.+.+.|+.|+++++.+|+.||.. +|||+..++..||+.+||++.||.+||+|+|.|.|+.
T Consensus 7 ~~~~~R~~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~ 66 (76)
T 2dn0_A 7 GASIYKNKKSHEQLSALKGSFCR---NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNL 66 (76)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---SSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHh
Confidence 34455677999999999999988 7999999999999999999999999999999998874
No 38
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.38 E-value=5.5e-13 Score=105.98 Aligned_cols=55 Identities=22% Similarity=0.379 Sum_probs=49.7
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 384 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 384 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|+|.|+.
T Consensus 3 Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSR---THYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp --CCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred CcccCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 567999999999999988 7999999999999999999999999999999999874
No 39
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.37 E-value=4.7e-13 Score=109.28 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=54.5
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 380 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 380 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
++|++..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 60 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 60 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHh
Confidence 3566777999999999999998 7999999999999999999999999999999998874
No 40
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.37 E-value=6.2e-13 Score=112.53 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=55.7
Q ss_pred CCCCCCCCCChhHHHHHHHHHHH-ccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFE-HFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 440 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~e-H~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkK 440 (635)
.++|+|+.|+.+++.+|+.+|.. ++.+|||+..+|.+||..+||++.||.+||+|+|.|.++
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 44566667999999999999886 566799999999999999999999999999999999875
No 41
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.37 E-value=7.7e-13 Score=107.87 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=54.3
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006699 381 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 442 (635)
Q Consensus 381 kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 442 (635)
+|++..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++..
T Consensus 3 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 3 RKRRVLFSQAQVYELERRFKQ---QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCccCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 456667999999999999998 79999999999999999999999999999999988743
No 42
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.36 E-value=1.1e-12 Score=109.29 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=55.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 442 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 442 (635)
..+|++..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++..
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 72 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKIN 72 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhh
Confidence 34556667999999999999998 79999999999999999999999999999999998754
No 43
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.36 E-value=1.1e-12 Score=110.60 Aligned_cols=60 Identities=22% Similarity=0.262 Sum_probs=55.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
.++|+|..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 21 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 80 (84)
T 2kt0_A 21 KKQKTRTVFSSTQLCVLNDRFQR---QKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRW 80 (84)
T ss_dssp CSCCCSSCCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 45566667999999999999988 7999999999999999999999999999999998874
No 44
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.36 E-value=2.6e-13 Score=110.48 Aligned_cols=60 Identities=23% Similarity=0.354 Sum_probs=55.0
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006699 380 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 442 (635)
Q Consensus 380 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 442 (635)
++|++..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQR---NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTT---CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 4566777999999999999987 79999999999999999999999999999999987643
No 45
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.35 E-value=1.4e-12 Score=107.20 Aligned_cols=60 Identities=23% Similarity=0.364 Sum_probs=54.6
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
.++|++..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 8 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 8 KKRRNRTTFTSYQLEELEKVFQK---THYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp CCCSCSCSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 34555666999999999999998 7999999999999999999999999999999998874
No 46
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.34 E-value=1.2e-12 Score=110.44 Aligned_cols=60 Identities=20% Similarity=0.290 Sum_probs=52.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006699 380 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 442 (635)
Q Consensus 380 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 442 (635)
.+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.||..
T Consensus 20 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 20 RRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcccCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 4566677999999999999998 79999999999999999999999999999999988753
No 47
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.34 E-value=1.5e-12 Score=107.46 Aligned_cols=59 Identities=19% Similarity=0.309 Sum_probs=53.1
Q ss_pred CCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 381 WRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 381 kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
.++|+.|+.+++.+|+.+|... +|||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~--~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~ 61 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKV--NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 61 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHT--TSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 3556679999999999999831 6999999999999999999999999999999998873
No 48
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.33 E-value=8.4e-13 Score=114.25 Aligned_cols=62 Identities=21% Similarity=0.417 Sum_probs=56.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMV 443 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~i 443 (635)
..+|+|..|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+...
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHK---QKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhH
Confidence 34556667999999999999998 799999999999999999999999999999999987653
No 49
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.33 E-value=2.1e-12 Score=112.09 Aligned_cols=66 Identities=18% Similarity=0.322 Sum_probs=58.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHHHH
Q 006699 380 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYL 448 (635)
Q Consensus 380 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~iee~~~ 448 (635)
.+|+|+.|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+..++-+..
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~~~~ 90 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVR---TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKWYYY 90 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccHHHH
Confidence 4466777999999999999998 79999999999999999999999999999999999987766554
No 50
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.33 E-value=2.5e-12 Score=106.03 Aligned_cols=59 Identities=17% Similarity=0.411 Sum_probs=54.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 380 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 380 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
+++.|+.|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 64 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLK---NQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNS 64 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhh
Confidence 4566777999999999999998 7999999999999999999999999999999998874
No 51
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=2.2e-12 Score=107.37 Aligned_cols=57 Identities=18% Similarity=0.367 Sum_probs=52.8
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 382 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 382 R~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
+++++|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQ---NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAE 65 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHS
T ss_pred CCCccCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHh
Confidence 45566999999999999998 7999999999999999999999999999999998763
No 52
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.32 E-value=1.6e-12 Score=102.31 Aligned_cols=53 Identities=21% Similarity=0.437 Sum_probs=49.7
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 386 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 386 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
.|+++++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.||.
T Consensus 3 ~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 3 SFSRSQVLELERRFLR---QKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp -CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHh---cCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 5899999999999998 7999999999999999999999999999999998763
No 53
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.32 E-value=2e-12 Score=106.30 Aligned_cols=58 Identities=17% Similarity=0.331 Sum_probs=52.8
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 382 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 382 R~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
++++.|+.+++.+|+.+|.. .+|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~--~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~ 60 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNK--VNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 60 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHS--SCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHc--cCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhh
Confidence 45677999999999999973 16999999999999999999999999999999998873
No 54
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.32 E-value=2e-12 Score=111.90 Aligned_cols=61 Identities=18% Similarity=0.392 Sum_probs=55.5
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC---------------CChhhHhhhhhhhhhhhchhh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTG---------------LSRSQVSNWFINARVRLWKPM 442 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTG---------------LS~~QVsNWFiNaRrRlkKp~ 442 (635)
.++|+|..|++.++.+|+.||.+ +|||+..+|+.||..++ |++.||.+||+|+|+|.|+..
