BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006700
(635 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PAX2|ATD3B_XENLA ATPase family AAA domain-containing protein 3-B OS=Xenopus laevis
GN=atad3-b PE=2 SV=1
Length = 593
Score = 357 bits (916), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 222/569 (39%), Positives = 323/569 (56%), Gaps = 39/569 (6%)
Query: 69 SGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVER 128
S FDP LERAAKA RE + SRHA+EA ++ + QE+T E + YEA Q+ E+
Sbjct: 44 SNFDPTGLERAAKAARELDQSRHAKEALNLAKVQEETLQMEQQAKIKEYEAAVEQIKNEQ 103
Query: 129 QRKLAEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSI 185
R +EE R + ++ QARAQ +D+LAR+R + Q+ N E ++ QEES
Sbjct: 104 IRVQSEEKRKTLNEETKQHQARAQ---YQDKLARQRYEDQLRQQQLQNEENLRRQEESVQ 160
Query: 186 RKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIE 245
++E R++T E E+ + ++ AEA RA + D R +
Sbjct: 161 KQEAMRKATVEH-----------EMELRHKNDMLRIEAEAHARAKVERENADIIREQIRL 209
Query: 246 RINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWG 305
+ R+ L +I T + EG R+ ++D +K+ TV G T LA G+YT + G V
Sbjct: 210 KAAEHRQTVLESIKTAGTVFGEGFRTFISDWDKVTATVAGLTLLAVGVYTAKNGTGVAGR 269
Query: 306 YVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPS 365
Y+ LG+PSL+R++S + ++K I +K G +IL P
Sbjct: 270 YIEARLGKPSLVRDTSRITVVEAIKHPIKISKRIFSKIQDALEG----------VILSPR 319
Query: 366 LQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425
L+ R++ +A AT NTK ++ +RN+L YGPPGTGKT+ A+++A S +DYA+MTGGDVAP
Sbjct: 320 LEERVRDIAIATRNTKANKGLYRNILMYGPPGTGKTLFAKKLAMHSSMDYAIMTGGDVAP 379
Query: 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQ 485
+G + VT +H++FDWA SK+GLLLF+DEADAFL +R++ +SE R+ LNA L+RTG+Q
Sbjct: 380 MGREGVTAMHKVFDWAGTSKRGLLLFVDEADAFLRKRSTEKISEDLRATLNAFLYRTGEQ 439
Query: 486 SRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSL 545
S +LVLA+N+P D AI DRIDE++ F LP EER +L++LY KY+ +
Sbjct: 440 SNKFMLVLASNQPEQFDWAINDRIDEIVHFDLPGLEERERLVRLYFDKYVLQPASEG--- 496
Query: 546 KWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQ 605
KQ+ K+ D E A TEG SGREI+KL + QAA YA D +L
Sbjct: 497 -------KQRLKVAQFDYGKKC-SELATLTEGMSGREISKLGVAWQAAAYASEDGILTEA 548
Query: 606 LFREVVEYKVEEHHQRIK-LAAEGSQPTK 633
+ V + +H Q+++ L AEG + TK
Sbjct: 549 MIDARVADAIRQHQQKMEWLKAEGKESTK 577
>sp|Q6NVR9|ATAD3_XENTR ATPase family AAA domain-containing protein 3 OS=Xenopus tropicalis
GN=atad3 PE=2 SV=1
Length = 594
Score = 356 bits (913), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 226/583 (38%), Positives = 332/583 (56%), Gaps = 73/583 (12%)
Query: 69 SGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVER 128
S FDP LERAAKA RE + SRHA+EA ++ + QE+T E + YEA Q+ E+
Sbjct: 44 SNFDPTGLERAAKAARELDQSRHAKEALNLAKVQEETLQLEQQSKIKEYEAAVEQLKNEQ 103
Query: 129 QRKLAEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSI 185
R AEE R + ++ QARAQ +D+LAR+R + Q+ N E ++ QEES
Sbjct: 104 IRVQAEERRKTLNEETKQHQARAQ---YQDKLARQRYEDQLRQQQLQNEENLRRQEESVQ 160
Query: 186 RKEQARRSTEE------------QIQAQQRL---TEKERAEIERETIRVKAMAEAEGRAH 230
++E R++T E +I+A+ R E+E A+I RE IR+KA
Sbjct: 161 KQEAMRKATVEHEMELRHKNEMLRIEAEARARAKVERENADIIRENIRLKAA-------- 212
Query: 231 EAKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALA 290
+H R+ L +I T + EG R+ ++D +K+ TV G + LA
Sbjct: 213 ------EH------------RQTVLESIKTAGTVFGEGFRAFISDWDKVTATVAGLSLLA 254
Query: 291 AGIYTTREGARVTWGYVNRILGQPSLIRESSIGKFPWSGLLSQA--MNKVIRNKTSAGTA 348
GIYT + V Y+ LG+PSL+R++S +F + + ++K + +K
Sbjct: 255 VGIYTAKNATGVAGRYIEARLGKPSLVRDTS--RFTVAEAVKHPVKISKRLLSKIQDALE 312
Query: 349 GPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIA 408
G +IL P L+ R++ +A AT NTK ++ +RN+L YGPPGTGKT+ A+++A
Sbjct: 313 G----------VILSPKLEERVRDIAIATRNTKANKGLYRNILMYGPPGTGKTLFAKKLA 362
Query: 409 RKSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMS 468
SG+DYA+MTGGDVAP+G + VT +H++FDWA SK+GLLLF+DEADAFL +R++ +S
Sbjct: 363 MHSGMDYAIMTGGDVAPMGREGVTAMHKVFDWAGTSKRGLLLFVDEADAFLRKRSTEKIS 422
Query: 469 EAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLK 528
E R+ LNA L+RTG+QS +LVLA+N+P D AI DRIDE++ F LP EER +L++
Sbjct: 423 EDLRATLNAFLYRTGEQSNKFMLVLASNQPEQFDWAINDRIDEIVHFDLPGLEERERLVR 482
Query: 529 LYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMA 588
LY KY+ + KQ+ K+ D + A+ TEG SGREI+KL
Sbjct: 483 LYFDKYVLQPASEG----------KQRLKVAQFDYGKKC-SDLAQLTEGMSGREISKLGV 531
Query: 589 SVQAAVYARPDCVLDSQLFREVVEYKVEEHHQRIK-LAAEGSQ 630
+ QAA YA D +L+ + V + +H Q+++ L AEG +
Sbjct: 532 AWQAAAYASEDGILNEAMIDARVADAIRQHQQKMEWLKAEGKE 574
>sp|Q58E76|ATD3A_XENLA ATPase family AAA domain-containing protein 3-A OS=Xenopus laevis
GN=atad3-a PE=2 SV=1
Length = 593
Score = 355 bits (911), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 226/584 (38%), Positives = 327/584 (55%), Gaps = 69/584 (11%)
Query: 69 SGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVER 128
S FDP LERAAKA RE + SRHA+EA ++ + QE+T E + YEA Q+ E+
Sbjct: 44 SNFDPTGLERAAKAARELDQSRHAKEAINLAKVQEETLQMEQQAKIKEYEAAVEQLKNEQ 103
Query: 129 QRKLAEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSI 185
R AEE R + ++ QARAQ +D+LAR+R + Q+ N E ++ QE+S
Sbjct: 104 IRVQAEERRKTLNEETKQHQARAQ---YQDKLARQRYEDQLRQQQLQNEENLRRQEDSVQ 160
Query: 186 RKEQARRSTEE------------QIQAQQRL---TEKERAEIERETIRVKAMAEAEGRAH 230
++E RR+T E +I+A+ R E+E A+I RE IR+KA
Sbjct: 161 KQEAMRRATVEHEMELRHKNEMLRIEAEARAQAKVERENADIIREQIRLKAA-------- 212
Query: 231 EAKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALA 290
+H R+ L +I T + EG R+ ++D +K+ TV G T LA
Sbjct: 213 ------EH------------RQTVLESIKTAGTVFGEGFRTFISDWDKVTATVAGLTLLA 254
Query: 291 AGIYTTREGARVTWGYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGP 350
G+YT + V Y+ LG+PSL+R++S + + K + +K G
Sbjct: 255 VGVYTAKNATGVAGRYIEARLGKPSLVRDTSRITVAEAVKHPIKITKRLYSKIQDALEG- 313
Query: 351 VEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARK 410
+IL P L+ R++ +A AT NTK ++ +RN+L YGPPGTGKT+ A+++A
Sbjct: 314 ---------VILSPRLEERVRDIAIATRNTKANKGLYRNILMYGPPGTGKTLFAKKLAMH 364
Query: 411 SGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEA 470
SG+DYA+MTGGDVAP+G + VT +H++FDWA SK+GLLLF+DEADAFL +R++ +SE
Sbjct: 365 SGMDYAIMTGGDVAPMGREGVTAMHKVFDWAGTSKRGLLLFVDEADAFLRKRSTEKISED 424
Query: 471 QRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLY 530
R+ LNA L+RTG+QS +LVLA+N+P D AI DRIDE++ F LP EER +L++LY
Sbjct: 425 LRATLNAFLYRTGEQSNKFMLVLASNQPEQFDWAINDRIDEIVHFDLPGLEERERLVRLY 484
Query: 531 LKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASV 590
KY+ + KQ+ K+ D E ++ TEG SGREI+KL +
Sbjct: 485 FDKYVLQPASEG----------KQRLKVAQFDYGKKC-SELSKLTEGMSGREISKLGVAW 533
Query: 591 QAAVYARPDCVLDSQLFREVVEYKVEEHHQRIK-LAAEGSQPTK 633
QAA YA D +L + V + +H Q++ L AEG + K
Sbjct: 534 QAAAYASEDGILTEAMIDARVADAIRQHQQKMAWLKAEGKEGAK 577
>sp|A7YWC4|ATAD3_BOVIN ATPase family AAA domain-containing protein 3 OS=Bos taurus
GN=ATAD3 PE=2 SV=1
Length = 586
Score = 347 bits (889), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 223/569 (39%), Positives = 327/569 (57%), Gaps = 43/569 (7%)
Query: 69 SGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVER 128
S FDP LERAAKA RE SRHA+EA + + QEQT E + YEA Q+ ++
Sbjct: 47 SNFDPTGLERAAKAARELEHSRHAKEALSLAQMQEQTLQLEHQAKLKEYEAAVEQLKGDQ 106
Query: 129 QRKLAEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSI 185
R AEE R + ++ QARAQ +D+LAR+R + + Q+ N E ++ QEES
Sbjct: 107 IRVQAEERRKTLSEETRQHQARAQ---YQDKLARQRYEDQLKQQQLLNEENLRKQEESVQ 163
Query: 186 RKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIE 245
++E RR+T E+ + E R E E A+ + +L +R+ ++E
Sbjct: 164 KQEALRRATVEREMELRHKNEMLRVEAEARARAKAERENADIIREQIRLKAAEHRQTILE 223
Query: 246 RINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWG 305
+I T + EG R+ +TD +K+ TV G T LA GIY+ + V
Sbjct: 224 -----------SIRTAGTLFGEGFRAFVTDWDKVTATVAGLTLLAVGIYSAKNATSVAGR 272
Query: 306 YVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPS 365
Y+ LG+PSL+RE+S + +A+ I+ + P +A++ ++L PS
Sbjct: 273 YIEARLGKPSLVRETS------RITVLEALRHPIQVSRRL-LSKPQDALEG---VVLSPS 322
Query: 366 LQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425
L+ R++ +A AT NTK +++ +RN+L YGPPGTGKT+ A+++A SG+DYA+MTGGDVAP
Sbjct: 323 LEARVRDIAIATRNTKKNKSLYRNVLMYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAP 382
Query: 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQ 485
+G VT +H++FDWA S++GLLLF+DEADAFL +R + +SE R+ LNA L RTG
Sbjct: 383 MGRDGVTAMHKVFDWASTSRRGLLLFVDEADAFLRKRATEKISEDLRATLNAFLHRTGQH 442
Query: 486 SRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLC--SDEGDSS 543
S +LVLA+N+P D AI DRIDE++ F LP+ EER +L+++Y KY+ + EG
Sbjct: 443 SSKFMLVLASNQPEQFDWAINDRIDEMVSFELPQREERERLVRMYFDKYVLKPATEG--- 499
Query: 544 SLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLD 603
KQ+ K+ D E A+ TEG SGREI++L + QA YA D VL
Sbjct: 500 ---------KQRLKLAQFDYGKKC-SEIAQLTEGMSGREISQLAVAWQAMAYASEDGVLT 549
Query: 604 SQLFREVVEYKVEEHHQRIK-LAAEGSQP 631
+ V+ +++H Q+++ L AEGSQP
Sbjct: 550 EAMMDARVQDAIQQHRQKMQWLKAEGSQP 578
>sp|Q20748|ATAD3_CAEEL ATPase family AAA domain-containing protein 3 OS=Caenorhabditis