T Consensus 6 ~~rr~R~~ft~~ql~~Le~~F~~---~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 6 SGRGSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp CCCCCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 44566667999999999999999 79999999999999999 999999999999999998743
No 55
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.31 E-value=1.8e-12 Score=121.80 Aligned_cols=61 Identities=31% Similarity=0.384 Sum_probs=53.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 442 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 442 (635)
.++|+|..|+..++.+|+.||.. +|||+..+|..||..+||++.||.+||+|+|+|.|+..
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKE---NKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 45666777999999999999999 69999999999999999999999999999999998743
No 56
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.30 E-value=2e-12 Score=107.04 Aligned_cols=55 Identities=27% Similarity=0.529 Sum_probs=50.6
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 006699 386 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMV 443 (635)
Q Consensus 386 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~i 443 (635)
.-+++++.+|+.+|.. +|||+..++.+||..|||++.||.+||+|+|.|.|+..+
T Consensus 10 ~~~~~Ql~~LE~~F~~---~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~~ 64 (66)
T 3nau_A 10 KKTKEQIAHLKASFLQ---SQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGIV 64 (66)
T ss_dssp -CCHHHHHHHHHHHHG---GGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccCc
Confidence 3489999999999999 799999999999999999999999999999999887543
No 57
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.30 E-value=2.8e-12 Score=119.39 Aligned_cols=59 Identities=20% Similarity=0.420 Sum_probs=54.1
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 440 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkK 440 (635)
+++|+|..|+..++.+|+.||.. +|||+..++..||+.+||++.||.+||+|+|+|.||
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEK---NPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 34555666999999999999998 799999999999999999999999999999999886
No 58
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.30 E-value=2.1e-12 Score=110.12 Aligned_cols=60 Identities=18% Similarity=0.234 Sum_probs=52.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
..+|+|..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 45566777999999999999987 7999999999999999999999999999999998764
No 59
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.29 E-value=3.5e-12 Score=110.64 Aligned_cols=56 Identities=20% Similarity=0.285 Sum_probs=51.6
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 383 PQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 383 ~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
+.+.|+.+|+.+|+.||.. ++||+..+|..||..|||++.||.+||+|+|+|.++.
T Consensus 14 k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~ 69 (89)
T 2ecb_A 14 KFKEKTAEQLRVLQASFLN---SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 69 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSC
T ss_pred hhccCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHH
Confidence 3457999999999999998 7999999999999999999999999999999997653
No 60
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.27 E-value=3.5e-12 Score=110.73 Aligned_cols=60 Identities=23% Similarity=0.311 Sum_probs=52.9
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
.++|+|..|+.+++.+|+.+|.. ++||+..++..||..+||++.||.+||+|+|.|.|+.
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 92 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHF---NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 92 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHH
Confidence 45566777999999999999987 7999999999999999999999999999999998874
No 61
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.26 E-value=4.4e-12 Score=107.64 Aligned_cols=61 Identities=15% Similarity=0.110 Sum_probs=53.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccC--CCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFL--HPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 440 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~--nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkK 440 (635)
.++|+|..|+.+++.+|+ -|.+++- +|||+..+|.+||..+||++.||++||+|+|.|.++
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 16 TTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 455666679999999999 5777443 899999999999999999999999999999999875
No 62
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=9.1e-12 Score=107.07 Aligned_cols=55 Identities=20% Similarity=0.358 Sum_probs=50.8
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 006699 383 PQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 440 (635)
Q Consensus 383 ~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkK 440 (635)
+.++|+.+++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|+|.++
T Consensus 16 k~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~ 70 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLK---SSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDS 70 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHH
Confidence 3445999999999999998 799999999999999999999999999999998765
No 63
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.21 E-value=1.5e-11 Score=114.38 Aligned_cols=60 Identities=22% Similarity=0.293 Sum_probs=53.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
.++|+|+.|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.||.
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 34556667999999999999998 7999999999999999999999999999999998863
No 64
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=1.9e-11 Score=99.56 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=49.7
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 006699 384 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 440 (635)
Q Consensus 384 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkK 440 (635)
+..+.++++.+|+.+|.. +|||+..+|..||+.+||++.||.+||+|+|.|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYAL---NAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 345679999999999987 799999999999999999999999999999999775
No 65
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.20 E-value=1.7e-11 Score=115.44 Aligned_cols=60 Identities=17% Similarity=0.302 Sum_probs=53.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
.++|+|+.|+..++.+|+.+|.. +|||+..++..||+.+||++.||.+||+|+|+|.||.
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 34556667999999999999998 7999999999999999999999999999999999874
No 66
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.19 E-value=1.2e-11 Score=102.66 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=53.1
Q ss_pred CCCCCCCChhHHHHHHHHH-HHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006699 381 WRPQRGLPERSVSVLRAWL-FEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 442 (635)
Q Consensus 381 kR~rR~fpk~qv~iLr~Wf-~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 442 (635)
.++++.++.+++.+|+..| .. ++||+..++..||.++||++.||.+||+|+|.|.++..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~---~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSV---TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 4556678999999999999 65 79999999999999999999999999999999988653
No 67
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.18 E-value=1.8e-11 Score=116.08 Aligned_cols=61 Identities=20% Similarity=0.275 Sum_probs=50.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 442 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 442 (635)
+++|+|+.|+..++.+|+.+|.. +|||+..+|..||+.+||++.||.+||+|+|.|.||..
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLK---CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp --------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred cCCCCceeccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 34556667999999999999998 79999999999999999999999999999999998754
No 68
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=3.5e-11 Score=107.09 Aligned_cols=61 Identities=20% Similarity=0.171 Sum_probs=54.8
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHh---------------------CCChhhHhhhhhhhhhh
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQT---------------------GLSRSQVSNWFINARVR 437 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qT---------------------GLS~~QVsNWFiNaRrR 437 (635)
.++|+|..|++.++.+|+.+|.. +|||+..+|++||..+ .|++.+|.+||+|+|+|
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~---~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 34566667999999999999998 7999999999999999 79999999999999999
Q ss_pred hchhh
Q 006699 438 LWKPM 442 (635)
Q Consensus 438 lkKp~ 442 (635)
.++..