elegans GN=atad-3 PE=3 SV=2
Length = 595
Score = 340 bits (873), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 216/562 (38%), Positives = 320/562 (56%), Gaps = 53/562 (9%)
Query: 71 FDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQR 130
FD ALERAAKA R+ +A+EA ++ R QE TR E++ E EA + + E R
Sbjct: 47 FDSTALERAAKAARDLEKFPNAKEALELSRMQEVTRQKEVENETKKIEAQLANMKSEHIR 106
Query: 131 KLAEEHRNLVQQKAQARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQA 190
EE R + ++ + +D+LARKR + + + R E ++ QEES ++EQ
Sbjct: 107 VAEEERRKTLGEETKHAHSRAEYQDQLARKRAEEELAMKARMQEESLRKQEESVKKQEQL 166
Query: 191 RRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGR---AHEAKLTEDHNRRMLIERI 247
R+ T E A + E E+ + E R +A A + R + KL E+ NR+ +IE+I
Sbjct: 167 RKQTIEHELALKHKYELEKIDAE---TRARAKAARDNRDVNLEQMKLHEEENRKTVIEKI 223
Query: 248 NGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYV 307
T+ I G+ L D+ K+ VGG TALA G YT + G VT Y+
Sbjct: 224 K-----------TSGELIGSGLNQFLNDKTKIAAAVGGLTALAVGWYTAKRGTGVTARYI 272
Query: 308 NRILGQPSLIRESS------IGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDII 361
LG+PSL+RE+S + K P + Q M + ++ P+ NG ++
Sbjct: 273 ESRLGKPSLVRETSRITPLEVLKHPIKSV--QMMTRQKKD--------PL-----NG-VV 316
Query: 362 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGG 421
L P+L+RR++ +A T+NTK + FRN++FYGPPGTGKT+ A+ +A+ SGLDYA++TGG
Sbjct: 317 LPPALERRLRDIAITTSNTKRNNGLFRNVMFYGPPGTGKTLFAKSLAQHSGLDYAVLTGG 376
Query: 422 DVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFR 481
D+APLG V+ IH++FDWA KS+KGL++FIDEADAFL +R+ MSE R+ALNA LFR
Sbjct: 377 DIAPLGRDGVSAIHKVFDWASKSRKGLIVFIDEADAFLQKRSKNGMSEDTRAALNAFLFR 436
Query: 482 TGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGD 541
TG+QSR +LV+A+N+P D A+ DR D+++EF LP EER ++L Y +++ +
Sbjct: 437 TGEQSRKFMLVVASNQPEQFDWAVNDRFDQLVEFTLPGMEERERILLQYFNEHIVTPATS 496
Query: 542 SSSLKWGHLFKKQQQKITIKDLSDNV--IQEAARKTEGFSGREIAKLMASVQAAVYARPD 599
S + Q++ + + D V E A+KT G SGRE++KL+ QA+ YA
Sbjct: 497 GS----------RSQRLKLDNF-DWVAKCNEVAKKTSGMSGRELSKLVIGWQASAYASET 545
Query: 600 CVLDSQLF-REVVEYKVEEHHQ 620
VL + R + V+ H+
Sbjct: 546 GVLTEAIVDRNTADAMVQHEHK 567
>sp|Q925I1|ATAD3_MOUSE ATPase family AAA domain-containing protein 3 OS=Mus musculus
GN=Atad3 PE=1 SV=1
Length = 591
Score = 333 bits (854), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 215/563 (38%), Positives = 321/563 (57%), Gaps = 44/563 (7%)
Query: 67 RGSGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDV 126
+ S FDP LERAAKA RE SRHA+EA + + QEQT E + YEA Q+
Sbjct: 45 KWSNFDPTGLERAAKAARELEHSRHAKEALSLAQMQEQTLQLEQQSKLKEYEAAVEQLKS 104
Query: 127 ERQRKLAEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEES 183
E+ R AEE R + ++ QARAQ +D+LAR+R + + Q+ N E ++ QEES
Sbjct: 105 EQIRVQAEERRKTLTEETRQHQARAQ---YQDKLARQRYEDQLKQQQLLNEENLRKQEES 161
Query: 184 SIRKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRML 243
++E RR+T E+ + E R E E A+ + +L +R+ +
Sbjct: 162 VQKQEAIRRATVEREMELRHKNEMLRVEAEARARAKADRENADIIREQIRLKAAEHRQTI 221
Query: 244 IERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVT 303
+E +I T + + EG R+ +TD +K+ TV G T LA G+Y+ + V
Sbjct: 222 LE-----------SIRTAGTLLGEGFRAFVTDWDKVTATVAGLTLLAVGVYSAKNATSVA 270
Query: 304 WGYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAG---TAGPVEAIKNNGDI 360
Y+ LG+PSL+RE+S ++ + +R+ + P +A++ +
Sbjct: 271 GRYIEARLGKPSLVRETS----------RISVLEALRHPIQVSRRLVSRPQDALEG---V 317
Query: 361 ILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTG 420
IL PSL+ R++ +A AT NTK +++ +RN+L YGPPGTGKT+ A+++A SG+DYA+MTG
Sbjct: 318 ILSPSLEARVRDIAIATRNTKKNKSLYRNVLMYGPPGTGKTLFAKKLALHSGMDYAIMTG 377
Query: 421 GDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLF 480
GDVAP+G + VT +H++FDWA S++GLLLF+DEADAFL +R + +SE R+ LNA L
Sbjct: 378 GDVAPMGREGVTAMHKVFDWASTSRRGLLLFVDEADAFLRKRATEKISEDLRATLNAFLH 437
Query: 481 RTGDQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEG 540
RTG S +LVLA+N+P D AI DRIDE++ F LP+ EER +L+++Y KY+
Sbjct: 438 RTGQHSSKFMLVLASNQPEQFDWAINDRIDEMVCFALPQREERERLVRMYFDKYVLKPAT 497
Query: 541 DSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDC 600
+ KQ+ K+ D E A+ TEG SGREIA+L + QA Y+ D
Sbjct: 498 EG----------KQRLKVAQFDYGKKC-SEVAQLTEGMSGREIAQLAVAWQAMAYSSEDG 546
Query: 601 VLDSQLFREVVEYKVEEHHQRIK 623
VL + V+ V++H Q+++
Sbjct: 547 VLTEAMMDARVQDAVQQHQQKMQ 569
>sp|Q3KRE0|ATAD3_RAT ATPase family AAA domain-containing protein 3 OS=Rattus norvegicus
GN=Atad3 PE=1 SV=1
Length = 591
Score = 332 bits (850), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 224/609 (36%), Positives = 331/609 (54%), Gaps = 59/609 (9%)
Query: 34 FSFFSSSPQPTSSGNDEAEQTADAQKSREPEEPRGSG-----------FDPEALERAAKA 82
S+ P G AQ E RG+G FDP LERAAKA
Sbjct: 1 MSWLFGIKGPKGEGTGPPLPLPPAQPGAESGGDRGAGDRPSPKDKWSNFDPTGLERAAKA 60
Query: 83 LREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVERQRKLAEEHRNLVQQ 142
RE SRHA+EA ++ + QEQT E + YEA Q+ E+ R AEE R + +
Sbjct: 61 ARELEHSRHAKEALNLAQMQEQTLQLEQQSKLKEYEAAVEQLKSEQIRVQAEERRKTLNE 120
Query: 143 KA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTEEQIQ 199
+ QARAQ +D+LAR+R + + Q+ N E ++ QEES ++E RR+T E+
Sbjct: 121 ETRQHQARAQ---YQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEAIRRATVEREM 177
Query: 200 AQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIERINGEREKWLAAIN 259
+ E R E E A+ + +L +R+ ++E +I
Sbjct: 178 ELRHKNEMLRVEAEARARAKADRENADIIREQIRLKAAEHRQTILE-----------SIR 226
Query: 260 TTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQPSLIRE 319
T + EG R+ +TD +K+ TV G T LA G+Y+ + V Y+ LG+PSL+RE
Sbjct: 227 TAGTLFGEGFRAFVTDWDKVTATVAGLTLLAVGVYSAKNATSVAGRYIEARLGKPSLVRE 286
Query: 320 SSIGKFPWSGLLSQAMNKVIRNKTSAG---TAGPVEAIKNNGDIILHPSLQRRIQHLAKA 376
+S ++ + +R+ + P +A++ +IL PSL+ R++ +A A
Sbjct: 287 TS----------RISVLEALRHPIQVSRRLVSRPQDALEG---VILSPSLEARVRDIAIA 333
Query: 377 TANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIHE 436
T NTK +++ +RN+L YGPPGTGKT+ A+++A SG+DYA+MTGGDVAP+G + VT +H+
Sbjct: 334 TRNTKKNKSLYRNVLMYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMHK 393
Query: 437 IFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLATN 496
+FDWA S++GLLLF+DEADAFL +R + +SE R+ LNA L RTG S +LVLA+N
Sbjct: 394 VFDWASTSRRGLLLFVDEADAFLRKRATEKISEDLRATLNAFLHRTGQHSNKFMLVLASN 453
Query: 497 RPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLC--SDEGDSSSLKWGHLFKKQ 554
+P D AI DRIDE++ F LP+ EER +L+++Y KY+ + EG KQ
Sbjct: 454 QPEQFDWAINDRIDEMVCFALPQREERERLVRMYFDKYVLKPATEG------------KQ 501
Query: 555 QQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEYK 614
+ K+ D E A+ T G SGREIA+L + QA Y+ D VL + V+
Sbjct: 502 RLKVAQFDYGKKC-SEVAQLTAGMSGREIAQLAVAWQAMAYSSEDGVLTEAMMDARVQDA 560
Query: 615 VEEHHQRIK 623
V++H Q+++
Sbjct: 561 VQQHQQKMQ 569
>sp|Q5T9A4|ATD3B_HUMAN ATPase family AAA domain-containing protein 3B OS=Homo sapiens
GN=ATAD3B PE=1 SV=1
Length = 648
Score = 323 bits (829), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 215/564 (38%), Positives = 324/564 (57%), Gaps = 39/564 (6%)
Query: 69 SGFDPEALERAAKALREFNSSRHAREAFDIMRKQEQTRLAELDVEKVHYEAIQSQVDVER 128
S FDP LERAAKA RE SR+A+EA ++ + QEQT E + YEA Q+ E+
Sbjct: 48 SNFDPTGLERAAKAARELEHSRYAKEALNLAQMQEQTLQLEQQSKLKEYEAAVEQLKSEQ 107
Query: 129 QRKLAEEHRNLVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSI 185
R AEE R + ++ QARAQ +D+LAR+R + + Q+ N E ++ QEES
Sbjct: 108 IRAQAEERRKTLSEETRQHQARAQ---YQDKLARQRYEDQLKQQQLLNEENLRKQEESVQ 164
Query: 186 RKEQARRSTEEQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIE 245
++E RR+T ++ + L K E +RV+ EA RA + D R +
Sbjct: 165 KQEAMRRAT---VEREMELRHKN------EMLRVET--EARARAKAERENADIIREQIRL 213
Query: 246 RINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWG 305
+ + R+ L +I T + EG R+ +TDR+K+ TV G T LA G+Y+ + VT
Sbjct: 214 KASEHRQTVLESIRTAGTLFGEGFRAFVTDRDKVTATVAGLTLLAVGVYSAKNATAVTGR 273
Query: 306 YVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPS 365
++ LG+PSL+RE+S + +A+ I+ + P + ++ ++L PS
Sbjct: 274 FIEARLGKPSLVRETS------RITVLEALRHPIQVSRRL-LSRPQDVLEG---VVLSPS 323
Query: 366 LQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP 425
L+ R++ +A AT NTK ++ +R++L YGPPGTGKT+ A+++A SG+DYA+MTGGDVAP
Sbjct: 324 LEARVRDIAIATRNTKKNRGLYRHILLYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAP 383
Query: 426 LGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQ 485
+G + VT +H++FDWA S++GLLLF+DEADAFL +R + +S+ R+ LNA L+ G
Sbjct: 384 MGREGVTAMHKLFDWANTSRRGLLLFMDEADAFLRKRATEEISKDLRATLNAFLYHMGQH 443
Query: 486 SRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSL 545
S +LVLA+N P D AI RID ++ F LP++EER +L++L+ + +
Sbjct: 444 SNKFMLVLASNLPEQFDCAINSRIDVMVHFDLPQQEERERLVRLHFDNCVLKPATEG--- 500
Query: 546 KWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQ 605
K++ K+ D E AR TEG SGREIA+L S QA YA D VL
Sbjct: 501 -------KRRLKLAQFDYGRKC-SEVARLTEGMSGREIAQLAVSWQATAYASKDGVLTEA 552
Query: 606 LFREVVEYKVEEHHQRIK-LAAEG 628
+ V+ V+++ Q+++ L AEG
Sbjct: 553 MMDACVQDAVQQYRQKMRWLKAEG 576
>sp|Q9NVI7|ATD3A_HUMAN ATPase family AAA domain-containing protein 3A OS=Homo sapiens
GN=ATAD3A PE=1 SV=2
Length = 634