T Consensus 82 ~kr~~ 86 (102)
T 2da6_A 82 EAFRQ 86 (102)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 87754
No 69
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.14 E-value=4.5e-11 Score=99.07 Aligned_cols=54 Identities=24% Similarity=0.333 Sum_probs=50.6
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006699 386 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 442 (635)
Q Consensus 386 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 442 (635)
-++..++..|+.+|.. +|||+..+|..||+.+||++.||.+||+|+|.|.|+..
T Consensus 10 ~~t~~ql~~LE~~F~~---~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 10 HMSHTQVIELERKFSH---QKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred cCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 3789999999999988 79999999999999999999999999999999988754
No 70
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.12 E-value=9.9e-11 Score=97.78 Aligned_cols=60 Identities=18% Similarity=0.356 Sum_probs=55.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 440 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkK 440 (635)
.++|+|+.|+.+|..+|+..|..- +|||+.++++.||.+|||++.+|..||+|+|--++.
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~--~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~ 65 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDV--GLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHH--CSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCS
T ss_pred CCCCCCccCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecC
Confidence 577888889999999999999982 599999999999999999999999999999987664
No 71
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.11 E-value=3.6e-11 Score=112.76 Aligned_cols=59 Identities=25% Similarity=0.340 Sum_probs=54.4
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhch
Q 006699 379 HPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWK 440 (635)
Q Consensus 379 ~~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkK 440 (635)
.++|+|..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.||
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr 153 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLK---SPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKR 153 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTT---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcccCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHcCCChhheeeccccccccccC
Confidence 45666667999999999999986 799999999999999999999999999999999876
No 72
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.10 E-value=6.6e-11 Score=104.31 Aligned_cols=60 Identities=22% Similarity=0.228 Sum_probs=51.8
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHH------------------hC---CChhhHhhhhhhhhhhh
Q 006699 380 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQ------------------TG---LSRSQVSNWFINARVRL 438 (635)
Q Consensus 380 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~q------------------TG---LS~~QVsNWFiNaRrRl 438 (635)
.+|+|..|++.++.+|+.+|.. +|||+..+|++||.. +| |++.||.+||+|+|++.
T Consensus 9 ~rr~Rt~ft~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 9 GRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp ----CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCcCcCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 3455566999999999999988 799999999999999 88 99999999999999998
Q ss_pred chhh
Q 006699 439 WKPM 442 (635)
Q Consensus 439 kKp~ 442 (635)
++..
T Consensus 86 k~k~ 89 (99)
T 1lfb_A 86 AFRH 89 (99)
T ss_dssp SCCC
T ss_pred HHhc
Confidence 7654
No 73
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.06 E-value=1.3e-10 Score=95.53 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 389 ERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 389 k~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
..++.+|+..|..+ ++||+..++..||+++||++.||.+||+|+|.|.|+.
T Consensus 9 ~~~~~~LE~~F~~~--~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAI--TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTT--CSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHc--CCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 45689999999543 7999999999999999999999999999999998764
No 74
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.91 E-value=7.9e-10 Score=113.23 Aligned_cols=53 Identities=23% Similarity=0.366 Sum_probs=49.6
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc
Q 006699 384 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW 439 (635)
Q Consensus 384 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlk 439 (635)
++.|.+.++..|+++|.. ||||+..+|.+||++|||++.||++||+|||+|.|
T Consensus 369 ~~~~~~~q~~~Le~~f~~---~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 369 AAAISPQARAFLEQVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HCSSCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhcchHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 456899999999999988 69999999999999999999999999999999975
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.91 E-value=1.2e-09 Score=108.79 Aligned_cols=57 Identities=21% Similarity=0.240 Sum_probs=51.3
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC---------------------CChhhHhhhhhhhhhhh
Q 006699 380 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTG---------------------LSRSQVSNWFINARVRL 438 (635)
Q Consensus 380 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTG---------------------LS~~QVsNWFiNaRrRl 438 (635)
.+|.|..|++.++.+|+.||.. +|||+..+|++||..++ ||+.||.|||+|+|++.
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~---~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 4455556999999999999998 79999999999999988 89999999999999975
Q ss_pred c
Q 006699 439 W 439 (635)
Q Consensus 439 k 439 (635)
.
T Consensus 219 ~ 219 (221)
T 2h8r_A 219 A 219 (221)
T ss_dssp C
T ss_pred h
Confidence 3
No 76
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.86 E-value=8.5e-10 Score=107.71 Aligned_cols=58 Identities=21% Similarity=0.218 Sum_probs=51.6
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC---------------------CChhhHhhhhhhhhhhh
Q 006699 380 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTG---------------------LSRSQVSNWFINARVRL 438 (635)
Q Consensus 380 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTG---------------------LS~~QVsNWFiNaRrRl 438 (635)
.+|+|..|++.++.+|+.+|.. +|||+..+|..||..++ ||+.||.+||+|+|++.