Score = 316 bits (809), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 223/616 (36%), Positives = 330/616 (53%), Gaps = 91/616 (14%)
Query: 67 RGSGFDPEALERAAKALREFNSSRHAREAFDI-----------------MR--------- 100
+ S FDP LERAAKA RE SR+A++A ++ MR
Sbjct: 46 KWSNFDPTGLERAAKAARELEHSRYAKDALNLAQMQEQTLQLEQQSKLKMRLEALSLLHT 105
Query: 101 ------------KQEQTRLA-ELDVEKV---------HYEAIQSQVDVERQRKLAEEHRN 138
Q Q RL+ E+V YEA Q+ E+ R AEE R
Sbjct: 106 LVWAWSLCRAGAVQTQERLSGSASPEQVPAGECCALQEYEAAVEQLKSEQIRAQAEERRK 165
Query: 139 LVQQKA---QARAQGLRNEDELARKRLQTDHEAQRRHNTELVKMQEESSIRKEQARRSTE 195
+ ++ QARAQ +D+LAR+R + + Q+ N E ++ QEES ++E RR+T
Sbjct: 166 TLSEETRQHQARAQ---YQDKLARQRYEDQLKQQQLLNEENLRKQEESVQKQEAMRRATV 222
Query: 196 EQIQAQQRLTEKERAEIERETIRVKAMAEAEGRAHEAKLTEDHNRRMLIERINGEREKWL 255
E+ + E R E E A+ + +L +R+ ++E
Sbjct: 223 EREMELRHKNEMLRVEAEARARAKAERENADIIREQIRLKAAEHRQTVLE---------- 272
Query: 256 AAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTWGYVNRILGQPS 315
+I T + EG R+ +TD +K+ TV G T LA G+Y+ + V ++ LG+PS
Sbjct: 273 -SIRTAGTLFGEGFRAFVTDWDKVTATVAGLTLLAVGVYSAKNATLVAGRFIEARLGKPS 331
Query: 316 LIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAK 375
L+RE+S + +A+ I+ + P +A++ ++L PSL+ R++ +A
Sbjct: 332 LVRETS------RITVLEALRHPIQVSRRL-LSRPQDALEG---VVLSPSLEARVRDIAI 381
Query: 376 ATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTKIH 435
AT NTK +++ +RN+L YGPPGTGKT+ A+++A SG+DYA+MTGGDVAP+G + VT +H
Sbjct: 382 ATRNTKKNRSLYRNILMYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVAPMGREGVTAMH 441
Query: 436 EIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVLAT 495
++FDWA S++GLLLF+DEADAFL +R + +SE R+ LNA L+RTG S +LVLA+
Sbjct: 442 KLFDWANTSRRGLLLFVDEADAFLRKRATEKISEDLRATLNAFLYRTGQHSNKFMLVLAS 501
Query: 496 NRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLC--SDEGDSSSLKWGHLFKK 553
N+P D AI DRI+E++ F LP +EER +L+++Y KY+ + EG K
Sbjct: 502 NQPEQFDWAINDRINEMVHFDLPGQEERERLVRMYFDKYVLKPATEG------------K 549
Query: 554 QQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVLDSQLFREVVEY 613
Q+ K+ D E AR TEG SGREIA+L S QA YA D VL + V+
Sbjct: 550 QRLKLAQFDYGRKC-SEVARLTEGMSGREIAQLAVSWQATAYASEDGVLTEAMMDTRVQD 608
Query: 614 KVEEHHQRI-KLAAEG 628
V++H Q++ L AEG
Sbjct: 609 AVQQHQQKMCWLKAEG 624
>sp|Q5T2N8|ATD3C_HUMAN ATPase family AAA domain-containing protein 3C OS=Homo sapiens
GN=ATAD3C PE=2 SV=2
Length = 411
Score = 266 bits (679), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 149/389 (38%), Positives = 231/389 (59%), Gaps = 25/389 (6%)
Query: 245 ERINGEREKWLAAINTTFSHIEEGVRSLLTDRNKLVMTVGGATALAAGIYTTREGARVTW 304
E + + +L +I + EG R+ +TDR+K+ TV G T LA G+Y+ + VT
Sbjct: 37 ESVQKHHQTFLESIRAAGTLFGEGFRAFVTDRDKVTATVAGLTLLAVGVYSAKNATAVTG 96
Query: 305 GYVNRILGQPSLIRESSIGKFPWSGLLSQAMNKVIRNKTSAGTAGPVEAIKNNGDIILHP 364
Y+ LG+PSL+RE+S + +A+ I+ + + P + ++ ++L P
Sbjct: 97 RYIEARLGKPSLVRETS------RITVLEALRHPIQQVSRRLLSRPQDVLEG---VVLSP 147
Query: 365 SLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA 424
SL+ R++ +A T N K ++ +R++L YGPPGTGKT+ A+++A SG+DYA+MTGGDVA
Sbjct: 148 SLEARVRDIAIMTRNIKKNRGLYRHILLYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVA 207
Query: 425 PLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD 484
P+G + VT +H++FDWA S++GLLLF+DEADAFL +R + +SE R+ LNA L+RTG
Sbjct: 208 PMGREGVTAMHKLFDWANTSRRGLLLFVDEADAFLRKRATEKISEDLRATLNAFLYRTGQ 267
Query: 485 QSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLC--SDEGDS 542
S +L+LA+ P D AI ID ++ F LP +EER +L+++YL +Y+ + EG
Sbjct: 268 HSNKFMLILASCHPEQFDWAINACIDVMVHFDLPGQEERARLVRMYLNEYVLKPATEG-- 325
Query: 543 SSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCVL 602
K++ K+ D + E AR TEG S R+IA+L S QA YA D VL
Sbjct: 326 ----------KRRLKLAQFDYGRKCL-EIARLTEGMSCRKIAQLAVSWQATAYASKDGVL 374
Query: 603 DSQLFREVVEYKVEEHHQRIKLAAEGSQP 631
+ V+ V++H Q ++ +G +P
Sbjct: 375 TEAMMDACVQDFVQQHQQMMRW-LKGERP 402
>sp|Q58889|PRS2_METJA Putative 26S protease regulatory subunit homolog MJ1494
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1494
PE=3 SV=2
Length = 371
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 114/232 (49%), Gaps = 37/232 (15%)
Query: 359 DIILHPSLQRRIQHLAKATANTKIH--QAPFRNMLFYGPPGTGKTMVAREIARKSGLDYA 416
+II +++ + + K N K+ AP +N+LFYGPPGTGKT++AR +A ++ +
Sbjct: 125 EIIGQEEAKKKCRIIMKYLENPKLFGEWAP-KNVLFYGPPGTGKTLMARALATETNSSFI 183
Query: 417 MMTGGDVAPLG---AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRS 473
++ ++ +G A I E++ A +S ++FIDE DA R +
Sbjct: 184 LVKAPEL--IGEHVGDASKMIRELYQRASESAP-CIVFIDELDAIGLSREYQSLRGDVSE 240
Query: 474 ALNALLFRTG--DQSRDIVLVLATNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYL 531
+NALL ++ +V + ATN P LD AI R +E IEF LP +EER K+++LY
Sbjct: 241 VVNALLTELDGIKENEGVVTIAATNNPAMLDPAIRSRFEEEIEFKLPNDEERLKIMELYA 300
Query: 532 KKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREI 583
KK + + ++E KT+GFSGR+I
Sbjct: 301 KKMPLPVKAN--------------------------LKEFVEKTKGFSGRDI 326
>sp|P32795|YME1_YEAST Mitochondrial inner membrane i-AAA protease supercomplex subunit
YME1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=YME1 PE=1 SV=1
Length = 747
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 111/215 (51%), Gaps = 37/215 (17%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGG--DVAPLGAQAVTKIHEIFDWAKKSK 445
+ +L GPPGTGKT++AR A ++G+D+ M+G D +G A +I ++F A +S+
Sbjct: 315 KGVLLTGPPGTGKTLLARATAGEAGVDFFFMSGSEFDEVYVGVGA-KRIRDLFAQA-RSR 372
Query: 446 KGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDS 503
++FIDE DA +RN + A+++ LN LL Q+ I+++ ATN P LD
Sbjct: 373 APAIIFIDELDAIGGKRNPKDQAYAKQT-LNQLLVELDGFSQTSGIIIIGATNFPEALDK 431
Query: 504 AIT--DRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIK 561
A+T R D+V+ LP R +LK ++K KIT+
Sbjct: 432 ALTRPGRFDKVVNVDLPDVRGRADILKHHMK------------------------KITLA 467
Query: 562 DLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYA 596
D D I AR T G SG E+A L+ QAAVYA
Sbjct: 468 DNVDPTI--IARGTPGLSGAELANLVN--QAAVYA 498
>sp|A7I8B8|PAN_METB6 Proteasome-activating nucleotidase OS=Methanoregula boonei (strain
6A8) GN=pan PE=3 SV=1
Length = 436
Score = 92.4 bits (228), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 89/160 (55%), Gaps = 8/160 (5%)
Query: 380 TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIF 438
T+I P + +L YGPPGTGKT++A+ +A ++ + + G + V + + E+F
Sbjct: 205 TQIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEGARLVRELF 264
Query: 439 DWAKKSKKGLLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRTGDQSR-DIVLVLA 494
D AKK K ++FIDE DA R + S E QR+ + L G ++R D+ ++ A
Sbjct: 265 DLAKK-KAPTIIFIDEIDAVGASRTEANTSGDREVQRTLMQLLAGMDGFETRGDVKIIGA 323
Query: 495 TNRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLK 532
TNR LD A+ R D +IE PLP EE R +LK++ +
Sbjct: 324 TNRIDILDKALLRPGRFDRIIEIPLPDEEGRLSILKVHTR 363
>sp|Q9SCN8|CD48D_ARATH Cell division control protein 48 homolog D OS=Arabidopsis thaliana
GN=CDC48D PE=1 SV=1
Length = 815
Score = 90.5 bits (223), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 76/267 (28%), Positives = 129/267 (48%), Gaps = 49/267 (18%)
Query: 362 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGG 421
L ++Q ++H K K +P + +LFYGPPG GKT++A+ IA + ++ + G
Sbjct: 493 LQETVQYPVEHPEKFE---KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 549
Query: 422 DVAPLG-AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCER-NSI-HMSEAQRSALNAL 478
++ + ++ + EIFD A++S +LF DE D+ +R NS+ A LN L
Sbjct: 550 ELLTMWFGESEANVREIFDKARQSAP-CVLFFDELDSIATQRGNSVGDAGGAADRVLNQL 608
Query: 479 LFRT-GDQSRDIVLVL-ATNRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKY 534
L G ++ V ++ ATNRP +D A+ R+D++I PLP EE R+++ K L+K
Sbjct: 609 LTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKS 668
Query: 535 LCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAV 594
+ + D +L A+ T+GFSG +I ++ ++
Sbjct: 669 PVAKDVDLRAL--------------------------AKYTQGFSGADITEICQ--RSCK 700
Query: 595 YARPDCVLDSQLFREVVEYKVEEHHQR 621
YA RE +E +E+ +R
Sbjct: 701 YA----------IRENIEKDIEKERKR 717
Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 91/164 (55%), Gaps = 5/164 (3%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDW 440
I P + +L YGPPG+GKT++AR +A ++G + + G ++ + L ++ + + + F+
Sbjct: 237 IGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEE 296
Query: 441 AKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVL-ATNRPG 499
A+K+ ++FIDE D+ +R H +R L G +SR V+V+ ATNRP
Sbjct: 297 AEKNAPS-IIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 355
Query: 500 DLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGD 541
+D A+ R D I+ +P E R ++L+++ K +++ D
Sbjct: 356 SIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVD 399
>sp|Q9LZF6|CD48E_ARATH Cell division control protein 48 homolog E OS=Arabidopsis thaliana
GN=CDC48E PE=1 SV=2
Length = 810
Score = 90.5 bits (223), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 126/267 (47%), Gaps = 49/267 (18%)
Query: 362 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGG 421
L ++Q ++H K K +P + +LFYGPPG GKT++A+ IA + ++ + G
Sbjct: 492 LQETVQYPVEHPEKFE---KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 548
Query: 422 DVAPLG-AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNAL 478
++ + ++ + EIFD A++S +LF DE D+ +R + A LN L
Sbjct: 549 ELLTMWFGESEANVREIFDKARQSAP-CVLFFDELDSIATQRGNSAGDAGGAADRVLNQL 607
Query: 479 LFRT-GDQSRDIVLVL-ATNRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKY 534
L G ++ V ++ ATNRP +DSA+ R+D++I PLP E+ R + K L+K
Sbjct: 608 LTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKACLRKS 667
Query: 535 LCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAV 594
+ + D ++L A+ T+GFSG +I ++ +A
Sbjct: 668 PVAKDVDVTAL--------------------------AKYTQGFSGADITEICQ--RACK 699
Query: 595 YARPDCVLDSQLFREVVEYKVEEHHQR 621
YA RE +E +E +R
Sbjct: 700 YA----------IRENIEKDIENERRR 716
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 91/164 (55%), Gaps = 5/164 (3%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDW 440
I P + +L YGPPG+GKT++AR +A ++G + + G ++ + L ++ + + + F+
Sbjct: 236 IGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEE 295
Query: 441 AKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVL-ATNRPG 499
A+K+ ++FIDE D+ +R + +R L G +SR V+V+ ATNRP
Sbjct: 296 AEKNAPS-IIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 354
Query: 500 DLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGD 541
+D A+ R D I+ +P E R ++L+++ K +++ D
Sbjct: 355 SIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVD 398
>sp|Q58556|Y1156_METJA Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1156 PE=3 SV=1
Length = 903
Score = 90.5 bits (223), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 109/212 (51%), Gaps = 34/212 (16%)
Query: 381 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFD 439
KI P + +L +GPPGTGKT++A+ +A +SG ++ + G ++ + ++ I EIF
Sbjct: 480 KIGVRPPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFR 539
Query: 440 WAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALL--FRTGDQSRDIVLVLATNR 497
A++S ++F DE DA +R S +N LL ++ +D+V++ ATNR
Sbjct: 540 KARQSAP-CIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLLTELDGMEEPKDVVVIAATNR 598
Query: 498 PGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQ 555
P +D A+ R+D VI P+P E+ R + K++ +
Sbjct: 599 PDIIDPALLRPGRLDRVILVPVPDEKARLDIFKIHTRSM--------------------- 637
Query: 556 QKITIKDLSDNV-IQEAARKTEGFSGREIAKL 586
+L+++V ++E A+KTEG++G +I L
Sbjct: 638 ------NLAEDVNLEELAKKTEGYTGADIEAL 663
Score = 70.1 bits (170), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 90/169 (53%), Gaps = 5/169 (2%)
Query: 381 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFD 439
K+ P + +L GPPGTGKT++A+ +A ++G ++ ++ G ++ + + + +IF+
Sbjct: 207 KLGIEPPKGVLLVGPPGTGKTLLAKAVANEAGANFYVINGPEIMSKYVGETEENLRKIFE 266
Query: 440 WAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVL-ATNRP 498
A+++ ++FIDE DA +R+ +R L G + R V+V+ ATNRP
Sbjct: 267 EAEENAPS-IIFIDEIDAIAPKRDEATGEVERRLVAQLLTLMDGLKGRGQVVVIGATNRP 325
Query: 499 GDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSL 545
LD A+ R D I +P E R ++L+++ + +++ D L
Sbjct: 326 NALDPALRRPGRFDREIVIGVPDREGRKEILQIHTRNMPLAEDVDLDYL 374
>sp|Q5ZK92|SPAST_CHICK Spastin OS=Gallus gallus GN=SPAST PE=2 SV=1
Length = 613
Score = 89.4 bits (220), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 107/211 (50%), Gaps = 36/211 (17%)
Query: 384 QAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTK----IHEIFD 439
+AP R +L +GPPG GKTM+A+ +A +S + ++ A L ++ V + + +F
Sbjct: 369 RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISA---ASLTSKYVGEGEKLVRALFA 425
Query: 440 WAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQS--RDIVLVL-ATN 496
A++ + ++FIDE D+ LCER ++R L+ G QS D +LV+ ATN
Sbjct: 426 VARELQPS-IIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSSGEDRILVMGATN 484
Query: 497 RPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQ 556
RP +LD A+ R + + LP EE R LLK +L KQ
Sbjct: 485 RPQELDDAVLRRFTKRVYVSLPNEETRLILLK--------------------NLLSKQGS 524
Query: 557 KITIKDLSDNVIQEAARKTEGFSGREIAKLM 587
+T K+L+ + AR T+G+SG ++ L+
Sbjct: 525 PLTQKELA-----QLARMTDGYSGSDLTALV 550
>sp|A9KIG5|FTSH_CLOPH ATP-dependent zinc metalloprotease FtsH OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=ftsH PE=3 SV=1
Length = 577
Score = 89.4 bits (220), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 131/272 (48%), Gaps = 50/272 (18%)
Query: 334 AMNKVIRNKTSAG-TAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLF 392
A NK N+ G AG EA GDII + L + P + ++
Sbjct: 134 AKNKKAENRVKLGDVAGNAEAKSMVGDIIDFIKEPEKYSALGA--------RMP-KGVML 184
Query: 393 YGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPL--GAQAVTKIHEIFDWAKKSKKGLLL 450
YGPPGTGKT++A+ IA ++G+ + M+G D + G A ++I +F+ AKKS+K ++
Sbjct: 185 YGPPGTGKTLIAKAIATEAGVPFYAMSGSDFVQMYVGVGA-SRIRTLFNKAKKSEKA-VI 242
Query: 451 FIDEADAFLCER-NSIHMSEAQRS-ALNALLFRTGD--QSRDIVLVLATNRPGDLDSAIT 506
FIDE DA +R S S +R LNALL +++ IV++ ATNR LD A+
Sbjct: 243 FIDEIDAIGKKRARSTSASNDERDQTLNALLTEMSGFHENKGIVVIGATNRLDTLDEALL 302
Query: 507 --DRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLS 564
R D IE LP R K+LKLY GD K L
Sbjct: 303 RPGRFDRQIEVGLPDILARKKILKLY---------GDK------------------KPLG 335
Query: 565 DNV-IQEAARKTEGFSGREIAKLM--ASVQAA 593
D+V ++ A+ T FSG + L+ A++QAA
Sbjct: 336 DDVDLEVLAKNTVSFSGAMLENLLNEAAIQAA 367
>sp|P54774|CDC48_SOYBN Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2
SV=1
Length = 807
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 115/233 (49%), Gaps = 39/233 (16%)
Query: 362 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGG 421
L ++Q ++H K K +P + +LFYGPPG GKT++A+ IA + ++ + G
Sbjct: 493 LQETVQYPVEHPEKFE---KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 549
Query: 422 DVAPLG-AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSA---LNA 477
++ + ++ + EIFD A++S +LF DE D+ +R S + +A +A LN
Sbjct: 550 ELLTMWFGESEANVREIFDKARQSAP-CVLFFDELDSIATQRGS-SVGDAGGAADRVLNQ 607
Query: 478 LLFRTGDQS--RDIVLVLATNRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKK 533
LL S + + ++ ATNRP +D A+ R+D++I PLP E+ R ++ K L+K
Sbjct: 608 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRK 667
Query: 534 YLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKL 586
+ D +L AR T+GFSG +I ++
Sbjct: 668 SPIAKNVDLRAL--------------------------ARHTQGFSGADITEI 694
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 5/164 (3%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDW 440
I P + +L YGPPG+GKT++AR +A ++G + + G ++ + L ++ + + + F+
Sbjct: 237 IGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEE 296
Query: 441 AKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVL-ATNRPG 499
A+K+ ++FIDE D+ +R H +R L G +SR V+V+ ATNRP
Sbjct: 297 AEKNAPS-IIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 355
Query: 500 DLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGD 541
+D A+ R D I+ +P E R ++L+++ K SD+ D
Sbjct: 356 SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVD 399
>sp|P46468|CDAT_PLAF7 Putative cell division cycle ATPase OS=Plasmodium falciparum (isolate
3D7) GN=PF07_0047 PE=3 SV=2
Length = 1229
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 103/207 (49%), Gaps = 32/207 (15%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLG-AQAVTKIHEIFDWAKKSKK 446
+ +L YGPPG GKT++A+ IA + ++ + G ++ + ++ + ++FD A+ +
Sbjct: 969 KGILLYGPPGCGKTLLAKAIANECKANFISVKGPELLTMWFGESEANVRDLFDKARAASP 1028
Query: 447 GLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSA 504
++ F DE D+ ERNS ++A +N +L ++ + I ++ ATNRP LD A
Sbjct: 1029 CIIFF-DEIDSLAKERNSNTNNDASDRVINQILTEIDGINEKKTIFIIAATNRPDILDKA 1087
Query: 505 IT--DRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKD 562
+T R+D++I LP + R+ + K LK +++ D
Sbjct: 1088 LTRPGRLDKLIYISLPDLKSRYSIFKAILKNTPLNEDVD--------------------- 1126
Query: 563 LSDNVIQEAARKTEGFSGREIAKLMAS 589
I + A++TEGFSG +I L S
Sbjct: 1127 -----IHDMAKRTEGFSGADITNLCQS 1148
Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 71/259 (27%), Positives = 125/259 (48%), Gaps = 40/259 (15%)
Query: 385 APFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP--LGAQAVTKIHEIFDWAK 442
AP + +L +G PGTGKT +A+ IA +S ++ G ++ +G ++ K+ +IF A
Sbjct: 560 AP-KGVLMHGIPGTGKTSIAKAIANESNAYCYIINGPEIMSKHIG-ESEQKLRKIFKKAS 617
Query: 443 KSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVL-ATNRPGDL 501
+ K ++FIDE D+ +R+ + +R L G + + VLVL ATNRP +
Sbjct: 618 E-KTPCIIFIDEIDSIANKRSKSNNELEKRVVSQLLTLMDGLKKNNNVLVLAATNRPNSI 676
Query: 502 DSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKIT 559
D A+ R D IE P+P E+ R+++L L K ++ K+
Sbjct: 677 DPALRRFGRFDREIEIPVPDEQGRYEIL----------------------LTKTKKMKLD 714
Query: 560 IKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYARPDCV----LDSQLFREVVEYKV 615
D +++ A++ G+ G ++A+L +AA+ + + LD + F E ++ V
Sbjct: 715 ----PDVNLRKIAKECHGYVGADLAQL--CFEAAIQCIKEHIHFLDLDEEDFIEFMKISV 768
Query: 616 EEHHQRIKLAAEGSQPTKN 634
+E + + GS T N
Sbjct: 769 DEDKKNMGNEPYGSSHTNN 787
>sp|Q6AZT2|SPAST_XENLA Spastin OS=Xenopus laevis GN=spast PE=2 SV=1
Length = 600