T Consensus 115 ~rr~R~~ft~~ql~~Le~~F~~---~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 115 GRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 3455666999999999999999 69999999999999999 99999999999999998
Q ss_pred ch
Q 006699 439 WK 440 (635)
Q Consensus 439 kK 440 (635)
+.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 64
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=5.9e-09 Score=87.34 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhh
Q 006699 389 ERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 437 (635)
Q Consensus 389 k~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrR 437 (635)
++++.+|++.|.. ||||+.+++..||..+||++..|+.||+|+|.+
T Consensus 14 k~ql~~Lk~yF~~---n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAM---NMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 6889999999999 799999999999999999999999999999974
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=96.20 E-value=0.00081 Score=49.96 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=17.3
Q ss_pred hhHhhhhhhhhhhhchhhHH
Q 006699 425 SQVSNWFINARVRLWKPMVE 444 (635)
Q Consensus 425 ~QVsNWFiNaRrRlkKp~ie 444 (635)
.||.+||+|+|+|.||...+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 48999999999999987654
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.73 E-value=0.065 Score=44.94 Aligned_cols=44 Identities=25% Similarity=0.397 Sum_probs=39.3
Q ss_pred CChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhh
Q 006699 387 LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFIN 433 (635)
Q Consensus 387 fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiN 433 (635)
.++...++|+++|.+| -...+++...|+.++.|+..||+.||.-
T Consensus 13 ~~p~~~e~L~~Yy~~h---k~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAH---QQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCCHHHHHHHHHT---CCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHh---cccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 3566678999999995 7889999999999999999999999964
No 80
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=72.81 E-value=3.9 Score=33.83 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=41.3
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006699 386 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 442 (635)
Q Consensus 386 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 442 (635)
.||+..+.+|.-.|.+ .| .-.++|+.+|++...|.++...+|+++++-+
T Consensus 37 ~L~~~~r~vl~l~~~~----g~----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYR----GW----STAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHHTS----CC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4899999999887765 33 3578999999999999999999999998754
No 81
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=71.80 E-value=4.9 Score=33.15 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=42.8
Q ss_pred CCChhHHHHHHHHHH----HccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHH
Q 006699 386 GLPERSVSVLRAWLF----EHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEE 445 (635)
Q Consensus 386 ~fpk~qv~iLr~Wf~----eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~iee 445 (635)
.||+..+.+|...|. + .+ .-.++|..+|+|...|.+|...+++++++.+.+.
T Consensus 18 ~L~~~er~vl~l~~~l~~~~----~~----s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~~ 73 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGK----PK----TLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSK 73 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSS----CC----CHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSH
T ss_pred hCCHHHHHHHHHHHccCCCC----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 489999999988775 3 33 3467999999999999999999999998876443
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=69.84 E-value=10 Score=32.83 Aligned_cols=50 Identities=26% Similarity=0.201 Sum_probs=38.3
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhh
Q 006699 382 RPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 437 (635)
Q Consensus 382 R~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrR 437 (635)
++|+.|+.+.+..+-.++.+ ++.++ ..++|+..|++...|.+|..+++..
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~---~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEE---NPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHH---CTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred CcceeCCHHHHHHHHHHHHH---CCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 35677999998777777765 46655 2368999999999999998766543
No 83
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=68.16 E-value=4.6 Score=31.97 Aligned_cols=50 Identities=18% Similarity=0.085 Sum_probs=40.6
Q ss_pred CCChhHHHHHHHHHH----HccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc-hhhH
Q 006699 386 GLPERSVSVLRAWLF----EHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW-KPMV 443 (635)
Q Consensus 386 ~fpk~qv~iLr~Wf~----eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlk-Kp~i 443 (635)
.||+....+|...|. + ++ .-.++|..+|+|...|.+|...++.+++ ..+.
T Consensus 10 ~L~~~er~il~l~~~l~~~~----~~----s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~ 64 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGR----EH----TLEEVGAYFGVTRERIRQIENKALRKLKYHESR 64 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSS----CC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred hCCHHHHHHHHHHHhcccCC----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhh
Confidence 489999999988775 3 33 2358999999999999999999999998 5543
No 84
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=66.31 E-value=8.4 Score=29.54 Aligned_cols=46 Identities=13% Similarity=0.147 Sum_probs=32.0
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhh
Q 006699 384 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFIN 433 (635)
Q Consensus 384 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiN 433 (635)
++.|+.+.+......+.. .++......++|+..|++...|.+|...
T Consensus 3 r~~ys~efK~~~~~~~~~----g~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN----DNDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH----CTTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHc----CCCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 456888887666555443 2221223679999999999999999654
No 85
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=63.78 E-value=7 Score=33.89 Aligned_cols=48 Identities=15% Similarity=0.129 Sum_probs=39.5
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006699 386 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 442 (635)
Q Consensus 386 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 442 (635)
.||+..+.++. .+.+ .| .-.++|+.+|+|...|.++...+|+++++.+
T Consensus 109 ~L~~~~r~v~~-~~~~----g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR----GY----SYREIATILSKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp HSCHHHHHHHH-HHTT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 48999999998 4444 44 3467999999999999999999999988754
No 86
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=63.73 E-value=9.2 Score=31.60 Aligned_cols=45 Identities=24% Similarity=0.333 Sum_probs=31.5
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhh
Q 006699 380 PWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFI 432 (635)
Q Consensus 380 ~kR~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFi 432 (635)
++++++.|+.+.+......+.. -+ -..++|+.+|+++..|.+|..
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~----g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHD----GE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHH----TC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHC----CC----CHHHHHHHHCcCHHHHHHHHH
Confidence 3445667998886544444433 22 256889999999999999964
No 87
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=63.04 E-value=6.9 Score=29.95 Aligned_cols=49 Identities=14% Similarity=-0.007 Sum_probs=39.6
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006699 386 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 442 (635)
Q Consensus 386 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 442 (635)
.||+....+|...|.+ .+ .-.++|..+|++...|.+|...+|.++++-+
T Consensus 15 ~L~~~~r~il~l~~~~----g~----s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 15 DLTTDQREALLLTQLL----GL----SYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp SSCHHHHHHHHHHHTS----CC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred hCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 4899999999887665 33 2468999999999999999999999987754
No 88
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=60.54 E-value=6 Score=30.85 Aligned_cols=50 Identities=24% Similarity=0.324 Sum_probs=40.8
Q ss_pred CCChhHHHHHHHHH----HHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 006699 386 GLPERSVSVLRAWL----FEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMV 443 (635)
Q Consensus 386 ~fpk~qv~iLr~Wf----~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~i 443 (635)
.||+..+.+|...+ .+ .+ .-.++|+.+|+|...|.++...+++++++.+.
T Consensus 5 ~L~~~er~il~l~~~l~~~~----g~----s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~ 58 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT----DY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 58 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS----CC----CHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCG
T ss_pred cCCHHHHHHHHHHHccCCCC----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 48999999998876 23 33 33679999999999999999999999987653
No 89
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=56.72 E-value=19 Score=31.19 Aligned_cols=59 Identities=22% Similarity=0.259 Sum_probs=45.2
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHHHH
Q 006699 386 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYL 448 (635)
Q Consensus 386 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~iee~~~ 448 (635)
.||+..+.++.-.|...-..++ .-.++|..+|+|...|.++...+++++++.+..+...