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 106/210 (50%), Gaps = 36/210 (17%)
Query: 384 QAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAVTK----IHEIFD 439
+AP R +L +GPPG GKTM+A+ +A +S + ++ A L ++ V + + +F
Sbjct: 356 RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISA---ASLTSKYVGEGEKLVRALFS 412
Query: 440 WAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQS--RDIVLVL-ATN 496
A++ + ++FIDE D+ LCER ++R L+ G QS D VLV+ ATN
Sbjct: 413 VARELQPS-IIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSGGDDRVLVMGATN 471
Query: 497 RPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQ 556
RP +LD A+ R + + LP EE R LLK +L KQ
Sbjct: 472 RPQELDDAVLRRFTKRVYVALPNEETRLVLLK--------------------NLLSKQGN 511
Query: 557 KITIKDLSDNVIQEAARKTEGFSGREIAKL 586
++ K+L+ + +R TEG+SG +I L
Sbjct: 512 PLSEKELT-----QLSRLTEGYSGSDITAL 536
>sp|P54609|CD48A_ARATH Cell division control protein 48 homolog A OS=Arabidopsis thaliana
GN=CDC48A PE=1 SV=1
Length = 809
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 126/268 (47%), Gaps = 50/268 (18%)
Query: 362 LHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGG 421
L ++Q ++H K K +P + +LFYGPPG GKT++A+ IA + ++ + G
Sbjct: 492 LQETVQYPVEHPEKFE---KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 548
Query: 422 DVAPLG-AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRS---ALNA 477
++ + ++ + EIFD A++S +LF DE D+ +R + + LN
Sbjct: 549 ELLTMWFGESEANVREIFDKARQSAP-CVLFFDELDSIATQRGGGSGGDGGGAADRVLNQ 607
Query: 478 LLFRT-GDQSRDIVLVL-ATNRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKK 533
LL G ++ V ++ ATNRP +DSA+ R+D++I PLP E+ R + K L+K
Sbjct: 608 LLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAALRK 667
Query: 534 YLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAA 593
+ + D +L A+ T+GFSG +I ++ +A
Sbjct: 668 SPIAKDVDIGAL--------------------------AKYTQGFSGADITEICQ--RAC 699
Query: 594 VYARPDCVLDSQLFREVVEYKVEEHHQR 621
YA RE +E +E+ +R
Sbjct: 700 KYA----------IRENIEKDIEKEKRR 717
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 91/164 (55%), Gaps = 5/164 (3%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDW 440
I P + +L YGPPG+GKT++AR +A ++G + + G ++ + L ++ + + + F+
Sbjct: 236 IGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEE 295
Query: 441 AKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVL-ATNRPG 499
A+K+ ++FIDE D+ +R + +R L G +SR V+V+ ATNRP
Sbjct: 296 AEKNAPS-IIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 354
Query: 500 DLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGD 541
+D A+ R D I+ +P E R ++L+++ K +++ D
Sbjct: 355 SIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVD 398
>sp|A3CV35|PAN_METMJ Proteasome-activating nucleotidase OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1
Length = 412
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 86/165 (52%), Gaps = 8/165 (4%)
Query: 373 LAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAV 431
L K K+ +P + +L YGPPGTGKT++AR +A ++ + + G + V +
Sbjct: 173 LTKPQLFEKVGISPPKGVLLYGPPGTGKTLLARAVAHQTNAHFLRVVGSELVQKYIGEGA 232
Query: 432 TKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRTG-DQSR 487
+ E+FD AK+ ++FIDE DA RN S E QR+ + L G D
Sbjct: 233 RLVRELFDLAKQRAPS-IIFIDEIDAIGAHRNDSTTSGDREVQRTLMQLLAEMDGFDNRG 291
Query: 488 DIVLVLATNRPGDLDSAIT--DRIDEVIEFPLPREEERFKLLKLY 530
D+ +V ATNR LD A+ R D +IE PLP + R +LK++
Sbjct: 292 DVKIVAATNRIDILDRALLRPGRFDRMIEIPLPDHQGRLAILKIH 336
>sp|Q58576|PAN_METJA Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=pan PE=1 SV=1
Length = 430
Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 117/242 (48%), Gaps = 40/242 (16%)
Query: 381 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFD 439
K+ P + +L YGPPGTGKT++A+ +A ++ + + G + V + + + +IF
Sbjct: 198 KVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFK 257
Query: 440 WAKKSKKGLLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRTGDQSR-DIVLVLAT 495
AK+ K ++FIDE DA +R E QR+ + L G +R D+ ++ AT
Sbjct: 258 LAKE-KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGAT 316
Query: 496 NRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKK 553
NRP LD AI R D +IE P P E+ R ++LK++ +K
Sbjct: 317 NRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKM------------------- 357
Query: 554 QQQKITIKDLSDNV-IQEAARKTEGFSGREIAKLM--ASVQAAVYARPDCVLDSQLFREV 610
+L+++V ++E A+ TEG G E+ + A + A R +D FR+
Sbjct: 358 --------NLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDD--FRKA 407
Query: 611 VE 612
VE
Sbjct: 408 VE 409
>sp|Q8SSJ5|CDC48_ENCCU Cell division control protein 48 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=CDC48 PE=1 SV=1
Length = 780
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 128/260 (49%), Gaps = 35/260 (13%)
Query: 380 TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIF 438
+KI P + +L YGPPGTGKT++AR IA ++G ++ G ++ + + ++ + + + F
Sbjct: 235 SKIGVKPPKGILLYGPPGTGKTLIARAIANETGAFLFLINGPEIMSKMAGESESNLRKAF 294
Query: 439 DWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALL-FRTGDQSRDIVLVL-ATN 496
+ A+K+ ++FIDE DA +R E +R ++ LL G ++R V+VL ATN
Sbjct: 295 EEAEKNSPA-IIFIDEIDALAPKREK-SQGEVERRIVSQLLTLMDGMKARSNVIVLGATN 352
Query: 497 RPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQ 554
RP +D A+ R D IE +P E R ++L+++ K S++ D ++
Sbjct: 353 RPNSIDPALRRYGRFDREIEIGVPDETGRLEILRIHTKNMKMSEDVDLVAIN-------- 404
Query: 555 QQKITIKDLSDNVIQEAARKTEGFSGREIAKLM--ASVQAAVYARPDCVLDSQLFREVVE 612
++ GF+G ++A L A++Q P LDS+ V
Sbjct: 405 ------------------KELHGFTGSDLASLCSEAALQQIREKLPQIDLDSEKIDAKVL 446
Query: 613 YKVEEHHQRIKLAAEGSQPT 632
++ + + + A E + P+
Sbjct: 447 ASLKVNSENFRYAIEHTDPS 466
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 90/167 (53%), Gaps = 7/167 (4%)
Query: 381 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLG-AQAVTKIHEIFD 439
K P + +LFYGPPG GKT++A+ +A + ++ + G ++ + ++ + I ++F
Sbjct: 509 KFGMTPAKGVLFYGPPGCGKTLLAKAVATECKANFISIKGPELLSMWVGESESNIRDLFA 568
Query: 440 WAKKSKKGLLLFIDEADAFLCERNSIHMSE-AQRSALNALLFRTG--DQSRDIVLVLATN 496
A+ + +LF DE D+ R+ S A LN LL +Q +++ ++ ATN
Sbjct: 569 RARGAAP-CVLFFDEIDSIAKARSGNDGSSGATDRMLNQLLSEMDGINQKKNVFVIGATN 627
Query: 497 RPGDLDSAIT--DRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGD 541
RP LDSA+ R+D+++ PLP + R +L+ LKK S E D
Sbjct: 628 RPDQLDSALMRPGRLDQLVYIPLPDLDSRVSILQATLKKTPLSPEID 674
>sp|Q2FQ56|PAN_METHJ Proteasome-activating nucleotidase OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=pan PE=3 SV=1
Length = 412
Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 111/224 (49%), Gaps = 38/224 (16%)
Query: 381 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFD 439
KI P + +L YGPPGTGKT++A+ +A ++ + G + V + + E+FD
Sbjct: 181 KIGINPPKGVLLYGPPGTGKTLLAKAVAHETHAIFLHTVGSELVQKYIGEGARLVRELFD 240
Query: 440 WAKKSKKGLLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRTGDQSR-DIVLVLAT 495
AK+ K ++FIDE DA R S E QR+ + L G + R D+ ++ AT
Sbjct: 241 LAKE-KAPSIVFIDEIDAIGASRTEAMTSGDREVQRTLMQLLAAMDGFEPRGDVKIIGAT 299
Query: 496 NRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKK 553
NR LD+A+ R D +IE PLP E R+ +LK++ + C
Sbjct: 300 NRIDILDAALLRPGRFDRIIEIPLPDTEGRYSILKVHTR---C----------------- 339
Query: 554 QQQKITIKDLSDNV-IQEAARKTEGFSGREIAKLMASVQAAVYA 596
+LS++V + E AR TEG +G E+ + ++A ++A
Sbjct: 340 -------MNLSEDVDLMEVARLTEGRNGAELNAI--CMEAGMFA 374
>sp|Q6LWR0|PAN_METMP Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain S2 / LL) GN=pan PE=3 SV=1
Length = 407
Score = 86.7 bits (213), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 87/160 (54%), Gaps = 8/160 (5%)
Query: 381 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFD 439
K+ P + +L YGPPGTGKT++A+ +A ++ + + G + V + + ++F
Sbjct: 176 KVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFK 235
Query: 440 WAKKSKKGLLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRTGDQSR-DIVLVLAT 495
AK+ K ++FIDE DA +R E QR+ + L G SR D+ ++ AT
Sbjct: 236 LAKE-KSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAAT 294
Query: 496 NRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKK 533
NRP LD AI R D +IE +P E+ R ++LK++ +K
Sbjct: 295 NRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEK 334
>sp|A6VHR1|PAN_METM7 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1
Length = 407
Score = 86.7 bits (213), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 87/160 (54%), Gaps = 8/160 (5%)
Query: 381 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFD 439
K+ P + +L YGPPGTGKT++A+ +A ++ + + G + V + + ++F
Sbjct: 176 KVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFK 235
Query: 440 WAKKSKKGLLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRTGDQSR-DIVLVLAT 495
AK+ K ++FIDE DA +R E QR+ + L G SR D+ ++ AT
Sbjct: 236 LAKE-KSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAAT 294
Query: 496 NRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKK 533
NRP LD AI R D +IE +P E+ R ++LK++ +K
Sbjct: 295 NRPDILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEK 334