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~----s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~~l~ 77 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLR 77 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999887752100133 4578999999999999999999999999887655444
No 90
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=55.62 E-value=21 Score=27.48 Aligned_cols=54 Identities=19% Similarity=0.106 Sum_probs=42.4
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHH
Q 006699 383 PQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEE 445 (635)
Q Consensus 383 ~rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~iee 445 (635)
....|++....+|..+ .+ .+ .-.++|+.+|++...|..+....+.++......+
T Consensus 8 ~~~~L~~~e~~il~~~-~~----g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~ 61 (74)
T 1fse_A 8 SKPLLTKREREVFELL-VQ----DK----TTKEIASELFISEKTVRNHISNAMQKLGVKGRSQ 61 (74)
T ss_dssp CCCCCCHHHHHHHHHH-TT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHH
T ss_pred CCCCCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHH
Confidence 3456999999999774 33 34 3467999999999999999999999987665433
No 91
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=55.05 E-value=19 Score=31.56 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=41.7
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 006699 386 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMV 443 (635)
Q Consensus 386 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~i 443 (635)
.||+..+.++...+.+ .+ .-.++|..+|+|...|.+|...+|.++++.+.
T Consensus 22 ~L~~~~r~vl~l~y~~----g~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~ 71 (113)
T 1s7o_A 22 LLTDKQMNYIELYYAD----DY----SLAEIADEFGVSRQAVYDNIKRTEKILETYEM 71 (113)
T ss_dssp GSCHHHHHHHHHHHHT----CC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999887776 33 34789999999999999999999999877653
No 92
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=52.81 E-value=28 Score=23.95 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=29.6
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhh
Q 006699 385 RGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAR 435 (635)
Q Consensus 385 R~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaR 435 (635)
+.|+.+....+...+.+ .+ ...++|+.+|++...|..|....+
T Consensus 4 ~~l~~~~~~~i~~~~~~----g~----s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLL----NV----SLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CCCCHHHHHHHHHHHHT----TC----CHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CCCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHhhHH
Confidence 35777776444444443 33 256899999999999999986443
No 93
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=51.79 E-value=15 Score=29.92 Aligned_cols=53 Identities=15% Similarity=0.132 Sum_probs=42.4
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHHH
Q 006699 386 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMY 447 (635)
Q Consensus 386 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~iee~~ 447 (635)
.|++...++|.-+ .+ .+ .-.++|+.+|++...|.++..+++++++.....+..
T Consensus 21 ~Lt~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l~ 73 (82)
T 1je8_A 21 QLTPRERDILKLI-AQ----GL----PNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAA 73 (82)
T ss_dssp GSCHHHHHHHHHH-TT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred cCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 4899999999874 33 33 456899999999999999999999999876654443
No 94
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=49.83 E-value=11 Score=34.84 Aligned_cols=49 Identities=29% Similarity=0.285 Sum_probs=41.4
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006699 386 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 442 (635)
Q Consensus 386 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 442 (635)
.||+..+.+|.-.|.+ .+ .-.++|+.+|+|...|..+...+|.++++.+
T Consensus 187 ~L~~~~r~vl~l~~~~----g~----s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE----EL----PAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp TSCHHHHHHHHHHHTS----CC----CHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc----CC----CHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 4899999999887765 44 3467999999999999999999999998754
No 95
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=49.57 E-value=13 Score=29.20 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=40.9
Q ss_pred CChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHHH
Q 006699 387 LPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMY 447 (635)
Q Consensus 387 fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~iee~~ 447 (635)
||+....+|.-+ .+ .+ .-.++|..+|++...|.++...++.+++.....+..
T Consensus 17 L~~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~~~l~ 68 (79)
T 1x3u_A 17 LSERERQVLSAV-VA----GL----PNKSIAYDLDISPRTVEVHRANVMAKMKAKSLPHLV 68 (79)
T ss_dssp HCHHHHHHHHHH-TT----TC----CHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred CCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 788888888764 33 33 235899999999999999999999999876655443
No 96
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=47.29 E-value=16 Score=32.94 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=40.2
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006699 386 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 442 (635)
Q Consensus 386 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 442 (635)
.||+..+.+|.-.+.+ .++ -.++|+.+|++...|.++...+|+++++.+
T Consensus 140 ~L~~~~r~vl~l~~~~----g~s----~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 140 SLPEDLRMAITLRELD----GLS----YEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp HSCHHHHHHHHHHHTT----CCC----HHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHHc----CCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 3889999999877665 332 367999999999999999999999988754
No 97
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=46.41 E-value=24 Score=30.74 Aligned_cols=51 Identities=16% Similarity=0.094 Sum_probs=42.1
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHH
Q 006699 386 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVE 444 (635)
Q Consensus 386 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ie 444 (635)
.||+..+.++.-.+.+ .+ .-.++|..+|+|..-|.++...+|.++++-+.+
T Consensus 25 ~L~~~~r~vl~l~~~~----g~----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~ 75 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLE----DY----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKK 75 (113)
T ss_dssp GSCHHHHHHHHHHHTS----CC----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999887665 33 347899999999999999999999999876533
No 98
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=43.19 E-value=51 Score=28.19 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=42.0
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHH
Q 006699 384 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEM 446 (635)
Q Consensus 384 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~iee~ 446 (635)
...||+..+++|.-++ + .+ .-.++|+.+|++...|.++..+.++|+.-....++