>sp|Q9P7J5|YJNA_SCHPO Uncharacterized AAA domain-containing protein C24B10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC24B10.10c PE=3 SV=1
Length = 355
Score = 86.7 bits (213), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 90/154 (58%), Gaps = 14/154 (9%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA-PLGAQAVTKIHEIFDWAKKSKK 446
+ +L YGPPG GKTM+A+ +A++S + ++ G + ++ + +F A+K +
Sbjct: 126 KGLLLYGPPGCGKTMLAKALAKQSQATFINVSVGLLTDKWFGESNKLVDALFTLARKLEP 185
Query: 447 GLLLFIDEADAFLCERN-SIHMSEAQ-----RSALNALLFRTGDQSRDIVLVL-ATNRPG 499
++ FIDE D FL +R + H + AQ S + LL QSR VLVL ATNRP
Sbjct: 186 TII-FIDEIDTFLRQRQRTDHEAMAQIKAEFMSMWDGLL---SGQSR--VLVLGATNRPA 239
Query: 500 DLDSAITDRIDEVIEFPLPREEERFKLLKLYLKK 533
D+D AI R+ +V PLP E+R K+L+LYLKK
Sbjct: 240 DIDEAIRRRMPKVFSIPLPNAEQRRKILELYLKK 273
>sp|Q793F9|VPS4A_RAT Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus
GN=Vps4a PE=2 SV=1
Length = 437
Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 129/275 (46%), Gaps = 52/275 (18%)
Query: 339 IRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGT 398
IR AG G EA+K + ++ P + HL + P+R +L +GPPGT
Sbjct: 124 IRWNDVAGLEGAKEALK---EAVILPI---KFPHLFTG------KRTPWRGILLFGPPGT 171
Query: 399 GKTMVAREIARKSGLD--YAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEAD 456
GK+ +A+ +A ++ +++ + ++ ++ + +F+ A++ K ++ FIDE D
Sbjct: 172 GKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSII-FIDEVD 230
Query: 457 AFLCERNSIHMSEAQRSALNALLFR---TGDQSRDIVLVLATNRPGDLDSAITDRIDEVI 513
+ RN + SEA R L + G+ + +++ ATN P LDSAI R ++ I
Sbjct: 231 SLCGSRNE-NESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRI 289
Query: 514 EFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAAR 573
PLP E R ++ +L+L T +L+D I E AR
Sbjct: 290 YIPLPEEAARAQMFRLHLGS-------------------------TPHNLTDANIHELAR 324
Query: 574 KTEGFSGREIAKLMAS--------VQAAVYARPDC 600
KTEG+SG +I+ ++ VQ+A + + C
Sbjct: 325 KTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVC 359
>sp|Q8VEJ9|VPS4A_MOUSE Vacuolar protein sorting-associated protein 4A OS=Mus musculus
GN=Vps4a PE=1 SV=1
Length = 437
Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 129/275 (46%), Gaps = 52/275 (18%)
Query: 339 IRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGT 398
IR AG G EA+K + ++ P + HL + P+R +L +GPPGT
Sbjct: 124 IRWNDVAGLEGAKEALK---EAVILPI---KFPHLFTG------KRTPWRGILLFGPPGT 171
Query: 399 GKTMVAREIARKSGLD--YAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEAD 456
GK+ +A+ +A ++ +++ + ++ ++ + +F+ A++ K ++ FIDE D
Sbjct: 172 GKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSII-FIDEVD 230
Query: 457 AFLCERNSIHMSEAQRSALNALLFR---TGDQSRDIVLVLATNRPGDLDSAITDRIDEVI 513
+ RN + SEA R L + G+ + +++ ATN P LDSAI R ++ I
Sbjct: 231 SLCGSRNE-NESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRI 289
Query: 514 EFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAAR 573
PLP E R ++ +L+L T +L+D I E AR
Sbjct: 290 YIPLPEEAARAQMFRLHLGS-------------------------TPHNLTDANIHELAR 324
Query: 574 KTEGFSGREIAKLMAS--------VQAAVYARPDC 600
KTEG+SG +I+ ++ VQ+A + + C
Sbjct: 325 KTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVC 359
>sp|Q9UN37|VPS4A_HUMAN Vacuolar protein sorting-associated protein 4A OS=Homo sapiens
GN=VPS4A PE=1 SV=1
Length = 437
Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 129/275 (46%), Gaps = 52/275 (18%)
Query: 339 IRNKTSAGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGT 398
IR AG G EA+K + ++ P + HL + P+R +L +GPPGT
Sbjct: 124 IRWNDVAGLEGAKEALK---EAVILPI---KFPHLFTG------KRTPWRGILLFGPPGT 171
Query: 399 GKTMVAREIARKSGLD--YAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEAD 456
GK+ +A+ +A ++ +++ + ++ ++ + +F+ A++ K ++ FIDE D
Sbjct: 172 GKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKPSII-FIDEVD 230
Query: 457 AFLCERNSIHMSEAQRSALNALLFR---TGDQSRDIVLVLATNRPGDLDSAITDRIDEVI 513
+ RN + SEA R L + G+ + +++ ATN P LDSAI R ++ I
Sbjct: 231 SLCGSRNE-NESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRI 289
Query: 514 EFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAAR 573
PLP E R ++ +L+L T +L+D I E AR
Sbjct: 290 YIPLPEEAARAQMFRLHLGS-------------------------TPHNLTDANIHELAR 324
Query: 574 KTEGFSGREIAKLMAS--------VQAAVYARPDC 600
KTEG+SG +I+ ++ VQ+A + + C
Sbjct: 325 KTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVC 359
>sp|Q96372|CDC48_CAPAN Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP
PE=2 SV=1
Length = 805
Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 74/264 (28%), Positives = 123/264 (46%), Gaps = 47/264 (17%)
Query: 366 LQRRIQHLAKATAN-TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA 424
LQ +Q+ + K +P + +LFYGPPG GKT++A+ IA + ++ + G ++
Sbjct: 493 LQETVQYPVEPPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 552
Query: 425 PLG-AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFR 481
+ ++ + EIFD A++S +LF DE D+ +R S A LN LL
Sbjct: 553 TMWFGESEANVREIFDKARQSAP-CVLFFDELDSIATQRGSSSGDAGGAADRVLNQLLTE 611
Query: 482 T-GDQSRDIVLVL-ATNRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCS 537
G ++ V ++ ATNRP +D A+ R+D++I PLP E+ R ++ K L+K S
Sbjct: 612 MDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPLS 671
Query: 538 DEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYAR 597
+ D +L A+ T+GFSG ++ ++ +A YA
Sbjct: 672 KDIDLRAL--------------------------AKHTQGFSGADVTEICQ--RACKYA- 702
Query: 598 PDCVLDSQLFREVVEYKVEEHHQR 621
RE +E +E +R
Sbjct: 703 ---------IRENIEKDIEREKRR 717
Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 90/164 (54%), Gaps = 5/164 (3%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDW 440
I P + +L YGPPG+GKT++AR +A ++G + + G ++ + L ++ + + + F+
Sbjct: 237 IGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEE 296
Query: 441 AKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSRDIVLVL-ATNRPG 499
A+K+ ++FIDE D+ +R H +R L G +SR V+V+ ATNRP
Sbjct: 297 AEKNAPS-IIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPN 355
Query: 500 DLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGD 541
+D A+ R D I+ +P E R ++L ++ K ++E D
Sbjct: 356 SIDPALRRFGRFDREIDIGVPDEVGRLEVLGIHTKNMKLAEEVD 399
>sp|A9A916|PAN_METM6 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1
Length = 407
Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 8/160 (5%)
Query: 381 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFD 439
K+ P + +L YGPPGTGKT++A+ +A ++ + + G + V + + ++F
Sbjct: 176 KVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFK 235
Query: 440 WAKKSKKGLLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRTGDQSR-DIVLVLAT 495
AK+ K ++FIDE DA +R E QR+ + L G SR D+ ++ AT
Sbjct: 236 LAKE-KSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAAT 294
Query: 496 NRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKK 533
NRP LD AI R D +IE +P E+ R +LK++ +K
Sbjct: 295 NRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEK 334
>sp|A4G0S4|PAN_METM5 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1
Length = 407
Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 86/160 (53%), Gaps = 8/160 (5%)
Query: 381 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFD 439
K+ P + +L YGPPGTGKT++A+ +A ++ + + G + V + + ++F
Sbjct: 176 KVGIVPPKGVLLYGPPGTGKTLLAKAVAYETNASFVRVVGSELVKKFIGEGAKLVRDVFK 235
Query: 440 WAKKSKKGLLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRTGDQSR-DIVLVLAT 495
AK+ K ++FIDE DA +R E QR+ + L G SR D+ ++ AT
Sbjct: 236 LAKE-KSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAAT 294
Query: 496 NRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKK 533
NRP LD AI R D +IE +P E+ R +LK++ +K
Sbjct: 295 NRPDILDPAILRPGRFDRIIEISMPDEDGRLDILKIHTEK 334
>sp|Q7KN62|TERA_DROME Transitional endoplasmic reticulum ATPase TER94 OS=Drosophila
melanogaster GN=TER94 PE=1 SV=1
Length = 801
Score = 85.9 bits (211), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 145/304 (47%), Gaps = 50/304 (16%)
Query: 363 HPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD 422
HPSL + I P R +L YGPPGTGKT++AR +A ++G + ++ G +
Sbjct: 223 HPSLFK------------AIGVKPPRGILMYGPPGTGKTLIARAVANETGAFFFLINGPE 270
Query: 423 V-APLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNAL--L 479
+ + L ++ + + + F+ A+K+ ++FIDE DA +R+ H E +R ++ L L
Sbjct: 271 IMSKLAGESESNLRKAFEEAEKNSPA-IIFIDEIDAIAPKRDKTH-GEVERRIVSQLLTL 328
Query: 480 FRTGDQSRDIVLVLATNRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCS 537
+S ++++ ATNRP +D A+ R D I+ +P R ++L+++ K
Sbjct: 329 MDGMKKSSHLIVMAATNRPNSIDPALRRFGRFDREIDIGIPDATGRLEVLRIHTKNMKLH 388
Query: 538 DEGDSSSL---KWGHL------------FKKQQQKITIKDLSDN-----VIQEAARKTEG 577
D+ D + GH+ ++ ++K+ + DL D+ V+ A E
Sbjct: 389 DDVDLEQIAAESHGHVGADLASLCSEAALQQIREKMDLIDLEDDKIDAEVLASLAVTMEN 448
Query: 578 FSGREIAKLMASVQAAVYARPDCV------LDS--QLFREVVEYKVEEHHQRIKLAAEGS 629
F ++++ V P+ L+S + +E+V+Y VE + +K G
Sbjct: 449 FRYAMTKSSPSALRETVVEVPNTTWTDIGGLESVKKELQELVQYPVEHPDKFLKF---GM 505
Query: 630 QPTK 633
QP++
Sbjct: 506 QPSR 509
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 114/245 (46%), Gaps = 41/245 (16%)
Query: 349 GPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIA 408
G +E++K L +Q ++H K K P R +LFYGPPG GKT++A+ IA
Sbjct: 477 GGLESVKKE----LQELVQYPVEHPDKFL---KFGMQPSRGVLFYGPPGCGKTLLAKAIA 529
Query: 409 RKSGLDYAMMTGGDVAPLG-AQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCER--NSI 465
+ ++ + G ++ + ++ + +IFD A +S +LF DE D+ R N
Sbjct: 530 NECQANFISVKGPELLTMWFGESEANVRDIFDKA-RSAAPCVLFFDELDSIAKARGGNVG 588
Query: 466 HMSEAQRSALNALLFRTGDQS--RDIVLVLATNRPGDLDSAI--TDRIDEVIEFPLPREE 521
A +N +L +++ ++ ATNRP +D AI R+D++I PLP ++
Sbjct: 589 DAGGAADRVINQILTEMDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDDK 648
Query: 522 ERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGR 581
R +LK L+K + E D + + A+ T+GFSG
Sbjct: 649 SREAILKANLRKSPLAKEVDLTYI--------------------------AKVTQGFSGA 682
Query: 582 EIAKL 586
++ ++
Sbjct: 683 DLTEI 687
>sp|A6UQT3|PAN_METVS Proteasome-activating nucleotidase OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1
Length = 407
Score = 85.9 bits (211), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 8/160 (5%)
Query: 381 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFD 439
K+ P + +L YGPPGTGKT++A+ +AR++ + + G + V + + ++F
Sbjct: 176 KVGIVPPKGVLLYGPPGTGKTLLAKAVARETNASFVRVVGSELVKKFIGEGAKLVRDVFK 235
Query: 440 WAKKSKKGLLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRTGDQSR-DIVLVLAT 495
AK+ K ++FIDE DA +R E QR+ + L G SR D+ ++ AT
Sbjct: 236 LAKE-KSPCIIFIDEIDAVASKRTESLTGGDREVQRTLMQLLAEMDGFDSRGDVKIIAAT 294
Query: 496 NRPGDLDSAIT--DRIDEVIEFPLPREEERFKLLKLYLKK 533
NRP LD AI R D +IE P E+ R ++ K++ K
Sbjct: 295 NRPDILDPAILRPGRFDRIIEIAAPDEDGRLEIFKIHTDK 334
>sp|P54811|TERA1_CAEEL Transitional endoplasmic reticulum ATPase homolog 1
OS=Caenorhabditis elegans GN=cdc-48.1 PE=1 SV=1
Length = 809
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/280 (25%), Positives = 135/280 (48%), Gaps = 36/280 (12%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDWAKKS 444
P R +L +GPPGTGKT++AR +A ++G + ++ G +V + + ++ + + + F+ +K+
Sbjct: 243 PPRGILLFGPPGTGKTLIARAVANETGSFFFLINGPEVMSKMSGESESNLRKAFEECEKN 302
Query: 445 KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTGDQSR-DIVLVLATNRPGDLDS 503
+ +LFIDE DA +R + +R L G + R ++V++ ATNRP +D
Sbjct: 303 QPA-ILFIDEIDAIAPKREKTNGEVERRIVSQLLTLMDGVKGRSNLVVIAATNRPNSIDG 361
Query: 504 AI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDE---------------GDSSSLK 546
A+ R D I+ +P R ++L+++ K +D+ D +SL
Sbjct: 362 ALRRFGRFDREIDIGIPDAVGRLEILRIHTKNMKLADDVDLEQIANECHGFVGADLASLC 421
Query: 547 WGHLFKKQQQKITIKDLSDN-----VIQEAARKTEGFSGREIAKLMASVQAAVYARPDCV 601
++ ++K+ + DL D+ V+ A E F + ++++ AV P+
Sbjct: 422 SEAALQQIREKMELIDLEDDQIDAEVLNSLAVTMENFRFAQGKSSPSALREAVVETPNTT 481
Query: 602 LDS--------QLFREVVEYKVEEHHQRIKLAAEGSQPTK 633
+ +E+V+Y VE + +K G QP++
Sbjct: 482 WSDIGGLQNVKRELQELVQYPVEHPEKYLKF---GMQPSR 518
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 99/194 (51%), Gaps = 14/194 (7%)
Query: 365 SLQRRIQHLAKATAN-----TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMT 419
+++R +Q L + K P R +LFYGPPG GKT++A+ IA + ++ +
Sbjct: 490 NVKRELQELVQYPVEHPEKYLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISIK 549
Query: 420 GGDVAPL-GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSA---L 475
G ++ + ++ + ++FD A+ + +LF DE D+ R + ++ +
Sbjct: 550 GPELLTMWFGESEANVRDVFDKARAAAP-CVLFFDELDSIAKARGGGAGGDGGGASDRVI 608
Query: 476 NALLFRTG--DQSRDIVLVLATNRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYL 531
N +L + +++ ++ ATNRP +D A+ R+D++I PLP E R ++LK L
Sbjct: 609 NQVLTEMDGMNAKKNVFIIGATNRPDIIDPAVLRPGRLDQLIYIPLPDEASRHQILKASL 668
Query: 532 KKYLCSDEGDSSSL 545
+K S + D + L
Sbjct: 669 RKTPLSKDLDLTFL 682
>sp|P54776|PRS6A_SOLLC 26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum
GN=TBP1 PE=2 SV=1
Length = 423
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 122/245 (49%), Gaps = 40/245 (16%)
Query: 366 LQRRIQHLAKATANTKIHQA--------PFRNMLFYGPPGTGKTMVAREIARKSGLDYAM 417
L+++IQ L +A HQ P + +L YGPPGTGKT++AR A ++ +
Sbjct: 175 LEKQIQELVEAIVLPMTHQERFQKLGVRPPKGVLLYGPPGTGKTLMARACAAQTNATFLK 234
Query: 418 MTGGDVAPL----GAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERNSIHMS---EA 470
+ G + + GA+ V + F AK+ K ++FIDE DA +R +S E
Sbjct: 235 LAGPQLVQMFIGDGAKLV---RDAFQLAKE-KSPCIIFIDEIDAIGTKRFDSEVSGDREV 290
Query: 471 QRSALNALLFRTGDQSRD-IVLVLATNRPGDLDSAI--TDRIDEVIEFPLPREEERFKLL 527
QR+ L L G S D I ++ ATNR LD A+ + R+D IEFP P EE R ++L
Sbjct: 291 QRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARIL 350
Query: 528 KLYLKKYLC------------SDEGDSSSLK-----WGHL-FKKQQQKITIKDLSDNVIQ 569
+++ +K +D+ + + LK G L ++ ++T +D ++ +IQ
Sbjct: 351 QIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQ 410
Query: 570 EAARK 574
A+K
Sbjct: 411 VQAKK 415
>sp|Q9SSB4|PRS7B_ARATH 26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana
GN=RPT1B PE=2 SV=2
Length = 464
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 8/158 (5%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKS 444
P + +L YGPPG+GKT+VAR +A ++G + + G + V + + E+F A +S
Sbjct: 238 PPKGVLCYGPPGSGKTLVARAVANRTGACFIRVVGSELVQKYIGEGARMVRELFQMA-RS 296
Query: 445 KKGLLLFIDEADAFLCERNSIHM---SEAQRSALNALLFRTGDQSR-DIVLVLATNRPGD 500
KK +LF DE DA R + +E QR+ L L G +R +I +++ATNRP
Sbjct: 297 KKACILFFDEIDAIGGARFDDGVGSDNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDI 356
Query: 501 LDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLC 536
LD A+ R+D +EF LP E R ++ K++ + C
Sbjct: 357 LDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSC 394
>sp|Q9SEX2|KTNA1_ARATH Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana
GN=AAA1 PE=1 SV=1
Length = 523
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 102/212 (48%), Gaps = 38/212 (17%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAP-LGAQAVTKIHEIFDWAKKS 444
P++ +L +GPPGTGKT++A+ +A + G + ++ +A ++ + +FD A+
Sbjct: 271 PWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAY 330
Query: 445 KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG---------DQSRDIVLVL-A 494
+FIDE D+ R E+ R + LL + D SR IV+VL A
Sbjct: 331 APS-TIFIDEIDSLCNSRGGSGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAA 389
Query: 495 TNRPGDLDSAITDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQ 554
TN P D+D A+ R+++ I PLP E R L+ + L+
Sbjct: 390 TNFPWDIDEALRRRLEKRIYIPLPDFESRKALININLR---------------------- 427
Query: 555 QQKITIKDLSDNVIQEAARKTEGFSGREIAKL 586
T++ SD I++ AR+TEG+SG ++ +
Sbjct: 428 ----TVEVASDVNIEDVARRTEGYSGDDLTNV 455
>sp|Q6GL04|TERA_XENTR Transitional endoplasmic reticulum ATPase OS=Xenopus tropicalis
GN=vcp PE=2 SV=1
Length = 805
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 94/165 (56%), Gaps = 7/165 (4%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDW 440
I P R +L YGPPGTGKT++AR +A ++G + ++ G ++ + L ++ + + + F+
Sbjct: 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 292
Query: 441 AKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALL-FRTGDQSRDIVLVL-ATNRP 498
A+K+ ++FIDE DA +R H E +R ++ LL G + R V+V+ ATNRP
Sbjct: 293 AEKNAPA-IIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350
Query: 499 GDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGD 541
+D A+ R D ++ +P R ++L+++ K SD+ D
Sbjct: 351 NSIDPALRRFGRFDREVDIGIPDSTGRLEILQIHTKNMKLSDDVD 395
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 86/160 (53%), Gaps = 8/160 (5%)
Query: 381 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLG-AQAVTKIHEIFD 439
K P + +LFYGPPG GKT++A+ IA + ++ + G ++ + ++ + EIFD
Sbjct: 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFD 564
Query: 440 WAKKSKKGLLLFIDEADAFLCER--NSIHMSEAQRSALNALLFRTGDQS--RDIVLVLAT 495
A+++ +LF DE D+ R N A +N +L S +++ ++ AT
Sbjct: 565 KARQAAP-CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 623
Query: 496 NRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKK 533
NRP +D AI R+D++I PLP E+ R +LK L+K
Sbjct: 624 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRIAILKANLRK 663
>sp|P23787|TERA_XENLA Transitional endoplasmic reticulum ATPase OS=Xenopus laevis GN=vcp
PE=1 SV=3
Length = 805
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 94/165 (56%), Gaps = 7/165 (4%)
Query: 382 IHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDW 440
I P R +L YGPPGTGKT++AR +A ++G + ++ G ++ + L ++ + + + F+
Sbjct: 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEE 292
Query: 441 AKKSKKGLLLFIDEADAFLCERNSIHMSEAQRSALNALL-FRTGDQSRDIVLVL-ATNRP 498
A+K+ ++FIDE DA +R H E +R ++ LL G + R V+V+ ATNRP
Sbjct: 293 AEKNAPA-IIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350
Query: 499 GDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGD 541
+D A+ R D ++ +P R ++L+++ K SD+ D
Sbjct: 351 NSIDPALRRFGRFDREVDIGIPDSTGRLEILQIHTKNMKLSDDVD 395
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 101/213 (47%), Gaps = 34/213 (15%)
Query: 381 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLG-AQAVTKIHEIFD 439
K P + +LFYGPPG GKT++A+ IA + ++ + G ++ + ++ + EIFD
Sbjct: 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFD 564
Query: 440 WAKKSKKGLLLFIDEADAFLCER--NSIHMSEAQRSALNALLFRTGDQS--RDIVLVLAT 495