T Consensus 32 ~~~Lt~re~~Vl~l~~-~----G~----s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~r~el 85 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA-E----GF----LVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIAL 85 (99)
T ss_dssp SSSCCHHHHHHHHHHH-H----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred cCCCCHHHHHHHHHHH-c----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHH
Confidence 4569999999997654 4 22 23789999999999999999999999865544333
No 99
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=42.52 E-value=38 Score=27.79 Aligned_cols=52 Identities=17% Similarity=0.145 Sum_probs=40.8
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHH
Q 006699 386 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEM 446 (635)
Q Consensus 386 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~iee~ 446 (635)
.||+..+.+|.-+ .+ .|.. .++|+.+|++...|.++..++|++++.....++
T Consensus 29 ~Lt~~e~~vl~l~-~~----g~s~----~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~l 80 (91)
T 2rnj_A 29 MLTEREMEILLLI-AK----GYSN----QEIASASHITIKTVKTHVSNILSKLEVQDRTQA 80 (91)
T ss_dssp GCCSHHHHHHHHH-HT----TCCT----THHHHHHTCCHHHHHHHHHHHHHHTTCCSSHHH
T ss_pred cCCHHHHHHHHHH-Hc----CCCH----HHHHHHHCcCHHHHHHHHHHHHHHHCCCCHHHH
Confidence 4899999999774 44 3322 478999999999999999999999977654443
No 100
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=39.65 E-value=32 Score=31.02 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=37.8
Q ss_pred CCCCCCCCChhHHHHHHHHH-HHccCCCCCCHHHHHHHHH-Hh--CCChhhHhhhhhhh
Q 006699 380 PWRPQRGLPERSVSVLRAWL-FEHFLHPYPSDVDKHILAR-QT--GLSRSQVSNWFINA 434 (635)
Q Consensus 380 ~kR~rR~fpk~qv~iLr~Wf-~eH~~nPYPS~~EK~~LA~-qT--GLS~~QVsNWFiNa 434 (635)
++++|+.|+-+++..+..|+ .+ ||-.+..+....|. +. +++...|+.|..|+
T Consensus 5 ~~~~R~~lT~~qK~~i~~~~~~~---~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 5 GKIKRRAITEHEKRALRHYFFQL---QNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCCSSSCCCSHHHHHHHHHHHSS---SSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCCcCccCCHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 46777889999999999998 45 57666444333222 66 78999999998663
No 101
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=39.27 E-value=29 Score=28.99 Aligned_cols=49 Identities=18% Similarity=0.192 Sum_probs=39.7
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006699 385 RGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 442 (635)
Q Consensus 385 R~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 442 (635)
..|++..+++|.-. .+ .+ .-.++|+.+|++...|.++..++|+|++...
T Consensus 26 ~~Lt~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 74 (95)
T 3c57_A 26 SGLTDQERTLLGLL-SE----GL----TNKQIADRMFLAEKTVKNYVSRLLAKLGMER 74 (95)
T ss_dssp -CCCHHHHHHHHHH-HT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred hcCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 35999999999886 43 33 3378999999999999999999999987654
No 102
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=36.66 E-value=12 Score=33.52 Aligned_cols=48 Identities=25% Similarity=0.268 Sum_probs=39.7
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchh
Q 006699 386 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKP 441 (635)
Q Consensus 386 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp 441 (635)
.||+..+.+|.-.+.+. .+| .++|+.+|+|...|.++...+|+++++.
T Consensus 135 ~L~~~~r~vl~l~~~~g--~s~------~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 135 RLPEAQRALIERAFFGD--LTH------RELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp TSCHHHHHHHHHHHHSC--CSS------CCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC--CCH------HHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 38999999998877763 233 4689999999999999999999998763
No 103
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=33.37 E-value=59 Score=26.82 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhh
Q 006699 391 SVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINA 434 (635)
Q Consensus 391 qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNa 434 (635)
.++.+..|+.+|+..|-++ ..+||+.+|+++..+...|.-.
T Consensus 3 ~~~~i~~~i~~~~~~~~~~---~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFT---LSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCC---HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCC---HHHHHHHHCcCHHHHHHHHHHH
Confidence 4667888999987775455 4568999999999999988765
No 104
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=33.37 E-value=24 Score=24.88 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=28.1
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhh
Q 006699 386 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINA 434 (635)
Q Consensus 386 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNa 434 (635)
.++.+....+...+.+ .. ...++|+.+|++..-|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~----g~----s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEK----GH----PRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHT----TC----CHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHc----CC----CHHHHHHHHCCCHHHHHHHHHHc
Confidence 4666555544444443 22 35689999999999999998643
No 105
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=31.18 E-value=51 Score=35.65 Aligned_cols=54 Identities=17% Similarity=-0.008 Sum_probs=41.9
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc-hhhH
Q 006699 386 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW-KPMV 443 (635)
Q Consensus 386 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlk-Kp~i 443 (635)
.||+..+.||...|.-.-..++ .-.++|..+|+|...|+.+...+++|++ .++.
T Consensus 375 ~L~ereR~VI~LRygL~~~e~~----TleEIAe~LgIS~erVRqi~~RAlkKLR~~~~~ 429 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDGREH----TLEEVGAYFGVTRERIRQIENKALRKLKYHESR 429 (438)
T ss_pred hCCHHHHHHHHHHHhccCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHhHhh
Confidence 4899999999877651000133 5678999999999999999999999999 5543
No 106
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=30.42 E-value=97 Score=25.84 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=31.4
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCH-HHHHHHHHHhCCChhhHhhhhhh
Q 006699 384 QRGLPERSVSVLRAWLFEHFLHPYPSD-VDKHILARQTGLSRSQVSNWFIN 433 (635)
Q Consensus 384 rR~fpk~qv~iLr~Wf~eH~~nPYPS~-~EK~~LA~qTGLS~~QVsNWFiN 433 (635)
++.|+.+.+...-..+.++- .-|++. .....+|+.+|++...|.+|..-
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~-~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQ-GEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcc-cccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 45688888654444433310 002232 35678999999999999999653
No 107
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=29.67 E-value=1.3e+02 Score=27.63 Aligned_cols=69 Identities=12% Similarity=0.172 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccccccCCCCCccCchhhhHHHhhhcccchhhhHH
Q 006699 260 LEFMELQKRKTKLLSMLEEVDRRYRHY---CDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVG 330 (635)
Q Consensus 260 le~~elQ~kK~kLL~mLEEVd~ry~qY---c~qmq~v~ssFe~vaG~gaa~~Ytalal~~mSrhfr~LrdaI~~ 330 (635)
.++++|+.+=.....-|.+.+.++++- +.++...+.++.. .|. ...|||.+....+.+....++.-|..
T Consensus 45 eEI~~L~~~He~F~~~L~~a~~e~~~i~~i~~el~~~~~~~~~-~~~-~~npYT~it~~~l~~~W~~l~~li~~ 116 (129)
T 1wlx_A 45 EEIEGLISAHDQFKSTLPDADREREAILAIHKEAQRIAESNHI-KLS-GSNPYTTVTPQIINSKWEKVQQLVPK 116 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CCS-SSCSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCc-CCC-CCCCCccchHHHHHHHHHHHHHHHHH
Confidence 356777777777777788888887766 5777777788883 232 25599999888888887777766643
No 108
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=29.28 E-value=58 Score=31.56 Aligned_cols=54 Identities=20% Similarity=0.064 Sum_probs=43.9
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHHH
Q 006699 385 RGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMY 447 (635)
Q Consensus 385 R~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~iee~~ 447 (635)
..||+..+.+|.-. .+ .+ .-.++|+.+|++..-|.+...++|++++.....++.
T Consensus 196 ~~L~~~erevl~L~-~~----G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~~~~~~ 249 (258)
T 3clo_A 196 NILSEREKEILRCI-RK----GL----SSKEIAATLYISVNTVNRHRQNILEKLSVGNSIEAC 249 (258)
T ss_dssp TSSCHHHHHHHHHH-HT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred ccCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 46999999999886 44 33 346799999999999999999999999887654443
No 109
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=29.17 E-value=61 Score=26.64 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=30.5
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhh
Q 006699 384 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINAR 435 (635)
Q Consensus 384 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaR 435 (635)
++.|+.+.+...-..+... .. .....+|+.+|++...|.+|....+
T Consensus 3 r~~ys~e~k~~~v~~~~~~--~g----~s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENS--DG----ASLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTG--GG----SCHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHc--CC----ChHHHHHHHHCcCHHHHHHHHHHHh
Confidence 3568888765444443320 01 1367899999999999999975443
No 110
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=27.62 E-value=51 Score=24.49 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhHHHH
Q 006699 391 SVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEM 446 (635)
Q Consensus 391 qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~iee~ 446 (635)
..++|.- +.+ .++. .++|+.+|++...|.++..+.+.++......+.
T Consensus 3 e~~vl~l-~~~----g~s~----~eIA~~l~is~~tV~~~~~~~~~kl~~~~~~~l 49 (61)
T 2jpc_A 3 ERQVLKL-IDE----GYTN----HGISEKLHISIKTVETHRMNMMRKLQVHKVTEL 49 (61)
T ss_dssp HHHHHHH-HHT----SCCS----HHHHHHTCSCHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred HHHHHHH-HHc----CCCH----HHHHHHhCCCHHHHHHHHHHHHHHHCCCCHHHH
Confidence 4556655 444 3333 589999999999999999999999877654443
No 111
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=27.24 E-value=13 Score=34.23 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc
Q 006699 386 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW 439 (635)
Q Consensus 386 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlk 439 (635)
.||+..+.+|.-.+.+ .+ .-.++|+.+|+|...|.++...+|++++
T Consensus 198 ~L~~~~r~vl~l~~~~----g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 198 ELDERERLIVYLRYYK----DQ----TQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp ------------------------------------------------------
T ss_pred hCCHHHHHHHHHHHhc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 4888899998876655 22 3468999999999999999999998864
No 112
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=26.72 E-value=61 Score=25.85 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=21.9
Q ss_pred HHHHHHHhCCChhhHhhhhhhhhhhh
Q 006699 413 KHILARQTGLSRSQVSNWFINARVRL 438 (635)
Q Consensus 413 K~~LA~qTGLS~~QVsNWFiNaRrRl 438 (635)
..+||+.+|++...|++|..+.+.+.
T Consensus 34 q~elA~~~gis~~~is~~e~g~~~~~ 59 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKIDLF 59 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCGGGC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCCC
Confidence 46899999999999999998876433
No 113
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=24.43 E-value=57 Score=24.94 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 006699 413 KHILARQTGLSRSQVSNWFINAR 435 (635)
Q Consensus 413 K~~LA~qTGLS~~QVsNWFiNaR 435 (635)
..+||+.+|++...|+.|..+.+
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998876
No 114
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=24.18 E-value=37 Score=24.98 Aligned_cols=23 Identities=22% Similarity=0.115 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 006699 413 KHILARQTGLSRSQVSNWFINAR 435 (635)
Q Consensus 413 K~~LA~qTGLS~~QVsNWFiNaR 435 (635)
..+||+.+|++...|+.|..+.+
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998764
No 115
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=23.74 E-value=39 Score=25.04 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.4
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 006699 413 KHILARQTGLSRSQVSNWFINAR 435 (635)
Q Consensus 413 K~~LA~qTGLS~~QVsNWFiNaR 435 (635)
..+||+.+|+++..|++|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 56799999999999999998754
No 116
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=22.81 E-value=40 Score=25.28 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=21.5
Q ss_pred HHHHHHHhCCChhhHhhhhhhhhh
Q 006699 413 KHILARQTGLSRSQVSNWFINARV 436 (635)
Q Consensus 413 K~~LA~qTGLS~~QVsNWFiNaRr 436 (635)
..+||+.+|++...|+.|..+.+.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 467999999999999999998765
No 117
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=22.72 E-value=43 Score=26.33 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.8
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 006699 413 KHILARQTGLSRSQVSNWFINAR 435 (635)
Q Consensus 413 K~~LA~qTGLS~~QVsNWFiNaR 435 (635)
..+||+.+|++...|++|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 47899999999999999998866
No 118
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=22.45 E-value=1.2e+02 Score=25.32 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=39.9
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhhH
Q 006699 384 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMV 443 (635)
Q Consensus 384 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~i 443 (635)
...|++..+++|+-.. + .| .-.++|+.+|++...|.+...+.++|+.-...