A+++ +LF DE D+ R N A +N +L S +++ ++ AT
Sbjct: 565 KARQAAP-CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSIKKNVFIIGAT 623
Query: 496 NRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKK 553
NRP +D AI R+D++I PLP E+ R +LK L+K + + D L
Sbjct: 624 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRMAILKANLRKSPVAKDVDVDFL-------- 675
Query: 554 QQQKITIKDLSDNVIQEAARKTEGFSGREIAKL 586
A+ T GFSG ++ ++
Sbjct: 676 ------------------AKMTNGFSGADLTEI 690
>sp|Q8LQJ9|FTSH4_ORYSJ ATP-dependent zinc metalloprotease FTSH 4, mitochondrial OS=Oryza
sativa subsp. japonica GN=FTSH4 PE=3 SV=1
Length = 709
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 106/391 (27%), Positives = 176/391 (45%), Gaps = 68/391 (17%)
Query: 219 VKAMAEAEGRAHEAKLTEDHNRRMLIERINGEREKWLAAINTTFSHIEEGVRSLLTDRNK 278
VKA+ + + R ++ L + R M + GER +A+ + ++G+ L T
Sbjct: 105 VKALVKVD-RLDDSTLLKTLRRGMAVSGGEGERVGSSSALKSAGQATKDGI--LGTANAP 161
Query: 279 LVMTVGGATALAAGIYTTREGARVTWGYVNRILGQPSLIRESSIGKFPWSGL-LSQAMNK 337
+ M I+ T +T+ ++ G +LI + I K GL LSQ +
Sbjct: 162 IHMVTSETGHFKDQIWRTFRSLALTFLVIS---GIGALIEDRGISK----GLGLSQEVQP 214
Query: 338 VIRNKTSAGTAGPVEAIKNNGDIILH----PSLQRRIQHLAKATANTKIHQAPFRNMLFY 393
++ +KT V+ K + I+H P +R HL + P + +L
Sbjct: 215 IMDSKTKFSDVKGVDEAKAELEEIVHYLRDP---KRFTHLGG--------KLP-KGVLLV 262
Query: 394 GPPGTGKTMVAREIARKSGLDYAMMTGGD----VAPLGAQAVTKIHEIFDWAKKSKKGLL 449
GPPGTGKTM+AR +A ++G+ + +G + +GA+ ++ ++F AKK + +
Sbjct: 263 GPPGTGKTMLARAVAGEAGVPFFSCSGSEFEEMFVGVGAR---RVRDLFAAAKK-RSPCI 318
Query: 450 LFIDEADAFLCERNSIHMSEAQRSALNALLFRTGD--QSRDIVLVLATNRPGDLDSAIT- 506
+F+DE DA RN + R LN LL Q+ I+++ ATN P LD A+
Sbjct: 319 IFMDEIDAIGGSRNPKD-QQYMRMTLNQLLVELDGFKQNEGIIVIAATNFPQSLDKALVR 377
Query: 507 -DRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSD 565
R D I P P E R ++L+ ++ K L SD+ D
Sbjct: 378 PGRFDRHIVVPNPDVEGRRQILESHMLKVLKSDDVD------------------------ 413
Query: 566 NVIQEAARKTEGFSGREIAKL--MASVQAAV 594
+ AR T GFSG ++A L +A+++AA+
Sbjct: 414 --LMIIARGTPGFSGADLANLVNVAALKAAM 442
>sp|Q980M1|PAN_SULSO Proteasome-activating nucleotidase OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=pan
PE=3 SV=1
Length = 393
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 108/223 (48%), Gaps = 36/223 (16%)
Query: 381 KIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVA-PLGAQAVTKIHEIFD 439
+I P + +L YGPPGTGKTM+A+ +A +S + + + A + + E+F+
Sbjct: 162 EIGVEPPKGVLLYGPPGTGKTMLAKAVATESNAVFIHVVASEFAQKFVGEGARIVRELFE 221
Query: 440 WAKKSKKGLLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRTG-DQSRDIVLVLAT 495
AK+ K ++FIDE DA +R I S E QR+ + L G D ++ ++ AT
Sbjct: 222 MAKR-KAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFDPLDNVKIIAAT 280
Query: 496 NRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFKK 553
NR LD A+ R D +IE PLP + R ++ +YLKK K
Sbjct: 281 NRIDILDPALLRPGRFDRIIEVPLPDFKGRTEIFNIYLKKM------------------K 322
Query: 554 QQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQAAVYA 596
+ I ++ LS + TEGFSG +I + V+AA A
Sbjct: 323 IEDNINLELLS--------QLTEGFSGADIKNV--CVEAAYMA 355
>sp|O59824|YME1_SCHPO ATP-dependent zinc metalloprotease YME1 homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC965.04c PE=3 SV=1
Length = 709
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 113/244 (46%), Gaps = 47/244 (19%)
Query: 366 LQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGG--DV 423
L+ + L T T++ R +L GPPGTGKTM+AR +A ++ + + M+G D
Sbjct: 279 LEEIVDFLRDPTHFTRLGGKLPRGVLLTGPPGTGKTMLARAVAGEANVPFFFMSGSQFDE 338
Query: 424 APLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERN---SIHMSEAQRSALNALLF 480
+G A ++ E+F A+K ++FIDE DA +RN + HM R LN LL
Sbjct: 339 MYVGVGA-KRVRELFAAARKQAPS-IIFIDELDAIGQKRNARDAAHM----RQTLNQLLV 392
Query: 481 ------RTGDQSRDIVLVLATNRPGDLDSAIT--DRIDEVIEFPLPREEERFKLLKLYLK 532
+ D + +V + ATN P LD A+T R D I PLP R +
Sbjct: 393 DLDGFSKNEDLAHPVVFIGATNFPESLDPALTRPGRFDRHIHVPLPDVRGRLAI------ 446
Query: 533 KYLCSDEGDSSSLKWGHLFKKQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQA 592
L + + KD+ ++I AR T GF+G ++A L+ QA
Sbjct: 447 -----------------LLQHTRHVPLGKDVDLSII---ARGTSGFAGADLANLIN--QA 484
Query: 593 AVYA 596
AVYA
Sbjct: 485 AVYA 488
>sp|O74445|PRS10_SCHPO Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpt4 PE=3 SV=2
Length = 388
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 105/208 (50%), Gaps = 16/208 (7%)
Query: 345 AGTAGPVEAIKNNGDIILHPSLQRRIQHLAKATANTKIHQAPFRNMLFYGPPGTGKTMVA 404
AG G E I+ ++I P L ++ P + +L YGPPGTGKT++A
Sbjct: 132 AGVGGLNEQIRELREVIELP--------LKNPELFLRVGIKPPKGVLLYGPPGTGKTLLA 183
Query: 405 REIARKSGLDYA-MMTGGDVAPLGAQAVTKIHEIFDWAKKSKKGLLLFIDEADAFLCERN 463
R +A G+++ +++ V ++ I E+F +AK+ + ++F+DE DA R
Sbjct: 184 RAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKEHEP-CVIFMDEIDAIGGRRF 242
Query: 464 SIHMS---EAQRSALNALLFRTG-DQSRDIVLVLATNRPGDLDSAIT--DRIDEVIEFPL 517
S S E QR+ + L G D +++ATNRP LD A+ R+D IE PL
Sbjct: 243 SEGTSADREIQRTLMELLNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPL 302
Query: 518 PREEERFKLLKLYLKKYLCSDEGDSSSL 545
P E R ++LK++L+K E D +L
Sbjct: 303 PNEVGRMEILKIHLEKVSKQGEIDYEAL 330
>sp|O27092|PRS2_METTH Putative 26S protease regulatory subunit homolog MTH_1011
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=MTH_1011 PE=3 SV=1
Length = 372
Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 83/151 (54%), Gaps = 8/151 (5%)
Query: 388 RNMLFYGPPGTGKTMVAREIARKSGLD-YAMMTGGDVAPLGAQAVTKIHEIFDWAKKSKK 446
RN+LF+G PGTGKTM+A+ +A + + Y + + +IHE+++ A K+
Sbjct: 158 RNVLFHGSPGTGKTMLAKSLANELKVPLYLIKATSLIGEHVGDGARQIHELYELASKTAP 217
Query: 447 GLLLFIDEADAFLCERNSIHMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSA 504
++ FIDE DA +R + +NALL +Q+ +V + ATN P LD A
Sbjct: 218 SVI-FIDEMDAIGLDRRYQSLRGDVSEVVNALLTEMDGINQNWGVVTIGATNNPELLDKA 276
Query: 505 ITDRIDEVIEFPLPREEERFKLLKLYLKKYL 535
I R +E IEF LP +EER KL L+KY+
Sbjct: 277 IRSRFEEEIEFKLPDDEER----KLMLEKYI 303
>sp|D4GUJ7|PAN1_HALVD Proteasome-activating nucleotidase 1 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan1 PE=2 SV=2
Length = 406
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 8/167 (4%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGD-VAPLGAQAVTKIHEIFDWAKKS 444
P +L YGPPGTGKTM+A+ +A ++ + M G + V + + ++F+ A+++
Sbjct: 183 PPSGVLLYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLFEVAREN 242
Query: 445 KKGLLLFIDEADAFLCERNSIHMS---EAQRSALNALLFRTG-DQSRDIVLVLATNRPGD 500
+ ++FIDE DA +R S E QR+ + L G D+ +I ++ ATNR
Sbjct: 243 EPA-VIFIDEIDAIASKRTDSKTSGDAEVQRTMMQLLAEMDGFDERGNIRIIAATNRFDM 301
Query: 501 LDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSL 545
LD AI R D +IE P P E+ R + +++ +K SD+ D L
Sbjct: 302 LDPAILRPGRFDRLIEVPKPNEDGREIIFQIHTRKMNVSDDVDFVEL 348
>sp|P25694|CDC48_YEAST Cell division control protein 48 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CDC48 PE=1 SV=3
Length = 835
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 98/165 (59%), Gaps = 7/165 (4%)
Query: 386 PFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDV-APLGAQAVTKIHEIFDWAKKS 444
P R +L YGPPGTGKT++AR +A ++G + ++ G +V + + ++ + + + F+ A+K+
Sbjct: 247 PPRGVLMYGPPGTGKTLMARAVANETGAFFFLINGPEVMSKMAGESESNLRKAFEEAEKN 306
Query: 445 KKGLLLFIDEADAFLCERNSIHMSEAQRSALNALL-FRTGDQSR-DIVLVLATNRPGDLD 502
++FIDE D+ +R+ + E +R ++ LL G ++R ++V++ ATNRP +D
Sbjct: 307 APA-IIFIDEIDSIAPKRDKTN-GEVERRVVSQLLTLMDGMKARSNVVVIAATNRPNSID 364
Query: 503 SAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSL 545
A+ R D ++ +P R ++L+++ K +D+ D +L
Sbjct: 365 PALRRFGRFDREVDIGIPDATGRLEVLRIHTKNMKLADDVDLEAL 409
Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 38/230 (16%)
Query: 380 TKIHQAPFRNMLFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLG-AQAVTKIHEIF 438
TK +P + +LFYGPPGTGKT++A+ +A + ++ + G ++ + ++ + I +IF
Sbjct: 514 TKFGLSPSKGVLFYGPPGTGKTLLAKAVATEVSANFISVKGPELLSMWYGESESNIRDIF 573
Query: 439 DWAKKSKKGLLLFIDEADAFLCERNSI--HMSEAQRSALNALLFRTG--DQSRDIVLVLA 494
D A+ + ++F+DE D+ R A +N LL + +++ ++ A
Sbjct: 574 DKARAAAP-TVVFLDELDSIAKARGGSLGDAGGASDRVVNQLLTEMDGMNAKKNVFVIGA 632
Query: 495 TNRPGDLDSAI--TDRIDEVIEFPLPREEERFKLLKLYLKKYLCSDEGDSSSLKWGHLFK 552
TNRP +D AI R+D++I PLP E R +L L+K + L+ G
Sbjct: 633 TNRPDQIDPAILRPGRLDQLIYVPLPDENARLSILNAQLRK---------TPLEPGL--- 680
Query: 553 KQQQKITIKDLSDNVIQEAARKTEGFSGREIAKLMASVQ-AAVYARPDCV 601
+ A+ T+GFSG A L+ VQ AA YA D +
Sbjct: 681 --------------ELTAIAKATQGFSG---ADLLYIVQRAAKYAIKDSI 713
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 214,012,044
Number of Sequences: 539616
Number of extensions: 8788671
Number of successful extensions: 67250
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 3355
Number of HSP's that attempted gapping in prelim test: 52268
Number of HSP's gapped (non-prelim): 11004
length of query: 635
length of database: 191,569,459
effective HSP length: 124
effective length of query: 511
effective length of database: 124,657,075
effective search space: 63699765325
effective search space used: 63699765325
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)