T Consensus 27 ~~~Lt~rE~~Vl~l~~-~----G~----s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~~r 77 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE-K----GF----TNQEIADALHLSKRSIEYSLTSIFNKLNVGSR 77 (90)
T ss_dssp --CCCHHHHHHHHHHH-T----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSH
T ss_pred ccCCCHHHHHHHHHHH-c----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCCCH
Confidence 3469999999997665 4 33 35789999999999999999999998865443
No 119
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=22.34 E-value=2e+02 Score=24.46 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=37.9
Q ss_pred CCCCCCCCChhHHHHHHHHHHHccC--CCCCCHHHHH----HHHHHhCCChhhH-hhhhhhhhhhh
Q 006699 380 PWRPQRGLPERSVSVLRAWLFEHFL--HPYPSDVDKH----ILARQTGLSRSQV-SNWFINARVRL 438 (635)
Q Consensus 380 ~kR~rR~fpk~qv~iLr~Wf~eH~~--nPYPS~~EK~----~LA~qTGLS~~QV-sNWFiNaRrRl 438 (635)
.+|.++.+.++.-..|-.|+.+... -| |+..... .|+...|++.-.+ .+|+.+-.+|.
T Consensus 66 ~kr~r~~~~~~~E~~L~~Wi~~~~~~g~p-vs~~~I~~kA~~i~~~~g~~~f~~S~gWl~~F~~Rh 130 (131)
T 1hlv_A 66 RKTNKLSPYDKLEGLLIAWFQQIRAAGLP-VKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRR 130 (131)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHHGGGTCC-CCHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHT
T ss_pred hcccCCCCCHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhc
Confidence 3445556788889999999987543 34 6665544 4566667764344 47888776664
No 120
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=22.23 E-value=61 Score=25.66 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChhhHhhhhhhhhhhhc
Q 006699 413 KHILARQTGLSRSQVSNWFINARVRLW 439 (635)
Q Consensus 413 K~~LA~qTGLS~~QVsNWFiNaRrRlk 439 (635)
..+||+.+|++...|+.|-.+.++...
T Consensus 26 q~elA~~~gis~~~is~~E~G~~~~p~ 52 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERNLQTNPS 52 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSCCCCB
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCCCC
Confidence 456888888888888888877333333
No 121
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=22.18 E-value=2e+02 Score=25.46 Aligned_cols=50 Identities=12% Similarity=0.006 Sum_probs=31.8
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHH-HHHH------hCCChhhHhhhhhhhhh
Q 006699 384 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHI-LARQ------TGLSRSQVSNWFINARV 436 (635)
Q Consensus 384 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~-LA~q------TGLS~~QVsNWFiNaRr 436 (635)
++.++.+....+.+++.+ +|--+..+... |... ..++...|..|+...+.
T Consensus 81 ~~~~~~~~~~~I~~~~~~---~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~ 137 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQ---NPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQ 137 (159)
T ss_dssp CCCCCTTHHHHHHHHHHH---CSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHH---CccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhC
Confidence 456788888888888877 46556554333 3222 14788888888765443
No 122
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=21.43 E-value=51 Score=35.08 Aligned_cols=53 Identities=17% Similarity=-0.000 Sum_probs=39.3
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhc-hhh
Q 006699 386 GLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLW-KPM 442 (635)
Q Consensus 386 ~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlk-Kp~ 442 (635)
.||+..+.||...|.-.-..+ -.-.++|..+|+|+..|+.+...+++|++ .+.
T Consensus 360 ~L~~rer~Vl~lr~~L~~~e~----~Tl~EIA~~lgiS~erVrqi~~rAl~kLR~~~~ 413 (423)
T 2a6h_F 360 KLSEREAMVLKLRKGLIDGRE----HTLEEVGAFFGVTRERIRQIENKALRKLKYHES 413 (423)
T ss_dssp SSCHHHHHHHHHHHHTTCC---------CHHHHSSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhccCCCCC----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHhhhh
Confidence 489999999987775100013 35678999999999999999999999998 443
No 123
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=20.91 E-value=68 Score=30.49 Aligned_cols=50 Identities=22% Similarity=0.309 Sum_probs=39.9
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhHhhhhhhhhhhhchhh
Q 006699 384 QRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM 442 (635)
Q Consensus 384 rR~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGLS~~QVsNWFiNaRrRlkKp~ 442 (635)
...|++..+++|+ |+.+ .+ .-.++|+.+|++..-|++...|+|+|+.-..
T Consensus 173 ~~~Lt~~e~~vl~-~~~~----g~----s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~ 222 (236)
T 2q0o_A 173 KQMLSPREMLCLV-WASK----GK----TASVTANLTGINARTVQHYLDKARAKLDAES 222 (236)
T ss_dssp GGSCCHHHHHHHH-HHHT----TC----CHHHHHHHHCCCHHHHHHHHHHHHHHHTCSS
T ss_pred cCCCCHHHHHHHH-HHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHhCCCC
Confidence 4469999999994 4554 33 3367899999999999999999999986544
No 124
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=20.81 E-value=47 Score=25.21 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=20.7
Q ss_pred HHHHHHHhCCChhhHhhhhhhhhh
Q 006699 413 KHILARQTGLSRSQVSNWFINARV 436 (635)
Q Consensus 413 K~~LA~qTGLS~~QVsNWFiNaRr 436 (635)
..+||+.+|++...|++|..+.+.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 568999999999999999987543
No 125
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=20.68 E-value=49 Score=25.21 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.5
Q ss_pred HHHHHHHhCCChhhHhhhhhhhh
Q 006699 413 KHILARQTGLSRSQVSNWFINAR 435 (635)
Q Consensus 413 K~~LA~qTGLS~~QVsNWFiNaR 435 (635)
..+||+.+|+++..|..|..+.+
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46899999999999999998765
No 126
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=20.15 E-value=1.6e+02 Score=24.20 Aligned_cols=46 Identities=13% Similarity=0.005 Sum_probs=29.0
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCC-------ChhhHhhhhhh
Q 006699 385 RGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGL-------SRSQVSNWFIN 433 (635)
Q Consensus 385 R~fpk~qv~iLr~Wf~eH~~nPYPS~~EK~~LA~qTGL-------S~~QVsNWFiN 433 (635)
+.++++....+.+++.+ +|.-+..+........|+ +...|.+|+..
T Consensus 74 ~~l~~~~~~~i~~~~~~---~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 74 RIATPEIENRIEEYKRS---SPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp CSSCSTHHHHHHHTTTT---CTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred CcCCHHHHHHHHHHHHh---CcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 45788777777777765 566665554333333374 88899988753
Done!